? Illumina, Inc.
[Heading]
Date	8/1/2010
ContentVersion	1.0
FormatVersion	1.0.0
Number of Probes	22523
Number of Controls	852
[Probes]
Species	Source	Search_Key	Transcript	ILMN_Gene	Source_Reference_ID	RefSeq_ID	Unigene_ID	Entrez_Gene_ID	GI	Accession	Symbol	Protein_Product	Probe_Id	Array_Address_Id	Probe_Type	Probe_Start	Probe_Sequence	Chromosome	Probe_Chr_Orientation	Probe_Coordinates	Cytoband	Definition	Ontology_Component	Ontology_Process	Ontology_Function	Synonyms	Obsolete_Probe_Id
Rattus norvegicus	RefSeq	GI_62644958-S	ILMN_57573	LOC499782	XM_575115.1	XM_575115.1		499782	62644958	XM_575115.1	LOC499782	XP_575115.1	ILMN_1356720	0001570300	S	167	GAGAGTTGAGCTTTTCGGCCTATATCCGGCGTGGGCGGAGCAACATCCGT				3p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (LOC499782), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643181-S	ILMN_58017	LOC502515	XM_577999.1	XM_577999.1		502515	62643181	XM_577999.1	LOC502515	XP_577999.1	ILMN_1355539	0006840575	S	4804	CACACTGCCTGGAGGGGGACAGGAAGATTGAACTGGACATCCTGGTGATG					PREDICTED: Rattus norvegicus similar to AFL095Wp (LOC502515), mRNA.					
Rattus norvegicus	RefSeq	GI_20301967-S	ILMN_297955	PRSS8	NM_138836.1	NM_138836.1		192107	20301967	NM_138836.1	Prss8	NP_620191.1	ILMN_1365415	0004200670	S	2079	GGTTTCACCTTCACGGGATGAGAACAAAAGGGAGCTTTGGACCTGGGGGG	1	-	187210635-187210684	1q36	Rattus norvegicus protease, serine, 8 (prostasin) (Prss8), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance [goid 51385] [evidence IEP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IMP];  [goid 17080] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62647669-S	ILMN_54533	WBP1	XM_216198.4	XM_216198.4		297381	109472229	XM_216198.4	Wbp1	XP_216198.3	ILMN_1373448	0006620576	S	1750	TAGTCAAGGAGCTGAGGGCTAGTGCCACCCAACCAGACCTGGAGGACCAT	4	-	117331447-117331496	4q34	PREDICTED: Rattus norvegicus WW domain binding protein 1 (Wbp1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence ISS]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658996-S	ILMN_289444	COX6A1	NM_012814.1	NM_012814.1		25282	77736543	NM_012814.1	Cox6a1	NP_036946.1	ILMN_1353631	0000730300	S	393	CCACAGCACTGATTTGGACCCTGACTCTTGTGTGTGGACCACGAAAGCCC	12	+	42532988-42533037	12q16	Rattus norvegicus cytochrome c oxidase, subunit VIa, polypeptide 1 (Cox6a1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	COX6AL	COX6AL
Rattus norvegicus	RefSeq	GI_62656954-S	ILMN_275442	IGFBP4	NM_001004274.2	NM_001004274.2		360622	70778853	NM_001004274.2	Igfbp4	NP_001004274.1	ILMN_2039365	0005360327	A	959	AAGGGGGAGCTGGACTGCCACCAACTGGCTGACAGCCTCCAAGAGTGAGA	10	+	87833110-87833157:87833158-87833159	10q31	Rattus norvegicus insulin-like growth factor binding protein 4 (Igfbp4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence TAS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]	IGF-BP4; IBP4	IGF-BP4; IBP4
Rattus norvegicus	RefSeq	GI_16758203-S	ILMN_269790	PICK1	NM_053460.1	NM_053460.1		84591	16758203	NM_053460.1	Pick1	NP_445912.1	ILMN_1361828	0000730072	S	1645	TGCAGGGAATGGGAGCTGGGTGGACATCCGAGGCTGTGACCAGTGTACCA	7	+	117232492-117232541	7q34	Rattus norvegicus protein interacting with PRKCA 1 (Pick1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IPI]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence ISS]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence ISS]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence NAS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IMP]	Interacting selectively with protein kinase C [goid 5080] [evidence ISS]; Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with protein kinase C [goid 5080] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with a receptor that possesses protein tyrosine kinase activity [goid 30971] [evidence TAS]; Interacting selectively with a metabotropic glutamate receptor. Metabotropic glutamate receptors are G-protein coupled receptors that bind glutamate and exert an effect through the regulation of enzyme activity [goid 35256] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with an ephrin receptor [goid 46875] [evidence TAS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence TAS]	Prkcabp	Prkcabp
Rattus norvegicus	RefSeq	GI_12083670-S	ILMN_302590	OLAH	NM_022705.1	NM_022705.1		64669	12083670	NM_022705.1	Olah	NP_073196.1	ILMN_1371132	0006660377	S	1229	GGAGCATTTATCTCTCTGGGGAAAGGACACGGCTGAAGAGGCGCACAGGC	17	+	86020896-86020945	17q12.3	Rattus norvegicus oleoyl-ACP hydrolase (Olah), mRNA.		The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]	Catalysis of the reaction: oleoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + oleate [goid 4320] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]	Mch	Mch
Rattus norvegicus	RefSeq	GI_25742779-S	ILMN_296021	DBH	NM_013158.1	NM_013158.1		25699	25742779	NM_013158.1	Dbh	NP_037290.1	ILMN_1374582	0003170167	S	2091	GAGTCCAGATTCAACTCCACAGGACCTCCCTTGCCTCCAGAACAGCCTTA	3	+	6069665-6069714	3p12	Rattus norvegicus dopamine beta hydroxylase (Dbh), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; Any process involved in the carrying out of an immune response by a leukocyte [goid 2443] [evidence ISS]; Any process involved in the carrying out of an immune response by a leukocyte [goid 2443] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6548] [evidence IEA]; The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IC ]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any homoeostatic process by which an organism maintains its internal body temperature at a relatively constant value. This is achieved by using metabolic processes to counteract fluctuations in the temperature of the environment [goid 42309] [evidence ISS]; Any homoeostatic process by which an organism maintains its internal body temperature at a relatively constant value. This is achieved by using metabolic processes to counteract fluctuations in the temperature of the environment [goid 42309] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence TAS]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence ISS]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence IEA]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence IMP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; The response of an organism to a perceived external threat [goid 42596] [evidence ISS]; The response of an organism to a perceived external threat [goid 42596] [evidence IEA]; Female behaviors associated with the care and rearing of offspring [goid 42711] [evidence ISS]; Female behaviors associated with the care and rearing of offspring [goid 42711] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IEA]; The chemical reactions and pathways involving octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepihephrine and is found in the salivary glands of Octopus and Eledone species [goid 46333] [evidence IMP]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence ISS]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence TAS]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IEA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IDA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IMP]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IMP]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	DOPBHY	DOPBHY
Rattus norvegicus	RefSeq	GI_62649883-S	ILMN_52371	LOC502991	XM_578499.1	XM_578499.1		502991	62649883	XM_578499.1	LOC502991	XP_578499.1	ILMN_1359915	0006840397	S	312	CACCTCCACATTCAGCGGTACACCATGAAGATGCTGAACTTCCAGGGCGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310005N03 (LOC502991), mRNA.					
Rattus norvegicus	RefSeq	GI_62661954-S	ILMN_47765	LOC502011	XM_577439.1	XM_577439.1		502011	62661954	XM_577439.1	LOC502011	XP_577439.1	ILMN_1366207	0003290373	S	478	GCATTGTCTGGATTTCCTACGACCCCGCTCGCTTTCCGAGATACCTGCCC					PREDICTED: Rattus norvegicus similar to IL-17D (LOC502011), mRNA.					
Rattus norvegicus	RefSeq	GI_62647604-S	ILMN_51437	LOC502843	XM_578343.1	XM_578343.1		502843	62647604	XM_578343.1	LOC502843	XP_578343.1	ILMN_1353331	0005340142	S	205	AACTGCTTATCTATGGGGCATCCAACCGGTACACTGGAGTCCCTGATCGC				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502843), mRNA.					
Rattus norvegicus	RefSeq	GI_57528406-S	ILMN_264783	LRG1	NM_001009717.1	NM_001009717.1		367455	57528406	NM_001009717.1	Lrg1	NP_001009717.1	ILMN_1353943	0001400168	S	989	CAGAGCTGGGGACCTTGTGAGGATGGCAACTGGGGTGCGAGCCAAGGGTA	Un|NW_047865.1	+	974723-974742:974743-974772		Rattus norvegicus leucine-rich alpha-2-glycoprotein 1 (Lrg1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95065	MGC95065
Rattus norvegicus	RefSeq	GI_62666981-S	ILMN_290144	RGD1563383_PREDICTED	XR_007834.1	XR_007834.1		317533	109511851	XR_007834.1	RGD1563383_predicted		ILMN_1366701	0001580465	S	2125	CATTACCCACCTTTAGAGGCCAGACAGCAAATGCATGTTATAAGCCCAGA				Xq22	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930595M18 (predicted) (RGD1563383_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162352-S	ILMN_291360	CFI	NM_024157.1	NM_024157.1		79126	13162352	NM_024157.1	Cfi	NP_077071.1	ILMN_1357309	0002900176	S	1582	GAGATGCAGTGTGCGGGTACCAGTGATGGGTCCATTGATGCCTGCAAAGG	2	+	227325092-227325109	2q43	Rattus norvegicus complement factor I (Cfi), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641152-S	ILMN_49251	USP47_PREDICTED	XM_218997.4	XM_218997.4		308896	109459235	XM_218997.4	Usp47_predicted	XP_218997.3	ILMN_1350712	0004780180	S	5430	CATCGTATGGAATAGTTTCTCGGGGGCCTTGGTGCAGACCTGGTGCCACA	1	+	169919812-169919861	1q33	PREDICTED: Rattus norvegicus ubiquitin specific protease 47 (predicted) (Usp47_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659480-S	ILMN_50037	RGL1_PREDICTED	XM_222717.4	XM_222717.4		289080	109498017	XM_222717.4	Rgl1_predicted	XP_222717.4	ILMN_1370136	0002810064	S	2392	AGGACAGCTAAGCGGGGCTGCTGGAGTAACAGACACAGCAAGGTCACCCT	13	-	67469699-67469748	13q21	PREDICTED: Rattus norvegicus ral guanine nucleotide dissociation stimulator,-like 1 (predicted) (Rgl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507082-S	ILMN_301015	SEMA4F	NM_019272.1	NM_019272.1		29745	9507082	NM_019272.1	Sema4f	NP_062145.1	ILMN_1373899	0006450402	S	3820	CCCCTTGGTTTGGAGTTCCCGGTGGCTTTGAGTAGGATCTTTGGCGTGGC	4	-	117104765-117104814	4q34	Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F (Sema4f), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IDA]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62649471-S	ILMN_278092	LOC298442	NM_001025656.1	NM_001025656.1		298442	71043663	NM_001025656.1	LOC298442	NP_001020827.1	ILMN_1360341	0005340044	S	1327	GGGAACTCCAGAACAACTCCCTTTCTAACCTGGAACCCAGCAGCTCTCAG	5	+	137006761-137006763:137007447-137007493	5q36	Rattus norvegicus similar to RIKEN cDNA 0610037D15 (LOC298442), mRNA.				MGC114580	MGC114580
Rattus norvegicus	Unigene	Rn.49412	ILMN_160524	RN.49412	Rn.49412		Rn.49412		14960831	BI296422			ILMN_1530174	0004230017	S	36	TTCTTATTTTTCTTTCATTAGCAAACATACAAATGGGTAGAGTGAACCCT					UI-R-CV2-cgr-a-06-0-UI.s1 UI-R-CV2 Rattus norvegicus cDNA clone UI-R-CV2-cgr-a-06-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62664251-S	ILMN_52915	SLC25A2_PREDICTED	XM_226032.3	XM_226032.3		291640	109506503	XM_226032.3	Slc25a2_predicted	XP_226032.1	ILMN_1372163	0003710292	S	616	GGATGGTCCCTTAGGCTTCTATCGTGGACTCTCAACCACTCTTGCTCAGG	18	-	30537147-30537196	18p11	PREDICTED: Rattus norvegicus solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2 (predicted) (Slc25a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641336-S	ILMN_280046	BCL7C_PREDICTED	XM_001078626.1	XM_001078626.1		293514	109462910	XM_001078626.1	Bcl7c_predicted	XP_001078626.1	ILMN_1366449	0006760215	S	699	GCAGGAGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCC				1q36	PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 7C (predicted) (Bcl7c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718760-S	ILMN_263390	LOC501467	XM_576877.1	XM_576877.1		501467	62718760	XM_576877.1	LOC501467	XP_576877.1	ILMN_1355945	0001990292	S	378	GCTGAAGAAGGATATTAACTTCTATCGGTAAGTACTGGTCAGAAGGGCCC	Un|NW_047968.1	+	44229-44259:44260-44278		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501467), mRNA.					
Rattus norvegicus	RefSeq	GI_62661321-S	ILMN_52393	LOC364300	XM_344326.2	XM_344326.2		364300	62661321	XM_344326.2	LOC364300	XP_344327.2	ILMN_1349023	0000430706	S	196	GCTACATCGCCAGAGTGAAGCAGCATTATACAGAGCAATGGGCACAGACC					PREDICTED: Rattus norvegicus similar to proteasome (prosome, macropain) subunit, alpha type 7 (LOC364300), mRNA.					
Rattus norvegicus	RefSeq	GI_62646348-S	ILMN_272953	PIGT_PREDICTED	XM_001070371.1	XM_001070371.1		296360	109471284	XM_001070371.1	Pigt_predicted	XP_001070371.1	ILMN_1353356	0001850091	S	2061	CAGGTAATGGGGTGCAGTAGAGCTTGTGGTACTGTGGGAGGGGCGCTGAA				3q42	PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class T (predicted) (Pigt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036665-S	ILMN_300390	STC1	NM_031123.2	NM_031123.2		81801	51036665	NM_031123.2	Stc1	NP_112385.1	ILMN_1360404	0007050273	S	2171	CCCCTTGGAAGTGGCAGTTCTTGGCTCATTGCCTTCCATCAATGCCTGGC	15	+	49577265-49577314	15p11	Rattus norvegicus stanniocalcin 1 (Stc1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence TAS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576272-S	ILMN_281862	OLR1297	NM_001000461.1	NM_001000461.1		300600	47576272	NM_001000461.1	Olr1297	NP_001000461.1	ILMN_1352756	0005700398	S	854	TGAATCCTGTGATCTACAGCCTGCGAAATAAAGAAGTCAAAGTTGCCCTG	8	-	41710788-41710837	8q22	Rattus norvegicus olfactory receptor 1297 (Olr1297), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1297	Olr1297
Rattus norvegicus	RefSeq	GI_62664626-S	ILMN_51481	RGD1310784_PREDICTED	XM_214527.3	XM_214527.3		291441	109506791	XM_214527.3	RGD1310784_predicted	XP_214527.1	ILMN_1361140	0003940154	S	1155	GAGGCCAGAGGAGGATCTTGAGAAGTACGGAGAAGAGGGGAGCAGAGGTG	18	-	70988305-70988354	18q12.2	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810433K01 (predicted) (RGD1310784_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880865-S	ILMN_58326	RGD1565820_PREDICTED	XM_344165.3	XM_344165.3		364029	109498096	XM_344165.3	RGD1565820_predicted	XP_344166.3	ILMN_2040653	0002320204	S	2771	CATCTGCCACTTTTGGGATAGACCCAAGCCCGAGGACTACTGACAGACAG	13	+	76808511-76808560	13q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565820_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649879	ILMN_267175	TMEM57	NM_001025699.2	NM_001025699.2		313618	84619517	NM_001025699.2	Tmem57	NP_001020870.2	ILMN_1650041	0002900551	S	1873	AACGCAACACCTAGAGAACAGCCTCAGTGCAGAGACGAGGATCAAGCTGG				5q36	Rattus norvegicus transmembrane protein 57 (Tmem57), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC116145; Tmem57	MGC116145; Tmem57
Rattus norvegicus	RefSeq	GI_62647019-S	ILMN_69500	LOC362337	XM_347041.2	XM_347041.2		362337	62647019	XM_347041.2	LOC362337	XP_347042.1	ILMN_1373722	0000540195	S	336	TCCCATGCCAGCAAGTGCCGGGTTGCTACAAAGGTGACAGGGCACATTGG					PREDICTED: Rattus norvegicus hypothetical LOC362337 (LOC362337), mRNA.					
Rattus norvegicus	RefSeq	GI_47577922-S	ILMN_268619	OLR1139	NM_001000427.1	NM_001000427.1		300395	47577922	NM_001000427.1	Olr1139	NP_001000427.1	ILMN_1364693	0006420452	S	483	GCTCTCCATACTCAGTAGCATGATAGATGCCCTGCTACATAGTCTGTTGG	8	-	17305190-17305239	8q13	Rattus norvegicus olfactory receptor 1139 (Olr1139), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-17305722-17304748_ORF; Olr1139	ratchr8-17305722-17304748_ORF; Olr1139
Rattus norvegicus	RefSeq	GI_20302027-S	ILMN_266652	RGD621352	NM_138865.1	NM_138865.1		192229	20302027	NM_138865.1	RGD621352	NP_620220.1	ILMN_1364181	0000510025	S	1354	GGAAGTCTGCCCACAATGAGCGATAGGTGCTGCTGTTCAGACCTGTTCGT	11	-	70500178-70500227	11q22	Rattus norvegicus similar to RIKEN cDNA 1500031L02 (RGD621352), mRNA.					
Rattus norvegicus	RefSeq	GI_13929045-S	ILMN_286127	KCNH1	NM_031742.1	NM_031742.1		65198	13929045	NM_031742.1	Kcnh1	NP_113930.1	ILMN_1358383	0000670403	S	4395	GGCTATTTTTGTGGTCAGCCGAGGATGCTGCCAAGAGCTCCCCTGTGTGG				13q27	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 1 (Kcnh1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650274-S	ILMN_51635	COX7A2L_PREDICTED	XM_216635.4	XM_216635.4		298762	109477872	XM_216635.4	Cox7a2l_predicted	XP_216635.3	ILMN_1367003	0007000019	S	148	CCAGAGAAGCACCGCCTATCATATTTGCCACACCGACCAAACTGACCTCC	6	-	6836500-6836549	6q12	PREDICTED: Rattus norvegicus cytochrome c oxidase subunit VIIa polypeptide 2 like (predicted) (Cox7a2l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653702-S	ILMN_263163	RGD1562084_PREDICTED	XM_001073058.1	XM_001073058.1		501002	109484738	XM_001073058.1	RGD1562084_predicted	XP_001073058.1	ILMN_1368029	0001190195	S	2095	AGCTTCAGCAGGGTAGAGTGTGGGGGCCAGCTCAGCCTCTTTTGTTGCCT				8q24	PREDICTED: Rattus norvegicus similar to expressed sequence AI118078 (predicted) (RGD1562084_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649977-S	ILMN_57390	EFHD2_PREDICTED	XM_216579.3	XM_216579.3		298609	62649977	XM_216579.3	Efhd2_predicted	XP_216579.3	ILMN_1363733	0006770273	S	2328	AGGCGGACAGGATTTATTCTGGATCTAGGCGGCCACAGCAAGTGCCCAGG				5q36	PREDICTED: Rattus norvegicus EF hand domain containing 2 (predicted) (Efhd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663068-S	ILMN_262595	CCDC71	NM_001024904.1	NM_001024904.1		498678	67846085	NM_001024904.1	Ccdc71	NP_001020075.1	ILMN_1357267	0001570138	S	1315	GTGCTCAGACGATGAGGTTCGACAGTGTGCCCAACAGATCCTCCGTGTGA	16|NW_047483.1	+	249662-249711		Rattus norvegicus coiled-coil domain containing 71 (Ccdc71), mRNA.					
Rattus norvegicus	RefSeq	GI_62645852-S	ILMN_270475	RGD1566226_PREDICTED	XM_001081139.1	XM_001081139.1		296149	109470808	XM_001081139.1	RGD1566226_predicted	XP_001081139.1	ILMN_1366928	0002970133	S	1015	CCTCCGGCAGTGAGAGTGTCCCAGTCTTCAACTGTCTCCAGTTTGGTGAC				3q36	PREDICTED: Rattus norvegicus similar to hypothetical protein F830045P16 (predicted) (RGD1566226_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641685-S	ILMN_272297	RGD1306343_PREDICTED	XM_001067482.1	XM_001067482.1		309146	109463316	XM_001067482.1	RGD1306343_predicted	XP_001067482.1	ILMN_1360006	0001740717	S	1156	TTGTAGCTGTGGTGGATGGACAGGCCGCTGTTGCTGTGTCTTTTGTGGCC				1q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810036I24 (predicted) (RGD1306343_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651302-S	ILMN_279940	JAG2	XM_001073124.1	XM_001073124.1		29147	109480052	XM_001073124.1	Jag2	XP_001073124.1	ILMN_1352777	0003060632	S	4154	ATTTTTGTAAGGTTTCCGTGTCCGCACGCACTGTGGCAGGAGAGCAGGGC				6q32	PREDICTED: Rattus norvegicus jagged 2 (Jag2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence NAS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence NAS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process by which the cellular identity of auditory hair cells is acquired and determined [goid 9912] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence NAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence NAS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whereby a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell [goid 42492] [evidence ISS]; The process whereby a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell [goid 42492] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The process of T cell selection that occurs in the thymus [goid 45061] [evidence ISS]; The process of T cell selection that occurs in the thymus [goid 45061] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence TAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence TAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence ISS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence NAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56605667-S	ILMN_268605	FLII	NM_001008279.1	NM_001008279.1		287375	56605667	NM_001008279.1	Flii	NP_001008280.1	ILMN_1354486	0000780131	S	3898	CTCACATCCTGCAAGCAGCACACAGCCCAAAGCCCTACCAGTGTGTCCAC	10	-	46860327-46860376	10q22	Rattus norvegicus flightless I homolog (Drosophila) (Flii), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Flii; MGC94344	Flii; MGC94344
Rattus norvegicus	RefSeq	GI_62667040-S	ILMN_63334	PDZD11_PREDICTED	XM_217572.4	XM_217572.4		302422	109510903	XM_217572.4	Pdzd11_predicted	XP_217572.1	ILMN_1349933	0002900181	S	620	CACCCTCCTGGTTTATGGATGGGGAGGATGGGGAGACAGCTTACCAGCTG	X	-	88621556-88621605	Xq31	PREDICTED: Rattus norvegicus PDZ domain containing 11 (predicted) (Pdzd11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667059-S	ILMN_268858	ITGB1BP2_PREDICTED	XM_001069915.1	XM_001069915.1		317258	109512071	XM_001069915.1	Itgb1bp2_predicted	XP_001069915.1	ILMN_1361212	0006620717	S	1172	CAGAGACCAGGATAGGGTTGACTATGTGGTGTCATTGAGCAGCAGGAGGC				Xq31	PREDICTED: Rattus norvegicus integrin beta 1 binding protein 2 (predicted) (Itgb1bp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648562-S	ILMN_280561	RB1CC1_PREDICTED	XM_001061446.1	XM_001061446.1		312927	109475983	XM_001061446.1	Rb1cc1_predicted	XP_001061446.1	ILMN_1364648	0006200161	S	5838	CCGGTCTCCAGGGAGGAAAAGTCTGTACCGCTGATCTTTTCAAGTGCAGG				5q12	PREDICTED: Rattus norvegicus RB1-inducible coiled-coil 1 (predicted) (Rb1cc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667530-S	ILMN_266408	RGD1565442_PREDICTED	XM_001054068.1	XM_001054068.1		293841	109462282	XM_001054068.1	RGD1565442_predicted	XP_001054068.1	ILMN_1362577	0004920129	S	404	GGTGTCGCCGAAAAGCTATTGTTGAGGAAGCCAGGAAACAAATGGGCTGC				Xq37	PREDICTED: Rattus norvegicus similar to X-linked lymphocyte regulated gene 4 (predicted) (RGD1565442_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661805-S	ILMN_274811	RGD1560797_PREDICTED	XM_001076325.1	XM_001076325.1		306115	109502870	XM_001076325.1	RGD1560797_predicted	XP_001076325.1	ILMN_1363059	0007100368	S	981	CAAGATGGTAATGAAGCAGGTGTCCGAGGGCCCACTAAAGGGCATCCTGG				15q21	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560797_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660548-S	ILMN_56971	LOC498382	XM_579820.1	XM_579820.1		498382	62660548	XM_579820.1	LOC498382	XP_579820.1	ILMN_1372779	0003060324	S	119	TGGCAGCTACTCCTCAATATGAAGATCCTTTCCTGGATGGGGGGCGCTGG					PREDICTED: Rattus norvegicus LOC498382 (LOC498382), mRNA.					
Rattus norvegicus	RefSeq	GI_62654016-S	ILMN_288773	LOC367117	XM_001060455.1	XM_001060455.1		367117	109485040	XM_001060455.1	LOC367117	XP_001060455.1	ILMN_1369524	0004570044	S	483	GACCAGTCCTGAACCGATCAAAAACCGGCTCCGAGTGCAAGCACCCTGTC				8q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900055D03 (LOC367117), mRNA.					
Rattus norvegicus	RefSeq	GI_62643274-S	ILMN_62930	LOC497754	XM_579458.1	XM_579458.1		497754	62643274	XM_579458.1	LOC497754	XP_579458.1	ILMN_1374731	0005390519	S	6511	CACTGGAAGGGACGCAGCTAAGAAACGCCAGTCCAAACCCGAAAGTGGGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022548 (LOC497754), mRNA.					
Rattus norvegicus	RefSeq	GI_24429583-S	ILMN_289905	PRRX1	NM_153821.1	NM_153821.1		266813	24429583	NM_153821.1	Prrx1	NP_722543.1	ILMN_1368514	0006400528	S	972	CGCAGGGTATCAACATGGCCAACAGCATTGCCAACCTGAGACTGAAGGCC	13	-	78962003-78962052	13q22	Rattus norvegicus paired related homeobox 1 (Prrx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence ISS]; The process by which the anatomical structures of cranial skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48701] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Pmx1; Prx-1	Pmx1; Prx-1
Rattus norvegicus	RefSeq	GI_62663345-S	ILMN_294125	MYLIP_PREDICTED	XM_001059193.1	XM_001059193.1		306825	109505607	XM_001059193.1	Mylip_predicted	XP_001059193.1	ILMN_1374414	0000430494	S	1509	GCAGACCAGAGTGCTGCAGGAGAAGCTGCGCAAACTGAAGGAAGCCATGC				17p12	PREDICTED: Rattus norvegicus myosin regulatory light chain interacting protein (predicted) (Mylip_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.2894	ILMN_161178	RN.2894	Rn.2894		Rn.2894		31155355	CD371265			ILMN_1530228	0006660152	S	51	AAAGACAATACAAAATCCAAACATTCCTTTTTACAAGTTCAGATACATAT					UI-R-DY0-crh-d-06-0-UI.s1 UI-R-DY0 Rattus norvegicus cDNA clone UI-R-DY0-crh-d-06-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62639341-S	ILMN_50339	KIRREL2_PREDICTED	XM_218486.3	XM_218486.3		292784	62639341	XM_218486.3	Kirrel2_predicted	XP_218486.3	ILMN_1369170	0001240411	S	2838	TTGGGGAGTCAGAGCAAGCTGATGACCAATCCCTCCAAAATGGAGCCCTG					PREDICTED: Rattus norvegicus kin of IRRE like 2 (Drosophila) (predicted) (Kirrel2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644624	ILMN_63282	LOC365977	XM_345312.3	XM_345312.3		365977	109465733	XM_345312.3	LOC365977	XP_345313.3	ILMN_1651033	0000610136	S	71	GATGATAGTGTGACCACTGGCATCTTCATGAGCTCCAGAGGTCACAGCAC	2|NW_047644.1	-	163988-164011:164012-164037		PREDICTED: Rattus norvegicus similar to Dual specificity protein phosphatase 14 (Mitogen-activated protein kinase phosphatase 6) (MAP kinase phosphatase 6) (MKP-6) (LOC365977), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19923684-S	ILMN_51512	JUN	NM_021835.3	NM_021835.3		24516	82523470	NM_021835.3	Jun	NP_068607.1	ILMN_1365705	0004050576	S	2804	CTTAAGGCTGGAAGAAGAGGGTGTTGCAAGGGGAGAGGGACAGCCCACTG	5	-	115358406-115358455	5q33	Rattus norvegicus Jun oncogene (Jun), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IMP]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence TAS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IMP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues [goid 31953] [evidence IEA]; Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues [goid 31953] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features of leading edge cells, cells at the front of a migrating epithelial sheet [goid 35026] [evidence IEA]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features of leading edge cells, cells at the front of a migrating epithelial sheet [goid 35026] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of monocyte differentiation [goid 45657] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IDA]; A change in the state or activity of a cell (in terms of enzyme production, gene expression, etc.) as a result of deprivation of potassium ions [goid 51365] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655361-S	ILMN_282996	RGD1563955_PREDICTED	XM_343615.2	XM_343615.2		363274	62655361	XM_343615.2	RGD1563955_predicted	XP_343616.2	ILMN_1359206	0004010368	S	1721	CCTGGATAGGTACAGAACAAGAACAGAGGCTGGGAAAGGAGCACCAGGGC	9	+	85993717-85993766	9q35	PREDICTED: Rattus norvegicus similar to transmembrane serine protease 9 (predicted) (RGD1563955_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742775-S	ILMN_48680	MC4R	NM_013099.2	NM_013099.2		25635	83025110	NM_013099.2	Mc4r	NP_037231.1	ILMN_1363931	0003990154	S	1451	CACTCAGGCACAACCTGAGCAGTGTACTTCCCAACAGCTGCCTCTACTGT	18	-	63391309-63391358	18q12.1	Rattus norvegicus melanocortin 4 receptor (Mc4r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IDA];  [goid 6112] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence IEA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IDA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_13242319-A	ILMN_293223	AKAP4	NM_024402.1	NM_024402.1		79254	13242319	NM_024402.1	Akap4	NP_077378.1	ILMN_1376800	0002970441	S	2210	CTGAGCTAGAAGAGCAAGCAGCCCTAGCAAGCAATGGCCCCAGATGTGGC	X	-	27515063-27515112	Xq13	Rattus norvegicus A kinase (PRKA) anchor protein 4 (Akap4), mRNA.	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]	The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659038-S	ILMN_264640	FOXN4_PREDICTED	XM_001080414.1	XM_001080414.1		288736	109497499	XM_001080414.1	Foxn4_predicted	XP_001080414.1	ILMN_1366227	0006450736	S	2163	GCCCTTTCCAGATGTGCAGGTGACAGGTCTCTATGCGGCCTATTCCACTG				12q16	PREDICTED: Rattus norvegicus forkhead box N4 (predicted) (Foxn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651473-S	ILMN_65773	LOC503060	XM_580258.1	XM_580258.1		503060	62651473	XM_580258.1	LOC503060	XP_580258.1	ILMN_1363164	0001240059	S	21	GAAGGGCAGTGTGCCAAGGGCAACAGCTGGCACATAAGTAATTTCAGCCC				6q32	PREDICTED: Rattus norvegicus LOC503060 (LOC503060), mRNA.					
Rattus norvegicus	RefSeq	GI_62647794-S	ILMN_279272	CCDC37_PREDICTED	XM_001076288.1	XM_001076288.1		297444	109473925	XM_001076288.1	Ccdc37_predicted	XP_001076288.1	ILMN_1349421	0001990524	S	1749	TCGTGAAGAGAAGGCCAGGATGCAGAAGCAGTTGCAGGAGGAACGTCTGC				4q34	PREDICTED: Rattus norvegicus coiled-coil domain containing 37 (predicted) (Ccdc37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559989-S	ILMN_280035	FGF5	NM_022211.1	NM_022211.1		60662	11559989	NM_022211.1	Fgf5	NP_071547.1	ILMN_1367620	0004850100	S	609	GGTCAAACCCCAGCACGTCTCCACCCACTTCCTACCCAGGTTCAAGCAGT	14	-	12714113-12714162	14p22	Rattus norvegicus fibroblast growth factor 5 (Fgf5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]	Interacting selectively with the nerve growth factor receptor [goid 5163] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641120-S	ILMN_47806	NRIP3_PREDICTED	XM_341903.3	XM_341903.3		361625	109459225	XM_341903.3	Nrip3_predicted	XP_341904.3	ILMN_1355487	0005570286	S	862	GCACGTGCACTCACACCAGGTTGACAGATGAGACAACTGGGTTCGAACCA	1	-	167383317-167383366	1q33	PREDICTED: Rattus norvegicus nuclear receptor interacting protein 3 (predicted) (Nrip3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14091753-S	ILMN_290160	GRIP1	NM_032069.1	NM_032069.1		84016	14091753	NM_032069.1	Grip1	NP_114458.1	ILMN_1362595	0003520132	S	4127	GCAACAGTGCACGTTGGAGACCATAATAGGTGGTGGTAAATGTTTCGCCC				7q22	Rattus norvegicus glutamate receptor interacting protein 1 (Grip1), mRNA.	Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 1041498] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11178875] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9768844] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11178875] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_19424283-S	ILMN_284765	CES2	NM_133586.1	NM_133586.1		171118	19424283	NM_133586.1	Ces2	NP_598270.1	ILMN_1357047	0001190368	S	1712	TGTCTGGTGAAAGGAACAGAGTGTGGGAGTGAGGGCAGGTGGGATCATTC	1	+	267894801-267894850	1q55	Rattus norvegicus carboxylesterase 2 (intestine, liver) (Ces2), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	rCES2; CES RL4	rCES2; CES RL4
Rattus norvegicus	RefSeq	GI_9665228-S	ILMN_301010	ESPN	NM_019622.1	NM_019622.1		56227	9665228	NM_019622.1	Espn	NP_062568.1	ILMN_1359944	0006100044	S	2431	AGAACAGTCGGAGAAGCTGCGGACACTAGGATACGACGAGGCCAAGCTCG	5	-	169350021-169350070	5q36	Rattus norvegicus espin (Espn), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence TAS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 16413524] [evidence IDA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [pmid 16413524] [evidence IDA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [pmid 9763424] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [pmid 16413524] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [pmid 8799813] [evidence IDA]	The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Assembly of actin filament bundles in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity [goid 30046] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence NAS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]	Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [pmid 12598619] [evidence IPI]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [pmid 8799813] [evidence IDA]	Je	Je
Rattus norvegicus	RefSeq	GI_62650560-S	ILMN_65854	SNTG2_PREDICTED	XM_234043.4	XM_234043.4		298936	109478103	XM_234043.4	Sntg2_predicted	XP_234043.3	ILMN_1360869	0000940022	S	1667	CCCTAGACCCTGCATTCATGGACAGCCAGAGCGTGGCAAGAAGATACATG	6	-	48059916-48059965	6q16	PREDICTED: Rattus norvegicus syntrophin, gamma 2 (predicted) (Sntg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658550-S	ILMN_275263	LOC501810	XR_008976.1	XR_008976.1		501810	109496690	XR_008976.1	LOC501810		ILMN_1368120	0002120156	S	449	CTAGTGCACCTCCCGAGACTGAGACAAGAAGATGGAAGTCTAGCCAGGGC				12q11	PREDICTED: Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (Ly-48) (B cell differentiation antigen LP-3) (CD43 antigen) (LOC501810), mRNA.					
Rattus norvegicus	RefSeq	GI_62079122-S	ILMN_296988	RGD1308470	NM_001014198.1	NM_001014198.1		362778	62079122	NM_001014198.1	RGD1308470	NP_001014220.1	ILMN_1352680	0005340086	S	1217	CCCCGGAAACCGTATCTTGGCCTGTGTTGGTTCTTACTCCGAACGTTTGT	6	+	129857741-129857790	6q32	Rattus norvegicus similar to RIKEN cDNA 4933433P14 gene (RGD1308470), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]	The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence IEA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718832-S	ILMN_65059	LOC503418	XM_580269.1	XM_580269.1		503418	62718832	XM_580269.1	LOC503418	XP_580269.1	ILMN_1367139	0006590438	S	34	GCTTGCTGATGGAATGTGGAGATGGAGGCCTTGCTGATAACCGACTGGCC					PREDICTED: Rattus norvegicus LOC503418 (LOC503418), mRNA.					
Rattus norvegicus	RefSeq	GI_62643604-S	ILMN_290343	EVI1_PREDICTED	XM_001065376.1	XM_001065376.1		294924	109466487	XM_001065376.1	Evi1_predicted	XP_001065376.1	ILMN_1355579	0000060168	S	531	GGGCCATACATGGGAGAGCAGAGATCAGACCTGAAAGATTCCAGCTATGG				2q24	PREDICTED: Rattus norvegicus ecotropic viral integration site 1 (predicted) (Evi1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663484-S	ILMN_57707	IRF4_PREDICTED	XM_225283.4	XM_225283.4		291100	109504790	XM_225283.4	Irf4_predicted	XP_225283.4	ILMN_1354706	0007100129	S	1080	CACGCAGCAGTTTCTATCAGAGCTACAAGTGTTTGCTCACCACGGCCGGC	17	-	40176081-40176111:40180640-40180658	17p12	PREDICTED: Rattus norvegicus interferon regulatory factor 4 (predicted) (Irf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799388-S	ILMN_290635	STAT3	NM_012747.2	NM_012747.2		25125	56799388	NM_012747.2	Stat3	NP_036879.1	ILMN_1373442	0001660315	S	4109	TGAGGGCTTCTCTGGGGCAGGTGTTGTACCTCAGGGGTTCTGGGAAGTCT	10	-	89821349-89821398	10q32.1	Rattus norvegicus signal transducer and activator of transcription 3 (Stat3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms [goid 1754] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IDA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]	MGC93551	MGC93551
Rattus norvegicus	RefSeq	GI_62650077-S	ILMN_269405	THAP3_PREDICTED	XM_001075997.1	XM_001075997.1		362667	109477744	XM_001075997.1	Thap3_predicted	XP_001075997.1	ILMN_1361991	0001660551	S	860	CCAACAGTCAGGTCTCCTGGGCTGAGGCTTTCAGCTGTGGGGCAACAACA				5q36	PREDICTED: Rattus norvegicus THAP domain containing, apoptosis associated protein 3 (predicted) (Thap3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661664-S	ILMN_54843	DOCK5_PREDICTED	XM_224311.4	XM_224311.4		305987	109501834	XM_224311.4	Dock5_predicted	XP_224311.4	ILMN_1356411	0005290017	S	5622	GGAGAGATGCCAAAGCCCCACCTCCACCCCCTCCAAAGGCTCGAAAATCA	15	-	47314991-47315040	15p12	PREDICTED: Rattus norvegicus dedicator of cytokinesis 5 (predicted) (Dock5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648812-S	ILMN_264626	CHMP5	NM_001025410.1	NM_001025410.1		297995	70912367	NM_001025410.1	Chmp5	NP_001020581.1	ILMN_1356094	0000510195	S	1186	CTGTCACTACTGCATCATGAGTTACTACTTTGATCCCATGGTTCCCTCGG	5	+	58359608-58359657	5q22	Rattus norvegicus chromatin modifying protein 5 (Chmp5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate, or extent of receptor recyling [goid 1919] [evidence ISS]; Any process that modulates the frequency, rate, or extent of receptor recyling [goid 1919] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence ISS]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1305968	RGD1305968
Rattus norvegicus	RefSeq	GI_62078698-S	ILMN_296263	SCCPDH	NM_001013985.1	NM_001013985.1		305021	62078698	NM_001013985.1	Sccpdh	NP_001014007.1	ILMN_1349324	0002680402	S	1252	GGCTGCCGTGACTTTCCTGAATGATGCCTCTGACCTTCCAAAAGGGGGCG	13	+	95370551-95370595:95371278-95371282	13q26	Rattus norvegicus saccharopine dehydrogenase (putative) (Sccpdh), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 6-(L-1,3-dicarboxypropyl)-L-lysine + NAD+ + H2O = L-glutamate + 2-aminoadipate 6-semialdehyde + NADH + H+ [goid 47131] [evidence IEA]	RGD1311440	RGD1311440
Rattus norvegicus	RefSeq	GI_62657242-S	ILMN_51557	HELZ_PREDICTED	XM_237808.4	XM_237808.4		287773	109489219	XM_237808.4	Helz_predicted	XP_237808.3	ILMN_1361338	0006650440	S	5963	CAAGTGACCCGGCTCGCGCTCTCCTCAGAGAATGTGCAGTTCCTGTTCAG	10	+	97090798-97090804:97090805-97090847	10q32.1	PREDICTED: Rattus norvegicus helicase with zinc finger domain (predicted) (Helz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648540-S	ILMN_278962	RGD1307055_PREDICTED	XM_001060285.1	XM_001060285.1		362472	109475965	XM_001060285.1	RGD1307055_predicted	XP_001060285.1	ILMN_1375146	0004050026	S	2549	AACGGTTCATGGCAGAGCAGCTGAATGAGGGACAGCAGCAGGTTCCTGGG				5q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22490 (predicted) (RGD1307055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559969-S	ILMN_52585	CLCN4-2	NM_022198.2	NM_022198.2		60586	76563947	NM_022198.2	Clcn4-2	NP_071534.2	ILMN_1373419	0002680725	S	2297	GAGCTGCCTGCCAACAGCCCACATCCACTGAAGCTGAGGCGCATTCTGAA	X	+	44409566-44409615	Xq21	Rattus norvegicus chloride channel 4-2 (Clcn4-2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]	MGC105433	MGC105433
Rattus norvegicus	RefSeq	GI_51948435-S	ILMN_276876	EDEM2	NM_001004230.1	NM_001004230.1		296304	51948435	NM_001004230.1	Edem2	NP_001004230.1	ILMN_1349891	0003520072	S	1518	GCACTGTTGCCGGAGGCTGAAGGAAGAGCAGTGGGAAGTGGAGGACTTGA	3	-	146215548-146215597	3q42	Rattus norvegicus ER degradation enhancer, mannosidase alpha-like 2 (Edem2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2) [goid 4571] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Edem2; MGC93956	Edem2; MGC93956
Rattus norvegicus	RefSeq	GI_21245111-S	ILMN_278662	HSPBP1	NM_139261.1	NM_139261.1		246146	21245111	NM_139261.1	Hspbp1	NP_640354.1	ILMN_1363343	0001230546	S	1168	AGCCCTACGGATGACAGCATGGATCGGTGAGACCAGGCGGCTTCTTGCAT	1	+	67905494-67905523:67905524-67905543	1q12	Rattus norvegicus hsp70-interacting protein (Hspbp1), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650026-S	ILMN_266303	RGD1563533_PREDICTED	XR_009017.1	XR_009017.1		313713	109477706	XR_009017.1	RGD1563533_predicted		ILMN_1365938	0001780541	S	3234	CTGGACGGAGCCATTAAACATGCGAATTTCCACTTCCGGACGGAGGGAGG				5q36	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1563533_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654864-S	ILMN_56038	LOC503242	XM_578773.1	XM_578773.1		503242	62654864	XM_578773.1	LOC503242	XP_578773.1	ILMN_1364928	0005910546	S	1538	CAGTTGGACAAGCCGGATAGGAGAGAACAGCGACTTCGGGCGGACTGGTT					PREDICTED: Rattus norvegicus similar to cytochrome c oxidase subunit VIc (LOC503242), mRNA.					
Rattus norvegicus	RefSeq	GI_62657485-S	ILMN_67774	SIRT7_PREDICTED	XM_221204.4	XM_221204.4		303745	109489504	XM_221204.4	Sirt7_predicted	XP_221204.4	ILMN_1365479	0002120082	S	1152	GGAGGCTGGTTCGGCAGGGGCTGTGCTAAGCGTGCAAAAAGGAAGAAAGC	10	-	110010163-110010212	10q32.3	PREDICTED: Rattus norvegicus sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae) (predicted) (Sirt7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850583-S	ILMN_301652	SLC16A13	NM_001005530.1	NM_001005530.1		287451	53850583	NM_001005530.1	Slc16a13	NP_001005530.1	ILMN_1375183	0006370164	S	1658	GCCTTAGGATTCTTGATCCATCTCCTCCAGAGCAGGCCCAGGGTTCCTCC	10	-	57056587-57056636	10q24	Rattus norvegicus solute carrier family 16, member 13 (monocarboxylic acid transporter 13) (Slc16a13), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644614	ILMN_301575	LOC679649	XM_001053861.1	XM_001053861.1		679649	109465727	XM_001053861.1	LOC679649	XP_001053861.1	ILMN_1650516	0006200408	S	1245	CATGGGTGATACTAGAAGCTATCCCAGAGAACAGGGAGGAAGGCCCATGG	2|NW_047635.1	+	882943-882984:883841-883848		PREDICTED: Rattus norvegicus similar to betaine-homocysteine methyltransferase 2 (LOC679649), mRNA.		The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine [goid 8898] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27669531	ILMN_66230	LOC299390	XM_234629.1	XM_234629.1		299390	27669531	XM_234629.1	LOC299390	XP_234629.1	ILMN_1650691	0005890059	S	351	CCCAGTGAAGGAAGTCCAGTGTGACCATGCACAAAAACTTCCCTACAGCG					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC299390), mRNA.					
Rattus norvegicus	RefSeq	GI_62645950-S	ILMN_281346	SNRPB2_PREDICTED	XM_001053334.1	XM_001053334.1		362223	109470906	XM_001053334.1	Snrpb2_predicted	XP_001053334.1	ILMN_1372965	0002370487	S	486	CTCAAGGAAATGCAGCACCAAATCCTCAGGTCCCTGATTACCCTCCAAAC				3q41	PREDICTED: Rattus norvegicus U2 small nuclear ribonucleoprotein B (predicted) (Snrpb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58219517-S	ILMN_277975	RND2	NM_001010953.1	NM_001010953.1		303553	58219517	NM_001010953.1	Rnd2	NP_001010953.1	ILMN_1356527	0006100154	S	1018	GGGTAGGCATCGGAGGCATGAACTTGGATAGGGCAGGTAGGTGTTCGGAA	10	+	90496719-90496768	10q32.1	Rattus norvegicus Rho family GTPase 2 (Rnd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]	Rohn; RhoN; Arhn	Rohn; RhoN; Arhn
Rattus norvegicus	RefSeq	GI_62642470	ILMN_65835	LOC502391	XM_577870.1	XM_577870.1		502391	62642470	XM_577870.1	LOC502391	XP_577870.1	ILMN_1650479	0002030577	S	1	ATGAGATTCTTAGGCACCTACAGTGCAACATCTGTCAACACCTCCAGTGC					PREDICTED: Rattus norvegicus similar to gastric mucin (LOC502391), mRNA.					
Rattus norvegicus	RefSeq	GI_62642700-S	ILMN_56929	RGD1309660_PREDICTED	XM_226652.4	XM_226652.4		309953	109464205	XM_226652.4	RGD1309660_predicted	XP_226652.4	ILMN_1368630	0001340427	S	1967	GCTTCTCCTAGGACTCCAGTAACTGACTGCTTTCCGTGGTGTTGTGGTAC	2	-	13467158-13467207	2q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33214 (predicted) (RGD1309660_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55925594-S	ILMN_264839	OS9	NM_001007265.1	NM_001007265.1		362891	55925594	NM_001007265.1	Os9	NP_001007266.1	ILMN_1352258	0006980670	S	2313	ACCCAGAGACTTGATGAGACCTTGTGCGTGGGAGTGGCAGGAACAGCAGG	7	-	67047056-67047105	7q22	Rattus norvegicus amplified in osteosarcoma (Os9), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94750	MGC94750
Rattus norvegicus	RefSeq	GI_13928909-S	ILMN_56627	GPRK6	NM_031657.1	NM_031657.1		59076	13928909	NM_031657.1	Gprk6	NP_113845.1	ILMN_1359434	0006180114	S	2276	TCTCAGTGTTTGTCAGAGCTGGAGACGGGGGCTTTGTGTTCTCCGGGCCT				17p14	Rattus norvegicus G protein-coupled receptor kinase 6 (Gprk6), mRNA.				GRK6	GRK6
Rattus norvegicus	RefSeq	GI_62652388	ILMN_274601	RNF19_PREDICTED	XM_001059414.1	XM_001059414.1		362900	109482122	XM_001059414.1	Rnf19_predicted	XP_001059414.1	ILMN_1649779	0003850452	S	187	ATCCCGCGGAGGCAAAACGCGGAGGAAGAACGGAGGACGGCTCTTCAGCA				7q22	PREDICTED: Rattus norvegicus ring finger protein (C3HC4 type) 19 (predicted) (Rnf19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652322-S	ILMN_274601	RNF19_PREDICTED	XM_001059414.1	XM_001059414.1		362900	109482122	XM_001059414.1	Rnf19_predicted	XP_001059414.1	ILMN_1367545	0000840037	S	4073	ACAAGGAAAATGTCCGGGCTGCAGTCTTGTACCGCCGTTCTCGCTGCGTC				7q22	PREDICTED: Rattus norvegicus ring finger protein (C3HC4 type) 19 (predicted) (Rnf19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58866039-S	ILMN_279546	PLCZ1	NM_001012234.1	NM_001012234.1		497197	58866039	NM_001012234.1	Plcz1	NP_001012234.1	ILMN_1363563	0005390066	S	1638	AGAAGTCTACGGTGTCCCAAACGACCACATGAAGCAGCAGAGTCGTGCCG	4	-	177099441-177099490	4q44	Rattus norvegicus phospholipase C, zeta 1 (Plcz1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby the egg becomes metabolically active, initiates protein and DNA synthesis and undergoes structural changes to its cortex and/or cytoplasm [goid 7343] [evidence ISS]; The process whereby the egg becomes metabolically active, initiates protein and DNA synthesis and undergoes structural changes to its cortex and/or cytoplasm [goid 7343] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate [goid 4629] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666629-S	ILMN_64051	LOC363453	XM_343775.2	XM_343775.2		363453	62666629	XM_343775.2	LOC363453	XP_343776.2	ILMN_1369594	0001770170	S	1629	TTGGGCGTTCTGGCTGGGCTAGTCATGGTCCCTGTGGCTTTGAACAGTGG				Xq13	PREDICTED: Rattus norvegicus similar to DXImx48e protein (LOC363453), mRNA.					
Rattus norvegicus	RefSeq	GI_62646268-S	ILMN_269388	EMILIN3_PREDICTED	XM_001069605.1	XM_001069605.1		362262	109471241	XM_001069605.1	Emilin3_predicted	XP_001069605.1	ILMN_1368647	0004920739	S	2165	TGCCGGGACACAGCCCAGGAACTCCAGCATACAGTGAGCCACTTTGACCA				3q42	PREDICTED: Rattus norvegicus elastin microfibril interfacer 3 (predicted) (Emilin3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665068-S	ILMN_275940	RGD1562546_PREDICTED	XM_001067081.1	XM_001067081.1		364953	109508507	XM_001067081.1	RGD1562546_predicted	XP_001067081.1	ILMN_1372546	0003520136	S	742	GAGGTGACTGCGGATGCGTCCTTAGGTGTAGAGGTGACTGTGGATGCGTC				19p11	PREDICTED: Rattus norvegicus similar to trophinin isoform 1 (predicted) (RGD1562546_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928869	ILMN_68103	VAPA	NM_031631.2	NM_031631.2		58857	61889096	NM_031631.2	Vapa	NP_113819.3	ILMN_1650890	0000670170	S	868	GGATCCACCTCAGCCGTGTCCTTCAGAGATAATGTCACCAGTCCTCTTCC	9	-	104339726-104339775	9q37	Rattus norvegicus vesicle-associated membrane protein, associated protein a (Vapa), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645939-S	ILMN_266285	RGD1309829_PREDICTED	XM_001080214.1	XM_001080214.1		296190	109470764	XM_001080214.1	RGD1309829_predicted	XP_001080214.1	ILMN_1351068	0001500450	S	963	TACCATGACTCTCAGGCAAGGCCAGCTGAAAGAGGTTCAGCAACCGTGTC				3q41	PREDICTED: Rattus norvegicus similar to dJ842G6.1.1 (novel protein) (predicted) (RGD1309829_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667513	ILMN_66645	RGD1564407_PREDICTED	XM_223440.4	XM_223440.4		305373	109511368	XM_223440.4	RGD1564407_predicted	XP_223440.4	ILMN_1650536	0003440687	S	2281	TTAGTTGTGGAGGCGGGGGGAGGGGTCAGCTGGCATGAGAAGTGTTTGGA	X	+	157032823-157032872	Xq37	PREDICTED: Rattus norvegicus similar to high mobility group protein homolog HMG4 (predicted) (RGD1564407_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649609-S	ILMN_265212	INPP5B	XM_001056372.1	XM_001056372.1		362590	109477202	XM_001056372.1	Inpp5b	XP_001056372.1	ILMN_1374985	0002350273	S	3411	GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATTCTGTACTGAGCATC				5q36	PREDICTED: Rattus norvegicus inositol polyphosphate-5-phosphatase B (Inpp5b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981699-S	ILMN_266055	VCAM1	NM_012889.1	NM_012889.1		25361	6981699	NM_012889.1	Vcam1	NP_037021.1	ILMN_1364472	0001190170	S	2561	GTCATTGCGAGGTCGTTTAGAGTAGTAGCACTCCAGATGTAGGTCAGAAC	2	-	212278048-212278097	2q41	Rattus norvegicus vascular cell adhesion molecule 1 (Vcam1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere [goid 22614] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process by which an organism has an effect on an organism of a different species [goid 44419] [evidence IEA]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence ISS]	Interacting selectively with an integrin [goid 5178] [evidence IMP]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108734; VCAM1B	MGC108734; VCAM1B
Rattus norvegicus	RefSeq	GI_62664187-S	ILMN_69286	REEP5_PREDICTED	XM_344661.3	XM_344661.3		364838	109506426	XM_344661.3	Reep5_predicted	XP_344662.2	ILMN_1352309	0002190632	S	1124	GCCAAGGAAGGTTGCAGACACCACCTGTGACCTGTGAAGCAAGATCCCCC	18	-	26815611-26815660	18p12	PREDICTED: Rattus norvegicus receptor accessory protein 5 (predicted) (Reep5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262185-S	ILMN_301940	TNFRSF12A	NM_181086.2	NM_181086.2		302965	54262185	NM_181086.2	Tnfrsf12a	NP_851600.1	ILMN_1373609	0007040112	S	752	CCACCCACTCGGATGGACTGAAATGCCACTACCCTGAGTTTTAGCCCTGG	10	-	12940499-12940548	10q12	Rattus norvegicus tumor necrosis factor receptor superfamily, member 12a (Tnfrsf12a), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of adhesions that stabilize protrusions at the leading edge of a migrating cell; involves integrin activation, clustering, and the recruitment of structural and signaling components to nascent adhesions [goid 6931] [evidence IEA]; The formation of adhesions that stabilize protrusions at the leading edge of a migrating cell; involves integrin activation, clustering, and the recruitment of structural and signaling components to nascent adhesions [goid 6931] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72653; Fn14	MGC72653; Fn14
Rattus norvegicus	RefSeq	GI_16758035-S	ILMN_262986	RPL21	NM_053330.1	NM_053330.1		79449	16758035	NM_053330.1	Rpl21	NP_445782.1	ILMN_1349782	0006510193	S	421	CTTAACGGCCAGCCTGCGCCACCCAGAGAAGCCCACTTTGTGAGGACTAA	12	-	8716758-8716796:8716936-8716946	12p11	Rattus norvegicus ribosomal protein L21 (Rpl21), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663249-S	ILMN_48656	LOC502112	XM_577553.1	XM_577553.1		502112	62663249	XM_577553.1	LOC502112	XP_577553.1	ILMN_1363165	0004200725	S	121	GTCCGGTTCGTATCCAGAAAACTGTCCAGATGGTTCCCAGAGGACGGTGT				17p14	PREDICTED: Rattus norvegicus similar to cathepsin Q2 (LOC502112), mRNA.					
Rattus norvegicus	RefSeq	GI_62641871-S	ILMN_289690	RGD1560328_PREDICTED	XM_001074464.1	XM_001074464.1		499317	109463525	XM_001074464.1	RGD1560328_predicted	XP_001074464.1	ILMN_2039023	0005700382	S	192	TGCCTGGTTCTTCGTTTACGAGGTCACCTCTACCAAGTACACGCGCGATG				1q43	PREDICTED: Rattus norvegicus similar to UPF0197 protein C11orf10 homolog (predicted) (RGD1560328_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653868-S	ILMN_51452	LOC367109	XM_345951.2	XM_345951.2		367109	62653868	XM_345951.2	LOC367109	XP_345952.2	ILMN_1364959	0006650168	S	369	AGCCGTCCCGAGACCGGTAGGCCTCAGCCCAAAGGTTGAGAGGGTAAGAA				8q24	PREDICTED: Rattus norvegicus hypothetical LOC367109 (LOC367109), mRNA.					
Rattus norvegicus	RefSeq	GI_62649931-S	ILMN_297022	KLHDC7A_PREDICTED	XR_008781.1	XR_008781.1		298590	109477587	XR_008781.1	Klhdc7a_predicted		ILMN_1370354	0006760139	S	2194	CTCTGGTATGAGTGTGCCACGTACCGCTTGCCTTACCCCGATGCCTTCCA				5q36	PREDICTED: Rattus norvegicus kelch domain containing 7A (predicted) (Klhdc7a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643991-S	ILMN_269177	TDPOZ1_PREDICTED	XM_001073003.1	XM_001073003.1		365854	109514269	XM_001073003.1	Tdpoz1_predicted	XP_001073003.1	ILMN_1354097	0002320368	S	489	GCCTGGAGAGAACATGACACCTGCAATCAAGGATTCAAGGCACATACTAA				2q34	PREDICTED: Rattus norvegicus TD and POZ domain containing 1 (predicted) (Tdpoz1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21245115-S	ILMN_277752	NRADD	NM_139259.1	NM_139259.1		246143	21245115	NM_139259.1	Nradd	NP_640352.1	ILMN_1363688	0001240136	S	796	AGGATGCTCTGACTGCCATAGGCCGAGAAGATGTGGTCCAGGTTTTGAGC	8	-	115002344-115002393	8q32	Rattus norvegicus neurotrophin receptor associated death domain (Nradd), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with the neurotrophin p75 receptor [goid 5166] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	PLAIDD	PLAIDD
Rattus norvegicus	RefSeq	GI_6981049-S	ILMN_288990	HSD3B5	NM_012584.1	NM_012584.1		24470	6981049	NM_012584.1	Hsd3b5	NP_036716.1	ILMN_1366884	0005340102	S	1541	GGGCTTGAGCTCCCACACTAGAGTCAGGAGGCAAAACCATGCTGAAGTTC	2	-	193250323-193250372	2q34	Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 (Hsd3b5), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IEA]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative [goid 16229] [evidence TAS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Hsd1; RATHSDI	Hsd1; RATHSDI
Rattus norvegicus	RefSeq	GI_62638468	ILMN_50966	LOC499009	XM_574302.1	XM_574302.1		499009	62638468	XM_574302.1	LOC499009	XP_574302.1	ILMN_1651151	0005670438	S	364	GCTGCTGGCAAAGGGAACATCCCAACTAAGAGACGGCCTGTCCTCCGAAC				1p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC499009), mRNA.					
Rattus norvegicus	RefSeq	GI_62655777-A	ILMN_268500	METRN	NM_001009962.1	NM_001009962.1		287151	58000408	NM_001009962.1	Metrn	NP_001009962.1	ILMN_1376785	0005360280	S	864	ATGTGAGGTGGCACTGGACTGAGAGACCTGGGAGCAAGCCCTGGATGGAT	10	-	15062092-15062120:15062121-15062141	10q12	Rattus norvegicus meteorin, glial cell differentiation regulator (Metrn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence IEA]		Hyrac; RGD1306222	Hyrac; RGD1306222
Rattus norvegicus	RefSeq	GI_24475744-S	ILMN_53263	CDC42BPB	NM_053620.2	NM_053620.2		113960	24475744	NM_053620.2	Cdc42bpb	NP_446072.1	ILMN_1370386	0002370435	S	5056	AGCCTGACTCTGACTCCACGAAGCACTCACTCCGTCCAACAGCTCCAACC				6q32	Rattus norvegicus Cdc42-binding protein kinase beta (Cdc42bpb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IMP]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IDA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34876554-S	ILMN_51191	RGD1561620_PREDICTED	XM_225507.3	XM_225507.3		291274	109505163	XM_225507.3	RGD1561620_predicted	XP_225507.3	ILMN_1355812	0003140019	S	71	CTGGAGAGTGTGACGGGATGCGGCTGGGTATGTTCCAGGCAAGCAAAACC	17	-	72354363-72354386:72355771-72355796	17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (predicted) (RGD1561620_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659516-S	ILMN_51751	LOC364020	XM_344157.2	XM_344157.2		364020	62659516	XM_344157.2	LOC364020	XP_344158.2	ILMN_1352260	0007050053	S	1975	CAGTCAGACATTTAGCAACACTTCCGATTCCACAGCGGCCTGGCAGACTC					PREDICTED: Rattus norvegicus similar to S100 calcium binding protein A11 (calizzarin) (LOC364020), mRNA.					
Rattus norvegicus	RefSeq	GI_62666408-S	ILMN_51025	LOC501503	XM_576904.1	XM_576904.1		501503	62666408	XM_576904.1	LOC501503	XP_576904.1	ILMN_1362324	0007000524	S	275	CCCTGGGCAGCACCCCACGAGCGAACTTGAGCCTCGGGATCACAGAAATA					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC501503), mRNA.					
Rattus norvegicus	RefSeq	GI_62663271-S	ILMN_51853	RGD1561671_PREDICTED	XM_341496.3	XM_341496.3		361214	109504679	XM_341496.3	RGD1561671_predicted	XP_341497.2	ILMN_1354777	0006660079	S	20	TGTGGCAGGAAGGCCACCCCAGTAGAAGCAAGGTAAAAAAGGTGGAGTCC	17	-	17636343-17636392	17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900010M23 (predicted) (RGD1561671_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24475715-S	ILMN_282870	MAP2K1	NM_031643.3	NM_031643.3		170851	24475715	NM_031643.3	Map2k1	NP_113831.1	ILMN_1361975	0005050685	S	1761	GAGCCCATCACTGCCATGATAGCTGGGGCTTCAGTCTGTCTACTGTGGTG	8	-	68379360-68379409	8q24	Rattus norvegicus mitogen activated protein kinase kinase 1 (Map2k1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; A cell projection part that is part of an axon [goid 33267] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; Any process that increases the frequency, rate or extent of vascular smooth muscle contraction [goid 3056] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any process that activates or increases the activity of a GTPase of the Ras superfamily [goid 32320] [evidence IMP]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II [goid 32968] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate, or extent of homotypic cell-cell adhesion [goid 34111] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence IDA]; The partitioning of Golgi apparatus between daughter cells at cell division [goid 48313] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence TAS]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence ISS]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IMP]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA];  [goid 4728] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any member of the Ras superfamily of monomeric GTPases [goid 17016] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IDA]	Mek1	Mek1
Rattus norvegicus	RefSeq	GI_62647953-A	ILMN_279639	CLEC4D	NM_001003707.1	NM_001003707.1		362432	51172597	NM_001003707.1	Clec4d	NP_001003707.1	ILMN_1376946	0003710458	S	208	CCACACAAGGCTAACATGCATCCTAGAGGAGCCACAGCCTGGAGCTACAG	4	+	159888066-159888115	4q42	Rattus norvegicus C-type lectin domain family 4, member d (Clec4d), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Mcl; Clecsf8	Mcl; Clecsf8
Rattus norvegicus	RefSeq	GI_40254780-S	ILMN_269240	GDI2	NM_017276.2	NM_017276.2		29662	40254780	NM_017276.2	Gdi2	NP_058972.2	ILMN_1361811	0006510546	S	2037	AGCACCTTTTATCCCAGGTATGGCTTCTTCAACGGACCAAGCTGCAATGC	17	-	77843578-77843627	17q12.3	Rattus norvegicus GDP dissociation inhibitor 2 (Gdi2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEP]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IEA]	Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding [goid 5093] [evidence IDA]; Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding [goid 5093] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence ISS]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence IDA]	Gdi3	Gdi3
Rattus norvegicus	RefSeq	GI_62650381-S	ILMN_272974	RGD1304963_PREDICTED	XM_001067282.1	XM_001067282.1		313891	109479031	XM_001067282.1	RGD1304963_predicted	XP_001067282.1	ILMN_1356728	0006220601	S	4073	GTAGCCAGGACAGATCCCAGCCAGAGTCACAGCCCCAGCACAAGGAAGTT				6q13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC38716 (predicted) (RGD1304963_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58866015-A	ILMN_297161	FBXO7	NM_001012222.1	NM_001012222.1		366854	58866015	NM_001012222.1	Fbxo7	NP_001012222.1	ILMN_1376597	0001410671	S	1681	TGCCCAAAGAGGGGTTAGGTGACTGCTGGTCTCTCCACTCTGGATTCCCC	7	-	19947560-19947609	7q13	Rattus norvegicus F-box protein 7 (Fbxo7), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence IEA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663494-S	ILMN_58338	OACT1_PREDICTED	XM_240636.4	XM_240636.4		306912	109504871	XM_240636.4	Oact1_predicted	XP_240636.4	ILMN_1365218	0001580528	S	1387	CCCTGGATTGATCCCACCAACAACCGAACGTTTTGGCCTAGTTACTGCAG	17	-	40858487-40858536	17p12	PREDICTED: Rattus norvegicus O-acyltransferase (membrane bound) domain containing 1 (predicted) (Oact1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8567351-S	ILMN_301587	CUGBP2	NM_017197.1	NM_017197.1		29428	8567351	NM_017197.1	Cugbp2	NP_058893.1	ILMN_1354742	0002810286	S	2071	GCAATTCTAACTCTGAAACCACGGGTGCCCCGAGAGCACTGCCTGGAGAA	17	+	83025247-83025296	17q12.3	Rattus norvegicus CUG triplet repeat, RNA binding protein 2 (Cugbp2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	Etr3	Etr3
Rattus norvegicus	RefSeq	GI_62649851-S	ILMN_50798	MYOM3_PREDICTED	XM_233562.4	XM_233562.4		313625	109475664	XM_233562.4	Myom3_predicted	XP_233562.4	ILMN_1370222	0006380215	S	4091	TCATCGAGAAGAATCGGGCTAAAGTGGTGAGGGGCTTGCCAGACGTGGCC	5	+	154588098-154588109:154589603-154589640	5q36	PREDICTED: Rattus norvegicus myomesin family, member 3 (predicted) (Myom3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758089-S	ILMN_263712	DFFB	NM_053362.1	NM_053362.1		84359	16758089	NM_053362.1	Dffb	NP_445814.1	ILMN_1367945	0002510435	S	920	AGTGCACATCGCCTGCCACAAGAAGACCACACACAAGCTGCAGTGCGACC	5	-	170751072-170751121	5q36	Rattus norvegicus DNA fragmentation factor, beta polypeptide (caspase-activated DNase) (Dffb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IDA]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The compaction of chromatin during apoptosis [goid 30263] [evidence ISS]; The compaction of chromatin during apoptosis [goid 30263] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence ISS]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]	Cad	Cad
Rattus norvegicus	RefSeq	GI_9506402-S	ILMN_265093	ARL4A	NM_019186.1	NM_019186.1		29308	9506402	NM_019186.1	Arl4a	NP_062059.1	ILMN_1351318	0004060044	S	773	TGAAGAGTGTCTACAGCCTGGTTTGCCTGTCTGCCCTCACGGATGCTATT	6	-	59212811-59212860	6q21	Rattus norvegicus ADP-ribosylation factor-like 4A (Arl4a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC108709; Arl4	MGC108709; Arl4
Rattus norvegicus	RefSeq	GI_62645627-S	ILMN_68029	RGD1561597_PREDICTED	XM_575215.2	XM_575215.2		499874	109468590	XM_575215.2	RGD1561597_predicted	XP_575215.2	ILMN_1353859	0005910288	S	9118	ACAGGAAGTGACCAGGAAGGCCGGGGGAGCAAGATGATGCCTACATTGGC	3	+	106474600-106474649	3q35	PREDICTED: Rattus norvegicus similar to mKIAA0518 protein (predicted) (RGD1561597_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162325-S	ILMN_286859	SLC27A5	NM_024143.1	NM_024143.1		79111	13162325	NM_024143.1	Slc27a5	NP_077057.1	ILMN_1350483	0005420044	S	2072	GTCTGATGCCAGATGTGTACCAGGCTGTGTGTGAAGGAACCTGGAAGCTC	1	+	72935035-72935084	1q21	Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 5 (Slc27a5), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reactions: (1) ATP + cholate + CoA = AMP + diphosphate + choloyl-CoA and (2) ATP + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate + CoA = AMP + diphosphate + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA [goid 47747] [evidence IDA]; Catalysis of the reactions: (1) ATP + cholate + CoA = AMP + diphosphate + choloyl-CoA and (2) ATP + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate + CoA = AMP + diphosphate + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA [goid 47747] [evidence IEA]	rBAL-1; BAL	rBAL-1; BAL
Rattus norvegicus	RefSeq	GI_62641158-S	ILMN_263094	LOC687334	XM_001078036.1	XM_001078036.1		687334	109462709	XM_001078036.1	LOC687334	XP_001078036.1	ILMN_1357646	0002760332	S	1930	AAAGACCATGACCCTTCCGTGTCTTCCCTGGAACAGTTGTCCGAATTGGG					PREDICTED: Rattus norvegicus similar to cytoskeleton associated protein 2 (LOC687334), mRNA.					
Rattus norvegicus	RefSeq	GI_62662796-S	ILMN_47858	LOC498645	XM_573927.1	XM_573927.1		498645	62662796	XM_573927.1	LOC498645	XP_573927.1	ILMN_1365532	0002470609	S	1194	CACCCAGGAGGAGTAGAGGGCAGGAAATAATCAAACTCAGAGCGGAAATC					PREDICTED: Rattus norvegicus similar to LRRGT00191 (LOC498645), mRNA.					
Rattus norvegicus	RefSeq	GI_62665301	ILMN_289563	TERF2IP	NM_001013143.1	NM_001013143.1		307861	61557081	NM_001013143.1	Terf2ip	NP_001013161.1	ILMN_1650919	0001170301	S	891	CCCACACCTGAGGAAGATTCAGAAACACAGCCAGACGAGGAGGAAGAGGA	19	+	41953660-41953709	19q12	Rattus norvegicus telomeric repeat binding factor 2, interacting protein (Terf2ip), mRNA.	The terminal region of a linear chromosome in the nucleus that includes the telomeric DNA repeats and associated proteins [goid 784] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA [goid 32205] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA [goid 32205] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with single-stranded telomere-associated DNA [goid 43047] [evidence ISS]; Interacting selectively with single-stranded telomere-associated DNA [goid 43047] [evidence ISS]	MGC105533	MGC105533
Rattus norvegicus	RefSeq	GI_62657910-S	ILMN_288554	UPK1B	NM_001024253.1	NM_001024253.1		303924	66730399	NM_001024253.1	Upk1b	NP_001019424.1	ILMN_1360729	0000070735	S	776	TCTGCTGGACCTTCTGGGTTCTCCTGGGCACCATGTTCTACTGGAGCAGA	11	+	63763761-63763771:63766372-63766410	11q21	Rattus norvegicus uroplakin 1B (Upk1b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62648525-S	ILMN_50985	LACTB2_PREDICTED	XM_216316.3	XM_216316.3		297768	62648525	XM_216316.3	Lactb2_predicted	XP_216316.1	ILMN_1372153	0006100433	S	1375	AGAGACTGTCTTCTACAGGAAGCCAAAAGGAAGCTCTCCCCACGTGGTGG				5q11	PREDICTED: Rattus norvegicus lactamase, beta 2 (predicted) (Lactb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865567-A	ILMN_281190	TMEM24	NM_001011996.1	NM_001011996.1		300666	58865567	NM_001011996.1	Tmem24	NP_001011996.1	ILMN_1376427	0003610070	S	2993	TCAGAAGACATTGGCAGATCATAGGAAGCCGGCCTAGTGCCCGGGATGGG	8	-	47289050-47289099	8q22	Rattus norvegicus transmembrane protein 24 (Tmem24), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	Unigene	Rn.8410	ILMN_161162	RN.8410	Rn.8410		Rn.8410		51610554	CV104092			ILMN_1530357	0001050056	S	481	ACTTTAAATTCCACCTTTGTGTGGTATGCCCAGAGATAAAAGAATGATAA					AGENCOURT_31539595 NIH_MGC_270 Rattus norvegicus cDNA clone IMAGE:7445094 5', mRNA					
Rattus norvegicus	RefSeq	GI_62666840-S	ILMN_275248	PPEF1	NM_001034935.1	NM_001034935.1		317498	77917563	NM_001034935.1	Ppef1	NP_001030107.1	ILMN_1360777	0005390014	S	1691	CGCATCTGGTAAGCACTGACTCCAGCGGAAGCGTCGACTACATGTCCAGC	X	+	55434063-55434112	Xq21	Rattus norvegicus protein phosphatase, EF-hand calcium binding domain 1 (Ppef1), mRNA.		The series of events involved in sensory perception in which a sensory stimulus is received by a cell and converted into a molecular signal [goid 50906] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	MGC125115	MGC125115
Rattus norvegicus	RefSeq	GI_62661524	ILMN_268365	RGD1563645_PREDICTED	XM_001059252.1	XM_001059252.1		498520	109502473	XM_001059252.1	RGD1563645_predicted	XP_001059252.1	ILMN_1650263	0002100093	S	491	GGCACAATGCCCATGTGAAGCCAGAGGATGGGTGCTACATGGCTGGTTGG					PREDICTED: Rattus norvegicus similar to granzyme C (predicted) (RGD1563645_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667439	ILMN_62811	RGD1559464_PREDICTED	XM_579037.2	XM_579037.2		503480	109511248	XM_579037.2	RGD1559464_predicted	XP_579037.2	ILMN_1650150	0003870692	S	378	GGACGTGTCTTTCCCATTATACCTCTTTTCTGGCGGTAGGACTTATAGCT	X	+	140904723-140904772	Xq36	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 48 (predicted) (RGD1559464_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62821821-S	ILMN_48657	PFKL	NM_013190.4	NM_013190.4		25741	77416374	NM_013190.4	Pfkl	NP_037322.1	ILMN_1369062	0006350091	S	2463	CTAGCCACAGATCCCAGCACTAAGGGGAACTCACATGGAACTCGGAGCCT	20	+	11032232-11032281	20p12	Rattus norvegicus phosphofructokinase, liver (Pfkl), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence ISS]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence ISS]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence TAS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_34880688-S	ILMN_161852	LOC367829	XM_346315.1	XM_346315.1			34880688	XM_346315.1	LOC367829		ILMN_2040351	0004290356	S	81	TCCAGTGGCAACTGATGAGGTTTCCACGTGGTTCGCCAACGCGGGCCGGC					Rattus norvegicus similar to iroquois-class homeobox protein Irx6 (LOC367829), mRNA.					
Rattus norvegicus	RefSeq	GI_62652979-S	ILMN_49123	PDZRN4_PREDICTED	XM_235598.4	XM_235598.4		315250	109481203	XM_235598.4	Pdzrn4_predicted	XP_235598.4	ILMN_1360417	0004610438	S	1	ATGGGCTTCGCTTTGGAGCGTTTCACGGAAGCCGTGGACCCCGCTTTCCA	7	+	130909407-130909456	7q35	PREDICTED: Rattus norvegicus PDZ domain containing RING finger 4 (predicted) (Pdzrn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652945-S	ILMN_49123	PDZRN4_PREDICTED	XM_235598.4	XM_235598.4		315250	109481203	XM_235598.4	Pdzrn4_predicted	XP_235598.4	ILMN_1354276	0002120497	S	3572	GTGTGGGTGGACAATCTTCCCGTGATATGTAGTGACACTGGTCATGTAGC	7	+	131265077-131265126	7q35	PREDICTED: Rattus norvegicus PDZ domain containing RING finger 4 (predicted) (Pdzrn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758515-S	ILMN_276062	CCL28	NM_053700.1	NM_053700.1		114492	16758515	NM_053700.1	Ccl28	NP_446152.1	ILMN_1364159	0005340181	S	1095	TTGAAGGCTTGCTTGTTCTTCATCCTGTGGTGCTCCTGGGAAGCAGTGGG	2	+	51712682-51712731	2q16	Rattus norvegicus chemokine (C-C motif) ligand 28 (Ccl28), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scya28	Scya28
Rattus norvegicus	RefSeq	GI_47576896-S	ILMN_275553	OLR807	NM_001000851.1	NM_001000851.1		405141	47576896	NM_001000851.1	Olr807	NP_001000851.1	ILMN_1367391	0001170546	S	713	ACACTTGTGCCTCTCATCTTACTATGGTTGTCCTATGCTACGGCATGGCC	4	+	70641159-70641208	4q23	Rattus norvegicus olfactory receptor 807 (Olr807), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr807	Olr807
Rattus norvegicus	RefSeq	GI_16758709-S	ILMN_274466	OPCML	NM_053848.1	NM_053848.1		116597	16758709	NM_053848.1	Opcml	NP_446300.1	ILMN_1349652	0006200129	S	1858	GCCTAAAAAATGTCCCATGACACGCACCCTGAAGGTACAACTTGGCCCAC	8	+	28508582-28508631	8q13	Rattus norvegicus opioid binding protein/cell adhesion molecule-like (Opcml), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645674-S	ILMN_70194	RGD1562232_PREDICTED	XM_575221.2	XM_575221.2		499878	109468720	XM_575221.2	RGD1562232_predicted	XP_575221.1	ILMN_1371835	0002190022	S	987	GGCGTGGAAAGTCCGAGAGCTCAAAAGAATCAAGCGGGACAGAGAGGACC	3	-	108274873-108274922	3q35	PREDICTED: Rattus norvegicus similar to microfibrillar-associated protein 1 (predicted) (RGD1562232_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639620-S	ILMN_268421	KLK11_PREDICTED	XM_001080415.1	XM_001080415.1		292849	109461834	XM_001080415.1	Klk11_predicted	XP_001080415.1	ILMN_1369834	0000050458	S	903	CCTCAGCTGGGACCCTTGCATGTATCTCTCCGACCTACCACGAATATGAT				1q22	PREDICTED: Rattus norvegicus kallikrein 11 (predicted) (Klk11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663875-S	ILMN_51667	SFMBT2_PREDICTED	XM_225556.3	XM_225556.3		307106	62663875	XM_225556.3	Sfmbt2_predicted	XP_225556.3	ILMN_1362995	0002100750	S	3422	TGGAGACACAGAGGATATTAAGGCTATGCAGTTCCCCCCTAACCCCGGAG				17q12.3	PREDICTED: Rattus norvegicus Scm-like with four mbt domains 2 (predicted) (Sfmbt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645880-S	ILMN_272634	ITPA_MAPPED	XM_001081181.1	XM_001081181.1		311422	109470833	XM_001081181.1	Itpa_mapped	XP_001081181.1	ILMN_1361247	0002850722	S	737	GAGGAGCGGCTGGCTCTACACCAGAGAACTCAGGGCCAGGTGACACTAAA				3q36	PREDICTED: Rattus norvegicus inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (mapped) (Itpa_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62661744-S	ILMN_58958	LOC306038	XM_224366.3	XM_224366.3		306038	62661744	XM_224366.3	LOC306038	XP_224366.3	ILMN_1361291	0003440037	S	4372	CTAGCCATGCGAACCGCCAGACATCCCCATTCCATGAGAGAGCGCATCAC				15q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31846 (predicted) (LOC306038), mRNA.					
Rattus norvegicus	RefSeq	GI_34857603-S	ILMN_57739	MESP1_PREDICTED	XM_218826.2	XM_218826.2		308766	34857603	XM_218826.2	Mesp1_predicted	XP_218826.2	ILMN_1371409	0001050154	S	861	CTGGCACCGGGACAGGTGTTGATTGTGGCGCTGTTCATTCTTGTAGCTCT				1q31	PREDICTED: Rattus norvegicus mesoderm posterior 1 (predicted) (Mesp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978794-S	ILMN_286152	EEF2K	NM_012947.1	NM_012947.1		25435	6978794	NM_012947.1	Eef2k	NP_037079.1	ILMN_1366045	0006550576	S	4716	GCTAGCACTTGGAGGCCGAGGCTGGATTATGAGTTTGAAGCCACCCTGGA	1	+	179756597-179756646	1q35	Rattus norvegicus eukaryotic elongation factor-2 kinase (Eef2k), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of eukaryotic elongation factor-2 [goid 4686] [evidence IMP]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	SMEF2K	SMEF2K
Rattus norvegicus	RefSeq	GI_62645885	ILMN_57474	LOC499892	XM_575238.1	XM_575238.1		499892	62645885	XM_575238.1	LOC499892	XP_575238.1	ILMN_1649732	0006590056	S	1533	GGCTGCAGTTTATGAGGCAGACACTACTGTATATGGCCCAGTCAGTCTGC					PREDICTED: Rattus norvegicus LOC499892 (LOC499892), mRNA.					
Rattus norvegicus	RefSeq	GI_20302094-S	ILMN_266241	C1S	NM_138900.1	NM_138900.1		192262	20302094	NM_138900.1	C1s	NP_620255.1	ILMN_1367457	0006900593	S	2705	TCGACAGGTTGTCTGAAACACTATGCAGTCAGGGAACACAGCCTTTTTTC	4	-	160736277-160736326	4q42	Rattus norvegicus complement component 1, s subcomponent (C1s), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEP]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	r-gsp	r-gsp
Rattus norvegicus	RefSeq	GI_61889095-S	ILMN_70152	SMPD2	NM_031360.2	NM_031360.2		83537	61889095	NM_031360.2	Smpd2	NP_112650.1	ILMN_1365029	0002570040	S	1358	TGGGGGCAGGCGCAGTCTACCTGTTCCACAAGCAGGAGGCCAAAAGCTTA	20	-	45448917-45448966	20q12	Rattus norvegicus sphingomyelin phosphodiesterase 2, neutral (Smpd2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IMP]; The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid [goid 46513] [evidence IDA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IDA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence ISS]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	nSMase	nSMase
Rattus norvegicus	RefSeq	GI_62655053-S	ILMN_275074	RGD1304775_PREDICTED	XM_001066248.1	XM_001066248.1		316399	109487144	XM_001066248.1	RGD1304775_predicted	XP_001066248.1	ILMN_1357852	0004150093	S	2945	GGCAGGAGCTAGAAAGCCGATGCAAGGACCTGGAAGACACCATCAGACAC				9q31	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434P055 (predicted) (RGD1304775_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978762-S	ILMN_289392	DLG1	NM_012788.1	NM_012788.1		25252	6978762	NM_012788.1	Dlg1	NP_036920.1	ILMN_1349540	0005890450	S	3052	GGAGCAGGAGTTCACTGAGCATTTCACAGCTATTGTCCAGGGAGACACGC	11	-	70735439-70735458:70738604-70738633	11q22	Rattus norvegicus discs, large homolog 1 (Drosophila) (Dlg1), mRNA.	An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence TAS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1771] [evidence ISS]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence ISS]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence ISS]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]; Any process that contributes to cytokine production by a T cell [goid 2369] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes [goid 31579] [evidence ISS]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The chemical reactions and pathways involving amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42982] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of a tissue are generated and organized. Morphogenesis pertains to the creation of form [goid 48729] [evidence ISS]; The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure [goid 48745] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes [goid 60022] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with any phosphatase [goid 19902] [evidence ISS]; Interacting selectively with any phosphatase [goid 19902] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Functions to provide a physical support for the assembly of a multiprotein complex [goid 32947] [evidence ISS]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with a metabotropic glutamate receptor. Metabotropic glutamate receptors are G-protein coupled receptors that bind glutamate and exert an effect through the regulation of enzyme activity [goid 35256] [evidence IMP]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	Dlg1; SAP97	Dlg1; SAP97
Rattus norvegicus	RefSeq	GI_62665572-S	ILMN_277407	OLR1729_PREDICTED	XM_001074863.1	XM_001074863.1		294186	109509700	XM_001074863.1	Olr1729_predicted	XP_001074863.1	ILMN_1355070	0000630139	S	325	TTCTTCCACTTCCTGGGTAGCACAGAGGCTTTACTGCTGACAATCATGGC				20p12	PREDICTED: Rattus norvegicus olfactory receptor 1729 (predicted) (Olr1729_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27229303-S	ILMN_287944	ELAC2	NM_172326.1	NM_172326.1		282826	27229303	NM_172326.1	Elac2	NP_758829.1	ILMN_1361657	0000380465	S	2595	CCACATCTGTCATCTTGGGAGCCAGCGCACACAATCTAGCCAGGAGGAAC	10	+	51312780-51312829	10q24	Rattus norvegicus elaC homolog 2 (E. coli) (Elac2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648760-S	ILMN_62406	LOC313125	XM_232858.3	XM_232858.3		313125	62648760	XM_232858.3	LOC313125	XP_232858.3	ILMN_1350062	0005340706	S	4157	AGGACCTGCTTCTTTGAAGGGCACAGCTAACCCACCACCCGGCTTTCCTG				5q21	PREDICTED: Rattus norvegicus similar to BTB and CNC homology 1, basic leucine zipper transcription factor 2 (LOC313125), mRNA.					
Rattus norvegicus	RefSeq	GI_62648135-S	ILMN_262970	RGD1307916_PREDICTED	XM_001061970.1	XM_001061970.1		362433	109474188	XM_001061970.1	RGD1307916_predicted	XP_001061970.1	ILMN_1373083	0004570546	S	243	TCAGACCCCTGGGAGAGAAGCTCCAAGAAAAGAGACAACTGGTGGGAGAG				4q42	PREDICTED: Rattus norvegicus LOC362433 (predicted) (RGD1307916_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34867850-S	ILMN_266780	LOC689443	XM_001070809.1	XM_001070809.1		689443	109481149	XM_001070809.1	LOC689443	XP_001070809.1	ILMN_2040813	0004610487	S	717	CCTGCAGTTTGCCTTTCGCTGGATGAACAACCTGCTGATGCGGGAGCTGC	7	+	124386651-124386700	7q34	PREDICTED: Rattus norvegicus similar to TBC1 domain family member 22A (LOC689443), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643483	ILMN_263107	LOC681542	XM_001057364.1	XM_001057364.1		681542	109466640	XM_001057364.1	LOC681542	XP_001057364.1	ILMN_1650000	0003850139	S	619	AACAAACCACTGCAGGAGAGTGGTCCGAAGCATCAAGTAGCCTGAGGTCC					PREDICTED: Rattus norvegicus similar to COMM domain-containing protein 2 (LOC681542), mRNA.					
Rattus norvegicus	RefSeq	GI_13242296-S	ILMN_291053	NR4A1	NM_024388.1	NM_024388.1		79240	13242296	NM_024388.1	Nr4a1	NP_077364.1	ILMN_1361354	0000510619	S	2227	AATACAGAAAGGAAGAGGTCGGGGTGGGGGTTTGAGAGGAAGGGTGGGCC	7	+	140020333-140020382	7q36	Rattus norvegicus nuclear receptor subfamily 4, group A, member 1 (Nr4a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Nur77; HMR; Ngfi-b	Nur77; HMR; Ngfi-b
Rattus norvegicus	RefSeq	GI_62661501-S	ILMN_264652	MCPT4L1	XM_001056983.1	XM_001056983.1		408208	109502429	XM_001056983.1	Mcpt4l1	XP_001056983.1	ILMN_1362667	0002470278	S	540	GAGGGAGATCAAACTGAGAAAGGAAAAGGAGGCCTGTAAGGACTATAGGC				15p13	PREDICTED: Rattus norvegicus mast cell protease 4-like 1 (Mcpt4l1), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654812-S	ILMN_270579	PRIM2	NM_001024762.1	NM_001024762.1		301323	67078419	NM_001024762.1	Prim2	NP_001019933.1	ILMN_1355020	0001190204	S	1639	GAAGGAAGCAAGCCACCCAGAAACGCCTCAGCACAAACCCAGCACCCAGA	9	-	32206698-32206747	9q21	Rattus norvegicus DNA primase, p58 subunit (Prim2), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IEA]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence NAS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis [goid 6269] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis [goid 6269] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence IEA]	Pola3	Pola3
Rattus norvegicus	RefSeq	GI_34854146-S	ILMN_283399	RGD1560158_PREDICTED	XM_342191.1	XM_342191.1		361894	34854146	XM_342191.1	RGD1560158_predicted	XP_342192.1	ILMN_1356431	0003140546	S	203	CCGAGGTAGACTATGAAGCAGGAGACATCCCAACAGAGTGGGAAGCATGG	2	-	39297116-39297121:39307355-39307398	2q14	PREDICTED: Rattus norvegicus RGD1560158 (predicted) (RGD1560158_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27665245-S	ILMN_266960	LOC683907	XM_001068011.1	XM_001068011.1		683907	109490532	XM_001068011.1	LOC683907	XP_001068011.1	ILMN_2040576	0002070747	S	816	TGAGGACGAGGAGTCTGATCACAACTGATGGCGGGTGGGGCAGGGGACTT					PREDICTED: Rattus norvegicus similar to eukaryotic translation initiation factor 4, gamma 1 isoform a (LOC683907), mRNA.					
Rattus norvegicus	RefSeq	GI_62667203-S	ILMN_49478	LOC302340	XM_228468.3	XM_228468.3		302340	62667203	XM_228468.3	LOC302340	XP_228468.3	ILMN_1371896	0003780050	S	522	CAAGACGACTGCTACTCCATGACACACTCCGGCTGCATCCTCATCAGACA				Xq32	PREDICTED: Rattus norvegicus similar to beta-actin (LOC302340), mRNA.					
Rattus norvegicus	RefSeq	GI_55742830-S	ILMN_280483	APOBEC1	NM_012907.2	NM_012907.2		25383	55742830	NM_012907.2	Apobec1	NP_037039.1	ILMN_1368847	0001940487	S	770	CTGTGGGGAGTGCTCCAGGGCCATTACAGAATTTTTGAGCCGATACCCCC	4	-	159036208-159036257	4q42	Rattus norvegicus apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 (Apobec1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence NAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [evidence IDA]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [evidence ISS]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [evidence IEA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IDA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence ISS]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside [goid 46087] [evidence IC ]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IDA]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IDA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence NAS]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence IDA]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	REPR	REPR
Rattus norvegicus	RefSeq	GI_62657142-S	ILMN_68735	UBTF	XM_340913.3	XM_340913.3		25574	109489109	XM_340913.3	Ubtf	XP_340914.1	ILMN_1359692	0005910592	S	2906	GGCATGGACAGTGGACCGGAGAGTTTGGGGGTGGGAGCGTGTTCTAAAGA	10	-	91385713-91385762	10q32.1	PREDICTED: Rattus norvegicus upstream binding transcription factor, RNA polymerase I (Ubtf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577784-S	ILMN_270639	OLR1239	NM_001000811.1	NM_001000811.1		405097	47577784	NM_001000811.1	Olr1239	NP_001000811.1	ILMN_1363032	0001170441	S	763	AGTGCATTTGCATATTTCAAATCCTCCTCAGCTGGGTCTTGGGATGAAGG	8	+	40599369-40599418	8q22	Rattus norvegicus olfactory receptor 1239 (Olr1239), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1239	Olr1239
Rattus norvegicus	RefSeq	GI_62662626-S	ILMN_288197	RGD1562856_PREDICTED	XR_007515.1	XR_007515.1		498627	109514066	XR_007515.1	RGD1562856_predicted		ILMN_1373462	0004730093	S	257	AAGGTGTGGAGGGCAGAGCCAGGGAGGAGTGAGAATGTCTTGGGACCGGA				16p11	PREDICTED: Rattus norvegicus similar to nidogen 2 protein (predicted) (RGD1562856_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861271-A	ILMN_51138	H19	XR_000314.1	XR_000314.1		309122	62641651	XR_000314.1	H19		ILMN_1376550	0002340368	S	619	CCTGCCTCAGGAATCGGCTCGAAGGTAAAGCTGAAGGAACAGACGGTGAC					PREDICTED: Rattus norvegicus H19 fetal liver mRNA (H19), misc RNA.		Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62641651-I	ILMN_51138	H19	XR_000314.1	XR_000314.1		309122	62641651	XR_000314.1	H19		ILMN_1375895	0003610152	S	34	TCATGACAGGACGAGTGCGGGTGCGGGGTGAGGCGAACGTGCGCTGGAAA					PREDICTED: Rattus norvegicus H19 fetal liver mRNA (H19), misc RNA.		Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62660123-S	ILMN_286408	LOC498331	XM_001059696.1	XM_001059696.1		498331	109500257	XM_001059696.1	LOC498331	XP_001059696.1	ILMN_1365973	0005130672	S	7902	GGACCGGACAAAGCAGGTCTTAGGGCTGGAGACAGCATTTGATCATAGTG				14p22	PREDICTED: Rattus norvegicus similar to protein Tyr phosphatase (LOC498331), mRNA.					
Rattus norvegicus	RefSeq	GI_62660125-S	ILMN_286408	LOC498331	XM_001059696.1	XM_001059696.1		498331	109500257	XM_001059696.1	LOC498331	XP_001059696.1	ILMN_1351444	0003610093	S	6663	CCCGTCAAAGAGGAAGCCACGCAGGAAAGCAGAGAGTCGACAACGGAGAC				14p22	PREDICTED: Rattus norvegicus similar to protein Tyr phosphatase (LOC498331), mRNA.					
Rattus norvegicus	RefSeq	GI_62650927-S	ILMN_61435	RGD1566139_PREDICTED	XM_229709.4	XM_229709.4		302133	109478410	XM_229709.4	RGD1566139_predicted	XP_229709.3	ILMN_1349045	0004850494	S	937	TCAAAATGTGGCCCATGAGGTTCTGTGCCTGGAGATGCTCACTTTGCTGC	6	-	103548468-103548517	6q24	PREDICTED: Rattus norvegicus similar to Ac2-155 (predicted) (RGD1566139_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393414-S	ILMN_292869	GAP43	NM_017195.1	NM_017195.1		29423	8393414	NM_017195.1	Gap43	NP_058891.1	ILMN_1356366	0005670114	S	1167	CTTGCACTGTACCCCGGTTTTTTGATCTGGTGCGTGTGGCCCTGTGGGAG	11	+	60083655-60083704	11q21	Rattus norvegicus growth associated protein 43 (Gap43), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence TAS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The recognition of molecules at a choice point by an axon growth cone; at a choice point the growth cone determines the direction of its future growth [goid 16198] [evidence ISS]; The recognition of molecules at a choice point by an axon growth cone; at a choice point the growth cone determines the direction of its future growth [goid 16198] [evidence IEA]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]	Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	Basp2	Basp2
Rattus norvegicus	RefSeq	GI_31542414-S	ILMN_297225	CPA1	NM_016998.2	NM_016998.2		24269	31542414	NM_016998.2	Cpa1	NP_058694.1	ILMN_1365546	0002690162	S	1540	TGGACCACACAGTCAAACACCCCTACTGAAAGCAGCCCTTATCCCCCACC	4	+	57555294-57555322:57555323-57555343	4q22	Rattus norvegicus carboxypeptidase A1 (Cpa1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence TAS]	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain, in a reaction that requires a free N-terminal amino group, C-terminal carboxyl group or both [goid 8238] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647187	ILMN_269966	REPIN1	NM_001005893.1	NM_001005893.1		445541	54312115	NM_001005893.1	Repin1	NP_001005893.1	ILMN_1650033	0004050037	S	1589	CTTCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCT	4	+	76690013-76690062	4q24	Rattus norvegicus replication initiator 1 (Repin1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ap-4; Ap4	Ap-4; Ap4
Rattus norvegicus	RefSeq	GI_16758147-S	ILMN_293046	SNX1	NM_053411.1	NM_053411.1		84471	16758147	NM_053411.1	Snx1	NP_445863.1	ILMN_1369110	0001300035	S	1632	AGGGCCATCTCCTGAGGGACCAAGGAGACCAGAGCCTACCTTCGTGACGC	8	-	70370682-70370717:70370718-70370731	8q24	Rattus norvegicus sorting nexin 1 (Snx1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IPI]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	MGC105373	MGC105373
Rattus norvegicus	RefSeq	GI_62640961-S	ILMN_285020	XRRA1_PREDICTED	XM_001066474.1	XM_001066474.1		365313	109462491	XM_001066474.1	Xrra1_predicted	XP_001066474.1	ILMN_1351187	0004920390	S	2389	GTGTTGCAGCGGCGTGGACAGCAGCGACTAGTGAACCAGAAGCAATACCG					PREDICTED: Rattus norvegicus X-ray radiation resistance associated 1 (predicted) (Xrra1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640959-S	ILMN_285020	XRRA1_PREDICTED	XM_001066474.1	XM_001066474.1		365313	109462491	XM_001066474.1	Xrra1_predicted	XP_001066474.1	ILMN_1357242	0006770377	S	1104	CCTACAACAGGTTCAGCTCCGTGATGGGACAGGGGACTGGGTTACAGAGG					PREDICTED: Rattus norvegicus X-ray radiation resistance associated 1 (predicted) (Xrra1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538848-S	ILMN_282337	SVS2	NM_012710.2	NM_012710.2		25013	40538848	NM_012710.2	Svs2	NP_036842.2	ILMN_1355000	0002230673	S	1214	AGGGAGGGGCAGGCCTATATCAGGCTCAACTTAAGGGATAACATATTCAC	3	-	155180628-155180637:155180638-155180677	3q42	Rattus norvegicus seminal vesicle secretory protein 2 (Svs2), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]	The act of sexual union between male and female, involving the transfer of sperm [goid 7620] [evidence IEA]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Svs2p2; SVPIIA; RATSVPIIA	Svs2p2; SVPIIA; RATSVPIIA
Rattus norvegicus	RefSeq	GI_62654794-S	ILMN_52638	COL9A1	XM_223124.4	XM_223124.4		305104	109485890	XM_223124.4	Col9a1	XP_223124.4	ILMN_1365064	0002350072	S	2768	CTGCCAGCTATGGGAAAAATGGCCGAGATGGAGAGCAAGGTCCCCCAGGA	9	+	22989862-22989911	9q13	PREDICTED: Rattus norvegicus procollagen, type IX, alpha 1 (Col9a1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	A homeostatic process involved in the maintenance of an internal equilibrium within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function [goid 1894] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639190-S	ILMN_281157	CYP2S1	XM_001077464.1	XM_001077464.1		308445	109461496	XM_001077464.1	Cyp2s1	XP_001077464.1	ILMN_1358204	0004810440	S	431	AGCTCTCTGACGGGAAAGCTAGAGTGGAGCAAGGAAAAGCCAACCATGCC				1q21	PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily s, polypeptide 1 (Cyp2s1), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644422-S	ILMN_266578	NFKB1	XM_001075876.1	XM_001075876.1		81736	109467593	XM_001075876.1	Nfkb1	XP_001075876.1	ILMN_1367023	0005130253	S	2609	TGGAGGCCCTGCGACAGATGGGCTACACAGAGGCCATTGAAGTGATCCAG				2q43	PREDICTED: Rattus norvegicus nuclear factor of kappa light chain gene enhancer in B-cells 1, p105 (Nfkb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45083] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62651274-S	ILMN_277015	RGD1307749_PREDICTED	XM_001071760.1	XM_001071760.1		299338	109480016	XM_001071760.1	RGD1307749_predicted	XP_001071760.1	ILMN_1362805	0004150139	S	2324	ATGCTCAGCCAGGGGGAACCAAGAGATGAGGCATCCCAGGCATTTGTGGG				6q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1600013K19 (predicted) (RGD1307749_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646364-I	ILMN_58389	NEURL2_PREDICTED	XM_230848.4	XM_230848.4		311633	109469239	XM_230848.4	Neurl2_predicted	XP_230848.2	ILMN_1375676	0004210050	S	118	GACTTCCAGTCCAAAGGCGGCTCCAGGAGAGCAAGGACACAAGGAAGCAG	3	-	155866229-155866278	3q42	PREDICTED: Rattus norvegicus neuralized-like 2 (Drosophila) (predicted) (Neurl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646363-S	ILMN_58389	NEURL2_PREDICTED	XM_230848.4	XM_230848.4		311633	109469239	XM_230848.4	Neurl2_predicted	XP_230848.2	ILMN_1350548	0001570019	S	1148	CGCTGTGGTAGATGTGTTTGCCTCCACCAAGAGTGTGCGCCTGGTCCAAC	3	-	155865199-155865248	3q42	PREDICTED: Rattus norvegicus neuralized-like 2 (Drosophila) (predicted) (Neurl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647842-S	ILMN_63121	LOC500258	XM_575608.1	XM_575608.1		500258	62647842	XM_575608.1	LOC500258	XP_575608.1	ILMN_1358723	0006370538	S	2430	CCTGTTTTGAAGAAGGCTTGAGTCAGCAAAGGGGTGTGGAGCTGCCCCTG				4q34	PREDICTED: Rattus norvegicus similar to chromosome 3 open reading frame 20 (LOC500258), mRNA.					
Rattus norvegicus	RefSeq	GI_47577586-S	ILMN_279449	OLR527	NM_001000675.1	NM_001000675.1		404878	47577586	NM_001000675.1	Olr527	NP_001000675.1	ILMN_1362934	0005570301	S	467	CCTCTGTCACTGTGTTTGGCATGAGTAACCTGCATTTCTGCAAGTCCAAC	3	-	70252916-70252965	3q24	Rattus norvegicus olfactory receptor 527 (Olr527), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr527	Olr527
Rattus norvegicus	RefSeq	GI_34859196-S	ILMN_270777	LOC688103	XM_001081142.1	XM_001081142.1		688103	109470812	XM_001081142.1	LOC688103	XP_001081142.1	ILMN_1371046	0003060397	S	273	CTCCGTGATTGGCTTCGTGTGGTCGCATCTGACAAGGAGACTTATGAACT					PREDICTED: Rattus norvegicus similar to ribosomal protein L22 like 1 (LOC688103), mRNA.					
Rattus norvegicus	RefSeq	GI_62657370-S	ILMN_275582	EVPL_PREDICTED	XM_001081714.1	XM_001081714.1		303687	109492265	XM_001081714.1	Evpl_predicted	XP_001081714.1	ILMN_1367755	0006040594	S	6003	CCAGCTACGAGAAGGATTTGACAGACCCCATCACCAAGGAGAGGCTGAGC				10q32.3	PREDICTED: Rattus norvegicus envoplakin (predicted) (Evpl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577950-S	ILMN_267991	OLR1122	NM_001000882.1	NM_001000882.1		405181	47577950	NM_001000882.1	Olr1122	NP_001000882.1	ILMN_1373146	0005860156	S	757	GGTACAGCATTGGGTGTTTATATTAGCTCTGCAGTCACGACCTCAGTCAC	8	-	16883134-16883183	8q13	Rattus norvegicus olfactory receptor 1122 (Olr1122), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1122	Olr1122
Rattus norvegicus	RefSeq	GI_62661080-S	ILMN_56973	RGD1560592_PREDICTED	XM_577379.2	XM_577379.2		501952	109501246	XM_577379.2	RGD1560592_predicted	XP_577379.2	ILMN_1368158	0002690736	S	5	GAAAATTCATCAATCTGCTCCGGCAGTCCCAGTCCTATTGCACCAACACA	15	+	5528439-5528488	15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (predicted) (RGD1560592_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078762-S	ILMN_278774	RGD1311107	NM_001014016.1	NM_001014016.1		308428	62078762	NM_001014016.1	RGD1311107	NP_001014038.1	ILMN_1372540	0004200059	S	1490	AATGCAGTGGAAAAGCGGAGCAGTGGGGAAGGAACCAGCGAGGAAGCCCC	1	-	79675200-79675249	1q21	Rattus norvegicus similar to hypothetical protein R30953_1 (RGD1311107), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638760-S	ILMN_65304	LOC365128	XM_344829.2	XM_344829.2		365128	62638760	XM_344829.2	LOC365128	XP_344830.2	ILMN_1366440	0004670735	S	1837	GCTGCACAGCCCAGGCACAGCAAAATGCTCATCCAAAAGGAGGCAAAAGA					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365128), mRNA.					
Rattus norvegicus	RefSeq	GI_8393128-S	ILMN_292260	CHRNE	NM_017194.1	NM_017194.1		29422	8393128	NM_017194.1	Chrne	NP_058890.1	ILMN_1359490	0006940309	S	1293	GCCCCTGAAGTCCGCTGCTGTGTGGATGCTGTGAACTTTGTGGCTGAGAG	10	-	57497544-57497593	10q24	Rattus norvegicus cholinergic receptor, nicotinic, epsilon (Chrne), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]	 [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560001-S	ILMN_297265	AMPH	NM_022217.1	NM_022217.1		60668	11560001	NM_022217.1	Amph	NP_071553.1	ILMN_1359382	0006980132	S	1888	ACCCTACAAAGGGGTGATGTGGTGCTCGTGGTGCCCTCAGACTCAGAAGC	17	-	53569281-53569330	17q11	Rattus norvegicus amphiphysin (Amph), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IMP]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence ISS]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62648864-S	ILMN_267526	ACY1L2_PREDICTED	XM_001064002.1	XM_001064002.1		313130	109476296	XM_001064002.1	Acy1l2_predicted	XP_001064002.1	ILMN_1356392	0000060441	S	1081	ATCGGGACTGATGCCTTGAACCACACGGAAGAGTACACAGAAGCCGCAGG				5q21	PREDICTED: Rattus norvegicus aminoacylase 1-like 2 (predicted) (Acy1l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651074	ILMN_294971	FAM164C	NM_001014079.1	NM_001014079.1		314321	62078890	NM_001014079.1	Fam164c	NP_001014101.1	ILMN_1650965	0002030037	S	1453	GCACGAGTCTTTTATCCGTACCCTCCGGCATGCACGACAAGTCCAGCAGG	6	+	109343208-109343257	6q31	Rattus norvegicus family with sequence similarity 164, member C (Fam164c), mRNA.					
Rattus norvegicus	RefSeq	GI_58531216-A	ILMN_287912	RXRB	NM_206849.2	NM_206849.2		361801	77404366	NM_206849.2	Rxrb	NP_996731.2	ILMN_1376944	0001190497	S	1662	CCAGGGGTCTGGCAACACTTAACAGGGTTTGCGTGGTCCCCAAGTCAGAG	20	-	4955105-4955154	20p12	Rattus norvegicus retinoid X receptor beta (Rxrb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA];  [goid 4886] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA];  [goid 30375] [evidence IDA]; Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence IDA]; Interacting selectively with the retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily [goid 42974] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RXR-beta	RXR-beta
Rattus norvegicus	RefSeq	GI_62665691-I	ILMN_287912	RXRB	NM_206849.2	NM_206849.2		361801	77404366	NM_206849.2	Rxrb	NP_996731.2	ILMN_1375706	0003870333	S	2382	GAGATGGGTGCTGGGCTGCATGGTTTTTGCCCTGGATCTCTTTTGGGGGG	20	-	4954385-4954434	20p12	Rattus norvegicus retinoid X receptor beta (Rxrb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA];  [goid 4886] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA];  [goid 30375] [evidence IDA]; Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence IDA]; Interacting selectively with the retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily [goid 42974] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RXR-beta	RXR-beta
Rattus norvegicus	RefSeq	GI_62663013-S	ILMN_65362	LOC290908	XM_225046.3	XM_225046.3		290908	62663013	XM_225046.3	LOC290908	XP_225046.3	ILMN_1368650	0006220161	S	342	CGCTCTGATGTGTGGCTTTTCCAGCTTGGTGTCCGCATCCGCAATGGAGG				16q12.5	PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (LOC290908), mRNA.					
Rattus norvegicus	RefSeq	GI_62647655-S	ILMN_276900	MRPL19	NM_001029898.1	NM_001029898.1		297372	71361648	NM_001029898.1	Mrpl19	NP_001025069.1	ILMN_1373380	0004670465	S	947	CTGGAGCCGAGGGTGGAAGGAGAATACTGACTCCTAAAGTTGCCCTCTGG	4	-	116207714-116207763	4q34	Rattus norvegicus mitochondrial ribosomal protein L19 (Mrpl19), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]			Rpml15; MRP-L15	Rpml15; MRP-L15
Rattus norvegicus	RefSeq	GI_19424245-S	ILMN_273967	PIB5PA	NM_133562.1	NM_133562.1		171088	19424245	NM_133562.1	Pib5pa	NP_598246.1	ILMN_1349574	0006130181	S	3199	TGGCACCACCTCAACTGTGACAATCAGCAAAGCCTCGCCTGGGCCCTCAT	14	-	84125874-84125923	14q21	Rattus norvegicus phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A (Pib5pa), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IDA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IDA]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Inpp; Pipp	Inpp; Pipp
Rattus norvegicus	RefSeq	GI_62651080-S	ILMN_68987	RGD1310769_PREDICTED	XM_216756.4	XM_216756.4		299207	109478528	XM_216756.4	RGD1310769_predicted	XP_216756.3	ILMN_1359799	0000430592	S	1271	CTGCCCAGAGCAGCTGCAAGCAAGGGCTGCTTCATGGGGCTAAGCACATA	6	-	109934993-109935042	6q31	PREDICTED: Rattus norvegicus similar to HSPC288 (predicted) (RGD1310769_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113814-S	ILMN_276601	V1RA8	NM_001008948.1	NM_001008948.1		494294	57113814	NM_001008948.1	V1ra8	NP_001008948.1	ILMN_1355031	0006510136	S	788	TCCAGGGAAACCCATCTCTCTATTGTGCCCAGATTCTTGTAGCTCATAGC	4	+	124057073-124057122	4q34	Rattus norvegicus vomeronasal 1 receptor, A8 (V1ra8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645984-S	ILMN_285525	INSM1_PREDICTED	XM_001055419.1	XM_001055419.1		366210	109470953	XM_001055419.1	Insm1_predicted	XP_001055419.1	ILMN_1359438	0000870162	S	1537	CTCTACGAGTGCCACCACTGCGCCAAGAAGTTCCGTCGTCAGGCCTATCT				3q41	PREDICTED: Rattus norvegicus insulinoma-associated 1 (predicted) (Insm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667272-S	ILMN_53429	LOC501623	XM_580220.1	XM_580220.1		501623	62667272	XM_580220.1	LOC501623	XP_580220.1	ILMN_1360219	0004120725	S	832	TGAGCACAGCTGAAGAATAATTGGGGCAGGGCTGACAACATGTGGAAGAC					PREDICTED: Rattus norvegicus LOC501623 (LOC501623), mRNA.					
Rattus norvegicus	RefSeq	GI_62660119-S	ILMN_48569	MLLT2_PREDICTED	XM_223161.3	XM_223161.3		305152	62660119	XM_223161.3	Mllt2_predicted	XP_223161.3	ILMN_1355116	0004670193	S	6278	CCTAATGACCCAACACGACCCCCCAACAAACCCACGGTAGAGGTGACTAG				14p22	PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2 (predicted) (Mllt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652359-S	ILMN_65334	OXR1	XM_576258.2	XM_576258.2		117520	109480687	XM_576258.2	Oxr1	XP_576258.2	ILMN_1350714	0002680433	S	3309	GGCCTGGGTTCCAGTAGTTTAACAGCCAGGTGGGATCTGTCAGCCCAGTG	7	+	77500809-77500858	7q31	PREDICTED: Rattus norvegicus oxidation resistance 1 (Oxr1), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a cell wall [goid 16998] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a cell wall [goid 16998] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62648985	ILMN_294964	RGD1307218	NM_001014190.1	NM_001014190.1		362518	62079106	NM_001014190.1	RGD1307218	NP_001014212.1	ILMN_1650261	0000540411	S	1342	CAATGTTGCTAGGTGTAAAGGCTCTGGGACAGTGGAGGAATGCACCCGAG	5	-	66327656-66327705	5q22	Rattus norvegicus similar to RIKEN cDNA 2810432L12 (RGD1307218), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109354	MGC109354
Rattus norvegicus	RefSeq	GI_62658213-I	ILMN_276519	RGD1559843_PREDICTED	XM_001073905.1	XM_001073905.1		500729	109480010	XM_001073905.1	RGD1559843_predicted	XP_001073905.1	ILMN_1375687	0003360750	S	391	GCCTTCAGGGTGCATGGAAGGCCTGTGTTTGGGGCTGTTCGCACTATTGC				6q32	PREDICTED: Rattus norvegicus RGD1559843 (predicted) (RGD1559843_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651322-S	ILMN_276519	RGD1559843_PREDICTED	XM_001073905.1	XM_001073905.1		500729	109480010	XM_001073905.1	RGD1559843_predicted	XP_001073905.1	ILMN_1357523	0006180333	S	2249	TGCCTCCTGATCCTGCCGAGAGTGGAAGCACCCCAGCTACAGAAGCACCT				6q32	PREDICTED: Rattus norvegicus RGD1559843 (predicted) (RGD1559843_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036649-S	ILMN_290086	MCL1	NM_021846.2	NM_021846.2		60430	51036649	NM_021846.2	Mcl1	NP_068618.2	ILMN_1357312	0000060347	S	1502	GCTAGAAGCTGCAGTGCTGTACAAGAGGGTGAAGGAGGATGTGCTCTGAG	2|NW_047645.1	-	136231-136280		Rattus norvegicus myeloid cell leukemia sequence 1 (Mcl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62643413-S	ILMN_292131	RGD1560995_PREDICTED	XM_227116.3	XM_227116.3		310390	62643413	XM_227116.3	RGD1560995_predicted	XP_227116.3	ILMN_1362715	0001580427	S	2678	CCGGTCATTGTATTTCAATGTTCTCTTCTACCTCCCACAAACCATAGCGG	2	+	138086388-138086437	2q26	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (predicted) (RGD1560995_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655183-S	ILMN_286852	RGD1563521_PREDICTED	XR_007378.1	XR_007378.1		501161	109487283	XR_007378.1	RGD1563521_predicted		ILMN_1361681	0003170471	S	751	CGCTTGAAGAAGGAAAAGAAGCGACTGGCTGCACTGGCCCTGACCTTTTC				9q33	PREDICTED: Rattus norvegicus similar to Nol5a_predicted protein (predicted) (RGD1563521_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656030-S	ILMN_67690	LOC497896	XM_573081.1	XM_573081.1		497896	62656030	XM_573081.1	LOC497896	XP_573081.1	ILMN_1358096	0007050100	S	1945	CATGCGGGAAAGCGTTCAGTCAAAGCTCATCTCTTGCCAACCACCAGAAG				10q22	PREDICTED: Rattus norvegicus similar to hypothetical protein 9630041N07 (LOC497896), mRNA.					
Rattus norvegicus	RefSeq	GI_62667144-S	ILMN_68934	LOC302327	XM_228451.3	XM_228451.3		302327	62667144	XM_228451.3	LOC302327	XP_228451.3	ILMN_1355716	0002190338	S	4123	GCATCCCTTAACAACGCTTTGTGTTAGCATGCTGCAAATCAAAATGGCGC				Xq32	PREDICTED: Rattus norvegicus similar to ZNF6 protein (LOC302327), mRNA.					
Rattus norvegicus	RefSeq	GI_62642049	ILMN_264256	PIP5K1B	NM_001012743.1	NM_001012743.1		309419	60678263	NM_001012743.1	Pip5k1b	NP_001012761.1	ILMN_1650947	0000770072	S	2313	ATGGCCCGTCAGCAGATGGATGTGAAAAGCCCACACCGTTCTGTGGGTGC	1	-	227690258-227690307	1q51	Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type I, beta (Pip5k1b), mRNA.	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence ISS]; The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16308] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16308] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105713; Pip5k1a	MGC105713; Pip5k1a
Rattus norvegicus	RefSeq	GI_62648082-S	ILMN_296854	RGD1561270_PREDICTED	XM_001057394.1	XM_001057394.1		500304	109474111	XM_001057394.1	RGD1561270_predicted	XP_001057394.1	ILMN_1355485	0006840195	S	2596	CCACCAGCGTCTTTATAGGTTGATAGGACTGTGTGTTTCTGGACATGTCT					PREDICTED: Rattus norvegicus similar to Zinc finger protein 248 (predicted) (RGD1561270_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666113	ILMN_58877	RGD1565550_PREDICTED	XM_574776.2	XM_574776.2		499453	109509570	XM_574776.2	RGD1565550_predicted	XP_574776.1	ILMN_1649730	0002360519	S	1062	GACGCTCTCCCTAGGCCCTGTACATCTGAAAGGTGCAGTTCAGCAAATGC	20	+	38403256-38403305	20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1565550_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666250	ILMN_58877	RGD1565550_PREDICTED	XM_574776.2	XM_574776.2		499453	109509570	XM_574776.2	RGD1565550_predicted	XP_574776.1	ILMN_1650570	0001690280	S	1	ATGGAAGCTGGAAGCAATGTGGATAGCAGCTGTGTGCTGCGGGAATCCCG	20	+	38402195-38402244	20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1565550_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655570-S	ILMN_56959	LOC501207	XR_000311.1	XR_000311.1		501207	62655570	XR_000311.1	LOC501207		ILMN_1372570	0002970605	S	2266	GTTGCCACAGGGCCTCACTCTATCATCAGTGGGTACAAGCAGGTCCTGAT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810022L02 (LOC501207), mRNA.					
Rattus norvegicus	RefSeq	GI_62656862-S	ILMN_50814	LOC287637	XM_220885.3	XM_220885.3		287637	62656862	XM_220885.3	LOC287637	XP_220885.2	ILMN_1358969	0002940438	S	1412	GGATAGGGACTGCCCTTCTGACCCTGATTTACCTCCTGGACTGACCTGGG				10q31	PREDICTED: Rattus norvegicus similar to cDNA sequence BC034054 (predicted) (LOC287637), mRNA.					
Rattus norvegicus	RefSeq	GI_47577020-S	ILMN_275538	OLR781	NM_001000375.1	NM_001000375.1		296035	47577020	NM_001000375.1	Olr781	NP_001000375.1	ILMN_1354691	0006510242	S	401	CCATCATGAGCCCACGGATGTGCATCTTGTTTTCAGTGGCCTCCTGGTTG	3	-	97533728-97533777	3q34	Rattus norvegicus olfactory receptor 781 (Olr781), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr781	Olr781
Rattus norvegicus	RefSeq	GI_6981187-S	ILMN_59501	MBL1	NM_012599.2	NM_012599.2		24548	61098192	NM_012599.2	Mbl1	NP_036731.2	ILMN_2039269	0003370767	S	282	AGGAGCCCCTGGAAGTCAAGGACCAAAAGGCCAAAAAGGGGATCGTGGAG	16	+	17594359-17594408	16p14	Rattus norvegicus mannose binding lectin (A) (Mbl1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]	Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 1867] [evidence IDA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IDA]; Interacting selectively with any polysaccharide [goid 30247] [evidence IDA]	Mlb1; Mbpa	Mlb1; Mbpa
Rattus norvegicus	RefSeq	GI_62665022-S	ILMN_283359	ZSWIM4_PREDICTED	XM_001067858.1	XM_001067858.1		304655	109508553	XM_001067858.1	Zswim4_predicted	XP_001067858.1	ILMN_1353595	0006420008	S	4431	TGAACACAGCTTCTAGAGTGGGACAGGAGGGGCTTCCAGTAGTATCACGG				19q11	PREDICTED: Rattus norvegicus zinc finger, SWIM domain containing 4 (predicted) (Zswim4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662669-S	ILMN_51475	SNX25	XM_224863.4	XM_224863.4		306471	109503353	XM_224863.4	Snx25	XP_224863.4	ILMN_1353074	0001850593	S	3312	CACTGAGGATTCTGACCATTCCTGTGTCTCCCGTGTATTGAAGACCACTG	16	+	49518487-49518536	16q11	PREDICTED: Rattus norvegicus sorting nexin 25 (Snx25), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667612-S	ILMN_49232	LOC367975	XM_346380.2	XM_346380.2		367975	62667612	XM_346380.2	LOC367975	XP_346381.2	ILMN_1361309	0001570128	S	79	GCTCTGGTGAAGGACACCCCCACACATCTCCCTTTTTAATCATTGCAGCC					PREDICTED: Rattus norvegicus similar to B-cell translocation gene 1 (LOC367975), mRNA.					
Rattus norvegicus	RefSeq	GI_6978496-S	ILMN_296812	AMBP	NM_012901.1	NM_012901.1		25377	6978496	NM_012901.1	Ambp	NP_037033.1	ILMN_1370481	0000050368	S	1015	GCAAGGAGTACTGTGGAGTCCCTGGTGATGGGTACGAGGAGCTAACACGC	5	-	80119821-80119824:80119825-80119850:80120564-80120583	5q24	Rattus norvegicus alpha-1-microglobulin/bikunin precursor (Ambp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with an immunoglobulin of an IgA isotype [goid 19862] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646796-S	ILMN_58924	CDK6	XM_342638.3	XM_342638.3		114483	109471703	XM_342638.3	Cdk6	XP_342639.2	ILMN_1374074	0005900358	S	1721	TCTAACCTTGAATGCTGCCAGTGTAGAATGGGGATCCAGGCCCAGCGGAG	4	-	27362846-27362895	4q13	PREDICTED: Rattus norvegicus cyclin-dependent kinase 6 (Cdk6), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence ISS]; Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence IEA]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence ISS]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence IEA]; The process whereby a specialized cell loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors [goid 43697] [evidence ISS]; The process whereby a specialized cell loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors [goid 43697] [evidence IEA]; Any process that modulates the frequency, rate or extent of erythrocyte differentiation [goid 45646] [evidence ISS]; Any process that modulates the frequency, rate or extent of erythrocyte differentiation [goid 45646] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence ISS]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577058-S	ILMN_275544	OLR302	NM_001000238.1	NM_001000238.1		293600	47577058	NM_001000238.1	Olr302	NP_001000238.1	ILMN_1358601	0005220193	S	282	CAAGGGATGTATGGCCCAACTCTTCTTCCTTGTGTGGTCTGCATCGTCTG	1	+	200459091-200459140	1q41	Rattus norvegicus olfactory receptor 302 (Olr302), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr302; ratchr1-200608802-200609734_ORF	Olr302; ratchr1-200608802-200609734_ORF
Rattus norvegicus	RefSeq	GI_62658015-S	ILMN_280457	RGD1311861_PREDICTED	XM_001073139.1	XM_001073139.1		288042	109494528	XM_001073139.1	RGD1311861_predicted	XP_001073139.1	ILMN_1366132	0004560400	S	519	AGCCTTTGAGCGTGGGTATGAGTTCCTGGGGGTTGCCTTCCGAGGACTTC				11q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC19444 (predicted) (RGD1311861_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656510-S	ILMN_53493	CTNS_PREDICTED	XM_220649.4	XM_220649.4		287478	109488503	XM_220649.4	Ctns_predicted	XP_220649.4	ILMN_1354257	0001230017	S	900	GAGCATTGGTGGTGTGCTCCTGGATTTTACAGGGGGCAGCTTTAGCCTCC	10	-	60061409-60061458	10q24	PREDICTED: Rattus norvegicus cystinosis, nephropathic (predicted) (Ctns_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654387-S	ILMN_302213	LRRFIP2	NM_001024761.1	NM_001024761.1		301035	67078495	NM_001024761.1	Lrrfip2	NP_001019932.1	ILMN_1354141	0000630438	S	1589	CCACCTGGCAAAGCGGCTAGAGAAGATGAAGGCCAACAGGACAGCCCTTC	8	+	115612329-115612378	8q32	Rattus norvegicus leucine rich repeat (in FLII) interacting protein 2 (Lrrfip2), mRNA.		The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_41529836-S	ILMN_288011	JUP	NM_031047.2	NM_031047.2		81679	41529836	NM_031047.2	Jup	NP_112309.2	ILMN_1359114	0001170427	S	3081	GTAGCGGGAGAGAGTGGAGACTTTTTAAGTGCCCCTGCTAGGACCTGCCC	10	-	89308246-89308295	10q32.1	Rattus norvegicus junction plakoglobin (Jup), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence IDA]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IDA]; The apical end of the lateral plasma membrane of epithelial cells [goid 16327] [evidence IDA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IDA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence ISS]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62643608-S	ILMN_55830	KCNMB3_PREDICTED	XM_227040.3	XM_227040.3		310303	62643608	XM_227040.3	Kcnmb3_predicted	XP_227040.3	ILMN_1353538	0003990138	S	1160	AGCCCCAGGTGTGTTTCATCGTCACAGAGGCTTTCCCCGAAGACAGAGGC				2q25	PREDICTED: Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M beta member 3 (predicted) (Kcnmb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577718-S	ILMN_273781	OLR586	NM_001000660.1	NM_001000660.1		404860	47577718	NM_001000660.1	Olr586	NP_001000660.1	ILMN_1366446	0006110500	S	354	GGCTTTTGATCGGTACAAGGCCATCAGCAATCCCCTGATATATGCTGTAG	3	+	71532474-71532523	3q24	Rattus norvegicus olfactory receptor 586 (Olr586), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr586	Olr586
Rattus norvegicus	RefSeq	GI_47578078-S	ILMN_268940	OLR596	NM_001001056.1	NM_001001056.1		405944	47578078	NM_001001056.1	Olr596	NP_001001056.1	ILMN_1367437	0000360315	S	872	GCCTGAGGAACAAGGATGTGAAGGAGGCCCTGAAAAAACTGAAAATGAAA	3	+	71665077-71665126	3q24	Rattus norvegicus olfactory receptor 596 (Olr596), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr596	Olr596
Rattus norvegicus	RefSeq	GI_62644231-S	ILMN_65672	SLC30A7	XM_227612.4	XM_227612.4		310801	109465417	XM_227612.4	Slc30a7	XP_227612.3	ILMN_1369680	0000380170	S	1208	CCTTGAAGCTTGTAGTAGCCCCTGATGCAGACGCCAGGTGGATCTTGAGC	2	-	212096204-212096253	2q41	PREDICTED: Rattus norvegicus solute carrier family 30 (zinc transporter), member 7 (Slc30a7), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence ISS]	Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence IEA]; Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718676-S	ILMN_52966	LOC503390	XM_578928.1	XM_578928.1		503390	62718676	XM_578928.1	LOC503390	XP_578928.1	ILMN_1349784	0002850348	S	876	GTATCCTTTAGTTTCCCGCTGACCGCACCAGCCGGGGCTGGTCTCAGGTA					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503390), mRNA.					
Rattus norvegicus	RefSeq	GI_21245095-S	ILMN_272380	MCFD2	NM_139253.1	NM_139253.1		246117	21245095	NM_139253.1	Mcfd2	NP_640346.1	ILMN_1369244	0006550692	S	1417	GGAAGAGCAGTAGTAGCTGAAAGAGAAACAGCCATAGGTCGTACTTTGCG	6	-	10763791-10763840	6q12	Rattus norvegicus multiple coagulation factor deficiency 2 (Mcfd2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IDA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Sdnsf	Sdnsf
Rattus norvegicus	RefSeq	GI_6978430-S	ILMN_300820	ACADL	NM_012819.1	NM_012819.1		25287	6978430	NM_012819.1	Acadl	NP_036951.1	ILMN_1355733	0003450056	S	1194	CCCGATTGCAAAAGCCTACGTGGATGCTCGAGTTCAGCCGATCTACGGTG	9	-	65613338-65613376:65618657-65618667	9q32	Rattus norvegicus acyl-Coenzyme A dehydrogenase, long-chain (Acadl), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: acyl-CoA + ETF = 2,3-dehydroacyl-CoA + reduced ETF [goid 4466] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	ACOADA; LCAD	ACOADA; LCAD
Rattus norvegicus	RefSeq	GI_62666099-S	ILMN_58255	LOC499447	XM_574770.1	XM_574770.1		499447	62666099	XM_574770.1	LOC499447	XP_574770.1	ILMN_1354075	0004050672	S	469	CGGGAGGTCTCAGTGGCAAGGATGAGACAGCACGGGACAACCTGTTATTG					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC499447), mRNA.					
Rattus norvegicus	RefSeq	GI_62664019-S	ILMN_51668	CETN1	XM_344646.3	XM_344646.3		84592	109506287	XM_344646.3	Cetn1	XP_344647.1	ILMN_1352601	0002850707	S	449	CAACGAGTTGGGGGAAAGCCTCACAGACGAGGAGCTGCAGGAAATGATCG	18	-	914108-914157	18p13	PREDICTED: Rattus norvegicus centrin 1 (Cetn1), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence IDA]; A 9+0 cilium that forms the portion of the axoneme traversing the boundary between the photoreceptor inner and outer segments [goid 32391] [evidence ISS]	Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a complex of G-protein beta/gamma subunits [goid 31683] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_12018319-S	ILMN_271918	BBOX1	NM_022629.1	NM_022629.1		64564	12018319	NM_022629.1	Bbox1	NP_072151.1	ILMN_1353895	0005420136	S	1042	GGACGTCGCAGCTATGAAGCAGGAACTGAGATATCCCGCCATCTGGAAGG	3	-	95747807-95747856	3q33	Rattus norvegicus butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 (Bbox1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence TAS]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence ISS]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: 4-trimethylammoniobutanoate + 2-oxoglutarate + O2 = 3-hydroxy-4-trimethylammoniobutanoate + succinate + CO2 [goid 8336] [evidence TAS]; Catalysis of the reaction: 4-trimethylammoniobutanoate + 2-oxoglutarate + O2 = 3-hydroxy-4-trimethylammoniobutanoate + succinate + CO2 [goid 8336] [evidence ISS]; Catalysis of the reaction: 4-trimethylammoniobutanoate + 2-oxoglutarate + O2 = 3-hydroxy-4-trimethylammoniobutanoate + succinate + CO2 [goid 8336] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]	Bbh; Bbox	Bbh; Bbox
Rattus norvegicus	RefSeq	GI_62718654-S	ILMN_51813	LOC302210	XM_217546.3	XM_217546.3		302210	62718654	XM_217546.3	LOC302210	XP_217546.3	ILMN_1357758	0004810047	S	861	GGTCGTACTTTCACCTCGCCTCTCTGCAGCAAGTGTGTACTTTTGGAGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC302210), mRNA.					
Rattus norvegicus	RefSeq	GI_62638578-S	ILMN_56549	LOC499029	XM_579903.1	XM_579903.1		499029	62638578	XM_579903.1	LOC499029	XP_579903.1	ILMN_1369314	0002760348	S	220	GTGGTAATGGCTCCCAAGCAAAGAATCTGAACCTTACAGCAGCCCCACCT					PREDICTED: Rattus norvegicus LOC499029 (LOC499029), mRNA.					
Rattus norvegicus	RefSeq	GI_62662543-S	ILMN_281276	MARCH1_PREDICTED	XM_001071042.1	XM_001071042.1		361135	109504041	XM_001071042.1	March1_predicted	XP_001071042.1	ILMN_1370328	0001230333	S	746	CGTGTAATGTGAACACGGAAGGCAAGGATGCTGTGGTTGTGCCTGTGCCA				16p14-p13	PREDICTED: Rattus norvegicus membrane-associated ring finger (C3HC4) 1 (predicted) (March1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657224-S	ILMN_49864	TEX2	XM_221043.4	XM_221043.4		303611	109489187	XM_221043.4	Tex2	XP_221043.4	ILMN_1369672	0005900647	S	3203	CTGCTAACTGTGGAAGTGCAGGAGTGTCGCGGGACCTTGGCGGTCAACAT	10	+	95993147-95993196	10q32.1	PREDICTED: Rattus norvegicus testis expressed gene 2 (Tex2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.37544	ILMN_160560	RN.37544	Rn.37544		Rn.37544		3018630	AA891751			ILMN_1530219	0005130736	S	509	AATTGAAGAAATATTCTCCTTTTCCAAGTGGCATAACATACAAAATGTAG					EST195554 Normalized rat kidney, Bento Soares Rattus sp. cDNA clone RKIAG34 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_13928821-S	ILMN_289263	KCNJ10	NM_031602.1	NM_031602.1		29718	13928821	NM_031602.1	Kcnj10	NP_113790.1	ILMN_1357099	0000840577	S	1033	GAGATCCTCTGGGGCTACGAGTTCACACCTGCTATCTCACTGTCAGCCAG	13	+	88370201-88370250	13q24	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 10 (Kcnj10), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663756-S	ILMN_66906	IDI2_PREDICTED	XM_225508.3	XM_225508.3		291275	62663756	XM_225508.3	Idi2_predicted	XP_225508.2	ILMN_1363470	0001780403	S	681	TGAGGAACCGGAAATAAGACACTGGCTGTGAGGATGCCCCAGTTCAGCAC					PREDICTED: Rattus norvegicus isopentenyl-diphosphate delta isomerase 2 (predicted) (Idi2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981497-S	ILMN_283542	S100B	NM_013191.1	NM_013191.1		25742	6981497	NM_013191.1	S100b	NP_037323.1	ILMN_1373043	0000780348	S	1136	GGACACGGACAGAGGAGGGCACTGGAGAGAGTGTCAGGTCTTTTTCTAGC	20	-	12791738-12791787	20p12	Rattus norvegicus S100 calcium binding protein B (S100b), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence ISS]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence IEA]; Interacting selectively with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48156] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]	MGC93559; S100P	MGC93559; S100P
Rattus norvegicus	RefSeq	GI_47576066-S	ILMN_283954	OLR1418	NM_001000008.1	NM_001000008.1		287313	47576066	NM_001000008.1	Olr1418	NP_001000008.1	ILMN_1354505	0006590463	S	500	GTGGGTCACGGGAGATCTATCACTTCTACTGTGAGGTTCTGGCTGTGACA	10	-	44254306-44254355	10q22	Rattus norvegicus olfactory receptor 1418 (Olr1418), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-44268478-44267534_ORF; Olr1418	ratchr10-44268478-44267534_ORF; Olr1418
Rattus norvegicus	RefSeq	GI_62718770-S	ILMN_60522	LOC501470	XM_576880.1	XM_576880.1		501470	62718770	XM_576880.1	LOC501470	XP_576880.1	ILMN_1370234	0001240050	S	640	GAACATCTGTGACCCCAGTGCCACGCAACAGCAGGTAGGGTTAGGCCTCA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501470), mRNA.					
Rattus norvegicus	RefSeq	GI_62640897-S	ILMN_277603	RGD1308371_PREDICTED	XM_001062219.1	XM_001062219.1		293114	109462408	XM_001062219.1	RGD1308371_predicted	XP_001062219.1	ILMN_1363646	0004810100	S	448	CACTGATCGGCGTAGCCTGTGGGGTCTCCTATCCCAGTGCTTTGGCTTTT				1q32	PREDICTED: Rattus norvegicus hypothetical LOC293114 (predicted) (RGD1308371_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394170-S	ILMN_290310	RCN2	NM_017132.1	NM_017132.1		29218	8394170	NM_017132.1	Rcn2	NP_058828.1	ILMN_1362290	0002260138	S	1506	GTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTCGTAGACTTCC	8	+	59659374-59659423	8q24	Rattus norvegicus reticulocalbin 2, EF-hand calcium binding domain (Rcn2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656493-S	ILMN_52552	MED31_PREDICTED	XM_213393.4	XM_213393.4		287475	109488487	XM_213393.4	Med31_predicted	XP_213393.2	ILMN_1374051	0005700286	S	971	GCAGCAGCAGAATACCACAGCAGGAAAATGAAGAGCTGGCAACAGCAGGC	10	-	59104388-59104407:59104408-59104437	10q24	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 31 homolog (yeast) (predicted) (Med31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24025620-S	ILMN_302599	SLC17A3	NM_153622.1	NM_153622.1		266730	24025620	NM_153622.1	Slc17a3	NP_705886.1	ILMN_1373230	0002510347	S	2119	GCATGGCAAAGGCCAAGCTATGAGCAACAAGGGTGGGGTTCAGTCCTGAG				17p11	Rattus norvegicus solute carrier family 17 (sodium phosphate), member 3 (Slc17a3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in) [goid 5436] [evidence TAS]	Rnpt4	Rnpt4
Rattus norvegicus	RefSeq	GI_62662269-S	ILMN_262728	RGD1564668_PREDICTED	XM_001065544.1	XM_001065544.1		498594	109503853	XM_001065544.1	RGD1564668_predicted	XP_001065544.1	ILMN_1359828	0004670129	S	1346	CAGGGCCAGTGTGTGGTCTTTGTGACAGGCAAAGGCAGTGGTGAGCTGGA				16p14	PREDICTED: Rattus norvegicus similar to leucine rich repeat containing 22 (predicted) (RGD1564668_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657754-S	ILMN_69274	RGD1565472_PREDICTED	XM_573266.2	XM_573266.2		498067	109493015	XM_573266.2	RGD1565472_predicted	XP_573266.1	ILMN_1366083	0006130484	S	2260	TCTTCAGACCCCTCTTTGAGGCAAGAAAGGTTGCCAGGTGATGCCTGAGC	11	+	38545367-38545416	11q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310003P10 (predicted) (RGD1565472_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660188-S	ILMN_53155	MRPL1_PREDICTED	XM_214008.4	XM_214008.4		289491	109499499	XM_214008.4	Mrpl1_predicted	XP_214008.2	ILMN_1363224	0002850324	S	923	AGACTGACTCGCTCTTACCCAAGAAGCTGGAAACGCAGAAGCTGCCTAGA	14	-	14813637-14813686	14p22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L1 (predicted) (Mrpl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645405-S	ILMN_263604	RGD1560612_PREDICTED	XM_001070000.1	XM_001070000.1		362166	109470258	XM_001070000.1	RGD1560612_predicted	XP_001070000.1	ILMN_1365969	0004150278	S	2814	TTCCTTTCTGTTTTGTTGGGTGGGGAGCAGGGACGGGCAGAGGGAGGAGA				3q24	PREDICTED: Rattus norvegicus similar to PHF21A protein (predicted) (RGD1560612_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639111-S	ILMN_271816	APOC2_PREDICTED	XM_001076000.1	XM_001076000.1		292697	109461384	XM_001076000.1	Apoc2_predicted	XP_001076000.1	ILMN_1357481	0000940601	S	184	GGCCGCCGGAGAACTATACCAGAAGACATACCTGACCAGCGTGGACGAGA				1q21	PREDICTED: Rattus norvegicus apolipoprotein C-II (predicted) (Apoc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717904-S	ILMN_54708	LOC501251	XM_576670.1	XM_576670.1		501251	62717904	XM_576670.1	LOC501251	XP_576670.1	ILMN_1365966	0006020215	S	934	CCTGGGGCAGCTGGAAGCTCCTGAGGCTAAGGCCACAGTTTGGTCACGCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501251), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56676353-S	ILMN_299382	NDN	NM_001008558.1	NM_001008558.1		308690	56676353	NM_001008558.1	Ndn	NP_001008558.1	ILMN_1358752	0005910725	S	1363	GGGACTGATGGTCCGTATCGACAAAGAAGGCCCTGGAGAGTTAGCAGGAC	1	+	116595965-116596014	1q22	Rattus norvegicus necdin homolog (mouse) (Ndn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence IEA]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence IEA]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IEA]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence NAS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; Long distance growth of a single axon process involved in cellular development [goid 48676] [evidence IEA]; Long distance growth of a single axon process involved in cellular development [goid 48676] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IPI]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence IEA]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence ISS]	MGC105768	MGC105768
Rattus norvegicus	RefSeq	GI_62648914-S	ILMN_271865	LOC683694	XM_001065009.1	XM_001065009.1		683694	109476347	XM_001065009.1	LOC683694	XP_001065009.1	ILMN_1370903	0006400273	S	1005	GCCTAAGAGGGGAGCCAATGCCCAGTGAACTCAAGCTGTAGCCAGATGGG					PREDICTED: Rattus norvegicus similar to glyoxylate reductase/hydroxypyruvate reductase (LOC683694), mRNA.					
Rattus norvegicus	RefSeq	GI_56090240-S	ILMN_285558	THTPA	NM_001007682.1	NM_001007682.1		305889	56090240	NM_001007682.1	Thtpa	NP_001007683.1	ILMN_1351670	0002680026	S	2135	GGGGGCTGGTTAGGCCTAGACTGGTTTCGGGTGCAAGCACAGTAAGGTAA	15	+	33204691-33204740	15p13	Rattus norvegicus thiamine triphosphatase (Thtpa), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver [goid 6772] [evidence IEA]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence ISS]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IEA]	Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: thiamin triphosphate + H2O = thiamin diphosphate + phosphate [goid 50333] [evidence ISS]	MGC94155	MGC94155
Rattus norvegicus	RefSeq	GI_62653888	ILMN_279954	RGD1561996_PREDICTED	XR_007349.1	XR_007349.1		300821	109484941	XR_007349.1	RGD1561996_predicted		ILMN_1650860	0002350722	S	241	CCTGTGACCCAAGAAAACCAGAGCCATGCCGGCTCATGAAGAGAAGCTGG				8q24	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (predicted) (RGD1561996_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656623-S	ILMN_283653	ABR_PREDICTED	XM_001080643.1	XM_001080643.1		287537	109491345	XM_001080643.1	Abr_predicted	XP_001080643.1	ILMN_1355402	0006840736	S	5242	GGAATCCGGGTATGCCTGTACTTGCTTGTGCAACGACTGAGGGCTGCCAG				10q26	PREDICTED: Rattus norvegicus active BCR-related gene (predicted) (Abr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577974	ILMN_286207	OLR1106	NM_001000423.1	NM_001000423.1		300199	47577974	NM_001000423.1	Olr1106	NP_001000423.1	ILMN_1650287	0001190112	S	740	GCTTCTTCTACGGCTCAGGGTTACTCCGTTACCTCATGCCAAATTCCGGG	7	-	137109360-137109409	7q36	Rattus norvegicus olfactory receptor 1106 (Olr1106), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1106; ratchr7-137186586-137185657_ORF	Olr1106; ratchr7-137186586-137185657_ORF
Rattus norvegicus	RefSeq	GI_62648253-S	ILMN_278789	LRP6_PREDICTED	XM_001071349.1	XM_001071349.1		312781	109474380	XM_001071349.1	Lrp6_predicted	XP_001071349.1	ILMN_1349678	0000050184	S	5450	CTTGGAAGGAGCCAAATTGCCTTCAGGGTAGCTAACATTTGAGGGCCCCG				4q43	PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 6 (predicted) (Lrp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078710-S	ILMN_294355	TMEM175	NM_001013991.1	NM_001013991.1		305623	62078710	NM_001013991.1	Tmem175	NP_001014013.1	ILMN_1374099	0000780020	S	1378	GGAACATGCTTTCATGTTTGCCAAGCTCGCACTGTACCCCTGTGCCAGCC	14	-	1614912-1614961	14p22	Rattus norvegicus transmembrane protein 175 (Tmem175), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62665878-S	ILMN_70327	LOC361828	XM_342122.2	XM_342122.2		361828	62665878	XM_342122.2	LOC361828	XP_342123.2	ILMN_1351400	0004230176	S	5773	CAGCCCTGGCATGTGAGAGACCCTGTCCCCTAAGAAGGTGATACTTGGAG				20p12	PREDICTED: Rattus norvegicus similar to mKIAA0376 protein (predicted) (LOC361828), mRNA.					
Rattus norvegicus	RefSeq	GI_62664092-S	ILMN_269160	DSG2_PREDICTED	XM_001054396.1	XM_001054396.1		307562	109506991	XM_001054396.1	Dsg2_predicted	XP_001054396.1	ILMN_1369499	0006550673	S	1299	CATGCGGATCAAAGTGACCGACGCGGATGAAGTGGGCTCGGATAACTGGC				18p12	PREDICTED: Rattus norvegicus desmoglein 2 (predicted) (Dsg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664094-S	ILMN_269160	DSG2_PREDICTED	XM_001054396.1	XM_001054396.1		307562	109506991	XM_001054396.1	Dsg2_predicted	XP_001054396.1	ILMN_1358157	0006220717	S	3714	AGAGGAGTCTGGTCCTCCCAACTCTACTGTAACCACGTCTTCCACCAGGG				18p12	PREDICTED: Rattus norvegicus desmoglein 2 (predicted) (Dsg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638806-S	ILMN_67648	LOC361490	XM_341769.2	XM_341769.2		361490	62638806	XM_341769.2	LOC361490	XP_341770.2	ILMN_1366856	0006510019	S	1086	GACCTCAGGGCAGTCATCAGTCACCAGAACAGTGAAGGGAACCACAACCC					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32191 (LOC361490), mRNA.					
Rattus norvegicus	RefSeq	GI_62717819-S	ILMN_290820	PROS1	NM_031086.1	NM_031086.1		81750	71894706	NM_031086.1	Pros1	NP_112348.1	ILMN_1369010	0000940441	S	2009	AGCGGCTGCATGGAAGTGAACATCAACGGGGTACAGTTGGATCTGGATGA	Un|NW_047841.1	+	1268319-1268368		Rattus norvegicus protein S (alpha) (Pros1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of coagulation [goid 50819] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of coagulation [goid 50819] [evidence TAS]	Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62649477-S	ILMN_288915	UROD	XM_001067008.1	XM_001067008.1		29421	109476999	XM_001067008.1	Urod	XP_001067008.1	ILMN_1374563	0004850180	S	1075	GGGCATGGGCTTTACCCTGACATGGACCCAGAACACGTAGGAGCCTTTGT				5q36	PREDICTED: Rattus norvegicus uroporphyrinogen decarboxylase (Urod), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6779] [evidence IDA]; The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6779] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IC ]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence NAS]; The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 42168] [evidence ISS]; The chemical reactions and pathways involving uroporphyrinogen III, a precursor for synthesis of vitamin B12, chlorophyll, and heme in organisms that produce these compounds [goid 46502] [evidence IDA]	Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence IDA]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence IEA]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence NAS]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605689-S	ILMN_276006	SNRPA	NM_001008303.1	NM_001008303.1		292729	56605689	NM_001008303.1	Snrpa	NP_001008304.1	ILMN_1364755	0000940594	S	1072	CCCAGGGTCTTCCCAGACATTGCACCTGGCGCTGTTGGGTTGTGATTAAA	1	-	82265684-82265733	1q21	Rattus norvegicus small nuclear ribonucleoprotein polypeptide A (Snrpa), mRNA.	A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105915	MGC105915
Rattus norvegicus	RefSeq	GI_62654890-S	ILMN_57497	LOC367238	XM_346031.2	XM_346031.2		367238	62654890	XM_346031.2	LOC367238	XP_346032.2	ILMN_1370989	0004610152	S	53	CTCTACACAACGAGGAGGTGAGAGTCAAGGAGGTCAGCTAGTGTCAGCTT					PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P1 (LOC367238), mRNA.					
Rattus norvegicus	RefSeq	GI_27501443-S	ILMN_274038	NQO1	NM_017000.2	NM_017000.2		24314	27501443	NM_017000.2	Nqo1	NP_058696.2	ILMN_2039396	0000010411	S	1336	TGCAGTGACTGACAAGCCTCGGGGGATTGCTCTCCAGCTCTTCTCTGCCT	19	-	37251202-37251251	19q12	Rattus norvegicus NAD(P)H dehydrogenase, quinone 1 (Nqo1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)(+) + a hydroquinone [goid 3955] [evidence IDA]; Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)(+) + a hydroquinone [goid 3955] [evidence ISS]; Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)(+) + a hydroquinone [goid 3955] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]	Dia4; MGC93075	Dia4; MGC93075
Rattus norvegicus	RefSeq	GI_62658590-S	ILMN_281100	RGD1562319_PREDICTED	XM_001075805.1	XM_001075805.1		498165	109496769	XM_001075805.1	RGD1562319_predicted	XP_001075805.1	ILMN_1364872	0002510050	S	1605	GGGTGTGGCCGTCTCAAATGAGGCCGTCTCAAATCATCCATCTGTGATGG				12q11	PREDICTED: Rattus norvegicus similar to family with sequence similarity 55, member C (predicted) (RGD1562319_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13324703-S	ILMN_61667	GRPEL1	NM_024487.2	NM_024487.2		79563	67972657	NM_024487.2	Grpel1	NP_077813.1	ILMN_1364021	0001170368	S	638	TTTGGTGGGGGTGGTGAAGGACGCTTAGCTCTCTCCCTCAAGGCTCTGGA	14	-	79873461-79873483:79873484-79873510	14q21	Rattus norvegicus GrpE-like 1, mitochondrial (Grpel1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins [goid 774] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IEA]	GrpE#1; GrpE1	GrpE#1; GrpE1
Rattus norvegicus	RefSeq	GI_62638957-S	ILMN_301179	EHD2	NM_001024897.1	NM_001024897.1		361512	67846073	NM_001024897.1	Ehd2	NP_001020068.1	ILMN_1372744	0001660593	S	1462	TAGCGCCTGCTGATGGCAAGCTGAGTGGCTCTAAGGCCAAAACCTGGATG	1	-	76292695-76292744	1q21	Rattus norvegicus EH-domain containing 2 (Ehd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]	MGEPS	MGEPS
Rattus norvegicus	RefSeq	GI_62646241-S	ILMN_52190	RGD1305725_PREDICTED	XM_342561.3	XM_342561.3		362255	109469142	XM_342561.3	RGD1305725_predicted	XP_342562.3	ILMN_1359955	0004060066	S	733	AGCCTCTCCTCGCTGGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAA	3	+	148625146-148625160:148651143-148651177	3q42	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 102 (predicted) (RGD1305725_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424323-S	ILMN_297204	KCNH5	NM_133610.1	NM_133610.1		171146	19424323	NM_133610.1	Kcnh5	NP_598294.1	ILMN_1358085	0001450594	S	2894	GATAAAGCTGGTGAGGCCCGAAGTCCTCTAGAACACAGTCCCAGCCAGGC	6	-	97484750-97484799	6q24	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 5 (Kcnh5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Eag2	Eag2
Rattus norvegicus	RefSeq	GI_62660701-S	ILMN_278200	RGD1560636_PREDICTED	XM_001063601.1	XM_001063601.1		305467	109500811	XM_001063601.1	RGD1560636_predicted	XP_001063601.1	ILMN_1357740	0004120441	S	3770	TGGGCTTGCCCCTAGGGTAAGGATACCCAACCCTCAACAACAAAACACAA				14q21	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560636_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648380-S	ILMN_65849	RGD1565101_PREDICTED	XM_578387.2	XM_578387.2		502886	109472539	XM_578387.2	RGD1565101_predicted	XP_578387.2	ILMN_1360212	0005340017	S	2625	GGCCCAGCACCAATGTACCCAATCTCCACCCAAGACTCAGCAGGATACAG	4	+	159316279-159316328	4q42	PREDICTED: Rattus norvegicus similar to fork head transcription factor Fhx (predicted) (RGD1565101_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650143-S	ILMN_271106	LRRC47_PREDICTED	XM_001076460.1	XM_001076460.1		362672	109477766	XM_001076460.1	Lrrc47_predicted	XP_001076460.1	ILMN_1360424	0003390292	S	1669	AGGTCCGAGTGGTGGACCTGGAAGGCAGCTTGAAAGTGGTGTACCCATCC				5q36	PREDICTED: Rattus norvegicus leucine rich repeat containing 47 (predicted) (Lrrc47_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42627862-S	ILMN_271468	SLC6A5	NM_203334.1	NM_203334.1		171148	42627862	NM_203334.1	Slc6a5	NP_976079.1	ILMN_1374850	0004540139	S	6593	TATGCTCCGTCACTAGGGTGCTGTTTCGATGGCAACTGGGAACTGCCCTG	1	+	99793051-99793100	1q22	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, glycine), member 5 (Slc6a5), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence IDA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	GLYT2	GLYT2
Rattus norvegicus	RefSeq	GI_62638283	ILMN_284197	RGD1559424_PREDICTED	XR_009046.1	XR_009046.1		292456	109514390	XR_009046.1	RGD1559424_predicted		ILMN_1650197	0005050687	S	336	TGCCACCAAAGTGCAGAAATGTTTGACCCAGTGGATAGACCTATTGGGCC				1p13	PREDICTED: Rattus norvegicus similar to Retinoic acid early inducible protein 1 beta precursor (RAE-1beta) (predicted) (RGD1559424_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641466-S	ILMN_282274	CTF2_PREDICTED	XM_001080300.1	XM_001080300.1		293515	109462938	XM_001080300.1	Ctf2_predicted	XP_001080300.1	ILMN_1355944	0004480601	S	478	ACTCTGGGTATAGTCCCTTTCGGGGCCTCAGCCTTTGAGAGGAAATGCCG				1q36	PREDICTED: Rattus norvegicus cardiotrophin 2 (predicted) (Ctf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27719656-S	ILMN_272831	RGL3_PREDICTED	XM_001077564.1	XM_001077564.1		300444	109484377	XM_001077564.1	Rgl3_predicted	XP_001077564.1	ILMN_2040657	0006290382	S	2034	CTATCGGAGCATCTTGCTTACTTGTCAGGATAAAGCCCCCAGCGTGGTGC				8q13	PREDICTED: Rattus norvegicus ral guanine nucleotide dissociation stimulator-like 3 (predicted) (Rgl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538864-S	ILMN_276608	PDE8B	NM_199268.1	NM_199268.1		309962	40538864	NM_199268.1	Pde8b	NP_954889.1	ILMN_1348973	0005420433	S	2224	CACACCTGCCAGCCCTGATGCAACACCTGGCCGACAACTATAAACACTGG	2	-	25352877-25352926	2q12	Rattus norvegicus phosphodiesterase 8B (Pde8b), mRNA.		A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Alters the level of transcription of target genes, usually by binding to a transcription factor, when phosphorylated by a sensor that detects the presence of a particular signal substance outside the cell [goid 156] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RNPDE8B	RNPDE8B
Rattus norvegicus	RefSeq	GI_61557429-S	ILMN_275365	DHX30	NM_001013249.1	NM_001013249.1		367172	61557429	NM_001013249.1	Dhx30	NP_001013267.1	ILMN_1357694	0002470528	S	3559	TGATTCACGAACTGTGCGGTTGCTAAGGGAGCTTCGGCGGGCCCTAGGAA	8	-	114438607-114438656	8q32	Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 30 (Dhx30), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC109411	MGC109411
Rattus norvegicus	RefSeq	GI_62661282-S	ILMN_50386	LOC497702	XM_579713.1	XM_579713.1		497702	62661282	XM_579713.1	LOC497702	XP_579713.1	ILMN_1357998	0003990092	S	794	TTCAGCCTGTAGTCTGCTGGCTCTGTTGTCCTGGGGAGGAGTGAGGCAGA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_178103 (LOC497702), mRNA.					
Rattus norvegicus	RefSeq	GI_62665926-S	ILMN_264357	JMJD1C	XM_001080424.1	XM_001080424.1		171120	109510023	XM_001080424.1	Jmjd1c	XP_001080424.1	ILMN_1355515	0000520056	S	547	CCTAGCCAGACTCAGGGATCAAAGAGCAGACAGATTCAGTGGCCTGCGCT				20p11	PREDICTED: Rattus norvegicus jumonji domain containing 1C (Jmjd1c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665924-S	ILMN_264357	JMJD1C	XM_001080424.1	XM_001080424.1		171120	109510023	XM_001080424.1	Jmjd1c	XP_001080424.1	ILMN_1354357	0001690041	S	7561	AGAGCCTGCACTCTGGTTCAGTTCCTTGGAGATGCCATTGTCCTGCCAGC				20p11	PREDICTED: Rattus norvegicus jumonji domain containing 1C (Jmjd1c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_38454319-S	ILMN_296633	HRPAP20	NM_198783.1	NM_198783.1		362495	38454319	NM_198783.1	Hrpap20	NP_942078.1	ILMN_1352329	0003710093	S	1741	GCATGGTGATGGAGGGAGGCAGAGTAACAGCGAAGAGGGGAGATGAATGG	5	+	39944647-39944696	5q21	Rattus norvegicus hormone-regulated proliferation associated protein 20 (Hrpap20), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]	Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656841-S	ILMN_48562	LOC363666	XM_343955.2	XM_343955.2		363666	62656841	XM_343955.2	LOC363666	XP_343956.2	ILMN_1360456	0006380128	S	1491	CTCTCTGAAGGTGTTTATACTCAGCATCTGTCTCGGGCCTGCGGCCTGGC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4932411E22 (LOC363666), mRNA.					
Rattus norvegicus	RefSeq	GI_19923708-S	ILMN_275902	KCNK10	NM_023096.2	NM_023096.2		65272	19923708	NM_023096.2	Kcnk10	NP_075584.1	ILMN_2039953	0005290598	S	2974	GACACACCGAGGAGGACCATGGCATCTTTCCATCTCAGGGCTTCCTGTCC	6	-	122600189-122600238	6q32	Rattus norvegicus potassium channel, subfamily K, member 10 (Kcnk10), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	TREK2	TREK2
Rattus norvegicus	RefSeq	GI_62652159-S	ILMN_55197	LOC366873	XM_345816.2	XM_345816.2		366873	62652159	XM_345816.2	LOC366873	XP_345817.2	ILMN_1354117	0002350133	S	1036	GATTTCAGAGCCTTGTATCAGCTCTCTTCAACGGCCACCAGCTCTTGGAC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC366873), mRNA.					
Rattus norvegicus	RefSeq	GI_62663386	ILMN_51574	LOC498725	XM_579868.1	XM_579868.1		498725	62663386	XM_579868.1	LOC498725	XP_579868.1	ILMN_1650348	0004230168	S	639	ACGGCTTTGGCAGTGCTGGCAGTGCAATCATTTGTCCCCACACCTGTGAC					PREDICTED: Rattus norvegicus LOC498725 (LOC498725), mRNA.					
Rattus norvegicus	RefSeq	GI_56090408-S	ILMN_283091	RGD1359127	NM_001007657.1	NM_001007657.1		299612	56090408	NM_001007657.1	RGD1359127	NP_001007658.1	ILMN_1371628	0004210008	S	1467	GGAGCCCCGAATCGCCTTCTCGGGTTGGACAACAGCTGCAGAAGAAGGAA	7	+	10903572-10903621	7q11	Rattus norvegicus similar to RIKEN cDNA 2310011J03 (RGD1359127), mRNA.				MGC94198	MGC94198
Rattus norvegicus	RefSeq	GI_62658080-S	ILMN_70137	LOC501778	XM_577179.1	XM_577179.1		501778	62658080	XM_577179.1	LOC501778	XP_577179.1	ILMN_1373781	0000580010	S	830	GACCCTCCCCAGCCGCAGGAAGCCAATGGGAAACGGAAGTTCATTTGCGA					PREDICTED: Rattus norvegicus similar to ribosomal protein L37 (LOC501778), mRNA.					
Rattus norvegicus	RefSeq	GI_62652647	ILMN_292302	RGD1308613	NM_001014086.1	NM_001014086.1		315095	62078904	NM_001014086.1	RGD1308613	NP_001014108.1	ILMN_1650250	0004150156	S	1736	CAGAAGCATTCCTGGTCCGCAATAGGCCCAGACAACGCAGAGCCTGACAG	7	-	114422172-114422221	7q34	Rattus norvegicus similar to serine/threonine kinase 22A (spermiogenesis associated); testis-specific serine/threonine kinase (RGD1308613), mRNA.				MGC105906	MGC105906
Rattus norvegicus	RefSeq	GI_62640914-S	ILMN_60687	LOC499206	XM_574492.1	XM_574492.1		499206	62640914	XM_574492.1	LOC499206	XP_574492.1	ILMN_1364865	0004150167	S	1433	CACACCAGACTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTAGACTG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499206), mRNA.					
Rattus norvegicus	RefSeq	GI_19923677-S	ILMN_288635	ABCC9	NM_013040.2	NM_013040.2		25560	19923677	NM_013040.2	Abcc9	NP_037172.2	ILMN_1368143	0005700373	S	6405	GCTGGTGCTGCAGAAGGTTCTGCTGGGGCTGATACCCATGACGTTTGTTG				4q44	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 9 (Abcc9), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.2 subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SUR1 subunit stimulates channel activity [goid 8282] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The translocation of the cell body forward during cell migration, mediated by tractional force on its substrate and tension in the cortical cytoskeleton. Adhesions transmit propulsive forces and serve as traction points over which the cell moves [goid 6932] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence TAS]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IPI]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Sur2	Sur2
Rattus norvegicus	RefSeq	GI_25742815-S	ILMN_300072	TIMM17A	NM_019351.1	NM_019351.1		54311	25742815	NM_019351.1	Timm17a	NP_062224.1	ILMN_1367338	0000670458	S	598	GAAAGCCTTAGGTGGGACACCGGCGGCCAAGCAGGCCATCAAGAGACATT	13	-	48297766-48297815	13q13	Rattus norvegicus translocase of inner mitochondrial membrane 17 homolog A (yeast) (Timm17a), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IMP]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IPI]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IPI]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IPI]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	Timm17	Timm17
Rattus norvegicus	RefSeq	GI_62638808-S	ILMN_273877	RGD1566248_PREDICTED	XR_007895.1	XR_007895.1		499060	109460942	XR_007895.1	RGD1566248_predicted		ILMN_1374861	0002060176	S	1654	GGAACAGGCCAGAACTCTGCGAGAGACTAATCTTGATGCCCAGACCCACC				1q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14345 (predicted) (RGD1566248_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661727-S	ILMN_300129	LOC364427	NM_001024803.1	NM_001024803.1		364427	67078411	NM_001024803.1	LOC364427	NP_001019974.1	ILMN_1349021	0002120204	S	1806	TGGTGCCATGGTCCCAAGTTTGGTGAAGGTTTCGGCATCATCCGATCCTG	15	-	55944815-55944864	15q11	Rattus norvegicus similar to CG5407-PA, isoform A (LOC364427), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643977-S	ILMN_51910	LOC502546	XM_578032.1	XM_578032.1		502546	62643977	XM_578032.1	LOC502546	XP_578032.1	ILMN_1356113	0002810484	S	472	GGGAGAATTCCCTCTTCACAGATTGCTGCCTGGTGGAGATGATGGGCTTC					PREDICTED: Rattus norvegicus similar to TDPOZ4 (LOC502546), mRNA.					
Rattus norvegicus	RefSeq	GI_47576972-S	ILMN_266937	OLR262	NM_001000221.1	NM_001000221.1		293400	47576972	NM_001000221.1	Olr262	NP_001000221.1	ILMN_1355996	0002570458	S	291	TCTTGGGTGTGCCATCCAGCTCAGTTTAGCTGCTTTTTGTGGTACAGTTG	1	-	165821143-165821192	1q33	Rattus norvegicus olfactory receptor 262 (Olr262), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr262	Olr262
Rattus norvegicus	RefSeq	GI_62650816	ILMN_280399	DHRS7	NM_001013098.1	NM_001013098.1		299131	61556947	NM_001013098.1	Dhrs7	NP_001013116.1	ILMN_1650087	0003780670	S	1440	GGACAGGAATCCCTATACCCTTGAGTGCTCCACCTTCAGAACAACCCATT	6	-	95005938-95005987	6q24	Rattus norvegicus dehydrogenase/reductase (SDR family) member 7 (Dhrs7), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC124901; DR-NR#3	MGC124901; DR-NR#3
Rattus norvegicus	RefSeq	GI_16758077-S	ILMN_276254	IKBKB	NM_053355.1	NM_053355.1		84351	16758077	NM_053355.1	Ikbkb	NP_445807.1	ILMN_1357714	0001570020	S	2755	GACGGTGATACCAAGCTCCCTGATGTCCCGGCTCCTTTAAGCCACAGAGC	16	+	73857821-73857870	16q12.5	Rattus norvegicus inhibitor of kappaB kinase beta (Ikbkb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein serine/threonine kinase that phosphorylates IkappaB, thereby targeting this for proteasomal degradation and allowing the nuclear translocation of kB. Composed of alpha, beta and gamma subunits, the latter not having kinase activity but presumed to play a regulatory role [goid 8385] [evidence IPI]	The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1782] [evidence ISS]; A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence IDA]; The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IMP]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + IkappaB protein = ADP + IkappaB phosphoprotein [goid 8384] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	AIM-1	AIM-1
Rattus norvegicus	RefSeq	GI_62657336-S	ILMN_272387	RGD1566063_PREDICTED	XM_001081684.1	XM_001081684.1		498024	109492227	XM_001081684.1	RGD1566063_predicted	XP_001081684.1	ILMN_1372689	0001340451	S	1057	GGAGGATAAGGTGTCCTGGCTGTGGTTGGAGCATGGGAGTTGCTGTTCCC				10q32.3	PREDICTED: Rattus norvegicus similar to Potassium channel tetramerisation domain containing protein 2 (predicted) (RGD1566063_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577182-S	ILMN_265068	OLR34	NM_001000689.1	NM_001000689.1		404894	47577182	NM_001000689.1	Olr34	NP_001000689.1	ILMN_1351277	0000730180	S	390	CCCTATGATTATGAACCATCAGTTCTGTGTTCAGATGACACTGGCTTCCC	1	+	142923319-142923368	1q32	Rattus norvegicus olfactory receptor 34 (Olr34), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr34	Olr34
Rattus norvegicus	RefSeq	GI_62663841-S	ILMN_278208	CDC2L5	XM_001053539.1	XM_001053539.1		306998	109505847	XM_001053539.1	Cdc2l5	XP_001053539.1	ILMN_1352533	0004590632	S	4627	CATGGTCCTATCACGGTCCTCACAAACAGCAGTGACCCTTCCACAGGGCC				17q12.1	PREDICTED: Rattus norvegicus cell division cycle 2-like 5 (cholinesterase-related cell division controller), transcript variant 1 (Cdc2l5), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651332-S	ILMN_58308	LOC500733	XM_576112.1	XM_576112.1		500733	62651332	XM_576112.1	LOC500733	XP_576112.1	ILMN_1374013	0002570338	S	36	TTTATGAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC500733), mRNA.					
Rattus norvegicus	RefSeq	GI_16758747-S	ILMN_298895	DYNC1I2	NM_053880.1	NM_053880.1		116659	16758747	NM_053880.1	Dync1i2	NP_446332.1	ILMN_1367536	0001780601	S	1989	CCTGGAGGGTGGCCGTAGCCTTATCGAGTCTGGCAAAGAGGATGAAGTAG	3	+	53532684-53532733	3q21	Rattus norvegicus dynein cytoplasmic 1 intermediate chain 2 (Dync1i2), mRNA.	Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence IPI]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence IPI]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]	Dnci2; MGC93277	Dnci2; MGC93277
Rattus norvegicus	RefSeq	GI_62660229-S	ILMN_265580	RGD1562932_PREDICTED	XM_577316.1	XM_577316.1		501893	62660229	XM_577316.1	RGD1562932_predicted	XP_577316.1	ILMN_1372841	0004210128	S	1206	GTTGCAGCACACAGCCAACTGGAGCAGGATCAATGTGGAACAATACCCTG	14	-	15515563-15515612	14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1562932_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850641-S	ILMN_280924	AKAP3	NM_001005557.1	NM_001005557.1		312720	53850641	NM_001005557.1	Akap3	NP_001005557.1	ILMN_1351919	0001580671	S	2550	GAAGCGTCGGGGAGGTTCTGCAGTCGGTGCTTAGGTATGAGAAGGAGCGA	4	+	163263123-163263172	4q42	Rattus norvegicus A kinase (PRKA) anchor protein 3 (Akap3), mRNA.	A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]	Any process involved in the controlled movement of a cell [goid 6928] [evidence IEA]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence ISS]	MGC93915	MGC93915
Rattus norvegicus	RefSeq	GI_62078448-S	ILMN_294421	LRRC48	NM_001013857.1	NM_001013857.1		287371	62078448	NM_001013857.1	Lrrc48	NP_001013879.1	ILMN_1356648	0001170450	S	1730	AGAGCATGGACCCAGCCCCTGAGAGTTATGGGATTTCTTTCATTCACCCC	10	+	46662578-46662627	10q22	Rattus norvegicus leucine rich repeat containing 48 (Lrrc48), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1309150	RGD1309150
Rattus norvegicus	RefSeq	GI_47577954-S	ILMN_299725	OLR1118	NM_001000883.1	NM_001000883.1		405182	47577954	NM_001000883.1	Olr1118	NP_001000883.1	ILMN_1356970	0002690133	S	370	GTGGCCGTTTGTCACCCTCTGAGGTATTCCACAATAATGAATCCTTCCTG	8	-	16185236-16185285	8q12	Rattus norvegicus olfactory receptor 1118 (Olr1118), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1118	Olr1118
Rattus norvegicus	RefSeq	GI_62652935-S	ILMN_48633	MAPK8IP2	XM_235565.4	XM_235565.4		315220	109481186	XM_235565.4	Mapk8ip2	XP_235565.4	ILMN_1349937	0001450286	S	2760	TTGCTGGGTGGATCGCTTCGATGTGCAGTTCTTGGGCTCTGTGGAGGTAC	7	+	127778224-127778273	7q34	PREDICTED: Rattus norvegicus mitogen-activated protein kinase 8 interacting protein 2 (Mapk8ip2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence IEA]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence IEA]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_18959235-S	ILMN_270939	PECR	NM_133299.1	NM_133299.1		113956	18959235	NM_133299.1	Pecr	NP_579833.1	ILMN_1353117	0004920181	S	902	CTCGCAACTTCACGATACCAGATCATGACAACTGGCCTGTGGGAGCTGGG	9	-	71415047-71415076:71417624-71417643	9q33	Rattus norvegicus peroxisomal trans-2-enoyl-CoA reductase (Pecr), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+ [goid 19166] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27545442-S	ILMN_276851	CEACAM10	NM_173339.1	NM_173339.1		287009	27545442	NM_173339.1	Ceacam10	NP_775461.1	ILMN_1352135	0002470148	S	553	AACTGGGACCAAGTTCTGGGAAAGAAGGCTGATGTTCACTCGTGAACCCC	1	+	80076404-80076453	1q21	Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule 10 (Ceacam10), mRNA.					
Rattus norvegicus	RefSeq	GI_62639037-S	ILMN_57006	LOC365196	XM_577766.1	XM_577766.1		365196	62639037	XM_577766.1	LOC365196	XP_577766.1	ILMN_1350641	0000130132	S	1158	GGAGGTGGCTTTGTTGGTCAAGGAGAAGGGGGAGACTTCAATCCACAAGG					PREDICTED: Rattus norvegicus similar to Nucleolin (Protein C23) (LOC365196), mRNA.					
Rattus norvegicus	RefSeq	GI_62650651-S	ILMN_70290	RGD1311444_PREDICTED	XM_234092.4	XM_234092.4		314075	109478174	XM_234092.4	RGD1311444_predicted	XP_234092.4	ILMN_1355933	0004810242	S	2355	GATCTGTGAAAACATACCCCTAGATGAAAGCCGCAATGAGAAGCTGGACC	6	+	63704127-63704176	6q21	PREDICTED: Rattus norvegicus similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) (RGD1311444_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665322-S	ILMN_266528	DYNLRB2_PREDICTED	XM_001076519.1	XM_001076519.1		361415	109508831	XM_001076519.1	Dynlrb2_predicted	XP_001076519.1	ILMN_1356945	0002320035	S	129	ACCCTGGACAACTCCACAACGGTTCAGTATGCGGGTCTCCTCCACCAGCT				19q12	PREDICTED: Rattus norvegicus dynein light chain roadblock-type 2 (predicted) (Dynlrb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664488-S	ILMN_294513	RGD1309362	NM_001024884.1	NM_001024884.1		307415	67846045	NM_001024884.1	RGD1309362	NP_001020055.1	ILMN_1359065	0000540010	S	1059	GCAGAAGATTTGGCTCGAAGCCTTTGCAGCTGACCTACTGAGCATCATCC	18	+	56177949-56177998	18q12.1	Rattus norvegicus similar to interferon-inducible GTPase (RGD1309362), mRNA.				MGC116227	MGC116227
Rattus norvegicus	RefSeq	GI_62638322-S	ILMN_66482	LOC498983	XM_574273.1	XM_574273.1		498983	62638322	XM_574273.1	LOC498983	XP_574273.1	ILMN_1348822	0006180040	S	379	AGCCTCAGAGTCGTGGTGATGGTGGCTCGGGCTTTGGGGTGATCAGCAGT					PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC498983), mRNA.					
Rattus norvegicus	RefSeq	GI_57222307-S	ILMN_265618	OAS1K	NM_001009489.1	NM_001009489.1		494198	57222307	NM_001009489.1	Oas1k	NP_001009489.1	ILMN_1358567	0001090154	S	1095	GGGAAGTGCAGACGGAGGTTCCTGTATGTTTCTAGCAGGTGGATGAGGCC	12	-	36897116-36897128:36897276-36897278:36897279-36897302:36898409-36898418	12q16	Rattus norvegicus 2 ' -5 ' oligoadenylate synthetase 1K (Oas1k), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666458-S	ILMN_268549	RGD1566363_PREDICTED	XM_001062396.1	XM_001062396.1		313434	109512500	XM_001062396.1	RGD1566363_predicted	XP_001062396.1	ILMN_1355771	0006100102	S	2886	GTCCAGTTCCAGTGATGAAGCAGAGAACACCACGAGGAAGAGAAGGAGAC					PREDICTED: Rattus norvegicus similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1 (predicted) (RGD1566363_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650543-I	ILMN_65065	TSSC1_PREDICTED	XM_576012.1	XM_576012.1		362721	62650543	XM_576012.1	Tssc1_predicted	XP_576012.1	ILMN_1375485	0002680546	S	2247	CTGCCAGCCAGGAAGATCCTTGGAATCAGTTCTTGCCATCACCAGCCACC				6q16	PREDICTED: Rattus norvegicus tumor suppressing subtransferable candidate 1 (predicted) (Tssc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646781-S	ILMN_58209	RGD1562785_PREDICTED	XM_216085.4	XM_216085.4		296836	109471696	XM_216085.4	RGD1562785_predicted	XP_216085.3	ILMN_1364879	0006380239	S	1885	AGTCAGATAAGTGGGAAAAAGTTAACAAGACTTCCAGAAGAGGTGTCTCG	4	-	26989674-26989703:27000087-27000106	4q13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932412H11 (predicted) (RGD1562785_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664252-S	ILMN_53006	TAF7_PREDICTED	XM_226031.4	XM_226031.4		307485	109506497	XM_226031.4	Taf7_predicted	XP_226031.2	ILMN_1358227	0002260671	S	1183	GAAAGGCAAGCTTCAAGAAACCCAAGACAGAGCAAAGCGCCAGGAGGATC	18	-	30542018-30542067	18p11	PREDICTED: Rattus norvegicus TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa (predicted) (Taf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56119146-A	ILMN_271969	ARRDC3	NM_001007797.1	NM_001007797.1		309945	56119146	NM_001007797.1	Arrdc3	NP_001007798.1	ILMN_1376333	0006840398	S	1027	CCTGAAGCACCACCCAGTTATGCAGAGGTTGTAACGGAGGAACAGAGACG	2|NW_047635.1	-	299295-299338:299609-299614		Rattus norvegicus arrestin domain containing 3 (Arrdc3), mRNA.				LRRGT00048	LRRGT00048
Rattus norvegicus	RefSeq	GI_34879460-S	ILMN_60103	RGD1563576_PREDICTED	XM_240482.3	XM_240482.3		306617	109503559	XM_240482.3	RGD1563576_predicted	XP_240482.2	ILMN_1350055	0005270403	S	1917	GTACCATCTACTGTGTGAGCCGCGCTGGGACCTGGCGTTTCGTGCCTTCT	16	-	79430388-79430437	16q12.5	PREDICTED: Rattus norvegicus similar to mKIAA0711 protein (predicted) (RGD1563576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302015-S	ILMN_272430	OPN4	NM_138860.1	NM_138860.1		192223	20302015	NM_138860.1	Opn4	NP_620215.1	ILMN_1370657	0004760088	S	1933	GAGCCAAGCATCTTAGCCAGCCTTTGCAACCAGGCCGGACATCTCATTGG	16	-	10250026-10250075	16p15	Rattus norvegicus opsin 4 (Opn4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IDA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence ISS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A [goid 5502] [evidence ISS]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence IDA]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence ISS]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence ISS]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638380-S	ILMN_69481	LOC498993	XM_574283.1	XM_574283.1		498993	62638380	XM_574283.1	LOC498993	XP_574283.1	ILMN_1349099	0005720725	S	1031	GGAAGACGGAACTAGACAGAAACCCCGGAGCCAGGAAGGAGTCAACACGC					PREDICTED: Rattus norvegicus similar to LRRGT00021 (LOC498993), mRNA.					
Rattus norvegicus	RefSeq	GI_34932480-S	ILMN_54944	LOC364905	XM_344705.1	XM_344705.1		364905	34932480	XM_344705.1	LOC364905	XP_344706.1	ILMN_1356751	0001580520	S	1	TGGCGATGGTCAGAGTGAATAGATTTGGCTGTACCGGGGGCCTAGTTACC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC364905), mRNA.					
Rattus norvegicus	RefSeq	GI_62663232-S	ILMN_277622	RNF44	NM_001024795.1	NM_001024795.1		361212	67078431	NM_001024795.1	Rnf44	NP_001019966.1	ILMN_1359873	0005290095	S	1338	TGAGCAGACGCTGTGTGTGGTCTGCTTCAGTGACTTCGAGGTGCGGCAGC	17	+	15993602-15993613:15993686-15993723	17p14	Rattus norvegicus ring finger protein 44 (Rnf44), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660280-S	ILMN_60638	LOC360919	XM_341193.3	XM_341193.3		360919	109499550	XM_341193.3	LOC360919	XP_341194.3	ILMN_1359627	0000540487	S	2075	GAACACTCACGGCCTCCAGACAATTTAATGTGCAGCCACACCTCCCTGGG	14	-	18992921-18992970	14p22	PREDICTED: Rattus norvegicus similar to alpha-fetoprotein (LOC360919), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62639128-S	ILMN_283879	ZFP61	NM_001017512.1	NM_001017512.1		499094	62945379	NM_001017512.1	Zfp61	NP_001017512.1	ILMN_1357461	0006220576	S	1659	CGTGTGTACTGTGTGTGGTAAGGGCTACACTCTGAACTCGAACCTCCAGG	1	-	79505163-79505212	1q21	Rattus norvegicus zinc finger protein 61 (Zfp61), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655372-S	ILMN_262377	RGD1563309_PREDICTED	XM_001065445.1	XM_001065445.1		368088	109487473	XM_001065445.1	RGD1563309_predicted	XP_001065445.1	ILMN_1354261	0005570575	S	3228	GCCCATGGAGCCTGGTGAGGAAGAGAATGTGATGCTGGATCTTACTAAAC				9q35	PREDICTED: Rattus norvegicus similar to diacylglycerol kinase, delta 130kDa isoform 1 (predicted) (RGD1563309_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51491894-S	ILMN_295651	RPL15	NM_139114.2	NM_139114.2		245981	51491894	NM_139114.2	Rpl15	NP_620814.1	ILMN_1366604	0001450309	S	1504	TACAGTCTGCCCGTGGGTAGATGCTCAGGTTGCTGTCTCCTGGCATTGCC	15	+	9085105-9085154	15p16	Rattus norvegicus ribosomal protein L15 (Rpl15), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19924084-S	ILMN_276507	FAT3	NM_138544.1	NM_138544.1		191571	19924084	NM_138544.1	Fat3	NP_612553.1	ILMN_1352249	0001980450	S	14385	GAAGGAGAAGTGAGAGCTAAGCACGAGTGTGGGCGGAAGCCTTAGAAGCC	8	-	12701791-12701840	8q12	Rattus norvegicus FAT tumor suppressor homolog 3 (Drosophila) (Fat3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667055-S	ILMN_273536	ZMYM3	XM_001081960.1	XM_001081960.1		317260	109510912	XM_001081960.1	Zmym3	XP_001081960.1	ILMN_1359133	0000510333	S	4185	TCGCATTCTGGCTGTGCGGGAGATTTATGAGGAACTTGGTCGTCCTGGGG	X	-	89477877-89477926	Xq31	PREDICTED: Rattus norvegicus zinc finger, MYM-type 3 (Zmym3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649421-S	ILMN_283124	LOC362564	XM_001063544.1	XM_001063544.1		362564	109476929	XM_001063544.1	LOC362564	XP_001063544.1	ILMN_1372980	0003390324	S	1609	GCAGGGCTGTAAAGCATCAGAGTAGCCTGTCGGGACCACAATACGAACTG				5q35	PREDICTED: Rattus norvegicus hypothetical LOC362564 (LOC362564), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62642031	ILMN_264855	TRPM3_PREDICTED	XM_001079904.1	XM_001079904.1		309407	109463708	XM_001079904.1	Trpm3_predicted	XP_001079904.1	ILMN_1650447	0002320390	S	5085	CTCTGACAGTGAGGAAAATGAGGCCAGAGGCCGGAGAGCTGCCAATCCGA				1q51	PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 3 (predicted) (Trpm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655024-S	ILMN_268021	RGD1306332_PREDICTED	XM_001060870.1	XM_001060870.1		299507	109487062	XM_001060870.1	RGD1306332_predicted	XP_001060870.1	ILMN_1349109	0006420053	S	1802	GGTTGGTGACCGAGGATGCTGTGCAGTCTTACAAGAGCAGTGCAAAGGTG				9q22	PREDICTED: Rattus norvegicus similar to HCV NS3-transactivated protein 1 (predicted) (RGD1306332_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648907-S	ILMN_271402	MELK_PREDICTED	XM_001064686.1	XM_001064686.1		362510	109476341	XM_001064686.1	Melk_predicted	XP_001064686.1	ILMN_1364553	0004210280	S	1810	GGAACAAGAAGAAGGGCTCTGCCAAAGATGGGCCAAGAAGGCGAAAGCTG				5q22	PREDICTED: Rattus norvegicus maternal embryonic leucine zipper kinase (predicted) (Melk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653147-S	ILMN_269112	COPZ1_PREDICTED	XM_001069027.1	XM_001069027.1		315345	109483028	XM_001069027.1	Copz1_predicted	XP_001069027.1	ILMN_1364072	0005080021	S	428	AGCGAGCTTTGCTGGAGAACATGGAGGGGCTCTTCTTGGCTGTGGATGAA				7q36	PREDICTED: Rattus norvegicus coatomer protein complex, subunit zeta 1 (predicted) (Copz1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650232-S	ILMN_49517	LOC313831	XM_233802.3	XM_233802.3		313831	62650232	XM_233802.3	LOC313831	XP_233802.3	ILMN_1370407	0002640072	S	3721	TGCCTGGGGGCATTCGCTTCACGCCATCTTTCGTCTCCACAGGGGTGATC				6q11	PREDICTED: Rattus norvegicus similar to vitrin (LOC313831), mRNA.					
Rattus norvegicus	RefSeq	GI_62659498-S	ILMN_50818	DHX9_PREDICTED	XM_239780.4	XM_239780.4		304859	109497979	XM_239780.4	Dhx9_predicted	XP_239780.4	ILMN_1370524	0003990113	S	4223	GGTGGGGGCTATAGAGGATCTGGAGGATTCCAGCGAAGGGGTTATGGAGG	13	-	68471607-68471656	13q21	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) (Dhx9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654868-S	ILMN_288777	RGD1561213_PREDICTED	XR_008625.1	XR_008625.1		367222	109486825	XR_008625.1	RGD1561213_predicted		ILMN_1366117	0003440603	S	19	AAGAGGTGAGGCACTCGGTACATGCTCTCTAGGCCCTTTAGGACACATGG				9q12	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561213_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341232-S	ILMN_297515	LGSN	NM_181383.2	NM_181383.2		316304	31341232	NM_181383.2	Lgsn	NP_852048.1	ILMN_1367567	0002640020	S	1815	GCCCCTCCCCCACGGATTACTGGGCAGATGAAATGGGATTGGTGAGATCC	9	+	29871468-29871517	9q21	Rattus norvegicus lengsin, lens protein with glutamine synthetase domain (Lgsn), mRNA.		The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6542] [evidence IEA]; The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamate + NH3 = ADP + phosphate + L-glutamine [goid 4356] [evidence IEA]	Lgs	Lgs
Rattus norvegicus	RefSeq	GI_31543463-S	ILMN_281736	PC	NM_012744.2	NM_012744.2		25104	31543463	NM_012744.2	Pc	NP_036876.2	ILMN_1368486	0002100075	S	3716	TGGGACAGCACACACACTACCTGCAATGGCCCTCCCATTCCCTTCAGCTA	1	+	207212481-207212530	1q42	Rattus norvegicus pyruvate carboxylase (Pc), nuclear gene encoding mitochondrial protein, mRNA.					
Rattus norvegicus	RefSeq	GI_62663925-S	ILMN_277398	SLC39A12_PREDICTED	XM_001072845.1	XM_001072845.1		291328	109506197	XM_001072845.1	Slc39a12_predicted	XP_001072845.1	ILMN_1360213	0006980706	S	2022	GGACTGTACATTGGTCTCTCGGTGTCTGCTGATCCACGTGTCCAAGACTG				17q12.3	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 12 (predicted) (Slc39a12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650547-S	ILMN_65241	LOC298842	XM_216656.3	XM_216656.3		298842	62650547	XM_216656.3	LOC298842	XP_216656.3	ILMN_1356943	0002900736	S	999	TTCACAGTGCAGATACCCCACAAGCGCCTACGACAGCCCCCACCCTGCTA					PREDICTED: Rattus norvegicus similar to Prolactin regulatory element-binding protein (Mammalian guanine nucleotide exchange factor mSec12) (LOC298842), mRNA.					
Rattus norvegicus	RefSeq	GI_62660633-S	ILMN_64393	SH3TC1_PREDICTED	XM_223527.3	XM_223527.3		305441	62660633	XM_223527.3	Sh3tc1_predicted	XP_223527.3	ILMN_1357201	0001990465	S	4404	CTCAGAGGAGCCCAATCTTTTGCAGGAGCAATCTGTGAGCAGGAGCTGAC				14q21	PREDICTED: Rattus norvegicus SH3 domain and tetratricopeptide repeats 1 (predicted) (Sh3tc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018561-S	ILMN_294089	NECAP2	NM_199096.1	NM_199096.1		298598	40018561	NM_199096.1	Necap2	NP_954527.1	ILMN_1361729	0005130711	S	1583	CTGGGCTCACAGGTTCATGGTGTAGCTGGCCCACTTGTCTTTCCCGGATG	5	-	159924949-159924998	5q36	Rattus norvegicus NECAP endocytosis associated 2 (Necap2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72598	MGC72598
Rattus norvegicus	RefSeq	GI_40254771-S	ILMN_295687	SNX16	NM_022289.2	NM_022289.2		64088	40254771	NM_022289.2	Snx16	NP_071625.2	ILMN_1370095	0002450088	S	2044	TCACTGGGGTTGCCTCTTTCAGAACACTACCTCTTTTTGCTAATCAAGGC	2	+	93296097-93296146	2q23	Rattus norvegicus sorting nexin 16 (Snx16), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs [goid 45022] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656038-S	ILMN_273069	LOC497899	NM_001017472.1	NM_001017472.1		497899	62945299	NM_001017472.1	LOC497899	NP_001017472.1	ILMN_1351260	0005290600	S	746	CCCAGGAACCAGCCTTGGGATTATGGTGTTGCTGCTCCTTCTGCACAGCT	10	-	36776546-36776595	10q22	Rattus norvegicus similar to hypothetical protein 4930503F14 (LOC497899), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62945299	ILMN_273069	LOC497899	NM_001017472.1	NM_001017472.1		497899	62945299	NM_001017472.1	LOC497899	NP_001017472.1	ILMN_1530465	0002340292	S	1029	TGTGGGCTTATTTCTCTACCTCATAAGGGAAAAATGTGGAGTTAAATAAA	10	-	36776263-36776312	10q22	Rattus norvegicus similar to hypothetical protein 4930503F14 (LOC497899), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665439-S	ILMN_286738	RGD1307980_PREDICTED	XM_001053807.1	XM_001053807.1		292087	109509045	XM_001053807.1	RGD1307980_predicted	XP_001053807.1	ILMN_1371593	0000360427	S	4212	GCATGAAGGACGGCAGAAAGACCAAGGGAGCATGGATGACCTGCCAGTGG				19q12	PREDICTED: Rattus norvegicus similar to mKIAA0133 protein (predicted) (RGD1307980_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718740-S	ILMN_289294	LOC363418	XM_001056019.1	XM_001056019.1		363418	109496262	XM_001056019.1	LOC363418	XP_001056019.1	ILMN_1366443	0005050133	S	30	CTCTACTCCCTTGACCCAGAAAACCCCACGAAATCACGCAAGTCAAGAGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) (LOC363418), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865555-A	ILMN_284085	EIF3E	NM_001011990.1	NM_001011990.1		299872	58865555	NM_001011990.1	Eif3e	NP_001011990.1	ILMN_1376581	0006450463	S	784	CGTCATAACCAACAAAGATGTGCGGAAACGCCGGCAGGTGCTGAAAGACC	7	-	79026043-79026092	7q31	Rattus norvegicus eukaryotic translation initiation factor 3, subunit E (Eif3e), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659468-S	ILMN_299525	RNF2	NM_001025667.1	NM_001025667.1		304850	71043689	NM_001025667.1	Rnf2	NP_001020838.1	ILMN_1371460	0004760673	S	1677	GTGGCTCCTTTAGGGAGGACACCTCGACCTAGGAGGTTTTCACAGTTCTG	13	-	66346315-66346364	13q21	Rattus norvegicus ring finger protein 2 (Rnf2), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence IEA]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence ISS]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence IEA]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence IEA]; Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The establishment, maintenance and elaboration of the anterior/posterior axis [goid 9948] [evidence IEA]; The establishment, maintenance and elaboration of the anterior/posterior axis [goid 9948] [evidence ISS]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence IEA]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114502	MGC114502
Rattus norvegicus	RefSeq	GI_62644567-S	ILMN_276159	LOC310958	XM_001078082.1	XM_001078082.1		310958	109467693	XM_001078082.1	LOC310958	XP_001078082.1	ILMN_1363540	0000380079	S	1810	GCCAAAGAGAGTGCCAGTCAGCACACTGCGGAAGAGGAAGATGATGACCC					PREDICTED: Rattus norvegicus similar to zinc finger, ZZ domain containing 3 (LOC310958), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644655-S	ILMN_276159	LOC310958	XM_001078082.1	XM_001078082.1		310958	109467693	XM_001078082.1	LOC310958	XP_001078082.1	ILMN_1356846	0002190603	S	3848	AGTACACAGCCTTCTGCCTCTGTGTGGAGTTGTCAGTACAGCTCGTCAGA					PREDICTED: Rattus norvegicus similar to zinc finger, ZZ domain containing 3 (LOC310958), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653424-A	ILMN_264532	RPS25	NM_001005528.1	NM_001005528.1		122799	53850581	NM_001005528.1	Rps25	NP_001005528.1	ILMN_1376541	0004010494	S	13	GGTCCACACTACTCTCTGAGTTTCGCCATGCCGCCCAAAGACGACAAGAA	8	+	47374315-47374341:47374342-47374344:47374575-47374594	8q22	Rattus norvegicus ribosomal protein s25 (Rps25), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_40786496-S	ILMN_268475	ICA1L	NM_199400.1	NM_199400.1		316432	40786496	NM_199400.1	Ica1l	NP_955432.1	ILMN_2039807	0002680730	S	894	GAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCAC	9	-	58556245-58556275:58564469-58564487	9q31	Rattus norvegicus islet cell autoantigen 1-like (Ica1l), mRNA.					
Rattus norvegicus	RefSeq	GI_62646134-S	ILMN_69852	LOC502664	XM_578159.1	XM_578159.1		502664	62646134	XM_578159.1	LOC502664	XP_578159.1	ILMN_1359013	0002640097	S	1060	CAAAGGTACGGATGTGGCAAACCAGCGGAACTTGCAGTGTGCCGGTCCTT					PREDICTED: Rattus norvegicus similar to galactokinase 2 (LOC502664), mRNA.					
Rattus norvegicus	RefSeq	GI_62652992-S	ILMN_51357	TMEM16F_PREDICTED	XM_235640.4	XM_235640.4		315272	109481230	XM_235640.4	Tmem16f_predicted	XP_235640.4	ILMN_1361175	0000450100	S	2658	TCACGAGAGTCACCTCAAAGACCTGACCAAAAACATGGGGCTCATCGCCG	7	+	134621305-134621354	7q35	PREDICTED: Rattus norvegicus transmembrane protein 16F (predicted) (Tmem16f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658350-S	ILMN_66620	LOC363855	XM_577203.1	XM_577203.1		363855	62658350	XM_577203.1	LOC363855	XP_577203.1	ILMN_1361306	0004730619	S	1318	AGGGGACCTGGGACCTGGACGACTGCCAAGGACTGAGGACAGAAATGTTA				12p12	PREDICTED: Rattus norvegicus similar to MAP kinase kinase 7 beta 2 (LOC363855), mRNA.					
Rattus norvegicus	RefSeq	GI_47087082-S	ILMN_286598	TCF19	NM_213561.2	NM_213561.2		406195	78187976	NM_213561.2	Tcf19	NP_998726.2	ILMN_1371788	0000060315	S	1300	GCCAGCATACCAGGCAAGTCCCCTGTACTGAGCACCCACCCTAACCCTAA					Rattus norvegicus transcription factor 19 (Tcf19), mRNA.					
Rattus norvegicus	RefSeq	Rn.98431	ILMN_301130	CMTM6	NM_001007802.2	NM_001007802.2		316035	82617558	NM_001007802.2	Cmtm6	NP_001007803.1	ILMN_1530543	0006840039	S	909	AGGAACTGGTTAATTTCTGTTGTGTCGTTAGAGATTTAATTTGTGTTTAA	8	+	119165838-119165887	8q32	Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 6 (Cmtm6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Cklfsf6; Da2-17; LRRGT00102	Cklfsf6; Da2-17; LRRGT00102
Rattus norvegicus	RefSeq	GI_56119123-A	ILMN_301130	CMTM6	NM_001007802.2	NM_001007802.2		316035	82617558	NM_001007802.2	Cmtm6	NP_001007803.1	ILMN_1376882	0001230181	S	474	GTTTCTACTGGACTTCGTCGTCATGCTGTGTGAGAAGCTGCGGGAGAGCC	8	+	119165403-119165452	8q32	Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 6 (Cmtm6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Cklfsf6; Da2-17; LRRGT00102	Cklfsf6; Da2-17; LRRGT00102
Rattus norvegicus	RefSeq	GI_62653848-S	ILMN_50452	APH1B	XM_217185.4	XM_217185.4		300802	109483586	XM_217185.4	Aph1b	XP_217185.2	ILMN_1359346	0002940242	S	518	CTTGGGGCCAGGCACAGTGGGCATTCATGGTGATTCTCCTCAGTTCTTCC	8	-	71136768-71136817	8q24	PREDICTED: Rattus norvegicus anterior pharynx defective 1b homolog (C. elegans) (Aph1b), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]	The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641589-S	ILMN_47903	IFITM5_PREDICTED	XM_215126.2	XM_215126.2		293617	62641589	XM_215126.2	Ifitm5_predicted	XP_215126.1	ILMN_1350793	0000520288	S	531	CTCAGAGGCCACCCTCTTTGTCCACCAAGTGTTTTCGATGGTGACCCACT					PREDICTED: Rattus norvegicus interferon induced transmembrane protein 5 (predicted) (Ifitm5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928691-S	ILMN_278738	IL1B	NM_031512.1	NM_031512.1		24494	13928691	NM_031512.1	Il1b	NP_113700.1	ILMN_1358370	0001990148	S	948	GGCAGTCTCCAGGGGAAGCCTTTGTCCTCTGCCAAGTCAGGTCTCTCAGA	3	-	116964758-116964807	3q36	Rattus norvegicus interleukin 1 beta (Il1b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEP]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual [goid 2439] [evidence IEP]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IMP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]; Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47834338-S	ILMN_282650	OLR1737	NM_001001422.1	NM_001001422.1		405349	47834338	NM_001001422.1	Olr1737	NP_001001422.1	ILMN_1365792	0002350446	S	844	CCTGCTCTCAATCCACTCATCTACACCTTGAGAAACAAGGAAGTGAGGAG	20	+	1382220-1382269	20p12	Rattus norvegicus olfactory receptor 1737 (Olr1737), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1737; Or13	Olr1737; Or13
Rattus norvegicus	RefSeq	GI_62665862-S	ILMN_69460	LOC499422	XM_574740.1	XM_574740.1		499422	62665862	XM_574740.1	LOC499422	XP_574740.1	ILMN_1356650	0007100176	S	890	GCAGCAGGGCCATGTGGCAGAAGATGATGTTCCTTGCTGGCTGCAAAATC				20p12	PREDICTED: Rattus norvegicus similar to Glutathione S-transferase, theta 3 (LOC499422), mRNA.					
Rattus norvegicus	RefSeq	GI_62639141-S	ILMN_274053	RGD1565787_PREDICTED	XM_001076633.1	XM_001076633.1		308429	109461411	XM_001076633.1	RGD1565787_predicted	XP_001076633.1	ILMN_1358959	0006110286	S	748	CTGGCAGGGGAGAGTGAAGAACCAAGAAGTGTGTGATTTGAGGAGCCCTG				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810065E05 (predicted) (RGD1565787_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138744-S	ILMN_268710	DEAR	NM_001004448.1	NM_001004448.1		446170	52138744	NM_001004448.1	Dear	NP_001004448.1	ILMN_1354932	0003870138	S	2935	GAGCTCATCTAAGGCCAGCAACTTCTCTGGTCCACTCCAGCTCTACCAAA	2	-	176736907-176736956	2q34	Rattus norvegicus dual endothelin 1, angiotensin II receptor (Dear), mRNA.		The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IMP]; Combining with endothelin to initiate a change in cell activity [goid 4962] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62641922	ILMN_279698	RFK	NM_001014106.1	NM_001014106.1		499328	62078944	NM_001014106.1	Rfk	NP_001014128.1	ILMN_1649985	0000130593	S	1807	CTGAATTGGCTTGAGTTGCCTATGCTGGCAGAAGGTTGACATTGGGCGAC	1	+	220931655-220931704	1q43	Rattus norvegicus riboflavin kinase (Rfk), mRNA.		The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) [goid 9231] [evidence IEA]	Catalysis of the reaction: ATP + riboflavin = ADP + FMN [goid 8531] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758013-S	ILMN_276624	HPX	NM_053318.1	NM_053318.1		58917	16758013	NM_053318.1	Hpx	NP_445770.1	ILMN_1363859	0003870070	S	1210	GCCCCATGAGAAAGTTGATGGTGCCCTGTGTTTGGAAAAGTCCCTTGGTC	1	-	163319733-163319782	1q33	Rattus norvegicus hemopexin (Hpx), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The chemical reactions and pathways involving hemoglobin, including its uptake and utilization [goid 20027] [evidence ISS]; The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 42168] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hpxn	Hpxn
Rattus norvegicus	RefSeq	GI_31581535-A	ILMN_60676	SQSTM1	NM_175843.3	NM_175843.3		113894	78185889	NM_175843.3	Sqstm1	NP_787037.2	ILMN_1376894	0000870717	A	505	TGCACAGGGAGCACAGCAAGCTCATCTTTCCCAACCCCTTTGGCCACCTC	10	-	35759877-35759926	10q22	Rattus norvegicus sequestosome 1 (Sqstm1), transcript variant 1, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]	Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9177193] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ZIP; ZIP3; Osi	ZIP; ZIP3; Osi
Rattus norvegicus	RefSeq	GI_31581535-I	ILMN_60676	SQSTM1	NM_175843.3	NM_175843.3		113894	78185889	NM_175843.3	Sqstm1	NP_787037.2	ILMN_1376089	0005910717	I	1276	CCAGGCTCCTACAGACCAAGAATTATGACATCGGGGCTGCTCTGGACACG	10	-	35751932-35751936:35751937-35751981	10q22	Rattus norvegicus sequestosome 1 (Sqstm1), transcript variant 1, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]	Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9177193] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ZIP; ZIP3; Osi	ZIP; ZIP3; Osi
Rattus norvegicus	RefSeq	GI_62654620-S	ILMN_66972	LOC501087	XM_576501.1	XM_576501.1		501087	62654620	XM_576501.1	LOC501087	XP_576501.1	ILMN_1366649	0002680253	S	937	AGACACAGAAGGAACACTCGTTCAGAGCCTGCCCCTCATGTGGCCCATAC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501087), mRNA.					
Rattus norvegicus	RefSeq	GI_62662575-S	ILMN_266701	RGD1560014_PREDICTED	XM_001072319.1	XM_001072319.1		306409	109514244	XM_001072319.1	RGD1560014_predicted	XP_001072319.1	ILMN_1355993	0006650113	S	4921	GGATCCCTTGCTGGATTAGACCAGGACAATAGGATACATCCAAGGGATGC				16p12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20035 (predicted) (RGD1560014_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578072	ILMN_269269	OLR61	NM_001001022.1	NM_001001022.1		405906	47578072	NM_001001022.1	Olr61	NP_001001022.1	ILMN_1360092	0005690092	S	474	CACTCTGTCACTTTTCCCAGGGCCCTTCTTGCTGAAACGACTGAACTACT	1	+	160635197-160635246	1q32	Rattus norvegicus olfactory receptor 61 (Olr61), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr61	Olr61
Rattus norvegicus	RefSeq	GI_62656606-S	ILMN_58497	KSR_PREDICTED	XM_340852.2	XM_340852.2		360573	62656606	XM_340852.2	Ksr_predicted	XP_340853.2	ILMN_1371154	0006900168	S	6123	CGCTGGCGGAGTCGCTACTATGGGAAAGGACGCTATGGTCACCCTGACTT				10q25	PREDICTED: Rattus norvegicus kinase suppressor of ras (predicted) (Ksr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662942-S	ILMN_58871	RASA3	XM_225020.3	XM_225020.3		29372	62662942	XM_225020.3	Rasa3	XP_225020.3	ILMN_1353437	0003990014	S	5075	CAGGATGTCATGGAAACCCATCACTAGGCTGAGGGGCAGCACTGAGCACC				16q12.5	PREDICTED: Rattus norvegicus RAS p21 protein activator 3 (Rasa3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254724-S	ILMN_273025	ATF5	NM_172336.2	NM_172336.2		282840	40254724	NM_172336.2	Atf5	NP_758839.2	ILMN_1359736	0005490300	S	1637	GTGTTTTGTGAAGGTGTGGGGGAAGGGTTGCATCTGGTGGGGGCTGATCC	1	-	95284126-95284175	1q22	Rattus norvegicus activating transcription factor 5 (Atf5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50768] [evidence IDA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576366-S	ILMN_292811	OLR1548	NM_001001108.1	NM_001001108.1		406004	47576366	NM_001001108.1	Olr1548	NP_001001108.1	ILMN_1362199	0004730300	S	520	CACTTTTACTGTGACATCATTCCATTGCTAAAGATTTCCTGCACTGACTC	11	+	42178741-42178790	11q12	Rattus norvegicus olfactory receptor 1548 (Olr1548), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1548	Olr1548
Rattus norvegicus	RefSeq	GI_62643571-S	ILMN_53990	LOC499637	XM_579992.1	XM_579992.1		499637	62643571	XM_579992.1	LOC499637	XP_579992.1	ILMN_1356253	0002970110	S	8	GATCTACCTGTGGCCTGCACGCAGCATAGGAGAGCTCACTGAGGACTCAG					PREDICTED: Rattus norvegicus LOC499637 (LOC499637), mRNA.					
Rattus norvegicus	RefSeq	GI_62646640-I	ILMN_51626	SMARCD3_PREDICTED	XM_575322.1	XM_575322.1		296732	62646640	XM_575322.1	Smarcd3_predicted	XP_575322.1	ILMN_1375383	0006770647	S	414	GGACGAAGTTGCCGGAGGGGCGCGCAAAGCCACGAAAAGCAAACTTTTTG				4q11	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) (Smarcd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665342-S	ILMN_67104	LOC307901	XM_226525.3	XM_226525.3		307901	62665342	XM_226525.3	LOC307901	XP_226525.3	ILMN_1364051	0004780402	S	1862	TGAGCCCTACCGGGGCCTGACTGAGGAGGGGACATCACTATGCACTGTAA				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632415K11 (predicted) (LOC307901), mRNA.					
Rattus norvegicus	RefSeq	GI_27545365-S	ILMN_293838	NP4	NM_173299.1	NM_173299.1		286958	27545365	NM_173299.1	Np4	NP_775421.1	ILMN_1357957	0007100446	S	126	GCAGAGTCTCCCCAAGAAAGAGCTAAGGCGGCTCCAGACCAGGATATGGT	16	-	75285525-75285574	16q12.5	Rattus norvegicus defensin NP-4 precursor (Np4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence TAS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence IEA]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence IEA]		NP-4	NP-4
Rattus norvegicus	RefSeq	GI_62655827-S	ILMN_291574	TRAF7_PREDICTED	XM_001055375.1	XM_001055375.1		360491	109490318	XM_001055375.1	Traf7_predicted	XP_001055375.1	ILMN_1371994	0001580563	S	1609	CTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCC				10q12	PREDICTED: Rattus norvegicus Tnf receptor-associated factor 7 (predicted) (Traf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655016-S	ILMN_269280	COL5A2	XM_001061982.1	XM_001061982.1		85250	109487074	XM_001061982.1	Col5a2	XP_001061982.1	ILMN_1360855	0002940168	S	4770	CAGAACACAGAATGTGGCCCGCTTGCCCATCATAGATATCGGTCCTGTGG				9q22	PREDICTED: Rattus norvegicus procollagen, type V, alpha 2 (Col5a2), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils [goid 5588] [evidence TAS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642294-S	ILMN_57567	ANKRD22_PREDICTED	XM_220065.4	XM_220065.4		294093	109460061	XM_220065.4	Ankrd22_predicted	XP_220065.4	ILMN_1372477	0007100427	S	662	TGCTCCTGGCAGCCCGTGCAGACCCCACGATAAAGAACAAGCATGGTGAG	1	-	237986283-237986292:237989742-237989781	1q52	PREDICTED: Rattus norvegicus ankyrin repeat domain 22 (predicted) (Ankrd22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660508-S	ILMN_55123	LOC498370	XM_573605.1	XM_573605.1		498370	62660508	XM_573605.1	LOC498370	XP_573605.1	ILMN_1359922	0001340129	S	21	GCTGCTCAGGCTATTTCGGGTGAAAGTGGAGATCAAGGAGAGACCACACC				14p11	PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC498370), mRNA.					
Rattus norvegicus	RefSeq	GI_62661429-S	ILMN_64303	LOC290195	XM_214174.3	XM_214174.3		290195	62661429	XM_214174.3	LOC290195	XP_214174.1	ILMN_1358665	0004010279	S	423	GGCCCCTGAGGCAGGACTAGAGCACTTGCCAAAATGAGAGACTCGAGGGT					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 2 (LOC290195), mRNA.					
Rattus norvegicus	RefSeq	GI_8393928-S	ILMN_289755	PDE3B	NM_017229.1	NM_017229.1		29516	8393928	NM_017229.1	Pde3b	NP_058925.1	ILMN_1363159	0004610603	S	3848	TGGGGGTGGGATGGGGCCAGAAACAAACTTCTATGCTTAATCCAAAAAGG	1	+	172576566-172576615	1q34	Rattus norvegicus phosphodiesterase 3B, cGMP-inhibited (Pde3b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence IEA]	Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641244-S	ILMN_268342	DCTN5	NM_001037778.1	NM_001037778.1		308961	83649768	NM_001037778.1	Dctn5	NP_001032867.1	ILMN_1360824	0004280279	S	633	CTCCAAGATGGACCTGGAGATGAGAAGGGCAGTTGGTGACGACAGAGCTG	1	+	180968540-180968589	1q36	Rattus norvegicus dynactin 5 (Dctn5), mRNA.			Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RGD1305654; MGC112788	RGD1305654; MGC112788
Rattus norvegicus	RefSeq	GI_62646424-S	ILMN_278449	NCOA3	XM_001072953.1	XM_001072953.1		84584	109471350	XM_001072953.1	Ncoa3	XP_001072953.1	ILMN_1349092	0002360239	S	4020	GCAGGCTCAGCAATGCCACAAGCCCCTCCACAACAGTTTCCGTATGCGAC				3q42	PREDICTED: Rattus norvegicus nuclear receptor coactivator 3 (Ncoa3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33145] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the activity of an estrogen receptor signaling pathway [goid 33148] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IDA]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an estrogen receptor [goid 30331] [evidence IPI];  [goid 30374] [evidence IDA]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662689-S	ILMN_52825	ZFP42_PREDICTED	XM_224882.2	XM_224882.2		290765	62662689	XM_224882.2	Zfp42_predicted	XP_224882.1	ILMN_1353364	0003840242	S	1130	GCTGAGGGATAAAACTGCCCTGAGGAAACACATGCTGGTCCACGGTCCCC					PREDICTED: Rattus norvegicus zinc finger protein 42 (predicted) (Zfp42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576852-S	ILMN_265684	OLR818	NM_001000844.1	NM_001000844.1		405133	47576852	NM_001000844.1	Olr818	NP_001000844.1	ILMN_1350486	0002570288	S	642	GGTCTCTTATGCATGTATCCTTGGTGCTATACTGAGGATCCAGTCAGGGG	4	+	70920184-70920233	4q23	Rattus norvegicus olfactory receptor 818 (Olr818), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr818	Olr818
Rattus norvegicus	RefSeq	GI_56961636-S	ILMN_266208	STE2	XM_001074217.1	XM_001074217.1		360268	109500439	XM_001074217.1	ste2	XP_001074217.1	ILMN_1365787	0004280338	S	748	GAGGAGCACTACCAGCGGCATATGAAGGACTGCCCTGTGAAGTTTAGAGC				14p21	PREDICTED: Rattus norvegicus estrogen sulfotransferase (ste2), mRNA.		The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 8210] [evidence IEA]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643973-S	ILMN_51714	THH_PREDICTED	XM_227373.4	XM_227373.4		310588	109465160	XM_227373.4	Thh_predicted	XP_227373.4	ILMN_1359006	0006520563	S	4498	CAACTGCGGAGGGAGAAGCGAGATGGTCAGTACCCGGCTGAGGAGCAATT	2	+	186533595-186533644	2q34	PREDICTED: Rattus norvegicus trichohyalin (predicted) (Thh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560033-S	ILMN_272034	ABCB9	NM_022238.1	NM_022238.1		63886	11560033	NM_022238.1	Abcb9	NP_071574.1	ILMN_1351742	0004560091	S	3228	TGCCCAGGGTCTGGCTTTGTCCTGGTTTAAGATTTTGGGAGAACTGGGTC	12	+	33656167-33656216	12q15	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 9 (Abcb9), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter [goid 43190] [evidence TAS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15833] [evidence IEA]; The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15197] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Tapl	Tapl
Rattus norvegicus	RefSeq	GI_62665488-S	ILMN_51293	LOC502208	XM_577668.1	XM_577668.1		502208	62665488	XM_577668.1	LOC502208	XP_577668.1	ILMN_1367503	0003290204	S	1370	AGCCCTGGCAGCTCTCTGCACCCCCAGCTCAGTAAGGGAGAGCCAAGATG				19q12	PREDICTED: Rattus norvegicus similar to Gene model 587 (LOC502208), mRNA.					
Rattus norvegicus	RefSeq	GI_62648256-S	ILMN_59986	DUSP16_PREDICTED	XM_232473.3	XM_232473.3		297682	62648256	XM_232473.3	Dusp16_predicted	XP_232473.3	ILMN_1373390	0004010025	S	923	GATGGTCCTGCAGACATGGGGAAGCCTGACGCACTCGTGTATAAAACCCG				4q43	PREDICTED: Rattus norvegicus dual specificity phosphatase 16 (predicted) (Dusp16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645068-S	ILMN_285171	GTDC1	NM_001024274.1	NM_001024274.1		362129	66730365	NM_001024274.1	Gtdc1	NP_001019445.1	ILMN_1370882	0002470064	S	1740	TTGCCAGGTTATCATCGGAGCCTTCTTGTGTCCTCAAAGGGCCACGGGGC	3	-	25042796-25042845	3q12	Rattus norvegicus glycosyltransferase-like domain containing 1 (Gtdc1), mRNA.		The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090462-S	ILMN_300903	GORASP2	NM_001007720.1	NM_001007720.1		113961	56090462	NM_001007720.1	Gorasp2	NP_001007721.1	ILMN_1365777	0000380746	I	2086	AGCTACTTCATGGTATGGCGACCCTGGGAGAGCGAAGACGGCAATAAACT	3	+	52923688-52923737	3q21	Rattus norvegicus golgi reassembly stacking protein 2 (Gorasp2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93180; Grs2; GRASP55	MGC93180; Grs2; GRASP55
Rattus norvegicus	RefSeq	GI_62645098	ILMN_300903	GORASP2	NM_001007720.1	NM_001007720.1		113961	56090462	NM_001007720.1	Gorasp2	NP_001007721.1	ILMN_1649928	0002360278	A	1679	GTCTTTGGAAGAGACGGCGGGGGCCTGCTAGAATCCCTGTACCACTGCTA	3	+	52923281-52923330	3q21	Rattus norvegicus golgi reassembly stacking protein 2 (Gorasp2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93180; Grs2; GRASP55	MGC93180; Grs2; GRASP55
Rattus norvegicus	RefSeq	GI_62655994-S	ILMN_65868	HAVCR2	XM_343881.3	XM_343881.3		363578	109487989	XM_343881.3	Havcr2	XP_343882.3	ILMN_1356543	0002810044	S	1398	CACCAGGAGGGTTGGTGAATGCAGGAGCAGGCAGGATTCGGTCTGAGGAA	10	+	31608845-31608894	10q21	PREDICTED: Rattus norvegicus hepatitis A virus cellular receptor 2 (Havcr2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62655993-S	ILMN_65868	HAVCR2	XM_343881.3	XM_343881.3		363578	109487989	XM_343881.3	Havcr2	XP_343882.3	ILMN_1359061	0001170180	S	525	GAGTCATGATGGAGGTCCAGAAACGCCAGCGCCTTGAAACAGCTGAGAGG	10	+	31560730-31560779	10q21	PREDICTED: Rattus norvegicus hepatitis A virus cellular receptor 2 (Havcr2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_8393596-S	ILMN_272224	IL6RA	NM_017020.1	NM_017020.1		24499	8393596	NM_017020.1	Il6ra	NP_058716.1	ILMN_1349175	0004050438	S	4222	CCTCCAGCCTGTAGTCCTAGCATAGTCGGGTGCCAGTTCCAGGAAGTTTC	2	-	182078306-182078355	2q34	Rattus norvegicus interleukin 6 receptor, alpha (Il6ra), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]; Combining with interleukin-6 to initiate a change in cell activity [goid 4915] [evidence IMP]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	Il6r; IL6R1	Il6r; IL6R1
Rattus norvegicus	RefSeq	GI_62654367-S	ILMN_53579	RGD1562548_PREDICTED	XM_217270.4	XM_217270.4		301027	109483993	XM_217270.4	RGD1562548_predicted	XP_217270.4	ILMN_1359003	0000580142	S	948	CACCGTGGTGAACCAGACTGCTTGTTTGCATCCAGTGGTCTTCCTCATCT	8	+	115181820-115181869	8q32	PREDICTED: Rattus norvegicus similar to testis serine protease2 (predicted) (RGD1562548_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078910-S	ILMN_298472	TBCEL	NM_001014089.1	NM_001014089.1		315591	62078910	NM_001014089.1	Tbcel	NP_001014111.1	ILMN_1369830	0006220736	S	1215	TTGGCAGAAGTGGACCTGAGACCCCAGAGCAGTGCGAAAGTCGAAGTCCA	8	-	45403807-45403856	8q22	Rattus norvegicus tubulin folding cofactor E-like (Tbcel), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1308880	RGD1308880
Rattus norvegicus	RefSeq	GI_62653281-S	ILMN_269428	LOC687016	XM_001076743.1	XM_001076743.1		687016	109484334	XM_001076743.1	LOC687016	XP_001076743.1	ILMN_1359242	0001450040	S	438	TCTTGGTTCAGCTGTATCACGTTCTCCCAGAAGTACTGCAGTGGCCTCAC					PREDICTED: Rattus norvegicus similar to olfactory receptor 873 (LOC687016), mRNA.					
Rattus norvegicus	RefSeq	GI_62642654-S	ILMN_54611	RGD1561830_PREDICTED	XM_226608.4	XM_226608.4		309925	109464192	XM_226608.4	RGD1561830_predicted	XP_226608.4	ILMN_1371192	0006590692	S	894	AGTGTCCAAGAAAATGTGCCAAATAGAGAAGCGGATCTGGGGGGAACTAG	2	-	3329255-3329304	2q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25333 (predicted) (RGD1561830_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41281623-S	ILMN_267779	PCDHA8	NM_053942.1	NM_053942.1		116781	41281623	NM_053942.1	Pcdha8	NP_446394.1	ILMN_1352332	0006660497	S	2318	CCAGTCTTCCACCGCGTCCAGTATCAGAGGTCATTGGGGAAGGGCAAGAT	18	+	29712277-29712326	18p11	Rattus norvegicus protocadherin alpha 8 (Pcdha8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641619-I	ILMN_49582	RPLP2	XM_215116.3	XM_215116.3		140662	62641619	XM_215116.3	Rplp2	XP_215116.2	ILMN_1375860	0002470253	S	102	CAAGGCAAATTTCTTGCTTCCGGCGCACCCTTATCGTCAATGGGAGGCGC				1q41	PREDICTED: Rattus norvegicus ribosomal protein, large P2 (Rplp2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56118952-S	ILMN_294348	LIMK2	NM_024135.2	NM_024135.2		29524	56118952	NM_024135.2	Limk2	NP_077049.2	ILMN_1355049	0005390692	S	3326	GAACTCCCGACATCAGTGTGGTTCAGCGTCCTGCGGCGAATTATGCACGC	14	-	83969361-83969410	14q21	Rattus norvegicus LIM motif-containing protein kinase 2 (Limk2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Limk2b; Link2	Limk2b; Link2
Rattus norvegicus	RefSeq	GI_27681102-S	ILMN_267598	RGD1562699_PREDICTED	XM_238022.1	XM_238022.1		291558	27681102	XM_238022.1	RGD1562699_predicted	XP_238022.1	ILMN_1366967	0000110167	S	173	CACGATTACACGTGCAGATGCATGCTCGGGCTGGTTGAACACGGGAAGGA	18	-	60542109-60542135:60542222-60542244	18q12.1	PREDICTED: Rattus norvegicus RGD1562699 (predicted) (RGD1562699_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27545431-S	ILMN_298280	OLR1361	NM_173333.1	NM_173333.1		287000	27545431	NM_173333.1	Olr1361	NP_775455.1	ILMN_1349246	0006650309	S	869	ATAGCCTGAGGAACAGCGACATGAAAGCAGCTTTAAGGAAAGTGCTCGCC	10	+	12200034-12200083	10q12	Rattus norvegicus olfactory receptor 1361 (Olr1361), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649904-S	ILMN_53392	CDA_PREDICTED	XM_342955.3	XM_342955.3		362638	109475705	XM_342955.3	Cda_predicted	XP_342956.1	ILMN_1365916	0001740014	S	652	AAGGTGCCACTTACCTGGGCCAAAGCCCTCACCCTCCTGGGGTCTCAGAA	5	-	157117516-157117565	5q36	PREDICTED: Rattus norvegicus cytidine deaminase (predicted) (Cda_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656745-S	ILMN_262704	BZRAP1	XM_001081125.1	XM_001081125.1		287609	109491593	XM_001081125.1	Bzrap1	XP_001081125.1	ILMN_1349411	0006220253	S	5579	CCTCCAAGACCAAACTGGGGGAGTCGCAGGGCATAGCTGAGAAGAAGCAG				10q26	PREDICTED: Rattus norvegicus benzodiazapine receptor associated protein 1 (Bzrap1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with the peripheral benzodiazepine receptor (PBR) [goid 30156] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_8393089-S	ILMN_274545	CEBPE	NM_017095.1	NM_017095.1		25410	8393089	NM_017095.1	Cebpe	NP_058791.1	ILMN_1356645	0000460520	S	566	CTGCTGGCCCCTCGCACAAGGGCAAGAAGGCAGTGAACAAAGATAGCCTG	15	-	32788176-32788225	15p13	Rattus norvegicus CCAAT/enhancer binding protein (C/EBP), epsilon (Cebpe), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence ISS]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEP]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42089] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42089] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	C/EPBe; CRP1	C/EPBe; CRP1
Rattus norvegicus	RefSeq	GI_18426855-S	ILMN_264531	RUNX3	NM_130425.1	NM_130425.1		156726	18426855	NM_130425.1	Runx3	NP_569109.1	ILMN_1372259	0004760392	S	736	TTTGATCGCTCCTTCCCTACGCTGCAAAGCCTCACAGAGAGCCGCTTCCC	5	+	153972644-153972693	5q36	Rattus norvegicus runt-related transcription factor 3 (Runx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IEA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649007-A	ILMN_289719	ACTL7A	NM_001011973.1	NM_001011973.1		298017	58865513	NM_001011973.1	Actl7a	NP_001011973.1	ILMN_1376985	0005360093	S	1153	GCAGAAGGAACTGAGCAGCATGTGTCCCAACGACACCCCACAGGTAAATG	5	+	74651108-74651157	5q24	Rattus norvegicus actin-like 7a (Actl7a), mRNA.	The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47059016-S	ILMN_285580	HMMR	NM_012964.2	NM_012964.2		25460	47059016	NM_012964.2	Hmmr	NP_037096.2	ILMN_1350866	0006660746	S	2118	TGTGACCCTCAAGACTCCATTGAAAGAAGGCAACCCGAACTGCTGCTGAG				10q12	Rattus norvegicus hyaluronan mediated motility receptor (RHAMM) (Hmmr), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence NAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence TAS]	RHAMM	RHAMM
Rattus norvegicus	RefSeq	GI_27680061-S	ILMN_290329	RGD1565366_PREDICTED	XM_001054069.1	XM_001054069.1		293538	109463036	XM_001054069.1	RGD1565366_predicted	XP_001054069.1	ILMN_1357845	0001740739	S	736	TTGGTATTTCGGGACAGTTCGCTACTGCGAGTGCCGGTGCCACGCTCTCT				1q41	PREDICTED: Rattus norvegicus similar to Hmx2 protein (predicted) (RGD1565366_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645932-S	ILMN_277970	GAPDH	XM_001081305.1	XM_001081305.1		499896	109470888	XM_001081305.1	Gapdh	XP_001081305.1	ILMN_2039222	0001740681	S	848	TGTGAAGCAGGCATCTGAGGGTCTACTAAAGGGCATCCTGGGCTACACTG				3q36	PREDICTED: Rattus norvegicus glyceraldehyde 3-phosphate dehydrogenase (Gapdh), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence NAS]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34858813-S	ILMN_277970	GAPDH	XM_001081305.1	XM_001081305.1		499896	109470888	XM_001081305.1	Gapdh	XP_001081305.1	ILMN_1372773	0001400136	S	1221	GGGCCTGGGGAGCCCACCCTTCTCTCTTGAATAACATCAATAAAGTTCAC				3q36	PREDICTED: Rattus norvegicus glyceraldehyde 3-phosphate dehydrogenase (Gapdh), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence NAS]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576618-S	ILMN_295647	OLR1678	NM_001000893.1	NM_001000893.1		405194	47576618	NM_001000893.1	Olr1678	NP_001000893.1	ILMN_1369343	0002450563	S	407	TGAAGCAGCGTAACTGTTTCCTGTTAGTGTCCATTGTGTGGCTGACTGGA	20	-	248301-248350	20p12	Rattus norvegicus olfactory receptor 1678 (Olr1678), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1678	Olr1678
Rattus norvegicus	RefSeq	GI_27678581-S	ILMN_290115	RGD1563293_PREDICTED	XM_001059251.1	XM_001059251.1		289269	109499112	XM_001059251.1	RGD1563293_predicted	XP_001059251.1	ILMN_1361119	0001340142	S	1140	GGACTGCTGCCCCATCAGGACCCATCTGAACACAGAGGAGGAGTGGTCGA				13q25	PREDICTED: Rattus norvegicus similar to Beclin 1 (Coiled-coil myosin-like BCL2-interacting protein) (predicted) (RGD1563293_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577600-S	ILMN_271406	OLR660	NM_001000635.1	NM_001000635.1		404828	47577600	NM_001000635.1	Olr660	NP_001000635.1	ILMN_1374360	0000070086	S	665	CACTACGAAACCACAGTGCAGAAGGGAGAAAAAAGGCACTTTCTACCTGC	3	+	72917240-72917289	3q24	Rattus norvegicus olfactory receptor 660 (Olr660), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr660	Olr660
Rattus norvegicus	RefSeq	GI_62642732-S	ILMN_58381	RGD1564784_PREDICTED	XM_574833.2	XM_574833.2		499508	109464211	XM_574833.2	RGD1564784_predicted	XP_574833.2	ILMN_1372143	0003710132	S	1980	GAGTCGTCCACCAGGAACAAGCAGTTCACAGGGACCGAGTAAGCCACATG	2	-	22757396-22757445	2q12	PREDICTED: Rattus norvegicus similar to Zinc finger, FYVE domain containing 16 (predicted) (RGD1564784_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642730-S	ILMN_58381	RGD1564784_PREDICTED	XM_574833.2	XM_574833.2		499508	109464211	XM_574833.2	RGD1564784_predicted	XP_574833.2	ILMN_1369149	0006650132	S	5414	TCAGATGACGACAGGCCAGACGACCCGTGAAGTAGTCATTGTGTGGCAAT	2	-	22725721-22725770	2q12	PREDICTED: Rattus norvegicus similar to Zinc finger, FYVE domain containing 16 (predicted) (RGD1564784_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663740-S	ILMN_65971	ACTN2_PREDICTED	XM_214499.4	XM_214499.4		291245	109505062	XM_214499.4	Actn2_predicted	XP_214499.4	ILMN_1370908	0004590239	S	2828	AGGAACTTCGTCGAGAGCTGCCTCCGGATCAGGCCCAGTACTGCATCAAG	17	+	68773050-68773099	17q12.1	PREDICTED: Rattus norvegicus actinin alpha 2 (predicted) (Actn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653376-S	ILMN_276208	RGD1564209_PREDICTED	XM_001053896.1	XM_001053896.1		367046	109484415	XM_001053896.1	RGD1564209_predicted	XP_001053896.1	ILMN_1373931	0004540056	S	1649	TCCTGATTAAAGAGGTCAAGACTGGGGAGGCAAGGGCAGTGGACAGACCT				8q13	PREDICTED: Rattus norvegicus similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (ACAD-8) (predicted) (RGD1564209_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654564-S	ILMN_276208	RGD1564209_PREDICTED	XM_001053896.1	XM_001053896.1		367046	109484415	XM_001053896.1	RGD1564209_predicted	XP_001053896.1	ILMN_1362440	0001230113	S	664	ATGTGGTCATGTGCAGAACTGGTGGATCAGGCCCCAAAGGTATCTCCTGC				8q13	PREDICTED: Rattus norvegicus similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (ACAD-8) (predicted) (RGD1564209_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929109-S	ILMN_281249	ATP6AP1	NM_031785.1	NM_031785.1		83615	13929109	NM_031785.1	Atp6ap1	NP_113973.1	ILMN_1359644	0006220348	S	1853	GGCGGGTGGGGGTTAAGAATGAGCGGTACACTGGGGTTTATTTCTGTGAC	X	-	160306526-160306575	Xq37	Rattus norvegicus ATPase, H+ transporting, lysosomal accessory protein 1 (Atp6ap1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol [goid 5773] [evidence IEA]; The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell [goid 5774] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IMP]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	C7-1; Atp6s1	C7-1; Atp6s1
Rattus norvegicus	RefSeq	GI_62649921-S	ILMN_289075	PQLC2_PREDICTED	XM_342958.2	XM_342958.2		362642	62649921	XM_342958.2	Pqlc2_predicted	XP_342959.2	ILMN_1372190	0002810390	S	1186	CAGACAGGTCTAGAGTTGGCACAGGTCTGGAGTTGGCGTGTGCTATGCCG	5	-	158087833-158087882	5q36	PREDICTED: Rattus norvegicus PQ loop repeat containing 2 (predicted) (Pqlc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649116-S	ILMN_299237	LOC683719	XM_001067187.1	XM_001067187.1		683719	109476658	XM_001067187.1	LOC683719	XP_001067187.1	ILMN_1364381	0005340136	S	2463	CATAGCCTGGCAAAATGTACTGCTCTTCCCTCTTCACAGCAACCGCAGGC					PREDICTED: Rattus norvegicus similar to RAS and EF hand domain containing (LOC683719), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393226-S	ILMN_287043	CYP19A1	NM_017085.1	NM_017085.1		25147	8393226	NM_017085.1	Cyp19a1	NP_058781.1	ILMN_1365779	0004730519	S	1181	CGCAGAGCCCTGGAGGATGACGTGATTGACGGCTACCCGGTTAAAAAGGG	8	-	57652061-57652110	8q24	Rattus norvegicus cytochrome P450, family 19, subfamily a, polypeptide 1 (Cyp19a1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 6703] [evidence TAS]; The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 6703] [evidence TAS]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IDA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IDA]	Cyp19; p450arom; Aromatase	Cyp19; p450arom; Aromatase
Rattus norvegicus	RefSeq	GI_62653019-S	ILMN_52888	CCNT1_PREDICTED	XM_235633.4	XM_235633.4		315291	109481246	XM_235633.4	Ccnt1_predicted	XP_235633.3	ILMN_1369043	0001780441	S	2230	AGATCTGGCAACACAGACAAACCTCGGCCACCACCCCTCCCGTCAGAGCC	7	-	137288665-137288714	7q36	PREDICTED: Rattus norvegicus cyclin T1 (predicted) (Ccnt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667503-S	ILMN_65982	LOC309349	XM_219848.2	XM_219848.2		309349	62667503	XM_219848.2	LOC309349	XP_219848.1	ILMN_1357725	0004060253	S	4118	TACCAAGTATAGGCCTGGGCATCGCTACTTCGTGCTAAAGTGCCTTCGCA				Xq37	PREDICTED: Rattus norvegicus similar to neuronal transmembrane protein Slitrk2 (LOC309349), mRNA.					
Rattus norvegicus	RefSeq	GI_62653735-S	ILMN_68051	LOC300742	XM_236289.3	XM_236289.3		300742	62653735	XM_236289.3	LOC300742	XP_236289.3	ILMN_1373336	0002120707	S	2042	GGGACCATCTGGCTGTTGGGGGAAAAGGGAGATCCTGCACATTCCGAACC					PREDICTED: Rattus norvegicus similar to Ulk3 protein (LOC300742), mRNA.					
Rattus norvegicus	RefSeq	GI_34859033-S	ILMN_265635	XYLT1	XM_001078643.1	XM_001078643.1		64133	109462738	XM_001078643.1	Xylt1	XP_001078643.1	ILMN_1374862	0003290487	S	2881	GGGACTGATACAGCCTGAACCCTGGCCTCTGATCTTATATGGGGGAGGGG				1q35	PREDICTED: Rattus norvegicus xylosyltransferase 1 (Xylt1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxyl group of an acceptor protein substrate [goid 30158] [evidence IEA]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638470-S	ILMN_51043	MTHFD1L_PREDICTED	XM_341750.3	XM_341750.3		361472	109457708	XM_341750.3	Mthfd1l_predicted	XP_341751.3	ILMN_1364841	0003140736	S	2984	GAGCACAATGCCAGGTCTGCCCACCCGACCCTGCTTTTACGATATAGACC	1	+	34873836-34873885	1p11	PREDICTED: Rattus norvegicus methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (predicted) (Mthfd1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639396-S	ILMN_53111	LOC499129	XM_574422.2	XM_574422.2		499129	109458593	XM_574422.2	LOC499129	XP_574422.1	ILMN_2039030	0002760408	S	2420	CCGTGTTTGTGTGAACACACCGCGTTCCCGGTTCATGCCATAAAGGACGC	1	-	87117401-87117450	1q21	PREDICTED: Rattus norvegicus similar to potassium channel tetramerisation domain containing 15 (LOC499129), mRNA.					
Rattus norvegicus	RefSeq	GI_27695600-S	ILMN_50384	RGD1562438_PREDICTED	XM_223399.4	XM_223399.4		305338	109499678	XM_223399.4	RGD1562438_predicted	XP_223399.4	ILMN_2040908	0000520564	S	1811	TCTGGTGTGAGCCTAATGCAGCCAATGTGTCGGAAGCTGTCCAGGCTGCC	14	+	44506894-44506943	14p11	PREDICTED: Rattus norvegicus similar to amyloid beta (A4) precursor protein-binding, family B, member 2 (predicted) (RGD1562438_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660482-S	ILMN_50384	RGD1562438_PREDICTED	XM_223399.4	XM_223399.4		305338	109499678	XM_223399.4	RGD1562438_predicted	XP_223399.4	ILMN_2038887	0002480753	S	1843	GAAGCTGTCCAGGCTGCCTGCATGCTGCGATATCAGAAGTGCTTGGTAGC	14	+	44506926-44506949:44522549-44522574	14p11	PREDICTED: Rattus norvegicus similar to amyloid beta (A4) precursor protein-binding, family B, member 2 (predicted) (RGD1562438_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666329	ILMN_69201	LOC365604	XM_345124.2	XM_345124.2		365604	62666329	XM_345124.2	LOC365604	XP_345125.2	ILMN_1649788	0004210181	S	1012	TCCACAGAGAGCAGCCGACCGGGGGTTTTAACTACTGCTGAGGAACTCTG					PREDICTED: Rattus norvegicus similar to FLJ16517 protein (LOC365604), mRNA.					
Rattus norvegicus	RefSeq	GI_6981449-S	ILMN_268949	ABCD3	NM_012804.1	NM_012804.1		25270	6981449	NM_012804.1	Abcd3	NP_036936.1	ILMN_1357729	0002100524	S	3121	GTCGTCGTGAATCAGTTTGCTTGAGTGGGCTCGGAATGGGCCTTATCACG	2	-	218396069-218396118	2q41	Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 3 (Abcd3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence NAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IMP]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of long-chain fatty acids into a peroxisome [goid 15910] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence TAS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]	Pxmp1; PMP70	Pxmp1; PMP70
Rattus norvegicus	RefSeq	GI_62639703-S	ILMN_63011	LOC499148	XM_574443.1	XM_574443.1		499148	62639703	XM_574443.1	LOC499148	XP_574443.1	ILMN_1360493	0001740440	S	1082	AGGAAGAAGGGGATGCATTGTCGCCCTGTGTGGTCGCTTCTGTCACCTCC					PREDICTED: Rattus norvegicus similar to flt3 ligand (LOC499148), mRNA.					
Rattus norvegicus	RefSeq	GI_62645449-S	ILMN_264875	RGD1309730_PREDICTED	XM_001071147.1	XM_001071147.1		295952	109470274	XM_001071147.1	RGD1309730_predicted	XP_001071147.1	ILMN_1354640	0006450193	S	612	CTGAGGGGAAGCCAACGCCCGCTGTGGGAAGAACTCAGACGCAAACTGAA				3q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230118H07 (predicted), transcript variant 2 (RGD1309730_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655135-S	ILMN_67956	LOC501151	XM_576576.1	XM_576576.1		501151	62655135	XM_576576.1	LOC501151	XP_576576.1	ILMN_1368209	0005670711	S	903	TCAAAATTACCGAAGGTCTAGAACAATGCTTCTTAGCAAAGGGGGTTTTG					PREDICTED: Rattus norvegicus similar to PRO1477 (LOC501151), mRNA.					
Rattus norvegicus	RefSeq	GI_62666925-S	ILMN_300895	RGD1566100_PREDICTED	XR_008244.1	XR_008244.1		501577	109511976	XR_008244.1	RGD1566100_predicted		ILMN_1350778	0001570692	S	933	AGCGGCTGCCAAGCCTAAGGCCAAGGACACTTTCGCTCACCTACCCAAGA				Xq31	PREDICTED: Rattus norvegicus similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) (predicted) (RGD1566100_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647134-S	ILMN_274091	TAS2R40	NM_001025150.1	NM_001025150.1		500101	68342014	NM_001025150.1	Tas2r40	NP_001020321.1	ILMN_1370297	0003390333	S	630	GGCAGCCATTCTGCTCATCACCTCACTCAAGAGGCACACCCTGAACATGG	4	+	69967593-69967642	4q23	Rattus norvegicus taste receptor, type 2, member 40 (Tas2r40), mRNA.					
Rattus norvegicus	RefSeq	GI_54312051-S	ILMN_263401	KIFC1	NM_001005878.1	NM_001005878.1		294286	54312051	NM_001005878.1	Kifc1	NP_001005878.1	ILMN_1355582	0004210735	S	2147	GCCTGGCTCCTGTGCAAGCGGGTGTGCGTGTCTGTTTTGTGTATATGTAT				20p12	Rattus norvegicus kinesin family member C1 (Kifc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94918	MGC94918
Rattus norvegicus	RefSeq	GI_62644194-S	ILMN_273092	WDR47	XM_001081957.1	XM_001081957.1		310785	109465450	XM_001081957.1	Wdr47	XP_001081957.1	ILMN_1356955	0001190706	S	1822	GAGGTGCCAGTACTCAACCAACAATGCCTCGGGAGCAAAAACAGTGGGTC	2	+	204216177-204216226	2q34	PREDICTED: Rattus norvegicus WD repeat domain 47 (Wdr47), mRNA.					
Rattus norvegicus	RefSeq	GI_18266705-S	ILMN_271711	IKBKAP	NM_080899.1	NM_080899.1		140934	18266705	NM_080899.1	Ikbkap	NP_543175.1	ILMN_1374637	0000460402	S	4359	GCAACCGAGGAGGCTGAGGCAGAAACACTGATGGAAGTTCAAGACCAGTG	5	-	74657515-74657564	5q24	Rattus norvegicus inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein (Ikbkap), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation [goid 8023] [evidence ISS]; Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA, D, E, F, and H which are required for promoter recognition, and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA [goid 16591] [evidence IEA]; Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA, D, E, F, and H which are required for promoter recognition, and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA [goid 16591] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Modulation of the activity of the enzyme phosphorylase kinase [goid 8607] [evidence ISS]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651727-S	ILMN_265693	AP3D1	XM_001076208.1	XM_001076208.1		314633	109481554	XM_001076208.1	Ap3d1	XP_001076208.1	ILMN_1360571	0001740541	S	4516	CAAGGTGAAGAGACCCCATCCTGGACACTTCCTATAACTGGGTAGCTGCG				7q11	PREDICTED: Rattus norvegicus adaptor-related protein complex 3, delta 1 subunit (Ap3d1), mRNA.		The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family [goid 48007] [evidence IEA]; The process by which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family [goid 48007] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation [goid 51138] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation [goid 51138] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62653413-S	ILMN_51934	LOC503193	XM_578716.1	XM_578716.1		503193	62653413	XM_578716.1	LOC503193	XP_578716.1	ILMN_1363446	0003840441	S	204	CTGGAGGACAGCAGGACCGTGGTTGATGCCATGAAATTAGGAGTAAAGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210412K09 (LOC503193), mRNA.					
Rattus norvegicus	RefSeq	GI_62638903-S	ILMN_293077	CDC42EP5_PREDICTED	XM_001070494.1	XM_001070494.1		361505	109461157	XM_001070494.1	Cdc42ep5_predicted	XP_001070494.1	ILMN_1356318	0001990687	S	572	GTACACATAAATAGCCGAGTTTTACGCGGGAAGGGGTGCAGAAGCAGGAC				1q12	PREDICTED: Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 5 (predicted) (Cdc42ep5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649435-S	ILMN_266018	CMPK1	NM_001025655.1	NM_001025655.1		298410	71043751	NM_001025655.1	Cmpk1	NP_001020826.1	ILMN_1349851	0003940050	S	1403	GCTGTCTTCTGACATCATCTGTGGGGCAAGGGTCACAAGGAGTGACTTGT	5	-	135321240-135321289	5q36	Rattus norvegicus cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (Cmpk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6221] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + (d)CMP = ADP + (d)CDP [goid 4127] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor) [goid 16776] [evidence IEA]	MGC112719; RGD1310116	MGC112719; RGD1310116
Rattus norvegicus	RefSeq	GI_56090278-S	ILMN_276024	RPL23	NM_001007599.1	NM_001007599.1		29282	56090278	NM_001007599.1	Rpl23	NP_001007600.1	ILMN_1374916	0000050010	S	1	GGGGGACTCTTTCCGGACGCTCAAGATGTCGAAGCGAGGACGTGGTGGGT	10	-	86531056-86531072:86531516-86531528:86531529-86531548	10q31	Rattus norvegicus ribosomal protein L23 (Rpl23), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence NAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC72962	MGC72962
Rattus norvegicus	RefSeq	GI_12831226-S	ILMN_262531	AACS	NM_023104.1	NM_023104.1		65984	12831226	NM_023104.1	Aacs	NP_075592.1	ILMN_1353563	0004060431	S	2886	CTCAGAGGAAAATGGCCGCGTGCTCCCTCCTAATAGTTCCGGGCTCTTTC	12	-	32207118-32207167	12q14	Rattus norvegicus acetoacetyl-CoA synthetase (Aacs), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a oleate stimulus [goid 34201] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole [goid 50872] [evidence IEP]	Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA [goid 30729] [evidence IDA]; Catalysis of the reaction: ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA [goid 30729] [evidence NAS]; Catalysis of the reaction: ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA [goid 30729] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27690617-S	ILMN_49179	RGD1565159_PREDICTED	XM_227091.2	XM_227091.2		310365	109464361	XM_227091.2	RGD1565159_predicted	XP_227091.1	ILMN_1357992	0002340717	S	454	ATGGAAAGGAGCCTGAGCTGCTGGAGCCCATGCCATACGAATTCATGGCC	2	-	53113347-53113396	2q16	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1565159_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650490-S	ILMN_62233	MYCN	XM_234025.3	XM_234025.3		298894	62650490	XM_234025.3	Mycn	XP_234025.2	ILMN_1650532	0000150520	S	2034	CCCGCCTTTTGTATACGTCCTGGGTAATGAGAGGTGGCTCTCGGGCCAGT				6q14	PREDICTED: Rattus norvegicus v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) (Mycn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646247-S	ILMN_267060	RGD1563354_PREDICTED	XM_001068317.1	XM_001068317.1		311592	109471211	XM_001068317.1	RGD1563354_predicted	XP_001068317.1	ILMN_1352874	0006130577	S	3654	GGACCATCTTCCAGCTCCCGAAAACGCCAAGACGATGGGTGATTAGCCAC				3q42	PREDICTED: Rattus norvegicus similar to hypothetical protein D630003M21 (predicted) (RGD1563354_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34872287-S	ILMN_161840	LOC360801	XM_341072.1	XM_341072.1			34872287	XM_341072.1	LOC360801		ILMN_2039820	0004850221	S	2237	GCTCTCGCTGGACTGAGGAAGAGATGGAGACAGCAAAGAAAGGTGGGCAG					Rattus norvegicus similar to Nuclear receptor co-repressor 2 (N-CoR2) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated co-repressor) (T3 receptor-associating factor) (TRAC)... (LOC360801), mRNA.					
Rattus norvegicus	RefSeq	GI_27710529-S	ILMN_60798	LOC297110	XM_238352.1	XM_238352.1		297110	27710529	XM_238352.1	LOC297110	XP_238352.1	ILMN_1349075	0001050286	S	624	GAAGAGGAAGCGAGGGTCAGCACAGATGACAGACTCGGATCAACACCTGT					PREDICTED: Rattus norvegicus hypothetical LOC297110 (LOC297110), mRNA.					
Rattus norvegicus	RefSeq	GI_62650473-S	ILMN_281369	OSR1_PREDICTED	XM_001072238.1	XM_001072238.1		298878	109479128	XM_001072238.1	Osr1_predicted	XP_001072238.1	ILMN_1353643	0000070465	S	1526	CGGCTCTCCTAGGACGCGGCTAAAACTCTTGGCCAAAGGGCGGTACTCAA				6q14	PREDICTED: Rattus norvegicus odd-skipped related 1 (Drosophila) (predicted) (Osr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577398-S	ILMN_298786	OLR448	NM_001000287.1	NM_001000287.1		295720	47577398	NM_001000287.1	Olr448	NP_001000287.1	ILMN_1370910	0007000088	S	668	TCACCATCCTAAAGATTGGCTCTGCTGATGGGAGACGCAAAGCCTTCTCC	3	-	68882603-68882652	3q24	Rattus norvegicus olfactory receptor 448 (Olr448), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr448	Olr448
Rattus norvegicus	RefSeq	GI_62651241-S	ILMN_273620	RGD1562505_PREDICTED	XM_001069823.1	XM_001069823.1		314443	109479976	XM_001069823.1	RGD1562505_predicted	XP_001069823.1	ILMN_1369821	0003940369	S	1455	CTATCGGATGAGCAGACGGCGACGCTATGAAGGCCACAAGGTGGAAGGCT					PREDICTED: Rattus norvegicus similar to pre-mRNA splicing factor-like (predicted) (RGD1562505_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663793	ILMN_69104	CALM4_PREDICTED	XM_344627.2	XM_344627.2		364774	62663793	XM_344627.2	Calm4_predicted	XP_344628.2	ILMN_1650060	0004050079	S	763	GTCTTTGTCCCACAACCTACCCCATGCTGGACTTGAACCTGTGCACTGCC				17q12.3	PREDICTED: Rattus norvegicus calmodulin 4 (predicted) (Calm4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660605-S	ILMN_276407	RGD1564150_PREDICTED	XM_001062122.1	XM_001062122.1		498390	109500791	XM_001062122.1	RGD1564150_predicted	XP_001062122.1	ILMN_1364462	0005390180	S	3276	CCCTGCCCAGTGTGTGTTCAAGTGCTGGTTCTGTGGGCGGCTCTACGAAG				14q21	PREDICTED: Rattus norvegicus similar to mKIAA1729 protein (predicted) (RGD1564150_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605791	ILMN_296576	TMEM106C	NM_001008358.1	NM_001008358.1		315286	56605791	NM_001008358.1	Tmem106c	NP_001008359.1	ILMN_1649927	0000670315	S	1286	ACAGAGTGACTAGTTTTCCCCCAAGGGTCTACTGAAGGGCTTGACGGACC	7	+	136674453-136674502	7q36	Rattus norvegicus transmembrane protein 106C (Tmem106c), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105614; RGD1311532	MGC105614; RGD1311532
Rattus norvegicus	RefSeq	GI_62652308-S	ILMN_273626	POP1_PREDICTED	XM_001058648.1	XM_001058648.1		315045	109482110	XM_001058648.1	Pop1_predicted	XP_001058648.1	ILMN_1354438	0001580132	S	2952	CACACTGCTCCAGGCCCCTCCTGGGCTTCGTGACACATGGAGATTTCTCT				7q22	PREDICTED: Rattus norvegicus processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (predicted) (Pop1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665095-S	ILMN_296146	USP38_PREDICTED	XM_001073885.1	XM_001073885.1		307764	109508703	XM_001073885.1	Usp38_predicted	XP_001073885.1	ILMN_1364643	0001400176	S	3527	CCAATGGATTTGACGACAATGACCCACCAGGAAGCTGTGGGCCGACGGGT				19q11	PREDICTED: Rattus norvegicus ubiquitin specific protease 38 (predicted) (Usp38_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592058-S	ILMN_263949	RPL22	NM_031104.1	NM_031104.1		81768	13592058	NM_031104.1	Rpl22	NP_112366.1	ILMN_1372480	0000050132	S	156	AGGTGAACGGGAAAGCTGGTAACCTTGGCGGAGGGGTTGTGACCATCGAG	5	+	169561811-169561860	5q36	Rattus norvegicus ribosomal protein L22 (Rpl22), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of an alpha-beta T cell [goid 46632] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662663-S	ILMN_51100	LOC306464	XM_224859.3	XM_224859.3		306464	62662663	XM_224859.3	LOC306464	XP_224859.3	ILMN_1371913	0006860064	S	996	TAAGTAAGTCCTTTGATGGTGGCATCGGTGGCCTGGTCAGCTGTGCTCGG				16q11	PREDICTED: Rattus norvegicus similar to myeloid leukemia factor 1 interacting protein (LOC306464), mRNA.					
Rattus norvegicus	RefSeq	GI_11559934-S	ILMN_275635	MYO5A	NM_022178.1	NM_022178.1		25017	11559934	NM_022178.1	Myo5a	NP_071514.1	ILMN_1350840	0005340435	S	5250	CGGAAGCCATCTGCTCCATGTGCAACGCTCTGACCACAGCCCAGATTGTC	8	+	80026740-80026789	8q24	Rattus norvegicus myosin Va (Myo5a), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence TAS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Any complex of actin, myosin, and accessory proteins [goid 42641] [evidence ISS]; Any complex of actin, myosin, and accessory proteins [goid 42641] [evidence IEA]; The myosin part of any complex of actin, myosin, and accessory proteins [goid 42642] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The chemical reactions and pathways involving melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 6582] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IMP]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IMP]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IDA]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IEA]; Movement of a vesicle along an actin filament, mediated by motor proteins [goid 30050] [evidence IMP]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of the IP3 receptor [goid 31585] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the IP3 receptor [goid 31585] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement [goid 31987] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement [goid 31987] [evidence IEA]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence IDA]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence ISS]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence IMP]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence IEA]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence ISS]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence IEA]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence ISS]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence IEA]; The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 42438] [evidence ISS]; The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 42438] [evidence IEA]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence ISS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]; The chemical reactions and pathways resulting in the formation of long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 42759] [evidence ISS]; The chemical reactions and pathways resulting in the formation of long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 42759] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process by which endoplasmic reticulum is transported to, and/or maintained in, a specific location within the cell [goid 51643] [evidence ISS]; Any process by which endoplasmic reticulum is transported to, and/or maintained in, a specific location within the cell [goid 51643] [evidence IEA]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence IDA]; Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence IEA]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IMP]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP [goid 43008] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IPI]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]	D; Myh12; Dop	D; Myh12; Dop
Rattus norvegicus	RefSeq	GI_57012419-S	ILMN_297891	RT1-CE10	NM_001008833.1	NM_001008833.1		414792	57012419	NM_001008833.1	RT1-CE10	NP_001008833.1	ILMN_1358690	0006100373	S	494	AGAAGACCCGGAGCAAGTGGGAGAGGGAAGGTGTTGCAGAGAGAAGCAGG	20	+	3469479-3469528	20p12	Rattus norvegicus RT1 class I, CE10 (RT1-CE10), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		MGC114586	MGC114586
Rattus norvegicus	RefSeq	GI_47577162	ILMN_269705	OLR341	NM_001001042.1	NM_001001042.1		405928	47577162	NM_001001042.1	Olr341	NP_001001042.1	ILMN_1372448	0000450092	S	121	CTAGGAATGATCCTGCTGATTGTCTTGGACTCTCGACTCCACACTCCCAT	1	-	216010398-216010447	1q43	Rattus norvegicus olfactory receptor 341 (Olr341), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr341	Olr341
Rattus norvegicus	RefSeq	GI_62664564-S	ILMN_264936	TUBB6	NM_001025675.1	NM_001025675.1		307351	71043679	NM_001025675.1	Tubb6	NP_001020846.1	ILMN_1358531	0002690093	S	1287	TGTCCGAGTACCAGCAGTACCAGGACGCCACAGTCAACGATGGGGAAGAG	18	+	63928951-63929000	18q12.1	Rattus norvegicus tubulin, beta 6 (Tubb6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC116110; RGD1305887	MGC116110; RGD1305887
Rattus norvegicus	RefSeq	GI_62658412-S	ILMN_264638	LNX2_PREDICTED	XM_001069634.1	XM_001069634.1		360761	109496550	XM_001069634.1	Lnx2_predicted	XP_001069634.1	ILMN_1354119	0002970575	S	1733	CCTGGCTCGAGACGGCAGGATCAAGAGAGGTGACGTGTTGCTGAACATCA				12p11	PREDICTED: Rattus norvegicus ligand of numb-protein X 2 (predicted) (Lnx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663791-S	ILMN_271014	TUBAL3_PREDICTED	XM_001068605.1	XM_001068605.1		291287	109506124	XM_001068605.1	Tubal3_predicted	XP_001068605.1	ILMN_1361459	0004610068	S	1917	CTGGTACATCACAGAAGGCATGGAGCTTGGGGAGTTTGAAGAGGCCAGGG				17q12.3	PREDICTED: Rattus norvegicus tubulin, alpha-like 3 (predicted) (Tubal3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652983-S	ILMN_289756	ADAMTS20_PREDICTED	XM_001058144.1	XM_001058144.1		315263	109482782	XM_001058144.1	Adamts20_predicted	XP_001058144.1	ILMN_1353099	0002510450	S	4783	GAGGGCAGACTGTGCGTGTGAAAATGACTACCCACCTGCCGGATACACTG					PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 (predicted) (Adamts20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649038-S	ILMN_53925	LOC500470	XM_575834.1	XM_575834.1		500470	62649038	XM_575834.1	LOC500470	XP_575834.1	ILMN_1357435	0004590341	S	1249	CCCACCAGGGATTGCCCCTTTGAATGTAATCGATGTGGTAAGGCCTTTAG					PREDICTED: Rattus norvegicus similar to Zink-finger protein 37 (LOC500470), mRNA.					
Rattus norvegicus	RefSeq	GI_47577772-S	ILMN_276028	OLR629	NM_001001058.1	NM_001001058.1		405946	47577772	NM_001001058.1	Olr629	NP_001001058.1	ILMN_1367196	0004760377	S	571	TACAGAGTTGGACTTCTGGTGGTTGCCAATTCAGGCATGATGGGACTGGT	3	-	72306202-72306251	3q24	Rattus norvegicus olfactory receptor 629 (Olr629), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr629	Olr629
Rattus norvegicus	RefSeq	GI_16758287-S	ILMN_284517	NOX4	NM_053524.1	NM_053524.1		85431	16758287	NM_053524.1	Nox4	NP_445976.1	ILMN_1369376	0006660603	S	1930	AGTGTGGCAAAAATGACATGGTTAATCTGCAAGCCAAAGGGGCCCTGAAG	1	+	143603308-143603357	1q32	Rattus norvegicus NADPH oxidase 4 (Nox4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IMP]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IDA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual [goid 35051] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence IDA]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule [goid 50664] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_25742809-S	ILMN_65656	SLC8A1	NM_019268.1	NM_019268.1		29715	25742809	NM_019268.1	Slc8a1	NP_062141.1	ILMN_1367372	0002650075	S	2791	GCTTTCATCAATGTGGGGGTGCTGCTGTATCGGCGGAGGCCAGAAATAGG				6q12	Rattus norvegicus solute carrier family 8 (sodium/calcium exchanger), member 1 (Slc8a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IPI]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IEA]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence TAS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IMP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Ncx1; Ncx	Ncx1; Ncx
Rattus norvegicus	RefSeq	GI_62648384-S	ILMN_66030	LOC502888	XM_578389.1	XM_578389.1		502888	62648384	XM_578389.1	LOC502888	XP_578389.1	ILMN_1362529	0004850706	S	1139	GGGTCATAAGCAGGGGAATACAGAAAGGGCCGTGGTCATTGCATCAGGGG					PREDICTED: Rattus norvegicus similar to adaptin-ear-binding coat-associated protein 1 (LOC502888), mRNA.					
Rattus norvegicus	RefSeq	GI_62641964-S	ILMN_67223	TNFRSF26_PREDICTED	XM_341968.2	XM_341968.2		361685	62641964	XM_341968.2	Tnfrsf26_predicted	XP_341969.2	ILMN_1351130	0000360441	S	610	GAAGAGCCCTAAATGATGTCAACGACACCGTCTCAATTCCGCGCCAACCT				1q41	PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 26 (predicted) (Tnfrsf26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649641-A	ILMN_288243	TEKT2	NM_001011977.1	NM_001011977.1		298532	58865521	NM_001011977.1	Tekt2	NP_001011977.1	ILMN_1376431	0002450524	S	1310	TTGGACACCAAGTGTATGGACATCCGACGCAAGCTGACCGTGCCGGCTGA	5	-	145691308-145691357	5q36	Rattus norvegicus tektin 2 (testicular) (Tekt2), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; Cell motility due to movement of cilia or flagella [goid 1539] [evidence ISS]; Cell motility due to movement of cilia or flagella [goid 1539] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662362-S	ILMN_267753	SLC35E1_PREDICTED	XM_001067877.1	XM_001067877.1		306328	109503908	XM_001067877.1	Slc35e1_predicted	XP_001067877.1	ILMN_1349599	0006100128	S	1842	CCACTTTATGGCTGAGTACCTGAAGCAGGAGGAGAGCAGTCGGCAAGGGG				16p14	PREDICTED: Rattus norvegicus solute carrier family 35, member E1 (predicted) (Slc35e1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13470095-S	ILMN_275890	AGXT	NM_030656.1	NM_030656.1		24792	13470095	NM_030656.1	Agxt	NP_085914.1	ILMN_1353055	0002850280	S	1378	TCCTGGAGGGGCTGGGAATATAGCAGGAACGAGAAGACTGTGCAAGCCCT	9	+	92421858-92421907	9q36	Rattus norvegicus alanine-glyoxylate aminotransferase (Agxt), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 7813517] [evidence TAS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [pmid 14561759] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [pmid 7813517] [evidence TAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [pmid 14561759] [evidence IDA]	The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence ISS]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycine by the transamination of glyoxylate [goid 19265] [evidence IDA]; The chemical reactions and pathways resulting in the formation of pyruvate, 2-oxopropanoate [goid 42866] [evidence IDA]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence ISS]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence IEA]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence ISS]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence IEA]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence IEA]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence IEA]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence IEA]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence IEA]	Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine [goid 4760] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence ISS]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IMP]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IDA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine [goid 4760] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	Spat	Spat
Rattus norvegicus	RefSeq	GI_62656633-I	ILMN_60541	RNF135_PREDICTED	XM_573156.1	XM_573156.1		303350	62656633	XM_573156.1	Rnf135_predicted	XP_573156.1	ILMN_1375546	0003290494	S	8	CCTGAACAGAATTCAGCAGCGACGGGCACTTTTAGAGGTTGGGGGAGAGC				10q26	PREDICTED: Rattus norvegicus ring finger protein 135 (predicted) (Rnf135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638566-S	ILMN_55997	LOC499026	XM_579902.1	XM_579902.1		499026	62638566	XM_579902.1	LOC499026	XP_579902.1	ILMN_1356746	0002190463	S	380	ACTCCTCTGTCCAAGGAACTGCACAGTCCAAACAACACTATGATTGCAGG					PREDICTED: Rattus norvegicus LOC499026 (LOC499026), mRNA.					
Rattus norvegicus	RefSeq	GI_47577968-S	ILMN_286359	OLR1107	NM_001000424.1	NM_001000424.1		300202	47577968	NM_001000424.1	Olr1107	NP_001000424.1	ILMN_1355441	0002190114	S	647	TCTCCTATGCCCGGATTGTCTCCGCCATCTTGAGCATCAGTTCCACCACC	7	+	137164424-137164473	7q36	Rattus norvegicus olfactory receptor 1107 (Olr1107), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1107	Olr1107
Rattus norvegicus	RefSeq	GI_47577226-S	ILMN_265660	OLR734_PREDICTED	XM_001077615.1	XM_001077615.1		404809	109470284	XM_001077615.1	Olr734_predicted	XP_001077615.1	ILMN_1367566	0001050358	S	548	CGAGGCGTTCTGATACCCTGCCTGTAGACAAGATGATAGCTGTGTTCTAC				3q24	PREDICTED: Rattus norvegicus olfactory receptor 734 (predicted) (Olr734_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392982-S	ILMN_272138	BGN	XM_001057996.1	XM_001057996.1		25181	109462351	XM_001057996.1	Bgn	XP_001057996.1	ILMN_2040208	0005900477	S	2293	CCACCCCGAACCAGTTTGCATTGGCCCCTGCCCTCTCCCCAAGATGGCTA				Xq37	PREDICTED: Rattus norvegicus biglycan (Bgn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649594-S	ILMN_60250	PABPC4_PREDICTED	XM_216517.3	XM_216517.3		298510	62649594	XM_216517.3	Pabpc4_predicted	XP_216517.2	ILMN_1372583	0004060687	S	2443	ACCAGAAGAGTCAAAAGCCAAATAACCCCTCACGGCATTCAGCTGAGGTC				5q36	PREDICTED: Rattus norvegicus poly A binding protein, cytoplasmic 4 (predicted) (Pabpc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639062-S	ILMN_58283	RGD1564549_PREDICTED	XM_214831.4	XM_214831.4		292654	109458247	XM_214831.4	RGD1564549_predicted	XP_214831.2	ILMN_1357240	0003850731	S	754	AGCAGGGCTGTGGGGACTGGCTGGGCCTGATGACTGGGACATTAAAACCT	1	+	76718895-76718944	1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20512 (predicted) (RGD1564549_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758291-S	ILMN_301078	POLG	NM_053528.1	NM_053528.1		85472	16758291	NM_053528.1	Polg	NP_445980.1	ILMN_1368767	0005080139	S	3417	CATGTTTGCCTACAAGCTGGGTCTGAATGACCTGCCCCAGTCAGTTGCCT	1	-	135197651-135197700	1q31	Rattus norvegicus polymerase (DNA directed), gamma (Polg), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A DNA polymerase complex consisting of a large subunit, responsible for the catalytic activities, and a small accessory subunit. Functions in the replication and repair of mitochondrial DNA [goid 5760] [evidence IDA]; A DNA polymerase complex consisting of a large subunit, responsible for the catalytic activities, and a small accessory subunit. Functions in the replication and repair of mitochondrial DNA [goid 5760] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized in the mitochondrion [goid 6264] [evidence ISS]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643324-S	ILMN_65312	LOC499591	XM_574917.1	XM_574917.1		499591	62643324	XM_574917.1	LOC499591	XP_574917.1	ILMN_1349392	0003780167	S	4920	AGTGAGAGAGCCACAGGGCATCAATCAGGTACCAAGATCAGCCACATGGC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499591), mRNA.					
Rattus norvegicus	RefSeq	GI_62648642-S	ILMN_56572	LOC502935	XM_578437.1	XM_578437.1		502935	62648642	XM_578437.1	LOC502935	XP_578437.1	ILMN_1364276	0004010253	S	2075	AGCATCATCAGGCTGGGTTGGCTGCCTGGCTGTCACAGTCTCTGAAATTG				5q11	PREDICTED: Rattus norvegicus similar to eyes absent 1 isoform c (LOC502935), mRNA.					
Rattus norvegicus	RefSeq	GI_55926213-S	ILMN_301546	FKBPL	NM_001002818.2	NM_001002818.2		406168	55926213	NM_001002818.2	Fkbpl	NP_001002818.1	ILMN_1370814	0004200037	S	1136	AGCAGTAGATCCCAAAAACCGTGCCGCGAAAGAGGAGCTGGGGAAGGTGG	20	-	4201193-4201242	20p12	Rattus norvegicus FK506 binding protein-like (Fkbpl), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665629-A	ILMN_286940	LY6G6F	NM_001003691.1	NM_001003691.1		309609	51100975	NM_001003691.1	Ly6g6f	NP_001003691.1	ILMN_1376620	0006770026	S	750	GATGCTGTTGTTCGCAGCAGGCCAAGGGGTCACCATCATAGCCCTCAGCA	20	+	3805676-3805725	20p12	Rattus norvegicus lymphocyte antigen 6 complex, locus G6F (Ly6g6f), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			G6f	G6f
Rattus norvegicus	RefSeq	GI_13786133-S	ILMN_287635	PRL3C1	NM_031316.1	NM_031316.1		58937	13786133	NM_031316.1	Prl3c1	NP_112606.1	ILMN_1369785	0003990131	S	388	CTGCAGTGTTGACTCATTTGGGCTCCTATGATGGTATGATGGCAAGAGCC	17	-	44379214-44379263	17p11	Rattus norvegicus Prolactin family 3, subfamily c, member 1 (Prl3c1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpi; Prlpj	Prlpi; Prlpj
Rattus norvegicus	RefSeq	GI_25742640-S	ILMN_301715	GAS7	NM_053484.1	NM_053484.1		85246	25742640	NM_053484.1	Gas7	NP_445936.1	ILMN_1356585	0001990463	S	5943	CCCTGGGGAAAGAGATACCCAGAAGCACCCCCTTACAACCTGAGCACATG				10q24	Rattus norvegicus growth arrest specific 7 (Gas7), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Assembly of actin filaments by the addition of actin monomers to a filament [goid 30041] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34860674-S	ILMN_56844	LOC362266	XM_342573.1	XM_342573.1		362266	34860674	XM_342573.1	LOC362266	XP_342574.1	ILMN_1375132	0003990601	S	374	GGAACAAGCATACGCCAAGGTGGCTCAGATTCCTAAACTTCTCGACCAGG					PREDICTED: Rattus norvegicus similar to Csr1 (LOC362266), mRNA.					
Rattus norvegicus	RefSeq	GI_62663145-S	ILMN_283218	MGC114246	NM_001017509.1	NM_001017509.1		498688	62945373	NM_001017509.1	MGC114246	NP_001017509.1	ILMN_1356365	0006350020	S	671	GGCGGTCTTCAGTCCGAGGCAACATATCCATATGAAGGGAAAGATGGACC	17	+	9277983-9278024:9278479-9278486	17p14	Rattus norvegicus similar to cathepsin R (MGC114246), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639339-S	ILMN_50252	RGD1308055_PREDICTED	XM_218484.4	XM_218484.4		308496	109458507	XM_218484.4	RGD1308055_predicted	XP_218484.4	ILMN_1366639	0004540347	S	1525	GCACCCCCAGGCTTGTCCTCTTAGGACCGAAACCCAGAACCTGGACTGAT	1	+	85383156-85383179:85383180-85383205	1q21	PREDICTED: Rattus norvegicus similar to T-cell activation NFKB-like protein (predicted) (RGD1308055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577554-S	ILMN_300035	OLR513	NM_001000313.1	NM_001000313.1		295766	47577554	NM_001000313.1	Olr513	NP_001000313.1	ILMN_1353888	0004480193	S	878	GGAACAAGGATGTGAAAGATGCTAGGCAGAGGATATGGAAGAAGATGTGC	3	-	69803670-69803719	3q24	Rattus norvegicus olfactory receptor 513 (Olr513), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-69700969-69700034_ORF; Olr513	ratchr3-69700969-69700034_ORF; Olr513
Rattus norvegicus	RefSeq	GI_38454209-S	ILMN_278873	COMMD3	XM_001073695.1	XM_001073695.1		291339	109506212	XM_001073695.1	Commd3	XP_001073695.1	ILMN_1360747	0004010131	S	887	AACTTGGGGAAGCTGATGACCCAGGAGCCTAGAGGAAAACCAGACGCGCC				17q12.3	PREDICTED: Rattus norvegicus COMM domain containing 3 (Commd3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645797-S	ILMN_53202	RGD1562702_PREDICTED	XM_575227.2	XM_575227.2		499882	109468746	XM_575227.2	RGD1562702_predicted	XP_575227.1	ILMN_1373167	0002640253	S	1598	GCTGTCAAACTTGGAAGATTTTAAACCTACCCAGAAGTCCACCTGGGTGC	3	+	112980737-112980786	3q36	PREDICTED: Rattus norvegicus similar to CREBBP/EP300 inhibitory protein 1 (predicted) (RGD1562702_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342208-S	ILMN_270336	TPSG1	NM_175593.2	NM_175593.2		302990	31342208	NM_175593.2	Tpsg1	NP_783183.1	ILMN_1367793	0005670504	S	723	TGACCGCCCTGGCGTCTATGCTCGGGTTACTGCCTATGTAAACTGGATCC	10	+	14621127-14621176	10q12	Rattus norvegicus tryptase gamma 1 (Tpsg1), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655209-S	ILMN_49708	STK36_PREDICTED	XM_217435.4	XM_217435.4		301516	109486155	XM_217435.4	Stk36_predicted	XP_217435.4	ILMN_1351272	0004050170	S	3941	TAAAGTGCCAAGTACCCCAGCGGCTCCTAGAAATGGCGTGTGGAGACCCT	9	+	73975711-73975760	9q33	PREDICTED: Rattus norvegicus serine/threonine kinase 36 (fused homolog, Drosophila) (predicted) (Stk36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090434-S	ILMN_296417	RGD1359634	NM_001007708.1	NM_001007708.1		315126	56090434	NM_001007708.1	RGD1359634	NP_001007709.1	ILMN_1368668	0003140605	S	1052	ATGAGACAGTACCCTAGACGCTGCCCAGGGATGCAGAGCCTCAGTGGGAT	7	-	117115428-117115477	7q34	Rattus norvegicus similar to RIKEN cDNA 1700088E04 (RGD1359634), mRNA.				MGC93972	MGC93972
Rattus norvegicus	RefSeq	GI_13928817-S	ILMN_288414	PTPRN2	NM_031600.1	NM_031600.1		29714	13928817	NM_031600.1	Ptprn2	NP_113788.1	ILMN_1351681	0003190692	S	4928	CAGCTCAAGCTCTGGTGACAGGAACGGATGTAATTGGGAGCAAGGCTTCC	6	+	144548839-144548888	6q33	Rattus norvegicus protein tyrosine phosphatase, receptor type, N polypeptide 2 (Ptprn2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650481-S	ILMN_282163	RGD1559792_PREDICTED	XM_001072749.1	XM_001072749.1		298884	109479138	XM_001072749.1	RGD1559792_predicted	XP_001072749.1	ILMN_1360538	0007100315	S	2872	AGGACTCTGCTGACTGCTGGGAAAGTCCTCTCCCTTTACGCCAGAGGTTA				6q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830483C08 gene (predicted) (RGD1559792_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078648-S	ILMN_294817	ACOT9	NM_001013960.1	NM_001013960.1		302640	62078648	NM_001013960.1	Acot9	NP_001013982.1	ILMN_1370027	0006380068	S	1393	CTGTGGAGCCCTAGGAAAAATCTCACTTGTTGCAAATCAGCACTTCAGGC	X	-	61548498-61548534:61548535-61548547	Xq22	Rattus norvegicus acyl-CoA thioesterase 9 (Acot9), mRNA.				Acot9; Acate2	Acot9; Acate2
Rattus norvegicus	RefSeq	GI_62645419-S	ILMN_263933	TP53I11_PREDICTED	XM_001070488.1	XM_001070488.1		311209	109470262	XM_001070488.1	Tp53i11_predicted	XP_001070488.1	ILMN_1372071	0001980138	S	2579	TGGCCTCCGGGACACACTAAGCTTGGAAGGAGGCAGCAATGGAGACAGGA				3q24	PREDICTED: Rattus norvegicus tumor protein p53 inducible protein 11 (predicted), transcript variant 1 (Tp53i11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665732-S	ILMN_296045	SRPK1	NM_001025726.1	NM_001025726.1		361811	71043649	NM_001025726.1	Srpk1	NP_001020897.1	ILMN_1351516	0000870138	S	1889	GCCTTGGGGTCTTCTGGAGGTTCTGGTGGAGAAGTATGAGTGGCCTCAGG	20	-	6829766-6829815	20p12	Rattus norvegicus SFRS protein kinase 1 (Srpk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; Any process that modulates the frequency, rate or extent of mRNA processing, those processes involved in the conversion of a primary mRNA transcript into a mature mRNA prior to its translation into polypeptide [goid 50684] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC116186	MGC116186
Rattus norvegicus	RefSeq	GI_62652472-S	ILMN_48113	NDUFB9_PREDICTED	XM_216929.4	XM_216929.4		299954	109480809	XM_216929.4	Ndufb9_predicted	XP_216929.3	ILMN_1364409	0002630133	S	554	GGTGGCATATTGTGACCAGACCTCGGGAACGGCCCACATAGAGACAGGCA	7	-	95949392-95949401:95949402-95949441	7q33	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (predicted) (Ndufb9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665093-S	ILMN_54131	LOC364985	XM_344752.2	XM_344752.2		364985	62665093	XM_344752.2	LOC364985	XP_344753.2	ILMN_1359381	0006450725	S	485	GTGCAGGCCCAATAGGAAAGGCTTCTGCCAGTGTGAAGACAGACGGACTG				19q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC364985), mRNA.					
Rattus norvegicus	RefSeq	GI_16758331-S	ILMN_300828	RPE65	NM_053562.1	NM_053562.1		89826	16758331	NM_053562.1	Rpe65	NP_446014.1	ILMN_1361431	0006760273	S	1487	GAAGAAGATGATGGTGTAGTTCTGAGTGTGGTGGTGAGTCCTGGGGCAGG	2	+	257878867-257878916	2q45	Rattus norvegicus retinal pigment epithelium 65 (Rpe65), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence NAS]; Any process that modulates the frequency, rate or extent of rhodopsin gene expression. This includes transcriptional, translational, or posttranslational regulation [goid 7468] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A [goid 42574] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47087112-S	ILMN_286064	SLC44A4	NM_212541.1	NM_212541.1		294255	47087112	NM_212541.1	Slc44a4	NP_997706.1	ILMN_2039744	0006200719	S	1798	CTTTGGGAAGCTGCTGGTGGTCGGAGGTGTCGGTGTTCTGTCCTTCTTCT	20	-	4006932-4006951:4007055-4007084	20p12	Rattus norvegicus solute carrier family 44, member 4 (Slc44a4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Ng22	Ng22
Rattus norvegicus	RefSeq	GI_62649176-S	ILMN_61253	LOC500488	XM_580072.1	XM_580072.1		500488	62649176	XM_580072.1	LOC500488	XP_580072.1	ILMN_1359785	0000510670	S	1400	ACAGGTGGCATGTACCCTGGCTGAGGTAACATTAGTCATTGCTCTGGGGG					PREDICTED: Rattus norvegicus LOC500488 (LOC500488), mRNA.					
Rattus norvegicus	RefSeq	GI_62660963-S	ILMN_66993	LOC501936	XM_577362.1	XM_577362.1		501936	62660963	XM_577362.1	LOC501936	XP_577362.1	ILMN_1361938	0000770471	S	91	CCAACAAGCCTGCGGAAGGGCGTTATCCTGGGGATCTAAGAGTGGAAACT					PREDICTED: Rattus norvegicus similar to apurinic/apyrimidinic endonuclease 2 (LOC501936), mRNA.					
Rattus norvegicus	RefSeq	GI_62659604-S	ILMN_270401	RGD1559491_PREDICTED	XM_222818.3	XM_222818.3		304922	62659604	XM_222818.3	RGD1559491_predicted	XP_222818.2	ILMN_1373525	0004610300	S	1588	CCAATGGAAGCGGACGGTGAAGCCAACCAGAACAAGGGCTGTCGGCGAAG	13	-	78609968-78610017	13q22	PREDICTED: Rattus norvegicus similar to Putative dimethylaniline monooxygenase [N-oxide-forming] 6 (Flavin-containing monooxygenase 6) (predicted) (RGD1559491_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651076-S	ILMN_68814	NEK9_PREDICTED	XM_216755.4	XM_216755.4		299204	109478521	XM_216755.4	Nek9_predicted	XP_216755.4	ILMN_1371075	0005290129	S	2744	CCCGGCTGAATCCTGCAGTGCCGTGTGTTGGGAAAGCATTGACCTCTCCT	6	-	109349963-109350012	6q31	PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)- related kinase 9 (predicted) (Nek9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079078-S	ILMN_289538	RGD1311265	NM_001014173.1	NM_001014173.1		361976	62079078	NM_001014173.1	RGD1311265	NP_001014195.1	ILMN_1367830	0005340133	S	1670	TCTTGCTGGCCCCACTGGTAGAGACATTGATTCTGCTGGACCGGATGCTC	2	-	180002304-180002353	2q34	Rattus norvegicus similar to CGI-41 protein (RGD1311265), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62661213-S	ILMN_67093	LOC501962	XM_577390.1	XM_577390.1		501962	62661213	XM_577390.1	LOC501962	XP_577390.1	ILMN_1354258	0000380369	S	854	GGTCCAGCTCCACCAGTGCACCTTAGACTCTCCTGTGTGGTGGGCACATA					PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC501962), mRNA.					
Rattus norvegicus	RefSeq	GI_62653574-S	ILMN_291717	RGD1559807_PREDICTED	XM_001066511.1	XM_001066511.1		500986	109484592	XM_001066511.1	RGD1559807_predicted	XP_001066511.1	ILMN_1374346	0004560184	S	1323	GGAGGTGAACGGATGTCCTGTGGGTGGAGACAGTGACCTGGATACGCTTC				8q22	PREDICTED: Rattus norvegicus similar to PDZ domain containing 2 (predicted) (RGD1559807_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52486809-A	ILMN_295349	TACC2	NM_001004418.1	NM_001004418.1		309025	52486827	NM_001004418.1	Tacc2	NP_001004418.1	ILMN_1376798	0006860253	A	3821	TCGTAGCAAGTTGACCTCGGAGTTCCTGTACCAGGAGGATCATCAGACTC	1	+	190085536-190085585	1q37	Rattus norvegicus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant 2, mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle [goid 22027] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles [goid 30953] [evidence ISS]; Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton [goid 32886] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_52486827	ILMN_295349	TACC2	NM_001004418.1	NM_001004418.1		309025	52486827	NM_001004418.1	Tacc2	NP_001004418.1	ILMN_1650063	0002640541	S	3745	TAAGGTTGGTTTGACCGTATGCAGTGCCGAGACCTACCAGGACTCCTTGC	1	+	190085460-190085509	1q37	Rattus norvegicus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant 2, mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle [goid 22027] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles [goid 30953] [evidence ISS]; Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton [goid 32886] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643985-S	ILMN_52780	LOC502551	XM_578037.1	XM_578037.1		502551	62643985	XM_578037.1	LOC502551	XP_578037.1	ILMN_1351726	0002850138	S	242	GGGGGAGCAATCATGCAAGGAGCCCAGGTGTCTATCATTTACTGCTGCAC				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ4 (LOC502551), mRNA.					
Rattus norvegicus	RefSeq	GI_62639820-S	ILMN_284706	RGD1565164_PREDICTED	XM_001053795.1	XM_001053795.1		361582	109462027	XM_001053795.1	RGD1565164_predicted	XP_001053795.1	ILMN_1372956	0005890300	S	323	GGAGGAGTTTTTTCATCCAAGAAGAACTGGGCCTCCTTACATTCGGGTGG				1q22	PREDICTED: Rattus norvegicus similar to associated molecule with the SH3 domain of STAM (predicted) (RGD1565164_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164084-S	ILMN_289013	LOC494224	NM_001009505.1	NM_001009505.1		494224	57164084	NM_001009505.1	LOC494224	NP_001009505.1	ILMN_1368437	0005130053	S	139	GCCAGTGATGAGTTACCTGAACGGATTTCTTTTCCCCCATTCGGGCCTCC	14	-	21690614-21690663	14p21	Rattus norvegicus follicular dendritic cell secreted (LOC494224), mRNA.					
Rattus norvegicus	RefSeq	GI_62664633-S	ILMN_51859	LOC498884	XM_574172.1	XM_574172.1		498884	62664633	XM_574172.1	LOC498884	XP_574172.1	ILMN_1356017	0000460292	S	1347	ATTAAAGCCAAGGGTGGAGGGCAGCTCAGCGATGGCGTCTGTAGGTGGTG					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498884), mRNA.					
Rattus norvegicus	RefSeq	GI_47576800-S	ILMN_276692	OLR193	NM_001000186.1	NM_001000186.1		293336	47576800	NM_001000186.1	Olr193	NP_001000186.1	ILMN_1374379	0000940471	S	891	GAGAACCAGGGAGATTAAGCAGGGAATTCAGAACTTGCTGAGGAGGTGGT	1	-	162895760-162895809	1q33	Rattus norvegicus olfactory receptor 193 (Olr193), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr193	Olr193
Rattus norvegicus	RefSeq	GI_62647509-S	ILMN_70024	LOC502790	XM_578289.1	XM_578289.1		502790	62647509	XM_578289.1	LOC502790	XP_578289.1	ILMN_1353332	0002320164	S	376	GTCCCGGAGTCCCTTCCCGGTTCTCCAGCAGTGGCTATGGCACAGATTTT					PREDICTED: Rattus norvegicus similar to Ig kappa chain V region EV15 precursor (LOC502790), mRNA.					
Rattus norvegicus	RefSeq	GI_62655133-S	ILMN_67863	RAPH1_PREDICTED	XM_343579.2	XM_343579.2		363239	62655133	XM_343579.2	Raph1_predicted	XP_343580.2	ILMN_1350185	0006660050	S	2631	TTCTCGGAAGCCTGGAAGCGAGGCACTCAGTTGGAAGAGTCCAGCAAGTA				9q31	PREDICTED: Rattus norvegicus Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (predicted) (Raph1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47059168-S	ILMN_286444	ARL9	NM_212459.1	NM_212459.1		289565	47059168	NM_212459.1	Arl9	NP_997624.1	ILMN_1360934	0002970332	S	386	ATATCCACGATGCTTTGGCTCTGTCTGACGTGGGGAACGACAGGAAGCTC	14	-	33452482-33452531	14p11	Rattus norvegicus ADP-ribosylation factor-like 9 (Arl9), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666176-S	ILMN_61829	LOC502438	XM_577919.1	XM_577919.1		502438	62666176	XM_577919.1	LOC502438	XP_577919.1	ILMN_1363548	0000380008	S	276	ACCGATGGCTGCTGCAGGAGAAATTCTGGTAGCAAGGAGTACGAGGGTGT				20q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC502438), mRNA.					
Rattus norvegicus	RefSeq	GI_34861037-S	ILMN_66013	LOC360318	XM_346568.1	XM_346568.1		360318	34861037	XM_346568.1	LOC360318	XP_346569.1	ILMN_1366494	0001850139	S	559	CTCCTACCTTCGTGTTCTCCTACATGGAGAGCTGGAGCAAGCTGGAAGCC					PREDICTED: Rattus norvegicus hypothetical LOC360318 (LOC360318), mRNA.					
Rattus norvegicus	RefSeq	GI_62647462-S	ILMN_67936	LOC362384	XM_342708.2	XM_342708.2		362384	62647462	XM_342708.2	LOC362384	XP_342709.2	ILMN_1364068	0005910541	S	1378	CATGGCTGTGTGGTTGGTAGGGCAGAGCTGAGGCAGGAGTGCAGTGTTTC				4q33	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13110 (predicted) (LOC362384), mRNA.					
Rattus norvegicus	RefSeq	GI_31341320-S	ILMN_48234	NCSTN	NM_174864.3	NM_174864.3		289231	77404340	NM_174864.3	Ncstn	NP_777353.1	ILMN_1361918	0006450520	S	2009	GAGCTCCACAGAATACTCTACGTGGGCCGAGAGCCGCTGGAAAGATATCC	13	-	88061881-88061930	13q24	Rattus norvegicus nicastrin (Ncstn), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEP]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652671-S	ILMN_58222	RECQL4_PREDICTED	XM_216973.4	XM_216973.4		300057	109480938	XM_216973.4	Recql4_predicted	XP_216973.4	ILMN_1358040	0004230397	S	3700	ATGACCACCAAACATGGGAGGGGCTACATGAGGGGGCATGGGGCAAGCCA	7	-	114752991-114753037:114753038-114753040	7q34	PREDICTED: Rattus norvegicus RecQ protein-like 4 (predicted) (Recql4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556985-A	ILMN_271853	TF	NM_001013110.1	NM_001013110.1		24825	61556985	NM_001013110.1	Tf	NP_001013128.1	ILMN_1376249	0003190022	S	2203	CCTGAGCGGCTGGGGCTAACTGTGTCCGTCTTCACTGCTGTGTGTTACCA	8	-	108217813-108217862	8q32	Rattus norvegicus transferrin (Tf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tfn; Trf; MGC93500	Tfn; Trf; MGC93500
Rattus norvegicus	RefSeq	GI_62662227-S	ILMN_56976	MAPK8	XM_341399.2	XM_341399.2		116554	62662227	XM_341399.2	Mapk8	XP_341400.2	ILMN_1365337	0000520520	S	1031	GGTGTCTATGGTGGATTGTACCTCAGTTGTGCTGATGGTGTCTGTGGTGG				16p16	PREDICTED: Rattus norvegicus mitogen-activated protein kinase 8 (Mapk8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; A cell projection part that is part of an axon [goid 33267] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; The process of introducing a phosphate group into a JUN protein [goid 7258] [evidence ISS]; The process of introducing a phosphate group into a JUN protein [goid 7258] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence IMP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence TAS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661978-S	ILMN_49140	LOC290362	XM_224348.3	XM_224348.3		290362	62661978	XM_224348.3	LOC290362	XP_224348.3	ILMN_1365169	0006520609	S	6692	CACAGAGGCACTGATGCTGGAAGTCCAAAGGATCCACCTGGCTCAGAGGA					PREDICTED: Rattus norvegicus similar to Neurogenic locus notch homolog protein 4 precursor (Notch 4) (hNotch4) (LOC290362), mRNA.					
Rattus norvegicus	RefSeq	GI_62638382-S	ILMN_276660	TCF21	NM_001032397.1	NM_001032397.1		252856	74048315	NM_001032397.1	Tcf21	NP_001027569.1	ILMN_1352700	0002060372	S	974	CTTGATTAACTTCTGCCCTGAATGACTGTGAGCCTGGCTGGTCCAAGTGC	1	+	23213655-23213704	1p12	Rattus norvegicus transcription factor 21 (Tcf21), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence IEA]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; The process by which the anatomical structures of the digestive tract are generated and organized during embryonic development. The digestive tract is the tube extending from the mouth to the anus, including the pharynx, esophagus, stomach, and intestines [goid 48557] [evidence IMP]; The process whose specific outcome is the progression of a gland over time, from its formation to the mature structure. A gland is an organ specialised for secretion [goid 48732] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	MGC112908; Pod1; Msf-1; Capsulin	MGC112908; Pod1; Msf-1; Capsulin
Rattus norvegicus	Unigene	Rn.27177	ILMN_161361	RN.27177	Rn.27177		Rn.27177		20427894	BQ211429			ILMN_1530195	0000780091	S	239	TTTTGACTGACCACTTATTTTAGCCTCTTTCTTCCTATTGCTTACTACAG					UI-R-DY1-cok-d-24-0-UI.s1 UI-R-DY1 Rattus norvegicus cDNA clone UI-R-DY1-cok-d-24-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62078900-S	ILMN_293883	RGD1359449	NM_001014084.1	NM_001014084.1		314959	62078900	NM_001014084.1	RGD1359449	NP_001014106.1	ILMN_1367654	0003850494	S	1426	GCTTACAAGAGTGCTGTTATTGTATGGTGGCAAGGTGAGACCACAGGGAG	7	+	101145075-101145124	7q33	Rattus norvegicus gasdermin domain containing protein RGD1359449 (RGD1359449), mRNA.					
Rattus norvegicus	RefSeq	GI_40254756-S	ILMN_274436	AKR1A1	NM_031000.2	NM_031000.2		78959	40254756	NM_031000.2	Akr1a1	NP_112262.1	ILMN_1373732	0005890270	S	1232	GCCCATGATTACGGTGGATGGGAAGAGAGTCCCCAGAGATGCTGGACACC	5	-	136920678-136920719:136921978-136921985	5q36	Rattus norvegicus aldo-keto reductase family 1, member A1 (Akr1a1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence ISS]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of D-glucuronate, the dextrorotatory isomer of glucuronate [goid 42840] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of D-glucuronate, the dextrorotatory isomer of glucuronate [goid 42840] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O [goid 46185] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O [goid 46185] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence ISS]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+ [goid 8106] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: L-gulonate + NADP+ = D-glucuronate + NADPH [goid 47939] [evidence ISS]; Catalysis of the reaction: L-gulonate + NADP+ = D-glucuronate + NADPH [goid 47939] [evidence IEA]	Akr1a4	Akr1a4
Rattus norvegicus	RefSeq	GI_62079024-S	ILMN_279895	RELL2	NM_001014149.1	NM_001014149.1		361313	62079024	NM_001014149.1	Rell2	NP_001014171.1	ILMN_1353611	0003190348	S	1109	GGAAGACTCAAGGATGCCAGCCTAGTCCCTTGTACACTTGAGGGGACCCC	18	+	30879246-30879295	18p11	Rattus norvegicus RELT-like 2 (Rell2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109265	MGC109265
Rattus norvegicus	RefSeq	GI_14269575-S	ILMN_280819	KCNIP3	NM_032462.1	NM_032462.1		65199	14269575	NM_032462.1	Kcnip3	NP_115851.1	ILMN_1370370	0005550181	S	460	TCCACTTTGAGGACTTTGTGGTTGGGCTCTCCATCCTGCTTCGAGGGACC	3	-	114963087-114963128:114967715-114967722	3q36	Rattus norvegicus Kv channel interacting protein 3, calsenilin (Kcnip3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS];  [goid 15459] [evidence IDA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]	Dream; rKChIP3	Dream; rKChIP3
Rattus norvegicus	RefSeq	GI_56090340-S	ILMN_302596	RGD1359334	NM_001007638.1	NM_001007638.1		295265	56090340	NM_001007638.1	RGD1359334	NP_001007639.1	ILMN_1372613	0006020253	S	1017	GCCCAGCTCTTGCCTTTTGGAAACGTGTCAGGATTGGCCTGGAGGATATC	2	-	190150635-190150684	2q34	Rattus norvegicus similar to hypothetical protein FLJ20519 (RGD1359334), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			MGC94920	MGC94920
Rattus norvegicus	RefSeq	GI_62659361	ILMN_276240	TMEM58_PREDICTED	XM_001062943.1	XM_001062943.1		360848	109498673	XM_001062943.1	Tmem58_predicted	XP_001062943.1	ILMN_1649766	0006020142	S	1070	AGGCCGTGGATGAGGGGTGGGTAGGGAGGGCTTGGGATTCATGAGCTATT				13q13	PREDICTED: Rattus norvegicus transmembrane protein 58 (predicted) (Tmem58_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50300478-S	ILMN_280168	ENTH	NM_001002022.1	NM_001002022.1		360515	50300478	NM_001002022.1	Enth	NP_001002022.1	ILMN_1354245	0001230059	S	1539	AATGTAAGACAGCAAGAACCCCACTTCCACCGCCATAGTCCAGCGTGGGC	10	+	31046897-31046946	10q21	Rattus norvegicus enthoprotin (Enth), mRNA.	A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IDA]	The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles [goid 48193] [evidence IPI]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IMP]	Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IDA]	Epn4; Clint	Epn4; Clint
Rattus norvegicus	RefSeq	GI_62638265-S	ILMN_63619	LOC502211	XM_577673.1	XM_577673.1		502211	62638265	XM_577673.1	LOC502211	XP_577673.1	ILMN_1350465	0002900020	S	2920	AGATGGGTCTTCAAACCACGTTTGCAGGAAATAAGATGTGTGGTCTCTGC				1p13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC502211), mRNA.					
Rattus norvegicus	RefSeq	GI_62648333-S	ILMN_285535	SURB7_PREDICTED	XM_001074060.1	XM_001074060.1		312849	109474462	XM_001074060.1	Surb7_predicted	XP_001074060.1	ILMN_1361287	0006350601	S	409	GCACAGTCACAGCTGAAGACCAGAAGTGTTACCCATAGTCAGTCTCTCCC				4q44	PREDICTED: Rattus norvegicus SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae) (predicted) (Surb7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576844-S	ILMN_277010	OLR208	NM_001000194.1	NM_001000194.1		293355	47576844	NM_001000194.1	Olr208	NP_001000194.1	ILMN_1367117	0000520280	S	417	GATCTGCTGGCTTGGGGTGTTCATATCATGGGCCTTGGCATCTCTGAGTG	1	-	163928662-163928711	1q33	Rattus norvegicus olfactory receptor 208 (Olr208), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr208	Olr208
Rattus norvegicus	RefSeq	GI_56605731-S	ILMN_294027	FAM96A	NM_001008327.1	NM_001008327.1		300797	56605731	NM_001008327.1	Fam96a	NP_001008328.1	ILMN_1360423	0004670021	S	845	GAAAGCTGGGATTAAAGGTGTGAGCCACCACTGGCCAGCCTTCAGAGTGT	8	+	70422405-70422454	8q24	Rattus norvegicus family with sequence similarity 96, member A (Fam96a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Fam96a; MGC105538	Fam96a; MGC105538
Rattus norvegicus	RefSeq	GI_62665064-S	ILMN_52491	LOC502193	XM_577654.1	XM_577654.1		502193	62665064	XM_577654.1	LOC502193	XP_577654.1	ILMN_1372550	0006980746	S	1477	TGTGGCAGTCCTGGAACAGGGCCGAGGTCGCCCAGGGATTTGAATATGTC					PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2 I (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO-1 conjugating enzyme) (Ubiquitin-conjugating enzyme UbcE2A) (LOC502193), mRNA.					
Rattus norvegicus	RefSeq	GI_62658840	ILMN_50918	RGD1307973_PREDICTED	XM_222150.4	XM_222150.4		304469	109495862	XM_222150.4	RGD1307973_predicted	XP_222150.3	ILMN_1650442	0003830541	S	2078	TCGGACAGGTGGAGCCTCTAATCATAGGACGGGCTACCCAGTTTGGCTGG	12	+	33221914-33221963	12q15	PREDICTED: Rattus norvegicus similar to 2900002H16Rik protein (predicted) (RGD1307973_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664027-S	ILMN_52234	RGD1562371_PREDICTED	XM_574101.2	XM_574101.2		498819	109506293	XM_574101.2	RGD1562371_predicted	XP_574101.2	ILMN_1349006	0003170088	S	653	ACCTAGTCAGAACCTCCCAGGGCGTGCTATCAAAGGGACCTCTCATCTGC	18	+	1810909-1810958	18p13	PREDICTED: Rattus norvegicus similar to GREB1 protein isoform a (predicted) (RGD1562371_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664029-S	ILMN_52234	RGD1562371_PREDICTED	XM_574101.2	XM_574101.2		498819	109506293	XM_574101.2	RGD1562371_predicted	XP_574101.2	ILMN_1363691	0000630112	S	3754	GGACCTGAGACTACTGAGAACCCCAATGAGCCTGTGTTCCTGCGAGTGTT	18	+	1931071-1931120	18p13	PREDICTED: Rattus norvegicus similar to GREB1 protein isoform a (predicted) (RGD1562371_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078626-S	ILMN_296577	RIBC2	NM_001013949.1	NM_001013949.1		300122	62078626	NM_001013949.1	Ribc2	NP_001013971.1	ILMN_1374218	0004120278	S	1059	TGAGGCTTCAGGAGGAAGAGCGCCAGCACAACATGGACTGGGACCTGCGC	7	+	123150818-123150819:123153919-123153966	7q34	Rattus norvegicus RIB43A domain with coiled-coils 2 (Ribc2), mRNA.				RGD1309033	RGD1309033
Rattus norvegicus	RefSeq	GI_40786466-S	ILMN_298612	DPAGT1	NM_199388.1	NM_199388.1		300668	40786466	NM_199388.1	Dpagt1	NP_955420.1	ILMN_1357055	0002940253	S	1642	AGGAATCCCCTGGGCCTTGAGAGAGAACCTGGGCTAGGGCTAGAGTTAGG	8	+	47311325-47311374	8q22	Rattus norvegicus dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) (Dpagt1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate [goid 6047] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dolichol-linked oligosaccharide, usually by a stepwise addition of glycosyl chains to endoplasmic reticulum membrane-bound dolichol-P [goid 6488] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units [goid 19348] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units [goid 19408] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence NAS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence IDA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence ISS]; Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol [goid 8963] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Dpagt1	Dpagt1
Rattus norvegicus	RefSeq	GI_62639099-S	ILMN_264248	GPR4	NM_001025680.1	NM_001025680.1		308408	71043601	NM_001025680.1	Gpr4	NP_001020851.1	ILMN_1351646	0002900373	S	1261	TCACCCTGGAGACACCATTGACCTCCAAGAGGAGCACCACCGGCAAAACG	1	+	78587801-78587850	1q21	Rattus norvegicus G protein-coupled receptor 4 (Gpr4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC116369	MGC116369
Rattus norvegicus	RefSeq	GI_62640875-S	ILMN_276298	TYR_MAPPED	XM_001060770.1	XM_001060770.1		308800	109462395	XM_001060770.1	Tyr_mapped	XP_001060770.1	ILMN_1361218	0005670332	S	1656	GGCTATGCCATCAGAAGAAAAAGCAACCCCAGGAGGAAAGGCAGCCCCTC				1q32	PREDICTED: Rattus norvegicus tyrosinase (albino coat color) (mapped) (Tyr_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62658056	ILMN_68737	LOC288010	XM_221337.3	XM_221337.3		288010	62658056	XM_221337.3	LOC288010	XP_221337.3	ILMN_1650820	0003060438	S	1459	GCTCTGGACCGTGATTTCCATGTGCACTGCTACCGCTGTGAGTGTGCTGT				11q23	PREDICTED: Rattus norvegicus similar to LIM domain containing preferred translocation partner in lipoma; LIM domain-containing preferred translocation partner in lipoma; Lipoma-preferred-partner gene (LOC288010), mRNA.					
Rattus norvegicus	RefSeq	GI_62662967-S	ILMN_60020	MYOM2	XM_240481.4	XM_240481.4		306616	109503557	XM_240481.4	Myom2	XP_240481.4	ILMN_1349664	0000670603	S	4438	GGAGAAGATCCCCGACATCTCAGCTCCCCAGCAGGCCAAACCCAAGCTTA	16	-	79330420-79330469	16q12.5	PREDICTED: Rattus norvegicus myomesin 2 (Myom2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_11560019-S	ILMN_291494	ACCN5	NM_022227.1	NM_022227.1		63866	11560019	NM_022227.1	Accn5	NP_071563.1	ILMN_1359453	0004730670	S	1389	GCAGTGAGTGTGCCCGAGTTACTTGCAGATGTTGGAGGTCAGCTGGGACT	2	+	173660684-173660707:173661773-173661798	2q33	Rattus norvegicus amiloride-sensitive cation channel 5, intestinal (Accn5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA];  [goid 15280] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Inac; Blinac	Inac; Blinac
Rattus norvegicus	RefSeq	GI_34854075-S	ILMN_298866	LOC686082	XM_001066470.1	XM_001066470.1		686082	109457837	XM_001066470.1	LOC686082	XP_001066470.1	ILMN_1361381	0002350056	S	263	GTCCAACAGCAAGAAAGGCGATGAAACTCCCTTGGTTCAAAGAACACTGG	1	+	50619222-50619271	1q12	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC686082), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646692-S	ILMN_53997	LOC499981	XM_575335.1	XM_575335.1		499981	62646692	XM_575335.1	LOC499981	XP_575335.1	ILMN_1357001	0000610204	S	914	AGCAGGAAGCCGCCATTTGAGTGAATTGATCTGCAGGAGGCACAGACACC					PREDICTED: Rattus norvegicus similar to lamin B3 (LOC499981), mRNA.					
Rattus norvegicus	RefSeq	GI_62642638	ILMN_290267	RGD1563903_PREDICTED	XM_001061405.1	XM_001061405.1		365613	109496274	XM_001061405.1	RGD1563903_predicted	XP_001061405.1	ILMN_1650062	0005340301	S	386	GGTGAACAAGGCTCCTACGATGCGCAGACGAACCTACAGAGCTCACGGCT				2q11	PREDICTED: Rattus norvegicus hypothetical gene supported by X60212 (predicted) (RGD1563903_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653289-S	ILMN_269903	ZFP426	XM_001076925.1	XM_001076925.1		367034	109484340	XM_001076925.1	Zfp426	XP_001076925.1	ILMN_1367280	0000610577	S	1958	GTGTCAGCAGTGTGGAAAAGCCTACAGTCACCCTCGTTCACTTCGCAGAC				8q13	PREDICTED: Rattus norvegicus zinc finger protein 426 (Zfp426), mRNA.					
Rattus norvegicus	RefSeq	GI_62651749-S	ILMN_57677	DAZAP1_PREDICTED	XM_343164.2	XM_343164.2		362836	62651749	XM_343164.2	Dazap1_predicted	XP_343165.2	ILMN_1354101	0002850193	S	1747	CGGGCTGGGGTGCGGGCAGAGACTACTGCGTGCGTTTGGTTTTTTGTTCA				7q11	PREDICTED: Rattus norvegicus DAZ associated protein 1 (predicted) (Dazap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577800-S	ILMN_287802	OLR1231	NM_001000813.1	NM_001000813.1		405099	47577800	NM_001000813.1	Olr1231	NP_001000813.1	ILMN_1374257	0000060452	S	126	GGTGGGAAACATTGGCTTGATCACCTTGATTAGCCTCAATCCTCACCTGC	8	+	40507428-40507477	8q22	Rattus norvegicus olfactory receptor 1231 (Olr1231), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1231	Olr1231
Rattus norvegicus	RefSeq	GI_13928967-S	ILMN_282366	ST3GAL2	NM_031695.1	NM_031695.1		64442	13928967	NM_031695.1	St3gal2	NP_113883.1	ILMN_1349516	0005080736	S	2443	CCGAGAAGGGCTGTAGCGGAACCTCTCAGGGCTCTAATCATCGTGCAGTC				19q12	Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 2 (St3gal2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IDA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IDA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	Siat5; Siat4b	Siat5; Siat4b
Rattus norvegicus	RefSeq	GI_62661858-S	ILMN_65004	LOC501983	XM_577412.1	XM_577412.1		501983	62661858	XM_577412.1	LOC501983	XP_577412.1	ILMN_1359756	0005420064	S	50	ACTCAAGGCTTCTAAGCAGCTCTCCCCAGATTCTACCTCTGGCCCCGAAC					PREDICTED: Rattus norvegicus similar to TRAV13D-1 (LOC501983), mRNA.					
Rattus norvegicus	RefSeq	GI_62661197-S	ILMN_273199	LOC498477	XM_573735.1	XM_573735.1		498477	62661197	XM_573735.1	LOC498477	XP_573735.1	ILMN_1348867	0001400039	S	879	TCCACCAGGAGCACTGAGGGTGCAAAGATTGACAACACCTCCCGCATCTC	15	+	20327114-20327163	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498477), mRNA.					
Rattus norvegicus	RefSeq	GI_62648986-S	ILMN_281362	RNF20_PREDICTED	XM_001053543.1	XM_001053543.1		313216	109476457	XM_001053543.1	Rnf20_predicted	XP_001053543.1	ILMN_1359730	0003440309	S	4090	CCAGAGAGGGTTGGTGAATTATGAATTACTGTCATCATCCTCTCAGAGGG				5q22	PREDICTED: Rattus norvegicus ring finger protein 20 (predicted), transcript variant 4 (Rnf20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660538-S	ILMN_56516	LOC289656	XM_223453.2	XM_223453.2		289656	62660538	XM_223453.2	LOC289656	XP_223453.2	ILMN_1352779	0006520048	S	664	TCAACTGACCACTGGCCTTAGCTCTGGGATGCTGGGTGGAAGCTGGGGCT				14q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC289656), mRNA.					
Rattus norvegicus	RefSeq	GI_62666826	ILMN_50942	LOC501556	XM_576960.1	XM_576960.1		501556	62666826	XM_576960.1	LOC501556	XP_576960.1	ILMN_1650354	0000050113	S	668	CTACCCACCAGTGTATCTGTTCAACTCCCAATTTTGATGCTGGGGCTGGC				Xq21	PREDICTED: Rattus norvegicus similar to uracil DNA glycosylase (LOC501556), mRNA.					
Rattus norvegicus	RefSeq	GI_62653059-S	ILMN_55005	RACGAP1_PREDICTED	XM_235650.4	XM_235650.4		315298	109481272	XM_235650.4	Racgap1_predicted	XP_235650.3	ILMN_1354270	0006420181	S	1701	TGTTCCAGGACATCAAACGCCAGCTCAAGGTGGTGGAGCGCCTGCTCTCT	7	-	138369072-138369093:138369316-138369343	7q36	PREDICTED: Rattus norvegicus Rac GTPase-activating protein 1 (predicted) (Racgap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090366-S	ILMN_289179	ASCC1	NM_001007632.1	NM_001007632.1		294512	56090366	NM_001007632.1	Ascc1	NP_001007633.1	ILMN_1349263	0002850129	S	1269	AGCACCACAGCAGCAGGCCCTTCCTTCAGGCTCCAGTTGACTGACGAGGA	20	+	27391348-27391397	20q11	Rattus norvegicus activating signal cointegrator 1 complex subunit 1 (Ascc1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC94577; CGI-18; Asc-1	MGC94577; CGI-18; Asc-1
Rattus norvegicus	RefSeq	GI_62718407-S	ILMN_58393	LOC501392	XM_576804.1	XM_576804.1		501392	62718407	XM_576804.1	LOC501392	XP_576804.1	ILMN_1374109	0002120458	S	440	CAGCCTTAGAAATCTCAGCTTACAGAGAGGGGAAGATGGGAACTTTGTTC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34) (LOC501392), mRNA.					
Rattus norvegicus	RefSeq	GI_62718421-S	ILMN_59014	LOC503345	XM_578881.1	XM_578881.1		503345	62718421	XM_578881.1	LOC503345	XP_578881.1	ILMN_1360675	0000870735	S	361	GAAAACATGGCTCTAAGGTCAACTGGAGGGGGGTGGTCCTAGCCGAGGTG					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC503345), mRNA.					
Rattus norvegicus	RefSeq	GI_31542349-S	ILMN_282257	CCNH	NM_052981.2	NM_052981.2		84389	31542349	NM_052981.2	Ccnh	NP_443213.2	ILMN_1373618	0005570132	S	1222	ACCCAAACAGGAAGAGGAGGAGTGGACGGACGATGACCTGGTAGATGCTC	2	+	14199657-14199673:14200542-14200574	2q11	Rattus norvegicus cyclin H (Ccnh), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence ISS]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence IEA]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658152-S	ILMN_53232	LOC360735	XM_341008.2	XM_341008.2		360735	62658152	XM_341008.2	LOC360735	XP_341009.2	ILMN_1368820	0000770148	S	1562	ATGAAAGTGTTTGGAGAGGAGGCAGGGGCCAGGCTAGGGGCGCATGTCCT					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC21688 (predicted) (LOC360735), mRNA.					
Rattus norvegicus	RefSeq	GI_34866983-S	ILMN_62686	RGD1564268_PREDICTED	XM_235399.3	XM_235399.3		300001	109480870	XM_235399.3	RGD1564268_predicted	XP_235399.2	ILMN_1354466	0002370131	S	63	CAAGGTGATGAAAAACTTCAGCAAGCGGGGACACAGCCGGTGCCGCGATC	7	-	111183193-111183242	7q34	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (predicted) (RGD1564268_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653846-S	ILMN_274129	CAR12	XM_001075974.1	XM_001075974.1		363085	109484876	XM_001075974.1	Car12	XP_001075974.1	ILMN_1354371	0002100047	S	1402	GAACTAGGGGGCAGGAGTTTTGAGTGGACTTCTCCAGCTGTGTGAGACGG				8q24	PREDICTED: Rattus norvegicus carbonic anyhydrase 12, transcript variant 1 (Car12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718451-S	ILMN_60799	LOC364164	XM_344247.2	XM_344247.2		364164	62718451	XM_344247.2	LOC364164	XP_344248.2	ILMN_1369877	0000450438	S	331	TATATCTATGATGAGTGGGACCACAGGAAGGAGGACATCGTGCAGGCAGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC364164), mRNA.					
Rattus norvegicus	RefSeq	GI_47606360-S	ILMN_294235	OLR72	NM_001001284.1	NM_001001284.1		405015	47606360	NM_001001284.1	Olr72	NP_001001284.1	ILMN_1373418	0004560195	S	941	GGTGGGAAACTTCAGCTTCCATGAAAGTGTGGGTTACATCACTATATCTG	1	-	160804962-160805011	1q32	Rattus norvegicus olfactory receptor 72 (Olr72), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr72	Olr72
Rattus norvegicus	RefSeq	GI_62656050-S	ILMN_68733	PHF15_PREDICTED	XM_220398.3	XM_220398.3		303113	62656050	XM_220398.3	Phf15_predicted	XP_220398.3	ILMN_1364213	0000110487	S	2814	CCATGCAACATCGCCGGGCTTCTGGCTTGATGTAGACGAGGTGAGGGAGA				10q22	PREDICTED: Rattus norvegicus PHD finger protein 15 (predicted) (Phf15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718014-S	ILMN_61070	LOC501279	XM_576694.1	XM_576694.1		501279	62718014	XM_576694.1	LOC501279	XP_576694.1	ILMN_1351214	0006550048	S	104	CGTGTCGTTCTTACTGGCGAGACATTGGGTGAGCGATATGTGGTGCCGAA					PREDICTED: Rattus norvegicus similar to Ac1576 (LOC501279), mRNA.					
Rattus norvegicus	RefSeq	GI_62667244-S	ILMN_297730	ARMCX1	NM_001024367.1	NM_001024367.1		501619	66730534	NM_001024367.1	Armcx1	NP_001019538.1	ILMN_1362651	0001660044	S	1889	CAATAGCCATCGATGCTGGCTTTAGACTGAGCCACTCTCAGTATGCCAAA	X	+	122180248-122180297	Xq34	Rattus norvegicus armadillo repeat containing, X-linked 1 (Armcx1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.19435	ILMN_161080	RN.19435	Rn.19435		Rn.19435		8505489	BE113384			ILMN_1530558	0002060333	S	565	TTAAAATAAGCTCTTCCAATGTCCTTAAACACTGCCCTTATTCTTCACAA					UI-R-BJ1-awe-g-03-0-UI.s1 UI-R-BJ1 Rattus norvegicus cDNA clone UI-R-BJ1-awe-g-03-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62650300-S	ILMN_52797	LOC500614	XM_575985.1	XM_575985.1		500614	62650300	XM_575985.1	LOC500614	XP_575985.1	ILMN_1374246	0003130181	S	231	CACTTGGTAGCCCGAGTTGTCAGATGCTGGCTCTACTTTCTCGCGTCTTG					PREDICTED: Rattus norvegicus similar to Phosphatidylinositol glycan, class F (LOC500614), mRNA.					
Rattus norvegicus	RefSeq	GI_62079282-S	ILMN_289828	ARMCX3	NM_001014273.1	NM_001014273.1		367902	62079282	NM_001014273.1	Armcx3	NP_001014295.1	ILMN_1373755	0004210056	S	1541	CCAAACTGACTGAGCGGATGTTCCCAAAGAGCCAGGAATAACTTGGTGGC	X	+	122220654-122220694:122220695-122220703	Xq34	Rattus norvegicus armadillo repeat containing, X-linked 3 (Armcx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114263-S	ILMN_269031	V1RK1	NM_001008951.1	NM_001008951.1		494296	57114263	NM_001008951.1	V1rk1	NP_001008951.1	ILMN_1354546	0005080253	S	275	GGGGCCTTTCCCTCTGTACTATCTTGCTGCTGAGTGTATTTCAAGCCATC	1	-	73446659-73446708	1q21	Rattus norvegicus vomeronasal 1 receptor, K1 (V1rk1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577436-S	ILMN_300513	OLR463	NM_001000934.1	NM_001000934.1		405255	47577436	NM_001000934.1	Olr463	NP_001000934.1	ILMN_1354749	0000060537	S	580	CTCTCTTGCTCTGACACTCGCATTAATGGCATTGTGATCATGGCCTTCTC	3	+	69098416-69098465	3q24	Rattus norvegicus olfactory receptor 463 (Olr463), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr463	Olr463
Rattus norvegicus	RefSeq	GI_47576644-S	ILMN_272353	OLR1688	NM_001000275.1	NM_001000275.1		294164	47576644	NM_001000275.1	Olr1688	NP_001000275.1	ILMN_1365870	0000380068	S	757	TCAACAGGCATTTGTGCCTTTCTAAACACAACCTCAGACTCTTCAGCTGC	20	+	540831-540880	20p12	Rattus norvegicus olfactory receptor 1688 (Olr1688), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr20-540075-541079_ORF; Olr1688	ratchr20-540075-541079_ORF; Olr1688
Rattus norvegicus	RefSeq	GI_62658752-S	ILMN_277878	LOC368001	XM_001077499.1	XM_001077499.1		368001	109497203	XM_001077499.1	LOC368001	XP_001077499.1	ILMN_1373568	0000630047	S	687	GGTGCCCCACCCTTGAAGCGATTTTGTGTGGACCAACCTGTAGTGCCGCA				12q12	PREDICTED: Rattus norvegicus similar to B-cell CLL/lymphoma 7B isoform 1 (LOC368001), mRNA.					
Rattus norvegicus	RefSeq	GI_62654690-S	ILMN_70298	RGD1305680_PREDICTED	XM_217342.4	XM_217342.4		301235	109485708	XM_217342.4	RGD1305680_predicted	XP_217342.4	ILMN_1358209	0005550601	S	2909	CACATGGAGATGCCGTGCCTCGACTCCTTCCAGGACAAAGCCCTGAGGAA	9	+	9378262-9378311	9q12	PREDICTED: Rattus norvegicus similar to KIAA0240 (predicted) (RGD1305680_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855241-S	ILMN_266257	RGD1310803_PREDICTED	XM_001074832.1	XM_001074832.1		361515	109461318	XM_001074832.1	RGD1310803_predicted	XP_001074832.1	ILMN_1363723	0005390162	S	1010	GACCTGAGAACCCCCCAAAGAAGAAAGCCATGACCTGGGCCTCAAACAGG				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10781 (predicted) (RGD1310803_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663750-S	ILMN_66543	RGD1560155_PREDICTED	XM_225523.4	XM_225523.4		307067	109505147	XM_225523.4	RGD1560155_predicted	XP_225523.4	ILMN_1374708	0001450010	S	4995	GACATACAGACACTCGGGCCACACTCAAAGGAGGAGCCTGATACGGTGGG	17	-	71436992-71437041	17q12.1	PREDICTED: Rattus norvegicus similar to mKIAA0934 protein (predicted) (RGD1560155_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955165-S	ILMN_270378	IIIG9	NM_145786.1	NM_145786.1		252958	21955165	NM_145786.1	Iiig9	NP_665729.1	ILMN_1353844	0002060736	S	1203	ACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTATGCCCTCAGTGA	1	-	212955576-212955625	1q43	Rattus norvegicus IIIG9 protein (Iiig9), mRNA.				MGC93144	MGC93144
Rattus norvegicus	RefSeq	GI_6978804-S	ILMN_284200	EMD	NM_012948.1	NM_012948.1		25437	6978804	NM_012948.1	Emd	NP_037080.1	ILMN_1362093	0000730020	S	1109	GCCTCCTAGCCTTATTGCCTCTGACTCTTAGGGTATGGGGATCTGGTGGG	X	-	160351344-160351393	Xq37	Rattus norvegicus emerin (Emd), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The reformation of the nuclear envelope following its breakdown in the context of a normal process [goid 31468] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646755-S	ILMN_57023	LOC499991	XM_575346.1	XM_575346.1		499991	62646755	XM_575346.1	LOC499991	XP_575346.1	ILMN_1372478	0002650451	S	1376	CAGCTGGTTCCAAACTGCGCTCCCTCAACCTCTTGATGCTAGCTCCGCCA				4q12	PREDICTED: Rattus norvegicus similar to Ab1-219 (LOC499991), mRNA.					
Rattus norvegicus	RefSeq	GI_62642644-S	ILMN_54078	RHOBTB3_PREDICTED	XM_226604.4	XM_226604.4		309922	109464183	XM_226604.4	Rhobtb3_predicted	XP_226604.4	ILMN_1351539	0002510040	S	1904	GGGAGCTGGCCTCCATGAACCTTGACATTGTGGACTTGCTCAAAAAGGCC	2	-	2919948-2919997	2q11	PREDICTED: Rattus norvegicus Rho-related BTB domain containing 3 (predicted) (Rhobtb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705462-S	ILMN_293887	SLC12A5	NM_134363.1	NM_134363.1		171373	19705462	NM_134363.1	Slc12a5	NP_599190.1	ILMN_1354340	0006400333	S	5260	GCCTGGTAGTGAGAAGAGTGTTGCTTTTGTTTCAGCCGACCTATGTGCAG	3	+	156037666-156037715	3q42	Rattus norvegicus solute carrier family 12 (potassium-chloride transporter), member 5 (Slc12a5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in) [goid 15379] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in) [goid 15379] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kcc2	Kcc2
Rattus norvegicus	RefSeq	GI_62645437-S	ILMN_264722	API5_PREDICTED	XM_001071044.1	XM_001071044.1		362170	109470272	XM_001071044.1	Api5_predicted	XP_001071044.1	ILMN_1357965	0000360102	S	3262	CCTAGGCTCCCTTGGAATCTGAACAGACAGGAACATGGGATTGCCAGTTG				3q31	PREDICTED: Rattus norvegicus apoptosis inhibitor 5 (predicted) (Api5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718394-S	ILMN_298204	LOC691146	XM_001076998.1	XM_001076998.1		691146	109513598	XM_001076998.1	LOC691146	XP_001076998.1	ILMN_1373314	0001780050	S	1525	GCCAGGACAGCCTCAAAGAAAAGTTTGCACAAAGACCCACCCCAGGCTCC	Un|NW_047886.1	+	151934-151983		PREDICTED: Rattus norvegicus similar to chromosome 9 open reading frame 36 (LOC691146), mRNA.					
Rattus norvegicus	RefSeq	GI_62666662-S	ILMN_65895	LOC367754	XM_346281.2	XM_346281.2		367754	62666662	XM_346281.2	LOC367754	XP_346282.2	ILMN_1359706	0002470707	S	3914	GAGAAAGCACACCAGAACTTCGGTGCTCTGTCGTCTTTATAGCTAATACA				Xq14	PREDICTED: Rattus norvegicus similar to leucine-rich repeats and calponin homology (CH) domain containing 2 (LOC367754), mRNA.					
Rattus norvegicus	RefSeq	GI_62653731-S	ILMN_67763	LOC501004	XM_576414.1	XM_576414.1		501004	62653731	XM_576414.1	LOC501004	XP_576414.1	ILMN_1348863	0001780014	S	853	TTGCAGGAGCTGTCCAGGGTGCTAGATGTTCGGCCATGCCTCGTTCAGGT					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3a (V-fos transformation effector protein) (LOC501004), mRNA.					
Rattus norvegicus	RefSeq	GI_12018313-S	ILMN_280753	PHKA1	NM_022626.1	NM_022626.1		64561	12018313	NM_022626.1	Phka1	NP_072148.1	ILMN_1365657	0003940121	S	3392	AGTCCGTCCTGAACCGTGTGCCTCAGCCAGAGTACCGTCAGCTTCTGGTT	X	-	90554271-90554320	Xq31	Rattus norvegicus phosphorylase kinase alpha 1 (Phka1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence TAS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline [goid 4105] [evidence TAS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	Pcyt1b	Pcyt1b
Rattus norvegicus	RefSeq	GI_47576610-S	ILMN_270808	OLR1673	NM_001000268.1	NM_001000268.1		294143	47576610	NM_001000268.1	Olr1673	NP_001000268.1	ILMN_1362854	0002030403	S	408	GAAGCAGCGTAACTGTGTCCTGTTAGTGTCCATTGTGTGGCTGATTGGAA	20	-	196952-197001	20p12	Rattus norvegicus olfactory receptor 1673 (Olr1673), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1673	Olr1673
Rattus norvegicus	RefSeq	GI_16758107-S	ILMN_302341	HCN1	NM_053375.1	NM_053375.1		84390	16758107	NM_053375.1	Hcn1	NP_445827.1	ILMN_1374930	0000870202	S	2646	CAGCGTGTCACCTTGTTCAGACAGATGTCCTCGGGAGCCATTCCCCCCAA	2	+	49938929-49938978	2q15	Rattus norvegicus hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 (Hcn1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence ISS]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644311-S	ILMN_69579	LOC310880	XM_227717.3	XM_227717.3		310880	62644311	XM_227717.3	LOC310880	XP_227717.3	ILMN_1371983	0002360451	S	5617	AGGAAGAAGGGAAGACGGACTGCAGCATGCAAGCCAGTGTGAACCACAGC				2q42	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11331 (predicted) (LOC310880), mRNA.					
Rattus norvegicus	RefSeq	GI_62665748-S	ILMN_64224	CPNE5_PREDICTED	XM_228044.3	XM_228044.3		309650	62665748	XM_228044.3	Cpne5_predicted	XP_228044.3	ILMN_1372080	0003840538	S	2192	GAGCAGATAGAGTCCCCTTCCCGATCCTCAAAGGCTCAGTGGTATGCTAG				20p12	PREDICTED: Rattus norvegicus copine V (predicted) (Cpne5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576422-S	ILMN_279615	OLR1581	NM_001000533.1	NM_001000533.1		364054	47576422	NM_001000533.1	Olr1581	NP_001000533.1	ILMN_1362067	0002970451	S	432	AGCCTCTTCAGTCTGTGCCATGGGGTTCTTGCTCTCACTAGCCCAGGCTG	13	-	89392134-89392183	13q24	Rattus norvegicus olfactory receptor 1581 (Olr1581), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1581	Olr1581
Rattus norvegicus	RefSeq	GI_62642775-S	ILMN_60599	LOC497750	XM_579364.1	XM_579364.1		497750	62642775	XM_579364.1	LOC497750	XP_579364.1	ILMN_2039002	0000450474	S	1826	CACTGGTAGAAGATGACGAGGATTTGCCCCACCATGATGAGAAGACGTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013005 (LOC497750), mRNA.					
Rattus norvegicus	RefSeq	GI_62653273-S	ILMN_67591	NAALAD2_PREDICTED	XM_235877.4	XM_235877.4		300384	109483078	XM_235877.4	Naalad2_predicted	XP_235877.3	ILMN_1368436	0006220711	S	2637	GCATATCCAGTGAAAGTGAAAGAGGAAGCAAGCCCAGTGCTCTCAGGCAG	8	-	15768019-15768068	8q12	PREDICTED: Rattus norvegicus N-acetylated alpha-linked acidic dipeptidase 2 (predicted) (Naalad2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651328-S	ILMN_58123	LOC362796	XM_343122.2	XM_343122.2		362796	62651328	XM_343122.2	LOC362796	XP_343123.2	ILMN_1352100	0005130358	S	357	AACACCCAATACCTGCAAATGGACAGTCTGAGGTCTGAGGACACGGCCAC					PREDICTED: Rattus norvegicus similar to gamma-2a immunoglobulin heavy chain (LOC362796), mRNA.					
Rattus norvegicus	RefSeq	GI_16758953-S	ILMN_277862	FBP2	NM_053716.1	NM_053716.1		114508	16758953	NM_053716.1	Fbp2	NP_446168.1	ILMN_1351099	0005270072	S	973	TGTAAAGCCTGAGAGCATTCACCAGCGAGTCCCCCTCATTCTGGGGTCCC	17	+	7841357-7841406	17p14	Rattus norvegicus fructose-1,6-bisphosphatase 2 (Fbp2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence ISS]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IDA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IEA]; Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3 [goid 42578] [evidence IEA]	FBPase	FBPase
Rattus norvegicus	RefSeq	GI_56799400-S	ILMN_287813	SNCA	NM_019169.2	NM_019169.2		29219	56799400	NM_019169.2	Snca	NP_062042.1	ILMN_1363385	0002650270	S	753	CCCGGTGCTCCCCTCTCACTACAGTGAATACATGGTAGCAGGCTCTTGTG	4	-	89614078-89614127	4q24	Rattus norvegicus synuclein, alpha (non A4 component of amyloid precursor) (Snca), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 1774] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The chemical reactions and pathways involving neutral lipids, lipids only soluble in solvents of very low polarity [goid 6638] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial membrane, the lipid bilayer surrounding a mitochondrion [goid 7006] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of glutamate [goid 14048] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 34599] [evidence ISS]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence IEA]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence ISS]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP, as it occurs in the mitochondrial inner membrane or chloroplast thylakoid membrane; as in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759) [goid 42775] [evidence ISS]; Any process that modulates the frequency or rate of macrophage activation [goid 43030] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IMP]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acyl-CoA [goid 50812] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; A process that modulates synaptic plasticity such that synapses are changed resulting in the increase in the rate, or frequency of synaptic transmission at the synapse [goid 60291] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid [goid 43274] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 50544] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15590652] [evidence IPI]	MGC105443	MGC105443
Rattus norvegicus	RefSeq	GI_62642153-S	ILMN_51331	RGD1311595	XM_219779.4	XM_219779.4		309307	109460020	XM_219779.4	RGD1311595	XP_219779.4	ILMN_1369917	0004050348	S	6588	ATGCGGAAACATACAGTTCGTGTGTGGGTGTGTGTCTTACTGTACCTTCC	1	-	233433824-233433873	1q52	PREDICTED: Rattus norvegicus similar to KIAA2026 protein (RGD1311595), mRNA.					
Rattus norvegicus	RefSeq	GI_6981531-S	ILMN_271169	SHBG	NM_012650.1	NM_012650.1		24775	6981531	NM_012650.1	Shbg	NP_036782.1	ILMN_1369448	0004070035	S	1136	GGGTACAAGGACAGAGACTGGACATAGACAAAGCCCTGAGCAGAAGCCAG	10	-	56432684-56432733	10q24	Rattus norvegicus sex hormone binding globulin (Shbg), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The phase of growth and gene expression that male germ cells undergo as they enter the spermatocyte stage. The cells grow in volume and transcribe most of the gene products needed for the morphological events that follow meiosis [goid 7285] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]	Abpa	Abpa
Rattus norvegicus	RefSeq	GI_47576630-S	ILMN_290233	OLR1681	NM_001001006.1	NM_001001006.1		405374	47576630	NM_001001006.1	Olr1681	NP_001001006.1	ILMN_1367923	0006510047	S	433	GTGTCCATTATGTGGCTGATTGGCATTTCCTATGCTGTCTCAGAGTCCAC	20	-	290146-290195	20p12	Rattus norvegicus olfactory receptor 1681 (Olr1681), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1681	Olr1681
Rattus norvegicus	RefSeq	GI_62656028-S	ILMN_275737	RGD1565950_PREDICTED	XM_001071965.1	XM_001071965.1		287899	109490646	XM_001071965.1	RGD1565950_predicted	XP_001071965.1	ILMN_1352450	0001090465	S	3851	TCCAGGAGCTCATTAACGCGGCGCAGAGAAAAGAGAAGCCGGGAAAGTTC				10q22	PREDICTED: Rattus norvegicus similar to A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2 (predicted) (RGD1565950_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654921-S	ILMN_62874	RGD1564591_PREDICTED	XM_576542.2	XM_576542.2		501125	109485952	XM_576542.2	RGD1564591_predicted	XP_576542.2	ILMN_1358638	0000870603	S	1304	TCCTACACTGATGCCAGCATCTTAGGCCTGATGGAGCTGTTGTGTCGCGC	9	-	35544817-35544866	9q21	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 6 (predicted) (RGD1564591_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654920-S	ILMN_62874	RGD1564591_PREDICTED	XM_576542.2	XM_576542.2		501125	109485952	XM_576542.2	RGD1564591_predicted	XP_576542.2	ILMN_1372571	0005910736	S	2039	GTGGCCCAAGGCTCTGGAAGAGAACTGTAGGAGGAGAAGAGTGGAGCCAG	9	-	35507056-35507105	9q21	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 6 (predicted) (RGD1564591_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083636-S	ILMN_288251	HES3	NM_022687.1	NM_022687.1		64628	12083636	NM_022687.1	Hes3	NP_073178.1	ILMN_1369263	0001400056	S	896	TGACTGCAGGGACTCTATCAATCGGTGGCCTGGTGGGGCTGCAGGGAAAT	5	-	169516983-169517032	5q36	Rattus norvegicus hairy and enhancer of split 3 (Drosophila) (Hes3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process by which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. Morphogenesis pertains to the creation of form. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 21555] [evidence ISS]; The process whose specific outcome is the progression of the oculomotor nerve over time, from its formation to the mature structure. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle [goid 21557] [evidence ISS]; The process whose specific outcome is the progression of the trochlear nerve over time, from its formation to the mature structure. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle [goid 21558] [evidence ISS]; The process by which the anatomical structure of the hindbrain is generated and organized. Morphogenesis pertains to the creation of form. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions [goid 21575] [evidence ISS]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process controlling the timing and/or rate at which a relatively unspecialized cell acquires features of a neuron [goid 60164] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577744-S	ILMN_301305	OLR1256	NM_001001086.1	NM_001001086.1		405977	47577744	NM_001001086.1	Olr1256	NP_001001086.1	ILMN_1374054	0000510270	S	756	CGGATCAAGCACATTTATGTATCTTCAGCCCTCCTCAACAGGGTCTATGG	8	+	40816687-40816736	8q22	Rattus norvegicus olfactory receptor 1256 (Olr1256), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1256	Olr1256
Rattus norvegicus	RefSeq	GI_62659419-S	ILMN_69801	FAM31B_PREDICTED	XM_222678.3	XM_222678.3		289051	62659419	XM_222678.3	Fam31b_predicted	XP_222678.3	ILMN_1370801	0004560736	S	1085	GGACGACATTGACTACAAGCCCACGGTTAAGGAGAACACTGAGAAGCCCT				13q13	PREDICTED: Rattus norvegicus family with sequence similarity 31, member B (predicted) (Fam31b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667237-S	ILMN_293824	GLA_MAPPED	XM_001068735.1	XM_001068735.1		363494	109512332	XM_001068735.1	Gla_mapped	XP_001068735.1	ILMN_1359658	0002510017	S	977	GAGGATGTAATTGCCATCAACCAAGACCCCTTGGGCAAGCAGGGGTACTG				Xq34	PREDICTED: Rattus norvegicus galactosidase, alpha (mapped) (Gla_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_57163990-S	ILMN_295072	CAPZA2	NM_001009180.2	NM_001009180.2		493810	75832146	NM_001009180.2	Capza2	NP_001009180.1	ILMN_1372330	0002260026	S	1434	GGCGTGGGAGATGGAGACTAGAGGGCGAGCATTTTCTACACCAGTCACGT	4	+	43328357-43328406	4q21	Rattus norvegicus capping protein (actin filament) muscle Z-line, alpha 2 (Capza2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments [goid 8290] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124519	MGC124519
Rattus norvegicus	RefSeq	GI_62638962-S	ILMN_264061	KPTN_PREDICTED	XM_001074187.1	XM_001074187.1		308107	109461292	XM_001074187.1	Kptn_predicted	XP_001074187.1	ILMN_1358639	0003450278	S	1273	TGACACGGCTTCGTCATCAAGTGGAGCAGAGGAAACATCAGCAGGGCCTT				1q21	PREDICTED: Rattus norvegicus kaptin (actin binding protein) (predicted) (Kptn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393592-S	ILMN_276941	IL1A	NM_017019.1	NM_017019.1		24493	8393592	NM_017019.1	Il1a	NP_058715.1	ILMN_1356880	0005290471	S	1623	CCACATCCGTGGAGCTCTCTTTACATTCTTGTCCTTAGGAGCCCTGCAGT	3	-	116913906-116913955	3q36	Rattus norvegicus interleukin 1 alpha (Il1a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]	Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]; Interacting selectively with a Type I interleukin-1 receptor [goid 5150] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	IL-1 alpha	IL-1 alpha
Rattus norvegicus	RefSeq	GI_41055864-S	ILMN_298760	MVP	NM_022715.2	NM_022715.2		64681	41055864	NM_022715.2	Mvp	NP_073206.2	ILMN_1366631	0006180050	S	2410	GGCGCAGCAGCTTGCCAATGTGGAGGCAAAGAAGTTCAAGGAGATGACAG	1	-	186165433-186165482	1q36	Rattus norvegicus major vault protein (Mvp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62078778-S	ILMN_282619	ORAI3	NM_001014024.1	NM_001014024.1		309000	62078778	NM_001014024.1	Orai3	NP_001014046.1	ILMN_1372045	0006840692	S	1562	GGGTTGGGTGAGTTTGAGGGGGAGAATTTAGCCCTTAGAATGCAGAGCTC	1	+	187059111-187059160	1q36	Rattus norvegicus ORAI calcium release-activated calcium modulator 3 (Orai3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62651104-S	ILMN_70120	SKIIP_PREDICTED	XM_234442.4	XM_234442.4		299219	109478553	XM_234442.4	Skiip_predicted	XP_234442.3	ILMN_1374340	0005050373	S	737	AGGAGCGGCTACCGGTGGAGGAAGGCCAGGTCAGTGTACGAAGCCTGTAC	6	-	111719528-111719577	6q31	PREDICTED: Rattus norvegicus SKI interacting protein (predicted) (Skiip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647262-S	ILMN_58579	LOC362362	XM_347044.2	XM_347044.2		362362	62647262	XM_347044.2	LOC362362	XP_347045.2	ILMN_1370227	0005900280	S	1113	GTGCTGGGAAGGGAGAGAACAAAGAGAAGGGCTGCTACATACCTGCCTCC					PREDICTED: Rattus norvegicus hypothetical LOC362362 (LOC362362), mRNA.					
Rattus norvegicus	RefSeq	GI_58037556-S	ILMN_268807	ST3GAL4	NM_203337.2	NM_203337.2		363040	58037556	NM_203337.2	St3gal4	NP_976082.1	ILMN_1361562	0004570435	S	1902	CAGAAAGACGGAGGCATCAAGAGTGGGAGGGTGTCCTCCAGAGAGGGGTT	8	-	34846060-34846109	8q21	Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 4 (St3gal4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	siat4c	siat4c
Rattus norvegicus	RefSeq	GI_62646585-S	ILMN_289059	SQRDL	XM_001077275.1	XM_001077275.1		362292	109470560	XM_001077275.1	Sqrdl	XP_001077275.1	ILMN_1363347	0004570286	S	179	GGGGAAGTGGTGGGATCACCATGGCCACTCGCATGAAGAGGAGAGTTGGA					PREDICTED: Rattus norvegicus sulfide quinone reductase-like (yeast), transcript variant 1 (Sqrdl), mRNA.					
Rattus norvegicus	RefSeq	GI_34852865-S	ILMN_264031	HS3ST5_PREDICTED	XM_228219.2	XM_228219.2		294449	34852865	XM_228219.2	Hs3st5_predicted	XP_228219.2	ILMN_1351524	0004670114	S	735	TCCCATTGAACAGTTTCACATCGTGGACGGGGACCGTCTCATCACCGAGC	20	+	41021624-41021673	20q12	PREDICTED: Rattus norvegicus heparan sulfate (glucosamine) 3-O-sulfotransferase 5 (predicted) (Hs3st5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667290-S	ILMN_54490	LOC501627	XM_577025.1	XM_577025.1		501627	62667290	XM_577025.1	LOC501627	XP_577025.1	ILMN_1354885	0001770600	S	2694	GAACCCGGGACAACATACGTGCAAGTCATGGCAATTCTTGCTGCGTTCTG					PREDICTED: Rattus norvegicus similar to LRRGT00088 (LOC501627), mRNA.					
Rattus norvegicus	RefSeq	GI_57528163-S	ILMN_266647	SAR1B	NM_001009622.1	NM_001009622.1		287276	57528163	NM_001009622.1	Sar1b	NP_001009622.1	ILMN_1357717	0000780333	S	630	TAAAAAGGCAGGGCTACGGGGAAGGCTTCCGCTGGATGGCGCAGTACATC	10	+	37313072-37313121	10q22	Rattus norvegicus SAR1 gene homolog B (S. cerevisiae) (Sar1b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Sara2; SARA1B	Sara2; SARA1B
Rattus norvegicus	RefSeq	GI_62648809-S	ILMN_264894	B4GALT1_MAPPED	XM_001058948.1	XM_001058948.1		24390	109476263	XM_001058948.1	B4galt1_mapped	XP_001058948.1	ILMN_1372751	0003610167	S	1220	GTCTATATCACGCCCAAATGCTGTGGTAGGCAGGTGTCGCATGATCCGGC				5q22	PREDICTED: Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 (mapped) (B4galt1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_54020671-S	ILMN_296365	ICMT	NM_133310.1	NM_133310.1		170818	54020671	NM_133310.1	Icmt	NP_579844.1	ILMN_1363862	0003710136	S	1683	TCGAGCGTCCAGGTCCAGCTTTCACGTGGCAACAGGTAGCACAGACCCTT	5	+	169533450-169533499	5q36	Rattus norvegicus isoprenylcysteine carboxyl methyltransferase (Icmt), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence ISS]; The methylation of the C-terminal amino acid of a protein [goid 6481] [evidence ISS]; The methylation of the C-terminal amino acid of a protein [goid 6481] [evidence IMP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IMP]; The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt [goid 46499] [evidence IMP]; Any process that modulates the frequency, rate or extent of Ras protein signal transduction [goid 46578] [evidence ISS]	Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester [goid 4671] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester [goid 4671] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester [goid 4671] [evidence IMP];  [goid 8140] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC95322; fcmt	MGC95322; fcmt
Rattus norvegicus	RefSeq	GI_62666174	ILMN_61739	LOC502437	XM_577918.1	XM_577918.1		502437	62666174	XM_577918.1	LOC502437	XP_577918.1	ILMN_1650293	0004070520	S	248	GTCCTTGGACGATCTGTCTGCTGGACGGAATCCCGGCGCAGGAAGACGGT					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502437), mRNA.					
Rattus norvegicus	RefSeq	GI_47577360-S	ILMN_270351	OLR429	NM_001000395.1	NM_001000395.1		296690	47577360	NM_001000395.1	Olr429	NP_001000395.1	ILMN_1359248	0006450576	S	770	CAGTGTATATTCGCCCCTCTTCCACCTACTCAGTGACAAAGGACCGAGTG	3	+	16763501-16763550	3q11	Rattus norvegicus olfactory receptor 429 (Olr429), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr429	Olr429
Rattus norvegicus	RefSeq	GI_62651792-S	ILMN_59807	CASP14_PREDICTED	XM_234878.4	XM_234878.4		299587	109480289	XM_234878.4	Casp14_predicted	XP_234878.4	ILMN_1362320	0005860014	S	406	TGCAGAGGAGAGCACAGAGACCCCGGTGAGGAACTACCTGGAGATGAACT	7	+	12488074-12488083:12488995-12489034	7q11	PREDICTED: Rattus norvegicus caspase 14 (predicted) (Casp14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649131-S	ILMN_294992	TYRP1_MAPPED	XM_001059355.1	XM_001059355.1		298182	109476608	XM_001059355.1	Tyrp1_mapped	XP_001059355.1	ILMN_1356105	0004280471	S	1762	GCACCAAGAATGAAGCCAACCAGCCTCTCCTCACCGATCACTACCAACGC				5q31	PREDICTED: Rattus norvegicus tyrosinase-related protein 1 (mapped), transcript variant 1 (Tyrp1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62659128-S	ILMN_48037	LOC498202	XM_573420.1	XM_573420.1		498202	62659128	XM_573420.1	LOC498202	XP_573420.1	ILMN_1374092	0000110242	S	51	CCTGCACAGCCAGATACAGATGGAGAAGAGTGTCATGAAGAAGACATTGG					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498202), mRNA.					
Rattus norvegicus	RefSeq	GI_62660910-S	ILMN_61903	LOC364205	XM_344266.2	XM_344266.2		364205	62660910	XM_344266.2	LOC364205	XP_344267.2	ILMN_1371345	0003170458	S	947	CTGCCAGCAGAGGGAACAGTACTTCAACTGCATCCCCGTGGCCTTGAATG				14q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630050E13 gene (predicted) (LOC364205), mRNA.					
Rattus norvegicus	RefSeq	GI_62664076-S	ILMN_59142	LOC291773	XM_226146.3	XM_226146.3		291773	62664076	XM_226146.3	LOC291773	XP_226146.3	ILMN_1358957	0000770411	S	2408	AGACAACCCTTCTGCTTCCGGGACTTGCAGCCTAACAGCCACCAGACCAC					PREDICTED: Rattus norvegicus similar to Transcription initiation factor TFIID 105 kDa subunit (TAFII-105) (TAFII105) (LOC291773), mRNA.					
Rattus norvegicus	RefSeq	GI_62659944-S	ILMN_296283	RGD1563431_PREDICTED	XM_001063124.1	XM_001063124.1		501876	109499183	XM_001063124.1	RGD1563431_predicted	XP_001063124.1	ILMN_2040666	0007330056	S	296	AACATTTTGAACTAGGAGGTGACAAGAAGAGAAAGGGCCAAGTGATCCAG					PREDICTED: Rattus norvegicus similar to large subunit ribosomal protein L36a (predicted) (RGD1563431_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666066-S	ILMN_273070	KPNA5	NM_001025113.1	NM_001025113.1		294392	68341940	NM_001025113.1	Kpna5	NP_001020284.1	ILMN_1374811	0004480465	S	1518	GGATGACCCTAGTCTCGTTCCTCAGGTGGATGAGCAGCAGCGGCAGTTTC	20	+	30197386-30197435	20q11	Rattus norvegicus karyopherin alpha 5 (importin alpha 6) (Kpna5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	Ipoa6	Ipoa6
Rattus norvegicus	RefSeq	GI_40385888-S	ILMN_269797	DOXL1	NM_199233.1	NM_199233.1		312316	40385888	NM_199233.1	Doxl1	NP_954703.1	ILMN_1372891	0002340131	S	2100	CTAGAGACACCCAGGTCTGACAACCACAATGACATCGGGCACTGCATCCC	4	+	77028672-77028675:77028676-77028721	4q24	Rattus norvegicus diamine oxidase-like protein 1 (Doxl1), mRNA.		The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IEA]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577828-S	ILMN_293915	OLR120	NM_001000154.1	NM_001000154.1		293256	47577828	NM_001000154.1	Olr120	NP_001000154.1	ILMN_1364365	0000670273	S	333	CATGGAGTCCTCCGTTCTACTCGCCATGTCCTTTGACTGCTACATTGCCA	1	-	161441050-161441099	1q32	Rattus norvegicus olfactory receptor 120 (Olr120), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr120	Olr120
Rattus norvegicus	RefSeq	GI_47576884-S	ILMN_299559	OLR223	NM_001000202.1	NM_001000202.1		293369	47576884	NM_001000202.1	Olr223	NP_001000202.1	ILMN_1375065	0004760619	S	738	GGTCATCTTCTACACAGCTGTGATCTTCATGTACGTCCGACCTCGGGCCA	1	-	164225449-164225498	1q33	Rattus norvegicus olfactory receptor 223 (Olr223), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr223	Olr223
Rattus norvegicus	RefSeq	GI_16758613-S	ILMN_289974	MAPK8IP1	NM_053777.1	NM_053777.1		116457	16758613	NM_053777.1	Mapk8ip1	NP_446229.1	ILMN_1361763	0004560309	S	2720	CTCATGCTGAGCCCAAGCACCTCCGAAGGACTTTCCAGTAAGGAAATGGC	3	-	76781726-76781775	3q24	Rattus norvegicus mitogen-activated protein kinase 8 interacting protein 1 (Mapk8ip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 9442013] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process of introducing a phosphate group into a JUN protein [goid 7258] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of JUN kinase activity [goid 43508] [evidence IMP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46329] [evidence IMP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]	Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IMP]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence ISS]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family [goid 8432] [evidence IPI]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	Mapk8ip1; Jip-1	Mapk8ip1; Jip-1
Rattus norvegicus	RefSeq	GI_47576836	ILMN_278297	OLR821	NM_001000842.1	NM_001000842.1		405131	47576836	NM_001000842.1	Olr821	NP_001000842.1	ILMN_1651008	0005220736	S	369	TGCTATCTGCCACCCGCTACACTACTCTGTCATCATGAACTGGAGAGCGT	4	+	70988683-70988732	4q23	Rattus norvegicus olfactory receptor 821 (Olr821), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr821	Olr821
Rattus norvegicus	RefSeq	GI_22024395-S	ILMN_266811	SOCS1	NM_145879.1	NM_145879.1		252971	22024395	NM_145879.1	Socs1	NP_665886.1	ILMN_1371295	0004570537	S	346	CTCAGCGTGAAGATGGCTTCGGGCCCCACGAGCATTCGTGTGCACTTCCA	10	+	4820316-4820365	10q11	Rattus norvegicus suppressor of cytokine signaling 1 (Socs1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42518] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42518] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence ISS]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]	Socs-1; Cish1	Socs-1; Cish1
Rattus norvegicus	RefSeq	GI_47576674-S	ILMN_274903	OLR1699	NM_001001112.1	NM_001001112.1		406011	47576674	NM_001001112.1	Olr1699	NP_001001112.1	ILMN_1367357	0002340731	S	252	ACCCAAGATGCTGCAGAGTCTTGTGAGTGAGGTCCGAGAGATCTCTCAGG	20	-	738785-738834	20p12	Rattus norvegicus olfactory receptor 1699 (Olr1699), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	SCR D-9; Olr1699	SCR D-9; Olr1699
Rattus norvegicus	RefSeq	GI_62651885-S	ILMN_64538	CKAP4_PREDICTED	XM_343189.3	XM_343189.3		362859	109480397	XM_343189.3	Ckap4_predicted	XP_343190.1	ILMN_1370644	0003840044	S	2572	CGTGTGCTGCATGTGTTCTCACTGTACCCTCGCCCCTTTGAGAGGTATTG	7	+	21368229-21368278	7q13	PREDICTED: Rattus norvegicus cytoskeleton-associated protein 4 (predicted) (Ckap4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576120-S	ILMN_278476	OLR1389	NM_001000000.1	NM_001000000.1		287240	47576120	NM_001000000.1	Olr1389	NP_001000000.1	ILMN_1368984	0003850129	S	474	CCAGACAGGTCTCATGATGGCCATGCCTCTCTGCAGGTATCGGCTGAATC	10	+	34765947-34765996	10q21	Rattus norvegicus olfactory receptor 1389 (Olr1389), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1389	Olr1389
Rattus norvegicus	RefSeq	GI_62655171-S	ILMN_70220	LOC367289	XM_346058.3	XM_346058.3		367289	109486119	XM_346058.3	LOC367289	XP_346059.3	ILMN_1367936	0002850180	S	2464	AATACTTACTCCACGCTGGAGGATGGTTGTTCTTCAGCCCCTTGATGAAC	9	-	65495122-65495157:65496370-65496383	9q32	PREDICTED: Rattus norvegicus similar to CG4699-PA, isoform A (LOC367289), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655169-S	ILMN_70220	LOC367289	XM_346058.3	XM_346058.3		367289	109486119	XM_346058.3	LOC367289	XP_346059.3	ILMN_1357898	0003060136	S	4701	AGCAGTTTCTGGTGGGCACTGCTGCTCTGACTACAAACAGAGCTCCTGAG	9	-	65489720-65489769	9q32	PREDICTED: Rattus norvegicus similar to CG4699-PA, isoform A (LOC367289), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50657399-S	ILMN_302015	CAPN11	NM_001002806.2	NM_001002806.2		408218	76563949	NM_001002806.2	Capn11	NP_001002806.2	ILMN_1370111	0006110195	S	1832	CGCCGTATGGTCAACCTCATGGACAAAGACGATTCTGGAAAGCTGGGGCT	9	+	10962646-10962669:10962940-10962965	9q12	Rattus norvegicus calpain 11 (Capn11), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_38371731-S	ILMN_287616	CYSS	NM_198685.1	NM_198685.1		296234	38371731	NM_198685.1	Cyss	NP_941958.1	ILMN_1368824	0003440452	S	93	GGGTGGCATAGAGAAGTCTAGCATGGAGGAGGAAGGAGCCTCAGAAGCAT	3	-	138830821-138830870	3q41	Rattus norvegicus cystatin S (Cyss), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		 [goid 4869] [evidence TAS];  [goid 4869] [evidence IEA]	Cst4	Cst4
Rattus norvegicus	RefSeq	GI_62652149-S	ILMN_54542	LOC503132	XM_578653.1	XM_578653.1		503132	62652149	XM_578653.1	LOC503132	XP_578653.1	ILMN_1370690	0005290402	S	329	GGTCCTATGGATGCTCCAGAAGGGTGGTGATTCCTGTGATCTCAACTGTG					PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC503132), mRNA.					
Rattus norvegicus	RefSeq	GI_62648315-S	ILMN_284096	RGD1304592_PREDICTED	XM_001073101.1	XM_001073101.1		362461	109474444	XM_001073101.1	RGD1304592_predicted	XP_001073101.1	ILMN_1348920	0001770086	S	3254	GTGTCTCCATTGTTTGTCAGCGTCTTCTCAGACCAGAGGGCCCAGCGAGG				4q44	PREDICTED: Rattus norvegicus similar to KIAA0528 protein (predicted) (RGD1304592_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981559-S	ILMN_276551	SLC9A2	NM_012653.1	NM_012653.1		24783	6981559	NM_012653.1	Slc9a2	NP_036785.1	ILMN_1360608	0000510133	S	3515	CCGCCTGGGTTTTATGTGTGTGGTGATGGGAGGAAAGGGAGGTGGTTCCT	9	+	39915822-39915871	9q21	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 2 (Slc9a2), mRNA.	The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Nhe2	Nhe2
Rattus norvegicus	RefSeq	GI_62652027-S	ILMN_48715	RGD1564046_PREDICTED	XM_576213.2	XM_576213.2		500823	109480473	XM_576213.2	RGD1564046_predicted	XP_576213.2	ILMN_1371517	0006980594	S	994	CTGGTCAAAGTGGAGTCTCGCCTGGTGGAGCTGAGCGACCTCATTGAATC	7	+	30641348-30641397	7q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933417K05 gene (predicted) (RGD1564046_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654512-S	ILMN_60816	GUP1_PREDICTED	XM_217299.4	XM_217299.4		301073	109484092	XM_217299.4	Gup1_predicted	XP_217299.3	ILMN_1375067	0002230452	S	1701	CTGGAGGAAGAGCAGAGGCAGGACAAAGAGAAGCTGGAGTAGAGGTGGGG	8	+	127153131-127153172:127153173-127153180	8q32	PREDICTED: Rattus norvegicus Gup1, glycerol uptake/transporter homolog (yeast) (predicted) (Gup1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666973-S	ILMN_58796	LOC302645	XM_228895.2	XM_228895.2		302645	62666973	XM_228895.2	LOC302645	XP_228895.2	ILMN_1356338	0002190465	S	141	GTCAGGTCTCAAGGAACTGAGATCCTGGGAAGGGGGAGTTTGACTGGAGA				Xq22	PREDICTED: Rattus norvegicus similar to Magea5 (LOC302645), mRNA.					
Rattus norvegicus	RefSeq	GI_62644202-S	ILMN_64351	RGD1310037_PREDICTED	XM_345273.3	XM_345273.3		365903	109465457	XM_345273.3	RGD1310037_predicted	XP_345274.3	ILMN_1367554	0003870746	S	1393	CTGAGGTTATTCGTGGGACCTGGGGGAAGTACAACCTTCGGCAGCCACCA	2	-	204575783-204575832	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C230093N12 (predicted) (RGD1310037_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576782-S	ILMN_269553	OLR831	NM_001000899.1	NM_001000899.1		405209	47576782	NM_001000899.1	Olr831	NP_001000899.1	ILMN_1353125	0006370022	S	315	CGGGGCATTTGGTTTTCTTCTTATAGCTGTGATGTCAGTGGACAGGTGTG	4	-	152905053-152905102	4q42	Rattus norvegicus olfactory receptor 831 (Olr831), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr831	Olr831
Rattus norvegicus	RefSeq	GI_56799410-S	ILMN_290441	PTGDS2	NM_031644.2	NM_031644.2		58962	56799410	NM_031644.2	Ptgds2	NP_113832.1	ILMN_1371397	0001580707	S	828	GCAGCACCACACTTTTGGTCTTAAAGCCCGACCTGTTGGGCATCTACCCC	4	-	94611904-94611953	4q31	Rattus norvegicus prostaglandin D2 synthase 2, hematopoietic (Ptgds2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence TAS]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence ISS]	Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence TAS]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence IEA]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC105397	MGC105397
Rattus norvegicus	RefSeq	GI_62661704-S	ILMN_56787	LGI3_PREDICTED	XM_224337.4	XM_224337.4		306013	109501862	XM_224337.4	Lgi3_predicted	XP_224337.4	ILMN_1367471	0002450100	S	2940	GGCAAGAATCCTGGGAGAGCCTGTATGGGTGCCAGGAACGTGTTGGTAGC	15	+	50938976-50939025	15p11	PREDICTED: Rattus norvegicus leucine-rich repeat LGI family, member 3 (predicted) (Lgi3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638648-S	ILMN_60051	LOC499045	XM_579913.1	XM_579913.1		499045	62638648	XM_579913.1	LOC499045	XP_579913.1	ILMN_1355856	0001580538	S	684	TCTCAGTGCCTACACTTTCAAAGGACCTTCACTGTCACAGAACCGGCACT					PREDICTED: Rattus norvegicus LOC499045 (LOC499045), mRNA.					
Rattus norvegicus	RefSeq	GI_56090623-S	ILMN_289947	C1QTNF1	NM_001007675.1	NM_001007675.1		303701	56090623	NM_001007675.1	C1qtnf1	NP_001007676.1	ILMN_1365038	0004120300	S	1315	CTGGCTGCCGATGGATGAGATCATTGGGCGGGGAGACTGTGTGGACATTG	10	+	108451879-108451928	10q32.3	Rattus norvegicus C1q and tumor necrosis factor related protein 1 (C1qtnf1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]		MGC94614	MGC94614
Rattus norvegicus	RefSeq	GI_62663382-S	ILMN_51382	RGD1564907_PREDICTED	XM_579866.2	XM_579866.2		498723	109504796	XM_579866.2	RGD1564907_predicted	XP_579866.2	ILMN_1365993	0003870131	S	680	CTCCAGAGACAGGGTGTTGAGGAAGGAGAGGTGTCTACATAAGCTCCCCC	17	+	26348638-26348687	17p12	PREDICTED: Rattus norvegicus RGD1564907 (predicted) (RGD1564907_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649199-S	ILMN_268298	RGD1564897_PREDICTED	XM_578467.1	XM_578467.1		502962	62649199	XM_578467.1	RGD1564897_predicted	XP_578467.1	ILMN_1363998	0001740408	S	92	ACCTCAGAAACAAGAGAGCCTTCACACTCCTGGCACAAATGAAGAGACTC	5	-	108085317-108085366	5q32	PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (predicted) (RGD1564897_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661908-S	ILMN_67784	LOC364495	XM_344472.2	XM_344472.2		364495	62661908	XM_344472.2	LOC364495	XP_344473.2	ILMN_1369831	0002640731	S	29	TGAAAATCTACTGTGCCTTCCTCCTCGGGTGAGAGGAGATGGGGTTGAGC				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain - mouse (LOC364495), mRNA.					
Rattus norvegicus	RefSeq	GI_62659745-S	ILMN_285279	VANGL2_PREDICTED	XM_001056450.1	XM_001056450.1		289229	109499062	XM_001056450.1	Vangl2_predicted	XP_001056450.1	ILMN_1351962	0002640538	S	4503	GCTAAGCACACCCGGAGATGGGGGTACCTCTGGTCTCACCGTCAGGCTGT				13q24	PREDICTED: Rattus norvegicus vang-like 2 (van gogh, Drosophila) (predicted) (Vangl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981281-S	ILMN_291868	NPR3	NM_012868.1	NM_012868.1		25339	6981281	NM_012868.1	Npr3	NP_037000.1	ILMN_1349272	0001500079	S	1430	GGCCTAGAAGAATCAGCAGTGACAGGAATTGTTGTGGGGGCCCTACTAGG	2	-	61279470-61279519	2q16	Rattus norvegicus natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) (Npr3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach [goid 30157] [evidence IMP]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA];  [goid 16941] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA]	ANP-CR; NPRC	ANP-CR; NPRC
Rattus norvegicus	RefSeq	GI_62652446-S	ILMN_69695	LOC299949	XM_216928.4	XM_216928.4		299949	109480739	XM_216928.4	LOC299949	XP_216928.4	ILMN_1365019	0006660484	S	3177	TCCGATCTTCTCAAGAATGTGCGAGATCTTCGCAGGGGACTCACAGCCCG	7	+	94676667-94676716	7q33	PREDICTED: Rattus norvegicus similar to WD-repeat protein 67 (Protein 4-B-3) (LOC299949), mRNA.					
Rattus norvegicus	RefSeq	GI_62654041-S	ILMN_292040	ELOVL4_PREDICTED	XM_001062735.1	XM_001062735.1		315851	109485075	XM_001062735.1	Elovl4_predicted	XP_001062735.1	ILMN_1353380	0001410450	S	2864	GCAGCACATGAAATAGTACGGTCTAAGAGGATCACCACGTTGTCTTTCGC				8q31	PREDICTED: Rattus norvegicus elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 (predicted) (Elovl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657436-S	ILMN_63663	LOC501749	XM_577150.1	XM_577150.1		501749	62657436	XM_577150.1	LOC501749	XP_577150.1	ILMN_1351624	0005890053	S	468	TCCACTGTGCTAGCCTTCCTGCCCTCCAAGCACCACGAAGAAGAGGCGCA					PREDICTED: Rattus norvegicus similar to thymosin beta10,Arg (LOC501749), mRNA.					
Rattus norvegicus	RefSeq	GI_62644296-S	ILMN_264414	TRAM1L1_PREDICTED	XM_001075640.1	XM_001075640.1		310846	109467572	XM_001075640.1	Tram1l1_predicted	XP_001075640.1	ILMN_1352607	0002190546	S	1314	GCGAATCTTCATGTCTGTGGGAGGAAGAGACGGTCCAGGTCGAGAAAAGG				2q42	PREDICTED: Rattus norvegicus translocation associated membrane protein 1-like 1 (predicted) (Tram1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651549-S	ILMN_69426	LOC299466	XM_234744.3	XM_234744.3		299466	62651549	XM_234744.3	LOC299466	XP_234744.3	ILMN_1357861	0002650072	S	269	GACTGTGTTCAAAATAGTTTCAGCTCCTAAGAGTCAGCCAGGTCCTGAGC					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC299466), mRNA.					
Rattus norvegicus	RefSeq	GI_62718711-S	ILMN_55539	LOC367363	XM_346105.2	XM_346105.2		367363	62718711	XM_346105.2	LOC367363	XP_346106.2	ILMN_1373911	0005290164	S	78	GGCCTAGATGGATGGGCAAGTAGTTCTGGGAAGATTGCTGACTGTAGCCA					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367363), mRNA.					
Rattus norvegicus	RefSeq	GI_62647398-S	ILMN_65056	LOC362382	XM_342706.2	XM_342706.2		362382	62647398	XM_342706.2	LOC362382	XP_342707.2	ILMN_1359542	0006400280	S	876	CAAGCCATAACAAAAACCCCCATGGGAAGCAGAAACCAGATGTTGGGCTG				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin 4G6 light chain variable region (LOC362382), mRNA.					
Rattus norvegicus	RefSeq	GI_62652147-S	ILMN_54450	SPIC_PREDICTED	XM_235019.4	XM_235019.4		314711	109480437	XM_235019.4	Spic_predicted	XP_235019.3	ILMN_1359198	0005900338	S	784	GGCAACCGGAAACCCATGACTTACCAGAAGATGGCCAGAGCCCTGAGGAA	7	-	25354971-25355020	7q13	PREDICTED: Rattus norvegicus Spi-C transcription factor (Spi-1/PU.1 related) (predicted) (Spic_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394167-S	ILMN_281293	CALM2	NM_017326.1	NM_017326.1		50663	8394167	NM_017326.1	Calm2	NP_059022.1	ILMN_1370405	0003710021	S	826	GGAACCGTCGGCATGTTGCTGTTGAAGTGTGGAGTTGTGAGCGTGGACTG	15	-	64161876-64161925	15q12	Rattus norvegicus calmodulin 2 (Calm2), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells [goid 32465] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence IEA]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647751-S	ILMN_58837	LOC500245	XM_575595.1	XM_575595.1		500245	62647751	XM_575595.1	LOC500245	XP_575595.1	ILMN_1353327	0006770411	S	1390	CGAAGGAATGGCCGTGTCTGAATGTGGCTGTAGATAGGGGAGGAGAGGCG				4q34	PREDICTED: Rattus norvegicus similar to bone morphogenetic protein 10 (LOC500245), mRNA.					
Rattus norvegicus	RefSeq	GI_62647217-S	ILMN_56294	LOC297077	XM_216137.3	XM_216137.3		297077	62647217	XM_216137.3	LOC297077	XP_216137.3	ILMN_1350379	0000360093	S	1387	TGTAAACACCTGACTGGGTGTGCAGGGTGAGGGGGTAGGGTCTGTCTCCT				4q24	PREDICTED: Rattus norvegicus hypothetical LOC297077 (predicted) (LOC297077), mRNA.					
Rattus norvegicus	RefSeq	GI_62651180-S	ILMN_266311	RGD1309028_PREDICTED	XR_008354.1	XR_008354.1		299265	109479889	XR_008354.1	RGD1309028_predicted		ILMN_1369738	0005570332	S	787	GATGTCTGGGGTATCCCTGGTAGGCAGTCTTGACGCTTGGAGCTACTGCC				6q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A830059I20 (predicted) (RGD1309028_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981283-S	ILMN_265899	NPY5R	NM_012869.1	NM_012869.1		25340	6981283	NM_012869.1	Npy5r	NP_037001.1	ILMN_1374777	0003870095	S	1546	GAGAGCCCTTATCCACTGCCTACACATGTCATGATTCTCTCTGTGCACCA	16	+	24772264-24772297:24772298-24772313	16p14	Rattus norvegicus neuropeptide Y receptor Y5 (Npy5r), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response [goid 2675] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process which controls the timing of the type of sexual cycle seen in female mammals [goid 60112] [evidence IMP]	Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence ISS]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IDA]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IEA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence ISS]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IDA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence ISS]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IDA]	NPYR5	NPYR5
Rattus norvegicus	RefSeq	GI_31542441-S	ILMN_283237	CYP1A2	NM_012541.2	NM_012541.2		24297	31542441	NM_012541.2	Cyp1a2	NP_036673.2	ILMN_1350207	0002320300	S	1469	CGTGAAGGTGGACCTGACACCCAGCTATGGGCTGACCATGAAGCCCAGAA				8q24	Rattus norvegicus cytochrome P450, family 1, subfamily a, polypeptide 2 (Cyp1a2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence ISS]; The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6778] [evidence ISS]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 9404] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence ISS]; The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern [goid 18894] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the removal of a methyl group from a substrate [goid 32451] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	RATCYPD45; P-450d; CYPD45	RATCYPD45; P-450d; CYPD45
Rattus norvegicus	RefSeq	GI_62648753-S	ILMN_264441	RGD1562265_PREDICTED	XM_001062203.1	XM_001062203.1		313283	109476257	XM_001062203.1	RGD1562265_predicted	XP_001062203.1	ILMN_1367175	0000730128	S	11	CACTGCCATGGCTGAGGGAGACATAGCTGCTGGAGGTGTAATAGACATCA				5q21	PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (predicted) (RGD1562265_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869565-S	ILMN_270853	LOC498468	XM_573725.1	XM_573725.1		498468	62661177	XM_573725.1	LOC498468	XP_573725.2	ILMN_1369864	0002100309	S	807	TCAGGTCTGAACACTCCAGCAGACGCTTGCCCGTGGCCCAGAGCAGGACT	15	+	19673750-19673753:19677966-19678011	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498468), mRNA.					
Rattus norvegicus	RefSeq	GI_62662545-S	ILMN_57517	LOC502071	XM_577503.1	XM_577503.1		502071	62662545	XM_577503.1	LOC502071	XP_577503.1	ILMN_1361405	0003190333	S	480	AAAGACTCAGTTACCTCGTTGTCTGAAGCCAGAATCCTGCAGCTGAGAAG					PREDICTED: Rattus norvegicus similar to protease (LOC502071), mRNA.					
Rattus norvegicus	RefSeq	GI_62718233-S	ILMN_274515	LOC689362	XM_001070518.1	XM_001070518.1		689362	109513332	XM_001070518.1	LOC689362	XP_001070518.1	ILMN_1360775	0004200673	S	409	CTCCTGATGGAGAACACATGTAGGAAGAAGTTGGTCCCACTGAAACAGGG	Un|NW_047878.1	-	379262-379311		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC689362), mRNA.					
Rattus norvegicus	RefSeq	GI_62663907-S	ILMN_267758	SUV39H2_PREDICTED	XM_001066854.1	XM_001066854.1		364785	109506089	XM_001066854.1	Suv39h2_predicted	XP_001066854.1	ILMN_1353330	0004150398	S	1216	GTGAAGAGGCTGAGAGACGGGGACAGCTCTATGACAACAAAGGGATCACC				17q12.3	PREDICTED: Rattus norvegicus suppressor of variegation 3-9 homolog 2 (Drosophila) (predicted) (Suv39h2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649296-S	ILMN_67582	LOC362551	XM_342871.2	XM_342871.2		362551	62649296	XM_342871.2	LOC362551	XP_342872.2	ILMN_1363167	0002450403	S	2683	GATTGGTTGAGGGAGGGCAGGACACACTTGTGCTATGGTGTGCAGTTGGC				5q33	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10770 (predicted) (LOC362551), mRNA.					
Rattus norvegicus	RefSeq	GI_62718500-S	ILMN_64804	LOC503360	XM_578899.1	XM_578899.1		503360	62718500	XM_578899.1	LOC503360	XP_578899.1	ILMN_1373889	0000050025	S	338	TGAGCCGATGACTGAACACAGGCTTTGGGGCCGAGATACTTCTGTACAGT					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503360), mRNA.					
Rattus norvegicus	RefSeq	GI_13540702-S	ILMN_270493	PDE1A	NM_030871.1	NM_030871.1		81529	13540702	NM_030871.1	Pde1a	NP_110498.1	ILMN_1373026	0001240193	S	1603	GCAGAACAAGGAGAGGTGGAAAGAGTTGGCTGCCCAAGGCGAACTTGATC	3	-	62650242-62650291	3q24	Rattus norvegicus phosphodiesterase 1A, calmodulin-dependent (Pde1a), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]	3-RACEclone8phosphodiesterase1A; 3'-RACEclone8phosphodiesterase1A	3-RACEclone8phosphodiesterase1A; 3'-RACEclone8phosphodiesterase1A
Rattus norvegicus	RefSeq	GI_62664336-S	ILMN_286096	STK32A_PREDICTED	XM_344677.2	XM_344677.2		364858	62664336	XM_344677.2	Stk32a_predicted	XP_344678.2	ILMN_1367886	0004200440	S	1549	GCTTCTGAGTCTTTGGGGGACAGTGCTTGGCACCTGGCGGAAAACTCCTG	18	+	36611252-36611301	18p11	PREDICTED: Rattus norvegicus serine/threonine kinase 32A (predicted) (Stk32a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424157-S	ILMN_277191	SVS5	NM_133516.1	NM_133516.1		171027	19424157	NM_133516.1	Svs5	NP_598200.1	ILMN_1362112	0005550427	S	412	TGAAGACTTGAGCCAATAGGCAGGTTGTCCTCGTTCCCTGGGTGTCACTG	3	+	155265990-155266012:155266567-155266593	3q42	Rattus norvegicus seminal vesicle secretory protein 5 (Svs5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_27661979-S	ILMN_279575	RGD1564247_PREDICTED	XM_001058612.1	XM_001058612.1		499574	109466361	XM_001058612.1	RGD1564247_predicted	XP_001058612.1	ILMN_1360940	0006110020	S	1932	CATGCCTCGAGTGCGGAAGAGGATCTATAAGGAGCTGTGTGAGTGCCGGC				2q24	PREDICTED: Rattus norvegicus similar to SUMO/sentrin specific protease 5 (predicted) (RGD1564247_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658018-S	ILMN_279575	RGD1564247_PREDICTED	XM_001058612.1	XM_001058612.1		499574	109466361	XM_001058612.1	RGD1564247_predicted	XP_001058612.1	ILMN_1355600	0001400736	S	1997	CACTCAGCAGGGACTCCAGAAGGCGCCATGTTGGAGCAGATGGTTTGTTA				2q24	PREDICTED: Rattus norvegicus similar to SUMO/sentrin specific protease 5 (predicted) (RGD1564247_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663326-S	ILMN_289805	PHF2_PREDICTED	XM_001056853.1	XM_001056853.1		306814	109505557	XM_001056853.1	Phf2_predicted	XP_001056853.1	ILMN_1355601	0006100400	S	3209	GGCGGCCTTCTGCATCATCCCCCAACAACACTGCTGCCAAAGGAAAACGT				17p14	PREDICTED: Rattus norvegicus PHD finger protein 2 (predicted) (Phf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254729-S	ILMN_267217	STIP1	NM_138911.2	NM_138911.2		192277	40254729	NM_138911.2	Stip1	NP_620266.1	ILMN_1362703	0003990487	S	1806	TACATGCCTACAAGGAAGACAGACTCATCCAGTGCCACCTCGGGCCCTCC	1	-	209693663-209693712	1q43	Rattus norvegicus stress-induced phosphoprotein 1 (Stip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51854244-S	ILMN_278509	TXNDC8	NM_001004092.1	NM_001004092.1		362525	51854244	NM_001004092.1	Txndc8	NP_001004092.1	ILMN_1364346	0007100722	S	235	GCATCCAAGTAGTGCCCACATTCCAGATGTTCAAGCACTCCCGAAAGGTC	5	-	75961024-75961031:75980764-75980805	5q24	Rattus norvegicus thioredoxin domain containing 8 (Txndc8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The formation of the acrosome from the spermatid Golgi [goid 1675] [evidence IPI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]		Sptrx3	Sptrx3
Rattus norvegicus	RefSeq	GI_62079172-S	ILMN_274490	ANKZF1	NM_001014219.1	NM_001014219.1		363255	62079172	NM_001014219.1	Ankzf1	NP_001014241.1	ILMN_1353060	0005130040	S	2560	TGGAAGATGGGCAGTGAAGGACACTCAGGAACTGGGGCAAAGACAGGGCC	9	+	74481328-74481377	9q33	Rattus norvegicus ankyrin repeat and zinc finger domain containing 1 (Ankzf1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16930812-S	ILMN_290054	AKAP12	NM_001033653.1	NM_001033653.1		83425	75905810	NM_001033653.1	Akap12	NP_001028825.1	ILMN_1370981	0000460239	S	4826	AACCAAAGAATCCCCAGACACCAACGGACCAAAGCTAACCGAGGAGGGCG	1	+	35065966-35066015	1p11	Rattus norvegicus A kinase (PRKA) anchor protein 12 (Akap12), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	AKAP12B; AKAP12G; AKAP12A	AKAP12B; AKAP12G; AKAP12A
Rattus norvegicus	RefSeq	GI_62666296-S	ILMN_67621	LOC499472	XM_579969.1	XM_579969.1		499472	62666296	XM_579969.1	LOC499472	XP_579969.1	ILMN_1375192	0002680014	S	1705	ACTGTCAAGATGGCAGCAGCGGGAGCAAGGAGGTGATGAACGTGCTGGTC					PREDICTED: Rattus norvegicus LOC499472 (LOC499472), mRNA.					
Rattus norvegicus	RefSeq	GI_62649949-S	ILMN_55650	ARHGEF19_PREDICTED	XM_342965.3	XM_342965.3		362648	109475748	XM_342965.3	Arhgef19_predicted	XP_342966.3	ILMN_1352810	0004060152	S	2931	CAGTCCTACTGTGTGTCCTCTGTCTGCCCGGGACTGTGAGCCTATGGCTT	5	+	160109777-160109826	5q36	PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 19 (predicted) (Arhgef19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48976078-S	ILMN_269468	CASP7	NM_022260.2	NM_022260.2		64026	48976078	NM_022260.2	Casp7	NP_071596.1	ILMN_1363486	0004610528	S	1951	CTGACTTGCCCGATCATCCACACAGGTGCTGAAGAGTAACCCATCCCACG	1	+	262721297-262721346	1q55	Rattus norvegicus caspase 7 (Casp7), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62658321-S	ILMN_64912	RGD1564611_PREDICTED	XM_341025.3	XM_341025.3		360753	109494954	XM_341025.3	RGD1564611_predicted	XP_341026.3	ILMN_1359119	0003710072	S	4119	CTCAGAGGTGGAAGAGGAGAAGTCCACACTCCGGCAACGACGCTTTCTGC	12	-	2610817-2610857:2611620-2611628	12p12	PREDICTED: Rattus norvegicus similar to neuropathy target esterase homolog (predicted) (RGD1564611_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717730-S	ILMN_67665	LOC367357	XM_346104.2	XM_346104.2		367357	62717730	XM_346104.2	LOC367357	XP_346105.2	ILMN_1372124	0004120450	S	236	TGCCAACACTTGGGTGCCTGAGAGGATCCTCAAACCAAAGGCAGACGAGG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367357), mRNA.					
Rattus norvegicus	RefSeq	GI_62646919-S	ILMN_291124	HYAL6	NM_001024320.1	NM_001024320.1		500051	66730281	NM_001024320.1	Hyal6	NP_001019491.1	ILMN_1374072	0006520671	S	2192	GTGAGAGTTTGTCTGGGGGGCATGGTTGGGGGGATAAGGAACTAGAAACA	4	+	51224775-51224824	4q22	Rattus norvegicus hyaluronoglucosaminidase 6 (Hyal6), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667401-S	ILMN_60482	LOC302492	XM_228685.3	XM_228685.3		302492	62667401	XM_228685.3	LOC302492	XP_228685.3	ILMN_1363773	0006450411	S	2164	GCCCTCACTTCTGAGTGGACACAAAATCTGTTCGTGTGTAGGATTTCACC				Xq36	PREDICTED: Rattus norvegicus similar to mCHCR (LOC302492), mRNA.					
Rattus norvegicus	RefSeq	GI_62666339-S	ILMN_69633	SIM1_PREDICTED	XM_228329.4	XM_228329.4		309888	109509665	XM_228329.4	Sim1_predicted	XP_228329.3	ILMN_1349911	0004730494	S	2266	CATCTAAGGATGCAGCCGGACCCAGCGCAAGGACACAAGGGAACATCTGT	20	+	54983084-54983133	20q13	PREDICTED: Rattus norvegicus single-minded 1 (predicted) (Sim1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577448-S	ILMN_279778	OLR468	NM_001001124.1	NM_001001124.1		406045	47577448	NM_001001124.1	Olr468	NP_001001124.1	ILMN_1359859	0000110411	S	398	CGAGCAAAATGTCCAGAAGCGTCTGCCGCTCTCTTGTAGCTGCACCATAC	3	+	69165911-69165960	3q24	Rattus norvegicus olfactory receptor 468 (Olr468), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr468	Olr468
Rattus norvegicus	RefSeq	GI_62656454-S	ILMN_67344	LOC287403	XM_220624.2	XM_220624.2		287403	62656454	XM_220624.2	LOC287403	XP_220624.2	ILMN_1370560	0005690008	S	907	CGTACACTCTCAGCCCACAGGTCTTCAGCACCAAGCCATCCGCTAGAGAT				10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC287403), mRNA.					
Rattus norvegicus	RefSeq	GI_62666699-S	ILMN_67622	RGD1562962_PREDICTED	XM_235716.3	XM_235716.3		300275	109510575	XM_235716.3	RGD1562962_predicted	XP_235716.1	ILMN_1368955	0003520075	S	600	CCTCCAGGCTCTGTACATCAAGAGCCCCAGAGTCTGTATTAGGATGCTCC	X	-	37351843-37351892	Xq14	PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (predicted) (RGD1562962_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654779-S	ILMN_51938	RGD1562107_PREDICTED	XM_343545.3	XM_343545.3		363205	109485876	XM_343545.3	RGD1562107_predicted	XP_343546.2	ILMN_1353147	0006130372	S	507	ATGCCACGCCAGTGTTCTCTCGGGCTTCCCTCTGCTACAGGACTTCAAGG	9	+	19976085-19976124:19977950-19977959	9q13	PREDICTED: Rattus norvegicus similar to class-alpha glutathione S-transferase (predicted) (RGD1562107_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664781-S	ILMN_61468	TK2_PREDICTED	XM_226211.4	XM_226211.4		291824	109507710	XM_226211.4	Tk2_predicted	XP_226211.4	ILMN_1374400	0002810408	S	669	CCACCTCTACGAGGAGTGGCTGGTCACTGGTAGCCTTTTCCCAGCTGCAG	19	+	686941-686990	19p14	PREDICTED: Rattus norvegicus thymidine kinase 2, mitochondrial (predicted) (Tk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742673-S	ILMN_297679	ATXN10	NM_133313.1	NM_133313.1		170821	25742673	NM_133313.1	Atxn10	NP_579847.1	ILMN_1370090	0000380504	S	1645	CCATCTCACGGCCCTCTCGTCTCTGCGGTGTATGAACTCAGAAGTATCGG	7	+	123461512-123461561	7q34	Rattus norvegicus ataxin 10 (Atxn10), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]	Sca10	Sca10
Rattus norvegicus	RefSeq	GI_62666468-S	ILMN_267314	RGD1566387_PREDICTED	XM_001061708.1	XM_001061708.1		298326	109512486	XM_001061708.1	RGD1566387_predicted	XP_001061708.1	ILMN_1360669	0006130025	S	1308	GCAGAACAAGAGCACCAAGCAGTATGGAGTTATAGCGGTCTACAGTGGCC				Xq12	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1566387_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663331-S	ILMN_290766	RGD1562097_PREDICTED	XM_001057602.1	XM_001057602.1		498718	109505569	XM_001057602.1	RGD1562097_predicted	XP_001057602.1	ILMN_1358435	0007050546	S	321	CAGACTGCGAAACCATGAAGGAGAGACGACAGGAATGCCAGAGCCTGAAC				17p14	PREDICTED: Rattus norvegicus RGD1562097 (predicted) (RGD1562097_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27683834-S	ILMN_280440	RGD1307694_PREDICTED	XR_008611.1	XR_008611.1		301425	109487208	XR_008611.1	RGD1307694_predicted		ILMN_2039985	0001500255	S	1603	CCCACAATCAGGCGAAACACTGTGCACGACCATACACTGCTCCAGAGCCC				9q31	PREDICTED: Rattus norvegicus similar to dentin sialophosphoprotein; dentin phosphophoryn; dentinogenesis imperfecta 1 (predicted) (RGD1307694_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659494-S	ILMN_50640	LAMC2	XM_213902.4	XM_213902.4		192362	109498027	XM_213902.4	Lamc2	XP_213902.4	ILMN_1368403	0000060520	S	5003	GACGGTTGCATCATGGGAATACCAGTGGGAATTGCTGGAGGAACGGAGGC	13	-	68151174-68151223	13q21	PREDICTED: Rattus norvegicus lamimin, gamma 2 (Lamc2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A laminin complex composed of alpha4, beta1 and gamma1 polypeptide chains [goid 5607] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9507134-S	ILMN_265407	SPTBN2	NM_019167.1	NM_019167.1		29211	9507134	NM_019167.1	Sptbn2	NP_062040.1	ILMN_1366935	0005080601	S	7921	GTGTGCCACCCACCATGCAGTTCTTTGCCTCTGGGATCAGCCAGGACCCT	1	+	207358639-207358688	1q42	Rattus norvegicus spectrin, beta, non-erythrocytic 2 (Sptbn2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins [goid 8091] [evidence ISS]; Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins [goid 8091] [evidence TAS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence TAS]	The initial attachment of a synaptic vesicle membrane to the presynaptic membrane, mediated by proteins protruding from the membrane of the synaptic vesicle and the target membrane [goid 16081] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis [goid 17158] [evidence TAS]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]	Sptbn2	Sptbn2
Rattus norvegicus	RefSeq	GI_62643380-S	ILMN_67925	RGD1310132	XM_342238.3	XM_342238.3		361939	109464796	XM_342238.3	RGD1310132	XP_342239.3	ILMN_1369441	0000130136	S	1887	CCCACGATGGGCAGTCAGCCTTGTGTGTGGAATAGTAGCGTTCACCATCT	2	-	127782938-127782987	2q26	PREDICTED: Rattus norvegicus similar to 2810423E13Rik protein (RGD1310132), mRNA.					
Rattus norvegicus	RefSeq	GI_62664710-S	ILMN_57070	RGD1559694_PREDICTED	XM_574179.2	XM_574179.2		498891	109506859	XM_574179.2	RGD1559694_predicted	XP_574179.1	ILMN_1350515	0006180372	S	971	CGACTGTTTCTCCAAGTGTGATCTGCGAGTGAACAAGTGTGGAGCCCGGC	18	+	81307524-81307573	18q12.3	PREDICTED: Rattus norvegicus similar to hypothetical protein B230399E16 (predicted) (RGD1559694_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647608-S	ILMN_51628	LOC502845	XM_578345.1	XM_578345.1		502845	62647608	XM_578345.1	LOC502845	XP_578345.1	ILMN_1370308	0004850121	S	71	GTGTGGCCTGCAGAGTTTGTTACCTGCCCGTGAGACGATTGAGATTGAGG				4q32	PREDICTED: Rattus norvegicus similar to SPCS2 protein (LOC502845), mRNA.					
Rattus norvegicus	RefSeq	GI_34858200-S	ILMN_274033	RGD1563667_PREDICTED	XM_001053995.1	XM_001053995.1		365855	109514619	XM_001053995.1	RGD1563667_predicted	XP_001053995.1	ILMN_1367989	0004120369	S	995	TGAAGTCTCTGATACCGTGGGGTGGAAGTCAATGGTGGAGTCACATCCCC				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1563667_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643853-S	ILMN_274033	RGD1563667_PREDICTED	XM_001053995.1	XM_001053995.1		365855	109514619	XM_001053995.1	RGD1563667_predicted	XP_001053995.1	ILMN_1361233	0006940019	S	544	CAAGGCAGATGTTGGTCAACGACATAGGAGAGCTGTGGGAAAATTCCCTC				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1563667_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646162-S	ILMN_278135	RGD1310030_PREDICTED	XM_001081310.1	XM_001081310.1		296188	109470890	XM_001081310.1	RGD1310030_predicted	XP_001081310.1	ILMN_1365574	0005550129	S	1483	CTGCCAGAAGGTCGGGCTAGGTTCAGCCTTTCCTCAGCTCATACTCGGGA				3q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C130053K05 gene; similar to dJ718P11.1.1 (novel class II aminotransferase similar to serine palmotyltransferase (isoform 1)) (predicted) (RGD1310030_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718129-S	ILMN_67146	LOC301986	XM_217515.3	XM_217515.3		301986	62718129	XM_217515.3	LOC301986	XP_217515.3	ILMN_1357912	0000840204	S	538	CTGAGGAGGCAGCACCCACAGAATCAGGCCATGAGGAAAAGGAGAGGCTG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC301986), mRNA.					
Rattus norvegicus	RefSeq	GI_62662415-S	ILMN_270858	LSM4_PREDICTED	XM_001067054.1	XM_001067054.1		290647	109503942	XM_001067054.1	Lsm4_predicted	XP_001067054.1	ILMN_1360845	0002450600	S	542	GCGCCTTTGCGTGAAGCCCCACTTGGCGTCTGATCCAGTGAAATCCCTGA				16p14	PREDICTED: Rattus norvegicus LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27670054-S	ILMN_269768	RGD1562912_PREDICTED	XM_224829.1	XM_224829.1		290726	27670054	XM_224829.1	RGD1562912_predicted	XP_224829.1	ILMN_1369574	0003780176	S	1960	TGCAACGAACATTGGGCCCCACCCAACTGCCTGAACAAGGGCTTTGGAGG	16	+	39656578-39656627	16p11	PREDICTED: Rattus norvegicus similar to testase-9 (predicted) (RGD1562912_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742810-S	ILMN_300754	WDR46	NM_212491.2	NM_212491.2		309628	55742810	NM_212491.2	Wdr46	NP_997656.1	ILMN_1371292	0000520471	S	1913	GGGGCCAGAATGCTCAGTGGGCAAGGCTAAACCTGATGCCAAACCTGAGT	20	-	5089899-5089948	20p12	Rattus norvegicus WD repeat domain 46 (Wdr46), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94931; Bing4	MGC94931; Bing4
Rattus norvegicus	RefSeq	GI_62648627-S	ILMN_55760	LOC500407	XM_575770.1	XM_575770.1		500407	62648627	XM_575770.1	LOC500407	XP_575770.1	ILMN_1372911	0004480309	S	186	GGGTCTCTGTTCCTACCTGGCATCACTGCTCAGGGTCACACGAGGGAAAA					PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC500407), mRNA.					
Rattus norvegicus	RefSeq	GI_19173777-S	ILMN_277818	CYSLTR2	NM_133413.1	NM_133413.1		170926	19173777	NM_133413.1	Cysltr2	NP_596904.1	ILMN_1366032	0002650403	S	572	GGGTGGGCTTCTTGCTTCCATTTTTCATACTCACCATCTGCTACCTGTTG	15	-	53647808-53647857	15p11	Rattus norvegicus cysteinyl leukotriene receptor 2 (Cysltr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with a cysteinyl leukotriene to initiate a change in cell activity. Cysteinyl leukotrienes are leukotrienes that contain a peptide moiety based on cysteine [goid 1631] [evidence ISS]; Combining with a cysteinyl leukotriene to initiate a change in cell activity. Cysteinyl leukotrienes are leukotrienes that contain a peptide moiety based on cysteine [goid 1631] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Cyslt2	Cyslt2
Rattus norvegicus	RefSeq	GI_62641924-S	ILMN_65402	PCSK5	XM_342032.3	XM_342032.3		116548	109459948	XM_342032.3	Pcsk5	XP_342033.3	ILMN_1356195	0002470397	S	6437	TGGAGAAGACCGTAAGGATTCTGCTTTCAAACTGTACTTGGAGACCCCCC	1	-	220962255-220962304	1q43	PREDICTED: Rattus norvegicus proprotein convertase subtilisin/kexin type 5 (Pcsk5), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks [goid 5796] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The regulated release of renin into the blood stream by juxtoglomerular cells [goid 2001] [evidence ISS]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence ISS]; Any process involved in the assembly, maturation, egress, and release of progeny virions [goid 19067] [evidence ISS]; The process whose specific outcome is the progression of the respiratory tube over time, from its formation to the mature structure. The respiratory tube is assumed to mean any tube in the respiratory tract [goid 30323] [evidence ISS]; The generation of a mature nerve growth factor by proteolysis of a precursor [goid 32455] [evidence ISS]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42089] [evidence ISS]; The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide [goid 43043] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34854991-S	ILMN_57569	LOC365710	XM_345174.1	XM_345174.1		365710	34854991	XM_345174.1	LOC365710	XP_345175.1	ILMN_1361289	0004780253	S	206	TAAGGCGGCCTCAGCTGTGAACAATGCAGCTCAGGACCTATGCCGCAAAG				2q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (LOC365710), mRNA.					
Rattus norvegicus	RefSeq	GI_62652829-S	ILMN_278009	RGD1563386_PREDICTED	XM_001077714.1	XM_001077714.1		500911	109482643	XM_001077714.1	RGD1563386_predicted	XP_001077714.1	ILMN_1365438	0002810253	S	356	TCAGCTTTTAAGTGGACTCGGCTCTCCCTCCTGGGCCACAGTTTTGGTGG				7q34	PREDICTED: Rattus norvegicus similar to serine hydolase like protein, isoforms Serhl-2 (predicted) (RGD1563386_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660467-S	ILMN_266673	WDR19_PREDICTED	XM_223412.3	XM_223412.3		305349	62660467	XM_223412.3	Wdr19_predicted	XP_223412.3	ILMN_1355959	0004070102	S	3875	CGCAACAGGCCGACACATGCTGAAAGACGATTGGACAATGTGCCCACACT	14	-	45744852-45744895:45747859-45747864	14p11	PREDICTED: Rattus norvegicus WD repeat domain 19 (predicted) (Wdr19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090308-S	ILMN_285269	MPZL1	NM_001007728.1	NM_001007728.1		360871	56090308	NM_001007728.1	Mpzl1	NP_001007729.1	ILMN_1372608	0003610242	S	1940	AGGACAGCGTGCAAACCTCAGGGTCTAACTCCACACCCCACCTCCTTGGA	13	-	81321433-81321482	13q23	Rattus norvegicus myelin protein zero-like 1 (Mpzl1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93692	MGC93692
Rattus norvegicus	RefSeq	GI_47577696-S	ILMN_291696	OLR577	NM_001000567.1	NM_001000567.1		366108	47577696	NM_001000567.1	Olr577	NP_001000567.1	ILMN_1351929	0003120440	S	312	CGGGGCCTTTGCAGATGTTGAATGCCTCATGCTAGCTGTGATGGCCTATG	3	-	71353597-71353646	3q24	Rattus norvegicus olfactory receptor 577 (Olr577), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr577	Olr577
Rattus norvegicus	RefSeq	GI_62645876-S	ILMN_272322	RGD1563839_PREDICTED	XM_001081175.1	XM_001081175.1		366192	109470829	XM_001081175.1	RGD1563839_predicted	XP_001081175.1	ILMN_1374709	0006040292	S	2533	CTCCATGAGAAAGTGTTCACCTCTGCTCTCTGAAGGGCACTCATGGGCAT				3q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13149 (predicted) (RGD1563839_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928963-S	ILMN_281895	SYT4	NM_031693.1	NM_031693.1		64440	13928963	NM_031693.1	Syt4	NP_113881.1	ILMN_1364696	0005670546	S	1468	GGTGGGGGGCACTGGAAGGAGATCTGTGACTTCCCCAGGAGACAAATTGC	18	-	23807389-23807438	18p12	Rattus norvegicus synaptotagmin IV (Syt4), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence NAS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence NAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_16758933-S	ILMN_296792	SH3BP5	NM_054011.1	NM_054011.1		117186	16758933	NM_054011.1	Sh3bp5	NP_446463.2	ILMN_1374910	0001240450	S	2030	GGACGGTTTTATAGCCTGCCCGCCAAGGGGCTTTATTCTAAGAGACGTGC	16	-	6823798-6823847	16p16	Rattus norvegicus SH3-domain binding protein 5 (BTK-associated) (Sh3bp5), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence NAS]	Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family [goid 8432] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence TAS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Sab; Vesp18	Sab; Vesp18
Rattus norvegicus	RefSeq	GI_62643510-S	ILMN_267353	PLCL3_PREDICTED	XM_001059231.1	XM_001059231.1		310463	109466692	XM_001059231.1	Plcl3_predicted	XP_001059231.1	ILMN_1362784	0000360451	S	5866	GGTGGCTCACAACTTTAATCCCAGCAGAGGCAGGTAAGTTCGAGGCTAGC				2q31	PREDICTED: Rattus norvegicus phospholipase C-like 3 (predicted) (Plcl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651959-S	ILMN_68298	RGD1565071_PREDICTED	XM_578647.2	XM_578647.2		368175	109480361	XM_578647.2	RGD1565071_predicted	XP_578647.2	ILMN_1353947	0003850037	S	1120	GTTGCTCTGACGCTATCAGGACTCAAGATGAGCAGGTGTGTCTCCATGCC	7	-	17791382-17791431	7q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1565071_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866333	ILMN_56299	LOC366315	XM_345503.1	XM_345503.1		366315	34866333	XM_345503.1	LOC366315	XP_345504.1	ILMN_1650244	0002810725	S	2	TGAGCAGTTTGGTCCTGGTGTGTGGGCCGACATCTGTCTCCATGAAGGTC					PREDICTED: Rattus norvegicus similar to Rpl24 protein (LOC366315), mRNA.					
Rattus norvegicus	RefSeq	GI_8392970-S	ILMN_161861	BCAT1	NM_017253.2	NM_017253.2		29592	56799398	NM_017253.2	Bcat1	NP_058949.1	ILMN_2040300	0002570528	S	1133	AGGAGAACAGAGTGAAGGAGATGTTCGGCTCGGGGACAGCCTGCGTTGTC	4	-	182649138-182649187	4q44	Rattus norvegicus branched chain aminotransferase 1, cytosolic (Bcat1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9081] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]	Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence TAS]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IEA]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence ISS]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]	Bcatc; MGC105472	Bcatc; MGC105472
Rattus norvegicus	RefSeq	GI_62652126-S	ILMN_262518	VMD2L3_PREDICTED	XM_001080943.1	XM_001080943.1		314847	109481980	XM_001080943.1	Vmd2l3_predicted	XP_001080943.1	ILMN_1356181	0004570672	S	2280	TGTTTCGGGAGTCCAGGCACACCTCCCTAGGAAACTTAGGTCCGGATCCT				7q22	PREDICTED: Rattus norvegicus vitelliform macular dystrophy 2-like 3 (predicted) (Vmd2l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654892-S	ILMN_57596	LOC503250	XM_578782.1	XM_578782.1		503250	62654892	XM_578782.1	LOC503250	XP_578782.1	ILMN_1353167	0004010152	S	120	GACCCTCAACTGGGCTTTGCTCTAGATCTCCCTTCTCAGAGGACATGGAC				9q13	PREDICTED: Rattus norvegicus similar to WW domain binding protein 11 (LOC503250), mRNA.					
Rattus norvegicus	RefSeq	GI_62641256-S	ILMN_274055	PAIP2_PREDICTED	XM_001079699.1	XM_001079699.1		293469	109462840	XM_001079699.1	Paip2_predicted	XP_001079699.1	ILMN_1357225	0006900112	S	1093	ACCGCGTTCTCCCAGTGTTAAGCTTGAGGAAATACAATTGGAGGCTTGCG				1q36	PREDICTED: Rattus norvegicus polyadenylate-binding protein-interacting protein 2 (predicted) (Paip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871271-S	ILMN_272693	RGD1559575_PREDICTED	XM_001070154.1	XM_001070154.1		287231	109490606	XM_001070154.1	RGD1559575_predicted	XP_001070154.1	ILMN_1352648	0002350064	S	2187	CACCTTGAATCTCTACAGGTCTTACTTTGGCCTGGATGAAGCCTCGCTGG				10q21	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559575_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55926201-S	ILMN_272692	ID2	NM_013060.2	NM_013060.2		25587	55926201	NM_013060.2	Id2	NP_037192.1	ILMN_1349207	0006450091	S	897	AGTCTTTGGTCAGAAATGGCCTTTTTGACACGAGCCTACTGAATGCTGTG	6	-	42781256-42781305	6q16	Rattus norvegicus inhibitor of DNA binding 2 (Id2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the mitotic cell cycle [goid 7090] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	MGC105494	MGC105494
Rattus norvegicus	RefSeq	GI_28212215-S	ILMN_265541	TAAR8A	NM_175599.1	NM_175599.1		319104	28212215	NM_175599.1	Taar8a	NP_783189.1	ILMN_1357854	0004050273	S	862	GCCAAAACCTTGGGGGTCACTGTGGTGGCATTTATGGTCTCATGGCTACC	1	-	21858014-21858063	1p12	Rattus norvegicus trace-amine-associated receptor 8a (Taar8a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Trar5; Ta11	Trar5; Ta11
Rattus norvegicus	RefSeq	GI_58865799-A	ILMN_265507	CREB3L3	NM_001012115.1	NM_001012115.1		314638	58865799	NM_001012115.1	Creb3l3	NP_001012115.1	ILMN_1376969	0000070019	S	1444	CGAGGTGGCTCAGGGTCCGTGTGGTGCAAGATGCTTTGGGGGTGCTATGA	7	+	10114476-10114525	7q11	Rattus norvegicus cAMP responsive element binding protein 3-like 3 (Creb3l3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	MGC109013	MGC109013
Rattus norvegicus	RefSeq	GI_62643013-S	ILMN_50083	LOC497752	XM_579360.1	XM_579360.1		497752	62643013	XM_579360.1	LOC497752	XP_579360.1	ILMN_1370256	0000450128	S	1261	GACTCACATGAACCTCCTGACATCCAGCAAACTGGGCTACCATCCCTACG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_012927 (LOC497752), mRNA.					
Rattus norvegicus	RefSeq	GI_62652875-S	ILMN_68381	SMC1L2_PREDICTED	XM_217011.4	XM_217011.4		300121	109481116	XM_217011.4	Smc1l2_predicted	XP_217011.3	ILMN_1370383	0007050184	S	3676	TCCAGACACTGAAGACCAAGAAGGCAGCAGGAGCCACCGGAAACCCAGAG	7	-	123079195-123079244	7q34	PREDICTED: Rattus norvegicus SMC (structural maintenace of chromosomes 1)-like 2 (S. cerevisiae) (predicted) (Smc1l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59624976-S	ILMN_51642	FAS	NM_139194.2	NM_139194.2		246097	59624976	NM_139194.2	Fas	NP_631933.2	ILMN_1373348	0005050128	S	2370	CCTAAGGAGTCCTCTGGTATTTGACCAGGTCCTGTGCAGTGCCACATTGT	1	+	238274645-238274694	1q52	Rattus norvegicus Fas (TNF receptor superfamily, member 6) (Fas), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEP]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 2377] [evidence ISS]; A organ system process carried out by any of the organs or tissues of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism [goid 3014] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEP]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; The process of apoptosis in inflammatory cells, any cell participating in the inflammatory response to a foreign substance e.g. neutrophil, macrophage [goid 6925] [evidence ISS]; The process of apoptosis in transformed cells, cells that have undergone changes manifested by escape from control mechanisms, increased growth potential, alterations in the cell surface, karyotypic abnormalities, morphological and biochemical deviations from the norm [goid 6927] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IMP]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS];  [goid 8625] [evidence ISS];  [goid 8625] [evidence IEP]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; The process by which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10467] [evidence ISS]; Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells [goid 19724] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEP]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; Any process that modulates the frequency, rate or extent of lymphocyte differentiation [goid 45619] [evidence ISS]; Any process that modulates the frequency, rate or extent of myeloid cell differentiation [goid 45637] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of B cell activation [goid 50869] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence TAS]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576544-S	ILMN_292644	OLR1637	NM_001000503.1	NM_001000503.1		305841	47576544	NM_001000503.1	Olr1637	NP_001000503.1	ILMN_1370786	0000540097	S	579	CAACACCACGAGACTGGAGGAGGCTGACTTCGTCCTGGCCTTTCTTGTCA	15	-	27051613-27051662	15p14	Rattus norvegicus olfactory receptor 1637 (Olr1637), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1637	Olr1637
Rattus norvegicus	RefSeq	GI_51948499-S	ILMN_294394	COG6	NM_001004262.1	NM_001004262.1		310411	51948499	NM_001004262.1	Cog6	NP_001004262.1	ILMN_1351803	0001660239	S	1883	GCATGCAGCCGTGATGAATCCAGTCAACGCGTACAAAGACCCGGAGAGCA	2	-	142767477-142767526	2q26	Rattus norvegicus component of oligomeric golgi complex 6 (Cog6), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p) [goid 17119] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		MGC94990	MGC94990
Rattus norvegicus	RefSeq	GI_62658849-S	ILMN_51371	RGD1563482_PREDICTED	XM_573395.2	XM_573395.2		498179	109495866	XM_573395.2	RGD1563482_predicted	XP_573395.1	ILMN_1359027	0005270435	S	724	TGGTGGTGTACACCTGCCATCTGAGCACTTGGGAGAGCTAAGACAGGAGG	12	-	33378120-33378169	12q15	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38663 (predicted) (RGD1563482_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640440-S	ILMN_48770	PEG12_PREDICTED	XM_218737.4	XM_218737.4		308692	109458851	XM_218737.4	Peg12_predicted	XP_218737.4	ILMN_1375050	0000870333	S	775	AGGAGGGCGCAGCTCAGAAATGGGGACGACCTTCTTGTCTCTGGCAGCTA	1	-	116710241-116710290	1q22	PREDICTED: Rattus norvegicus paternally expressed 12 (predicted) (Peg12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14192924-S	ILMN_263011	TPM1	NM_001034075.1	NM_001034075.1		24851	78000202	NM_001034075.1	Tpm1	NP_001029247.1	ILMN_1354163	0006450056	S	1015	CCTAGGGCCAGGCACAGACCGTGCTTTCTATTGTACAGAGGTGATCCTCC	8	-	71336950-71336999	8q24	Rattus norvegicus tropomyosin 1, alpha (Tpm1), transcript variant 9, mRNA.	Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IMP]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; Any process that activates or increases the rate of ATP hydrolysis by an ATPase [goid 32781] [evidence IMP]; The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51693] [evidence IDA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence TAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IDA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IMP]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Alpha-tm; Tma2; Tmsa	Alpha-tm; Tma2; Tmsa
Rattus norvegicus	RefSeq	GI_62657518-S	ILMN_70306	LOC363712	XM_343991.2	XM_343991.2		363712	62657518	XM_343991.2	LOC363712	XP_343992.2	ILMN_1372603	0003780576	S	348	GAAGACAGGGAGCACCAGGATCAGGAAGGAGCTGGAGAAAAGGGAGCTGT					PREDICTED: Rattus norvegicus similar to Tcf2 protein (LOC363712), mRNA.					
Rattus norvegicus	RefSeq	GI_47577438-S	ILMN_265842	OLR464	NM_001000296.1	NM_001000296.1		295734	47577438	NM_001000296.1	Olr464	NP_001000296.1	ILMN_1366490	0004570687	S	560	ACACACCACCCCTACTCAAACTCTCTTGCTCTGACATCCATACGAATGGC	3	+	69112800-69112849	3q24	Rattus norvegicus olfactory receptor 464 (Olr464), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr464	Olr464
Rattus norvegicus	RefSeq	GI_62667319-S	ILMN_278943	LOC678928	XM_001053866.1	XM_001053866.1		678928	109469966	XM_001053866.1	LOC678928	XP_001053866.1	ILMN_1350471	0002940162	S	216	CTGGCCCAAGCCCCTGCCCTAGCACAAATCAATGGACGAGAAGGTGCTGA					PREDICTED: Rattus norvegicus similar to Down syndrome critical region homolog 6 (LOC678928), mRNA.					
Rattus norvegicus	RefSeq	GI_58865417-A	ILMN_265511	SF4	NM_001011920.1	NM_001011920.1		290666	58865417	NM_001011920.1	Sf4	NP_001011920.1	ILMN_1376609	0000070408	S	1826	GACCGGCCAGCTGAACTCTCAAAGGAGGATGATGAGTACGAGGCCTTCCG	16	-	19836282-19836331	16p14	Rattus norvegicus splicing factor 4 (Sf4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663829-S	ILMN_288325	ZNF187	XM_001060246.1	XM_001060246.1		266792	109505947	XM_001060246.1	Znf187	XP_001060246.1	ILMN_1355448	0002650039	S	1220	AGGATGAGCCCCGAGAATGCAAGGAGTGTGGGAAAACCTTTAGTCGGGCC				17q11	PREDICTED: Rattus norvegicus zinc finger protein 187 (Znf187), mRNA.					
Rattus norvegicus	RefSeq	GI_62079136-S	ILMN_276120	CD320	XM_001067944.1	XM_001067944.1		362851	109521717	XM_001067944.1	Cd320	XP_001067944.1	ILMN_1358867	0002570309	S	854	GGTCGTCAGACACTCCCTTTGTATGTGGTGAGCTTTGCTGGAAAATCGCC				7q12	PREDICTED: Rattus norvegicus CD320 antigen (Cd320), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_55741427-S	ILMN_263047	NRP1	NM_145098.2	NM_145098.2		246331	55741427	NM_145098.2	Nrp1	NP_659566.1	ILMN_1367985	0001190021	S	3692	CCAAGATGCTGGCACTAGGCGTTGTTCAGTGGGCTCTTTCGATGGACATG	19	+	58487537-58487586	19q12	Rattus norvegicus neuropilin 1 (Nrp1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IMP]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence IEA]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IMP]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IEA]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon extension involved in axon guidance [goid 48843] [evidence ISS]	Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IPI]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 17154] [evidence IPI];  [goid 17154] [evidence TAS];  [goid 17154] [evidence IEA];  [goid 17154] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Nrp	Nrp
Rattus norvegicus	RefSeq	GI_62661960-S	ILMN_276740	SACS_PREDICTED	XM_001063390.1	XM_001063390.1		305940	109502539	XM_001063390.1	Sacs_predicted	XP_001063390.1	ILMN_1350658	0006020114	S	14108	TTCCCCAGATCCCCAATGACAGGTTCACGTCTGAGGTCGCCATGAGGGTG				15p12	PREDICTED: Rattus norvegicus sacsin (predicted) (Sacs_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645273-S	ILMN_50610	LOC502635	XM_578130.1	XM_578130.1		502635	62645273	XM_578130.1	LOC502635	XP_578130.1	ILMN_1367532	0001780600	S	814	TGCAGGGTATGGAGACTTTCAGCCACCGCCAACTGTATCCTGGGGCACTC				3q23	PREDICTED: Rattus norvegicus similar to HMG-1 (LOC502635), mRNA.					
Rattus norvegicus	RefSeq	GI_62656043-S	ILMN_272747	RMND5B	NM_001017473.1	NM_001017473.1		497900	62945301	NM_001017473.1	Rmnd5b	NP_001017473.1	ILMN_1355104	0000430315	S	853	GCCTTTTGCTCGGCTACACCAGAGAGAGATCCAGGTGATGATGGGCAGTC	10	-	37143665-37143689:37144507-37144531	10q22	Rattus norvegicus required for meiotic nuclear division 5 homolog B (S. cerevisiae) (Rmnd5b), mRNA.					
Rattus norvegicus	RefSeq	GI_62945301	ILMN_272747	RMND5B	NM_001017473.1	NM_001017473.1		497900	62945301	NM_001017473.1	Rmnd5b	NP_001017473.1	ILMN_1530466	0004610292	S	1707	TGTAAATAGCCCGTTAGAATGAATGCTGTTTTATAACTTTGAGCAAATAT	10	-	37141510-37141559	10q22	Rattus norvegicus required for meiotic nuclear division 5 homolog B (S. cerevisiae) (Rmnd5b), mRNA.					
Rattus norvegicus	RefSeq	GI_62651698-S	ILMN_263967	RGD1563634_PREDICTED	XR_009036.1	XR_009036.1		500790	109481534	XR_009036.1	RGD1563634_predicted		ILMN_1372643	0002570064	S	2507	GAGGTGGCAGAAACCCTTTGTTCCTGTTCCCGTGGACTTATTCAACCGCG				7q11	PREDICTED: Rattus norvegicus similar to R31449_3 (predicted) (RGD1563634_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667537-S	ILMN_271987	ATP2B3	XM_001057885.1	XM_001057885.1		29599	109462349	XM_001057885.1	Atp2b3	XP_001057885.1	ILMN_1352628	0000450162	S	4343	GTTCCACCATGTGTTCACTATTTGGGCTGTGCAATGCGGTAGGGGCTAGC				Xq37	PREDICTED: Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 3 (Atp2b3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865749-A	ILMN_300013	ZC3H8	NM_001012090.1	NM_001012090.1		311414	58865749	NM_001012090.1	Zc3h8	NP_001012090.1	ILMN_1376913	0000870170	S	1195	TGCATGCTGGCTGGAGATGGATACTGCGGTGCCCTAGGCTGCAGAAGTCT	3	-	116548509-116548558	3q36	Rattus norvegicus zinc finger CCCH type containing 8 (Zc3h8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Zc3hdc8	Zc3hdc8
Rattus norvegicus	RefSeq	GI_62661310-S	ILMN_51847	LOC498494	XM_573755.1	XM_573755.1		498494	62661310	XM_573755.1	LOC498494	XP_573755.1	ILMN_1351932	0001410577	S	2871	GGGTGACCAAGGATCGGCAGGGTGCGAGGGAGTAAGGAATAAGCAACGTC					PREDICTED: Rattus norvegicus similar to hypothetical gene supported by AK044523 (LOC498494), mRNA.					
Rattus norvegicus	RefSeq	GI_62660577-S	ILMN_58328	LOC501923	XM_577347.1	XM_577347.1		501923	62660577	XM_577347.1	LOC501923	XP_577347.1	ILMN_1359525	0007050040	S	907	GCAGCCACTCTCACATCATCGCCTGGAGGCTGCGCTGGCTTCTGTTTTCT				14q11	PREDICTED: Rattus norvegicus similar to 1810013D10Rik protein (LOC501923), mRNA.					
Rattus norvegicus	RefSeq	GI_62638886-S	ILMN_294947	PTPRH	XM_001071263.1	XM_001071263.1		171125	109461180	XM_001071263.1	Ptprh	XP_001071263.1	ILMN_1364327	0005050112	S	2451	CCTGCCTGAGAGCTGGAACCTGAGAACAGGGGTGACGGTAGGTTTCCTGT				1q12	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, H (Ptprh), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638884-S	ILMN_294947	PTPRH	XM_001071263.1	XM_001071263.1		171125	109461180	XM_001071263.1	Ptprh	XP_001071263.1	ILMN_1349302	0001190546	S	214	GAATGCTCTGTGAGAGTGGAGAAGGATGGCGTCTACAGCACTTGGGAGAC				1q12	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, H (Ptprh), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090282-S	ILMN_275409	RCHY1	NM_001007618.1	NM_001007618.1		289508	56090282	NM_001007618.1	Rchy1	NP_001007619.1	ILMN_1356257	0006370537	S	1201	ACAGCTCTGGGATGTAGATGAAGCTCTGTGTGGAAGACCCCGATGTCCGG	14	+	17698510-17698559	14p22	Rattus norvegicus ring finger and CHY zinc finger domain containing 1 (Rchy1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94651	MGC94651
Rattus norvegicus	RefSeq	GI_62657537-A	ILMN_284924	DSCAM	NM_133587.1	NM_133587.1		171119	19424285	NM_133587.1	Dscam	NP_598271.1	ILMN_1376511	0005570609	S	6384	GCCACCTTACCTCAGCGAGAGGGTGCAGAGCTGGGACAGGCAGCTAAAAT				11q12	Rattus norvegicus Down syndrome cell adhesion molecule (Dscam), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The process by which the anatomical structure of the retina is generated and organized in a camera-type eye during the post-embryonic life stage . Morphogenesis pertains to the creation of form [goid 60060] [evidence ISS]	Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54312091-S	ILMN_297572	FFAR2	NM_001005877.1	NM_001005877.1		292794	54312091	NM_001005877.1	Ffar2	NP_001005877.1	ILMN_1366001	0004760139	S	843	CAGGGCCTTCGGGAAAGGTTTGCTACTACTCCGCAATCCCGGCTCCTCTA	1	-	85878552-85878601	1q21	Rattus norvegicus free fatty acid receptor 2 (Ffar2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_38454259-S	ILMN_293628	ADAMTS5	NM_198761.1	NM_198761.1		304135	38454259	NM_198761.1	Adamts5	NP_942056.1	ILMN_1366387	0002190113	S	2583	TAGCCACAGCAGCAACAAAGTGGGACTACACTCCCCGCAGCTACAGTGGG	11	-	25503531-25503580	11q11	Rattus norvegicus ADAM metallopeptidase with thrombospondin type 1 motif, 5 (Adamts5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34874652-S	ILMN_54916	RGD1562392_PREDICTED	XM_346007.3	XM_346007.3		367201	109485649	XM_346007.3	RGD1562392_predicted	XP_346008.3	ILMN_1352241	0000840168	S	78	CGACAACTGGAGTCAGATTCAGACCTTCAAGGCGAAGCCAGATGACCTCC	9	-	634602-634651	9q11	PREDICTED: Rattus norvegicus similar to Sulfotransferase K1 (rSULT1C2) (predicted) (RGD1562392_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665724-S	ILMN_289819	TULP1_PREDICTED	XM_001078381.1	XM_001078381.1		309900	109509840	XM_001078381.1	Tulp1_predicted	XP_001078381.1	ILMN_1356240	0003290148	S	1410	GCCTGATCGAGCTACACAACAAGCCACCCATCTGGAACGAAGACAGCGGC				20p12	PREDICTED: Rattus norvegicus tubby like protein 1 (predicted) (Tulp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649278-S	ILMN_274583	RGD1561587_PREDICTED	XR_007880.1	XR_007880.1		500510	109476831	XR_007880.1	RGD1561587_predicted		ILMN_1368898	0006200673	S	463	GTGAGGACTAACAGAAAAGAGCCTGAGCTGCTGGAGTCCACTCCATACGG				5q33	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561587_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663279-S	ILMN_56246	LOC497710	XM_579705.1	XM_579705.1		497710	62663279	XM_579705.1	LOC497710	XP_579705.1	ILMN_1360357	0003290500	S	1545	GGTCAAAAATAGATTGAGTGAATTTGCATATAGGATGGAGAAATACTTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_175582 (LOC497710), mRNA.					
Rattus norvegicus	RefSeq	GI_62648331-I	ILMN_63541	TM7SF3_PREDICTED	XM_575722.1	XM_575722.1		297725	62648331	XM_575722.1	Tm7sf3_predicted	XP_575722.1	ILMN_1375613	0003390154	S	2062	GTTCTTGTAGTTCTTGGACAGTCAGTCTGAATCTGTGGAGGGGGAGGCAG				4q44	PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 3 (predicted) (Tm7sf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34857496-S	ILMN_271528	LOC365807	XM_001059944.1	XM_001059944.1		365807	109466739	XM_001059944.1	LOC365807	XP_001059944.1	ILMN_1355167	0004760519	S	2669	CAGCTTCTGTGAGTAGTGAGCTTAACAACACCGCAGAGTCGATTGTTCTG				2q31	PREDICTED: Rattus norvegicus similar to putative pheromone receptor V2R2 (LOC365807), mRNA.					
Rattus norvegicus	RefSeq	GI_6981419-S	ILMN_286352	PRSS1	NM_012635.1	NM_012635.1		24691	6981419	NM_012635.1	Prss1	NP_036767.1	ILMN_1369322	0004780239	S	511	TCTCAGGCTGACTGTGAAGCCGCCTACCCTGGGGAAATCACCAGCAGCAT	4	+	69188510-69188559	4q22	Rattus norvegicus protease, serine, 1 (trypsin 1) (Prss1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence TAS]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them [goid 31000] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Try1; RATPTRYI; PTRYI	Try1; RATPTRYI; PTRYI
Rattus norvegicus	RefSeq	GI_24233560-S	ILMN_272592	SLC35E4	NM_153316.2	NM_153316.2		266687	78126146	NM_153316.2	Slc35e4	NP_695228.2	ILMN_1348879	0000630148	S	1910	GTTGCACAGTCTTTCCTGGGGGCAGGATGTGAGGGTCACCAGAGAAGGCT	14	-	84569147-84569196	14q21	Rattus norvegicus solute carrier family 35, member E4 (Slc35e4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]	MGC93128	MGC93128
Rattus norvegicus	RefSeq	GI_62645076-S	ILMN_268283	EPC2_PREDICTED	XM_001055851.1	XM_001055851.1		362132	109469848	XM_001055851.1	Epc2_predicted	XP_001055851.1	ILMN_1368555	0000730563	S	3583	CATCCCAGGTTTTGGGAGGGGGGAGGGTTGTGGCAAGATTGTCTTTTCAA				3q12	PREDICTED: Rattus norvegicus enhancer of polycomb homolog 2 (Drosophila) (predicted), transcript variant 2 (Epc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662231-S	ILMN_57156	PTPN20_PREDICTED	XM_224639.4	XM_224639.4		306281	109503070	XM_224639.4	Ptpn20_predicted	XP_224639.4	ILMN_1361962	0002680242	S	1221	ACACTTGCAGTTCATCAAATGGCCAGACCATGGCACTCCTGCCTCAGCAG	16	+	9243006-9243055	16p16	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 20 (predicted) (Ptpn20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663672-S	ILMN_62173	CUL2_PREDICTED	XM_341542.3	XM_341542.3		361258	109505034	XM_341542.3	Cul2_predicted	XP_341543.2	ILMN_1354773	0006760014	S	3510	CCGCTGTCTTTATGTATGGTTTTGCCTTCCTACCTCGTGTGGATAAGGGC	17	-	62701402-62701451	17q12.1	PREDICTED: Rattus norvegicus cullin 2 (predicted) (Cul2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663351-S	ILMN_286259	RGD1566043_PREDICTED	XM_001054929.1	XM_001054929.1		306798	109505515	XM_001054929.1	RGD1566043_predicted	XP_001054929.1	ILMN_1357945	0004210022	S	2214	TCTCCCCGACTCTGCTAGTATCCCCAAACCATGCCCAAAGATGAGGGGCC				17p14	PREDICTED: Rattus norvegicus similar to family with sequence similarity 22, member F (predicted) (RGD1566043_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659030-S	ILMN_61722	SIRT4_PREDICTED	XM_222243.4	XM_222243.4		304539	109496066	XM_222243.4	Sirt4_predicted	XP_222243.4	ILMN_1375082	0001230451	S	806	GACCCACGAGGTCTGACGATTTGGCTTGCCTGAAGCTGGATTCGCGCTGT	12	+	42399512-42399561	12q16	PREDICTED: Rattus norvegicus sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) (predicted) (Sirt4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018557-S	ILMN_284514	SERPING1	NM_199093.1	NM_199093.1		295703	40018557	NM_199093.1	Serping1	NP_954524.1	ILMN_1374314	0004200050	S	1511	GGGACCAGCGACACAAGTTCCCAGTCTTCATGGGCCGTGTATATGACCCC	3	-	67969038-67969087	3q24	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade G, member 1 (Serping1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Interacting selectively with any component or product of the complement cascade [goid 1848] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	MGC72585	MGC72585
Rattus norvegicus	RefSeq	GI_62652080-S	ILMN_51073	CCDC59_PREDICTED	XM_235154.4	XM_235154.4		314799	109480545	XM_235154.4	Ccdc59_predicted	XP_235154.1	ILMN_1371849	0001340520	S	798	CTGACTGTTGCCCCCTTTTGTATGTGTATCGGGAGCCTCCTAACGGTGAA	7	+	44502267-44502316	7q21	PREDICTED: Rattus norvegicus coiled-coil domain containing 59 (predicted) (Ccdc59_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31745145-S	ILMN_291639	TBX3	NM_181638.1	NM_181638.1		353305	31745145	NM_181638.1	Tbx3	NP_853669.1	ILMN_1358637	0004480358	S	1782	GTCGCCTTTTGGGAGCCTGTTTCCTTACCCCTACACATACATGGCTGCAG	12	-	38155894-38155943	12q16	Rattus norvegicus T-box 3 (Tbx3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The specification of the anterior/posterior axis of the embryo by the products of genes expressed maternally and genes expressed in the zygote [goid 8595] [evidence ISS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; The process whose specific outcome is the progression of the female genitalia over time, from formation to the mature structure [goid 30540] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The regulated release of luteinizing hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary [goid 32275] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the arm are generated and organized. Morphogenesis pertains to the creation of form. In humans, the arms are the two upper limbs of the body from the shoulder to the hand [goid 35117] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45662] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; The regulated release of follicle-stimulating hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary [goid 46884] [evidence ISS]; The process by which the anatomical structures of the mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48332] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any activity that stops or downregulates transcription of genes globally, and is not specific to a particular gene or gene set [goid 16565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652060-S	ILMN_50193	RGD1311640_PREDICTED	XM_235095.4	XM_235095.4		314787	109480527	XM_235095.4	RGD1311640_predicted	XP_235095.4	ILMN_1374743	0005130010	S	7312	TCAAGGACCAAACTGGAGCCGAAAGTAGCACACCTGATTCTGATCAACTG	7	+	38224201-38224236:38227025-38227038	7q13	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0373 (predicted) (RGD1311640_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655699-S	ILMN_66977	LOC497866	XM_573046.1	XM_573046.1		497866	62655699	XM_573046.1	LOC497866	XP_573046.1	ILMN_1366831	0001190300	S	5	AGGAAGAGGCGAGGAGGCGGGTTGTCGGGCTGCGCTGGGTAGCTGTGCTT					PREDICTED: Rattus norvegicus hypothetical gene supported by BC083674 (LOC497866), mRNA.					
Rattus norvegicus	RefSeq	GI_57164100-S	ILMN_283596	EPS15	NM_001009424.1	NM_001009424.1		313474	57164100	NM_001009424.1	Eps15	NP_001009424.1	ILMN_1358902	0006840504	S	2650	GATTGAGTGGGCCAAGAGGGAGAGTGAGCGAGAAGAAGAGCAGAGGCTCG	5	+	130738695-130738744	5q35	Rattus norvegicus epidermal growth factor receptor pathway substrate 15 (Eps15), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659219-S	ILMN_284478	RGD1309602_PREDICTED	XM_001053834.1	XM_001053834.1		304731	109498513	XM_001053834.1	RGD1309602_predicted	XP_001053834.1	ILMN_1352654	0000380086	S	1884	GCACTCCTACTGTTCAAATCGTCGTTTCCCTTGGGCTTTGCTGACACAGG				13q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2500001K11 (predicted) (RGD1309602_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647044-S	ILMN_271704	RGD1565373_PREDICTED	XM_001069608.1	XM_001069608.1		296985	109473367	XM_001069608.1	RGD1565373_predicted	XP_001069608.1	ILMN_1373158	0005270037	S	1706	AACAGCTTCCCCCATGCGTTGGAGAGAACAGCCCGGAGCTGGAGGCTGCT				4q22	PREDICTED: Rattus norvegicus similar to CD69 antigen (p60, early T-cell activation antigen) (predicted) (RGD1565373_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577296	ILMN_295144	OLR720	NM_001001067.1	NM_001001067.1		405955	47577296	NM_001001067.1	Olr720	NP_001001067.1	ILMN_1650612	0003140152	S	580	GGCCTCTTAGTGATGGCCAATGGAGGGCTGATCTGCACGGTTGTGTTTCT	3	-	74269269-74269318	3q24	Rattus norvegicus olfactory receptor 720 (Olr720), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr720	Olr720
Rattus norvegicus	RefSeq	GI_62644505-A	ILMN_301082	GPR177	NM_199408.2	NM_199408.2		362065	54262192	NM_199408.2	Gpr177	NP_955440.1	ILMN_1376886	0001090711	S	1678	GAACTATGGGGAAGACCAGTCTAATGGTGACCTGGGTGTCCACAGCGGGG	2	+	258116699-258116724:258127260-258127283	2q45	Rattus norvegicus G protein-coupled receptor 177 (Gpr177), transcript variant 1, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Gpr177	Gpr177
Rattus norvegicus	RefSeq	GI_62659781-S	ILMN_289300	LOC498289	XR_007707.1	XR_007707.1		498289	109499106	XR_007707.1	LOC498289		ILMN_1372078	0005670632	S	1220	GCCCTGTCAGGAGTGCCCCCCAGAGTTCCCATTTGGTATAACAGTGACAG				13q25	PREDICTED: Rattus norvegicus similar to Opsin-3 (Encephalopsin) (Panopsin) (LOC498289), mRNA.					
Rattus norvegicus	RefSeq	GI_24475720-S	ILMN_264538	NAE1	NM_032072.2	NM_032072.2		84019	24475720	NM_032072.2	Nae1	NP_114461.1	ILMN_1369991	0003140341	S	1495	CGGAGCTGCTGAGCCACACACCGTTGCTGCATTCCTGGGAGGAGCTGCTG	19	+	406594-406635:408444-408451	19p14	Rattus norvegicus NEDD8 activating enzyme E1 subunit 1 (Nae1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A cell cycle checkpoint which halts replication in response to nucleotide depletion [goid 31574] [evidence ISS]; A cell cycle checkpoint which halts replication in response to nucleotide depletion [goid 31574] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein [goid 45116] [evidence ISS]; Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein [goid 45116] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade [goid 19781] [evidence ISS]; Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade [goid 19781] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657404-S	ILMN_62074	LOC501736	XM_577137.1	XM_577137.1		501736	62657404	XM_577137.1	LOC501736	XP_577137.1	ILMN_1373611	0007050278	S	293	CTTGCAGAACCTCACGCTGGAGGATGCAGCTCTCTTGCTGTTGCTGTTGG				10q32.2	PREDICTED: Rattus norvegicus similar to mast cell-derived paired immunoglobulin-like receptor1 (LOC501736), mRNA.					
Rattus norvegicus	RefSeq	GI_13929197-S	ILMN_277268	VEGFA	NM_031836.1	NM_031836.1		83785	13929197	NM_031836.1	Vegfa	NP_114024.1	ILMN_1371686	0004120671	S	218	AGCCGTCCTGTGTGCCCCTAATGCGGTGTGCGGGCTGCTGCAATGATGAA	9	+	10527661-10527710	9q12	Rattus norvegicus vascular endothelial growth factor A (Vegfa), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence TAS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IMP]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence IDA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence ISS]; An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [evidence IDA]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that increases the extent to which blood vessels can be pervaded by fluid [goid 43117] [evidence IMP]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43536] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence IDA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IMP]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [pmid 15258583] [evidence NAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids [goid 1968] [evidence ISS]; Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence ISS]; Interacting selectively with any vascular endothelial growth factor receptor [goid 5172] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with vascular endothelial growth factor receptor 1 [goid 43183] [evidence ISS]; Interacting selectively with vascular endothelial growth factor receptor 2 [goid 43184] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Vegf	Vegf
Rattus norvegicus	RefSeq	GI_27465596-S	ILMN_281785	PHAX	NM_173133.1	NM_173133.1		286917	27465596	NM_173133.1	Phax	NP_775156.1	ILMN_1369867	0004230075	S	1314	AGTAATGTATGTGGTAGTCGTGCCGTCGCCGCAGTGTGGAAGGTGGCTGC	18	+	52361279-52361328	18q12.1	Rattus norvegicus phosphorylated adaptor for RNA export (Phax), mRNA.					
Rattus norvegicus	RefSeq	GI_62638911-S	ILMN_50077	LOC365184	XM_344856.2	XM_344856.2		365184	62638911	XM_344856.2	LOC365184	XP_344857.2	ILMN_1354977	0004540537	S	3827	CTCAGACAGCCCCAAAATATGGTGGACAGCTCCTCATATACCCTTGTTTC				1q21	PREDICTED: Rattus norvegicus similar to NACHT, leucine rich repeat and PYD containing 4B (LOC365184), mRNA.					
Rattus norvegicus	RefSeq	GI_62639043-S	ILMN_57280	LOC292630	XM_218301.3	XM_218301.3		292630	62639043	XM_218301.3	LOC292630	XP_218301.3	ILMN_1349583	0001770148	S	1362	GCTTCAGGAGCCCAAATGGCGGATGGAGATAAAAGAGAAGATGCCGAGTG					PREDICTED: Rattus norvegicus similar to OBOX4 (LOC292630), mRNA.					
Rattus norvegicus	RefSeq	GI_62648160-S	ILMN_266295	CHD4	XM_001063352.1	XM_001063352.1		117535	109474229	XM_001063352.1	Chd4	XP_001063352.1	ILMN_1359896	0000670537	S	6382	CAGCTACCTCTGTTGGCACCTTTTTAATACCAGGAACCCAGCGGCTCCAG				4q42	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 4 (Chd4), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; The series of molecular signals initiated in response to osmotic change [goid 7231] [evidence NAS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663434-S	ILMN_54391	RREB1_PREDICTED	XM_225250.4	XM_225250.4		306873	109504781	XM_225250.4	Rreb1_predicted	XP_225250.4	ILMN_1361372	0005220021	S	4811	CCAGGCACAGCAAGCACCACGGGAAAGACAGCGATAAAGATGAGCGGGCT	17	-	33128443-33128492	17p12	PREDICTED: Rattus norvegicus ras responsive element binding protein 1 (predicted) (Rreb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654631-S	ILMN_262909	LOC691575	XM_001078898.1	XM_001078898.1		691575	109513637	XM_001078898.1	LOC691575	XP_001078898.1	ILMN_1354122	0003360095	S	1092	GGCGTTTTCCTTAATACCCCCACTCCAACAAAACAGACCTACTTCCACTC	Un|NW_047892.1	+	1212288-1212337		PREDICTED: Rattus norvegicus similar to similar to RIKEN cDNA 1700001E04 (LOC691575), mRNA.					
Rattus norvegicus	RefSeq	GI_62663894-S	ILMN_274657	MCM10_PREDICTED	XM_001071383.1	XM_001071383.1		307126	109506165	XM_001071383.1	Mcm10_predicted	XP_001071383.1	ILMN_1352298	0001690671	S	3209	ACACTCGGCTTCTGGTTGATGAGTTTCAGTGCTGATGTTGGAGGCCACGG				17q12.3	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 10 (S. cerevisiae) (predicted) (Mcm10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577082-S	ILMN_262366	OLR30	NM_001000120.1	NM_001000120.1		293091	47577082	NM_001000120.1	Olr30	NP_001000120.1	ILMN_1359336	0005570129	S	18	GGTGGCTGGGTTTCTCCTGGAGGTTTTTGCTGAGACTTGGGAGTTCAGGC	1	+	142835611-142835660	1q32	Rattus norvegicus olfactory receptor 30 (Olr30), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr30	Olr30
Rattus norvegicus	RefSeq	GI_62658881-S	ILMN_53152	VPS29_PREDICTED	XM_213780.4	XM_213780.4		288666	109495912	XM_213780.4	Vps29_predicted	XP_213780.2	ILMN_1366950	0005360711	S	1052	GAGGCAGAGGCGGGTGGATCTCTTCAGCATTTTTTGCCAGTTTGGTCTAC	12	-	35403409-35403458	12q16	PREDICTED: Rattus norvegicus vacuolar protein sorting 29 (S. pombe) (predicted) (Vps29_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651368-S	ILMN_280901	RGD1560842_PREDICTED	XM_001056252.1	XM_001056252.1		299415	109480062	XM_001056252.1	RGD1560842_predicted	XP_001056252.1	ILMN_1367293	0003610348	S	614	GGTGCAGAAGACCCCGAATCGACCTAGAAGAGATGGGGCCGTCTTTGGAG				6q33	PREDICTED: Rattus norvegicus similar to Brix domain containing 1 (predicted) (RGD1560842_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090418-S	ILMN_287988	RGD1359380	NM_001007676.1	NM_001007676.1		303922	56090418	NM_001007676.1	RGD1359380	NP_001007677.1	ILMN_1350668	0005390050	S	1119	CGGCTGCTTGGGAAGGAGGCTGAGAAAGGAAGTCAGTGTGAGGCCAGCTA	11	+	64031557-64031606	11q21	Rattus norvegicus similar to hypothetical protein MGC7537 (RGD1359380), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	MGC94152	MGC94152
Rattus norvegicus	RefSeq	GI_47576812-S	ILMN_282848	OLR825	NM_001000904.1	NM_001000904.1		405214	47576812	NM_001000904.1	Olr825	NP_001000904.1	ILMN_1359309	0006980465	S	921	CAGGGATGCTCTGTCCAAGGTTCAATTGCACAGATATCAGAGGATGAAGG	4	+	152758460-152758509	4q42	Rattus norvegicus olfactory receptor 825 (Olr825), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	SCR G-14; Olr825; SCR G-15	SCR G-14; Olr825; SCR G-15
Rattus norvegicus	RefSeq	GI_62664669-S	ILMN_53872	RGD1308279_PREDICTED	XM_225732.4	XM_225732.4		307236	109506833	XM_225732.4	RGD1308279_predicted	XP_225732.4	ILMN_1364804	0001980017	S	3397	GTGGAACTACTGTCCTCGCTCTTGTGGGTGTGGAAAATCGACGTGGCCTC	18	-	77018206-77018255	18q12.3	PREDICTED: Rattus norvegicus similar to mKIAA0863 protein (predicted) (RGD1308279_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659425-S	ILMN_70052	ASPM_PREDICTED	XM_213891.4	XM_213891.4		289054	109497970	XM_213891.4	Aspm_predicted	XP_213891.2	ILMN_1369326	0006180075	S	9022	TACCGGGAGAAGCCTGGTGACCGAGTTGCCGAGAAGAGTGCCAGCATTTT	13	+	52858681-52858730	13q13	PREDICTED: Rattus norvegicus asp (abnormal spindle)-like, microcephaly associated (Drosophila) (predicted) (Aspm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667140-S	ILMN_68674	LOC501606	XM_577006.1	XM_577006.1		501606	62667140	XM_577006.1	LOC501606	XP_577006.1	ILMN_1351952	0005890129	S	127	GCCCCTACCAAGGCGGGGTCTTTTTCCTGGCCATCCATTTCCCAACAGAT					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2D 3 isoform 2 (LOC501606), mRNA.					
Rattus norvegicus	RefSeq	GI_62652637-S	ILMN_56308	LOC300043	XM_216963.3	XM_216963.3		300043	62652637	XM_216963.3	LOC300043	XP_216963.3	ILMN_1355653	0005570372	S	3689	AGACCTTATCGGTTCCTTGGCCTGCTCCGCCGCCAGGGGTCAGCAGAACT					PREDICTED: Rattus norvegicus similar to poly (ADP-ribose) polymerase family, member 10 (LOC300043), mRNA.					
Rattus norvegicus	RefSeq	GI_62661563-S	ILMN_49463	LOC498525	XM_573794.1	XM_573794.1		498525	62661563	XM_573794.1	LOC498525	XP_573794.1	ILMN_1352118	0004200164	S	1015	TGGGCGTTAGCTTGGCTCGCTCGTTGCTCGCTTCCGTGTTCTGGGGCTCA					PREDICTED: Rattus norvegicus similar to Bm403207 (LOC498525), mRNA.					
Rattus norvegicus	RefSeq	GI_62644554-S	ILMN_294938	GIPC2	NM_001037210.1	NM_001037210.1		365960	81295360	NM_001037210.1	Gipc2	NP_001032287.1	ILMN_1351859	0004070021	S	938	TCAGTGATGTGAAACAAGGCAGATGATGGTGTGGCCGGTCTTCCCGCAGA				2q45	Rattus norvegicus GIPC PDZ domain containing family, member 2 (Gipc2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC116274; Gipc2	MGC116274; Gipc2
Rattus norvegicus	RefSeq	GI_62650359-S	ILMN_274847	CAPN13	NM_001025133.1	NM_001025133.1		362701	68341950	NM_001025133.1	Capn13	NP_001020304.1	ILMN_1372275	0000770086	S	1630	GATGCCAGCCAACTTCAGAGCCTTCTCAACCAGGAGTACCTAACAGGGCC	6	+	22206274-22206319:22206404-22206407	6q13	Rattus norvegicus calpain 13 (Capn13), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC109045	MGC109045
Rattus norvegicus	RefSeq	GI_8392902-S	ILMN_270531	APCS	NM_017170.1	NM_017170.1		29339	8392902	NM_017170.1	Apcs	NP_058866.1	ILMN_1374373	0000130452	S	592	TGTGGGAGAGATTGCAGATTTGTACATGTGGGACAGTGTGCTGACCCCAG	13	-	89112975-89113024	13q24	Rattus norvegicus serum amyloid P-component (Apcs), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Sap	Sap
Rattus norvegicus	RefSeq	GI_62663299-S	ILMN_57616	LOC498714	XM_579859.1	XM_579859.1		498714	62663299	XM_579859.1	LOC498714	XP_579859.1	ILMN_1370625	0002810041	S	476	GCCTGTCCCACCTGATGATTCAAGCAGAACCTCGATGGGGGATCCTGTCG					PREDICTED: Rattus norvegicus LOC498714 (LOC498714), mRNA.					
Rattus norvegicus	RefSeq	GI_62648805	ILMN_64718	SEC61G_PREDICTED	XM_346040.2	XM_346040.2		367253	62648805	XM_346040.2	Sec61g_predicted	XP_346041.2	ILMN_1650904	0004730685	S	225	AACAGGCAGCACTATTAGCCCCCACCCAGGTTCCCTCGGATCTGATGATG				19q11	PREDICTED: Rattus norvegicus SEC61, gamma subunit (predicted) (Sec61g_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41054895-S	ILMN_292414	FUT7	NM_199491.1	NM_199491.1		296564	41054895	NM_199491.1	Fut7	NP_955785.1	ILMN_1350963	0004200367	S	1961	CCCAGGGGTTGTGGGAGAAGGATGGTGTGGATGATTCTGGGCCTTTGACA	3	+	3592937-3592986	3p13	Rattus norvegicus fucosyltransferase 7 (alpha (1,3) fucosyltransferase) (Fut7), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741483-S	ILMN_264620	MATN1	NM_001006979.1	NM_001006979.1		297894	55741483	NM_001006979.1	Matn1	NP_001006980.1	ILMN_1350211	0006220053	S	1742	ATGTTTGGGAGCAGGGATGTGTGCAGAGGTGAAAGCGCAGAGAAGGGGCG	5	+	149815200-149815249	5q36	Rattus norvegicus matrilin 1, cartilage matrix protein (Matn1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95132	MGC95132
Rattus norvegicus	RefSeq	GI_62667336-S	ILMN_56989	LOC317414	XM_228832.3	XM_228832.3		317414	62667336	XM_228832.3	LOC317414	XP_228832.3	ILMN_1356679	0001050484	S	610	GTCATAACAAACTGCTGGGTGAGATTCGGGTGACGGATGACAAGATGCCG					PREDICTED: Rattus norvegicus similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52) (LOC317414), mRNA.					
Rattus norvegicus	RefSeq	GI_62647870-S	ILMN_64445	FOXP1_PREDICTED	XM_216227.3	XM_216227.3		297480	62647870	XM_216227.3	Foxp1_predicted	XP_216227.3	ILMN_1351093	0000130632	S	2573	CAAGCCTTCGCCCGAATTCGAGACTCCAGTGGACGACCTATTTGCACAGC				4q34	PREDICTED: Rattus norvegicus forkhead box P1 (predicted) (Foxp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59709472-S	ILMN_47996	PDK1	NM_053826.2	NM_053826.2		116551	59709472	NM_053826.2	Pdk1	NP_446278.2	ILMN_1363982	0001240427	S	1356	TGGTGTGTGCCCAGCAGAGAGCCGAAAGACATGACGACGTTCCGAAGCTC	3	+	54319017-54319066	3q22	Rattus norvegicus pyruvate dehydrogenase kinase, isozyme 1 (Pdk1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IMP]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	MGC108625	MGC108625
Rattus norvegicus	RefSeq	GI_21217558-A	ILMN_265858	KCNC2	NM_139216.1	NM_139216.1		246153	41281705	NM_139216.1	Kcnc2	NP_631962.1	ILMN_2039099	0004040403	A	1810	GTTGACGACAGGTGATTACACGTGCGCTTCTGATGGAGGAATCAGGAAAG	7	+	51480354-51480403	7q21	Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 2 (Kcnc2), transcript variant a, mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv3.2; KShIIIA	Kv3.2; KShIIIA
Rattus norvegicus	RefSeq	GI_41281705-I	ILMN_265858	KCNC2	NM_139216.1	NM_139216.1		246153	41281705	NM_139216.1	Kcnc2	NP_631962.1	ILMN_1375744	0007000017	I	2922	CCCCTGTATCGTGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAATCG	7	+	51487816-51487865	7q21	Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 2 (Kcnc2), transcript variant a, mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv3.2; KShIIIA	Kv3.2; KShIIIA
Rattus norvegicus	RefSeq	GI_62643105-S	ILMN_268272	RGD1566229_PREDICTED	XR_008091.1	XR_008091.1		499556	109466238	XR_008091.1	RGD1566229_predicted		ILMN_1361096	0002900369	S	353	ACAAAGGTGACTGGCCTACGCTGAGAAGAAAGCTGCTGGCAAAGGGGACG				2q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1566229_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665462-S	ILMN_289000	RGD1306192_PREDICTED	XM_001055529.1	XM_001055529.1		361443	109509071	XM_001055529.1	RGD1306192_predicted	XP_001055529.1	ILMN_1348799	0002570072	S	502	GGGAAACCGCTGGCCCTGGTGGAGGAGATCAGGAAGAGACGTGATGTGAA				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310079N02 (predicted) (RGD1306192_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667465-S	ILMN_64136	HTATSF1_PREDICTED	XM_229199.4	XM_229199.4		317612	109511264	XM_229199.4	Htatsf1_predicted	XP_229199.4	ILMN_1372024	0002060242	S	2333	GGGGAATGTGAAGGAAGATGGGTCTCAATCCACAGACAGCAGCTTTGCCC	X	+	141711246-141711295	Xq36	PREDICTED: Rattus norvegicus HIV TAT specific factor 1 (predicted) (Htatsf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646503-S	ILMN_290313	GATA5	NM_001024316.1	NM_001024316.1		499951	66730289	NM_001024316.1	Gata5	NP_001019487.1	ILMN_1367821	0001400551	S	1918	GTGCACAGCTTGCTTATGGACGCAGGACTGCCAGAGACCAGTGTACAGGT	3	-	169385440-169385489	3q43	Rattus norvegicus GATA binding protein 5 (Gata5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928945-S	ILMN_301601	SMC1A	NM_031683.1	NM_031683.1		63996	13928945	NM_031683.1	Smc1a	NP_113871.1	ILMN_1352992	0000510181	S	3692	AAGTCCTGACCTTCGACCTCACCAAGTATCCAGATGCCAACCCTAACCCC	X	+	41547802-41547830	Xq21	Rattus norvegicus structural maintenance of chromosomes 1A (Smc1a), mRNA.	A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence ISS]; A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence ISS]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence ISS]; A process that is carried out at the cellular level that results in the formation, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information [goid 51276] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	SB1.8; KIAA0178	SB1.8; KIAA0178
Rattus norvegicus	RefSeq	GI_34851369-S	ILMN_275618	BRD7_PREDICTED	XM_001066875.1	XM_001066875.1		361374	109508503	XM_001066875.1	Brd7_predicted	XP_001066875.1	ILMN_2039928	0003990373	S	1912	GAACGAGCGGCTGAGCACTAGGCCTCCTCCCAATATGATCTGTCTCTTGG				19p11	PREDICTED: Rattus norvegicus bromodomain containing 7 (predicted) (Brd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651941-S	ILMN_67332	LOC314592	XM_234852.3	XM_234852.3		314592	62651941	XM_234852.3	LOC314592	XP_234852.3	ILMN_1367751	0002760397	S	2237	CGTGCTGTGGAGTCAATTTCAGAAGCATAAAGCACTTCACGCTGTCCCGG					PREDICTED: Rattus norvegicus similar to 9030612M13Rik protein (predicted) (LOC314592), mRNA.					
Rattus norvegicus	RefSeq	GI_47576080-S	ILMN_283794	OLR140	NM_001000162.1	NM_001000162.1		293279	47576080	NM_001000162.1	Olr140	NP_001000162.1	ILMN_1369138	0002650348	S	882	CAGTGCAAAGACCAAACAGATTCGCCAGGGAATCACTCACCTTCTCTTTC	1	+	161852808-161852857	1q32	Rattus norvegicus olfactory receptor 140 (Olr140), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr1-161944866-161945813_ORF; Olr140	ratchr1-161944866-161945813_ORF; Olr140
Rattus norvegicus	RefSeq	GI_62666518-S	ILMN_57527	LOC363443	XM_343763.2	XM_343763.2		363443	62666518	XM_343763.2	LOC363443	XP_343764.1	ILMN_1354356	0006220086	S	1475	GCAGGCTTTCACACATATACACTCAGATGGATCCTGTCTTGGCTCTGGAG				Xq12	PREDICTED: Rattus norvegicus similar to NDP (LOC363443), mRNA.					
Rattus norvegicus	RefSeq	GI_62658298-S	ILMN_63565	LASS4_PREDICTED	XM_221796.4	XM_221796.4		304208	109494929	XM_221796.4	Lass4_predicted	XP_221796.4	ILMN_1356893	0003850427	S	1662	CCTCACTGCCACATCAGGATTTATGTCCACTCTTGCCGGTATAGCACCAC	12	-	1257982-1258031	12p12	PREDICTED: Rattus norvegicus longevity assurance homolog 4 (S. cerevisiae) (predicted) (Lass4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653320-S	ILMN_285800	PRMT4	NM_001030041.2	NM_001030041.2		363026	77539779	NM_001030041.2	Prmt4	NP_001025212.1	ILMN_1375134	0005220180	S	2331	AGCACAGCCAGCTGGACCTCTCCTTCAACTACCAGGCCACATGGTCACCA	8	+	20694285-20694334	8q13	Rattus norvegicus protein arginine N-methyltransferase 4 (Prmt4), transcript variant 1, mRNA.				Carm1	Carm1
Rattus norvegicus	RefSeq	GI_62658984-S	ILMN_59389	RGD1560213_PREDICTED	XM_573405.2	XM_573405.2		498189	109495998	XM_573405.2	RGD1560213_predicted	XP_573405.2	ILMN_1375086	0000520670	S	1734	AACGGGACCCAAAGTATGGTGAGAAGGAACCACAGCCCCGAGAACGTGCA	12	+	41370972-41371021	12q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500001A10 (predicted) (RGD1560213_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667315-S	ILMN_279585	RGD1566282_PREDICTED	XM_001054034.1	XM_001054034.1		315911	109469973	XM_001054034.1	RGD1566282_predicted	XP_001054034.1	ILMN_1356759	0005900204	S	2588	GTTGGTGTTTGAAAAAGAATCACGGGAAGGGGGGATTCCAGGTGCCTTAC				Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D330045A20 (predicted) (RGD1566282_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653570-S	ILMN_291557	RGD1561386_PREDICTED	XM_001066453.1	XM_001066453.1		500985	109484590	XM_001066453.1	RGD1561386_predicted	XP_001066453.1	ILMN_1355687	0006110592	S	3102	GCCAGGCTCTTACTCAAGGAGCACCTAGGAAAGCAGTGGCTTCTTTTGGG				8q22	PREDICTED: Rattus norvegicus similar to CBL E3 ubiquitin protein ligase (Signal transduction protein CBL) (predicted) (RGD1561386_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981163-S	ILMN_296760	LIPE	NM_012859.1	NM_012859.1		25330	6981163	NM_012859.1	Lipe	NP_036991.1	ILMN_1352555	0006520711	S	3419	CGGCACTAAAAGACCTCTTGCACCCTTCTGCGCGGGCTTCCGTGATGAGT	1	-	80664026-80664075	1q21	Rattus norvegicus lipase, hormone sensitive (Lipe), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 15242332] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 17026959] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 15242332] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [pmid 7240206] [evidence EXP]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [pmid 6643478] [evidence EXP]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [pmid 10671541] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10940339] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10694408] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10671541] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [pmid 17026959] [evidence ISS]	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues [goid 46340] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues [goid 46340] [evidence ISS];  [goid 6361] [pmid 9582279] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IDA]; Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol [goid 47372] [evidence IDA]; Any activity that brings about termination of transcription by RNA polymerase I [goid 3716] [pmid 9582279] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17026959] [evidence ISS]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reactions: diacylglycerol + H2O = monoacylglycerol + a carboxylate, triacylglycerol + H2O = diacylglycerol + a carboxylate, and monoacylglycerol + H2O = glycerol + a carboxylate [goid 33878] [evidence IEA]; Interacting selectively with an unprocessed ribosomal RNA transcript [goid 42134] [pmid 9582279] [evidence ISS]	HSL	HSL
Rattus norvegicus	RefSeq	GI_62666930-S	ILMN_56705	RGD1565289_PREDICTED	XM_343793.3	XM_343793.3		363474	109510840	XM_343793.3	RGD1565289_predicted	XP_343794.3	ILMN_1375059	0004610577	S	771	GGGGTTAGGTGCCTCTGTCTATTACCCACAACAAGCCATCACTATTGCCC	X	+	81856729-81856778	Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610008C08 (predicted) (RGD1565289_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646321-S	ILMN_270622	MYBL2_PREDICTED	XM_001070125.1	XM_001070125.1		296344	109471256	XM_001070125.1	Mybl2_predicted	XP_001070125.1	ILMN_1369009	0000240647	S	2117	GCCGGGTATCAAGGAGGATAACAGCCTGCTCAACCAGGGCTTCCTACAGG				3q42	PREDICTED: Rattus norvegicus myeloblastosis oncogene-like 2 (predicted) (Mybl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660057-S	ILMN_67268	LOC363325	XM_347125.2	XM_347125.2		363325	62660057	XM_347125.2	LOC363325	XP_347126.2	ILMN_1352056	0000730593	S	306	GGTTACATGTAGCACAGGGGCTAGGTTAATAAAGAAGTCAAAGAGGAAAG					PREDICTED: Rattus norvegicus hypothetical LOC363325 (LOC363325), mRNA.					
Rattus norvegicus	RefSeq	GI_56605937-A	ILMN_279105	TXNDC4	NM_001008317.1	NM_001008317.1		298066	56605937	NM_001008317.1	Txndc4	NP_001008318.1	ILMN_1376313	0005890050	S	1222	CCTGAGAGCTCCTTCCAGAAGCTGGCGCCCAGCGAATATAGGTATACTTT	5	-	64869675-64869724	5q22	Rattus norvegicus thioredoxin domain containing 4 (endoplasmic reticulum) (Txndc4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence ISS]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence IEA]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	BWK4	BWK4
Rattus norvegicus	RefSeq	GI_62656232-S	ILMN_55473	LOC363618	XM_343911.2	XM_343911.2		363618	62656232	XM_343911.2	LOC363618	XP_343912.2	ILMN_1350969	0003940070	S	1988	GACCGGCCGCGACTTCGGCTGGGATGGATAGCAGAAATAATTTAAAAGAA				10q24	PREDICTED: Rattus norvegicus similar to heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 (LOC363618), mRNA.					
Rattus norvegicus	RefSeq	GI_62655681-S	ILMN_281721	RGD1304969_PREDICTED	XM_001079029.1	XM_001079029.1		302931	109489696	XM_001079029.1	RGD1304969_predicted	XP_001079029.1	ILMN_1371236	0002510441	S	834	TGTGGCCTATACGATCCGCAGCCAGGACACGGGCAAGCTGTTCATCACAG				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610015J01 (predicted) (RGD1304969_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665104-S	ILMN_287530	ANAPC10_PREDICTED	XM_001070328.1	XM_001070328.1		361389	109508601	XM_001070328.1	Anapc10_predicted	XP_001070328.1	ILMN_1356552	0005130487	S	1351	GCAGAGCGTTGTCAGCTGATACAGACTCACTCCTGCTCCGAGACAGACTG				19q11	PREDICTED: Rattus norvegicus anaphase promoting complex subunit 10 (predicted) (Anapc10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650910-S	ILMN_277997	PLEKHH1_PREDICTED	XM_001080885.1	XM_001080885.1		314262	109479555	XM_001080885.1	Plekhh1_predicted	XP_001080885.1	ILMN_1358715	0002680603	S	4999	GGGCAATGGTACTGTATTTGGGGCTTCTGCACTGATACTCAGGGAAGCTC				6q24	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 (predicted) (Plekhh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576368-S	ILMN_297343	OLR1549	NM_001000052.1	NM_001000052.1		288196	47576368	NM_001000052.1	Olr1549	NP_001000052.1	ILMN_1361847	0001940215	S	520	CACTTTTACTGTGACATCATGCCATTGCTCAAGATTTCCTGTACAGACTC	11	+	42189302-42189351	11q12	Rattus norvegicus olfactory receptor 1549 (Olr1549), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1549; ratchr11-42246372-42247295_ORF	Olr1549; ratchr11-42246372-42247295_ORF
Rattus norvegicus	RefSeq	GI_62663640-I	ILMN_60470	GLI3	XM_225411.3	XM_225411.3		140588	62663640	XM_225411.3	Gli3	XP_225411.3	ILMN_1375470	0002480670	S	6163	AAAAGCCCCAAAATGAGCTTCAGATAACAGGCCCTCCATGGGCCCTCAGG				17q12.1	PREDICTED: Rattus norvegicus GLI-Kruppel family member GLI3 (Gli3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IEA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IDA]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IEA]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IGI]; Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence IGI]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IGI]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IGI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence TAS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IGI]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IGI]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IMP]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IEA]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IGI]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IMP]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IEA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IGI]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence IMP]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IEA]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IMP]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate [goid 21775] [evidence IEA]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate [goid 21775] [evidence IGI]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21776] [evidence IEA]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21776] [evidence IGI]; The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain [goid 21798] [evidence IMP]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IEA]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IGI]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IGI]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IMP]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IMP]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IMP]; The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts [goid 35295] [evidence IEA]; The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts [goid 35295] [evidence IGI]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus [goid 42307] [evidence IGI]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IGI]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IGI]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IEA]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IMP]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence IMP]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IMP]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IMP]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IEA]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IMP]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IEA]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IGI]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IMP]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence IGI]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IMP]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence IGI]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IGI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556906-S	ILMN_297625	GALT	NM_001013089.2	NM_001013089.2		298003	70778864	NM_001013089.2	Galt	NP_001013107.1	ILMN_1357759	0005700403	S	1159	GAGGTACACTATTGCCTGACGCAGAAAGACAAGGAAACAGCAGCCACCGC	5	+	59188494-59188543	5q22	Rattus norvegicus galactose-1-phosphate uridylyltransferase (Galt), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence ISS]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IDA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IEA];  [goid 19691] [evidence IDA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides [goid 5534] [evidence IC ]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IC ]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence ISS]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence IDA]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence IEA]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC112778	MGC112778
Rattus norvegicus	RefSeq	GI_20302122-S	ILMN_52079	FBXO6B	NM_138917.2	NM_138917.2		192351	78042586	NM_138917.2	Fbxo6b	NP_620272.2	ILMN_1359050	0003780072	S	728	CTGGTATGGTCCCCGTGTCACCAACAGCAGCATCATCGTCAGCCACAGGA	5	-	165223108-165223157	5q36	Rattus norvegicus F-box only protein 6b (Fbxo6b), mRNA.				Fbxo6; Fbg2	Fbxo6; Fbg2
Rattus norvegicus	RefSeq	GI_47576390-S	ILMN_293924	OLR1561	NM_001000048.1	NM_001000048.1		288186	47576390	NM_001000048.1	Olr1561	NP_001000048.1	ILMN_1364897	0004200619	S	771	CACATATATTCGACCGAGTTCAGTCAACGAAGGAGATGAAGACATACCAG	11	+	42453440-42453489	11q12	Rattus norvegicus olfactory receptor 1561 (Olr1561), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1561	Olr1561
Rattus norvegicus	RefSeq	GI_62658604-S	ILMN_59220	LOC363892	XM_344090.2	XM_344090.2		363892	62658604	XM_344090.2	LOC363892	XP_344091.2	ILMN_1356387	0005690286	S	1480	GTGCCTGAAGAGATTGGAGAAGCCTAAGACGGTGGTGAAAGGATGGCAGC					PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC363892), mRNA.					
Rattus norvegicus	RefSeq	GI_62642055-S	ILMN_263572	LOC499337	XM_001056091.1	XM_001056091.1		499337	109459990	XM_001056091.1	LOC499337	XP_001056091.1	ILMN_1374172	0006040593	S	6418	TGCGGTGAGGCCGTAGAGAAGAACAGGAGACTCATTACCGCAGAGCAGCG	1	+	228633011-228633060	1q51	PREDICTED: Rattus norvegicus similar to dedicator of cytokinesis 8 (LOC499337), mRNA.					
Rattus norvegicus	RefSeq	GI_62666799-S	ILMN_278727	LOC684606	XM_001071213.1	XM_001071213.1		684606	109511737	XM_001071213.1	LOC684606	XP_001071213.1	ILMN_1356583	0002850068	S	678	AGATGGCAAACGTCCTGTGGATCTGGTGCCTCTGGAGAGTCCTGTGATTG					PREDICTED: Rattus norvegicus similar to ankyrin repeat and SOCS box-containing protein 9 (LOC684606), mRNA.					
Rattus norvegicus	RefSeq	GI_62666957-S	ILMN_265716	YIPF6	NM_001025747.1	NM_001025747.1		363476	71043719	NM_001025747.1	Yipf6	NP_001020918.1	ILMN_1366497	0000130438	S	333	GTAGAAGGGAAGAGGGATGGCGGAAGCCCAGAGTTTGCAGAAGTGTTCGT	X	+	86946295-86946344	Xq31	Rattus norvegicus Yip1 domain family, member 6 (Yipf6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC116126	MGC116126
Rattus norvegicus	RefSeq	GI_40538850-S	ILMN_274089	SMAD3	NM_013095.2	NM_013095.2		25631	40538850	NM_013095.2	Smad3	NP_037227.1	ILMN_1354074	0005360673	S	4513	AGCGGACGCTGCCTCTGCCAAGCTCCCAAAGTTACACAGGTACAGGCAGA	8	-	67803995-67804044	8q24	Rattus norvegicus SMAD family member 3 (Smad3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IMP]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence IPI]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence IMP]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence IMP]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IDA]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IMP]; Any process that decreases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10553] [evidence IDA]; Any process that increases the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 10694] [evidence IDA]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence IEA]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence IEA]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence ISS]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [evidence ISS]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production [goid 32731] [evidence IMP]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence ISS]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta3 [goid 32916] [evidence IMP]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42993] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42993] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of the paraxial mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48340] [evidence IEA]; The process by which the anatomical structures of the paraxial mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48340] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence IEA]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50927] [evidence IDA]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence IEA]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51894] [evidence IDA]; The conversion of a differentiated cell of one fate into a differentiated cell of another fate without first undergoing cell division or reversion to a more primitive or stem cell-like fate [goid 60290] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS];  [goid 3706] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS];  [goid 15460] [evidence ISS];  [goid 15460] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IPI]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]	Madh3	Madh3
Rattus norvegicus	RefSeq	GI_62659614-S	ILMN_59391	LOC364035	XM_573491.1	XM_573491.1		364035	62659614	XM_573491.1	LOC364035	XP_573491.1	ILMN_1357022	0000450014	S	388	GTCCTCCAAAGGAGCCCATGAAAGATGATCCGCAGGTCAGGCGACAAGGA					PREDICTED: Rattus norvegicus similar to adenylate kinase 2 (LOC364035), mRNA.					
Rattus norvegicus	RefSeq	GI_62653545	ILMN_288772	RGD1565368_PREDICTED	XM_001065101.1	XM_001065101.1		500983	109484557	XM_001065101.1	RGD1565368_predicted	XP_001065101.1	ILMN_1650736	0003990332	S	940	GCAACTCCCATTCTTCCACCTTTGATGCTGGGGCTGGCATTGCTCTCAAC				8q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1565368_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777705-S	ILMN_268465	OLR903	NM_001001361.1	NM_001001361.1		288808	47777705	NM_001001361.1	Olr903	NP_001001361.1	ILMN_1374859	0003130603	S	363	GGCCATCTGTAAACCTCTGCACTACATGACCATCATGAATAGCAGGGTGT	7	+	3530659-3530708	7q11	Rattus norvegicus olfactory receptor 903 (Olr903), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr903	Olr903
Rattus norvegicus	RefSeq	GI_62662496-S	ILMN_281923	RGD1563937_PREDICTED	XM_001072488.1	XM_001072488.1		364539	109504049	XM_001072488.1	RGD1563937_predicted	XP_001072488.1	ILMN_1370844	0006590075	S	923	CTCCCTGAGCCAGCTCTGTGCGTATGGGGACAGTGAGGACAGTGACAGCT				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900016D05 (predicted) (RGD1563937_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661400-S	ILMN_62795	LOC364335	XM_344359.2	XM_344359.2		364335	62661400	XM_344359.2	LOC364335	XP_344360.2	ILMN_1363218	0005270091	S	367	AGGACTCAGGCACCTACTTCTGTGCTGCTTATGCACAGTGCTCCCAGTAA				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor, variable region (LOC364335), mRNA.					
Rattus norvegicus	RefSeq	GI_57164068-S	ILMN_278731	V1RC28	NM_001009513.1	NM_001009513.1		494233	57164068	NM_001009513.1	V1rc28	NP_001009513.1	ILMN_1364241	0002640520	S	755	TCCTGTTAGGGGTCTATGACCCAGTCGTCCTGACTGTTCAGATATCTATG	4	+	87100155-87100204	4q24	Rattus norvegicus vomeronasal 1 receptor, C28 (V1rc28), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649506-S	ILMN_55279	DMBX1_PREDICTED	XM_233404.4	XM_233404.4		313512	109475263	XM_233404.4	Dmbx1_predicted	XP_233404.4	ILMN_1367307	0006110487	S	903	CTACCTAGGGGTCAACATGGCCCCACTGAGCTCCCTACACTGTCAGTCCT	5	-	136180460-136180509	5q36	PREDICTED: Rattus norvegicus diencephalon/mesencephalon homeobox 1 (predicted) (Dmbx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642282-S	ILMN_52090	PRKG1_MAPPED	XM_219805.4	XM_219805.4		54286	109460002	XM_219805.4	Prkg1_mapped	XP_219805.4	ILMN_1366129	0002320017	S	691	CCCGGGAAAGTGTTCGGGGAGCTGGCTATTCTTTACAACTGTACCCGGAC	1	-	235299240-235299289	1q52	PREDICTED: Rattus norvegicus protein kinase, cGMP-dependent, type 1 (mapped) (Prkg1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62642170-S	ILMN_52090	PRKG1_MAPPED	XM_219805.4	XM_219805.4		54286	109460002	XM_219805.4	Prkg1_mapped	XP_219805.4	ILMN_1372653	0005890097	S	2297	CTGCCAGCAAACCTGAGGGAAAGAGAGAAGATGAGTGCTCGGGGTCACCA	1	-	234420488-234420537	1q52	PREDICTED: Rattus norvegicus protein kinase, cGMP-dependent, type 1 (mapped) (Prkg1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62642871-S	ILMN_277450	PPWD1_PREDICTED	XM_001064235.1	XM_001064235.1		294711	109465884	XM_001064235.1	Ppwd1_predicted	XP_001064235.1	ILMN_1353828	0003170242	S	2162	CTGTGTTTGGCCGAGTGACTAAAGGAATGGAGGTGGTGCAGAGGATTTCC				2q13	PREDICTED: Rattus norvegicus peptidylprolyl isomerase domain and WD repeat containing 1 (predicted), transcript variant 2 (Ppwd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28212267-S	ILMN_68416	YRDC	NM_175604.2	NM_175604.2		319113	76781473	NM_175604.2	Yrdc	NP_783194.2	ILMN_1355382	0005390010	S	454	AGGACCTGTGACCCTGGTGATGGAACGCTCAGAGGAGCTCAACAAAGACC	5	+	144184550-144184599	5q36	Rattus norvegicus yrdC domain containing (E.coli) (Yrdc), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 51051] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124843	MGC124843
Rattus norvegicus	RefSeq	GI_62644225-S	ILMN_65407	LOC362026	XM_342327.2	XM_342327.2		362026	62644225	XM_342327.2	LOC362026	XP_342328.2	ILMN_1361582	0001780465	S	133	GTCTGGAGGGTCCTCAGAAAAATGGACATTGAACTGCCTGAGGATCCAGC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC362026), mRNA.					
Rattus norvegicus	RefSeq	GI_53850613-S	ILMN_291891	NASP	NM_001005543.1	NM_001005543.1		298441	53850613	NM_001005543.1	Nasp	NP_001005543.1	ILMN_1359661	0005690086	S	2403	CATGGAGGCAGAGGCTGAGAATCAGGCTGAGAGCCAGACAACAGCAGAAG	5	-	136884855-136884892:136885190-136885201	5q36	Rattus norvegicus nuclear autoantigenic sperm protein (histone-binding) (Nasp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits [goid 43486] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity [goid 42393] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]	MGC93869	MGC93869
Rattus norvegicus	RefSeq	GI_62718778-S	ILMN_62055	LOC501472	XM_580197.1	XM_580197.1		501472	62718778	XM_580197.1	LOC501472	XP_580197.1	ILMN_1349326	0000380059	S	54	CGGGGTGGTACAAACTTTTAAAAGTCCCAGGCAGTGGGCAGACCACGCTC					PREDICTED: Rattus norvegicus LOC501472 (LOC501472), mRNA.					
Rattus norvegicus	RefSeq	GI_62653760-S	ILMN_266475	RGD1311874_PREDICTED	XM_001072768.1	XM_001072768.1		300751	109484780	XM_001072768.1	RGD1311874_predicted	XP_001072768.1	ILMN_1361339	0005220603	S	479	TTCAGCAGAGCCCAGGCCCACGAGAGGCAGGTGAAAGCCAAGGGAAGGAT				8q24	PREDICTED: Rattus norvegicus hypothetical LOC300751 (predicted) (RGD1311874_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638658-S	ILMN_60500	LOC499052	XM_574332.1	XM_574332.1		499052	62638658	XM_574332.1	LOC499052	XP_574332.1	ILMN_1361961	0002360025	S	537	CTGCCCTTCAGCCATGATGGACTTCAGGATCTAACCTGAGGACCCTACAC					PREDICTED: Rattus norvegicus similar to kinesin family member 25 (LOC499052), mRNA.					
Rattus norvegicus	RefSeq	GI_62655610-A	ILMN_290907	GRIN2A	NM_012573.2	NM_012573.2		24409	31377497	NM_012573.2	Grin2a	NP_036705.2	ILMN_1376686	0000110372	S	5509	GCCAGCAGCCATGTGTAATCTGTAAGAAGTCCCATGCTATCTGTGTGTCC	10	+	6005714-6005763	10q11	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate 2A (Grin2a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IDA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence IEA]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence ISS]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another along an axis [goid 33058] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another along an axis [goid 33058] [evidence IEA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence IEA]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence ISS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IDA]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IEA]; Any process that modulates the establishment or extent of the postsynaptic membrane potential, which is generated by changes in the membrane potential of the post synaptic neuron that receives information at a synapse. The presynaptic neuron releases neurotransmitters into the synaptic cleft which bind to receptors on the postsynaptic neuron. After being bound by the neurotransmitters, these receptors can open or close an ion channel, allowing ions to enter or leave the cell and therefore altering the membrane potential of the postsynaptic neuron [goid 60078] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IEA];  [goid 4972] [evidence IMP]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IMP]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IMP]; Catalysis of the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion [goid 22843] [evidence IMP]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]	NMDAR2A; NR2A	NMDAR2A; NR2A
Rattus norvegicus	RefSeq	GI_62647533	ILMN_48373	LOC502803	XM_578302.1	XM_578302.1		502803	62647533	XM_578302.1	LOC502803	XP_578302.1	ILMN_1649752	0001580377	S	134	CCAGTCAGAACATCAATGGTTGGTTAGCCTGGTACCAGCAGAAACCAGGG					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502803), mRNA.					
Rattus norvegicus	RefSeq	GI_62646851-S	ILMN_61605	RPA3_PREDICTED	XM_216097.4	XM_216097.4		296883	109471732	XM_216097.4	Rpa3_predicted	XP_216097.1	ILMN_1366297	0004070093	S	13	CCTGCGGGTTGTGAGTTTTGGCGGCAGAATCATGGTGGACATAATGGAAC	4	-	33307315-33307334:33307335-33307364	4q21	PREDICTED: Rattus norvegicus replication protein A3 (predicted) (Rpa3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644191-S	ILMN_63810	RGD1564454_PREDICTED	XM_575014.2	XM_575014.2		499690	109465448	XM_575014.2	RGD1564454_predicted	XP_575014.2	ILMN_1353110	0006200121	S	838	CTGAAAACTGCGGCTCACGGGGGAATGATACAGGCTTTGTTCAGACTTCC	2	-	204125517-204125566	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010200O16 (predicted) (RGD1564454_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664042-S	ILMN_52828	CABLES1_PREDICTED	XM_226165.4	XM_226165.4		307585	109506305	XM_226165.4	Cables1_predicted	XP_226165.4	ILMN_1356148	0006130603	S	1306	AAGAGAGAGATGCGGAAGCTCGCCCAGGAGGACTGTGGTTTTGAGGAGCC	18	+	3525500-3525549	18p13	PREDICTED: Rattus norvegicus Cdk5 and Abl enzyme substrate 1 (predicted) (Cables1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650721-S	ILMN_266154	LOC368070	XM_001079732.1	XM_001079732.1		368070	109479425	XM_001079732.1	LOC368070	XP_001079732.1	ILMN_1349327	0005890184	S	2999	GTGTGTCATCTGTTAATAGTTATCACCTCCTGGGTGGTTAGGGGGTGGGT				6q23	PREDICTED: Rattus norvegicus similar to Pinin (LOC368070), mRNA.					
Rattus norvegicus	RefSeq	GI_62653849-S	ILMN_50540	LACTB_PREDICTED	XM_217181.4	XM_217181.4		300803	109483667	XM_217181.4	Lactb_predicted	XP_217181.2	ILMN_1356536	0003940021	S	1723	TAAAGACAGAGCCGACTAATCCTAACCGCGGCACAGGTCCACAGTGAGCC	8	-	71267078-71267109:71267110-71267127	8q24	PREDICTED: Rattus norvegicus lactamase, beta (predicted) (Lactb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638612-S	ILMN_58282	LOC502241	XM_577701.1	XM_577701.1		502241	62638612	XM_577701.1	LOC502241	XP_577701.1	ILMN_1366957	0001230687	S	1016	TGATGGCTGCACAGCCCAGGCACAGCAGGTGAGTCCCATTGCAGCCCCAT				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502241), mRNA.					
Rattus norvegicus	RefSeq	GI_62664302-S	ILMN_56160	PCDHGA6_PREDICTED	XM_577612.2	XM_577612.2		502156	109506509	XM_577612.2	Pcdhga6_predicted	XP_577612.2	ILMN_1366796	0000050136	S	2335	CTTCTTTGCTTTTGTTACGGGGCTGCTGGTGCTCAGGCTGTGGCACTGGC	18	+	30619106-30619155	18p11	PREDICTED: Rattus norvegicus protocadherin gamma subfamily A, 6 (predicted) (Pcdhga6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646430-S	ILMN_62050	LOC499946	XM_580037.1	XM_580037.1		499946	62646430	XM_580037.1	LOC499946	XP_580037.1	ILMN_1361330	0000840273	S	345	GAAGGAGACAAAACCCTTCCTCCGTGCCAGTGGATCTCCTCAGCAGGACC					PREDICTED: Rattus norvegicus LOC499946 (LOC499946), mRNA.					
Rattus norvegicus	RefSeq	GI_57527906-S	ILMN_280823	SRGN	NM_020074.2	NM_020074.2		56782	57527906	NM_020074.2	Srgn	NP_064459.1	ILMN_1360748	0006650026	S	973	GGTGAGGGGTATATATTCTGTTATGGCCATTGGATATGACGGGGAAGACC	20	-	29746995-29747044	20q11	Rattus norvegicus serglycin (Srgn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence ISS]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone mineralization [goid 30502] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a secretory granule in a mast cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion [goid 33364] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a secretory granule in a T cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion [goid 33371] [evidence ISS]; A process by which a protease is maintained in a secretory granule in a mast cell and prevented from moving elsewhere [goid 33373] [evidence ISS]; A process by which the protease granyme B is maintained in a secretory granule in a T cell and prevented from moving elsewhere [goid 33382] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661740-S	ILMN_262408	RGD1566076_PREDICTED	XM_001072187.1	XM_001072187.1		498546	109502726	XM_001072187.1	RGD1566076_predicted	XP_001072187.1	ILMN_1358457	0005270300	S	370	GCGGGTCTATAGGAAGCGAACAAGCCATGGGTGATAGAAAGGCGGTCCCC				15q11	PREDICTED: Rattus norvegicus similar to Chromosome 13 open reading frame 21 (predicted) (RGD1566076_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978790-S	ILMN_287065	EDN1	NM_012548.1	NM_012548.1		24323	6978790	NM_012548.1	Edn1	NP_036680.1	ILMN_1363231	0002450095	S	1096	GCATCATCCAGAGAGCCAGGAGATTCCATAGCAGGGCGGAGTTTCTGTAG	17	-	28304130-28304179	17p12	Rattus norvegicus endothelin 1 (Edn1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process by which endothelin modulates the force with which blood passes through the circulatory system. Endothelin is a hormone that is released by the endothelium, and it is a vasoconstrictor [goid 3100] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that activates or increases the frequency or rate of heart contraction [goid 10460] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IEA]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence IEA]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; The regulated release of a peptide hormone from secretory granules [goid 30072] [evidence IEA]; The regulated release of a peptide hormone from secretory granules [goid 30072] [evidence ISS]; The process of renal water excretion [goid 30146] [evidence IEA]; The process of renal water excretion [goid 30146] [evidence ISS]; The process of renal sodium excretion [goid 30147] [evidence IEA]; The process of renal sodium excretion [goid 30147] [evidence ISS]; The directed movement of nitric oxide, nitrogen monoxide, into, out of, within or between cells [goid 30185] [evidence IEA]; The directed movement of nitric oxide, nitrogen monoxide, into, out of, within or between cells [goid 30185] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence ISS]; A G-protein coupled signaling pathway that results in the activation of phospholipase D, causing an increase in cellular levels of phosphatidic acid [goid 31583] [evidence IEA]; A G-protein coupled signaling pathway that results in the activation of phospholipase D, causing an increase in cellular levels of phosphatidic acid [goid 31583] [evidence ISS]; Any process resulting in the inhibition or termination of the activity of protein kinase C [goid 42313] [evidence IEA]; Any process resulting in the inhibition or termination of the activity of protein kinase C [goid 42313] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence IEA]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; Any process involved in the generation of rhythmic, synchronous excitatory synaptic inputs in a neural circuit [goid 43179] [evidence IEA]; Any process involved in the generation of rhythmic, synchronous excitatory synaptic inputs in a neural circuit [goid 43179] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence ISS]; Any process that increases cell size [goid 45793] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IDA]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEA]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IEA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric-oxide synthase [goid 51771] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric-oxide synthase [goid 51771] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IMP]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an endothelin A receptor [goid 31707] [evidence IMP]; Interacting selectively with an endothelin A receptor [goid 31707] [evidence IEA]; Interacting selectively with an endothelin A receptor [goid 31707] [evidence ISS]; Interacting selectively with an endothelin B receptor [goid 31708] [evidence IMP]; Interacting selectively with an endothelin B receptor [goid 31708] [evidence ISS]	Et1	Et1
Rattus norvegicus	RefSeq	GI_40018575-S	ILMN_293785	TOR1AIP2	NM_199100.1	NM_199100.1		304881	40018575	NM_199100.1	Tor1aip2	NP_954531.1	ILMN_1362870	0006840605	S	2204	TACCACTGCTGTCCTGCAAGGACTCTAACCGGCCACCAGGGCCATGTTTG	13	+	71100605-71100654	13q21	Rattus norvegicus torsin A interacting protein 2 (Tor1aip2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72610	MGC72610
Rattus norvegicus	RefSeq	GI_62653040-S	ILMN_54014	TROAP_PREDICTED	XM_238523.4	XM_238523.4		300219	109481289	XM_238523.4	Troap_predicted	XP_238523.4	ILMN_1370037	0003190037	S	1745	GGCAGCGCCTCAGAGCTTGTCTCACCACCATCCACTGTTTCCACGAGGCT	7	+	137859682-137859731	7q36	PREDICTED: Rattus norvegicus trophinin associated protein (tastin) (predicted) (Troap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653038-S	ILMN_54014	TROAP_PREDICTED	XM_238523.4	XM_238523.4		300219	109481289	XM_238523.4	Troap_predicted	XP_238523.4	ILMN_1353096	0001230369	S	433	CTGGCTCAGAGAGTGCTAGTGCGTGAGAGAAAGGGAGGCACCCACATCCA	7	+	137854382-137854431	7q36	PREDICTED: Rattus norvegicus trophinin associated protein (tastin) (predicted) (Troap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664844-S	ILMN_64487	RGD1561919_PREDICTED	XM_226269.3	XM_226269.3		307665	109507768	XM_226269.3	RGD1561919_predicted	XP_226269.1	ILMN_1349471	0004920368	S	59	GGTCCCCAAGAAGTTTCAGCACAGTCTGCGAGTCCTCGACACCAACGTCG	19	+	13615416-13615465	19p11	PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (predicted) (RGD1561919_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31343479-S	ILMN_268673	LDLR	NM_175762.2	NM_175762.2		300438	31343479	NM_175762.2	Ldlr	NP_786938.1	ILMN_1369382	0005290601	S	2691	CTACCAGAAGACCACGGAGGACGAGATCCACATTTGCCGCAGCCAGGATG	8	+	20845897-20845946	8q13	Rattus norvegicus low density lipoprotein receptor (Ldlr), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a clathrin-coated endocytic vesicle [goid 30669] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; Uptake of cholesterol into the blood by absorption from the small intestine [goid 30299] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The process by which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded [goid 34383] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42159] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence TAS]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence ISS]; Combining with a very-low-density lipoprotein to initiate a change in cell activity [goid 30229] [evidence ISS]	LDLRA	LDLRA
Rattus norvegicus	RefSeq	GI_62718570-S	ILMN_270129	LOC367582	XR_009491.1	XR_009491.1		367582	109519114	XR_009491.1	LOC367582		ILMN_1368115	0003120687	S	735	TTCCTCAAGGGAAAGACGCCCATCTCGCAAGTGCCATGGTTGGCCGAGCA					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367582), mRNA.					
Rattus norvegicus	RefSeq	GI_40789240-S	ILMN_275087	PCDHA3	NM_053941.1	NM_053941.1		116780	40789240	NM_053941.1	Pcdha3	NP_446393.1	ILMN_2040582	0002450612	S	1884	ACGTGTCCTGGATGAAACAGATGCCCCGCGACAGCGCCTATTAGTGTTGG	18	+	29678798-29678847	18p11	Rattus norvegicus protocadherin alpha 3 (Pcdha3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661972-S	ILMN_48895	LOC364409	XM_344425.2	XM_344425.2		364409	62661972	XM_344425.2	LOC364409	XP_344426.2	ILMN_1358858	0003130292	S	1160	AACCTCGGTGCTGAGCATCTGTGGGCAGCAGTGGAAGGTAGGACACTGTC				15p12	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC364409), mRNA.					
Rattus norvegicus	RefSeq	GI_62640997-S	ILMN_64606	LOC497735	XM_579514.1	XM_579514.1		497735	62640997	XM_579514.1	LOC497735	XP_579514.1	ILMN_1358272	0000670309	S	951	CGCTGCAACTTCAATTACCGACGCAGACGCCCAGAGAACCCTAAACCACA				1q35	PREDICTED: Rattus norvegicus similar to nuclease sensitive element binding protein 1 (LOC497735), mRNA.					
Rattus norvegicus	RefSeq	GI_62646392-S	ILMN_278136	LOC686212	XM_001072110.1	XM_001072110.1		686212	109471346	XM_001072110.1	LOC686212	XP_001072110.1	ILMN_1361977	0005860603	S	870	CATACTGGGACACCACCATCCTTGGCTCACTGTTCTCAGGGGCTTCGTGT					PREDICTED: Rattus norvegicus similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2), transcript variant 2 (LOC686212), mRNA.					
Rattus norvegicus	RefSeq	GI_16758423-S	ILMN_263960	POM121	NM_053622.1	NM_053622.1		113975	16758423	NM_053622.1	Pom121	NP_446074.1	ILMN_1365360	0003120673	S	5139	GCAGGGGTTAGGCTGGGTTGTATGGAACTGGAGAAGAGCTGGACCTCAAG	12	+	22448367-22448416	12q12	Rattus norvegicus nuclear pore membrane protein 121 (Pom121), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IDA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nuclear pore [goid 6999] [evidence IPI]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the nuclear pore complex [goid 17056] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62655943-S	ILMN_263018	RGD1562576_PREDICTED	XM_001064524.1	XM_001064524.1		303029	109490484	XM_001064524.1	RGD1562576_predicted	XP_001064524.1	ILMN_1360041	0004670601	S	3952	CCATTTAACCTGAAGAAAAGCCGGAGGCGGCAAGTTGTGTTTGGAGGCGG				10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1562576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664981-S	ILMN_48411	LOC498926	XM_579886.1	XM_579886.1		498926	62664981	XM_579886.1	LOC498926	XP_579886.1	ILMN_1368611	0004780301	S	907	CCTTAAGGAGGCAGGTTCTCCACAACAGTGCATGCTGGGTTCCAGCCTGG					PREDICTED: Rattus norvegicus LOC498926 (LOC498926), mRNA.					
Rattus norvegicus	RefSeq	GI_62661398	ILMN_62704	LOC498506	XM_573769.1	XM_573769.1		498506	62661398	XM_573769.1	LOC498506	XP_573769.1	ILMN_1650320	0001450451	S	90	CAGTCTCACAGAGGGGTCACCTGTGGTGCTGAACTGTACCTTTCAGACTG				15p14	PREDICTED: Rattus norvegicus similar to variable region-alpha 4 (LOC498506), mRNA.					
Rattus norvegicus	RefSeq	GI_62655307-S	ILMN_56131	RGD1310683_PREDICTED	XM_237211.4	XM_237211.4		316452	109486204	XM_237211.4	RGD1310683_predicted	XP_237211.4	ILMN_1348971	0006550369	S	609	GGGAGCCATTCTTCTTGCCTCCAAGGTTTGGGATGATCAGGCTGTATGGA	9	+	63370024-63370073	9q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40432 (predicted) (RGD1310683_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648922-S	ILMN_278151	FRMPD1_PREDICTED	XM_001071316.1	XM_001071316.1		313244	109476424	XM_001071316.1	Frmpd1_predicted	XP_001071316.1	ILMN_1349331	0001190110	S	4539	TTCCACCCGGCACAGGGAAGTGGCCGGGAACCTGAGGGACGTGGTATATA				5q22	PREDICTED: Rattus norvegicus FERM and PDZ domain containing 1 (predicted) (Frmpd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50845393-S	ILMN_301177	LY6G5C	NM_198739.2	NM_198739.2		294245	50845393	NM_198739.2	Ly6g5c	NP_942034.2	ILMN_1358791	0005670707	S	324	GAGCAGATGGTGGATTGCTCCTATACTCGGGCTTCCCCTGTGTTCGGCTT	20	-	3773489-3773538	20p12	Rattus norvegicus lymphocyte antigen 6 complex, locus G5C (Ly6g5c), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			re8	re8
Rattus norvegicus	RefSeq	GI_9507092-S	ILMN_291069	SGK	NM_019232.1	NM_019232.1		29517	9507092	NM_019232.1	Sgk	NP_062105.1	ILMN_1349269	0004200156	S	2107	GGGTTTTTATGGACCAATGCCCCAGTTGTCAGTCAGAGCCGTTGGTGTTC	1	-	23501544-23501593	1p12	Rattus norvegicus serum/glucocorticoid regulated kinase (Sgk), mRNA.					
Rattus norvegicus	RefSeq	GI_62646702-S	ILMN_54435	SEMA3C_PREDICTED	XM_231381.4	XM_231381.4		296787	109471622	XM_231381.4	Sema3c_predicted	XP_231381.4	ILMN_1354972	0001850300	S	2398	GGGGGAGGAGCCACAGAAGATGAGAGGGGACTATGGCAAACTAAAGGCGC	4	-	13742209-13742258	4q11	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (predicted) (Sema3c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659564-S	ILMN_265420	LOC680069	XM_001054790.1	XM_001054790.1		680069	109498062	XM_001054790.1	LOC680069	XP_001054790.1	ILMN_1363354	0004540176	S	1929	CTGCTGCGATCCTGAAGTGACTGATGTCCGAAAGACTTGCTTTGACCCTG	13	-	74127071-74127120	13q22	PREDICTED: Rattus norvegicus similar to Pappalysin-2 precursor (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E), transcript variant 1 (LOC680069), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645238-S	ILMN_288559	CDCA7	NM_001025693.1	NM_001025693.1		311742	71043615	NM_001025693.1	Cdca7	NP_001020864.1	ILMN_1369207	0006200180	S	1548	CGCAACGGTTGTGATGACTTGCCGAGAGCAGCCCTTTAACTTGCTTACCC	3	+	54958344-54958393	3q22	Rattus norvegicus cell division cycle associated 7 (Cdca7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		MGC112656	MGC112656
Rattus norvegicus	RefSeq	Rn.16408	ILMN_288559	CDCA7	NM_001025693.1	NM_001025693.1		311742	71043615	NM_001025693.1	Cdca7	NP_001020864.1	ILMN_1530501	0005900450	S	2248	AATCCTTCAGTGTAAATACAGCCTTTTGCTCTGTAATGCTTTTATACAAA	3	+	54959044-54959093	3q22	Rattus norvegicus cell division cycle associated 7 (Cdca7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		MGC112656	MGC112656
Rattus norvegicus	RefSeq	GI_62639124-S	ILMN_269357	RGD1562312_PREDICTED	XM_001067678.1	XM_001067678.1		499092	109461352	XM_001067678.1	RGD1562312_predicted	XP_001067678.1	ILMN_1354519	0000050050	S	504	GATGTGGACCAACACTGCCGCGGATGACAAGCAGCCCTATGGGAAGATGG					PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1562312_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638614-S	ILMN_58374	LOC365117	XM_344821.2	XM_344821.2		365117	62638614	XM_344821.2	LOC365117	XP_344822.2	ILMN_1368782	0005690278	S	128	TCAAACGTCCCGTGGGAAAATCCTCTGTCAAGGGCAGGTGATGCCTCTTG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365117), mRNA.					
Rattus norvegicus	RefSeq	GI_62656664-S	ILMN_62244	NLE1_PREDICTED	XM_220770.4	XM_220770.4		303372	109488651	XM_220770.4	Nle1_predicted	XP_220770.3	ILMN_1373196	0002850594	S	1499	ACTCAGGCTCTGCCCACTCTGCCAGTAACCAAGGAGACCTGCCCAGAACA	10	-	71117304-71117353	10q26	PREDICTED: Rattus norvegicus notchless homolog 1 (Drosophila) (predicted) (Nle1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54114996-S	ILMN_271597	SORBS3	NM_001005762.1	NM_001005762.1		282843	54114996	NM_001005762.1	Sorbs3	NP_001005762.1	ILMN_1372136	0005340176	S	2360	CATGGCAGTATGGAGCCAACGAGGATCGGGTGGGGAGCAGTAGCACTATG	15	-	50580206-50580255	15p11	Rattus norvegicus sorbin and SH3 domain containing 3 (Sorbs3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence IEA]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence IEA]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence ISS]	Sh3d4; MGC94509	Sh3d4; MGC94509
Rattus norvegicus	RefSeq	GI_57114225-S	ILMN_279866	V1RA2	NM_001008915.1	NM_001008915.1		494265	57114225	NM_001008915.1	V1ra2	NP_001008915.1	ILMN_1375180	0003440176	S	876	CGTGAGCCATATCTATGCCACAGTCAGCCCTTTTGTGTTTATGAGCAATG	4	-	123949069-123949118	4q34	Rattus norvegicus vomeronasal 1 receptor, A2 (V1ra2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642352-S	ILMN_60142	LOC365463	XM_577867.1	XM_577867.1		365463	62642352	XM_577867.1	LOC365463	XP_577867.1	ILMN_1367763	0000460670	S	0	ATGACCAAGTCCAACCACTGCTGCCAAGAAGATGTGTGGCGGGCCATCTG					PREDICTED: Rattus norvegicus similar to Cystatin B (Liver thiol proteinase inhibitor) (Stefin B) (Cystatin beta) (LOC365463), mRNA.					
Rattus norvegicus	RefSeq	GI_62642836-S	ILMN_63445	RGD1561673_PREDICTED	XM_574843.2	XM_574843.2		499518	109464290	XM_574843.2	RGD1561673_predicted	XP_574843.2	ILMN_1364886	0006020333	S	2218	CCTCAAGCTGACTTCTGGTGGGCAAGTGGGCATGTGTGCGAGAACCTGTG	2	+	31494693-31494742	2q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830436D01 (predicted) (RGD1561673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663211-S	ILMN_276417	PRR7	XM_001069340.1	XM_001069340.1		498704	109505464	XM_001069340.1	Prr7	XP_001069340.1	ILMN_1361375	0003520128	S	1170	TCCCGAGCCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAAT				17p14	PREDICTED: Rattus norvegicus proline rich 7 (Prr7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62653174-S	ILMN_61621	LOC300314	XM_238532.3	XM_238532.3		300314	62653174	XM_238532.3	LOC300314	XP_238532.3	ILMN_1350756	0001170097	S	1290	TTGTCCGGGAGGCTACAGAACGAACGGCTCAGGGGCTCCAACTCTTCTAC					PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC31278 (LOC300314), mRNA.					
Rattus norvegicus	RefSeq	GI_62639357-S	ILMN_295098	RGD1563574_PREDICTED	XM_001079138.1	XM_001079138.1		499126	109461665	XM_001079138.1	RGD1563574_predicted	XP_001079138.1	ILMN_1349227	0005270161	S	1840	CCACACGACACTTAGCTGCAAGATATGGGCTGCCTGCCACCTGGTCTACC				1q21	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC30332 (predicted) (RGD1563574_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661994-S	ILMN_49873	LOC502021	XM_577449.1	XM_577449.1		502021	62661994	XM_577449.1	LOC502021	XP_577449.1	ILMN_1374192	0000060398	S	1638	AGACGAACCCCCGATGTCCAGCAGGGTCTTGCTTCAGCAGTGGATTGGAG					PREDICTED: Rattus norvegicus similar to LOC283514 protein (LOC502021), mRNA.					
Rattus norvegicus	RefSeq	GI_62649885-S	ILMN_52458	EPHA8	XM_342952.3	XM_342952.3		60589	109475685	XM_342952.3	Epha8	XP_342953.3	ILMN_1350998	0001340300	S	2827	GTTCGTGCCCTCGGCATCACCCTCATGGGCCACCAGAAGAAAATCCTTGG	5	-	155696453-155696502	5q36	PREDICTED: Rattus norvegicus Eph receptor A8 (Epha8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40538851-S	ILMN_264576	HMGCR	NM_013134.2	NM_013134.2		25675	40538851	NM_013134.2	Hmgcr	NP_037266.2	ILMN_1351282	0001660717	S	4139	CCTGAGCTTGTCGTGGAAGTGGTAGTAAACCGCATTGAGTGTTGATGCTG	2	-	27127620-27127669	2q12	Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A reductase (Hmgcr), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The pathway that converts acetate, in the form of acetyl-CoA, to farnesyl diphosphate (FPP) through a series of mevalonate intermediates. Farnesyl diphosphate is an important substrate for other essential pathways, such as biosynthesis of sterols [goid 10142] [evidence TAS]; The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester [goid 15936] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP+ = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H+ [goid 4420] [evidence ISS]; Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP+ = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H+ [goid 4420] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD+ = 3-hydroxy-3-methylglutaryl-CoA + 2 NADH + 2 H+ [goid 42282] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	3H3M; 3	3H3M; 3
Rattus norvegicus	RefSeq	GI_62667047-S	ILMN_63685	LOC363477	XM_343798.2	XM_343798.2		363477	62667047	XM_343798.2	LOC363477	XP_343799.2	ILMN_1361492	0000780546	S	458	CAGCATCATCTCAACTGAGATAGGCCACTCATCTGCCCAGTTCCTTCAGC					PREDICTED: Rattus norvegicus similar to Beta-sarcoglycan (Beta-SG) (43 kDa dystrophin-associated glycoprotein) (43DAG) (A3b) (LOC363477), mRNA.					
Rattus norvegicus	RefSeq	GI_51036676-S	ILMN_278126	LMBRD1	NM_139189.2	NM_139189.2		246046	51036676	NM_139189.2	Lmbrd1	NP_631928.2	ILMN_1358501	0002350338	S	2109	GCCGCGTATTGCTTGTGGATAAGCGGAACTCTCATGGCAGCTTGCTTTCA	9	+	23511093-23511142	9q13	Rattus norvegicus LMBR1 domain containing 1 (Lmbrd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62650123-S	ILMN_64451	SSFA1_PREDICTED	XM_345601.2	XM_345601.2		366501	62650123	XM_345601.2	Ssfa1_predicted	XP_345602.2	ILMN_1373067	0001770114	S	884	TAGAAGTAAAAAGTGGGCTGTTATGGAGTCGTGGCGAGGCCGGCGCGTCC					PREDICTED: Rattus norvegicus sperm specific antigen 1 (predicted) (Ssfa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666574-S	ILMN_60568	LOC367731	XM_578970.1	XM_578970.1		367731	62666574	XM_578970.1	LOC367731	XP_578970.1	ILMN_1374823	0002510128	S	988	AGAGAAAGCAGGAGAGGGAACGGAAGAAGAGGAAGTGCAAGGTGCTCTGG				Xq13	PREDICTED: Rattus norvegicus similar to nuclear protein (LOC367731), mRNA.					
Rattus norvegicus	RefSeq	GI_27685706-S	ILMN_264659	RGD1562724_PREDICTED	XM_001068552.1	XM_001068552.1		291113	109505731	XM_001068552.1	RGD1562724_predicted	XP_001068552.1	ILMN_1356624	0003140390	S	100	GGAGGAGTGAAGAGACCTCATTGTTACAGGTCCAATGCAGTGGCACTCCG				17p11	PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (predicted) (RGD1562724_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742752-S	ILMN_284300	IFT74	NM_001007001.1	NM_001007001.1		313365	55742752	NM_001007001.1	Ift74	NP_001007002.1	ILMN_1352412	0006650136	S	1750	GACACATGCTCAGCTTACAAACTTGGAGAGGAAGTGGCAGCATCTGGAGC	5	+	114998187-114998199:115002452-115002488	5q33	Rattus norvegicus intraflagellar transport 74 homolog (Chlamydomonas) (Ift74), mRNA.	Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence IEA]			MGC94371; Ccdc2	MGC94371; Ccdc2
Rattus norvegicus	RefSeq	GI_62638608-S	ILMN_263254	RGD1564755_PREDICTED	XM_001053677.1	XM_001053677.1		298457	109460820	XM_001053677.1	RGD1564755_predicted	XP_001053677.1	ILMN_1367762	0000450215	S	2063	ACCTCTGCTTTTTGGCACTTGGAAGTTGTGTCATGGCCTTCTTGTCCAGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (predicted) (RGD1564755_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577848-S	ILMN_294556	OLR1199	NM_001000819.1	NM_001000819.1		405107	47577848	NM_001000819.1	Olr1199	NP_001000819.1	ILMN_1371472	0006400446	S	468	GGCCCACACCATATCCATGGGGAGACTGACCTTCTGTGCTGACAACCTTG	8	+	39124685-39124734	8q21	Rattus norvegicus olfactory receptor 1199 (Olr1199), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1199	Olr1199
Rattus norvegicus	RefSeq	GI_62651796-S	ILMN_273474	BRD4	XM_001077931.1	XM_001077931.1		362844	109481649	XM_001077931.1	Brd4	XP_001077931.1	ILMN_1372828	0006770156	S	4874	TCGCCTGGGGAGTAAGGCCACCAACCAAAGTCAGTCCTTCCCACCTGTGT				7q11	PREDICTED: Rattus norvegicus bromodomain containing 4 (Brd4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659178-S	ILMN_269756	SERPINB13_PREDICTED	XM_222497.3	XM_222497.3		304690	62659178	XM_222497.3	Serpinb13_predicted	XP_222497.2	ILMN_1350373	0005050093	S	1120	TTCCTGCACAGATCGTTCCTGGTGGTGACTGAGGAAGGCGTTGAGGCCAC	13	+	13209025-13209074	13p13	PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13 (predicted) (Serpinb13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655158-S	ILMN_69518	LOC501155	XM_580166.1	XM_580166.1		501155	62655158	XM_580166.1	LOC501155	XP_580166.1	ILMN_1354794	0003130577	S	88	GTCCGGTAATCAGTGTACTGGCTAAAGGGGCTGGACCCTCTCCTCCTGTC					PREDICTED: Rattus norvegicus LOC501155 (LOC501155), mRNA.					
Rattus norvegicus	RefSeq	GI_13242268-S	ILMN_283909	SLC6A1	NM_024371.1	NM_024371.1		79212	13242268	NM_024371.1	Slc6a1	NP_077347.1	ILMN_1363429	0002640300	S	3328	TCTTCCCGAGGCCACTTGTAGCAGGGTCGTGTGGCTGAGGCATCTACCTG	4	+	150264467-150264516	4q42	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, GABA), member 1 (Slc6a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus [goid 9744] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine stimulus. Aside from DNA and RNA, purines are biochemically significant components in a number of other important biomolecules, such as ATP, GTP, cyclic AMP, NADH, and coenzyme A [goid 14074] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a cell or organelle [goid 51939] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Gabt1	Gabt1
Rattus norvegicus	RefSeq	GI_47577670-S	ILMN_287459	OLR562	NM_001000667.1	NM_001000667.1		404869	47577670	NM_001000667.1	Olr562	NP_001000667.1	ILMN_1373817	0002470706	S	702	GGCATCAGCCAAAAGTCGAGCCAAAGCCTTCTCTACCTGCTCATCCCATC	3	+	71085065-71085114	3q24	Rattus norvegicus olfactory receptor 562 (Olr562), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr562	Olr562
Rattus norvegicus	RefSeq	GI_62667126-S	ILMN_263248	LOC680162	XR_005658.1	XR_005658.1		680162	109458859	XR_005658.1	LOC680162		ILMN_1355650	0004050035	S	536	GGAGGGAGAAGATGGGGAAAGGGAAGGAGGCCTAAAAGAGAAACCAGATG	1	+	118081784-118081833	1q22	PREDICTED: Rattus norvegicus similar to Nucleosome binding protein 1 (Nucleosome binding protein 45) (NBP-45) (GARP45 protein) (LOC680162), mRNA.					
Rattus norvegicus	RefSeq	GI_62662831	ILMN_49803	LOC361165	XM_341450.2	XM_341450.2		361165	62662831	XM_341450.2	LOC361165	XP_341451.2	ILMN_1650765	0000870575	S	1743	TCCAGGTGAGTTAGCGGTCGCCAGATGGAAGCTGGAGGATGAGCAGTCAC					PREDICTED: Rattus norvegicus similar to D8Ertd354e protein (LOC361165), mRNA.					
Rattus norvegicus	RefSeq	GI_62667543-S	ILMN_271203	PDZD4_PREDICTED	XM_001057431.1	XM_001057431.1		293856	109462339	XM_001057431.1	Pdzd4_predicted	XP_001057431.1	ILMN_1356616	0001190133	S	2759	GTGCTTGCCAATAGTTGTTTTCTGTTTTGTGGACCTGCTCTGGGGGCTGG				Xq37	PREDICTED: Rattus norvegicus PDZ domain containing 4 (predicted) (Pdzd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865971-A	ILMN_292470	TTLL1	NM_001012200.1	NM_001012200.1		362969	58865971	NM_001012200.1	Ttll1	NP_001012200.1	ILMN_1376505	0003130402	S	1125	TGCAGTCTCTCAAGGCTGTGGCACCTGTGATGAACAACGACAAGCACTGC	7	+	121437477-121437499:121441351-121441377	7q34	Rattus norvegicus tubulin tyrosine ligase-like 1 (Ttll1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34868855	ILMN_292470	TTLL1	NM_001012200.1	NM_001012200.1		362969	58865971	NM_001012200.1	Ttll1	NP_001012200.1	ILMN_1650455	0002900402	S	1468	GGGGCCCAGAACAGGCCGCTCGAGAGACTCAGGAAGAAATGTCCTCACAA				7q34	Rattus norvegicus tubulin tyrosine ligase-like 1 (Ttll1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31077117	ILMN_57177	PPP2R5B	NM_181379.2	NM_181379.2		309179	60593006	NM_181379.2	Ppp2r5b	NP_852044.1	ILMN_1649757	0006040487	S	1232	CACTGTGCTGCCTGCGGTATTTGGGACCCTCTACCAAGTGTCCAAGGAGC	1	-	209004017-209004066	1q43	Rattus norvegicus protein phosphatase 2, regulatory subunit B (B56), beta isoform (Ppp2r5b), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639436-S	ILMN_55165	ZFP84_PREDICTED	XM_218463.3	XM_218463.3		308482	62639436	XM_218463.3	Zfp84_predicted	XP_218463.3	ILMN_1362498	0002360672	S	2572	GGCTCTTACAGGTGAAGAAGCACCAGAGAGTGCACACAGTGGGGGAGATC				1q21	PREDICTED: Rattus norvegicus zinc finger protein 84 (predicted) (Zfp84_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644405-S	ILMN_288222	LOC680460	XM_001057281.1	XM_001057281.1		680460	109465600	XM_001057281.1	LOC680460	XP_001057281.1	ILMN_1358520	0006900068	S	2816	CTAAGCACACACAGTACCTATTGGGCTGTGCACAAGTGGGAGCTGTGCAG	2	+	230990562-230990611	2q43	PREDICTED: Rattus norvegicus similar to GC-rich promoter binding protein 1-like 1 (LOC680460), mRNA.					
Rattus norvegicus	RefSeq	GI_62649462	ILMN_288222	LOC680460	XM_001057281.1	XM_001057281.1		680460	109465600	XM_001057281.1	LOC680460	XP_001057281.1	ILMN_1650756	0001740647	S	13	GAGCTTTGTTATGGTTGTGGGCTAGTCACCTCTGCTGGTCGGAGAAGCTG	2	+	230987759-230987808	2q43	PREDICTED: Rattus norvegicus similar to GC-rich promoter binding protein 1-like 1 (LOC680460), mRNA.					
Rattus norvegicus	RefSeq	GI_62661714-S	ILMN_57242	XPO7	XM_341353.3	XM_341353.3		361070	109501737	XM_341353.3	Xpo7	XP_341354.2	ILMN_1357666	0000540500	S	4684	CTCCTCTGGCGACTGTGTGGTGAATCTTTTCTTGCGTGATCAGGTTGCGG	15	-	51069186-51069235	15p11	PREDICTED: Rattus norvegicus exportin 7 (Xpo7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Combining with a nuclear export signal to initiate a change in cell activity [goid 5049] [evidence IEA]; Combining with a nuclear export signal to initiate a change in cell activity [goid 5049] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645761-S	ILMN_51530	LOC502663	XM_578157.1	XM_578157.1		502663	62645761	XM_578157.1	LOC502663	XP_578157.1	ILMN_1359913	0000940463	S	819	GGCGCTGGTGTGTACGTGGAGCGGCCCCGGCGACTCACTTTCTACCTTCT				3q35	PREDICTED: Rattus norvegicus similar to Cdc2l1 protein (LOC502663), mRNA.					
Rattus norvegicus	RefSeq	GI_18249940-S	ILMN_277147	CHRM1	NM_080773.1	NM_080773.1		25229	18249940	NM_080773.1	Chrm1	NP_542951.1	ILMN_1361649	0001230093	S	1016	AGGGCCAAAAACCCCGAGGGAAGGAACAGCTGGCCAAGAGAAAGACCTTC	1	+	211352753-211352802	1q43	Rattus norvegicus cholinergic receptor, muscarinic 1 (Chrm1), mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence TAS]	The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IDA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IDA]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4981] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62644071-S	ILMN_273742	SEC22B	NM_001025686.1	NM_001025686.1		310710	71043603	NM_001025686.1	Sec22b	NP_001020857.1	ILMN_1350093	0003870592	S	1017	CTTCCCTCCCCAGTACATTTGTGAGACAGCAGAGATGGGGCGGTCTCTCT	2	+	192763583-192763632	2q34	Rattus norvegicus SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (Sec22b), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112717	MGC112717
Rattus norvegicus	RefSeq	GI_62718167-S	ILMN_68977	LOC501308	XM_576721.1	XM_576721.1		501308	62718167	XM_576721.1	LOC501308	XP_576721.1	ILMN_1370558	0001690279	S	78	AGTTTCATCACCCGCCTGCTGGAGCATTTTGGGAGGGGGAACGTCGATTC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501308), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661771-S	ILMN_60465	LOC498551	XM_573826.1	XM_573826.1		498551	62661771	XM_573826.1	LOC498551	XP_573826.1	ILMN_1355837	0002230377	S	2074	CCCTGGGACAGAACAGTTTGGCAGTGATTGGTCTCTGAATTACCCATGGC					PREDICTED: Rattus norvegicus similar to LRRGT00108 (LOC498551), mRNA.					
Rattus norvegicus	RefSeq	GI_62659948-S	ILMN_57056	LOC364067	XM_344183.2	XM_344183.2		364067	62659948	XM_344183.2	LOC364067	XP_344184.2	ILMN_1349087	0006380278	S	486	GCCGCCCCTATCCTGAGCCCACGACACACATACACAGACACACCGAATAA					PREDICTED: Rattus norvegicus similar to UDP-glucuronate decarboxylase 1 (LOC364067), mRNA.					
Rattus norvegicus	RefSeq	GI_62653227-S	ILMN_65248	MTMR2_PREDICTED	XM_235822.4	XM_235822.4		315422	109483051	XM_235822.4	Mtmr2_predicted	XP_235822.4	ILMN_1367638	0000670341	S	1806	TGGGAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACC	8	+	10605285-10605334	8q11	PREDICTED: Rattus norvegicus myotubularin related protein 2 (predicted) (Mtmr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653750-S	ILMN_267722	STRA6	NM_001029924.1	NM_001029924.1		363071	71361636	NM_001029924.1	Stra6	NP_001025095.1	ILMN_1363735	0005910377	S	1882	TTGCTACAGACCAAGGACCTGATGGCCAAGGGAGCAGGACCCAAAGGCAG	8	+	61938989-61939038	8q24	Rattus norvegicus stimulated by retinoic acid gene 6 (Stra6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC114408; RGD1307551	MGC114408; RGD1307551
Rattus norvegicus	RefSeq	GI_32140177-A	ILMN_265470	NNAT	NM_181687.1	NM_181687.1		94270	32140177	NM_181687.1	Nnat	NP_859015.1	ILMN_2040120	0005860500	A	538	CGCACAGATCCTACCATGGAGAGCTAACACCCCACCAACCAGCAGAATGG	3	+	148271220-148271269	3q42	Rattus norvegicus neuronatin (Nnat), transcript variant 2, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]		MGC156562; Peg5	MGC156562; Peg5
Rattus norvegicus	RefSeq	GI_62642221-S	ILMN_272755	CYP26C1_PREDICTED	XM_217935.3	XM_217935.3		308190	62642221	XM_217935.3	Cyp26c1_predicted	XP_217935.3	ILMN_1373749	0000380048	S	1285	TTTGGCGTGGAGAGTGAAGATGCGCGGGGCTCTGGTGGCCGCTTTCATTA	1	-	241954473-241954522	1q53	PREDICTED: Rattus norvegicus cytochrome P450, family 26, subfamily C, polypeptide 1 (predicted) (Cyp26c1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643620-S	ILMN_56559	LOC502526	XM_578011.1	XM_578011.1		502526	62643620	XM_578011.1	LOC502526	XP_578011.1	ILMN_1350247	0004060309	S	55	GAAATAAGAAGCCAGAAAGACAGGCGACAAGCTCTGCCAGCATCCAGCTG					PREDICTED: Rattus norvegicus similar to GA18990-PA (LOC502526), mRNA.					
Rattus norvegicus	RefSeq	GI_62654918-S	ILMN_62598	SEMA4C_PREDICTED	XM_237095.4	XM_237095.4		301346	109485950	XM_237095.4	Sema4c_predicted	XP_237095.4	ILMN_1364995	0005270546	S	2635	CGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAAGGATCTGGGC	9	-	35493629-35493678	9q21	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C (predicted) (Sema4c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649786-S	ILMN_70118	RGD1563673_PREDICTED	XM_342935.3	XM_342935.3		362616	109475614	XM_342935.3	RGD1563673_predicted	XP_342936.2	ILMN_1351389	0005420059	S	647	ACGCTTCCTCAAGGCCAAGGACAGCACTTACCAGACGCTAATCTGACCCC	5	-	151901790-151901794:151901795-151901801:151902321-151902358	5q36	PREDICTED: Rattus norvegicus similar to EAPG6122 (predicted) (RGD1563673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27720210-S	ILMN_283935	CIB2	NM_001015010.1	NM_001015010.1		300719	62543506	NM_001015010.1	Cib2	NP_001015010.1	ILMN_2040592	0006510255	S	1071	CCTTGCAGGAGAGGTAAGGCTGAATTATCTGTGTGCTGGGCAGGCACTCC	8	-	58094228-58094277	8q24	Rattus norvegicus calcium and integrin binding family member 2 (Cib2), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC109329	MGC109329
Rattus norvegicus	RefSeq	Rn.46320	ILMN_283935	CIB2	NM_001015010.1	NM_001015010.1		300719	62543506	NM_001015010.1	Cib2	NP_001015010.1	ILMN_1530412	0006100278	S	513	TTCAAGATCTATGACTTCAACACTGACAATTTCATCTGTAAAGAAGACTT	8	-	58095152-58095189:58097540-58097551	8q24	Rattus norvegicus calcium and integrin binding family member 2 (Cib2), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC109329	MGC109329
Rattus norvegicus	RefSeq	GI_62647543-S	ILMN_48788	LOC502808	XM_578307.1	XM_578307.1		502808	62647543	XM_578307.1	LOC502808	XP_578307.1	ILMN_1369166	0006380133	S	462	GCATCAAACAAGAATGGGGTCCCCTCAAGGTTAACTGGCAGTGTGAGACC					PREDICTED: Rattus norvegicus similar to Ig light chain V region (clone 185-c1) - mouse (fragment) (LOC502808), mRNA.					
Rattus norvegicus	RefSeq	GI_62662634-S	ILMN_49630	LOC497706	XM_579538.1	XM_579538.1		497706	62662634	XM_579538.1	LOC497706	XP_579538.1	ILMN_1368460	0004070039	S	14398	AGCGTCGTCGCCTAGCACCGATTTTCTGATGTAACCAGGGTTTCATACCG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031819 (LOC497706), mRNA.					
Rattus norvegicus	RefSeq	GI_8393572-S	ILMN_302414	HSD11B2	NM_017081.1	NM_017081.1		25117	8393572	NM_017081.1	Hsd11b2	NP_058777.1	ILMN_1371956	0007050180	S	1516	CATGAGACCATGTATACCCTACCAGGCACGACCCTTCAGCTTGGAGAGCC	19	+	35341238-35341287	19q11	Rattus norvegicus hydroxysteroid 11-beta dehydrogenase 2 (Hsd11b2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]	The process by which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume [goid 2017] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IDA]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence IDA]	Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence IDA]; Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence IMP]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]	MGC93528	MGC93528
Rattus norvegicus	RefSeq	GI_62642138	ILMN_299703	CDC37L1	NM_001011941.1	NM_001011941.1		293886	58865451	NM_001011941.1	Cdc37l1	NP_001011941.1	ILMN_1650114	0000430095	S	1306	ACCATGTGTTGCAGGAAGTCGAACTGGACGGACTCTTCCCCCACCCCTCA	1	+	232652245-232652294	1q52	Rattus norvegicus cell division cycle 37 homolog (S. cerevisiae)-like 1 (Cdc37l1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cdc37l	Cdc37l
Rattus norvegicus	RefSeq	GI_13027457-S	ILMN_287173	CAMKV	NM_024000.1	NM_024000.1		79011	13027457	NM_024000.1	Camkv	NP_076490.1	ILMN_1361085	0004780711	S	3344	GCACAGTGGGCCTCCTTGGGCTGGGGAGAAAGTGGGGTTGCACAAGTTTT	8	+	113219852-113219901	8q32	Rattus norvegicus CaM kinase-like vesicle-associated (Camkv), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	1G5	1G5
Rattus norvegicus	RefSeq	GI_62638784-S	ILMN_269199	ZFP54_PREDICTED	XM_001054427.1	XM_001054427.1		308232	109460888	XM_001054427.1	Zfp54_predicted	XP_001054427.1	ILMN_1372630	0005670180	S	1577	CAGTGTGGCAAATCTTTTACTAGGGGCTCAACTCTTAGAGCACATCAGAG				1q12	PREDICTED: Rattus norvegicus zinc finger protein 54 (predicted) (Zfp54_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647684-S	ILMN_266756	RGD1561966_PREDICTED	XM_001072712.1	XM_001072712.1		500229	109473778	XM_001072712.1	RGD1561966_predicted	XP_001072712.1	ILMN_1365005	0003290397	S	5251	CTCATGCCCGGGGGCGGGTTGGGGGTGCAGAAGTCTCTCTATATCTACAT					PREDICTED: Rattus norvegicus similar to MGC22014 protein (predicted) (RGD1561966_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078562-S	ILMN_279319	CD302	NM_001013916.1	NM_001013916.1		295629	62078562	NM_001013916.1	Cd302	NP_001013938.1	ILMN_1349873	0003780537	S	915	CTGGACTGAGAGTTTGGGAACATCAGACGAGCACACTGAACACCTTGACA	3	-	41958282-41958323:41958324-41958331	3q21	Rattus norvegicus CD302 molecule (Cd302), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	MGC108799; RGD1307606	MGC108799; RGD1307606
Rattus norvegicus	RefSeq	GI_62663593-S	ILMN_58340	LOC306962	XM_225372.2	XM_225372.2		306962	62663593	XM_225372.2	LOC306962	XP_225372.2	ILMN_1370086	0004070044	S	375	CGGAAAGCCACCACAAGGCCAAGGGAAATTCCCAAAGGCTCTTTTCAGAG				17q11	PREDICTED: Rattus norvegicus similar to Histone H2A.1 (LOC306962), mRNA.					
Rattus norvegicus	RefSeq	GI_62666562-S	ILMN_295708	RGD1564172_PREDICTED	XM_001057680.1	XM_001057680.1		367721	109511477	XM_001057680.1	RGD1564172_predicted	XP_001057680.1	ILMN_1373752	0006370286	S	551	GAGGGTTTTTGTACCTTCTCCAGTCTTCCACTAACGGGGCTTACCGCCGG				Xq12	PREDICTED: Rattus norvegicus similar to chromosome 2 open reading frame 33 (predicted) (RGD1564172_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646186-S	ILMN_49507	RGD1562809_PREDICTED	XM_230703.4	XM_230703.4		296250	109468983	XM_230703.4	RGD1562809_predicted	XP_230703.4	ILMN_1358494	0002970435	S	1187	GAGTCTACCAGAAGCAACTCAGAATGCAGTGCCAGGGTGTGCCCAGAGTC	3	-	140505489-140505533:140505999-140506003	3q41	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (predicted) (RGD1562809_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538853-S	ILMN_275466	CSRP1	NM_017148.2	NM_017148.2		29276	40538853	NM_017148.2	Csrp1	NP_058844.1	ILMN_1370050	0000450110	S	1550	CTTAATGCTCCTGGGGATGGGGACGGGGACAGAAGGGACAAGGCTGTGTA	13	+	48775685-48775734	13q13	Rattus norvegicus cysteine and glycine-rich protein 1 (Csrp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Csrp	Csrp
Rattus norvegicus	RefSeq	GI_62657729-S	ILMN_64910	SFRS15	XM_213658.4	XM_213658.4		245924	109492910	XM_213658.4	Sfrs15	XP_213658.4	ILMN_1362107	0000060524	S	4589	GGAGAAGCACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCTGTCGAAG	11	+	29807360-29807409	11q11	PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 15 (Sfrs15), mRNA.		Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577768-S	ILMN_269089	OLR1245	NM_001000809.1	NM_001000809.1		405095	47577768	NM_001000809.1	Olr1245	NP_001000809.1	ILMN_1362718	0006020088	S	546	TCCTTTGCTGCAGCTTTCCTGTACCAGCACTTATGCCAACGAAATAGAGA	8	+	40676836-40676885	8q22	Rattus norvegicus olfactory receptor 1245 (Olr1245), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1245	Olr1245
Rattus norvegicus	RefSeq	GI_18426861-S	ILMN_277555	PSMD9	NM_130430.1	NM_130430.1		161475	18426861	NM_130430.1	Psmd9	NP_569114.1	ILMN_1354571	0004560605	S	1231	TTCTCTCGGCTCCCTCAAGTGTAAGGATCTGGAAGAGAGTGGCGGACGCC	12	+	34500618-34500667	12q16	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IPI]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence IDA]	Bridge; Bridge-1	Bridge; Bridge-1
Rattus norvegicus	RefSeq	GI_62647884-S	ILMN_279754	PPP4R2_PREDICTED	XM_001075424.1	XM_001075424.1		297486	109473931	XM_001075424.1	Ppp4r2_predicted	XP_001075424.1	ILMN_1363915	0007100341	S	4481	CTATCGTGATGGGGTTATTGACCTAACGAGGATGCTAGTATGCACTGGCC				4q34	PREDICTED: Rattus norvegicus protein phosphatase 4, regulatory subunit 2 (predicted) (Ppp4r2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666382-S	ILMN_49391	LOC365610	XM_345128.2	XM_345128.2		365610	62666382	XM_345128.2	LOC365610	XP_345129.2	ILMN_1355703	0004670347	S	966	GAAGGACAAGGCCAAGAACAGGCTCTCACTCAGGGATGCAACAGGGGTCC					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC365610), mRNA.					
Rattus norvegicus	RefSeq	GI_62654547-S	ILMN_298308	RGD1566368_PREDICTED	XR_009248.1	XR_009248.1		301083	109485637	XR_009248.1	RGD1566368_predicted		ILMN_1349726	0002190333	S	1847	GGACTTTTGTCACACGCCACCTCAAGAGCAGAGAACAGTTTCCCGAGGCC				8q32	PREDICTED: Rattus norvegicus similar to Solute carrier family 6 (neurotransmitter transporter), member 20 (predicted) (RGD1566368_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012411-S	ILMN_282745	RT1-CE15	NM_001008838.1	NM_001008838.1		414789	57012411	NM_001008838.1	RT1-CE15	NP_001008838.1	ILMN_1367473	0003170020	S	961	GCCATGATTGGAGCTGTGGCCGTGATTGGAGCTGTGGTGGCTGTTGTGAG	20|NW_047606.1	-	56420-56469		Rattus norvegicus RT1 class I, CE15 (RT1-CE15), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_9506718-S	ILMN_280538	GDF15	NM_019216.1	NM_019216.1		29455	9506718	NM_019216.1	Gdf15	NP_062089.1	ILMN_1351674	0005270707	S	651	TGGAGACTGTGCAGGCAACTCTCGAGGACCTAGGTTGGAGCGACTGGGTA	16	+	19313176-19313225	16p14	Rattus norvegicus growth differentiation factor 15 (Gdf15), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]		Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657374	ILMN_60543	RGD1311298_PREDICTED	XM_213532.3	XM_213532.3		287840	109489408	XM_213532.3	RGD1311298_predicted	XP_213532.2	ILMN_1650174	0002940110	S	1843	CCAGGGCCAGAGGGCCACCACTAAGGAGAAACTGCCTTGGATTGAGTTCC	10	+	106547650-106547699	10q32.3	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D030012E24 gene (predicted) (RGD1311298_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29336094-S	ILMN_289915	SEL1H	NM_177933.1	NM_177933.1		314352	29336094	NM_177933.1	Sel1h	NP_808794.1	ILMN_1350394	0003780070	S	3558	CACTGCTCAGCGGCCATGCTGCCACCCTTCTGTTGTAAACGCTAGGAAAC	6	-	115431436-115431485	6q31	Rattus norvegicus Sel1 (suppressor of lin-12) 1 homolog (C. elegans) (Sel1h), mRNA.				Sel1l	Sel1l
Rattus norvegicus	RefSeq	GI_62661469-S	ILMN_262565	RGD1310211_PREDICTED	XM_001057531.1	XM_001057531.1		305887	109502406	XM_001057531.1	RGD1310211_predicted	XP_001057531.1	ILMN_1350637	0005700537	S	869	TAAGTGTCAGCAAGCGAGAGAAAGGACTGCGAAGGCGGGCGAGTGCCATG				15p13	PREDICTED: Rattus norvegicus similar to CG11030-PA (predicted) (RGD1310211_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113812-S	ILMN_273553	V1RD23	NM_001008947.1	NM_001008947.1		494293	57113812	NM_001008947.1	V1rd23	NP_001008947.1	ILMN_1366795	0000540706	S	865	TTGTTGATCGTCAGAGATCCTAAGGATCCTTGTTCTGTGCGATTCAGCTG	1	-	67152722-67152771	1q12	Rattus norvegicus vomeronasal 1 receptor, D23 (V1rd23), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393132-S	ILMN_294150	UNCX	NM_017179.1	NM_017179.1		29375	8393132	NM_017179.1	Uncx	NP_058875.1	ILMN_1361011	0002900538	S	2311	GGAGGGATCAAAAGACCCCGTATCCCCTAACCCACAAAAACCCCACAACG	12	-	15576568-15576617	12q11	Rattus norvegicus UNC homeobox (Uncx), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of the dorsal region of the spinal cord over time, from its formation to the mature structure. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input [goid 21516] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	PHD1; Chx4	PHD1; Chx4
Rattus norvegicus	RefSeq	GI_62639196-S	ILMN_282913	RGD1560854_PREDICTED	XM_001077734.1	XM_001077734.1		499106	109461517	XM_001077734.1	RGD1560854_predicted	XP_001077734.1	ILMN_1369707	0003130465	S	502	CCTCAGTGTGGCCTGGTGGCCTTGTGGATGGCAGGAGCTCTTCTTTCAAC				1q21	PREDICTED: Rattus norvegicus similar to FLJ41131 protein (predicted) (RGD1560854_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649742-S	ILMN_68042	RGD1309198_PREDICTED	XM_232775.4	XM_232775.4		313056	109475570	XM_232775.4	RGD1309198_predicted	XP_232775.4	ILMN_1360448	0002190020	S	702	GGGACCTACGCCAAAACAAGTTAACCTACACCATGAGAGGCCATGCCGAC	5	+	149410743-149410792	5q36	PREDICTED: Rattus norvegicus similar to U5 snRNP-specific protein (Prp8-binding) (predicted) (RGD1309198_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645719-S	ILMN_49681	DDB2_PREDICTED	XM_242065.3	XM_242065.3		311186	62645719	XM_242065.3	Ddb2_predicted	XP_242065.3	ILMN_1368771	0003450333	S	1194	CACCGCCATTTTCAGCACCTCACACCCATCAAGGCGACCTGGCATTCACG					PREDICTED: Rattus norvegicus damage specific DNA binding protein 2 (predicted) (Ddb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638540-S	ILMN_54690	PLG	XM_574314.2	XM_574314.2		85253	109457752	XM_574314.2	Plg	XP_574314.1	ILMN_1354227	0005570593	S	2333	GCCAGGGCGACAGTGGAGGACCTCTGGTTTGCTTCGAGAAGGACAAGTAT	1	-	42782821-42782866:42783042-42783045	1q11	PREDICTED: Rattus norvegicus plasminogen (Plg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence ISS]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence IEA]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an apolipoprotein, the protein component of a lipoprotein complex [goid 34185] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645965-S	ILMN_283757	SEC23B_PREDICTED	XM_001054580.1	XM_001054580.1		362226	109470933	XM_001054580.1	Sec23b_predicted	XP_001054580.1	ILMN_1369410	0001780315	S	2217	CTCAGACACACAATAACCTGTATGCTTGGGGACAGGAAACTGGAGCGCCC				3q41	PREDICTED: Rattus norvegicus SEC23B (S. cerevisiae) (predicted) (Sec23b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642388-S	ILMN_283898	RGD1564197_PREDICTED	XM_001058110.1	XM_001058110.1		499362	109463939	XM_001058110.1	RGD1564197_predicted	XP_001058110.1	ILMN_1360975	0001980181	S	2003	CGCCGCCCCGGAAGCCCTCGCCGTGCAATTCTGTATGGCTTCTGTATAAA				1q54	PREDICTED: Rattus norvegicus similar to Lbx1 (predicted) (RGD1564197_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638552-S	ILMN_291182	CCR6	NM_001013145.1	NM_001013145.1		308163	61557090	NM_001013145.1	Ccr6	NP_001013163.1	ILMN_1650882	0000060689	S	997	CCGAGTCGTGATTGCTGTGGTTCTCGTGTTCCTGGCTTGTCAGATCCCTC	1	-	47115903-47115952	1q11	Rattus norvegicus chemokine (C-C motif) receptor 6 (Ccr6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]	MGC108876	MGC108876
Rattus norvegicus	RefSeq	Rn.37805	ILMN_270625	HSPH1	NM_001011901.1	NM_001011901.1		288444	58865371	NM_001011901.1	Hsph1	NP_001011901.1	ILMN_1530359	0006980619	S	1885	AAGAAAACAAAATCCCAGATGCTGACAAAGCAAATGAAAAGAAAGTTGAT	12	+	5809443-5809492	12p11	Rattus norvegicus heat shock 105kDa/110kDa protein 1 (Hsph1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Hsp105	Hsp105
Rattus norvegicus	RefSeq	GI_62666386-S	ILMN_49553	LOC294497	XM_228268.4	XM_228268.4		294497	109509560	XM_228268.4	LOC294497	XP_228268.4	ILMN_1359368	0005130364	S	524	TCACTCAGGGATGCAACAAGGGCCCCTGGGTCTCTTCCTGGATCAATTGC	20	+	38327304-38327353	20q12	PREDICTED: Rattus norvegicus hypothetical LOC294497 (LOC294497), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981609-S	ILMN_69817	SVS4	NM_012662.2	NM_012662.2		24802	78214329	NM_012662.2	Svs4	NP_036794.1	ILMN_1368856	0005720722	S	287	GCAAGCACATCTCTAGGAGTTCCGGTGGCTCCAACATGGAAGGTGAGAGC	3	+	155212990-155213039	3q42	Rattus norvegicus seminal vesicle secretory protein 4 (Svs4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			Svs4; RNSVSP4U; SVSIV1	Svs4; RNSVSP4U; SVSIV1
Rattus norvegicus	RefSeq	GI_62718718-S	ILMN_276368	RGD1562933_PREDICTED	XR_009104.1	XR_009104.1		501454	109484900	XR_009104.1	RGD1562933_predicted		ILMN_1369340	0002350685	S	847	GAGGGTTTCTGGCTGTCTAGGGAAGGACATTGAGGGGCTCAGGTTGAGGG				8q24	PREDICTED: Rattus norvegicus similar to product is unknown~seizure-related gene (predicted) (RGD1562933_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643695-S	ILMN_60328	RGD1309007_PREDICTED	XM_215595.4	XM_215595.4		295160	109464987	XM_215595.4	RGD1309007_predicted	XP_215595.4	ILMN_1352528	0001990086	S	609	CATTGAGAAAGCTAGAGTTGGCCGGCAAGAGACGGAAGAACGGGCCATGC	2	-	175854636-175854652:175868727-175868759	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610034E18 gene (predicted) (RGD1309007_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666295-S	ILMN_67535	FOXO3_PREDICTED	XM_215421.3	XM_215421.3		294515	62666295	XM_215421.3	Foxo3_predicted	XP_215421.2	ILMN_1374077	0002470019	S	2899	GCAGAAGGAAGGTGTTGTGTCAGTTCCCAGTCTGAGCTTTTGAGCCTGTG				20q13	PREDICTED: Rattus norvegicus forkhead box O3 (predicted) (Foxo3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959269-S	ILMN_300184	KCNJ15	NM_133321.1	NM_133321.1		170847	18959269	NM_133321.1	Kcnj15	NP_579855.1	ILMN_1354840	0006220687	S	1259	AGCTTGAAGAGCAGTACAGGCAGGAGGACCAGAGGGAACGTGAGCTGAGG	11	+	35594064-35594113	11q11	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 15 (Kcnj15), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	 [goid 5242] [evidence IDA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir4.2	Kir4.2
Rattus norvegicus	RefSeq	GI_62639284-S	ILMN_266244	HCST	NM_001005900.1	NM_001005900.1		474146	54312123	NM_001005900.1	Hcst	NP_001005900.1	ILMN_1350570	0006200328	S	120	GCAAGTCAGACAAACGAAGGTTCCTGCTCCGGATGTGGGCCTCTGTCCCT	1	-	85369821-85369852:85370212-85370229	1q21	Rattus norvegicus hematopoietic cell signal transducer (Hcst), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Dap10	Dap10
Rattus norvegicus	RefSeq	GI_62638582-S	ILMN_56733	LOC499031	XM_574321.1	XM_574321.1		499031	62638582	XM_574321.1	LOC499031	XP_574321.1	ILMN_1370376	0004230102	S	211	TACACAGGATGACCAGCAGGCCTGTCACCAGTGCCCTGGTGTTTGTGGGG					PREDICTED: Rattus norvegicus similar to kinesin family member 25 isoform 1 (LOC499031), mRNA.					
Rattus norvegicus	RefSeq	GI_62657319-S	ILMN_263989	CD300LF	NM_001025111.1	NM_001025111.1		287818	68341984	NM_001025111.1	Cd300lf	NP_001020282.1	ILMN_1351992	0004200112	S	898	CTAGGGAGGAGATTTCATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAG	10	-	105193128-105193177	10q32.2	Rattus norvegicus CD300 molecule-like family member f (Cd300lf), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1309733	RGD1309733
Rattus norvegicus	RefSeq	GI_62651773-S	ILMN_262832	THRAP5_PREDICTED	XM_001073722.1	XM_001073722.1		299607	109481520	XM_001073722.1	Thrap5_predicted	XP_001073722.1	ILMN_1355706	0006100035	S	2548	ACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGC				7q11	PREDICTED: Rattus norvegicus thyroid hormone receptor associated protein 5 (predicted), transcript variant 2 (Thrap5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577064-S	ILMN_264275	OLR304	NM_001001039.1	NM_001001039.1		405925	47577064	NM_001001039.1	Olr304	NP_001001039.1	ILMN_1361814	0003840093	S	813	CAAAATTACCTCAGTGCTATACTCAGTCCTCATGCCAACCCTAAACCCCC	1	+	200521645-200521694	1q41	Rattus norvegicus olfactory receptor 304 (Olr304), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr304	Olr304
Rattus norvegicus	RefSeq	GI_47576832-S	ILMN_264596	OLR203	NM_001000191.1	NM_001000191.1		293350	47576832	NM_001000191.1	Olr203	NP_001000191.1	ILMN_1356321	0003120593	S	788	GTTCCTTCCACAGCCCAAAGCAGGACAATATCAGCTCAGTGTTCTACATG	1	+	163777460-163777509	1q33	Rattus norvegicus olfactory receptor 203 (Olr203), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-163872150-163873097_ORF; Olr203	ratchr1-163872150-163873097_ORF; Olr203
Rattus norvegicus	RefSeq	GI_47575950-S	ILMN_275548	OLR1498	NM_001000030.1	NM_001000030.1		287501	47575950	NM_001000030.1	Olr1498	NP_001000030.1	ILMN_1361420	0004050181	S	676	CTTAAGGCCTCATCTACCCAGGCCATCCACAAGGTCTTTTCCACCTGTGG	10	-	61003638-61003687	10q24	Rattus norvegicus olfactory receptor 1498 (Olr1498), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1498	Olr1498
Rattus norvegicus	RefSeq	Rn.47439	ILMN_292951	PPP1R3C	NM_001012072.1	NM_001012072.1		309513	58865715	NM_001012072.1	Ppp1r3c	NP_001012072.1	ILMN_1530421	0000430309	S	2456	AGATATGAATTATTTCGAATGTGAACTGTTTTTGTGTGTGCATAAGTACA	1	-	240992129-240992178	1q53	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 3C (Ppp1r3c), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62642205-A	ILMN_292951	PPP1R3C	NM_001012072.1	NM_001012072.1		309513	58865715	NM_001012072.1	Ppp1r3c	NP_001012072.1	ILMN_1376411	0006510156	S	2526	GGTGCCCTGGGATGAATGCCGTTTACAGTGTGCATGTCCTTTGAGGTGTG	1	-	240992059-240992108	1q53	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 3C (Ppp1r3c), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62658369-S	ILMN_301185	RGD1307034_PREDICTED	XR_008372.1	XR_008372.1		304244	109496494	XR_008372.1	RGD1307034_predicted		ILMN_1358955	0001400139	S	9356	ATGCCCTGGTGGGGTCTAACCATAGCCTGACTGAAATCTGCACCAAGCTC				12p12	PREDICTED: Rattus norvegicus similar to hypothetical protein CG003 (predicted) (RGD1307034_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643553-S	ILMN_274714	SMC4L1	XM_001066172.1	XM_001066172.1		295107	109466778	XM_001066172.1	Smc4l1	XP_001066172.1	ILMN_1362345	0006840239	S	3775	GCTCACTTTGGGAGGGGATGCTGAACTGGAGCTTGTGGATAGTTTAGATC				2q31	PREDICTED: Rattus norvegicus SMC4 structural maintenance of chromosomes 4-like 1 (yeast) (Smc4l1), mRNA.	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]		Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653075-S	ILMN_55770	LOC363003	XM_343333.2	XM_343333.2		363003	62653075	XM_343333.2	LOC363003	XP_343334.2	ILMN_1358535	0002470075	S	2205	TTAGAGGAAAGCGCAGCCACAGACATCAGGGGTCTAACAGGCCAAGTCTG					PREDICTED: Rattus norvegicus similar to cervical cancer receptor (predicted) (LOC363003), mRNA.					
Rattus norvegicus	RefSeq	GI_62643861	ILMN_268114	RGD1562025_PREDICTED	XM_001058732.1	XM_001058732.1		499668	109467162	XM_001058732.1	RGD1562025_predicted	XP_001058732.1	ILMN_1650046	0003060341	S	1783	GTTGAGCCACCAAATGGCACTCTGTCTGACCCCAACGTCACTATGCCGGG				2q34	PREDICTED: Rattus norvegicus similar to leucine rich repeat neuronal 6D (predicted) (RGD1562025_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659810-S	ILMN_70312	LOC501868	XM_577284.1	XM_577284.1		501868	62659810	XM_577284.1	LOC501868	XP_577284.1	ILMN_1373385	0002810373	S	192	ATGGAGACCATGGAGGTAGCCATGCCCATTGCTGTACAGGCTAAGCCCAG					PREDICTED: Rattus norvegicus similar to EWS/FLI1 activated transcript 2 (EAT-2) (LOC501868), mRNA.					
Rattus norvegicus	RefSeq	GI_62655445-S	ILMN_279957	RGD1560359_PREDICTED	XM_578801.1	XM_578801.1		503266	62655445	XM_578801.1	RGD1560359_predicted	XP_578801.1	ILMN_1351238	0002940068	S	289	TACGGCCGCCCAGAGACACTTCGGCAGCTAGGGTTCCAGTACTCCACATA	9	-	83944522-83944571	9q35	PREDICTED: Rattus norvegicus similar to transmembrane protein Bet (predicted) (RGD1560359_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644769-S	ILMN_48095	LHX3	XM_231083.3	XM_231083.3		170671	62644769	XM_231083.3	Lhx3	XP_231083.3	ILMN_1368236	0004560348	S	4042	AGGACCTGTACAATTCTCTGGAGACCCTGGTAGCCCTGTGGAAGCTGGCT				3p13	PREDICTED: Rattus norvegicus LIM homeobox protein 3 (Lhx3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process whereby differentiating motor neurons in the neural tube acquire the specialized structural and/or functional features of medial motor column neurons. Medial motor column neurons are generated at all rostrocaudal levels and send axons to the axial muscles (medial group) and to the body wall muscles (lateral group). Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21526] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62660457-S	ILMN_269572	RGD1311122	NM_001037792.1	NM_001037792.1		364154	83649694	NM_001037792.1	RGD1311122	NP_001032881.1	ILMN_1355336	0003520053	S	859	GTGGCAGTTTATCTGTGGGTGGCAGTTTTCTGTAGTCCTTGACGGTGACG	14	+	45520595-45520644	14p11	Rattus norvegicus similar to RIKEN cDNA 1110003E01 (RGD1311122), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116420	MGC116420
Rattus norvegicus	RefSeq	GI_58865995-A	ILMN_295442	TRIM13	NM_001012210.1	NM_001012210.1		364398	58865995	NM_001012210.1	Trim13	NP_001012210.1	ILMN_1376444	0003170048	S	942	GCCCACAAGCCCTTTAATGAAGAACTTCGATACCAGTCAGTGGGAGGACA	15	+	40751717-40751766	15p12	Rattus norvegicus tripartite motif-containing 13 (Trim13), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646276-S	ILMN_53740	NDRG3_PREDICTED	XM_230786.3	XM_230786.3		311577	62646276	XM_230786.3	Ndrg3_predicted	XP_230786.3	ILMN_1366432	0006200332	S	762	TTCCCACAGATCCAGCAGGCTAGAAGGCGGTCAAGGGCCCATAGCCTTTC					PREDICTED: Rattus norvegicus NDRG family member 3 (predicted) (Ndrg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865875-A	ILMN_270285	TBC1D14	NM_001012152.1	NM_001012152.1		360956	58865875	NM_001012152.1	Tbc1d14	NP_001012152.1	ILMN_1376682	0001990739	S	1175	GCCAGCAGACGACGTGTTCGCAGCTATCTCTACAGTCCAGATGCAAAGCC	14	+	79848587-79848636	14q21	Rattus norvegicus TBC1 domain family, member 14 (Tbc1d14), transcript variant 1, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]; Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]	UR-NR#2; MGC124676; SRF-2	UR-NR#2; MGC124676; SRF-2
Rattus norvegicus	RefSeq	GI_62644882-S	ILMN_53825	LOC502611	XM_578100.1	XM_578100.1		502611	62644882	XM_578100.1	LOC502611	XP_578100.1	ILMN_1369031	0000670040	S	1068	GACTCCAAGCCACAGGTGAGCAGCAACAGAGTCCAAGCAGGTGGGGACCC				3p13	PREDICTED: Rattus norvegicus similar to VNSP I (LOC502611), mRNA.					
Rattus norvegicus	RefSeq	GI_47576676-S	ILMN_277083	OLR1700_PREDICTED	XM_001074247.1	XM_001074247.1		406012	109509697	XM_001074247.1	Olr1700_predicted	XP_001074247.1	ILMN_1359558	0004610731	S	677	CCTCACACCTACTTGTAGTCACACTCTTTTATGGCTCTGCGTCCTTTACC				20p12	PREDICTED: Rattus norvegicus olfactory receptor 1700 (predicted) (Olr1700_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741529-S	ILMN_288620	GPR180	NM_001006994.1	NM_001006994.1		306165	55741529	NM_001006994.1	Gpr180	NP_001006995.1	ILMN_1362935	0000870519	S	1632	CGCCGAAACGATACTTGCCCTGTGTGTCCAGCTAGCCCAGTCAGGAGATC	15	+	102955063-102955112	15q24	Rattus norvegicus G protein-coupled receptor 180 (Gpr180), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645219-A	ILMN_279380	CHN1	NM_032083.1	NM_032083.1		84030	14091776	NM_032083.1	Chn1	NP_114472.1	ILMN_1376930	0004050497	S	2123	CTTCCTCCTCTCAGACATAGTGCTTTGTCTTCAGCAGAAGCGAGACGTGT	3	-	56144147-56144196	3q23	Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Combining with a phorbol ester to initiate a change in cell activity [goid 1565] [evidence TAS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40786516-S	ILMN_262651	WDR12	NM_199410.1	NM_199410.1		363237	40786516	NM_199410.1	Wdr12	NP_955442.1	ILMN_1360454	0001980020	S	844	AACAGAACAATTGGGACTGACAAGAACACCCTTGGTGACCCTCTCTGGCC	9	-	58619598-58619625:58620760-58620781	9q31	Rattus norvegicus WD repeat domain 12 (Wdr12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13540649-S	ILMN_262769	ICA1	NM_030844.1	NM_030844.1		81024	13540649	NM_030844.1	Ica1	NP_110471.1	ILMN_1369539	0006770215	S	1937	GCATGAGTCTGCAACCTTCAACAGGGGAGCCCTCCGGCCACTCCGCAACA	4	-	33680981-33681027:33681028-33681030	4q21	Rattus norvegicus islet cell autoantigen 1 (Ica1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence ISS]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ica69	Ica69
Rattus norvegicus	RefSeq	GI_62661004-S	ILMN_266985	COMTD1_PREDICTED	XM_001065422.1	XM_001065422.1		305685	109502138	XM_001065422.1	Comtd1_predicted	XP_001065422.1	ILMN_1371314	0004540600	S	701	GCCCAAGAACAAGGCTGTTGAATGTGTGCGGAACCTAAACGAGCGCATCC				15p16	PREDICTED: Rattus norvegicus catechol-O-methyltransferase domain containing 1 (predicted) (Comtd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027464-S	ILMN_300524	TAS2R114	NM_023996.1	NM_023996.1		78982	13027464	NM_023996.1	Tas2r114	NP_076486.1	ILMN_1374334	0002760040	S	15	GGAAGGTGTCCTCCTTTCAGTTGCAACTAGTGAGGCTTTGCTTGGCATTG	4	-	169397902-169397951	4q42	Rattus norvegicus taste receptor, type 2, member 114 (Tas2r114), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R5	T2R5
Rattus norvegicus	RefSeq	GI_62078650-S	ILMN_280761	ACTRT1	NM_001013961.1	NM_001013961.1		302796	62078650	NM_001013961.1	Actrt1	NP_001013983.1	ILMN_1357853	0002360538	S	1179	GCAGATGTGGGTCACTGCTGAAGATTTCAAGGAGTACGGGGCATTTGTGG	X	+	132710494-132710543	Xq35	Rattus norvegicus actin-related protein T1 (Actrt1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657906	ILMN_284580	IGSF11	NM_001013120.1	NM_001013120.1		303926	61557017	NM_001013120.1	Igsf11	NP_001013138.1	ILMN_1650776	0006350338	S	3327	ACCATCACTGGCTGCACTTATTTTTCCAAGAGGGACATTTGGGACGTCAC	11	-	63501836-63501885	11q21	Rattus norvegicus immunoglobulin superfamily, member 11 (Igsf11), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94879	MGC94879
Rattus norvegicus	RefSeq	GI_20304122-A	ILMN_294907	MPST	NM_138843.1	NM_138843.1		192172	20304122	NM_138843.1	Mpst	NP_620198.1	ILMN_1376777	0006840309	S	1014	GTGCCTGTCTACGATGGCTCCTGGGTGGAGTGGTACATGCGTGCCCAACC	7	+	116364041-116364090	7q34	Rattus norvegicus mercaptopyruvate sulfurtransferase (Mpst), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]	The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]	Catalysis of the reaction: thiosulfate + cyanide = SO3(2-) (sulfite) + thiocyanate [goid 4792] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3-mercaptopyruvate + cyanide = pyruvate + thiocyanate [goid 16784] [evidence IEA]	Mst	Mst
Rattus norvegicus	RefSeq	GI_62649185-S	ILMN_265363	KLHL9_PREDICTED	XM_001054585.1	XM_001054585.1		313348	109476727	XM_001054585.1	Klhl9_predicted	XP_001054585.1	ILMN_1357766	0005670091	S	3308	GGTGCTGCTGTAGCTGGTAAGCATCCAGTAATGTGTGAGCTGCCTCAAGG				5q32	PREDICTED: Rattus norvegicus kelch-like 9 (Drosophila) (predicted) (Klhl9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642804	ILMN_61951	RGD1310992	XM_226713.4	XM_226713.4		310019	109464301	XM_226713.4	RGD1310992	XP_226713.3	ILMN_1650068	0001990377	S	1391	CATAAAGGAACTGAATCGGAGAGGCGTCCTTGCCAACGCTCTTGCAGGTC	2	-	28841138-28841187	2q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12787 (RGD1310992), mRNA.					
Rattus norvegicus	RefSeq	GI_62651222-S	ILMN_271264	RGD1309550	XM_001069129.1	XM_001069129.1		299295	109479947	XM_001069129.1	RGD1309550	XP_001069129.1	ILMN_1367758	0002360091	S	1051	AAAGTGACAGGCTCTACGCTATGAAGGCTGAGGTCTTGGCTCGGGCTGGC				6q32	PREDICTED: Rattus norvegicus similar to hypothetical protein D12Ertd771e (RGD1309550), mRNA.					
Rattus norvegicus	RefSeq	GI_50657363-S	ILMN_264917	NOTCH4	NM_001002827.1	NM_001002827.1		406162	50657363	NM_001002827.1	Notch4	NP_001002827.1	ILMN_1373256	0003120465	S	6137	CTTCCCCATAGAGTATGAACAGCAATGGCAAGAGGGTTTAGGATGCCCGG	20	-	4263501-4263550	20p12	Rattus norvegicus Notch homolog 4 (Drosophila) (Notch4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence IEA]; The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence ISS]; The change in form (cell shape and size) that occurs during the differentiation of an endothelial cell [goid 1886] [evidence IDA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 45446] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell differentiation [goid 45602] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell differentiation [goid 45602] [evidence ISS]; Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 50793] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644500-S	ILMN_56476	EDG7_PREDICTED	XM_346646.2	XM_346646.2		360355	62644500	XM_346646.2	Edg7_predicted	XP_346647.1	ILMN_1356030	0006100722	S	1935	CCTCCGTCTTGGTGGTCTGGATACCACTGATGGGTTTGCTGGATTCCATG					PREDICTED: Rattus norvegicus endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 7 (predicted) (Edg7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575852-S	ILMN_295085	ADRA1B	NM_016991.2	NM_016991.2		24173	47575852	NM_016991.2	Adra1b	NP_058687.2	ILMN_1352223	0000610411	S	2259	ACGTGCGTGTGTCTGTTCGGTGTACGTGTGGGCTGCATGGGTGTGAGTGT	10	-	28889300-28889349	10q21	Rattus norvegicus adrenergic, alpha-1B-, receptor (Adra1b), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A process that is triggered by vasomotor excitation and results in a decrease in the diameter of an artery during the baroreceptor response to decreased blood pressure [goid 1987] [evidence ISS]; The process by which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction [goid 1996] [evidence ISS]; Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings [goid 1997] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IMP]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen [goid 45818] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen [goid 45819] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4937] [evidence IDA];  [goid 4937] [evidence IEA];  [goid 4937] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4937] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34856189-S	ILMN_275649	KCNA7_PREDICTED	XM_001080729.1	XM_001080729.1		365241	109461925	XM_001080729.1	Kcna7_predicted	XP_001080729.1	ILMN_1372906	0001340100	S	1492	GGGACATGGCACCTGTCACCGTGGGTGGCAAGATCGTGGGCTCTCTGTGT				1q22	PREDICTED: Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 7 (predicted) (Kcna7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27692777-S	ILMN_50428	LOC310613	XM_227387.1	XM_227387.1		310613	27692777	XM_227387.1	LOC310613	XP_227387.1	ILMN_1363600	0000070484	S	44	TCAGGCAGTCACTACTCCCTCTTACACCAAAGGTGGCTTTGAAGTGCTCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310008M10 (LOC310613), mRNA.					
Rattus norvegicus	RefSeq	GI_62644153-S	ILMN_61866	DENND2D_PREDICTED	XM_227570.4	XM_227570.4		310772	109465416	XM_227570.4	Dennd2d_predicted	XP_227570.3	ILMN_1362803	0005690017	S	1704	GAGGCTCTCGGCCCTGGAATCAATCTGTGGCTTTCTTCCAACTGATAACC	2	+	201799618-201799667	2q34	PREDICTED: Rattus norvegicus DENN/MADD domain containing 2D (predicted) (Dennd2d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454307-S	ILMN_267393	SGSM3	NM_198787.1	NM_198787.1		362963	38454307	NM_198787.1	Sgsm3	NP_942082.1	ILMN_1372262	0003940148	S	2724	ATGCTGCTCAGGAAGTGCGTAGGCTAACAGCAGACAAAGGCCCCTCGACC	7	+	119305945-119305994	7q34	Rattus norvegicus small G protein signaling modulator 3 (Sgsm3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rap family of proteins switching to a GTP-bound active state [goid 32486] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 45732] [evidence ISS]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]	bdif-1	bdif-1
Rattus norvegicus	RefSeq	GI_62643332-S	ILMN_65670	RGD1565646_PREDICTED	XM_574919.2	XM_574919.2		499593	109464742	XM_574919.2	RGD1565646_predicted	XP_574919.1	ILMN_1373901	0000870609	S	1070	AGACCTACATGAACGGCTCGCCCACCTACAGCATGTCCTACTCGCAGCAG	2	+	120970030-120970079	2q25	PREDICTED: Rattus norvegicus similar to SOX2 protein (predicted) (RGD1565646_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978844-S	ILMN_58154	FOXG1	NM_012560.2	NM_012560.2		24370	81295398	NM_012560.2	Foxg1	NP_036692.1	ILMN_1369662	0004480707	S	2641	CCTTGCAAATATGTAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTG	6	+	69220312-69220361	6q22	Rattus norvegicus forkhead box G1 (Foxg1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the rate or extent of progress through the mitotic cell cycle [goid 7346] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The recognition of molecules at the central nervous system midline choice point by an axon growth cone; this choice point determines whether the growth cone will cross the midline [goid 16199] [evidence ISS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; The process by which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron [goid 48667] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	RATBF1A; Fkhr; Fkhl1; BF1A; Foxo1	RATBF1A; Fkhr; Fkhl1; BF1A; Foxo1
Rattus norvegicus	RefSeq	GI_62661648	ILMN_53952	LOC361059	XM_341340.2	XM_341340.2		361059	62661648	XM_341340.2	LOC361059	XP_341341.2	ILMN_1650957	0001690164	S	1339	GCTGGGCCCTCCTGACGATGGTTTACTGACTAGAAGGAAGGCTCCGGGTT				15p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610528H13 (predicted) (LOC361059), mRNA.					
Rattus norvegicus	RefSeq	GI_62638412-S	ILMN_48353	RGD1311933_PREDICTED	XM_217725.3	XM_217725.3		308056	109457683	XM_217725.3	RGD1311933_predicted	XP_217725.3	ILMN_1351616	0006100132	S	623	GGGATGCCCATACCTCATCCTTGGAGTATCCCACTCGTGCCTTTGTAGAC	1	+	29606604-29606653	1p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310057J18 (predicted) (RGD1311933_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575956-S	ILMN_281524	OLR1500	NM_001000942.1	NM_001000942.1		405281	47575956	NM_001000942.1	Olr1500	NP_001000942.1	ILMN_1359048	0002350390	S	441	TCTGTGGATGCTGACGACGACCCATGCCCTGCTGCATACCCTACTCATTG	10	-	61118883-61118932	10q24	Rattus norvegicus olfactory receptor 1500 (Olr1500), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34852623-S	ILMN_265445	ATOH7_PREDICTED	XM_001080515.1	XM_001080515.1		365564	109510037	XM_001080515.1	Atoh7_predicted	XP_001080515.1	ILMN_1372634	0006420068	S	626	CTCAGCTACATCGTGGCGCTCACCCGCATCCTAGCCGAAGCCGAGCGGGA				20p11	PREDICTED: Rattus norvegicus atonal homolog 7 (Drosophila) (predicted) (Atoh7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651913-S	ILMN_65857	LOC503111	XM_578631.1	XM_578631.1		503111	62651913	XM_578631.1	LOC503111	XP_578631.1	ILMN_1372116	0002690100	S	703	CTGGTGTGATGCTGAGGCGTCTGTGCGCTGAAGGGACTTGTCCCCTGGAT				7q11	PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503111), mRNA.					
Rattus norvegicus	RefSeq	GI_8393860-S	ILMN_287235	HPCAL4	NM_017357.1	NM_017357.1		50872	8393860	NM_017357.1	Hpcal4	NP_059053.1	ILMN_1373628	0001850019	S	577	GAGGAGTTCAAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTGTT	5	+	142498273-142498322	5q36	Rattus norvegicus hippocalcin-like 4 (Hpcal4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]		 [goid 5246] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	NVP-2; Nvjp2	NVP-2; Nvjp2
Rattus norvegicus	RefSeq	GI_62643951-S	ILMN_276148	LOC685088	XM_001062249.1	XM_001062249.1		685088	109465091	XM_001062249.1	LOC685088	XP_001062249.1	ILMN_1355433	0003290358	S	1478	GCCGAGGCTGAGAGCAGACTACAGCCCTGCAAAGAAGCTGGCTACCTGGT	2	+	182061242-182061291	2q34	PREDICTED: Rattus norvegicus similar to Src homology 2 domain containing E (LOC685088), mRNA.					
Rattus norvegicus	RefSeq	GI_62652460-S	ILMN_70293	RGD1564703_PREDICTED	XM_235335.4	XM_235335.4		314997	109480801	XM_235335.4	RGD1564703_predicted	XP_235335.4	ILMN_1348868	0002970463	S	5406	CCACCTGGTCACAGCAGAAGAAGCTGAGAAAAACCCTGTTGGGAAAGCCC	7	+	95417037-95417086	7q33	PREDICTED: Rattus norvegicus similar to mKIAA0493 protein (predicted) (RGD1564703_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408331-S	ILMN_276361	PCDH8	NM_022868.1	NM_022868.1		64865	12408331	NM_022868.1	Pcdh8	NP_074059.1	ILMN_1365965	0002630673	S	2722	CAGCTCCCCAAGACAGTGGGGCTGCAGAGCGTCTATGAGAAAGTGCTGCA	15	-	61057111-61057160	15q12	Rattus norvegicus protocadherin 8 (Pcdh8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence TAS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667427-S	ILMN_62007	LOC503479	XM_579036.1	XM_579036.1		503479	62667427	XM_579036.1	LOC503479	XP_579036.1	ILMN_1355935	0006840358	S	1121	GGCAGCCGCGCATTACAAGTGCATGTTGTTTTCTTCTGGCACTGTGCAGC					PREDICTED: Rattus norvegicus similar to PHD finger protein 6 (LOC503479), mRNA.					
Rattus norvegicus	RefSeq	GI_16758247-S	ILMN_57086	CDW92	NM_053492.2	NM_053492.2		85254	76563922	NM_053492.2	Cdw92	NP_445944.2	ILMN_1359953	0002640056	S	2663	GTATGTGCATGGGAAGTGTCTTGGGGGGAGGGTTGTAGAAGCACAGAGGA	5	+	71055944-71055993	5q24	Rattus norvegicus CDW92 antigen (Cdw92), transcript variant 2, mRNA.				Ctl1	Ctl1
Rattus norvegicus	RefSeq	GI_62639900-S	ILMN_277117	RGD1562499_PREDICTED	XM_001080769.1	XM_001080769.1		308586	109461943	XM_001080769.1	RGD1562499_predicted	XP_001080769.1	ILMN_1352923	0000380131	S	1082	CTGATCTGGAACAGCCAAACAGAGGAGCCCCTGGCCATGCCTCAGCAAGA				1q22	PREDICTED: Rattus norvegicus similar to GDP-L-fucose:beta-D-galactoside 2-alpha-1-fucosyltransferase (predicted) (RGD1562499_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656322-S	ILMN_272435	LOC497938	NM_001017475.1	NM_001017475.1		497938	62945305	NM_001017475.1	LOC497938	NP_001017475.1	ILMN_1360670	0006840059	S	1320	GCGCTTGGCAGAAGGCCAGATTTCAGATCCAACCCCACCTGCAACCACCT	10	-	56638855-56638904	10q24	Rattus norvegicus similar to RIKEN cDNA 4933402P03 (LOC497938), mRNA.					
Rattus norvegicus	RefSeq	GI_62945305	ILMN_272435	LOC497938	NM_001017475.1	NM_001017475.1		497938	62945305	NM_001017475.1	LOC497938	NP_001017475.1	ILMN_1530468	0002510722	S	125	TCATCATTCTTGTCAACATCAGCATCAATGTGACAACTGTGATATGGCAT	10	-	56640143-56640170:56640326-56640347	10q24	Rattus norvegicus similar to RIKEN cDNA 4933402P03 (LOC497938), mRNA.					
Rattus norvegicus	RefSeq	GI_55741680-S	ILMN_270364	ITM2B	NM_001006963.1	NM_001006963.1		290364	55741680	NM_001006963.1	Itm2b	NP_001006964.1	ILMN_1373266	0001660341	S	1364	GCCGATAGCCCTGCTGCCTAGCCTGTTAGCATTTGCGGTCACCTTCTCAT	15	-	54005477-54005526	15p11	Rattus norvegicus integral membrane protein 2B (Itm2b), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94644	MGC94644
Rattus norvegicus	RefSeq	GI_62642522-S	ILMN_276832	ZDHHC6	NM_001037652.1	NM_001037652.1		361771	83320089	NM_001037652.1	Zdhhc6	NP_001032741.1	ILMN_1364885	0007050070	S	1235	GGAGTCCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTCA				1q55	Rattus norvegicus zinc finger, DHHC domain containing 6 (Zdhhc6), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC125041	MGC125041
Rattus norvegicus	RefSeq	GI_31342052-S	ILMN_287242	TP53INP1	NM_181084.2	NM_181084.2		297822	31342052	NM_181084.2	Tp53inp1	NP_851598.1	ILMN_1357575	0000510068	S	731	CAGAAATGGCCTCCGTCGCCAGAACCTTACCAGGGATTGCCACACTCGAC	5	+	25014011-25014060	5q13	Rattus norvegicus tumor protein p53 inducible nuclear protein 1 (Tp53inp1), mRNA.				Stinp	Stinp
Rattus norvegicus	RefSeq	GI_62643739-S	ILMN_62394	IQGAP3_PREDICTED	XM_227396.4	XM_227396.4		310621	109465022	XM_227396.4	Iqgap3_predicted	XP_227396.3	ILMN_1361765	0001570286	S	5342	CCCCAGCAACCTCTTACCCCTCATCACATCCCAGTATCTGACTTGGGTGC	2	+	180198331-180198380	2q34	PREDICTED: Rattus norvegicus IQ motif containing GTPase activating protein 3 (predicted) (Iqgap3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577390-S	ILMN_292017	OLR701	NM_001000627.1	NM_001000627.1		404819	47577390	NM_001000627.1	Olr701	NP_001000627.1	ILMN_1353605	0001340369	S	428	TGTTGTTGGCCTGGTTTGGGGGTTTCTTGCACGCTGTAGTCAAACTCCTA	3	-	73812308-73812357	3q24	Rattus norvegicus olfactory receptor 701 (Olr701), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr701	Olr701
Rattus norvegicus	RefSeq	GI_47575948-S	ILMN_272654	OLR1496	NM_001000716.1	NM_001000716.1		404968	47575948	NM_001000716.1	Olr1496	NP_001000716.1	ILMN_1368031	0005290088	S	234	GCTGCTGCAGAACATGAAGAGCCAGGACACATCCATTCCCTATGGAGGCT	10	-	60965706-60965755	10q24	Rattus norvegicus olfactory receptor 1496 (Olr1496), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605811-S	ILMN_281197	SIRT2	NM_001008368.1	NM_001008368.1		361532	56605811	NM_001008368.1	Sirt2	NP_001008369.1	ILMN_1352401	0000630341	S	1853	ACCCTGCATAGGGGCTGGACCCTCCAAATATAACTTCACGCAGGGGCTGG	1	+	83895930-83895979	1q21	Rattus norvegicus sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae) (Sirt2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing [goid 5677] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]	Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin [goid 6342] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6476] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the removal of one or more acetyl groups from a histone, requiring NAD [goid 17136] [evidence IEA]; Catalysis of the removal of one or more acetyl groups from a histone, requiring NAD [goid 17136] [evidence ISS]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence ISS]; Interacting selectively with the enzyme histone deacetylase [goid 42826] [evidence ISS]; Catalysis of the reaction: N-acetyl(alpha-tubulin) + H2O = alpha-tubulin + acetate [goid 42903] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MGC105900	MGC105900
Rattus norvegicus	RefSeq	GI_62666531-S	ILMN_58256	DDX3X	XM_228701.4	XM_228701.4		317335	109510437	XM_228701.4	Ddx3x	XP_228701.4	ILMN_2038837	0006980754	S	2216	AGGGAGCTCAAGGTCACAAGTAAAGATGAAAGGAACAATCAGCAGCCCTG	X	-	21497438-21497487	Xq12	PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked (Ddx3x), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_56090234-S	ILMN_274939	UBAC1	NM_001007742.1	NM_001007742.1		362087	56090234	NM_001007742.1	Ubac1	NP_001007743.1	ILMN_1365570	0005080400	S	1477	GCCTGGATCACAGCTTCAGTGACTCTCCTTTCCTGACCTAACGGCTTGTC	3	-	4179241-4179290	3p13	Rattus norvegicus UBA domain containing 1 (Ubac1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94349	MGC94349
Rattus norvegicus	RefSeq	GI_62648686-S	ILMN_58931	SLC26A7_PREDICTED	XM_232793.4	XM_232793.4		297910	109474714	XM_232793.4	Slc26a7_predicted	XP_232793.3	ILMN_1353252	0007100133	S	2040	GAGCAAGGACACTGACCACAGTGAAGTCTGAGGTCCACGCATTGAAATGC	5	-	28899900-28899919:28899920-28899949	5q13	PREDICTED: Rattus norvegicus solute carrier family 26, member 7 (predicted) (Slc26a7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758217-S	ILMN_298048	HAMP	NM_053469.1	NM_053469.1		84604	16758217	NM_053469.1	Hamp	NP_445921.1	ILMN_1354289	0004850500	S	166	GACAGTGCGCTGCTGATGCTGAAGCGAAGGAAGCGAGACACCAACTTCCC	1	-	85978264-85978312:85978396-85978396	1q21	Rattus norvegicus hepcidin antimicrobial peptide (Hamp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The region that lies just beneath the plasma membrane on the apical edge of a cell [goid 45179] [evidence IDA]	The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IDA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Hepc	Hepc
Rattus norvegicus	RefSeq	GI_11559993-S	ILMN_268148	PIK3R3	NM_022213.1	NM_022213.1		60664	11559993	NM_022213.1	Pik3r3	NP_071549.1	ILMN_1358018	0001980095	S	1087	GTGAACCGAGTACAGGCAGAGGACCTGCTTTATGGGAAGCCAGACGGTGC	5	+	136559272-136559321	5q36	Rattus norvegicus phosphoinositide-3-kinase, regulatory subunit 3 (gamma) (Pik3r3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]	The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity [goid 46935] [evidence IDA]; Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity [goid 46935] [evidence ISS]; Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity [goid 46935] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664785-S	ILMN_295747	CDH11	XM_001059464.1	XM_001059464.1		84407	109507685	XM_001059464.1	Cdh11	XP_001059464.1	ILMN_1370705	0000580707	S	3926	AGACTTGATGGCCCGCCTTGAGCATTGTGGCGTTGAAGGGGTTCATAGTC	19	+	2381697-2381746	19p14	PREDICTED: Rattus norvegicus cadherin 11 (Cdh11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641198-S	ILMN_51422	LOC499255	XM_574549.1	XM_574549.1		499255	62641198	XM_574549.1	LOC499255	XP_574549.1	ILMN_1352678	0003450600	S	2213	ATGTCTTGGCCTGATCTCTCACGAACAGAAACACTGGCTGGGGCTGGGGG				1q35	PREDICTED: Rattus norvegicus similar to TSG118.1 (LOC499255), mRNA.					
Rattus norvegicus	RefSeq	GI_27465606-S	ILMN_272232	DLGAP3	NM_173138.1	NM_173138.1		286923	27465606	NM_173138.1	Dlgap3	NP_775161.1	ILMN_1369126	0003190687	S	2807	CCTGGAGCCTAAGGAGGAGAAGAAGGTCCCTCCGCCGATACCAAAGAAGC	5	+	146683966-146683978:146684593-146684629	5q36	Rattus norvegicus discs, large (Drosophila) homolog-associated protein 3 (Dlgap3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	SAPAP3; Dap3; DAP-3	SAPAP3; Dap3; DAP-3
Rattus norvegicus	RefSeq	GI_62659877-S	ILMN_53154	LOC289332	XM_237909.2	XM_237909.2		289332	62659877	XM_237909.2	LOC289332	XP_237909.1	ILMN_1354045	0006400121	S	489	GCTACAGAATCTACAAAGGAGGTGCCAGTGAAAGCTGTGAACAAGCCGGG					PREDICTED: Rattus norvegicus hypothetical LOC289332 (LOC289332), mRNA.					
Rattus norvegicus	RefSeq	GI_47577502-S	ILMN_288930	OLR48	NM_001000122.1	NM_001000122.1		293188	47577502	NM_001000122.1	Olr48	NP_001000122.1	ILMN_1373338	0003870278	S	789	TATTCACCGGTTTGGCCACCAGGTGCCTCCTCCAATCCACACTTTGCTGG	1	+	160276282-160276331	1q32	Rattus norvegicus olfactory receptor 48 (Olr48), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr48	Olr48
Rattus norvegicus	RefSeq	GI_62666522-S	ILMN_57797	LOC501517	XM_576918.1	XM_576918.1		501517	62666522	XM_576918.1	LOC501517	XP_576918.1	ILMN_1371945	0006510048	S	499	GGTGACAGCAAATGTTGGCGAGGATGTGGAAAAAGAGGAACACTCCTCCT					PREDICTED: Rattus norvegicus similar to LRRGT00078 (LOC501517), mRNA.					
Rattus norvegicus	RefSeq	GI_62658241-S	ILMN_57782	LOC498117	XM_573329.1	XM_573329.1		498117	62658241	XM_573329.1	LOC498117	XP_573329.1	ILMN_1373036	0001660711	S	148	GCTTTTCGGTGTTTTTATCGGAGAGTCCGGCAGAGCCCTAGCTCCTCCAG					PREDICTED: Rattus norvegicus similar to mdgl-1 (LOC498117), mRNA.					
Rattus norvegicus	RefSeq	GI_27716762-S	ILMN_58756	LOC298850	XM_216657.1	XM_216657.1		298850	27716762	XM_216657.1	LOC298850	XP_216657.1	ILMN_1365185	0007040100	S	363	GGGGCAGGGATGAGTGAAAGCAGAGAGGAAGACATCCCAGAATTCCACAG				6q14	PREDICTED: Rattus norvegicus similar to centromere protein A (LOC298850), mRNA.					
Rattus norvegicus	RefSeq	GI_62661702-S	ILMN_56691	BMP1	XM_573814.2	XM_573814.2		83470	109501726	XM_573814.2	Bmp1	XP_573814.1	ILMN_1354950	0003140465	S	4083	GAGCTGTGGTGGGGAGTTGGAGAAGAGGGAGTGGATAAGTAAGACAGGGC	15	-	50878209-50878258	15p11	PREDICTED: Rattus norvegicus bone morphogenetic protein 1, transcript variant 2 (Bmp1), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576566-S	ILMN_298295	OLR1646	NM_001000103.1	NM_001000103.1		290202	47576566	NM_001000103.1	Olr1646	NP_001000103.1	ILMN_1370188	0006100152	S	777	CCGGTCTGGCAAGAATGGACAGGGGGAGGATCATAACAAGGTGGTGGCAC	15	-	32344251-32344300	15p13	Rattus norvegicus olfactory receptor 1646 (Olr1646), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1646	Olr1646
Rattus norvegicus	RefSeq	GI_62650187-S	ILMN_68375	LOC500599	XM_575973.1	XM_575973.1		500599	62650187	XM_575973.1	LOC500599	XP_575973.1	ILMN_1351788	0004150706	S	0	GGCCCAGGTCTGACGGAGGTGGCTGCTGCAACTACACGTTAAAGGCTCCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430015G10 (LOC500599), mRNA.					
Rattus norvegicus	RefSeq	GI_62664009-S	ILMN_51192	LOC497717	XM_579724.1	XM_579724.1		497717	62664009	XM_579724.1	LOC497717	XP_579724.1	ILMN_1359990	0001170056	S	7964	GCGCAGCAAGAGAAACGACCATCAGTTCACACTACGTCCAGAGGATAAGA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_183331 (LOC497717), mRNA.					
Rattus norvegicus	RefSeq	GI_62665435-I	ILMN_48662	ABCB10_PREDICTED	XM_574253.1	XM_574253.1		361439	62665435	XM_574253.1	Abcb10_predicted	XP_574253.1	ILMN_1375315	0000050746	S	780	ACTCTCCCTGCAGTCACCGGCAGTCAGTCCTGCCACAAACCAGCAAGGCT				19q12	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 10 (predicted) (Abcb10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665141-S	ILMN_292401	TRADD	XM_001071920.1	XM_001071920.1		246756	109508658	XM_001071920.1	Tradd	XP_001071920.1	ILMN_1372817	0004760300	S	1411	AAGGGGCAGGGTTTTGGGTACAGTAGGCTCTGTTGGGGCCTTGAGGAAGA				19q11	PREDICTED: Rattus norvegicus TNFRSF1A-associated via death domain (Tradd), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space [goid 19215] [evidence ISS]; Interacting selectively with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space [goid 19215] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649899	ILMN_294056	RGD1562511_PREDICTED	XR_008709.1	XR_008709.1		500571	109477551	XR_008709.1	RGD1562511_predicted		ILMN_1649733	0005900168	S	2706	GGCCAGCCAGATCCTCAGCACGGACCCCATGAAGAGCCTCACTTATCACA				5q36	PREDICTED: Rattus norvegicus similar to MmKIF17 (predicted) (RGD1562511_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661280-A	ILMN_287775	ANG1	NM_001006992.1	NM_001006992.1		305843	55742835	NM_001006992.1	Ang1	NP_001006993.1	ILMN_1376323	0004570092	S	212	ATGGCAACAAGGGCAGCATCAAGGCCATCTGTGGCGCGAATGGAAGCCCT	15	+	27083300-27083349	15p14	Rattus norvegicus angiogenin, ribonuclease A family, member 1 (Ang1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A stable heterodimer of angiogenin and placental ribonuclease inhibitor; interaction between angiogenin and PRI prevents angiogenin binding to its receptor to stimulate angiogenesis [goid 32311] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The chemical reactions and pathways resulting in the formation of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues [goid 6651] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template [goid 9303] [evidence ISS]; Assembly of actin filaments by the addition of actin monomers to a filament [goid 30041] [evidence ISS]; Any process that initiates the activity of the inactive enzyme phospholipase A2 [goid 32431] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA [goid 4540] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51036668-S	ILMN_280447	ACOT8	NM_130756.2	NM_130756.2		170588	51036668	NM_130756.2	Acot8	NP_570112.2	ILMN_1370864	0000670673	S	1246	TGGTACATGGGCGGCTGTGGCGTCGGGATGGGGTCCTTGCTGTGACCTGT	3	-	155828386-155828435	3q42	Rattus norvegicus acyl-CoA thioesterase 8 (Acot8), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]	Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence IEA]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: choloyl-CoA + H2O = cholate + CoA [goid 33882] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence IEA]	Pte1	Pte1
Rattus norvegicus	RefSeq	GI_8393537-A	ILMN_264703	HMGCS1	NM_017268.1	NM_017268.1		29637	8393537	NM_017268.1	Hmgcs1	NP_058964.1	ILMN_1376480	0000630017	S	3186	TGGGCAAGCCTCGCAATGTTGGCACGGAGCGTTAACCACACCTTACTAAT	2	+	51754499-51754548	2q16	Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (Hmgcs1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence TAS]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647767-S	ILMN_269033	LOC500251	NM_001025047.1	NM_001025047.1		500251	68163526	NM_001025047.1	LOC500251	NP_001020218.1	ILMN_1368239	0001190717	S	1224	CTACTGTGAGACAGCCTAAGAGGGCTAGCTACCATGGCTCCCTATGGGCC				4q34	Rattus norvegicus hypothetical protein LOC500251 (LOC500251), mRNA.					
Rattus norvegicus	RefSeq	GI_46485381-S	ILMN_279763	BHLHB9	NM_207611.1	NM_207611.1		317407	46485381	NM_207611.1	Bhlhb9	NP_997494.1	ILMN_1355528	0005420528	S	2602	TGTCCCCTACCAGGTTAACAGCTATTGGCTTCCTTCACATTCAGGTTGAC	X	+	123151748-123151797	Xq35	Rattus norvegicus basic helix-loop-helix domain containing, class B, 9 (Bhlhb9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	p60TRP	p60TRP
Rattus norvegicus	RefSeq	GI_11560035-S	ILMN_275640	NMU	NM_022239.1	NM_022239.1		63887	11560035	NM_022239.1	Nmu	NP_071575.1	ILMN_1366174	0006450162	S	558	ACCAGGGTCCTGTAGCTCCAAGTGGGGGATTCTTTTTATTTAGGCCACGC	14	+	34140113-34140156:34141689-34141694	14p11	Rattus norvegicus neuromedin U (Nmu), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]	The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion [goid 1696] [evidence IMP]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical daylength'. The critical daylength varies between species [goid 9648] [evidence IEP]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IMP]	Interacting selectively with one or more specific sites on a neuromedin U receptor [goid 42922] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647798-S	ILMN_60979	LOC502849	XM_578349.1	XM_578349.1		502849	62647798	XM_578349.1	LOC502849	XP_578349.1	ILMN_1359919	0006510593	S	410	GCCCTTCAGTCAGCATAAGAAACTGCTGCACAAGCCCAGGCATCAGAAGG					PREDICTED: Rattus norvegicus similar to ribosomal protein L6 (LOC502849), mRNA.					
Rattus norvegicus	RefSeq	GI_61557148-S	ILMN_298269	CCBL1	NM_001013164.2	NM_001013164.2		311844	71896546	NM_001013164.2	Ccbl1	NP_001013182.2	ILMN_1357645	0001400538	S	1475	CCAGGCCATGGATGAGAGACTGCGCAAGTGGAAAGAGCTCCAACCCTGAG	3	-	9195779-9195779:9195780-9195828	3p12	Rattus norvegicus cysteine conjugate-beta lyase 1 (Ccbl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-glutamate [goid 16212] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine = 1-aminocyclopropane-1-carboxylate + methylthioadenosine [goid 16847] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the reaction: phenylpyruvate + L-glutamine = L-phenylalanine + 2-keto-glutaramate [goid 47316] [evidence IEA]; Catalysis of the reaction: RS-CH2-CH(NH3+)COO- = RSH + NH3 + pyruvate [goid 47804] [evidence IEA]	KatI; Gtk	KatI; Gtk
Rattus norvegicus	RefSeq	GI_62644690-S	ILMN_280071	IL1F8_PREDICTED	XM_001077066.1	XM_001077066.1		362076	109469509	XM_001077066.1	Il1f8_predicted	XP_001077066.1	ILMN_1374886	0005900364	S	279	CTGCCTCTTCTGTGCTGAGATCGAGGGCAAACCGACTTTGCAGCTTAAGG				3p13	PREDICTED: Rattus norvegicus interleukin 1 family, member 8 (predicted) (Il1f8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959259-S	ILMN_279194	SLC40A1	NM_133315.1	NM_133315.1		170840	18959259	NM_133315.1	Slc40a1	NP_579849.1	ILMN_1351485	0002690161	S	2029	AGCTGTGGCCCCTGTTACTAGATTTGTGGAGAGCATGTGTGCTTATTTTG	9	-	44978603-44978652	9q22	Rattus norvegicus solute carrier family 39 (iron-regulated transporter), member 1 (Slc40a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence NAS]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]	Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other [goid 5381] [evidence NAS]; Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other [goid 5381] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]	Fpn1; Slc11a3; Slc39a1	Fpn1; Slc11a3; Slc39a1
Rattus norvegicus	RefSeq	GI_62656750-S	ILMN_263672	EPX_PREDICTED	XM_001081178.1	XM_001081178.1		303414	109491605	XM_001081178.1	Epx_predicted	XP_001081178.1	ILMN_1362714	0000540672	S	1937	CAAGACGCCCGACAACATTGACATCTGGGTGGGAGCCATAGCAGAGCCTC				10q26	PREDICTED: Rattus norvegicus eosinophil peroxidase (predicted) (Epx_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758317-S	ILMN_281838	PDK4	NM_053551.1	NM_053551.1		89813	16758317	NM_053551.1	Pdk4	NP_446003.1	ILMN_1364094	0006520026	S	1368	CGGGATCAAAGTGGGTCTACGGCAGTGCTGCTTCGTGAATGTGTGTGGAC	4	-	30235303-30235352	4q13	Rattus norvegicus pyruvate dehydrogenase kinase, isozyme 4 (Pdk4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate [goid 6086] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide [goid 16310] [evidence IEA]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IMP]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657471-S	ILMN_284792	RGD1306500_PREDICTED	XM_001081783.1	XM_001081783.1		360674	109492375	XM_001081783.1	RGD1306500_predicted	XP_001081783.1	ILMN_1348957	0000540035	S	7344	CGGCCCCGGTGTTAGCAAATCCAAGTTCAAGCGTAAGGAGGCCCTGAGCT					PREDICTED: Rattus norvegicus similar to KIAA1447 protein (predicted) (RGD1306500_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638308-S	ILMN_65659	BCLAF1	XM_214967.4	XM_214967.4		293017	109457610	XM_214967.4	Bclaf1	XP_214967.4	ILMN_1355583	0004070671	S	5352	GATGGCTAAACGATTCTTCCTCAGTGTGGTGTATATTTCAACAGGGACCC	1	+	15634116-15634165	1p12	PREDICTED: Rattus norvegicus BCL2-associated transcription factor 1 (Bclaf1), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660516-S	ILMN_55484	LOC363318	XM_343658.2	XM_343658.2		363318	62660516	XM_343658.2	LOC363318	XP_343659.2	ILMN_1355747	0007000156	S	1240	CACCAATGCTCACAAGAAAGGCTTTGGTTAAAGAAGGGAGGTACTGAGAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC363318), mRNA.					
Rattus norvegicus	RefSeq	GI_62642622-S	ILMN_52517	LOC499394	XM_574710.1	XM_574710.1		499394	62642622	XM_574710.1	LOC499394	XP_574710.1	ILMN_1369308	0003610066	S	586	GATCCTTCCCTTTGCTCAGGTTTCCTGGGAGCTGGAGGGGGTTTGAGTGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530406M24 (LOC499394), mRNA.					
Rattus norvegicus	RefSeq	GI_62651616-S	ILMN_50535	LOC299598	XM_216840.2	XM_216840.2		299598	62651616	XM_216840.2	LOC299598	XP_216840.1	ILMN_1369993	0003940408	S	2678	GTCCTTTGACTTTGAGGACAGGATCACATGAGACAGACTGGTGATATTGC					PREDICTED: Rattus norvegicus hypothetical LOC299598 (predicted) (LOC299598), mRNA.					
Rattus norvegicus	RefSeq	GI_62663601-S	ILMN_289484	HIST1H2BN_PREDICTED	XM_001061411.1	XM_001061411.1		291157	109505960	XM_001061411.1	Hist1h2bn_predicted	XP_001061411.1	ILMN_1360331	0004560647	S	359	CCAAGTACACCAGCTCCAAGGATGTCTGGCAAGTGTATTGTCCTGGCCTG				17q11	PREDICTED: Rattus norvegicus histone 1, H2bn (predicted) (Hist1h2bn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645770-S	ILMN_52010	LOC497779	XM_579526.1	XM_579526.1		497779	62645770	XM_579526.1	LOC497779	XP_579526.1	ILMN_1351122	0003120053	S	2568	GTATTTCATGGATGACGCAGAAAAAACATACGTGCCCATGACTGAGGACA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031736 (LOC497779), mRNA.					
Rattus norvegicus	RefSeq	GI_14861863-S	ILMN_275498	PPM1B	NM_033096.1	NM_033096.1		24667	14861863	NM_033096.1	Ppm1b	NP_149087.1	ILMN_1354931	0007000022	S	3062	ACTACTTGTCCCTTTACTGGGGGTTTGGGGGTTGTTAAAAGATGGGGAGG	6	+	8373600-8373649	6q12	Rattus norvegicus protein phosphatase 1B, magnesium dependent, beta isoform (Ppm1b), mRNA.	A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	Pp2c2	Pp2c2
Rattus norvegicus	RefSeq	GI_47606356-S	ILMN_274598	OLR77	NM_001001287.1	NM_001001287.1		405907	47606356	NM_001001287.1	Olr77	NP_001001287.1	ILMN_1357217	0004010358	S	686	GCTCTGTCCTCACTATTGCCTCCTCTGAAGAACAGCACAAGGCCTTCAGT	1	+	160853782-160853831	1q32	Rattus norvegicus olfactory receptor 77 (Olr77), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr77	Olr77
Rattus norvegicus	RefSeq	GI_62648695-S	ILMN_296379	LOC679161	XM_001054250.1	XM_001054250.1		679161	109476158	XM_001054250.1	LOC679161	XP_001054250.1	ILMN_1356677	0001580020	S	1222	CCTCTCTGGTTAAAGGCAGTCAACCGAATCCCAGTGGCTCTTCCTTCTAC					PREDICTED: Rattus norvegicus similar to transmembrane protein 64 (LOC679161), mRNA.					
Rattus norvegicus	RefSeq	GI_62639918-S	ILMN_69756	LOC294435	XM_228202.3	XM_228202.3		294435	62639918	XM_228202.3	LOC294435	XP_228202.3	ILMN_1367629	0002370152	S	3605	GTTCCATACTCAGTGCCTCTGCAAGCCGTCCTTGTCCGGTATCCTCAGGC					PREDICTED: Rattus norvegicus similar to Aldo-keto reductase family 1, member B8 (LOC294435), mRNA.					
Rattus norvegicus	RefSeq	GI_20806132-S	ILMN_283117	RBM16	NM_139094.1	NM_139094.1		245926	20806132	NM_139094.1	Rbm16	NP_620794.1	ILMN_1364407	0003990592	S	4479	GGTGTGGCACATCTCCATATCTCTAGGCTGCTGCAGGGTTTTAAGGTGAC	1	+	38173356-38173405	1p11	Rattus norvegicus RNA binding motif protein 16 (Rbm16), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]	The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62658159-I	ILMN_53589	ALG3_PREDICTED	XM_573315.1	XM_573315.1		287983	62658159	XM_573315.1	Alg3_predicted	XP_573315.1	ILMN_1375611	0001500672	S	103	AGGGTTTCATCAATGGGCCGGGTGGGTACCAGGCGGATGACCCTGACCTC				11q23	PREDICTED: Rattus norvegicus asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) (predicted) (Alg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655602-S	ILMN_61445	LOC501672	XM_577069.1	XM_577069.1		501672	62655602	XM_577069.1	LOC501672	XP_577069.1	ILMN_1358967	0004570438	S	834	ACAGACAGAACCTGGAAATGTGGTTCAGGTGGGCATTGTGGGCAGGACAG					PREDICTED: Rattus norvegicus similar to Abcc6 protein (LOC501672), mRNA.					
Rattus norvegicus	RefSeq	GI_62664731	ILMN_58067	LOC498896	XM_574183.1	XM_574183.1		498896	62664731	XM_574183.1	LOC498896	XP_574183.1	ILMN_1649767	0000380546	S	754	AAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTAT					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC498896), mRNA.					
Rattus norvegicus	RefSeq	GI_62646946-S	ILMN_66026	LOC500063	XM_575417.1	XM_575417.1		500063	62646946	XM_575417.1	LOC500063	XP_575417.1	ILMN_1351687	0000630497	S	551	GGGGAGGATGAGTCTTGTGAGACTGCTGAGGAAGGCAACCCCCTTAAGCT					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC500063), mRNA.					
Rattus norvegicus	RefSeq	GI_27673564-S	ILMN_293677	RGD1559808_PREDICTED	XM_001065275.1	XM_001065275.1		316158	109514116	XM_001065275.1	RGD1559808_predicted	XP_001065275.1	ILMN_1349763	0001240619	S	21	GAAAAGGAGAAACAACGGTCGGACCAAAAAGGGCCGGGGTCATGTGCAGC				9q11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (predicted) (RGD1559808_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576902-S	ILMN_281070	OLR806	NM_001000976.1	NM_001000976.1		405331	47576902	NM_001000976.1	Olr806	NP_001000976.1	ILMN_1363810	0000580139	S	870	CAGTCTGAGGAATAAGGAAGTCAAGGGTGCTTGGCAGAAACTACTCGGAA	4	+	70622924-70622973	4q23	Rattus norvegicus olfactory receptor 806 (Olr806), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr806	Olr806
Rattus norvegicus	RefSeq	GI_62664104-S	ILMN_270265	RGD1308160_PREDICTED	XM_001055112.1	XM_001055112.1		307556	109507004	XM_001055112.1	RGD1308160_predicted	XP_001055112.1	ILMN_1371805	0001450446	S	2394	CTGTCAGCTGCAAAGAAAGCTGGGCCAGAAATGGCAAGAGTACTTCCGAC				18p12	PREDICTED: Rattus norvegicus similar to Myosin heavy chain A (MHC A) (predicted) (RGD1308160_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164124-S	ILMN_289886	PLA2G7	NM_001009353.1	NM_001009353.1		301265	57164124	NM_001009353.1	Pla2g7	NP_001009353.1	ILMN_1366506	0004760035	S	1426	TGATCAGTGGGACTGTCTGGTGGAGGGAGAGAACGAGAACCTCATCCCGG	9	-	13058284-13058333	9q12	Rattus norvegicus phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) (Pla2g7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; An enzyme complex composed of two catalytic alpha subunits, which form a catalytic dimer, and a non-catalytic, regulatory beta subunit; the catalytic dimer may be an alpha1/alpha1 or alpha2/alpha2 homodimer, or an alpha1/alpha2 heterodimer. Modulates the action of platelet-activating factor (PAF) [goid 8247] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC95107	MGC95107
Rattus norvegicus	RefSeq	GI_55742812-S	ILMN_266486	BDH1	NM_053995.3	NM_053995.3		117099	55742812	NM_053995.3	Bdh1	NP_446447.2	ILMN_1357757	0003990435	S	1370	GTGGTGAATGGTTTGGGCCTTCACAAATACAGGGCACTGGTGGGTGGCCC	11	-	71130758-71130807	11q22	Rattus norvegicus 3-hydroxybutyrate dehydrogenase, type 1 (Bdh1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+ [goid 3858] [evidence ISS]; Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+ [goid 3858] [evidence TAS]; Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+ [goid 3858] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC94818; Bdh	MGC94818; Bdh
Rattus norvegicus	RefSeq	GI_54262175-S	ILMN_269645	HSPB8	NM_053612.2	NM_053612.2		113906	54262175	NM_053612.2	Hspb8	NP_446064.1	ILMN_1353138	0001400270	S	1599	TGTCTTCAGGCAGCTCCACCAGGAACCAAGCAAAGGTCAGACAGCCTGGC	12	+	41421390-41421439	12q16	Rattus norvegicus heat shock protein 8 (Hspb8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	MGC72354; Cryac; Hsp22	MGC72354; Cryac; Hsp22
Rattus norvegicus	RefSeq	GI_57527583-S	ILMN_265559	RGD1304567	NM_001009711.1	NM_001009711.1		362671	57527583	NM_001009711.1	RGD1304567	NP_001009711.1	ILMN_1369087	0005900494	S	774	TAACTGAGCGCAAACTTGACATGGATGTCACTGGCACAGATGCCCGGCTC	5	+	170747309-170747358	5q36	Rattus norvegicus similar to RIKEN cDNA A430005L14 (RGD1304567), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]			MGC105699	MGC105699
Rattus norvegicus	RefSeq	GI_62659305-S	ILMN_61006	LOC498228	XM_573448.1	XM_573448.1		498228	62659305	XM_573448.1	LOC498228	XP_573448.1	ILMN_1353003	0001580180	S	3337	GTGTGTGGAGCATCTGCTACGTGCCCTACATGGGAACTGCCTTCCAAATG				13q13	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp761N1114 (LOC498228), mRNA.					
Rattus norvegicus	RefSeq	GI_34858188-S	ILMN_52520	RGD1563451_PREDICTED	XM_227350.3	XM_227350.3		310595	109465168	XM_227350.3	RGD1563451_predicted	XP_227350.3	ILMN_1360141	0000130300	S	474	GCCTGGACATAACATGACACCTACAAACAAGGATCCAAGGCAGGAGTTGG	2	-	187034301-187034350	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1563451_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654574-S	ILMN_67310	ANKRD50_PREDICTED	XM_215553.4	XM_215553.4		294988	109464781	XM_215553.4	Ankrd50_predicted	XP_215553.4	ILMN_1368928	0006350520	S	4418	GTGCCTACCCAGTAAGGCTGCCATTCTCAGCATAACCCCCATGCTGAAGC	2	-	125377457-125377506	2q25	PREDICTED: Rattus norvegicus ankyrin repeat domain 50 (predicted) (Ankrd50_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643366-S	ILMN_67310	ANKRD50_PREDICTED	XM_215553.4	XM_215553.4		294988	109464781	XM_215553.4	Ankrd50_predicted	XP_215553.4	ILMN_1350817	0001660692	S	4022	AGCCACAGTTTCTCATCCACCAGCAGGGCGGCGAGCAGAAGAGGAGGAAT	2	-	125379432-125379481	2q25	PREDICTED: Rattus norvegicus ankyrin repeat domain 50 (predicted) (Ankrd50_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662833-S	ILMN_275112	ASH2L_PREDICTED	XM_001062523.1	XM_001062523.1		290829	109504281	XM_001062523.1	Ash2l_predicted	XP_001062523.1	ILMN_1361125	0000050142	S	2068	CTCTGAGTGCCGTAAATCAGCCGCCGACTCTGAAGAGCCCATAAGCTCCA				16q12.4	PREDICTED: Rattus norvegicus ash2 (absent, small, or homeotic)-like (Drosophila) (predicted) (Ash2l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576060-S	ILMN_264909	OLR1421	NM_001000780.1	NM_001000780.1		405057	47576060	NM_001000780.1	Olr1421	NP_001000780.1	ILMN_1365176	0001660242	S	785	ACTACATGCTACCTATCTCGTTCCACACCCCTGAGAAGAACATGGTGGTG	10	-	44309556-44309605	10q22	Rattus norvegicus olfactory receptor 1421 (Olr1421), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1421	Olr1421
Rattus norvegicus	RefSeq	GI_11559995-S	ILMN_279985	CXCL5	XM_001068757.1	XM_001068757.1		60665	109499548	XM_001068757.1	Cxcl5	XP_001068757.1	ILMN_1369980	0001050600	S	188	TGATCGCTAATTTGGAGGTGATCCCTGCAGGTCCACATTGCCCCAAGGTG	14	-	18825905-18825954	14p22	PREDICTED: Rattus norvegicus chemokine (C-X-C motif) ligand 5 (Cxcl5), mRNA.					
Rattus norvegicus	RefSeq	GI_62665018-S	ILMN_50223	LOC304657	XM_222462.2	XM_222462.2		304657	62665018	XM_222462.2	LOC304657	XP_222462.2	ILMN_1350421	0003450601	S	135	AAGGCTGCAAGGAGAATCTTCCAGGAGAAAATCCCCGCCGTTTCGTTGTC				6q16	PREDICTED: Rattus norvegicus similar to M2 ribonucleotide reductase (LOC304657), mRNA.					
Rattus norvegicus	RefSeq	GI_47577306-S	ILMN_276682	OLR718	NM_001000361.1	NM_001000361.1		295910	47577306	NM_001000361.1	Olr718	NP_001000361.1	ILMN_1373068	0002810603	S	432	TGCAACCTGGGTTGGAGGGTTTGCACACTCTGTGGCTCAAGTTCTCTTTG	3	-	74214806-74214855	3q24	Rattus norvegicus olfactory receptor 718 (Olr718), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr718	Olr718
Rattus norvegicus	RefSeq	GI_42476286-S	ILMN_284521	TGM2	NM_019386.2	NM_019386.2		56083	42476286	NM_019386.2	Tgm2	NP_062259.2	ILMN_1362327	0000770408	S	3242	TCAAGCTGGAAGGCTGCAGTGTGGAGGGGTTTCTAGGGGGTGAGGTCAGA	3	-	148833083-148833132	3q42	Rattus norvegicus transglutaminase 2, C polypeptide (Tgm2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence IEA]; The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glutamine to produce N6-(L-isoglutamyl)-L-lysine [goid 18153] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IMP]	Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IDA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IEA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IC ]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	TgaseII	TgaseII
Rattus norvegicus	RefSeq	GI_62651751-S	ILMN_267846	MUM1_PREDICTED	XM_001076641.1	XM_001076641.1		362838	109481581	XM_001076641.1	Mum1_predicted	XP_001076641.1	ILMN_1352857	0006760253	S	2480	GCAGTGTGGCTGGCATGTACGCTTAGGTCTTGTGTTGCTTGGTGTGTCAG				7q11	PREDICTED: Rattus norvegicus melanoma associated antigen (mutated) 1 (predicted) (Mum1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650647-S	ILMN_70119	LOC500647	XM_576024.1	XM_576024.1		500647	62650647	XM_576024.1	LOC500647	XP_576024.1	ILMN_1368136	0004760242	S	176	CCGAGGAAGAGCGGGAGAAAGGGTAAGTATGGCACAGTCACAAGGCTGGG					PREDICTED: Rattus norvegicus similar to inner mitochondrial membrane peptidase 2 (LOC500647), mRNA.					
Rattus norvegicus	RefSeq	GI_62662944-S	ILMN_293526	LOC290876	NM_001037182.1	NM_001037182.1		290876	81295332	NM_001037182.1	LOC290876	NP_001032259.1	ILMN_1364687	0003170707	S	929	GAACCAACTCTACAGGACCAACAGGCACTCCCGCTTCCTGGCTATCACAG	16	+	80842077-80842126	16q12.5	Rattus norvegicus similar to RIKEN cDNA 1700029H14 (LOC290876), mRNA.				MGC116066	MGC116066
Rattus norvegicus	RefSeq	GI_62639120-S	ILMN_61677	LOC365214	XM_574381.1	XM_574381.1		365214	62639120	XM_574381.1	LOC365214	XP_574381.1	ILMN_1350875	0004280609	S	1689	CTTGCACAGCAGATAACCGGGATGCGGTTCTGCGAAGCCAGTGCCAAGGA				1q21	PREDICTED: Rattus norvegicus similar to zinc finger protein ZFP235 (LOC365214), mRNA.					
Rattus norvegicus	RefSeq	GI_62639713-S	ILMN_274221	RGD1559447_PREDICTED	XM_001079083.1	XM_001079083.1		499149	109461907	XM_001079083.1	RGD1559447_predicted	XP_001079083.1	ILMN_1369888	0000610451	S	366	GCTGGCTGGACTCTTACATGCAGAAGCTGTTGCTACTGGACGCGCCCTGA				1q22	PREDICTED: Rattus norvegicus similar to tuberoinfundibular 39 residue protein precursor (predicted) (RGD1559447_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62339297-S	ILMN_276093	PCDHB11_PREDICTED	XM_001055576.1	XM_001055576.1		291648	109506479	XM_001055576.1	Pcdhb11_predicted	XP_001055576.1	ILMN_1360912	0002650408	S	2028	GCATGACCCCATTCACGGGGATGAAGAGGTGCTCACGCTGTACCTAGTCA	18	+	30232847-30232896	18p11	PREDICTED: Rattus norvegicus protocadherin beta 11 (predicted) (Pcdhb11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576602-S	ILMN_265981	OLR862	NM_001001071.1	NM_001001071.1		405961	47576602	NM_001001071.1	Olr862	NP_001001071.1	ILMN_1355684	0006200358	S	885	CAAGGACATCAAAAGGGCATTTCTCAAGGTGATGGGACATGTTAAGGTGG	5	-	139263828-139263877	5q36	Rattus norvegicus olfactory receptor 862 (Olr862), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr862	Olr862
Rattus norvegicus	RefSeq	GI_62718245-S	ILMN_276112	LOC689541	XM_001071141.1	XM_001071141.1		689541	109513352	XM_001071141.1	LOC689541	XP_001071141.1	ILMN_1365579	0007040520	S	658	AGAAGAAGTTGGTCCCACGGAAGCAGGGGAGCAAGGAGGGACATCTTGAT	Un|NW_047878.1	+	3345965-3346014		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC689541), mRNA.					
Rattus norvegicus	RefSeq	GI_47577486-S	ILMN_284589	OLR481	NM_001000684.1	NM_001000684.1		404889	47577486	NM_001000684.1	Olr481	NP_001000684.1	ILMN_1374880	0005390446	S	508	GACTCCAACCTAGTGAACCAGTTCTTCTGTGAAGACATTCCTCTTATGGC	3	-	69338306-69338355	3q24	Rattus norvegicus olfactory receptor 481 (Olr481), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr481	Olr481
Rattus norvegicus	RefSeq	GI_62658739	ILMN_267736	NSUN5_PREDICTED	XM_001071177.1	XM_001071177.1		288595	109497089	XM_001071177.1	Nsun5_predicted	XP_001071177.1	ILMN_1650363	0003120341	S	1163	ACGTTCAGGCTGGCTCCTGTCTTACCCACATGGCCTCACCGAGGTCTGAG				12q12	PREDICTED: Rattus norvegicus NOL1/NOP2/Sun domain family, member 5 (predicted) (Nsun5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576790-S	ILMN_280269	OLR189	NM_001000184.1	NM_001000184.1		293333	47576790	NM_001000184.1	Olr189	NP_001000184.1	ILMN_1361094	0000730136	S	431	CTATTCTGGGTGTACTCATCATAGTCAGAACTTTGGTATTTGTGACTCCG	1	+	162843466-162843515	1q33	Rattus norvegicus olfactory receptor 189 (Olr189), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162938513-162939454_ORF; Olr189	ratchr1-162938513-162939454_ORF; Olr189
Rattus norvegicus	RefSeq	GI_62666754	ILMN_274192	GPR143_PREDICTED	XM_001064908.1	XM_001064908.1		302619	109511683	XM_001064908.1	Gpr143_predicted	XP_001064908.1	ILMN_1651192	0001980113	S	1105	AAACCCCAGGAAGGTGGTGTGTGTTGGGGGGCACACTTCTGATGAGGTGC				Xq21	PREDICTED: Rattus norvegicus G protein-coupled receptor 143 (predicted) (Gpr143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663540-S	ILMN_61016	LOC502121	XM_577569.1	XM_577569.1		502121	62663540	XM_577569.1	LOC502121	XP_577569.1	ILMN_1360512	0001580097	S	1144	AGGCTCCTGTGGCTGCTGATGGGCCAGTGCATTCTGCCAGTAACAATCCG					PREDICTED: Rattus norvegicus similar to CDK5 regulatory subunit associated protein 1 (LOC502121), mRNA.					
Rattus norvegicus	RefSeq	GI_62664031-S	ILMN_288992	LOC680014	XM_001055446.1	XM_001055446.1		680014	109506280	XM_001055446.1	LOC680014	XP_001055446.1	ILMN_1361261	0002630390	S	4123	GCTTATGTTTGTGACACTGATGGTGGCAGGGGAAGCTCTCTGATGTGGAG	18	-	1935660-1935709	18p13	PREDICTED: Rattus norvegicus similar to N-acetyltransferase ESCO1 (Establishment of cohesion 1 homolog 1) (ECO1 homolog 1) (LOC680014), mRNA.					
Rattus norvegicus	RefSeq	GI_56090326-S	ILMN_299764	CYB561D2	NM_001007753.1	NM_001007753.1		363137	56090326	NM_001007753.1	Cyb561d2	NP_001007754.1	ILMN_1373531	0005670070	S	1247	AGCTGACTGGGTTGGGGGACATTTCAGGTACTAGGGCACTCAGGGGTAGA	8	-	112787209-112787258	8q32	Rattus norvegicus cytochrome b-561 domain containing 2 (Cyb561d2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95239	MGC95239
Rattus norvegicus	RefSeq	GI_62718788-S	ILMN_62490	LOC501476	XM_576884.1	XM_576884.1		501476	62718788	XM_576884.1	LOC501476	XP_576884.1	ILMN_1372223	0005910605	S	1146	CCTGGGCCTCTGGGGTCATACCAGGTTTTACAACACTCAGTGTGTGGACC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501476), mRNA.					
Rattus norvegicus	RefSeq	GI_24308511-S	ILMN_280184	PRL7B1	NM_153738.1	NM_153738.1		266804	24308511	NM_153738.1	Prl7b1	NP_714960.1	ILMN_1369152	0006770551	S	444	GCCCTCTATATCACATGGAGACAGAACTCAAGAGTATGACAGGAGCCCCC	17	+	43790551-43790600	17p11	Rattus norvegicus prolactin family 7, subfamily b, member 1 (Prl7b1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpn	Prlpn
Rattus norvegicus	RefSeq	GI_62655884-S	ILMN_262694	WDR24	XM_001063483.1	XM_001063483.1		360497	109487916	XM_001063483.1	Wdr24	XP_001063483.1	ILMN_1374432	0002680039	S	2647	CCGTGAGCTGCCTCAACCAAGCCTCCACCACCCTGCATGTCAACTGTAGT	10	+	15093775-15093824	10q12	PREDICTED: Rattus norvegicus WD repeat domain 24 (Wdr24), mRNA.					
Rattus norvegicus	RefSeq	GI_13242280-S	ILMN_273898	BXDC5	XM_001077236.1	XM_001077236.1		499725	109467668	XM_001077236.1	Bxdc5	XP_001077236.1	ILMN_1349497	0001400369	S	1767	GTGGGCTCACACAGGCAACAAACAACTCTAGTGGCGTCAGCAGTTAGTGC				2q44	PREDICTED: Rattus norvegicus brix domain containing 5, transcript variant 2 (Bxdc5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644540-S	ILMN_273898	BXDC5	XM_001077236.1	XM_001077236.1		499725	109467668	XM_001077236.1	Bxdc5	XP_001077236.1	ILMN_1357860	0006550427	S	904	CACACGGCTAGGTCACTCTATCGGACGTATGTTTGCTTCTCTCTTTCCTC				2q44	PREDICTED: Rattus norvegicus brix domain containing 5, transcript variant 2 (Bxdc5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638218-S	ILMN_269988	RGD1564259_PREDICTED	XM_001069589.1	XM_001069589.1		292477	109460443	XM_001069589.1	RGD1564259_predicted	XP_001069589.1	ILMN_1365287	0002360504	S	3302	GCAGTGAAGTTGGAGGCGGAGAAGAAGACCGCAGCCTCTGACCCACAGAA				1p13	PREDICTED: Rattus norvegicus similar to OTTHUMP00000040155 (predicted) (RGD1564259_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665728-S	ILMN_283200	RGD1306008_PREDICTED	XM_001068640.1	XM_001068640.1		294301	109509759	XM_001068640.1	RGD1306008_predicted	XP_001068640.1	ILMN_1370514	0005910138	S	983	GACCTGGGATGCCGACCCTCTGTCTGCCGACCCAGCCATTCCTACTTTAA				20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930511I11 (predicted) (RGD1306008_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666080-S	ILMN_57342	LOC502424	XM_577906.1	XM_577906.1		502424	62666080	XM_577906.1	LOC502424	XP_577906.1	ILMN_1371858	0000110102	S	719	CGACCAGCCCCACTTCCACAAAAAGCAGGAACTGGCCAGGCAAATACAGC					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502424), mRNA.					
Rattus norvegicus	RefSeq	GI_27706429-S	ILMN_282088	RGD1562871_PREDICTED	XM_001060163.1	XM_001060163.1		302366	109512210	XM_001060163.1	RGD1562871_predicted	XP_001060163.1	ILMN_1374778	0001580519	S	285	GAAGGCAGAAGAAAAGGCTGCAGTCGAGTCTGACCAGGAAGAGCGCCTCC				Xq31	PREDICTED: Rattus norvegicus similar to BMI1-like protein (predicted) (RGD1562871_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663624-S	ILMN_286729	RGD1560514_PREDICTED	XM_001059259.1	XM_001059259.1		498757	109505933	XM_001059259.1	RGD1560514_predicted	XP_001059259.1	ILMN_1362135	0006840170	S	1721	TCGTGTCTGGAAGAAGATACAGCTCCAATGGCCTCATGTCCTGGGGAAGG				17q11	PREDICTED: Rattus norvegicus similar to acyloxyacyl hydrolase (predicted) (RGD1560514_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424337-S	ILMN_290296	HADHB	NM_133618.1	NM_133618.1		171155	19424337	NM_133618.1	Hadhb	NP_598302.1	ILMN_1351996	0000610110	S	1587	GCGGTCAAGCCTTGCCAGTGTTCGAGCTTTCCGATAATCACAGCTTCTGC	6	-	26139680-26139729	6q14	Rattus norvegicus hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; A complex that includes the long-chain 3-hydroxyacyl-CoA dehydrogenase and long-chain enoyl-CoA hydratase activities in two subunits (alpha and beta), catalyzing two steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix [goid 16507] [evidence IDA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IDA]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence ISS]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence IEA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O [goid 4300] [evidence IDA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O [goid 16508] [evidence IDA]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+. Acts most rapidly on derivatives with chain length 8 or 10 [goid 16509] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62638989-S	ILMN_54162	LOC292543	XM_218182.3	XM_218182.3		292543	62638989	XM_218182.3	LOC292543	XP_218182.3	ILMN_1352856	0004760017	S	1690	AGGAACTGACTGCAGAGCCCAGGGAGGGGGGTGTGTCTTTCACTCATGGA				1q12	PREDICTED: Rattus norvegicus similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 (LOC292543), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662027-S	ILMN_55400	TGDS_PREDICTED	XM_224518.3	XM_224518.3		306164	62662027	XM_224518.3	Tgds_predicted	XP_224518.3	ILMN_1360271	0004050044	S	1741	CTGCAGGATTCGGGATAGCAGGACCCAGTGTTTGTGAGGTGACTTGTCAG				15q24	PREDICTED: Rattus norvegicus TDP-glucose 4,6-dehydratase (predicted) (Tgds_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658871-S	ILMN_52646	LOC498182	XM_573397.1	XM_573397.1		498182	62658871	XM_573397.1	LOC498182	XP_573397.1	ILMN_1357744	0004610671	S	2136	ATCAGCCCTACACCACTGCCTGATTCCGACGAGGATGATGACCTGGGCCT					PREDICTED: Rattus norvegicus similar to MGC81602 protein (LOC498182), mRNA.					
Rattus norvegicus	RefSeq	GI_62653963-S	ILMN_56311	RAB39_PREDICTED	XM_236242.4	XM_236242.4		315668	109483444	XM_236242.4	Rab39_predicted	XP_236242.4	ILMN_1361756	0006660292	S	531	CAACGTCAGGTTTCAAGGGAGGAAGCTGAGAAACTGTCAAAGGACTGTGG	8	-	57156221-57156270	8q24	PREDICTED: Rattus norvegicus RAB39, member RAS oncogene family (predicted) (Rab39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643791	ILMN_65140	ZBTB7B_PREDICTED	XM_215633.4	XM_215633.4		295248	109465065	XM_215633.4	Zbtb7b_predicted	XP_215633.2	ILMN_1650833	0006550707	S	2124	GGCCCTTCCCCCAGAGCTTTCATTCCAGTTCCAAGCTGAGGTTTTTGGGG	2	-	181576232-181576281	2q34	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 7B (predicted) (Zbtb7b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34875639-S	ILMN_161847	LOC363221	XM_343560.1	XM_343560.1			34875639	XM_343560.1	LOC363221		ILMN_2039766	0007560142	S	513	GCTGCCAACCCAGAGCAAAGCTAGCTTCCCAAGCATCCTCAATATGGACA					Rattus norvegicus similar to DNA segment, Chr 1, Brigham & Womens Genetics 0212 expressed (LOC363221), mRNA.					
Rattus norvegicus	RefSeq	GI_62641252-S	ILMN_273415	LOC368120	XM_001079648.1	XM_001079648.1		368120	109462834	XM_001079648.1	LOC368120	XP_001079648.1	ILMN_1360840	0000360603	S	3687	CACCTCATAGTCTAACATGCTCAAGCTGCCTCTCTCCAATGAGTCTTGGC				1q36	PREDICTED: Rattus norvegicus similar to KOX31-like zinc finger protein (LOC368120), mRNA.					
Rattus norvegicus	RefSeq	GI_62655757-S	ILMN_287659	RGD1307032_PREDICTED	XR_007456.1	XR_007456.1		360486	109490265	XR_007456.1	RGD1307032_predicted		ILMN_1371538	0004480022	S	1371	AAGCGACAGTTCCAACCCTTGAGAGACATGGTCAGGCTGGGGCCTTCCAG				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1520401A03 gene (predicted) (RGD1307032_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667601-S	ILMN_272760	RGD1559982_PREDICTED	XM_001058237.1	XM_001058237.1		293850	109462358	XM_001058237.1	RGD1559982_predicted	XP_001058237.1	ILMN_1362643	0003440286	S	1306	GCAGCTCTGGCTGAAAATGCAGAAGCCCAGGAGGGGGAAGGAGTGGAAGT				Xq37	PREDICTED: Rattus norvegicus similar to paraneoplastic antigen like 6A (predicted) (RGD1559982_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576878-S	ILMN_272658	OLR221	NM_001000200.1	NM_001000200.1		293367	47576878	NM_001000200.1	Olr221	NP_001000200.1	ILMN_1372509	0002970014	S	688	GCTGGAGAAGGGAGACTCAAGGTCTTCTCCACCTGTGGCTCCCACCTCAT	1	-	164180147-164180196	1q33	Rattus norvegicus olfactory receptor 221 (Olr221), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr221	Olr221
Rattus norvegicus	RefSeq	GI_62647205-S	ILMN_278786	RGD1561800_PREDICTED	XM_001054222.1	XM_001054222.1		500111	109473453	XM_001054222.1	RGD1561800_predicted	XP_001054222.1	ILMN_1362994	0004280025	S	449	TCCGAGAGCTGCTGCCTGGCCTCAAAGTCATAGACGGGGAACGTGTGAGT				4q24	PREDICTED: Rattus norvegicus similar to CDNA sequence BC027309 (predicted) (RGD1561800_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640734-S	ILMN_51797	RGD1559901_PREDICTED	XM_574478.2	XM_574478.2		499185	109458935	XM_574478.2	RGD1559901_predicted	XP_574478.2	ILMN_1360066	0005700504	S	690	CGAGCCTTCCTTGGGAGAACATTCCTCTCCTTGCACAGAAGCTGGAGGTG	1	+	134517076-134517125	1q31	PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein S11 (predicted) (RGD1559901_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660652-S	ILMN_274001	SH3BP2	XM_001059805.1	XM_001059805.1		305450	109500763	XM_001059805.1	Sh3bp2	XP_001059805.1	ILMN_1369384	0001430523	S	1525	CCACAGAGTCCTGCGAGGTGGAAAGGTTGTTCAAAGCCACAAACCCTCTC				14q21	PREDICTED: Rattus norvegicus SH3-domain binding protein 2 (Sh3bp2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62649449-S	ILMN_52289	MOBKL2C_PREDICTED	XM_233403.3	XM_233403.3		313511	62649449	XM_233403.3	Mobkl2c_predicted	XP_233403.3	ILMN_1367904	0001690735	S	648	TGGGAGAGGGGACCCTTAGGAGCCTGCTGGCAGAGAAATGTGAAGGCCTA				5q36	PREDICTED: Rattus norvegicus MOB1, Mps One Binder kinase activator-like 2C (yeast) (predicted) (Mobkl2c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173799-S	ILMN_298267	ACTN3	NM_133424.1	NM_133424.1		171009	19173799	NM_133424.1	Actn3	NP_596915.1	ILMN_1362652	0002480097	S	2782	GGATTCCACTGTCCCTCAGAGCAAGGGCTTCAAATCATCCAGCACCAACC	1	-	207475605-207475654	1q43	Rattus norvegicus actinin alpha 3 (Actn3), mRNA.	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657357-S	ILMN_274312	LOC688266	XM_001081700.1	XM_001081700.1		688266	109492249	XM_001081700.1	LOC688266	XP_001081700.1	ILMN_1364356	0004810411	S	1707	CCTGGGGGAGTAAGCAGACACTTTCCCTGAGGTGGGCTGAAGAACTGGGT					PREDICTED: Rattus norvegicus similar to Myosin-15 (Myosin XV) (Unconventional myosin-15) (LOC688266), mRNA.					
Rattus norvegicus	RefSeq	GI_47576792-S	ILMN_297195	OLR829	NM_001000901.1	NM_001000901.1		405211	47576792	NM_001000901.1	Olr829	NP_001000901.1	ILMN_1368815	0004150136	S	924	TGATGCTCTGTCCAGGGTTCAATTGCACAGATATCAGAGGAGCAACGCAC	4	+	152864564-152864613	4q42	Rattus norvegicus olfactory receptor 829 (Olr829), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr829	Olr829
Rattus norvegicus	RefSeq	GI_62651855-S	ILMN_63039	LOC500812	XM_576199.1	XM_576199.1		500812	62651855	XM_576199.1	LOC500812	XP_576199.1	ILMN_1366149	0005360204	S	2361	GAGACACTACAAGGGGATGCCTTTATACAAAGCTCCTGGGCCCCCCTGAG					PREDICTED: Rattus norvegicus similar to envelope (LOC500812), mRNA.					
Rattus norvegicus	RefSeq	GI_51948479-S	ILMN_263801	MTIF2	NM_001004254.1	NM_001004254.1		305606	51948479	NM_001004254.1	Mtif2	NP_001004254.1	ILMN_1354123	0001400300	S	1853	GCAACAGATTGCCCTACAAGGTGGAGGAGTACCCAATAGGTGAGGCTTCT	14	+	110557949-110557987:110558369-110558379	14q22	Rattus norvegicus mitochondrial translational initiation factor 2 (Mtif2), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence TAS]; Any process that modulates the frequency, rate or extent of translational initiation [goid 6446] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence TAS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with any part of the small ribosomal subunit [goid 43024] [evidence ISS]	MGC94962	MGC94962
Rattus norvegicus	RefSeq	GI_11177891-S	ILMN_295500	KCNT1	NM_021853.1	NM_021853.1		60444	11177891	NM_021853.1	Kcnt1	NP_068625.1	ILMN_1362650	0004120601	S	3533	CCCTTTCCTATGTACTCATCAACCCCCCGCCAGACACAAGACTGGAGCCC	3	+	4087754-4087803	3p13	Rattus norvegicus potassium channel, subfamily T, member 1 (Kcnt1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Slack; rSlo2	Slack; rSlo2
Rattus norvegicus	RefSeq	GI_47578002-S	ILMN_282671	OLR1077	NM_001000941.1	NM_001000941.1		405280	47578002	NM_001000941.1	Olr1077	NP_001000941.1	ILMN_1368189	0006350059	S	478	AGCATGATGGTGCTGCGGCTGGCCTTCTGTACAGACTTGGAAATCCCGCA	7	-	12100419-12100468	7q11	Rattus norvegicus olfactory receptor 1077 (Olr1077), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9507098-S	ILMN_267423	ST6GALNAC3	NM_019123.1	NM_019123.1		29758	9507098	NM_019123.1	St6galnac3	NP_061996.1	ILMN_1357862	0005130341	S	2821	CTGTGCCACCTCGACAGGGCTTTCCTACGATTAAGGGCTATGCTAACTCA				2q45	Rattus norvegicus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (St6galnac3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IDA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IDA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	Siat7c	Siat7c
Rattus norvegicus	RefSeq	GI_62639454-S	ILMN_292920	LOC365226	XM_001078974.1	XM_001078974.1		365226	109461637	XM_001078974.1	LOC365226	XP_001078974.1	ILMN_1357617	0005900551	S	255	TCGGCACCTCAAATGCCACAGCCCAGCAAGGCGCCACGTGTGCCACTATT				1q21	PREDICTED: Rattus norvegicus similar to ovo-like 2 isoform A (LOC365226), mRNA.					
Rattus norvegicus	RefSeq	GI_62645371-S	ILMN_266432	NUP160_PREDICTED	XM_001077803.1	XM_001077803.1		311182	109470294	XM_001077803.1	Nup160_predicted	XP_001077803.1	ILMN_1356626	0005900131	S	4305	CCCTGTCCTCAGGGCCAATTTTGATGACTGTAAATGATGTGTACGGCGCC				3q24	PREDICTED: Rattus norvegicus nucleoporin 160 (predicted) (Nup160_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661019-S	ILMN_266212	RGD1565434_PREDICTED	XM_001064648.1	XM_001064648.1		305675	109502129	XM_001064648.1	RGD1565434_predicted	XP_001064648.1	ILMN_1368310	0003780132	S	2922	CAGAGCGGCTACCACCTTGGACGAGCCCATTTGGAGGGCAGAGTTGGCCT				15p16	PREDICTED: Rattus norvegicus similar to synaptopodin 2-like (predicted) (RGD1565434_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576082-S	ILMN_265362	OLR1410	NM_001000784.1	NM_001000784.1		405062	47576082	NM_001000784.1	Olr1410	NP_001000784.1	ILMN_1355946	0004120348	S	660	TGCTCGAATTGCTGTCGCAGTCTTTCAGATACCTTCTGCCAAGGGCAGGC	10	+	36621290-36621339	10q22	Rattus norvegicus olfactory receptor 1410 (Olr1410), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1410	Olr1410
Rattus norvegicus	RefSeq	GI_62663795-S	ILMN_271321	RGD1564088_PREDICTED	XM_001068761.1	XM_001068761.1		291290	109506126	XM_001068761.1	RGD1564088_predicted	XP_001068761.1	ILMN_1364321	0004010068	S	106	CAGGCTATCAAGCCCAAGATGCCAAAGGGCCCCAGCTGTAAACTCAGCCA				17q12.3	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1564088_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655755-A	ILMN_274570	CLDN9	NM_001011889.1	NM_001011889.1		287099	58865347	NM_001011889.1	Cldn9	NP_001011889.1	ILMN_1376745	0003440494	S	1321	GTGGACTGTGACCTACTAGGGTTTCAGCTGGTCAAGTCTAGCCCAAGCAG	10	-	12947484-12947533	10q12	Rattus norvegicus claudin 9 (Cldn9), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662126-S	ILMN_66257	LOC364370	XM_344393.2	XM_344393.2		364370	62662126	XM_344393.2	LOC364370	XP_344394.2	ILMN_1366590	0004610181	S	361	AAGTGCGAATCTTCAGTGGAAACAGGGTGAGCAGCCAGCAGAAGGTGCAG					PREDICTED: Rattus norvegicus similar to T cell receptor (LOC364370), mRNA.					
Rattus norvegicus	RefSeq	GI_62667338-S	ILMN_278278	LOC678868	XM_001053582.1	XM_001053582.1		678868	109469959	XM_001053582.1	LOC678868	XP_001053582.1	ILMN_1372706	0002470619	S	5088	CATTGAGACCTTTGTGCGGCTAGTGTTCATCGTGCGCTCTGAGGCCCAGC					PREDICTED: Rattus norvegicus similar to PDZ domain containing 10 (LOC678868), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_18426819-S	ILMN_287717	PPP1R14A	NM_130403.1	NM_130403.1		114004	18426819	NM_130403.1	Ppp1r14a	NP_569087.1	ILMN_1374409	0000780167	S	221	GCAGGGAGGCAGACATGCCAGATGAGGTCAACATCGACGAGCTGCTGGAA	1	+	84423833-84423882	1q21	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14A (Ppp1r14a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cpi17	Cpi17
Rattus norvegicus	RefSeq	GI_62661962-S	ILMN_48403	LOC502014	XM_577442.1	XM_577442.1		502014	62661962	XM_577442.1	LOC502014	XP_577442.1	ILMN_1360206	0001740154	S	923	CTTCGTCAGTCAGCTGAGCACCTTCGTCAGTCAGCTGAGCACCTTCGTCA					PREDICTED: Rattus norvegicus LOC502014 (LOC502014), mRNA.					
Rattus norvegicus	RefSeq	GI_62648168-S	ILMN_266596	MRPL51_PREDICTED	XM_001063524.1	XM_001063524.1		297601	109474233	XM_001063524.1	Mrpl51_predicted	XP_001063524.1	ILMN_1358065	0005720435	S	556	CTGGAGAGACACATTTATCACCCCGAGAAGGGGAACAGGACTTAGCCCAG				4q42	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L51 (predicted) (Mrpl51_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642296-S	ILMN_57742	LOC309510	XM_220043.3	XM_220043.3		309510	62642296	XM_220043.3	LOC309510	XP_220043.3	ILMN_1370806	0002190647	S	3877	GGATAGCACCAGGACTGTTTCAAAAGCTTTGTCACCACCACGGATGCCGG				1q53	PREDICTED: Rattus norvegicus similar to mKIAA0940 protein (LOC309510), mRNA.					
Rattus norvegicus	RefSeq	GI_62654992-S	ILMN_67163	RGD1565095_PREDICTED	XM_578786.2	XM_578786.2		503252	109485956	XM_578786.2	RGD1565095_predicted	XP_578786.2	ILMN_1353292	0006380563	S	181	CTGTGTGCTCCAGGAAGGAAAGTCCCCACGGCAGTGCTTGAAGGAAGGCA	9	-	36373733-36373770:36375328-36375339	9q21	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC52110 (predicted) (RGD1565095_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41056214-S	ILMN_279984	XRCC5	NM_177419.1	NM_177419.1		363247	41056214	NM_177419.1	Xrcc5	NP_803154.1	ILMN_1361265	0004670050	S	2317	GAATCCAGGAGTACCAGCTCCGTGTTGCTGAGAGCTCCGACACCATCCCT	9	+	71581738-71581787	9q33	Rattus norvegicus X-ray repair complementing defective repair in Chinese hamster cells 5 (Xrcc5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A large protein complex which is involved in the repair of DNA double-strand breaks and V(D)J recombination events. In mammals, it consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer, Ku, the nuclear phosphoprotein XRCC4 and DNA ligase IV [goid 5958] [evidence TAS]	The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence NAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a hemopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells [goid 60218] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of the DNA helix [goid 4003] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Kup80; Ku80	Kup80; Ku80
Rattus norvegicus	RefSeq	GI_62648891-S	ILMN_276341	GBA2	XM_001069986.1	XM_001069986.1		298399	109476402	XM_001069986.1	Gba2	XP_001069986.1	ILMN_1354857	0002120139	S	2678	CAGCAGTCACACAAGGCACAGCACCCAGCACAGCCTGAATGCGGACCAAA				5q22	PREDICTED: Rattus norvegicus glucosidase beta 2 (Gba2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence ISS]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence ISS]	Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence ISS]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence IEA]; Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine [goid 4348] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650254-S	ILMN_264745	DHX57	XM_001062787.1	XM_001062787.1		366532	109478936	XM_001062787.1	Dhx57	XP_001062787.1	ILMN_1373580	0005550204	S	4027	TGGCGGAGGCCAAGTGAGTGTGCAGCTTCAAAGAGGGGCATTCGTCGTCT				6q11	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 (Dhx57), mRNA.			Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19173791-S	ILMN_275694	CHRNA2	NM_133420.1	NM_133420.1		170945	19173791	NM_133420.1	Chrna2	NP_596911.1	ILMN_1356988	0004730577	S	1595	CCTGAGACCAAGACTCCATCCCAGGCTAGCGAGATTCTGCTGTCACCTCA	15	+	45585610-45585659	15p12	Rattus norvegicus cholinergic receptor, nicotinic, alpha 2 (neuronal) (Chrna2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]	 [goid 4889] [evidence IEA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]	ACHR	ACHR
Rattus norvegicus	RefSeq	GI_62665920-S	ILMN_276444	ZFP365	NM_001025145.1	NM_001025145.1		499425	68341936	NM_001025145.1	Zfp365	NP_001020316.1	ILMN_1364903	0003710091	S	1241	CCATTTGAAGGGGAGAAGCTACCTGAAGAAAGCCAAGGATGAGCGAGCCG	20	+	21513394-21513443	20p11	Rattus norvegicus zinc finger protein 365 (Zfp365), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644790-S	ILMN_49106	ABO_PREDICTED	XM_215986.4	XM_215986.4		296504	109467933	XM_215986.4	Abo_predicted	XP_215986.3	ILMN_1374268	0000510039	S	1841	GACTCTGTTACATAGTTAACTGAGGGCTGGTGCATCCTCCCTCGGGCTTA	3	+	5596609-5596658	3p12	PREDICTED: Rattus norvegicus ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (predicted) (Abo_predicted), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-N-acetyl-alpha-D-galactosaminyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose [goid 4380] [evidence ISS]; Catalysis of the reaction: UDP-galactose + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-alpha-D-galactosyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose [goid 4381] [evidence ISS]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647136-S	ILMN_268562	FAM131B	NM_001025046.1	NM_001025046.1		500102	68163520	NM_001025046.1	Fam131b	NP_001020217.2	ILMN_1358522	0003850358	S	1393	CCAAGAACTGAGACCCAGGCAATTAGGTGGCATGGTGGTGGGAGATGAGC	4	-	70085080-70085129	4q23	Rattus norvegicus family with sequence similarity 131, member B (Fam131b), mRNA.					
Rattus norvegicus	RefSeq	GI_62718008-S	ILMN_274838	LOC691762	XM_001079546.1	XM_001079546.1		691762	109513997	XM_001079546.1	LOC691762	XP_001079546.1	ILMN_1354120	0003140435	S	533	TCAACGGCCAGACCCAGCATCATCTGGTCTCAGAAAGTGCAAGAGAGCTG	Un|NW_047990.1	-	506390-506414:507134-507158		PREDICTED: Rattus norvegicus hypothetical protein LOC691762 (LOC691762), mRNA.					
Rattus norvegicus	RefSeq	GI_62641611-S	ILMN_271221	IRF7	NM_001033691.1	NM_001033691.1		293624	76096317	NM_001033691.1	Irf7	NP_001028863.1	ILMN_1352469	0004850408	S	1637	ACACATCTGGAAGGCGTGCAGCGTGAGGGTGTGTCCTCTCTGGACAGCAG	1	-	201456961-201457010	1q41	Rattus norvegicus interferon regulatory factor 7 (Irf7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any type I interferon. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families [goid 45351] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC125013	MGC125013
Rattus norvegicus	RefSeq	GI_40538854-S	ILMN_283965	LEPROT	NM_020099.2	NM_020099.2		56766	40538854	NM_020099.2	Leprot	NP_064484.1	ILMN_1364359	0005570358	S	1660	CAGAGCACTCTCCTTTGAGGCTTGTGGTCAGAGGAATGGACACACCAGGC	5	+	122327634-122327683	5q33	Rattus norvegicus leptin receptor overlapping transcript (Leprot), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ob-Rgrp; Obrgrp	Ob-Rgrp; Obrgrp
Rattus norvegicus	RefSeq	GI_19424221-S	ILMN_58449	HDGFL1	NM_133549.2	NM_133549.2		171074	76880466	NM_133549.2	Hdgfl1	NP_598233.2	ILMN_1371200	0000060056	S	1195	GTGGGAGATAAAGAGCAGGGACAACATTCAAGGGTCTGGGAGGGGCAGTC	17	+	45147677-45147726	17p11	Rattus norvegicus hepatoma derived growth factor-like 1 (Hdgfl1), mRNA.				Hdgfrp1	Hdgfrp1
Rattus norvegicus	RefSeq	GI_62662891-S	ILMN_289479	AGPAT5_PREDICTED	XM_001074443.1	XM_001074443.1		306582	109504444	XM_001074443.1	Agpat5_predicted	XP_001074443.1	ILMN_1370753	0002480315	S	1432	TGCAGTCACCGTCTCTTACCGATGGCCGCACATTGCATCACACTGTTTCC				16q12.5	PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) (predicted) (Agpat5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27665133-S	ILMN_285912	RGD1559821_PREDICTED	XR_009247.1	XR_009247.1		304447	109497285	XR_009247.1	RGD1559821_predicted		ILMN_1348845	0001740040	S	348	CGCTGTCCTGGGTGCTGAAATCCGTCATATCCTAGTCACGCTGGGCGAGA				12q14	PREDICTED: Rattus norvegicus similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) (RGD1559821_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665945-S	ILMN_50743	LOC365566	XM_574750.1	XM_574750.1		365566	62665945	XM_574750.1	LOC365566	XP_574750.1	ILMN_1358480	0006020632	S	587	GAAAAAGTTGGACAAGAAGCGAGCACTGAGGCGACTGTAGTGGGCTCTCT					PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2S (LOC365566), mRNA.					
Rattus norvegicus	RefSeq	GI_62667429-S	ILMN_268856	RGD1563270_PREDICTED	XM_217535.3	XM_217535.3		302172	62667429	XM_217535.3	RGD1563270_predicted	XP_217535.3	ILMN_1351244	0001340064	S	713	CACGGCAGAGCCACAGCCTGAAAGCCCTTAAGCAGGAAAATGACAAGTTC	X	+	140652399-140652448	Xq36	PREDICTED: Rattus norvegicus similar to synaptonemal complex protein 3 (predicted) (RGD1563270_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717880-S	ILMN_53561	LOC363316	XM_343656.2	XM_343656.2		363316	62717880	XM_343656.2	LOC363316	XP_343657.2	ILMN_1349926	0007040484	S	1317	CCAACAAGATAGATAAACCCTTAGCCAGACTAACGCGAGGACACAGAGAG					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC363316), mRNA.					
Rattus norvegicus	RefSeq	GI_51948449-S	ILMN_276452	DCTN2	NM_001004239.1	NM_001004239.1		299850	51948449	NM_001004239.1	Dctn2	NP_001004239.1	ILMN_1374374	0002640132	S	1526	GCCAGCTCTTGTCCAGTAAGTGCTTGCCTGCTGTGGGAGAGGACTGGATC	7	+	67239031-67239080	7q22	Rattus norvegicus dynactin 2 (Dctn2), mRNA.	A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence TAS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence ISS]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence IDA]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle [goid 7052] [evidence IDA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence ISS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IDA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93976	MGC93976
Rattus norvegicus	RefSeq	GI_6981557-S	ILMN_283430	SLC9A1	NM_012652.1	NM_012652.1		24782	6981557	NM_012652.1	Slc9a1	NP_036784.1	ILMN_1363067	0005550341	S	4445	TTGCCATGCAAGGTGACATCGACAACCATGTACAAAGCCACCGCAGCCGC	5	-	151680779-151680828	5q36	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 1 (Slc9a1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IPI]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence TAS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]	Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]	Nhe1	Nhe1
Rattus norvegicus	RefSeq	GI_62662603-S	ILMN_272151	RGD1308517	NM_001037181.1	NM_001037181.1		290722	81295372	NM_001037181.1	RGD1308517	NP_001032258.1	ILMN_1361913	0000780070	S	1154	GGTGTGGATGTTGTGCCCTATGATAAAAAATACAGTGTTGAGGGGCCGGC	16	+	37151007-37151028:37158222-37158249	16p11	Rattus norvegicus similar to KIAA1712 protein (RGD1308517), mRNA.				MGC125247	MGC125247
Rattus norvegicus	RefSeq	GI_62651943-S	ILMN_67415	RGD1310212_PREDICTED	XM_234842.4	XM_234842.4		299557	109480317	XM_234842.4	RGD1310212_predicted	XP_234842.4	ILMN_1352658	0004230204	S	2212	CCAGCTCCTTCCACCCTTCATACACTTTGGAGTGGGGGACAAGACCAAGG	7	-	13775194-13775243	7q11	PREDICTED: Rattus norvegicus similar to KIAA1111-like protein (predicted) (RGD1310212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657315-S	ILMN_57233	LOC498023	XM_573220.1	XM_573220.1		498023	62657315	XM_573220.1	LOC498023	XP_573220.1	ILMN_1349046	0006180400	S	764	TGACACGGTTCCTCATCATATGATGATGCAGTCTGGACACAAAGGAACTG				10q32.2	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (LOC498023), mRNA.					
Rattus norvegicus	RefSeq	GI_62653504-S	ILMN_284128	LOC500974	XR_009636.1	XR_009636.1		500974	109484507	XR_009636.1	LOC500974		ILMN_1365562	0006420242	S	2002	CACATCCAGATGCTGCCGTTGGACTCTTCCTGGGAGCTCTTTCCACGATG				8q21	PREDICTED: Rattus norvegicus similar to CDNA sequence BC024479 (LOC500974), misc RNA.					
Rattus norvegicus	RefSeq	GI_62651596-S	ILMN_49606	LOC503105	XM_578625.1	XM_578625.1		503105	62651596	XM_578625.1	LOC503105	XP_578625.1	ILMN_1355832	0006350041	S	271	TCAAAGAGGCGTCAACATGTCCGCTTGCGAAGGCAGAAGACAGTGTGGTG					PREDICTED: Rattus norvegicus similar to serine C-palmitoyltransferase (LOC503105), mRNA.					
Rattus norvegicus	RefSeq	GI_57164104-S	ILMN_284894	CMAS	NM_001009419.1	NM_001009419.1		312826	57164104	NM_001009419.1	Cmas	NP_001009419.1	ILMN_2040694	0005900554	S	1308	TGGTTGTAGTGTGGGGGAAGGGAGAACGAAGCCTTTTCCAGCCACTTTGC	4	+	180668859-180668908	4q44	Rattus norvegicus cytidine monophosphate N-acetylneuraminic acid synthetase (Cmas), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria [goid 9103] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria [goid 9103] [evidence IEA]	Catalysis of the reaction: CTP + N-acylneuraminate = diphosphate + CMP-N-acylneuraminate [goid 8781] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105806	MGC105806
Rattus norvegicus	RefSeq	GI_46485434-S	ILMN_277438	PSBPC2	NM_207593.1	NM_207593.1		293731	46485434	NM_207593.1	Psbpc2	NP_997476.1	ILMN_1360459	0005340114	S	66	GGTTGTTTGTTGCTATGAAGCTAATGGCCAGACCTTGGCGGGCGTCTGCC	1	+	212121831-212121850:212123485-212123514	1q43	Rattus norvegicus prostatic steroid-binding protein C2 (Psbpc2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence TAS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]	Psbp2	Psbp2
Rattus norvegicus	RefSeq	GI_34863158-S	ILMN_280209	RGD1563029_PREDICTED	XR_007429.1	XR_007429.1		293952	109463894	XR_007429.1	RGD1563029_predicted		ILMN_1355331	0006520176	S	381	CCGCTATAATCTGGACTCGAAGTTACGGGTGCCTGAAGCCCTGGAAGGAG				1q54	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110007C05 (predicted) (RGD1563029_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650402-I	ILMN_57847	ZFP513_PREDICTED	XM_575994.1	XM_575994.1		313913	62650402	XM_575994.1	Zfp513_predicted	XP_575994.1	ILMN_1375604	0002120059	S	172	CCCTGGTTCGAATTATGGGAACGGCTTGTGAGGGAGATTCCACAAGCACC				6q14	PREDICTED: Rattus norvegicus zinc finger protein 513 (predicted) (Zfp513_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667076-S	ILMN_65111	LOC302402	XM_228571.3	XM_228571.3		302402	62667076	XM_228571.3	LOC302402	XP_228571.2	ILMN_1369641	0002970593	S	11	TTCTGATTGGCTGGGGCAAGCAGTGGCCGCAGCGGGCTAAGCCGGTATTC					PREDICTED: Rattus norvegicus similar to hypoxia induced gene 1 (LOC302402), mRNA.					
Rattus norvegicus	RefSeq	GI_34854097-S	ILMN_63437	LOC502260	XM_577721.1	XM_577721.1		502260	62638722	XM_577721.1	LOC502260	XP_577721.1	ILMN_1370533	0006100114	S	1950	CAGCACAGAGGTTTTAAGGGGTGGACCAGGAATATAGCAAATGCCCTGAT				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502260), mRNA.					
Rattus norvegicus	RefSeq	GI_62638722-S	ILMN_63437	LOC502260	XM_577721.1	XM_577721.1		502260	62638722	XM_577721.1	LOC502260	XP_577721.1	ILMN_1371673	0001980167	S	272	AGGGCGAGTCTGTCCCCATCAGTGGCTGGCTAAGAGGATTCAAGGGATGG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502260), mRNA.					
Rattus norvegicus	RefSeq	GI_62653218-S	ILMN_288296	YAP1	NM_001034002.2	NM_001034002.2		363014	85540437	NM_001034002.2	Yap1	NP_001029174.2	ILMN_1370771	0001090301	S	1318	GGACCTTGGCACACTGGAAGGAGATGCAATGAACATAGAAGGGGAGGAGC	8	-	4780948-4780997	8q11	Rattus norvegicus yes-associated protein 1 (Yap1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Yap	Yap
Rattus norvegicus	RefSeq	GI_16758235-S	ILMN_296182	PIK3CB	NM_053481.1	NM_053481.1		85243	16758235	NM_053481.1	Pik3cb	NP_445933.1	ILMN_1368644	0000050397	S	3139	GAGGCACTCAGGGAAAGCTGGACCACTAAGGTGAACTGGATGGCTCATAC	8	-	103886706-103886755	8q31	Rattus norvegicus phosphoinositide-3-kinase, catalytic, beta polypeptide (Pik3cb), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; The first few specialized divisions of an activated animal egg [goid 40016] [evidence ISS]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IDA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Catalysis of the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring to generate the 3-phosphoinositides: phosphatidylinositol-3-phosphate [PI(3)P], phosphatidylinositol-3,4-bisphosphate [PI(3,4)P2] and phosphatidylinositol-3,4,5-trisphosphate [PI(3,4,5)P3] [goid 35004] [evidence NAS]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate = ADP + 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate [goid 46934] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661489-A	ILMN_277807	TM9SF1	NM_001012155.1	NM_001012155.1		361043	58865881	NM_001012155.1	Tm9sf1	NP_001012155.1	ILMN_1376407	0003390273	S	1983	CTCGGCGGTCCAACATGTCAGGGGCAGTACAGACAGTAGAGTTCTTTGGC	15	-	33771878-33771927	15p13	Rattus norvegicus transmembrane 9 superfamily member 1 (Tm9sf1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62643474-S	ILMN_266890	RGD1560498_PREDICTED	XR_007776.1	XR_007776.1		499619	109466688	XR_007776.1	RGD1560498_predicted		ILMN_1357988	0004150408	S	943	GGGGCTGGATCTCTCTCCACAATAGGGAAGCTGCTCACAGAAGGGTTTAG				2q31	PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta) (predicted) (RGD1560498_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138730-S	ILMN_58247	ZNF183	NM_001004445.1	NM_001004445.1		314313	52138730	NM_001004445.1	Znf183	NP_001004445.1	ILMN_1374129	0000770113	S	1060	TACCGAAAAGCGGAGGGTGGTACTTCTAACACCTCAGAAGACCCCGATGG				6q31	Rattus norvegicus zinc finger protein 183 (RING finger, C3HC4 type) (Znf183), mRNA.					
Rattus norvegicus	RefSeq	GI_62645836-S	ILMN_289674	LOC499886	NM_001024312.1	NM_001024312.1		499886	66730297	NM_001024312.1	LOC499886	NP_001019483.1	ILMN_1366943	0001340685	S	1737	AGCTGAAGAGGGAAGATGGACTCACAGAGGACAAGGAGGGCCAATCCCGG	3	+	116199813-116199862	3q36	Rattus norvegicus similar to hypothetical protein 4933411G11 (LOC499886), mRNA.					
Rattus norvegicus	RefSeq	GI_62652707-S	ILMN_283911	C1QTNF6	NM_001034932.1	NM_001034932.1		315114	77917557	NM_001034932.1	C1qtnf6	NP_001030104.1	ILMN_1366657	0003710377	S	496	TCCTCTCACTGCTGTTCGACAGGGTCTTCGTGAACACGGACGGCCACTTC	7	-	116481557-116481606	7q34	Rattus norvegicus C1q and tumor necrosis factor related protein 6 (C1qtnf6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			MGC124704	MGC124704
Rattus norvegicus	RefSeq	GI_62644023-S	ILMN_55079	LOC502580	XM_578066.1	XM_578066.1		502580	62644023	XM_578066.1	LOC502580	XP_578066.1	ILMN_1361513	0000670193	S	453	AGCACTGTGGCTGCTTGTTACTTCACCTCCGGGGTTCTTACTGGAGCCTC					PREDICTED: Rattus norvegicus similar to chromosome 1 open reading frame 51 (LOC502580), mRNA.					
Rattus norvegicus	RefSeq	GI_34855046-S	ILMN_65588	IMPDH1_PREDICTED	XM_342650.3	XM_342650.3		362329	109471840	XM_342650.3	Impdh1_predicted	XP_342651.3	ILMN_2039517	0003990681	S	2489	GAGGGCCTGATGATGACCGCCTGCCCTTCATTCCTGACTCACCATTGTCC	4	-	56075360-56075409	4q22	PREDICTED: Rattus norvegicus IMP (inosine monophosphate) dehydrogenase 1 (predicted) (Impdh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646936-S	ILMN_65588	IMPDH1_PREDICTED	XM_342650.3	XM_342650.3		362329	109471840	XM_342650.3	Impdh1_predicted	XP_342651.3	ILMN_1365012	0006650273	S	2570	GCTGCAGCTGAAGGCTTTAACTTTGCACACTTTGGGGTCACAATCGTGTC	4	-	56075279-56075328	4q22	PREDICTED: Rattus norvegicus IMP (inosine monophosphate) dehydrogenase 1 (predicted) (Impdh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645556-S	ILMN_277805	RGD1309107	XM_001074602.1	XM_001074602.1		296060	109470428	XM_001074602.1	RGD1309107	XP_001074602.1	ILMN_1353170	0002350121	S	3762	GGCCTCAGTGGTGTTGGAACCCTTACTCTTGTTGGGACAGAGGGATTTTG				3q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530401L14 gene (RGD1309107), mRNA.					
Rattus norvegicus	RefSeq	GI_62646767-S	ILMN_57577	CLDN12_PREDICTED	XM_231402.4	XM_231402.4		312054	109471685	XM_231402.4	Cldn12_predicted	XP_231402.4	ILMN_1365458	0005700026	S	1461	CACGGGTGAGCCTGCAGTGCATTATGTTCAAGGAAGCCAGGCAAGCACAG	4	+	25179646-25179695	4q12	PREDICTED: Rattus norvegicus claudin 12 (predicted) (Cldn12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643767-S	ILMN_63902	ASH1L_PREDICTED	XM_227409.4	XM_227409.4		310638	109465071	XM_227409.4	Ash1l_predicted	XP_227409.4	ILMN_1369891	0002690044	S	8889	AGGCACAGCCAGAGGGAACGGCTCAACCAGATCCTGCTCAACCTCCTGGA	2	+	181148810-181148859	2q34	PREDICTED: Rattus norvegicus ash1 (absent, small, or homeotic)-like (Drosophila) (predicted) (Ash1l_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.9547	ILMN_161194	RN.9547	Rn.9547		Rn.9547		82517147	DV723824			ILMN_1530534	0006180139	S	351	AAATCAAGTGTTACTCTCATGTTTCTCACCCTATCATCTCATTTTTTCCT					RVL15748 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62641264-S	ILMN_275003	LOC361646	XM_001079791.1	XM_001079791.1		361646	109462851	XM_001079791.1	LOC361646	XP_001079791.1	ILMN_1358798	0006450139	S	5813	TCCCAGGAGAGCCATCAAACCAACTCTAGGCGAATCAGGGCCACTCCTTT				1q36	PREDICTED: Rattus norvegicus similar to K04F10.2 (LOC361646), mRNA.					
Rattus norvegicus	RefSeq	GI_62647830-S	ILMN_274416	HDAC11_PREDICTED	XM_001073226.1	XM_001073226.1		297453	109473867	XM_001073226.1	Hdac11_predicted	XP_001073226.1	ILMN_1358077	0005910463	S	2522	ACAGGCTCCAGGTTGTTGCTGTGTGTTCTGAGGTAGACAGACCTGCCTCC				4q34	PREDICTED: Rattus norvegicus histone deacetylase 11 (predicted) (Hdac11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576256-S	ILMN_285861	OLR1307	NM_001000519.1	NM_001000519.1		315573	47576256	NM_001000519.1	Olr1307	NP_001000519.1	ILMN_1373459	0000070711	S	416	GTGCCATCCTGGCCACAGGGACATCATTTTTTGGCTGCATTCAGGCCACT	8	-	42437706-42437755	8q22	Rattus norvegicus olfactory receptor 1307 (Olr1307), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr18	tpcr18
Rattus norvegicus	Unigene	Rn.13357	ILMN_161605	RN.13357	Rn.13357		Rn.13357		8505502	BE113397			ILMN_1530559	0003130717	S	105	TGAACTCATGGCTACAATCTTACAGAGAACATGGGAACAAAAAATATAAA					UI-R-BJ1-awe-h-04-0-UI.s1 UI-R-BJ1 Rattus norvegicus cDNA clone UI-R-BJ1-awe-h-04-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_11968063-S	ILMN_268184	PVALB	NM_022499.1	NM_022499.1		25269	11968063	NM_022499.1	Pvalb	NP_071944.1	ILMN_1367420	0002030541	S	677	GTGAGAGAGAGCGAAGGACCACGCCCTGATATTTCCTGCCTGCTTGGTAC	7	-	116114905-116114954	7q34	Rattus norvegicus parvalbumin (Pvalb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	PALB1; Pva	PALB1; Pva
Rattus norvegicus	RefSeq	GI_47576550-S	ILMN_270953	OLR163	NM_001000171.1	NM_001000171.1		293309	47576550	NM_001000171.1	Olr163	NP_001000171.1	ILMN_1374401	0004540731	S	206	CTCTGACAGATCTTGTCATATGCTCCAGTACAATCCCTAAAGCCCTCTGC	1	+	162349517-162349566	1q33	Rattus norvegicus olfactory receptor 163 (Olr163), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr163; ratchr1-162444789-162445754_ORF	Olr163; ratchr1-162444789-162445754_ORF
Rattus norvegicus	RefSeq	GI_62642158-S	ILMN_51616	TRPD52L3_PREDICTED	XM_219798.4	XM_219798.4		293894	109460024	XM_219798.4	Trpd52l3_predicted	XP_219798.4	ILMN_1368503	0001090458	S	547	AAGTCAAGAGTCGCGGGTGGCAGAGAGCTCGGCAGTGGCCTTCTTCCTTC	1	+	233744275-233744324	1q52	PREDICTED: Rattus norvegicus tumor protein D52-like 3 (predicted) (Trpd52l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079224-S	ILMN_283080	PDZD7_PREDICTED	XM_001057829.1	XM_001057829.1		293996	109463929	XM_001057829.1	Pdzd7_predicted	XP_001057829.1	ILMN_1367435	0001170176	S	2232	GGAAAGGGGGCTAACCTGTCCCCACATTCTACCTGCCTGAAGCCAGAGAG				1q54	PREDICTED: Rattus norvegicus PDZ domain containing 7 (predicted) (Pdzd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642382-S	ILMN_283080	PDZD7_PREDICTED	XM_001057829.1	XM_001057829.1		293996	109463929	XM_001057829.1	Pdzd7_predicted	XP_001057829.1	ILMN_1362205	0000940279	S	1173	CCAGGGCCTTGCTGCCGACAGTTCTTCCGCCCATGGACCCATTGAAGATA				1q54	PREDICTED: Rattus norvegicus PDZ domain containing 7 (predicted) (Pdzd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577840-S	ILMN_291374	OLR1201	NM_001000818.1	NM_001000818.1		405106	47577840	NM_001000818.1	Olr1201	NP_001000818.1	ILMN_1363905	0004210333	S	761	GGGCATTCATGTATCTCAAACCTTCTTCCCTTTTGCCTATGAACCAGGGG	8	+	39287237-39287286	8q21	Rattus norvegicus olfactory receptor 1201 (Olr1201), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1201	Olr1201
Rattus norvegicus	RefSeq	GI_62657636-S	ILMN_60094	IFNGR2_PREDICTED	XM_340967.3	XM_340967.3		360697	109492935	XM_340967.3	Ifngr2_predicted	XP_340968.1	ILMN_1356831	0003520037	S	1402	CTGGTTCCTCGGCTTCACTCTGGAAAATGAGTTGTCCCAGGCATCCCAGC	11	+	31525788-31525837	11q11	PREDICTED: Rattus norvegicus interferon gamma receptor 2 (predicted) (Ifngr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645995-S	ILMN_287273	RGD1562321_PREDICTED	XM_001057286.1	XM_001057286.1		311508	109470974	XM_001057286.1	RGD1562321_predicted	XP_001057286.1	ILMN_1349321	0003840408	S	1553	GCGCTTAAGACCCACCTGAGAGTTCATACAGGGGAAAGACCTTTTGTCTG				3q41	PREDICTED: Rattus norvegicus similar to zinc finger protein 336 (predicted) (RGD1562321_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641128-S	ILMN_48178	IPO7_PREDICTED	XM_219265.4	XM_219265.4		308939	109459232	XM_219265.4	Ipo7_predicted	XP_219265.2	ILMN_1349724	0000130577	S	4473	TGCAGAAATAAGCCAGCAACAACAGGGTAGCGGGGTGGGCTTCTCCCCTC	1	+	167697392-167697441	1q33	PREDICTED: Rattus norvegicus importin 7 (predicted) (Ipo7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34577115-S	ILMN_293988	GPX2	NM_183403.1	NM_183403.1		29326	34577115	NM_183403.1	Gpx2	NP_899653.1	ILMN_1368854	0006980484	S	858	AGTCCACTGGGGGCTCTAAGTCTGGGGTAGGTGCTAGGCCTTCTTCACAG	6	-	99372520-99372569	6q24	Rattus norvegicus glutathione peroxidase 2 (Gpx2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2862] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism [goid 9609] [evidence ISS]; An interaction between two organisms living together in more or less intimate association. The term symbiont is used for the smaller (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism [goid 51702] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	GPX-GI	GPX-GI
Rattus norvegicus	RefSeq	GI_34935126-S	ILMN_279442	XPA_PREDICTED	XM_001071899.1	XM_001071899.1		298074	109476438	XM_001071899.1	Xpa_predicted	XP_001071899.1	ILMN_1355648	0003610458	S	1336	GCGGGCTCTTGAAGTTTGGGGTAGCCAGGAAGCTCTGGAAGATGCAAAGG				5q22	PREDICTED: Rattus norvegicus xeroderma pigmentosum, complementation group A (predicted) (Xpa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576964-S	ILMN_300356	OLR25	NM_001000692.1	NM_001000692.1		404897	47576964	NM_001000692.1	Olr25	NP_001000692.1	ILMN_1362926	0000670575	S	595	TTGACTGCCTTTGGGCTCAGTGGTACCTGCTTTGCCTTCATTGCCATTTC	1	+	142740706-142740755	1q32	Rattus norvegicus olfactory receptor 25 (Olr25), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr25	Olr25
Rattus norvegicus	Unigene	Rn.17029	ILMN_160859	RN.17029	Rn.17029		Rn.17029		57597676	CX570645			ILMN_1530398	0003130594	S	281	TTTAGAGTTTAGTCAATTTCTCAATAGGTCAAAAAGCAAAAGATGCCATG					RVL1816 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62644731-S	ILMN_273595	RGD1306215_PREDICTED	XM_001073540.1	XM_001073540.1		296565	109469434	XM_001073540.1	RGD1306215_predicted	XP_001073540.1	ILMN_1368078	0001940563	S	2118	CCATTAGCCCCAGGAAGAGCACCCAGCCAGCAGGCACTCAGTTCTTACCA				3p13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC36831 (predicted) (RGD1306215_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666317	ILMN_286892	QRSL1	XM_001067712.1	XM_001067712.1		309911	109510277	XM_001067712.1	Qrsl1	XP_001067712.1	ILMN_1650024	0006220390	S	1845	CCAAGTTCACCGCCAACCCCGTCTGTCCTGGGGATCACGTTCTCAAATCC				20q13	PREDICTED: Rattus norvegicus glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 (Qrsl1), mRNA.		The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction [goid 16884] [evidence IEA]; Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction [goid 16884] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657922-S	ILMN_61359	LOC303919	XM_221433.3	XM_221433.3		303919	62657922	XM_221433.3	LOC303919	XP_221433.3	ILMN_1362102	0007100706	S	437	AGGCAACCAGCTGCAGAGCATCCCCGCCGAGATCGAGAACTTGCAGAGGT				11q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330018J07 gene (predicted) (LOC303919), mRNA.					
Rattus norvegicus	RefSeq	GI_19705558-S	ILMN_282492	HSPBAP1	NM_134419.1	NM_134419.1		171460	19705558	NM_134419.1	Hspbap1	NP_599246.1	ILMN_1351640	0005360551	S	1213	TCCTGTGACACCAGCATCGGAAGAGAGAGGAGGCGCACTGGAAGGAGACA	11	-	66774443-66774492	11q22	Rattus norvegicus Hspb associated protein 1 (Hspbap1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			Pass1	Pass1
Rattus norvegicus	RefSeq	GI_7106239-S	ILMN_280246	AKR7A3	NM_013215.1	NM_013215.1		26760	7106239	NM_013215.1	Akr7a3	NP_037347.1	ILMN_1371516	0002370315	S	1046	TTCCGCTAAGATACATCTGCCTTGGGGATGGCGCAGCTTACTGCCTGCCC	5	+	158147303-158147305:158147306-158147352	5q36	Rattus norvegicus aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) (Akr7a3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]; The chemical reactions and pathways involving aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450 [goid 46222] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450 [goid 46223] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IDA]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence IMP]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Afar; Akr7a1	Afar; Akr7a1
Rattus norvegicus	RefSeq	GI_6978446-S	ILMN_58261	ADCY6	NM_012821.2	NM_012821.2		25289	77020245	NM_012821.2	Adcy6	NP_036953.2	ILMN_1362372	0001690088	S	4130	CTGGCCTGTGTCAGCAGCATTTGTCTTGGGCACTCCCAGTACCAGCCAAG	7	-	137341647-137341696	7q36	Rattus norvegicus adenylate cyclase 6 (Adcy6), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IDA]; The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IDA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]	ADCYB; ACVI	ADCYB; ACVI
Rattus norvegicus	RefSeq	GI_18543366-S	ILMN_291075	FGF15	NM_130753.1	NM_130753.1		170582	18543366	NM_130753.1	Fgf15	NP_570109.1	ILMN_1358250	0002970725	S	335	CCGACGGCAAGATATACGGGCTGATTCGCTACTCGGAGGAAGACTGTACC	1	+	205325406-205325428:205327879-205327905	1q42	Rattus norvegicus fibroblast growth factor 15 (Fgf15), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647658-S	ILMN_54001	LOC500223	XM_575574.1	XM_575574.1		500223	62647658	XM_575574.1	LOC500223	XP_575574.1	ILMN_1371153	0005130170	S	1301	CCTGGAGCTGGGGCTCACTACAACCCTCTGCAAGTTGGGAGCCATCTGTA				4q34	PREDICTED: Rattus norvegicus similar to D6MM5e protein (LOC500223), mRNA.					
Rattus norvegicus	RefSeq	GI_62641879-A	ILMN_293734	GPR44	NM_001012070.1	NM_001012070.1		309212	58865713	NM_001012070.1	Gpr44	NP_001012070.1	ILMN_1376314	0002760725	S	956	TGTCCCGACATGTTGCACAAGCTGAGGCGCTCGCTACTCACGGTGCTTGA	1	+	213438157-213438206	1q43	Rattus norvegicus G protein-coupled receptor 44 (Gpr44), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence ISS]	Combining with prostaglandin J (PGJ(2)), a metabolite of prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 1785] [evidence IEA]; Combining with prostaglandin J (PGJ(2)), a metabolite of prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 1785] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; Combining with prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 4956] [evidence IEA]; Combining with prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 4956] [evidence ISS]; Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity [goid 4958] [evidence IEA]; Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity [goid 4958] [evidence ISS]; Combining with an N-formyl peptide to initiate a change in cell activity [goid 4982] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664479-S	ILMN_60024	SLC27A6_PREDICTED	XM_225919.4	XM_225919.4		291582	109506659	XM_225919.4	Slc27a6_predicted	XP_225919.3	ILMN_1364102	0002450673	S	1635	GGTGACATCACTACCAGCTTATGCCTGCCCACGGTTTCTAAGAATTCAGG	18	+	54408303-54408351:54411601-54411601	18q12.1	PREDICTED: Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 6 (predicted) (Slc27a6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651376-S	ILMN_60530	LOC500744	XM_576123.1	XM_576123.1		500744	62651376	XM_576123.1	LOC500744	XP_576123.1	ILMN_1367304	0001170348	S	230	CTGGAGTGGATGGGATATATAAACAGTGCAGGCAGCACTAACTACAACCC				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin gamma 1 chain (LOC500744), mRNA.					
Rattus norvegicus	RefSeq	GI_47577060-S	ILMN_273479	OLR773	NM_001000373.1	NM_001000373.1		296026	47577060	NM_001000373.1	Olr773	NP_001000373.1	ILMN_1349084	0006370097	S	596	TGTATGCTGACTGTGGGGTTGTAGGTGTAACCTGTTTTATTCTGTTGCTC	3	+	97325219-97325268	3q34	Rattus norvegicus olfactory receptor 773 (Olr773), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr773; ratchr3-97221052-97221990_ORF	Olr773; ratchr3-97221052-97221990_ORF
Rattus norvegicus	RefSeq	GI_62661888-S	ILMN_66447	LOC501988	XM_577416.1	XM_577416.1		501988	62661888	XM_577416.1	LOC501988	XP_577416.1	ILMN_1354831	0004280504	S	628	GCAGCCTGTACACAAACATTCAGCTGGGAGGAAGCAATGGAGACTCGGTG					PREDICTED: Rattus norvegicus similar to TRAV6-5 (LOC501988), mRNA.					
Rattus norvegicus	RefSeq	GI_62655161-S	ILMN_69790	CRYGB_MAPPED	XM_217421.4	XM_217421.4		301468	109486211	XM_217421.4	Crygb_mapped	XP_217421.4	ILMN_1362063	0001170017	S	478	CCGGGAGAGTACAGGAGATATCTTGACTGGGGGGCTGCAAACGCCAAAGT	9	-	63731004-63731053	9q32	PREDICTED: Rattus norvegicus crystallin, gamma B (mapped) (Crygb_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62640886-S	ILMN_59267	LOC499201	XM_579934.1	XM_579934.1		499201	62640886	XM_579934.1	LOC499201	XP_579934.1	ILMN_1356608	0002480176	S	343	CGGGATGACGTGGCTTTGGAGGGCATCTCTGGGCGAGTATCTCTCTGAGT					PREDICTED: Rattus norvegicus hypothetical gene supported by BC061525 (LOC499201), mRNA.					
Rattus norvegicus	RefSeq	GI_62658011-S	ILMN_280135	RGD1562500_PREDICTED	XM_001073075.1	XM_001073075.1		498096	109494524	XM_001073075.1	RGD1562500_predicted	XP_001073075.1	ILMN_1370896	0004920369	S	514	GCTGTTCAGATCATCGAGAAGGGGAAAGCAGCAAGGACCCCTGAAACCTC				11q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310010M20 (predicted) (RGD1562500_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506590-S	ILMN_52686	FDFT1	NM_019238.2	NM_019238.2		29580	82880669	NM_019238.2	Fdft1	NP_062111.1	ILMN_1358542	0000610056	S	1146	GCAAGGCCAAGCAGCTCATCTCCAACATCAGGACGCAGAGCCTTCCCAAT	15	-	42427299-42427348	15p12	Rattus norvegicus farnesyl diphosphate farnesyl transferase 1 (Fdft1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence TAS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IMP]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation [goid 45338] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence IDA]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence IEA]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence IMP]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93486	MGC93486
Rattus norvegicus	RefSeq	GI_62662202-S	ILMN_295522	GALNTL2_PREDICTED	XM_001061731.1	XM_001061731.1		306268	109503800	XM_001061731.1	Galntl2_predicted	XP_001061731.1	ILMN_1374327	0006350358	S	1950	CTGGGATGCCCCATGACACTGGCTCCTTGCAGTAACAACCGGCAGCAACA				16p16	PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 (predicted) (Galntl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55926138-S	ILMN_290541	PPP2R1A	NM_057140.1	NM_057140.1		117281	55926138	NM_057140.1	Ppp2r1a	NP_476481.1	ILMN_1371662	0004730195	S	1961	GGCTGGGGCAGTACAAGTTGGGGCAGGACAGCAGCCTGAAAAGAAGGTCT	1	+	58461215-58461264	1q12	Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform (Ppp2r1a), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	PR65; MGC95083	PR65; MGC95083
Rattus norvegicus	RefSeq	GI_62644733-S	ILMN_283920	LOC687251	XM_001077710.1	XM_001077710.1		687251	109469554	XM_001077710.1	LOC687251	XP_001077710.1	ILMN_1351442	0000780215	S	206	AGCTGAGAGACAACAGTGAGTTTCAGGTGACCAACTCCATGACTCGGGGC					PREDICTED: Rattus norvegicus similar to lipocalin 12 (LOC687251), mRNA.					
Rattus norvegicus	RefSeq	GI_62641906-S	ILMN_296335	OSBP_PREDICTED	XM_001075837.1	XM_001075837.1		365410	109463605	XM_001075837.1	Osbp_predicted	XP_001075837.1	ILMN_1361792	0006860452	S	2299	AGCACTGTGGTTTGAGCGGAAGAAGGACCCTGTCACCAAGGAGCTAACCC				1q43	PREDICTED: Rattus norvegicus oxysterol binding protein (predicted) (Osbp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657266-I	ILMN_54737	SLC16A6	XM_573214.1	XM_573214.1		303772	62657266	XM_573214.1	Slc16a6	XP_573214.1	ILMN_1375716	0004150576	S	58	CTGGCCCACGCCCTAAGGGGTTAAACCTTTTTTCTCCTGTTACGGAGCGG				10q32.1	PREDICTED: Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 6 (Slc16a6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653752-S	ILMN_268015	RGD1562602_PREDICTED	XM_001074703.1	XM_001074703.1		315713	109484800	XM_001074703.1	RGD1562602_predicted	XP_001074703.1	ILMN_1359403	0000870390	S	2568	CCGCAGCAACCGGCAAGAGGGCTTGAAGAAGTATGTCCACTATCTGAGCC				8q24	PREDICTED: Rattus norvegicus similar to promyelocytic leukemia (predicted) (RGD1562602_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638429-I	ILMN_49095	TRIP13_PREDICTED	XM_574293.1	XM_574293.1		292206	62638429	XM_574293.1	Trip13_predicted	XP_574293.1	ILMN_1375658	0000430369	S	1872	GCACCGGATGCTGTGGAATGGGTGAGAAAGACGTGCTCCTGTGATACAGA				1p11	PREDICTED: Rattus norvegicus thyroid hormone receptor interactor 13 (predicted) (Trip13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658537-S	ILMN_273823	RGD1311660_PREDICTED	XM_001074468.1	XM_001074468.1		288518	109496672	XM_001074468.1	RGD1311660_predicted	XP_001074468.1	ILMN_1368677	0000540082	S	2505	ACCGTGGTGTATGTACTGGCCTCAGGGAGCAGGAGAGGTGATTTTGATGC				12q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110007L15 (predicted) (RGD1311660_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640855-S	ILMN_57649	LOC502347	XM_577815.1	XM_577815.1		502347	62640855	XM_577815.1	LOC502347	XP_577815.1	ILMN_1357653	0003610136	S	844	GCCCTGCAGCGAGTGATCTGAACTGTGGAACCAGCTCTCCATCTTGTCCC					PREDICTED: Rattus norvegicus similar to RNA helicase GLH-2 (LOC502347), mRNA.					
Rattus norvegicus	RefSeq	GI_62655234-S	ILMN_51364	GLB1L_PREDICTED	XM_217443.3	XM_217443.3		301525	62655234	XM_217443.3	Glb1l_predicted	XP_217443.3	ILMN_1364521	0006200132	S	1771	GGACAATGCGGGGTCCACAACAGACCCTATACGTGCCAAGACCTCTGCTG					PREDICTED: Rattus norvegicus galactosidase, beta 1-like (predicted) (Glb1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394059-S	ILMN_271902	PSMA1	NM_017278.1	NM_017278.1		29668	8394059	NM_017278.1	Psma1	NP_058974.1	ILMN_1349689	0002760717	S	823	GCCTTCACAGGCTGCTGATGAACCTGCAGAAAAAGCTGATGAACCAATGG	1	-	172238064-172238113	1q34	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 1 (Psma1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653819-S	ILMN_271428	PUNC_PREDICTED	XM_001075191.1	XM_001075191.1		315759	109484844	XM_001075191.1	Punc_predicted	XP_001075191.1	ILMN_1355847	0001580110	S	1932	CTGGTATCCTGACCCTGAATGGAGTGAACCGAGGAGAAGGGGGCCAGCTA				8q24	PREDICTED: Rattus norvegicus putative neuronal cell adhesion molecule (predicted) (Punc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649249-S	ILMN_65327	LOC500503	XM_580076.1	XM_580076.1		500503	62649249	XM_580076.1	LOC500503	XP_580076.1	ILMN_1356729	0007050537	S	791	TCCCCGCTCGATGGTGGATTCATATCCTGTGCGGCCTCTAGGAAGCGCTA					PREDICTED: Rattus norvegicus LOC500503 (LOC500503), mRNA.					
Rattus norvegicus	RefSeq	GI_62657258-S	ILMN_262547	RGD1561210_PREDICTED	XM_001081590.1	XM_001081590.1		363690	109492116	XM_001081590.1	RGD1561210_predicted	XP_001081590.1	ILMN_1355900	0006940500	S	224	GTTCCCATTCAGAGACCCCTGCCTTTCCAGGAGGAGCTTTTAAGGTCACT				10q32.1	PREDICTED: Rattus norvegicus similar to Rpl7a protein (predicted) (RGD1561210_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078608-S	ILMN_279481	DYNC2LI1	NM_001013940.1	NM_001013940.1		298767	62078608	NM_001013940.1	Dync2li1	NP_001013962.1	ILMN_1352029	0006590338	S	1290	CTGAAGGCCATCCAGGACCCAGCCCGGGACCCACAGTATGCAGAAAGTGA	6	+	8018969-8019018	6q12	Rattus norvegicus dynein cytoplasmic 2 light intermediate chain 1 (Dync2li1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]	RGD1310286	RGD1310286
Rattus norvegicus	RefSeq	GI_62718814-S	ILMN_64270	LOC501486	XM_576892.1	XM_576892.1		501486	62718814	XM_576892.1	LOC501486	XP_576892.1	ILMN_1374561	0002510180	S	1336	CATCCTGAACGAAAACAGCACTTGAGAGACAACTTGGGGGACTGCCTTTT					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501486), mRNA.					
Rattus norvegicus	RefSeq	GI_62663520-S	ILMN_297241	LOC682504	XM_001061786.1	XM_001061786.1		682504	109505645	XM_001061786.1	LOC682504	XP_001061786.1	ILMN_1366020	0002100373	S	1192	AGCCTGAGGAGGAAGATGGAGATGGAGTCTGGGGTGCTGGAGGCCAAGAA					PREDICTED: Rattus norvegicus similar to Synaptonemal complex protein 2 (SCP-2) (Synaptonemal complex lateral element protein) (LOC682504), mRNA.					
Rattus norvegicus	RefSeq	GI_8394071-S	ILMN_265793	PSMA5	NM_017282.1	NM_017282.1		29672	8394071	NM_017282.1	Psma5	NP_058978.1	ILMN_1355230	0002360110	S	702	GGAGGAGAAGCTGAACGCAACTAACATCGAGCTGGCCACAGTGCAGCCTG	2	+	203841927-203841959:203848140-203848156	2q34	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 5 (Psma5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758491-S	ILMN_55240	DFFA	NM_053679.1	NM_053679.1		114214	16758491	NM_053679.1	Dffa	NP_446131.1	ILMN_1367916	0001690037	S	891	TGGAGGTGCAGACGCACGTATGTGGATTCCTTCCCCTCGCTGACTCACAG				5q36	Rattus norvegicus DNA fragmentation factor, alpha subunit (Dffa), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]	Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	ICAD-S	ICAD-S
Rattus norvegicus	RefSeq	GI_62664530-S	ILMN_62894	ATP8B1_PREDICTED	XM_214553.4	XM_214553.4		291555	109506708	XM_214553.4	Atp8b1_predicted	XP_214553.3	ILMN_1360542	0001500630	S	4022	CATCATCGCAGATGGCACAGCGGAGTACCGACGCACAGTGGAGAGCTGAG	18	-	60749123-60749124:60749125-60749172	18q12.1	PREDICTED: Rattus norvegicus ATPase, Class I, type 8B, member 1 (predicted) (Atp8b1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652536-S	ILMN_51074	LOC497822	XM_579625.1	XM_579625.1		497822	62652536	XM_579625.1	LOC497822	XP_579625.1	ILMN_1360085	0003800184	S	1998	GGTGGAAGCCTGAAGCCAGCACTGCCAGGCTCCTTGGAGTACATGTGTCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133555 (LOC497822), mRNA.					
Rattus norvegicus	RefSeq	GI_47576424-S	ILMN_277490	OLR1582	NM_001000079.1	NM_001000079.1		289240	47576424	NM_001000079.1	Olr1582	NP_001000079.1	ILMN_1354530	0006020451	S	889	GAAGTTAAAGAGGCTCTACGAAAAGCCATAGGTCTTAGGCCCCTTTCCTC	13	+	89412022-89412071	13q24	Rattus norvegicus olfactory receptor 1582 (Olr1582), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1582	Olr1582
Rattus norvegicus	RefSeq	GI_62647511-S	ILMN_70112	LOC502791	XM_578290.1	XM_578290.1		502791	62647511	XM_578290.1	LOC502791	XP_578290.1	ILMN_1372888	0000070632	S	505	AGTATTGTCAGCAGGAGGATCAGGTCATGTATGCCACAGAGAACAGGGGC				4q31	PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC502791), mRNA.					
Rattus norvegicus	RefSeq	GI_47575910-S	ILMN_293124	OLR1466	NM_001000024.1	NM_001000024.1		287480	47575910	NM_001000024.1	Olr1466	NP_001000024.1	ILMN_1354329	0003060288	S	240	ATTGTTGCAGAACATGCAGAGCCAGGACACATCCATCCTCTATGCAGGCT	10	+	60234449-60234498	10q24	Rattus norvegicus olfactory receptor 1466 (Olr1466), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1466	Olr1466
Rattus norvegicus	RefSeq	GI_62660169-S	ILMN_293491	RGD1564069_PREDICTED	XM_001069553.1	XM_001069553.1		305202	109500331	XM_001069553.1	RGD1564069_predicted	XP_001069553.1	ILMN_1372353	0002060086	S	431	GCACGGAGGCCGCACGTTGTCTAGAGTTACTGTACCAGCAGGAGTTTGTC				14p22	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (predicted) (RGD1564069_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653835-S	ILMN_49858	TRIP4_PREDICTED	XM_236360.3	XM_236360.3		315769	62653835	XM_236360.3	Trip4_predicted	XP_236360.3	ILMN_1351924	0003190563	S	1876	CCCAGAAACAATTCCAGGAGCAGTTCCCGGACATCAGTCAAGAGTCTGAC					PREDICTED: Rattus norvegicus thyroid hormone receptor interactor 4 (predicted) (Trip4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652252-S	ILMN_59900	LOC366907	XM_345829.2	XM_345829.2		366907	62652252	XM_345829.2	LOC366907	XP_345830.2	ILMN_1364129	0006370136	S	741	AACTGCACAGGTAGTGGATTCACAGGGGCATGCTGTGAGGCCTTGATGCC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC366907), mRNA.					
Rattus norvegicus	RefSeq	GI_62643189-S	ILMN_263421	CTNND2	XM_001064375.1	XM_001064375.1		114028	109464561	XM_001064375.1	Ctnnd2	XP_001064375.1	ILMN_1362972	0005080161	S	3552	CGCTGAAGACATCAAGCAGAACCAGGTTTCCACACAGCCTGTCCCCCAGG	2	+	83080472-83080496:83087694-83087718	2q22	PREDICTED: Rattus norvegicus catenin (cadherin-associated protein), delta 2 (Ctnnd2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62658660-S	ILMN_292103	RGD1559730_PREDICTED	XM_001075542.1	XM_001075542.1		501817	109515568	XM_001075542.1	RGD1559730_predicted	XP_001075542.1	ILMN_1362704	0006370161	S	126	ACCTGTGACATTTCTGGCTTTGGAAAACCCCTTGGGGATGACACTGGCCA					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (predicted) (RGD1559730_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454249-S	ILMN_264913	VWA5A	NM_198755.1	NM_198755.1		301097	38454249	NM_198755.1	Vwa5a	NP_942050.1	ILMN_1348964	0002650593	S	5410	CCATTGTTAATACTCTCCGGCCCACATTTTCACTGCTCCAGGGCATAGCC	8	+	40884453-40884502	8q22	Rattus norvegicus von Willebrand factor A domain containing 5A (Vwa5a), mRNA.		Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]		masa-1	masa-1
Rattus norvegicus	RefSeq	GI_62645584-S	ILMN_65925	PAK6_PREDICTED	XM_230519.4	XM_230519.4		296078	109468656	XM_230519.4	Pak6_predicted	XP_230519.3	ILMN_1362492	0001500427	S	3429	AGCTTCAAACCCTGGAGTCCCAGAGGGCCATGGGGAAGGATTTCACTGCC	3	+	105192047-105192096	3q35	PREDICTED: Rattus norvegicus p21 (CDKN1A)-activated kinase 6 (predicted) (Pak6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262179-S	ILMN_302079	POLR2G	NM_053948.2	NM_053948.2		117017	54262179	NM_053948.2	Polr2g	NP_446400.1	ILMN_1356866	0005130041	S	848	TGGCTCTCTGATGGATGACTACTTGGGACTTGTGAGCTGAGTGAGGGAGC	1	-	211462576-211462590:211462591-211462604:211462819-211462839	1q43	Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide G (Polr2g), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rpb7; MGC72993; MGC72732	Rpb7; MGC72993; MGC72732
Rattus norvegicus	RefSeq	GI_62641721-S	ILMN_54791	RBM4_PREDICTED	XM_215201.4	XM_215201.4		293663	109459736	XM_215201.4	Rbm4_predicted	XP_215201.4	ILMN_1349390	0002630463	S	1601	CCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGGTACCCCATCTCC	1	-	207394516-207394565	1q42-q43	PREDICTED: Rattus norvegicus RNA binding motif protein 4 (predicted) (Rbm4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647228-S	ILMN_56846	RGD1561171_PREDICTED	XM_575469.2	XM_575469.2		500117	109472028	XM_575469.2	RGD1561171_predicted	XP_575469.2	ILMN_1359998	0006940735	S	1451	GTCATATGTCTGTAGCCATGGAACTCAGGAGGCTGGGGCAGGAGAGCTGC	4	+	77465932-77465981	4q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330407D12 (predicted) (RGD1561171_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665414-S	ILMN_276100	SPIRE2_PREDICTED	XM_001078003.1	XM_001078003.1		307925	109508946	XM_001078003.1	Spire2_predicted	XP_001078003.1	ILMN_1358413	0005340577	S	2098	AGCCGCCAGACGCAGTCCCTCTATGTCCCCAACACCAGGACTCTCAACTT				19q12	PREDICTED: Rattus norvegicus spire homolog 2 (Drosophila) (predicted) (Spire2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661470-S	ILMN_66536	LOC498516	XM_579831.1	XM_579831.1		498516	62661470	XM_579831.1	LOC498516	XP_579831.1	ILMN_1363398	0002060128	S	371	TCACGGTCAGAACTGGGGTGACTGGGATGATGAAGGTGGGGGACTGGCTT					PREDICTED: Rattus norvegicus LOC498516 (LOC498516), mRNA.					
Rattus norvegicus	RefSeq	GI_47576112-S	ILMN_286973	OLR1393	NM_001000524.1	NM_001000524.1		363585	47576112	NM_001000524.1	Olr1393	NP_001000524.1	ILMN_1361032	0001230632	S	317	CTCTGGCCTCCACAGAATGTTTGATTTTGGTGGCAATGGCCTTCGACCGC	10	+	34852187-34852236	10q22	Rattus norvegicus olfactory receptor 1393 (Olr1393), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-34852920-34853855_ORF; Olr1393	ratchr10-34852920-34853855_ORF; Olr1393
Rattus norvegicus	RefSeq	GI_62663967-S	ILMN_273372	RGD1563437_PREDICTED	XM_001069190.1	XM_001069190.1		291356	109506150	XM_001069190.1	RGD1563437_predicted	XP_001069190.1	ILMN_1348930	0005550465	S	6625	GAAAGTAGCGTGCTAGACTCTAAGCCAATGAGCTCCTACAGCCCGTAGAG				17q12.3	PREDICTED: Rattus norvegicus similar to KIAA1217 (predicted) (RGD1563437_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659806-S	ILMN_263849	RGD1563749_PREDICTED	XR_009586.1	XR_009586.1		289194	109498985	XR_009586.1	RGD1563749_predicted		ILMN_1360274	0006520086	S	684	AAAGCCCGAGATTCAAACCAAGGCAGAGGCTAAGGCCCAGGGTGCAGCTC				13q23	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1563749_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649073-S	ILMN_55844	LOC298008	XM_232926.3	XM_232926.3		298008	62649073	XM_232926.3	LOC298008	XP_232926.3	ILMN_1374083	0005130059	S	87	CCCCGACCCTGGACATCTTATGGTGAACTGAAAGGACCCAGCGAATCTGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L18 (LOC298008), mRNA.					
Rattus norvegicus	RefSeq	GI_62641416-S	ILMN_62211	LOC365316	XM_344926.2	XM_344926.2		365316	62641416	XM_344926.2	LOC365316	XP_344927.2	ILMN_1367713	0003140164	S	693	CTGGGCAGTGGGAACTCAGCCTCACACCAGGCACTAGACAGTGTGAACTC					PREDICTED: Rattus norvegicus similar to Hornerin (LOC365316), mRNA.					
Rattus norvegicus	RefSeq	GI_62642393-S	ILMN_284059	FBXW4_PREDICTED	XM_001058429.1	XM_001058429.1		309444	109463941	XM_001058429.1	Fbxw4_predicted	XP_001058429.1	ILMN_1350234	0001050088	S	2303	TTGGGGCTCTGGGCTGGCTGCTCCTTAGGCCAGTTGTGGGAGACATGTTA				1q54	PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 4 (predicted) (Fbxw4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640724-S	ILMN_51328	RGD1560280_PREDICTED	XM_218798.4	XM_218798.4		308724	109458930	XM_218798.4	RGD1560280_predicted	XP_218798.4	ILMN_1370447	0006290070	S	1376	CCCTCACCTTTGCTGTCACCTTCCCACACAATGAGGATGCCTGCTATCTG	1	-	131770047-131770096	1q31	PREDICTED: Rattus norvegicus similar to hypothetical protein D430020F16 (predicted) (RGD1560280_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645042-S	ILMN_267209	OLFML2A_PREDICTED	XM_001060614.1	XM_001060614.1		296708	109469836	XM_001060614.1	Olfml2a_predicted	XP_001060614.1	ILMN_1362773	0007050372	S	2151	GTGCGGCATCCTCTACACGGTGGACACTTACAACCAGCATGAAGGCCAAG				3q11	PREDICTED: Rattus norvegicus olfactomedin-like 2A (predicted) (Olfml2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662369-I	ILMN_48314	CALR3_PREDICTED	XM_573877.1	XM_573877.1		364529	62662369	XM_573877.1	Calr3_predicted	XP_573877.1	ILMN_1375963	0007050017	S	1409	GGTCGTTTGTCCGGGTTCTGAAAAACAATCCTGTTTGTGATGGGGTCCCC				16p14	PREDICTED: Rattus norvegicus calreticulin 3 (predicted) (Calr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605699-S	ILMN_289376	BTF3	NM_001008309.1	NM_001008309.1		294680	56605699	NM_001008309.1	Btf3	NP_001008310.1	ILMN_1362163	0006980110	S	440	GGTGCAGACAGTCTGACCAGTTTGAGGAGACTGGCTGAAGCTCTGCCCAA	2	-	28904061-28904110	2q12	Rattus norvegicus basic transcription factor 3 (Btf3), mRNA.		The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC106007	MGC106007
Rattus norvegicus	RefSeq	GI_34871304-S	ILMN_65171	LOC287248	XM_220416.2	XM_220416.2		287248	34871304	XM_220416.2	LOC287248	XP_220416.2	ILMN_1362456	0004920064	S	1880	CACAGATACCCAAGTTCAGCAAGAAGACCCAAGGAATGGCCTCCCCACAC					PREDICTED: Rattus norvegicus similar to Nuclear envelope pore membrane protein POM 121 (Pore membrane protein of 121 kDa) (LOC287248), mRNA.					
Rattus norvegicus	RefSeq	GI_62655963-S	ILMN_64199	LOC497884	XM_573069.1	XM_573069.1		497884	62655963	XM_573069.1	LOC497884	XP_573069.1	ILMN_1361620	0006660059	S	1356	TTGGGCTGTGCACAAGTGGGAGCTGTGCAGGCAAAGATGCAGGGAGGGGT					PREDICTED: Rattus norvegicus similar to hypothetical protein SP192 (LOC497884), mRNA.					
Rattus norvegicus	RefSeq	GI_62655347-S	ILMN_64640	ARMC9_PREDICTED	XM_217465.4	XM_217465.4		301579	109486311	XM_217465.4	Armc9_predicted	XP_217465.4	ILMN_1359934	0003360494	S	1248	TTGCCCGAGGCCCATACCAGTCGCTCAGCCAGATGACTACAAAGAGGGCA	9	+	85019601-85019650	9q35	PREDICTED: Rattus norvegicus armadillo repeat containing 9 (predicted) (Armc9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47087084-S	ILMN_62108	KRT17	NM_212545.2	NM_212545.2		287702	71896558	NM_212545.2	Krt17	NP_997710.1	ILMN_1357492	0004570195	S	1227	GATGCCCACCTGACTCAGTACAAGCCAAAAGAACCTGTGACCACCCGCCA	10	-	89185327-89185343:89186169-89186194:89186281-89186287	10q32.1	Rattus norvegicus keratin 17 (Krt17), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]	The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence ISS]; The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns [goid 31424] [evidence ISS]; Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948391-S	ILMN_284914	XBP1	NM_001004210.1	NM_001004210.1		289754	51948391	NM_001004210.1	Xbp1	NP_001004210.1	ILMN_1373017	0002260136	S	1603	CCTTCTACAAGCAGAGAAACAGCAACCTGAGGGGCCTGTCCTTCCTTATG	14	+	86156756-86156805	14q21	Rattus norvegicus X-box binding protein 1 (Xbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	HTF	HTF
Rattus norvegicus	RefSeq	GI_62661680-S	ILMN_55575	ENTPD4_PREDICTED	XM_341346.3	XM_341346.3		361063	109501708	XM_341346.3	Entpd4_predicted	XP_341347.2	ILMN_1362557	0005890471	S	1822	TACAGGACCCGCTTTCTGCCCTTGAGAGACATCCGACAGGAGGTGTTCCG	15	+	49954410-49954435:49955440-49955463	15p11	PREDICTED: Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 4 (predicted) (Entpd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718688-S	ILMN_53646	LOC306450	XM_224840.3	XM_224840.3		306450	62718688	XM_224840.3	LOC306450	XP_224840.3	ILMN_1375054	0003170148	S	3593	TGCTTGCTTTCTCGGTAGTCATGGGAGGAAGAGGAAGGACAGACAGCGGC					PREDICTED: Rattus norvegicus similar to Ten-m3 (LOC306450), mRNA.					
Rattus norvegicus	RefSeq	GI_11968085-S	ILMN_286179	RPL4	NM_022510.1	NM_022510.1		64302	11968085	NM_022510.1	Rpl4	NP_071955.1	ILMN_1370009	0001990102	S	1055	TGCGTAGGAACACCATTCTCCGCCAGGCTAGGAATCACAAACTTCGAGTG	8	+	68371382-68371416:68371628-68371642	8q24	Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21426776-S	ILMN_286757	OAS1B	NM_144752.1	NM_144752.1		246268	21426776	NM_144752.1	Oas1b	NP_653353.1	ILMN_1362940	0004010079	S	1984	GGGCCATGGGGACTGTGTTATGGGACCAGAAATGGAAAGATGACCAGCGA	12	-	36858734-36858783	12q16	Rattus norvegicus 2-5 oligoadenylate synthetase 1B (Oas1b), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the viral life cycle, the set of processes by which a virus reproduces and spreads among hosts [goid 48525] [evidence IEA]	Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC108585; 2'5'oligoadenylatesynthetase-2	MGC108585; 2'5'oligoadenylatesynthetase-2
Rattus norvegicus	RefSeq	GI_62667078-S	ILMN_65373	LOC501593	XM_580216.1	XM_580216.1		501593	62667078	XM_580216.1	LOC501593	XP_580216.1	ILMN_1362485	0001740215	S	141	CTTGTCTCACCGGAAGACCTACATAGCTGGCATCCACTGTGCCGACAGCC					PREDICTED: Rattus norvegicus LOC501593 (LOC501593), mRNA.					
Rattus norvegicus	RefSeq	GI_62658793-S	ILMN_70310	RGD1559988_PREDICTED	XM_222107.4	XM_222107.4		288622	109495693	XM_222107.4	RGD1559988_predicted	XP_222107.4	ILMN_1359028	0005390025	S	2210	GCTTGTCGTGGAAGACGACCTCCGGTGTGCTCTCGCAAAGACTACCCCAA	12	-	27856010-27856059	12q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410018M08 (predicted) (RGD1559988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162338-S	ILMN_275379	ARF5	NM_024149.1	NM_024149.1		79117	13162338	NM_024149.1	Arf5	NP_077063.1	ILMN_1357054	0001690438	S	983	GGGGAGGAAAGTGAGGGCTCCGGGTGGTGCTATGATGTGGGACTGGATAT	4	+	55296677-55296726	4q22	Rattus norvegicus ADP-ribosylation factor 5 (Arf5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC105422	MGC105422
Rattus norvegicus	RefSeq	GI_6978656-S	ILMN_263413	CHRNB1	NM_012528.1	NM_012528.1		24261	6978656	NM_012528.1	Chrnb1	NP_036660.1	ILMN_1372351	0005080750	S	2148	GGCTACTGTAAGGTCCCCAGCAATGCGCACAGGTCCTACCCCATAAGTGC	10	-	56604985-56605034	10q24	Rattus norvegicus cholinergic receptor, nicotinic, beta 1 (muscle) (Chrnb1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The maintenance of membrane composition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft) [goid 1941] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48747] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]	 [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules [goid 15267] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts [goid 15276] [evidence IDA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence ISS]	RNACRB1; Acrb	RNACRB1; Acrb
Rattus norvegicus	RefSeq	GI_56090603-S	ILMN_267171	CXXC5	NM_001007628.1	NM_001007628.1		291670	56090603	NM_001007628.1	Cxxc5	NP_001007629.1	ILMN_1360192	0005690670	S	1660	CTTGCTCACAGCAGCAGAAGAAAGGGCTTCTTTTCGTGGTCCCCTGCTGG	18	+	28487313-28487362	18p11	Rattus norvegicus CXXC finger 5 (Cxxc5), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94398	MGC94398
Rattus norvegicus	RefSeq	GI_11560138-S	ILMN_288684	CARD9	NM_022303.1	NM_022303.1		64171	11560138	NM_022303.1	Card9	NP_071639.1	ILMN_1370875	0003990280	S	1660	ACAGGGAGAAGGGGATCACGGGAATACGACAGGCAGCGACAACACCGACA	3	-	4524916-4524965	3p13	Rattus norvegicus caspase recruitment domain family, member 9 (Card9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus [goid 9620] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus [goid 9620] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule [goid 32494] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42534] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42534] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45076] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45076] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection [goid 45089] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection [goid 45089] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45408] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45408] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family [goid 50700] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666690-S	ILMN_67194	NXT2_PREDICTED	XM_235755.4	XM_235755.4		315352	109510565	XM_235755.4	Nxt2_predicted	XP_235755.4	ILMN_1367050	0001050441	S	545	CAGAGCACTCCTAACAGCACGGTGTGGAAGATTGCAAGTGATTGCTTCCG	X	-	36314490-36314539	Xq14	PREDICTED: Rattus norvegicus nuclear transport factor 2-like export factor 2 (predicted) (Nxt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928767-S	ILMN_288141	ES22	NM_031565.1	NM_031565.1		29225	13928767	NM_031565.1	Es22	NP_113753.1	ILMN_1353157	0005570750	S	1814	AGGCTTTGAGGAGACTTCAGAACTGTGTGGTGGGAGTGGGCAGAGGCCAG	19	+	14924253-14924302	19p11	Rattus norvegicus esterase 22 (Es22), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]		Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence TAS]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence ISS]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652794-S	ILMN_268593	L3MBTL2	NM_001033695.1	NM_001033695.1		300320	76096325	NM_001033695.1	L3mbtl2	NP_001028867.1	ILMN_1368529	0006840113	S	3162	CAGTGAGGCCCCTGCTTCCTGTCATGTAGTGACTGTAGTGTGCTGCGTGA	7	+	120037625-120037674	7q34	Rattus norvegicus l(3)mbt-like 2 (Drosophila) (L3mbtl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124862	MGC124862
Rattus norvegicus	RefSeq	GI_21489994-S	ILMN_69477	RAB31	NM_145094.2	NM_145094.2		246324	77404175	NM_145094.2	Rab31	NP_659562.2	ILMN_1374976	0000380255	S	494	AGGAGTACGCTGAATCCATAGGTGCCCTCGTGGTGGAGACAAGTGCGAAG	9	-	104424685-104424734	9q37	Rattus norvegicus RAB31, member RAS oncogene family (Rab31), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Rab0	Rab0
Rattus norvegicus	RefSeq	GI_62648462-S	ILMN_267371	LOC679886	XM_001054829.1	XM_001054829.1		679886	109472867	XM_001054829.1	LOC679886	XP_001054829.1	ILMN_1351286	0002970270	S	701	GATCAGTGGGCCCGAAACAGTCCCTCTACCAAATGTCCCCTCTGTAGCCC	4|NW_047703.1	-	63002-63051		PREDICTED: Rattus norvegicus similar to Charged multivesicular body protein 4b (Chromatin-modifying protein 4b) (CHMP4b) (LOC679886), mRNA.					
Rattus norvegicus	RefSeq	GI_62638890-S	ILMN_294802	SYT5	XM_001071181.1	XM_001071181.1		54309	109461178	XM_001071181.1	Syt5	XP_001071181.1	ILMN_1373986	0001500603	S	2720	TGGGTTCGCCCCTCATACTGGAACCAAACCCTCCGAGACCTTTGCACGCT				1q12	PREDICTED: Rattus norvegicus synaptotagmin V (Syt5), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The lipid bilayer surrounding a recycling endosome [goid 55038] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638888-S	ILMN_294802	SYT5	XM_001071181.1	XM_001071181.1		54309	109461178	XM_001071181.1	Syt5	XP_001071181.1	ILMN_1352536	0002030603	S	1719	GCCCTAGAGGAGCCTGAGAAGATGGGACTCCAAGAGCGGAGTGAGACCTT				1q12	PREDICTED: Rattus norvegicus synaptotagmin V (Syt5), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The lipid bilayer surrounding a recycling endosome [goid 55038] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648195-S	ILMN_269543	TSPAN9_PREDICTED	XM_001067955.1	XM_001067955.1		312728	109474269	XM_001067955.1	Tspan9_predicted	XP_001067955.1	ILMN_1364027	0003870010	S	3611	GCGCGGCAGAGCCAGGTCATAAGTCCCAAACTGCCTTTTTGTTTTAGCTG				4q42	PREDICTED: Rattus norvegicus tetraspanin 9 (predicted) (Tspan9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659080-S	ILMN_263832	PGAM5	NM_001025272.1	NM_001025272.1		288731	70608188	NM_001025272.1	Pgam5	NP_001020443.1	ILMN_1369510	0002970131	S	390	GACCCCATTAGGTCGGGAACAGGCTGAACTCACGGGGATCCGACTTGCAA	12	+	46558295-46558305:46559135-46559173	12q16	Rattus norvegicus phosphoglycerate mutase family member 5 (Pgam5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			RGD1312028	RGD1312028
Rattus norvegicus	RefSeq	GI_62639288	ILMN_272790	FBXO17	NM_001013064.1	NM_001013064.1		292757	61556840	NM_001013064.1	Fbxo17	NP_001013082.1	ILMN_1651086	0002360035	S	1425	CAAAACAGCAGACCGAGCCGGACCTGACAGCACACACTTCTAGTCCCAGC	1	+	83843509-83843558	1q21	Rattus norvegicus F-box only protein 17 (Fbxo17), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57012389-S	ILMN_267221	RT1-N3	NM_001008855.1	NM_001008855.1		24750	57012389	NM_001008855.1	RT1-N3	NP_001008855.1	ILMN_1368471	0006520632	S	1130	CTCATCTAGGATACCGCTCTGGGACTTTAGGATTTCTAAGCTTGTCACCC	20	+	2810027-2810076	20p12	Rattus norvegicus RT1 class Ib gene, H2-TL-like, grc region (N3) (RT1-N3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62078784-A	ILMN_296418	SLC25A22	NM_001014027.1	NM_001014027.1		309111	62078784	NM_001014027.1	Slc25a22	NP_001014049.1	ILMN_1376955	0005670142	S	998	CATCAAACAGGAAGGCAAGGGGAGGGTTCAGGGTCCACATGGGTGGTGCA	1	-	201618893-201618942	1q41	Rattus norvegicus solute carrier family 25 (mitochondrial carrier, glutamate), member 22 (Slc25a22), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IEA]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence IEA]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1307826; MGC109527	RGD1307826; MGC109527
Rattus norvegicus	RefSeq	GI_62643435-S	ILMN_47724	MGST2_PREDICTED	XM_215562.3	XM_215562.3		295037	109464735	XM_215562.3	Mgst2_predicted	XP_215562.1	ILMN_1370709	0006350079	S	405	CCTGTCTGGGTCTCCTGTACATATACGCCCGTCACAAGTATTTCTGGGGC	2	+	140567721-140567770	2q26	PREDICTED: Rattus norvegicus microsomal glutathione S-transferase 2 (predicted) (Mgst2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542411-S	ILMN_273181	CORO1A	NM_130411.2	NM_130411.2		155151	31542411	NM_130411.2	Coro1a	NP_569095.1	ILMN_1364468	0000130091	S	1394	GTCACGGCTGGAGGAGGATGTGAGGAATCTCAACGCCATAGTGCAAAAGC	1	-	185852897-185852946	1q36	Rattus norvegicus coronin, actin binding protein 1A (Coro1a), mRNA.	An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence IEA]; An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence IEA]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence IEA]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence ISS]	The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome [goid 1845] [evidence IEA]; The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome [goid 1845] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8064] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence IEA]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a uropod, a rigid membrane projection with related cytoskeletal components at the trailing edge of a lymphocyte or other cell in the process of migrating or being activated [goid 32796] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a higher concentration, in a concentration gradient of a specific chemical [goid 50918] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a higher concentration, in a concentration gradient of a specific chemical [goid 50918] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament [goid 51126] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament [goid 51126] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IEA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]	MGC93041	MGC93041
Rattus norvegicus	RefSeq	GI_62643306-S	ILMN_64435	TLOC1_PREDICTED	XM_215528.3	XM_215528.3		294912	62643306	XM_215528.3	Tloc1_predicted	XP_215528.3	ILMN_1349240	0006510133	S	2523	TCATCTCCAGCAGAAGTGAGGGGCACTGAGTGGACGACGAGGCTCTTCCT				2q24	PREDICTED: Rattus norvegicus translocation protein 1 (predicted) (Tloc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577648-S	ILMN_271272	OLR551	NM_001000670.1	NM_001000670.1		404872	47577648	NM_001000670.1	Olr551	NP_001000670.1	ILMN_1357869	0003800711	S	886	GAGGTGAAGGAAGCAGCAAAGAGGTTGACTTGTGGGTGGAGGAACAACTC	3	-	70808047-70808096	3q24	Rattus norvegicus olfactory receptor 551 (Olr551), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr551	Olr551
Rattus norvegicus	RefSeq	GI_13162315-S	ILMN_299537	GNG7	NM_024138.1	NM_024138.1		58979	13162315	NM_024138.1	Gng7	NP_077052.1	ILMN_1354113	0003940017	S	2785	AGGATGTGCTGGTGTAGCCTGTGTACGTCCTAAGCACTGGAGCCCTGCCT	7	+	10271606-10271655	7q11	Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 7 (Gng7), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence NAS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses guanylyl cyclase activity [goid 7168] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses guanylyl cyclase activity [goid 7168] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651025-S	ILMN_282164	PCNX	XM_001055794.1	XM_001055794.1		314288	109479600	XM_001055794.1	Pcnx	XP_001055794.1	ILMN_1366238	0001170102	S	6691	CAGGCAACACCTCGAGTCCTGCCACCATTTCACATGCCAGAAAGGGGGAA				6q24	PREDICTED: Rattus norvegicus pecanex homolog (Drosophila) (Pcnx), mRNA.					
Rattus norvegicus	RefSeq	GI_62647169-S	ILMN_53831	LOC502753	XM_578251.1	XM_578251.1		502753	62647169	XM_578251.1	LOC502753	XP_578251.1	ILMN_1363872	0002470021	S	1668	GCCACATACGAGAGTGGATTCTCCAGGGAAAAGTTTCCAATCAGCCGCCC					PREDICTED: Rattus norvegicus similar to T cell receptor variable region:SUBUNIT=beta:ISOTYPE=3.3 (LOC502753), mRNA.					
Rattus norvegicus	RefSeq	GI_47576218-S	ILMN_268786	OLR1329	NM_001000791.1	NM_001000791.1		405075	47576218	NM_001000791.1	Olr1329	NP_001000791.1	ILMN_1374627	0005220592	S	434	CCACTGCTGTGTACATTATGGGGACCTTTGGGGCCACAGTCCATACCAGC	8	+	42873069-42873118	8q22	Rattus norvegicus olfactory receptor 1329 (Olr1329), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1329	Olr1329
Rattus norvegicus	RefSeq	GI_62656845-S	ILMN_48723	STXBP4_PREDICTED	XM_220860.3	XM_220860.3		303443	62656845	XM_220860.3	Stxbp4_predicted	XP_220860.3	ILMN_1357569	0001230136	S	1506	CTTCCAGGGAGAGTTGGGGAGAACAAAGAGCCAACCAGTGAATGCCATCT				10q26	PREDICTED: Rattus norvegicus syntaxin binding protein 4 (predicted) (Stxbp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650241-S	ILMN_277333	PRKCN	XM_001054495.1	XM_001054495.1		313834	109477835	XM_001054495.1	Prkcn	XP_001054495.1	ILMN_1371176	0005570377	S	4408	TACAGGTTCAGTATCCCTATTTCCGCTGCTCTACACCGGGAGGGCTTCAG	6	-	1728626-1728675	6q11	PREDICTED: Rattus norvegicus protein kinase C, nu (Prkcn), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62657428-S	ILMN_63227	LOC501746	XM_577147.1	XM_577147.1		501746	62657428	XM_577147.1	LOC501746	XP_577147.1	ILMN_1364749	0004210541	S	324	GTGGAGCGGATTATCCTGACTAGGGACAAGACAGTGGTCATGGGAGACTG					PREDICTED: Rattus norvegicus similar to 5(3)-deoxyribonucleotidase (LOC501746), mRNA.					
Rattus norvegicus	RefSeq	GI_51948471-S	ILMN_275573	TMEM30A	NM_001004248.1	NM_001004248.1		300857	51948471	NM_001004248.1	Tmem30a	NP_001004248.1	ILMN_1360657	0005550056	S	1314	GCATCAAGGCCAGTCCTGTTCAACCTAGCTTTTGAATGCCGATGTCTGGT	8	-	84828101-84828150	8q31	Rattus norvegicus transmembrane protein 30A (Tmem30a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94262	MGC94262
Rattus norvegicus	RefSeq	GI_62646525-S	ILMN_67233	RGD1562883_PREDICTED	XM_238302.4	XM_238302.4		296468	109469361	XM_238302.4	RGD1562883_predicted	XP_238302.4	ILMN_1361590	0006840184	S	651	CCTGAGGCTGTGCCCGATCTGCAGGGTGCCTATCTGTAACTGTGTACGCA	3	+	170042552-170042601	3q43	PREDICTED: Rattus norvegicus similar to livin inhibitor of apoptosis isoform beta (predicted) (RGD1562883_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666818	ILMN_280327	RGD1561642_PREDICTED	XM_001072216.1	XM_001072216.1		363466	109511753	XM_001072216.1	RGD1561642_predicted	XP_001072216.1	ILMN_1650373	0003940348	S	1855	CCTCCACGACCTTGTCCAACACAGGCTGAACCGGCATCTGAAGCTGACTT				Xq21	PREDICTED: Rattus norvegicus similar to RalBP1 associated Eps domain containing protein 2 (RalBP1-interacting protein 2) (predicted) (RGD1561642_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638388-S	ILMN_69916	LOC361460	XM_341739.2	XM_341739.2		361460	62638388	XM_341739.2	LOC361460	XP_341740.2	ILMN_1374800	0002810487	S	74	GAGGAACACTCCTCCATTGCTGGTGGGACTGCAAACTGCTACAACCATTC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC361460), mRNA.					
Rattus norvegicus	RefSeq	GI_62649048-S	ILMN_291189	RGD1304816_PREDICTED	XM_001057312.1	XM_001057312.1		362528	109476565	XM_001057312.1	RGD1304816_predicted	XP_001057312.1	ILMN_1362339	0002760048	S	3996	GGGCTCATCAGAGTTGCTGCGACACGAGGGTCCTCCTCAGAGAACTACGA				5q24	PREDICTED: Rattus norvegicus similar to mKIAA0674 protein (predicted) (RGD1304816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654219-S	ILMN_68904	NUDT16_PREDICTED	XM_343464.3	XM_343464.3		363129	109483907	XM_343464.3	Nudt16_predicted	XP_343465.2	ILMN_1370474	0003850278	S	649	TCTAAGTAGAGTCGGCCCAGCATGGACCCCTGGAACCCAAGTTGAAGGCC	8	-	110200420-110200461:110200462-110200469	8q32	PREDICTED: Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 16 (predicted) (Nudt16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657460-S	ILMN_66343	POLR2H_PREDICTED	XM_213574.4	XM_213574.4		287988	109489486	XM_213574.4	Polr2h_predicted	XP_213574.3	ILMN_1350762	0003140253	S	717	CCGACCAGTCTGTAAAAGGCCAAGTGGGAGAGCCTAGCACGAACCTGAAG	10	-	108968472-108968521	10q32.3	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide H (predicted) (Polr2h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27690883-S	ILMN_66343	POLR2H_PREDICTED	XM_213574.4	XM_213574.4		287988	109489486	XM_213574.4	Polr2h_predicted	XP_213574.3	ILMN_1368428	0002510358	S	482	TGAGGCTTCAGGGCGACGCCAACAACCTGCATGGATTTGAGGTGGACTCC	10	-	108968707-108968756	10q32.3	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide H (predicted) (Polr2h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649964-S	ILMN_296537	RGD1566083_PREDICTED	XM_216580.2	XM_216580.2		298602	62649964	XM_216580.2	RGD1566083_predicted	XP_216580.1	ILMN_1367150	0005290411	S	600	TAGTTTGGTGGGATCTGTCAGGGGTGGGGGCAGGGAGTGGCTGGGAATTT	5	-	160325319-160325366:160325367-160325368	5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC24047 (predicted) (RGD1566083_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650946-S	ILMN_280418	GALNTL1	XM_001053416.1	XM_001053416.1		362760	109479579	XM_001053416.1	Galntl1	XP_001053416.1	ILMN_1355327	0000360131	S	3913	CCGACGTGGACTTTGGGGCTAGGAACCTGGGCTTCTCTCTGTGAATGTAA				6q24	PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1, transcript variant 2 (Galntl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62663077-S	ILMN_285653	IRX4_PREDICTED	XM_001057125.1	XM_001057125.1		306655	109460617	XM_001057125.1	Irx4_predicted	XP_001057125.1	ILMN_1357140	0004010168	S	2406	CCTTCTGGGTTTTAGGCATACTGGTGTTCCCGTGAAGGAACTCCTCGGCC				17p14	PREDICTED: Rattus norvegicus Iroquois related homeobox 4 (Drosophila) (predicted), transcript variant 1 (Irx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649060-S	ILMN_54903	AKNA_PREDICTED	XM_342848.2	XM_342848.2		362530	62649060	XM_342848.2	Akna_predicted	XP_342849.2	ILMN_1372099	0000840601	S	3997	CAGATGAGCTGCAAGTATGGACGCCACAGGAGCCCAGGTTCTCCCTCAAG				5q24	PREDICTED: Rattus norvegicus AT-hook transcription factor (predicted) (Akna_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652594-S	ILMN_282335	LY6D_PREDICTED	XM_235420.3	XM_235420.3		315075	62652594	XM_235420.3	Ly6d_predicted	XP_235420.3	ILMN_1367488	0006860066	S	370	GCCTCGGCCTTCTCTCTGTTGTGGCGTTCTGCCTTTAACACACTGCTAGG	7	-	112873268-112873280:112873281-112873317	7q34	PREDICTED: Rattus norvegicus lymphocyte antigen 6 complex, locus D (predicted) (Ly6d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645044-S	ILMN_267508	RGD1562587_PREDICTED	XM_001060730.1	XM_001060730.1		366035	109469840	XM_001060730.1	RGD1562587_predicted	XP_001060730.1	ILMN_1374094	0006420594	S	858	CAGTGCTGGTTACTCTCGTATGGTCAAAGTCTGGGACTGCCTCACAGGGA				3q11	PREDICTED: Rattus norvegicus similar to cis-Golgi matrix protein GM130 (predicted) (RGD1562587_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646825-S	ILMN_60335	LOC497784	XM_579367.1	XM_579367.1		497784	62646825	XM_579367.1	LOC497784	XP_579367.1	ILMN_1367253	0000520484	S	3767	GGTTGAGCAAAGTAGCTCTTCCATGTCTCTTCCCCTGGCATCAGAGTCTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013080 (LOC497784), mRNA.					
Rattus norvegicus	RefSeq	GI_62667219-S	ILMN_50572	LOC317568	XM_229078.3	XM_229078.3		317568	62667219	XM_229078.3	LOC317568	XP_229078.3	ILMN_1366168	0003360040	S	640	CCAAGGTAACTCATTGTGATTCCAATGCCCTTCCCCCAGCCCGAAGCCTC					PREDICTED: Rattus norvegicus similar to SET domain-containing protein (LOC317568), mRNA.					
Rattus norvegicus	RefSeq	GI_62647547-S	ILMN_48948	LOC502810	XM_578309.1	XM_578309.1		502810	62647547	XM_578309.1	LOC502810	XP_578309.1	ILMN_1372672	0002360435	S	30	GTGCTCATCCAGTCTCTAACAACCATGACTGCATCTCCGGGGGAAAAGGT				4q31	PREDICTED: Rattus norvegicus similar to Ig kappa light chain variable region precursor (LOC502810), mRNA.					
Rattus norvegicus	RefSeq	GI_62661565-S	ILMN_279913	ZDHHC20	NM_001039336.1	NM_001039336.1		305923	86129557	NM_001039336.1	Zdhhc20	NP_001034425.1	ILMN_1372861	0005130632	S	1036	AGCTTGGGTGATGGTTGCAGTTTTCCAACTCGCCTTGTGGGGATGGATCC	15	-	36884928-36884976:36887166-36887166	15p12	Rattus norvegicus zinc finger, DHHC domain containing 20 (Zdhhc20), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19705446-S	ILMN_292499	CLK3	NM_134340.1	NM_134340.1		171305	19705446	NM_134340.1	Clk3	NP_599167.1	ILMN_1359610	0004210161	S	1542	AGCACACGAAGAGTTGGAGAGCTGGACTGGGCTGCTGGCCCCTTTTCTCC	8	-	61519354-61519403	8q24	Rattus norvegicus CDC-like kinase 3 (Clk3), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664452-S	ILMN_293501	RGD1561627_PREDICTED	XM_225935.3	XM_225935.3		291595	62664452	XM_225935.3	RGD1561627_predicted	XP_225935.3	ILMN_1359747	0006200411	S	51	CAACAGGGAAGGCCATGATGGTGTCTGGAGGCAGAGGATTCACTCTTGCT	18	-	42138539-42138588	18q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1561627_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27721842-S	ILMN_62334	CDCP1_PREDICTED	XM_236747.4	XM_236747.4		301082	109484134	XM_236747.4	Cdcp1_predicted	XP_236747.1	ILMN_2040114	0006250600	S	2452	CCACGCCACCCCCTATATTCTCCAGGACCCCAACTGCAAAGTTCACTGCA	8	-	127954560-127954609	8q32	PREDICTED: Rattus norvegicus CUB domain containing protein 1 (predicted) (Cdcp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25282394-S	ILMN_289087	GSTM5	NM_172038.1	NM_172038.1		64352	25282394	NM_172038.1	Gstm5	NP_742035.1	ILMN_1352924	0005910458	S	609	GTCTGACCGCTGCTTCAAGATGCCAATCAACAACAAGATGGCCAAGTGGG	2	+	203458848-203458897	2q34	Rattus norvegicus glutathione S-transferase, mu 5 (Gstm5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718113-S	ILMN_66219	LOC503328	XM_578862.1	XM_578862.1		503328	62718113	XM_578862.1	LOC503328	XP_578862.1	ILMN_1358548	0001580072	S	444	TGTCCCACTCAGAGACCTCCATTCAGGCACCCAAGTGTTGGCAGTGCCCT					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503328), mRNA.					
Rattus norvegicus	RefSeq	GI_62648658-S	ILMN_57483	LOC366313	XM_578444.1	XM_578444.1		366313	62648658	XM_578444.1	LOC366313	XP_578444.1	ILMN_1351789	0005570039	S	435	GCTGCCAGAAGCAAGCATGGCCTCAAGTTGCAGAACAATCTCGGGGGCCT				5q13	PREDICTED: Rattus norvegicus similar to Ab2-162 (LOC366313), mRNA.					
Rattus norvegicus	Unigene	Rn.23597	ILMN_161418	RN.23597	Rn.23597		Rn.23597		8498530	BE106428			ILMN_1530551	0002480239	S	55	AATATGATCTTTTTACTTGGGATTCCCTGATTCAATTTCAGTGGCTTAGT					UI-R-BT1-asv-h-05-0-UI.s1 UI-R-BT1 Rattus norvegicus cDNA clone UI-R-BT1-asv-h-05-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62641308	ILMN_278108	TBC1D10B_PREDICTED	XM_001078373.1	XM_001078373.1		365372	109462888	XM_001078373.1	Tbc1d10b_predicted	XP_001078373.1	ILMN_1650035	0006660398	S	3009	GCCTGTCATCCCACTGTTTTCTGGGGGCCAAGGCTGTTTTCTCTCCTGGA				1q36	PREDICTED: Rattus norvegicus TBC1 domain family, member 10b (predicted) (Tbc1d10b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645006-S	ILMN_59977	LOC362121	XM_342423.2	XM_342423.2		362121	62645006	XM_342423.2	LOC362121	XP_342424.2	ILMN_1357950	0003710672	S	352	GCAGCCACCCCAACCCGCGGAAGTGCGAGATCGATGAGGATGTCATTGAA					PREDICTED: Rattus norvegicus similar to spermidine synthase (LOC362121), mRNA.					
Rattus norvegicus	RefSeq	GI_62646237-S	ILMN_265964	MGC109145	XM_001067976.1	XM_001067976.1		499934	109471198	XM_001067976.1	MGC109145	XP_001067976.1	ILMN_1359001	0000110605	S	799	AGGTCCTGAAGATGTTGGGGGTTGGTGGGGGAGGGACAGTCGAAGGCCTG				3q42	PREDICTED: Rattus norvegicus similar to mannosidase, beta A, lysosomal-like (MGC109145), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62717906-S	ILMN_54803	RGD1561850_PREDICTED	XM_576671.2	XM_576671.2		501252	109512972	XM_576671.2	RGD1561850_predicted	XP_576671.2	ILMN_1356275	0001740278	S	219	TGATGATTGGGACCACAGGCTGCATGTTGAATTGCCAGTCCTTCAATCTG	Un|NW_047851.1	+	2857601-2857618:2858955-2858986		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (predicted) (RGD1561850_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641827-S	ILMN_60505	RGD1560108_PREDICTED	XM_574611.2	XM_574611.2		499309	109459809	XM_574611.2	RGD1560108_predicted	XP_574611.2	ILMN_1365149	0004010092	S	1828	TTGTGCGATGCTCCGCGCTTCCCGAAAAGCCAAAGCGCCTCCCCAGTGTT	1	+	210106942-210106991	1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700081O15 (predicted) (RGD1560108_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652450-S	ILMN_69867	LOC314992	XM_235324.3	XM_235324.3		314992	62652450	XM_235324.3	LOC314992	XP_235324.3	ILMN_1370708	0002850020	S	1258	TGAGTGAGGGAAAGCCACAGGGCATCAGCAGGGCAAGAAGAGGCCACAGA				7q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130401M01 (predicted) (LOC314992), mRNA.					
Rattus norvegicus	RefSeq	GI_18959231-S	ILMN_264988	SEP15	NM_133297.1	NM_133297.1		113922	18959231	NM_133297.1	Sep15	NP_579831.1	ILMN_1355675	0004210619	S	889	GAAAGTAAGTGACAGAAAACTGCAAACCAGCACGCCCGCCCCAGAGCCTG	2	+	242792690-242792739	2q44	Rattus norvegicus selenoprotein (Sep15), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]	The progressive compaction of the spermatid chromatin so that it reaches a level of condensation that is not compatible with nuclear activities such as transcription or DNA replication [goid 35092] [evidence IMP]; The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis [goid 51084] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: thioredoxin + H2O2 = thioredoxin disulfide + H2O [goid 8379] [evidence IDA]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62649377-A	ILMN_268029	KIF2C	NM_134472.2	NM_134472.2		171529	20428650	NM_134472.2	Kif2c	NP_608302.1	ILMN_1376370	0000130301	S	2762	CATGACTCAGATCAGGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAG				5q36	Rattus norvegicus kinesin family member 2C (Kif2c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of polarized microtubule-based cytoskeletal structures [goid 30951] [evidence ISS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	KRP2	KRP2
Rattus norvegicus	RefSeq	GI_62659938-S	ILMN_56596	MIXL1_PREDICTED	XM_222997.3	XM_222997.3		289311	109498294	XM_222997.3	Mixl1_predicted	XP_222997.3	ILMN_1353317	0004610041	S	425	GGCGTCAGAGCGGGAAGTCGTTTCAGCCCTTATCCTCAAGGCGGGAAGAT	13	-	96429442-96429491	13q26	PREDICTED: Rattus norvegicus Mix1 homeobox-like 1 (Xenopus laevis) (predicted) (Mixl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650419-S	ILMN_276316	RGD1309228	NM_001017451.1	NM_001017451.1		298851	62945257	NM_001017451.1	RGD1309228	NP_001017451.1	ILMN_1363970	0000870497	S	2552	AGATGCTCTCACTCTCGGTAGAAGAAAGGCAGCAGGAAGGAGCCCTGGGG	6	-	25708830-25708879	6q14	Rattus norvegicus similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) (RGD1309228), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47576818-S	ILMN_302087	OLR824	NM_001000905.1	NM_001000905.1		405215	47576818	NM_001000905.1	Olr824	NP_001000905.1	ILMN_1364712	0000050440	S	295	TCCTTTGGGGCCTGCTTCTCACAGGCCTTTGTCTATCTTGTCCTTGGGGC	4	+	152732561-152732610	4q42	Rattus norvegicus olfactory receptor 824 (Olr824), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr824	Olr824
Rattus norvegicus	RefSeq	GI_62641556-S	ILMN_293544	RGD1559981_PREDICTED	XM_001056018.1	XM_001056018.1		499281	109463074	XM_001056018.1	RGD1559981_predicted	XP_001056018.1	ILMN_1353276	0002360372	S	1720	TGGGACAGCGACTAGTGGGTCTTCAGCTGCTCCACAGGCTGCGGCTTTTA				1q41	PREDICTED: Rattus norvegicus similar to leucine rich repeat containing 27 (predicted), transcript variant 1 (RGD1559981_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577084-S	ILMN_274918	OLR769	NM_001000371.1	NM_001000371.1		296022	47577084	NM_001000371.1	Olr769	NP_001000371.1	ILMN_1372964	0002680731	S	667	ATCACCGTTCGCCAGAGTTCGAAAGCCGGAGCTTTGAAGGCTCTGTCCAC	3	-	97204105-97204154	3q34	Rattus norvegicus olfactory receptor 769 (Olr769), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr769; ratchr3-97101249-97100311_ORF	Olr769; ratchr3-97101249-97100311_ORF
Rattus norvegicus	RefSeq	GI_62657359-S	ILMN_274471	RECQL5_PREDICTED	XM_001081701.1	XM_001081701.1		287834	109492251	XM_001081701.1	Recql5_predicted	XP_001081701.1	ILMN_1349344	0005720280	S	3303	TGTTCAAGGGCTTTGCCCGCCACCTCTCACATTTGCTGGCTCAGAAGCTC				10q32.3	PREDICTED: Rattus norvegicus RecQ protein-like 5 (predicted) (Recql5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642468-S	ILMN_284222	RGD1565542_PREDICTED	XM_001058548.1	XM_001058548.1		502389	109463943	XM_001058548.1	RGD1565542_predicted	XP_001058548.1	ILMN_1360676	0006020717	S	241	GCCTTACCGAGGGTGCCAAGGACGAGTGTAATGTGGTGGAAGTTGTGGCC				1q54	PREDICTED: Rattus norvegicus similar to nucleophosmin/nucleoplasmin-3 (predicted) (RGD1565542_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978778-S	ILMN_289181	DRD4	NM_012944.1	NM_012944.1		25432	6978778	NM_012944.1	Drd4	NP_037076.1	ILMN_1354010	0005050100	S	1317	GGTTCCAAGCCTGTGTGCAGAGTGCGCTGGCGGCTTTCGTTCGTCTGATT	1	+	201488685-201488734	1q41	Rattus norvegicus dopamine receptor D4 (Drd4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence NAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IMP]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7195] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7195] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IDA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information received a short time (up to about 30 minutes) ago. This type of memory is typically dependent on direct, transient effects of second messenger activation [goid 7614] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence TAS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IMP]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue [goid 8355] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups [goid 14075] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence IEA]; The response of an organism to a perceived external threat [goid 42596] [evidence ISS]; The response of an organism to a perceived external threat [goid 42596] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence IMP]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50709] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence IDA]; Any process that modulates the frequency, rate or extent of calcium-mediated signaling, the process by which a cell uses calcium ions to convert an extracellular signal into a response [goid 50848] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51927] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]	A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D4 receptors [goid 1593] [evidence TAS]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D4 receptors [goid 1593] [evidence IDA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D4 receptors [goid 1593] [evidence ISS]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D4 receptors [goid 1593] [evidence IEA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D4 receptors [goid 1593] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Interacting selectively with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine [goid 35240] [evidence IDA]	D4RA	D4RA
Rattus norvegicus	RefSeq	GI_51948537-S	ILMN_267698	ZMYND10	NM_001004284.1	NM_001004284.1		363139	51948537	NM_001004284.1	Zmynd10	NP_001004284.1	ILMN_1372392	0003130075	S	1612	ACGTAGAGGACCAGGCCACAGCATCAGCAAACTAGCAGACAGGGTTGGGG	8	+	112798467-112798516	8q32	Rattus norvegicus zinc finger, MYND-type containing 10 (Zmynd10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC94352	MGC94352
Rattus norvegicus	RefSeq	GI_62653886-S	ILMN_52299	RGD1560796_PREDICTED	XM_236387.4	XM_236387.4		315798	109483610	XM_236387.4	RGD1560796_predicted	XP_236387.4	ILMN_1348815	0000730025	S	2861	CAGTATCTGGTGGGACAGGTGGCAGTCCTGGAGGAAGTAGCCCTCGTAGA	8	+	76941243-76941292	8q24	PREDICTED: Rattus norvegicus similar to suppressor of hairy wing homolog 4 isoform 1 (predicted) (RGD1560796_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980973-S	ILMN_53957	GP5	NM_012795.2	NM_012795.2		25259	83313662	NM_012795.2	Gp5	NP_036927.1	ILMN_1368696	0001230358	S	1550	CAGCTGGTGGCCAGGGGTGAAAGTCCCGATAACCGCTTCTACTGGAATCT	11	+	72344200-72344249	11q22	Rattus norvegicus glycoprotein V (platelet) (Gp5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding the platelet alpha granule [goid 31092] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	PLGPV	PLGPV
Rattus norvegicus	RefSeq	GI_62655038-S	ILMN_298746	STAT4	NM_001012226.1	NM_001012226.1		367264	58866023	NM_001012226.1	Stat4	NP_001012226.1	ILMN_1376399	0000270377	S	2666	CCTGAGCCCAACGACAATTGAGACTGCAATGAATTCCCCGTATTCTGCTG	9	-	46510517-46510539:46511711-46511737	9q22	Rattus norvegicus signal transducer and activator of transcription 4 (Stat4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_58865703-A	ILMN_292309	MTL5	NM_001012069.1	NM_001012069.1		309142	58865703	NM_001012069.1	Mtl5	NP_001012069.1	ILMN_1376449	0002450706	S	1867	ATTACTGCAGCACTGTCGCCTGCAGACCAGTCACAGTGACCTCACACACC	1	+	205934182-205934231	1q42	Rattus norvegicus metallothionein-like 5, testis-specific (tesmin) (Mtl5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62657670-S	ILMN_291414	SIM2_PREDICTED	XM_001055265.1	XM_001055265.1		304071	109494067	XM_001055265.1	Sim2_predicted	XP_001055265.1	ILMN_1361502	0005130546	S	2112	TCCTGTGAATGCTGCCCGGCATGGACTTGTGCCAAACTATGAAGCGCCCG				11q11	PREDICTED: Rattus norvegicus single-minded 2 (predicted) (Sim2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577280-S	ILMN_276034	OLR609	NM_001000335.1	NM_001000335.1		295835	47577280	NM_001000335.1	Olr609	NP_001000335.1	ILMN_1366170	0002970279	S	806	CATGGCTTGTGGTCAAAGTGGCAACTGTGCTTTTCACTGTCATGATCCCC	3	-	71915882-71915931	3q24	Rattus norvegicus olfactory receptor 609 (Olr609), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr609	Olr609
Rattus norvegicus	RefSeq	GI_62644834	ILMN_51145	RAPGEF1	XM_216018.3	XM_216018.3		63881	62644834	XM_216018.3	Rapgef1	XP_216018.3	ILMN_1650519	0006130095	S	2499	ACTGTGGTTAGGGATTTGGGAGTGGAGGTGTGGGCTGTCCTGCCTGGAGT				3p12	PREDICTED: Rattus norvegicus Rap guanine nucleotide exchange factor (GEF) 1 (Rapgef1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence EXP]		
Rattus norvegicus	RefSeq	GI_62664274-S	ILMN_280973	PCDHGA12	NM_001037337.1	NM_001037337.1		498850	82617652	NM_001037337.1	Pcdhga12	NP_001032414.1	ILMN_1350368	0001940066	S	2373	GACCCGGATTGGCTGACGTTGCAGCCTCTCGTTTTGTGGGCGTAGATGGA	18	+	30676187-30676236	18p11	Rattus norvegicus protocadherin gamma subfamily A, 12 (Pcdhga12), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_59710100-S	ILMN_56835	ELF1	NM_053520.2	NM_053520.2		85424	59710100	NM_053520.2	Elf1	NP_445972.2	ILMN_1372256	0006860176	S	2021	GGTTTTCCTCTCAGGTAGCCATCACACAGAATGAACTGCTAGAGCCCAGC	15	+	60834706-60834755	15q12	Rattus norvegicus E74-like factor 1 (Elf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate, or extent of production of a cytokine [goid 1817] [evidence IEA]; Any process that modulates the frequency, rate, or extent of production of a cytokine [goid 1817] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50860] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50860] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393477-S	ILMN_287305	GRIA4	NM_017263.1	NM_017263.1		29629	8393477	NM_017263.1	Gria4	NP_058959.1	ILMN_1371769	0002060711	S	2775	CGTGTGCTTACCCCTGACTGCCCCAAGGCCGTACACACAGGAACTGCAAT	8	-	957335-957384	8q11	Rattus norvegicus glutamate receptor, ionotropic, 4 (Gria4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus [goid 32281] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [pmid 11836517] [evidence TAS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 11036266] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [pmid 11036266] [evidence IMP]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 11036266] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 11036266] [evidence IMP]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [pmid 16246117] [evidence TAS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [pmid 11036266] [evidence IMP]; Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51968] [pmid 11036266] [evidence IMP]	 [goid 4971] [evidence IMP];  [goid 4971] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]	Glur4	Glur4
Rattus norvegicus	RefSeq	GI_62646948-S	ILMN_66117	FLNC_PREDICTED	XM_342653.3	XM_342653.3		362332	109471812	XM_342653.3	Flnc_predicted	XP_342654.2	ILMN_1360121	0002630692	S	8329	AGTGGGGTGATGAAAGTGTCCCTGGAAGCCCCTTCAAGGTCAATGTGCCC	4	+	56340669-56340718	4q22	PREDICTED: Rattus norvegicus filamin C, gamma (actin binding protein 280) (predicted) (Flnc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078934-S	ILMN_289125	ALS2CR12	NM_001014101.1	NM_001014101.1		316413	62078934	NM_001014101.1	Als2cr12	NP_001014123.1	ILMN_1350975	0003780452	S	1354	GGAGACCCTGAACACAAGCCTTTACCACTGCCAGATAGAACTCCAGAGAG	9	-	57442466-57442515	9q31	Rattus norvegicus amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human) (Als2cr12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62662620-S	ILMN_66162	LOC364577	XM_573906.1	XM_573906.1		364577	62662620	XM_573906.1	LOC364577	XP_573906.1	ILMN_1357926	0004280253	S	944	CTCATCTACATCTAGCCAACAGTCACAGGCTTACTGTGGTTGTTCTGGGT				16p11	PREDICTED: Rattus norvegicus similar to reticulocalbin (LOC364577), mRNA.					
Rattus norvegicus	RefSeq	GI_54020746-S	ILMN_273966	LOC259246	NM_147214.1	NM_147214.1		259246	22219449	NM_147214.1	LOC259246	NP_671747.1	ILMN_1374993	0006940427	S	578	CTGTCTCCAGGCCCGAGGATGAAGAAAGGCCTGAGCCTCCAGTGCTGAGT	5	-	78707571-78707581:78708404-78708423:78708424-78708442	5q24	Rattus norvegicus alpha-2u globulin PGCL1 (LOC259246), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]	MGC124936; MGC112596	MGC124936; MGC112596
Rattus norvegicus	RefSeq	GI_22219449-S	ILMN_273966	LOC259246	NM_147214.1	NM_147214.1		259246	22219449	NM_147214.1	LOC259246	NP_671747.1	ILMN_1351728	0003610706	S	610	GAGCCTCCAGTGCTGAGTGGAGACTTCTCACCAGGACTCTAGCATCACCA	5	-	78707539-78707581:78708404-78708410	5q24	Rattus norvegicus alpha-2u globulin PGCL1 (LOC259246), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]	MGC124936; MGC112596	MGC124936; MGC112596
Rattus norvegicus	RefSeq	GI_62652186-S	ILMN_56580	LOC503142	XM_578663.1	XM_578663.1		503142	62652186	XM_578663.1	LOC503142	XP_578663.1	ILMN_1352947	0002030008	S	110	CCGGGAGCAAGTCATGGACCGCTTCCTGGGATTTGTCAAGCAGATTCGGA					PREDICTED: Rattus norvegicus similar to novel protein similar to vertebrate glutamate receptor interacting protein 1 (GRIP1) (LOC503142), mRNA.					
Rattus norvegicus	RefSeq	GI_51556224-A	ILMN_278302	DNMT3A	NM_001003957.1	NM_001003957.1		444984	51556264	NM_001003957.1	Dnmt3a	NP_001003957.1	ILMN_1376824	0002120504	S	3243	CAGCTGAGGTGGTCGGAACCTGGGGAAGCGGAGTGTGGAATTTATCCAGA	6	+	26878630-26878679	6q14	Rattus norvegicus DNA methyltransferase 3A (Dnmt3a), transcript variant 2, mRNA.	A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence ISS]; Repression of transcription by methylation of DNA, leading to the formation of heterochromatin [goid 6346] [evidence ISS]; Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself [goid 6349] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule [goid 10424] [evidence IDA]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt [goid 46499] [evidence IDA]; The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine [goid 3886] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters [goid 45322] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpG [goid 51718] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine [goid 3886] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC109195	MGC109195
Rattus norvegicus	RefSeq	GI_62655637-S	ILMN_279154	RGD1564938_PREDICTED	XM_001078444.1	XM_001078444.1		497857	109489664	XM_001078444.1	RGD1564938_predicted	XP_001078444.1	ILMN_1354598	0002350500	S	861	ACACGGAGAGCTGAGGTGGCAAACGGACTCATGCTTAGGCTTTTCCCGTC				10q11	PREDICTED: Rattus norvegicus similar to MYLE protein (Dexamethasone-induced protein) (predicted) (RGD1564938_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646337-S	ILMN_272171	RGD1564090_PREDICTED	XM_001070983.1	XM_001070983.1		296354	109471274	XM_001070983.1	RGD1564090_predicted	XP_001070983.1	ILMN_1363591	0001240195	S	985	CTTCACGCAGGTGCCCTCCAATAAACAGAGCCTTCCTGACATCATTTGCT				3q42	PREDICTED: Rattus norvegicus similar to seminal vesicle secretion 3 (predicted) (RGD1564090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865969-A	ILMN_291012	RANGAP1	NM_001012199.1	NM_001012199.1		362965	58865969	NM_001012199.1	Rangap1	NP_001012199.1	ILMN_1376310	0003800605	S	1813	AAGCCCAATGGTGCACTGGAATCCTGCTCCTTTGCCCGCCACAGTCTGCT	7	-	120056428-120056476:120056659-120056659	7q34	Rattus norvegicus RAN GTPase activating protein 1 (Rangap1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642538-S	ILMN_69237	RGD1308333_PREDICTED	XM_214733.4	XM_214733.4		292138	109460286	XM_214733.4	RGD1308333_predicted	XP_214733.4	ILMN_1363435	0003440369	S	1665	GGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGC	1	+	265487675-265487724	1q55	PREDICTED: Rattus norvegicus similar to enolase (46.6 kD) (2J223) (predicted) (RGD1308333_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641861-S	ILMN_291480	LOC499315	XR_005457.1	XR_005457.1		499315	109459858	XR_005457.1	LOC499315		ILMN_1359062	0006290136	S	5526	GGAAGCTGATCTCAGAGGTCCTCAAATTGATGTCAAAGGGCCGAGTGTGG	1	+	211680360-211680409	1q43	PREDICTED: Rattus norvegicus AHNAK 1 (LOC499315), misc RNA.					
Rattus norvegicus	RefSeq	GI_47577644-S	ILMN_295791	OLR649	NM_001000640.1	NM_001000640.1		404833	47577644	NM_001000640.1	Olr649	NP_001000640.1	ILMN_1349340	0005900059	S	747	TGGGCCCTGTACTTTCATGTATATGCGACCTGACACTACCTTCTCTGAGG	3	+	72690530-72690579	3q24	Rattus norvegicus olfactory receptor 649 (Olr649), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr649	Olr649
Rattus norvegicus	RefSeq	GI_56090246-A	ILMN_279384	SVS3	NM_001007605.1	NM_001007605.1		192239	56090246	NM_001007605.1	Svs3	NP_001007606.1	ILMN_1376516	0000730364	S	1036	GACTGTCAAAATCTCCAAGTTCCTATTGGCTTTGGTGCTTGGATGGCATC	3	+	155232897-155232946	3q42	Rattus norvegicus seminal vesicle secretion 3 (Svs3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]	The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643430-S	ILMN_70189	NARG1_PREDICTED	XM_241375.4	XM_241375.4		310399	109464731	XM_241375.4	Narg1_predicted	XP_241375.3	ILMN_1352365	0000840170	S	4027	GGCCTTGTTCACGATATGCAGAAAAAGTGCTGCAGTTTAGATACCTCTGG	2	+	140369620-140369669	2q26	PREDICTED: Rattus norvegicus NMDA receptor-regulated gene 1 (predicted) (Narg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742659-A	ILMN_299909	NAP1L1	NM_053561.2	NM_053561.2		89825	77404362	NM_053561.2	Nap1l1	NP_446013.2	ILMN_1376543	0006220497	S	1296	TGACCCAAAGAAGGATCAAAACCCAGCCGAGTGCAAGCAGCAGTGAGCAG	7	+	50528702-50528711:50529377-50529412:50529413-50529416	7q21	Rattus norvegicus nucleosome assembly protein 1-like 1 (Nap1l1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72278	MGC72278
Rattus norvegicus	RefSeq	GI_12018263-S	ILMN_273103	CNBP	NM_022598.1	NM_022598.1		64530	12018263	NM_022598.1	Cnbp	NP_072120.1	ILMN_1362936	0007100059	S	1244	GGAGCATCTTCATCCCAGTGTTGATGCTGGACGTACAGAAGGTGATGGCA	4	-	122033385-122033434	4q34	Rattus norvegicus CCHC-type zinc finger, nucleic acid binding protein (Cnbp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IDA]; Interacting selectively with single-stranded RNA [goid 3727] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cnbp; Znf9	Cnbp; Znf9
Rattus norvegicus	RefSeq	GI_20302128-S	ILMN_264049	ZC3H14	NM_001033951.1	NM_001033951.1		192359	76880452	NM_001033951.1	Zc3h14	NP_001029123.1	ILMN_1365742	0002570541	S	2280	GGATTCGACCTCAAACCAGTGAATGATGCCCTAGTCCTACCTGGCAGAAG	6	+	122955970-122956019	6q32	Rattus norvegicus zinc finger CCCH type containing 14 (Zc3h14), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105318	MGC105318
Rattus norvegicus	RefSeq	GI_6981371-S	ILMN_294062	PLIN	NM_013094.1	NM_013094.1		25629	6981371	NM_013094.1	Plin	NP_037226.1	ILMN_1374760	0004200504	S	1805	GGCATCCTTGGGGCTTGACCATCACAGTCAGGTTTTAAGGGGCACCGAGC	1	-	135497658-135497707	1q31	Rattus norvegicus perilipin (Plin), mRNA.	Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IDA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IEA]; A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. A droplet of triacylglycerol surrounded by a monolayer of phospholipids, interacting with the triacylglycerols and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins [goid 12511] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	PERIA	PERIA
Rattus norvegicus	RefSeq	GI_62659307-S	ILMN_271305	PCTK3	XM_001059896.1	XM_001059896.1		289019	109498618	XM_001059896.1	Pctk3	XP_001059896.1	ILMN_1371716	0001770647	S	1772	GTGGCCAGTCTGGAGGACCACTCAGCAGCCCTGTTGGTAGCATTTGCTTC				13q13	PREDICTED: Rattus norvegicus PCTAIRE-motif protein kinase 3 (Pctk3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659721-S	ILMN_281740	LOC498279	XM_001053627.1	XM_001053627.1		498279	109499022	XM_001053627.1	LOC498279	XP_001053627.1	ILMN_1351139	0001980484	S	570	CATGATTGACGTGGCTGTGCTACCTCCGTGCTTCTGGAACTAGCTGACCT					PREDICTED: Rattus norvegicus similar to High affinity immunoglobulin epsilon receptor gamma-subunit precursor (FceRI gamma) (IgE Fc receptor gamma-subunit) (Fc-epsilon RI-gamma) (LOC498279), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34876625-S	ILMN_64639	LOC301448	XM_217410.2	XM_217410.2		301448	34876625	XM_217410.2	LOC301448	XP_217410.1	ILMN_1360378	0003780075	S	3482	GCTGACCAGATTGCAACCACTTTACCGAGACACAGGTACTGAGGGCTCTG					PREDICTED: Rattus norvegicus hypothetical LOC301448 (LOC301448), mRNA.					
Rattus norvegicus	RefSeq	GI_62644420-S	ILMN_300940	MANBA	NM_001031655.1	NM_001031655.1		310864	72255542	NM_001031655.1	Manba	NP_001026825.1	ILMN_1355149	0004200025	S	3302	GGGGCAGAGGCAGGAGGATCACAAGTTCAAAGTTGGCCCTGACTACACTG	2	+	233077425-233077474	2q43	Rattus norvegicus mannosidase, beta A, lysosomal (Manba), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence ISS]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IDA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IDA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IEA]; Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]	MGC116230; MGC125196	MGC116230; MGC125196
Rattus norvegicus	RefSeq	GI_62644418-S	ILMN_300940	MANBA	NM_001031655.1	NM_001031655.1		310864	72255542	NM_001031655.1	Manba	NP_001026825.1	ILMN_1358947	0004670148	S	854	AAATTAGGAAGGACGTCACCGTGGAGACCTGGTGGCCTCATGGACATGGG	2	+	233017374-233017384:233018821-233018859	2q43	Rattus norvegicus mannosidase, beta A, lysosomal (Manba), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence ISS]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IDA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IDA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IEA]; Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides [goid 4567] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]	MGC116230; MGC125196	MGC116230; MGC125196
Rattus norvegicus	RefSeq	GI_62657343-S	ILMN_266275	NUP85	NM_001025401.1	NM_001025401.1		287830	70794785	NM_001025401.1	Nup85	NP_001020572.1	ILMN_1364997	0007000026	S	1859	AGAGTGTGGTGAGCCCGACGCCCAGCGACTGCAGGATGACGACATAGAGA	10	+	105664583-105664616:105664897-105664912	10q32.3	Rattus norvegicus nucleoporin 85kDa (Nup85), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; The movement of a macrophage in response to an external stimulus [goid 48246] [evidence ISS]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47576642-S	ILMN_268144	OLR1687	NM_001000508.1	NM_001000508.1		309574	47576642	NM_001000508.1	Olr1687	NP_001000508.1	ILMN_1354524	0002120168	S	450	GGCAATTGTTTCATGGGGAACAGGTTGCATTGTGGGGTTGGGACAAACCA	20	+	429379-429428	20p12	Rattus norvegicus olfactory receptor 1687 (Olr1687), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742619-S	ILMN_284282	OPN1SW	NM_031015.1	NM_031015.1		81644	25742619	NM_031015.1	Opn1sw	NP_112277.1	ILMN_1369906	0001500278	S	1402	GCTTGGCATGGGGCAGTGTGAAGAAAAAGCAGCAGACACCAAACACCTGC	4	-	56257028-56257077	4q22	Rattus norvegicus opsin 1 (cone pigments), short-wave-sensitive (Opn1sw), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation [goid 9881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666170-S	ILMN_61558	LOC502435	XM_577916.1	XM_577916.1		502435	62666170	XM_577916.1	LOC502435	XP_577916.1	ILMN_1358135	0000610324	S	590	TTCTGGTGTCAAGGAGCACGAGGGTGTCCAGGATTTTGCAACTGGCTGCC					PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC67567 (LOC502435), mRNA.					
Rattus norvegicus	RefSeq	GI_6981037-S	ILMN_302027	HOXA2	NM_012581.1	NM_012581.1		24452	6981037	NM_012581.1	Hoxa2	NP_036713.1	ILMN_1372469	0002900068	S	1350	CGCCTTTGGCCAGGTGCTTTGCCTTCTTTTATTCCGGGAGTTGATTTTCG	4	-	80462888-80462937	4q24	Rattus norvegicus homeo box A2 (Hoxa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes [goid 7379] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21568] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 3 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21569] [evidence ISS]; The process by which the anatomical structure of rhombomere 3 is generated and organized. Morphogenesis pertains to the creation of form. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order [goid 21658] [evidence ISS]; Division of the brain into a series of semi-repetitive parts or segments [goid 35284] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence IEA]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; The process by which the anatomical structures of viscerocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The viscerocranium is the part of the skull comprising the facial bones [goid 48703] [evidence IEA]; The process by which the anatomical structures of viscerocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The viscerocranium is the part of the skull comprising the facial bones [goid 48703] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]	RATHOX111A; Hoxa11	RATHOX111A; Hoxa11
Rattus norvegicus	RefSeq	GI_16758105-S	ILMN_279324	IL18BP	NM_053374.1	NM_053374.1		84388	16758105	NM_053374.1	Il18bp	NP_445826.1	ILMN_1355834	0005690601	S	277	CTTCAGCATCCTCTACTGGCTGGGCAATGGCTCCTTCATTGAGCACCTCC	1	-	159472378-159472427	1q32	Rattus norvegicus interleukin 18 binding protein (Il18bp), mRNA.		An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [evidence ISS]	Interacting selectively with interleukin-18 [goid 42007] [evidence ISS]	Igifbp	Igifbp
Rattus norvegicus	RefSeq	GI_23097355-S	ILMN_279281	SLC4A9	NM_152938.1	NM_152938.1		266612	23097355	NM_152938.1	Slc4a9	NP_690921.1	ILMN_1367206	0004730022	S	2928	CAGACACAAGGTGCCAGAGAGATGATTCAGCAGTCAAGAGCGCATGCAGC	18	+	29179499-29179506:29182494-29182535	18p11	Rattus norvegicus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (Slc4a9), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IDA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA];  [goid 15380] [evidence IDA]	Ae4	Ae4
Rattus norvegicus	RefSeq	GI_16758299-S	ILMN_289744	ENPP1	NM_053535.1	NM_053535.1		85496	16758299	NM_053535.1	Enpp1	NP_445987.1	ILMN_1365255	0002970022	S	2622	GCTCATCACGGGTCTCAGCTTCTACCAGGACCGACAGGAGTCAGTTTCAG	1	+	21287312-21287361	1p12	Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 1 (Enpp1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence ISS]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; The directed movement of inorganic diphosphate into, out of, within or between cells [goid 30505] [evidence ISS]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence ISS]; The process of binding or confining any triester of glycerol such that it is separated from other components of a biological system [goid 30730] [evidence ISS]; Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues [goid 31953] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of adipocyte differentiation [goid 45599] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of adipocyte differentiation [goid 45599] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 45719] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46325] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence ISS]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence ISS]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]; The chemical reactions and pathways involving 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems [goid 50427] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides [goid 4551] [evidence ISS]; Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Catalysis of the reaction: H2O + a nucleoside triphosphate = pyrophosphate + a nucleotide [goid 47429] [evidence ISS]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the sequential hydrolytic removal of 5'-nucleotides from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides [goid 4528] [evidence IEA]; Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides [goid 4551] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Pc1; Npps	Pc1; Npps
Rattus norvegicus	RefSeq	GI_62643396-S	ILMN_68617	LOC499605	XM_574931.1	XM_574931.1		499605	62643396	XM_574931.1	LOC499605	XP_574931.1	ILMN_1354704	0004120180	S	655	GAGAGTGAAGACTCCCAGCTCAAAGGACCATACAATTCATTTCAGGAACA					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499605), mRNA.					
Rattus norvegicus	RefSeq	GI_62657378-S	ILMN_291237	ST6GALNAC2	NM_001031652.1	NM_001031652.1		303692	72535131	NM_001031652.1	St6galnac2	NP_001026822.1	ILMN_1351759	0006760358	S	1753	CAAACTGCAAGGTGGTATGTCTGGTGGGAAGGGCTGTGGTGGCACTCAGG	10	-	106793320-106793369	10q32.3	Rattus norvegicus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 (St6galnac2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	MGC124782; Siat7b	MGC124782; Siat7b
Rattus norvegicus	RefSeq	GI_62651778-S	ILMN_264294	POLRMT_PREDICTED	XM_001074109.1	XM_001074109.1		299604	109481537	XM_001074109.1	Polrmt_predicted	XP_001074109.1	ILMN_1367417	0007050301	S	3444	TGCGCCTGCACAGCGAACCCATTCTGGAAGACCTGGCTAAGTTCCTGGAG				7q11	PREDICTED: Rattus norvegicus polymerase (RNA) mitochondrial (DNA directed) (predicted) (Polrmt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643789-S	ILMN_65047	LOC295247	XM_227418.3	XM_227418.3		295247	62643789	XM_227418.3	LOC295247	XP_227418.3	ILMN_1356944	0005700332	S	2967	CCCTTCTGTGGGAAGAAAGAGGGGGGCAGGGGCAGAACCCTAAAGAACTC				2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32934 (LOC295247), mRNA.					
Rattus norvegicus	RefSeq	GI_62642944-S	ILMN_69148	LOC499531	XM_574855.1	XM_574855.1		499531	62642944	XM_574855.1	LOC499531	XP_574855.1	ILMN_1362603	0001990020	S	916	GACCCTAAGAGAACACAAATGCCAGCCCAGGTTACTGTATCCTGCAAAGC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499531), mRNA.					
Rattus norvegicus	RefSeq	GI_62661803-S	ILMN_61994	KLF12_PREDICTED	XM_224461.3	XM_224461.3		306110	62661803	XM_224461.3	Klf12_predicted	XP_224461.3	ILMN_1357894	0006290152	S	1157	GCGAAGCATCTCTGGTTCCTCAGGCATGTGGGTTTAGCTCTGAACTGGCG				15q21	PREDICTED: Rattus norvegicus Kruppel-like factor 12 (predicted) (Klf12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642416-A	ILMN_286164	RGD1309313	NM_001014030.1	NM_001014030.1		309454	62078790	NM_001014030.1	RGD1309313	NP_001014052.1	ILMN_1376945	0002640075	S	1720	AGCTCCTGTAGGGCAGGAAGAAAGGACCAGAAAGGGCAGGACTGAGTGCG	1	+	251590602-251590651	1q54	Rattus norvegicus similar to RIKEN cDNA 4930538D17 (RGD1309313), mRNA.					
Rattus norvegicus	RefSeq	GI_51948461-S	ILMN_274117	ESAM	NM_001004245.1	NM_001004245.1		300519	51948461	NM_001004245.1	Esam	NP_001004245.1	ILMN_1351676	0004670091	S	1521	ATGAAGCCAGATGAATGCTGCTGAGATTGGCTACCCTCCAAGGGCTCTGG	8	+	38784063-38784112	8q21	Rattus norvegicus endothelial cell adhesion molecule (Esam), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94065	MGC94065
Rattus norvegicus	RefSeq	GI_23463292-S	ILMN_301800	RBM45	NM_153306.1	NM_153306.1		266631	23463292	NM_153306.1	Rbm45	NP_695218.1	ILMN_1374227	0005550273	S	1364	GAGCGCCAATGACGCCATCACAACTCTGCACGGGAAGATTCTAAATGGGG	3	+	59070340-59070389	3q23	Rattus norvegicus RNA binding motif protein 45 (Rbm45), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656913-S	ILMN_54556	NPEPPS	XM_340889.3	XM_340889.3		50558	109488859	XM_340889.3	Npepps	XP_340890.1	ILMN_1364406	0000050270	S	3775	TTCCGAACAGTATCGGCGAGCTCTGGCTCACCACTTGTGCATGTGAGGGG	10	-	85928142-85928191	10q31	PREDICTED: Rattus norvegicus aminopeptidase puromycin sensitive (Npepps), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13786135-S	ILMN_267298	PDGFC	NM_031317.1	NM_031317.1		79429	13786135	NM_031317.1	Pdgfc	NP_112607.1	ILMN_1367568	0003170273	S	1037	AACTGCAACCTTCACGGCAGCACTCATCTGCACTGGCATTCTGCGTCCCC	2	+	172810925-172810926:172810927-172810974	2q33	Rattus norvegicus platelet derived growth factor C (Pdgfc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity [goid 7171] [evidence ISS]; Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity [goid 7171] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]	Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence ISS]; Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	SCDGF	SCDGF
Rattus norvegicus	RefSeq	GI_47577830-S	ILMN_295636	OLR1206	NM_001000816.1	NM_001000816.1		405103	47577830	NM_001000816.1	Olr1206	NP_001000816.1	ILMN_1354304	0005290273	S	405	GTCTCGCCAGGTCTGCCTCCTGATGACAATGGGTGTATATGTGATGGGCT	8	+	39422111-39422160	8q21	Rattus norvegicus olfactory receptor 1206 (Olr1206), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1206	Olr1206
Rattus norvegicus	RefSeq	GI_62653480-S	ILMN_264779	RPUSD4	NM_001025284.1	NM_001025284.1		315550	70608134	NM_001025284.1	Rpusd4	NP_001020455.1	ILMN_1355121	0002630725	S	1613	GAGTGAAGCTGGCAGGGTGGAAGGCAGCGGACAACAGACCAAACTCAAGC	8	+	35058553-35058602	8q21	Rattus norvegicus RNA pseudouridylate synthase domain containing 4 (Rpusd4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs [goid 1522] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5 [goid 9982] [evidence IEA]	MGC116175; RGD1311268	MGC116175; RGD1311268
Rattus norvegicus	RefSeq	GI_62644233-S	ILMN_65756	EXTL2	XM_227614.4	XM_227614.4		310803	109465488	XM_227614.4	Extl2	XP_227614.4	ILMN_1357905	0006860072	S	1703	GCCGTCAGTGCTGGTGTTTTTGCTGTTATGCCTGTCGTGACTGGGAGTGT	2	+	212183467-212183516	2q41	PREDICTED: Rattus norvegicus exostoses (multiple)-like 2 (Extl2), mRNA.		The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence IEA]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence ISS]; The chemical reactions and pathways involving UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate [goid 19276] [evidence IEA]; The chemical reactions and pathways involving UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate [goid 19276] [evidence ISS]	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-glucuronosyl-(1,3)-beta-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-D-xylosyl-proteoglycan = UDP + alpha-N-acetyl-D-glucosaminyl-(1,4)-beta-D-glucuronosyl-(1,3)-beta-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-D-xylosyl-proteoglycan [goid 1888] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-glucuronosyl-(1,3)-beta-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-D-xylosyl-proteoglycan = UDP + alpha-N-acetyl-D-glucosaminyl-(1,4)-beta-D-glucuronosyl-(1,3)-beta-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-D-xylosyl-proteoglycan [goid 1888] [evidence ISS]; Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an acceptor molecule, forming an alpha-1,4 linkage [goid 35248] [evidence IEA]; Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an acceptor molecule, forming an alpha-1,4 linkage [goid 35248] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646056-S	ILMN_291994	SRXN1	XM_001058481.1	XM_001058481.1		296271	109471024	XM_001058481.1	Srxn1	XP_001058481.1	ILMN_1362254	0005900673	S	417	CAGGTGCAACGGCCACCTCAACCTTGCAGACGAAAACCCAAGGCTCATCC				3q41	PREDICTED: Rattus norvegicus sulfiredoxin 1 homolog (S. cerevisiae) (Srxn1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_6981451	ILMN_59502	RAB3A	NM_013018.2	NM_013018.2		25531	61098194	NM_013018.2	Rab3a	NP_037150.2	ILMN_1650730	0004570100	S	711	CAAGCAGGGCCCACAGCTCACCGACCAGCAGGCACCACCTCATCAGGATT	16	-	19190383-19190432	16p14	Rattus norvegicus RAB3A, member RAS oncogene family (Rab3a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]	A organ system process carried out by any of the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange [goid 3016] [evidence IEA]; A organ system process carried out by any of the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange [goid 3016] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence ISS]; Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence IEA]; Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence ISS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31630] [evidence IEA]; Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31630] [evidence ISS]; The process by which a neuronal cell maintains the organization and the arrangement of proteins at the active zone to ensure the fusion and dock of vesicles and the release of neurotransmitters [goid 48790] [evidence IEA]; The process by which a neuronal cell maintains the organization and the arrangement of proteins at the active zone to ensure the fusion and dock of vesicles and the release of neurotransmitters [goid 48790] [evidence ISS]; The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach) [goid 50975] [evidence IEA]; The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach) [goid 50975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus [goid 51602] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus [goid 51602] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	RAB3	RAB3
Rattus norvegicus	RefSeq	GI_62652194-S	ILMN_57038	IRAK3_PREDICTED	XM_235183.4	XM_235183.4		314870	109480603	XM_235183.4	Irak3_predicted	XP_235183.4	ILMN_1361037	0002450671	S	1741	GCAACATGCCCAGTTCTTCTTGTGAGGAATGCTGGTGCCCAGAGCTTGCG	7	-	59409344-59409393	7q22	PREDICTED: Rattus norvegicus interleukin-1 receptor-associated kinase 3 (predicted) (Irak3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34876854-A	ILMN_50455	IHH	XM_576589.2	XM_576589.2		84399	109486160	XM_576589.2	Ihh	XP_576589.2	ILMN_1376776	0000450673	S	758	CTGGGTGTATTACGAGTCCAAGGCCCACGTTCATTGCTCTGTCAAGTCTG	9	-	74288579-74288579:74290128-74290176	9q33	PREDICTED: Rattus norvegicus Indian hedgehog homolog, (Drosophila) (Ihh), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IDA]; The removal of an internal amino acid sequence (an intein) from a protein during protein maturation; the excision of inteins is precise and the N- and C-terminal exteins are joined by a normal peptide bond. Protein splicing involves 4 nucleophilic displacements by the 3 conserved splice junction residues [goid 16539] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation [goid 32332] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50657405-S	ILMN_280500	SENP17	NM_001002833.1	NM_001002833.1		408216	50657405	NM_001002833.1	Senp17	NP_001002833.1	ILMN_1349334	0001400091	S	305	AGACTGTAGTTGAGAAGTTGGCTGAGGGTGGCAAGTGTCGTAAGCGGCAA	4	-	164738347-164738396	4q42	Rattus norvegicus Sumo1/sentrin/Smt3 specific protease 17 (Senp17), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence TAS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence TAS]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656630-S	ILMN_280865	RGD1306595	NM_001025626.1	NM_001025626.1		287554	71043743	NM_001025626.1	RGD1306595	NP_001020797.1	ILMN_1374611	0005080075	S	921	AGGGAGCTAGTGAAGCAGTTCCTCTCTGAGTCTGTGCTGAAGGAGCAGCC	10	-	68341554-68341603	10q26	Rattus norvegicus similar to hypothetical protein (RGD1306595), mRNA.				MGC112833	MGC112833
Rattus norvegicus	RefSeq	GI_62641617-S	ILMN_49497	LRDD_PREDICTED	XM_219485.4	XM_219485.4		293625	109459599	XM_219485.4	Lrdd_predicted	XP_219485.3	ILMN_1350788	0003520088	S	2806	CAGAACCCAGAGTCTGCACAGGCCTAGGCTTACAGACTTAAGATAGCCTT	1	-	201626517-201626540:201626541-201626566	1q41	PREDICTED: Rattus norvegicus leucine-rich and death domain containing (predicted) (Lrdd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651196-S	ILMN_51821	CLMN_PREDICTED	XM_234500.3	XM_234500.3		299285	62651196	XM_234500.3	Clmn_predicted	XP_234500.3	ILMN_1353261	0004120100	S	3219	ACACACCAGGCTGTCTATGACTGGCACCAACTCCTCTGGAGAAGCCGTGC				6q32	PREDICTED: Rattus norvegicus calmin (predicted) (Clmn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660003-S	ILMN_62429	LOC498315	XM_579812.1	XM_579812.1		498315	62660003	XM_579812.1	LOC498315	XP_579812.1	ILMN_1362547	0001230368	S	1549	TTGGAAGGCAGCTATGCTCACCACTATACCACCAACGCCGCACAGCCGGA					PREDICTED: Rattus norvegicus LOC498315 (LOC498315), mRNA.					
Rattus norvegicus	RefSeq	GI_62642184-S	ILMN_52776	RGD1560354_PREDICTED	XM_574655.2	XM_574655.2		499345	109460057	XM_574655.2	RGD1560354_predicted	XP_574655.2	ILMN_1350182	0005050035	S	1194	ACAACCAGAGTCGCCCTCCCTTGTATGACCTGACTGCCATGAAGGTGCCC	1	+	237945738-237945745:237948572-237948613	1q52	PREDICTED: Rattus norvegicus similar to lipase-like, ab-hydrolase domain containing 3 (predicted) (RGD1560354_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666228	ILMN_64132	LOC502463	XM_577944.1	XM_577944.1		502463	62666228	XM_577944.1	LOC502463	XP_577944.1	ILMN_1650085	0002100736	S	594	ACCGATGGCTGCTGCAGGAGAGACAGCGATTCAAGCATACGATGCAGGAC					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502463), mRNA.					
Rattus norvegicus	RefSeq	GI_9506480-S	ILMN_291058	PSG19	NM_019126.1	NM_019126.1		24256	9506480	NM_019126.1	Psg19	NP_061999.1	ILMN_1370243	0005890487	S	2623	GTGTCCAAGGCTCAGAACATGCCAATGGATCACTGCTCCTTCCGAAAACC	1	-	78125053-78125102	1q21	Rattus norvegicus pregnancy specific glycoprotein 19 (Psg19), mRNA.		The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]		CEAC; Cea3; RATCEAC; MGC114333	CEAC; Cea3; RATCEAC; MGC114333
Rattus norvegicus	RefSeq	GI_62644116-S	ILMN_280372	HIPK1_PREDICTED	XM_001064683.1	XM_001064683.1		365895	109467309	XM_001064683.1	Hipk1_predicted	XP_001064683.1	ILMN_1366014	0005910671	S	4557	GTCTCCTCTTGGAAGTTACTAGCCAGCAGCTCGTTGTTCTGCAGGGGCCC				2q34	PREDICTED: Rattus norvegicus homeodomain interacting protein kinase 1 (predicted) (Hipk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661120-S	ILMN_60553	LOC498452	XM_573711.1	XM_573711.1		498452	62661120	XM_573711.1	LOC498452	XP_573711.1	ILMN_1350992	0003940333	S	500	ACTCAGGTGACAGCAGATGCGGGCGAGGATGTGGAGAAAGAGGAACACTC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC498452), mRNA.					
Rattus norvegicus	RefSeq	GI_62649726-S	ILMN_67064	HDAC1_PREDICTED	XM_216349.3	XM_216349.3		297893	62649726	XM_216349.3	Hdac1_predicted	XP_216349.2	ILMN_1357565	0002690082	S	1775	GGATGGCCTTGTTAAGCTTTTCAGCAGGGGGCGACTGTGTCTTCTGGGGC				5q36	PREDICTED: Rattus norvegicus histone deacetylase 1 (predicted) (Hdac1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865961-A	ILMN_291834	RNF41	NM_001012195.1	NM_001012195.1		362814	58865961	NM_001012195.1	Rnf41	NP_001012195.1	ILMN_1376950	0006020164	S	960	GACATGGTGCAGGAGCCGGGGCTGGTCATGATCTTTGCACATGGTGTGGA	7	+	1724868-1724917	7q11	Rattus norvegicus ring finger protein 41 (Rnf41), mRNA.					
Rattus norvegicus	RefSeq	GI_13592040-S	ILMN_273547	RBL2	NM_031094.1	NM_031094.1		81758	13592040	NM_031094.1	Rbl2	NP_112356.1	ILMN_1360394	0003710494	S	4735	CAGCTGACAACCTACAGCCTGGCACTGGCCACCAGAGTGCTGTGCAAAGT	19	-	17045206-17045255	19p11	Rattus norvegicus retinoblastoma-like 2 (Rbl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; Any process that modulates the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid [goid 43550] [evidence ISS]; Any process that modulates the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid [goid 43550] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Rb2	Rb2
Rattus norvegicus	RefSeq	GI_34857073	ILMN_49506	LOC366107	XM_345386.1	XM_345386.1		366107	34857073	XM_345386.1	LOC366107	XP_345387.1	ILMN_1649921	0005670066	S	489	GGCCAGTGTCCTACCCTCAGAGCAAGAGAGCAGCAAAAGGCCGTATCGGA					PREDICTED: Rattus norvegicus similar to remodeling and spacing factor 1 (LOC366107), mRNA.					
Rattus norvegicus	RefSeq	GI_57114227-S	ILMN_266545	V1RG4	NM_001008908.1	NM_001008908.1		494260	57114227	NM_001008908.1	V1rg4	NP_001008908.1	ILMN_1368546	0004480487	S	630	CTCTGATGGACTGTGTCTCAGTCTCATGGCATATTCAAGTGTCTCCATGG	7	+	15667790-15667839	7q12	Rattus norvegicus vomeronasal 1 receptor, G4 (V1rg4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718002-S	ILMN_271795	LOC689667	XM_001055155.1	XM_001055155.1		689667	109513960	XM_001055155.1	LOC689667	XP_001055155.1	ILMN_1364523	0001500435	S	559	GAGAGTGTGACTTCTCACCACAGTGTCTATGCATCTTTAGAAGGCTCTGG	Un|NW_047990.1	-	850933-850982		PREDICTED: Rattus norvegicus hypothetical protein LOC689667 (LOC689667), mRNA.					
Rattus norvegicus	RefSeq	GI_62643835-S	ILMN_67480	LOC499659	XM_574983.1	XM_574983.1		499659	62643835	XM_574983.1	LOC499659	XP_574983.1	ILMN_1364692	0000460397	S	1247	TCAGTGTTCCAGATGCTCAGTGGGAATCGTAGCTCTTATCTACCCTGTGC					PREDICTED: Rattus norvegicus similar to LOC284861 protein (LOC499659), mRNA.					
Rattus norvegicus	RefSeq	GI_62651523-S	ILMN_68209	LOC503082	XM_578602.1	XM_578602.1		503082	62651523	XM_578602.1	LOC503082	XP_578602.1	ILMN_1351174	0002230332	S	310	CCCTGATACCACCTCCAAGGCACTCCACATCCAAGTTGAAAGCTCAGGAG					PREDICTED: Rattus norvegicus similar to Ig heavy chain (LOC503082), mRNA.					
Rattus norvegicus	RefSeq	GI_56961660-S	ILMN_298416	BAG5	NM_001008526.2	NM_001008526.2		366734	56961660	NM_001008526.2	Bag5	NP_001008526.1	ILMN_1349701	0005130463	S	1927	GCCGGATGGGTCCTGCCTAATTTTAATGGGTGGGGTTTTTGTTTGGATGG	6	-	136491475-136491524	6q32	Rattus norvegicus BCL2-associated athanogene 5 (Bag5), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95040	MGC95040
Rattus norvegicus	RefSeq	GI_62078868-S	ILMN_297994	HPDL	NM_001014068.1	NM_001014068.1		313521	62078868	NM_001014068.1	Hpdl	NP_001014090.1	ILMN_1359743	0002350270	S	1307	CACTATGGCAGTCGGTGCAAGAGGAAGCTGCCAGGGCTCAGGGAACCTAA	5	-	137116628-137116628:137116629-137116677	5q36	Rattus norvegicus 4-hydroxyphenylpyruvate dioxygenase-like (Hpdl), mRNA.		The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9072] [evidence IEA]	Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2 [goid 3868] [evidence IEA]	RGD1310014	RGD1310014
Rattus norvegicus	RefSeq	GI_51948519-S	ILMN_272360	MGC94192	NM_001004272.1	NM_001004272.1		360550	51948519	NM_001004272.1	MGC94192	NP_001004272.1	ILMN_1357504	0006020112	S	1345	CTGTCCAGTGAACCCTCCACCCTTTTCACTTTCAGGGCCAGGGCTCAAAC	10	+	56845805-56845854	10q24	Rattus norvegicus similar to PHD zinc finger containing protein JUNE1 (MGC94192), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649106-S	ILMN_57584	LOC298120	XM_216425.3	XM_216425.3		298120	62649106	XM_216425.3	LOC298120	XP_216425.3	ILMN_1366046	0002900142	S	4750	TGAGTTTGCAGGCCCACTGCTTCTTTCTGCTACTTGTGGGTCACTACAGG					PREDICTED: Rattus norvegicus similar to astrotactin 2 isoform b (LOC298120), mRNA.					
Rattus norvegicus	RefSeq	GI_40786484-S	ILMN_275372	GALNT11	NM_199393.1	NM_199393.1		311952	40786484	NM_199393.1	Galnt11	NP_955425.1	ILMN_1359642	0002260519	S	2091	CAGGGCAGCCATCTCAGGGTCTTCACTGGAATTGGTTAATTTCCGGGCTG	4	-	5242238-5242287	4q11	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) (Galnt11), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62414281-S	ILMN_278062	PCDHB22	XM_001056235.1	XM_001056235.1		307486	109506500	XM_001056235.1	Pcdhb22	XP_001056235.1	ILMN_1371724	0003840673	S	2140	TGCCAGAGGTGGTGCGCGACCCCAGTGACCAAGATGAGGACGTGCTCACT	18	+	30329397-30329446	18p11	PREDICTED: Rattus norvegicus protocadherin beta 22 (Pcdhb22), mRNA.					
Rattus norvegicus	RefSeq	GI_54400717-S	ILMN_289601	GHITM	NM_001005908.1	NM_001005908.1		290596	54400717	NM_001005908.1	Ghitm	NP_001005908.1	ILMN_1374343	0004570411	S	1154	GGAAGCAACAGAAAGAAATGAATGACGGCTGTGGTGCCTCTGCTCGCTGG	16	-	13327505-13327534:13327535-13327554	16p14	Rattus norvegicus growth hormone inducible transmembrane protein (Ghitm), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94737	MGC94737
Rattus norvegicus	RefSeq	GI_47576722-S	ILMN_265382	OLR841	NM_001000405.1	NM_001000405.1		298049	47576722	NM_001000405.1	Olr841	NP_001000405.1	ILMN_1366404	0004780373	S	416	GGGTCTGTGTACAGATTGCAAGCAGCTCCTGGGCTACAGGCTGCCTCACT	5	+	70008347-70008396	5q24	Rattus norvegicus olfactory receptor 841 (Olr841), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr841	Olr841
Rattus norvegicus	RefSeq	GI_38454279-S	ILMN_264529	FAM3C	NM_198771.1	NM_198771.1		312159	38454279	NM_198771.1	Fam3c	NP_942066.1	ILMN_1351710	0006380541	S	802	AGCAAGACTGACGGGCACCGGAGGCGAGGACAAACGCACTTCGATTCTGT	4	-	48629407-48629443:48629444-48629456	4q22	Rattus norvegicus family with sequence similarity 3, member C (Fam3c), mRNA.					
Rattus norvegicus	RefSeq	GI_62651422-S	ILMN_283287	RGD1309838_PREDICTED	XM_001062324.1	XM_001062324.1		314539	109480087	XM_001062324.1	RGD1309838_predicted	XP_001062324.1	ILMN_1355513	0002350341	S	2221	GCTGTAAAGCTTGGAAGAGGCTGGAGGGAACTTGCTGAGAAGTCTGCAGG				6q33	PREDICTED: Rattus norvegicus similar to putative binding protein 7a5 (predicted) (RGD1309838_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662412-S	ILMN_273206	RGD1308064_PREDICTED	XM_001070218.1	XM_001070218.1		290645	109503971	XM_001070218.1	RGD1308064_predicted	XP_001070218.1	ILMN_1364790	0003870072	S	889	AGGACATGCTCTACGGCCTTGAAGTGAGGTCTGGGTTGGCCTCAGAAAAC				16p14	PREDICTED: Rattus norvegicus similar to FKSG24 (predicted) (RGD1308064_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649798-S	ILMN_282011	EYA3_PREDICTED	XM_001064052.1	XM_001064052.1		313027	109477406	XM_001064052.1	Eya3_predicted	XP_001064052.1	ILMN_1353450	0001690066	S	1392	CTGGCTAGGAACCGCGCTGAAGTCCTTGCTTCTCATCCAGTCTCGAAAGA				5q36	PREDICTED: Rattus norvegicus eyes absent 3 homolog (Drosophila) (predicted) (Eya3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657007-S	ILMN_60264	LOC497672	XM_579334.1	XM_579334.1		497672	62657007	XM_579334.1	LOC497672	XP_579334.1	ILMN_1353679	0003290451	S	4549	GAAACTCCACCTCTCAAGAGGAGCTCCTTCAGCCTGTTGAATTGGAGAAG				10q32.1	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_012514 (LOC497672), mRNA.					
Rattus norvegicus	RefSeq	GI_62662839-S	ILMN_275929	WHSC1L1_PREDICTED	XM_001062803.1	XM_001062803.1		290831	109504291	XM_001062803.1	Whsc1l1_predicted	XP_001062803.1	ILMN_1358357	0003830121	S	4217	CAGTGTGGGGATGGTGGAGAGTTGGTCATGTGTGACAAAAAAGACTGTCC				16q12.4	PREDICTED: Rattus norvegicus Wolf-Hirschhorn syndrome candidate 1-like 1 (predicted) (Whsc1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653411-S	ILMN_274922	RGD1564154_PREDICTED	XM_001053598.1	XM_001053598.1		300458	109484400	XM_001053598.1	RGD1564154_predicted	XP_001053598.1	ILMN_1360449	0001570139	S	1112	GCAAAGATCCCAGGATTCCAGAATGACGTACCGAGAGAGAAGCGAGAGGC				8q13	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 154 (predicted) (RGD1564154_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661571-S	ILMN_49958	LOC498526	XM_573795.1	XM_573795.1		498526	62661571	XM_573795.1	LOC498526	XP_573795.1	ILMN_1373047	0000510402	S	262	GATCTGGAGAGGGAGAAGATTGACTATGAAGGGATCAAGATCTTACTGTC					PREDICTED: Rattus norvegicus similar to PHD finger protein 11 (LOC498526), mRNA.					
Rattus norvegicus	RefSeq	GI_25453403-S	ILMN_293875	CRABP2	XM_001073561.1	XM_001073561.1		29563	109466993	XM_001073561.1	Crabp2	XP_001073561.1	ILMN_1367834	0000840576	S	486	TGCCAGAGAGGGGCAGACTACCAAAGCTCAGAACCCTTCCATTTGCCTGG				2q34	PREDICTED: Rattus norvegicus cellular retinoic acid binding protein 2 (Crabp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence NAS]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence NAS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence IEA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]	Interacting selectively with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid [goid 1972] [evidence IEA]; Interacting selectively with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid [goid 1972] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence TAS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302058-S	ILMN_300816	PLA1A	NM_138882.1	NM_138882.1		85311	20302058	NM_138882.1	Pla1a	NP_620237.1	ILMN_1361558	0005340273	S	1394	ACTCTTGAGGCAGAGGCCGGAATTTTTCGAGGGCAGTGTGGCAAGGGCTG	11	+	64137030-64137079	11q21	Rattus norvegicus phospholipase A1 member A (Pla1a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ps-pla1	Ps-pla1
Rattus norvegicus	RefSeq	GI_62663392-S	ILMN_51963	RGD1307673_PREDICTED	XM_214448.4	XM_214448.4		291034	109504803	XM_214448.4	RGD1307673_predicted	XP_214448.3	ILMN_1360071	0006550161	S	1120	CATGCCCAGCAGGATAGAGCCCTGACGCAGACCGACAGGAAGATAGAGAC	17	+	26980828-26980877	17p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MDS025 (predicted) (RGD1307673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575860-S	ILMN_269891	SLC37A4	NM_031589.2	NM_031589.2		29573	47575860	NM_031589.2	Slc37a4	NP_113777.2	ILMN_1359078	0000510471	S	1982	GAGGAGGCCACCACTCTCATCAGTACCCTGGGACAAAAGGGAGGAATGTA	8	+	47369883-47369932	8q22	Rattus norvegicus solute carrier family 37 (glucose-6-phosphate transporter), member 4 (Slc37a4), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The process of regulating the proliferation and elimination of neutrophils such that the total number of neutrophils within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1780] [evidence IEA]; The process of regulating the proliferation and elimination of neutrophils such that the total number of neutrophils within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1780] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a myeloid progenitor cell. Myeloid progenitor cells include progenitor cells for any of the myeloid lineages [goid 2318] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a myeloid progenitor cell. Myeloid progenitor cells include progenitor cells for any of the myeloid lineages [goid 2318] [evidence ISS]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence NAS]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways involving lactate, the anion of lactic acid [goid 6089] [evidence IEA]; The chemical reactions and pathways involving lactate, the anion of lactic acid [goid 6089] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; The directed movement of glucose-6-phosphate into, out of, within or between cells. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15760] [evidence IEA]; The directed movement of glucose-6-phosphate into, out of, within or between cells. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15760] [evidence IMP]; The directed movement of glucose-6-phosphate into, out of, within or between cells. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15760] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of chemokine production [goid 32682] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of chemokine production [goid 32682] [evidence ISS]; The stages of blood cell formation that take place after completion of embryonic development [goid 35166] [evidence IEA]; The stages of blood cell formation that take place after completion of embryonic development [goid 35166] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 45730] [evidence IEA]; A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 45730] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence ISS]; Catalysis of the transfer of glucose-6-phosphate from one side of the membrane to the other. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15152] [evidence IMP]; Catalysis of the transfer of glucose-6-phosphate from one side of the membrane to the other. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15152] [evidence IEA]; Catalysis of the transfer of glucose-6-phosphate from one side of the membrane to the other. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15152] [evidence ISS]	G6pt1	G6pt1
Rattus norvegicus	RefSeq	GI_62655876-S	ILMN_59299	LOC287148	XM_213253.3	XM_213253.3		287148	62655876	XM_213253.3	LOC287148	XP_213253.2	ILMN_1358460	0001690193	S	859	TGTCACCACCTGCCTGGCTTCCACATAGCCATAGAGTATCAGCGTCAGCC				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310051D06 (predicted) (LOC287148), mRNA.					
Rattus norvegicus	RefSeq	GI_62657567-S	ILMN_279002	RGD1563888_PREDICTED	XM_001068357.1	XM_001068357.1		360692	109493895	XM_001068357.1	RGD1563888_predicted	XP_001068357.1	ILMN_1370551	0004780692	S	445	CTCAGCCAAGGGGTTAGCAGGAAGCGCAGTCGGCATCTCAAGCTATACGC				11q11	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 16, ERATO Doi 472, expressed (predicted) (RGD1563888_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662599-S	ILMN_301515	LOC680199	XM_001056100.1	XM_001056100.1		680199	109503322	XM_001056100.1	LOC680199	XP_001056100.1	ILMN_1374477	0004150053	S	1176	GTCTTGATGGAAATCTGGGGCAAAGAACTGGGAGCCTCTAGCCAGCCCCC	16	+	36314034-36314035:36315573-36315620	16p11	PREDICTED: Rattus norvegicus hypothetical protein LOC680199 (LOC680199), mRNA.					
Rattus norvegicus	RefSeq	GI_62658576-S	ILMN_277476	AP4M1	NM_001037977.1	NM_001037977.1		304344	83816932	NM_001037977.1	Ap4m1	NP_001033066.1	ILMN_1362140	0005220154	S	1082	TTCACTGGGACCTGCCCCGGGTACAAGGAGGTTCTCAACTCTCTGGCCTT	12	+	17620411-17620460	12q11	Rattus norvegicus adaptor-related protein complex 4, mu 1 subunit (Ap4m1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC156474	MGC156474
Rattus norvegicus	RefSeq	GI_62658834-S	ILMN_267576	DNAH10	XM_001071882.1	XM_001071882.1		117252	109495858	XM_001071882.1	Dnah10	XP_001071882.1	ILMN_1349289	0000610020	S	9162	GAGCAGGCAGAGGGCAGGGTCCCCCAGGATGAGCTAGACTTCTTTCTAAA	12	-	32937924-32937973	12q15	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 10 (Dnah10), mRNA.	Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655835-S	ILMN_292205	RNF151_PREDICTED	XM_001058303.1	XM_001058303.1		302977	109490328	XM_001058303.1	Rnf151_predicted	XP_001058303.1	ILMN_1363741	0002360047	S	474	CTGGCTGCCTTGGAGGGTGAGCAACACAACTGCTACCGTGAGCTACGTGA				10q12	PREDICTED: Rattus norvegicus ring finger protein 151 (predicted) (Rnf151_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657791-S	ILMN_48482	SENP7_PREDICTED	XM_221566.4	XM_221566.4		288167	109493050	XM_221566.4	Senp7_predicted	XP_221566.4	ILMN_1362128	0005050148	S	3456	GTACTTCCACATGACTGGGTGTTGATGGGAGGTAGGCTCTCCCTGGTGCC	11	-	45391742-45391791	11q12	PREDICTED: Rattus norvegicus SUMO1/sentrin specific protease 7 (predicted) (Senp7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078802-S	ILMN_278615	RGD1307509	NM_001014036.1	NM_001014036.1		310348	62078802	NM_001014036.1	RGD1307509	NP_001014058.1	ILMN_1354550	0004760647	S	3003	CAGGTGACAACATTGGAGGGGTGTTGCTGTCCATGGTTTTTGGATCCCAG	2	+	127923025-127923074	2q26	Rattus norvegicus similar to RIKEN cDNA 1700108L22 (RGD1307509), mRNA.					
Rattus norvegicus	RefSeq	GI_62665358-A	ILMN_282944	COX4NB	NM_001012165.1	NM_001012165.1		361425	58865901	NM_001012165.1	Cox4nb	NP_001012165.1	ILMN_1376712	0000840373	S	877	CGGGGCTGTGGAGAGAGAGCTGTGGGCTATCTGGGCTTTGGGTTCTTAGT	19	-	51014029-51014078	19q12	Rattus norvegicus COX4 neighbor (Cox4nb), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]			Noc4; MGC109187	Noc4; MGC109187
Rattus norvegicus	RefSeq	GI_62640907-S	ILMN_279236	RGD1559690_PREDICTED	XM_001062994.1	XM_001062994.1		499204	109462425	XM_001062994.1	RGD1559690_predicted	XP_001062994.1	ILMN_1350720	0001170576	S	2605	CTGCCCTGCTGCTGAGTGCCTTGAAAATGATATGGATGAATGGGTCCCCC				1q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25416 (predicted) (RGD1559690_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393702-S	ILMN_298604	LCAT	NM_017024.1	NM_017024.1		24530	8393702	NM_017024.1	Lcat	NP_058720.1	ILMN_1367035	0003870576	S	1086	TCCCTACAAAGACCCGGTGGCTGCACTCTATGAAGATGGGGACGACACTG	19	-	35781729-35781778	19q12	Rattus norvegicus lecithin cholesterol acyltransferase (Lcat), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence IEA]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IDA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IDA]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + a sterol = a sterol ester + 1-acylglycerophosphocholine [goid 4607] [evidence IDA]; Catalysis of the reaction: phosphatidylcholine + a sterol = a sterol ester + 1-acylglycerophosphocholine [goid 4607] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + a sterol = a sterol ester + 1-acylglycerophosphocholine [goid 4607] [evidence ISS]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with apolipoprotein A-I [goid 34186] [evidence ISS]; Catalysis of the reaction: phosphatidylcholine + a sterol = a sterol ester + 1-acylglycerophosphocholine [goid 4607] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC108718	MGC108718
Rattus norvegicus	RefSeq	GI_62643677	ILMN_285161	TPM3	NM_173111.1	NM_173111.1		117557	29336092	NM_173111.1	Tpm3	NP_775134.1	ILMN_1649963	0004070750	S	1406	ATGTGACCAAATAGGAGAGTGAGACATCTGAGACGCCCCCGCCTCCCAGG	2	+	182324630-182324679	2q34	Rattus norvegicus tropomyosin 3, gamma (Tpm3), transcript variant 2, mRNA.	An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm [goid 2102] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IEA]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Tpm5; TM30nm	Tpm5; TM30nm
Rattus norvegicus	RefSeq	GI_62663940-S	ILMN_62261	LOC498801	XM_579870.1	XM_579870.1		498801	62663940	XM_579870.1	LOC498801	XP_579870.1	ILMN_1370865	0004070180	S	1871	GCAGCTCACATAATCCAGGACGTGAATTTAATGGGTGGCGAAGCTGCGAC					PREDICTED: Rattus norvegicus LOC498801 (LOC498801), mRNA.					
Rattus norvegicus	RefSeq	GI_62639097-S	ILMN_297148	FBXO46	NM_001025642.1	NM_001025642.1		292686	71043715	NM_001025642.1	Fbxo46	NP_001020813.1	ILMN_1366206	0006940435	S	1677	CGGGACCCCCTCTACCGAGATGACCCTTGTAAGCAGTGCCGCAAGAGATA	1	+	78496082-78496131	1q21	Rattus norvegicus F-box protein 46 (Fbxo46), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]		MGC114545	MGC114545
Rattus norvegicus	RefSeq	GI_62650089-S	ILMN_267380	LOC500594	XM_575967.1	XM_575967.1		500594	62650089	XM_575967.1	LOC500594	XP_575967.1	ILMN_1349070	0006590632	S	664	ACAATCACCTACATGCTAAACCCCACGCCCAACGCCGGCAACCACAACCG	5	+	169688837-169688886	5q36	PREDICTED: Rattus norvegicus LRRGT00162 (LOC500594), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164094-S	ILMN_286228	PIR	NM_001009474.1	NM_001009474.1		363465	57164094	NM_001009474.1	Pir	NP_001009474.1	ILMN_1369072	0000510070	S	1118	CATAGTGACACATTCCTTTAGTCCCAGCACTCCAGGGGTCAGACATCGGG	X	-	50865326-50865375	Xq21	Rattus norvegicus pirin (iron-binding nuclear protein) (Pir), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC109484	MGC109484
Rattus norvegicus	RefSeq	GI_27436912-S	ILMN_301068	FXYD3	NM_172317.1	NM_172317.1		116831	27436912	NM_172317.1	Fxyd3	NP_758528.1	ILMN_1361156	0003360315	S	226	AGATGGGCCACCCCTCATCACACCAGGCTCTGCTCACAACTGCTGAGGAT	1	-	86113858-86113862:86113863-86113882:86114014-86114038	1q21	Rattus norvegicus FXYD domain-containing ion transport regulator 3 (Fxyd3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence NAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	MAT8	MAT8
Rattus norvegicus	RefSeq	GI_40254722-S	ILMN_263032	SOAT2	NM_153728.2	NM_153728.2		266770	40254722	NM_153728.2	Soat2	NP_714950.2	ILMN_1374511	0003060725	S	2000	AGCTGGCCACAGGCTCAGTACGGTTTGATTCGAGCACCACCCTCTGTGGA	7	+	140903806-140903855	7q36	Rattus norvegicus sterol O-acyltransferase 2 (Soat2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IDA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]	Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester [goid 4772] [evidence IDA]; Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester [goid 4772] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Acat-2	Acat-2
Rattus norvegicus	RefSeq	GI_27375001-S	ILMN_285477	ZC3HAV1	NM_173045.1	NM_173045.1		252832	27375001	NM_173045.1	Zc3hav1	NP_766633.1	ILMN_1356609	0000870095	S	2094	TGGGAATGAGAGCCCAGGCCACACCAGCTCTGACATCAACTCTGCGTACC	4	-	65858286-65858326:65862460-65862468	4q22	Rattus norvegicus zinc finger CCCH type, antiviral 1 (Zc3hav1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism [goid 50691] [evidence IDA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Zap	Zap
Rattus norvegicus	RefSeq	GI_62649541-S	ILMN_298922	ZFP691_PREDICTED	XM_001073528.1	XM_001073528.1		313548	109477116	XM_001073528.1	Zfp691_predicted	XP_001073528.1	ILMN_1351275	0006660162	S	1102	TCTTGTCACTGGGGCATCAGTCCCCATGGCTTTGGGGGTAGTGCCAGAGA				5q36	PREDICTED: Rattus norvegicus zinc finger protein 691 (predicted) (Zfp691_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557362-S	ILMN_275084	STK19	NM_001013197.1	NM_001013197.1		361800	61557362	NM_001013197.1	Stk19	NP_001013215.1	ILMN_1350014	0004920735	S	1033	CGAGCCAAGGGGATAAGAAGATGGCTGGAGACACTGGAGAAGGAAGCAGA	20	+	4105407-4105456	20p12	Rattus norvegicus serine/threonine kinase 19 (Stk19), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978792-S	ILMN_283779	EDN2	NM_012549.1	NM_012549.1		24324	6978792	NM_012549.1	Edn2	NP_036681.1	ILMN_1355195	0002370500	S	927	CCAGGAGCAACCCCACAGCAGGACACAATTACCTAAGCCACACCTGGAGA	5	+	140747892-140747941	5q36	Rattus norvegicus endothelin 2 (Edn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Disruption of theca cell layer releasing follicular fluid and/or the oocyte [goid 1543] [evidence IDA]; The process by which endothelin modulates the force with which blood passes through the circulatory system. Endothelin is a hormone that is released by the endothelium, and it is a vasoconstrictor [goid 3100] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IGI]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the frequency or rate of heart contraction [goid 10460] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42116] [evidence ISS]; A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure [goid 42310] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IDA]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence ISS]; The movement of a macrophage in response to an external stimulus [goid 48246] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]; Interacting selectively with an endothelin B receptor [goid 31708] [evidence ISS]	Et2	Et2
Rattus norvegicus	RefSeq	GI_62642330-S	ILMN_59000	LOXL4_PREDICTED	XM_239059.4	XM_239059.4		309380	109460145	XM_239059.4	Loxl4_predicted	XP_239059.3	ILMN_1364455	0003190176	S	2177	GAGTCTGGCTGCACAACTGCCACACAGGAGATCCCTACCGACCCAATGCA	1	+	248284370-248284396:248286112-248286134	1q54	PREDICTED: Rattus norvegicus lysyl oxidase-like 4 (predicted) (Loxl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718139-S	ILMN_263553	LOC685300	XM_001057314.1	XM_001057314.1		685300	109513209	XM_001057314.1	LOC685300	XP_001057314.1	ILMN_1350135	0005900397	S	532	CTGGGGAATGTTTAACGCTGGGAGAGAAACATCATCCCCTGGCACTGCCC	Un|NW_047874.1	-	513211-513247:514281-514293		PREDICTED: Rattus norvegicus hypothetical protein LOC685300 (LOC685300), mRNA.					
Rattus norvegicus	RefSeq	GI_62718177-S	ILMN_263553	LOC685300	XM_001057314.1	XM_001057314.1		685300	109513209	XM_001057314.1	LOC685300	XP_001057314.1	ILMN_1369973	0002900390	S	1174	TCTACTGACCTCCTTTGAGGGTGTTGGCCCACTACTAATTGATGTTGCCC	Un|NW_047874.1	-	511385-511434		PREDICTED: Rattus norvegicus hypothetical protein LOC685300 (LOC685300), mRNA.					
Rattus norvegicus	RefSeq	GI_62659605-S	ILMN_58955	LOC304923	XM_222823.4	XM_222823.4		304923	109498112	XM_222823.4	LOC304923	XP_222823.3	ILMN_1372254	0004010270	S	1921	GATCATCCAACAATGGTGTGCTCCCTCTCTAAAGCTCTGTAACACAAGCG	13	-	79104422-79104471	13q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11752 (LOC304923), mRNA.					
Rattus norvegicus	RefSeq	GI_62664578-S	ILMN_269005	RGD1561768_PREDICTED	XR_007890.1	XR_007890.1		307416	109507382	XR_007890.1	RGD1561768_predicted		ILMN_1355576	0006290164	S	385	CTAAGAGACCATCTGTCCTCCGAGCAGGGGTCAACACAGGTACTACCTTT				18q12.1	PREDICTED: Rattus norvegicus similar to Rpl7a protein (predicted) (RGD1561768_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592010-S	ILMN_262506	NELL1	NM_031069.1	NM_031069.1		81733	13592010	NM_031069.1	Nell1	NP_112331.1	ILMN_1364282	0002680440	S	2600	GTCTCCATCTGAGGAAGGCGTTTGGATTGCCTTTGCCACTTTGCTCATCC	1	+	100757822-100757871	1q22	Rattus norvegicus NEL-like 1 (chicken) (Nell1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that modulates the frequency, rate or extent of osteoblast differentiation [goid 45667] [evidence IMP]	Interacting selectively with protein kinase C [goid 5080] [evidence IMP]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948483-S	ILMN_300384	HSPA14	NM_001004257.1	NM_001004257.1		307133	51948483	NM_001004257.1	Hspa14	NP_001004257.1	ILMN_1360105	0004670162	S	1528	TTTACAGGTGACGTGCACAGACCAAGAGACCGGGAAGTGTGAGGCCATCA	17	+	85869166-85869215	17q12.3	Rattus norvegicus heat shock protein 14 (Hspa14), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94119	MGC94119
Rattus norvegicus	RefSeq	GI_51948367-S	ILMN_273711	TBP	NM_001004198.1	NM_001004198.1		117526	51948367	NM_001004198.1	Tbp	NP_001004198.1	ILMN_1349379	0006350040	S	1407	AGCATCACTGTGAGTTGCTTGCTCTGTGCTGCTACTTGGGCGGCACTGCC	1	+	54407102-54407151	1q12	Rattus norvegicus TATA box binding protein (Tbp), mRNA.	The pronucleus originating from the ovum that is being fertilized [goid 1939] [evidence ISS]; The pronucleus originating from the spermatozoa that was involved in fertilization [goid 1940] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence IEA]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	TFIID; MGC93994	TFIID; MGC93994
Rattus norvegicus	RefSeq	GI_62664851-S	ILMN_299358	RGD1559526_PREDICTED	XM_344718.2	XM_344718.2		364929	62664851	XM_344718.2	RGD1559526_predicted	XP_344719.2	ILMN_1371321	0006200364	S	331	TTCGTCAAGAAGGGAGATGTGCTGACCGGGTGGCGTCCAGTCTCTGGCTT	19	-	2602352-2602401	19p14	PREDICTED: Rattus norvegicus similar to Pkm2 protein (predicted) (RGD1559526_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645830-S	ILMN_54800	NPHP1_PREDICTED	XM_215847.4	XM_215847.4		296136	109468785	XM_215847.4	Nphp1_predicted	XP_215847.4	ILMN_1372541	0006620082	S	2345	CGCTGACTTCCTCAAGCAAAGCCGAGAGAACGAGGGTTCCCTGAAGGCTC	3	-	115264099-115264148	3q36	PREDICTED: Rattus norvegicus nephronophthisis 1 (juvenile) homolog (human) (predicted) (Nphp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654781-S	ILMN_52036	TMEM14A_PREDICTED	XM_343546.3	XM_343546.3		363206	109485877	XM_343546.3	Tmem14a_predicted	XP_343547.1	ILMN_1351083	0001410440	S	756	AACTGCAACCTGTCAGAAGATGGGACTGCTGGAGGGGACCACAGGGAGTG	9	+	19999105-19999154	9q13	PREDICTED: Rattus norvegicus transmembrane protein 14A (predicted) (Tmem14a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652713-S	ILMN_270057	CARD10_PREDICTED	XM_001076142.1	XM_001076142.1		315120	109482545	XM_001076142.1	Card10_predicted	XP_001076142.1	ILMN_1370314	0000520139	S	2943	GGAGGTGACTGAGAAGAATGTCCGTGAGATCAGGAGCCTGTTGGGCAGGC				7q34	PREDICTED: Rattus norvegicus caspase recruitment domain family, member 10 (predicted) (Card10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639749-S	ILMN_276956	LOC687984	XM_001080764.1	XM_001080764.1		687984	109461941	XM_001080764.1	LOC687984	XP_001080764.1	ILMN_1352080	0000060132	S	1071	GGCCCTCACTGATTCTTTGGACTGGCTGGAAGCCTTGAGTGGGGGTCCAC					PREDICTED: Rattus norvegicus hypothetical protein LOC687984 (LOC687984), mRNA.					
Rattus norvegicus	RefSeq	GI_34852265-S	ILMN_63955	RGD1309887_PREDICTED	XM_228042.3	XM_228042.3		294307	109509208	XM_228042.3	RGD1309887_predicted	XP_228042.3	ILMN_1371311	0000070717	S	1217	AGCTCGACCGGCTAAACGCGCCGCTTGCTCAGATGGCTCCGAATGACTTT	20	+	7253080-7253129	20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004N11; DNA segment, Chr 17, ERATO Doi 562, expressed (predicted) (RGD1309887_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647074-S	ILMN_49188	LOC502744	XM_580255.1	XM_580255.1		502744	62647074	XM_580255.1	LOC502744	XP_580255.1	ILMN_1373244	0002230546	S	154	CACCTCAGAAGGGAGTCATGCGGTCCTGTGGGCTCATGGGTGCTACATTC					PREDICTED: Rattus norvegicus LOC502744 (LOC502744), mRNA.					
Rattus norvegicus	RefSeq	GI_34855473-S	ILMN_281963	LOC687222	XM_001077570.1	XM_001077570.1		687222	109461506	XM_001077570.1	LOC687222	XP_001077570.1	ILMN_1353657	0004760072	S	1012	GGTATAAGCAAAATACCCTCACCATACCAGATTCACTTCCTGTCCCGCTG					PREDICTED: Rattus norvegicus similar to Cytochrome P450 2B12 (CYPIIB12) (LOC687222), mRNA.					
Rattus norvegicus	RefSeq	GI_58865415-A	ILMN_264726	PRPF4B	NM_001011923.1	NM_001011923.1		291078	58865415	NM_001011923.1	Prpf4b	NP_001011923.1	ILMN_1376742	0002690056	S	3784	CGAAGCGTATGCGCTTGATGGGTAGAGCGCCTTCAGTGTACTGTTTCCTA	17	-	36320125-36320174	17p12	Rattus norvegicus PRP4 pre-mRNA processing factor 4 homolog B (yeast) (Prpf4b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence ISS]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47777735	ILMN_295642	OLR1512	NM_001001350.1	NM_001001350.1		287511	47777735	NM_001001350.1	Olr1512	NP_001001350.1	ILMN_1650738	0000780435	S	899	TTCAGGCCGCCCTCTGGAGGGTACTCACAGGGAGACGGTCAGAAGCTTGA	10	+	61444956-61445005	10q24	Rattus norvegicus olfactory receptor 1512 (Olr1512), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1512	Olr1512
Rattus norvegicus	RefSeq	GI_62718413-S	ILMN_58666	LOC503344	XM_578878.1	XM_578878.1		503344	62718413	XM_578878.1	LOC503344	XP_578878.1	ILMN_1358575	0003780092	S	395	TTGTCGGTTGAGCAAGGAGGTACAGGCTGTGATACATATGGTTGCCAATC					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503344), mRNA.					
Rattus norvegicus	RefSeq	GI_34879160-S	ILMN_283036	RGD1564690_PREDICTED	XM_001070930.1	XM_001070930.1		364621	109504368	XM_001070930.1	RGD1564690_predicted	XP_001070930.1	ILMN_1373001	0006350402	S	62	CATGGGCCTCAACAAGGGCCACAAGGAGCCTCACCAAGCACACCAAGTCC				16q12.4	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (predicted) (RGD1564690_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576162-S	ILMN_292181	OLR136	NM_001000160.1	NM_001000160.1		293273	47576162	NM_001000160.1	Olr136	NP_001000160.1	ILMN_1353324	0002900008	S	486	GCCTGTACTGTTAAGGAGACTGCCCTTCTGTGGTCACAATGCCCTCTCTC	1	+	161771994-161772043	1q32	Rattus norvegicus olfactory receptor 136 (Olr136), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161864433-161865386_ORF; Olr136	ratchr1-161864433-161865386_ORF; Olr136
Rattus norvegicus	RefSeq	GI_62645653-S	ILMN_300325	RGD1562326_PREDICTED	XM_001080919.1	XM_001080919.1		499877	109470695	XM_001080919.1	RGD1562326_predicted	XP_001080919.1	ILMN_1352402	0004610408	S	5213	TATCTCGGGAGCGGTATCGGAAGCTGCATTTGGTCTGGCAACAGCACTGC				3q35	PREDICTED: Rattus norvegicus similar to ubiquitin-protein ligase E3-alpha (predicted) (RGD1562326_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645655-S	ILMN_300325	RGD1562326_PREDICTED	XM_001080919.1	XM_001080919.1		499877	109470695	XM_001080919.1	RGD1562326_predicted	XP_001080919.1	ILMN_1354603	0004010019	S	3438	CATGGTGTTGTCCGCCTGTGTGCAGAAATCCACCGCCCTAACCCAGCACA				3q35	PREDICTED: Rattus norvegicus similar to ubiquitin-protein ligase E3-alpha (predicted) (RGD1562326_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639234-S	ILMN_287405	RGD1562943_PREDICTED	XR_009209.1	XR_009209.1		499113	109461570	XR_009209.1	RGD1562943_predicted		ILMN_1350158	0007050041	S	447	ATCTCACGCTCGCTCAAAAGCAGAAGCCCTCGATCCACAGCCTAGCGGAG				1q21	PREDICTED: Rattus norvegicus similar to selenoprotein V (predicted) (RGD1562943_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605711-S	ILMN_274412	PLAG1	NM_001008316.1	NM_001008316.1		297804	56605711	NM_001008316.1	Plag1	NP_001008317.1	ILMN_1363846	0006020180	S	3163	TGGGCTTCCTCTTGTCAGACAGCCACCAAGAATGTCATCGGTAGCTCCGC	5	-	17215064-17215113	5q12	Rattus norvegicus pleiomorphic adenoma gene 1 (Plag1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94626	MGC94626
Rattus norvegicus	RefSeq	GI_62648090-S	ILMN_51726	ADIPOR2_PREDICTED	XM_232323.3	XM_232323.3		312670	62648090	XM_232323.3	Adipor2_predicted	XP_232323.2	ILMN_1367645	0006660204	S	2412	GGTGTAGTAGAGTTGATGAAGGGGAGGAGGACCTGGGAGCGTCAGCCTAG				4q42	PREDICTED: Rattus norvegicus adiponectin receptor 2 (predicted) (Adipor2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655240-S	ILMN_51742	LOC363256	XM_343596.3	XM_343596.3		363256	109486263	XM_343596.3	LOC363256	XP_343597.2	ILMN_1358264	0005050397	S	10428	GGGCAGGCCAGCGGCTGCATCTTCAGAAAGAGCAAGGAGAAAGGCAAAGA	9	+	74709392-74709415:74709633-74709658	9q33	PREDICTED: Rattus norvegicus similar to aortic preferentially expressed gene 1 (LOC363256), mRNA.					
Rattus norvegicus	RefSeq	GI_62653003-S	ILMN_51933	LOC300191	XM_217033.4	XM_217033.4		300191	109481254	XM_217033.4	LOC300191	XP_217033.2	ILMN_1360686	0002690079	S	775	TTTCTACTCAGCCTCTACGCCCACCGCTACCGGGCTGACTTCGCTGACAT	7	+	136499090-136499139	7q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930570C03 (LOC300191), mRNA.					
Rattus norvegicus	RefSeq	GI_6981063-S	ILMN_287363	IAPP	NM_012586.1	NM_012586.1		24476	6981063	NM_012586.1	Iapp	NP_036718.1	ILMN_1359967	0006980672	S	259	GCTCCAGCAACAACCTTGGTCCAGTCCTCCCACCAACCAATGTGGGATCC	4	+	179860753-179860802	4q44	Rattus norvegicus islet amyloid polypeptide (Iapp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence TAS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence TAS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62655345-S	ILMN_64546	LOC501179	XM_580168.1	XM_580168.1		501179	62655345	XM_580168.1	LOC501179	XP_580168.1	ILMN_1371469	0004480433	S	1343	CCTGAATGAGGTGGGAGCAGACGCCATTTTAATAACGCAAGGTGATACCG					PREDICTED: Rattus norvegicus LOC501179 (LOC501179), mRNA.					
Rattus norvegicus	RefSeq	GI_47059172-S	ILMN_286545	IER3	NM_212505.1	NM_212505.1		294235	47059172	NM_212505.1	Ier3	NP_997670.1	ILMN_1371962	0001740725	S	839	TGGTCGGGGGGCATAGGTTTAGGGGTAACACTCCATTTTCCAGCACTTCG	20	-	3076749-3076798	20p12	Rattus norvegicus immediate early response 3 (Ier3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Prg1; MGC124532; Iex1; Dif2; Ler3	Prg1; MGC124532; Iex1; Dif2; Ler3
Rattus norvegicus	RefSeq	GI_62649793-S	ILMN_47739	PPP1R8_PREDICTED	XM_232739.3	XM_232739.3		313030	109475618	XM_232739.3	Ppp1r8_predicted	XP_232739.1	ILMN_1348994	0003710040	S	926	CTGTTGTGCCGTCAGCAGTGACCATAAATCCCACACCAAACCCCGCAGTG	5	+	152322209-152322258	5q36	PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 8 (predicted) (Ppp1r8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667104-S	ILMN_275781	RGD1561693_PREDICTED	XM_001054257.1	XM_001054257.1		501597	109512144	XM_001054257.1	RGD1561693_predicted	XP_001054257.1	ILMN_1362719	0004570538	S	2801	CCACAGTGAGAAAGGGGAAAAGTGCAAGGTAGGGTTTGCACTTATTGCTG				Xq31	PREDICTED: Rattus norvegicus similar to Gene model 784 (predicted) (RGD1561693_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667106-S	ILMN_275781	RGD1561693_PREDICTED	XM_001054257.1	XM_001054257.1		501597	109512144	XM_001054257.1	RGD1561693_predicted	XP_001054257.1	ILMN_1349777	0003990538	S	640	CTGGTGATGGCGTTACTGTGGTCCTACATGATCTACAGCCTTGCACGGTC				Xq31	PREDICTED: Rattus norvegicus similar to Gene model 784 (predicted) (RGD1561693_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27710199-S	ILMN_296004	RGD1560427_PREDICTED	XM_001058092.1	XM_001058092.1		302867	109511481	XM_001058092.1	RGD1560427_predicted	XP_001058092.1	ILMN_1365035	0001980040	S	489	CATGGACCAAGTCCTGCCGCCCCATCATCCGTCCCAACAATGGCTTTTGG				Xq12	PREDICTED: Rattus norvegicus similar to Dual specificity protein phosphatase 18 (Low molecular weight dual specificity phosphatase 20) (predicted) (RGD1560427_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643076-S	ILMN_263271	RAD1_PREDICTED	XM_001060140.1	XM_001060140.1		294800	109466185	XM_001060140.1	Rad1_predicted	XP_001060140.1	ILMN_1351334	0002940576	S	555	GTCCGAGGGACTCCGGGAAGCCTTTTCTGAGTTGGACATGACAGGTGATG				2q16	PREDICTED: Rattus norvegicus RAD1 homolog (S. pombe) (predicted) (Rad1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661982-S	ILMN_49296	LOC502019	XM_577447.1	XM_577447.1		502019	62661982	XM_577447.1	LOC502019	XP_577447.1	ILMN_1356850	0002810722	S	370	TGGAGCAAAATCAGTTTATCCGCTGGAAAGCAAGACAAGGAAGGATTAGG					PREDICTED: Rattus norvegicus similar to 39S ribosomal protein L40, mitochondrial precursor (L40mt) (MRP-40) (Nuclear localization signal containing protein deleted in velocardiofacial syndrome homolog) (LOC502019), mRNA.					
Rattus norvegicus	RefSeq	GI_62648544-S	ILMN_282779	COPS5	NM_001025695.1	NM_001025695.1		312916	71043619	NM_001025695.1	Cops5	NP_001020866.1	ILMN_1364140	0004010162	S	903	CCACAGGCCAGGTGTTTGATCTGTCTGAGAAGTTAGAGCAGTCGGAAGCC	5	+	8724943-8724992	5q11	Rattus norvegicus COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) (Cops5), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence IEA]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence ISS]	Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112728	MGC112728
Rattus norvegicus	RefSeq	GI_31340701-S	ILMN_285693	KIR3DL1	NM_181479.2	NM_181479.2		353253	31340701	NM_181479.2	Kir3dl1	NP_852144.1	ILMN_1372176	0005340438	S	669	CAAGAAACCTTCTCTGTCGTCTGTGATGAGCCCTGTACTGGTGTCAGAAC	1	-	69078535-69078584	1q12	Rattus norvegicus killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 (Kir3dl1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25453409-A	ILMN_280509	CACNA1B	NM_147141.1	NM_147141.1		257648	25453409	NM_147141.1	Cacna1b	NP_671482.1	ILMN_1376909	0000670671	S	8261	ATGCAAGCAAAGAAGGGACTGGGGTTAGAGGGAGAAGCCCGCACTGGCAG	3	-	2874746-2874795	3p13	Rattus norvegicus calcium channel, voltage-dependent, N type, alpha 1B subunit (Cacna1b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IMP]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647469-S	ILMN_68287	RGD1561512_PREDICTED	XM_575552.2	XM_575552.2		500200	109472161	XM_575552.2	RGD1561512_predicted	XP_575552.1	ILMN_1363251	0003360053	S	2446	GCCAGCATGTGGGGGAACGGGTACGTTCAAAGCCAAGGCCTGCTCCTTGT	4	-	105500015-105500064	4q33	PREDICTED: Rattus norvegicus similar to bHLH factor Math6 (predicted) (RGD1561512_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012345-A	ILMN_302329	RT1-BA	NM_001008831.1	NM_001008831.1		309621	57012345	NM_001008831.1	RT1-Ba	NP_001008831.1	ILMN_1376669	0000510309	S	701	TGGGCACCATCTTCATCATTCAAGGCCTGCGGTCAGGTGGCCCCTCCAGA	20	+	4702083-4702132	20p12	Rattus norvegicus RT1 class II, locus Ba (RT1-Ba), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IEA]; The process by which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein [goid 48002] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IEA]; The process by which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein [goid 48002] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence IEA]	MGC105667	MGC105667
Rattus norvegicus	RefSeq	GI_62652283-S	ILMN_271269	STAT6_PREDICTED	XM_001057138.1	XM_001057138.1		362896	109482081	XM_001057138.1	Stat6_predicted	XP_001057138.1	ILMN_1357297	0005860487	S	2405	CCTTTCAGGAGCCTCACCTTCAAATGCCCCCCACCATGAGCCAGATAAGC				7q22	PREDICTED: Rattus norvegicus signal transducer and activator of transcription 6 (predicted), transcript variant 1 (Stat6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656300-S	ILMN_58946	RGD1559567_PREDICTED	XM_343918.3	XM_343918.3		363629	109488365	XM_343918.3	RGD1559567_predicted	XP_343919.1	ILMN_1362832	0006110114	S	400	CGGAATACCCTGGTGGAAGGGGCTAAATTACCAGGTGGGACGGCTGTCTG	10	-	56189195-56189244	10q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559567_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16757999-S	ILMN_280896	CXCR5	NM_053303.1	NM_053303.1		29363	16757999	NM_053303.1	Cxcr5	NP_445755.1	ILMN_1357073	0001190068	S	1047	CCTTTGTCAGCTCTTTCCGGGCTGGCGCAAGAGCAGTCTCTCTGAGTCAG	8	-	47485193-47485242	8q22	Rattus norvegicus chemokine (C-X-C motif) receptor 5 (Cxcr5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IEA]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IEA]	NLR	NLR
Rattus norvegicus	RefSeq	GI_55741539-S	ILMN_284688	KATNAL1	NM_001006956.1	NM_001006956.1		288449	55741539	NM_001006956.1	Katnal1	NP_001006957.1	ILMN_1349707	0006370632	S	1432	AGATGCCTGTCACCAGAGGGGACTTGGAGCTGGCGCTGAAGAAAATCGCC	12	+	6657591-6657640	12p11	Rattus norvegicus katanin p60 subunit A-like 1 (Katnal1), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP [goid 8568] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638792-S	ILMN_272290	RGD1565566_PREDICTED	XM_001060296.1	XM_001060296.1		499057	109460924	XM_001060296.1	RGD1565566_predicted	XP_001060296.1	ILMN_1358315	0003290647	S	11	AAACCACAACTTATGTGTCAGGCACGCTTCGGGAGTACAAGATGGTGGGG				1q12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L18a (predicted) (RGD1565566_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090270-S	ILMN_270199	RPS20	NM_001007603.1	NM_001007603.1		122772	56090270	NM_001007603.1	Rps20	NP_001007604.1	ILMN_1351822	0006980333	S	1	GGGGCTTTCCGAGACCTGTGGTGCGTGCTGTGGAGCCTTGTCAAGTCTGC	5	-	17120909-17120958	5q12	Rattus norvegicus ribosomal protein S20 (Rps20), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72939	MGC72939
Rattus norvegicus	RefSeq	GI_62655882-S	ILMN_59726	LOC302996	XM_220252.3	XM_220252.3		302996	62655882	XM_220252.3	LOC302996	XP_220252.2	ILMN_1352676	0002470672	S	1337	ATCAAATCTCTTCACAGCCAGCATGGAACCCTCTGGACGCCCACCCCCAG				10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ34512 (LOC302996), mRNA.					
Rattus norvegicus	RefSeq	GI_62665107-S	ILMN_297707	OTUD4	XM_001074219.1	XM_001074219.1		307774	109508721	XM_001074219.1	Otud4	XP_001074219.1	ILMN_1373463	0002570170	S	3138	GTCAGGGATGGGAGATGGCCACAGGGGACAACACACTTAATGGCTGGTTG				19q11	PREDICTED: Rattus norvegicus OTU domain containing 4 (Otud4), mRNA.					
Rattus norvegicus	RefSeq	GI_62651990-S	ILMN_69782	RGD1564821_PREDICTED	XM_343194.3	XM_343194.3		362865	109480432	XM_343194.3	RGD1564821_predicted	XP_343195.3	ILMN_1359222	0001690112	S	3980	ACTGCGGACTGAGAAGTCAGGGCATCTTGAAAGCAGGTGCTGAGGGACCC	7	+	25149617-25149666	7q13	PREDICTED: Rattus norvegicus similar to mKIAA1208 protein (predicted) (RGD1564821_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662483-S	ILMN_54034	RGD1560677_PREDICTED	XM_573890.2	XM_573890.2		498612	109503256	XM_573890.2	RGD1560677_predicted	XP_573890.1	ILMN_2040852	0005700300	S	524	CTGACTGCCTGGCCTATGTTGAGCCAGAGCCAGCTATGTCCACCCACCAT	16	-	21188099-21188148	16p14	PREDICTED: Rattus norvegicus similar to dentin phosphoryn (predicted) (RGD1560677_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654965-S	ILMN_265706	RGD1563696_PREDICTED	XM_001059514.1	XM_001059514.1		501129	109487036	XM_001059514.1	RGD1563696_predicted	XP_001059514.1	ILMN_1351930	0000130161	S	747	CGGCTGGTCGTTTTTTCTGGCCCCGGCTGGAGTATTTTTCTCTCTGCTCG				9q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30294 (predicted) (RGD1563696_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658132-S	ILMN_288964	RGD1562339_PREDICTED	XM_001058431.1	XM_001058431.1		498107	109494658	XM_001058431.1	RGD1562339_predicted	XP_001058431.1	ILMN_1354852	0004210068	S	5107	GCTGACGGTAAGGCAGTTGGAAGCCTGTCTGGGGTTTGAATGGCACCTCC				11q23	PREDICTED: Rattus norvegicus RGD1562339 (predicted) (RGD1562339_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658130-S	ILMN_288964	RGD1562339_PREDICTED	XM_001058431.1	XM_001058431.1		498107	109494658	XM_001058431.1	RGD1562339_predicted	XP_001058431.1	ILMN_1365803	0002350070	S	768	CTACGTGCAGAAGCAGCCCCATTCCCAGAAGATGAGCCCTGAGGAGGTCT				11q23	PREDICTED: Rattus norvegicus RGD1562339 (predicted) (RGD1562339_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981577-S	ILMN_263794	SPINK1	NM_012674.1	NM_012674.1		24833	6981577	NM_012674.1	Spink1	NP_036806.1	ILMN_1353240	0005080114	S	2259	GGGGGGCGTGGGTCTGGGAGGAGTTGGGGGATAGAGAAAAATATAATAAA	18	-	37133460-37133509	18p11	Rattus norvegicus serine protease inhibitor, Kazal type 1 (Spink1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	Tilp	Tilp
Rattus norvegicus	RefSeq	GI_62641586-S	ILMN_47719	RIC8A	XM_215118.4	XM_215118.4		293614	109459581	XM_215118.4	Ric8a	XP_215118.2	ILMN_1369684	0002260670	S	2092	TAAATGAGCGTGCATGTGTGAGGGCGGTAGCTGAGCAGGGTGCACACGGT	1	+	201020340-201020389	1q41	PREDICTED: Rattus norvegicus resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) (Ric8a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]	Interacting selectively with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide [goid 1965] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62641173-S	ILMN_50168	SOX6_PREDICTED	XM_215016.3	XM_215016.3		293165	62641173	XM_215016.3	Sox6_predicted	XP_215016.3	ILMN_1373725	0003190450	S	4436	GAGCCCTTCGGTAGGAGGTGTCAGTGAACAGTACAGCCTAGCATCTAAGC				1q34	PREDICTED: Rattus norvegicus SRY-box containing gene 6 (predicted) (Sox6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651286-S	ILMN_56030	LOC500725	XM_580115.1	XM_580115.1		500725	62651286	XM_580115.1	LOC500725	XP_580115.1	ILMN_1358576	0001980452	S	484	CTGGGAAAGCGGAAGGAGCGGATACGCTAGACGCCCGCTGTGGGGTCTTT					PREDICTED: Rattus norvegicus LOC500725 (LOC500725), mRNA.					
Rattus norvegicus	RefSeq	GI_21687017-S	ILMN_287388	CACNG8	NM_080696.1	NM_080696.1		140729	21687017	NM_080696.1	Cacng8	NP_542427.1	ILMN_1373930	0003850546	S	1216	GCCGCCGCGTCCAACACCAACACGCTCAACAGGAAAACCACGCCCGTGTA	1	-	64068324-64068373	1q12	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 8 (Cacng8), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242270-S	ILMN_301246	SLC6A11	NM_024372.1	NM_024372.1		79213	13242270	NM_024372.1	Slc6a11	NP_077348.1	ILMN_1355693	0003390541	S	1803	GGCCAGCCCACGGATGGTGACCGTTAATGACTGTGAGGCCAAGGTCAAAG	4	+	150196102-150196151	4q42	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, GABA), member 11 (Slc6a11), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IDA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA]	Gat3; Gabt4	Gat3; Gabt4
Rattus norvegicus	RefSeq	GI_62660043-S	ILMN_66442	ABHD7_PREDICTED	XM_213993.4	XM_213993.4		289440	109499353	XM_213993.4	Abhd7_predicted	XP_213993.3	ILMN_1361574	0001690110	S	924	CGCTGCTTCTGTGGGGAGAGGAAGATGCGTTTATGGAGGTGGAGATGGCC	14	-	2902658-2902707	14p22	PREDICTED: Rattus norvegicus abhydrolase domain containing 7 (predicted) (Abhd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718600-S	ILMN_48194	LOC503377	XM_580267.1	XM_580267.1		503377	62718600	XM_580267.1	LOC503377	XP_580267.1	ILMN_1361098	0004560575	S	1355	CAAGAAAATCGTCGGCAGATCCCCTAAAGAGTACCGAGAAAACAGTGGAG					PREDICTED: Rattus norvegicus LOC503377 (LOC503377), mRNA.					
Rattus norvegicus	RefSeq	GI_62638397-S	ILMN_70353	RGD1566426_PREDICTED	XM_574285.2	XM_574285.2		498995	109457673	XM_574285.2	RGD1566426_predicted	XP_574285.2	ILMN_1367958	0006760079	S	2656	TCTTTAGAACTCGGTGGTGGAGGGGGACGGTTTGGTCTGTGGCTAGATGC	1	+	27697658-27697680:27697988-27698014	1p11	PREDICTED: Rattus norvegicus similar to nuclear receptor coactivator 7 (predicted) (RGD1566426_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576648-S	ILMN_302260	OLR854	NM_001000582.1	NM_001000582.1		366377	47576648	NM_001000582.1	Olr854	NP_001000582.1	ILMN_1357249	0002640685	S	645	CTCGTATGGCTTCATCCTTTCTACAATTCTGAGGATCGGCTCAACAGAGG	5	-	76807740-76807789	5q24	Rattus norvegicus olfactory receptor 854 (Olr854), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr854	Olr854
Rattus norvegicus	RefSeq	GI_62657856-S	ILMN_264486	RGD1563933_PREDICTED	XR_008218.1	XR_008218.1		363776	109494321	XR_008218.1	RGD1563933_predicted		ILMN_1353186	0000870133	S	161	GTCTCTGTCTTGAGAAACTGTGGGGTAACAGAAAGGAACTGTCCACTGTC				11q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (predicted) (RGD1563933_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639887-S	ILMN_68516	RGD1565684_PREDICTED	XM_577801.2	XM_577801.2		502336	109458677	XM_577801.2	RGD1565684_predicted	XP_577801.2	ILMN_1353903	0001240364	S	539	CGCCGGTGGCTGCAGAAGACCAAAGGTCTGCGTTAGATAGAAGTCCTGAG	1	-	94467584-94467633	1q22	PREDICTED: Rattus norvegicus similar to kallikrein 1 precursor (predicted) (RGD1565684_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012351-S	ILMN_278021	KRT75	NM_001008828.1	NM_001008828.1		300247	57012351	NM_001008828.1	Krt75	NP_001008828.1	ILMN_1361270	0006840102	S	1598	CAGTGGGCAGTGGCTCCAGCATCAAGTTTGTCTCCAGCACGTCATCCAGC	7	-	140320702-140320751	7q36	Rattus norvegicus keratin 75 (Krt75), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658897-S	ILMN_54117	PITPNM2_PREDICTED	XM_222155.4	XM_222155.4		304474	109495869	XM_222155.4	Pitpnm2_predicted	XP_222155.4	ILMN_1349279	0002320497	S	3938	AGTTCATCACAGACGGCTACGCGGCCCACCTGGCCCAGCTCAAGTACAAT	12	+	33600282-33600283:33600366-33600413	12q15	PREDICTED: Rattus norvegicus phosphatidylinositol transfer protein, membrane-associated 2 (predicted) (Pitpnm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656402-S	ILMN_64551	LOC501685	XM_577082.1	XM_577082.1		501685	62656402	XM_577082.1	LOC501685	XP_577082.1	ILMN_1354533	0001850082	S	258	CGCAGCGAAAGAATGAATAGATGGCTTCGAAACTGGCGGAAACCCAGAGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L32 (LOC501685), mRNA.					
Rattus norvegicus	RefSeq	GI_62656684-S	ILMN_63310	RGD1559875_PREDICTED	XM_573162.2	XM_573162.2		497970	109488704	XM_573162.2	RGD1559875_predicted	XP_573162.2	ILMN_1368968	0004060338	S	1371	CGACGTACCGAAGACTGTGAAGGTAGAGCCTACGAGGTTCCAGAAGGAGC	10	-	71592409-71592458	10q26	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559875_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651129-S	ILMN_48550	GPR65_PREDICTED	XM_234367.3	XM_234367.3		299242	109478629	XM_234367.3	Gpr65_predicted	XP_234367.3	ILMN_1356615	0004540458	S	725	CCCCTTTCCACGTGATGGTGCTCATCCGCTGCATTTTAGAGCGCAACGTG	6	+	122433339-122433388	6q32	PREDICTED: Rattus norvegicus G-protein coupled receptor 65 (predicted) (Gpr65_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653089-S	ILMN_56582	LOC500935	XM_576346.1	XM_576346.1		500935	62653089	XM_576346.1	LOC500935	XP_576346.1	ILMN_1349121	0000780452	S	1407	ACGACTTCTCAGGAAGAACAAGCTGGAAGGGCTGGAGGACAGACGCCCTG				7q36	PREDICTED: Rattus norvegicus similar to keratin 6 alpha (LOC500935), mRNA.					
Rattus norvegicus	RefSeq	GI_32441263-S	ILMN_285656	HK3	NM_022179.2	NM_022179.2		25060	32441263	NM_022179.2	Hk3	NP_071515.1	ILMN_1371051	0004590348	S	2823	GCTTGCCGCCTGACCCAGATGGCCTGCGTTTGAGGAAAATCTCCAAAGAG	17	+	15668905-15668937:15668938-15668954	17p14	Rattus norvegicus hexokinase 3 (white cell) (Hk3), nuclear gene encoding mitochondrial protein, mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence IDA]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence IEA]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RNU73859	RNU73859
Rattus norvegicus	RefSeq	GI_62647155-S	ILMN_277158	LOC312299	XM_001073768.1	XM_001073768.1		312299	109473434	XM_001073768.1	LOC312299	XP_001073768.1	ILMN_1349902	0000460215	S	1473	TGACCATCCACGGCAGCCTTGTGACAGTTCGTGCCCTTGTGTGATAGCAC				4q24	PREDICTED: Rattus norvegicus similar to Enhancer of zeste homolog 2 (ENX-1) (LOC312299), mRNA.					
Rattus norvegicus	RefSeq	GI_62662988-S	ILMN_63855	IRS2	XM_573948.1	XM_573948.1		29376	62662988	XM_573948.1	Irs2	XP_573948.1	ILMN_1371195	0006400152	S	4656	CTCAGGGAGAAGCAGCCGAGGTGGAGGTGCTGAGGAAAGAAAGCACTCAG				16q12.5	PREDICTED: Rattus norvegicus insulin receptor substrate 2 (Irs2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IMP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with the insulin receptor [goid 5158] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with any protein phosphatase [goid 19903] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IMP]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_19923685-S	ILMN_70164	CXCL12	NM_022177.3	NM_022177.3		24772	76496502	NM_022177.3	Cxcl12	NP_071513.1	ILMN_1351603	0004230167	S	1377	GCCAGAATCTTGCCGTGAAGCCACAGTGGGGATTCTGGGTTCCAATCAGA	4	+	153509878-153509927	4q42	Rattus norvegicus chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) (Cxcl12), transcript variant 1, mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; Cell migration that is accomplished by extension and retraction of a pseudopodium [goid 1667] [evidence IEA]; Cell migration that is accomplished by extension and retraction of a pseudopodium [goid 1667] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence IEA]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence IEA]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence TAS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence IEA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence IEA]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Sdf1	Sdf1
Rattus norvegicus	RefSeq	GI_19924058-S	ILMN_265974	PRL5A1	NM_138527.1	NM_138527.1		171556	19924058	NM_138527.1	Prl5a1	NP_612536.1	ILMN_1374251	0006940136	S	558	CCTGAACTTAAGGAGAAGGAGAACTACCCTGTCTGGTCAGGAGAGCCATA	17	-	43119376-43119425	17p11	Rattus norvegicus prolactin family 5, subfamily a, member 1 (Prl5a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpl	Prlpl
Rattus norvegicus	RefSeq	GI_62648393	ILMN_274462	PHB2	NM_001013035.1	NM_001013035.1		114766	61556753	NM_001013035.1	Phb2	NP_001013053.1	ILMN_1650623	0006660008	S	914	CGATCGCCACATCACAGAACCGGATCTATCTCACAGCTGACAACCTTGTG	4	+	160838625-160838626:160838928-160838975	4q42	Rattus norvegicus prohibitin 2 (Phb2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Bap-37; Bcap27; Bap; Bcap37; Bap37	Bap-37; Bcap27; Bap; Bcap37; Bap37
Rattus norvegicus	RefSeq	GI_62643035-S	ILMN_266957	BXDC2	NM_001029915.1	NM_001029915.1		294799	71361618	NM_001029915.1	Bxdc2	NP_001025086.1	ILMN_1373886	0004120044	S	1381	GAGACTGGATGGGAGGGTGGAGGTCATTTCACTGAGCTTTCTCTGCTGAG	2	-	59827895-59827944	2q16	Rattus norvegicus brix domain containing 2 (Bxdc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116151; RGD1308508	MGC116151; RGD1308508
Rattus norvegicus	Unigene	Rn.1215	ILMN_160667	MRVLDC1_PREDICTED	Rn.1215		Rn.1215		62642338	XM_219885	Mrvldc1_predicted		ILMN_1530422	0006760044	S	2703	TTATCCAGTAGTGTATTCAAGGTTACCCCAGTATGCTTTTTCGGAATAAA					PREDICTED: Rattus norvegicus MARVEL (membrane-associating) domain containing 1 (predicted) (Mrvldc1_predicted),					
Rattus norvegicus	RefSeq	GI_62649565-S	ILMN_295398	SLFNL1	NM_001024347.1	NM_001024347.1		500540	66730487	NM_001024347.1	Slfnl1	NP_001019518.1	ILMN_1360077	0003130619	S	1385	ACGAGACGGACCAGGGGGAGGTTTTTCTAAGGCGTGATGGGAGCATCCAG	5	+	141132809-141132858	5q36	Rattus norvegicus schlafen-like 1 (Slfnl1), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981103-S	ILMN_271983	IRF1	NM_012591.1	NM_012591.1		24508	6981103	NM_012591.1	Irf1	NP_036723.1	ILMN_1372095	0006180301	S	1920	AGGGGGTTGTGAGCGCCTTGGCGTGACTCTGAACATTGGAAACGCCACCT	10	+	39227482-39227531	10q22	Rattus norvegicus interferon regulatory factor 1 (Irf1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence NAS]; The process whereby a relatively unspecialized T cell acquires specialized features of a mature CD8-positive, alpha-beta T cell [goid 43374] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655860-S	ILMN_296117	RGD1565247_PREDICTED	XM_001059160.1	XM_001059160.1		302987	109490381	XM_001059160.1	RGD1565247_predicted	XP_001059160.1	ILMN_1366552	0003450538	S	4425	ATGATAGTGTCGAAGTCTTGTGTACCTGGTTGGCAGGCCTCCCCGCAGTG				10q12	PREDICTED: Rattus norvegicus similar to chromosome 16 open reading frame 28 (predicted) (RGD1565247_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666426-S	ILMN_301873	RHOX9	NM_001024874.1	NM_001024874.1		298352	67846025	NM_001024874.1	Rhox9	NP_001020045.1	ILMN_1366893	0006520278	S	693	AGATTTTGGAGCAGCACTTGAGTGCCACCCCTGTCCCAGAGCCACATGAG	X	+	7499400-7499449	Xq11	Rattus norvegicus reproductive homeobox 9 (Rhox9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718766-S	ILMN_60340	LOC316192	XM_236887.3	XM_236887.3		316192	62718766	XM_236887.3	LOC316192	XP_236887.3	ILMN_1360244	0001450671	S	776	TGACCCCAGTGCCAAGCAACAGCAGGTAGGGAATCTTGTGAGACTCCAGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC316192), mRNA.					
Rattus norvegicus	RefSeq	GI_62656034-S	ILMN_276225	RGD1560080_PREDICTED	XM_001072258.1	XM_001072258.1		497898	109490654	XM_001072258.1	RGD1560080_predicted	XP_001072258.1	ILMN_1349275	0001410072	S	2104	GTAGTGCATGTGGAAAGCTCTTCAGTCAGAGGTCCTCCCTTACCAATCAT				10q22	PREDICTED: Rattus norvegicus similar to KID2 (predicted) (RGD1560080_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659024-S	ILMN_61455	LOC304530	XM_222216.3	XM_222216.3		304530	62659024	XM_222216.3	LOC304530	XP_222216.3	ILMN_1351879	0000360546	S	4168	GTGAAAGATTTCCCTTCCAGGTGCCTCTGGGGATGACTCTGAGGGCTGGG				12q16	PREDICTED: Rattus norvegicus similar to TAO kinase 3 (LOC304530), mRNA.					
Rattus norvegicus	RefSeq	GI_57012387-S	ILMN_267324	KRT80	NM_001008815.1	NM_001008815.1		315318	57012387	NM_001008815.1	Krt80	NP_001008815.1	ILMN_1365316	0003130164	S	962	TGAAACTGGAGGAGAACATCAAGGTGGCCGAGGAACAAGGAGAGCTGGCC	7	-	140097468-140097517	7q36	Rattus norvegicus keratin 80 (Krt80), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Kb2	Kb2
Rattus norvegicus	RefSeq	GI_57527928-S	ILMN_295839	USF1	NM_031777.2	NM_031777.2		83586	57527928	NM_031777.2	Usf1	NP_113965.1	ILMN_1358713	0003140195	S	1384	GCCTGGCAGAGGGTCTGTGGGCCGAGTATTTCACTGGTTCTTCCTTTCTC	13	+	87344165-87344214	13q24	Rattus norvegicus upstream transcription factor 1 (Usf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involving glucose that activates or increases the rate of transcription from an RNA polymerase II promoter [goid 432] [evidence ISS]; Any process involving glucose that activates or increases the rate of transcription from an RNA polymerase II promoter [goid 432] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence ISS]; The last group of viral genes to be transcribed during the viral life cycle; genes consist mainly of those encoding structural proteins [goid 19086] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process involved in the maintenance of an internal equilibrium of lipid within an organism or cell [goid 55088] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639908-S	ILMN_281478	LOC502338	XM_001080876.1	XM_001080876.1		502338	109461994	XM_001080876.1	LOC502338	XP_001080876.1	ILMN_1370768	0002030494	S	464	CTTTGTCCTTGTTGTTTGCTCTTCTGGAGGGGGCAGAATGTGGCTTGCTG				1q22	PREDICTED: Rattus norvegicus similar to MAS-related GPR, member B2 (LOC502338), mRNA.					
Rattus norvegicus	RefSeq	GI_12621121-S	ILMN_286020	RPL14	NM_022949.1	NM_022949.1		65043	12621121	NM_022949.1	Rpl14	NP_075238.1	ILMN_1351461	0002030463	S	626	AAGGCACCTGCTCCAAAGGCAGCTGGCAAGAAAGCATGAGGAGGCTACAC	8	+	125584877-125584926	8q32	Rattus norvegicus ribosomal protein L14 (Rpl14), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661542-S	ILMN_48402	RGD1562422_PREDICTED	XM_573791.2	XM_573791.2		498522	109501735	XM_573791.2	RGD1562422_predicted	XP_573791.2	ILMN_1373651	0000360253	S	1591	GGGACCCATCAGAACCGAAACCGTGGGGATGAGAAACTTGGCCCGGAACG	15	+	35812063-35812112	15p12	PREDICTED: Rattus norvegicus RGD1562422 (predicted) (RGD1562422_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640713-S	ILMN_50775	LOC499180	XM_574473.1	XM_574473.1		499180	62640713	XM_574473.1	LOC499180	XP_574473.1	ILMN_1352626	0002690463	S	113	TGATGTCATGATGAGCACTGAGCGAGCTGGCTTGCAGTTCCCTGTGGGCT					PREDICTED: Rattus norvegicus similar to H2A histone family, member Z (LOC499180), mRNA.					
Rattus norvegicus	RefSeq	GI_56744248-S	ILMN_268757	RCN3_PREDICTED	NM_001008694.1	NM_001008694.1		494125	56744248	NM_001008694.1	Rcn3_predicted	NP_001008694.1	ILMN_1371681	0006370465	S	1375	GCTAACCTGTCCTGCCTAGGAGCAATAAAAGCTGTTGCTGGGGAAAGAAA				1q22	Rattus norvegicus reticulocalbin 3, EF-hand calcium binding domain (predicted) (Rcn3_predicted), mRNA.				Rcn3	Rcn3
Rattus norvegicus	RefSeq	GI_57113804-S	ILMN_276610	V1RG17	NM_001008932.1	NM_001008932.1		494280	57113804	NM_001008932.1	V1rg17	NP_001008932.1	ILMN_1363666	0006550142	S	680	CCTCACCTGAAGACAGAGCCACACAGACTATCCTTATCCTGCTGTGCACC	1	+	71682229-71682278	1q21	Rattus norvegicus vomeronasal 1 receptor, G17 (V1rg17), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642742-S	ILMN_58915	LHFPL2_PREDICTED	XM_226668.4	XM_226668.4		294643	109464259	XM_226668.4	Lhfpl2_predicted	XP_226668.4	ILMN_1353926	0002680041	S	744	CCACCGGGGGCACAGTCCTCACCTTTATCTGTGCTGTCTTCTCCGCACAA	2	+	24485953-24486002	2q12	PREDICTED: Rattus norvegicus lipoma HMGIC fusion partner-like 2 (predicted) (Lhfpl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650572-S	ILMN_66416	GPR22_PREDICTED	XM_234041.4	XM_234041.4		298944	109478116	XM_234041.4	Gpr22_predicted	XP_234041.3	ILMN_1360889	0006980575	S	2707	GTACCTCAGGTTGTCACAGACTAGAGAGAAGTCTCAGCTTCACCAAATAC	6	-	49656269-49656295:49656296-49656318	6q16	PREDICTED: Rattus norvegicus G protein-coupled receptor 22 (predicted) (Gpr22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777753-S	ILMN_293596	OLR1049	NM_001001365.1	NM_001001365.1		288840	47777753	NM_001001365.1	Olr1049	NP_001001365.1	ILMN_1369563	0007050131	S	441	AGCAGCACTGATCATCATTCTCCCACCATTTGGTCTAGGTTTGGGCCTGG	7	+	7639856-7639905	7q11	Rattus norvegicus olfactory receptor 1049 (Olr1049), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1049	Olr1049
Rattus norvegicus	RefSeq	GI_62639720-S	ILMN_274539	RGD1563523_PREDICTED	XM_001080698.1	XM_001080698.1		499150	109461911	XM_001080698.1	RGD1563523_predicted	XP_001080698.1	ILMN_1357360	0003130170	S	801	CTACATCTTCAGGCCATCCCAGCAGCTATAAGGTGGGGACCGTGTATCCC				1q22	PREDICTED: Rattus norvegicus similar to soggy precursor (predicted) (RGD1563523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656105-S	ILMN_48639	LARP1_PREDICTED	XM_220446.4	XM_220446.4		303158	109488126	XM_220446.4	Larp1_predicted	XP_220446.4	ILMN_1368183	0006520142	S	3175	ATGGGCGAGGAAGGCAACCACAAGCGACACCCAGTAGTAGCAGGAGGCAG	10	+	43674680-43674729	10q22	PREDICTED: Rattus norvegicus La ribonucleoprotein domain family, member 1 (predicted) (Larp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666852-S	ILMN_52577	LOC317508	XM_228973.3	XM_228973.3		317508	62666852	XM_228973.3	LOC317508	XP_228973.2	ILMN_1362090	0005890528	S	3370	GGAGTCAGTGCTTTGAAAGGGGGCCCAAGTTGGTTCCAGTATGTCACTTT				Xq21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14503 (LOC317508), mRNA.					
Rattus norvegicus	RefSeq	GI_54262173-S	ILMN_270679	DYNLL1	NM_053319.2	NM_053319.2		58945	54262173	NM_053319.2	Dynll1	NP_445771.1	ILMN_1362990	0004560288	S	386	GCATGGACTGTGCCAAACACCCAGTGATCCATCCAAAAACAAGGACTGCA	12	+	42582644-42582693	12q16	Rattus norvegicus dynein light chain LC8-type 1 (Dynll1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence TAS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence TAS]; Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; The chemical reactions and pathways involving neurotransmitters, any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42133] [evidence TAS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence ISS]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Modulates the activity of nitric oxide synthase [goid 30235] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]	8kDLC; Dlc8; Pin; MGC72986; Dnclc1	8kDLC; Dlc8; Pin; MGC72986; Dnclc1
Rattus norvegicus	RefSeq	GI_61097925-S	ILMN_268187	RYK	NM_080402.1	NM_080402.1		140585	61097925	NM_080402.1	Ryk	NP_536327.1	ILMN_1350248	0002900358	S	1656	CAACTGCCCTGACGAACTGTTTGCTGTGATGGCCTGTTGCTGGGCCTTGG	8	+	107894305-107894331	8q32	Rattus norvegicus receptor-like tyrosine kinase (Ryk), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with Wnt-protein, a secreted growth factor involved in signaling [goid 17147] [evidence IEA]; Interacting selectively with Wnt-protein, a secreted growth factor involved in signaling [goid 17147] [evidence ISS]; Combining with a member of the Wnt family of signaling molecules to initiate a change in cell activity [goid 42813] [evidence IEA]; Combining with a member of the Wnt family of signaling molecules to initiate a change in cell activity [goid 42813] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642656-S	ILMN_54698	LOC361872	XM_342166.2	XM_342166.2		361872	62642656	XM_342166.2	LOC361872	XP_342167.1	ILMN_1357977	0005690577	S	1019	AACCCAGCAAGGGTCTGAGAGCAAGAGAGAGGCCCTCACTGCAGCGTGAG				2q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC361872), mRNA.					
Rattus norvegicus	RefSeq	GI_62647369	ILMN_277615	RGD1560028_PREDICTED	XM_575509.1	XM_575509.1		500157	62647369	XM_575509.1	RGD1560028_predicted	XP_575509.1	ILMN_1649935	0006660093	S	1435	CCTCAGCTGCATGATAAGTTTGAGGACAACCTGGGCTACAAGAGACCCTG	4	+	95019535-95019584	4q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C130060K24 gene (predicted) (RGD1560028_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18543364-S	ILMN_284900	FGF21	NM_130752.1	NM_130752.1		170580	18543364	NM_130752.1	Fgf21	NP_570108.1	ILMN_1369405	0002480450	S	553	CCAGATGTGGGTTCCTCCGACCCCCTGAGCATGGTAGAGCCTTTGCAAGG	1	-	96082499-96082548	1q22	Rattus norvegicus fibroblast growth factor 21 (Fgf21), mRNA.			The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665038-S	ILMN_291772	RGD1305094_PREDICTED	XR_008807.1	XR_008807.1		304649	109508653	XR_008807.1	RGD1305094_predicted		ILMN_1349585	0002470092	S	1071	TGAACAACAAAAACCAGGGGAGCTTCCTGTGGCCCCAAACCCCTCTTCAG				19q11	PREDICTED: Rattus norvegicus similar to CG2662-PA (predicted) (RGD1305094_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646393-S	ILMN_278621	CSE1L_PREDICTED	XM_001072176.1	XM_001072176.1		362273	109471352	XM_001072176.1	Cse1l_predicted	XP_001072176.1	ILMN_1355916	0000130075	S	3227	ACAACCCCATGTATGGCCATGGTCTCTGTGGAGCATTTGCACGGTTTGGG				3q42	PREDICTED: Rattus norvegicus chromosome segregation 1-like (S. cerevisiae) (predicted) (Cse1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651761-S	ILMN_269561	STK11_PREDICTED	XM_001076821.1	XM_001076821.1		314621	109481603	XM_001076821.1	Stk11_predicted	XP_001076821.1	ILMN_1366315	0003170672	S	1772	GGCTCTTGTGCCTATCCCCCCAAGTCCAGACACTAAGGACCGCTGGCGCA				7q11	PREDICTED: Rattus norvegicus serine/threonine kinase 11 (predicted) (Stk11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664969-S	ILMN_276474	ORC6L	NM_001033690.1	NM_001033690.1		291927	76096323	NM_001033690.1	Orc6l	NP_001028862.1	ILMN_1373022	0004120551	S	1086	GGCCTGTGCATCTGTCTGGGAGGTAAAGGCTGTGGAGTCTTCTCTAGGCT	19	-	23117193-23117242	19q11	Rattus norvegicus origin recognition complex, subunit 6 like (yeast) (Orc6l), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A multisubunit complex that is located at the replication origins of a chromosome in the nucleus [goid 5664] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124771	MGC124771
Rattus norvegicus	RefSeq	GI_58865375-A	ILMN_271236	TPST1	NM_001011903.1	NM_001011903.1		288617	58865375	NM_001011903.1	Tpst1	NP_001011903.1	ILMN_1376600	0006370095	S	1172	GATCCATACGCCAATCCCCCTAACTACGGAAAACCTGACCCCAAGATCCT	12	-	27607770-27607819	12q13	Rattus norvegicus tyrosylprotein sulfotransferase 1 (Tpst1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + protein tyrosine = adenosine 3',5'-bisphosphate + protein tyrosine-O-sulfate [goid 8476] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC125193	MGC125193
Rattus norvegicus	RefSeq	GI_62659797-S	ILMN_291908	EFCAB2_PREDICTED	XM_001059936.1	XM_001059936.1		289280	109499133	XM_001059936.1	Efcab2_predicted	XP_001059936.1	ILMN_1362422	0004760184	S	148	GGCGGAGGAAAAGGACCCGGAGAGTACAGAGGCAATAGTGGCAGAACTTC				13q26	PREDICTED: Rattus norvegicus EF-hand calcium binding domain 2 (predicted) (Efcab2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799408-S	ILMN_293235	FSTL1	NM_024369.2	NM_024369.2		79210	56799408	NM_024369.2	Fstl1	NP_077345.1	ILMN_1354884	0005700019	S	2106	GCGAGTCACTGCGGTCCTAGCTCTCCTATTTCTGGGTGTCCGTTTCCTTA	11	-	64681932-64681981	11q21	Rattus norvegicus follistatin-like 1 (Fstl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Frp; MGC93410; Fstl	Frp; MGC93410; Fstl
Rattus norvegicus	RefSeq	GI_62650925-S	ILMN_279455	RGD1565752_PREDICTED	XM_001080956.1	XM_001080956.1		299172	109479570	XM_001080956.1	RGD1565752_predicted	XP_001080956.1	ILMN_1365049	0005340433	S	815	GACGAAGGGCTCAGTGTCCTCAGAAAGGGACTATGAGGGTCTGGTCATGA				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (predicted) (RGD1565752_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_22219447-S	ILMN_272334	LOC259244	NM_147212.1	NM_147212.1		259244	22219447	NM_147212.1	LOC259244	NP_671745.1	ILMN_1363413	0000430358	S	560	ATCGTTGTCTCCAGGCCCGAGGTTGAAGAAAGGCCTGAGCCTCCAGTGCT	5	-	78163681-78163685:78164517-78164536:78164537-78164561	5q24	Rattus norvegicus alpha-2u globulin PGCL3 (LOC259244), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649097-S	ILMN_272334	LOC259244	NM_147212.1	NM_147212.1		259244	22219447	NM_147212.1	LOC259244	NP_671745.1	ILMN_1354655	0000520066	S	81	GGTCTGTGGCCATGCAGAAGAAGCTAGTTCCACAACAGGGAACCGTGATG	5	-	78166717-78166766	5q24	Rattus norvegicus alpha-2u globulin PGCL3 (LOC259244), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639095-S	ILMN_269044	SIX5_PREDICTED	XM_001075407.1	XM_001075407.1		308406	109461348	XM_001075407.1	Six5_predicted	XP_001075407.1	ILMN_1372641	0002680086	S	2080	CTGGGGACACAGGCCACCCATACTGTGCTGAGGCTACCAGACCCTGACCA				1q21	PREDICTED: Rattus norvegicus sine oculis-related homeobox 5 homolog (Drosophila) (predicted) (Six5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645132-S	ILMN_272168	PKP4_PREDICTED	XM_001058290.1	XM_001058290.1		295625	109469895	XM_001058290.1	Pkp4_predicted	XP_001058290.1	ILMN_1374052	0005130093	S	4231	GCAGCGCCATGCTCATCCCCCCTTTCACAGGACACTTCACTGCCATTTTC				3q21	PREDICTED: Rattus norvegicus plakophilin 4 (predicted) (Pkp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162307-S	ILMN_301955	DDIT3	NM_024134.1	NM_024134.1		29467	13162307	NM_024134.1	Ddit3	NP_077048.1	ILMN_1349910	0005900128	S	646	TCCCGGAGTGTACCCAGCACCATCACGCCAGTGCCAAGCATGTAATCTCC	7	+	67252413-67252462	7q22	Rattus norvegicus DNA-damage inducible transcript 3 (Ddit3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence IMP]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the transcription factor CREB [goid 32792] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter [goid 42789] [evidence IEA]; The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter [goid 42789] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]; Development, taking place during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48568] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter [goid 42789] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Chop10; MGC124604; Gadd153	Chop10; MGC124604; Gadd153
Rattus norvegicus	RefSeq	GI_47577568-S	ILMN_276348	OLR518	NM_001000676.1	NM_001000676.1		404879	47577568	NM_001000676.1	Olr518	NP_001000676.1	ILMN_1365710	0002340551	S	276	CCCTGGTTGTGTGACAGAGTTGTTTCTCTTAGTTACATTTGGAACCACAG	3	+	69968259-69968308	3q24	Rattus norvegicus olfactory receptor 518 (Olr518), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr518	Olr518
Rattus norvegicus	RefSeq	GI_62660061-S	ILMN_67434	LOC498320	XM_573546.1	XM_573546.1		498320	62660061	XM_573546.1	LOC498320	XP_573546.1	ILMN_1359430	0004150563	S	295	CGCTCCAAATGCTCTGGTTTCATTCCTGGGACTGAAAGGTCACCTTCATC					PREDICTED: Rattus norvegicus LOC498320 (LOC498320), mRNA.					
Rattus norvegicus	RefSeq	GI_14861867-S	ILMN_290911	PTPRV	NM_033099.1	NM_033099.1		64576	14861867	NM_033099.1	Ptprv	NP_149090.1	ILMN_1369422	0002480494	S	5310	CAGAGCTGGGAAGTGGCCTGCGCCCTGCTAGGCGTCATGTTCCAGCAAAT	13	-	48070574-48070593:48070594-48070623	13q13	Rattus norvegicus protein tyrosine phosphatase, receptor type, V (Ptprv), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the stopping or reduction in rate of the cell cycle [goid 6977] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A cell cycle checkpoint that arrests cell cycle progression G1 phase in response to DNA damage [goid 31571] [evidence ISS]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEP]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Esp	Esp
Rattus norvegicus	RefSeq	GI_62642628-S	ILMN_52952	LOC361781	XM_342077.2	XM_342077.2		361781	62642628	XM_342077.2	LOC361781	XP_342078.2	ILMN_1369990	0006370722	S	1208	GGGCAACTCTGCGGCCCGTGGCGGATGCTGATGACGGTATAGAGATGTTT					PREDICTED: Rattus norvegicus similar to proliferation associated SNF2-like protein (LOC361781), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662018-S	ILMN_279833	RGD1565615_PREDICTED	XM_001077454.1	XM_001077454.1		290458	109502924	XM_001077454.1	RGD1565615_predicted	XP_001077454.1	ILMN_1363882	0001410017	S	399	ACACCCCCACGATGGCCACCAATACCATCACTATGGCCGATACCGACACC				15q22	PREDICTED: Rattus norvegicus similar to tripartite motif-containing 52 (predicted) (RGD1565615_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654731-S	ILMN_49613	ENPP4_PREDICTED	XM_236955.4	XM_236955.4		301261	109485824	XM_236955.4	Enpp4_predicted	XP_236955.4	ILMN_1353344	0006520692	S	1244	GTGCTACATCCTGGGACTGAAACCACATCCCAACAACGGAACCTTCAGCC	9	+	12559211-12559260	9q12	PREDICTED: Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 4 (predicted) (Enpp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652299-S	ILMN_62500	TSPYL5_PREDICTED	XM_234776.4	XM_234776.4		314555	109480689	XM_234776.4	Tspyl5_predicted	XP_234776.4	ILMN_1372220	0002190670	S	1073	ATGGGTGTGGTCCATCCGGTCAAGTGGTGTCTCGCTCAGCTCCAATCCAG	7	-	69062206-69062255	7q22	PREDICTED: Rattus norvegicus TSPY-like 5 (predicted) (Tspyl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645234-S	ILMN_288895	RAPGEF4	XM_001060956.1	XM_001060956.1		252857	109470080	XM_001060956.1	Rapgef4	XP_001060956.1	ILMN_1354760	0006400136	S	3053	TTAGAGCCTCGCAGGCCATAGACATCTGCAGTGCCCAGAGTGATGCTCCG				3q22	PREDICTED: Rattus norvegicus Rap guanine nucleotide exchange factor (GEF) 4 (Rapgef4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62660402-S	ILMN_284484	RGD1311309_PREDICTED	XR_009111.1	XR_009111.1		364144	109500554	XR_009111.1	RGD1311309_predicted		ILMN_1348856	0003940161	S	8914	CTATTTCCATCACCAGACGCTAGGCCAGACGGGCAGTTTCGCGGTCATCG				14p11	PREDICTED: Rattus norvegicus similar to 2510002A14Rik protein (predicted) (RGD1311309_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665447-S	ILMN_288024	RGD1559896_PREDICTED	XM_001054336.1	XM_001054336.1		498967	109509060	XM_001054336.1	RGD1559896_predicted	XP_001054336.1	ILMN_1355122	0004560725	S	2771	AGGCAGCTCCAGGGCTCCGTGTCTTGCTCTTGGTGGCTGTGTCCAACAGA				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310022B05 (predicted) (RGD1559896_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666606-S	ILMN_264671	TCFE3_PREDICTED	XR_008119.1	XR_008119.1		317376	109511587	XR_008119.1	Tcfe3_predicted		ILMN_1373582	0004120438	S	3374	GCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTAAAAT				Xq13	PREDICTED: Rattus norvegicus transcription factor E3 (predicted) (Tcfe3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928793-S	ILMN_301967	IGHMBP2	NM_031586.1	NM_031586.1		29532	13928793	NM_031586.1	Ighmbp2	NP_113774.1	ILMN_1374282	0004590458	S	2915	AGCTCAGCAGCCAGAGGACAAGCAAGAAGAAGGAGAAGGAGAGGGGGACG	1	-	205793093-205793142	1q42	Rattus norvegicus immunoglobulin mu binding protein 2 (Ighmbp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	AEP; MGC124598	AEP; MGC124598
Rattus norvegicus	RefSeq	GI_62648101-S	ILMN_276331	LOC312678	XR_005442.1	XR_005442.1		312678	109472561	XR_005442.1	LOC312678		ILMN_1367630	0002970300	S	5517	ATAAACTGTGCAAAGAAGCAGGGGCCAGATAGCCCAGGCCACGCACCACC	4	+	156808719-156808768	4q42	PREDICTED: Rattus norvegicus similar to Retinoblastoma-binding protein 2 (RBBP-2) (LOC312678), misc RNA.					
Rattus norvegicus	RefSeq	GI_62662323-S	ILMN_266833	LOC685368	XM_001063509.1	XM_001063509.1		685368	109503104	XM_001063509.1	LOC685368	XP_001063509.1	ILMN_1353645	0003130671	S	95	ACACACTGGTGCCTTCTCTGGACAAAGGGTACCCATTGGTTGACTTAGCT	16	-	11734328-11734377	16p15	PREDICTED: Rattus norvegicus similar to Ral guanine nucleotide dissociation stimulator (RalGEF) (RalGDS) (LOC685368), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649025-S	ILMN_53300	LOC500469	XM_575833.1	XM_575833.1		500469	62649025	XM_575833.1	LOC500469	XP_575833.1	ILMN_1355882	0002320082	S	620	GGACATTGAACTGCCTGAGGATCCACCTATACCTCTCTTGGGCATATACC					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC500469), mRNA.					
Rattus norvegicus	RefSeq	GI_34865390-S	ILMN_294246	RGD1308746_PREDICTED	XM_001064780.1	XM_001064780.1		363111	109485103	XM_001064780.1	RGD1308746_predicted	XP_001064780.1	ILMN_1369428	0002470048	S	335	TCTGGAGACCGTGGGTTAGAACTCCTGGCGAGAAAGAGGAGCTGGCGGAA				8q31	PREDICTED: Rattus norvegicus similar to Down syndrome critical region protein 6 (predicted) (RGD1308746_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.17851	ILMN_161184	RN.17851	Rn.17851		Rn.17851		40817416	CK473318			ILMN_1530274	0005390102	S	164	AGGGATTCATTCTTGTCCTCATGTCTGCCAGTAAAAAGATGTGTCCACAT					AGENCOURT_17626078 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128488 5', mRNA					
Rattus norvegicus	RefSeq	GI_62643109-S	ILMN_268898	RGD1559945_PREDICTED	XM_001064047.1	XM_001064047.1		499558	109466242	XM_001064047.1	RGD1559945_predicted	XP_001064047.1	ILMN_1353431	0004150369	S	734	AGCGCTCGGGACATCAGCACCAGCACCATCAGCCCATTTGCAAGATCTGC				2q22	PREDICTED: Rattus norvegicus similar to hypothetical protein 9630025C22 (predicted) (RGD1559945_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666554-S	ILMN_59407	LOC501522	XM_576924.1	XM_576924.1		501522	62666554	XM_576924.1	LOC501522	XP_576924.1	ILMN_1374639	0004480092	S	386	GGGCACTGGAGAGTTGGTAATGCAATGACCTCAAAAGCCTGTGGAGCAGA					PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein L30 (LOC501522), mRNA.					
Rattus norvegicus	RefSeq	GI_47576510-S	ILMN_281854	OLR1622	NM_001000838.1	NM_001000838.1		405127	47576510	NM_001000838.1	Olr1622	NP_001000838.1	ILMN_1349822	0005890242	S	534	CTGTGATGTGGACCCACTAATGGCACTCTCCTGTACCCATACACCCATCG	15	+	26340858-26340907	15p14	Rattus norvegicus olfactory receptor 1622 (Olr1622), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1622	Olr1622
Rattus norvegicus	RefSeq	GI_62645980-S	ILMN_284568	NAT5_PREDICTED	XM_001055084.1	XM_001055084.1		362228	109470943	XM_001055084.1	Nat5_predicted	XP_001055084.1	ILMN_1368990	0005270397	S	545	GGACACTGAGAAGAAATCCATCATCCCATTACCTCATCCTGTGAGGCCTG				3q41	PREDICTED: Rattus norvegicus N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) (predicted), transcript variant 3 (Nat5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663419-S	ILMN_53419	LOC498730	XM_574005.1	XM_574005.1		498730	62663419	XM_574005.1	LOC498730	XP_574005.1	ILMN_1371234	0006860524	S	395	GGCGCCATCATTGAGGTGTTTGGTGACATCAGTGCCTTGAGGTTTGTCCC					PREDICTED: Rattus norvegicus LOC498730 (LOC498730), mRNA.					
Rattus norvegicus	RefSeq	GI_62664708-S	ILMN_56981	RGD1310645_PREDICTED	XM_225679.4	XM_225679.4		307213	109506857	XM_225679.4	RGD1310645_predicted	XP_225679.4	ILMN_1367687	0001400440	S	4237	ACAAGCATGGTCATCTACACCCAGGACGGCTCCCCAGCAGCCACAGTGAT	18	-	80748153-80748202	18q12.3	PREDICTED: Rattus norvegicus similar to zinc finger protein 407 (predicted) (RGD1310645_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576000-S	ILMN_279787	OLR952	NM_001000074.1	NM_001000074.1		288880	47576000	NM_001000074.1	Olr952	NP_001000074.1	ILMN_1363235	0000540280	S	580	GAAGTGACTGGTTTCTATGTTGCTCTGGTTACTCTACTGTCCACGTTGGC	7	+	4876790-4876839	7q11	Rattus norvegicus olfactory receptor 952 (Olr952), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr952; ratchr7-4876211-4877149_ORF	Olr952; ratchr7-4876211-4877149_ORF
Rattus norvegicus	RefSeq	GI_62662846-S	ILMN_50652	LOC498654	XM_573936.1	XM_573936.1		498654	62662846	XM_573936.1	LOC498654	XP_573936.1	ILMN_1350659	0006900136	S	1845	GCAGACCCACCAATCACACCAAACCCAGAAAGGATTCTGAACGTCTTTGC				16q12.4	PREDICTED: Rattus norvegicus similar to a disintegrin and metalloprotease domain 5 (LOC498654), mRNA.					
Rattus norvegicus	RefSeq	GI_62645150-S	ILMN_281184	RGD1560496_PREDICTED	XM_001055482.1	XM_001055482.1		499801	109469991	XM_001055482.1	RGD1560496_predicted	XP_001055482.1	ILMN_1352000	0006660129	S	3221	GGGTGGAATTGCCTATCAGATTTCCTGATCTCGATTGCTCAGAGTACTGC				3q21	PREDICTED: Rattus norvegicus similar to HELICARD (predicted) (RGD1560496_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643776-S	ILMN_64350	LOC295241	XM_227413.4	XM_227413.4		295241	109465078	XM_227413.4	LOC295241	XP_227413.3	ILMN_1371664	0004120746	S	379	TGGCGAGAGAAGGCGGACGCTTATGAGAGGGTGCTTCCGGGTCAGAGAAT	2	-	181380946-181380995	2q34	PREDICTED: Rattus norvegicus similar to Metaxin 1, isoform 2 (LOC295241), mRNA.					
Rattus norvegicus	RefSeq	GI_62649748-S	ILMN_68293	LOC297899	XM_232777.3	XM_232777.3		297899	62649748	XM_232777.3	LOC297899	XP_232777.3	ILMN_1372789	0004780086	S	1549	CCAGCATCCTTGACCTGAAGAGAATCCCCCACCGTCAGACATCCAGCGGA				5q36	PREDICTED: Rattus norvegicus similar to ornithine decarboxylase (LOC297899), mRNA.					
Rattus norvegicus	RefSeq	GI_62650516-S	ILMN_279611	ITGB1BP1_PREDICTED	XM_001070826.1	XM_001070826.1		298914	109479108	XM_001070826.1	Itgb1bp1_predicted	XP_001070826.1	ILMN_1367361	0002100037	S	736	GCCCAAGCAATCTGCAAGGTCTTATCCACAGCGTTTGACTCCGTGTTGAC				6q16	PREDICTED: Rattus norvegicus integrin beta 1 binding protein 1 (predicted) (Itgb1bp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577022-S	ILMN_262995	OLR285	NM_001000223.1	NM_001000223.1		293421	47577022	NM_001000223.1	Olr285	NP_001000223.1	ILMN_1369258	0001450138	S	761	CAGCATGCATGACTTATCTCCAGCCCAAATCCAGGTACTCACCAGACACA	1	+	166549056-166549105	1q33	Rattus norvegicus olfactory receptor 285 (Olr285), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr1-166658959-166659894_ORF; Olr285	ratchr1-166658959-166659894_ORF; Olr285
Rattus norvegicus	RefSeq	GI_62649758-S	ILMN_68811	RGD1564762_PREDICTED	XM_232771.4	XM_232771.4		313052	109475590	XM_232771.4	RGD1564762_predicted	XP_232771.4	ILMN_1351855	0004230048	S	5980	AGTAACTGGGCCTGCTGTCTGCGCCTTTGTAGTGACAGATGTGGCTGTAG	5	-	150780538-150780587	5q36	PREDICTED: Rattus norvegicus similar to erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1 (predicted) (RGD1564762_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28212265-S	ILMN_47875	HNRNPR	NM_175603.2	NM_175603.2		319110	62990188	NM_175603.2	Hnrnpr	NP_783193.2	ILMN_1366710	0006400110	S	1696	CACCAAGAGGCTCAAGGGGTGGCAGAGGGGGTCCTGCACAACAGCAGAGA	5	+	155085545-155085594	5q36	Rattus norvegicus heterogeneous nuclear ribonucleoprotein R (Hnrnpr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642906-S	ILMN_67225	RGD1560402_PREDICTED	XM_574850.2	XM_574850.2		499525	109464377	XM_574850.2	RGD1560402_predicted	XP_574850.1	ILMN_1357919	0004120019	S	1325	CTCCATCTGGTGATAGTGCAGTTAGTGGCCAAGACGCAGCATGAGGAATC	2	+	42483080-42483129	2q14	PREDICTED: Rattus norvegicus similar to Phosphoglycerate kinase 1 (predicted) (RGD1560402_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639739-I	ILMN_63986	TULP2_PREDICTED	XM_574448.1	XM_574448.1		361576	62639739	XM_574448.1	Tulp2_predicted	XP_574448.1	ILMN_1376044	0003060315	S	207	CAACAGCGACAGCTATTTGAGAAGAAGCAGCGCCGGAAACGCCAGGAGCC				1q22	PREDICTED: Rattus norvegicus tubby-like protein 2 (predicted) (Tulp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393270-S	ILMN_286046	DRD3	NM_017140.1	NM_017140.1		29238	8393270	NM_017140.1	Drd3	NP_058836.1	ILMN_1358974	0006900164	S	1108	GAGGTTCGAAAACTCAGCAACGGCAGGTTATCCACGTCCCTGAGGCTGGG	11	-	58448308-58448357	11q21	Rattus norvegicus dopamine receptor D3 (Drd3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; The process by which the renin-angiotensin system controls the rate of fluid intake and output into the blood [goid 2016] [evidence IEA]; The process by which the renin-angiotensin system controls the rate of fluid intake and output into the blood [goid 2016] [evidence ISS]; The process by which a G-protein coupled receptor is taken up into an endocytic vesicle [goid 2031] [evidence IDA]; The process by which a G-protein coupled receptor is taken up into an endocytic vesicle [goid 2031] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7195] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence TAS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30814] [evidence ISS]; Any process that stops or reduces the activity of a sodium:hydrogen antiporter, which catalyzes the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 32416] [evidence IMP]; Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours [goid 32922] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours [goid 32922] [evidence ISS]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence IMP]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]; Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 45187] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IEA]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence ISS]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50709] [evidence ISS]; Involuntary movement caused by the application of a stimulus to an organism and a subsequent movement. The signal processing of this movement takes place in the spinal cord [goid 50883] [evidence IEA]; Involuntary movement caused by the application of a stimulus to an organism and a subsequent movement. The signal processing of this movement takes place in the spinal cord [goid 50883] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence ISS]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60160] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60160] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60161] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60161] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; The process by which the renin-angiotensin system controls the rate of fluid intake and output into the blood [goid 2016] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours [goid 32922] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence IEA]; Involuntary movement caused by the application of a stimulus to an organism and a subsequent movement. The signal processing of this movement takes place in the spinal cord [goid 50883] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60160] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60161] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; The process by which the renin-angiotensin system controls the rate of fluid intake and output into the blood [goid 2016] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [pmid 8302280] [evidence IDA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30814] [pmid 8302280] [evidence IDA]; Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours [goid 32922] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [pmid 1975644] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [pmid 8302280] [evidence IMP]; The regulated release of acid by a cell or group of cells [goid 46717] [pmid 8302280] [evidence IDA]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence IEA]; Involuntary movement caused by the application of a stimulus to an organism and a subsequent movement. The signal processing of this movement takes place in the spinal cord [goid 50883] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60160] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60161] [evidence IEA]	A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D3 receptors [goid 1592] [evidence IEA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D3 receptors [goid 1592] [evidence ISS]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence TAS]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine [goid 35240] [evidence IMP]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D3 receptors [goid 1592] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D3 receptors [goid 1592] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [pmid 1975644] [evidence IDA]	D3 receptor	D3 receptor
Rattus norvegicus	RefSeq	GI_47577396-S	ILMN_277509	OLR447	NM_001000286.1	NM_001000286.1		295719	47577396	NM_001000286.1	Olr447	NP_001000286.1	ILMN_1357113	0005080408	S	656	TGTGCATCCTGGTGGCTATCTTGAAGATCAAGACTGCTGACGGGAGACAG	3	+	68854908-68854957	3q24	Rattus norvegicus olfactory receptor 447 (Olr447), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-68750625-68751569_ORF; Olr447	ratchr3-68750625-68751569_ORF; Olr447
Rattus norvegicus	RefSeq	GI_62660095-S	ILMN_70142	LOC497694	XM_579482.1	XM_579482.1		497694	62660095	XM_579482.1	LOC497694	XP_579482.1	ILMN_1372874	0004610452	S	1372	CCGGGGTTGAATCAGTTCCCAGCTCTGGTCCTGGAGAAGGAGAGGACACA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_024142 (LOC497694), mRNA.					
Rattus norvegicus	RefSeq	GI_62665014-S	ILMN_289493	NFIX	XM_001071608.1	XM_001071608.1		81524	109508625	XM_001071608.1	Nfix	XP_001071608.1	ILMN_1350522	0003940167	S	1571	GGGCAGGACTCGCTGAAGGAGTTCGTACAGTTTGTGTGCTCTGACGGCTC				19q11	PREDICTED: Rattus norvegicus nuclear factor I/X (Nfix), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576144	ILMN_265992	OLR1376	NM_214827.1	NM_214827.1		287084	47576144	NM_214827.1	Olr1376	NP_999992.1	ILMN_1649723	0004540400	S	878	GGAACAGGGACCTGAAAGCCGCTCTACAAAAATTTGTCCAGGGACACACT	10	-	12549782-12549831	10q12	Rattus norvegicus olfactory receptor 1376 (Olr1376), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-12550709-12549768_ORF; Olr1376	ratchr10-12550709-12549768_ORF; Olr1376
Rattus norvegicus	RefSeq	GI_62661143-S	ILMN_63320	RGD1563739_PREDICTED	XM_223826.4	XM_223826.4		289930	109501385	XM_223826.4	RGD1563739_predicted	XP_223826.3	ILMN_1356573	0002680278	S	581	CCATCCATACAACGCCAGGGCTTAGGACAAATGGGACTGATATCCTGAGC	15	-	15653883-15653932	15p15	PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (predicted) (RGD1563739_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657099-S	ILMN_302435	PYY	NM_001034080.1	NM_001034080.1		287730	77539743	NM_001034080.1	Pyy	NP_001029252.1	ILMN_1359664	0002030148	S	270	AGAAGTCCCCGCAGCTCTGTTCTCCAAACTGCTCTTCACAGACGACAGCG	10	-	91174667-91174716	10q32.1	Rattus norvegicus peptide YY (mapped) (Pyy), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a food stimulus [goid 32096] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IEA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]	The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IEA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence TAS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]	Yy; RATGHYY; Pyy; peptide-YY; GHYY	Yy; RATGHYY; Pyy; peptide-YY; GHYY
Rattus norvegicus	RefSeq	GI_62642966-S	ILMN_70188	LOC310360	XM_227080.3	XM_227080.3		310360	62642966	XM_227080.3	LOC310360	XP_227080.3	ILMN_1351535	0000380154	S	1044	AAAATGACCCACCAATGGGAGCAGCTGGCAAGCCCATGTGTGTTGAGAGC				2q16	PREDICTED: Rattus norvegicus similar to eukaryotic translation elongation factor 1 alpha 1 (LOC310360), mRNA.					
Rattus norvegicus	RefSeq	GI_62656552-S	ILMN_55561	SCARF1_PREDICTED	XM_220712.3	XM_220712.3		303313	62656552	XM_220712.3	Scarf1_predicted	XP_220712.3	ILMN_1354379	0006940072	S	1678	CTGCCCCCCACGACCACCACGAGACAGTCCCTATGACCCAAGAAGAATCA				10q24	PREDICTED: Rattus norvegicus scavenger receptor class F, member 1 (predicted) (Scarf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646854-S	ILMN_61785	RGD1563612_PREDICTED	XM_575380.2	XM_575380.2		500026	109471746	XM_575380.2	RGD1563612_predicted	XP_575380.2	ILMN_1369841	0002640039	S	3451	TGGCCACAACAGTTGCACAGTGCCCACCCTATGGCCTAGCTTCAGGTACT	4	+	33657929-33657978	4q21	PREDICTED: Rattus norvegicus similar to testhymin (predicted) (RGD1563612_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651757	ILMN_268633	MIDN_PREDICTED	XM_001076784.1	XM_001076784.1		314623	109481591	XM_001076784.1	Midn_predicted	XP_001076784.1	ILMN_1650299	0002100348	S	746	CGAGGCCGGAGCAGTCCGTTATGCAAGCCCTGGAAAGTTTGACTGAGACC				7q11	PREDICTED: Rattus norvegicus midnolin (predicted) (Midn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651755-S	ILMN_268633	MIDN_PREDICTED	XM_001076784.1	XM_001076784.1		314623	109481591	XM_001076784.1	Midn_predicted	XP_001076784.1	ILMN_1349697	0004570097	S	1894	CCCAGACATCCAGTCCGAGTTTGTGGTGGCTTAAAGAATCCCCTTGGGCC				7q11	PREDICTED: Rattus norvegicus midnolin (predicted) (Midn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638868-S	ILMN_48084	ZNF579_PREDICTED	XM_218200.3	XM_218200.3		308339	109458108	XM_218200.3	Znf579_predicted	XP_218200.1	ILMN_1374118	0002350019	S	1794	CCACCTTCCACCCTCCGAATTGAGCTCCCGGTTTGCAGTAAGGAAGAGGG	1	+	67589039-67589088	1q12	PREDICTED: Rattus norvegicus zinc finger protein 579 (predicted) (Znf579_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138629-S	ILMN_288814	SRR	NM_198757.2	NM_198757.2		303306	52138629	NM_198757.2	Srr	NP_942052.1	ILMN_1369482	0006400593	S	1749	TAAGCAGTGAACTTCCAGCCCACCAGTCCCAAGGAACACCTGGGAACGCC	10	-	62217709-62217758	10q24	Rattus norvegicus serine racemase (Srr), mRNA.		The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine [goid 9069] [evidence ISS]	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the reaction: L-threonine = D-threonine [goid 18114] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the synthesis of free D-serine from L-serine [goid 30378] [evidence ISS]	MGC94291	MGC94291
Rattus norvegicus	RefSeq	GI_47577008-S	ILMN_300830	OLR27	NM_001000936.1	NM_001000936.1		405258	47577008	NM_001000936.1	Olr27	NP_001000936.1	ILMN_1356414	0002450113	S	809	GAGTGTTTTCTGTGCTGTACATTGTGTTGCCTCCAGCACTTAATCCTGTG	1	-	142782908-142782957	1q32	Rattus norvegicus olfactory receptor 27 (Olr27), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr27	Olr27
Rattus norvegicus	RefSeq	GI_7549743-S	ILMN_279466	ARNT	NM_012780.1	NM_012780.1		25242	7549743	NM_012780.1	Arnt	NP_036912.1	ILMN_1353569	0000610270	S	2158	CTGAGACTGGACAGACAACAGGACAGTTCCAGACCCGGACAGCAGAGGGT	2	+	190389997-190390046	2q34	Rattus norvegicus aryl hydrocarbon receptor nuclear translocator (Arnt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence NAS]; Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor [goid 10575] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones [goid 46886] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an aryl hydrocarbon receptor [goid 17162] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	Arnt1	Arnt1
Rattus norvegicus	RefSeq	GI_62655429-S	ILMN_69180	LOC501187	XM_576615.1	XM_576615.1		501187	62655429	XM_576615.1	LOC501187	XP_576615.1	ILMN_1361564	0003390021	S	27	ACACGCCCGAAACCAGAACACTCTGTCCCCATAACTGACTGAAAGAGAGG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC501187), mRNA.					
Rattus norvegicus	RefSeq	GI_62662764-S	ILMN_60467	GTF2E2_PREDICTED	XM_224929.4	XM_224929.4		306516	109503468	XM_224929.4	Gtf2e2_predicted	XP_224929.2	ILMN_1375017	0006350341	S	1474	CAGCTGCAGTCCCTGACTTGTCTGGATGGGTGTTTGGGATGTGACAGAGA	16	-	62168807-62168856	16q12.3	PREDICTED: Rattus norvegicus general transcription factor II E, polypeptide 2 (beta subunit) (predicted) (Gtf2e2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650734-S	ILMN_51820	LOC500656	XM_576034.1	XM_576034.1		500656	62650734	XM_576034.1	LOC500656	XP_576034.1	ILMN_1358089	0002030154	S	542	GGTGGTGACAACCAGGTACTTACAGGGGACCATATGTACATCGACCAACG					PREDICTED: Rattus norvegicus similar to L-long term repeat (LOC500656), mRNA.					
Rattus norvegicus	RefSeq	GI_62662043-A	ILMN_300862	SLC15A1	NM_057121.1	NM_057121.1		117261	16923969	NM_057121.1	Slc15a1	NP_476462.1	ILMN_1376316	0005390725	S	1769	TCGAAGACATCCCACCCAACACGGTGAACATGGCCCTGCAGATCCCACAG	15	-	106552350-106552399	15q25	Rattus norvegicus solute carrier family 15 (oligopeptide transporter), member 1 (Slc15a1), transcript variant 1, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement [goid 5427] [evidence IEA]; Catalysis of the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement [goid 5427] [evidence ISS]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Pept1	Pept1
Rattus norvegicus	RefSeq	GI_62639005-S	ILMN_54880	RGD1559143_PREDICTED	XM_218239.4	XM_218239.4		292566	109458082	XM_218239.4	RGD1559143_predicted	XP_218239.4	ILMN_1370960	0000450278	S	1165	TTCAACTCGATCACGACCATCCCTCCAACCCAGGGAATCCGGGAGCTGCT	1	-	66099680-66099729	1q12	PREDICTED: Rattus norvegicus sim to ZFP371; Znf gonad protein 1 (predicted) (RGD1559143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664664-S	ILMN_53512	LOC498889	XM_574177.1	XM_574177.1		498889	62664664	XM_574177.1	LOC498889	XP_574177.1	ILMN_1365344	0000940577	S	852	GTTGACACACTACCAAATGTGTTTTAGCTGGCCCTGTTCTGGTGGTATCT				18q12.3	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC498889), mRNA.					
Rattus norvegicus	RefSeq	GI_62638997-S	ILMN_286140	RGD1563793_PREDICTED	XM_001067642.1	XM_001067642.1		502292	109461077	XM_001067642.1	RGD1563793_predicted	XP_001067642.1	ILMN_1353873	0002510403	S	891	ATGCAACCAGTGTGGGGAATCGTACGTGAACAGGTCCAGCCTCATACGTC				1q12	PREDICTED: Rattus norvegicus similar to AJ18 protein (predicted) (RGD1563793_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654476-S	ILMN_286049	RGD1562373_PREDICTED	XM_001062085.1	XM_001062085.1		501072	109484086	XM_001062085.1	RGD1562373_predicted	XP_001062085.1	ILMN_1373487	0000610619	S	512	GAGAGGCAACCCTGGGAATATTTCCTCCCGTCTTCTGGAGAACGAGAAGG	8	-	124113970-124114019	8q32	PREDICTED: Rattus norvegicus similar to 3-ketoacyl-CoA thiolase B, peroxisomal precursor (Beta-ketothiolase B) (predicted) (RGD1562373_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659000-S	ILMN_262553	RGD1310857	XM_001080302.1	XM_001080302.1		304542	109497478	XM_001080302.1	RGD1310857	XP_001080302.1	ILMN_1352482	0001940041	S	1772	ACCAGCCCTTCAGCCAAAAGCCACAGTCCACTTCAGAATGTCGGTGCCCC				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein D5Ertd33e (RGD1310857), mRNA.					
Rattus norvegicus	RefSeq	GI_47576352-S	ILMN_284607	OLR153	NM_001000167.1	NM_001000167.1		293301	47576352	NM_001000167.1	Olr153	NP_001000167.1	ILMN_1349544	0001980204	S	918	CCTCCTATTCTTCCCCAAGTCAACCATTGACATGACGCAGAGAGCTTGGG	1	+	162212815-162212864	1q32	Rattus norvegicus olfactory receptor 153 (Olr153), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162307080-162308054_ORF; Olr153	ratchr1-162307080-162308054_ORF; Olr153
Rattus norvegicus	RefSeq	GI_62655903-S	ILMN_60997	TMEM8_PREDICTED	XM_220264.4	XM_220264.4		303004	109487923	XM_220264.4	Tmem8_predicted	XP_220264.1	ILMN_1363248	0000940082	S	3763	CCCCTACTGGATCAATCGAGGTTTGAGGAGTGGGTTCTGGAGCCCTGGTC	10	+	15393776-15393825	10q12	PREDICTED: Rattus norvegicus transmembrane protein 8 (five membrane-spanning domains) (predicted) (Tmem8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_37620150-S	ILMN_263241	NRXN1	NM_021767.2	NM_021767.2		60391	37620150	NM_021767.2	Nrxn1	NP_068535.2	ILMN_1369278	0000380494	S	4949	GACGAGGAAAGCCCCCCACAAAGGAGCCTATCAGCCAGACCACGGATGAT	6	-	14051012-14051061	6q12	Rattus norvegicus neurexin 1 (Nrxn1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 18093521] [evidence IPI]	Nrxn1b	Nrxn1b
Rattus norvegicus	RefSeq	GI_62649247-S	ILMN_270798	MYSM1_PREDICTED	XM_001058020.1	XM_001058020.1		298247	109476785	XM_001058020.1	Mysm1_predicted	XP_001058020.1	ILMN_1375163	0001090687	S	2445	GCTCTCTCATAGCAGCGTCCCCATGGATAGAATATTTCGCCGTGATTCTG				5q33	PREDICTED: Rattus norvegicus myb-like, SWIRM and MPN domains 1 (predicted) (Mysm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718578	ILMN_69685	LOC501426	XM_576836.1	XM_576836.1		501426	62718578	XM_576836.1	LOC501426	XP_576836.1	ILMN_1649968	0006200100	S	1	ATGGACATCAGACTCAGCTTGGTTTTCCTTGTCATTTTTATAAAAGGAGT					PREDICTED: Rattus norvegicus similar to IG HEAVY CHAIN V REGION 5-84 PRECURSOR (LOC501426), mRNA.					
Rattus norvegicus	RefSeq	GI_13994170-S	ILMN_277927	SLC22A2	NM_031584.1	NM_031584.1		29503	13994170	NM_031584.1	Slc22a2	NP_113772.1	ILMN_1361093	0002360577	S	2050	CTCCACCACAACATCAAACCAAAATACCCAAGGGAGCTGTGGGCCAGGAC	1	-	42395720-42395769	1q11	Rattus norvegicus solute carrier family 22 (organic cation transporter), member 2 (Slc22a2), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence TAS]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence ISS]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]; Catalysis of the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage [goid 15101] [evidence TAS]; Catalysis of the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage [goid 15101] [evidence ISS]; Catalysis of the transfer of choline from one side of the membrane to the other. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 15220] [evidence IDA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]	OCT2; OCT2r; rOCT2	OCT2; OCT2r; rOCT2
Rattus norvegicus	RefSeq	GI_62638383-S	ILMN_281316	TBPL1_PREDICTED	XM_001056405.1	XM_001056405.1		292173	109460570	XM_001056405.1	Tbpl1_predicted	XP_001056405.1	ILMN_1372197	0003130372	S	937	TCCGAACTGCATCACTCGCTTCTCATGGATGCCGCGCTGTCTTGTGTGGG					PREDICTED: Rattus norvegicus TATA box binding protein-like 1 (predicted) (Tbpl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27684872-S	ILMN_50171	KCNV2_PREDICTED	XM_220024.2	XM_220024.2		294065	109459994	XM_220024.2	Kcnv2_predicted	XP_220024.1	ILMN_1372944	0006400019	S	1553	AGCTCAAAGCTTACGAGTACACCGCCATCCGTAGGGAACGGGGAAAAGTG	1	+	230845747-230845796	1q51	PREDICTED: Rattus norvegicus potassium channel, subfamily V, member 2 (predicted) (Kcnv2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981145-S	ILMN_272607	LDHB	NM_012595.1	NM_012595.1		24534	6981145	NM_012595.1	Ldhb	NP_036727.1	ILMN_1369814	0006020324	S	841	CCCCGTGTCTACAATGGTGAAGGGAATGTACGGCATCGAGAACGAAGTCT	4	-	180061893-180061921:180063891-180063911	4q44	Rattus norvegicus lactate dehydrogenase B (Ldhb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving lactate, the anion of lactic acid [goid 6089] [evidence IDA];  [goid 19642] [evidence IEA]; The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the oxidation of lactate to produce pyruvate [goid 4457] [evidence IDA]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence ISS]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IEA]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]	Ldh2	Ldh2
Rattus norvegicus	RefSeq	GI_62658957-S	ILMN_58053	RGD1306772_PREDICTED	XM_213787.4	XM_213787.4		288683	109496015	XM_213787.4	RGD1306772_predicted	XP_213787.2	ILMN_1368625	0003850372	S	1425	GGGTTCAGTTTCCACAGGGGTCTGAAGGTCTTAAGGGGTCCTGGGCTGTG	12	+	37121395-37121444	12q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110008J03 (predicted) (RGD1306772_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655504-S	ILMN_50721	MAN2A1	XM_343636.2	XM_343636.2		25478	62655504	XM_343636.2	Man2a1	XP_343637.2	ILMN_1364314	0004280402	S	6790	AGGAGCACAGATGGGGAAAGCCGGTGGTGGCAGTTTGCAGCTCACATCCA				9q37	PREDICTED: Rattus norvegicus mannosidase 2, alpha 1 (Man2a1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 6013] [evidence IEA]; The conversion of N-linked glycan structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking [goid 6491] [evidence IEA]; The conversion of N-linked glycan structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking [goid 6491] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vacuole [goid 7033] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vacuole [goid 7033] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IEA]; Catalysis of the hydrolysis of the terminal 1,3- and 1,6-linked alpha-D-mannose residues in the mannosyl-oligosaccharide Man(5)(GlcNAc)(3) [goid 4572] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of mannosyl compounds, substances containing a group derived from a cyclic form of mannose or a mannose derivative [goid 15923] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Catalysis of the hydrolysis of any N-glycosyl bond [goid 16799] [evidence IEA]; Catalysis of the hydrolysis of any N-glycosyl bond [goid 16799] [evidence ISS]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660540-S	ILMN_263039	STIM2_PREDICTED	XM_001053661.1	XM_001053661.1		117087	109500643	XM_001053661.1	Stim2_predicted	XP_001053661.1	ILMN_1355190	0001170154	S	3409	TGCTTAAACTGAGGTTGGGGGTGTGGGGATTCAGGCACTTGTTTACAGAC				14q11	PREDICTED: Rattus norvegicus stromal interaction molecule 2 (predicted) (Stim2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652123-S	ILMN_53138	LOC362879	XM_343208.2	XM_343208.2		362879	62652123	XM_343208.2	LOC362879	XP_343209.2	ILMN_1371578	0006760193	S	4382	GGCCAGGGGAAATCTGACCGATAATGGGAGAAGCACTCGCTACAAGAGGT					PREDICTED: Rattus norvegicus similar to chromosome 11 open reading frame 9 (LOC362879), mRNA.					
Rattus norvegicus	RefSeq	GI_62656145-S	ILMN_50636	MRPL55_PREDICTED	XM_213321.4	XM_213321.4		287356	109488143	XM_213321.4	Mrpl55_predicted	XP_213321.1	ILMN_1364041	0004480687	S	389	CACGACGCATGCTGGCGATGCCCCTAGACCTGGATGCCCTATCTCCAGAA	10	+	45508180-45508196:45508906-45508938	10q22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L55 (predicted) (Mrpl55_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666655-S	ILMN_65548	LOC501530	XM_580207.1	XM_580207.1		501530	62666655	XM_580207.1	LOC501530	XP_580207.1	ILMN_1372175	0002940288	S	1226	GCAGGCAGAAAGGATTCCAGCTTCCGTAGGTGTTCGCTGATTGGGATCCG				Xq13	PREDICTED: Rattus norvegicus LOC501530 (LOC501530), mRNA.					
Rattus norvegicus	RefSeq	GI_56090344-S	ILMN_263503	RGD1359349	NM_001007738.1	NM_001007738.1		361744	56090344	NM_001007738.1	RGD1359349	NP_001007739.1	ILMN_1369723	0004760097	S	1709	GGGACCATGTTCAAGAAAACAGCGGCCTGAAGGAAGGCGAAGAACCCTGC	1	+	228102294-228102343	1q51	Rattus norvegicus similar to hypothetical protein MGC34760 (RGD1359349), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94799	MGC94799
Rattus norvegicus	RefSeq	GI_40786504-S	ILMN_295164	MAN2B1	NM_199404.1	NM_199404.1		361378	40786504	NM_199404.1	Man2b1	NP_955436.1	ILMN_1361777	0000780184	S	2891	GCAGCCAACCAGCCCCTATCCAGGGTTTCCAGGCTCAAGTGGATGACAGA	19	-	24711922-24711971	19q11	Rattus norvegicus mannosidase 2, alpha B1 (Man2b1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 6013] [evidence IEA]; The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 6013] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence ISS]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IMP]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IDA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IDA]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]	MGC72561; Manb	MGC72561; Manb
Rattus norvegicus	RefSeq	GI_6981711-S	ILMN_297278	YWHAQ	NM_013053.1	NM_013053.1		25577	6981711	NM_013053.1	Ywhaq	NP_037185.1	ILMN_1365334	0003870500	S	1948	GGTGATATCCATATTTCTGCATTGTGGTACACTTGTCTAGGGTGCCTGGC	6	-	41945870-41945919	6q16	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide (Ywhaq), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	14-3-3t	14-3-3t
Rattus norvegicus	RefSeq	GI_62639745-S	ILMN_276796	RASIP1_PREDICTED	XM_001080759.1	XM_001080759.1		292912	109461939	XM_001080759.1	Rasip1_predicted	XP_001080759.1	ILMN_1374098	0006760195	S	3035	GGGAGCCCGCCTGGGTGTAGAGCATTTTGGGAGTTGTAGTTTTCCCCGAG				1q22	PREDICTED: Rattus norvegicus Ras interacting protein 1 (predicted) (Rasip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664957-S	ILMN_69976	LOC362127	XM_342428.2	XM_342428.2		362127	62664957	XM_342428.2	LOC362127	XP_342429.2	ILMN_1359964	0000130519	S	347	CATGATGCTGGAGGACTTCAAGAAGGACGTGGAGAACTCCCTTAGAGAAC					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC362127), mRNA.					
Rattus norvegicus	RefSeq	GI_34851380-S	ILMN_69976	LOC362127	XM_342428.2	XM_342428.2		362127	62664957	XM_342428.2	LOC362127	XP_342429.2	ILMN_1358417	0006660519	S	368	GAAGGACGTGGAGAACTCCCTTAGAGAACAAGTAGAAGCCTACAGAGAGG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC362127), mRNA.					
Rattus norvegicus	RefSeq	GI_62649385-S	ILMN_286662	MAGOH_PREDICTED	XM_001066689.1	XM_001066689.1		298385	109476972	XM_001066689.1	Magoh_predicted	XP_001066689.1	ILMN_1355011	0002650685	S	290	TGAGATCACCAAAGAAGATGACGCTCTGTGGCCCCCTCCTGATCGAGTGG				5q35	PREDICTED: Rattus norvegicus mago-nashi homolog, proliferation-associated (Drosophila) (predicted) (Magoh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657721-S	ILMN_283326	RGD1559597_PREDICTED	XM_001071420.1	XM_001071420.1		501765	109493952	XM_001071420.1	RGD1559597_predicted	XP_001071420.1	ILMN_1366433	0006040717	S	360	TGGCTGTAGATCTAGTGGGTTCGGATCCATGAATTGTGGAGTCTATGGCT				11q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310057N15 (predicted) (RGD1559597_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665656-A	ILMN_279838	H2-EA	NM_001008847.1	NM_001008847.1		294269	57114291	NM_001008847.1	H2-Ea	NP_001008847.1	ILMN_1376935	0005890411	S	905	CTCGCGGCAGATTCTCTGGTCTAATGTCTGGCTGGGGTTCTCCGTCTGCT	20	+	4641044-4641093	20p12	Rattus norvegicus histocompatibility 2, class II antigen E alpha (H2-Ea), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence ISS]		RT1-Dah; RT1-u; RT1-Dal; RT1-Dak; RT1-Daa; RT1-Dac; RT1-Dad; RT1-Dab; MGC112637; RT1-Dam; RT1-Daf; RT1-Dan	RT1-Dah; RT1-u; RT1-Dal; RT1-Dak; RT1-Daa; RT1-Dac; RT1-Dad; RT1-Dab; MGC112637; RT1-Dam; RT1-Daf; RT1-Dan
Rattus norvegicus	RefSeq	GI_52138627-S	ILMN_268984	LOC363897	XR_009066.1	XR_009066.1		363897	109497104	XR_009066.1	LOC363897		ILMN_1358168	0005890524	S	1720	GCATTAACGTTTGGGTGTAAAGATTGTGTGTCCATCCAACAGGGAGCCAC				12q12	PREDICTED: Rattus norvegicus similar to Ras-related protein Rap-1b precursor (GTP-binding protein smg p21B) (LOC363897), mRNA.					
Rattus norvegicus	RefSeq	GI_62655987-S	ILMN_271443	RGD1309452_PREDICTED	XM_001069047.1	XM_001069047.1		303070	109490591	XM_001069047.1	RGD1309452_predicted	XP_001069047.1	ILMN_1355007	0005720142	S	1281	GCCAAATCAGCTTGCCCCACACGCACAAAAACACAACTCCAGCCCCTGCC				10q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9530066K23 (predicted) (RGD1309452_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652145-S	ILMN_54365	LOC366862	XM_578651.1	XM_578651.1		366862	62652145	XM_578651.1	LOC366862	XP_578651.1	ILMN_1374254	0001410402	S	168	TGGCATGAAAGAGCAGCTGACACCTCTCACTGGGCACCACCCCAAGCATG					PREDICTED: Rattus norvegicus similar to bHLH protein MesP2 (LOC366862), mRNA.					
Rattus norvegicus	RefSeq	GI_58865723-A	ILMN_296845	MTMR12	NM_001012077.1	NM_001012077.1		310155	58865723	NM_001012077.1	Mtmr12	NP_001012077.1	ILMN_1376273	0001240332	S	1174	GACGCTGCCTGAAGAGAGCAATAGAGATTATAGAATGCCTGGAAGCGCAG	2	+	61720156-61720156:61722072-61722120	2q16	Rattus norvegicus myotubularin related protein 12 (Mtmr12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IEA]	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]	MGC109012	MGC109012
Rattus norvegicus	RefSeq	GI_62642669-S	ILMN_55350	LOC502490	XM_577971.1	XM_577971.1		502490	62642669	XM_577971.1	LOC502490	XP_577971.1	ILMN_1362029	0002650136	S	754	CACCCCACATAGCCATACAACTCTTAGCGGTGGATCACTTGGCTCGTGTG				2q11	PREDICTED: Rattus norvegicus similar to Ac1147 (LOC502490), mRNA.					
Rattus norvegicus	RefSeq	GI_62660585-S	ILMN_271616	FBXL5_PREDICTED	XM_001060082.1	XM_001060082.1		305424	109500735	XM_001060082.1	Fbxl5_predicted	XP_001060082.1	ILMN_1368423	0005290497	S	2646	GCTGTAGACACCTGCTTCCACGGCTGTCCCTAAACTGTTGAATTCGGGAG				14q21	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 5 (predicted) (Fbxl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928833-S	ILMN_293007	KCNJ3	NM_031610.1	NM_031610.1		50599	13928833	NM_031610.1	Kcnj3	NP_113798.1	ILMN_1373503	0002100706	S	3375	GCTAGACGGAGGTGATGATTAACAGACAGAAAAGGGGGACTAGTGGGGAA	3	+	37258584-37258633	3q12	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 3 (Kcnj3), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA];  [goid 15467] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA];  [goid 15467] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57113802-S	ILMN_268244	V1RG13	NM_001008931.1	NM_001008931.1		494279	57113802	NM_001008931.1	V1rg13	NP_001008931.1	ILMN_1349725	0002370128	S	554	TCATATTGTGCTTCTGTGATGGCCTGTGTCTGAGTCTCATGGCATGCTCA	1	-	71923568-71923617	1q21	Rattus norvegicus vomeronasal 1 receptor, G13 (V1rg13), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576258-S	ILMN_300658	OLR1304	NM_001000464.1	NM_001000464.1		300605	47576258	NM_001000464.1	Olr1304	NP_001000464.1	ILMN_1358110	0002650050	S	18	TTCCACCATGACTGAGTTTGTCCTCACTGGATTAACAGAGAAGCCAGGCC	8	-	42368752-42368801	8q22	Rattus norvegicus olfactory receptor 1304 (Olr1304), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1304	Olr1304
Rattus norvegicus	RefSeq	GI_62658656-S	ILMN_282208	RGD1564022_PREDICTED	XM_001075977.1	XM_001075977.1		288541	109496785	XM_001075977.1	RGD1564022_predicted	XP_001075977.1	ILMN_1355489	0003850450	S	2229	GATCATGGTGGCTGTGGAAGTATTCTCCATCTTGGCCTCCAGCACAGGTC				12q11	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (predicted) (RGD1564022_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577130-S	ILMN_302405	OLR32	NM_001000690.1	NM_001000690.1		404895	47577130	NM_001000690.1	Olr32	NP_001000690.1	ILMN_1359091	0003190671	S	945	AGTTCAAAGTATCTGTCCACGGTACAGTGGCTCACATTTTACAAACAAGT	1	-	142871442-142871491	1q32	Rattus norvegicus olfactory receptor 32 (Olr32), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr32	Olr32
Rattus norvegicus	RefSeq	GI_62665611-A	ILMN_268608	RT1-CE5	NM_001008843.1	NM_001008843.1		309607	57114335	NM_001008843.1	RT1-CE5	NP_001008843.1	ILMN_1376923	0002350368	S	519	GGCTGGTGAATTAGACTATTACAAGGCCTACCTGGAGGGTCCATGCCTGG	20	-	3512243-3512292	20p12	Rattus norvegicus RT1 class I, CE5 (RT1-CE5), transcript variant 1, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		MGC112896; RT1-C/E5; rt1-E2	MGC112896; RT1-C/E5; rt1-E2
Rattus norvegicus	RefSeq	GI_12711687-S	ILMN_295483	KCNN4	NM_023021.1	NM_023021.1		65206	12711687	NM_023021.1	Kcnn4	NP_075410.1	ILMN_1364008	0001240253	S	1689	GTGCTGCTGCTGTTCATGACCCCTCAAGCTCTGTTGGAAGAGGAGGTGCC	1	+	79628763-79628812	1q21	Rattus norvegicus potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 (Kcnn4), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; Any process involved in maintaining the equilibrium of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell [goid 6884] [evidence ISS]; The translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer [goid 45332] [evidence ISS]; The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin [goid 46541] [evidence ISS]; The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin [goid 46541] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence IEA]; The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin [goid 46541] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IDA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]	MGC156636; rSK4	MGC156636; rSK4
Rattus norvegicus	RefSeq	GI_47576620-S	ILMN_282735	OLR1679_PREDICTED	XM_001081288.1	XM_001081288.1		405193	109517650	XM_001081288.1	Olr1679_predicted	XP_001081288.1	ILMN_1354056	0006220195	S	112	GCCGTGATTGGAAACATTGCCATCATTCTGGCTTCCATATTAGACCCCTG				20p12	PREDICTED: Rattus norvegicus olfactory receptor 1679 (predicted) (Olr1679_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646603-S	ILMN_269855	RGD1559986_PREDICTED	XM_001055148.1	XM_001055148.1		362294	109472883	XM_001055148.1	RGD1559986_predicted	XP_001055148.1	ILMN_1366124	0004060692	S	4596	GTGAGGACTCCAGACTGCTTCTCATCCAAGTCCAGCATCGTGCCTAGAGG				4q11	PREDICTED: Rattus norvegicus similar to ubiquitin protein ligase E3C (predicted) (RGD1559986_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649307-S	ILMN_273930	RGD1562337_PREDICTED	XM_001058293.1	XM_001058293.1		313418	109476824	XM_001058293.1	RGD1562337_predicted	XP_001058293.1	ILMN_1369171	0006510278	S	3129	CTCACACAGGCACATCCCCAAATGCTGCCTTCAGTTTGATCTCAGCCGTC				5q34	PREDICTED: Rattus norvegicus similar to mesoderm induction early response 1 (MI-ER1) (predicted) (RGD1562337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576442-S	ILMN_279125	OLR158	NM_001000548.1	NM_001000548.1		365334	47576442	NM_001000548.1	Olr158	NP_001000548.1	ILMN_1353402	0006520347	S	462	GGTGCTGAGAAATGGCTTAGGTGTTATTCCAGTGCCTGTGCTTGCAGCCC	1	+	162287026-162287075	1q33	Rattus norvegicus olfactory receptor 158 (Olr158), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr158	Olr158
Rattus norvegicus	RefSeq	GI_47576138-S	ILMN_267544	OLR1380	NM_001000857.1	NM_001000857.1		405148	47576138	NM_001000857.1	Olr1380	NP_001000857.1	ILMN_1367474	0005420341	S	878	GGAACAGGGACTTGAAAGGGGCTCTACAGAAACTGGTCCACAGAAGTACC	10	-	12661377-12661426	10q12	Rattus norvegicus olfactory receptor 1380 (Olr1380), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1380	Olr1380
Rattus norvegicus	RefSeq	GI_62664204-S	ILMN_70239	HSPA9A_PREDICTED	XM_214583.4	XM_214583.4		291671	109506396	XM_214583.4	Hspa9a_predicted	XP_214583.3	ILMN_1358788	0004230685	S	3222	TGTATGCTGGATGTGGAAGCCCACTCAGGAAGCAGTGTGAAGCCAGGCGG	18	-	27418740-27418789	18p12	PREDICTED: Rattus norvegicus heat shock 70kDa protein 9A (predicted) (Hspa9a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34874092-S	ILMN_61992	LOC361036	XM_341311.1	XM_341311.1		361036	34874092	XM_341311.1	LOC361036	XP_341312.1	ILMN_1371180	0002370619	S	493	GCTGTGTGCCTCTCGGTTTCTCTGGTTGGCACAAAAATAACACGAATAGC				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC361036), mRNA.					
Rattus norvegicus	RefSeq	GI_62657594-S	ILMN_282536	CLDN17_PREDICTED	XM_001070924.1	XM_001070924.1		304125	109493939	XM_001070924.1	Cldn17_predicted	XP_001070924.1	ILMN_1364706	0006650465	S	517	CATCATCCGAGATTTCTACGACCCAACCATCCACGCAGGGCAGAAGCGGG				11q11	PREDICTED: Rattus norvegicus claudin 17 (predicted) (Cldn17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718239-S	ILMN_49686	LOC363363	XM_343698.3	XM_343698.3		363363	109513307	XM_343698.3	LOC363363	XP_343699.2	ILMN_1362164	0002570333	S	1697	GGCTGACCTGGACCTATGGTTTCATACCAGGTTTCACAAAACTCAGTGGG	Un|NW_047878.1	+	3242014-3242063		PREDICTED: Rattus norvegicus hypothetical LOC363363 (LOC363363), mRNA.					
Rattus norvegicus	RefSeq	GI_62653741-S	ILMN_68302	CSK_PREDICTED	XM_236290.3	XM_236290.3		315707	62653741	XM_236290.3	Csk_predicted	XP_236290.2	ILMN_1370626	0006860619	S	2690	GAATCGTAATAAACCACTCCATGAGGACACCGCCACCCAGCCTCGGCGCT				8q24	PREDICTED: Rattus norvegicus c-src tyrosine kinase (predicted) (Csk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648267-S	ILMN_280082	HEBP1_PREDICTED	XM_001071946.1	XM_001071946.1		362454	109474396	XM_001071946.1	Hebp1_predicted	XP_001071946.1	ILMN_1355495	0005360097	S	689	GCTGAACTGAGAACATCGTGGAAGAGTGCCATGTGTCCCCTGACTTGGGG				4q43	PREDICTED: Rattus norvegicus heme binding protein 1 (predicted) (Hebp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758911-S	ILMN_292972	KCNB2	NM_054000.1	NM_054000.1		117105	16758911	NM_054000.1	Kcnb2	NP_446452.1	ILMN_1349897	0000940546	S	3004	CCCAGGAGACACAGGTTATTGCCCCACTCGTGAGACCAGCATGTGACTAG	5	-	2684125-2684174	5q11	Rattus norvegicus potassium voltage gated channel, Shab-related subfamily, member 2 (Kcnb2), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv2.2	Kv2.2
Rattus norvegicus	RefSeq	GI_62661806-S	ILMN_62170	LOC498558	XM_579835.1	XM_579835.1		498558	62661806	XM_579835.1	LOC498558	XP_579835.1	ILMN_1374035	0002190537	S	1873	GCACACTCATAGAAGGAAGTCATCGAGAGGTGAAGAGTGCCTCAAGCAGG					PREDICTED: Rattus norvegicus LOC498558 (LOC498558), mRNA.					
Rattus norvegicus	RefSeq	GI_31343426-S	ILMN_285389	NUDT6	NM_181363.2	NM_181363.2		207120	31343426	NM_181363.2	Nudt6	NP_852028.1	ILMN_1363888	0005360091	S	618	CAAGTCAGAATTCAGGTCTCTGTTGAGCATCCGGCAGCAACACAGGAGCC	2	-	123947701-123947750	2q25	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 6 (Nudt6), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Gfg	Gfg
Rattus norvegicus	RefSeq	GI_12831212-S	ILMN_267286	MGAT5	XM_001057269.1	XM_001057269.1		65271	109498573	XM_001057269.1	Mgat5	XP_001057269.1	ILMN_1368244	0002350066	S	1637	AGGAGAGCCAGCTCATCTGCGAGCCGTCCTTCTTCCAGCACCTCAACAAG				13q11-q12	PREDICTED: Rattus norvegicus mannoside acetylglucosaminyltransferase 5 (Mgat5), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence ISS]	Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3(6)-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl,1,6(3))-beta-D-mannosyl-1,4-N-acetyl-beta-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-(N-acetyl-beta-D-glucosaminyl-1,6)-1,2-alpha-D-mannosyl-1,3(6)-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6(3))-beta-D-mannosyl-1,4-N-acetyl-beta-D-glucosaminyl-R. Only branched mannose glycopeptides with non-reducing N-acetylglucosamine terminal residues act as acceptors [goid 30144] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657246	ILMN_51747	LOC303614	XM_221048.3	XM_221048.3		303614	62657246	XM_221048.3	LOC303614	XP_221048.3	ILMN_1650884	0006100100	S	2017	GAGGCGTTGGAGATGGACTCCTGTACCTGCTGTGATCTGACCCACATTCC				10q32.1	PREDICTED: Rattus norvegicus similar to E3 ubiquitin ligase SMURF2 (predicted) (LOC303614), mRNA.					
Rattus norvegicus	RefSeq	GI_62666692-S	ILMN_67285	LOC501540	XM_580210.1	XM_580210.1		501540	62666692	XM_580210.1	LOC501540	XP_580210.1	ILMN_1356138	0003120075	S	396	CAGCTCTGTGAACTCCTTCCCGAAGGTCGGATGTTGTGATGTTGACATTC					PREDICTED: Rattus norvegicus LOC501540 (LOC501540), mRNA.					
Rattus norvegicus	RefSeq	GI_62645881-S	ILMN_272788	SLC4A11_PREDICTED	XM_001081183.1	XM_001081183.1		311423	109470835	XM_001081183.1	Slc4a11_predicted	XP_001081183.1	ILMN_1365689	0005270368	S	2916	CTACATCCGGAGAGTGCCCCAAAGGAAGATTCACTACTTCACGGGCCTGC				3q36	PREDICTED: Rattus norvegicus solute carrier family 4, sodium bicarbonate transporter-like, member 11 (predicted) (Slc4a11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090378-S	ILMN_264157	POMGNT1	NM_001007747.1	NM_001007747.1		362567	56090378	NM_001007747.1	Pomgnt1	NP_001007748.1	ILMN_1357872	0000630184	S	2569	GGACAGGCCCGTTCAGGGTCCATGTGCTGACAGACTCACTCAGAGACCTT	5	+	136439111-136439160	5q36	Rattus norvegicus protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase (Pomgnt1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence IEA]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence ISS]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,3-(R1)-beta-D-mannosyl-R2 = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3-(R1)-beta-D-mannosyl-R2 [goid 3827] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Catalysis of the reaction: beta-D-galactosyl-1,3-(N-acetyl-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R + UDP-N-acetyl-D-glucosamine = N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,3-(N-acetyl-beta-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R + UDP [goid 47223] [evidence ISS]	MGC94463	MGC94463
Rattus norvegicus	RefSeq	GI_62645782-S	ILMN_52524	LOC360372	XM_346666.2	XM_346666.2		360372	62645782	XM_346666.2	LOC360372	XP_346667.1	ILMN_1359544	0000050070	S	8	GACCCCAGTCCCTAGGCTGATGCTAAAGACAGTCATGTTGTGGAAGATGC					PREDICTED: Rattus norvegicus hypothetical LOC360372 (LOC360372), mRNA.					
Rattus norvegicus	RefSeq	GI_34328531-S	ILMN_53178	GABRA1	NM_183326.1	NM_183326.1		29705	34328531	NM_183326.1	Gabra1	NP_899155.1	ILMN_1348806	0001690594	S	1139	GGGTGACCCCGGCTTGGCCACTATTGCTAAAAGTGCGACCATAGAACCGA				10q21	Rattus norvegicus gamma-aminobutyric acid A receptor, alpha 1 (Gabra1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence TAS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence TAS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5237] [evidence TAS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Combining with benzodiazepines, a class of drugs with hypnotic, anxiolytic, anticonvulsive, amnestic and myorelaxant properties, to initiate a change in cell activity [goid 8503] [evidence TAS]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649856-S	ILMN_51068	RPL11_PREDICTED	XM_342949.2	XM_342949.2		362631	62649856	XM_342949.2	Rpl11_predicted	XP_342950.2	ILMN_1349262	0006450072	S	810	ATCGGGAACCTAGGAGAAAAATCCCGCCTCCTGACCCATAAGGCCACGGG				5q36	PREDICTED: Rattus norvegicus ribosomal protein L11 (predicted) (Rpl11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646753-S	ILMN_56845	RGD1563349_PREDICTED	XM_578226.2	XM_578226.2		502727	109471658	XM_578226.2	RGD1563349_predicted	XP_578226.2	ILMN_1368054	0000070451	S	1007	CCTCGGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGC	4	-	21089839-21089888	4q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330182L06 (predicted) (RGD1563349_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27720784	ILMN_277516	RGD1565455_PREDICTED	XM_001053390.1	XM_001053390.1		315809	109484912	XM_001053390.1	RGD1565455_predicted	XP_001053390.1	ILMN_1649778	0005720008	S	104	TGGTTGACCCCAATATCCTGAGGAACATGGACCCCAGCCGCAAACTCAGC				8q24	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1565455_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880524-S	ILMN_51373	LOC364012	XM_344152.1	XM_344152.1		364012	34880524	XM_344152.1	LOC364012	XP_344153.1	ILMN_1365806	0006660438	S	294	GCTCTGCACCAGCCAGACACTGCTGTCATCTTGAAACTCACCAGCCACAA					PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (LOC364012), mRNA.					
Rattus norvegicus	RefSeq	GI_19705534-S	ILMN_280422	PACS1	NM_134406.1	NM_134406.1		171444	19705534	NM_134406.1	Pacs1	NP_599233.1	ILMN_1358721	0004480148	S	3980	CTCCGTTGCCCCTCAGTGTTTCCTAGCAGTGTGGCACGGAACTGCACTTG	1	-	207751106-207751155	1q43	Rattus norvegicus phosphofurin acidic cluster sorting protein 1 (Pacs1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport [goid 30137] [evidence ISS]; A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport [goid 30137] [evidence IEA]; A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport [goid 30137] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport [goid 30137] [evidence IEA]	The process of directing proteins towards the Golgi using signals contained within the protein [goid 42] [evidence ISS]; The process of directing proteins towards the Golgi using signals contained within the protein [goid 42] [evidence IEA]; The process of directing proteins towards the Golgi using signals contained within the protein [goid 42] [evidence IEA]; The process of directing proteins towards the Golgi using signals contained within the protein [goid 42] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Pacs-1	Pacs-1
Rattus norvegicus	RefSeq	GI_34932821-S	ILMN_274671	RGD1563975_PREDICTED	XM_001066899.1	XM_001066899.1		298164	109512573	XM_001066899.1	RGD1563975_predicted	XP_001066899.1	ILMN_1352364	0000460097	S	1699	GAGCCAGAGCCAGAAGGAAGAGCCAAACAAGGTCCAAGCAAACCACCCGG					PREDICTED: Rattus norvegicus similar to testis expressed sequence 13B (predicted) (RGD1563975_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647346-S	ILMN_62672	HERC6	XM_342700.3	XM_342700.3		362376	109472112	XM_342700.3	Herc6	XP_342701.3	ILMN_1358935	0004760551	S	3853	CAGTCTTAGGGGATCCAACACTCTCCTCTGGCCTCCAAAACACACCATGG	4	-	87279244-87279293	4q24	PREDICTED: Rattus norvegicus potential ubiquitin ligase (Herc6), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658757-A	ILMN_293065	GTF2I	NM_001001512.2	NM_001001512.2		353256	78214355	NM_001001512.2	Gtf2i	NP_001001512.2	ILMN_1376358	0005290576	S	3780	CTGTATAAGGCAGCAGCTCTCAGCAGTTAGAGGGTGTGAGGGCACCGCTC	12	+	23545437-23545486	12q12	Rattus norvegicus general transcription factor II I (Gtf2i), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94055; Gtf2ird1	MGC94055; Gtf2ird1
Rattus norvegicus	RefSeq	GI_62646092-S	ILMN_68030	BPIL1_PREDICTED	XM_215892.4	XM_215892.4		296290	109469064	XM_215892.4	Bpil1_predicted	XP_215892.4	ILMN_1353253	0000730047	S	1368	TGTCCACTCTGAGGTCTTGGTCCGTGAGGGCTACGTGGTGGTATCCAGTG	3	+	144276304-144276331:144278955-144278976	3q41	PREDICTED: Rattus norvegicus bactericidal/permeability-increasing protein-like 1 (predicted) (Bpil1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659695-S	ILMN_265267	RGD1560672_PREDICTED	XM_001076595.1	XM_001076595.1		498270	109498997	XM_001076595.1	RGD1560672_predicted	XP_001076595.1	ILMN_1355962	0001690333	S	714	CGAAAATGCCAATCGAAAGCCACAGGGCGATGCTGGGGTACAAAATCCCC				13q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663335-S	ILMN_59744	LOC364683	XM_344578.2	XM_344578.2		364683	62663335	XM_344578.2	LOC364683	XP_344579.2	ILMN_1355616	0001410441	S	208	CAGGTGGTTTGCTAGAGGAGCAGAAAGCTGGTTCATCCCAGTGTCCCAGG				17p13	PREDICTED: Rattus norvegicus similar to kappaB-Ras1 protein (LOC364683), mRNA.					
Rattus norvegicus	RefSeq	GI_16758189-S	ILMN_294059	FADS1	NM_053445.1	NM_053445.1		84575	16758189	NM_053445.1	Fads1	NP_445897.1	ILMN_1355235	0001690450	S	3093	GCCTAGCCACGGGGGACATGGAGCAACCAGACTCAGAATGTGACAGTGAT	1	+	212685433-212685482	1q43	Rattus norvegicus fatty acid desaturase 1 (Fads1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms [goid 6636] [evidence IDA]; The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms [goid 6636] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus [goid 9744] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence IMP]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus [goid 33189] [evidence IEP]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water [goid 16717] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water [goid 16717] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651786-S	ILMN_59541	LOC500799	XM_576188.1	XM_576188.1		500799	62651786	XM_576188.1	LOC500799	XP_576188.1	ILMN_1360857	0005290301	S	1199	CCCCAGTAAACACCAAGTGCATCCTCGCCTGTGTGCGTGATTCGCTGAGC					PREDICTED: Rattus norvegicus similar to testis-specific gene (LOC500799), mRNA.					
Rattus norvegicus	RefSeq	GI_13928971-S	ILMN_282197	ST3GAL3	NM_031697.1	NM_031697.1		64445	13928971	NM_031697.1	St3gal3	NP_113885.1	ILMN_1361115	0003290139	S	1006	GGCACTCGATGGCTGTGATGAAGTGGCAGTCGCGGGCTTTGGCTATGACA	5	-	138404834-138404883	5q36	Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (St3gal3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein = CMP + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein [goid 8118] [evidence TAS]; Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein = CMP + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein [goid 8118] [evidence IEA]	Siat6	Siat6
Rattus norvegicus	RefSeq	GI_47576412-S	ILMN_287780	OLR1570	NM_001000041.1	NM_001000041.1		287968	47576412	NM_001000041.1	Olr1570	NP_001000041.1	ILMN_1353018	0005670139	S	657	TACTCGTGTGATTCTGGCTGTTCTTCATATGGGCTCATCTGAAAGTCGCC	11	+	83758504-83758553	11q23	Rattus norvegicus olfactory receptor 1570 (Olr1570), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1570; ratchr11-83815769-83816710_ORF	Olr1570; ratchr11-83815769-83816710_ORF
Rattus norvegicus	RefSeq	GI_62661930-S	ILMN_69283	LOC501999	XM_577426.1	XM_577426.1		501999	62661930	XM_577426.1	LOC501999	XP_577426.1	ILMN_1360862	0002570402	S	97	GTGAATATCGAGGGGATGTCCAAGCACACAAGTACTGTGTTGGGGGGCCC					PREDICTED: Rattus norvegicus similar to Mast cell protease IV precursor (rMCP-IV) (rMCP-4) (LOC501999), mRNA.					
Rattus norvegicus	RefSeq	GI_62650363-S	ILMN_262942	YPEL5	NM_001035221.1	NM_001035221.1		298792	78097107	NM_001035221.1	Ypel5	NP_001030298.1	ILMN_1350404	0005050086	S	1882	ATAGCTCTGCACTCTTGGTCAGCGGCATGGCTGTCTGGAGCAGTGGAAGT	6	-	22758598-22758647	6q13	Rattus norvegicus yippee-like 5 (Drosophila) (Ypel5), mRNA.					
Rattus norvegicus	RefSeq	GI_62652087-S	ILMN_289420	LOC685850	XM_001065502.1	XM_001065502.1		685850	109480552	XM_001065502.1	LOC685850	XP_001065502.1	ILMN_1371624	0007000168	S	2465	TGCCGCTGCACTGCTCGGGAAATGGCACTGAGGTTATGTACACCCTCCAG	7	-	46451896-46451945	7q21	PREDICTED: Rattus norvegicus similar to otogelin (LOC685850), mRNA.					
Rattus norvegicus	RefSeq	GI_62642015-S	ILMN_70011	LOC499333	XM_579949.1	XM_579949.1		499333	62642015	XM_579949.1	LOC499333	XP_579949.1	ILMN_1353388	0005080239	S	418	GCTACCAAGACTCATCCCTTCAAGCCTACAGAGCCATGTTCCCAAAGGGC					PREDICTED: Rattus norvegicus LOC499333 (LOC499333), mRNA.					
Rattus norvegicus	RefSeq	GI_62638242-S	ILMN_272920	TXLNB_PREDICTED	XM_001072039.1	XM_001072039.1		308622	109460477	XM_001072039.1	Txlnb_predicted	XP_001072039.1	ILMN_1361714	0006420035	S	3101	TGCATGGTGGCTGTTTGCCAATGCACATAAGGAGCTGGTAGGCAGTAGCC				1p12	PREDICTED: Rattus norvegicus taxilin beta (predicted) (Txlnb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656938-S	ILMN_55949	LOC497992	XM_573189.1	XM_573189.1		497992	62656938	XM_573189.1	LOC497992	XP_573189.1	ILMN_1365148	0004670088	S	716	CGCCTCCCCAGTGCACCACCACACATAGCTCTCTTTTCACTCAAACAGGA					PREDICTED: Rattus norvegicus similar to START domain containing 3 (LOC497992), mRNA.					
Rattus norvegicus	RefSeq	GI_31341482-S	ILMN_268592	SLC22A17	NM_177421.2	NM_177421.2		305886	31341482	NM_177421.2	Slc22a17	NP_803156.1	ILMN_1371566	0004200138	S	2093	TAGACGGAGAGGCAAGGCCACCCTGTACATACAAAAGGCTCCAAGGCGCC	15	-	33008885-33008934	15p13	Rattus norvegicus solute carrier family 22 (organic cation transporter), member 17 (Slc22a17), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	rBOCT; Boct; MGC116043	rBOCT; Boct; MGC116043
Rattus norvegicus	RefSeq	GI_62641499-S	ILMN_66205	LOC497739	XM_579444.1	XM_579444.1		497739	62641499	XM_579444.1	LOC497739	XP_579444.1	ILMN_1362666	0001660040	S	2027	GAGGAAGGGCTGCTTCATCCTCCTCACCTACCTTCTGGAAGACTTAGAGA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_021579 (LOC497739), mRNA.					
Rattus norvegicus	RefSeq	GI_62666842-S	ILMN_52062	LOC367795	XM_346305.2	XM_346305.2		367795	62666842	XM_346305.2	LOC367795	XP_346306.2	ILMN_1372204	0002350528	S	1	TGCATGCCCGTGTGCTCATTCGTGTGCTCATTAAAAATGTAAAGGCCAAG				Xq21	PREDICTED: Rattus norvegicus similar to ribosomal protein S27a (LOC367795), mRNA.					
Rattus norvegicus	RefSeq	GI_62661589	ILMN_276247	RGD1559605_PREDICTED	XM_001063071.1	XM_001063071.1		498529	109502533	XM_001063071.1	RGD1559605_predicted	XP_001063071.1	ILMN_1649874	0002940504	S	2630	GGGGGCAGGACACCCTGGAAGGGGGATGTTACACCTGGAGTTCAGATAAG				15p12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25477 isoform 2 (predicted) (RGD1559605_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667363-S	ILMN_58348	RGD1566108_PREDICTED	XM_217627.4	XM_217627.4		302810	109511193	XM_217627.4	RGD1566108_predicted	XP_217627.3	ILMN_1364138	0004850736	S	5442	GGGTCCCTCGGACTGGCTTCTATGCTTATGACCAAGACCAAACATGGGCC	X	+	134801180-134801229	Xq35	PREDICTED: Rattus norvegicus similar to BCL6 co-repressor-like 1 (predicted) (RGD1566108_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658193-S	ILMN_55211	DGCR8_PREDICTED	XM_221273.4	XM_221273.4		287954	109493563	XM_221273.4	Dgcr8_predicted	XP_221273.4	ILMN_1363922	0003780156	S	3265	GCGCATGTATGGTCGTGAGAGCAGCAAAATGGTCAAGCAGGAGACCTCTG	11	+	84726838-84726877:84728299-84728308	11q23	PREDICTED: Rattus norvegicus DiGeorge syndrome critical region gene 8 (predicted) (Dgcr8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649302-S	ILMN_276188	RGD1564040_PREDICTED	XM_001062502.1	XM_001062502.1		313410	109476847	XM_001062502.1	RGD1564040_predicted	XP_001062502.1	ILMN_1366126	0006220593	S	1473	CTCATTGGCACTCCCTTACTTCCTGTGCATCCGGGAGAACCCAGGTTGCC				5q33	PREDICTED: Rattus norvegicus similar to methylenetetrahydrofolate dehydrogenase (NAD) (EC 1.5.1.15)/methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) precursor (predicted) (RGD1564040_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644948-S	ILMN_57113	TTC16_PREDICTED	XM_345338.2	XM_345338.2		366019	62644948	XM_345338.2	Ttc16_predicted	XP_345339.2	ILMN_1355460	0003440204	S	2276	AAAGACAGAGGCTCCCAAGGGTCCCAGGAAGAGCACCAGCAGGCAAGAAG					PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 16 (predicted) (Ttc16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164042-S	ILMN_279537	V1RC17	NM_001009529.1	NM_001009529.1		494249	57164042	NM_001009529.1	V1rc17	NP_001009529.1	ILMN_1369874	0001980010	S	573	GCTAAGCACAAGTGCATACATGGTGGTTTTCTTGTTCAGACATCAGAGGC	4	+	87010710-87010759	4q24	Rattus norvegicus vomeronasal 1 receptor, C17 (V1rc17), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641915	ILMN_292798	GNA14	NM_001013151.1	NM_001013151.1		309242	61557108	NM_001013151.1	Gna14	NP_001013169.1	ILMN_1650309	0000360463	S	1357	CACAGGACCAAAGCAAGATGTCAAAGCTGCCAGGGACTTTATCCTCAAGC	1	+	219982482-219982531	1q43	Rattus norvegicus guanine nucleotide binding protein, alpha 14 (Gna14), mRNA.		The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]	Tieg3; MGC105546	Tieg3; MGC105546
Rattus norvegicus	RefSeq	GI_62658023-S	ILMN_281097	RGD1564688_PREDICTED	XM_001073321.1	XM_001073321.1		498099	109494537	XM_001073321.1	RGD1564688_predicted	XP_001073321.1	ILMN_1367571	0005130603	S	948	CCACCTTTGATGCTGGGGCTGGCATTGCTCTCGACGACAACTTTGTGAAG				11q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1564688_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649778-S	ILMN_69777	WDTC1_PREDICTED	XM_232730.4	XM_232730.4		313020	109475611	XM_232730.4	Wdtc1_predicted	XP_232730.3	ILMN_1352226	0002940458	S	2077	TTCTTCATCTGGGAAAAGGAGACCACCAACCTAGTCCGAGTGCTCCAGGG	5	+	151831340-151831389	5q36	PREDICTED: Rattus norvegicus WD and tetratricopeptide repeats 1 (predicted) (Wdtc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742676-S	ILMN_266768	PSMC4	NM_057122.1	NM_057122.1		117262	25742676	NM_057122.1	Psmc4	NP_476463.1	ILMN_1362352	0006860348	S	1155	GAGTGGAATGTTGGCTGTCCGTGAGAACCGCTACATTGTCCTGGCCAAGG	1	-	83151301-83151350	1q21	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase, 4 (Psmc4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence TAS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	Tbp7	Tbp7
Rattus norvegicus	RefSeq	GI_62643419-S	ILMN_69675	PCDH18_PREDICTED	XM_227117.4	XM_227117.4		295027	109464728	XM_227117.4	Pcdh18_predicted	XP_227117.4	ILMN_1357835	0002760176	S	4673	CCAGCATGGAGTGTTTATTAACAGTGATCTCCCCCTCCGGGGTAGTAAAC	2	-	138615692-138615741	2q26	PREDICTED: Rattus norvegicus protocadherin 18 (predicted) (Pcdh18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164118-S	ILMN_263113	ENOPH1	NM_001009391.1	NM_001009391.1		305177	57164118	NM_001009391.1	Enoph1	NP_001009391.1	ILMN_1357680	0002970731	S	1395	TGAGTGGAACAGCTGAGGCCGAGGTGGGCACCCTAACCCTGTCAGTGTCA	14	-	10833890-10833939	14p22	Rattus norvegicus enolase-phosphatase 1 (Enoph1), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence IEA]; The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine [goid 19509] [evidence ISS]; The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine [goid 19509] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2-phosphoglycolate + H2O = glycolate + phosphate [goid 8967] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reactions: 5-(methylthio)-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate (1a) 5-(methylthio)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate (1b) 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate [goid 43874] [evidence ISS]	MGC105720	MGC105720
Rattus norvegicus	RefSeq	GI_13928895-S	ILMN_278561	FXYD1	NM_031648.1	NM_031648.1		58971	13928895	NM_031648.1	Fxyd1	NP_113836.1	ILMN_1372940	0001050315	S	180	CCGGTGCAAATTCAACCAACAGCAGAGAACTGGGGAACCCGACGAAGAGG	1	-	86095740-86095763:86096604-86096629	1q21	Rattus norvegicus FXYD domain-containing ion transport regulator 1 (Fxyd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IDA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	Plm	Plm
Rattus norvegicus	RefSeq	GI_62655042-S	ILMN_52639	LOC367265	XM_576564.1	XM_576564.1		367265	62655042	XM_576564.1	LOC367265	XP_576564.1	ILMN_1367576	0000520148	S	119	CTGCTCTGAAGACCTGCATACTACTCACCGGATGCCCATTGCTCGTCCCG				9q22	PREDICTED: Rattus norvegicus similar to Zgc:73149 protein (LOC367265), mRNA.					
Rattus norvegicus	RefSeq	GI_13592080-S	ILMN_285122	SCTR	XM_001054266.1	XM_001054266.1		81779	109498521	XM_001054266.1	Sctr	XP_001054266.1	ILMN_1361990	0004670369	S	1389	CTTCAATAACTCCTTCAGCAACGCCACCAACGGCCCCACCCACAGCACCA					PREDICTED: Rattus norvegicus secretin receptor (Sctr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA];  [goid 4999] [evidence IEA]; Combining with secretin to initiate a change in cell activity [goid 15055] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62645904-S	ILMN_274084	RGD1564425_PREDICTED	XM_001081206.1	XM_001081206.1		296169	109470849	XM_001081206.1	RGD1564425_predicted	XP_001081206.1	ILMN_1358714	0006130497	S	557	TCTCAGGCCATGCTGAATGCTGTGGACCAGGATGCCATGTCCAGTATGGG				3q36	PREDICTED: Rattus norvegicus similar to Proteasome subunit beta type 3 (Proteasome theta chain) (predicted) (RGD1564425_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638668	ILMN_48420	THBS2	XM_214778.4	XM_214778.4		292406	109457898	XM_214778.4	Thbs2	XP_214778.2	ILMN_1650153	0000630114	S	4106	TCCAGTGCCTTCCGAGGCTAAGCACCTAGGGAGCCCCAAGAGGAGCATCA	1	-	53586187-53586236	1q12	PREDICTED: Rattus norvegicus thrombospondin 2 (Thbs2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IDA]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence IMP]			
Rattus norvegicus	RefSeq	GI_62666959-S	ILMN_266536	STARD8_PREDICTED	XM_001068833.1	XM_001068833.1		312113	109512044	XM_001068833.1	Stard8_predicted	XP_001068833.1	ILMN_1368946	0002690438	S	3478	CTCACTCATATTTGCCGCGCTGACCTCAGGGGCCGTTCTCCTGACTGGTA				Xq31	PREDICTED: Rattus norvegicus START domain containing 8 (predicted) (Stard8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758677-S	ILMN_270802	PLOD1	NM_053827.1	NM_053827.1		116552	16758677	NM_053827.1	Plod1	NP_446279.1	ILMN_1358231	0007050193	S	2714	GGGTCAACCAACTTACCCCAACTTCACCCCTGCCTGGACTGTTGATACGC				5q36	Rattus norvegicus procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 (Plod1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The hydroxylation of peptidyl-lysine to form peptidyl-hydroxylysine [goid 17185] [evidence IDA]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with ferrous iron, Fe(II) [goid 8198] [evidence IMP]; Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2 [goid 8475] [evidence IMP]; Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2 [goid 8475] [evidence IDA]; Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2 [goid 8475] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IMP]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IMP]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Plod	Plod
Rattus norvegicus	RefSeq	GI_62662174-S	ILMN_296444	RFT1_PREDICTED	XM_001063006.1	XM_001063006.1		290552	109503812	XM_001063006.1	Rft1_predicted	XP_001063006.1	ILMN_1357141	0002190368	S	1446	CTGCTCCTGTCACCAGTTCTTCTTGGAGTATTCGTCCTCAGTGCGGGCAT				16p16	PREDICTED: Rattus norvegicus RFT1 homolog (S. cerevisiae) (predicted) (Rft1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393405-S	ILMN_276285	GAD1	NM_017007.1	NM_017007.1		24379	8393405	NM_017007.1	Gad1	NP_058703.1	ILMN_1351478	0006660048	S	2943	TCCCCCCTCAGGCTGTACGTCAGGTGTTCTCAAAGCTTTTCTAGTAACTG	3	+	52829783-52829832	3q21	Rattus norvegicus glutamic acid decarboxylase 1 (Gad1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42136] [evidence IEA]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]	Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2 [goid 4351] [evidence IDA]; Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2 [goid 4351] [evidence ISS]; Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2 [goid 4351] [evidence IEA]; Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2 [goid 4351] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	Gad67	Gad67
Rattus norvegicus	RefSeq	GI_62638642-S	ILMN_264849	RGD1561388_PREDICTED	XM_001054863.1	XM_001054863.1		499042	109460837	XM_001054863.1	RGD1561388_predicted	XP_001054863.1	ILMN_1348925	0004590068	S	637	CAAACGAGGCAGGATCCCAGTCTGCTCACGTGGCTGCTGGCTAGCAAAAA				1q12	PREDICTED: Rattus norvegicus similar to Afadin (Af-6 protein) (predicted) (RGD1561388_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654267-S	ILMN_48636	RBM5	XM_217263.4	XM_217263.4		300996	109483876	XM_217263.4	Rbm5	XP_217263.3	ILMN_1358075	0001980035	S	2225	ATTCCAGAGCCCCCAGAGCCCAAGCGCAAGAAACAGTTCGATGCTGGCAC	8	-	112997830-112997879	8q32	PREDICTED: Rattus norvegicus RNA binding motif protein 5 (Rbm5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079144-S	ILMN_294911	TMEM123	NM_001014205.1	NM_001014205.1		363013	62079144	NM_001014205.1	Tmem123	NP_001014227.1	ILMN_1375096	0004730292	S	2241	CTGCTTCCTGTGCAAAATACAGGTCAGGGCCTTGAGGCAATGAGGACCTC	8	+	4632407-4632456	8q11	Rattus norvegicus transmembrane protein 123 (Tmem123), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	RGD1305625	RGD1305625
Rattus norvegicus	RefSeq	GI_51948517-S	ILMN_274301	COPS4	NM_001004275.1	NM_001004275.1		360915	51948517	NM_001004275.1	Cops4	NP_001004275.1	ILMN_1368937	0002970112	S	1393	AAGCAGTGCAGCCTTGAAGCAGTAGCTCCCGTGCCGCCTGGGTCTATGTT	14	-	10330000-10330049	14p22	Rattus norvegicus COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) (Cops4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence ISS]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94896	MGC94896
Rattus norvegicus	RefSeq	GI_62639268-S	ILMN_273565	RGD1560355_PREDICTED	XM_001076504.1	XM_001076504.1		502308	109461406	XM_001076504.1	RGD1560355_predicted	XP_001076504.1	ILMN_1362138	0001190139	S	469	GACCAGAGCGCCTGTTTTCAGGGCAACGGCCGGATGACCATTGGCAACTT				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30469 (predicted) (RGD1560355_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644979-S	ILMN_58659	LOC499785	XM_580016.1	XM_580016.1		499785	62644979	XM_580016.1	LOC499785	XP_580016.1	ILMN_1353417	0002060398	S	158	GGGAACTGGGGTCAAGTTTGTGGCTTCCTGTTGGCTTCTGTGAGCACGGC					PREDICTED: Rattus norvegicus LOC499785 (LOC499785), mRNA.					
Rattus norvegicus	RefSeq	GI_62642713-S	ILMN_57568	CSPG2	XM_215451.4	XM_215451.4		114122	109464242	XM_215451.4	Cspg2	XP_215451.4	ILMN_1373952	0002100600	S	11287	GGAAGAGCAGACTGGGGTTGGTCCTATGTTGACTGTTTCTCACAGAACCT	2	-	19712943-19712992	2q12	PREDICTED: Rattus norvegicus chondroitin sulfate proteoglycan 2 (Cspg2), mRNA.					
Rattus norvegicus	RefSeq	GI_62718471-S	ILMN_267433	LOC304551	XR_009380.1	XR_009380.1		304551	109497532	XR_009380.1	LOC304551		ILMN_1367899	0002320372	S	6279	AGTGGATTGTAGCAGCCGCAGTGGGAAGGAGGGGGACAACGTCTCTGTCA					PREDICTED: Rattus norvegicus similar to Myosin-18B (Myosin XVIIIb) (LOC304551), mRNA.					
Rattus norvegicus	RefSeq	GI_62644095-S	ILMN_59005	IGSF3_PREDICTED	XM_227520.4	XM_227520.4		295325	109465348	XM_227520.4	Igsf3_predicted	XP_227520.4	ILMN_1356390	0000520131	S	4477	CCAGCCAGTCGGTTAGGGAGGCAGCAAAAGGCTTCAGTCCTATCCTTGCC	2	+	196527453-196527502	2q34	PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 3 (predicted) (Igsf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652238-S	ILMN_59117	LOC366902	XM_345827.2	XM_345827.2		366902	62652238	XM_345827.2	LOC366902	XP_345828.2	ILMN_1352208	0000870121	S	33	TTCCCGCAGAATGTGGACACTGGCTCTGGAAAGCTCCAAGAGGCCTTCAG				7q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC366902), mRNA.					
Rattus norvegicus	RefSeq	GI_62651813-S	ILMN_60989	LOC362845	XM_343177.3	XM_343177.3		362845	109480311	XM_343177.3	LOC362845	XP_343178.2	ILMN_1351368	0005050048	S	1654	CACGAACGAATCCACAGTAGCGAGAGACCCTATGAGTGCGAGACGTGCGG	7	-	13569636-13569685	7q11	PREDICTED: Rattus norvegicus similar to zinc finger protein 709 (LOC362845), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651584-I	ILMN_48796	TXNDC7	XM_576132.1	XM_576132.1		286906	62651584	XM_576132.1	Txndc7	XP_576132.1	ILMN_1375568	0001230300	S	1953	CACTGGTGACTGTTAGGCTCGGGTTTTCAGTGTGTTCTCATTATCTCCCA					PREDICTED: Rattus norvegicus thioredoxin domain containing 7 (Txndc7), mRNA.					
Rattus norvegicus	RefSeq	Rn.8522	ILMN_277685	GATAD2A	NM_001013881.1	NM_001013881.1		290669	62078496	NM_001013881.1	Gatad2a	NP_001013903.1	ILMN_1530408	0004570524	S	2292	AAAATTTCTATCCTTTTTCTCTTCATTTTGATGGACACAATCTCAAGATG	16	+	20003071-20003120	16p14	Rattus norvegicus GATA zinc finger domain containing 2A (Gatad2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process by which the edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove [goid 1842] [evidence IEA]; The process by which the edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove [goid 1842] [evidence ISS]; The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form [goid 10172] [evidence IEA]; The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form [goid 10172] [evidence ISS]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence IEA]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence ISS]; The joining together of the neural folds of the rostral opening of the neural tube. The anterior neuropore appears before the process of neural tube closure is complete [goid 21506] [evidence IEA]; The joining together of the neural folds of the rostral opening of the neural tube. The anterior neuropore appears before the process of neural tube closure is complete [goid 21506] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]	MGC109147; RGD1310596	MGC109147; RGD1310596
Rattus norvegicus	RefSeq	GI_62078496-S	ILMN_277685	GATAD2A	NM_001013881.1	NM_001013881.1		290669	62078496	NM_001013881.1	Gatad2a	NP_001013903.1	ILMN_1354153	0000430300	S	2397	AGTCAGCAGGGCTTACTCCCTCTTAGCCACAGGGATGTCTGAAAGGGCTG	16	+	20003176-20003225	16p14	Rattus norvegicus GATA zinc finger domain containing 2A (Gatad2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process by which the edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove [goid 1842] [evidence IEA]; The process by which the edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove [goid 1842] [evidence ISS]; The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form [goid 10172] [evidence IEA]; The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form [goid 10172] [evidence ISS]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence IEA]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence ISS]; The joining together of the neural folds of the rostral opening of the neural tube. The anterior neuropore appears before the process of neural tube closure is complete [goid 21506] [evidence IEA]; The joining together of the neural folds of the rostral opening of the neural tube. The anterior neuropore appears before the process of neural tube closure is complete [goid 21506] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]	MGC109147; RGD1310596	MGC109147; RGD1310596
Rattus norvegicus	Unigene	Rn.25117	ILMN_161141	RN.25117	Rn.25117		Rn.25117		21990685	BQ782213			ILMN_1530199	0001980037	S	472	AATATTTATTTTGCTTCTTTGTTTCCCTCCAGTGTTAATCCTGCTAATGT					UI-R-FF0-cpj-o-12-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cpj-o-12-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_58865709-A	ILMN_294362	UROS	NM_001012068.1	NM_001012068.1		309070	58865709	NM_001012068.1	Uros	NP_001012068.1	ILMN_1376774	0006550044	S	1245	GCATGCACATCTGTGTGCCACCTGCATACCTGGTGCCTGGAGAAGCAAGG	1	-	193185228-193185277	1q41	Rattus norvegicus uroporphyrinogen III synthase (Uros), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6779] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6779] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: hydroxymethylbilane = uroporphyrinogen-III + H2O [goid 4852] [evidence IEA]; Catalysis of the reaction: hydroxymethylbilane = uroporphyrinogen-III + H2O [goid 4852] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576072-S	ILMN_283191	OLR1413	NM_214821.1	NM_214821.1		252887	47576072	NM_214821.1	Olr1413	NP_999986.1	ILMN_1350300	0000130538	S	761	GGCCCCTTGTCTACACCTACATGTTACCTGCTTCCTATCACTCACCAGGC	10	-	44096022-44096071	10q22	Rattus norvegicus olfactory receptor 1413 (Olr1413), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olfr30; TPCR05	Olfr30; TPCR05
Rattus norvegicus	RefSeq	GI_61098453-S	ILMN_49325	MAG	NM_017190.4	NM_017190.4		29409	77416363	NM_017190.4	Mag	NP_058886.1	ILMN_1374620	0000610687	S	2016	TGAGTACGCAGAAATCCGAGTCAAGTGAGGAAGCTGGGGGCTGGCCCTGT	1	-	85954920-85954942:85954943-85954969	1q21	Rattus norvegicus myelin-associated glycoprotein (Mag), mRNA.	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34861480-S	ILMN_161826	LOC365977	XM_345312.1	XM_345312.1			34861480	XM_345312.1	LOC365977		ILMN_2040121	0000130670	S	896	GAGGGAAAGTTTGGGCAGCCATGGGAGAAGACGAGCTGCTTCAAAGGGCG					Rattus norvegicus similar to Dual specificity phosphatase 14 (LOC365977), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639021-S	ILMN_290981	RGD1565248_PREDICTED	XR_008687.1	XR_008687.1		289303	109461132	XR_008687.1	RGD1565248_predicted		ILMN_1354965	0000070541	S	2234	CTTTGTCCTGGGATACTTGGACTGCTTGGCCCTTGGAAGCTTCACTACGG				1q21	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN2) (predicted) (RGD1565248_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664977-S	ILMN_48236	LOC498924	XM_574212.1	XM_574212.1		498924	62664977	XM_574212.1	LOC498924	XP_574212.1	ILMN_1364654	0004590082	S	834	GCCTACAGACAAACGTCATCCCCTGAAACTGTCCTAAACAAGGGGCAGGC				19q11	PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC498924), mRNA.					
Rattus norvegicus	RefSeq	GI_62660756-S	ILMN_53675	RGD1560273_PREDICTED	XM_579821.2	XM_579821.2		498405	109499990	XM_579821.2	RGD1560273_predicted	XP_579821.1	ILMN_1352842	0005420358	S	787	AAAGAGCTTTTGCGGACTCCTGCCGTGCCCTGTGTGAGAGGCACCTAAGG	14	+	86296518-86296567	14q21	PREDICTED: Rattus norvegicus RGD1560273 (predicted) (RGD1560273_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658288-S	ILMN_270237	LOC498122	XM_573333.1	XM_573333.1		498122	62658288	XM_573333.1	LOC498122	XP_573333.1	ILMN_1369194	0001230438	S	1006	TCCAAGTCCCAAGGCAGAGCGAGACAGAGTTCAGGTCCGAAGAATATGGG	11|NW_047364.1	-	210678-210727		PREDICTED: Rattus norvegicus similar to CG15908-PA (LOC498122), mRNA.					
Rattus norvegicus	RefSeq	GI_62122955-S	ILMN_287979	GRAMD1A	NM_001014160.1	NM_001014160.1		361550	62122955	NM_001014160.1	Gramd1a	NP_001014182.1	ILMN_1356460	0004920408	S	2260	TCACAGTGGCCCCGCCAAGAGCCACACAGACCTGGGGACCATAGAACCAA	1	-	86175603-86175652	1q21	Rattus norvegicus GRAM domain containing 1A (Gramd1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124896; RGD1311022; Eg1rvc	MGC124896; RGD1311022; Eg1rvc
Rattus norvegicus	RefSeq	GI_62638944-S	ILMN_266044	RGD1564594_PREDICTED	XM_001055954.1	XM_001055954.1		499085	109501031	XM_001055954.1	RGD1564594_predicted	XP_001055954.1	ILMN_1357813	0003840110	S	2814	TGTTTGATTAGCAGATGAGAGAGCGAGGACACACCACGAGGGCTGCGTTC					PREDICTED: Rattus norvegicus similar to pellino protein (predicted) (RGD1564594_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576588-S	ILMN_288610	OLR866	NM_001000411.1	NM_001000411.1		298475	47576588	NM_001000411.1	Olr866	NP_001000411.1	ILMN_1354140	0002350594	S	665	TTCACATTGCCAAGGCAATTCTCAAGATCAAGTCCACCCAAGGCCGCTGC	5	-	139381080-139381129	5q36	Rattus norvegicus olfactory receptor 866 (Olr866), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr866	Olr866
Rattus norvegicus	RefSeq	GI_62664034-S	ILMN_52487	ABHD3_PREDICTED	XM_214618.4	XM_214618.4		291793	109506295	XM_214618.4	Abhd3_predicted	XP_214618.4	ILMN_1364145	0006100390	S	1711	CTGAAGGTAAAGCTGATCCAACAGCAGATGGGTGAAGAGGTCGGCATGAC	18	-	2027987-2028036	18p13	PREDICTED: Rattus norvegicus abhydrolase domain containing 3 (predicted) (Abhd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639102-S	ILMN_269813	VASP_PREDICTED	XM_001075571.1	XM_001075571.1		361517	109461358	XM_001075571.1	Vasp_predicted	XP_001075571.1	ILMN_1370521	0004150373	S	2144	GCCCTCCAGGAAGACGAAGTGAGGGGGAGGAGAAGAGGAAAAATAGGTCC				1q21	PREDICTED: Rattus norvegicus vasodilator-stimulated phosphoprotein (predicted) (Vasp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662913-S	ILMN_285453	LOC684861	XM_001072229.1	XM_001072229.1		684861	109504398	XM_001072229.1	LOC684861	XP_001072229.1	ILMN_1350973	0003130397	S	955	GACTACATACTGGACTCTGGCCCTGGGGGCTGCCTGATGGCCTATAACCA					PREDICTED: Rattus norvegicus similar to Indoleamine 2,3-dioxygenase (IDO) (Indoleamine-pyrrole 2,3-dioxygenase) (LOC684861), mRNA.			Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660661	ILMN_66062	ZFYVE28_PREDICTED	XM_223537.4	XM_223537.4		305454	109499914	XM_223537.4	Zfyve28_predicted	XP_223537.4	ILMN_1650553	0005570021	S	2897	CGCATTGCTACATGTTCCACGTCACGCCCTTCTACAGTGACAAGACGGGC	14	+	82243929-82243978	14q21	PREDICTED: Rattus norvegicus zinc finger, FYVE domain containing 28 (predicted) (Zfyve28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654160-S	ILMN_66236	FOXL2_PREDICTED	XM_345975.2	XM_345975.2		367152	62654160	XM_345975.2	Foxl2_predicted	XP_345976.2	ILMN_1370930	0006590347	S	3320	TTTCCCCGGATCTTCCGATTCTAGCCCCGGATGCCAGGAGAGATCACTGC				8q31	PREDICTED: Rattus norvegicus forkhead box L2 (predicted) (Foxl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476113-S	ILMN_263408	FOLH1	NM_057185.2	NM_057185.2		85309	42476113	NM_057185.2	Folh1	NP_476533.1	ILMN_1362507	0006130315	S	2717	GGCCAAGGTCTTGTCTGTGGCTCCCTATGGAGGATCCTGATAAAAAGCGG	1	-	142936621-142936670	1q32	Rattus norvegicus folate hydrolase (Folh1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving folic acid and its derivatives [goid 6760] [evidence ISS]; The chemical reactions and pathways involving folic acid and its derivatives [goid 6760] [evidence IEA]; The chemical reactions and pathways involving folic acid and its derivatives [goid 6760] [evidence IEA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Naalad	Naalad
Rattus norvegicus	RefSeq	GI_62648003-S	ILMN_47736	RGD1561357_PREDICTED	XM_579664.2	XM_579664.2		497798	109472455	XM_579664.2	RGD1561357_predicted	XP_579664.1	ILMN_1369621	0002470040	S	69	GTGCCAAGGATAATGTGTACCACCTGGACTGCTTCGCCTGTCAGCTCTGC	4	-	175466036-175466085	4q44	PREDICTED: Rattus norvegicus similar to LIM domain only 3 (predicted) (RGD1561357_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655463-S	ILMN_48212	SNED1	XM_237415.3	XM_237415.3		316638	62655463	XM_237415.3	Sned1	XP_237415.3	ILMN_1362846	0001690025	S	5010	CGCTGCCAGAGCACAAGCCTCAAAAAGCTCAAACAGGTGCACTCTCGGGA				9q36	PREDICTED: Rattus norvegicus sushi, nidogen and EGF-like domains 1 (Sned1), mRNA.		The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643462-S	ILMN_48938	LOC499617	XM_574942.1	XM_574942.1		499617	62643462	XM_574942.1	LOC499617	XP_574942.1	ILMN_1363924	0002470037	S	831	CATCTGCAAGGTCAGACAGGAGGAGCTGGAAGGTGGGAAGCTGACGCCCA				2q26	PREDICTED: Rattus norvegicus similar to regulatory factor X-associated protein (LOC499617), mRNA.					
Rattus norvegicus	RefSeq	GI_56605789-S	ILMN_267369	HCFC2	NM_001008357.1	NM_001008357.1		314704	56605789	NM_001008357.1	Hcfc2	NP_001008358.1	ILMN_1367190	0000580528	S	2119	GGACCCGCCACGCAAGTCCGATGGCTTCAAGGTAACAGTAAAAAAGCCCC	7	-	23216190-23216239	7q13	Rattus norvegicus host cell factor C2 (Hcfc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]			MGC95223	MGC95223
Rattus norvegicus	RefSeq	GI_18266717-S	ILMN_61564	SIAH1A	NM_080905.1	NM_080905.1		140941	18266717	NM_080905.1	Siah1a	NP_543181.1	ILMN_1350112	0001690156	S	709	GGACTGAGCTGAATGGTCATAGGCGGCGATTGACTTGGGAAGCCACCCCT				19p11	Rattus norvegicus seven in absentia 1A (Siah1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process by which a ubiquitin moiety, or multiple moieties, are covalently attached to the target protein, thereby initiating the degradation of that protein [goid 42787] [evidence IDA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576540-S	ILMN_272670	OLR1633	NM_001000835.1	NM_001000835.1		405124	47576540	NM_001000835.1	Olr1633	NP_001000835.1	ILMN_1360409	0006220025	S	309	CTCTTCGCTGGGTACAACTGAATGTCTCTTCCTGGCAGTAATGGCTTATG	15	-	26639079-26639128	15p14	Rattus norvegicus olfactory receptor 1633 (Olr1633), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1633	Olr1633
Rattus norvegicus	RefSeq	GI_62656205-S	ILMN_54112	SLC5A10_PREDICTED	XM_220540.4	XM_220540.4		303205	109488180	XM_220540.4	Slc5a10_predicted	XP_220540.4	ILMN_1363399	0004230520	S	1890	TTCCTTGGTTGGACATGGAGGCCCCAGGAAGCAGAATGTGCCCACAGATA	10	-	47831593-47831642	10q23	PREDICTED: Rattus norvegicus solute carrier family 5 (sodium/glucose cotransporter), member 10 (predicted) (Slc5a10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659686-S	ILMN_264798	RGD1312014_PREDICTED	XM_001076156.1	XM_001076156.1		289199	109498994	XM_001076156.1	RGD1312014_predicted	XP_001076156.1	ILMN_1355698	0005420273	S	1178	CCGGAAGTCGAGCGGGGACGATACCGAGGATGAAACTGGGAATAGGATCA				13q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC37548 (predicted) (RGD1312014_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742841-S	ILMN_266183	PARP1	NM_013063.2	NM_013063.2		25591	55742841	NM_013063.2	Parp1	NP_037195.1	ILMN_1360864	0006200136	S	3367	GTCCTGAGGGAAGAAACCGCCACGTCACAGTCACAATGTCTGCCTTACTG	13	+	96341317-96341366	13q26	Rattus norvegicus poly (ADP-ribose) polymerase family, member 1 (Parp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence NAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence IEA]; Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]; The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides [goid 6259] [evidence ISS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IEA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence ISS]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IDA]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IDA]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence IDA]; Any process that modulates the rate of growth of all or part of an organism [goid 40009] [evidence IEA]; Any process that modulates the rate of growth of all or part of an organism [goid 40009] [evidence ISS]; The series of events required to receive a stimulus indicating DNA damage has occurred and convert it to a molecular signal [goid 42769] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IEA]; Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IDA]; Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor) [goid 16763] [evidence NAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]	Parp-1; Adprt; MGC93658	Parp-1; Adprt; MGC93658
Rattus norvegicus	RefSeq	GI_62657661-S	ILMN_61452	CBR3_PREDICTED	XM_221641.4	XM_221641.4		304078	109492940	XM_221641.4	Cbr3_predicted	XP_221641.4	ILMN_1362942	0001400112	S	1096	ATTTTGCTGAATGCCTGCTGCCCGGGATGGGTGAAGACCGACATGGCGAG	11	+	33921818-33921867	11q11	PREDICTED: Rattus norvegicus carbonyl reductase 3 (predicted) (Cbr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664473-S	ILMN_59662	LOC497724	XM_579510.1	XM_579510.1		497724	62664473	XM_579510.1	LOC497724	XP_579510.1	ILMN_1360414	0003140161	S	5158	CCTGCCTGGAGCAGCAGAGGCTGGGGAATACTGCTCACAACGGTACCAAA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031525 (LOC497724), mRNA.					
Rattus norvegicus	RefSeq	GI_62642342-S	ILMN_59607	ANKRD2_PREDICTED	XM_219881.4	XM_219881.4		309374	109460153	XM_219881.4	Ankrd2_predicted	XP_219881.4	ILMN_1375034	0002940095	S	71	TTTCTTCTGCGGAACTGTGCACCTCACCAGAGGGGTCTCTGCAGGCGCGT	1	-	248817259-248817308	1q54	PREDICTED: Rattus norvegicus ankyrin repeat domain 2 (stretch responsive muscle) (predicted) (Ankrd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18266697-S	ILMN_279486	FAIM	NM_080895.1	NM_080895.1		140930	18266697	NM_080895.1	Faim	NP_543171.1	ILMN_2040544	0004050192	S	467	GAGACAGCGGGCGAGTTTGTAGATGACGGGACTGAAACACACTTCAGCGT	2	+	9536645-9536651:9539067-9539109	2q11	Rattus norvegicus Fas apoptotic inhibitory molecule (Faim), mRNA.		A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_16258818-S	ILMN_262370	CHRNA3	XM_001072823.1	XM_001072823.1		25101	109484728	XM_001072823.1	Chrna3	XP_001072823.1	ILMN_1374203	0005220079	S	1389	CACATAGACTGTGCACTGTTCATCGAGGCTCACCTGTGCTGACGCAAGGG				8q24	PREDICTED: Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 3 (Chrna3), mRNA.	A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence TAS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity [goid 7171] [evidence IEA]; Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity [goid 7171] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; Any process that modulates the frequency, rate or extent of the regulated release of acetylcholine [goid 14056] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of acetylcholine [goid 14056] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence IEA]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence IEA]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence ISS]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence ISS]	 [goid 4889] [evidence IEA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IMP];  [goid 4889] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IDA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence IDA]		
Rattus norvegicus	RefSeq	Rn.8972	ILMN_52113	ANKRD52_PREDICTED	XM_343139.3	XM_343139.3		362811	109480127	XM_343139.3	Ankrd52_predicted	XP_343140.3	ILMN_1530442	0001990129	S	4247	TTCTTTTAGGGTAAGAAACAAACGAATATCCTGCCCATTTCAAAACTACA	7	+	1683367-1683416	7q11	PREDICTED: Rattus norvegicus ankyrin repeat domain 52 (predicted) (Ankrd52_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651643-S	ILMN_52113	ANKRD52_PREDICTED	XM_343139.3	XM_343139.3		362811	109480127	XM_343139.3	Ankrd52_predicted	XP_343140.3	ILMN_1363588	0004150441	S	6456	GAGGGGGCTTCTCCTTTTGTTTGGTGCTGTGGGGGGTGGGAGACTTGAGA	7	+	1685576-1685625	7q11	PREDICTED: Rattus norvegicus ankyrin repeat domain 52 (predicted) (Ankrd52_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50541942-S	ILMN_266392	OLR1384	NM_001002291.1	NM_001002291.1		405398	50541942	NM_001002291.1	Olr1384	NP_001002291.1	ILMN_1367528	0006510014	S	303	CCTCTTTGTCTCTCTTGTAGGGTCTGAGGGGCTCTTGCTGGGACTCATGG	10	-	34252562-34252611	10q21	Rattus norvegicus olfactory receptor gene Olr1384 (Olr1384), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577192-S	ILMN_278005	OLR742	NM_001000576.1	NM_001000576.1		366121	47577192	NM_001000576.1	Olr742	NP_001000576.1	ILMN_1363328	0005340471	S	714	TGCCTCTCACATCACGGTGGTCTTCTTGTACTTTGGGCCTGGTGCGTTTA	3	-	74692018-74692067	3q24	Rattus norvegicus olfactory receptor 742 (Olr742), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr742	Olr742
Rattus norvegicus	Unigene	Rn.7760	ILMN_161541	RN.7760	Rn.7760		Rn.7760		50377540	CO564944			ILMN_1530335	0003190647	S	204	AATTTTGGATGAATTTCGTTTGTCCTATTTTTAACATTCCACCATTTGCT					AGENCOURT_28538984 NIH_MGC_249 Rattus norvegicus cDNA clone IMAGE:7376789 5', mRNA					
Rattus norvegicus	RefSeq	GI_6978528-S	ILMN_51936	AQP2	NM_012909.2	NM_012909.2		25386	77539433	NM_012909.2	Aqp2	NP_037041.2	ILMN_1370221	0005130673	S	655	CCAGCAGTTGTCACTGGCAAGTTTGATGATCACTGGGTCTTCTGGATCGG	7	+	138329441-138329476:138330185-138330198	7q36	Rattus norvegicus aquaporin 2 (collecting duct) (Aqp2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Organelle consisting of networks of 60nm tubules organized around the microtubule organizing centre in some cell types. They transport receptors from late endosomes back to the plasma membrane for recycling and are also involved in membrane trafficking [goid 55037] [evidence ISS]	The directed movement of water (H2O) by the kidney [goid 3097] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence TAS]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IEP]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment [goid 9651] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of water within an organism or cell [goid 30104] [evidence TAS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of water [goid 42631] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence TAS]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence ISS]	aquaporin-2; AQP-2; MGC156502	aquaporin-2; AQP-2; MGC156502
Rattus norvegicus	RefSeq	GI_62659364-S	ILMN_276731	NAV1_PREDICTED	XM_001063421.1	XM_001063421.1		304818	109498679	XM_001063421.1	Nav1_predicted	XP_001063421.1	ILMN_1353580	0002680397	S	5668	CAGTCAAAGACAGCACCCCAAACTCCCTCGATTCAGACCCCCTGATGGCC					PREDICTED: Rattus norvegicus neuron navigator 1 (predicted) (Nav1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666822-S	ILMN_280812	RGD1566197_PREDICTED	XR_008812.1	XR_008812.1		302688	109511759	XR_008812.1	RGD1566197_predicted		ILMN_1358529	0001090193	S	409	CAGGTGCTGTCCTCTATCACCACAGAGAGCCTCAAGTTGATGGTGGCTCG				Xq21	PREDICTED: Rattus norvegicus similar to prohibitin (predicted) (RGD1566197_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19263335-I	ILMN_287114	SHANK2	NM_133440.1	NM_133440.1		171093	19263335	NM_133440.1	Shank2	NP_597684.1	ILMN_1375908	0001400746	I	45	TGCATCCCCAGTGCCTGCTGCTGGCTCGTGCACAGAACAAACGGAGAGAA	1	+	204722878-204722927	1q41	Rattus norvegicus SH3/ankyrin domain gene 2 (Shank2), transcript variant 3, mRNA.	The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16293618] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Spank-3; ProSAP1; CortBP1	Spank-3; ProSAP1; CortBP1
Rattus norvegicus	RefSeq	GI_62650912-S	ILMN_263802	PIGH_PREDICTED	XM_001078440.1	XM_001078440.1		362756	109479398	XM_001078440.1	Pigh_predicted	XP_001078440.1	ILMN_1351227	0006940139	S	496	GAGATATCCCAAGTAGTGCCTGTCTTCCAGAGCGCCAAGCCCCGGTTGGA				6q24	PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class H (predicted) (Pigh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664007-S	ILMN_286509	LOC683598	XM_001066690.1	XM_001066690.1		683598	109477459	XM_001066690.1	LOC683598	XP_001066690.1	ILMN_1375058	0006520270	S	720	GAGCTCAAGCAACAGCCTGGGTACAACCCAATCATCTGACCATTCCACAG					PREDICTED: Rattus norvegicus similar to Uromodulin precursor (Tamm-Horsfall urinary glycoprotein) (THP) (LOC683598), mRNA.					
Rattus norvegicus	RefSeq	GI_57527469-S	ILMN_293158	LYSMD3	NM_001009698.1	NM_001009698.1		315923	57527469	NM_001009698.1	Lysmd3	NP_001009698.1	ILMN_1369337	0001770400	S	1072	AGGCACGCGACTGATGCTCCACACAAAATGTAACGGTGAGGGGTTGGGGA	2	+	9758009-9758022:9758023-9758058	2q11	Rattus norvegicus LysM, putative peptidoglycan-binding, domain containing 3 (Lysmd3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a cell wall [goid 16998] [evidence IEA]		MGC109090; RGD1308805	MGC109090; RGD1308805
Rattus norvegicus	RefSeq	GI_62647930-A	ILMN_295680	GRM7	NM_031040.1	NM_031040.1		81672	13591962	NM_031040.1	Grm7	NP_112302.1	ILMN_1376436	0003940292	S	3254	CTCCACCCGGGAGAGCAATGTTAGAGGATCCACACATCCTGAACAGCTGC				4q42	Rattus norvegicus glutamate receptor, metabotropic 7 (Grm7), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density [goid 32279] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix [goid 48786] [evidence IDA]	A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus [goid 1661] [evidence ISS]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a metabotropic glutamate receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7196] [evidence IDA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence TAS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information received a short time (up to about 30 minutes) ago. This type of memory is typically dependent on direct, transient effects of second messenger activation [goid 7614] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IDA]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; A change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 33555] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	A G-protein coupled receptor that binds glutamate and inhibits adenylate cyclase activity [goid 1640] [evidence IDA]; A G-protein coupled receptor that is activated by L-AP-4 and inhibits adenylate cyclase activity [goid 1642] [evidence TAS]; A G-protein coupled receptor that is activated by L-AP-4 and inhibits adenylate cyclase activity [goid 1642] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS];  [goid 5246] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IPI]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.19937	ILMN_160517	RN.19937	Rn.19937		Rn.19937		4255763	AI412259			ILMN_1530298	0003780184	S	176	ATACATGTGTGTAAATAGTGTAATGTGATGTACATGTGTGCAATTATAGT					EST240554 Normalized rat brain, Bento Soares Rattus sp. cDNA clone RBRDI07 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_62652768-S	ILMN_63041	LOC503161	XM_578685.1	XM_578685.1		503161	62652768	XM_578685.1	LOC503161	XP_578685.1	ILMN_1373737	0001400446	S	929	GGCCTACCAGAAAGGGCACTGGGCCAGAGAATGTTCAGGACCTCCAAGAG					PREDICTED: Rattus norvegicus similar to membrane and microfilament-associated protein p58 (LOC503161), mRNA.					
Rattus norvegicus	RefSeq	GI_62651068-S	ILMN_68460	RPS6KL1_PREDICTED	XM_234419.4	XM_234419.4		299202	109478517	XM_234419.4	Rps6kl1_predicted	XP_234419.4	ILMN_1350335	0006130551	S	1491	GGTTGGGGGCATTTCTGAGCTGACCGAAGCCTGTGACTGGTGGAGCTACG	6	-	109184870-109184919	6q31	PREDICTED: Rattus norvegicus ribosomal protein S6 kinase-like 1 (predicted) (Rps6kl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758795-S	ILMN_289410	INPP4B	NM_053917.1	NM_053917.1		116699	16758795	NM_053917.1	Inpp4b	NP_446369.1	ILMN_1350625	0002510577	S	3880	GCGCCATTTTTAGCACCTGTGACTTTTGTACTGTGGTAGAGGGGACAGGC	19	-	27722699-27722748	19q11	Rattus norvegicus inositol polyphosphate-4-phosphatase, type II (Inpp4b), mRNA.			Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate [goid 16316] [evidence IDA]; Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate [goid 16316] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate [goid 34597] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650869-S	ILMN_271875	TIMM9	XM_001080501.1	XM_001080501.1		171139	109479486	XM_001080501.1	Timm9	XP_001080501.1	ILMN_2039665	0004810424	S	349	TCAGGAATATCACATTCAGCAGAATGAAGCCCTGGCAGCCAAAGCAGGCC				6q24	PREDICTED: Rattus norvegicus translocase of inner mitochondrial membrane 9 homolog (yeast) (Timm9), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IEA]	The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the mitochondria inner membrane. Inner membrane proteins are first imported into the matrix space where the matrix-targeting sequence is removed; how these proteins then are incorporated into the inner membrane is not known [goid 45039] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577326-S	ILMN_278819	OLR418	NM_001000825.1	NM_001000825.1		405114	47577326	NM_001000825.1	Olr418	NP_001000825.1	ILMN_1351257	0000630026	S	605	CAGAAGGAGCTCTTGTTTTGGTCACCCCCTTCCTATGCATTGCCTTTTCC	3	-	16438158-16438207	3q11	Rattus norvegicus olfactory receptor 418 (Olr418), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr418	Olr418
Rattus norvegicus	RefSeq	GI_62654292-S	ILMN_49941	LOC367155	XM_578751.1	XM_578751.1		367155	62654292	XM_578751.1	LOC367155	XP_578751.1	ILMN_1359311	0006110156	S	431	GGCCTATAGAAGCATGGCCAGCAACTGGGATGTGGCATTTCATGTCCAGG				8q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (LOC367155), mRNA.					
Rattus norvegicus	RefSeq	GI_6978893-S	ILMN_263702	GIPR	NM_012714.1	NM_012714.1		25024	6978893	NM_012714.1	Gipr	NP_036846.1	ILMN_1369898	0002650452	S	2428	TCTCCTAGCTGACCCCGCACTCAACACTTCAGGGCTTTGCCTTCTGGAGT	1	-	78515274-78515323	1q21	Rattus norvegicus gastric inhibitory polypeptide receptor (Gipr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with gastric inhibitory peptide to initiate a change in cell activity [goid 16519] [evidence IEP]; Combining with gastric inhibitory peptide to initiate a change in cell activity [goid 16519] [evidence IEA]	RATGIPPR; Gippr	RATGIPPR; Gippr
Rattus norvegicus	RefSeq	GI_54400737-S	ILMN_284937	CHPF	NM_001005906.1	NM_001005906.1		316533	54400737	NM_001005906.1	Chpf	NP_001005906.1	ILMN_1360726	0006130673	S	2740	GGCCTCTTGTGTTTATGCCTAACGCCAGCCATGCTTCCGGGGCTCTTGTC	9	-	74750072-74750121	9q33	Rattus norvegicus chondroitin polymerizing factor (Chpf), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94386	MGC94386
Rattus norvegicus	RefSeq	GI_6978486-S	ILMN_298300	ALDOA	NM_012495.1	NM_012495.1		24189	6978486	NM_012495.1	Aldoa	NP_036627.1	ILMN_1366201	0001050687	S	1156	GAGCCCTGGCCAACAGCCTCGCTTGTCAAGGAAAGTACACTCCAAGTGGC	1	-	185970894-185970936:185971020-185971026	1q36	Rattus norvegicus aldolase A, fructose-bisphosphate (Aldoa), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence ISS]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	Aldo1; RNALDOG5	Aldo1; RNALDOG5
Rattus norvegicus	RefSeq	GI_34878796-S	ILMN_298300	ALDOA	NM_012495.1	NM_012495.1		24189	6978486	NM_012495.1	Aldoa	NP_036627.1	ILMN_1367380	0001050487	S	826	ATGTCTATCTGGAAGGCACACTGCTGAAGCCCAACATGGTCACCCCTGGC	1	-	185971446-185971495	1q36	Rattus norvegicus aldolase A, fructose-bisphosphate (Aldoa), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence ISS]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	Aldo1; RNALDOG5	Aldo1; RNALDOG5
Rattus norvegicus	RefSeq	GI_47576348-S	ILMN_290558	OLR1538	NM_001000530.1	NM_001000530.1		363761	47576348	NM_001000530.1	Olr1538	NP_001000530.1	ILMN_1373857	0000940195	S	186	CCTCAGCAGCTTGGCTTTTGCTGACTCATGCACTACATCCTCTGTGACTC	11	+	41968447-41968496	11q12	Rattus norvegicus olfactory receptor 1538 (Olr1538), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1538	Olr1538
Rattus norvegicus	RefSeq	GI_47577006-S	ILMN_279137	OLR783	NM_001000376.1	NM_001000376.1		296037	47577006	NM_001000376.1	Olr783	NP_001000376.1	ILMN_1371526	0003140563	S	317	CAGTAGGTGGCACTGAGATGGTGCTGCTCATAGCCATGGCATTTGACCGT	3	-	97584511-97584560	3q34	Rattus norvegicus olfactory receptor 783 (Olr783), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr783	Olr783
Rattus norvegicus	RefSeq	GI_47576292-S	ILMN_300519	OLR1283	NM_001000518.1	NM_001000518.1		315572	47576292	NM_001000518.1	Olr1283	NP_001000518.1	ILMN_1370885	0000130541	S	662	ACATCTTCATCATAGCCAGCATCCTCCGCATTCGCACCACTGAGGGCAGA	8	-	41405571-41405620	8q22	Rattus norvegicus olfactory receptor 1283 (Olr1283), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr21	tpcr21
Rattus norvegicus	RefSeq	GI_62650649	ILMN_70207	LOC500649	XM_576026.1	XM_576026.1		500649	62650649	XM_576026.1	LOC500649	XP_576026.1	ILMN_1651049	0006860687	S	691	AGATTACGACTTGCTGAAGGCGCAGCCACGCCCTATTGTGCACGCCTAGG					PREDICTED: Rattus norvegicus similar to DnaJ homolog subfamily B member 6 (Heat shock protein J2) (HSJ-2) (MRJ) (mDj4) (LOC500649), mRNA.					
Rattus norvegicus	RefSeq	GI_62646878-S	ILMN_62851	RGD1559697_PREDICTED	XM_575393.2	XM_575393.2		500037	109471748	XM_575393.2	RGD1559697_predicted	XP_575393.2	ILMN_1356304	0005550685	S	1812	CAATGGTTCCCTGGACCACATCGACAGCAATGGGAACAGCAGTCCGGGCT	4	+	40952629-40952678	4q21	PREDICTED: Rattus norvegicus similar to forkhead/winged-helix transcription factor 2 (predicted) (RGD1559697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18543176-S	ILMN_264942	CS	NM_130755.1	NM_130755.1		170587	18543176	NM_130755.1	Cs	NP_570111.1	ILMN_1363211	0001850368	S	922	ACACTTACCTGTCCTTTGCAGCAGCTATGAATGGGCTGGCAGGGCCTCTG	7	+	1650260-1650309	7q11	Rattus norvegicus citrate synthase (Cs), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA [goid 4108] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651384-S	ILMN_60988	LOC366763	XM_345750.2	XM_345750.2		366763	62651384	XM_345750.2	LOC366763	XP_345751.2	ILMN_1367678	0003060504	S	1916	GAGGAAGACACTGCCACTTATTACTGTGTGCACTGTGAGATGCAGCTTGT				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region IR2 precursor (LOC366763), mRNA.					
Rattus norvegicus	RefSeq	GI_47578018-S	ILMN_275222	OLR1070	NM_001000591.1	NM_001000591.1		366816	47578018	NM_001000591.1	Olr1070	NP_001000591.1	ILMN_1357134	0003450735	S	839	CCCTAGTCACACCTATGCTGAACCCTCTGATTTACTCTCTGAGAAATAAG	7	-	8316872-8316921	7q11	Rattus norvegicus olfactory receptor 1070 (Olr1070), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1070	Olr1070
Rattus norvegicus	RefSeq	GI_62654393-S	ILMN_54727	DCAMKL3_PREDICTED	XM_236661.4	XM_236661.4		316023	109484012	XM_236661.4	Dcamkl3_predicted	XP_236661.3	ILMN_1353257	0006100438	S	2423	AATTTGCTGGTAGTGGACCCCAAGAAGCGGTACACGGCCCACCAGGTCCT	8	+	115882562-115882611	8q32	PREDICTED: Rattus norvegicus doublecortin and CaM kinase-like 3 (predicted) (Dcamkl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654356-S	ILMN_53068	SCAP_PREDICTED	XM_217279.4	XM_217279.4		301024	109483987	XM_217279.4	Scap_predicted	XP_217279.3	ILMN_1360796	0002370044	S	4129	CCAAGGTGGGGCACTGGGGATTGCAACTCTTTGGACCTAGACTGGAGGCA	8	+	114761217-114761266	8q32	PREDICTED: Rattus norvegicus SREBP cleavage activating protein (predicted) (Scap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642197-S	ILMN_53282	MPHOSPH1_PREDICTED	XM_220055.4	XM_220055.4		309523	109460066	XM_220055.4	Mphosph1_predicted	XP_220055.4	ILMN_1371803	0002370301	S	4808	ACACCTCTGCAGCCAAACAAAGTGGCAGTGAAGCACCCTGGTTGTGCCAC	1	+	238940890-238940939	1q52	PREDICTED: Rattus norvegicus M-phase phosphoprotein 1 (predicted) (Mphosph1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645668-S	ILMN_285047	RGD1311552_PREDICTED	XM_001076748.1	XM_001076748.1		311355	109470512	XM_001076748.1	RGD1311552_predicted	XP_001076748.1	ILMN_1367547	0006590400	S	5413	TGCCAGGGACAGAGTGGCCAAAGATCAAACACTCCAGGGTCCCCAAGAGG				3q35	PREDICTED: Rattus norvegicus similar to KIAA0377-like protein (predicted), transcript variant 4 (RGD1311552_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718087-S	ILMN_64884	LOC501288	XM_580184.1	XM_580184.1		501288	62718087	XM_580184.1	LOC501288	XP_580184.1	ILMN_1369096	0006450528	S	9	GACATGATTGGAAAGAACCAAAACGGTGCAGAGGCTTCTGGGCATCGGCC					PREDICTED: Rattus norvegicus LOC501288 (LOC501288), mRNA.					
Rattus norvegicus	RefSeq	GI_62646403-S	ILMN_280230	LOC686344	XM_001073663.1	XM_001073663.1		686344	109471371	XM_001073663.1	LOC686344	XP_001073663.1	ILMN_1368788	0004120022	S	1403	CTCCGCCATAGCTGTGTGGTGGCCCTTAGAATAGATGGGGAGGCTTCAGG					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 Kua-UEV isoform 1 (LOC686344), mRNA.					
Rattus norvegicus	RefSeq	GI_56090284-A	ILMN_266706	QARS	NM_001007624.1	NM_001007624.1		290868	56090284	NM_001007624.1	Qars	NP_001007625.1	ILMN_1376804	0000360064	S	1554	CGCTTCGAATGAAGTTGGTGATGGAAGATGGAAAGATGGACCCTGTGGCC	16|NW_047483.1	+	302508-302557		Rattus norvegicus glutaminyl-tRNA synthetase (Qars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA [goid 6424] [evidence IEA]; The process of coupling glutamine to glutaminyl-tRNA, catalyzed by glutaminyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA [goid 6425] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln) [goid 4819] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC94241	MGC94241
Rattus norvegicus	RefSeq	GI_62644880-S	ILMN_53737	LOC366008	XM_345329.2	XM_345329.2		366008	62644880	XM_345329.2	LOC366008	XP_345330.2	ILMN_1355780	0005700056	S	504	TTGGGGAGGATGCTGTATCAGGCCCCTATGATGGTGTCCGAGGCCCCCTA				3p13	PREDICTED: Rattus norvegicus similar to lipocalin precursor; epididymal 17 kDa protein precursor (predicted) (LOC366008), mRNA.					
Rattus norvegicus	RefSeq	GI_61097895-S	ILMN_275367	EYA2	NM_130427.1	NM_130427.1		156826	61097895	NM_130427.1	Eya2	NP_569111.1	ILMN_1360125	0002260239	S	1379	TCCCCATCGAGAACATCTACAGCGCGACCAAGACAGGCAAGGAGAGCTGC	3	+	156844358-156844393:156846293-156846306	3q42	Rattus norvegicus eyes absent homolog 2 (Drosophila) (Eya2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577866-S	ILMN_295480	OLR1225	NM_001001083.1	NM_001001083.1		405974	47577866	NM_001001083.1	Olr1225	NP_001001083.1	ILMN_1367335	0003140278	S	556	CTCCTTCGGCTCTCTTGCAGTAGCACCTATGTCAATGAGCTTGTGAGCTC	8	+	40417741-40417790	8q22	Rattus norvegicus olfactory receptor 1225 (Olr1225), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1225	Olr1225
Rattus norvegicus	RefSeq	GI_62644374	ILMN_283603	ENPEP	NM_022251.1	NM_022251.1		64017	11560058	NM_022251.1	Enpep	NP_071587.1	ILMN_1650764	0002810592	S	953	TATCGGCTGACCATAGAGTTTGAAGGCTGGTTGAACGGCTCCCTTGTGGG				2q42	Rattus norvegicus glutamyl aminopeptidase (Enpep), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IDA]; The volume enclosed by the membrane or protein that forms a vesicle [goid 31983] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644686-S	ILMN_66764	LOC499743	XM_575078.1	XM_575078.1		499743	62644686	XM_575078.1	LOC499743	XP_575078.1	ILMN_1364651	0003850347	S	1009	GAAACCCTGGACCACCTACCACAGCCCAGCAAGGATATTGAGAGTCAGAG				3p13	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC499743), mRNA.					
Rattus norvegicus	RefSeq	GI_9910213-S	ILMN_296467	EIF5	NM_020075.1	NM_020075.1		56783	9910213	NM_020075.1	Eif5	NP_064460.1	ILMN_1352342	0006980184	S	3040	TGGGAGGCTGGGCGTGGAACAGGAGCCATATACCTGGAATGGTAACAGGG	6	+	136318121-136318170	6q32	Rattus norvegicus eukaryotic translation initiation factor 5 (Eif5), mRNA.		The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IDA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648033-S	ILMN_292906	CIDEC	NM_001024333.1	NM_001024333.1		500292	66730261	NM_001024333.1	Cidec	NP_001019504.1	ILMN_1365952	0006980438	S	1338	GAGTTAAGTGATGCAGATTTGGGGGGTCCTGACCTGTGCCAGCCAGGGAG	4	-	149308230-149308279	4q42	Rattus norvegicus cell death-inducing DFFA-like effector c (Cidec), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652529-S	ILMN_50713	LOC299919	XM_235288.3	XM_235288.3		299919	62652529	XM_235288.3	LOC299919	XP_235288.3	ILMN_1374198	0005290685	S	2166	TCTCGGGAAACAACTGGAAAAGGTGTGGGGCAGAGCCTGTGTGAGAAGCT					PREDICTED: Rattus norvegicus similar to Otoconin 90 precursor (Oc90) (Otoconin-95) (Oc95) (LOC299919), mRNA.					
Rattus norvegicus	RefSeq	GI_29293828-S	ILMN_269025	GPBAR1	NM_177936.1	NM_177936.1		338443	29293828	NM_177936.1	Gpbar1	NP_808797.1	ILMN_1362439	0000380070	S	876	AGCTGCCCAAAGGTGGCTACAAGTGCTTCGAGGAAGACCCAAGAGGGCCA	9	+	73606016-73606065	9q33	Rattus norvegicus G protein-coupled bile acid receptor 1 (Gpbar1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]	Tgr5	Tgr5
Rattus norvegicus	RefSeq	GI_62642818-S	ILMN_62569	MRPS27_PREDICTED	XM_342180.3	XM_342180.3		361883	109464278	XM_342180.3	Mrps27_predicted	XP_342181.2	ILMN_1359409	0007040358	S	1630	CCATGTCCTGATGTTGGTAAACCGAGAGCCACCCAATTCCAGAACCAGGC	2	+	30406520-30406569	2q12	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S27 (predicted) (Mrps27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21743783-A	ILMN_280118	FILIP1	NM_145682.1	NM_145682.1		246776	21743783	NM_145682.1	Filip1	NP_663715.1	ILMN_1376850	0005550270	S	3977	CCCCATTCAAGGTAGCTCACGAGTTGTGAAGCCCTCAATATCGTCACCGG				8q31	Rattus norvegicus filamin A interacting protein 1 (Filip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]			Filip	Filip
Rattus norvegicus	RefSeq	GI_16758757-S	ILMN_277792	LMAN1	NM_053886.1	NM_053886.1		116666	16758757	NM_053886.1	Lman1	NP_446338.1	ILMN_1361804	0000380292	S	1428	GCCCAGATCTACCAGCATTCCCGTCGTGTCTGTCCACAGTCCACTTTGTG	18	+	62522464-62522513	18q12.1	Rattus norvegicus lectin, mannose-binding, 1 (Lman1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence TAS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence TAS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]	p58	p58
Rattus norvegicus	RefSeq	GI_62663032-S	ILMN_67971	LOC498671	XM_573954.1	XM_573954.1		498671	62663032	XM_573954.1	LOC498671	XP_573954.1	ILMN_1374486	0000380403	S	8940	ACATGTGCTGCTGACAGTAGTGTGCCGCTGTTTGTAATCGACCCACGGGA					PREDICTED: Rattus norvegicus similar to CG6004-PB (LOC498671), mRNA.					
Rattus norvegicus	RefSeq	GI_6981233-S	ILMN_302443	MYH3	NM_012604.1	NM_012604.1		24583	6981233	NM_012604.1	Myh3	NP_036736.1	ILMN_1360458	0003120184	S	5780	TCCGGAAAGCCCAGCATGAGCTAGAGGAGGCCGAGGAACGTGCGGATATT	10	+	53799987-53800036	10q24	Rattus norvegicus myosin, heavy chain 3, skeletal muscle, embryonic (Myh3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]	A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Myhse; RNMHCG	Myhse; RNMHCG
Rattus norvegicus	RefSeq	GI_62657971-S	ILMN_276888	MYLK_PREDICTED	XM_001071705.1	XM_001071705.1		288057	109494482	XM_001071705.1	Mylk_predicted	XP_001071705.1	ILMN_1359071	0002900132	S	5874	GTCCCGCCACTTCCAGATAGACTACGATGAAGACGGGAACTGCTCGCTAA				11q22	PREDICTED: Rattus norvegicus myosin, light polypeptide kinase (predicted) (Mylk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650330-S	ILMN_54188	LOC316717	XM_237497.3	XM_237497.3		316717	62650330	XM_237497.3	LOC316717	XP_237497.3	ILMN_1372401	0005290632	S	1534	CGGGCCAACAGGAGGGAAAGTGGGCTGTCAATAGCCCTCAAGTTACGTAG				6q12	PREDICTED: Rattus norvegicus protein serine-threonine phosphatase catalytic subunit PP-1c (LOC316717), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667441-S	ILMN_270273	RGD1560456_PREDICTED	XM_228664.3	XM_228664.3		317310	62667441	XM_228664.3	RGD1560456_predicted	XP_228664.3	ILMN_1357586	0003290524	S	588	TCCTTCTGGATATGTGCCGCAGGCAGGTGACGTTGTCAATGTGGTTGCAG	X	-	141029774-141029823	Xq36	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 48 (predicted) (RGD1560456_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655548-S	ILMN_54552	LOC503273	XM_578808.1	XM_578808.1		503273	62655548	XM_578808.1	LOC503273	XP_578808.1	ILMN_1357846	0000510671	S	3276	TCTCTTTGTATGCTAATCTGCCGCTGTACTCTGTGGGCGTGGCCCTCGGG					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (LOC503273), mRNA.					
Rattus norvegicus	RefSeq	GI_62650347-S	ILMN_268625	RASGRP3_PREDICTED	XM_001065154.1	XM_001065154.1		313874	109478978	XM_001065154.1	Rasgrp3_predicted	XP_001065154.1	ILMN_1366895	0004920685	S	2055	GCCCACGCTACACGCTGGTGTGGATGTTGTAGATCGAGGCACTGCATTCG				6q12	PREDICTED: Rattus norvegicus RAS, guanyl releasing protein 3 (predicted) (Rasgrp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641115-S	ILMN_70184	RGD1306959_PREDICTED	XM_341902.3	XM_341902.3		361624	109459217	XM_341902.3	RGD1306959_predicted	XP_341903.1	ILMN_1355827	0005360092	S	925	CGCATGTGGTTGCAGTTGACTCGGGGCAAAGTGTGGACTTGGTGTTCCCC	1	+	167332804-167332853	1q33	PREDICTED: Rattus norvegicus similar to C11orf17 protein (predicted) (RGD1306959_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643096-S	ILMN_264707	CDH18_PREDICTED	XM_001058479.1	XM_001058479.1		310174	109466201	XM_001058479.1	Cdh18_predicted	XP_001058479.1	ILMN_1352956	0001690162	S	2787	GCAACCACGCAATCAGACCAGGATTATCACTACCTTGGAGACTGGGGGCC				2q22	PREDICTED: Rattus norvegicus cadherin 18, type 2 (predicted) (Cdh18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655137	ILMN_68055	LOC301455	XM_237215.4	XM_237215.4		301455	109486116	XM_237215.4	LOC301455	XP_237215.4	ILMN_1651047	0002030066	S	3559	GAGAGCTTCCATACTACCCAGGGCCTCATCCTGTGCATTCCCCAAGAGGG	9	+	61275652-61275701	9q31	PREDICTED: Rattus norvegicus similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b (LOC301455), mRNA.					
Rattus norvegicus	RefSeq	GI_34862338-S	ILMN_270815	ELA2_PREDICTED	XM_001077083.1	XM_001077083.1		299606	109481619	XM_001077083.1	Ela2_predicted	XP_001077083.1	ILMN_1359648	0004570332	S	639	AGGCATTGACTCCTTCATCCGAGGAGGCTGTGGATCTGGATTCTACCCAG				7q11	PREDICTED: Rattus norvegicus elastase 2, neutrophil (predicted) (Ela2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644796-S	ILMN_49338	RGD1564893_PREDICTED	XM_575099.2	XM_575099.2		499762	109467937	XM_575099.2	RGD1564893_predicted	XP_575099.1	ILMN_1368598	0006620035	S	643	CCCATCTGTGAATGAAGCCATTGACCAGCGTAACCAGCAGCTTCGAGCCC	3	-	5805449-5805498	3p12	PREDICTED: Rattus norvegicus similar to surfeit 5 isoform b (predicted) (RGD1564893_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465576-S	ILMN_270290	CYP4F5	NM_173124.1	NM_173124.1		286905	27465576	NM_173124.1	Cyp4f5	NP_775147.1	ILMN_1349889	0002190390	S	2007	CCCGAGTGGCAATTAGAAAGTGCACCACTGTGCCTGTCGTATTCGAAGGT	7	+	13133621-13133670	7q11	Rattus norvegicus cytochrome P450 4F5 (Cyp4f5), mRNA.		The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659658-S	ILMN_61635	LOC501860	XM_580233.1	XM_580233.1		501860	62659658	XM_580233.1	LOC501860	XP_580233.1	ILMN_1362212	0002360687	S	20	ATGTGACCCCTGCGTGAAAAACATCGGGGACCTGGGATGGAAGATCGGCC					PREDICTED: Rattus norvegicus LOC501860 (LOC501860), mRNA.					
Rattus norvegicus	RefSeq	GI_62644642-S	ILMN_64260	LOC362072	XM_342374.2	XM_342374.2		362072	62644642	XM_342374.2	LOC362072	XP_342375.2	ILMN_1361544	0002320400	S	1432	TGCAGGAAACAGACTTCGTCTACCGGCGTCCCCTGAAAGACAGGGCAAAT					PREDICTED: Rattus norvegicus similar to putative chloride channel protein CLC6 (LOC362072), mRNA.					
Rattus norvegicus	RefSeq	GI_62649660-S	ILMN_63644	RGD1561833_PREDICTED	XM_342921.3	XM_342921.3		362602	109475499	XM_342921.3	RGD1561833_predicted	XP_342922.3	ILMN_1372296	0001780138	S	3925	CAGAGAGACCTGCGGACTTACAGTCCCTCCCTAAGATTGGCAGTCACGTC	5	+	146566456-146566505	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330177P20 (predicted) (RGD1561833_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664171-S	ILMN_68327	LOC362148	XM_342447.2	XM_342447.2		362148	62664171	XM_342447.2	LOC362148	XP_342448.2	ILMN_1361670	0000130731	S	51	TCAGGATCAGGAGGCACACAAGTCCATCCAAACCGCCCTCGCCCAGTCAC					PREDICTED: Rattus norvegicus similar to Rpl7a protein (LOC362148), mRNA.					
Rattus norvegicus	RefSeq	GI_62645072-S	ILMN_63197	LOC362803	XM_343130.2	XM_343130.2		362803	62645072	XM_343130.2	LOC362803	XP_343131.2	ILMN_1373727	0006940563	S	163	CACACACATCTCGGACGCCAGAGGTCCATCTGGAACCCTGGTGCACTGAA					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC362803), mRNA.					
Rattus norvegicus	RefSeq	GI_62652491-S	ILMN_49043	LOC500879	XM_576279.1	XM_576279.1		500879	62652491	XM_576279.1	LOC500879	XP_576279.1	ILMN_1359528	0000060035	S	1046	ACCAGTAGAAGCCTACAGAGAGGAATCGCAAACATCCCTGAAAGAATTCC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500879), mRNA.					
Rattus norvegicus	RefSeq	GI_62649925-S	ILMN_54538	RGD1310427_PREDICTED	XM_342959.3	XM_342959.3		362643	109475724	XM_342959.3	RGD1310427_predicted	XP_342960.3	ILMN_1356778	0006040112	S	4485	CACGGGTGGGCTTTTGTGTGGGGTGTGTGCATTCCTGCCTGGGGCTTTTG	5	+	158178143-158178192	5q36	PREDICTED: Rattus norvegicus similar to KIAA0090 protein (predicted) (RGD1310427_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27690311-S	ILMN_67136	SPRY1_PREDICTED	XM_227050.4	XM_227050.4		294981	109464700	XM_227050.4	Spry1_predicted	XP_227050.2	ILMN_2039785	0000460615	S	1584	AGATACCTGTGCATGGGAGCCCTGTCCTTGTGCCTACCCTGCTTGCTCTG	2	+	124217078-124217127	2q25	PREDICTED: Rattus norvegicus sprouty homolog 1 (Drosophila) (predicted) (Spry1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27731566-S	ILMN_277284	RGD1565197_PREDICTED	XM_001080773.1	XM_001080773.1		308587	109461945	XM_001080773.1	RGD1565197_predicted	XP_001080773.1	ILMN_2040726	0005870026	S	1470	AGCTGCGGAGAACCACACTGACCCCGCGCACCTCATCCTGAACCGCCACA				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein BC018697 (predicted) (RGD1565197_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639752-S	ILMN_277284	RGD1565197_PREDICTED	XM_001080773.1	XM_001080773.1		308587	109461945	XM_001080773.1	RGD1565197_predicted	XP_001080773.1	ILMN_1349397	0004570204	S	1272	AGCATCATCGTCGTTGTCCTCGTTGTCCGAGGCGGTAGGACCCGAATGGT				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein BC018697 (predicted) (RGD1565197_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658821-S	ILMN_50036	LOC498175	XM_579790.1	XM_579790.1		498175	62658821	XM_579790.1	LOC498175	XP_579790.1	ILMN_1366809	0001990301	S	443	ACACAGGGTTCTGCTTGGAACAGCAAACACCAACCGCGACCAGCCTCACG					PREDICTED: Rattus norvegicus LOC498175 (LOC498175), mRNA.					
Rattus norvegicus	RefSeq	GI_62646416-S	ILMN_61159	LOC296351	XM_230831.3	XM_230831.3		296351	62646416	XM_230831.3	LOC296351	XP_230831.3	ILMN_1361092	0001770347	S	1478	ATTGTTGGAGTCCCCAGAGTCCCTCCACGCCAAGATAGAAGAGGCCGTGG				3q42	PREDICTED: Rattus norvegicus similar to MGC89376 protein (LOC296351), mRNA.					
Rattus norvegicus	RefSeq	GI_62664814-S	ILMN_265132	RGD1565601_PREDICTED	XM_001061299.1	XM_001061299.1		291853	109508411	XM_001061299.1	RGD1565601_predicted	XP_001061299.1	ILMN_2038855	0006450762	S	2488	ACCAGGTAACCCTGACACCGGAGGATGAAGACCTGTACCTGAGCTACTGC				19p13	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1565601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27658425-S	ILMN_265132	RGD1565601_PREDICTED	XM_001061299.1	XM_001061299.1		291853	109508411	XM_001061299.1	RGD1565601_predicted	XP_001061299.1	ILMN_2040437	0002640762	S	2594	GCTGGCTCCACTGAAGTACCTGGCGCTAGAGGAGAAGCTCTACAAGGACC				19p13	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1565601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664800-S	ILMN_264029	RGD1308153_PREDICTED	XM_001060831.1	XM_001060831.1		307639	109508399	XM_001060831.1	RGD1308153_predicted	XP_001060831.1	ILMN_1371936	0004570181	S	500	TGCTGCAGACTTTTATTGGACGGTTCCGCCGCATCATGGACTCCTCCCAG				19p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700085M18 (predicted) (RGD1308153_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653344-S	ILMN_48289	LOC363030	XM_343361.2	XM_343361.2		363030	62653344	XM_343361.2	LOC363030	XP_343362.2	ILMN_1360189	0005570176	S	1585	GGTTTCTCCCGCAAGCCACACCTCATTCGACATCAAAGCATAGCTCACTC					PREDICTED: Rattus norvegicus similar to Hypothetical protein 6720416P20 (predicted) (LOC363030), mRNA.					
Rattus norvegicus	RefSeq	GI_62643888-S	ILMN_267625	CDC42SE1	NM_001039044.1	NM_001039044.1		499672	84794650	NM_001039044.1	Cdc42se1	NP_001034133.1	ILMN_1374230	0003520546	S	801	AACCTGGAATGGGTTCCCTGCTCTGGAATGAAGGTCGGGTGCCGCCTGTT	2	+	190144403-190144452	2q34	Rattus norvegicus CDC42 small effector 1 (Cdc42se1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_51948501-S	ILMN_274621	TMEM106B	NM_001004267.1	NM_001004267.1		312132	51948501	NM_001004267.1	Tmem106b	NP_001004267.1	ILMN_1371474	0006840014	S	977	GCACCACACCTGAGACATGGTCAGAGCTGTCAGTGAGGAGGTACTGCCTC	4	-	38399072-38399121	4q21	Rattus norvegicus transmembrane protein 106B (Tmem106b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			LRRGT00101; MGC94135	LRRGT00101; MGC94135
Rattus norvegicus	RefSeq	GI_62659735-S	ILMN_66624	LOC498284	XM_573509.1	XM_573509.1		498284	62659735	XM_573509.1	LOC498284	XP_573509.1	ILMN_1349778	0004730463	S	877	CCCCAGGCAGTGTGGAGACTTCGGGGCGTTTGATTGGAACGGATACGGAA				13q24	PREDICTED: Rattus norvegicus similar to intelectin (LOC498284), mRNA.					
Rattus norvegicus	RefSeq	GI_16758445-S	ILMN_297029	IDH3A	NM_053638.1	NM_053638.1		114096	16758445	NM_053638.1	Idh3a	NP_446090.1	ILMN_1354708	0001230600	S	2042	GGTGGGGTTTACTCAATCCAAACTGACACAAATCAGGCCAAGCTGGGGCC	8	+	58155639-58155688	8q24	Rattus norvegicus isocitrate dehydrogenase 3 (NAD+) alpha (Idh3a), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+ [goid 4449] [evidence IDA]; Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+ [goid 4449] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653176-S	ILMN_61707	LOC503176	XM_578700.1	XM_578700.1		503176	62653176	XM_578700.1	LOC503176	XP_578700.1	ILMN_1363605	0001690131	S	786	GCCCCAAAGGGCTATTCTGCTGTCCTCCCAACTTCCAACCTGATGCCTGA					PREDICTED: Rattus norvegicus similar to Histone-lysine N-methyltransferase, H3 lysine-4 specific (Histone H3-K4 methyltransferase) (H3-K4-HMTase) (SET domain-containing protein 7) (LOC503176), mRNA.					
Rattus norvegicus	RefSeq	GI_62657286-S	ILMN_264633	ABCA6_PREDICTED	XM_001081607.1	XM_001081607.1		303639	109492141	XM_001081607.1	Abca6_predicted	XP_001081607.1	ILMN_1366255	0006980408	S	3959	TAGGACCCGAGGGCGCTGGTAAAAGTTCCTCTCTCAGGATGATAGCTGGC					PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 6 (predicted) (Abca6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643495-S	ILMN_265179	GPR87_PREDICTED	XM_001058288.1	XM_001058288.1		310443	109466666	XM_001058288.1	Gpr87_predicted	XP_001058288.1	ILMN_1363019	0002640093	S	1327	CCAGGAGTGAAAGCATCAGGTCGCTGCAAAGCGTCCGAAGATCAGAAGTG				2q31	PREDICTED: Rattus norvegicus G protein-coupled receptor 87 (predicted) (Gpr87_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577404-S	ILMN_300048	OLR450	NM_001000288.1	NM_001000288.1		295721	47577404	NM_001000288.1	Olr450	NP_001000288.1	ILMN_1350132	0002970619	S	408	GTCGTCTTCTCTCTGTACCGGGTTAGTAGTTGGGTGTTACATAGGGGGAT	3	-	68892066-68892115	3q24	Rattus norvegicus olfactory receptor 450 (Olr450), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr450; ratchr3-68788895-68787957_ORF	Olr450; ratchr3-68788895-68787957_ORF
Rattus norvegicus	RefSeq	GI_62656502-S	ILMN_53074	ZZEF1_PREDICTED	XM_237787.4	XM_237787.4		287476	109488500	XM_237787.4	Zzef1_predicted	XP_237787.4	ILMN_1352673	0004230497	S	9024	GGCCATCAACTACCCAAACAAGGCCACCCGCCTCTGGAATGTTGAGTGTT	10	+	59819752-59819801	10q24	PREDICTED: Rattus norvegicus zinc finger, ZZ-type with EF hand domain 1 (predicted) (Zzef1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659488-S	ILMN_50383	SMG7_PREDICTED	XM_341132.3	XM_341132.3		360855	109498023	XM_341132.3	Smg7_predicted	XP_341133.3	ILMN_1351202	0003060524	S	5400	AGGGCAGCACTGAGACGGGGTGAGGTGTCGCTCACTGCTCTTCAGAAGGA	13	-	67836062-67836111	13q21	PREDICTED: Rattus norvegicus Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) (predicted) (Smg7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34863327-S	ILMN_62152	LOC363057	XM_347104.1	XM_347104.1		363057	34863327	XM_347104.1	LOC363057	XP_347105.1	ILMN_1369154	0001410300	S	468	GGCTGTAGATTCTGGGGAAAGAAGACCGTGTGCGCTCTGACCCTCTGTTG					PREDICTED: Rattus norvegicus hypothetical LOC363057 (LOC363057), mRNA.					
Rattus norvegicus	RefSeq	GI_13928981-S	ILMN_289448	STX5	NM_031704.1	NM_031704.1		65134	13928981	NM_031704.1	Stx5	NP_113892.1	ILMN_1358358	0001740022	S	1264	AAGTGGCAGGGAACAGAAGCCAGCTAGGGCCAGTGGGGAGGTTGTCTCTA	1	+	211426382-211426431	1q43	Rattus norvegicus syntaxin 5 (Stx5), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]	The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence IEA]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]	MGC156622	MGC156622
Rattus norvegicus	RefSeq	GI_62650425-S	ILMN_277339	GPR113_PREDICTED	XM_001069741.1	XM_001069741.1		298857	109479082	XM_001069741.1	Gpr113_predicted	XP_001069741.1	ILMN_1361216	0004480497	S	2849	TGCGCAAATGGTTGCGAGGCAGCCGGTCCTCTAACTCTGCCATCTCCATG				6q14	PREDICTED: Rattus norvegicus G protein-coupled receptor 113 (predicted) (Gpr113_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981553-S	ILMN_68506	SLC6A4	NM_013034.1	NM_013034.1		25553	6981553	NM_013034.1	Slc6a4	NP_037166.1	ILMN_1355450	0003610184	S	2316	CACGTCAGGGAGTGGAAGGAGGGATGAACGCCACCCAGTCATTCAGCTAG				10q26	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 (Slc6a4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IMP]	The directed movement of serotonin into, out of, within or between cells. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems [goid 6837] [evidence TAS]; The directed movement of serotonin into, out of, within or between cells. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems [goid 6837] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence NAS]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence IEA]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence ISS]; The directed movement of serotonin into a cell, typically presynaptic neurons or glial cells. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems [goid 51610] [evidence IMP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: serotonin(out) + Na+(out) = serotonin(in) + Na+(in) [goid 5335] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), from one side of the membrane to the other [goid 8504] [evidence IEA]; Catalysis of the transfer of serotonin from one side of the membrane to the other. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems [goid 15222] [evidence TAS]; Catalysis of the transfer of serotonin from one side of the membrane to the other. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems [goid 15222] [evidence IMP]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with cocaine (2-beta-carbomethoxy-3-beta-benzoxytropane), an alkaloid obtained from dried leaves of the South American shrub Erythroxylon coca or by chemical synthesis [goid 19811] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_34854255-S	ILMN_291811	CARD6_PREDICTED	XM_226804.2	XM_226804.2		294770	34854255	XM_226804.2	Card6_predicted	XP_226804.2	ILMN_1353035	0001850364	S	3303	GAGACCCAGTCAGCCTAAATCATCCCAGACCAAGCCTTCACAGGCCAGGG	2	-	54283183-54283232	2q16	PREDICTED: Rattus norvegicus caspase recruitment domain family, member 6 (predicted) (Card6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254776-S	ILMN_263594	ACTA1	NM_019212.2	NM_019212.2		29437	40254776	NM_019212.2	Acta1	NP_062085.1	ILMN_1360149	0006220377	S	1290	CTCCATCGCCGCCACTGCAGCCGGCGCCTGTTTTTGACGTGTACATAGAT	19	-	54081594-54081643	19q12	Rattus norvegicus actin, alpha 1, skeletal muscle (Acta1), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Filaments formed of actin and associated proteins; attached to Z discs at either end of sarcomeres in myofibrils [goid 5865] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 9991] [evidence IEP]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; Formation of the actin-based thin filaments of myofibrils [goid 30240] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a long or persistent exposure to a lithium ion stimulus [goid 43460] [evidence IEP]; Any process by which the skeletal muscle fibers change their phenotypic profiles in response to altered functional demands and a variety of signals. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 43503] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650166-S	ILMN_265868	SSU72	NM_001025657.1	NM_001025657.1		298681	71043761	NM_001025657.1	Ssu72	NP_001020828.1	ILMN_1363808	0000460040	S	686	CCAGGACAACCATGAAGAGGCCACCCTGGGAGCATTCCTTATCTGCGAGC	5	+	172590693-172590742	5q36	Rattus norvegicus Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) (Ssu72), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RGD1307854; MGC116291	RGD1307854; MGC116291
Rattus norvegicus	RefSeq	GI_62663040-S	ILMN_68746	LOC498673	XM_573956.1	XM_573956.1		498673	62663040	XM_573956.1	LOC498673	XP_573956.1	ILMN_1355339	0005270563	S	708	CCGGGCTTCCTAGTTCACTTTTGGGCTGTCAAGAGTTGGGCTGCCAAGGA					PREDICTED: Rattus norvegicus similar to BC013672 protein (LOC498673), mRNA.					
Rattus norvegicus	RefSeq	GI_62644622-S	ILMN_63020	LOC502605	XM_578093.1	XM_578093.1		502605	62644622	XM_578093.1	LOC502605	XP_578093.1	ILMN_2039680	0005310392	S	620	AGGACGAGTCCAATGCCACGTGCTCAGGTGTGGAGTCAGGGACCACCATG					PREDICTED: Rattus norvegicus similar to lipoprotein receptor-related protein (LOC502605), mRNA.					
Rattus norvegicus	RefSeq	GI_61097944-S	ILMN_269099	GFRA3	NM_053398.1	NM_053398.1		84422	61097944	NM_053398.1	Gfra3	NP_445850.1	ILMN_1374211	0001980524	S	1914	AACCGGGTGAGGAAGAGACCCAGTAACCCTACTGCTAAGTGCTGTGTGAC	18	-	27167657-27167706	18p12	Rattus norvegicus GDNF family receptor alpha 3 (Gfra3), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence IEA]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 8046] [evidence IEA];  [goid 8046] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_33149326-S	ILMN_263777	AVPR1A	NM_053019.2	NM_053019.2		25107	33149326	NM_053019.2	Avpr1a	NP_444178.2	ILMN_1371178	0002100528	S	1424	TCTAACAACCGGAGCCCAACGAACAGCACTGGGATGTGGAAGGACTCGCC	7	+	62229289-62229338	7q22	Rattus norvegicus arginine vasopressin receptor 1A (Avpr1a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence TAS]; The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence ISS]; The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence IEA]; Aggressive behavior of a female to protect her offspring from a threat [goid 2125] [evidence IMP]; The process that increases the force with which blood travels through the systemic arterial circulatory system [goid 3084] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence NAS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; Any process that stops, prevents or reduces the receptiveness of a female to male advances [goid 7621] [evidence IMP]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IMP]; Any process that activates or increases the frequency or rate of heart contraction [goid 10460] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of glutamate [goid 14049] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse [goid 14902] [evidence IEP]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IMP]; The process of renal water excretion [goid 30146] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin [goid 31394] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of a process that reduces the internal pH of a cell [goid 32849] [evidence IMP]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IEP]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IDA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of water [goid 42631] [evidence IEP]; Female behaviors associated with the care and rearing of offspring [goid 42711] [evidence IMP]; The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract [goid 42713] [evidence IMP]; The hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow [goid 43084] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen [goid 45819] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; Any process that modulates the frequency, rate or extent of the regulated release of adrenocorticotropic hormone from a cell or group of cells [goid 51459] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51970] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence IMP]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence TAS]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with a V1A vasopressin receptor [goid 31894] [evidence IDA]	V1a; MGC108538; AVPR; V1aR	V1a; MGC108538; AVPR; V1aR
Rattus norvegicus	RefSeq	GI_62645931-S	ILMN_277632	BTBD3_PREDICTED	XM_001081301.1	XM_001081301.1		311462	109470885	XM_001081301.1	Btbd3_predicted	XP_001081301.1	ILMN_1370335	0006200471	S	2278	GGGAGATCATGTGCTTTTCCAAGTGCCCACCAACCTCCTACTTCCGTACC				3q36	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 3 (predicted) (Btbd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660470-S	ILMN_49717	KLHL5	XM_223418.4	XM_223418.4		305351	109499645	XM_223418.4	Klhl5	XP_223418.2	ILMN_1354982	0001190037	S	2638	GCCCCCAGAACCACCCAGCACCAACTGGAGTCACATTGTCCAGAGTTATC	14	-	45846871-45846920	14p11	PREDICTED: Rattus norvegicus kelch-like 5 (Drosophila) (Klhl5), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666598-S	ILMN_264362	TIMM17B_PREDICTED	XM_001063717.1	XM_001063717.1		317374	109511583	XM_001063717.1	Timm17b_predicted	XP_001063717.1	ILMN_1355343	0002690647	S	728	CTTGTCACATGGGTTCCCGTCTTGTGTCTCAGGGCTTCACAGCTCCACAC				Xq13	PREDICTED: Rattus norvegicus translocase of inner mitochondrial membrane 17 homolog B (yeast) (predicted) (Timm17b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660392-S	ILMN_276570	DCUN1D4_PREDICTED	XM_001068939.1	XM_001068939.1		360928	109500468	XM_001068939.1	Dcun1d4_predicted	XP_001068939.1	ILMN_1351328	0005900239	S	1060	GCACTGTCTGCCTCTCGCAGGGGTGTTTGGTGTTTGCTATTGGATGGGCC				14p11	PREDICTED: Rattus norvegicus DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) (predicted) (Dcun1d4_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.18886	ILMN_276570	DCUN1D4_PREDICTED	XM_001068939.1	XM_001068939.1		360928	109500468	XM_001068939.1	Dcun1d4_predicted	XP_001068939.1	ILMN_1530461	0005220114	S	3117	AAATTCCATTTCATCTACAGTGAGCATTTTGGTAATAGTGACTCAAGTAA				14p11	PREDICTED: Rattus norvegicus DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) (predicted) (Dcun1d4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507060-S	ILMN_280067	PCSK1N	NM_019279.1	NM_019279.1		246333	9507060	NM_019279.1	Pcsk1n	NP_062152.1	ILMN_1370946	0000360632	S	679	CGAGCTGTGGACCAGGATTTGGGTCCCGAGGTGCCTCCTGAGAACGTACT	X	-	26614797-26614846	Xq13	Rattus norvegicus proprotein convertase subtilisin/kexin type 1 inhibitor (Pcsk1n), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]	The physiological process by which dietary excess is sensed by the central nervous system and results in a reduction in food intake and increased energy expenditure [goid 2021] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence ISS]	Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IDA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]	Saas	Saas
Rattus norvegicus	RefSeq	GI_62657892-S	ILMN_59822	LOC360717	XM_340988.2	XM_340988.2		360717	62657892	XM_340988.2	LOC360717	XP_340989.2	ILMN_1369722	0000450458	S	2206	ACAAGAACAAGTCTGGGGTGGTTGTGGAGAGCTAGTGCTGAAATGTGGAG				11q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921521N14 (predicted) (LOC360717), mRNA.					
Rattus norvegicus	RefSeq	GI_25453381-S	ILMN_55754	CITED1	NM_172055.1	NM_172055.1		64466	25453381	NM_172055.1	Cited1	NP_742052.1	ILMN_1364035	0001580487	S	0	ACTAGTGATTTAGGATCCAATGCCAACTATGTCGAGGCCTGCACTGGATG				Xq31	Rattus norvegicus Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 (Cited1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IEA]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Msg1	Msg1
Rattus norvegicus	RefSeq	GI_47577144-S	ILMN_286189	OLR334	NM_001001041.1	NM_001001041.1		405927	47577144	NM_001001041.1	Olr334	NP_001001041.1	ILMN_1367871	0002940286	S	658	GTCTATATCGTCTTGTCCATTATGAAGATCACTTCAGCTAAGGGTAGGTC	1	-	215255527-215255576	1q43	Rattus norvegicus olfactory receptor 334 (Olr334), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr334	Olr334
Rattus norvegicus	RefSeq	GI_62654742-S	ILMN_50199	GPR115_PREDICTED	XM_236958.4	XM_236958.4		301269	109485842	XM_236958.4	Gpr115_predicted	XP_236958.4	ILMN_1358005	0003060017	S	1835	AGACCCAAAGAGCTGCCGTTGGTAGTTCCATGTTCCAGGAAGTAAGAGCC	9	+	13970762-13970811	9q12	PREDICTED: Rattus norvegicus G protein-coupled receptor 115 (predicted) (Gpr115_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644324-S	ILMN_270467	PLA2G12A_PREDICTED	XM_001076849.1	XM_001076849.1		362039	109467633	XM_001076849.1	Pla2g12a_predicted	XP_001076849.1	ILMN_1371313	0006350026	S	1284	CCAGAAACACAGCACTCCTGTTTCACCCACCACTCATAGCAATCGCCGTC				2q43	PREDICTED: Rattus norvegicus phospholipase A2, group XIIA (predicted) (Pla2g12a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577120-S	ILMN_271888	OLR757	NM_001000613.1	NM_001000613.1		404802	47577120	NM_001000613.1	Olr757	NP_001000613.1	ILMN_1369446	0002760008	S	495	CCTCTCCTTTTGTGGTCCTAACAAACTGGACAGCTTTTACTGTGACTTCC	3	+	97010032-97010081	3q34	Rattus norvegicus olfactory receptor 757 (Olr757), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr757	Olr757
Rattus norvegicus	RefSeq	GI_6981707	ILMN_52723	VSNL1	NM_012686.2	NM_012686.2		24877	62461576	NM_012686.2	Vsnl1	NP_036818.2	ILMN_1650420	0004050315	S	744	CAAAGAAGCTGCAAAAAGCGACCCTTCCATTGTATTACTCCTGCAGTGCG	6	-	34771132-34771181	6q14	Rattus norvegicus visinin-like 1 (Vsnl1), mRNA.		The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence TAS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]	Nvp1; Ratnvp1; MGC105475	Nvp1; Ratnvp1; MGC105475
Rattus norvegicus	RefSeq	GI_62657157-S	ILMN_69523	LOC303575	XM_221002.3	XM_221002.3		303575	62657157	XM_221002.3	LOC303575	XP_221002.3	ILMN_1367810	0003840435	S	2656	TGCCAACCCAGCAAAGGACGAGAGAGACAATGGACCACCTCCACCCAAGC				10q32.1	PREDICTED: Rattus norvegicus similar to 3000004C01Rik protein (predicted) (LOC303575), mRNA.					
Rattus norvegicus	RefSeq	GI_62641291-S	ILMN_278417	RGD1563217_PREDICTED	XM_001080053.1	XM_001080053.1		499265	109462892	XM_001080053.1	RGD1563217_predicted	XP_001080053.1	ILMN_1366243	0005670364	S	311	TGCACGTGAGCTTCCAGAAAGGAGCCTAGTGATCAGAGCAACAGTAGCCC				1q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930451I11 (predicted) (RGD1563217_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651590-S	ILMN_49199	LOC500755	XM_576133.1	XM_576133.1		500755	62651590	XM_576133.1	LOC500755	XP_576133.1	ILMN_1370302	0000840270	S	2843	GATCGATCCATGCTTATCACCCTGGAAGCATCTGGAACACATGGGCACTG					PREDICTED: Rattus norvegicus similar to LRRGT00008 (LOC500755), mRNA.					
Rattus norvegicus	RefSeq	GI_47577724	ILMN_273140	OLR126	NM_001000158.1	NM_001000158.1		293262	47577724	NM_001000158.1	Olr126	NP_001000158.1	ILMN_1650074	0004850435	S	434	GCCTTGGAGCTGGTGTCCTACTCAGGTCTCTCATTCTCACATTCCCAATG	1	-	161521178-161521227	1q32	Rattus norvegicus olfactory receptor 126 (Olr126), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr126	Olr126
Rattus norvegicus	RefSeq	GI_62661530-S	ILMN_268992	ADPRTL1	XM_001059899.1	XM_001059899.1		361046	109502479	XM_001059899.1	Adprtl1	XP_001059899.1	ILMN_1361818	0006980102	S	5108	AGGGACCTGCTGGCCTCTGCATTCCAAGTGCTGGGTTTAAAGGTGTGTGC				15p12	PREDICTED: Rattus norvegicus ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 (Adprtl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62657808-S	ILMN_49369	LOC363755	XM_577176.1	XM_577176.1		363755	62657808	XM_577176.1	LOC363755	XP_577176.1	ILMN_1357953	0001990551	S	640	AAGTGTCTGAATTGGATGGCAGAGAAGTGGGGGATGCCCAGCCTGCGACG					PREDICTED: Rattus norvegicus similar to NOL1/NOP2/Sun domain family 3 (LOC363755), mRNA.					
Rattus norvegicus	RefSeq	GI_62644329-S	ILMN_47909	LOC365888	XM_345262.2	XM_345262.2		365888	62644329	XM_345262.2	LOC365888	XP_345263.2	ILMN_1356305	0002940280	S	269	TGCCCTGCCCAGGCACAGAAAACCAAAGCCTTATGACAGTGATCCAGCCC				2q34	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (LOC365888), mRNA.					
Rattus norvegicus	RefSeq	GI_62718263-S	ILMN_50791	LOC501343	XM_576754.1	XM_576754.1		501343	62718263	XM_576754.1	LOC501343	XP_576754.1	ILMN_1362276	0003290563	S	956	AACACTGAGCCAGCCTGACTGATTGAGGTCTTACTCACTTTCTTCTTCAG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501343), mRNA.					
Rattus norvegicus	RefSeq	GI_62645617-S	ILMN_67571	LOC499873	XM_575214.1	XM_575214.1		499873	62645617	XM_575214.1	LOC499873	XP_575214.1	ILMN_1363370	0000380315	S	826	AGTGCAACTCGGAGAACCTGGGTAAAGCACACAGCGGCCAAAGCGAAGGG				3q35	PREDICTED: Rattus norvegicus similar to Opa-interacting protein 5 (LOC499873), mRNA.					
Rattus norvegicus	RefSeq	GI_62665287-S	ILMN_272416	AARS	XM_001077503.1	XM_001077503.1		292023	109508903	XM_001077503.1	Aars	XP_001077503.1	ILMN_1355155	0001570309	S	2977	GCCCTCTCAGGAAAGCATCTCCCCGACAACCAGTCATGTTCAGGTGCAGG				19q12	PREDICTED: Rattus norvegicus alanyl-tRNA synthetase (Aars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6419] [evidence IEA]; The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules [goid 43039] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala) [goid 4813] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of two substances via a carbon-oxygen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate, to form aminoacyl-tRNA or a related compound [goid 16876] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981033-S	ILMN_265631	FOXA1	NM_012742.1	NM_012742.1		25098	6981033	NM_012742.1	Foxa1	NP_036874.1	ILMN_1366646	0006940053	S	1773	GCAGCAGCATTGGAAAGTAGCCCAGAACTCCACACTGGCTGAAACTTGGA	6	-	77976727-77976776	6q23	Rattus norvegicus forkhead box A1 (Foxa1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2070] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid [goid 30850] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The process whereby a cell becomes capable of differentiating autonomously into a neuron in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed [goid 48665] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IPI]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	Hnf3a	Hnf3a
Rattus norvegicus	RefSeq	GI_62646552-S	ILMN_68449	URKL1_PREDICTED	XM_230967.4	XM_230967.4		311721	109469370	XM_230967.4	Urkl1_predicted	XP_230967.4	ILMN_1366763	0005720601	S	2850	AAAGTCTGTCAGGAGGAAAGAAGCGGGGCCGCAAACCCAAGGAACGGTCC	3	-	170723842-170723891	3q43	PREDICTED: Rattus norvegicus uridine kinase-like 1 (predicted) (Urkl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660069-S	ILMN_67871	LOC301978	XM_217512.3	XM_217512.3		301978	62660069	XM_217512.3	LOC301978	XP_217512.3	ILMN_1353547	0005340278	S	44	CTTCACTGGGTTGGAGGCTGTTAGATTCCTGCGTCAGTTCACTTGTGTTC				14p22	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC301978), mRNA.					
Rattus norvegicus	RefSeq	GI_31377506	ILMN_54460	LPAR1	NM_053936.3	NM_053936.3		116744	58696431	NM_053936.3	Lpar1	NP_446388.1	ILMN_1650631	0005900022	S	1965	CTGCAAGCTTTGGAGATGAAGTGCTGTAGCGTTGTCCCTGCACAGTGAGG	5	-	76450749-76450798	5q24	Rattus norvegicus lysophosphatidic acid receptor 1 (Lpar1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The assembly of a bleb, a cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32060] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Rho protein signal transduction [goid 35025] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IDA]	Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence ISS]; Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IEA]; Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IDA]; Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IMP]; Interacting selectively with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide [goid 1965] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IMP]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]	MGC105279; Lpar1	MGC105279; Lpar1
Rattus norvegicus	RefSeq	GI_47576672-S	ILMN_299401	OLR850	NM_001000401.1	NM_001000401.1		298042	47576672	NM_001000401.1	Olr850	NP_001000401.1	ILMN_1356680	0003840097	S	533	CTTGTGAGGTCTTAGCTGTTCTCAAGCTAGCATGTGCTGATATATCTCTC	5	-	70262010-70262059	5q24	Rattus norvegicus olfactory receptor 850 (Olr850), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr850; ratchr5-70267705-70266755_ORF	Olr850; ratchr5-70267705-70266755_ORF
Rattus norvegicus	RefSeq	GI_62644424-S	ILMN_52443	LOC365947	XM_345294.2	XM_345294.2		365947	62644424	XM_345294.2	LOC365947	XP_345295.2	ILMN_1366962	0003610193	S	755	ATGCAGGCAGATGTACGAGCCTGAGATTGGATGGCTAGAACGGCAAGGAG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (LOC365947), mRNA.					
Rattus norvegicus	RefSeq	GI_62665050-S	ILMN_51860	LOC498930	XM_574216.1	XM_574216.1		498930	62665050	XM_574216.1	LOC498930	XP_574216.1	ILMN_1350216	0005340692	S	384	GACTTTTCCTGGTGCTCCAAGGATGGTATCCGAGGGGCCATCATCCTGGT					PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC498930), mRNA.					
Rattus norvegicus	RefSeq	GI_40018589-S	ILMN_263250	NFKBIE	NM_199111.1	NM_199111.1		316241	40018589	NM_199111.1	Nfkbie	NP_954542.1	ILMN_1370890	0002480017	S	1541	GCTGACATTACCAGCCACCAGGAAAACAGGAATGAGCGAACTGACCCCTG	9	-	11044126-11044175	9q12	Rattus norvegicus nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon (Nfkbie), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC72568	MGC72568
Rattus norvegicus	RefSeq	GI_62650517-S	ILMN_281644	CPSF3	NM_001030030.1	NM_001030030.1		298916	71795626	NM_001030030.1	Cpsf3	NP_001025201.1	ILMN_1366285	0002940056	S	2065	AGGAAGTGAGGATGATGAGTCCCTCCGAGAAATGGTGGAACTGGCCGCCC	6	+	41873451-41873500	6q16	Rattus norvegicus cleavage and polyadenylation specificity factor 3 (Cpsf3), mRNA.		The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC124885	MGC124885
Rattus norvegicus	RefSeq	GI_23618882-S	ILMN_301455	GZMA	NM_153468.1	NM_153468.1		266708	23618882	NM_153468.1	Gzma	NP_703198.1	ILMN_1366826	0002480403	S	673	ACAGCTTTTGGCCTTGAGGGAAGGTGTGGAGACCCCAAAGGGCCTGGCAT	2	-	44488358-44488407	2q14	Rattus norvegicus granzyme A (Gzma), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic degradation of lamins during apoptosis, leading to the irreversible breakdown of the nuclear lamina [goid 6922] [evidence ISS]; The proteolytic degradation of lamins during apoptosis, leading to the irreversible breakdown of the nuclear lamina [goid 6922] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718312-S	ILMN_262756	LOC501479	XM_001081012.1	XM_001081012.1		501479	109516993	XM_001081012.1	LOC501479	XP_001081012.1	ILMN_1370374	0006100097	S	931	CTCCAAATGCTCTTGTTTCATTCCTGGGTCTGCAAGGTCACCTTCTTATC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC501479), mRNA.					
Rattus norvegicus	RefSeq	GI_62642011-S	ILMN_69842	LOC497742	XM_579138.1	XM_579138.1		497742	62642011	XM_579138.1	LOC497742	XP_579138.1	ILMN_1349796	0006660575	S	3770	AGGCGGGCATGTTTGACCAGAAGTCATCCAGCCATGAGCGGAGGGCATTT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001004446 (LOC497742), mRNA.					
Rattus norvegicus	RefSeq	GI_62648346-S	ILMN_64362	LOC500368	XM_575726.1	XM_575726.1		500368	62648346	XM_575726.1	LOC500368	XP_575726.1	ILMN_1353233	0005420050	S	2840	GGGCTCTGAGCATAGCTTGGAGTAACCAAGGGCTAAAGACAGAGCTCCCA				4q44	PREDICTED: Rattus norvegicus similar to male sterility domain containing 1 (LOC500368), mRNA.					
Rattus norvegicus	RefSeq	GI_62651420-S	ILMN_283133	ITGB8_PREDICTED	XM_001062206.1	XM_001062206.1		362800	109480085	XM_001062206.1	Itgb8_predicted	XP_001062206.1	ILMN_1353484	0002230288	S	2349	GATCAGTGTAAAGCCTCCTGTGCTGTCATGGAACAACATCCTGTGGCCCA				6q33	PREDICTED: Rattus norvegicus integrin beta 8 (predicted) (Itgb8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663002-S	ILMN_64752	RGD1565806_PREDICTED	XM_225053.3	XM_225053.3		290916	109503617	XM_225053.3	RGD1565806_predicted	XP_225053.1	ILMN_1363683	0001500280	S	116	AGATCCATATGTCACACACTTTCTGGTGGCCCAAGACCCTGCAGCTCTGG	16	-	88196792-88196841	16q12.5	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (predicted) (RGD1565806_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799393-S	ILMN_263209	EMP1	NM_012843.2	NM_012843.2		25314	56799393	NM_012843.2	Emp1	NP_036975.1	ILMN_1350180	0005690204	S	1962	GGGTGTCCAGTCAGATGGTAGCTGAATTGTTGGGGCTGCAAGGGTATTCC	4	+	172334845-172334894	4q43	Rattus norvegicus epithelial membrane protein 1 (Emp1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IPI]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEP]		CL-20; MGC93627; EMP-1; TMP; ENP1MR	CL-20; MGC93627; EMP-1; TMP; ENP1MR
Rattus norvegicus	RefSeq	GI_62645330-S	ILMN_53557	NCKAP1	XM_230038.4	XM_230038.4		58823	109468360	XM_230038.4	Nckap1	XP_230038.4	ILMN_1351310	0000070603	S	3665	TGGCCAGCAATGTGATGTCCCAGTACAGCCCTGCAATAGAAGGACACTGC	3	-	63202918-63202926:63203419-63203459	3q24	PREDICTED: Rattus norvegicus NCK-associated protein 1 (Nckap1), mRNA.	A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The specification of the anterior/posterior axis of the embryo by products of genes expressed in the zygote; exemplified in insects by the gap genes, pair rule genes and segment polarity gene cascade [goid 7354] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The orderly movement of mesodermal cells from one site to another [goid 8078] [evidence ISS]; The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form [goid 10172] [evidence ISS]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; The process whose specific outcome is the progression of the notochord over time, from its formation to the mature structure. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column [goid 30903] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of polarized actin-based cytoskeletal structures [goid 30950] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression) [goid 42074] [evidence ISS]; Any process by which a protein is transported to, or maintained in, basal regions of the cell [goid 45175] [evidence ISS]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence ISS]; The process whose specific outcome is the progression of the paraxial mesoderm over time, from its formation to the mature structure. The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube [goid 48339] [evidence ISS]; The process by which the anatomical structures of the paraxial mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48340] [evidence ISS]; The process by which the anatomical structures of the notochord are generated and organized. Morphogenesis pertains to the creation of form. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column [goid 48570] [evidence ISS]; The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48617] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660013-S	ILMN_274805	RGD1566389_PREDICTED	XR_007702.1	XR_007702.1		305112	109500196	XR_007702.1	RGD1566389_predicted		ILMN_1364640	0006350364	S	911	TCCCTACCAGCCAGAGAGACTTAACTCATAGCACATTCTATGGAACCCTT				14p22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor Go-VN13C (predicted) (RGD1566389_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643123-S	ILMN_55262	LOC294862	XM_215517.3	XM_215517.3		294862	62643123	XM_215517.3	LOC294862	XP_215517.3	ILMN_1355970	0002760138	S	4664	CAGAGTGGTGGTAGCATATCAGGAGGGAGCACATCAAGGTGACGGGACAC				2q22	PREDICTED: Rattus norvegicus similar to KIAA0597 protein (LOC294862), mRNA.					
Rattus norvegicus	RefSeq	GI_62639408-S	ILMN_53629	GPATC1_PREDICTED	XM_214906.4	XM_214906.4		292810	109458578	XM_214906.4	Gpatc1_predicted	XP_214906.2	ILMN_1368324	0000070168	S	2619	GAGTACAGATAGCAGTGACAGTGGGAGTGATGCAGGAGGGTCCACAGAGC	1	-	87801603-87801652	1q21	PREDICTED: Rattus norvegicus G patch domain containing 1 (predicted) (Gpatc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658909-S	ILMN_54741	LOC363920	XM_344109.2	XM_344109.2		363920	62658909	XM_344109.2	LOC363920	XP_344110.2	ILMN_1354188	0002190017	S	406	CTGTTCAGCGAAGGCGACCAGTGTTTGCAGAGGACAAGGGCCACCCTAAC					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33630 (LOC363920), mRNA.					
Rattus norvegicus	RefSeq	GI_62663843-S	ILMN_279358	RGD1563690_PREDICTED	XR_007352.1	XR_007352.1		364736	109505861	XR_007352.1	RGD1563690_predicted		ILMN_1356899	0005890372	S	6	CCTGGTGACCGCCGATGATCTCTTAGATGAATACTCTGTGGTCGGCTATG				17q12.1	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S6 (predicted) (RGD1563690_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50979273-S	ILMN_292769	EML5	XM_001064022.1	XM_001064022.1		444982	109478535	XM_001064022.1	Eml5	XP_001064022.1	ILMN_1373851	0003290088	S	5613	CCTGGAACCTCTGTTCATCTCGTGCTGGAAGTGCTCTGGGCCACTGATTC	6	-	122970440-122970489	6q32	PREDICTED: Rattus norvegicus echinoderm microtubule associated protein like 5, transcript variant 1 (Eml5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_20301989-S	ILMN_282674	PODXL	NM_138848.1	NM_138848.1		192181	20301989	NM_138848.1	Podxl	NP_620203.1	ILMN_1369415	0006840300	S	5125	CAACCAGCTTGCCCAGGAGATTGGGGGAGTGTATGTGGTAGTGGACAGGG	4	-	58612009-58612058	4q22	Rattus norvegicus podocalyxin-like (Podxl), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IDA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	podocalyxin	podocalyxin
Rattus norvegicus	RefSeq	GI_62664269-A	ILMN_281790	PCDHGB7	NM_001012215.1	NM_001012215.1		364844	58865997	NM_001012215.1	Pcdhgb7	NP_001012215.1	ILMN_1376897	0004150286	S	2296	TTGGCCATTGCTTTGCGCCTGCGACAGTCTTCCAGCCCATCAACCACTGG	18	+	30662575-30662624	18p11	Rattus norvegicus protocadherin gamma subfamily B, 7 (Pcdhgb7), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664116-S	ILMN_269952	RGD1566178_PREDICTED	XM_001054994.1	XM_001054994.1		364823	109507000	XM_001054994.1	RGD1566178_predicted	XP_001054994.1	ILMN_1359079	0000380563	S	1390	GCAGCCCACGCAGGAGCAGTGCACAATGGGAAAATATACATTTCAGGGGG				18p12	PREDICTED: Rattus norvegicus similar to Kelch-like protein 14 (predicted) (RGD1566178_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34858186-S	ILMN_276932	RGD1564386_PREDICTED	XM_001074961.1	XM_001074961.1		310592	109514335	XM_001074961.1	RGD1564386_predicted	XP_001074961.1	ILMN_1372359	0005860162	S	460	CCCTCCCTTAGTAGGCCTGGACATAGCATGAGACCTGAAATCAAGGATCC				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1564386_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577154	ILMN_272826	OLR338	NM_001000252.1	NM_001000252.1		293781	47577154	NM_001000252.1	Olr338	NP_001000252.1	ILMN_1650529	0001500377	S	404	CTCCAACTACTTGTGCATGTCTGACCATAGCCTGCTACGCTGGGGGTTTC	1	+	215696416-215696465	1q43	Rattus norvegicus olfactory receptor 338 (Olr338), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr338	Olr338
Rattus norvegicus	RefSeq	GI_62653105-S	ILMN_262521	RGD1566321_PREDICTED	XM_001065624.1	XM_001065624.1		300238	109482948	XM_001065624.1	RGD1566321_predicted	XP_001065624.1	ILMN_1373172	0003520280	S	1856	TCTCCTACAAAGAAGTGGAGGCTGCTCTAGCCAAGGTGGGCCCTCGGGCT				7q36	PREDICTED: Rattus norvegicus similar to fidgetin-like 1 (predicted) (RGD1566321_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648873-A	ILMN_290852	TESK1	NM_031578.1	NM_031578.1		29460	13928783	NM_031578.1	Tesk1	NP_113766.1	ILMN_1376473	0000630022	S	3166	GAGCACTTCCTGTCCAACCCCTGGGATCACTGGACTAGACACAGCATTGC				5q22	Rattus norvegicus testis-specific kinase 1 (Tesk1), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090444-S	ILMN_282898	PHOSPHO2	NM_001007642.1	NM_001007642.1		295663	56090444	NM_001007642.1	Phospho2	NP_001007643.1	ILMN_1350717	0001990577	S	1781	AGCCCTGAAGACCACCTTCATCCGAGAGGGCCCAGCATGGGGTTCATGCA	3	+	51944660-51944709	3q21	Rattus norvegicus phosphatase, orphan 2 (Phospho2), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: pyridoxal 5'-phosphate + H2O = pyridoxal + phosphate [goid 33883] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654122-S	ILMN_64375	LOC367135	XM_578747.1	XM_578747.1		367135	62654122	XM_578747.1	LOC367135	XP_578747.1	ILMN_1363153	0003440546	S	902	CCCCTTCTTGACTGAGTTGAAAGCCCCAGTCCACAGCAAGCCCGATGAGG				8q31	PREDICTED: Rattus norvegicus similar to inositol polyphosphate multikinase (LOC367135), mRNA.					
Rattus norvegicus	RefSeq	GI_62655604-S	ILMN_61531	LOC288959	XM_222529.2	XM_222529.2		288959	62655604	XM_222529.2	LOC288959	XP_222529.2	ILMN_1370442	0003990438	S	1024	GCAGCAACGGGCAAAAAATGAGCTCCGAGAAAGGAGGTTCACAAGCAGCC				10q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921537P18 (LOC288959), mRNA.					
Rattus norvegicus	RefSeq	GI_41054893-S	ILMN_263286	DSG4	NM_199490.1	NM_199490.1		291754	41054893	NM_199490.1	Dsg4	NP_955784.1	ILMN_1363146	0006110008	S	2776	GACTCTCAGCTTCCACCCAATGTAGTCGTGACCGAAACCGTGATGGCACC	18	+	12209486-12209535	18p12	Rattus norvegicus desmoglein 4 (Dsg4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence ISS]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IMP]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658004-S	ILMN_279492	RGD1311100_PREDICTED	XM_001072940.1	XM_001072940.1		303879	109494515	XM_001072940.1	RGD1311100_predicted	XP_001072940.1	ILMN_1360721	0004850685	S	1159	TTACCGCCAGACCTGGACTCAACGCTCAAAGCCTGACAAGAGCGGCTTGG				11q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D630035O19 (predicted) (RGD1311100_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078542-S	ILMN_284691	LHFPL5	NM_001013906.1	NM_001013906.1		294303	62078542	NM_001013906.1	Lhfpl5	NP_001013928.1	ILMN_1355987	0006510139	S	1045	GCGCAGATAACTGTGGTGATCCAAAGAAGATCCCCGGGTGTGTGGCGCAC	20	+	6823919-6823968	20p12	Rattus norvegicus lipoma HMGIC fusion partner-like 5 (Lhfpl5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_38454301-S	ILMN_262605	MUP4	NM_198784.1	NM_198784.1		362527	38454301	NM_198784.1	Mup4	NP_942079.1	ILMN_1370140	0005900102	S	560	ATCGCTGTCTCAAGGCCCGAGGTTGAAGAAAGGCCTGAGCCTCCAGTGCT	5	-	78216387-78216391:78217226-78217245:78217246-78217270	5q24	Rattus norvegicus major urinary protein 4 (Mup4), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence TAS]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659931-S	ILMN_56142	PTPN14_PREDICTED	XM_223062.4	XM_223062.4		305064	109498300	XM_223062.4	Ptpn14_predicted	XP_223062.4	ILMN_1359833	0006370091	S	4032	CCAGACCATCGCGCAGTACAAGTTCGTCTACCAAGTCCTCGTCCAGTTCC	13	+	106149845-106149894	13q27	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 14 (predicted) (Ptpn14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655560-S	ILMN_265272	LOC364127	XR_008918.1	XR_008918.1		364127	109500430	XR_008918.1	LOC364127		ILMN_1369028	0005670092	S	833	GGACCCTTCAAACACTAAAGCACTATACCGAAAAGCGCAAGGATGGCAAG				14p21	PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase D (LOC364127), mRNA.					
Rattus norvegicus	RefSeq	GI_62657838	ILMN_302453	RGD1562069_PREDICTED	XR_008096.1	XR_008096.1		363772	109494287	XR_008096.1	RGD1562069_predicted		ILMN_1650911	0002970180	S	647	GGACTGCCCAGAACATCATCCCTGCAAGGCTGTGGTCAAGGTTATCCCAG				11q21	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1562069_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61740618-S	ILMN_277645	MRPL41	NM_001013426.1	NM_001013426.1		296551	61740618	NM_001013426.1	Mrpl41	NP_001013444.1	ILMN_1369297	0000780341	S	487	TTGATGCTAACAACCTGGAGAAATATGGCTTTGAGCCCACACAGGAAGGC	3	-	5120468-5120517	3p13	Rattus norvegicus mitochondrial ribosomal protein L41 (Mrpl41), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]	MGC109209	MGC109209
Rattus norvegicus	RefSeq	GI_56799409-S	ILMN_267360	HNMT	NM_031044.2	NM_031044.2		81676	56799409	NM_031044.2	Hnmt	NP_112306.1	ILMN_1363411	0004780014	S	1555	CATGGGCTGGTGGGATGGTTCTTCCAAAGGACCTGCTAGGGTTCAGTTTG	3	-	2057749-2057798	3p13	Rattus norvegicus histamine N-methyltransferase (Hnmt), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule [goid 8170] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + histamine = S-adenosyl-L-homocysteine + Nt-methylhistamine [goid 46539] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + histamine = S-adenosyl-L-homocysteine + Nt-methylhistamine [goid 46539] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105411	MGC105411
Rattus norvegicus	RefSeq	GI_13928919-S	ILMN_276881	SLC28A2	NM_031664.1	NM_031664.1		60423	13928919	NM_031664.1	Slc28a2	NP_113852.1	ILMN_1368133	0006110270	S	2590	CTTGGTGGTACACCCTGTGGTCACTTACCTGTAAGCTCAGAGCTAAGGGG	3	-	109350761-109350810	3q35	Rattus norvegicus solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 (Slc28a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose [goid 1882] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + Na+(out) = nucleoside(in) + Na+(in) [goid 5415] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + Na+(out) = nucleoside(in) + Na+(in) [goid 5415] [evidence IEA]; Catalysis of the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other [goid 15211] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657502-S	ILMN_68654	FOXK2_PREDICTED	XM_221212.4	XM_221212.4		303753	109489517	XM_221212.4	Foxk2_predicted	XP_221212.4	ILMN_1368697	0005910156	S	2488	GGGCCCTGCGGTTGGACTTCACCTCTCAGCACTGAAAACATGAACCCAGG	10	+	110548721-110548770	10q32.3	PREDICTED: Rattus norvegicus forkhead box K2 (predicted) (Foxk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642033-S	ILMN_263580	SMC5L1_PREDICTED	XM_001078644.1	XM_001078644.1		293967	109463693	XM_001078644.1	Smc5l1_predicted	XP_001078644.1	ILMN_1365079	0004760358	S	3336	CACCGCCTGTAAAGAGAACACATCGCAGTACTTCTTCATCACACCGAAGC				1q51	PREDICTED: Rattus norvegicus SMC5 structural maintenance of chromosomes 5-like 1 (yeast) (predicted) (Smc5l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655937-S	ILMN_62959	FBXW11_PREDICTED	XM_220281.3	XM_220281.3		303024	62655937	XM_220281.3	Fbxw11_predicted	XP_220281.3	ILMN_1358124	0006450114	S	1803	CAGCCTGCACTTTGGCCCTCTTCAGGGTTTCCTGGTCTTGAACTACTGGC				10q12	PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 11 (predicted) (Fbxw11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641726-S	ILMN_275324	PELI3_PREDICTED	XM_001072249.1	XM_001072249.1		309157	109463353	XM_001072249.1	Peli3_predicted	XP_001072249.1	ILMN_1359681	0001400348	S	1719	CCAGCTTAGACCGTTGTGCCCTGAACCTGCCAGTCCCGTTACAGCTATCC				1q43	PREDICTED: Rattus norvegicus pellino homolog 3 (Drosophila) (predicted) (Peli3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54400713-S	ILMN_296898	DHX40	NM_001005873.1	NM_001005873.1		287595	54400713	NM_001005873.1	Dhx40	NP_001005873.1	ILMN_1365095	0006760026	S	2358	GCGCGGGCTCGTTTCCTTGAGAGAAAGCAACAGAGAATCCAGGACCACAG	10	-	75044095-75044144	10q26	Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 40 (Dhx40), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94894	MGC94894
Rattus norvegicus	RefSeq	GI_62649961	ILMN_262476	TNFRSF8	NM_019135.1	NM_019135.1		25069	9507192	NM_019135.1	Tnfrsf8	NP_062008.1	ILMN_1651014	0005860131	S	3260	AGGGCAGGAGCCCATGACCAGCTGTGTGCCCTTTAAATCTCTCCTTGTCC	5	-	163716536-163716585	5q36	Rattus norvegicus tumor necrosis factor receptor superfamily, member 8 (Tnfrsf8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL, TNF-related apoptosis inducing ligand [goid 45556] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL, TNF-related apoptosis inducing ligand [goid 45556] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cd30	Cd30
Rattus norvegicus	RefSeq	GI_62651049	ILMN_282483	PTGR2	NM_001015009.1	NM_001015009.1		299194	62543512	NM_001015009.1	Ptgr2	NP_001015009.1	ILMN_1650501	0000940184	S	938	GCATTCCAATCCATGATGACAGGAGGCAACATAGGGAAGCAGATCGTCCG	6	+	108379007-108379056	6q31	Rattus norvegicus prostaglandin reductase 2 (Ptgr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprostanoate + NAD(P)+ = (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprosta-13-enoate + NAD(P)H + H+ [goid 47522] [evidence IEA]	MGC108784	MGC108784
Rattus norvegicus	RefSeq	GI_62660279-S	ILMN_278239	RASSF6	NM_001025671.1	NM_001025671.1		305251	71043681	NM_001025671.1	Rassf6	NP_001020842.1	ILMN_1354385	0001990176	S	1035	GAGTAAACGGGCAGCAAAAACGGAGACCACAGTCTAGAAGCGGCAGCTCC	14	+	18986859-18986895:18986896-18986908	14p22	Rattus norvegicus Ras association (RalGDS/AF-6) domain family member 6 (Rassf6), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576802-S	ILMN_263321	OLR827	NM_001000902.1	NM_001000902.1		405212	47576802	NM_001000902.1	Olr827	NP_001000902.1	ILMN_1355982	0004850647	S	278	TAGGGAGGCAAAAGATTCCCTTTGGGGCCTGCTTCTCACAGGCATTTGTC	4	+	152803868-152803917	4q42	Rattus norvegicus olfactory receptor 827 (Olr827), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr827	Olr827
Rattus norvegicus	RefSeq	GI_9507014-S	ILMN_296290	PITX3	NM_019247.1	NM_019247.1		29609	9507014	NM_019247.1	Pitx3	NP_062120.1	ILMN_1365753	0004850253	S	1007	GCAGTAATTCACAGCCTCTCTGGACAGGGGTCGCCTAGACTGGCTTGCCC	1	-	251355973-251356022	1q54	Rattus norvegicus paired-like homeodomain 3 (Pitx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642237-S	ILMN_54978	LOC294072	XM_220029.3	XM_220029.3		294072	109460097	XM_220029.3	LOC294072	XP_220029.2	ILMN_1373063	0004480008	S	945	CGTCGTCCTTTTTGTCATAGGAGAATGGAGTCTGCCGTACTGTGGGCGGG	1	+	242719675-242719724	1q53	PREDICTED: Rattus norvegicus similar to transmembrane protein 20 (LOC294072), mRNA.					
Rattus norvegicus	RefSeq	GI_62656315-S	ILMN_266491	CD68	XM_001079491.1	XM_001079491.1		287435	109491112	XM_001079491.1	Cd68	XP_001079491.1	ILMN_1366566	0005550711	S	1002	CCTTCTGCGTTACCCGGAGACGACAATCAACCTACCAGCCCCTCTGAGCA				10q24	PREDICTED: Rattus norvegicus CD68 antigen (Cd68), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47577814-S	ILMN_292183	OLR1222	NM_001000440.1	NM_001000440.1		300548	47577814	NM_001000440.1	Olr1222	NP_001000440.1	ILMN_1371212	0006100347	S	689	TGTCATCAGCTACAGGTTGGTCCAAAGCCATGGGTACTTGTGGTTCTCAC	8	+	40364759-40364808	8q22	Rattus norvegicus olfactory receptor 1222 (Olr1222), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-40372837-40373775_ORF; Olr1222	ratchr8-40372837-40373775_ORF; Olr1222
Rattus norvegicus	RefSeq	GI_62650568-S	ILMN_66228	CBLL1_PREDICTED	XM_234039.4	XM_234039.4		314028	109478112	XM_234039.4	Cbll1_predicted	XP_234039.4	ILMN_1365009	0003120537	S	1479	GCAGGGCCCACCTTCTCAAACCCCACTACCTGGACCACATCATCCAGATC	6	-	49355485-49355534	6q16	PREDICTED: Rattus norvegicus Casitas B-lineage lymphoma-like 1 (predicted) (Cbll1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865931-A	ILMN_286490	BBS7	NM_001012180.1	NM_001012180.1		361930	58865931	NM_001012180.1	Bbs7	NP_001012180.1	ILMN_1376558	0006450168	S	2380	GAGGGACCTCAGATGGATGTCTTTCCTGTGTGTAACCAGAAGAGTGATGG	2	-	123070538-123070587	2q25	Rattus norvegicus Bardet-Biedl syndrome 7 (Bbs7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A protein complex that associates with the primary cilium and is involved in cilium biogenesis; consists of seven conserved proteins: BBS1, BBS2, BBS4, BBS5, BBS7, BBS8 and BBS9 [goid 34464] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_23463314-S	ILMN_283495	CYP2D1	NM_153313.1	NM_153313.1		266684	23463314	NM_153313.1	Cyp2d1	NP_695225.1	ILMN_1363258	0001340010	S	1580	CTACAGGGCAAGCTGAGCCACGTTTAATAAACCAGTCTTTTGGCGCGCCT	7	-	120769694-120769743	7q34	Rattus norvegicus cytochrome P450, family 2, subfamily d, polypeptide 1 (Cyp2d1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	Cyp2d9; Cyp2d1	Cyp2d9; Cyp2d1
Rattus norvegicus	RefSeq	GI_62648618-S	ILMN_284584	RGD1564200_PREDICTED	XM_001063324.1	XM_001063324.1		366311	109476027	XM_001063324.1	RGD1564200_predicted	XP_001063324.1	ILMN_1365631	0005270463	S	690	TGATCGATGGATTCCCCGGAGTGTTGGAAAATCGTGACCACTACGGCAGG				5q13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC34646 (predicted), transcript variant 1 (RGD1564200_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506502-S	ILMN_300700	COLQ	NM_019274.1	NM_019274.1		29755	9506502	NM_019274.1	Colq	NP_062147.1	ILMN_1353156	0001500500	S	2580	GTGGCACCTTCTCACCCAGCAAGTCCGAGCTGTGAATGGTATTTCCTGAG				16p16	Rattus norvegicus collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase (Colq), mRNA.	A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence TAS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42135] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_32996706-S	ILMN_272302	AOX1	NM_019363.2	NM_019363.2		54349	32996706	NM_019363.2	Aox1	NP_062236.2	ILMN_1370454	0002360093	S	4067	CTGAAAGGATTGGCTCAACAACTACAGAACGCACCTCCCGGTCTCTCTGC	9	+	56774014-56774063	9q31	Rattus norvegicus aldehyde oxidase 1 (Aox1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an aldehyde + H2O + O2 = a carboxylic acid + H2O2 [goid 4031] [evidence IDA]; Catalysis of the reaction: an aldehyde + H2O + O2 = a carboxylic acid + H2O2 [goid 4031] [evidence ISS]; Catalysis of the reaction: an aldehyde + H2O + O2 = a carboxylic acid + H2O2 [goid 4031] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with molybdenum (Mo) ions [goid 30151] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394531-S	ILMN_282984	VIPR2	NM_017238.1	NM_017238.1		29555	8394531	NM_017238.1	Vipr2	NP_058934.1	ILMN_1353834	0005720711	S	3008	GCCCTCCCATATCTGAAAGTTGTCCTATCAACCACTAGGCGTGACCCTGC	6	+	143416328-143416377	6q33	Rattus norvegicus vasoactive intestinal peptide receptor 2 (Vipr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA];  [goid 4999] [evidence IDA];  [goid 4999] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666278-S	ILMN_66735	LOC361860	XM_347006.2	XM_347006.2		361860	62666278	XM_347006.2	LOC361860	XP_347007.2	ILMN_1354035	0003450288	S	642	GTACCTAGAGCCCCAGAGGTAGCCAGCCCGAGTGCGGTCATAAGAAGGAA					PREDICTED: Rattus norvegicus hypothetical LOC361860 (LOC361860), mRNA.					
Rattus norvegicus	RefSeq	GI_62656420	ILMN_65612	LOC501691	XM_577092.1	XM_577092.1		501691	62656420	XM_577092.1	LOC501691	XP_577092.1	ILMN_1650322	0005890398	S	697	TTGGAGCTGTGTGCTGTCACAAGGGAAGCCTGCTGTGAGGACAGTGACCC					PREDICTED: Rattus norvegicus similar to CDC42 small effector 2 (LOC501691), mRNA.					
Rattus norvegicus	RefSeq	GI_62655156-S	ILMN_69435	RGD1307151_PREDICTED	XM_237212.4	XM_237212.4		316455	109486208	XM_237212.4	RGD1307151_predicted	XP_237212.3	ILMN_1366405	0002060577	S	2401	GAGTGCAAAGAAAAGTCTGTCCCCTGCCCACGGTGTGTCCGACGGGAGCT	9	-	63442153-63442202	9q32	PREDICTED: Rattus norvegicus similar to CG6613-PA (predicted) (RGD1307151_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642859-S	ILMN_64610	LOC294668	XM_226700.3	XM_226700.3		294668	62642859	XM_226700.3	LOC294668	XP_226700.3	ILMN_1368839	0002850047	S	3527	GCGCTGTCTCACTTCTGGCCGGGAAAGAGCGACTTCGGGACAGTGCGTGT					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC294668), mRNA.					
Rattus norvegicus	RefSeq	GI_62667593-S	ILMN_48419	RGD1308750_PREDICTED	XM_215276.4	XM_215276.4		294066	109511373	XM_215276.4	RGD1308750_predicted	XP_215276.4	ILMN_1353655	0001850059	S	1354	CTGTACCTGCTGAGCCCCCGAAACTCCGCCCACTTGGTGCCAGAGATCAT	X	-	157318595-157318644	Xq37	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 19, Brigham & Womens Genetics 1357 expressed (predicted) (RGD1308750_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58219534-S	ILMN_268339	PIGV	NM_001010966.1	NM_001010966.1		366478	58219534	NM_001010966.1	Pigv	NP_001010966.1	ILMN_1371306	0004050722	S	2007	GCCTCTCATCCTGGGCGGGGTGAATTTAGGGGAGTAACTTCGCTGCTCAG	5	+	151416342-151416391	5q36	Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis, class V (Pigv), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane [goid 16254] [evidence ISS]	Catalysis of the transfer of a mannosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 30] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	RGD1309526	RGD1309526
Rattus norvegicus	RefSeq	GI_62638899-S	ILMN_293537	LOC499078	XM_001070660.1	XM_001070660.1		499078	109461163	XM_001070660.1	LOC499078	XP_001070660.1	ILMN_1372294	0006550433	S	1215	GGCAGCCATCATGAATCATGGGTCATCAGAAACTTCTTAGAATTTTGGGA					PREDICTED: Rattus norvegicus similar to glycoprotein 49b (LOC499078), mRNA.					
Rattus norvegicus	RefSeq	GI_62667152-S	ILMN_286433	RGD1565829_PREDICTED	XM_001063774.1	XM_001063774.1		317202	109512255	XM_001063774.1	RGD1565829_predicted	XP_001063774.1	ILMN_1352588	0000770592	S	1747	TCCCCAATCGTAAAGGAAGGGAATGGAAGCAGAAGTGGAGGTAGAGGCTC				Xq32	PREDICTED: Rattus norvegicus similar to cation-dependent mannose-6-phosphate receptor (predicted) (RGD1565829_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655129-S	ILMN_67687	CARF_PREDICTED	XM_217411.4	XM_217411.4		301446	109486143	XM_217411.4	Carf_predicted	XP_217411.4	ILMN_1371781	0006840671	S	1854	GGGAGATGCACACACCATTCCAATACACATCCTAGACAGCCATCCAGCTC	9	+	58686762-58686811	9q31	PREDICTED: Rattus norvegicus calcium response factor (predicted) (Carf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090354-A	ILMN_269977	KLHDC8B	NM_001007685.1	NM_001007685.1		306589	56090354	NM_001007685.1	Klhdc8b	NP_001007686.1	ILMN_1376722	0006520519	S	1425	GGGCACCTGAGTTACTGCCTTAGGGACTTGCATTGGGGAGCCCTTGTCAT	16|NW_047483.1	-	232123-232172		Rattus norvegicus kelch domain containing 8B (Klhdc8b), mRNA.					
Rattus norvegicus	RefSeq	GI_55741523-S	ILMN_294082	TUBA4A	NM_001007004.1	NM_001007004.1		316531	55741523	NM_001007004.1	Tuba4a	NP_001007005.1	ILMN_1364250	0001850731	S	1350	CCTATGAGGACGAGGATGAGGGAGAAGAATAGACAGCTACTTGGAGCCCT	9	-	74496557-74496575:74496576-74496606	9q33	Rattus norvegicus tubulin, alpha 4A (Tuba4a), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Tuba4; MGC94628	Tuba4; MGC94628
Rattus norvegicus	RefSeq	GI_62661021-S	ILMN_266047	RGD1561064_PREDICTED	XM_001064588.1	XM_001064588.1		498440	109502127	XM_001064588.1	RGD1561064_predicted	XP_001064588.1	ILMN_1366696	0001850204	S	1012	CCCTTTCTGGTTCCAATTTGAGAGGGGACGCTGGACAGGATGCCCCAACT				15p16	PREDICTED: Rattus norvegicus similar to myozenin 1 (predicted) (RGD1561064_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655283-S	ILMN_54642	LOC363265	XM_343607.3	XM_343607.3		363265	109486285	XM_343607.3	LOC363265	XP_343608.3	ILMN_1357065	0000870139	S	4673	TAGCTGTTCACAGTCAAACTACTGCTATCCCCCCATGTCCCCAGGGCTGG	9	+	82034681-82034730	9q34	PREDICTED: Rattus norvegicus similar to procollagen, type IV, alpha 3 (LOC363265), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]		The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506826-S	ILMN_54858	KCNA3	NM_019270.2	NM_019270.2		29731	77404425	NM_019270.2	Kcna3	NP_062143.2	ILMN_1358534	0002320026	S	1437	CGGAGTATATGGTGATCGAAGAGGGGGGTATGAACCACAGCGCCTTCCCC	2	+	202474067-202474116	2q34	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 3 (Kcna3), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence TAS]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA];  [goid 5251] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15271] [evidence IMP]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658009-S	ILMN_279975	RGD1306346_PREDICTED	XM_001073045.1	XM_001073045.1		303878	109494522	XM_001073045.1	RGD1306346_predicted	XP_001073045.1	ILMN_1369503	0006900619	S	1508	GTACAGGAAAGAAATTAACACCATGGCCTGACCTCTCTCAGCTTACCCCC				11q22	PREDICTED: Rattus norvegicus similar to KIAA0794 protein (predicted) (RGD1306346_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664044	ILMN_52914	LOC361292	XM_341577.2	XM_341577.2		361292	62664044	XM_341577.2	LOC361292	XP_341578.2	ILMN_1650542	0001780451	S	1830	CAGGGCCACACTAAATGCAGAGGACCAATGGGCACCAACGGCTAAACTGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6030446N20 gene (LOC361292), mRNA.					
Rattus norvegicus	RefSeq	GI_62639182-S	ILMN_275000	RGD1566122_PREDICTED	XM_001070194.1	XM_001070194.1		308443	109461423	XM_001070194.1	RGD1566122_predicted	XP_001070194.1	ILMN_1359769	0002970427	S	391	CAGGGGACATGGCTTACTGGTCCCACCCCATTGACCTGCACTTTGCTACA				1q21	PREDICTED: Rattus norvegicus similar to CDNA sequence BC028440 (predicted) (RGD1566122_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662457-S	ILMN_274008	RGD1308759_PREDICTED	XM_001069582.1	XM_001069582.1		290668	109503981	XM_001069582.1	RGD1308759_predicted	XP_001069582.1	ILMN_1359938	0003440019	S	2391	CAGCTATTTGGCTTCCCCACGGAGGACAGTTATGGGACCAGCTCGGCTCT				16p14	PREDICTED: Rattus norvegicus similar to KIAA0892 protein (predicted) (RGD1308759_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667614-S	ILMN_49395	LOC367976	XM_346381.2	XM_346381.2		367976	62667614	XM_346381.2	LOC367976	XP_346382.2	ILMN_1370183	0003840692	S	1957	AGATGAGGTCGGGGGCTTCCTCAGTGCTGGTATTAGACGTGTGCTCCACC					PREDICTED: Rattus norvegicus similar to DNA replication licensing factor MCM3 (DNA polymerase alpha holoenzyme-associated protein P1) (P1-MCM3) (LOC367976), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650621-S	ILMN_68895	RGD1565406_PREDICTED	XM_216693.4	XM_216693.4		298959	109478142	XM_216693.4	RGD1565406_predicted	XP_216693.4	ILMN_1364298	0006840064	S	459	CCCCTGATGGGCAGTACGTGCCAAGGATCATGTTTGTTGACCCTTCTTTG	6	+	54650736-54650774:54651200-54651210	6q16	PREDICTED: Rattus norvegicus similar to LRRGT00057 (predicted) (RGD1565406_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651454-S	ILMN_291321	GOLGA5	NM_001033065.1	NM_001033065.1		299258	74271912	NM_001033065.1	Golga5	NP_001028237.1	ILMN_1370628	0003140167	S	1911	CATGTCTGGAGTTGACAGTGGTGAAGGGACACGCCTGCGAAATGTTCCTG	6	+	126760003-126760031:126761648-126761668	6q32	Rattus norvegicus golgi autoantigen, golgin subfamily a, 5 (Golga5), mRNA.	The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER [goid 137] [evidence IDA]; The Golgi cisterna farthest from the endoplasmic reticulum; the final processing compartment through which proteins pass before exiting the Golgi apparatus; the compartment in which N-linked protein glycosylation is completed [goid 138] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The lipid bilayer surrounding a COPI-coated vesicle [goid 30663] [evidence IDA]; Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex [goid 31985] [evidence IEA]; Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex [goid 31985] [evidence ISS]	The retrograde movement of substances within the Golgi, mediated by COP I vesicles. Cis-Golgi vesicles are constantly moving forward through the Golgi stack by cisternal progression, eventually becoming trans-Golgi vesicles. They then selectively transport membrane and luminal proteins from the trans- to the medial-Golgi while leaving others behind in the trans-Golgi cisternae; similarly, they selectively move proteins from the medial- to the cis-Golgi [goid 301] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence ISS]; The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles [goid 48193] [evidence ISS]; The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles [goid 48193] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IDA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Ret-II	Ret-II
Rattus norvegicus	RefSeq	GI_62643179	ILMN_269059	FBXL7_PREDICTED	XM_001064103.1	XM_001064103.1		361907	109466244	XM_001064103.1	Fbxl7_predicted	XP_001064103.1	ILMN_1651056	0002760524	S	1908	TCCAGGACTGTGAAGTTTCGGTAGAGGCCCTGCGGTTTGTGAAGCGCCAT				2q22	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 7 (predicted) (Fbxl7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34858190-S	ILMN_285191	RGD1565369_PREDICTED	XM_227351.2	XM_227351.2		310596	34858190	XM_227351.2	RGD1565369_predicted	XP_227351.2	ILMN_1363105	0002690270	S	883	ACTCTTATCCTGGCAGACCTCCACAGCGCAGAGCACCTGAAGTCTATGGC	2	+	187084071-187084120	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1565369_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647893-S	ILMN_265669	LOC500277	XR_006679.1	XR_006679.1		500277	109472446	XR_006679.1	LOC500277		ILMN_1359389	0001580156	S	345	CCAGCCCATCACCCCCGTTCTTTATTGCTTCTGGTTTGGAGCTCTGGGAC	4	-	139794050-139794099	4q41	PREDICTED: Rattus norvegicus similar to Ras-GTPase-activating protein binding protein 1 (ATP-dependent DNA helicase VIII) (GAP SH3-domain binding protein 1) (G3BP-1) (HDH-VIII) (LOC500277), mRNA.					
Rattus norvegicus	RefSeq	GI_62659362-S	ILMN_276568	IPO9_PREDICTED	XM_001063316.1	XM_001063316.1		304817	109498677	XM_001063316.1	Ipo9_predicted	XP_001063316.1	ILMN_1353713	0002470132	S	3606	TGCTTTCTGCCCTCGGCCAGTGATGCTCTCGGTTTTCAGTAAGAAGCTGG				13q13	PREDICTED: Rattus norvegicus importin 9 (predicted) (Ipo9_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.18917	ILMN_276568	IPO9_PREDICTED	XM_001063316.1	XM_001063316.1		304817	109498677	XM_001063316.1	Ipo9_predicted	XP_001063316.1	ILMN_1530452	0006860156	S	2960	TTTTATCTGACATTCTTGCTACAAGTAAATATGAGGAGGATTACTATGAA				13q13	PREDICTED: Rattus norvegicus importin 9 (predicted) (Ipo9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658568	ILMN_279869	ZKSCAN1	NM_001025760.1	NM_001025760.1		498160	71043789	NM_001025760.1	Zkscan1	NP_001020931.1	ILMN_1650096	0005910110	S	2463	TGGAGAGCCCTGCACTCATCAGTGAGATCAGTCCTACCTGCGGGAATAGC	12	+	17546105-17546154	12q11	Rattus norvegicus zinc finger with KRAB and SCAN domains 1 (Zkscan1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078644-S	ILMN_295336	WDR45	NM_001013958.1	NM_001013958.1		302559	62078644	NM_001013958.1	Wdr45	NP_001013980.1	ILMN_1350497	0002760068	S	1206	CAGCCAACATCCCCCCAAGCACTTTTGTGACTGCGTGCTAAAGGCCAAGG	X	-	26816742-26816791	Xq13	Rattus norvegicus WD repeat domain 45 (Wdr45), mRNA.					
Rattus norvegicus	RefSeq	GI_31415867-S	ILMN_272535	MAFB	NM_019316.1	NM_019316.1		54264	31415867	NM_019316.1	Mafb	NP_062189.1	ILMN_1361027	0005220465	S	1495	ATGGTGAACACTGGCTCTCAGCCGGAGACGCGGGCCTCAGTTAGGACTTT	3	-	151117207-151117256	3q42	Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) (Mafb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whereby segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes [goid 7379] [evidence ISS]; The process whereby segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes [goid 7379] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process whose specific outcome is the progression of rhombomere 5 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21571] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 6 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21572] [evidence ISS]; Division of the brain into a series of semi-repetitive parts or segments [goid 35284] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Krml; b-maf	Krml; b-maf
Rattus norvegicus	RefSeq	GI_28849874-I	ILMN_299257	SEPT9	NM_176856.1	NM_176856.1		83788	28849874	NM_176856.1	Sept9	NP_789826.1	ILMN_1375516	0002650019	I	801	CCGGAGGACGGAAATCACCATTGTCAAGCCTCAAGAGTCAGGGCTCCGCA	10	+	107401976-107402025	10q32.3	Rattus norvegicus septin 9 (Sept9), transcript variant 2, mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2 [goid 3918] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Slpa; Msf; Eseptin	Slpa; Msf; Eseptin
Rattus norvegicus	RefSeq	GI_56090370-S	ILMN_272558	RGD1359600	NM_001007688.1	NM_001007688.1		307343	56090370	NM_001007688.1	RGD1359600	NP_001007689.1	ILMN_1365223	0000060301	S	1239	GCTTCATGTTCTCTGACATCTGCAGTAAGTGTGTGCTGGTCAGTCCACTC	18	+	64743850-64743899	18q12.1	Rattus norvegicus LEA_4 domain containing protein RGD1359600 (RGD1359600), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94550	MGC94550
Rattus norvegicus	RefSeq	GI_25742697-S	ILMN_275770	TACSTD1	NM_138541.1	NM_138541.1		171577	25742697	NM_138541.1	Tacstd1	NP_612550.1	ILMN_1360221	0002970528	S	1221	CGAGTGTCTTACACATGCAGGTCTGGCGTGGAACTCAGAACTTAGCCTGC	6	+	11192389-11192438	6q12	Rattus norvegicus tumor-associated calcium signal transducer 1 (Tacstd1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]			Egp314	Egp314
Rattus norvegicus	RefSeq	GI_62666560-S	ILMN_295380	RGD1565634_PREDICTED	XR_007537.1	XR_007537.1		367715	109511475	XR_007537.1	RGD1565634_predicted		ILMN_1358645	0005220398	S	315	GTGCAAGGTGCTGCAGCCACTACGTCCTCAGCAGATCTTCAATGGCACCT				Xq12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (predicted) (RGD1565634_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13994120-S	ILMN_299431	FEZ1	NM_031066.1	NM_031066.1		81730	13994120	NM_031066.1	Fez1	NP_112328.1	ILMN_1355043	0001580398	S	1475	GCGCACGCGCGGGGTCCTTTGCTGTTGGCTTCTAGTGCTAGTAATCATTG	8	+	38123775-38123824	8q21	Rattus norvegicus fasciculation and elongation protein zeta 1 (zygin I) (Fez1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence TAS]	Interacting selectively with protein kinase C [goid 5080] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence ISS]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]	MGC105385	MGC105385
Rattus norvegicus	RefSeq	GI_62645332-S	ILMN_53638	FRZB	XM_215757.4	XM_215757.4		295691	109468351	XM_215757.4	Frzb	XP_215757.4	ILMN_1366268	0002650603	S	2392	AGCCATTGCACATCCAAGTCGAACTAGATGAGTAGACTAGGCTCATGGCC	3	-	63350801-63350850	3q24	PREDICTED: Rattus norvegicus frizzled-related protein (Frzb), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with Wnt-protein, a secreted growth factor involved in signaling [goid 17147] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34854479-S	ILMN_287572	LOC684139	XM_001069100.1	XM_001069100.1		684139	109461095	XM_001069100.1	LOC684139	XP_001069100.1	ILMN_1349793	0002350400	S	328	TCCATCCTAGAGCAAGGTAATGAGCCCTGGGTACAGGAAAGGGCCACAGC					PREDICTED: Rattus norvegicus similar to zinc finger protein 582 (LOC684139), mRNA.					
Rattus norvegicus	RefSeq	GI_55741461-S	ILMN_286419	NAMPT	NM_177928.3	NM_177928.3		297508	55741461	NM_177928.3	Nampt	NP_808789.1	ILMN_1363917	0003870541	S	2246	TCCCGAAGGCCTGTTCTGCGATTTTATATGTCGGATATTGCCTGTGGCTC	6	+	51166346-51166395	6q16	Rattus norvegicus nicotinamide phosphoribosyltransferase (Nampt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IPI]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base [goid 19363] [evidence IEA]	Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Catalysis of the reaction: pyrophosphate + nicotinamide nucleotide = PRPP + niacinamide [goid 47280] [evidence ISS]; Catalysis of the reaction: pyrophosphate + nicotinamide nucleotide = PRPP + niacinamide [goid 47280] [evidence IDA]; Catalysis of the reaction: pyrophosphate + nicotinamide nucleotide = PRPP + niacinamide [goid 47280] [evidence IEA]; Catalysis of the reaction: pyrophosphate + nicotinamide nucleotide = PRPP + niacinamide [goid 47280] [evidence ISS]	Pbef	Pbef
Rattus norvegicus	RefSeq	GI_47577658-S	ILMN_290387	OLR646	NM_001000642.1	NM_001000642.1		404835	47577658	NM_001000642.1	Olr646	NP_001000642.1	ILMN_1359250	0000460692	S	408	TAACGTGTGCTGCTTGATGGTAGGAGGGGCTTGGGTAGGAGGATCTATGC	3	+	72635967-72636016	3q24	Rattus norvegicus olfactory receptor 646 (Olr646), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr646	Olr646
Rattus norvegicus	RefSeq	GI_54312109-S	ILMN_69649	ZD10A	NM_001005895.1	NM_001005895.1		450221	54312109	NM_001005895.1	Zd10A	NP_001005895.1	ILMN_1354324	0001170687	S	606	GGCTCTTCAAACAGGAAAAGTGATTGAGCAGATGGGCAAATTTTACCCTG					Rattus norvegicus zinc responsive protein Zd10A (Zd10A), mRNA.					
Rattus norvegicus	RefSeq	GI_62662463-S	ILMN_277393	RGD1563236_PREDICTED	XM_001071564.1	XM_001071564.1		498608	109504018	XM_001071564.1	RGD1563236_predicted	XP_001071564.1	ILMN_1369195	0003360707	S	656	ACCACTTTGTAGCCGGCAGGTTCGTGCCTGACGACGTGCGCCGAAAGTTT				16p14	PREDICTED: Rattus norvegicus similar to BC028663 protein (predicted) (RGD1563236_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656384-S	ILMN_292679	NOXO1_PREDICTED	XM_001056507.1	XM_001056507.1		302976	109490335	XM_001056507.1	Noxo1_predicted	XP_001056507.1	ILMN_1368197	0001090170	S	922	GTGACTGAGGGCAGGACTGTTCCCCCTGTAGTACCAACTCGCCCCTGTAT				10q12	PREDICTED: Rattus norvegicus NADPH oxidase organizer 1 (predicted) (Noxo1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660439-S	ILMN_47948	LOC498359	XM_579818.1	XM_579818.1		498359	62660439	XM_579818.1	LOC498359	XP_579818.1	ILMN_1351706	0005340520	S	410	TGCTGGGCTCTCAGGTACTCAGTTGAAGAGTAAGGACAAGGCCACTCTGG					PREDICTED: Rattus norvegicus LOC498359 (LOC498359), mRNA.					
Rattus norvegicus	RefSeq	GI_62642952-S	ILMN_69490	RGD1562550_PREDICTED	XM_574856.2	XM_574856.2		499532	109464420	XM_574856.2	RGD1562550_predicted	XP_574856.2	ILMN_1354462	0006510020	S	802	ATGCACTTGTTCAAGCTCAGGGACTCGTGGCGCTTTCTCCCGTGGATGAT	2	+	51673900-51673949	2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21657 (predicted) (RGD1562550_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.1712	ILMN_161229	RN.1712	Rn.1712		Rn.1712		41113763	CK600604			ILMN_1530281	0003870093	S	666	TTAGACTCTGGAAAGATCTCAGTCCTTCTGACACAACTTGGAGCATAGTA					AGENCOURT_17894900 NIH_MGC_234 Rattus norvegicus cDNA clone IMAGE:7190293 5', mRNA					
Rattus norvegicus	RefSeq	GI_62659417-S	ILMN_69710	LOC498239	XM_573462.1	XM_573462.1		498239	62659417	XM_573462.1	LOC498239	XP_573462.1	ILMN_1353259	0006110546	S	1336	CCAGGTAATAGCAGATTCATCTTTGTCGCCTCGGGGCCTAGGAGGGGAGC					PREDICTED: Rattus norvegicus similar to CDNA sequence BC042698 (LOC498239), mRNA.					
Rattus norvegicus	RefSeq	GI_47575992-S	ILMN_291546	OLR1455	NM_001000771.1	NM_001000771.1		405046	47575992	NM_001000771.1	Olr1455	NP_001000771.1	ILMN_1363614	0002370026	S	780	GAGACCCAGGTCCCACCAGCCAGGCAAGAGCGACAAAGTGGTGTCTGCCT	10	+	44998360-44998409	10q22	Rattus norvegicus olfactory receptor 1455 (Olr1455), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1455	Olr1455
Rattus norvegicus	RefSeq	GI_62657195-S	ILMN_48563	TLK2_PREDICTED	XM_221023.4	XM_221023.4		303592	109489159	XM_221023.4	Tlk2_predicted	XP_221023.3	ILMN_1356063	0004780497	S	3317	GTTAGTGTGCTAGCCCCGAGTAAGCTCAGTCTCTAAAACGTGCAGCTCCC	10	+	94675252-94675301	10q32.1	PREDICTED: Rattus norvegicus tousled-like kinase 2 (Arabidopsis) (predicted) (Tlk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666016-S	ILMN_275358	MAN1A	NM_001033656.1	NM_001033656.1		294410	75905482	NM_001033656.1	Man1a	NP_001028828.1	ILMN_1353070	0005080717	S	3450	CAGATCGGAAAAAGGGCCCGTCCCAGGTACAGCTCGTCAATGTACTTCAG	20	-	32582864-32582913	20q11	Rattus norvegicus mannosidase 1, alpha (Man1a), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2) [goid 4571] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Aa2-166; Man1a	Aa2-166; Man1a
Rattus norvegicus	RefSeq	GI_62652937-S	ILMN_48717	ARSA_PREDICTED	XM_235566.3	XM_235566.3		315222	62652937	XM_235566.3	Arsa_predicted	XP_235566.2	ILMN_1363907	0004540040	S	1183	CAAGGCTCATTTCTTTACCCAGGGCTCCGCCCACAGTGACACCACTCCAG				7q34	PREDICTED: Rattus norvegicus arylsulfatase A (predicted) (Arsa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650798-S	ILMN_272816	DAAM1_PREDICTED	XM_001080564.1	XM_001080564.1		314212	109479497	XM_001080564.1	Daam1_predicted	XP_001080564.1	ILMN_1365769	0002510647	S	3333	GGGAGAGGGAGCGGAAGATGAGGAAGGCCAAGGAGAGCAGTGAAGAGAGT				6q24	PREDICTED: Rattus norvegicus dishevelled associated activator of morphogenesis 1 (predicted) (Daam1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659999-S	ILMN_62080	LOC498313	XM_579811.1	XM_579811.1		498313	62659999	XM_579811.1	LOC498313	XP_579811.1	ILMN_1356876	0006380152	S	708	GAGCTCTCTCCCCAAGGACCTCAGCACCAGGACAGGCGCCAACATGGAAA					PREDICTED: Rattus norvegicus LOC498313 (LOC498313), mRNA.					
Rattus norvegicus	RefSeq	GI_11024665-S	ILMN_295865	NTRK1	NM_021589.1	NM_021589.1		59109	11024665	NM_021589.1	Ntrk1	NP_067600.1	ILMN_1370831	0000630161	S	2486	GGCTCCCTCAGCGCCCAGCAGCTATCACACTCAAGTCTTACCCTCAGCAT	2	-	179838827-179838876	2q34	Rattus norvegicus neurotrophic tyrosine kinase, receptor, type 1 (Ntrk1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11784714] [evidence EXP]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11248116] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 7970708] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 10908605] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 11007890] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 15167895] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 9560161] [evidence EXP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16284401] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Trk	Trk
Rattus norvegicus	RefSeq	GI_62649933-S	ILMN_54905	RGD1310117_PREDICTED	XM_216568.4	XM_216568.4		298591	109475732	XM_216568.4	RGD1310117_predicted	XP_216568.4	ILMN_1359367	0000060494	S	303	GCTCACCCTGGTGCTTGCCCTGACAGTGATCCTGGAGCTGACGTGAAGAT	5	-	158819728-158819732:158819733-158819777	5q36	PREDICTED: Rattus norvegicus hypothetical LOC298591 (predicted) (RGD1310117_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665224-S	ILMN_268224	PSMD7_PREDICTED	XM_001076658.1	XM_001076658.1		307821	109508851	XM_001076658.1	Psmd7_predicted	XP_001076658.1	ILMN_1374653	0003140673	S	1468	CCGACCCCCCTGAACACCAGACCACAGCACATTTTGGACCTGTAACTCGC				19q12	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (predicted) (Psmd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18034784-S	ILMN_282641	ABCB6	NM_080582.1	NM_080582.1		140669	18034784	NM_080582.1	Abcb6	NP_542149.1	ILMN_1355792	0006590484	S	2567	AGAGGAAGGCACGAAGCCCTGCTATCCCGAGGTGGCGTGTATGCTGAGAT	9	-	74455031-74455073:74455196-74455202	9q33	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Abcb6), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	MGC93242	MGC93242
Rattus norvegicus	RefSeq	GI_27716090-S	ILMN_59019	RGD1309802_PREDICTED	XM_233480.3	XM_233480.3		313563	109475429	XM_233480.3	RGD1309802_predicted	XP_233480.1	ILMN_2040884	0005900523	S	999	AGGCGTTGATGTGGAAGAGGCATGGAAGTGTCGGACCTGTGACTATGTGG	5	-	141508106-141508155	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110037I16 (predicted) (RGD1309802_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649572-S	ILMN_59019	RGD1309802_PREDICTED	XM_233480.3	XM_233480.3		313563	109475429	XM_233480.3	RGD1309802_predicted	XP_233480.1	ILMN_2038944	0006200671	S	1001	GCGTTGATGTGGAAGAGGCATGGAAGTGTCGGACCTGTGACTATGTGGAC	5	-	141508104-141508153	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110037I16 (predicted) (RGD1309802_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653603-S	ILMN_292829	RGD1561243_PREDICTED	XM_001064241.1	XM_001064241.1		363055	109484605	XM_001064241.1	RGD1561243_predicted	XP_001064241.1	ILMN_1374918	0004810097	S	5034	TGCCATGGGACTTGGCTATGCTGGGCCCGTGCCTCTTTCTGATACCTCAG				8q22	PREDICTED: Rattus norvegicus similar to KIAA1052 protein (predicted) (RGD1561243_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650820-S	ILMN_56120	RGD1559456_PREDICTED	XM_576051.2	XM_576051.2		500673	109478268	XM_576051.2	RGD1559456_predicted	XP_576051.2	ILMN_1372321	0000130176	S	1775	CTCTGAAGACACCTGAATCTGTGGAGAAAATGCAGTTCCCTAAAAGCCCC	6	-	95313311-95313360	6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930447C04 (predicted) (RGD1559456_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465528-S	ILMN_284754	SLC9A4	NM_173098.1	NM_173098.1		24785	27465528	NM_173098.1	Slc9a4	NP_775121.1	ILMN_1370021	0002340288	S	2548	CATGGTGGAGAAGATTTGGGGACCTGGGGGCCAAGAGACACAGCCAAGGC	9	+	39772734-39772783	9q21	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 4 (Slc9a4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]	Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Nhe4	Nhe4
Rattus norvegicus	RefSeq	GI_6978512-S	ILMN_277693	APEH	NM_012500.1	NM_012500.1		24206	6978512	NM_012500.1	Apeh	NP_036632.1	ILMN_1362585	0006110280	S	2179	GGCTGCACACACACTTGGGCAGCTGAAGCCCTATGTTCTTCTTGAGCTGG	8	-	113353283-113353307:113353308-113353332	8q32	Rattus norvegicus N-acylaminoacyl-peptide hydrolase (Apeh), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54400723-S	ILMN_268861	GFPT1	NM_001005879.1	NM_001005879.1		297417	54400723	NM_001005879.1	Gfpt1	NP_001005879.1	ILMN_1369505	0000630273	S	1872	GATCATCATGCGAGACCACACTTACGCCAAGTGCCAGAATGCTCTTCAGC	4	+	121248176-121248225	4q34	Rattus norvegicus glutamine fructose-6-phosphate transaminase 1 (Gfpt1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways resulting in the formation of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin [goid 6042] [evidence IDA]; The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate [goid 6047] [evidence IMP]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus [goid 9744] [evidence IEP]; The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y [goid 16051] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 45719] [evidence IMP]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence IDA]	Catalysis of the reaction: L-glutamine + D-fructose 6-phosphate = L-glutamate + D-glucosamine 6-phosphate [goid 4360] [evidence IEA]; Catalysis of the reaction: L-glutamine + D-fructose 6-phosphate = L-glutamate + D-glucosamine 6-phosphate [goid 4360] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	GFA; Gfpt; GFAT1; GFAT1m; GFAT; MGC95214	GFA; Gfpt; GFAT1; GFAT1m; GFAT; MGC95214
Rattus norvegicus	RefSeq	GI_62658882-S	ILMN_292933	RAD9B	NM_001030042.1	NM_001030042.1		363924	71795628	NM_001030042.1	Rad9b	NP_001025213.1	ILMN_1364902	0001660059	S	1298	CTTGGGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGAT	12	+	35443282-35443331	12q16	Rattus norvegicus RAD9 homolog B (S. cerevisiae) (Rad9b), mRNA.		The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124758	MGC124758
Rattus norvegicus	RefSeq	GI_62644129-S	ILMN_60602	LOC499684	XM_580005.1	XM_580005.1		499684	62644129	XM_580005.1	LOC499684	XP_580005.1	ILMN_1372053	0006370092	S	471	CTTGTCCTCTGCGTCCCCCACTGAGATGATTGCCGTTTGACACCAGTGAC					PREDICTED: Rattus norvegicus LOC499684 (LOC499684), mRNA.					
Rattus norvegicus	RefSeq	GI_62078538-S	ILMN_269371	RGD1305592	NM_001013901.1	NM_001013901.1		293500	62078538	NM_001013901.1	RGD1305592	NP_001013923.1	ILMN_1359426	0001990139	S	1376	CCCAGGCTCTTGTAACAGAAAAAGCCTCAAGCTCCCAGCGCAGTGCCTTG	1	-	186193310-186193359	1q36	Rattus norvegicus similar to RIKEN cDNA 2900092E17 (RGD1305592), mRNA.					
Rattus norvegicus	RefSeq	GI_62658880-S	ILMN_53076	ARPC3_PREDICTED	XM_213782.4	XM_213782.4		288669	109495910	XM_213782.4	Arpc3_predicted	XP_213782.2	ILMN_1350976	0002230092	S	471	CGCCATTTACGCCAAACCTGCCAGCAAACAGGAGGATGAAACGATGCGCG	12	-	35368025-35368037:35369057-35369093	12q16	PREDICTED: Rattus norvegicus actin related protein 2/3 complex, subunit 3 (predicted) (Arpc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646931-S	ILMN_65320	LOC500058	XM_575413.1	XM_575413.1		500058	62646931	XM_575413.1	LOC500058	XP_575413.1	ILMN_1353423	0002850398	S	3100	CTTCTTTCAGGGCATTTGGACAGTAAGCTGGGGCCTGCGTGGGTACAAGG					PREDICTED: Rattus norvegicus similar to GRIP and coiled-coil domain-containing protein 1 (Golgi coiled coil protein 1) (LOC500058), mRNA.					
Rattus norvegicus	RefSeq	GI_47576192-S	ILMN_283973	OLR1347	NM_001001121.1	NM_001001121.1		406024	47576192	NM_001001121.1	Olr1347	NP_001001121.1	ILMN_1368489	0001780519	S	73	GGGGGAAGTGCAGAGACCCAAGTTCTGCTATTTGCTGTGTTCCTGTCCCT	9	+	91779515-91779564	9q36	Rattus norvegicus olfactory receptor 1347 (Olr1347), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654422-S	ILMN_56128	LOC501066	XM_580158.1	XM_580158.1		501066	62654422	XM_580158.1	LOC501066	XP_580158.1	ILMN_1368241	0006770079	S	344	CAGACTGAGCCAATAGGAAGCCTCTACCCTGGATCCCAGTCTACTTGCTC					PREDICTED: Rattus norvegicus LOC501066 (LOC501066), mRNA.					
Rattus norvegicus	RefSeq	GI_62649525-S	ILMN_56401	LOC500536	XM_575897.1	XM_575897.1		500536	62649525	XM_575897.1	LOC500536	XP_575897.1	ILMN_1363545	0002570670	S	278	CCACTGGCAGGTCATGGATGGGAATCTGACTGGAAACATCAGGGAGTTCC				5q36	PREDICTED: Rattus norvegicus similar to novel protein (HT036) (LOC500536), mRNA.					
Rattus norvegicus	RefSeq	GI_62656909-S	ILMN_54380	OSBPL7_PREDICTED	XM_220915.4	XM_220915.4		303497	109488857	XM_220915.4	Osbpl7_predicted	XP_220915.4	ILMN_1358310	0004280091	S	2441	AAGAGGACGCTGCCTTCCACTGACACACGGCTACGGCCTGACCAGAGATA	10	+	85788116-85788162:85788278-85788280	10q31	PREDICTED: Rattus norvegicus oxysterol binding protein-like 7 (predicted) (Osbpl7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655260-S	ILMN_52986	RGD1565739_PREDICTED	XM_237343.4	XM_237343.4		301543	109486202	XM_237343.4	RGD1565739_predicted	XP_237343.4	ILMN_1374559	0001990014	S	695	CTTGTGCTACAATTACCCTGTGTCCGACTACTACAGCCCGACCAGAGCGG	9	+	77798694-77798743	9q33	PREDICTED: Rattus norvegicus similar to Sphingosine-1-phosphate phosphotase 2 (predicted) (RGD1565739_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47058987-S	ILMN_269835	TOMM70A	NM_212519.1	NM_212519.1		304017	47058987	NM_212519.1	Tomm70a	NP_997684.1	ILMN_1362445	0005130692	S	1746	GATGGCTCATCTGTACTCACTTTGTGATGCTGCCCATGCCCAGACAGAAG	11	-	44302866-44302915	11q12	Rattus norvegicus translocase of outer mitochondrial membrane 70 homolog A (Tomm70a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence TAS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	TOM70; MGC112570	TOM70; MGC112570
Rattus norvegicus	RefSeq	GI_62645528-S	ILMN_283591	RGD1566059_PREDICTED	XM_001080280.1	XM_001080280.1		499858	109470495	XM_001080280.1	RGD1566059_predicted	XP_001080280.1	ILMN_1371738	0003170711	S	509	GGGGAATTGGCTTCTTACACGCAGTGATCCAGTTGTCCTTTGCAGTGAGC				3q34	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr1289 (predicted) (RGD1566059_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162311-S	ILMN_272340	LCN5	NM_024136.1	NM_024136.1		29552	13162311	NM_024136.1	Lcn5	NP_077050.1	ILMN_1353695	0002100121	S	300	AAGGTTACAGCTACTGAGGGGGATGGTCCGGCGAAGTTTCAGGTCACCAG	3	+	3827499-3827548	3p13	Rattus norvegicus lipocalin 5 (Lcn5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11177911-S	ILMN_262806	BATF3	NM_021865.1	NM_021865.1		60462	11177911	NM_021865.1	Batf3	NP_068637.1	ILMN_1359391	0004780722	S	271	CACGAGAAGATGTGCCCGCTGCTGCTCTGCCCGATGAACTTTGTGCAGCT	13	+	107140062-107140111	13q27	Rattus norvegicus basic leucine zipper transcription factor, ATF-like 3 (Batf3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_57527111-S	ILMN_290685	WBP11	NM_001009661.1	NM_001009661.1		297695	57527111	NM_001009661.1	Wbp11	NP_001009661.1	ILMN_1371715	0003440465	S	2033	AGTGCAGGCTTCTCCTCAGAGGACTGGTTTGTGGAACAAGAGGCTCTCGT	4	-	173824352-173824401	4q43	Rattus norvegicus WW domain binding protein 11 (Wbp11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme protein phosphatase type 1 [goid 8599] [evidence ISS]	MGC94547	MGC94547
Rattus norvegicus	RefSeq	GI_62643692-S	ILMN_60145	SFRP2	XM_227314.4	XM_227314.4		310552	109464980	XM_227314.4	Sfrp2	XP_227314.1	ILMN_1369218	0006550184	S	1443	CCGAGGGGCATTTTCTCTCTTTGGTCAGTCTGTTGGTTTATACTGTGCCC	2	+	175486320-175486369	2q34	PREDICTED: Rattus norvegicus secreted frizzled-related protein 2 (Sfrp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654711-S	ILMN_48558	XPO5_PREDICTED	XM_343534.3	XM_343534.3		363194	109485800	XM_343534.3	Xpo5_predicted	XP_343535.3	ILMN_1358068	0003290458	S	3720	AACCAATGCTGGAGACAGAAGTGCTGGACAGTGAGGAGGGTGGACTGGCC	9	-	10304013-10304062	9q12	PREDICTED: Rattus norvegicus exportin 5 (predicted) (Xpo5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018315-S	ILMN_274507	PRKAB2	NM_022627.1	NM_022627.1		64562	12018315	NM_022627.1	Prkab2	NP_072149.1	ILMN_1353868	0003450017	S	1494	GAGCCTGAGGTGCCAGGGTCTCCTTTTTAGCTCAGTGAAGGCCTAACCCT	2	+	192510366-192510415	2q34	Rattus norvegicus protein kinase, AMP-activated, beta 2 non-catalytic subunit (Prkab2), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IDA]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IDA]	Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]	MGC93432	MGC93432
Rattus norvegicus	Unigene	Rn.20591	ILMN_161318	RN.20591	Rn.20591		Rn.20591		20417199	BQ200734			ILMN_1530191	0002900670	S	100	AGGAAACAGGCGCCACAGTATAAAAGTTATAAATAAGGGGCTTTCAAAAC					UI-R-EB1-clq-a-21-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone UI-R-EB1-clq-a-21-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62647078-S	ILMN_49344	LOC502746	XM_578245.1	XM_578245.1		502746	62647078	XM_578245.1	LOC502746	XP_578245.1	ILMN_1373790	0001660736	S	173	GTCCCCGCCCCACAGGATCAACGTGACAGATGACAATTATGCCCTTTGCG				4q22	PREDICTED: Rattus norvegicus similar to ribosomal protein L38 (LOC502746), mRNA.					
Rattus norvegicus	RefSeq	GI_57012395-A	ILMN_273222	RT1-CE12	XM_001052972.1	XM_001052972.1		309600	109509669	XM_001052972.1	RT1-CE12	XP_001052972.1	ILMN_1376933	0000580082	S	1018	AGAGAAACACAGGTGGGGAAGGAGGAGACTACACCCCTGCTCCAGACAGG	20|NW_047606.1	+	149706-149717:149895-149927:150134-150138		PREDICTED: Rattus norvegicus RT1 class I, CE12 (RT1-CE12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62655529-S	ILMN_277523	RGD1562929_PREDICTED	XM_001055652.1	XM_001055652.1		316745	109487651	XM_001055652.1	RGD1562929_predicted	XP_001055652.1	ILMN_1351222	0006450750	S	329	CAAGCACCCAAACAGCAGAAACGGCTTCCTGAAGCGGGTGAAGGAGAACG				9q38	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1562929_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655988-S	ILMN_270077	CYFIP2_PREDICTED	XM_001068689.1	XM_001068689.1		303073	109490573	XM_001068689.1	Cyfip2_predicted	XP_001068689.1	ILMN_1372050	0002060017	S	4070	GTCCCTGGCCACCACCTGCTAGGTAGGAAATCCTGCAGACCTTCAACCCA				10q21	PREDICTED: Rattus norvegicus cytoplasmic FMR1 interacting protein 2 (predicted), transcript variant 1 (Cyfip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648958-S	ILMN_49846	LOC313204	XM_232947.3	XM_232947.3		313204	62648958	XM_232947.3	LOC313204	XP_232947.2	ILMN_1363390	0006510113	S	2570	GTTATGTAGACCAGGCTGACCTTGAACTTGTTATGTAGACCGGGCTGGCC					PREDICTED: Rattus norvegicus hypothetical LOC313204 (LOC313204), mRNA.					
Rattus norvegicus	RefSeq	GI_62648009-S	ILMN_290213	RGD1562010_PREDICTED	XM_001078533.1	XM_001078533.1		500286	109474032	XM_001078533.1	RGD1562010_predicted	XP_001078533.1	ILMN_1366062	0006940497	S	855	GGTGTACCCCATTGTGGATTTTCCCCTGAAGGACATCTCTCTGGCCTCCA				4q42	PREDICTED: Rattus norvegicus similar to Fls485 protein (predicted) (RGD1562010_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527130-S	ILMN_291344	ACTR10	NM_001009602.1	NM_001009602.1		299121	57527130	NM_001009602.1	Actr10	NP_001009602.1	ILMN_1367040	0003360170	S	1201	ACCCGCCTCTGGAGATGATGTTTGATGTTGGGAAGACGCAGCCACCGCTG	6	+	93080527-93080576	6q24	Rattus norvegicus actin-related protein 10 homolog (S. cerevisiae) (Actr10), mRNA.	A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence ISS]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95127	MGC95127
Rattus norvegicus	RefSeq	GI_62647666-S	ILMN_54354	LOC297380	XM_232111.3	XM_232111.3		297380	62647666	XM_232111.3	LOC297380	XP_232111.3	ILMN_1351602	0000510500	S	1925	GACCATTGAACTGCCCACCAGCAGCCTCAACAGCCTGGAAATCATTAGGC				4q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14397 (LOC297380), mRNA.					
Rattus norvegicus	RefSeq	GI_34873800-S	ILMN_277238	LOC684368	XM_001070069.1	XM_001070069.1		684368	109505474	XM_001070069.1	LOC684368	XP_001070069.1	ILMN_1359087	0000430132	S	570	CAAGATTGCCCTGTGGACAAGTGAAGCAGAGAACAAGGCCGGTGTGATGC					PREDICTED: Rattus norvegicus similar to eukaryotic translation initiation factor 4e 1a (LOC684368), mRNA.					
Rattus norvegicus	RefSeq	GI_57164136-S	ILMN_279093	RGD1310224	NM_001009275.1	NM_001009275.1		291076	57164136	NM_001009275.1	RGD1310224	NP_001009275.1	ILMN_1362960	0001170082	S	949	GTGCTGTGGGCCAGGAAAGGCTGAAGTCAGAGGAGTGGAAGGATGCACTC	17	+	36274663-36274712	17p12	Rattus norvegicus similar to RIKEN cDNA 1810022C23 (RGD1310224), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]	MGC108813	MGC108813
Rattus norvegicus	RefSeq	GI_62660675-S	ILMN_276898	RGD1563315_PREDICTED	XM_001062281.1	XM_001062281.1		305461	109500796	XM_001062281.1	RGD1563315_predicted	XP_001062281.1	ILMN_1351845	0001570041	S	1486	CCCTGGACTATGAAGATGATGAGGATGACACCCAGGCGAAGACGGTTGTG				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410018C17 (predicted) (RGD1563315_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090272-S	ILMN_273937	RPS4X	NM_001007600.1	NM_001007600.1		29426	56090272	NM_001007600.1	Rps4x	NP_001007601.1	ILMN_1362916	0004280358	S	532	GGGAACCTGTGTATGGTGACTGGAGGTGCTAACTTGGGGAGAATTGGTGT	X	-	90250066-90250115	Xq31	Rattus norvegicus ribosomal protein S4, X-linked (Rps4x), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]	MGC105788	MGC105788
Rattus norvegicus	RefSeq	GI_38454283-S	ILMN_262924	PPM1E	NM_198773.1	NM_198773.1		360593	38454283	NM_198773.1	Ppm1e	NP_942068.1	ILMN_1358810	0001230068	S	1949	CGCCATCACAGCCTGAACGGAGTGGTGCTGGAGAGCTTCTGGTTTCTTTT	10	-	75517450-75517499	10q26	Rattus norvegicus protein phosphatase 1E (PP2C domain containing) (Ppm1e), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576434-S	ILMN_286665	OLR1587	NM_001000913.1	NM_001000913.1		405224	47576434	NM_001000913.1	Olr1587	NP_001000913.1	ILMN_1351968	0005720452	S	529	CTTTGTGACCTGGAACCTGTAATTCGGTTGGCATGTGTGGACACTAGCTG	13	+	89811486-89811535	13q24	Rattus norvegicus olfactory receptor 1587 (Olr1587), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1587	Olr1587
Rattus norvegicus	RefSeq	GI_62665900-S	ILMN_48742	RGD1310149_PREDICTED	XM_228362.4	XM_228362.4		294565	109509379	XM_228362.4	RGD1310149_predicted	XP_228362.4	ILMN_1353835	0002100315	S	1540	CTCCGAGAAACTAGGGCTGACAAGAAGAGGCTACGGAAAACCCTGCGAGA	20	-	18853659-18853708	20p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200015N20 (predicted) (RGD1310149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27730660-S	ILMN_268254	RGD1563636_PREDICTED	XM_001068593.1	XM_001068593.1		292466	109460425	XM_001068593.1	RGD1563636_predicted	XP_001068593.1	ILMN_1372154	0002350139	S	182	GCCCAAAGGAAAAGAATCTGAAAGCGAAAGGACTGGTGCACATGCCCACT				1p13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1563636_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655926-S	ILMN_262543	CPEB4_PREDICTED	XM_001064017.1	XM_001064017.1		303010	109490477	XM_001064017.1	Cpeb4_predicted	XP_001064017.1	ILMN_1371786	0006900435	S	7165	CTGCTCCCTAATTTCCCAGTGTATTGCTCACACTATCAGAAGGCAGCGTT				10q12	PREDICTED: Rattus norvegicus cytoplasmic polyadenylation element binding protein 4 (predicted) (Cpeb4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56961642-S	ILMN_268204	LIPC	NM_012597.2	NM_012597.2		24538	56961642	NM_012597.2	Lipc	NP_036729.2	ILMN_1367184	0000360563	S	1410	ATGGGACACAGAGCCTCACTACGCGGGCCTCATTCTGAAGACCATCTGGG	8	-	75327423-75327472	8q24	Rattus norvegicus lipase, hepatic (Lipc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IDA]; The chemical reactions and pathways involving phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. They are important constituents of cell membranes [goid 6658] [evidence IDA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways resulting in the formation of the heparan sulfate proteoglycan, a glycosaminoglycan with repeat unit consisting of alternating (alpha1->4)-linked hexuronic acid and glucosamine residues; the former are a mixture of sulfated and nonsulfated D-glucuronic acid and L-iduronic acid; the L-iduronic acid is either sulfated or acetylated on its amino group as well as being sulfated on one of its hydroxyl groups; heparan sulfate chains are covalently linked to peptidyl-serine by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylosyl to serine residues [goid 15012] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; The chemical reactions and pathways involving phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. It is a major structural phospholipid in mammalian systems. It tends to be more abundant than phosphatidylcholine in the internal membranes of the cell and is an abundant component of prokaryotic membranes [goid 46337] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity [goid 46461] [evidence IDA]; The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes [goid 46470] [evidence IDA]; The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids [goid 46473] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence IEA]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IDA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IDA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IDA]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit [goid 43395] [evidence IMP]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC108746	MGC108746
Rattus norvegicus	RefSeq	GI_62661145-S	ILMN_262759	LOC361016	NM_001014137.2	NM_001014137.2		361016	70912394	NM_001014137.2	LOC361016	NP_001014159.2	ILMN_1366071	0006940520	S	204	GGGCCCTCTGCGGGAATGTTCAAAAATGAGTACCAGGGAGGCGCATTTGT	15	+	18179881-18179895:18179896-18179916:18182068-18182081	15p14	Rattus norvegicus similar to RIKEN cDNA 4933406L09 (LOC361016), mRNA.				MGC116196	MGC116196
Rattus norvegicus	RefSeq	GI_62642752-S	ILMN_59520	LOC502495	XM_577977.1	XM_577977.1		502495	62642752	XM_577977.1	LOC502495	XP_577977.1	ILMN_1353076	0001690086	S	659	GCTGCAGGATCGGGGAGGGACATCTTACATGATATGGGAGCAGTGGTTAC					PREDICTED: Rattus norvegicus LOC502495 (LOC502495), mRNA.					
Rattus norvegicus	RefSeq	GI_56605671-S	ILMN_279750	TBL3	NM_001008277.1	NM_001008277.1		287120	56605671	NM_001008277.1	Tbl3	NP_001008278.1	ILMN_1366008	0004150239	S	2145	GGGATCCTGAGGCCTGTGAGAAACTGGAAGCCACTGTACTCCGACTTCGA	10	-	13954433-13954482	10q12	Rattus norvegicus transducin (beta)-like 3 (Tbl3), mRNA.	A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins [goid 32040] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]		MGC94510	MGC94510
Rattus norvegicus	RefSeq	GI_47575873-S	ILMN_303022	MAFK	NM_145673.2	NM_145673.2		246760	47575873	NM_145673.2	Mafk	NP_663706.2	ILMN_1349829	0002970465	S	2384	AACTATTTCAAAAGGTGTCAGGGACACATGCCGATCATGCCGAGGCCTGG	12	-	15312632-15312681	12q11	Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian) (Mafk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662810-S	ILMN_48575	LOC361164	XM_346942.2	XM_346942.2		361164	62662810	XM_346942.2	LOC361164	XP_346943.2	ILMN_1356730	0002360164	S	289	CATGAAGCACAACCCTGCCATTTCCAGCAGACACAGACCTCCATCGCCGT					PREDICTED: Rattus norvegicus hypothetical LOC361164 (LOC361164), mRNA.					
Rattus norvegicus	RefSeq	GI_62639108-S	ILMN_265785	ERCC1_PREDICTED	XM_001066703.1	XM_001066703.1		292673	109461313	XM_001066703.1	Ercc1_predicted	XP_001066703.1	ILMN_1372663	0000780154	S	838	GTGTCTGACCACCGTGAAATCTGTGAACAAGACTGACAGCCAGACCCTCC				1q21	PREDICTED: Rattus norvegicus excision repair cross-complementing rodent repair deficiency, complementation group 1 (predicted) (Ercc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576990-S	ILMN_270963	OLR271	NM_001000732.1	NM_001000732.1		404988	47576990	NM_001000732.1	Olr271	NP_001000732.1	ILMN_1369407	0006200010	S	788	TGACCCCCAAGTCCAACTACTCCACAGACCAGAACAAGGTGTTATCTGTA	1	+	166013339-166013388	1q33	Rattus norvegicus olfactory receptor 271 (Olr271), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr271	Olr271
Rattus norvegicus	RefSeq	GI_62639575-S	ILMN_265164	RGD1562094_PREDICTED	XM_001080227.1	XM_001080227.1		499137	109461794	XM_001080227.1	RGD1562094_predicted	XP_001080227.1	ILMN_1353756	0002900048	S	2481	CGAATGCAAACAGTGTGGGAAAGCCTTTAGGGGTCACAGTTCCTTTCGGA				1q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810426N06 (predicted) (RGD1562094_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652036-S	ILMN_49121	LOC299740	XM_213087.3	XM_213087.3		299740	62652036	XM_213087.3	LOC299740	XP_213087.1	ILMN_1358580	0003170041	S	0	GAACGAGGCTTGGGCCCGGCAGAATGGCTCCAGCAAAGAAGGGTGGCGAG				7q13	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC299740), mRNA.					
Rattus norvegicus	RefSeq	GI_62651969-S	ILMN_68722	LOC314670	XM_234980.3	XM_234980.3		314670	62651969	XM_234980.3	LOC314670	XP_234980.3	ILMN_1359960	0003940019	S	3353	GGAGCCCCTCCCACCAATAAAGGTTAGCAACTTGTCGGGCTTTCATGGCA				7q13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (LOC314670), mRNA.					
Rattus norvegicus	RefSeq	GI_8393827-S	ILMN_280429	NEU2	NM_017130.1	NM_017130.1		29204	8393827	NM_017130.1	Neu2	NP_058826.1	ILMN_1375230	0002120037	S	1315	CATGGTGCTCAGTGACCTCATTGCATGTGGCTTCCAAAGGGCTTCCTGTG	9	+	86556062-86556076:86556077-86556111	9q35	Rattus norvegicus neuraminidase 2 (Neu2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates [goid 4308] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]	MGC108717	MGC108717
Rattus norvegicus	RefSeq	GI_27706989-S	ILMN_262743	RGD1563590_PREDICTED	XM_228599.1	XM_228599.1		302435	27706989	XM_228599.1	RGD1563590_predicted	XP_228599.1	ILMN_1361710	0003190301	S	36	GGAAAACAGTTACCAGGCCGGAGGTGGGGCTCAGGCTTATGGAGATGCTG	X	-	79184407-79184456	Xq22	PREDICTED: Rattus norvegicus similar to melanoma antigen 2 (predicted) (RGD1563590_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656873-S	ILMN_51650	PHOSPHO1_PREDICTED	XM_220877.4	XM_220877.4		287644	109488842	XM_220877.4	Phospho1_predicted	XP_220877.3	ILMN_1362655	0002260176	S	856	GCACTTCGAGCGCCTCTTCTATGTGGGTGATGGTGCAAATGACTTCTGCC	10	+	84541702-84541751	10q31	PREDICTED: Rattus norvegicus phosphatase, orphan 1 (predicted) (Phospho1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657046-S	ILMN_62424	RGD1563442_PREDICTED	XM_220977.4	XM_220977.4		303537	109489019	XM_220977.4	RGD1563442_predicted	XP_220977.4	ILMN_2038916	0000020356	S	836	CTGAGCCAGCAGAAGTGGCTGCAGGAAATGGAGTGAATGGGGAAGGCAGG	10	-	89574440-89574489	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein A930006D11 (predicted) (RGD1563442_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657044-S	ILMN_62424	RGD1563442_PREDICTED	XM_220977.4	XM_220977.4		303537	109489019	XM_220977.4	RGD1563442_predicted	XP_220977.4	ILMN_2039115	0005860195	S	1271	AGTCTAAATTGGCCTTGCAGAAGCAACTCACCAAGACGCTGGCAGCCCGC	10	-	89572966-89573014:89573487-89573487	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein A930006D11 (predicted) (RGD1563442_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27689642-S	ILMN_62424	RGD1563442_PREDICTED	XM_220977.4	XM_220977.4		303537	109489019	XM_220977.4	RGD1563442_predicted	XP_220977.4	ILMN_2039900	0002970392	S	958	AACACAGGAGCTAAGCACAGATGGATGGTGGAAGGTCATCAGGGCGCTCC	10	-	89573942-89573985:89574362-89574367	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein A930006D11 (predicted) (RGD1563442_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577240-S	ILMN_272811	OLR383	NM_001000262.1	NM_001000262.1		293816	47577240	NM_001000262.1	Olr383	NP_001000262.1	ILMN_1356227	0001400670	S	351	GGCCTATGACCGTTATGTAGCTGTATGTAATCCCCTCCTTTATGCCATGG	1	-	217015672-217015721	1q43	Rattus norvegicus olfactory receptor 383 (Olr383), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr383	Olr383
Rattus norvegicus	RefSeq	GI_16758397-S	ILMN_289809	ACSL5	NM_053607.1	NM_053607.1		94340	16758397	NM_053607.1	Acsl5	NP_446059.1	ILMN_1363573	0006400242	S	2176	AAGGTTGCTGAGCTGGAAGCGGTGGGGGACGAAGCGGAAACTATGTCCAG				1q55	Rattus norvegicus acyl-CoA synthetase long-chain family member 5 (Acsl5), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IDA]	Acs5; Facl5	Acs5; Facl5
Rattus norvegicus	RefSeq	GI_57113772-S	ILMN_263643	VNR2	NM_173298.2	NM_173298.2		286957	57113772	NM_173298.2	Vnr2	NP_775420.2	ILMN_1373176	0006770050	S	760	CGAAAAGCATCTCCAGAACAAAGGGCCACCCGTTCCATCCTGATGCTCAG	4	+	124242196-124242245	4q34	Rattus norvegicus vomeronasal receptor 2 (Vnr2), mRNA.				V1ra15; Vn2	V1ra15; Vn2
Rattus norvegicus	RefSeq	GI_62644466-S	ILMN_54615	ADH6A_PREDICTED	XM_215715.3	XM_215715.3		295498	62644466	XM_215715.3	Adh6a_predicted	XP_215715.3	ILMN_1373231	0002060341	S	1565	CAGAAACAGCCTGAAGGGCTTTCCGAGACCAAGAGCCAGCGGAAGGACTT				2q44	PREDICTED: Rattus norvegicus alcohol dehydrogenase 6A (class V) (predicted) (Adh6a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078796-S	ILMN_283714	SEPT10	NM_001014033.1	NM_001014033.1		309891	62078796	NM_001014033.1	Sept10	NP_001014055.1	ILMN_1353996	0002970044	S	1318	ACCTGTGAGCTGTTCCCACACCAGTCATTTTTGGCCTCAGGTAGCAGCAT	Un|NW_047852.1	+	394876-394925		Rattus norvegicus septin 10 (Sept10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of several heterooligomeric complexes containing multiple septins [goid 31105] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652476-S	ILMN_48384	TRIB1	XM_343250.3	XM_343250.3		78969	109480745	XM_343250.3	Trib1	XP_343251.3	ILMN_1374608	0006520070	S	1704	ACACCCTTTTGGTCGGACGATACCCCTTTCATGACTCAGACCCGAGCGCC	7	+	96448241-96448290	7q33	PREDICTED: Rattus norvegicus tribbles homolog 1 (Drosophila) (Trib1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IEA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell migration [goid 14912] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell migration [goid 14912] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling in response to detection of lipopolysaccharide [goid 31665] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling in response to detection of lipopolysaccharide [goid 31665] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that modulates the frequency, rate or extent of MAP kinase activity [goid 43405] [evidence IEA]; Any process that modulates the frequency, rate or extent of MAP kinase activity [goid 43405] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644899-S	ILMN_54703	LOC499773	XM_580012.1	XM_580012.1		499773	62644899	XM_580012.1	LOC499773	XP_580012.1	ILMN_1362947	0006770128	S	264	CCTGCTGAGTGCAGGGTGCTGGCGAGGGTTATCTTGAGGCACCGCATTTT					PREDICTED: Rattus norvegicus LOC499773 (LOC499773), mRNA.					
Rattus norvegicus	RefSeq	GI_62663909-S	ILMN_275933	RGD1564164_PREDICTED	XM_001072124.1	XM_001072124.1		361277	109506181	XM_001072124.1	RGD1564164_predicted	XP_001072124.1	ILMN_1364099	0003060044	S	192	GGGCAAGGCCAAATGGGAAGCTTGGAACCTCCAAAAAGGGTTGTCGAAGG				17q12.3	PREDICTED: Rattus norvegicus similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding inhibitor) (predicted) (RGD1564164_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506476-S	ILMN_273775	RGD1566401_PREDICTED	XR_008690.1	XR_008690.1		500717	109479978	XR_008690.1	RGD1566401_predicted		ILMN_1370261	0004920176	S	76	ATTGCCAAATACTTACTAACCAAGGAGGCTGTCCCTACCGCCCACTGGCC				6q32	PREDICTED: Rattus norvegicus similar to GTL2, imprinted maternally expressed untranslated (predicted) (RGD1566401_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651243-S	ILMN_273775	RGD1566401_PREDICTED	XR_008690.1	XR_008690.1		500717	109479978	XR_008690.1	RGD1566401_predicted		ILMN_1356050	0003450019	S	2004	AGAGCTTAACATGGTGGGAGGAAGTAAGAAGGGCCAAGAGGGCACGGGCG				6q32	PREDICTED: Rattus norvegicus similar to GTL2, imprinted maternally expressed untranslated (predicted) (RGD1566401_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641273-S	ILMN_274701	TUFM_PREDICTED	XM_001077188.1	XM_001077188.1		293481	109462847	XM_001077188.1	Tufm_predicted	XP_001077188.1	ILMN_1352847	0005130022	S	1664	CCAGCCATGACCGAGGAGGACAAGAACATCAAATGGAGCTGAGTCTGGAC				1q36	PREDICTED: Rattus norvegicus Tu translation elongation factor, mitochondrial (predicted) (Tufm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648039-S	ILMN_271837	CRELD1	NM_001024783.1	NM_001024783.1		312638	67078457	NM_001024783.1	Creld1	NP_001019954.1	ILMN_1358975	0000050471	S	1609	GAGGTCCTGAAGCTGCTGTCTTGAGATCTTTGCCTAGAGGACTGGCGGGC	4	+	149384713-149384762	4q42	Rattus norvegicus cysteine-rich with EGF-like domains 1 (Creld1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663153-S	ILMN_270107	RGD1308751_PREDICTED	XM_001065885.1	XM_001065885.1		290981	109505389	XM_001065885.1	RGD1308751_predicted	XP_001065885.1	ILMN_1354152	0003940373	S	802	GGCTTTGTGAAAGTCCCACTGAGCGAAGATGACCTTATGAGTGCCGTGGC				17p14	PREDICTED: Rattus norvegicus similar to Cathepsin L precursor (Major excreted protein) (MEP) (predicted) (RGD1308751_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667221-S	ILMN_291452	DIAP2_PREDICTED	XM_001066898.1	XM_001066898.1		317189	109512304	XM_001066898.1	Diap2_predicted	XP_001066898.1	ILMN_1358916	0005220605	S	3130	CTTCTGGAAGCCCTACAGTCAGGTGCAGCATTCAGAGACCGCAGAAAGCG				Xq34	PREDICTED: Rattus norvegicus diaphanous homolog 2 (Drosophila) (predicted) (Diap2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653071-S	ILMN_300997	RGD1560236_PREDICTED	XM_001064500.1	XM_001064500.1		366987	109482920	XM_001064500.1	RGD1560236_predicted	XP_001064500.1	ILMN_1355803	0001690603	S	1084	GTGATGGGAGTTACCAGTTACGGACACGGCTGCGGACGGAGGCATTTTCC					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC57341 (predicted) (RGD1560236_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34868297-S	ILMN_263646	KB15	XM_001066509.1	XM_001066509.1		366992	109482962	XM_001066509.1	Kb15	XP_001066509.1	ILMN_1354477	0001570095	S	1672	AGCGGCAGCAGCTCAAGCATGCGCATTGTCTCCAAGACATCGTCCACCAA				7q36	PREDICTED: Rattus norvegicus type II keratin Kb15 (Kb15), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948463-S	ILMN_298381	UBL7	NM_001004247.1	NM_001004247.1		300744	51948463	NM_001004247.1	Ubl7	NP_001004247.1	ILMN_1349036	0004200300	S	1209	GCAGCTCTGGAACTCATCTTTGCTGGAGGAGCCCCATGAACTTCTTGTAC	8	+	61707525-61707563:61707564-61707574	8q24	Rattus norvegicus ubiquitin-like 7 (bone marrow stromal cell-derived) (Ubl7), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94284	MGC94284
Rattus norvegicus	RefSeq	GI_47576416-S	ILMN_279624	OLR1576	NM_001000499.1	NM_001000499.1		304985	47576416	NM_001000499.1	Olr1576	NP_001000499.1	ILMN_1349181	0007000687	S	676	AAAATTGTGTCCACTGAAGGCCAGAAGAAAGCCTTTGCCACCTGTGCCTC	13	+	89171062-89171111	13q24	Rattus norvegicus olfactory receptor 1576 (Olr1576), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1576	Olr1576
Rattus norvegicus	RefSeq	GI_6981259-S	ILMN_262488	NDUFA5	NM_012985.1	NM_012985.1		25488	6981259	NM_012985.1	Ndufa5	NP_037117.1	ILMN_1360139	0004210427	S	160	GAAGAAGACTACTGGCCTGGTGGGATTGGCCGTTTGCGACACTCCACACG	4	-	50652571-50652581:50657379-50657417	4q22	Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 (Ndufa5), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22904] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16651] [evidence IEA]	NADHUO; MGC72911	NADHUO; MGC72911
Rattus norvegicus	RefSeq	GI_62655424-S	ILMN_268968	NEU4_PREDICTED	XM_001069619.1	XM_001069619.1		316642	109487552	XM_001069619.1	Neu4_predicted	XP_001069619.1	ILMN_1367570	0000840093	S	1221	CATATGGGAATCTACCTGAGCCGATCCCCCTTGGACCCTCACAGCTGGAC				9q36	PREDICTED: Rattus norvegicus sialidase 4 (predicted) (Neu4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113836	ILMN_277269	V1RB6	NM_001008968.1	NM_001008968.1		494310	57113836	NM_001008968.1	V1rb6	NP_001008968.1	ILMN_1650668	0004480537	S	674	CTTCAAAGGCATCTCCAGAACGAAGGGCTACCAGAACCATCCTGCTGCTC	4	+	123898404-123898453	4q34	Rattus norvegicus vomeronasal 1 receptor, B6 (V1rb6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654240-S	ILMN_270215	LOC689265	XM_001070183.1	XM_001070183.1		689265	109483929	XM_001070183.1	LOC689265	XP_001070183.1	ILMN_1371539	0006650053	S	235	TGGCGGTACTGTCAGGTCCTCAGCGCAATCTACACCATCCAGGGCCACTG	8	-	111669958-111670007	8q32	PREDICTED: Rattus norvegicus similar to IQ motif containing F4 (LOC689265), mRNA.					
Rattus norvegicus	RefSeq	GI_62650093-S	ILMN_63035	EPHA2_PREDICTED	XM_345596.3	XM_345596.3		366492	109475756	XM_345596.3	Epha2_predicted	XP_345597.3	ILMN_1373397	0005860082	S	2861	TTCCTGGCCACCAGAAGCGCATTGCCTACAGCCTGCTGGGACTCAAAGAC	5	+	160213781-160213830	5q36	PREDICTED: Rattus norvegicus Eph receptor A2 (predicted) (Epha2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758301-S	ILMN_274298	SLC22A7	NM_053537.1	NM_053537.1		89776	16758301	NM_053537.1	Slc22a7	NP_445989.1	ILMN_1365234	0004060500	S	1639	CCAGGATGTGGAGAGGAAGAGTACCCAGGAGGAAGATGTGTAGGTCCGGG	9	+	9939540-9939560:9940071-9940092:9940093-9940099	9q12	Rattus norvegicus solute carrier family 22 (organic anion transporter), member 7 (Slc22a7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence TAS]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence TAS]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence IDA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence ISS]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]	Oat2	Oat2
Rattus norvegicus	RefSeq	GI_62654279-S	ILMN_49205	UBE1L_PREDICTED	XM_217252.4	XM_217252.4		301000	109483949	XM_217252.4	Ube1l_predicted	XP_217252.3	ILMN_1351712	0004730301	S	2774	CTGAGAGGACACTGGAATCCCTGCTGGCCCATCTCCAGGAAGAGCATGGA	8	+	113252737-113252774:113252848-113252859	8q32	PREDICTED: Rattus norvegicus ubiquitin-activating enzyme E1-like (predicted) (Ube1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653711-S	ILMN_66703	LOC315686	XM_236266.3	XM_236266.3		315686	62653711	XM_236266.3	LOC315686	XP_236266.3	ILMN_1353993	0003140288	S	5727	CCGCCATACCATGAAAGGAGGAGAGAGATTCCCAGCCGTTAGATCATGGG				8q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C230081A13 (predicted) (LOC315686), mRNA.					
Rattus norvegicus	RefSeq	GI_62639739-A	ILMN_282625	TULP2	NM_001012168.1	NM_001012168.1		361576	58865907	NM_001012168.1	Tulp2	NP_001012168.1	ILMN_1376854	0002850195	S	1366	GCGTCACGCGGGCTTCTGTCAAGAACTTCCAGATAGTGCACCCGGATGAA	1	+	95993145-95993194	1q22	Rattus norvegicus tubby-like protein 2 (Tulp2), mRNA.					
Rattus norvegicus	RefSeq	GI_62655761-S	ILMN_287822	KREMEN2_PREDICTED	XM_001056095.1	XM_001056095.1		287102	109490266	XM_001056095.1	Kremen2_predicted	XP_001056095.1	ILMN_1367869	0005220687	S	1047	CTACCGGGGGCTGCAGGATACAGTGGAGGACAGAGCGTCTCCAGAGGATT				10q12	PREDICTED: Rattus norvegicus kringle containing transmembrane protein 2 (predicted) (Kremen2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645092-S	ILMN_64169	LOC497771	XM_579736.1	XM_579736.1		497771	62645092	XM_579736.1	LOC497771	XP_579736.1	ILMN_1352553	0001050242	S	11157	CTCAAAAGTCGTCCTCCAAGAATGTCCTAGCCTTGGCTCTGGAGGGCAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_201989 (LOC497771), mRNA.					
Rattus norvegicus	RefSeq	GI_62645953-S	ILMN_61067	RGD1307909_PREDICTED	XM_215865.4	XM_215865.4		296198	109468926	XM_215865.4	RGD1307909_predicted	XP_215865.3	ILMN_1371592	0006220100	S	290	AGAGTTCCAGAGGTGGATCATCTGCTGTTGTGGCGCTACGGAGTGCGAGG	3	+	132598285-132598334	3q41	PREDICTED: Rattus norvegicus similar to Hypothetical BAF-like protein C20orf179 (predicted) (RGD1307909_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647001-S	ILMN_269077	RGD1561995_PREDICTED	XM_001067608.1	XM_001067608.1		500076	109473337	XM_001067608.1	RGD1561995_predicted	XP_001067608.1	ILMN_1352787	0001500100	S	2967	GAAACCCAGTGAGAGGAATGGCCCGCTCAGCTTTCCACCTGAAGTCCCAG				4q22	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC340351 (predicted) (RGD1561995_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27667971-S	ILMN_294090	RGD1311190_PREDICTED	XM_001059245.1	XM_001059245.1		287130	109490354	XM_001059245.1	RGD1311190_predicted	XP_001059245.1	ILMN_1369514	0000630427	S	1127	TCCATGTAGACAGAAGGATAGTAGCCACCGGCTCCCGCTTCAGAGAGGGC				10q12	PREDICTED: Rattus norvegicus similar to Neuronal pentraxin II precursor (NP-II) (NP2) (Neuronal activity-regulated pentraxin) (predicted) (RGD1311190_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659423-S	ILMN_69963	RGD1560834_PREDICTED	XM_222679.4	XM_222679.4		289052	109497969	XM_222679.4	RGD1560834_predicted	XP_222679.3	ILMN_1357439	0001400433	S	2511	GCTGCCACCACAGACGCAGCCAACTGATTATCCTCGTGCAGCAGACTTAG	13	+	52802366-52802415	13q13	PREDICTED: Rattus norvegicus similar to FRBZ1 protein (FRBZ1) (predicted) (RGD1560834_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577068-S	ILMN_269413	OLR305	NM_001000240.1	NM_001000240.1		293603	47577068	NM_001000240.1	Olr305	NP_001000240.1	ILMN_1365440	0004610519	S	871	ACACTGAGGAACAAGGATGTCAAGCATGCCCTGGGCAGAATATTTGCCTC	1	+	200560203-200560252	1q41	Rattus norvegicus olfactory receptor 305 (Olr305), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr305; ratchr1-200709325-200710257_ORF	Olr305; ratchr1-200709325-200710257_ORF
Rattus norvegicus	RefSeq	GI_62652333-S	ILMN_298544	NCALD	NM_001024371.1	NM_001024371.1		553106	66730546	NM_001024371.1	Ncald	NP_001019542.1	ILMN_1372614	0002100014	S	3168	GCTATGTGGAGTGGCCCCGTTATCAGTTGGTTGTGTAGCTCTTGCCTGGC				7q22	Rattus norvegicus neurocalcin delta (Ncald), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence ISS]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57114277-S	ILMN_272909	V1RE15	NM_001008967.1	NM_001008967.1		494311	57114277	NM_001008967.1	V1re15	NP_001008967.1	ILMN_1360526	0007100019	S	677	ATTCTCCTGAGTTCAGAGCCACTCAAAATATACTGGCCCTGGTGTCTACC	1|NW_047581.1	+	217521-217570		Rattus norvegicus vomeronasal 1 receptor, E15 (V1re15), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653854	ILMN_50806	LOC501015	XM_576426.2	XM_576426.2		501015	109483668	XM_576426.2	LOC501015	XP_576426.2	ILMN_1650075	0001580053	S	1200	TCTTGGCCCTAGGACACTCAAGGCCTCTTGGACTCTGACAGTGACGTGGC	8	+	72111849-72111898	8q24	PREDICTED: Rattus norvegicus similar to nuclear localized factor 2 (LOC501015), mRNA.					
Rattus norvegicus	RefSeq	GI_62645209-S	ILMN_70018	LOC366058	XM_578122.1	XM_578122.1		366058	62645209	XM_578122.1	LOC366058	XP_578122.1	ILMN_1368451	0007050286	S	137	GCACAACTTCGTCTTAAAGGTGTAGAACACTGTGCGTGAGATTGGCCTCC				3q21	PREDICTED: Rattus norvegicus similar to dynein, cytoplasmic, light chain 2A (LOC366058), mRNA.					
Rattus norvegicus	RefSeq	GI_62650928-S	ILMN_61522	RGD1560857_PREDICTED	XM_229707.4	XM_229707.4		317036	109478413	XM_229707.4	RGD1560857_predicted	XP_229707.2	ILMN_1356038	0001980537	S	828	TACCAAAGAAGGCAAAGACGGAAGCCAACCGGGGTTCAGAGCAGGTCCAG	6	+	103565088-103565137	6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900016D05 (predicted) (RGD1560857_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114317-S	ILMN_271249	SPINK4	NM_001008871.1	NM_001008871.1		408233	57114317	NM_001008871.1	Spink4	NP_001008871.1	ILMN_1365120	0006350441	S	68	AGCCCATCTGTGAGCACATGGCCGAGTTTCCAAACTGTCCCCGGTCACCT	5	+	58323878-58323927	5q22	Rattus norvegicus serine peptidase inhibitor, Kazal type 4 (Spink4), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981569-S	ILMN_298538	SP1	NM_012655.1	NM_012655.1		24790	6981569	NM_012655.1	Sp1	NP_036787.1	ILMN_1373417	0001340750	S	2172	CAAGACCCACCAGAACAAAAAGGGAGGCCCAGGTGTAGCCTTGAGCGTGG	7	+	141188953-141189002	7q36	Rattus norvegicus Sp1 transcription factor (Sp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IMP]; The process by which a myeloid precursor cell acquires specializes features of a megakaryocyte [goid 30219] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of global transcription from an RNA polymerase II promoter [goid 45817] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of global transcription from an RNA polymerase II promoter [goid 45817] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized during embryonic development. Morphogenesis pertains to the creation of form [goid 48596] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother [goid 60136] [evidence ISS]; A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood [goid 60216] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649943-S	ILMN_55369	RGD1560286_PREDICTED	XM_575942.2	XM_575942.2		500575	109475746	XM_575942.2	RGD1560286_predicted	XP_575942.1	ILMN_1352124	0002630152	S	767	GGAAAGGGTGGGGATTAGGGGAGGATTAGGGGAACCTACCAAGGACTCAG	5	-	159975566-159975615	5q36	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 4, ERATO Doi 22, expressed (predicted) (RGD1560286_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652931-S	ILMN_48471	RGD1564322_PREDICTED	XM_576327.2	XM_576327.2		500917	109481151	XM_576327.2	RGD1564322_predicted	XP_576327.2	ILMN_1370990	0000540398	S	769	AGGGTCAAGGGGCAGGGGATGAGGGTCTGAGGTCTAAGGCATGGGTCAAA	7	-	127672203-127672231:127672232-127672252	7q34	PREDICTED: Rattus norvegicus similar to shippo 1 (predicted) (RGD1564322_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661412	ILMN_63490	LOC290071	XM_224025.3	XM_224025.3		290071	62661412	XM_224025.3	LOC290071	XP_224025.3	ILMN_1650986	0004590242	S	2411	GCACTGGTTAGCAGAAGACTACTTAAGGAACATAGCAGGAGGCAGCAGGC				15p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC290071), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718012-S	ILMN_60888	LOC503325	XM_578859.1	XM_578859.1		503325	62718012	XM_578859.1	LOC503325	XP_578859.1	ILMN_1359571	0002370114	S	296	TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACACCCGCCGCG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC503325), mRNA.					
Rattus norvegicus	RefSeq	GI_47576134-S	ILMN_263478	OLR1383	NM_214832.1	NM_214832.1		287232	47576134	NM_214832.1	Olr1383	NP_999997.1	ILMN_1370446	0003450184	S	534	CTTCTGTGAGATACTCTCCTTGCTGAAGCTGGTCTGTGAGGACACATCCC	10	-	34220221-34220270	10q21	Rattus norvegicus olfactory receptor 1383 (Olr1383), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-34221853-34220906_ORF; Olr1383	ratchr10-34221853-34220906_ORF; Olr1383
Rattus norvegicus	RefSeq	GI_34881224-S	ILMN_55121	SLC30A10_PREDICTED	XM_223046.3	XM_223046.3		289353	109498340	XM_223046.3	Slc30a10_predicted	XP_223046.3	ILMN_1368472	0000070348	S	1234	ACCAGGAGGGCACGGAATACCAGGATGCCAGCAGAAAAGTCCGCGAGATC	13	+	101491171-101491220	13q26	PREDICTED: Rattus norvegicus solute carrier family 30, member 10 (predicted) (Slc30a10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527191-S	ILMN_268279	RGD1308031	NM_001009667.1	NM_001009667.1		300442	57527191	NM_001009667.1	RGD1308031	NP_001009667.1	ILMN_1350165	0002340500	S	984	CTAGCACTGTACCTGGGCATTTGGTCCCTGGCTGGCAACCCTGAGTTCTC	8	+	21038125-21038174	8q13	Rattus norvegicus similar to RIKEN cDNA 2510048L02 (RGD1308031), mRNA.				MGC109537	MGC109537
Rattus norvegicus	RefSeq	GI_34871965-S	ILMN_280461	GATS	XM_001077942.1	XM_001077942.1		304410	109497230	XM_001077942.1	Gats	XP_001077942.1	ILMN_1362260	0001580609	S	1101	GGAAGATGGTGCGAATAGGAGGACAACCCTTGGGATTCGACGAGTGTGGG				12q12	PREDICTED: Rattus norvegicus opposite strand transcription unit to Stag3 (Gats), mRNA.					
Rattus norvegicus	RefSeq	GI_13928983-S	ILMN_265054	DPYS	NM_031705.1	NM_031705.1		65135	13928983	NM_031705.1	Dpys	NP_113893.1	ILMN_1355025	0004760451	S	1713	CACCATGCTGCCAAGCCCTGGAGAAGCACCTGCCATTTCAACTCTCCAAG	7	-	75368560-75368609	7q22	Rattus norvegicus dihydropyrimidinase (Dpys), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base [goid 6210] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA [goid 6212] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA [goid 6212] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins [goid 19482] [evidence IDA]; The chemical reactions and pathways involving uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA [goid 19860] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence IDA]	Interacting selectively with uracil [goid 2058] [evidence IDA]; Interacting selectively with thymine [goid 2059] [evidence IDA]; Catalysis of the reaction: 5,6-dihydrouracil + H2O = 3-ureidopropionate [goid 4157] [evidence ISS]; Catalysis of the reaction: 5,6-dihydrouracil + H2O = 3-ureidopropionate [goid 4157] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IMP]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648454-S	ILMN_69252	BICD1_PREDICTED	XM_342789.3	XM_342789.3		362466	109472860	XM_342789.3	Bicd1_predicted	XP_342790.2	ILMN_1352661	0005080397	S	2987	CACCTTCCCTTTGTGATCAGAGTCGTCCCAGGACTTCAGGGGCTTCCTAC	4	+	187031993-187032042	4q44	PREDICTED: Rattus norvegicus bicaudal D homolog 1 (Drosophila) (predicted) (Bicd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758731-S	ILMN_290849	RTN1	NM_053865.1	NM_053865.1		116644	16758731	NM_053865.1	Rtn1	NP_446317.1	ILMN_1359496	0006550020	S	3098	GCGCTGACACATAGTGGGTCGCTTATCATGTCCTTGGGTTGCTGGTTGGA				6q24	Rattus norvegicus reticulon 1 (Rtn1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Nsp	Nsp
Rattus norvegicus	RefSeq	GI_62644707-S	ILMN_67928	LOC499746	XM_575081.1	XM_575081.1		499746	62644707	XM_575081.1	LOC499746	XP_575081.1	ILMN_1375176	0003710717	S	1969	CCCTTCAGGAGCCTCACCTTGCAGCTAGTCATAGTAGTTTCTCCAGGGCC				3p13	PREDICTED: Rattus norvegicus similar to hypothetical gene supported by AK097565; BC033939 (LOC499746), mRNA.					
Rattus norvegicus	RefSeq	GI_62638598-S	ILMN_57560	LOC502234	XM_577697.1	XM_577697.1		502234	62638598	XM_577697.1	LOC502234	XP_577697.1	ILMN_1354333	0000840253	S	87	ATCTCTGAGCTTGGATGGCGAGCTCCTACCCTGAAGAGGCTAGAGTGTTC					PREDICTED: Rattus norvegicus similar to Histone H3.3 (LOC502234), mRNA.					
Rattus norvegicus	RefSeq	GI_57527881-S	ILMN_293099	RGD1306952	NM_001008770.2	NM_001008770.2		310201	57527881	NM_001008770.2	RGD1306952	NP_001008770.1	ILMN_1356486	0006420537	S	893	ATTAGGGGAACCTGGGGCCATTCAGGGACCAGCTAGATTCTCAGATATGG	2	+	83680822-83680871	2q22	Rattus norvegicus similar to Ab2-225 (RGD1306952), mRNA.				MGC95111	MGC95111
Rattus norvegicus	RefSeq	GI_16758691-S	ILMN_271018	IL2	NM_053836.1	NM_053836.1		116562	16758691	NM_053836.1	Il2	NP_446288.1	ILMN_1358692	0006020528	S	391	GCCAATTCGATGATGAGCCAGCAACTGTGGTGGAATTTCTGAGGAGATGG	2	-	123655304-123655353	2q25	Rattus norvegicus interleukin 2 (Il2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IMP]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IDA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of differentiation of regulatory T cells [goid 45591] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of resting T cell proliferation [goid 46013] [evidence IEA]; Any process that modulates the frequency, rate or extent of resting T cell proliferation [goid 46013] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51024] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51024] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-2 receptor [goid 5134] [evidence IEA]; Interacting selectively with the interleukin-2 receptor [goid 5134] [evidence ISS]; Interacting selectively with the interleukin-2 receptor [goid 5134] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any carbohydrate [goid 30246] [evidence IDA]; Interacting selectively with a kappa-type opioid receptor [goid 31851] [evidence IMP]; Interacting selectively with glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide [goid 43208] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62656350-S	ILMN_268976	ALOX12_PREDICTED	XM_001079612.1	XM_001079612.1		287454	109491143	XM_001079612.1	Alox12_predicted	XP_001079612.1	ILMN_1357648	0003130136	S	1956	ACAGCCCGGAACCAGCAGCTTGACCTGCCCTACGAATACCTCAAGCCTAG				10q24	PREDICTED: Rattus norvegicus arachidonate 12-lipoxygenase (predicted), transcript variant 2 (Alox12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641510-S	ILMN_290655	CPXM2_PREDICTED	XM_001054321.1	XM_001054321.1		293566	109463040	XM_001054321.1	Cpxm2_predicted	XP_001054321.1	ILMN_1367686	0005570040	S	2390	GGGACGAAAAAGGCGGCAGCGCGGGTGACTCTCTTGGACACTTGAGACAT				1q41	PREDICTED: Rattus norvegicus carboxypeptidase X 2 (M14 family) (predicted) (Cpxm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653971-S	ILMN_56671	LOC503208	XM_578733.1	XM_578733.1		503208	62653971	XM_578733.1	LOC503208	XP_578733.1	ILMN_1353384	0003290050	S	787	TCGGCCTCTCCACGACAACCAAGCTTCCAAATGAAGTCCTGCTGGCAGAG				8q24	PREDICTED: Rattus norvegicus similar to Chain A, Solution Structure Of A Bola-Like Protein From Mus Musculus (LOC503208), mRNA.					
Rattus norvegicus	RefSeq	GI_62647257-S	ILMN_58298	NFE2L3_PREDICTED	XM_231763.4	XM_231763.4		312331	109472047	XM_231763.4	Nfe2l3_predicted	XP_231763.4	ILMN_1363552	0000050739	S	2073	TGACCAAGGTAGACCAGTCAACCCAAGCCACTATGCACTTCAGTACAGCC	4	+	79695510-79695559	4q24	PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2, like 3 (predicted) (Nfe2l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27681498-S	ILMN_263539	HDHD1A_PREDICTED	XM_001056925.1	XM_001056925.1		291585	109507320	XM_001056925.1	Hdhd1a_predicted	XP_001056925.1	ILMN_1357007	0002850465	S	538	GAAGATTCTCCAAATGGGGTGGAGGCAGCAGTGGCCTGTGGGATGCAGGT				18q11	PREDICTED: Rattus norvegicus haloacid dehalogenase-like hydrolase domain containing 1A (predicted) (Hdhd1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662854-S	ILMN_291981	GINS4	NM_001030027.1	NM_001030027.1		290842	71795642	NM_001030027.1	Gins4	NP_001025198.1	ILMN_1367676	0006450739	S	912	TCGTCAGCAACTCGTGGACCGCATGGACACGGAAAAGGAGTCAAGCCAGG	16	+	73257124-73257173	16q12.5	Rattus norvegicus GINS complex subunit 4 (Sld5 homolog) (Gins4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124661; 2810037c03rik	MGC124661; 2810037c03rik
Rattus norvegicus	RefSeq	GI_62647913-S	ILMN_66410	LOC502861	XM_578361.1	XM_578361.1		502861	62647913	XM_578361.1	LOC502861	XP_578361.1	ILMN_1358216	0003850154	S	1237	GCTGTCCCCGAAGGCCCATGTCCCAGCTTGAGATACTACTGGAAGGTAAC					PREDICTED: Rattus norvegicus similar to vomeronasal V1r-type receptor V1ra13 (LOC502861), mRNA.					
Rattus norvegicus	RefSeq	GI_62718068-S	ILMN_272526	LOC363333	XM_001061702.1	XM_001061702.1		363333	109486627	XM_001061702.1	LOC363333	XP_001061702.1	ILMN_1364541	0004010017	S	2567	CAGAGCACACCTATGCCACTCAAGCGGAAGCCAGCGGCCACCATGTGCAT					PREDICTED: Rattus norvegicus similar to Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) (LOC363333), mRNA.					
Rattus norvegicus	RefSeq	GI_56961634-S	ILMN_279712	LTB	NM_212507.2	NM_212507.2		361795	56961634	NM_212507.2	Ltb	NP_997672.1	ILMN_1354499	0003120010	S	908	CCGGAGCGGCGAGAGGATATACGTCAACATCAGTCATCCCGACATGGTGG	20	-	3666734-3666783	20p12	Rattus norvegicus lymphotoxin beta (TNF superfamily, member 3) (Ltb), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence ISS]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages [goid 43120] [evidence TAS]	MGC108924	MGC108924
Rattus norvegicus	RefSeq	GI_19924068-A	ILMN_285968	SPON2	NM_138533.1	NM_138533.1		171569	19924068	NM_138533.1	Spon2	NP_612542.1	ILMN_1376643	0004150044	S	1212	CCATTGCCAAAGTGACCTTCGTGCGGCTACGGCAGAGTCCCAGAGCCTTT	14	-	82972939-82972988	14q21	Rattus norvegicus spondin 2, extracellular matrix protein (Spon2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence TAS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651877-S	ILMN_64100	RGD1563325_PREDICTED	XM_343187.3	XM_343187.3		362857	109480391	XM_343187.3	RGD1563325_predicted	XP_343188.2	ILMN_1362636	0003360121	S	3115	TGTTGTGTGCACCTGGAGGTTTCTGCTATTCGGCTCCTTTTTTGAGTGGG	7	-	20725564-20725613	7q13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC17943 (predicted) (RGD1563325_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655144-S	ILMN_293470	ADAM23	NM_001029899.1	NM_001029899.1		301460	71361650	NM_001029899.1	Adam23	NP_001025070.1	ILMN_1373052	0002480040	S	2591	CCTTGCACTGTGGGGTTCTGGCAATGACATGCTTTCCACCATGCTGCTGG	9	+	62249751-62249800	9q32	Rattus norvegicus ADAM metallopeptidase domain 23 (Adam23), mRNA.				Adam23; MDC3	Adam23; MDC3
Rattus norvegicus	RefSeq	GI_62655291-S	ILMN_55109	RGD1311951_PREDICTED	XM_237334.4	XM_237334.4		316561	109486294	XM_237334.4	RGD1311951_predicted	XP_237334.4	ILMN_1354866	0002030300	S	5119	CTGGTGATCAACTTTGACCTGGAGCCAGAGTGTCCTGATGCTGAGCTGCG	9	-	82583549-82583598	9q34	PREDICTED: Rattus norvegicus similar to sphingosine kinase type 1-interacting protein (predicted) (RGD1311951_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576694-S	ILMN_273464	OLR1709	NM_001000509.1	NM_001000509.1		309578	47576694	NM_001000509.1	Olr1709	NP_001000509.1	ILMN_1362568	0006590528	S	757	TCCACAGGCTCCTTTGCATACCTAAACCCAACCTCAGACTCTCCAACTGC	20	+	844778-844827	20p12	Rattus norvegicus olfactory receptor 1709 (Olr1709), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1709	Olr1709
Rattus norvegicus	RefSeq	GI_47576392-S	ILMN_301158	OLR1562	NM_001000047.1	NM_001000047.1		288185	47576392	NM_001000047.1	Olr1562	NP_001000047.1	ILMN_1352074	0005130619	S	342	TCTGGCAGCCATGGCCTATGACCGCTATGTAGCCATATGCAACCCACTGC	11	+	42477990-42478039	11q12	Rattus norvegicus olfactory receptor 1562 (Olr1562), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1562	Olr1562
Rattus norvegicus	RefSeq	GI_62652493-S	ILMN_291552	RGD1559846_PREDICTED	XR_008715.1	XR_008715.1		500880	109482311	XR_008715.1	RGD1559846_predicted		ILMN_1374638	0004570093	S	552	AGATGGGGGTGCCCTACTGAATCATCAAGGGAAAGACCAGGCTGGGGCGT				7q33	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1559846_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34734057-S	ILMN_300782	HCK	NM_013185.2	NM_013185.2		25734	34734057	NM_013185.2	Hck	NP_037317.2	ILMN_1373013	0004280520	S	1687	TTGATGGGCCGGAAGAACATGAGCACAGCCAGAAGCCCCATCAGGGCCTT	3	+	143489994-143489997:143489998-143490043	3q41	Rattus norvegicus hemopoietic cell kinase (Hck), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Hctk	Hctk
Rattus norvegicus	RefSeq	GI_62661189-S	ILMN_272243	LOC498473	XM_573730.1	XM_573730.1		498473	62661189	XM_573730.1	LOC498473	XP_573730.2	ILMN_1369954	0004610161	S	880	CCAGCAGGAGCACTGAGGGTGCAAAGATTGAAAACACCTCCCGCATCTCA	15	-	19920650-19920699	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498473), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650461-S	ILMN_274908	GDF7	XM_001067529.1	XM_001067529.1		252833	109479053	XM_001067529.1	Gdf7	XP_001067529.1	ILMN_1374721	0006590332	S	1194	TACCAACCACGCCATCATCCAGACGCTGCTCAACTCCATGGCGCCGGATG				6q14	PREDICTED: Rattus norvegicus growth differentiation factor 7, transcript variant 1 (Gdf7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence NAS]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34855449-S	ILMN_272758	CEACAM20_PREDICTED	XM_001076225.1	XM_001076225.1		292701	109461396	XM_001076225.1	Ceacam20_predicted	XP_001076225.1	ILMN_1369974	0002480465	S	1552	GTCTCCCCAGAGCACTTCTATGAGAAGAAGCCACCTTCCGCAGCTCCTGA				1q21	PREDICTED: Rattus norvegicus CEA-related cell adhesion molecule 20 (predicted) (Ceacam20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649617-S	ILMN_268715	CDCA8	NM_001025050.1	NM_001025050.1		500545	68163556	NM_001025050.1	Cdca8	NP_001020221.1	ILMN_1370283	0005890161	S	1164	GTGGGGGTCTTTGTGTGCTTGGTGTGGAGTCACTGAGAACCATCCGTGGT	5	-	144251325-144251374	5q36	Rattus norvegicus cell division cycle associated 8 (Cdca8), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62638523	ILMN_53900	RSHL2_PREDICTED	XM_341754.3	XM_341754.3		361476	109457730	XM_341754.3	Rshl2_predicted	XP_341755.2	ILMN_1649814	0004070463	S	1509	GCAGCAGCCTTAGAAACCATTGGCTCACTTTTAATGGGGGGCGGAGACTG	1	-	41313599-41313648	1q11	PREDICTED: Rattus norvegicus radial spokehead-like 2 (predicted) (Rshl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222315-S	ILMN_272911	LY49S7	NM_001009494.1	NM_001009494.1		494203	57222315	NM_001009494.1	Ly49s7	NP_001009494.1	ILMN_1374495	0004560215	S	229	CAGTGGTCCAGAAAAGCTGGCCCCAGAGTGTGTTCAGTCCCCTGTCTGCT	4	-	168714799-168714821:168716328-168716354	4q42	Rattus norvegicus Ly49 stimulatory receptor 7 (Ly49s7), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658061-S	ILMN_69005	LOC498105	XM_573309.1	XM_573309.1		498105	62658061	XM_573309.1	LOC498105	XP_573309.1	ILMN_1373381	0006020364	S	17	AGTACCACTAGAGATAATCTGATGGCGAGAGGCAAGCGCAGGAACCCAAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498105), mRNA.		The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time [goid 3964] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647692-S	ILMN_55757	NAGK_PREDICTED	XM_216188.3	XM_216188.3		297393	62647692	XM_216188.3	Nagk_predicted	XP_216188.2	ILMN_1372463	0004760037	S	1828	CCCCTGTCTCCAACACACAAGTGTCCATAAGGCATAGCCAGGAAGGTGCC				4q34	PREDICTED: Rattus norvegicus N-acetylglucosamine kinase (predicted) (Nagk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657711-S	ILMN_63937	LOC363733	XM_344001.2	XM_344001.2		363733	62657711	XM_344001.2	LOC363733	XP_344002.2	ILMN_1357438	0003130131	S	274	AAAGAAAACCCTGGAAGAGAGCTCGGCAACTGGAGAAGGCAGTGAGCACT				11q11	PREDICTED: Rattus norvegicus similar to Histone deacetylase 1 (HD1) (LOC363733), mRNA.					
Rattus norvegicus	RefSeq	GI_13569845-S	ILMN_267796	PARVA	NM_020656.2	NM_020656.2		57341	13569845	NM_020656.2	Parva	NP_065707.2	ILMN_1369439	0003780039	S	999	CATGCAAGATGGAGGGCTGGAAAAGCCTAAACCTCGGCCAGAAGACATTG	1	+	170380229-170380272:170387767-170387772	1q33	Rattus norvegicus parvin, alpha (Parva), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence NAS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IPI]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Actp	Actp
Rattus norvegicus	Unigene	Rn.133548	ILMN_161336	RN.133548	Rn.133548		Rn.133548		11672896	BF563166			ILMN_1530139	0000870020	S	320	TGTGGAGTGTCCAGTTTCTTTTGACCTTGGGGGAGCGACCTAAGGAGGTT					UI-R-BO1-ajf-g-10-0-UI.r1 UI-R-BO1 Rattus norvegicus cDNA clone UI-R-BO1-ajf-g-10-0-UI 5', mRNA					
Rattus norvegicus	RefSeq	GI_8393620-S	ILMN_297112	INSR	NM_017071.1	NM_017071.1		24954	8393620	NM_017071.1	Insr	NP_058767.1	ILMN_1360127	0003130592	S	5344	ACCGAGAGCTTGTGCCCTCGAGAGATTCTCCTCAGTCACGTCAGAACTCG	12	+	3087636-3087685	12p12	Rattus norvegicus insulin receptor (Insr), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IMP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IDA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions involving hydrogen peroxide [goid 10310] [evidence IDA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IMP]; Any virus-induced change in the morphological, biochemical, or growth parameters of a cell [goid 19087] [evidence ISS]; The specification of male sex of an individual organism [goid 30238] [evidence IEA]; The specification of male sex of an individual organism [goid 30238] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; Any process that modulates the DNA-dependent transcription of a specific gene or genes [goid 32583] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of glycolysis [goid 45821] [evidence ISS]; Any process that modulates the frequency, rate or extent of embryonic development [goid 45995] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; Any process that activates, maintains or increases the rate of developmental growth [goid 48639] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated nonidentical subunits [goid 51290] [evidence IEA]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated nonidentical subunits [goid 51290] [evidence ISS]; Any process that increases the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 60267] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA];  [goid 4716] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with insulin to initiate a change in cell activity [goid 5009] [evidence IDA]; Combining with insulin to initiate a change in cell activity [goid 5009] [evidence IEA]; Combining with insulin to initiate a change in cell activity [goid 5009] [evidence IDA]; Combining with insulin to initiate a change in cell activity [goid 5009] [evidence IMP]; Combining with insulin to initiate a change in cell activity [goid 5009] [evidence IDA]; Combining with insulin to initiate a change in cell activity [goid 5009] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any protein phosphatase [goid 19903] [evidence IMP]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with lipoic acid, 1,2-dithiolane-3-pentanoic acid [goid 31405] [evidence IPI]; Interacting selectively with insulin-like growth factor I [goid 31994] [evidence ISS]; Interacting selectively with insulin-like growth factor II [goid 31995] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IEA]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively with a 3-phosphoinositide-dependent protein kinase [goid 43423] [evidence IDA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IEA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence ISS]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IDA]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IEA]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IMP]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IMP]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IDA]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence ISS]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence IEA]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence IMP]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence ISS]; Interacting selectively with a phosphotyrosine-binding (PTB) domain of a protein [goid 51425] [evidence IEA]; Interacting selectively with a phosphotyrosine-binding (PTB) domain of a protein [goid 51425] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647430-S	ILMN_66500	LOC500183	XM_575535.1	XM_575535.1		500183	62647430	XM_575535.1	LOC500183	XP_575535.1	ILMN_1373522	0000540403	S	230	ATAGCTTGCAAAATGGGGTCCCTTCACGGTTTAGTGGCAGTGGATCTGGC				4q31	PREDICTED: Rattus norvegicus similar to NGF-binding Ig light chain (LOC500183), mRNA.			Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718572-S	ILMN_69072	LOC367582	XM_578908.1	XM_578908.1		367582	62718572	XM_578908.1	LOC367582	XP_578908.1	ILMN_1360398	0006290593	S	286	AAGGGAAAGACGCCCATCTTGCAAGTGCCATGGTTGGCCGAGCAGTGGAG					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC367582), mRNA.					
Rattus norvegicus	RefSeq	GI_62654116-S	ILMN_64105	SYNCRIP	XM_343446.3	XM_343446.3		363113	109483771	XM_343446.3	Syncrip	XP_343447.3	ILMN_1350584	0005270377	S	2381	CCCGTGGTAGAGCCGGTTATTCACAGAGAGGAGGCCCTGGATCAGCAAGA	8	-	93730405-93730454	8q31	PREDICTED: Rattus norvegicus synaptotagmin binding, cytoplasmic RNA interacting protein (Syncrip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA [goid 8143] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654099-S	ILMN_63219	CHST2_PREDICTED	XM_345970.3	XM_345970.3		367145	109483794	XM_345970.3	Chst2_predicted	XP_345971.2	ILMN_1361317	0004540408	S	1854	CTGCCAGGTGCCCAGGAATGGAACAAGTCTACGGGCAAAACCAAACAGGG	8	-	100497394-100497443	8q31	PREDICTED: Rattus norvegicus carbohydrate sulfotransferase 2 (predicted) (Chst2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981181-S	ILMN_289017	MAP2	NM_013066.1	NM_013066.1		25595	6981181	NM_013066.1	Map2	NP_037198.1	ILMN_1366653	0002850605	S	5369	ACAGCCAAAAGCTGAACTTCCGAGAGCATGCAAAGGCCCGCGTCGACCAC	9	+	65255641-65255690	9q32	Rattus norvegicus microtubule-associated protein 2 (Map2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Vesicular particles formed from disrupted endoplasmic reticulum membranes and studded with ribosomes on the outside [goid 19718] [evidence IDA]; Vesicular particles formed from disrupted endoplasmic reticulum and plasma membranes without any adhering ribosomes [goid 19719] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IEA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	A process that results in a parallel arrangement of microtubules [goid 1578] [evidence IEA]; A process that results in a parallel arrangement of microtubules [goid 1578] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	MAP2R; Map2	MAP2R; Map2
Rattus norvegicus	RefSeq	GI_62718638-S	ILMN_50617	LOC501442	XM_576852.1	XM_576852.1		501442	62718638	XM_576852.1	LOC501442	XP_576852.1	ILMN_1374696	0005080524	S	1899	GGACCCATACAGGAAAGAAAGCCCATGGAAGAGGCCACACTCACAAGTCA					PREDICTED: Rattus norvegicus similar to zinc finger protein 21 isoform 2 (LOC501442), mRNA.					
Rattus norvegicus	RefSeq	GI_62638772-A	ILMN_283378	ZNF667	NM_001008557.1	NM_001008557.1		308326	56676351	NM_001008557.1	Znf667	NP_001008557.1	ILMN_1376265	0000510121	S	3072	CACAGGCAGGCCATCTGCAAACCAAGGAAAAACCCTCACCAGAACCTGAC	1	-	66034846-66034895	1q12	Rattus norvegicus zinc finger protein 667 (Znf667), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657097-S	ILMN_65347	MPP2	XM_340912.3	XM_340912.3		85275	109489073	XM_340912.3	Mpp2	XP_340913.3	ILMN_1364862	0005050070	S	1549	GTCCCTTACGTGGTGTTCATCGAGGCTCCTGACTTTGAGACTCTGCGGGC	10	-	91127557-91127606	10q32.1	PREDICTED: Rattus norvegicus membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) (Mpp2), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62650851-S	ILMN_282389	GPR33	NM_001031823.1	NM_001031823.1		299007	73532769	NM_001031823.1	Gpr33	NP_001026993.1	ILMN_1359352	0004230195	S	646	GTCATGCTGACTGCTGTCGTCTCTTTCTTTGTGTGTTGGATGCCCTACCA	6	-	72176641-72176690	6q23	Rattus norvegicus G protein-coupled receptor 33 (Gpr33), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Gpr33	Gpr33
Rattus norvegicus	RefSeq	GI_62644536-A	ILMN_274886	MCOLN3	NM_001012059.1	NM_001012059.1		308022	58865683	NM_001012059.1	Mcoln3	NP_001012059.1	ILMN_1376457	0002450438	S	1814	CTGTCGGGTTTCTCTGTGCCTGGGAGGAAAATACAGTGTGTGGATGAGTC	2	+	244311769-244311818	2q44	Rattus norvegicus mucolipin 3 (Mcoln3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61557030-S	ILMN_285059	UNG	NM_001013124.1	NM_001013124.1		304577	61557030	NM_001013124.1	Ung	NP_001013142.1	ILMN_1361057	0005420364	S	1458	TCCTGGGCTCACCAGTGGCTGCTGTCTAGCCTGCTTCTTGGCTCACTTAG	12	-	43520949-43520998	12q16	Rattus norvegicus uracil-DNA glycosylase (Ung), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence TAS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IEA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins [goid 16446] [evidence ISS]; The process by which immunoglobulin genes are formed through recombination of the germline genetic elements, as known as immunoglobulin gene segments, within a single locus [goid 16447] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]	Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine [goid 4844] [evidence IEA]; Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine [goid 4844] [evidence IDA]; Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine [goid 4844] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]	MGC108922	MGC108922
Rattus norvegicus	RefSeq	GI_57012425-S	ILMN_283865	RT1-CE16	NM_001008839.1	NM_001008839.1		414819	57012425	NM_001008839.1	RT1-CE16	NP_001008839.1	ILMN_1373123	0007050114	S	1015	AGGAGAAACACAGGTGGAAAAGTAGGAGTCTACGCCCCTGCTCCAAGCAG	20|NW_047606.1	-	37420-37424:37633-37665:37843-37854		Rattus norvegicus RT1 class I, CE16 (RT1-CE16), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47577258-S	ILMN_271415	OLR726	NM_001000620.1	NM_001000620.1		404812	47577258	NM_001000620.1	Olr726	NP_001000620.1	ILMN_1351684	0000510162	S	447	CCATGGAGGAATACAGATTTTGTTTATGGCCCAGTTACCATTCTGTGGCC	3	+	74412342-74412391	3q24	Rattus norvegicus olfactory receptor 726 (Olr726), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr726	Olr726
Rattus norvegicus	RefSeq	GI_62655566-S	ILMN_290105	RGD1564051_PREDICTED	XM_001053149.1	XM_001053149.1		501206	109492565	XM_001053149.1	RGD1564051_predicted	XP_001053149.1	ILMN_1357441	0003290286	S	888	GAAGGCAAGCTTCCTCAGAGCTCAGGAATGGGCTGCTGAAAGCTAAAGCC				9q38	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L5 (predicted) (RGD1564051_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34872876-S	ILMN_278453	TUSC5	NM_001039163.1	NM_001039163.1		360576	85662384	NM_001039163.1	Tusc5	NP_001034252.1	ILMN_1349203	0003290121	S	1139	CAGCCCACGGCAGACGGAAGGGAAAATCTGGAATGAAGTTGGCCGTGAAC	10	-	67475717-67475766	10q26	Rattus norvegicus tumor suppressor candidate 5 (Tusc5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism [goid 9607] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_6978546-S	ILMN_262836	ATP1A3	NM_012506.1	NM_012506.1		24213	6978546	NM_012506.1	Atp1a3	NP_036638.1	ILMN_1361151	0006660524	S	3229	AGGACAGCCCTCTCCGGTCCCCCATTTTGTACTCTGGGGGGAGGGGCCTT	1	-	80280994-80281043	1q21	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 3 polypeptide (Atp1a3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence IDA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence TAS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage [goid 15077] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in) [goid 19829] [evidence TAS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Atpa1a3	Atpa1a3
Rattus norvegicus	RefSeq	GI_62657614-S	ILMN_265876	RGD1310778_PREDICTED	XM_221670.3	XM_221670.3		288272	62657614	XM_221670.3	RGD1310778_predicted	XP_221670.3	ILMN_1364679	0004150195	S	665	TGCAAGCGAAGCTGTGGGAGGTGGAATCAAAACTGTCCAAGGCTGGCCGG	11	-	30696268-30696317	11q11	PREDICTED: Rattus norvegicus similar to Putative protein C21orf45 (predicted) (RGD1310778_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24308493-S	ILMN_293432	ZFP709	NM_153731.1	NM_153731.1		266773	24308493	NM_153731.1	Zfp709	NP_714953.1	ILMN_1363656	0005290093	S	2259	TCATTCTTAGCATGACAGTGCGTAGGGCAGAGAACCAGGGCCATGTTGTC	16	-	18398369-18398418	16p14	Rattus norvegicus zinc finger protein 709 (Zfp709), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hit40	Hit40
Rattus norvegicus	RefSeq	GI_6978596-S	ILMN_51541	CAMK4	NM_012727.2	NM_012727.2		25050	77404383	NM_012727.2	Camk4	NP_036859.2	ILMN_1349983	0006040309	S	1445	GAAGAGTGTGGAGGAAGAAATGGACCCGAAAGCTGAGGAGGAAGCCGCTG	18	+	25625566-25625615	18p12	Rattus norvegicus calcium/calmodulin-dependent protein kinase IV (Camk4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RATCCDPK; Ccdpk	RATCCDPK; Ccdpk
Rattus norvegicus	RefSeq	GI_62643697-S	ILMN_60422	TRIM2	XM_342268.3	XM_342268.3		361970	109464989	XM_342268.3	Trim2	XP_342269.3	ILMN_1368425	0000540086	S	2165	CAGGTGTAGCCGTGGACTCGAATGGAAACATCATTGTGGCTGACTGGGGG	2	-	175916006-175916055	2q34	PREDICTED: Rattus norvegicus tripartite motif protein 2 (Trim2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639398-S	ILMN_53190	CHST8_PREDICTED	XM_218506.4	XM_218506.4		308511	109458596	XM_218506.4	Chst8_predicted	XP_218506.4	ILMN_1353250	0005690021	S	1454	ACGACGCCAACTTCTTCCTGCGTCTCATCCATGCGCCAGGGAACCTGACA	1	-	87153052-87153101	1q21	PREDICTED: Rattus norvegicus carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 (predicted) (Chst8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639400-S	ILMN_53190	CHST8_PREDICTED	XM_218506.4	XM_218506.4		308511	109458596	XM_218506.4	Chst8_predicted	XP_218506.4	ILMN_1374579	0003060184	S	298	AACCCGTGGCCTGGAAAGCTCCGGTTGTGCCAGATCCCAGCCTGATGGAT	1	-	87229002-87229019:87311215-87311246	1q21	PREDICTED: Rattus norvegicus carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 (predicted) (Chst8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54635061-S	ILMN_286355	OLR1738	NM_001006599.1	NM_001006599.1		406039	54635061	NM_001006599.1	Olr1738	NP_001006599.1	ILMN_1356905	0004920524	S	378	GTGCATCCAGTTGACTGTTGTCATCTGGGCCATTCCTTTTATTCCTGCTC	20	+	1387780-1387829	20p12	Rattus norvegicus olfactory receptor 1738 (Olr1738), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1738; Or12	Olr1738; Or12
Rattus norvegicus	RefSeq	GI_62658670-S	ILMN_62343	LOC501821	XM_577233.1	XM_577233.1		501821	62658670	XM_577233.1	LOC501821	XP_577233.1	ILMN_1365471	0003940487	S	689	GTCCCCTGGATTGGGAGCCCTGAGCCCATTCTGGCCTGGAGGACAAAAGG				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC501821), mRNA.					
Rattus norvegicus	RefSeq	GI_21217558-I	ILMN_269432	KCNC2	NM_139217.1	NM_139217.1		246153	21217558	NM_139217.1	Kcnc2	NP_631963.1	ILMN_1375686	0001500040	I	2276	AATGCCAACCACTTCACTGGACCTTCCTTTCTTGTGACTGACTCCAACCC	7	+	51485261-51485310	7q21	Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 2 (Kcnc2), transcript variant b, mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv3.2; KShIIIA	Kv3.2; KShIIIA
Rattus norvegicus	RefSeq	GI_40018547-S	ILMN_294732	SERPINB6A	NM_199085.1	NM_199085.1		291085	40018547	NM_199085.1	Serpinb6a	NP_954516.1	ILMN_1349114	0006770397	S	1256	AGTGTGTGCCTGTCAGTCTTTTACCCGCTTTGCCTATAACCCAAGTGACC	17	+	37335029-37335078	17p12	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B, member 6a (Serpinb6a), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Serpinb6; MGC72983	Serpinb6; MGC72983
Rattus norvegicus	RefSeq	GI_62659410-S	ILMN_280782	NEK7_PREDICTED	XM_001066105.1	XM_001066105.1		360850	109498723	XM_001066105.1	Nek7_predicted	XP_001066105.1	ILMN_1370799	0004070377	S	1057	CAACCCAGATCCGGAGAAGCGACCGGACATCGCCTACGTTTATGATGTGG				13q13	PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)-related expressed kinase 7 (predicted) (Nek7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078988-S	ILMN_273583	RGD1309708	NM_001014131.1	NM_001014131.1		360867	62078988	NM_001014131.1	RGD1309708	NP_001014153.1	ILMN_1368191	0002320215	S	1593	AGCAGCAGGCTGTCAAAGAGAGAGCGCGGCAGCTCCGACTGGAAGCTCGG	13	+	80053529-80053578	13q22	Rattus norvegicus similar to RIKEN cDNA 4930455F23 (RGD1309708), mRNA.					
Rattus norvegicus	RefSeq	GI_18093097-S	ILMN_281927	P2RX2	NM_053656.2	NM_053656.2		114115	18093097	NM_053656.2	P2rx2	NP_446108.2	ILMN_1354323	0002320541	S	1462	CCTCACTAAACTACAGACCTGGACCTGGGAAGGCAGAGACAGCTTTGGCT	12	+	46487948-46487997	12q16	Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 2 (P2rx2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process by which information about a lack of oxygen are received and are converted to a molecular signal by chemoreceptors in the carotid bodies [goid 3029] [evidence IEA]; The process by which information about a lack of oxygen are received and are converted to a molecular signal by chemoreceptors in the carotid bodies [goid 3029] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus [goid 9743] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract [goid 14832] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IMP]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IMP]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IMP]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IMP]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts [goid 15276] [evidence IDA]; Interacting selectively with nickel (Ni) ions [goid 16151] [evidence IDA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IMP]; Interacting selectively with mercury (Hg) ions [goid 45340] [evidence IDA]; Interacting selectively with cadmium (Cd) ions [goid 46870] [evidence IDA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	P2X2	P2X2
Rattus norvegicus	RefSeq	GI_16758177-S	ILMN_276538	STAU1	NM_053436.1	NM_053436.1		84496	16758177	NM_053436.1	Stau1	NP_445888.1	ILMN_1359122	0000460332	S	2661	CAATACAGTCAATCCCAGCCTCCACGTAGGGAAGGGCGACAGGTTTCCTG	3	-	158101558-158101607	3q42	Rattus norvegicus staufen RNA binding protein homolog 1 (Drosophila) (Stau1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	Any process by which mRNA is transported to, or maintained in, a specific location within the cell [goid 8298] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IDA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the enzyme protein phosphatase 1 [goid 8157] [evidence IPI]	Stau; MGC124588	Stau; MGC124588
Rattus norvegicus	RefSeq	GI_62651027-S	ILMN_66602	RGS6	XM_345702.2	XM_345702.2		54295	62651027	XM_345702.2	Rgs6	XP_345703.2	ILMN_1351357	0002810070	S	5826	GTAGCCCATGATGGAGACAGAGCAGGGATCAGTGTGTCTTCCTCTTCCTC				6q24	PREDICTED: Rattus norvegicus regulator of G-protein signaling 6 (Rgs6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45744] [evidence NAS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62658128-S	ILMN_50917	LOC287992	XM_237832.3	XM_237832.3		287992	62658128	XM_237832.3	LOC287992	XP_237832.3	ILMN_1358221	0004480315	S	852	GCTGAGAACACCAACCAAGAGCTGACGCACTTTGGGAGAAGAGCAGCAGG					PREDICTED: Rattus norvegicus hypothetical LOC287992 (LOC287992), mRNA.					
Rattus norvegicus	RefSeq	GI_62665769-S	ILMN_65279	LOC497745	XM_579502.1	XM_579502.1		497745	62665769	XM_579502.1	LOC497745	XP_579502.1	ILMN_1361079	0003190181	S	2804	CACCAACTCCCTTAATAAACAGACCCTGGGCTGATGGCCCAGTAGTAAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031049 (LOC497745), mRNA.					
Rattus norvegicus	RefSeq	GI_62661249-I	ILMN_69619	PLEKHC1_PREDICTED	XM_573747.1	XM_573747.1		289992	62661249	XM_573747.1	Plekhc1_predicted	XP_573747.1	ILMN_1376131	0005720114	S	187	GAGCCTGCACGCATATCGATGGGGATGATCGGAAGCAGCAGATGTCAATC				15p14	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family C (with FERM domain) member 1 (predicted) (Plekhc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659046-S	ILMN_265418	CORO1C_PREDICTED	XM_001080435.1	XM_001080435.1		304580	109497507	XM_001080435.1	Coro1c_predicted	XP_001080435.1	ILMN_1370109	0000510008	S	2979	TAGGAACCCCTCTGCGACCTCCAAACCATCAGGGAAATCCGCCCCAGAGA				12q16	PREDICTED: Rattus norvegicus coronin, actin binding protein 1C (predicted) (Coro1c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645893-S	ILMN_57836	HSPA12B_PREDICTED	XM_230610.4	XM_230610.4		311427	109468847	XM_230610.4	Hspa12b_predicted	XP_230610.3	ILMN_1366436	0000630398	S	2031	CCCAGCCGCCGTGAGATCCGTGCTGCCATGCAGTTTGGAGATACTGAGAT	3	+	118850150-118850199	3q36	PREDICTED: Rattus norvegicus heat shock protein 70kDa 12B (predicted) (Hspa12b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34933022-S	ILMN_269636	RGD1563086_PREDICTED	XM_001062976.1	XM_001062976.1		367699	109512513	XM_001062976.1	RGD1563086_predicted	XP_001062976.1	ILMN_1358600	0000780685	S	1322	CAGTCAAAGAGAAGAAGGCATGGGGCAATCAGGGAGGACAAGGCAATGGC				Xq12	PREDICTED: Rattus norvegicus similar to hypothetical protein A630014H24 (predicted) (RGD1563086_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639270-S	ILMN_281628	LOC687212	XM_001077535.1	XM_001077535.1		687212	109461502	XM_001077535.1	LOC687212	XP_001077535.1	ILMN_1373547	0005050736	S	553	CACCAGACTTCTGTGCTCTCTCACTTCTTTGATGGCACCGAGACCACCAG					PREDICTED: Rattus norvegicus similar to Cytochrome P450 2B12 (CYPIIB12) (LOC687212), mRNA.			Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647046-S	ILMN_265039	HIPK2_PREDICTED	XM_001066856.1	XM_001066856.1		362342	109473291	XM_001066856.1	Hipk2_predicted	XP_001066856.1	ILMN_1355735	0005910056	S	3842	GCACACAAACAATGCAAATGGGGCAGGGAGGGGGGCAGTTGGGGCACAAA				4q22	PREDICTED: Rattus norvegicus homeodomain interacting protein kinase 2 (predicted), transcript variant 6 (Hipk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638343-A	ILMN_263471	AKAP7	NM_001001801.2	NM_001001801.2		361458	70778847	NM_001001801.2	Akap7	NP_001001801.1	ILMN_1376565	0006620142	S	1129	GCTGAGGAGGGAGATCGGAATGGCGATGGCAGTGATAACAACCGGAAGTG	1	+	20704549-20704564:20704565-20704598	1p12	Rattus norvegicus A kinase (PRKA) anchor protein 7 (Akap7), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]	Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence TAS]; The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence TAS]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence ISS]	Akap18; Akap15; AKAP18d; MGC112559	Akap18; Akap15; AKAP18d; MGC112559
Rattus norvegicus	RefSeq	GI_62649470-S	ILMN_53213	MMACHC_PREDICTED	XM_233418.4	XM_233418.4		313520	109475265	XM_233418.4	Mmachc_predicted	XP_233418.2	ILMN_1354659	0000780044	S	771	GCTTAGCCCAACCCTCAGGACACCCTAGCACTACATCCGAGCATCCTCTT	5	-	136996175-136996224	5q36	PREDICTED: Rattus norvegicus methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria (predicted) (Mmachc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543895-S	ILMN_293977	TSC2	NM_012680.2	NM_012680.2		24855	31543895	NM_012680.2	Tsc2	NP_036812.2	ILMN_1373092	0000520411	S	5432	TACGGAGGCTACACCCACCTACGAGACAGGCCAGCGGAAACGCCTCATTT	10	-	13848381-13848430	10q12	Rattus norvegicus tuberous sclerosis 2 (Tsc2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway [goid 33596] [evidence IEA]; A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway [goid 33596] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IMP]; Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice [goid 44430] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway [goid 33596] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14067] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14067] [evidence ISS]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the TOR signaling pathway [goid 32007] [evidence IDA]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 32956] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IMP]; A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B, which occurs as a result of a single trigger reaction or compound [goid 43491] [evidence ISS]; The directed movement of a protein to a specific location [goid 45184] [evidence IMP]; Any process that modulates the frequency, rate or extent of insulin receptor signaling [goid 46626] [evidence IEA]; Any process that modulates the frequency, rate or extent of insulin receptor signaling [goid 46626] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IDA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a higher concentration, in a concentration gradient of a specific chemical [goid 50918] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a higher concentration, in a concentration gradient of a specific chemical [goid 50918] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IMP]; Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51492] [evidence IMP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IMP]; Any process that modulates the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51893] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14067] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IEA]; Any process that modulates the frequency, rate or extent of insulin receptor signaling [goid 46626] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a higher concentration, in a concentration gradient of a specific chemical [goid 50918] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IDA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence ISS]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the rate of GTP hydrolysis by a GTPase [goid 30695] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	Rc	Rc
Rattus norvegicus	RefSeq	GI_62664052-S	ILMN_53246	LOC307582	XM_226159.3	XM_226159.3		307582	62664052	XM_226159.3	LOC307582	XP_226159.3	ILMN_1350850	0004050433	S	12825	AGGGAAGTGCAGAATTGCCCTGTACCTGCCAGGCTCGTCAATGCCTCAGC				18p13	PREDICTED: Rattus norvegicus similar to laminin-5 alpha 3 chain (LOC307582), mRNA.					
Rattus norvegicus	RefSeq	GI_57012431-S	ILMN_301548	KA11	NM_001008750.1	NM_001008750.1		450226	57012431	NM_001008750.1	Ka11	NP_001008750.1	ILMN_1360403	0001410167	S	774	TCAAAGCCTCACAGAGGAGCTGGCCGCCCTGAATAGGAATCACCAGGAGG	10	-	89169087-89169088:89169173-89169220	10q32.1	Rattus norvegicus type I keratin KA11 (Ka11), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656517-S	ILMN_53855	LOC497951	XM_573137.1	XM_573137.1		497951	62656517	XM_573137.1	LOC497951	XP_573137.1	ILMN_1353200	0003850136	S	2936	TCTCTCAGGAGACATCCATATCTAGCTTCTGTCAGCATGCACTTCTTGGC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC497951), mRNA.					
Rattus norvegicus	RefSeq	GI_50657371-A	ILMN_294789	H2-T3	NM_001002821.1	NM_001002821.1		406194	50657371	NM_001002821.1	H2-T3	NP_001002821.1	ILMN_1376266	0003520170	S	976	GACTGGAGGTGCTGTGATGTGCATGAGAAAGAACAAGGGAGGAGACAGAG	20	+	2757882-2757919:2758275-2758286	20p12	Rattus norvegicus histocompatibility 2, T region locus 3 (H2-T3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1-T18; RanoTL; TL antigen; Tla	RT1-T18; RanoTL; TL antigen; Tla
Rattus norvegicus	RefSeq	GI_62641543-S	ILMN_294011	EBF3_PREDICTED	XM_001056705.1	XM_001056705.1		361668	109463080	XM_001056705.1	Ebf3_predicted	XP_001056705.1	ILMN_1371652	0005700180	S	3888	CTGCCCAGTGTTGAAGCATAGGGAACGAGCAGACACCAAGAGCTTGTCTC				1q41	PREDICTED: Rattus norvegicus early B-cell factor 3 (predicted) (Ebf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642077-S	ILMN_49998	LOC365436	XM_577860.1	XM_577860.1		365436	62642077	XM_577860.1	LOC365436	XP_577860.1	ILMN_1357235	0002630168	S	110	AAAGTATGTGGCTACTCTGGGTGTGAAGGTGCCCCCGCTCGTCTTCCAGA					PREDICTED: Rattus norvegicus similar to RAN, member RAS oncogene family (LOC365436), mRNA.					
Rattus norvegicus	RefSeq	GI_62644015-S	ILMN_268901	LOC681982	XM_001059200.1	XM_001059200.1		681982	109467172	XM_001059200.1	LOC681982	XP_001059200.1	ILMN_1364133	0007050025	S	861	GGCTGGGTTTCGGGAGAAGATCCACCACCTGGATGACATGCTGAAGAGCC					PREDICTED: Rattus norvegicus similar to Tuftelin (LOC681982), mRNA.					
Rattus norvegicus	RefSeq	GI_62663620-S	ILMN_287200	LOC682056	XM_001059607.1	XM_001059607.1		682056	109505938	XM_001059607.1	LOC682056	XP_001059607.1	ILMN_1364933	0003850215	S	771	CATGTATTTACAACCCGGTAACAGGGCCTCTAAGGACCAAGGCAAGTTCC					PREDICTED: Rattus norvegicus similar to olfactory receptor 42 (LOC682056), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652649-S	ILMN_56952	LOC300049	XM_216945.3	XM_216945.3		300049	62652649	XM_216945.3	LOC300049	XP_216945.3	ILMN_1366761	0002690072	S	3693	TCCTGGAGAAGATGAGCAAAGATGTCCCATTCAAGGAGAGCCGGGCCTTC					PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC300049), mRNA.					
Rattus norvegicus	RefSeq	GI_62652097-S	ILMN_51931	RGD1561474_PREDICTED	XM_243478.4	XM_243478.4		314824	109480509	XM_243478.4	RGD1561474_predicted	XP_243478.4	ILMN_1367743	0001740463	S	2786	GTGGCAAAAGGCTATTCTTCCCCAGAGCCTGACGTCCAGGATTCTTCTGG	7	+	50309104-50309153	7q21	PREDICTED: Rattus norvegicus similar to oxysterol-binding protein-like protein 8 isoform a (predicted) (RGD1561474_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928879-S	ILMN_286295	PGCP	NM_031640.1	NM_031640.1		58952	13928879	NM_031640.1	Pgcp	NP_113828.1	ILMN_1358687	0001940079	S	1484	GGGCTGTTGTCGCTTACGTTGTGGCAGACATGGAGGAAATGCTGCCCAGG	7	+	68900206-68900255	7q22	Rattus norvegicus plasma glutamate carboxypeptidase (Pgcp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	lal-1; LAL	lal-1; LAL
Rattus norvegicus	RefSeq	GI_62665303-S	ILMN_65107	LOC498954	XM_574243.1	XM_574243.1		498954	62665303	XM_574243.1	LOC498954	XP_574243.1	ILMN_1351402	0005360148	S	92	CATGTGCCGACAGTGCTTCCGAGCTCGTGTTCATACTTGTAGCTATGCGG				19q12	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (LOC498954), mRNA.					
Rattus norvegicus	RefSeq	GI_62656004-S	ILMN_66339	TRIM41_PREDICTED	XM_220357.4	XM_220357.4		303088	109487995	XM_220357.4	Trim41_predicted	XP_220357.3	ILMN_1369219	0006760471	S	3505	GTTACATGTGGTTAGCCCTGTTAGGGGAGCTCGGGACAGGGGTCTGGATC	10	-	34073153-34073202	10q21	PREDICTED: Rattus norvegicus tripartite motif protein 41 (predicted) (Trim41_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652429-S	ILMN_284441	RGD1561030_PREDICTED	XM_001066889.1	XM_001066889.1		314979	109482228	XM_001066889.1	RGD1561030_predicted	XP_001066889.1	ILMN_1373754	0003610064	S	1185	TGGTGACGCAGTTGGCTGGGGCTTTGTGGTTCGAGGAAGTAAACCATGCC				7q31	PREDICTED: Rattus norvegicus similar to DEP domain containing 6 (predicted) (RGD1561030_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656741-S	ILMN_263023	RNF43_PREDICTED	XM_001081171.1	XM_001081171.1		303412	109491597	XM_001081171.1	Rnf43_predicted	XP_001081171.1	ILMN_1352921	0002370025	S	2164	CAGCCAGTGTGGTTGTATCTGAATCCCCGCCAGCCTCTGGGACCATGCTT				10q26	PREDICTED: Rattus norvegicus ring finger protein 43 (predicted) (Rnf43_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645621-S	ILMN_67743	NDUFAF1_PREDICTED	XM_215814.4	XM_215814.4		296086	109468681	XM_215814.4	Ndufaf1_predicted	XP_215814.3	ILMN_1374974	0005550097	S	1190	AAGACAGGAAGTACAGCATGGCCTCTCAGTGGAGTCTCCTGGAAGTTCTT	3	-	106171450-106171499	3q35	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 (predicted) (Ndufaf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605793-S	ILMN_265067	LOC353306	NM_001008359.1	NM_001008359.1		353306	56605793	NM_001008359.1	LOC353306	NP_001008360.2	ILMN_1367961	0006040129	S	2957	AGCCAGAAACCACAGATCCTACGGAACCCCCGTCACATGTACCCCAAGTC	17	-	5716797-5716846	17p14	Rattus norvegicus vitamin A-deficient testicular protein 11-like (LOC353306), mRNA.				MGC94993; Aep1	MGC94993; Aep1
Rattus norvegicus	RefSeq	GI_27731748-S	ILMN_293672	RPL36A_PREDICTED	XM_001068688.1	XM_001068688.1		292964	109512330	XM_001068688.1	Rpl36a_predicted	XP_001068688.1	ILMN_1368842	0005390451	S	515	GACTTGTCATTGGGTTCCCTACTTGGTGTTTAGAATCCACAGGCTGCTGC				Xq34	PREDICTED: Rattus norvegicus ribosomal protein L36a (predicted) (Rpl36a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653191-S	ILMN_297117	MGC105560	NM_001024357.1	NM_001024357.1		500941	66730510	NM_001024357.1	MGC105560	NP_001019528.1	ILMN_1373488	0000060164	S	1617	GGGTGTAAGCTGCTACCAGCCACAGTAGAGGCTACAGGTTCTGCTACACA	8	+	920408-920457	8q11	Rattus norvegicus similar to Hypothetical protein BC014729 (MGC105560), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62641020-S	ILMN_286464	MRPL48_PREDICTED	XM_001067066.1	XM_001067066.1		293149	109462509	XM_001067066.1	Mrpl48_predicted	XP_001067066.1	ILMN_1353002	0006400253	S	558	CTCAGTCCTTACTACCCATGAACGAGTGGTGCAGATCAGCGGTCTGAGCG				1q32	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L48 (predicted) (Mrpl48_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27693121-S	ILMN_64876	EFNA4_PREDICTED	XM_227416.2	XM_227416.2		310643	109465086	XM_227416.2	Efna4_predicted	XP_227416.1	ILMN_1350274	0002650520	S	556	ACAGATCCGAGTCAGCTCATCCTGTCGGGAGCCCTGGAGAAAGTGGCACA	2	-	181521882-181521929:181522272-181522273	2q34	PREDICTED: Rattus norvegicus ephrin A4 (predicted) (Efna4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663011-S	ILMN_65272	LOC502100	XM_577540.1	XM_577540.1		502100	62663011	XM_577540.1	LOC502100	XP_577540.1	ILMN_1373343	0006550273	S	3334	TCACACTCAGCGCCTGGTGCACCTCTCTGGTGTCACACTCAGCTTCTGGT					PREDICTED: Rattus norvegicus LOC502100 (LOC502100), mRNA.					
Rattus norvegicus	RefSeq	GI_62661548-S	ILMN_48732	TTC10_PREDICTED	XM_224165.3	XM_224165.3		305918	62661548	XM_224165.3	Ttc10_predicted	XP_224165.3	ILMN_1355774	0002640672	S	2552	TCCGCAGGCTCTGACCAGAGATAGTGGCCAGAACAGTAGTGCCAGTAGTA				15p12	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 10 (predicted) (Ttc10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742703-S	ILMN_299902	OAS1A	NM_138913.1	NM_138913.1		192281	25742703	NM_138913.1	Oas1a	NP_620268.1	ILMN_1362908	0001740082	S	1068	TTCCCCAGTGAGTTCCTGGGAAGTGCCGGTGGATGAGGCCTGGTCATGCA	12	+	36815104-36815127:36816414-36816439	12q16	Rattus norvegicus 2'-5' oligoadenylate synthetase 1A (Oas1a), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of the viral life cycle, the set of processes by which a virus reproduces and spreads among hosts [goid 48525] [evidence ISS]	Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence IDA]; Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]	Oas1g; MGC93097	Oas1g; MGC93097
Rattus norvegicus	RefSeq	GI_61098211-S	ILMN_59952	UCHL1	NM_017237.2	NM_017237.2		29545	61098211	NM_017237.2	Uchl1	NP_058933.2	ILMN_1366416	0004070242	S	707	TCTCTGCAAAGCAGCCTAAGTAGGGAGAGAGAACCAGCCGCTCCCCCATC	14	-	44114662-44114697:44114698-44114711	14p11	Rattus norvegicus ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) (Uchl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process by which an axon recognizes and binds to a set of cells with which it may form stable connections [goid 7412] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The removal of one or more ubiquitin moieties from a protein [goid 16579] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IDA]; The directed movement of mitochondria along microtubules in nerve cell axons [goid 19896] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence ISS]; Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Catalysis of the removal of terminal peptide residues that are substituted, cyclized or linked by isopeptide bonds (peptide linkages other than those of alpha-carboxyl to alpha-amino groups) [goid 8242] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642321-S	ILMN_58567	COX15_PREDICTED	XM_219882.3	XM_219882.3		309391	62642321	XM_219882.3	Cox15_predicted	XP_219882.2	ILMN_1370841	0002760450	S	2426	CCAAAGATCACATGACGGTTTTATGGCCACCCCAAGCACGTGGCAACCCG				1q54	PREDICTED: Rattus norvegicus COX15 homolog, cytochrome c oxidase assembly protein (yeast) (predicted) (Cox15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664627-S	ILMN_51579	CXXC1	XM_238016.4	XM_238016.4		291440	109506750	XM_238016.4	Cxxc1	XP_238016.3	ILMN_1368539	0003450167	S	2276	ACTACCGACCTTCGCTCTAGTGCTGACCGCTGAAAGTCACCAGCCCAGAG	18	+	71011640-71011672:71011673-71011689	18q12.2	PREDICTED: Rattus norvegicus CXXC finger 1 (PHD domain) (Cxxc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters [goid 45322] [evidence ISS]; Interacting selectively with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters [goid 45322] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659820-S	ILMN_48039	LOC364048	XM_577289.1	XM_577289.1		364048	62659820	XM_577289.1	LOC364048	XP_577289.1	ILMN_1363139	0002850154	S	34	GTGCCTCCGTGCCAGAGGGGTTTCTCTCCAAACTCTCCCAGCAGCTGACA					PREDICTED: Rattus norvegicus similar to macrophage migration inhibitory factor (LOC364048), mRNA.					
Rattus norvegicus	RefSeq	GI_62644303-S	ILMN_266426	ARSJ	XM_001076005.1	XM_001076005.1		311013	109467591	XM_001076005.1	Arsj	XP_001076005.1	ILMN_1354946	0001770075	S	2531	CTGTCAGGTACCCCCCGAAGGATCCCAGAAGCAACCCTAGGCTCAACGGA				2q42	PREDICTED: Rattus norvegicus arylsulfatase J (Arsj), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2 [goid 8484] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647273-S	ILMN_59105	RGD1564419_PREDICTED	XM_575480.2	XM_575480.2		500128	109472042	XM_575480.2	RGD1564419_predicted	XP_575480.1	ILMN_1365527	0004560450	S	421	ACTAGGGGTAAGAGCACACCGGAAGGCCAAGTCCGAGTTCCAGTCCTAGA	4	+	80549425-80549474	4q24	PREDICTED: Rattus norvegicus similar to hypothetical gene supported by BC025338 (predicted) (RGD1564419_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661835-S	ILMN_280629	SLITRK6_PREDICTED	XM_001077765.1	XM_001077765.1		290467	109502931	XM_001077765.1	Slitrk6_predicted	XP_001077765.1	ILMN_1359471	0003850673	S	4045	AGCAAAAGGCACTTCTAAAGGTAAGTGTTCTGAGTTGCCTCAGGAGAGGG				15q23	PREDICTED: Rattus norvegicus SLIT and NTRK-like family, member 6 (predicted) (Slitrk6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929053-S	ILMN_67812	SHANK1	NM_031751.2	NM_031751.2		78957	77627980	NM_031751.2	Shank1	NP_113939.2	ILMN_1373188	0002370747	S	6788	GCAAGAGGTGGGCAGCTGACACAAGACTGCAAGTGGAGTAGATGGGGGAT	1	+	94839788-94839837	1q22	Rattus norvegicus SH3/ankyrin domain gene 1 (Shank1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [pmid 10551867] [evidence NAS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [pmid 10551867] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [pmid 10551867] [evidence NAS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Process by which cytoskeletal filaments are directly or indirectly linked to the plasma membrane [goid 7016] [pmid 10551867] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Functions to provide a physical support for the assembly of a multiprotein receptor signaling complex [goid 30159] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10551867] [evidence IPI]	Spank1; Shank1a; Sstrip	Spank1; Shank1a; Sstrip
Rattus norvegicus	RefSeq	GI_62657083	ILMN_289778	RGD1561590_PREDICTED	XR_009468.1	XR_009468.1		498002	109491936	XR_009468.1	RGD1561590_predicted		ILMN_1649787	0002510113	S	7	CTCATGCTCGCCGCAGGGGTCGGAGGTCAGGGCGAGCGTCTCCCGGGCCG					PREDICTED: Rattus norvegicus similar to SAP18 (predicted) (RGD1561590_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656342-S	ILMN_268658	RGD1560902_PREDICTED	XR_009596.1	XR_009596.1		363635	109491140	XR_009596.1	RGD1560902_predicted		ILMN_1374565	0001740128	S	556	TGCTGCACCCTGGCAGAAAAACTAGGTGGCATCTTCCTGGAGCACAAGCC				10q24	PREDICTED: Rattus norvegicus similar to Cofilin, non-muscle isoform (Cofilin-1) (predicted) (RGD1560902_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663285-S	ILMN_285288	RGD1562047_PREDICTED	XM_001054024.1	XM_001054024.1		498709	109505504	XM_001054024.1	RGD1562047_predicted	XP_001054024.1	ILMN_1365004	0006020195	S	408	GTCCGAAGAGGAGTGGAGGAGACTTGGTGTTCAACAGAGTCTAGGATGGG				17p14	PREDICTED: Rattus norvegicus similar to Cyclin-dependent kinases regulatory subunit 2 (CKS-2) (predicted) (RGD1562047_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605809	ILMN_277155	ISOC2B	NM_001008367.1	NM_001008367.1		361501	56605809	NM_001008367.1	Isoc2b	NP_001008368.1	ILMN_1650489	0003990600	S	726	AGGCCCTGACTTGAAGGAAGCACCCACCCTCCTTGTCACCCAGACGTTGA	1	+	67709941-67709949:67709950-67709990	1q12	Rattus norvegicus isochorismatase domain containing 2b (Isoc2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that decreases the stability of a protein, making it more vulnerable to degradative processes or aggregation [goid 31648] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1309062; MGC105521	RGD1309062; MGC105521
Rattus norvegicus	RefSeq	GI_62659186-S	ILMN_51091	LOC498215	XM_573433.1	XM_573433.1		498215	62659186	XM_573433.1	LOC498215	XP_573433.1	ILMN_1373808	0003870551	S	713	GATAATAGGTATAGAAGAGAGTGAAGACTCCCAAACAGGACAACTCCAAG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498215), mRNA.					
Rattus norvegicus	RefSeq	GI_62649305-S	ILMN_276673	TCTEX1D1_PREDICTED	XM_001063024.1	XM_001063024.1		362553	109476853	XM_001063024.1	Tctex1d1_predicted	XP_001063024.1	ILMN_1360719	0000540113	S	500	GGTCCACGTGTCCCGAAATCATGAAACAGGCTGGGTGTCTCTATCCACAA				5q34	PREDICTED: Rattus norvegicus Tctex1 domain containing 1 (predicted) (Tctex1d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663036-S	ILMN_68154	LOC364650	XM_344553.2	XM_344553.2		364650	62663036	XM_344553.2	LOC364650	XP_344554.2	ILMN_1371884	0003780524	S	403	GCAGCATCAAAGAAGAGACACCCACCTGTGCCGTCTCCATCCAGACTCGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A230063L24 gene (LOC364650), mRNA.					
Rattus norvegicus	RefSeq	GI_57528245-S	ILMN_279748	KIF22	NM_001009645.1	NM_001009645.1		293502	57528245	NM_001009645.1	Kif22	NP_001009645.1	ILMN_1358183	0002480672	S	1773	TTGCATCTGCTGAATGAAGGCTCAGCTCGGGATCTGCGAAGCCTGCAGCG	1	-	186205591-186205640	1q36	Rattus norvegicus kinesin family member 22 (Kif22), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC95045	MGC95045
Rattus norvegicus	RefSeq	GI_62664646	ILMN_52660	LOC498887	XM_574175.1	XM_574175.1		498887	62664646	XM_574175.1	LOC498887	XP_574175.1	ILMN_1650604	0006660128	S	1025	GGTGGTTGGTGTGTGCGAGCATCCCGGGCAGGCAGAAAGAAAACAGTGAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (LOC498887), mRNA.					
Rattus norvegicus	RefSeq	GI_62654530-S	ILMN_297358	RGD1566004_PREDICTED	XR_009228.1	XR_009228.1		301077	109485626	XR_009228.1	RGD1566004_predicted		ILMN_1365797	0005860280	S	338	CTGAAGCGGCTGAAGGAGAACGATCCAAAGAGAAGGGCACCTGGGTTTGG				8q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1566004_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018577-S	ILMN_280981	MGC72614	NM_199105.1	NM_199105.1		310540	40018577	NM_199105.1	MGC72614	NP_954536.1	ILMN_1375177	0001340066	S	3466	CTGAGGCCAGTCCGGTTCATAGTGACATCCTGTCTGAAATGTGCCCCTCC	2	+	171432694-171432743	2q33	Rattus norvegicus hypothetical LOC310540 (MGC72614), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_8394285-S	ILMN_63007	SLC1A2	NM_017215.2	NM_017215.2		29482	78126166	NM_017215.2	Slc1a2	NP_058911.2	ILMN_1367947	0003520731	S	1604	CCGAGCTGGACACCATTGACTCCCAACACCGAATGCACGAAGACATCGAA	3	+	87988265-87988314	3q31	Rattus norvegicus solute carrier family 1 (glial high affinity glutamate transporter), member 2 (Slc1a2), transcript variant 1, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness [goid 30673] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence TAS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; The inherent decline of a multicellular organism over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 10259] [evidence ISS]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IEA]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IMP]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence ISS]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence ISS]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + H+(out) = glutamate(in) + H+(in) [goid 5314] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + H+(out) = glutamate(in) + H+(in) [goid 5314] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + Na+(out) = glutamate(in) + Na+(in) [goid 15501] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + Na+(out) = glutamate(in) + Na+(in) [goid 15501] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]	GLT-1; Eaat2; GluT; Glt; Glt-1; GluT-R	GLT-1; Eaat2; GluT; Glt; Glt-1; GluT-R
Rattus norvegicus	RefSeq	GI_47777741	ILMN_272987	OLR1093	NM_001001388.1	NM_001001388.1		366844	47777741	NM_001001388.1	Olr1093	NP_001001388.1	ILMN_1649810	0002190088	S	461	GTGGCTCAGTCATGGGGACAGTGGTGACAACAGCCATTTTCAACCTTACG	7	-	14175824-14175873	7q11	Rattus norvegicus olfactory receptor 1093 (Olr1093), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1093	Olr1093
Rattus norvegicus	RefSeq	GI_47577952-S	ILMN_290380	OLR111	NM_001000742.1	NM_001000742.1		405006	47577952	NM_001000742.1	Olr111	NP_001000742.1	ILMN_1355978	0000130133	S	693	ACCTTCTCAAAGTGCCCAACTCAAGGCTCTGGGTACGTGTGGCTCCCATG	1	+	161319363-161319412	1q32	Rattus norvegicus olfactory receptor 111 (Olr111), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr111	Olr111
Rattus norvegicus	RefSeq	GI_31342016-S	ILMN_291857	CYP26B1	NM_181087.2	NM_181087.2		312495	31342016	NM_181087.2	Cyp26b1	NP_851601.1	ILMN_1363580	0002470161	S	4097	AAGTTAGACGCTGGCGTGTGCATTCTGGGCAACCGTTTTGACCCTGCCCA	4	-	118735189-118735238	4q34	Rattus norvegicus cytochrome P450, family 26, subfamily b, polypeptide 1 (Cyp26b1), mRNA.		Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle in the male germline [goid 7140] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle in the male germline [goid 7140] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of retinoic acid, one of the three components that makes up vitamin A [goid 34653] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEA]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence ISS]	Interacting selectively with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid [goid 1972] [evidence ISS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA];  [goid 8401] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657048-S	ILMN_62603	RGD1310093_PREDICTED	XM_220978.4	XM_220978.4		303538	109489022	XM_220978.4	RGD1310093_predicted	XP_220978.4	ILMN_1372498	0003990358	S	1999	CATGCTTCTGGAGACCCCTCACGGGAAGATCCAGGCCAAAAAGTGGTCCC	10	-	89630556-89630605	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11354 (predicted) (RGD1310093_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652711-S	ILMN_60257	RGD1564842_PREDICTED	XM_576307.2	XM_576307.2		500906	109480977	XM_576307.2	RGD1564842_predicted	XP_576307.1	ILMN_1355232	0001690736	S	1091	CATGCAAGACGGACGGGGATGGCAAGGTGGTGGAAGGCAAACACGAATCC	7	+	116579971-116580020	7q34	PREDICTED: Rattus norvegicus similar to cytohesin-4 (predicted) (RGD1564842_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650929-S	ILMN_61616	LOC500683	XM_576063.1	XM_576063.1		500683	62650929	XM_576063.1	LOC500683	XP_576063.1	ILMN_1373751	0001050537	S	809	TGTTGTCAGTAGGGACTGTGAGGGTCTGGTCATGATGCACATGCGTCAGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC500683), mRNA.					
Rattus norvegicus	RefSeq	GI_62658253-S	ILMN_58322	PKP2	XM_213560.4	XM_213560.4		287925	109493669	XM_213560.4	Pkp2	XP_213560.4	ILMN_1369107	0000130605	S	1516	CTTGCCAGGTCGCACCAGTGTGGAATCCGTGTTCCCTGTGCAGATGATGG	11	+	86584212-86584261	11q23	PREDICTED: Rattus norvegicus plakophilin 2 (Pkp2), mRNA.	A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence IEA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]	The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666127-S	ILMN_59576	HDAC2	XM_342149.3	XM_342149.3		84577	109509581	XM_342149.3	Hdac2	XP_342150.2	ILMN_1355097	0005390164	S	1696	GCCAGGATTGAGGAAGACAAGAAGGAGGCGGAGGACAAGAGGACAGATGT	20	+	41183461-41183506:41185353-41185356	20q12	PREDICTED: Rattus norvegicus histone deacetylase 2 (Hdac2), mRNA.	A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence ISS]	The modification of histones by removal of acetyl groups [goid 16575] [evidence ISS]; The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654132-S	ILMN_64900	LOC497832	XM_579562.1	XM_579562.1		497832	62654132	XM_579562.1	LOC497832	XP_579562.1	ILMN_1373735	0006370441	S	3205	CCTCGCAGAGGTACCTCTTAGGCATTTGGCTAGTTTAGCTTTTCCTTCTA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053558 (LOC497832), mRNA.					
Rattus norvegicus	RefSeq	GI_62660167-S	ILMN_299970	ARD1B	NM_001024742.1	NM_001024742.1		289482	67078531	NM_001024742.1	Ard1b	NP_001019913.1	ILMN_1360167	0005720133	S	1341	TCCAGTGGGAAAACGGGACAAAGAAGGGCTCCACCACCCCTTACAAGCAG	14	+	13641202-13641251	14p22	Rattus norvegicus ARD1 homolog B (S. cerevisiae) (Ard1b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the acetylation of the N-terminal amino acid residue of a peptide or protein, according to the reaction: acetyl-CoA + peptide = CoA + N-alpha-acetylpeptide [goid 4596] [evidence IEA]; Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657681-S	ILMN_62605	BRWD1_PREDICTED	XM_221627.4	XM_221627.4		304061	109492864	XM_221627.4	Brwd1_predicted	XP_221627.4	ILMN_1351401	0001340152	S	6746	GCGCATTAGAGCTCACTGACCGCACCTTACGACCTTGAGAGCCAGTGTGC	11	-	36303869-36303881:36303882-36303918	11q11	PREDICTED: Rattus norvegicus bromodomain and WD repeat domain containing 1 (predicted) (Brwd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659440-S	ILMN_48130	TROVE2_PREDICTED	XM_222686.4	XM_222686.4		304833	109497953	XM_222686.4	Trove2_predicted	XP_222686.3	ILMN_1373977	0000520201	S	1603	GCTTTACGATCGCAGACCCAGACGATAGAGGCATGTTGGATATGTGCGGC	13	-	57586682-57586731	13q21	PREDICTED: Rattus norvegicus TROVE domain family, member 2 (predicted) (Trove2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643239-S	ILMN_61061	SMARCA3_PREDICTED	XM_215728.4	XM_215728.4		295568	109464649	XM_215728.4	Smarca3_predicted	XP_215728.4	ILMN_1357379	0002630309	S	3091	TGTGCAGCTTCTCGAGTGTTCTTAATGGACCCAGCCTGGAATCCTGCTGC	2	+	105254614-105254646:105255989-105256005	2q24	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 (predicted) (Smarca3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643241-S	ILMN_61061	SMARCA3_PREDICTED	XM_215728.4	XM_215728.4		295568	109464649	XM_215728.4	Smarca3_predicted	XP_215728.4	ILMN_1373107	0000110309	S	4728	GGAGGGTAGGAAGTGGAATAACTGGGATTGGCCTGCTGGGGGTAGTAGCC	2	+	105261791-105261840	2q24	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 (predicted) (Smarca3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639427-S	ILMN_262449	ZFP537_PREDICTED	XM_001079868.1	XM_001079868.1		308523	109461763	XM_001079868.1	Zfp537_predicted	XP_001079868.1	ILMN_1367323	0001770253	S	3396	GTTCTTGGCACATGTTCTTATAGTCACAGCAGAGGATCGTTCTGGGCTGG				1q21	PREDICTED: Rattus norvegicus zinc finger protein 537 (predicted) (Zfp537_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662696-S	ILMN_264182	MTUS1	XM_001064538.1	XM_001064538.1		306487	109504230	XM_001064538.1	Mtus1	XP_001064538.1	ILMN_1370195	0002510168	S	3751	GGAGAATGAGGAGCTGCTGTGGAAACTGCACAACGGAGACCTCTGCAGCC				16q12.1	PREDICTED: Rattus norvegicus mitochondrial tumor suppressor 1 (Mtus1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62661416	ILMN_63673	LOC364366	XM_344389.2	XM_344389.2		364366	62661416	XM_344389.2	LOC364366	XP_344390.2	ILMN_1650301	0001940082	S	1	CTCATGCAGAAGGACAAGTGCCACATGCCTCCTCGGAGCCTGCTCTGTGT					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 6 (LOC364366), mRNA.					
Rattus norvegicus	RefSeq	GI_41054833	ILMN_267246	MAP1LC3A	NM_199500.1	NM_199500.1		362245	41054833	NM_199500.1	Map1lc3a	NP_955794.1	ILMN_1651045	0006550037	S	659	TGGGCCAGTCTTGTTAGGCTTGCTCTTTTGGGTGCTGGCTGGGTTGGGAG	3	+	145760288-145760337	3q42	Rattus norvegicus microtubule-associated protein 1 light chain 3 alpha (Map1lc3a), mRNA.	The lipid bilayer surrounding an autophagic vacuole, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered [goid 421] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A double-membrane-bounded vesicle in which endogenous cellular material is sequestered; known as autophagosome in yeast [goid 5776] [evidence ISS]; A double-membrane-bounded vesicle in which endogenous cellular material is sequestered; known as autophagosome in yeast [goid 5776] [evidence ISS]; A double-membrane-bounded vesicle in which endogenous cellular material is sequestered; known as autophagosome in yeast [goid 5776] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; The lipid bilayer surrounding an organelle [goid 31090] [evidence ISS]; The lipid bilayer surrounding an organelle [goid 31090] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IDA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine [goid 8429] [evidence ISS]	MGC105263	MGC105263
Rattus norvegicus	RefSeq	GI_62660382-S	ILMN_283671	CHIC2_PREDICTED	XM_001076614.1	XM_001076614.1		83835	109500545	XM_001076614.1	Chic2_predicted	XP_001076614.1	ILMN_1359723	0003190411	S	428	ACCACAAGCTGTGCTTGCACTGGAGACTGAGCAAAAGGAAATGTGAAACG				14p11	PREDICTED: Rattus norvegicus cysteine-rich hydrophobic domain 2 (predicted) (Chic2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27659722-S	ILMN_69718	CCNL1	NM_053662.3	NM_053662.3		114121	78126179	NM_053662.3	Ccnl1	NP_446114.1	ILMN_1363939	0003520082	S	1607	TGAGAGGTCCCATAAAGGCAAGCACCACGGTGGAAGTCGCTCAGGACATG	2	-	155757798-155757847	2q31	Rattus norvegicus cyclin L1 (Ccnl1), mRNA.	A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence NAS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		Ccnl; Ania-6a; MGC93069	Ccnl; Ania-6a; MGC93069
Rattus norvegicus	RefSeq	GI_62646411-S	ILMN_279909	DPM1_PREDICTED	XM_001072659.1	XM_001072659.1		296394	109471367	XM_001072659.1	Dpm1_predicted	XP_001072659.1	ILMN_1374692	0004590537	S	876	CCGTTGGTGAGGTTCCGATTTCATTTGTGGATCGAGTGTATGGTGAATCC				3q42	PREDICTED: Rattus norvegicus dolichol-phosphate (beta-D) mannosyltransferase 1 (predicted) (Dpm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717789-S	ILMN_48275	LOC501221	XM_576644.1	XM_576644.1		501221	62717789	XM_576644.1	LOC501221	XP_576644.1	ILMN_1350559	0003710369	S	1394	ACCACCAGTAACTGCTTTTCTACTATGTCTCCAAGGCAAGCCACAGGCTA					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC501221), mRNA.					
Rattus norvegicus	RefSeq	GI_62660243-S	ILMN_56050	LOC501899	XM_577323.1	XM_577323.1		501899	62660243	XM_577323.1	LOC501899	XP_577323.1	ILMN_1352573	0006200044	S	2530	AGAGATACATTTCACTGCAGCCCCAAAGGGAGGAACCGAGCCTCAGCAAT				14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (LOC501899), mRNA.					
Rattus norvegicus	RefSeq	GI_20270036-S	ILMN_275207	DAB2IP	NM_138710.1	NM_138710.1		192126	20270036	NM_138710.1	Dab2ip	NP_619724.1	ILMN_1373399	0004070100	S	5919	GTGAAAAGGAAAAAGGCAAACGTCGGAGTCAGCCGGAGCCCTTCCCTCCG	3	+	14840447-14840496	3p11	Rattus norvegicus disabled homolog 2 (Drosophila) interacting protein (Dab2ip), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]	DIP1/2	DIP1/2
Rattus norvegicus	RefSeq	GI_62666048-S	ILMN_55590	LOC294368	XM_228129.3	XM_228129.3		294368	62666048	XM_228129.3	LOC294368	XP_228129.3	ILMN_1350313	0006520113	S	1341	GGGCAGAGCTGCCTTGAGAGATCCCGGGGTGTTGGAGGAAGTTATTTGAC				20p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610012D17 (LOC294368), mRNA.					
Rattus norvegicus	RefSeq	GI_62644727-S	ILMN_283255	UAP1L1_PREDICTED	XM_001077578.1	XM_001077578.1		296560	109469548	XM_001077578.1	Uap1l1_predicted	XP_001077578.1	ILMN_1354198	0000730524	S	1497	GGAGAGGGGTTGGAAACGTACCTGCAAGGCCGAAAACTCCAGTCTCCATT				3p13	PREDICTED: Rattus norvegicus UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 (predicted) (Uap1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640694-S	ILMN_49909	LINS2_PREDICTED	XM_218748.3	XM_218748.3		308704	109458890	XM_218748.3	Lins2_predicted	XP_218748.3	ILMN_1349179	0002510215	S	1801	ACTCACCCAGTGCCAACTAATGGCCCACCTTCCCGGACACCACAGAGTCT	1	+	121168603-121168652	1q22	PREDICTED: Rattus norvegicus lines homolog 2 (Drosophila) (predicted) (Lins2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641065-S	ILMN_67920	RGD1562433_PREDICTED	XM_574515.2	XM_574515.2		499222	109459170	XM_574515.2	RGD1562433_predicted	XP_574515.1	ILMN_1350681	0000610086	S	1445	CGTGGGGCTAGAGGAGCCCAAGAAACTAGGGGTAGAAGACAAGCCCATAG	1	-	161962554-161962603	1q32	PREDICTED: Rattus norvegicus similar to ubiquilin 1 isoform 2 (predicted) (RGD1562433_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651398-S	ILMN_61796	LOC314521	XM_234747.2	XM_234747.2		314521	62651398	XM_234747.2	LOC314521	XP_234747.1	ILMN_1357033	0002630035	S	183	GCCTTCAGGGAAGGGTCTGGAGTGGCTGGCAAACATTTGGTGGGATGATG					PREDICTED: Rattus norvegicus similar to BWK3 (LOC314521), mRNA.					
Rattus norvegicus	RefSeq	GI_6978608-S	ILMN_299123	S100G	NM_012521.1	NM_012521.1		24249	6978608	NM_012521.1	S100g	NP_036653.1	ILMN_1355623	0000060193	S	113	TGCAGCCAAAGAAGGCGATCCAAACCAGCTGTCCAAGGAGGAGCTGAAGC	X	+	52447236-52447285	Xq21	Rattus norvegicus S100 calcium binding protein G (S100g), mRNA.	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]		Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Calb3; MGC72928; Cabp; Rncalbd9; Cbpi	Calb3; MGC72928; Cabp; Rncalbd9; Cbpi
Rattus norvegicus	RefSeq	GI_40254767-S	ILMN_269344	RHD	NM_022505.2	NM_022505.2		60414	40254767	NM_022505.2	Rhd	NP_071950.1	ILMN_1373400	0006860500	S	1298	ATTTTAAGCAAATCCATCTGAGAACGAGGCTGAGCACGGCGAGCCCTCCG	5	+	153672338-153672344:153672345-153672387	5q36	Rattus norvegicus Rh blood group, D antigen (Rhd), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Rh	Rh
Rattus norvegicus	RefSeq	GI_58866007-A	ILMN_296062	TMC5	NM_001012216.1	NM_001012216.1		365360	58866007	NM_001012216.1	Tmc5	NP_001012216.1	ILMN_1376817	0007050292	S	968	ATGGGTTTTACACCAACTCTACCATCCGGCATAGGATGGGCGGAGCGTCC	1	+	176865033-176865082	1q35	Rattus norvegicus transmembrane channel-like 5 (Tmc5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62661408-S	ILMN_63237	LOC364343	XM_344366.2	XM_344366.2		364343	62661408	XM_344366.2	LOC364343	XP_344367.2	ILMN_1357254	0003440270	S	619	AAGATTTAATGTGGCTCAGGTTCAGTCAACAGCAAGCATGCAGGAGGGGG				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC364343), mRNA.					
Rattus norvegicus	RefSeq	GI_27688924-S	ILMN_50289	EME1_PREDICTED	XM_220879.2	XM_220879.2		287634	109488818	XM_220879.2	Eme1_predicted	XP_220879.2	ILMN_1372905	0001850347	S	1567	CAGAATTTGCTGGCTAACATACAGGTGCGACGTGGGGAAGGTGTGACAGC	10	-	83279179-83279228	10q31	PREDICTED: Rattus norvegicus essential meiotic endonuclease 1 homolog 1 (S. pombe) (predicted) (Eme1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652798-I	ILMN_64457	RANGAP1_PREDICTED	XM_576313.1	XM_576313.1		362965	62652798	XM_576313.1	Rangap1_predicted	XP_576313.1	ILMN_1375936	0006660520	S	2619	GTCAGAGATGGGCTGCATTAGAAAGTGAAACTCTGGCCTTAACTGTGTGG				7q34	PREDICTED: Rattus norvegicus RAN GTPase activating protein 1 (predicted) (Rangap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647623-S	ILMN_52365	LOC497788	XM_579697.1	XM_579697.1		497788	62647623	XM_579697.1	LOC497788	XP_579697.1	ILMN_1354549	0004280180	S	1226	GAGCCAATGTAAGCATCAGAACTGTCAATCATGGTGTGCTGTCTATGTGT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_173113 (LOC497788), mRNA.					
Rattus norvegicus	RefSeq	GI_62658899-S	ILMN_54208	LOC288657	XM_213776.3	XM_213776.3		288657	62658899	XM_213776.3	LOC288657	XP_213776.3	ILMN_1363708	0000070128	S	750	ACAGGGGGTGCCCTATACTTTGGGGGCTTCTTCCAGGTGAGTGAGACCCA				12q15	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730405M13 (predicted) (LOC288657), mRNA.					
Rattus norvegicus	RefSeq	GI_9506570-S	ILMN_270347	EIF2S1	NM_019356.1	NM_019356.1		54318	9506570	NM_019356.1	Eif2s1	NP_062229.1	ILMN_1358514	0001780037	S	886	GCAAGGCAGCTGGAACGGCTTGAGAGAGAAAATGCAGAAGTGGATGGAGA	6	+	101519622-101519671	6q24	Rattus norvegicus eukaryotic translation initiation factor 2, subunit 1 alpha (Eif2s1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA [goid 5850] [evidence IEA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of a stimulus indicating the organism is under stress [goid 43558] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of a stimulus indicating the organism is under stress [goid 43558] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93488	MGC93488
Rattus norvegicus	RefSeq	GI_62658475-S	ILMN_269598	ZFP316_PREDICTED	XM_001072439.1	XM_001072439.1		304293	109496616	XM_001072439.1	Zfp316_predicted	XP_001072439.1	ILMN_1356898	0000110047	S	2665	TTCTCGCAGAGCTCGCACCTCCTCACGCACATGAAGACGCATCGCGGGCA				12p11	PREDICTED: Rattus norvegicus zinc finger protein 316 (predicted) (Zfp316_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777717-S	ILMN_293602	OLR530	NM_001001376.1	NM_001001376.1		295786	47777717	NM_001001376.1	Olr530	NP_001001376.1	ILMN_1370781	0006040494	S	687	TTCCACTTCAGGAAAGCACAAAGCCTTCTCCACTTGTGCCTCTCATCTCC	3	+	70329514-70329563	3q24	Rattus norvegicus olfactory receptor 530 (Olr530), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr530	Olr530
Rattus norvegicus	RefSeq	GI_62649802-S	ILMN_48379	LOC502987	XM_578495.1	XM_578495.1		502987	62649802	XM_578495.1	LOC502987	XP_578495.1	ILMN_1360739	0002470692	S	40	GCAGTGAACTGAAAGACAGGGTGTGCTCTGTGGACAGTCAGAGGGTGAAG				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900010J23 (LOC502987), mRNA.					
Rattus norvegicus	RefSeq	GI_62658802-S	ILMN_48128	ZFP11_PREDICTED	XM_222110.3	XM_222110.3		288625	62658802	XM_222110.3	Zfp11_predicted	XP_222110.3	ILMN_1370162	0002030519	S	2511	ACTTCCTCCAGCCTTAAGCGACACCAGGAGACTCACACGCTCCTGAAACC					PREDICTED: Rattus norvegicus zinc finger protein 11 (predicted) (Zfp11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40786452-S	ILMN_296548	ABCC12	NM_199377.1	NM_199377.1		291923	40786452	NM_199377.1	Abcc12	NP_955409.1	ILMN_1352372	0003190309	S	4202	ATGGATGTGTGAGAGGAGAAGCCTGAAGGTAGAGTCAAGCAGCCCTGGCC	19	+	21962427-21962476	19p11	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 12 (Abcc12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865541-A	ILMN_285368	GLIPR1	NM_001011987.1	NM_001011987.1		299783	58865541	NM_001011987.1	Glipr1	NP_001011987.1	ILMN_1376740	0004070047	S	673	CGTGGCCATATAAGCAGGGAGCCACTTGCAGTGCTTGCCCAAAGGATGAC	7	-	51082958-51083007	7q21	Rattus norvegicus GLI pathogenesis-related 1 (Glipr1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			MGC108941	MGC108941
Rattus norvegicus	RefSeq	GI_62664790-S	ILMN_61913	LOC498907	XM_574196.1	XM_574196.1		498907	62664790	XM_574196.1	LOC498907	XP_574196.1	ILMN_1353477	0003060707	S	346	TGCCGGGTCCTCCCGACAAAATTGGGCTCGTGGAACGTCTCTCATGCGTC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498907), mRNA.					
Rattus norvegicus	RefSeq	GI_62641213-S	ILMN_52178	LOC309035	XM_219389.2	XM_219389.2		309035	62641213	XM_219389.2	LOC309035	XP_219389.1	ILMN_1363281	0001690132	S	2609	CCCTGGGGCCTGAAGAGCTGACTATCTCCTGCCTGTTCCATTAGAGGACC				1q35	PREDICTED: Rattus norvegicus hypothetical LOC309035 (predicted) (LOC309035), mRNA.					
Rattus norvegicus	RefSeq	GI_62663436-S	ILMN_54573	RGD1563601_PREDICTED	XM_574007.2	XM_574007.2		498731	109504838	XM_574007.2	RGD1563601_predicted	XP_574007.1	ILMN_1370343	0006370242	S	1279	CTCCCCCGCAGTGCCGAAGCCCTTGTATTGTGTTTGTGAACCATCCTACG	17	-	33351602-33351651	17p12	PREDICTED: Rattus norvegicus similar to Tpi1 protein (predicted) (RGD1563601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758775-S	ILMN_295102	KYNU	NM_053902.1	NM_053902.1		116682	16758775	NM_053902.1	Kynu	NP_446354.1	ILMN_1373409	0003440711	S	1310	AAAGAGGAGTCGTCTGTGACAAGCGAGAACCAGAAGGCATCCGGGTGGCC	3	+	24195475-24195524	3q12	Rattus norvegicus kynureninase (L-kynurenine hydrolase) (Kynu), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid [goid 6569] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid [goid 6569] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IDA]; The chemical reactions and pathways resulting in the formation of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 19805] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon-gamma is also known as type II interferon [goid 34341] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B6 stimulus. Vitamin B6 encompasses pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate [goid 34516] [evidence ISS]; The chemical reactions and pathways involving anthranilate (2-aminobenzoate) [goid 43420] [evidence ISS]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IMP]; Catalysis of the reaction: L-kynurenine + H2O = anthranilate + L-alanine [goid 30429] [evidence ISS]; Catalysis of the reaction: L-kynurenine + H2O = anthranilate + L-alanine [goid 30429] [evidence IDA]; Catalysis of the reaction: L-kynurenine + H2O = anthranilate + L-alanine [goid 30429] [evidence IEA]; Catalysis of the reaction: L-kynurenine + H2O = anthranilate + L-alanine [goid 30429] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644042-S	ILMN_56386	LOC497760	XM_579456.1	XM_579456.1		497760	62644042	XM_579456.1	LOC497760	XP_579456.1	ILMN_1370588	0004920039	S	4555	GCAACGACATTGACTACTACCTGGGCCAGAGCTTCCGGGAGCAACTAGCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022382 (LOC497760), mRNA.					
Rattus norvegicus	RefSeq	GI_62652114-S	ILMN_52717	PSRC2	XM_235146.4	XM_235146.4		314836	109480569	XM_235146.4	Psrc2	XP_235146.4	ILMN_1368627	0001170148	S	5624	CCCTGGAACGGTTCTGCTCTGTTATGCCAGCAAACTCTCGACTTGCACTG	7	+	54710213-54710262	7q22	PREDICTED: Rattus norvegicus proline/serine-rich coiled-coil 2 (Psrc2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664758-S	ILMN_263377	LOC682174	XM_001060250.1	XM_001060250.1		682174	109508392	XM_001060250.1	LOC682174	XP_001060250.1	ILMN_1376907	0007610437	S	748	ACCGCCGGGGATGGCCTGATCGAGCTGCGAAAGCTGGAAGCTGCTGAGGA					PREDICTED: Rattus norvegicus similar to prohibitin (LOC682174), mRNA.					
Rattus norvegicus	RefSeq	GI_62667375-S	ILMN_274194	COVA1_PREDICTED	XM_001060535.1	XM_001060535.1		302817	109512567	XM_001060535.1	Cova1_predicted	XP_001060535.1	ILMN_1362847	0004280433	S	2919	TTAAAATGCAGTCAGGCGTGGGCACATGTGTGCTCACATTGGCAGAAGGG				Xq36	PREDICTED: Rattus norvegicus cytosolic ovarian carcinoma antigen 1 (predicted) (Cova1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665266-S	ILMN_269781	RGD1562857_PREDICTED	XM_001077164.1	XM_001077164.1		498949	109508871	XM_001077164.1	RGD1562857_predicted	XP_001077164.1	ILMN_1364528	0006860278	S	3970	CCCCCGTGACCTGGAAGACGAAGTGAAGGAGCAAATGAAGCAGCACCAGG				19q12	PREDICTED: Rattus norvegicus similar to KIAA0931 protein (predicted) (RGD1562857_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664766-S	ILMN_60748	LOC291815	XM_226249.3	XM_226249.3		291815	62664766	XM_226249.3	LOC291815	XP_226249.3	ILMN_1352914	0001450397	S	1300	TGGGATGGTGAGGAGAAAGCATCACTTTGCTGAAGAATCAAAGCTAGCTC				19p14	PREDICTED: Rattus norvegicus similar to amyloid beta precursor protein binding protein 1 (LOC291815), mRNA.					
Rattus norvegicus	RefSeq	GI_62661583-S	ILMN_276084	RGD1561256_PREDICTED	XM_001062885.1	XM_001062885.1		498528	109502531	XM_001062885.1	RGD1561256_predicted	XP_001062885.1	ILMN_1372970	0005080020	S	1027	CTCTGTACTCAACTGTCAGCAGGCCACCCAGATCGTACCCCATCAAGGGC				15p12	PREDICTED: Rattus norvegicus similar to Hypothetical protein BC024118 (predicted) (RGD1561256_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649332	ILMN_69254	TTC4_PREDICTED	XM_342876.2	XM_342876.2		362556	62649332	XM_342876.2	Ttc4_predicted	XP_342877.2	ILMN_1650721	0000070338	S	2798	CTGCGCCTTCCTACCGTCTAATTGGAGATCTAACCCAGCCTCTCACTTGG				5q34	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 4 (predicted) (Ttc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16258826-S	ILMN_285316	CDO1	NM_052809.1	NM_052809.1		81718	16258826	NM_052809.1	Cdo1	NP_434696.1	ILMN_1364108	0004050563	S	1291	GGGATGCAGATAGCAGTTTGGTGTTTGGTAGTGAACAGCAGTGGGGCCAG	18	-	40914144-40914193	18q11	Rattus norvegicus cysteine dioxygenase, type I (Cdo1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid [goid 6534] [evidence TAS]; The secretion of milk by the mammary gland [goid 7595] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of L-cysteine, the levorotatory isomer of 2-amino-3-mercaptopropanoic acid [goid 19448] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus [goid 33762] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The chemical reactions and pathways involving L-cysteine, the levorotatory isomer of 2-amino-3-mercaptopropanoic acid [goid 46439] [evidence NAS]; The chemical reactions and pathways involving L-cysteine, the levorotatory isomer of 2-amino-3-mercaptopropanoic acid [goid 46439] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with ferrous iron, Fe(II) [goid 8198] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: L-cysteine + O2 = 3-sulfinoalanine [goid 17172] [evidence TAS]; Catalysis of the reaction: L-cysteine + O2 = 3-sulfinoalanine [goid 17172] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639240-S	ILMN_284217	PLEKHG2_PREDICTED	XM_001073374.1	XM_001073374.1		292750	109461533	XM_001073374.1	Plekhg2_predicted	XP_001073374.1	ILMN_1353767	0000670369	S	4395	CTCAGCTATGCCACCACAGTGAGCATTCAGGTAGGAGGTGGTGGGAGGCT				1q21	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family G (with RhoGef domain) member 2 (predicted) (Plekhg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27671194-S	ILMN_161738	LOC304125	XM_221711.1	XM_221711.1			27671194	XM_221711.1	LOC304125		ILMN_2040087	0004220450	S	683	GAAGGAAAGGGTGGGCAGCAAGTAGACAGCGAGAAGGGAAAAGGGGGAAG										
Rattus norvegicus	RefSeq	GI_34869028	ILMN_297332	RGD1561195_PREDICTED	XM_001065499.1	XM_001065499.1		298126	109476635	XM_001065499.1	RGD1561195_predicted	XP_001065499.1	ILMN_1650084	0000060082	S	43	AGGGTGGCAAGAAGAAGGGCCGTTCTGCCATCAACAAGGTGGTGACCCAA				5q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1561195_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871190-S	ILMN_266302	LOC366468	XM_001056695.1	XM_001056695.1		366468	109477216	XM_001056695.1	LOC366468	XP_001056695.1	ILMN_2039871	0007210386	S	317	TGTCCATATCCCAGACGGTGTGAACATCACTGCCACAATCGAGCAGCAGC				5q36	PREDICTED: Rattus norvegicus similar to U7 snRNP-specific Sm-like protein LSM10 (LOC366468), mRNA.					
Rattus norvegicus	RefSeq	GI_62649633	ILMN_266302	LOC366468	XM_001056695.1	XM_001056695.1		366468	109477216	XM_001056695.1	LOC366468	XP_001056695.1	ILMN_1650456	0002630427	S	593	GGGACCCAGAATTCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCT				5q36	PREDICTED: Rattus norvegicus similar to U7 snRNP-specific Sm-like protein LSM10 (LOC366468), mRNA.					
Rattus norvegicus	RefSeq	GI_31543578-S	ILMN_280192	RELN	NM_080394.2	NM_080394.2		24718	31543578	NM_080394.2	Reln	NP_536319.2	ILMN_1352957	0000460152	S	11331	AGTGTTCCGTGGCTGGTTTACTAACAGTAACTGCCATTTCGTGTCCGTGG	4	+	8609013-8609062	4q11	Rattus norvegicus reelin (Reln), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence IEA]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord [goid 21511] [evidence IEA]; The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord [goid 21511] [evidence ISS]; The migration of cells in the cerebral cortex in which cells move orthogonally to the direction of radial migration and do not use radial glial cell processes as substrates for migration [goid 21800] [evidence ISS]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction [goid 51057] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction [goid 51057] [evidence ISS]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord [goid 21511] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction [goid 51057] [evidence IEA]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [pmid 12670697] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord [goid 21511] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction [goid 51057] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine/tyrosine = ADP + protein serine/threonine/tyrosine phosphate [goid 4712] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	reeler; Reelen; Rl	reeler; Reelen; Rl
Rattus norvegicus	RefSeq	GI_31343478-S	ILMN_270092	CYP4A3	NM_175760.2	NM_175760.2		298423	31343478	NM_175760.2	Cyp4a3	NP_786936.1	ILMN_1364951	0000670167	S	1675	CATTTCTGTAGCTTTTCCTCCAGACTCCATCCCAGTTTGTGCGTGGACCC	5	-	135876525-135876574	5q36	Rattus norvegicus cytochrome P450, family 4, subfamily a, polypeptide 3 (Cyp4a3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence IMP]; The chemical reactions and pathways resulting in the formation of icosanoids, any of a group of C20 polyunsaturated fatty acids [goid 46456] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA];  [goid 8391] [evidence IMP];  [goid 8393] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: octane + reduced rubredoxin + O2 = 1-octanol + oxidized rubredoxin + H2O [goid 18685] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp4a3; CYPIVA3	Cyp4a3; CYPIVA3
Rattus norvegicus	RefSeq	GI_62651653-S	ILMN_52538	RAB5B_PREDICTED	XM_213824.4	XM_213824.4		288779	109480136	XM_213824.4	Rab5b_predicted	XP_213824.3	ILMN_1364389	0004850451	S	2272	CCATGTACCACTAGAGGCTCCTCCCACAGAGGCCGTTTGTCCAGTGACAG	7	-	1980631-1980680	7q11	PREDICTED: Rattus norvegicus RAB5B, member RAS oncogene family (predicted) (Rab5b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57977296-I	ILMN_271505	RTN3	NM_080909.2	NM_080909.2		140945	57977296	NM_080909.2	Rtn3	NP_543185.2	ILMN_1375759	0003290731	I	1929	GGCTGCCCTCACAGGAACTGAGGAGAAGGGGACAGTGGATAAAGAGAAAG	1	-	210139639-210139688	1q43	Rattus norvegicus reticulon 3 (Rtn3), transcript variant 1, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62659105-S	ILMN_274676	LOC288574	XR_007334.1	XR_007334.1		288574	109514624	XR_007334.1	LOC288574		ILMN_1349353	0006040338	S	1611	GTCCTATGTCCAGAAAATGAAATTTCCAATGGAACAGGCAAGTGCGTGCA					PREDICTED: Rattus norvegicus similar to EC1-V2R pheromone receptor (LOC288574), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658336-S	ILMN_65789	RGD1566141_PREDICTED	XM_213690.4	XM_213690.4		288417	109495024	XM_213690.4	RGD1566141_predicted	XP_213690.4	ILMN_1349580	0002900204	S	1768	GATGAAAATCCGAAGACGTGGGAAGCCTGTGAGCCGGTGCAGTGTGGACC	12	+	4244269-4244318	12p12	PREDICTED: Rattus norvegicus similar to CG016 (predicted) (RGD1566141_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653798	ILMN_271892	LBXCOR1_PREDICTED	XM_001075793.1	XM_001075793.1		315748	109484850	XM_001075793.1	Lbxcor1_predicted	XP_001075793.1	ILMN_1650679	0002120131	S	3165	CACTCCACCCTGAGTAGGGCCTGGGACCCGGAATGTGAATATAATGTAGC				8q24	PREDICTED: Rattus norvegicus ladybird homeobox 1 homolog (Drosophila) corepressor 1 (predicted) (Lbxcor1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648954	ILMN_287191	ABCA1	NM_178095.2	NM_178095.2		313210	31342527	NM_178095.2	Abca1	NP_835196.1	ILMN_1650701	0005690520	S	6644	GAGCTAGGTCTCCCTTTGCACCGGGTCAAGTGTTCCAGAAGAAAGCGTCC	5	-	70493423-70493472	5q24	Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 1 (Abca1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence IEA]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence ISS]	The regulated release of a peptide from a cell or group of cells [goid 2790] [evidence IEA]; The regulated release of a peptide from a cell or group of cells [goid 2790] [evidence ISS]; The covalent or non-covalent attachment of lipid moieties to an amino acid in a protein [goid 6497] [evidence IEA]; The covalent or non-covalent attachment of lipid moieties to an amino acid in a protein [goid 6497] [evidence ISS]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence IEA]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence IDA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence TAS]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence IEA]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence IDA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence IMP]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence ISS]; A series of molecular signals within the cell that are mediated by the Cdc42 protein switching to a GTP-bound active state [goid 32488] [evidence IEA]; A series of molecular signals within the cell that are mediated by the Cdc42 protein switching to a GTP-bound active state [goid 32488] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence ISS]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence IEA]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence IMP]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; The translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer [goid 45332] [evidence IEA]; The translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer [goid 45332] [evidence ISS]; The regulated release of interleukin 1 beta from a cell or group of cells [goid 50702] [evidence IEA]; The regulated release of interleukin 1 beta from a cell or group of cells [goid 50702] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of phospholipid within an organism or cell [goid 55091] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of phospholipid within an organism or cell [goid 55091] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a platelet dense granule. A platelet dense granule is an electron-dense granule occurring in blood platelets that stores and secretes adenosine nucleotides and serotonin. They contain a highly condensed core consisting of serotonin, histamine, calcium, magnesium, ATP, ADP, pyrophosphate and membrane lysosomal proteins [goid 60155] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a platelet dense granule. A platelet dense granule is an electron-dense granule occurring in blood platelets that stores and secretes adenosine nucleotides and serotonin. They contain a highly condensed core consisting of serotonin, histamine, calcium, magnesium, ATP, ADP, pyrophosphate and membrane lysosomal proteins [goid 60155] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of phospholipids into, out of, within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester [goid 5548] [evidence IEA]; Enables the directed movement of phospholipids into, out of, within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester [goid 5548] [evidence ISS]; Enables the directed movement of phospholipids into, out of, within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester [goid 5548] [evidence ISS]; Interacting selectively with high-density lipoprotein: one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 8035] [evidence IPI]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence IEA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence ISS]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence ISS]; Combining with an apolipoprotein, the protein component of a lipoprotein, to initiate a change in cell activity [goid 30226] [evidence IEA]; Interacting selectively with the SNAP receptor syntaxin-13 [goid 30349] [evidence IEA]; Interacting selectively with the SNAP receptor syntaxin-13 [goid 30349] [evidence ISS]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence IEA]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence ISS]; Combining with apolipoprotein A-I to initiate a change in cell activity [goid 34188] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_31795572-S	ILMN_269871	FBXO11	NM_181631.2	NM_181631.2		301674	31795572	NM_181631.2	Fbxo11	NP_853662.1	ILMN_1349345	0004610593	S	3528	CCCCCCATTTATGTGTATTGGTGACAGTGGGTATAAACAGCCTGAAAGTG	6	-	11542709-11542758	6q12	Rattus norvegicus F-box protein 11 (Fbxo11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + histone-arginine = S-adenosyl-L-homocysteine + histone-N-methyl-arginine [goid 8469] [evidence ISS]; Catalysis of the transfer of a methyl group to the carbon atom of an arginine residue in a protein [goid 35244] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Vit1	Vit1
Rattus norvegicus	RefSeq	GI_62645954-S	ILMN_61158	SNX5_PREDICTED	XM_215872.3	XM_215872.3		296199	62645954	XM_215872.3	Snx5_predicted	XP_215872.3	ILMN_1362745	0001990072	S	1217	GAACTGGAAATAAAGCATGCCAGAACAATGTCTCCCTGTTGCAGAGCTGC				3q41	PREDICTED: Rattus norvegicus sorting nexin 5 (predicted) (Snx5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665081-S	ILMN_288334	RGD1311867_PREDICTED	XM_001071232.1	XM_001071232.1		364976	109508611	XM_001071232.1	RGD1311867_predicted	XP_001071232.1	ILMN_1370697	0002640438	S	93	GAGCGGAGAGCATCAGCAGAATGAGAACCACGAGGAGACACCTAGCTCAG				19q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700013H19 (predicted) (RGD1311867_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661093-A	ILMN_278576	SPETEX-2E	NM_001011702.1	NM_001011702.1		361012	58743346	NM_001011702.1	Spetex-2E	NP_001011702.1	ILMN_1376932	0002760026	S	7	CACCAGCTGCTCAAGCTCATTCAGAAGGAGAGGGGAGACCAAGGAGAGAC	15	+	6289498-6289547	15p16	Rattus norvegicus Spetex-2E protein (Spetex-2E), mRNA.					
Rattus norvegicus	RefSeq	GI_62645380-S	ILMN_267058	NDUFS3_PREDICTED	XM_001077876.1	XM_001077876.1		295923	109470302	XM_001077876.1	Ndufs3_predicted	XP_001077876.1	ILMN_1361813	0003450673	S	746	GGAGTTGGCACAAGAGTTCCGCAAGTTTGACCTGAACAGCCCCTGGGAGG				3q24	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 3 (predicted) (Ndufs3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645080-S	ILMN_63533	LOC502625	XM_578118.1	XM_578118.1		502625	62645080	XM_578118.1	LOC502625	XP_578118.1	ILMN_1350780	0001940113	S	1958	GTTGTTGCGCTCATGGGAAGGCAACGGAGTAACCTGTTTGGACGCAGCTG					PREDICTED: Rattus norvegicus similar to Rho GTPase activating protein 15 (LOC502625), mRNA.					
Rattus norvegicus	RefSeq	GI_62666410-S	ILMN_272733	RGD1560720_PREDICTED	XM_001065281.1	XM_001065281.1		313311	109512553	XM_001065281.1	RGD1560720_predicted	XP_001065281.1	ILMN_1374463	0003290446	S	313	CCAGCCGAAGTTCCACCGGTCCCTGAAAGCGTGCCGGTTCCTAATGAAGA				Xq11	PREDICTED: Rattus norvegicus RGD1560720 (predicted) (RGD1560720_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656831-S	ILMN_48030	LOC501713	XM_577118.1	XM_577118.1		501713	62656831	XM_577118.1	LOC501713	XP_577118.1	ILMN_1362621	0004780735	S	607	TGCAGTACGATCCCTGGCGTCTGTTGGGCCGGTCTACTGTGAAGGGTGTT					PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (LOC501713), mRNA.					
Rattus norvegicus	RefSeq	GI_62658150-S	ILMN_289616	RGD1561203_PREDICTED	XM_001059014.1	XM_001059014.1		498109	109494667	XM_001059014.1	RGD1561203_predicted	XP_001059014.1	ILMN_1358342	0006200148	S	610	GAAGTGAAGAAGCCCGAGACGGAGGCAGCGGAAGTGGCTGCGTTACGGCA				11q23	PREDICTED: Rattus norvegicus similar to polymerase (RNA) II (DNA directed) polypeptide H (predicted) (RGD1561203_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865579-A	ILMN_301903	ZAP70	NM_001012002.1	NM_001012002.1		301348	58865579	NM_001012002.1	Zap70	NP_001012002.1	ILMN_1376461	0007040025	S	1880	ATTACTACAGCATGGCTAGCCGGGCAGAGGGACCCCCACAGTGTGAACAG	9	+	35714742-35714791	9q21	Rattus norvegicus zeta-chain (TCR) associated protein kinase (Zap70), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The process by which successful recombination of a T cell receptor beta chain into a translatable protein coding sequence leads to rescue from apoptosis and subsequent proliferation of an immature T cell [goid 43366] [evidence ISS]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; The process of T cell selection that occurs in the thymus [goid 45061] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell differentiation [goid 46638] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC108902; Srk; Zap70	MGC108902; Srk; Zap70
Rattus norvegicus	RefSeq	GI_62718346-S	ILMN_263721	LOC685331	XM_001057424.1	XM_001057424.1		685331	109513211	XM_001057424.1	LOC685331	XP_001057424.1	ILMN_1364941	0006400685	S	1668	CACTTGGAAGAAGTGCTAGGTGGGGAGGGTCTTCTGAGCTGGTGTGGGGA	Un|NW_047874.1	+	706048-706097		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC685331), mRNA.					
Rattus norvegicus	RefSeq	GI_62718784-S	ILMN_263721	LOC685331	XM_001057424.1	XM_001057424.1		685331	109513211	XM_001057424.1	LOC685331	XP_001057424.1	ILMN_1369284	0001850040	S	919	CTGCAGAAAGAGCAGAAGCAGAATTATGAGAAGATGCGGGCAAAGCTCGC	Un|NW_047874.1	+	705299-705348		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC685331), mRNA.					
Rattus norvegicus	RefSeq	GI_62663046-S	ILMN_69625	LOC361187	XM_341469.3	XM_341469.3		361187	109503648	XM_341469.3	LOC361187	XP_341470.3	ILMN_1360254	0003440278	S	651	TGGAGCGGACATCAATGCCAAGAACACAGAACTTTTGCGGCCTGTCGACC	16|NW_047481.1	+	83448-83497		PREDICTED: Rattus norvegicus similar to ankyrin repeat and SOCs box-containing protein 5 (LOC361187), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62654389-S	ILMN_54547	EPM2AIP1_PREDICTED	XM_236659.3	XM_236659.3		316021	62654389	XM_236659.3	Epm2aip1_predicted	XP_236659.3	ILMN_1365386	0002630471	S	3050	ACTCTGCTCCCTGCGGGGGGCGCTTCTCAGAGGGGGGAAGAGAGATGTCT				8q32	PREDICTED: Rattus norvegicus EPM2A (laforin) interacting protein 1 (predicted) (Epm2aip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.18247	ILMN_272843	TOB2	NM_001007146.1	NM_001007146.1		315159	55741834	NM_001007146.1	Tob2	NP_001007147.1	ILMN_1530366	0004070619	S	1539	ACATGTAGTTTTCTATATGACATCTTTAATGAGTGGTTTCCTGTGCTAAG	7	-	120201512-120201561	7q34	Rattus norvegicus transducer of ERBB2, 2 (Tob2), mRNA.		Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence ISS]	Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence ISS]	MGC105824	MGC105824
Rattus norvegicus	RefSeq	GI_55741834-S	ILMN_272843	TOB2	NM_001007146.1	NM_001007146.1		315159	55741834	NM_001007146.1	Tob2	NP_001007147.1	ILMN_1366386	0001770458	S	1997	CATGCCTGTGCGTGTGTGGCTTGCTGTCATGGTCTCAAGGATTCCGAGCC	7	-	120201054-120201103	7q34	Rattus norvegicus transducer of ERBB2, 2 (Tob2), mRNA.		Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence ISS]	Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence ISS]	MGC105824	MGC105824
Rattus norvegicus	RefSeq	GI_62662515	ILMN_291431	CPE	XM_001074218.1	XM_001074218.1		25669	109503275	XM_001074218.1	Cpe	XP_001074218.1	ILMN_1650689	0006350075	S	188	TGGTGTCGGTATGGCTGCAGTGCACCGCCATCAGCAGGATCTACACGGTG	16	+	26748867-26748916	16p13	PREDICTED: Rattus norvegicus carboxypeptidase E (Cpe), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 6518] [evidence IDA]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence TAS]; The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges [goid 30070] [evidence ISS]; The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges [goid 30070] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence IDA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence ISS]; Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IMP]; Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_46485439-S	ILMN_291461	GPI	NM_207592.1	NM_207592.1		292804	46485439	NM_207592.1	Gpi	NP_997475.1	ILMN_1365670	0000940167	S	1903	CTGTTGAAGCAGGCGGAAGGGCTCTGATGCTGACGCCATGTTGTTCTGAC	1	-	86658897-86658946	1q21	Rattus norvegicus glucose phosphate isomerase (Gpi), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEP]; The chemical reactions and pathways resulting in the formation of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid [goid 19242] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O [goid 46185] [evidence IMP]; The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 51156] [evidence IDA]	Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate [goid 4347] [evidence ISS]; Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate [goid 4347] [evidence IDA]; Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate [goid 4347] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the transfer of a functional group from one position to another within a single molecule [goid 16866] [evidence IMP]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IPI]	Amf; Gpi1	Amf; Gpi1
Rattus norvegicus	RefSeq	GI_62654894	ILMN_57684	LOC367239	XM_578783.1	XM_578783.1		367239	62654894	XM_578783.1	LOC367239	XP_578783.1	ILMN_1650914	0007050369	S	193	CACAGCCTTTAGATAGAGTGTGGGCCTTAGTAGCCAGAAGCACCCCTGTC					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 variant 1 (LOC367239), mRNA.					
Rattus norvegicus	RefSeq	GI_47576086-S	ILMN_278823	OLR1409	NM_001000004.1	NM_001000004.1		287259	47576086	NM_001000004.1	Olr1409	NP_001000004.1	ILMN_1365416	0007100672	S	327	TGCCAATGTGGACACCTTTCTCCTCGCTGCCATGGCACTGGACAGATTCG	10	+	36609073-36609122	10q22	Rattus norvegicus olfactory receptor 1409 (Olr1409), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1409	Olr1409
Rattus norvegicus	RefSeq	GI_62717780-S	ILMN_70197	LOC367375	XM_346113.2	XM_346113.2		367375	62717780	XM_346113.2	LOC367375	XP_346114.2	ILMN_1352920	0003450270	S	937	GGTTTGAGTGGGGCACAGTGTATGTGGCATCCTACTCCCTGAGAACGCTC					PREDICTED: Rattus norvegicus similar to Down syndrome cell adhesion molecule (LOC367375), mRNA.					
Rattus norvegicus	RefSeq	GI_62651401-S	ILMN_62147	LOC500747	XM_576126.1	XM_576126.1		500747	62651401	XM_576126.1	LOC500747	XP_576126.1	ILMN_1361893	0006100519	S	849	CCTCATCAGGCAGGAGAGGGGTCTACAAGAAGGCAAAGACCCTGGAATAG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC500747), mRNA.					
Rattus norvegicus	RefSeq	GI_34859345-S	ILMN_48624	LOC312688	XM_232259.3	XM_232259.3		312688	62648480	XM_232259.3	LOC312688	XP_232259.3	ILMN_1349649	0006130279	S	26	CGCGGTGCCACGTTCTCCTCTGGAGCCCTTTGCAGATACCGCTCGGTCTT					PREDICTED: Rattus norvegicus similar to ubiquitin specific protease UBP43 (LOC312688), mRNA.					
Rattus norvegicus	RefSeq	GI_19924050-S	ILMN_281142	CXCL3	NM_138522.1	NM_138522.1		171551	19924050	NM_138522.1	Cxcl3	NP_612531.1	ILMN_1368177	0000520142	S	278	GAAGTTACTGAAGAGCCCCTCCCTGTGACACTGAAGAGTTACGATGTCAG	14	-	18778295-18778317:18778318-18778330:18786846-18786859	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 3 (Cxcl3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence NAS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Cinc-2; Cinc2	Cinc-2; Cinc2
Rattus norvegicus	RefSeq	GI_62638662-S	ILMN_60684	LOC499054	XM_579916.1	XM_579916.1		499054	62638662	XM_579916.1	LOC499054	XP_579916.1	ILMN_1350955	0003190193	S	506	AGCCTCCACATTGCAGTGATGTGCAAACTTCTGCCTTTCAGCCATGATGG					PREDICTED: Rattus norvegicus LOC499054 (LOC499054), mRNA.					
Rattus norvegicus	RefSeq	GI_19705444-S	ILMN_298457	NLGN3	NM_134336.1	NM_134336.1		171297	19705444	NM_134336.1	Nlgn3	NP_599163.1	ILMN_1359670	0002350673	S	2764	GCAGACCTTGCACCCCTATAACACCTTTGCCGCCGGATTCAACAGCACCG	X	+	89398263-89398312	Xq31	Rattus norvegicus neuroligin 3 (Nlgn3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 15681343] [evidence IDA]	A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence ISS]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [pmid 15681343] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664532-S	ILMN_62979	NEDD4L	XM_574161.2	XM_574161.2		291553	109506711	XM_574161.2	Nedd4l	XP_574161.2	ILMN_1363579	0006370463	S	2885	GGTCCGCGTGCACTTTTGCATTTGCCTAGCAGACTTTTGCAGAGCCCGTG	18	+	61475832-61475881	18q12.1	PREDICTED: Rattus norvegicus neural precursor cell expressed, developmentally down-regulated 4-like (Nedd4l), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence ISS]; Any process that decreases the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 10766] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA];  [goid 17080] [evidence ISS];  [goid 19871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652089-S	ILMN_300540	SYT1	NM_001033680.1	NM_001033680.1		25716	76253865	NM_001033680.1	Syt1	NP_001028852.1	ILMN_1357193	0003290021	S	4263	CTTGTGAGCCGGTGACTGGACCTGCTTTCTGACCAAGATCCATCCTCTGA	7	-	47241141-47241190	7q21	Rattus norvegicus synaptotagmin I (Syt1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; The lipid bilayer surrounding an endocytic vesicle [goid 30666] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence TAS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]	P65	P65
Rattus norvegicus	RefSeq	GI_62647442-S	ILMN_67058	LOC500190	XM_575542.1	XM_575542.1		500190	62647442	XM_575542.1	LOC500190	XP_575542.1	ILMN_1367188	0004540563	S	409	GCTGTATAGACCATACACAGCTGTGGGCATGCACAGTTCCCCCTTCTTCC				4q32	PREDICTED: Rattus norvegicus similar to IgM kappa chain variable region (LOC500190), mRNA.					
Rattus norvegicus	RefSeq	GI_62658495-S	ILMN_270845	LOC686219	XM_001072941.1	XM_001072941.1		686219	109496633	XM_001072941.1	LOC686219	XP_001072941.1	ILMN_1350330	0000430538	S	2434	AGACCAAGAAATACCAGGACAGCGAGGGTCTCTACTACCTCGCGGGCACC					PREDICTED: Rattus norvegicus similar to CG31151-PB, isoform B (LOC686219), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718804-S	ILMN_63821	LOC367484	XM_346160.2	XM_346160.2		367484	62718804	XM_346160.2	LOC367484	XP_346161.2	ILMN_1367701	0001570017	S	6	TCCTAGAAGCCAGGGAGGCTGAGCATGAGGAAGACAGGTCTCTGGGAGAG					PREDICTED: Rattus norvegicus hypothetical LOC367484 (LOC367484), mRNA.					
Rattus norvegicus	RefSeq	GI_47576350-S	ILMN_292339	OLR1539	NM_001000729.1	NM_001000729.1		404984	47576350	NM_001000729.1	Olr1539	NP_001000729.1	ILMN_1359208	0004850576	S	36	TGTTCTCATGGGACTCACTGAGAGTCCCGAGCTACAGATTCCACTCTTCC	11	+	42010700-42010749	11q12	Rattus norvegicus olfactory receptor 1539 (Olr1539), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1539	Olr1539
Rattus norvegicus	RefSeq	GI_62642698-S	ILMN_267496	RGD1563119_PREDICTED	XM_001056692.1	XM_001056692.1		499497	109465771	XM_001056692.1	RGD1563119_predicted	XP_001056692.1	ILMN_1364123	0002360487	S	3781	TTGCTACATGTTTCTCACTGTAAAAGGCTGCCGCTGGGTGGCAGAAGCTG				2q11	PREDICTED: Rattus norvegicus similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) (predicted) (RGD1563119_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642595-S	ILMN_50256	LOC365507	XM_345062.3	XM_345062.3		365507	109460330	XM_345062.3	LOC365507	XP_345063.3	ILMN_1367464	0001240435	S	36	CACCCAGAAGATTCCCTGTGATTTTACGGAGACCTCCTCTGTTGCAGTTC	1|NW_047581.1	+	210866-210915		PREDICTED: Rattus norvegicus similar to FAT tumor suppressor homolog 4 (LOC365507), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078502-S	ILMN_282783	UIMC1	NM_001013884.1	NM_001013884.1		290997	62078502	NM_001013884.1	Uimc1	NP_001013906.1	ILMN_1358989	0004210270	S	2311	GGTCTCCAGTTTGCTGTGAGAGTTCTGACCCTGTTGTTTTCACCACCAGC	17	+	15644708-15644757	17p14	Rattus norvegicus ubiquitin interaction motif containing 1 (Uimc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659486-S	ILMN_50293	NCF2_PREDICTED	XM_344156.3	XM_344156.3		364018	109498021	XM_344156.3	Ncf2_predicted	XP_344157.3	ILMN_1365484	0006040064	S	1609	TGCTACCCAGCCAGAAGACCTGGAGTTTGTGGAAGGAGATGTGATCTTGG	13	+	67831562-67831611	13q21	PREDICTED: Rattus norvegicus neutrophil cytosolic factor 2 (predicted) (Ncf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662700-S	ILMN_53597	LOC498636	XM_573917.1	XM_573917.1		498636	62662700	XM_573917.1	LOC498636	XP_573917.1	ILMN_1364173	0005360068	S	3799	AGCAGCGATTATCTCTTGCTGTGGACCCACAGGACCAATCAGCCATCGAC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498636), mRNA.					
Rattus norvegicus	RefSeq	GI_41581459-S	ILMN_50513	HIG1	NM_080902.2	NM_080902.2		140937	41581459	NM_080902.2	Hig1	NP_543178.1	ILMN_1650956	0000110709	S	317	TCTGGGCCAAGCGTAAGCCTTAGAAGAGCTGGTGGCATGGGAAGTGCTTG				8q32	Rattus norvegicus hypoxia induced gene 1 (Hig1), mRNA.					
Rattus norvegicus	RefSeq	GI_47577802-S	ILMN_284759	OLR1229	NM_001000444.1	NM_001000444.1		300554	47577802	NM_001000444.1	Olr1229	NP_001000444.1	ILMN_1362452	0004570152	S	448	GCTGCACACTTGATGGGTGTCTCTTCTGCTTTTGTCCACACAGGGTGTAT	8	+	40477106-40477155	8q22	Rattus norvegicus olfactory receptor 1229 (Olr1229), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1229; ratchr8-40485425-40486366_ORF	Olr1229; ratchr8-40485425-40486366_ORF
Rattus norvegicus	RefSeq	GI_62652458-S	ILMN_70213	ANXA13_PREDICTED	XM_343245.3	XM_343245.3		362915	109480797	XM_343245.3	Anxa13_predicted	XP_343246.3	ILMN_1364259	0002480541	S	1032	CTCTGGACTGTCTGCTCATCAGTTTAAAGGGAGCCCGAGGCCCAGCAGCT	7	-	95071570-95071619	7q33	PREDICTED: Rattus norvegicus annexin A13 (predicted) (Anxa13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424203-S	ILMN_285402	GTF3C1	NM_133541.1	NM_133541.1		171063	19424203	NM_133541.1	Gtf3c1	NP_598225.1	ILMN_1374742	0001170397	S	6680	CAGAGTCTGCTCCTCTTAAGGTAGGGCATCCCAACTTGGCCTGAACTGAG	1	-	184702032-184702081	1q36	Rattus norvegicus general transcription factor III C 1 (Gtf3c1), mRNA.	A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIC contains three conserved subunits that associate with the proximal Pol III promoter element, and additional subunits that associate with sequence elements downstream of the promoter and are more diverged among species [goid 127] [evidence ISS]; A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIC contains three conserved subunits that associate with the proximal Pol III promoter element, and additional subunits that associate with sequence elements downstream of the promoter and are more diverged among species [goid 127] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase III transcription [goid 3709] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62661390-S	ILMN_62255	LOC498503	XM_573767.1	XM_573767.1		498503	62661390	XM_573767.1	LOC498503	XP_573767.1	ILMN_1372616	0001580168	S	539	CACGAATCGCCTCAAGAGAAAGAACAAGAAGTAGACACTTTCACCTTGGT				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC498503), mRNA.					
Rattus norvegicus	RefSeq	GI_62643660-S	ILMN_58656	LOC365814	XM_578024.1	XM_578024.1		365814	62643660	XM_578024.1	LOC365814	XP_578024.1	ILMN_1371961	0001190301	S	267	AGAGCAGATGTACTGGATTTAGCAGAGACCATGGCTGCTTCTGCAGATGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200009B18 (LOC365814), mRNA.					
Rattus norvegicus	RefSeq	GI_62649658-S	ILMN_270348	ZMYM1_PREDICTED	XM_001058926.1	XM_001058926.1		313604	109477263	XM_001058926.1	Zmym1_predicted	XP_001058926.1	ILMN_1351975	0001240021	S	3085	ACTTCGTACCACGGGGCAAGAGAAGCTCAGTAGCCTTGCTCTGATAGCTG				5q36	PREDICTED: Rattus norvegicus zinc finger, MYM domain containing 1 (predicted) (Zmym1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642601-S	ILMN_262963	LOC685068	XM_001062138.1	XM_001062138.1		685068	109472026	XM_001062138.1	LOC685068	XP_001062138.1	ILMN_1350789	0002120048	S	534	TTTGGACTCAGAGGCACACCAAAGCAGAGACCACCTGGGGCTGGATGCTG	4	-	77422408-77422457	4q24	PREDICTED: Rattus norvegicus similar to gem (nuclear organelle) associated protein 7 (LOC685068), mRNA.					
Rattus norvegicus	RefSeq	GI_62661892-S	ILMN_66725	LOC501989	XM_344365.2	XM_344365.2		501989	62661892	XM_344365.2	LOC501989	XP_344366.2	ILMN_1362184	0005270280	S	15	TTCTCCATCCTTCCATCTCTGCATAGGGATGAGCTAAGGTGGGCAGGTGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC501989), mRNA.					
Rattus norvegicus	RefSeq	GI_62667036-S	ILMN_63166	LOC497846	XM_579586.1	XM_579586.1		497846	62667036	XM_579586.1	LOC497846	XP_579586.1	ILMN_1354983	0002680619	S	321	TCCAGATTCTGGCAAATTCTTGGCGATACTCCAGTGCATTTACCAACCGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053946 (LOC497846), mRNA.					
Rattus norvegicus	RefSeq	GI_62658706-S	ILMN_64471	ZNHIT1_PREDICTED	XM_341051.2	XM_341051.2		360784	62658706	XM_341051.2	Znhit1_predicted	XP_341052.2	ILMN_1352127	0000780041	S	555	AGGATCTACCCATTCACCCAGCAAAGCTGTACCCTGCCGACCAAGGAGGG					PREDICTED: Rattus norvegicus zinc finger, HIT domain containing 1 (predicted) (Znhit1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661528-S	ILMN_270705	CENPJ_PREDICTED	XM_001062282.1	XM_001062282.1		305909	109502496	XM_001062282.1	Cenpj_predicted	XP_001062282.1	ILMN_1366291	0003120538	S	3704	CCCAATGGAACTCGGAAAGAAGTGAGTGCGGACGGGAAGAGCATCACGGT				15p12	PREDICTED: Rattus norvegicus centromere protein J (predicted) (Cenpj_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663347-S	ILMN_60377	LOC502117	XM_577559.1	XM_577559.1		502117	62663347	XM_577559.1	LOC502117	XP_577559.1	ILMN_1371082	0004120504	S	2925	GTCAAGAGGGATGGAGAGGAAGGACCTGCTGTTATCTTCACTTCGCCGCC				17p14	PREDICTED: Rattus norvegicus similar to beta actin (LOC502117), mRNA.					
Rattus norvegicus	RefSeq	GI_62655880	ILMN_296907	HAGHL	XM_001060358.1	XM_001060358.1		302995	109490393	XM_001060358.1	Haghl	XP_001060358.1	ILMN_1649821	0006770270	S	667	CCTTTCCTAAGGGTGACAGAGGATCCAGTCCGTGCGTTCACAGGCCAGGT				10q12	PREDICTED: Rattus norvegicus hydroxyacylglutathione hydrolase-like (Haghl), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658422-S	ILMN_265103	LOC684318	XM_001069848.1	XM_001069848.1		684318	109496556	XM_001069848.1	LOC684318	XP_001069848.1	ILMN_1363156	0004760273	S	1133	TCTCCAAGAACTCTGAGTCTGGGTACATCCTTTTCTATCAGTCTCGGGAC					PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 12 (LOC684318), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641035-S	ILMN_285185	CENTD2	XM_001066901.1	XM_001066901.1		361617	109462493	XM_001066901.1	Centd2	XP_001066901.1	ILMN_1361547	0001500035	S	4295	CCTGGGTGTAAAGAAGAAACTGCGGCCACCTACTTGCTGGGGCTTCACGG				1q32	PREDICTED: Rattus norvegicus centaurin, delta 2 (Centd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62652981-S	ILMN_272357	LOC690262	XM_001073895.1	XM_001073895.1		690262	109481210	XM_001073895.1	LOC690262	XP_001073895.1	ILMN_1368188	0004010332	S	724	GTGGATCGGAGTAGCGCGCAGCACTTGGAAGTCACTGTTGGAGACCTGAC	7	-	131772297-131772346	7q35	PREDICTED: Rattus norvegicus similar to YY1-associated factor 2 (LOC690262), mRNA.					
Rattus norvegicus	RefSeq	GI_62645558-S	ILMN_64798	ACTC1	XM_215801.3	XM_215801.3		29275	62645558	XM_215801.3	Actc1	XP_215801.3	ILMN_1363215	0004210017	S	1529	GAGTAGGCCTGGGGTGAAGAAGGTGTTCTGTCTGATACCCCCAGCATCAC				3q35	PREDICTED: Rattus norvegicus actin alpha  cardiac 1 (Actc1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IEA]; The actin part of any complex of actin, myosin, and accessory proteins [goid 42643] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; Formation of the actin-based thin filaments of myofibrils [goid 30240] [evidence ISS]; Formation of the actin-based thin filaments of myofibrils [goid 30240] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin. The myosin may be organized into filaments [goid 31032] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin. The myosin may be organized into filaments [goid 31032] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence ISS]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence IEA]; The process by which the anatomical structures of cardiac muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 55008] [evidence ISS]; The process by which the anatomical structures of cardiac muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 55008] [evidence IEA]; The multicellular organismal process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 60047] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718802-S	ILMN_264983	LOC686053	XM_001066356.1	XM_001066356.1		686053	109513227	XM_001066356.1	LOC686053	XP_001066356.1	ILMN_1354065	0003440576	S	688	GACCAGCAACGTCCAGACCCAGCATCTGGTCTCAGAAAGTGCAAGAGAGC	Un|NW_047874.1	+	137099-137126:137846-137867		PREDICTED: Rattus norvegicus hypothetical protein LOC686053 (LOC686053), mRNA.					
Rattus norvegicus	RefSeq	GI_47578080-S	ILMN_263630	OLR590	NM_001000658.1	NM_001000658.1		404858	47578080	NM_001000658.1	Olr590	NP_001000658.1	ILMN_1368835	0004070600	S	544	CCTCCCATCTTACTACTGTCCTGCTCAGACACACAGGTCAATGAGTTAGC	3	+	71585992-71586041	3q24	Rattus norvegicus olfactory receptor 590 (Olr590), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr590	Olr590
Rattus norvegicus	RefSeq	GI_62655250-S	ILMN_52302	LOC363259	XM_343599.2	XM_343599.2		363259	62655250	XM_343599.2	LOC363259	XP_343600.2	ILMN_1351812	0003140270	S	3355	ACCCGGAGTTATGCGTCCTCTTGAAAAAGCCGAAGACCCAGCGGTTCTGG				9q33	PREDICTED: Rattus norvegicus similar to sallimus CG1915-PC (predicted) (LOC363259), mRNA.					
Rattus norvegicus	RefSeq	GI_62651282-S	ILMN_277499	ZFYVE21_PREDICTED	XM_001072133.1	XM_001072133.1		362789	109480022	XM_001072133.1	Zfyve21_predicted	XP_001072133.1	ILMN_1367665	0000940687	S	1191	GCCTGTTTCTAGACTCTGTTCACTCTGTCACTAACCGGGGCCATGGACAG				6q32	PREDICTED: Rattus norvegicus zinc finger, FYVE domain containing 21 (predicted) (Zfyve21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394151	ILMN_266567	GNAO1	NM_017327.1	NM_017327.1		50664	8394151	NM_017327.1	Gnao1	NP_059023.1	ILMN_1650785	0000840463	S	1878	TCTGTACCAAGCCCCTGTCTAACCTACGACCCCAGAGTGACTGACGGCTG	19	-	11472157-11472206	19p12	Rattus norvegicus guanine nucleotide binding protein, alpha O (Gnao1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence TAS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]	Gnao1; RATBPGTPC	Gnao1; RATBPGTPC
Rattus norvegicus	RefSeq	GI_62718648-A	ILMN_284454	EMR1	NM_001007557.1	NM_001007557.1		316137	56090593	NM_001007557.1	Emr1	NP_001007558.1	ILMN_1376366	0006020278	S	2959	CATGGATAAGTGGAACCAAACTCCAAGAGCTTCATGCACCAAGGAGAAAC	Un|NW_047936.1	+	393382-393431		Rattus norvegicus EGF-like module containing, mucin-like, hormone receptor-like sequence 1 (Emr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577624-S	ILMN_267683	OLR654	NM_001000636.1	NM_001000636.1		404829	47577624	NM_001000636.1	Olr654	NP_001000636.1	ILMN_1368123	0004230008	S	866	ACAGTGAGATGAAAAATGCCATGCATAAGGTGTGGTCTCAGATGTCAAAC	3	-	72789028-72789077	3q24	Rattus norvegicus olfactory receptor 654 (Olr654), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr654	Olr654
Rattus norvegicus	RefSeq	GI_6978606-S	ILMN_277418	CAT	NM_012520.1	NM_012520.1		24248	6978606	NM_012520.1	Cat	NP_036652.1	ILMN_1369530	0006760348	S	1729	GCCTCACCAGTAATCATCGCTGGATGGAGTCTCCCCTGCTGAAGCGCAGA	3	+	88685451-88685500	3q32	Rattus norvegicus catalase (Cat), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor [goid 9060] [evidence ISS]; Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV [goid 9650] [evidence ISS]; Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV [goid 9650] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence ISS]; The chemical reactions and pathways involving hemoglobin, including its uptake and utilization [goid 20027] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB [goid 32088] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid [goid 4046] [evidence ISS]; Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O [goid 4096] [evidence TAS]; Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O [goid 4096] [evidence ISS]; Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O [goid 4096] [evidence IDA]; Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O [goid 4096] [evidence ISS]; Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O [goid 4096] [evidence IDA]; Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O [goid 4096] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which the peroxide group acts as a hydrogen or electron acceptor [goid 16684] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence ISS]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	RATCAT01; Cas1; RATCATL; CS1; Cs-1	RATCAT01; Cas1; RATCATL; CS1; Cs-1
Rattus norvegicus	RefSeq	GI_62661557-S	ILMN_49139	LOC290282	XM_214188.3	XM_214188.3		290282	62661557	XM_214188.3	LOC290282	XP_214188.3	ILMN_1353507	0001400035	S	572	CTGGGCCCCCAGTGAGAACAAGTTCGCCATGGATCTTCTCTGCCTATATC					PREDICTED: Rattus norvegicus similar to actin-related protein complex 1b (LOC290282), mRNA.					
Rattus norvegicus	RefSeq	GI_62658409-S	ILMN_286602	RPO1-3	NM_001037787.1	NM_001037787.1		360762	83649770	NM_001037787.1	Rpo1-3	NP_001032876.1	ILMN_1362729	0003290364	S	605	CGTAACTACCTTATCCTGAAGGCGTCGTGGTGAGAGCAAGCTGATTCCGC	12	+	8454629-8454678	12p11	Rattus norvegicus RNA polymerase 1-3 (Rpo1-3), mRNA.					
Rattus norvegicus	RefSeq	GI_62646334-S	ILMN_271848	STK4_PREDICTED	XM_001070199.1	XM_001070199.1		311622	109471270	XM_001070199.1	Stk4_predicted	XP_001070199.1	ILMN_1359117	0001450500	S	1631	GAACTCAGGAATGCACGCCAGTGGGAAGGGCTACTCGACAGTCATTGTGC				3q42	PREDICTED: Rattus norvegicus serine/threonine kinase 4 (predicted) (Stk4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52345434-S	ILMN_296762	ADK	NM_012895.3	NM_012895.3		25368	52345434	NM_012895.3	Adk	NP_037027.2	ILMN_1358322	0006550463	S	1555	AAGGTACAGAAACGTTGACGCACACCACATTGCCCCGCATAAGCTCTTCC	15	-	3071544-3071593	15p16	Rattus norvegicus adenosine kinase (Adk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence NAS]; Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence ISS]; Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence IEA]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence IDA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + adenosine = ADP + AMP [goid 4001] [evidence IDA]; Catalysis of the reaction: ATP + adenosine = ADP + AMP [goid 4001] [evidence ISS]; Catalysis of the reaction: ATP + adenosine = ADP + AMP [goid 4001] [evidence IDA]; Catalysis of the reaction: ATP + adenosine = ADP + AMP [goid 4001] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	AK	AK
Rattus norvegicus	RefSeq	GI_62661358-S	ILMN_54301	OLR1621_PREDICTED	XM_223986.3	XM_223986.3		290020	109501574	XM_223986.3	Olr1621_predicted	XP_223986.3	ILMN_1367111	0006550100	S	686	CTCTAGTGCTCAGAGCTGTGCTTCGAGTTCCTTCTGGTGCTGGTCGAACT	15	+	26324817-26324866	15p14	PREDICTED: Rattus norvegicus olfactory receptor 1621 (predicted) (Olr1621_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61889116-S	ILMN_57934	LAG3	NM_212513.2	NM_212513.2		297596	61889116	NM_212513.2	Lag3	NP_997678.2	ILMN_1349261	0002480044	S	1476	GCCTTGTTCCTCTTGGTGACCGGGGCCTTTGGCTTTCACCTGTGGAGAAG	4	-	161032038-161032087	4q42	Rattus norvegicus lymphocyte-activation gene 3 (Lag3), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45085] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45085] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity [goid 45954] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity [goid 45954] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation [goid 50868] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation [goid 50868] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with major histocompatibility complex class II molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42289] [evidence ISS]; Interacting selectively with major histocompatibility complex class II molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42289] [evidence IEA]; Interacting selectively with major histocompatibility complex class II molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42289] [evidence ISS]	MGC108901; CD223	MGC108901; CD223
Rattus norvegicus	RefSeq	GI_9506524-S	ILMN_301334	CST8	NM_019258.1	NM_019258.1		29679	9506524	NM_019258.1	Cst8	NP_062131.1	ILMN_1361611	0001690364	S	547	GTTGCAGCTTTCTGGTAGGAGCACTTCCCTGGAATGGTGAGTTCGACCTG	3	+	137564114-137564163	3q41	Rattus norvegicus cystatin 8 (cystatin-related epididymal specific) (Cst8), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]		 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653651-S	ILMN_63834	ALG9_PREDICTED	XM_345938.3	XM_345938.3		367083	109483457	XM_345938.3	Alg9_predicted	XP_345939.3	ILMN_1372506	0003990136	S	2222	GCAGAATGTGCTCACGGGAAGAGCTGAGAATCCTTGACTCGGTGTGTGCT	8	+	54193722-54193771	8q23	PREDICTED: Rattus norvegicus asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase) (predicted) (Alg9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929205-S	ILMN_298541	FDPS	NM_031840.1	NM_031840.1		83791	13929205	NM_031840.1	Fdps	NP_114028.1	ILMN_1350983	0007100605	S	802	CATGGCTGGAATTGATGGGGAGAAGGAACACGCTAATGCCCTGAAGATCC	2	-	181169689-181169735:181170177-181170179	2q34	Rattus norvegicus farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) (Fdps), mRNA.		The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence TAS]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]	Catalysis of the reaction: trans,trans-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate [goid 4311] [evidence IGI]; Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = diphosphate + trans,trans-farnesyl diphosphate [goid 4337] [evidence TAS]	Ac2-125	Ac2-125
Rattus norvegicus	RefSeq	GI_12018265-S	ILMN_49486	SYNJ2BP	NM_022599.2	NM_022599.2		64531	77732521	NM_022599.2	Synj2bp	NP_072121.2	ILMN_1360794	0002190671	S	4451	CCAGAAGGACTGACAGACAGCTAGAGAGGTTGTGTAGACATCCAGATGGG	6	-	105353412-105353461	6q24	Rattus norvegicus synaptojanin 2 binding protein (Synj2bp), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 31307] [evidence IDA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence ISS]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IEA]; Any process that establish the spatial arrangement of mitochondria within the cell [goid 48312] [evidence IDA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Omp25	Omp25
Rattus norvegicus	RefSeq	GI_47576762-S	ILMN_267693	OLR619	NM_001000338.1	NM_001000338.1		295843	47576762	NM_001000338.1	Olr619	NP_001000338.1	ILMN_1357027	0006420286	S	440	GCGCTGGGGGATTTCTGCATTCCTTCGGTCAGTTTCTCCTGGCAGTGTTC	3	+	72089615-72089664	3q24	Rattus norvegicus olfactory receptor 619 (Olr619), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr619; ratchr3-71985548-71986519_ORF	Olr619; ratchr3-71985548-71986519_ORF
Rattus norvegicus	RefSeq	GI_13929173-S	ILMN_282417	NCOA2	NM_031822.1	NM_031822.1		83724	13929173	NM_031822.1	Ncoa2	NP_114010.1	ILMN_1367018	0005360435	S	4049	CCTCAGACATTAACGGATGGGCACAGGGAAGCATGGGCGGAAACAGCATG	5	+	5270712-5270757:5271243-5271246	5q11	Rattus norvegicus nuclear receptor coactivator 2 (Ncoa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals generated as a consequence of a steroid hormone binding to its receptor [goid 30518] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS];  [goid 30374] [evidence ISS];  [goid 30375] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence IEA]	Tif2	Tif2
Rattus norvegicus	RefSeq	GI_62638394-S	ILMN_70180	HDDC2_PREDICTED	XM_341741.3	XM_341741.3		361462	109457669	XM_341741.3	Hddc2_predicted	XP_341742.1	ILMN_1361598	0003060072	S	539	CTGAGCTGGAGACAGAGAGAAATGCCAGCATGGCCACAACCCCGTCAGAG	1	-	26955576-26955625	1p11	PREDICTED: Rattus norvegicus HD domain containing 2 (predicted) (Hddc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659048-S	ILMN_265882	TMEM119_PREDICTED	XM_001080457.1	XM_001080457.1		304581	109497513	XM_001080457.1	Tmem119_predicted	XP_001080457.1	ILMN_1361610	0004200022	S	843	AAGGGGAACCAGAAGGGTCTTTCTCCTTAGCCCAGGAACCCCAGGGAGCA				12q16	PREDICTED: Rattus norvegicus transmembrane protein 119 homolog (predicted) (Tmem119_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605691-S	ILMN_274873	EIF1AD	NM_001008305.1	NM_001008305.1		293673	56605691	NM_001008305.1	Eif1ad	NP_001008306.1	ILMN_1369141	0004850673	S	2333	GGAGGGGGGCTGTTGTGGGTAGTTGGTTGAGCTTGGAGGCATGCATTAGC	1	+	208015590-208015639	1q43	Rattus norvegicus eukaryotic translation initiation factor 1A domain containing (Eif1ad), mRNA.		The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]	MGC94083	MGC94083
Rattus norvegicus	RefSeq	GI_62718398-S	ILMN_57757	LOC501391	XM_580189.2	XM_580189.2		501391	109513602	XM_580189.2	LOC501391	XP_580189.1	ILMN_1369519	0000610458	S	509	AGAAGCCCCAGGCTGTCTGCTTGATCTGAGAGTGCTAGGACATCCTGCTC	Un|NW_047887.1	-	69512-69561		PREDICTED: Rattus norvegicus hypothetical LOC501391 (LOC501391), mRNA.					
Rattus norvegicus	RefSeq	GI_27717926-S	ILMN_278480	RGD1561102_PREDICTED	XM_235021.1	XM_235021.1		299713	27717926	XM_235021.1	RGD1561102_predicted	XP_235021.1	ILMN_1362110	0005130102	S	75	CCTGGTCCACGATGGCCTAGCCAGAGGAATTCACGAAGCTGCCAAAGCCT	7	-	25403036-25403085	7q13	PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (predicted) (RGD1561102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640941-S	ILMN_283394	GARP_PREDICTED	XM_001065297.1	XM_001065297.1		293135	109462472	XM_001065297.1	Garp_predicted	XP_001065297.1	ILMN_1370614	0001410014	S	2062	TCCCAGGAGGAGGTGTCCCTGAGCCTAGTGCGTCCAGAGGACTGTGAGAA				1q32	PREDICTED: Rattus norvegicus glycoprotein A repetitions predominant (predicted) (Garp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657544-S	ILMN_55298	LOC362927	XM_343257.2	XM_343257.2		362927	62657544	XM_343257.2	LOC362927	XP_343258.2	ILMN_1349774	0001240072	S	1168	CCTCCTCTTGGACTGATGCTTGGAGAATGGAGGGGGAGGGAAAAAGTCCC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC362927), mRNA.					
Rattus norvegicus	RefSeq	GI_47578076-S	ILMN_291209	OLR623	NM_001000651.1	NM_001000651.1		404848	47578076	NM_001000651.1	Olr623	NP_001000651.1	ILMN_1356544	0003830072	S	747	TGGACCTTCCATCTTTTCCTACCTTAGACCACCTACCACTTACCCTGAGG	3	+	72154479-72154528	3q24	Rattus norvegicus olfactory receptor 623 (Olr623), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr623	Olr623
Rattus norvegicus	RefSeq	GI_13591929-S	ILMN_288049	SFRS11	NM_001035255.1	NM_001035255.1		502603	78214336	NM_001035255.1	Sfrs11	NP_001030332.1	ILMN_1350517	0004730601	S	2222	ACATCTCTACCAGTGAACGCAGCCCATCACTAGAAAATGACCTTGTCCTG	2	-	256154906-256154955	2q45	Rattus norvegicus splicing factor, arginine/serine-rich 11 (Sfrs11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116323; SFRS11	MGC116323; SFRS11
Rattus norvegicus	RefSeq	GI_62644601-S	ILMN_288049	SFRS11	NM_001035255.1	NM_001035255.1		502603	78214336	NM_001035255.1	Sfrs11	NP_001030332.1	ILMN_1372737	0004010041	S	593	GGGCTTCCAGGAACAAACTTGAACTCTCAGTCCCTTGCTGCAGACCAGCT	2	-	256165457-256165477:256165979-256166007	2q45	Rattus norvegicus splicing factor, arginine/serine-rich 11 (Sfrs11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116323; SFRS11	MGC116323; SFRS11
Rattus norvegicus	RefSeq	GI_62641654-S	ILMN_51330	LOC499294	XM_579943.1	XM_579943.1		499294	62641654	XM_579943.1	LOC499294	XP_579943.1	ILMN_1368497	0005550452	S	109	AGATTCAGATAAGATTCTTCAGGCAGGACACAGAACAGCCAGACCTGCTG					PREDICTED: Rattus norvegicus LOC499294 (LOC499294), mRNA.					
Rattus norvegicus	RefSeq	GI_50511327-S	ILMN_279461	MRGPRX2L	NM_001002285.1	NM_001002285.1		404645	50511327	NM_001002285.1	Mrgprx2l	NP_001002285.1	ILMN_1360392	0002260706	S	314	GCCTGTGTGTCATGAGGCCATTCTGGTATCGCTGCCAACTTCCAAGGCAT	1	-	98335622-98335671	1q22	Rattus norvegicus MAS-related G protein-coupled receptor, member X2-like (Mrgprx2l), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgB2	MrgB2
Rattus norvegicus	RefSeq	GI_62652070-S	ILMN_50627	NTS_PREDICTED	XM_216884.4	XM_216884.4		299757	109480537	XM_216884.4	Nts_predicted	XP_216884.3	ILMN_1350873	0005550403	S	257	GGAAACTTCCCCTTGTCCTGGATGACTTTAGCTTGGAAGCGCTGCTGACC	7	-	40478173-40478222	7q13	PREDICTED: Rattus norvegicus neurotensin (predicted) (Nts_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641536-S	ILMN_292923	FOXI2	XM_001056035.1	XM_001056035.1		246073	109463066	XM_001056035.1	Foxi2	XP_001056035.1	ILMN_1360990	0007100438	S	641	TCAGAAGGAAGAGGAGAAGGAGAGGGGAGACTAGCGAGGCCGCTGTGCCT				1q41	PREDICTED: Rattus norvegicus forkhead box I2 (Foxi2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648015-S	ILMN_48280	RGD1560852_PREDICTED	XM_575638.2	XM_575638.2		500288	109472463	XM_575638.2	RGD1560852_predicted	XP_575638.2	ILMN_1367622	0004150692	S	2085	GAACACTTTAGGCCATATTCTATTGCTTGTGCAGCCTACTGTTCTTGGTC	4	+	148940878-148940927	4q42	PREDICTED: Rattus norvegicus similar to THUMP domain containing 3 (predicted) (RGD1560852_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660201-S	ILMN_53950	SEPT6_PREDICTED	XM_223227.4	XM_223227.4		305227	109499523	XM_223227.4	Sept6_predicted	XP_223227.4	ILMN_1374338	0000110711	S	2061	CTTGTGCCTGGTGAGTGAGCTTGAGGTTTCCAATGCTGAGCAGCCTGTGC	14	-	16464687-16464736	14p22	PREDICTED: Rattus norvegicus septin 6 (predicted) (Sept6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27693638-S	ILMN_53950	SEPT6_PREDICTED	XM_223227.4	XM_223227.4		305227	109499523	XM_223227.4	Sept6_predicted	XP_223227.4	ILMN_2040763	0004730762	S	345	CCCAGCTACTCACAACGAACCAGGTGTCCGGTTAAAAGCCAGAAGTTACG	14	-	16492008-16492057	14p22	PREDICTED: Rattus norvegicus septin 6 (predicted) (Sept6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741537-S	ILMN_288627	CLDND1	NM_001006955.1	NM_001006955.1		288182	55741537	NM_001006955.1	Cldnd1	NP_001006956.1	ILMN_1368590	0005220164	S	1719	GAGCTGGGGGTCCTACCACCACAAGATCTAAAGCTGTGGCCACCTACTGA	11	-	42694971-42695020	11q12	Rattus norvegicus claudin domain containing 1 (Cldnd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94479	MGC94479
Rattus norvegicus	RefSeq	GI_27693137-S	ILMN_161777	LOC310647	XM_227422.1	XM_227422.1			27693137	XM_227422.1	LOC310647		ILMN_2040475	0001340392	S	1505	TTCGCACTGTGACACCCGGGGCCATGTCTTCTTTCCCCCTGTTCAGTTGG										
Rattus norvegicus	RefSeq	GI_47577976-S	ILMN_282811	OLR1104	NM_001000906.1	NM_001000906.1		405216	47577976	NM_001000906.1	Olr1104	NP_001000906.1	ILMN_1368806	0004780167	S	911	GCTGCCAGCATTTTGGGTATGTTGGTCGGAGACGCAGGGTGAAGTCTTGA				7q36	Rattus norvegicus olfactory receptor 1104 (Olr1104), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1104	Olr1104
Rattus norvegicus	RefSeq	GI_31077125-S	ILMN_280621	ROBO4	NM_181375.1	NM_181375.1		300518	31077125	NM_181375.1	Robo4	NP_852040.1	ILMN_1349581	0005420735	S	2819	AGCCCAGGGAAGCTGACTGTGTCTTTACTGGTATGTGGGCTCGCCCGCCT	8	+	38664955-38665004	8q21	Rattus norvegicus roundabout homolog 4 (Drosophila) (Robo4), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62078690-A	ILMN_288046	LOC304396	NM_001013981.1	NM_001013981.1		304396	62078690	NM_001013981.1	LOC304396	NP_001014003.1	ILMN_1376647	0002260164	S	2368	GGCCAATGCAGCCTTCACCTACCTCACTGCTCTGACGGACTCCAACATCG	12	+	21658269-21658318	12q12	Rattus norvegicus similar to hypothetical protein DKFZp434K1815 (LOC304396), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660657-S	ILMN_274483	RGD1309634_PREDICTED	XM_001059938.1	XM_001059938.1		305452	109500769	XM_001059938.1	RGD1309634_predicted	XP_001059938.1	ILMN_1373620	0001850670	S	656	TGCAAGGCCCACCACAAGCACACCACTTTGTCTCCCTACTCCTGGAAGAG				14q21	PREDICTED: Rattus norvegicus hypothetical LOC305452 (predicted) (RGD1309634_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660656-S	ILMN_274483	RGD1309634_PREDICTED	XM_001059938.1	XM_001059938.1		305452	109500769	XM_001059938.1	RGD1309634_predicted	XP_001059938.1	ILMN_1354883	0003780195	S	4766	GCGCTGTTTGTGTTTGACCCCCTGACTTGTAGCCAGCTTGTGTAAGACCC				14q21	PREDICTED: Rattus norvegicus hypothetical LOC305452 (predicted) (RGD1309634_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577048-S	ILMN_292021	OLR298	NM_001000235.1	NM_001000235.1		293597	47577048	NM_001000235.1	Olr298	NP_001000235.1	ILMN_1367881	0003440148	S	669	ACGCTCAACTGAGGGCAAGCAACGAGCCTTTTCTACCTGTTCTGCACATC	1	-	200380558-200380607	1q41	Rattus norvegicus olfactory receptor 298 (Olr298), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr298	Olr298
Rattus norvegicus	RefSeq	GI_62641061-S	ILMN_67733	LOC499219	XM_574512.1	XM_574512.1		499219	62641061	XM_574512.1	LOC499219	XP_574512.1	ILMN_1361424	0001240156	S	363	CGGGAAGAGCAGATAGCAGCAGCGCGGGACATGTATAGAGAGGTGCGGAA					PREDICTED: Rattus norvegicus similar to LRRG00121 (LOC499219), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47576634-S	ILMN_276359	OLR856	NM_001000515.1	NM_001000515.1		313546	47576634	NM_001000515.1	Olr856	NP_001000515.1	ILMN_1364739	0004540242	S	442	TGTGCCGCCTACGGTGTGGTGGGTGGCCTGTGCTACACCTTCTTTGCTAT	5	-	139153471-139153520	5q36	Rattus norvegicus olfactory receptor 856 (Olr856), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr856	Olr856
Rattus norvegicus	RefSeq	GI_62656010-S	ILMN_273497	RGD1560191_PREDICTED	XM_001070702.1	XM_001070702.1		497894	109490616	XM_001070702.1	RGD1560191_predicted	XP_001070702.1	ILMN_2039125	0006580091	S	2452	TCCGTCCTTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATATCG				10q21	PREDICTED: Rattus norvegicus similar to Zinc finger protein 62 homolog (Zfp-62) (ZT3) (predicted) (RGD1560191_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644360-S	ILMN_49337	LOC365925	XM_345285.2	XM_345285.2		365925	62644360	XM_345285.2	LOC365925	XP_345286.2	ILMN_1364629	0002900064	S	675	GCCCACCAGACTGAAAAGTTTAGGAAGAAACGCAAGCCAGGAGAGGACGC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC365925), mRNA.					
Rattus norvegicus	RefSeq	GI_62654184-S	ILMN_67337	STAG1_PREDICTED	XM_236609.4	XM_236609.4		315958	109483808	XM_236609.4	Stag1_predicted	XP_236609.3	ILMN_1354004	0007100110	S	3961	CTGGAGTAAGGCATGCTGTTCGGGGTCTAATGGAGGAAGATGCTGAGCCC	8	+	105908514-105908532:105909055-105909085	8q31	PREDICTED: Rattus norvegicus stromal antigen 1 (predicted) (Stag1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663715-S	ILMN_64663	LOC498773	XM_574059.1	XM_574059.1		498773	62663715	XM_574059.1	LOC498773	XP_574059.1	ILMN_1372035	0005890537	S	505	CTGGACCGAATCCGGGAATGTGGATATTTAAAATCCTGGGAGGCCCAAAA					PREDICTED: Rattus norvegicus similar to CG6715-PA (LOC498773), mRNA.					
Rattus norvegicus	RefSeq	GI_57222327-S	ILMN_277296	PFN4	NM_001009503.1	NM_001009503.1		494222	57222327	NM_001009503.1	Pfn4	NP_001009503.1	ILMN_1363559	0004210711	S	1512	GGGCAAGTCCACTGAGAGTCTTACCTCCAAGTCCCCATACATCTTGCCAG	Un|NW_047888.1	-	16807-16856		Rattus norvegicus profilin family, member 4 (Pfn4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658722-S	ILMN_267128	DTX2	XM_001070652.1	XM_001070652.1		304591	109497083	XM_001070652.1	Dtx2	XP_001070652.1	ILMN_1370972	0000050619	S	2530	GCAGGGACTACCACACTCCCAGCTTCTGGTCAGCTTCTCGTACCTCAGAT				12q12	PREDICTED: Rattus norvegicus deltex 2 homolog (Drosophila) (Dtx2), mRNA.		The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648678-S	ILMN_58583	LOC500412	XM_575774.1	XM_575774.1		500412	62648678	XM_575774.1	LOC500412	XP_575774.1	ILMN_1373147	0000070082	S	822	TTCCTGAAGTGCCAGACCACGGATCCCTCTGACCTGGTGATGGATCTCCG				5q13	PREDICTED: Rattus norvegicus similar to TEX14 protein (LOC500412), mRNA.					
Rattus norvegicus	RefSeq	GI_56119165-S	ILMN_285674	CIR	NM_001007799.1	NM_001007799.1		362149	56119165	NM_001007799.1	Cir	NP_001007800.1	ILMN_1359605	0006350546	S	1105	GGTTCTGACCGGAAGTCCAGAAGCCACCAGCACAGTCCAGAGAGGAAAGG	3	-	55789281-55789330	3q22	Rattus norvegicus CBF1 interacting corepressor (Cir), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94623; 1700023b02rik	MGC94623; 1700023b02rik
Rattus norvegicus	RefSeq	GI_8393501-S	ILMN_294231	GSTM1	NM_017014.1	NM_017014.1		24423	8393501	NM_017014.1	Gstm1	NP_058710.1	ILMN_1365716	0002850066	S	698	TTGCTACACTGGCACTCACAGGGAGGACCTGTCCACATTGGATCCTGCAG	2	-	203575752-203575801	2q34	Rattus norvegicus glutathione S-transferase, mu 1 (Gstm1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence IEP]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IDA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]	GSTA3	GSTA3
Rattus norvegicus	RefSeq	GI_62666714-S	ILMN_267610	UBQLN2_PREDICTED	XM_001061090.1	XM_001061090.1		317396	109511617	XM_001061090.1	Ubqln2_predicted	XP_001061090.1	ILMN_1355483	0006520020	S	3181	TGTGCAGCCTGAAGGATCAGTGTAGTGACGCCAGGAAAGTGCTTTTTACC				Xq14	PREDICTED: Rattus norvegicus ubiquilin 2 (predicted) (Ubqln2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164088-S	ILMN_281507	SAA4	NM_001009478.1	NM_001009478.1		365245	57164088	NM_001009478.1	Saa4	NP_001009478.1	ILMN_1370307	0003610068	S	1507	TGCCAAAGCCAGGTCCCTAGGTGGAAGACCAACCCCAAAGGAGTAGAAAC	1	-	97278613-97278662	1q22	Rattus norvegicus serum amyloid A4, constitutive (Saa4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]	Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]	MGC108857	MGC108857
Rattus norvegicus	RefSeq	GI_57528336-S	ILMN_267867	TMED9	NM_001009703.1	NM_001009703.1		361207	57528336	NM_001009703.1	Tmed9	NP_001009703.1	ILMN_2040330	0001740356	S	1250	TCTCACGGTTGTCCTTTTGGGGCTTGAGCAGCCGGTATCAAACCAAGCAG	17	-	15070786-15070835	17p14	Rattus norvegicus transmembrane emp24 protein transport domain containing 9 (Tmed9), mRNA.	A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]		RGD1307627; MGC95048	RGD1307627; MGC95048
Rattus norvegicus	RefSeq	GI_62651159-S	ILMN_49851	CPSF2_PREDICTED	XM_216766.4	XM_216766.4		299256	109478567	XM_216766.4	Cpsf2_predicted	XP_216766.4	ILMN_1373200	0006370121	S	2379	TGCGGGAAGGGATTCAAGCGGAATTTGTAGGGGGCGTACTTGTCTGCAAC	6	+	126271265-126271314	6q32	PREDICTED: Rattus norvegicus cleavage and polyadenylation specific factor 2 (predicted) (Cpsf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090256-S	ILMN_291740	SDPR	NM_001007712.1	NM_001007712.1		316384	56090256	NM_001007712.1	Sdpr	NP_001007713.1	ILMN_1350094	0005340131	S	1878	ATTGGAAGGGGGCTGAAAGACTGTGCTGACGGGGAGCTAATAGCACTGGG	9	-	47373237-47373286	9q22	Rattus norvegicus serum deprivation response (Sdpr), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine [goid 1786] [evidence ISS]; Interacting selectively with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine [goid 1786] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine [goid 1786] [evidence ISS]	MGC94054	MGC94054
Rattus norvegicus	RefSeq	GI_62657687-S	ILMN_62881	RGD1563599_PREDICTED	XM_573265.2	XM_573265.2		498066	109492953	XM_573265.2	RGD1563599_predicted	XP_573265.2	ILMN_1363643	0005670687	S	1010	GGACCCGTGCCCTCCGAAACAGCTTGGTGTATGTGAATCCCTATCTCACC	11	+	36535143-36535192	11q11	PREDICTED: Rattus norvegicus similar to putative SH3BGR protein (predicted) (RGD1563599_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639033-S	ILMN_56829	LOC292615	XM_218287.3	XM_218287.3		292615	62639033	XM_218287.3	LOC292615	XP_218287.3	ILMN_1369815	0004590538	S	8124	CAGCAGACTCTATTGGTGCTCAGGCCCCGCCGAAACCCGATGATGGTAGT				1q21	PREDICTED: Rattus norvegicus similar to pheromone receptor (LOC292615), mRNA.					
Rattus norvegicus	RefSeq	GI_62647444-S	ILMN_67147	LOC500191	XM_575543.1	XM_575543.1		500191	62647444	XM_575543.1	LOC500191	XP_575543.1	ILMN_1353440	0001240215	S	40	AGCAGGTCGTCATATTTGTACTGCTTTGGTTGTCTGGTGCCGATGGGAAC				4q32	PREDICTED: Rattus norvegicus similar to monoclonal antibody 17-1A, light chain (LOC500191), mRNA.					
Rattus norvegicus	RefSeq	GI_16757997-S	ILMN_57400	ADMR	NM_053302.2	NM_053302.2		29307	77020253	NM_053302.2	Admr	NP_445754.2	ILMN_1371872	0000770541	S	1256	TGCAGCGGATCTGCACACCCACGCCATCAGAAACGTGCAGGCCTCCTCTC	7	-	67741542-67741591	7q22	Rattus norvegicus adrenomedullin receptor (Admr), mRNA.					
Rattus norvegicus	RefSeq	GI_62658750-S	ILMN_66893	LOC288589	XM_213751.3	XM_213751.3		288589	62658750	XM_213751.3	LOC288589	XP_213751.3	ILMN_1358207	0003170215	S	2455	GTAGCAAGGAGTGTGACCCCTTTGAAGCCACGATGATCTACTGCGAGCAG				12q12	PREDICTED: Rattus norvegicus similar to Rasa4 protein (LOC288589), mRNA.					
Rattus norvegicus	RefSeq	GI_62665876-S	ILMN_269479	LOC690315	XM_001070957.1	XM_001070957.1		690315	109509285	XM_001070957.1	LOC690315	XP_001070957.1	ILMN_1361408	0002760465	S	354	TCTGCTGGGATTCCTGGGCAGCATGTTTTTCCTGGGACAGGCCCTCATGG	20	-	13164779-13164828	20p12	PREDICTED: Rattus norvegicus similar to Der1-like domain family, member 3, transcript variant 2 (LOC690315), mRNA.					
Rattus norvegicus	RefSeq	GI_62649527-S	ILMN_291851	RGD1308616_PREDICTED	XM_001069457.1	XM_001069457.1		362573	109477034	XM_001069457.1	RGD1308616_predicted	XP_001069457.1	ILMN_1354682	0005550670	S	7217	AGGAGCTCTTAGAGGCGGTCCATGCCAAGTCCATTGCCGACATTGACCCC				5q36	PREDICTED: Rattus norvegicus similar to KIAA0467 protein (predicted) (RGD1308616_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666789-S	ILMN_274980	RGD1562231_PREDICTED	XM_001066370.1	XM_001066370.1		302661	109511693	XM_001066370.1	RGD1562231_predicted	XP_001066370.1	ILMN_1362453	0001170138	S	3364	ACCTAGTGACAAGGATGACAGTTCTCCAGGCTTTTCCCATGAAGAGCCAG				Xq21	PREDICTED: Rattus norvegicus similar to Ofd1 protein (predicted) (RGD1562231_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649162-S	ILMN_265205	LOC679664	XR_005538.1	XR_005538.1		679664	109475065	XR_005538.1	LOC679664		ILMN_1357810	0006180079	S	502	ACAGGAACGGTAGGACCAGCAAGACGATCACCGTGTCTGACGTGAACAAC	5	+	104085944-104085993	5q31	PREDICTED: Rattus norvegicus similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (P31) (p1B15) (LOC679664), mRNA.					
Rattus norvegicus	RefSeq	GI_62649551-S	ILMN_299396	RGD1564921_PREDICTED	XM_001073803.1	XM_001073803.1		366461	109477122	XM_001073803.1	RGD1564921_predicted	XP_001073803.1	ILMN_1371171	0002970056	S	277	GCAGACGTGGTGCCTAAGACGGCAGAGAACTTTAGGCAGTTCTGCACTGG				5q36	PREDICTED: Rattus norvegicus similar to peptidyl prolyl isomerase H (predicted) (RGD1564921_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655803	ILMN_290415	DLG4	NM_019621.1	NM_019621.1		29495	9665226	NM_019621.1	Dlg4	NP_062567.1	ILMN_1650748	0004730040	S	2724	TCTTCTCAAAGGTGGTTTTTGGGGGGAGACGCATGGGGGCTCTCCTGAGG	10	+	56890308-56890357	10q24	Rattus norvegicus discs, large homolog 4 (Drosophila) (Dlg4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence ISS]; Loosely bound to the surface of the plasma membrane that faces the cytoplasm, but not integrated into the hydrophobic region [goid 31234] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus [goid 32281] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence NAS]; Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence ISS]; The process by which voltage-gated ion channels become localized to distinct subcellular domains in the neuron. Specific targeting, clustering, and maintenance of these channels in their respective domains are essential to achieve high conduction velocities of action potential propagation [goid 45161] [evidence TAS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]	PSD95; Sap90	PSD95; Sap90
Rattus norvegicus	RefSeq	GI_13928693-S	ILMN_273127	IL3	NM_031513.1	NM_031513.1		24495	13928693	NM_031513.1	Il3	NP_113701.1	ILMN_1370167	0000540148	S	343	AGTGTTGTATTCCTGCAGCTGCGAGCGACTCTGTGTTGCCAGGTGTCTAC	10	-	39684851-39684875:39684995-39685019	10q22	Rattus norvegicus interleukin 3 (Il3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of myeloid leukocyte differentiation [goid 2763] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IMP]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IMP]; The process of apoptosis in myeloid cells [goid 33028] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the interleukin-3 receptor [goid 5135] [evidence IMP]; Interacting selectively with the interleukin-3 receptor [goid 5135] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657844-S	ILMN_57406	IFT57_PREDICTED	XM_221496.4	XM_221496.4		303968	109493199	XM_221496.4	Ift57_predicted	XP_221496.3	ILMN_1351336	0006860685	S	1345	ATCGGGGTTGTGGAGCACACGCTGCTTCAGTCAAAGCTCAAGGAGAAGTG	11	-	52252929-52252978	11q21	PREDICTED: Rattus norvegicus intraflagellar transport 57 homolog (Chlamydomonas) (predicted) (Ift57_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27660966-S	ILMN_273134	NOL6_PREDICTED	XM_001068034.1	XM_001068034.1		313167	109476362	XM_001068034.1	Nol6_predicted	XP_001068034.1	ILMN_2040647	0004880195	S	3299	TTTAAGGCCTCCAGCCTAAAGGGACGCATGGTGGTGTCTCGAGGTGGGGA				5q22	PREDICTED: Rattus norvegicus nucleolar protein family 6 (RNA-associated) (predicted) (Nol6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656729	ILMN_65613	RGD1561541_PREDICTED	XM_340871.3	XM_340871.3		360591	109488735	XM_340871.3	RGD1561541_predicted	XP_340872.3	ILMN_1650573	0004200040	S	1117	GCTGGCTCATCCTCAAAGCCCTACTCAATCTCTGCCGCTTTCTACAAGCA	10	-	75363227-75363276	10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B930067F20 gene (predicted) (RGD1561541_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394327-S	ILMN_281304	SOD1	NM_017050.1	NM_017050.1		24786	8394327	NM_017050.1	Sod1	NP_058746.1	ILMN_1353544	0001070132	S	306	ACATGGCGGTCCAGCGGATGAAGAGAGGCATGTTGGAGACCTGGGCAATG	11	-	29812008-29812031:29812720-29812745	11q11	Rattus norvegicus superoxide dismutase 1, soluble (Sod1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence ISS]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of production of a cytokine [goid 1819] [evidence ISS]; A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function [goid 1895] [evidence ISS]; A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function [goid 1895] [evidence ISS]; The process of regulating the proliferation and elimination of myeloid cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 2262] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence TAS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IDA]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence TAS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence IDA]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence IDA]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients [goid 31667] [evidence IDA]; The process by which the structure and material content of mature peripheral nervous system myelin is kept in a functional state [goid 32287] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IDA]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45541] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IMP]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence IMP]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence IDA]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence IDA]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The multicellular organismal process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 60047] [evidence ISS]; The multicellular organismal process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 60047] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle contraction [goid 60087] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]	Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IDA]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IDA]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence TAS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IMP]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage [goid 16209] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with the enzyme protein phosphatase 2B [goid 30346] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IMP]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]	CuZnSOD	CuZnSOD
Rattus norvegicus	RefSeq	GI_62647943-A	ILMN_298738	CLEC4A1	NM_001005890.2	NM_001005890.2		362430	70778852	NM_001005890.2	Clec4a1	NP_001005890.1	ILMN_1376716	0005420722	S	768	TAAAGGATGGGGCTGGAGTGTCGCCCCTTGTGACGGTTATCACAGGCTGG	4	+	159436105-159436154	4q42	Rattus norvegicus C-type lectin domain family 4, member a1 (Clec4a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Dcir4; MGC112884	Dcir4; MGC112884
Rattus norvegicus	RefSeq	GI_38454241-S	ILMN_269227	EIF3H	NM_198751.1	NM_198751.1		299899	38454241	NM_198751.1	Eif3h	NP_942046.1	ILMN_1355332	0002690338	S	961	CTGCCAGGATGGACTCGCTGCTCATTGCAGGCCAGATTAACACTTACTGC	7	-	88069894-88069918:88072189-88072213	7q31	Rattus norvegicus eukaryotic translation initiation factor 3, subunit H (Eif3h), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]	MGC72941	MGC72941
Rattus norvegicus	RefSeq	GI_62644692-S	ILMN_280381	IL1F10_PREDICTED	XM_001077097.1	XM_001077097.1		362077	109469513	XM_001077097.1	Il1f10_predicted	XP_001077097.1	ILMN_1373560	0004070133	S	735	GGCCTGGAGAGAAGGAGTCAGAGGGAGACTAGGGCAAACATTGCTAGATG				3p13	PREDICTED: Rattus norvegicus interleukin 1 family, member 10 (predicted) (Il1f10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641391-S	ILMN_286778	RGD1564153_PREDICTED	XM_001079646.1	XM_001079646.1		361659	109462993	XM_001079646.1	RGD1564153_predicted	XP_001079646.1	ILMN_1354076	0005890253	S	1495	TCGTGGGTGTGCTCTGTAAGCTGGCAAACTAGGAGGCAGGGAGTGGCTGA				1q37	PREDICTED: Rattus norvegicus similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (predicted) (RGD1564153_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642927	ILMN_68358	RGD1565217_PREDICTED	XM_574851.2	XM_574851.2		499528	109464389	XM_574851.2	RGD1565217_predicted	XP_574851.1	ILMN_1650734	0004280563	S	1013	TTCTTCCTGGAGCACTTCACACATTCGCGCGTGGAGGCCGGTCAGGTTGA	2	+	44379971-44380020	2q14	PREDICTED: Rattus norvegicus similar to uracil-DNA glycosylase 2 (predicted) (RGD1565217_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639299-S	ILMN_289856	RYR1	XM_001078539.1	XM_001078539.1		114207	109461599	XM_001078539.1	Ryr1	XP_001078539.1	ILMN_1355014	0004540026	S	11114	GCCGGACAGCTCTGACTGAAAAGAGCAAACTGGATGAGGACTACCTGTAC				1q21	PREDICTED: Rattus norvegicus ryanodine receptor 1, skeletal muscle (Ryr1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IEA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]	Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639301-S	ILMN_289856	RYR1	XM_001078539.1	XM_001078539.1		114207	109461599	XM_001078539.1	Ryr1	XP_001078539.1	ILMN_1358258	0001240347	S	4622	TCCAGGTGGAGCCCAACACAAAGCTGTTTCCTGCCGTCTTTGTCCTGCCC				1q21	PREDICTED: Rattus norvegicus ryanodine receptor 1, skeletal muscle (Ryr1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IEA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]	Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639297-S	ILMN_289856	RYR1	XM_001078539.1	XM_001078539.1		114207	109461599	XM_001078539.1	Ryr1	XP_001078539.1	ILMN_1366978	0001450368	S	15166	GCTGGGGACAGGTGATCCTGAACTAGACCAATAAAGCCTCTGCTACACCC				1q21	PREDICTED: Rattus norvegicus ryanodine receptor 1, skeletal muscle (Ryr1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IEA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]	Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649766-S	ILMN_69166	ARID1A_PREDICTED	XM_216340.4	XM_216340.4		297867	109475578	XM_216340.4	Arid1a_predicted	XP_216340.4	ILMN_1352949	0003190324	S	7726	CCCAGCTACCCCTTTATAGTATGGCGAGTTAACAAGTTGGTGACCTGCAC	5	+	151398214-151398263	5q36	PREDICTED: Rattus norvegicus AT rich interactive domain 1A (Swi1 like) (predicted) (Arid1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646017-S	ILMN_64355	LOC499907	XM_580030.1	XM_580030.1		499907	62646017	XM_580030.1	LOC499907	XP_580030.1	ILMN_1360072	0005860546	S	1522	GCCCTTTCTTCGCATTCAAATTCAGTGGTCAGGCCTTGGCACTAACCGGC					PREDICTED: Rattus norvegicus LOC499907 (LOC499907), mRNA.					
Rattus norvegicus	RefSeq	GI_57164060-S	ILMN_274685	V1RE25	NM_001009517.1	NM_001009517.1		494237	57164060	NM_001009517.1	V1re25	NP_001009517.1	ILMN_1369967	0000360113	S	839	CTTTGGGACCTTTTGTGATGAATCATGATTCACCTTTTCCGAGATTATGC	1	+	57225810-57225859	1q12	Rattus norvegicus vomeronasal 1 receptor, E25 (V1re25), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50845395-A	ILMN_272278	LY6G6C	NM_001001969.1	NM_001001969.1		294241	50845395	NM_001001969.1	Ly6g6c	NP_001001969.1	ILMN_1376653	0005080279	S	718	GGAAGAACTCCTGTCTTGTTTCCAGGGAGCGATGCCCAAAAGACCCACTG	20	-	3818054-3818103	20p12	Rattus norvegicus lymphocyte antigen 6 complex, locus G6C (Ly6g6c), mRNA.					
Rattus norvegicus	RefSeq	GI_6981313-S	ILMN_283967	OTX1	NM_013109.1	NM_013109.1		25646	6981313	NM_013109.1	Otx1	NP_037241.1	ILMN_1362584	0000610300	S	1068	GGACTATAAGGACCAAGCCTCATGGCGGTTCCAGGTCTTGTGAGCCCAGG				14q22	Rattus norvegicus orthodenticle homeobox 1 (Otx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	OTX1X	OTX1X
Rattus norvegicus	RefSeq	GI_62664265-S	ILMN_279360	LOC680470	XM_001057332.1	XM_001057332.1		680470	109506512	XM_001057332.1	LOC680470	XP_001057332.1	ILMN_1349857	0002900286	S	2775	CCGGGGCTGCAACGAAAATCACCCCGGAATTTAAGGTGCTCCAACTGCGG	18	+	30655840-30655889	18p11	PREDICTED: Rattus norvegicus similar to protocadherin gamma subfamily B, 6 (LOC680470), mRNA.					
Rattus norvegicus	RefSeq	GI_62651278-S	ILMN_269906	RGD1304719	NM_001037769.1	NM_001037769.1		299341	83642815	NM_001037769.1	RGD1304719	NP_001032858.1	ILMN_1357524	0000780022	S	518	CTTCATGGGGAAGGTGGCCCTGGAGAGGATGTGGAGCAAGCTGAAGCAGA	6	+	136519819-136519868	6q32	Rattus norvegicus similar to RIKEN cDNA 2810002N01 (RGD1304719), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence IEA]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence ISS]		MGC124853	MGC124853
Rattus norvegicus	RefSeq	GI_62657731-S	ILMN_64991	LOC501770	XM_580231.1	XM_580231.1		501770	62657731	XM_580231.1	LOC501770	XP_580231.1	ILMN_1372123	0004570338	S	706	AGGCCAAAGCCTTGTTCAGTCATGATGCCAGTGCCCCTTTTCTGTCCAGC					PREDICTED: Rattus norvegicus LOC501770 (LOC501770), mRNA.					
Rattus norvegicus	RefSeq	GI_62661432-S	ILMN_284873	RGD1311300	NM_001030043.1	NM_001030043.1		364378	71896372	NM_001030043.1	RGD1311300	NP_001025214.1	ILMN_1355009	0002230181	S	889	TCCCTCACAGTGCTGGGACTACGACTGCTGCTCGCCAAGACTGTTGCCAT	15	+	32192541-32192590	15p13	Rattus norvegicus similar to T cell receptor V delta 6 (RGD1311300), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC116392	MGC116392
Rattus norvegicus	RefSeq	GI_62664074-S	ILMN_59049	RGD1311659_PREDICTED	XM_344649.3	XM_344649.3		364814	109506330	XM_344649.3	RGD1311659_predicted	XP_344650.3	ILMN_1349948	0006200347	S	424	GGTATCCCAAGATTGTATCAGACAGATCCCTCCGGTACTTACCACGCTTG	18	+	5996982-5997031	18p13	PREDICTED: Rattus norvegicus similar to Proteasome subunit alpha type 7-like (predicted) (RGD1311659_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662597-S	ILMN_64397	LOC361143	XM_346940.2	XM_346940.2		361143	62662597	XM_346940.2	LOC361143	XP_346941.2	ILMN_1359856	0000730168	S	10	ACCCCTCGGAAGATGCCGACAAGCCCAAAGGAAAGCGGAGTGTCCTGTGT				16p11	PREDICTED: Rattus norvegicus hypothetical LOC361143 (LOC361143), mRNA.					
Rattus norvegicus	RefSeq	GI_62646010-S	ILMN_288240	RGD1563136_PREDICTED	XM_001057954.1	XM_001057954.1		296230	109470985	XM_001057954.1	RGD1563136_predicted	XP_001057954.1	ILMN_1365057	0000450390	S	530	GAGACTCTAAGACTGACTGGGCTGTTACCCACCACTTGCAGACATTAATC				3q41	PREDICTED: Rattus norvegicus similar to Cystatin-related protein 2 precursor (Prostatic 22 kDa glycoprotein P22K15) (predicted) (RGD1563136_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646761-S	ILMN_284575	RGD1561754_PREDICTED	XR_008431.1	XR_008431.1		499998	109473048	XR_008431.1	RGD1561754_predicted		ILMN_1373426	0007100026	S	1075	TCTTGATGCTCCCTGTTTGGCGTGGAGGCTGCGAGAGGAAGATGCCTTTC				4q12	PREDICTED: Rattus norvegicus similar to high mobility group protein homolog HMG4 (predicted) (RGD1561754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54234051	ILMN_282741	PMPCA	NM_001003673.1	NM_001003673.1		296588	54234051	NM_001003673.1	Pmpca	NP_001003673.1	ILMN_1649996	0003060440	S	1465	AAGCCTGCTGTGGCCGCTCTGGGTGATTTGACTGACCTGCCCACGTATGA	3	+	4568463-4568512	3p13	Rattus norvegicus peptidase (mitochondrial processing) alpha (Pmpca), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence TAS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93916	MGC93916
Rattus norvegicus	RefSeq	GI_27721856-S	ILMN_63220	CCR1L1_PREDICTED	XM_236742.2	XM_236742.2		301088	109484142	XM_236742.2	Ccr1l1_predicted	XP_236742.1	ILMN_1354739	0001410112	S	999	GGTAGACCGAGTACAGAGGTCCAGTTCCACGTCTCCATCCACAGGGGAAA	8	-	128728167-128728216	8q32	PREDICTED: Rattus norvegicus chemokine (C-C motif) receptor 1-like 1 (predicted) (Ccr1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651692-S	ILMN_263314	LOC686771	XM_001075624.1	XM_001075624.1		686771	109481526	XM_001075624.1	LOC686771	XP_001075624.1	ILMN_1374125	0004200446	S	215	CGGCCATGTGCTCAGCAGAGACCCAGAGGCAAGGACCACAAAGTATGGGT					PREDICTED: Rattus norvegicus hypothetical protein LOC686771 (LOC686771), mRNA.					
Rattus norvegicus	RefSeq	GI_62664923-S	ILMN_68407	LOC498919	XM_579883.1	XM_579883.1		498919	62664923	XM_579883.1	LOC498919	XP_579883.1	ILMN_1350889	0005220463	S	817	GGGCATTCGAGCAAACTGCATAACGACTCTGCTGAGGAAGGCTGGGAGGC					PREDICTED: Rattus norvegicus LOC498919 (LOC498919), mRNA.					
Rattus norvegicus	RefSeq	GI_62643041-S	ILMN_51333	MATP_PREDICTED	XM_226834.3	XM_226834.3		310152	62643041	XM_226834.3	Matp_predicted	XP_226834.3	ILMN_1374805	0004590471	S	1362	TGCTGAGTACCACCGTGAGGAGGAGAAAGAGCAGCAGGAAGTCCCAGGAG				2q16	PREDICTED: Rattus norvegicus membrane associated transporter protein (predicted) (Matp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664678-S	ILMN_54393	LOC291411	XM_225706.4	XM_225706.4		291411	109506793	XM_225706.4	LOC291411	XP_225706.3	ILMN_1372761	0004280017	S	3187	CGAGGCCGAGTTTGTCCATGTTGTGGCCATCTCCTTCACAGCACTGATCC	18	-	77621319-77621368	18q12.3	PREDICTED: Rattus norvegicus similar to Potential phospholipid-transporting ATPase IIB (LOC291411), mRNA.					
Rattus norvegicus	RefSeq	GI_62665844-S	ILMN_268382	LOC690211	XM_001070526.1	XM_001070526.1		690211	109509272	XM_001070526.1	LOC690211	XP_001070526.1	ILMN_1365046	0006650722	S	4768	CTAGCTGTGTGAACCAGCGGAGGCAAAGCTGGCTGCAGGGTTCCTGCCCT	20	+	12788110-12788159	20p12	PREDICTED: Rattus norvegicus similar to Disco-interacting protein 2 homolog, transcript variant 2 (LOC690211), mRNA.					
Rattus norvegicus	RefSeq	GI_13928893-S	ILMN_282290	SFMBT1	NM_031647.1	NM_031647.1		58967	13928893	NM_031647.1	Sfmbt1	NP_113835.1	ILMN_1353884	0001980195	S	3170	AAAGAGGACATAGCTTTAAGTCGGCACTGGCTTGGGATGGTGCCTAAGGC	16	+	6240983-6241005	16p16	Rattus norvegicus Scm-like with four mbt domains 1 (Sfmbt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]		Sfmbt; MGC93349	Sfmbt; MGC93349
Rattus norvegicus	RefSeq	GI_62645552-S	ILMN_288087	RGD1561237_PREDICTED	XM_001080546.1	XM_001080546.1		366158	109470549	XM_001080546.1	RGD1561237_predicted	XP_001080546.1	ILMN_1356235	0000430142	S	915	CCACCTGCAGTATATAAACCCGGACTTTCTCGTGGACACCCTGCCCATGC				3q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700095F04 (predicted) (RGD1561237_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648482-S	ILMN_294642	TUBA8	NM_001024339.1	NM_001024339.1		500377	66730464	NM_001024339.1	Tuba8	NP_001019510.1	ILMN_1365069	0002060014	S	1162	TACTGTCGTGCCAGGAGGAGACCTGGCCAAAGTCCAGCGAGCAGTATGCA	4|NW_047708.1	-	46088-46137		Rattus norvegicus tubulin, alpha 8 (Tuba8), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649514-S	ILMN_55649	LOC366454	XM_345571.2	XM_345571.2		366454	62649514	XM_345571.2	LOC366454	XP_345572.2	ILMN_1350145	0006180600	S	2143	CCCACTTCAGTGACCATACCTTCTATGAGGGGGAGAAGCCCTACAAATGC					PREDICTED: Rattus norvegicus similar to HesB protein (LOC366454), mRNA.					
Rattus norvegicus	RefSeq	GI_62665328-S	ILMN_277733	GAN_PREDICTED	XM_001078420.1	XM_001078420.1		307893	109508962	XM_001078420.1	Gan_predicted	XP_001078420.1	ILMN_1374751	0004120164	S	2540	GCCGAGAGAGTTCTGGGTGGTGCTGTGAGAGCGGAGGGAGTTCAGTCATA				19q12	PREDICTED: Rattus norvegicus giant axonal neuropathy (predicted) (Gan_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777755-S	ILMN_263148	OLR1002	NM_001001371.1	NM_001001371.1		288881	47777755	NM_001001371.1	Olr1002	NP_001001371.1	ILMN_1358215	0006130131	S	648	CACCTACATTGCCAGGACGATTCTAAAGATCCCTTCCACCGGCCAGAGGA	7	-	6493875-6493924	7q11	Rattus norvegicus olfactory receptor 1002 (Olr1002), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1002	Olr1002
Rattus norvegicus	RefSeq	GI_62642802-S	ILMN_61863	RGNEF_PREDICTED	XM_342179.3	XM_342179.3		361882	109464297	XM_342179.3	Rgnef_predicted	XP_342180.3	ILMN_1364830	0004200368	S	5537	AGCCACAGACACTCATAACAGAAGCAAAACTAACTCCCCCGATGGCGGCC	2	-	28493663-28493712	2q12	PREDICTED: Rattus norvegicus Rho-guanine nucleotide exchange factor (predicted) (Rgnef_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663952-S	ILMN_293632	MSRB2	NM_001031660.1	NM_001031660.1		361286	72255540	NM_001031660.1	Msrb2	NP_001026830.1	ILMN_1352320	0006450438	S	893	TGGACCAGATGAGAGATCCCAGTGTTGGAGAGGAGGATGGGAGTGGCCGA	17	+	93442525-93442574	17q12.3	Rattus norvegicus methionine sulfoxide reductase B2 (Msrb2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues [goid 30091] [evidence ISS]; The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues [goid 30091] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-methionine R-oxide + thioredoxin = L-methionine + thioredoxin disulfide; can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin [goid 318] [evidence ISS]; Catalysis of the reaction: L-methionine R-oxide + thioredoxin = L-methionine + thioredoxin disulfide; can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin [goid 318] [evidence IEA]; Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin [goid 8113] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114588; Mrsb	MGC114588; Mrsb
Rattus norvegicus	RefSeq	GI_62646810-S	ILMN_59529	LOC500015	XM_575369.2	XM_575369.2		500015	109471719	XM_575369.2	LOC500015	XP_575369.1	ILMN_1370746	0005420403	S	4364	ACATGTGTAGGTCCAGGCAGCCAAGCACACTCTTCTACTTGGGGCAGAAG	4	-	28181123-28181172	4q13	PREDICTED: Rattus norvegicus similar to mKIAA2005 protein (LOC500015), mRNA.					
Rattus norvegicus	RefSeq	GI_62655612-S	ILMN_280598	LOC688631	XM_001067693.1	XM_001067693.1		688631	109487683	XM_001067693.1	LOC688631	XP_001067693.1	ILMN_1368711	0006100372	S	2607	TGAGGAGCTGAAGCAGAACAAGCCACAACCTGATGCGGCCACAGCCATGG	10	+	1226736-1226785	10q11	PREDICTED: Rattus norvegicus similar to DNA repair endonuclease XPF (DNA excision repair protein ERCC-4) (LOC688631), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929139-S	ILMN_281221	GMEB2	NM_031803.1	NM_031803.1		83635	13929139	NM_031803.1	Gmeb2	NP_113991.1	ILMN_1355432	0005270164	S	1696	GTAGCTGGCAGGGAGGCTAAAATCCTTCCAACATGGGCTGGCTGACTGCC	3	-	170394997-170395040:170395041-170395046	3q43	Rattus norvegicus glucocorticoid modulatory element binding protein 2 (Gmeb2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659150-S	ILMN_48973	LOC498208	XM_579796.1	XM_579796.1		498208	62659150	XM_579796.1	LOC498208	XP_579796.1	ILMN_1372925	0000110609	S	1008	CATTCTCCACGTGATGAGTATGGAATGACAAACGCCGTGCTGCTATCCCG					PREDICTED: Rattus norvegicus LOC498208 (LOC498208), mRNA.					
Rattus norvegicus	Unigene	Rn.13655	ILMN_161460	RN.13655	Rn.13655		Rn.13655		51866426	CR754469			ILMN_1530362	0000050707	S	726	CATATTCATCATTACAAAACATTAAATTCCACCTTCGGGAAAAAATAAGC					CR754469 Rattus norvegicus muscle Sprague-Dawley Rattus norvegicus cDNA clone GP0AAA7ZG11, mRNA					
Rattus norvegicus	RefSeq	GI_21687009	ILMN_289569	CACNG4	NM_080692.1	NM_080692.1		140725	21687009	NM_080692.1	Cacng4	NP_542423.1	ILMN_1649760	0007050059	S	822	GTCCATGTACACGCTGTCCAGAGAACCCCTCAAGGTGACCACAGCTGCCA	10	-	97139509-97139558	10q32.1	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 4 (Cacng4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654322-S	ILMN_51360	LOC501055	XM_576470.1	XM_576470.1		501055	62654322	XM_576470.1	LOC501055	XP_576470.1	ILMN_1359968	0005550167	S	144	GAGAACGGGACTGGTTGGTGGACTCGGCTGCCTATGCTTCACAGGTGCAT				8q32	PREDICTED: Rattus norvegicus similar to glutaminyl-tRNA synthetase (LOC501055), mRNA.					
Rattus norvegicus	RefSeq	GI_62645715-S	ILMN_49428	RGD1565946_PREDICTED	XM_578143.2	XM_578143.2		502648	109468396	XM_578143.2	RGD1565946_predicted	XP_578143.2	ILMN_1357543	0002940333	S	1202	TATGTCACACAGCCAACCTGAGCCAACTCACCCAGGAGCTGTACCCTGCC	3	+	71183640-71183689	3q24	PREDICTED: Rattus norvegicus similar to PRAMEl6 (predicted) (RGD1565946_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758667-S	ILMN_263728	EBF1	NM_053820.1	NM_053820.1		116543	16758667	NM_053820.1	Ebf1	NP_446272.1	ILMN_1374239	0006100070	S	1944	ACTGAGATTGGAAAGGGGACCTGCCAGAGCGGGGTGTTGGATAGAGTCGG	10	+	30162923-30162972	10q21	Rattus norvegicus early B-cell factor 1 (Ebf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ebf; Olf1	Ebf; Olf1
Rattus norvegicus	RefSeq	GI_60223052-S	ILMN_301281	SEPT1	NM_001012460.1	NM_001012460.1		293507	60223052	NM_001012460.1	Sept1	NP_001012478.1	ILMN_1370913	0002690408	S	1256	CTTTAATCAGGTGCCTCCAATCCGGAAGTTTAAGGCCCAGCCGACTCCGC	1	-	186474826-186474875	1q36	Rattus norvegicus septin 1 (Sept1), mRNA.	Any of several heterooligomeric complexes containing multiple septins [goid 31105] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109124	MGC109124
Rattus norvegicus	RefSeq	GI_58865821-A	ILMN_268286	TMEM22	NM_001012126.1	NM_001012126.1		315957	58865821	NM_001012126.1	Tmem22	NP_001012126.1	ILMN_1376675	0005700400	S	1155	CGCCTTGGACAAATTCCACCCAGCTTTGGTCAGCACAGTACAACATCTGG	8	-	105416415-105416464	8q31	Rattus norvegicus transmembrane protein 22 (Tmem22), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62646013-S	ILMN_64171	LOC362234	XM_347036.2	XM_347036.2		362234	62646013	XM_347036.2	LOC362234	XP_347037.2	ILMN_1356112	0006590390	S	375	GTCATGCACCAACATCATGCCCTCCCTATGCTACCCACATGAAGACACAG					PREDICTED: Rattus norvegicus hypothetical LOC362234 (LOC362234), mRNA.					
Rattus norvegicus	RefSeq	GI_42627868-S	ILMN_280340	VKORC1L1	NM_203338.1	NM_203338.1		399684	42627868	NM_203338.1	Vkorc1l1	NP_976083.1	ILMN_1360001	0001780494	S	847	TGTAGCCCTAGCCCCCGGTCCTTAACCGTAAAGTAAGCAGCCATTGCTAG	12	-	27765006-27765055	12q13	Rattus norvegicus vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62653093-S	ILMN_56766	ARID2_PREDICTED	XM_345867.2	XM_345867.2		366980	62653093	XM_345867.2	Arid2_predicted	XP_345868.2	ILMN_1350994	0000940026	S	6335	GAACAAGTTGCCAGCAGTGCCAGAGACCATGGAGAAGGAGGAGCAGGAGG				7q35	PREDICTED: Rattus norvegicus AT rich interactive domain 2 (Arid-rfx like) (predicted) (Arid2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656775-S	ILMN_67866	COX11_PREDICTED	XM_213433.3	XM_213433.3		287621	62656775	XM_213433.3	Cox11_predicted	XP_213433.3	ILMN_1372090	0005270082	S	458	CGGGAAGGACGTACCCAAGGTCACTAAAGAAAACTGCATGGGGAAGCAGG					PREDICTED: Rattus norvegicus COX11 homolog, cytochrome c oxidase assembly protein (yeast) (predicted) (Cox11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506818-S	ILMN_268933	ITIH4	NM_019369.1	NM_019369.1		54404	9506818	NM_019369.1	Itih4	NP_062242.1	ILMN_1369575	0005860537	S	2823	GGAGCATTGTTTGCTACCTGCCATGTTGTCCTCGTATGCAGGCGGATGAC	16	+	6334644-6334693	16p16	Rattus norvegicus inter alpha-trypsin inhibitor, heavy chain 4 (Itih4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine [goid 30212] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577946-S	ILMN_279124	OLR1125	NM_001000881.1	NM_001000881.1		405180	47577946	NM_001000881.1	Olr1125	NP_001000881.1	ILMN_1367623	0006590592	S	460	CTAGATGCTTTGCTCCACACTTTGATGGCACTGCGCCTGTCATTCTGCAC	8	+	16972624-16972673	8q13	Rattus norvegicus olfactory receptor 1125 (Olr1125), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1125	Olr1125
Rattus norvegicus	RefSeq	GI_62649211-S	ILMN_270341	RGD1559932_PREDICTED	XM_233161.3	XM_233161.3		298221	62649211	XM_233161.3	RGD1559932_predicted	XP_233161.3	ILMN_1362689	0006520619	S	60	CTGTCTAGGATGTAACCTGCCTCGCACTCATAACCTCACAGCCCTGAAAC	5	+	108328801-108328850	5q32	PREDICTED: Rattus norvegicus similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) (predicted) (RGD1559932_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641258-S	ILMN_54422	LOC308976	XM_219312.3	XM_219312.3		308976	62641258	XM_219312.3	LOC308976	XP_219312.3	ILMN_1370490	0006110736	S	1609	GCAAGGTCTGGGACGGCTGCTATTGTTCCTATTCTTCTGTCTGGTGGCAC				1q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110005O21 (predicted) (LOC308976), mRNA.					
Rattus norvegicus	RefSeq	GI_62663374-S	ILMN_50929	LOC497713	XM_579466.1	XM_579466.1		497713	62663374	XM_579466.1	LOC497713	XP_579466.1	ILMN_1372350	0005050411	S	162	TAGCGCCGGACGGGAAGCACCAGAGCCGGCATGAAATTGGAGGTATTTGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022858 (LOC497713), mRNA.					
Rattus norvegicus	RefSeq	GI_62662773-S	ILMN_60927	WRN_PREDICTED	XM_214361.2	XM_214361.2		290806	62662773	XM_214361.2	Wrn_predicted	XP_214361.1	ILMN_1373342	0003450373	S	975	GCCTGTACGTTCACTGTCAGGCAATCTCAGTGCACCGGCCCAGTCAGTGA					PREDICTED: Rattus norvegicus Werner syndrome (predicted) (Wrn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718843-S	ILMN_66595	LOC501495	XM_580201.1	XM_580201.1		501495	62718843	XM_580201.1	LOC501495	XP_580201.1	ILMN_1357655	0002450739	S	581	CCCAGTATCACAGGGGGCTGGGGCCATTTAGTAAACCCTAGAGGTAATGA					PREDICTED: Rattus norvegicus LOC501495 (LOC501495), mRNA.					
Rattus norvegicus	RefSeq	GI_62639274-S	ILMN_288704	RGD1305932_PREDICTED	XM_001078356.1	XM_001078356.1		292755	109461585	XM_001078356.1	RGD1305932_predicted	XP_001078356.1	ILMN_1369881	0001500441	S	779	TTGTCCACTTCCAGCACAAGACGAAGAACCGCATGGAGCCTGGGGGACTG				1q21	PREDICTED: Rattus norvegicus similar to F-box only protein 6 (F-box/G-domain protein 2) (predicted) (RGD1305932_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643869-S	ILMN_269062	CGN_PREDICTED	XM_001059265.1	XM_001059265.1		310655	109467174	XM_001059265.1	Cgn_predicted	XP_001059265.1	ILMN_1368283	0005340619	S	3939	CAGCGTCTACGACCCCTCATCCATTGCATCACTGCTTACTGAGAGCAACC				2q34	PREDICTED: Rattus norvegicus cingulin (predicted) (Cgn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654158-S	ILMN_66136	LOC501041	XM_576453.1	XM_576453.1		501041	62654158	XM_576453.1	LOC501041	XP_576453.1	ILMN_1353081	0005570026	S	0	ATGGGGTCAGTGAGGGAGAAGGAATTCCACCTGGTGGCCATGAAGTTCCT				8q31	PREDICTED: Rattus norvegicus similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18) (LOC501041), mRNA.					
Rattus norvegicus	RefSeq	GI_9506372-S	ILMN_272775	ADCY4	NM_019285.1	NM_019285.1		54223	9506372	NM_019285.1	Adcy4	NP_062158.1	ILMN_1358403	0001400671	S	3193	GGGTTACACATGCTACAGCCGAGGTGTCATCAAGGTCAAGGGCAAAGGGC	15	-	33930641-33930690	15p13	Rattus norvegicus adenylate cyclase 4 (Adcy4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IDA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]	MGC93493	MGC93493
Rattus norvegicus	RefSeq	GI_62651471-S	ILMN_65691	LOC503059	XM_578582.1	XM_578582.1		503059	62651471	XM_578582.1	LOC503059	XP_578582.1	ILMN_1351510	0004540092	S	2728	TGCAGGCATGGGATCTTTGTCCTGGGTCACTTACAGCCAATGTCACCAGC					PREDICTED: Rattus norvegicus similar to maebl (LOC503059), mRNA.					
Rattus norvegicus	RefSeq	GI_47575872-S	ILMN_302869	CDIPT	NM_138899.2	NM_138899.2		192260	47575872	NM_138899.2	Cdipt	NP_620254.1	ILMN_1358667	0002480100	S	1790	CTTTCTCGTCTCTGCCTGGAGTGAAAAGTAGCCTGGCATGTGGTAACTGC	1	+	186157342-186157391	1q36	Rattus norvegicus CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) (Cdipt), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence TAS]; The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence IDA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The chemical reactions and pathways involving CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. It is a common intermediate in phospholipid biosynthesis [goid 46341] [evidence IDA]	Catalysis of the reaction: CDP-diacylglycerol + myo-inositol = CMP + phosphatidyl-1D-myo-inositol [goid 3881] [evidence IGI]; Catalysis of the reaction: CDP-diacylglycerol + myo-inositol = CMP + phosphatidyl-1D-myo-inositol [goid 3881] [evidence IEA]; Catalysis of the reaction: CDP-diacylglycerol + myo-inositol = CMP + phosphatidyl-1D-myo-inositol [goid 3881] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IPI]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor) [goid 16780] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IPI]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IDA]; Interacting selectively with an alcohol, any of a class of alkyl compounds containing a hydroxyl group [goid 43178] [evidence IPI]	Pis; Pis1	Pis; Pis1
Rattus norvegicus	RefSeq	GI_16923977-S	ILMN_268140	SLC26A2	NM_057127.1	NM_057127.1		117267	16923977	NM_057127.1	Slc26a2	NP_476468.1	ILMN_1371434	0001580736	S	2491	GCAGGGATCCACACACTGAAAGAAGTTCGCCGGGATTATGAAGCCATTGG	18	-	57171150-57171199	18q12.1	Rattus norvegicus solute carrier family 26 (sulfate transporter), member 2 (Slc26a2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IDA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence IEA]; Catalysis of the transfer of sulfate ions (SO4 2-) from one side of a membrane to the other [goid 15116] [evidence IDA]	Dtdst	Dtdst
Rattus norvegicus	RefSeq	GI_62645379-S	ILMN_266748	C1QTNF4_PREDICTED	XM_001077863.1	XM_001077863.1		311184	109470298	XM_001077863.1	C1qtnf4_predicted	XP_001077863.1	ILMN_1367440	0003940594	S	1407	CCGGAGCATGACTACCTGCCCAGCACGCCTGGACTCTACCAATAAAGTGG				3q24	PREDICTED: Rattus norvegicus C1q and tumor necrosis factor related protein 4 (predicted) (C1qtnf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662170-S	ILMN_54033	LOC361108	XM_341394.2	XM_341394.2		361108	62662170	XM_341394.2	LOC361108	XP_341395.2	ILMN_1356867	0006290452	S	1370	AGGAAGCAGAAGCCTGTGACCTCGGAAAGTGGCGCTGCCGTGTGGAGAAT				16p16	PREDICTED: Rattus norvegicus similar to Ac2-086 (LOC361108), mRNA.					
Rattus norvegicus	RefSeq	Rn.6147	ILMN_272220	SNN	XM_001052997.1	XM_001052997.1		29140	109489568	XM_001052997.1	Snn	XP_001052997.1	ILMN_1530514	0002470315	S	2829	TGACATTCAAGTTCATTTTGTAGACCACTGAGAAAATCTTTATTTACAAT				10q11	PREDICTED: Rattus norvegicus stannin (Snn), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62660622-S	ILMN_290479	JAKMIP1	NM_001033894.1	NM_001033894.1		305434	76559914	NM_001033894.1	Jakmip1	NP_001029066.1	ILMN_1368977	0003870427	S	2190	TCGGGGTAACTTCACTGCCTTAACATGTCCTGGGGAGGATGCTCGCGACG	14	-	79235057-79235106	14q21	Rattus norvegicus janus kinase and microtubule interacting protein 1 (Jakmip1), mRNA.	Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence IEA]; Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence IEA]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence ISS]	MGC125191	MGC125191
Rattus norvegicus	RefSeq	GI_62658720-S	ILMN_65262	LOC360790	XM_341056.2	XM_341056.2		360790	62658720	XM_341056.2	LOC360790	XP_341057.2	ILMN_1367268	0006110735	S	997	CCTCAAACTGTCCTCAGGGTCACACTCTCCCAATTACCACAGCGGGCTCC				12q12	PREDICTED: Rattus norvegicus similar to uroplakin IIIb (predicted) (LOC360790), mRNA.					
Rattus norvegicus	RefSeq	GI_62659878-S	ILMN_53324	FBXO28_PREDICTED	XM_223125.4	XM_223125.4		305105	109498284	XM_223125.4	Fbxo28_predicted	XP_223125.1	ILMN_1371881	0005390017	S	1619	GACTTGGGTATTGAGGTGAAGGGTGGCAGGAAGGACTGAGAGAGTGGGCG	13	-	98317145-98317194	13q26	PREDICTED: Rattus norvegicus F-box protein 28 (predicted) (Fbxo28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34862336-S	ILMN_270657	CFD	XM_001077068.1	XM_001077068.1		54249	109481617	XM_001077068.1	Cfd	XP_001077068.1	ILMN_1371456	0000060471	S	654	GGTCGAAGCTGTGGTTACGTGGGGATCTCGAGTCTGTGGCAACCGGAGAA				7q11	PREDICTED: Rattus norvegicus complement factor D (adipsin) (Cfd), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence IEA]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IMP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948419-S	ILMN_277529	BCAP31	NM_001004224.1	NM_001004224.1		293852	51948419	NM_001004224.1	Bcap31	NP_001004224.1	ILMN_1356289	0005340372	S	797	CGTGGTCCCTCAGACAAGAAGGAGGAGTAAAGACTTGGTTTTTCCCTGCC	X	-	159584041-159584061:159584062-159584090	Xq37	Rattus norvegicus B-cell receptor-associated protein 31 (Bcap31), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Bap31; MGC94221	Bap31; MGC94221
Rattus norvegicus	RefSeq	GI_25742771-S	ILMN_49066	KCNA2	NM_012970.2	NM_012970.2		25468	77404428	NM_012970.2	Kcna2	NP_037102.1	ILMN_1370175	0004570154	S	2256	CACCGACTTACAGGTTTCCAAAGATGAGAGTCACCCATGGAGCCAGCATC	2	+	202564255-202564304	2q34	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 2 (Kcna2), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IMP]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IMP]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15271] [evidence IMP]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	BK2; NGK1	BK2; NGK1
Rattus norvegicus	RefSeq	GI_62650687-S	ILMN_49274	SNX6_PREDICTED	XM_343062.3	XM_343062.3		362738	109478171	XM_343062.3	Snx6_predicted	XP_343063.2	ILMN_2038940	0004920475	S	1260	GGAGACACATAGGCTTCACTCCACCTTCTGTTGAAAAGGGCTGCCTTCAG	6	-	75053571-75053609:75053610-75053620	6q23	PREDICTED: Rattus norvegicus sorting nexin 6 (predicted) (Snx6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173797-S	ILMN_286285	YT521	NM_133423.1	NM_133423.1		170956	19173797	NM_133423.1	Yt521	NP_596914.1	ILMN_1360442	0004070128	S	2868	TGGCTTGGAATGTTCAGTTTTGCGTGTGTGGCAGCAGAAGATAACCCCAC	14	-	22805158-22805207	14p21	Rattus norvegicus splicing factor YT521-B (Yt521), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IDA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62654727-S	ILMN_49449	LOC501104	XM_576519.1	XM_576519.1		501104	62654727	XM_576519.1	LOC501104	XP_576519.1	ILMN_1354175	0001050050	S	982	TCATTCAGTACCACAATTCTGCTGAGAGCACTGCGGCCTGTGGTGTCGAG					PREDICTED: Rattus norvegicus similar to suppressor of Ty 3 homolog (LOC501104), mRNA.					
Rattus norvegicus	RefSeq	GI_62658690-S	ILMN_63315	LOC501827	XM_577239.1	XM_577239.1		501827	62658690	XM_577239.1	LOC501827	XP_577239.1	ILMN_1354239	0002470195	S	28	CAGAGGGAGCAGGCAAAGGCAGGAAGAGTTCACAGGTCATGTTCTTCTCC					PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (LOC501827), mRNA.					
Rattus norvegicus	RefSeq	GI_62638189-A	ILMN_282316	KATNA1	NM_001004217.2	NM_001004217.2		292464	67514575	NM_001004217.2	Katna1	NP_001004217.1	ILMN_1376655	0006420519	S	1489	GGCCATGAGACGCCGTATTGAGGGTCTAACCCCAGAAGAAATCCGGAACC	1	+	2436228-2436277	1p13	Rattus norvegicus katanin p60 (ATPase-containing) subunit A1 (Katna1), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence TAS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence TAS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell [goid 31122] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell [goid 31122] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; Progression through interphase, the stage of cell cycle between successive rounds of mitosis. Canonically, interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs [goid 51329] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP [goid 8568] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP [goid 8568] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with dynein, the multisubunit protein complex that is associated with microtubules [goid 45502] [evidence ISS]; Interacting selectively with dynein, the multisubunit protein complex that is associated with microtubules [goid 45502] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	katanin	katanin
Rattus norvegicus	RefSeq	Rn.8222	ILMN_48786	RGD1564895_PREDICTED	XM_231564.4	XM_231564.4		312192	109471814	XM_231564.4	RGD1564895_predicted	XP_231564.4	ILMN_1530397	0002640102	S	4885	TTAATAAAGGAGAATTATGGAAAGAAAATAGGTAACACCAGCAAATTATA	4	+	56803321-56803370	4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4631427C17 (predicted) (RGD1564895_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652553-S	ILMN_51932	LOC500884	XM_580132.1	XM_580132.1		500884	62652553	XM_580132.1	LOC500884	XP_580132.1	ILMN_1362101	0006200048	S	953	CTGCTGGGCTCTGTGGGGAAATCAAGCTTCCGCTGGCCTTCGTGCTGCCT					PREDICTED: Rattus norvegicus LOC500884 (LOC500884), mRNA.					
Rattus norvegicus	RefSeq	GI_17105341-S	ILMN_277961	NELF	NM_057190.1	NM_057190.1		117536	17105341	NM_057190.1	Nelf	NP_476538.1	ILMN_1351055	0002680110	S	2512	GTGTGGTAGGGCCAACTGGGGCTGGAGGCAAGAACCTCACCAACATTGTG	3	+	5209942-5209991	3p13	Rattus norvegicus nasal embryonic LHRH factor (Nelf), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Jac; Jacob; MGC105348	Jac; Jacob; MGC105348
Rattus norvegicus	RefSeq	GI_6981327-S	ILMN_298703	PCSK6	NM_012999.1	NM_012999.1		25507	6981327	NM_012999.1	Pcsk6	NP_037131.1	ILMN_1350031	0001850369	S	3772	CTCTGTTCTCGGGTGGACACTGCTCTGGCCCAGTATAGTACAAGCCTACG	1	+	120476879-120476913	1q22	Rattus norvegicus proprotein convertase subtilisin/kexin type 6 (Pcsk6), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks [goid 5796] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The specification of the anterior/posterior axis of the embryo by products of genes expressed in the zygote; exemplified in insects by the gap genes, pair rule genes and segment polarity gene cascade [goid 7354] [evidence ISS]; The specification of the anterior/posterior axis of the embryo by products of genes expressed in the zygote; exemplified in insects by the gap genes, pair rule genes and segment polarity gene cascade [goid 7354] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence IEA]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence IEA]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence IEP]; The generation of a mature nerve growth factor by proteolysis of a precursor [goid 32455] [evidence ISS]; The appearance of nerve growth factor due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels [goid 32902] [evidence IEA]; The appearance of nerve growth factor due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels [goid 32902] [evidence ISS]; The regulated release of a substance by a cell [goid 32940] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; Interacting selectively with nerve growth factor [goid 48406] [evidence IEA]; Interacting selectively with nerve growth factor [goid 48406] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]	Spc4; Pace4	Spc4; Pace4
Rattus norvegicus	RefSeq	GI_62652294-S	ILMN_62237	UQCRB_PREDICTED	XM_343225.3	XM_343225.3		362897	109480683	XM_343225.3	Uqcrb_predicted	XP_343226.1	ILMN_1350410	0004120079	S	379	GGCGAAGAAGTGATCGTGTAGTTAAGATCTGTGGGTGCGCCTGGTCTCAC	7	-	67959008-67959045:67959046-67959057	7q22	PREDICTED: Rattus norvegicus ubiquinol-cytochrome c reductase binding protein (predicted) (Uqcrb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645615-S	ILMN_67484	RGD1566233_PREDICTED	XM_575213.2	XM_575213.2		499872	109468673	XM_575213.2	RGD1566233_predicted	XP_575213.1	ILMN_1354736	0002120576	S	476	AGGGCAGTTTGAATTGTACACCGTCCTTGCCGTTAACGGTGTCATGCAGC	3	-	105984486-105984534:105984535-105984535	3q35	PREDICTED: Rattus norvegicus similar to STELLA (predicted) (RGD1566233_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654432-S	ILMN_56769	RGD1561176_PREDICTED	XM_343494.3	XM_343494.3		363155	109484028	XM_343494.3	RGD1561176_predicted	XP_343495.3	ILMN_1372538	0006200315	S	1747	TACCAGTCCCACCGAGACACCATCGCCCTTCTGTGTAAGCCAGAGCCGGA	8	-	118314967-118315016	8q32	PREDICTED: Rattus norvegicus similar to Programmed cell death 6 interacting protein (ALG-2 interacting protein X) (predicted) (RGD1561176_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577364-S	ILMN_272666	OLR434	NM_001000397.1	NM_001000397.1		296694	47577364	NM_001000397.1	Olr434	NP_001000397.1	ILMN_1365204	0006180670	S	648	GGCTATTGCTGTGTCTTATGGATTCATCGCTGGTGCTGTGATCCGCATGC	3	+	16846692-16846741	3q11	Rattus norvegicus olfactory receptor 434 (Olr434), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr434	Olr434
Rattus norvegicus	RefSeq	GI_62651063-S	ILMN_287947	RGD1563216_PREDICTED	XM_001059413.1	XM_001059413.1		500694	109479667	XM_001059413.1	RGD1563216_predicted	XP_001059413.1	ILMN_1368110	0003440441	S	681	CCTCCCCCAGCACAATGTTAAGGCCAAATCCAAATGCCGTTACCTCAACC				6q31	PREDICTED: Rattus norvegicus similar to HESB like domain containing 1 (predicted) (RGD1563216_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090599-S	ILMN_286705	DNAI2	NM_001007726.1	NM_001007726.1		360654	56090599	NM_001007726.1	Dnai2	NP_001007727.1	ILMN_1358505	0000060497	S	2782	TGGTCGCACGGTAGGGGCGTTCCCAGGTGTGGAGAGTAGGGTGAACCTGA	10	+	104641066-104641115	10q32.2	Rattus norvegicus dynein, axonemal, intermediate chain 2 (Dnai2), mRNA.	A dynein complex found in eukaryotic cilia and flagella; the motor domain heads interact with adjacent microtubules to generate a sliding force which in converted to a bending motion. May contain two or three dynein heavy chains as well as several light chains [goid 5858] [evidence ISS]; The bundle of microtubules and associated proteins that forms the core of cilia in eukaryotic cells and is responsible for their movements [goid 35085] [evidence ISS]	The assembly of a cilium, a specialized eukaryotic locomotor organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 42384] [evidence ISS]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence ISS]	MGC93894	MGC93894
Rattus norvegicus	RefSeq	GI_62639916-S	ILMN_69669	LOC502341	XM_577807.1	XM_577807.1		502341	62639916	XM_577807.1	LOC502341	XP_577807.1	ILMN_1348874	0002450451	S	456	GGCCTTGCCAAGAGACAGTGTAAGAAAGCAGGTCCTGATTCACCTAGAGG					PREDICTED: Rattus norvegicus similar to Jumonji/ARID domain-containing protein 1C (SmcX protein) (Xe169 protein) (LOC502341), mRNA.					
Rattus norvegicus	RefSeq	GI_56605721-S	ILMN_285353	SHMT2	NM_001008322.1	NM_001008322.1		299857	56605721	NM_001008322.1	Shmt2	NP_001008323.1	ILMN_1368671	0006110113	S	1958	TAGGGAAGGGGAGTTGCAAGCTGAGCCAGAGGAAGGGGTGGGTAAAGCGC	7	-	67494507-67494556	7q22	Rattus norvegicus serine hydroxymethyltransferase 2 (mitochondrial) (Shmt2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]	The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence IEA]; The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence IDA]; The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence IDA]; The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence TAS]; The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid [goid 6545] [evidence IDA]; The chemical reactions and pathways involving L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6563] [evidence IEA]; The chemical reactions and pathways involving L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6563] [evidence TAS]; The chemical reactions and pathways resulting in the formation of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6564] [evidence IDA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine [goid 19264] [evidence IDA]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence IDA]	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IEA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence TAS]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: L-allo-threonine = glycine + acetaldehyde [goid 8732] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]	MGC105820	MGC105820
Rattus norvegicus	RefSeq	GI_62648920-S	ILMN_277823	FBXO10_PREDICTED	XM_001071167.1	XM_001071167.1		362511	109476420	XM_001071167.1	Fbxo10_predicted	XP_001071167.1	ILMN_1367791	0000770673	S	4374	AAGTGATGAGAGGTCCAGCTCCCAAAGGGCTTCACCAGACGGCACTGACG				5q22	PREDICTED: Rattus norvegicus F-box only protein 10 (predicted) (Fbxo10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651563-S	ILMN_70121	LOC503102	XM_578622.1	XM_578622.1		503102	62651563	XM_578622.1	LOC503102	XP_578622.1	ILMN_1349464	0004780576	S	196	CCAGAGAAAGGCACAATGTAGACGGTGTCTTCTCCCAGGTCCAGTTGCAG				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin H-chain V-region (LOC503102), mRNA.					
Rattus norvegicus	RefSeq	GI_62667100-S	ILMN_66552	LOC501596	XM_576996.1	XM_576996.1		501596	62667100	XM_576996.1	LOC501596	XP_576996.1	ILMN_1359007	0006660035	S	1102	CAGCGAGACGTCAGACGACGATGCCTGGAAGTAGAAGTAGAAATGCTCGC					PREDICTED: Rattus norvegicus similar to 5330440M15Rik protein (LOC501596), mRNA.					
Rattus norvegicus	RefSeq	GI_24415395-S	ILMN_297928	GPR3	NM_153727.1	NM_153727.1		266769	24415395	NM_153727.1	Gpr3	NP_714949.1	ILMN_1365954	0005890632	S	840	CAACTCCATGATCAACCCGGTCATTTACGCCTTCCGCAACCAAGACGTGC	5	+	151916562-151916611	5q36	Rattus norvegicus G protein-coupled receptor 3 (Gpr3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that modulates the frequency, rate or extent of meiosis, the process by which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes [goid 40020] [evidence ISS]	Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Gpcr3	Gpcr3
Rattus norvegicus	RefSeq	GI_62666088-S	ILMN_57712	LOC502428	XM_577910.1	XM_577910.1		502428	62666088	XM_577910.1	LOC502428	XP_577910.1	ILMN_1372013	0007050253	S	957	GAGACGCTCTCCCCAGGCCCTGTACATCTGGAAGGTGGAGGGAAGCAAAT					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502428), mRNA.					
Rattus norvegicus	RefSeq	GI_62647899-S	ILMN_300284	LRRN1	NM_001037363.1	NM_001037363.1		500280	82654225	NM_001037363.1	Lrrn1	NP_001032440.1	ILMN_1368480	0004230133	S	2604	GCCATCAATACGAAGAACCGAAGAGCCGAACCATGTCCTCTCAACAGCTA	4	+	143008473-143008522	4q41	Rattus norvegicus leucine rich repeat neuronal 1 (Lrrn1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124972	MGC124972
Rattus norvegicus	RefSeq	GI_62653141-S	ILMN_268792	HOXC4_MAPPED	XM_001068679.1	XM_001068679.1		24459	109483024	XM_001068679.1	Hoxc4_mapped	XP_001068679.1	ILMN_1361256	0004010161	S	2405	CCTTAGGCCTTTTGCATTGAAAATGCACCAGGGGAGGTTAGTGAGGGGGG				7q36	PREDICTED: Rattus norvegicus homeo box C4 (mapped) (Hoxc4_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_56606079-S	ILMN_302387	BRD8	NM_001008509.1	NM_001008509.1		291691	56606079	NM_001008509.1	Brd8	NP_001008509.1	ILMN_1366421	0003140066	S	3037	AAGGCTGAGGAGCAGTGAGTCCAGAAGCGGAGTTACAGAAGAGGAGGCTC	18	-	27074446-27074495	18p12	Rattus norvegicus bromodomain containing 8 (Brd8), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	p120	p120
Rattus norvegicus	RefSeq	GI_20301975-S	ILMN_59168	TGOLN1	NM_138840.2	NM_138840.2		192152	71534285	NM_138840.2	Tgoln1	NP_620195.1	ILMN_1357907	0003610204	S	2644	CGTTGGGGGAGGGTGCCCAGGTCTCTCTTGCTTTGACTGTCGCATCCATT	4	-	106112172-106112221	4q33	Rattus norvegicus trans-golgi network protein (Tgoln1), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes [goid 6895] [evidence TAS]		Tgn38; MGC108592; Ttgn1	Tgn38; MGC108592; Ttgn1
Rattus norvegicus	RefSeq	GI_62656635-S	ILMN_60629	RHOT1_PREDICTED	XM_220753.3	XM_220753.3		303351	62656635	XM_220753.3	Rhot1_predicted	XP_220753.3	ILMN_1353460	0002480687	S	2861	TAAAGAAGCCACCCTGACCACCGCTGACTCACCCAGAGTGAAAACCGTCC					PREDICTED: Rattus norvegicus ras homolog gene family, member T1 (predicted) (Rhot1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741773-S	ILMN_264467	SEC13	NM_001006978.1	NM_001006978.1		297522	55741773	NM_001006978.1	Sec13	NP_001006979.1	ILMN_1351124	0002320114	S	966	GCCTCCATCACAGAGGGCCAACAGAATGAGCAATGACAACACAGGCAGCC	4	-	149637316-149637330:149637331-149637365	4q42	Rattus norvegicus SEC13 homolog (S. cerevisiae) (Sec13), mRNA.		The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IDA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]		MGC105923	MGC105923
Rattus norvegicus	RefSeq	GI_13540676-S	ILMN_271657	LYN	NM_030857.1	NM_030857.1		81515	13540676	NM_030857.1	Lyn	NP_110484.1	ILMN_1372831	0002370538	S	3053	TGGAGGGCTGAGGAGTTGATGCCTGGATGCCCAAGGAACAGGCTTTGCAG	5	+	17054182-17054231	5q12	Rattus norvegicus Yamaguchi sarcoma viral (v-yes-1) oncogene homolog (Lyn), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 42531] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The regulated release of cytokines from a cell or group of cells. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 50663] [evidence IMP]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; Any process that modulates the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51279] [evidence IMP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 42531] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence TAS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653592-S	ILMN_264564	RGD1307682	NM_001024760.1	NM_001024760.1		300675	67514521	NM_001024760.1	RGD1307682	NP_001019931.1	ILMN_1363474	0005550114	S	1240	GAGTTTCCTCTGAGCCTCCTCTTGGGGCTGTGCTTCAAAGTCAGGTGAAC	8	+	47746151-47746163:47746164-47746200	8q22	Rattus norvegicus similar to hypothetical protein FLJ21827 (RGD1307682), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_13928999-S	ILMN_279935	LILRB3	NM_031713.1	NM_031713.1		65146	13928999	NM_031713.1	Lilrb3	NP_113901.1	ILMN_1373925	0000580280	S	2152	GCCTAGCACTTTGGAGGAGTGGAAAGGATGGTCAAGTGGTCAAGGTCATC	1	+	63659352-63659401	1q12	Rattus norvegicus leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 (Lilrb3), mRNA.		The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1782] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells [goid 19724] [evidence ISS]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62639578	ILMN_58460	LOC499138	XM_574432.1	XM_574432.1		499138	62639578	XM_574432.1	LOC499138	XP_574432.1	ILMN_1650273	0004850609	S	3477	CCTGATTGATAACTACACTGGTCCTCAAGTACATTCTAAACTCAAAGGTC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499138), mRNA.					
Rattus norvegicus	RefSeq	GI_62658416	ILMN_266970	ZFP99	XM_001070965.1	XM_001070965.1		252860	109496581	XM_001070965.1	Zfp99	XP_001070965.1	ILMN_1650695	0004760725	S	670	TCCGACACCAAAGAATCCATCACAATTCAGTCTCTGGGCTTAGGGCGGAG				12p11	PREDICTED: Rattus norvegicus zinc finger protein 99 (Zfp99), mRNA.					
Rattus norvegicus	RefSeq	GI_62662289-S	ILMN_60645	LOC502042	XM_577474.1	XM_577474.1		502042	62662289	XM_577474.1	LOC502042	XP_577474.1	ILMN_1350415	0006650148	S	478	CAAGTGGCGTCGTGGATACTCTTCCCCCGGTGTCTGAATCGCGTTATGGG				16p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330003B14 (LOC502042), mRNA.					
Rattus norvegicus	RefSeq	GI_62665318-S	ILMN_65804	WWOX_PREDICTED	XM_214696.2	XM_214696.2		292041	62665318	XM_214696.2	Wwox_predicted	XP_214696.2	ILMN_1367862	0000130035	S	752	AGCAGCGTGCCCGAGGCCATGTTCCCGATTCCTGGGCAGAAGCAGAATTT				19q12	PREDICTED: Rattus norvegicus WW domain-containing oxidoreductase (predicted) (Wwox_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777687-S	ILMN_303023	OLR936	NM_001001367.1	NM_001001367.1		288869	47777687	NM_001001367.1	Olr936	NP_001001367.1	ILMN_1364801	0002480400	S	782	CTGCAAAGGCTGGAGTTGCTTTGACAAAGGGGGTGGCTATGCTCAATACC	7	-	4457372-4457421	7q11	Rattus norvegicus olfactory receptor 936 (Olr936), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr936	Olr936
Rattus norvegicus	RefSeq	GI_62654756-S	ILMN_50808	RGD1564912_PREDICTED	XM_236965.4	XM_236965.4		301276	109485846	XM_236965.4	RGD1564912_predicted	XP_236965.3	ILMN_1359193	0004570746	S	189	CGATCTGCGCGGTCGACCCCCAACACTGTTCGTTCTCATTTTCGTTTGGG	9	+	15768953-15768979:15771038-15771060	9q12	PREDICTED: Rattus norvegicus similar to Mut protein (predicted) (RGD1564912_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658588-S	ILMN_58503	LOC498164	XM_573379.1	XM_573379.1		498164	62658588	XM_573379.1	LOC498164	XP_573379.1	ILMN_1369481	0004010609	S	1736	ATGACACTGTGGGTCCATATTTCATACTTCTCTCTGTGAGTCACGTGGAG				12q11	PREDICTED: Rattus norvegicus similar to family with sequence similarity 55, member C (LOC498164), mRNA.					
Rattus norvegicus	RefSeq	GI_62651308-S	ILMN_57219	IGE FE-3	XM_216802.3	XM_216802.3		299351	62651308	XM_216802.3	IgE FE-3	XP_216802.3	ILMN_1359527	0002640273	S	1367	CCTGGAGGTCACCAAGGCACTCTGGACACAGACAAAACAGTTCACCTGCC					PREDICTED: Rattus norvegicus DNP-specific IgE (IgE FE-3), mRNA.					
Rattus norvegicus	RefSeq	GI_62664682-S	ILMN_54576	RGD1564708_PREDICTED	XM_225707.4	XM_225707.4		307253	109506801	XM_225707.4	RGD1564708_predicted	XP_225707.4	ILMN_1350691	0003520706	S	1224	CCGGATGAAGACGGAGTTGCTAGTGCAGATGGATGGCTTAGCACGCTCGG	18	-	73972087-73972136	18q12.3	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110023G01 (predicted) (RGD1564708_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592054-S	ILMN_281676	RPL13	NM_031101.1	NM_031101.1		81765	13592054	NM_031101.1	Rpl13	NP_112363.1	ILMN_1354937	0004280315	S	330	CGTGGACCCAAGGAGGCGAAACAAATCCACGGAGTCACTGCAGGCCAACG	19	+	53438455-53438504	19q12	Rattus norvegicus ribosomal protein L13 (Rpl13), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence NAS]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence NAS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence NAS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_47575879-S	ILMN_284140	ISCA1	NM_181626.3	NM_181626.3		290985	47575879	NM_181626.3	Isca1	NP_853657.1	ILMN_1371925	0004810079	S	1508	ACAGGCCAGCCTTGAACCCACAACAATCCTCCTGCTTCCACGTTCAGAGG	17	+	10821335-10821384	17p14	Rattus norvegicus iron-sulfur cluster assembly 1 homolog (S. cerevisiae) (Isca1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster [goid 16226] [evidence IEA]; Any of the hormonal, neural, and secretory processes that release products into the blood or lymph. These products have specific effects on other organs [goid 50886] [evidence NAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an iron-sulfur cluster, a combination of iron and sulfur atoms [goid 51536] [evidence IEA]	hIscA	hIscA
Rattus norvegicus	RefSeq	GI_6981017-S	ILMN_296963	HCRTR1	NM_013064.1	NM_013064.1		25593	6981017	NM_013064.1	Hcrtr1	NP_037196.1	ILMN_1367383	0001690047	S	2399	CCGTTCGGCATGGAGGCCAACAGCCCGTGGCAACTGTAATTAAAAGCCTG	5	-	149160741-149160790	5q36	Rattus norvegicus hypocretin (orexin) receptor 1 (Hcrtr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence TAS]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence IEA]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]	Hctr1	Hctr1
Rattus norvegicus	RefSeq	GI_47577930-S	ILMN_286671	OLR1135	NM_001000878.1	NM_001000878.1		405177	47577930	NM_001000878.1	Olr1135	NP_001000878.1	ILMN_1367727	0004610164	S	364	CGCTATGTAGCCATTTGCAAACCCCTGAGGTACACAGTCATCATGAACCC	8	-	17207756-17207805	8q13	Rattus norvegicus olfactory receptor 1135 (Olr1135), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1135	Olr1135
Rattus norvegicus	RefSeq	GI_16758415-S	ILMN_263448	BBS2	NM_053618.1	NM_053618.1		113948	16758415	NM_053618.1	Bbs2	NP_446070.1	ILMN_1372482	0003870102	S	2216	CATCAACACACTCTTCAGAATCATGCGGGTGGGGACTGCTCCTTCCTAGG	19	+	11382473-11382521:11382522-11382522	19p12	Rattus norvegicus Bardet-Biedl syndrome 2 homolog (human) (Bbs2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum that is similar in structure to a centriole. The basal body serves as a nucleation site for axoneme growth [goid 5932] [evidence ISS]; A short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum that is similar in structure to a centriole. The basal body serves as a nucleation site for axoneme growth [goid 5932] [evidence IEA]; A cilium that consists of a 9 + 2 arrangement of microtubules, radial spokes, and a dynein apparatus. Motile cilia, found on cells that line the lumenal ducts of various tissues, beat with a characteristic whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface [goid 31514] [evidence ISS]; A cilium that consists of a 9 + 2 arrangement of microtubules, radial spokes, and a dynein apparatus. Motile cilia, found on cells that line the lumenal ducts of various tissues, beat with a characteristic whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface [goid 31514] [evidence IEA]; A protein complex that associates with the primary cilium and is involved in cilium biogenesis; consists of seven conserved proteins: BBS1, BBS2, BBS4, BBS5, BBS7, BBS8 and BBS9 [goid 34464] [evidence ISS]	The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement [goid 7288] [evidence ISS]; The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement [goid 7288] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The progression of the striatum over time from its initial formation until its mature state. The striatum is a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking [goid 21756] [evidence ISS]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence IEA]; A process by which a protein is transported to, or maintained in, a location within an organelle [goid 33365] [evidence ISS]; The assembly of a sensory cilium, a primary cilium found on sensory neurons that contains an a 9+0 axonemal arrangement of microtubules [goid 35058] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence IEA]; The process by which the anatomical structures of brain are generated and organized. Morphogenesis pertains to the creation of form. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 48854] [evidence ISS]; A process that is carried out at the cellular level and by which the structure of a cilium is organized. Morphogenesis pertains to the creation of form [goid 60271] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663961-S	ILMN_63326	LOC502147	XM_577601.1	XM_577601.1		502147	62663961	XM_577601.1	LOC502147	XP_577601.1	ILMN_1371191	0005130372	S	2715	GCAGGTTTCTTCTGCATGGACCTAAGTTTGGCTGCAGTTTTCCCACGGGC				17q12.3	PREDICTED: Rattus norvegicus similar to apical early endosomal glycoprotein (LOC502147), mRNA.					
Rattus norvegicus	RefSeq	GI_62643092-S	ILMN_266574	RGD1561906_PREDICTED	XR_007994.1	XR_007994.1		499552	109466220	XR_007994.1	RGD1561906_predicted		ILMN_1357911	0003710204	S	347	CAAGAAGTCAGTACCAGACAAAAACGGAACCATTCCTGGTTGGGTACCAG				2q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930430F08 (predicted) (RGD1561906_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650618-S	ILMN_68719	PRPS1L1_PREDICTED	XM_234073.3	XM_234073.3		298954	109478136	XM_234073.3	Prps1l1_predicted	XP_234073.1	ILMN_1370305	0007040242	S	736	CCGCATGGTGCTTGTGGGTGACGTAAAGGAGCGAGTGGCTATCCTTGTAG	6	+	53652785-53652834	6q16	PREDICTED: Rattus norvegicus phosphoribosyl pyrophosphate synthetase 1-like 1 (predicted) (Prps1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645606-S	ILMN_295565	ZFYVE19	NM_001034948.1	NM_001034948.1		499871	77917593	NM_001034948.1	Zfyve19	NP_001030120.1	ILMN_1357195	0001450072	S	846	GCCAGAAGATTGGCTGTACTAAAGGGACAGGACCCCAGCAGAGTAACCCT	3	+	105728228-105728270:105728655-105728661	3q35	Rattus norvegicus zinc finger, FYVE domain containing 19 (Zfyve19), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124714	MGC124714
Rattus norvegicus	RefSeq	GI_11968067-S	ILMN_292780	CRIP2	NM_022501.1	NM_022501.1		338401	11968067	NM_022501.1	Crip2	NP_071946.1	ILMN_1364809	0004210600	S	968	CTCGCCCGCCAGTATTATTTATGCTCTGCTTGCCGGTGATGGGCATGAGC	6	+	138152221-138152270	6q32	Rattus norvegicus cysteine-rich protein 2 (Crip2), mRNA.		Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	CRP2	CRP2
Rattus norvegicus	RefSeq	GI_33414520-S	ILMN_294986	RHEBL1	NM_182825.1	NM_182825.1		359959	33414520	NM_182825.1	Rhebl1	NP_877977.1	ILMN_1356637	0005360273	S	1024	CCGAGGATCTGCCCTCCTGGGTATATTTTGGGTGTTGGTTGGGTAAGGGT	7	-	137645678-137645727	7q36	Rattus norvegicus Ras homolog enriched in brain like 1 (Rhebl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654600-S	ILMN_299579	RGD1559960_PREDICTED	XM_576496.1	XM_576496.1		501084	62654600	XM_576496.1	RGD1559960_predicted	XP_576496.1	ILMN_1367559	0005420168	S	1877	GACGTCAGCATTGCTAAGCTGAGATCAGCAGGAGCAGCCTGTGGCATGAG	9	+	592075-592124	9q11	PREDICTED: Rattus norvegicus similar to Sulfotransferase K1 (rSULT1C2) (predicted) (RGD1559960_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654178-S	ILMN_67074	RGD1566151_PREDICTED	XM_576456.2	XM_576456.2		501043	109483866	XM_576456.2	RGD1566151_predicted	XP_576456.2	ILMN_1374718	0004120161	S	1598	TGCAGGACGGTGAGCTCCGATCTTGGACGGTGGGGTATACGTGAGCACTA	8	-	105306549-105306598	8q31	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC34923 (predicted) (RGD1566151_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647283-S	ILMN_59531	LOC502769	XM_578267.1	XM_578267.1		502769	62647283	XM_578267.1	LOC502769	XP_578267.1	ILMN_1373592	0004200100	S	31	CACCAGACTCTCATTCATGCTTTGTTGCCAACCGATGCCAGGCAGGCTGC				4q24	PREDICTED: Rattus norvegicus similar to Translocase of outer mitochondrial membrane 20 homolog (LOC502769), mRNA.					
Rattus norvegicus	RefSeq	GI_62644778-S	ILMN_48538	INPP5E	XM_342391.2	XM_342391.2		114089	62644778	XM_342391.2	Inpp5e	XP_342392.2	ILMN_1355805	0004200193	S	8379	TCAGACCACCGTCCTGTGTATGGCTTGTTCCGGGTGAAAGTGAGGCCAGG				3p13	PREDICTED: Rattus norvegicus inositol polyphosphate-5-phosphatase E (Inpp5e), mRNA.					
Rattus norvegicus	RefSeq	GI_62659028-S	ILMN_61633	RGD1310292_PREDICTED	XM_222240.4	XM_222240.4		304537	109496001	XM_222240.4	RGD1310292_predicted	XP_222240.4	ILMN_1370281	0000460047	S	1810	GGGCAGGAACCCAGCACAGACGGCAAACGGCTCTTCTCCTTCTTCAGGAA	12	+	42226311-42226360	12q16	PREDICTED: Rattus norvegicus similar to 2210403N09Rik protein (predicted) (RGD1310292_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647325-S	ILMN_61694	LOC500138	XM_575490.1	XM_575490.1		500138	62647325	XM_575490.1	LOC500138	XP_575490.1	ILMN_1364302	0004760041	S	2482	CAGGAAGCACCAGATACGACCAGAAAGCCATAAGGATGACCCAGCCAGAG					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC500138), mRNA.					
Rattus norvegicus	RefSeq	GI_62339321-S	ILMN_275283	PCDHB6_PREDICTED	XM_001055233.1	XM_001055233.1		291653	109506469	XM_001055233.1	Pcdhb6_predicted	XP_001055233.1	ILMN_1357081	0005670193	S	2097	GCTGTTCCTCCTGTCTGTGTTATTGTTCGTGGGAGTAAGGTTGTGCAGGA	18	+	30152783-30152832	18p11	PREDICTED: Rattus norvegicus protocadherin beta 6 (predicted) (Pcdhb6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647422-S	ILMN_66119	LOC500179	XM_575531.1	XM_575531.1		500179	62647422	XM_575531.1	LOC500179	XP_575531.1	ILMN_1363564	0002370010	S	1073	GGGACACAATGAAAGCTGTGCAAGGAGGAAAACTCATAGCGCTGAGTGCC					PREDICTED: Rattus norvegicus similar to LRRGT00108 (LOC500179), mRNA.					
Rattus norvegicus	RefSeq	GI_49227060-S	ILMN_269585	WAP	NM_053751.3	NM_053751.3		114596	49227060	NM_053751.3	Wap	NP_446203.1	ILMN_1357574	0004120750	S	205	GGCCCTGCAAAACTCCTGTCAACATTGAGGTTCAAAAGGCTGGCCGCTGC	14	-	87393411-87393440:87393751-87393770	14q21	Rattus norvegicus whey acidic protein (Wap), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62661734-S	ILMN_289542	RGD1307254	NM_001024875.1	NM_001024875.1		298712	67846019	NM_001024875.1	RGD1307254	NP_001020046.1	ILMN_1373476	0006860397	S	968	GGCTGCTGAAGATAAGAACAGGCACCAGGAGAGAACCCCTTTCGATCGTG	15	-	57010680-57010729	15q11	Rattus norvegicus similar to RIKEN cDNA 1200011I18 (RGD1307254), mRNA.				MGC114554	MGC114554
Rattus norvegicus	RefSeq	GI_62666050-S	ILMN_263223	TMEM26_PREDICTED	XM_001080333.1	XM_001080333.1		309724	109510010	XM_001080333.1	Tmem26_predicted	XP_001080333.1	ILMN_1365043	0001170520	S	971	GGGGCTTCCTTAGGGTTTTCCTGTGCCAGTACAGTGCGGATCTATGGGCC				20p11	PREDICTED: Rattus norvegicus transmembrane protein 26 (predicted) (Tmem26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649205-S	ILMN_265526	RGD1562650_PREDICTED	XM_001054943.1	XM_001054943.1		502965	109476729	XM_001054943.1	RGD1562650_predicted	XP_001054943.1	ILMN_2039393	0006280411	S	269	CACGTGCTGCTTGGAATGAAACCCTCCTATTGTCATTCTGCAAATACCTC				5q32	PREDICTED: Rattus norvegicus similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) (predicted) (RGD1562650_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27715048-S	ILMN_265526	RGD1562650_PREDICTED	XM_001054943.1	XM_001054943.1		502965	109476729	XM_001054943.1	RGD1562650_predicted	XP_001054943.1	ILMN_1356073	0004070142	S	56	CCTGCTGTCTAGGATGTGACCTGCCTCGCACTCATAACCTCACAGTCTTG				5q32	PREDICTED: Rattus norvegicus similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) (predicted) (RGD1562650_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659777-S	ILMN_288806	FMN2_PREDICTED	XM_001058601.1	XM_001058601.1		289262	109499100	XM_001058601.1	Fmn2_predicted	XP_001058601.1	ILMN_1355713	0001340551	S	4583	GGAGGTGTCCCCAAATGTTTTCTTCAGTGTTTGGCACGAGTTCAGCTCTG					PREDICTED: Rattus norvegicus formin 2 (predicted) (Fmn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21245113-S	ILMN_302334	CTSQ	NM_139262.1	NM_139262.1		246147	21245113	NM_139262.1	Ctsq	NP_640355.1	ILMN_1349132	0004540706	S	1200	TGCTGTCCCAAGAAAGCACGTGGCACGGGACTCCATTTCCAGAGGAGGGA	17	+	9352603-9352652	17p14	Rattus norvegicus cathepsin Q (Ctsq), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence NAS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]	MGC125032; CatQ	MGC125032; CatQ
Rattus norvegicus	RefSeq	GI_62661209-S	ILMN_66805	LOC289926	XM_223830.3	XM_223830.3		289926	62661209	XM_223830.3	LOC289926	XP_223830.3	ILMN_1367943	0005130551	S	2197	GTCGAACAGGTGCAAGAAAGTGGAAGACACTGGAGCACCAGGAAGCGTCC				15p16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23834 (LOC289926), mRNA.					
Rattus norvegicus	RefSeq	GI_62661746-S	ILMN_59226	LOC498547	XM_573821.1	XM_573821.1		498547	62661746	XM_573821.1	LOC498547	XP_573821.1	ILMN_1373129	0004480056	S	2131	CCCCTCGCCGTGAGTCTGCGATGTATTCAAGCTGCATTCTGGGCTTCTGC				15q11	PREDICTED: Rattus norvegicus similar to epithelial stromal interaction 1 isoform a (LOC498547), mRNA.					
Rattus norvegicus	RefSeq	GI_62651541-S	ILMN_68988	LOC503091	XM_578611.1	XM_578611.1		503091	62651541	XM_578611.1	LOC503091	XP_578611.1	ILMN_1373750	0000130465	S	157	TGAGTTGGTTGAAGCAGATGCCTGGACAGAATATTGAGTGGATCGGAAAC				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC503091), mRNA.					
Rattus norvegicus	RefSeq	GI_62640826-S	ILMN_263909	STARD5_PREDICTED	XM_001068203.1	XM_001068203.1		293065	109462254	XM_001068203.1	Stard5_predicted	XP_001068203.1	ILMN_1350120	0004730286	S	3129	GCCACGACCCAGAAATGTCCAATACCCACAGCATCCCCTGAAGGCCAAAG				1q31	PREDICTED: Rattus norvegicus StAR-related lipid transfer (START) domain containing 5 (predicted) (Stard5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652880-S	ILMN_68642	RGD1306001_PREDICTED	XM_343305.3	XM_343305.3		362975	109481126	XM_343305.3	RGD1306001_predicted	XP_343306.1	ILMN_1368999	0001410592	S	533	GCTGGGAGCTGTGTATCTGGTCTTCTCTGAACTGTGTGGGGTACGTGCAG	7	-	123813069-123813118	7q34	PREDICTED: Rattus norvegicus similar to 2210021J22Rik protein (predicted) (RGD1306001_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649063-S	ILMN_55093	LOC298104	XM_233020.3	XM_233020.3		298104	62649063	XM_233020.3	LOC298104	XP_233020.3	ILMN_1365947	0003390601	S	1227	GGATGGAGGATACTGTCTGTTGCCTGTCAAGGCCTAGGGACCTGCAGCTG				5q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330416G13 gene (predicted) (LOC298104), mRNA.					
Rattus norvegicus	RefSeq	GI_62665153-S	ILMN_293504	LOC291964	XM_001072430.1	XM_001072430.1		291964	109508671	XM_001072430.1	LOC291964	XP_001072430.1	ILMN_1354508	0002810019	S	3251	TTTGCTTACCAGCAGGCCAGAAGACGCCACACACAGCCGACGTAGCAGAG				19q11	PREDICTED: Rattus norvegicus similar to FH1/FH2 domain-containing protein (Formin homolog overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1) (LOC291964), mRNA.					
Rattus norvegicus	RefSeq	GI_6981665-S	ILMN_262864	TNNT2	NM_012676.1	NM_012676.1		24837	6981665	NM_012676.1	Tnnt2	NP_036808.1	ILMN_1361952	0000670739	S	840	CGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGCCAAAGTCACCGGGC	13	+	48885269-48885283:48885574-48885608	13q13	Rattus norvegicus troponin T type 2 (cardiac) (Tnnt2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IDA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IMP]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IDA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated [goid 30049] [evidence ISS]; Any process that stops or reduces the rate of ATP hydrolysis by an ATPase [goid 32780] [evidence ISS]; Any process that activates or increases the rate of ATP hydrolysis by an ATPase [goid 32781] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence ISS]; The process by which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes [goid 51764] [evidence IDA]; The process by which the anatomical structure of cardiac atrium muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55009] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]; Any process that modulates the velocity of muscle filament sliding [goid 32972] [pmid 10747195] [evidence IMP]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence ISS]; Interacting selectively with troponin C, the calcium-binding subunit of the troponin complex [goid 30172] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IDA]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence IPI]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence ISS]	RATCTTG; CTTG; Ctt; Tnnt3	RATCTTG; CTTG; Ctt; Tnnt3
Rattus norvegicus	RefSeq	GI_56090260-S	ILMN_296584	SCLY	NM_001007755.1	NM_001007755.1		363285	56090260	NM_001007755.1	Scly	NP_001007756.1	ILMN_1357468	0004850161	S	1811	CTGATGGTCCCCAGACGAGGTCTCATGCCTTGTTCCCAGAGGTCACAGCT	9	+	90545835-90545884	9q36	Rattus norvegicus selenocysteine lyase (Scly), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: L-selenocysteine + reduced acceptor = hydrogen selenide + L-alanine + acceptor [goid 9000] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	MGC94824	MGC94824
Rattus norvegicus	RefSeq	GI_62656604-S	ILMN_58411	RGD1562012_PREDICTED	XM_579762.2	XM_579762.2		497962	109488603	XM_579762.2	RGD1562012_predicted	XP_579762.2	ILMN_1356357	0006450019	S	600	TTACCGACCTCTGAGCCCCAGAAGGGATGTCCCCTCAGATGACCACCTGT	10	+	64959869-64959918	10q25	PREDICTED: Rattus norvegicus RGD1562012 (predicted) (RGD1562012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454215-S	ILMN_270881	HLA-DMB	NM_198740.1	NM_198740.1		294273	38454215	NM_198740.1	Hla-dmb	NP_942035.1	ILMN_1373278	0002510273	S	1048	GGGGGGTATTCGTAATCAAATCTGCCTCGGGTGTTTTCTGAGGTGAGCCG	20	-	4829633-4829682	20p12	Rattus norvegicus major histocompatibility complex, class II, DM beta (Hla-dmb), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	The process by which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex [goid 2504] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RT1-DMb; RT1.DMb	RT1-DMb; RT1.DMb
Rattus norvegicus	RefSeq	GI_9507240-S	ILMN_291791	VTN	NM_019156.1	NM_019156.1		29169	9507240	NM_019156.1	Vtn	NP_062029.1	ILMN_1374141	0003990142	S	1415	ACCTTAGAACACGGCGAGTGGACTCTGTGAATCCTCCCTACCCACGCTCC	10	+	64612150-64612199	10q25	Rattus norvegicus vitronectin (Vtn), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]	The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124961; Aa1018; Vn	MGC124961; Aa1018; Vn
Rattus norvegicus	RefSeq	GI_62652963-S	ILMN_49938	LOC503166	XM_578690.1	XM_578690.1		503166	62652963	XM_578690.1	LOC503166	XP_578690.1	ILMN_1350105	0003440017	S	2888	ACCACTTACCCACTCTTGTGCTATTTGCATCTCCAGCAGCCCGGGAAGGC					PREDICTED: Rattus norvegicus similar to Gamma-parvin (LOC503166), mRNA.					
Rattus norvegicus	RefSeq	GI_62658648-S	ILMN_275094	RGD1566324_PREDICTED	XM_001074780.1	XM_001074780.1		501809	109496688	XM_001074780.1	RGD1566324_predicted	XP_001074780.1	ILMN_1351650	0001230427	S	635	CAGCCCTGGTTCCTGACGAAGAGGCCACAAACACATCAGCATTAGGAGAG				12q11	PREDICTED: Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (predicted) (RGD1566324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654572-S	ILMN_64194	LOC367197	XM_346004.2	XM_346004.2		367197	62654572	XM_346004.2	LOC367197	XP_346005.2	ILMN_1359323	0003850484	S	266	GGGAGAATGTCACAGAGCAGTGGCCCTCAGACTTCCTGGTCCTGCTGTCT					PREDICTED: Rattus norvegicus similar to suppression of tumorigenicity 14 (LOC367197), mRNA.					
Rattus norvegicus	RefSeq	GI_62659065-S	ILMN_268985	RGD1311005_PREDICTED	XM_001080654.1	XM_001080654.1		360826	109497549	XM_001080654.1	RGD1311005_predicted	XP_001080654.1	ILMN_1372311	0003440100	S	510	ACTCGCAGACGCCAAAAGTGAGGCAGCCATGGAAGAGGTAGAAGCCACTG				12q16	PREDICTED: Rattus norvegicus similar to J-type co-chaperone HSC20 (predicted) (RGD1311005_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662430-S	ILMN_272250	KLHL26_PREDICTED	XM_001068195.1	XM_001068195.1		290657	109503959	XM_001068195.1	Klhl26_predicted	XP_001068195.1	ILMN_1358756	0004540204	S	1769	ACTGAGACGGATGAGTGGGAGAGAGACCTGCACTTCCCCGAGTCCTTTGC				16p14	PREDICTED: Rattus norvegicus kelch-like 26 (Drosophila) (predicted) (Klhl26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667560-S	ILMN_273589	TAZ	NM_001025748.1	NM_001025748.1		363521	71043827	NM_001025748.1	Taz	NP_001020919.1	ILMN_1373054	0006220048	S	909	GGCTCCGGGCAGAAAACAAGTCAGCTGTGGAGATGCGGAAAGCCCTCACA	X	-	160320216-160320240:160320357-160320381	Xq37	Rattus norvegicus tafazzin (Taz), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cardiolipin, 1,3-bis(3-phosphatidyl)glycerol [goid 32049] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form mitochondrial respiratory chain complex I [goid 32981] [evidence ISS]; The assembly of cristae, the inwards folds of the inner mitochondrial membrane [goid 42407] [evidence ISS]; The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP, as it occurs in the mitochondrial inner membrane or chloroplast thylakoid membrane; as in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759) [goid 42775] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine + acyl-CoA = phosphatidylcholine + CoA [goid 47184] [evidence ISS]	MGC116399; Taz	MGC116399; Taz
Rattus norvegicus	RefSeq	GI_16758209-S	ILMN_289275	NUCB1	NM_053463.1	NM_053463.1		84595	16758209	NM_053463.1	Nucb1	NP_445915.1	ILMN_1365844	0000780500	S	2152	CACATACTTCCACTGCCAGGAGGCTTGCCGGGGGCTTTCTGTGTGCTCTT	1	-	95961263-95961312	1q22	Rattus norvegicus nucleobindin 1 (Nucb1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Nucb	Nucb
Rattus norvegicus	RefSeq	GI_62666396-S	ILMN_274512	LOC683585	XM_001066643.1	XM_001066643.1		683585	109512571	XM_001066643.1	LOC683585	XP_001066643.1	ILMN_1368476	0006620161	S	4795	GATGCAGGCGGGATGCCTCTGTGGCTTGTGGTGCCTGGTGGACAAGTCTA					PREDICTED: Rattus norvegicus similar to odd Oz/ten-m homolog 1 (LOC683585), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_60678261-S	ILMN_263443	WEE1	NM_001012742.1	NM_001012742.1		308937	60678261	NM_001012742.1	Wee1	NP_001012760.1	ILMN_1361482	0003850451	S	3028	CAGTGTTTGGCTAGTAGATGTTGCCCTCCAAAAGTAGGGGGAAATGTCTC	1	+	167787951-167788000	1q33	Rattus norvegicus wee 1 homolog (S. pombe) (Wee1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105683	MGC105683
Rattus norvegicus	RefSeq	GI_62662089-S	ILMN_297079	LOC364487	XM_344466.2	XM_344466.2		364487	62662089	XM_344466.2	LOC364487	XP_344467.2	ILMN_1374038	0002120397	S	3	GGTGCCTGGTTATGGCTCCATTGAGAAGCCAGTAGTATCATCAGCATTAC	15|NW_047458.1	-	9073-9122		PREDICTED: Rattus norvegicus similar to CG5937-PA (LOC364487), mRNA.					
Rattus norvegicus	RefSeq	GI_62655025-S	ILMN_269913	RGD1561071_PREDICTED	XM_001062620.1	XM_001062620.1		501138	109487082	XM_001062620.1	RGD1561071_predicted	XP_001062620.1	ILMN_1356704	0005420068	S	3831	CTCAGAGAGAGAAGAGGTTCGAGCAGCATGTTCCTGTGCCCTTGGCTACC				9q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932422E22 gene (predicted) (RGD1561071_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575994-S	ILMN_271567	OLR951	NM_001000073.1	NM_001000073.1		288879	47575994	NM_001000073.1	Olr951	NP_001000073.1	ILMN_1371605	0006550026	S	102	AACCGGCCTCTTGGGGAACTTAATCATTGTACTCCTCACTCTGTTGGACC	7	-	4859013-4859062	7q11	Rattus norvegicus olfactory receptor 951 (Olr951), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr951; ratchr7-4859164-4858220_ORF	Olr951; ratchr7-4859164-4858220_ORF
Rattus norvegicus	RefSeq	GI_62650081	ILMN_62409	KLHL21_PREDICTED	XM_233701.4	XM_233701.4		313743	109475878	XM_233701.4	Klhl21_predicted	XP_233701.3	ILMN_1650312	0001230593	S	2055	TGGATGCAGGCCACCACAGGCTGCCACAGAACCCCGAAGAGCTACAATAG	5	+	169243916-169243965	5q36	PREDICTED: Rattus norvegicus kelch-like 21 (Drosophila) (predicted) (Klhl21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644560-S	ILMN_59275	LOC362058	XM_342361.2	XM_342361.2		362058	62644560	XM_342361.2	LOC362058	XP_342362.2	ILMN_1364422	0000610170	S	958	AGGACCTCACACACTTACTCATCCGCCGCACGGAACTGCTGGTCACCTGT				2q45	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C030011O14 gene (LOC362058), mRNA.					
Rattus norvegicus	Unigene	Rn.19241	ILMN_161620	RN.19241	Rn.19241		Rn.19241		82519017	DV725694			ILMN_1530536	0004200494	S	39	TCCCTTCGAGAGAAAACTTATATTTTTGAAGAGCATATATAGACACATTA					RVL17916 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_14010836-S	ILMN_263086	NSFL1C	NM_031981.1	NM_031981.1		83809	14010836	NM_031981.1	Nsfl1c	NP_114187.1	ILMN_1370528	0003450180	S	1133	CCTTCCCTAACAAAGAGCTGGCTGATGAGAACCAAACCCTGAAGGAAGCC	3	+	141823445-141823494	3q41	Rattus norvegicus NSFL1 (p97) cofactor (p47) (Nsfl1c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	p47; XY40	p47; XY40
Rattus norvegicus	RefSeq	GI_62645695-S	ILMN_48540	LOC499880	XM_575223.1	XM_575223.1		499880	62645695	XM_575223.1	LOC499880	XP_575223.1	ILMN_1369773	0000840138	S	2286	ACTTGGGGATGGTGGCACACCCCTGTGGTCGCTTACCTTTAAGCTCAGAG					PREDICTED: Rattus norvegicus similar to concentrative Na+ nucleoside cotransporter (LOC499880), mRNA.					
Rattus norvegicus	RefSeq	GI_47576528-S	ILMN_275556	OLR162	NM_001000950.1	NM_001000950.1		405295	47576528	NM_001000950.1	Olr162	NP_001000950.1	ILMN_1351509	0001500070	S	462	GGCCGTCAGAAATTGTGTAGCTCCCATGTCAGTACCTATATTAGCTGCTC	1	+	162333423-162333472	1q33	Rattus norvegicus olfactory receptor 162 (Olr162), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr162	Olr162
Rattus norvegicus	RefSeq	GI_47577046-S	ILMN_277173	OLR775	NM_001000374.1	NM_001000374.1		296028	47577046	NM_001000374.1	Olr775	NP_001000374.1	ILMN_1353265	0000870148	S	667	ATCCTTGTTCACCAGAGTTCGAATGTTGGAGCTTTGAAGGCTTTGTCCAC	3	-	97425151-97425200	3q34	Rattus norvegicus olfactory receptor 775 (Olr775), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr775	Olr775
Rattus norvegicus	RefSeq	GI_62659331-S	ILMN_272239	RGD1308290_PREDICTED	XM_001060916.1	XM_001060916.1		360845	109498628	XM_001060916.1	RGD1308290_predicted	XP_001060916.1	ILMN_1358981	0005900176	S	2562	GAGCTCGGCCTCCACAGGAAAGCCTCCACTCTCCGTGGAAGATGACTTTG				13q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730454B08 (predicted) (RGD1308290_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758073-S	ILMN_264119	CXCR7	NM_053352.1	NM_053352.1		84348	16758073	NM_053352.1	Cxcr7	NP_445804.1	ILMN_1361010	0005220685	S	1835	ACCGTATGTAGAGTTACGTTTCGGGCTGCAAACCCGTGAACAGAGGAAAC	9	+	89354948-89354997	9q35	Rattus norvegicus chemokine (C-X-C motif) receptor 7 (Cxcr7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Rdc1	Rdc1
Rattus norvegicus	RefSeq	GI_62661255	ILMN_70056	LOC501977	XM_577405.1	XM_577405.1		501977	62661255	XM_577405.1	LOC501977	XP_577405.1	ILMN_1650902	0006400059	S	271	AGCGCTGCTCAGCTCCAGCCGAAGGAGAAGGGGGATGAGGAAGGGGATAA				15p14	PREDICTED: Rattus norvegicus similar to Histone H3.3 (LOC501977), mRNA.					
Rattus norvegicus	RefSeq	GI_62640401-S	ILMN_47717	LOC499170	XM_574466.1	XM_574466.1		499170	62640401	XM_574466.1	LOC499170	XP_574466.1	ILMN_1373009	0004540364	S	990	GGACCTGCCACTATGATGACTATGATGCCAGATGGAACCCTTGGACTGAC					PREDICTED: Rattus norvegicus similar to Non-POU-domain-containing, octamer binding protein (LOC499170), mRNA.					
Rattus norvegicus	RefSeq	GI_62079170-S	ILMN_292903	DMRTC1C	NM_001014222.1	NM_001014222.1		363483	62079170	NM_001014222.1	Dmrtc1c	NP_001014244.1	ILMN_1368104	0004200286	S	1095	GGACCTGGGAAGGGGTGCAGGCTCCTTCAAGCACCAAGTAGTTGATATTC	X	-	90790499-90790548	Xq31	Rattus norvegicus DMRT-like family C1c (Dmrtc1c), mRNA.					
Rattus norvegicus	RefSeq	GI_62651291-S	ILMN_56305	LOC314472	XM_234564.3	XM_234564.3		314472	62651291	XM_234564.3	LOC314472	XP_234564.3	ILMN_1354352	0006980273	S	2246	GCCGTCTCCTATTTCCAAGCAAGGTGATCCTGACCTGTGTCCAAGTCCAC					PREDICTED: Rattus norvegicus hypothetical LOC314472 (predicted) (LOC314472), mRNA.					
Rattus norvegicus	RefSeq	GI_54635063-S	ILMN_284130	OLR1530	NM_001001101.1	NM_001001101.1		405997	54635063	NM_001001101.1	Olr1530	NP_001001101.1	ILMN_1365058	0005890593	S	315	CAGTGCAACCACAGAAATTTTCCTTCTGGTAGCGATGGCCTATGACCGGT	11	+	41794815-41794864	11q12	Rattus norvegicus olfactory receptor 1530 (Olr1530), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650185-S	ILMN_302114	TTLL10	NM_001024758.1	NM_001024758.1		298692	67514519	NM_001024758.1	Ttll10	NP_001019929.1	ILMN_1359306	0000730706	S	1865	CACAAGCATCCAGTGGCCTTGCGCTTTGCCATGCCCTCTCCAGGACCTAT	5	-	172879892-172879941	5q36	Rattus norvegicus tubulin tyrosine ligase-like family, member 10 (Ttll10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576040-S	ILMN_287628	OLR1434	NM_001000013.1	NM_001000013.1		287322	47576040	NM_001000013.1	Olr1434	NP_001000013.1	ILMN_1363894	0005220524	S	356	CCTTTGACAGGTATATAGCCATCTTCCAGCCCTTGCACTACCCTGTGTTC	10	+	44578741-44578790	10q22	Rattus norvegicus olfactory receptor 1434 (Olr1434), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1434	Olr1434
Rattus norvegicus	RefSeq	GI_47577754-S	ILMN_288587	OLR124	NM_001000157.1	NM_001000157.1		293260	47577754	NM_001000157.1	Olr124	NP_001000157.1	ILMN_1371651	0006660408	S	668	AGGCAGTATTTCAGCTCTCTTCCCAGAGTGCCCGCTCTAAAGCCTTGGGC	1	-	161490980-161491029	1q32	Rattus norvegicus olfactory receptor 124 (Olr124), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr124	Olr124
Rattus norvegicus	RefSeq	GI_62656708-S	ILMN_64381	RGD1310166_PREDICTED	XM_220804.4	XM_220804.4		303395	109488687	XM_220804.4	RGD1310166_predicted	XP_220804.4	ILMN_1367809	0002350242	S	610	TCAGCGGCATGAAGGAGAGGTTGTCCAAGATGCAAGCCCCTGGCCAAGAG	10	+	73449865-73449914	10q26	PREDICTED: Rattus norvegicus similar to Chromodomain-helicase-DNA-binding protein 1 (CHD-1) (predicted) (RGD1310166_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164058-S	ILMN_279208	V1RC27	NM_001009520.1	NM_001009520.1		494240	57164058	NM_001009520.1	V1rc27	NP_001009520.1	ILMN_1349305	0001770563	S	647	GCTACCTGAGAGCGTCCCCTGAGAAAAGGGCCACCCAGACCATCTTGATT	4	+	86533558-86533607	4q24	Rattus norvegicus vomeronasal 1 receptor, C27 (V1rc27), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164052-S	ILMN_279208	V1RC27	NM_001009520.1	NM_001009520.1		494240	57164058	NM_001009520.1	V1rc27	NP_001009520.1	ILMN_1370279	0003520524	S	646	AGCTACCTGAGAGCGTCCCCTGAGAAAAGGGCCACCCAGACCATCTTGAT	4	+	86533557-86533606	4q24	Rattus norvegicus vomeronasal 1 receptor, C27 (V1rc27), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393950-S	ILMN_56980	PGM1	NM_017033.2	NM_017033.2		24645	77627970	NM_017033.2	Pgm1	NP_058729.2	ILMN_1372657	0005570022	S	1569	ACTGAGCGGCACCGGGAGTGCTGGGGCTACCATCCGGCTCTATATTGATA	5	+	120650551-120650600	5q33	Rattus norvegicus phosphoglucomutase 1 (Pgm1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence TAS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence TAS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate [goid 4614] [evidence IEA]; Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate [goid 4614] [evidence ISS]; Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate [goid 4614] [evidence IEA]; Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate [goid 4614] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641341-S	ILMN_282442	RGD1311624	XR_009622.1	XR_009622.1		309001	109462940	XR_009622.1	RGD1311624		ILMN_1363128	0004570278	S	5670	AGGATGGTGGGGGGCAGGCCCTTCTTGTTGGGCTGGACTGTACATAGTGT				1q36	PREDICTED: Rattus norvegicus similar to KIAA0339 protein (RGD1311624), misc RNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661057-S	ILMN_55125	NID2	XM_573694.2	XM_573694.2		302248	109501206	XM_573694.2	Nid2	XP_573694.2	ILMN_1361855	0004010014	S	4609	CCCTGTCCAGCAGACCATGGGGTTGACCCAGCCTATTTATACTGCCCGGT	15	-	4801335-4801384	15p16	PREDICTED: Rattus norvegicus nidogen 2 (Nid2), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643297-S	ILMN_63992	LOC499587	XM_574912.1	XM_574912.1		499587	62643297	XM_574912.1	LOC499587	XP_574912.1	ILMN_1350426	0002370592	S	881	CAGTTCCTGCCCCACGGCTGGTCAGGGGTGAGTTTGTTCTCAGAGGGTGG				2q24	PREDICTED: Rattus norvegicus similar to hypothetical protein A930013N06 (LOC499587), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090360-S	ILMN_282047	EPDR1	NM_001007625.1	NM_001007625.1		291180	56090360	NM_001007625.1	Epdr1	NP_001007626.1	ILMN_1366996	0000580164	S	1934	GCACGTAGTCCGTGCCCCAAACATTTGCAGAGAGGAGCTCATCAGCTCTG	17	+	53160683-53160732	17q11	Rattus norvegicus ependymin related protein 1 (zebrafish) (Epdr1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]	The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MERP2; MGC94579	MERP2; MGC94579
Rattus norvegicus	RefSeq	GI_62663935-S	ILMN_277901	PLXDC2_PREDICTED	XM_001073244.1	XM_001073244.1		361282	109506203	XM_001073244.1	Plxdc2_predicted	XP_001073244.1	ILMN_1370798	0004730044	S	2700	GCCAGGAGTGTGACGAGATGACGATGCTTTTGGTTTAGGTGCAGGGTTGC				17q12.3	PREDICTED: Rattus norvegicus plexin domain containing 2 (predicted) (Plxdc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605749-S	ILMN_302988	TNK2	NM_001008336.1	NM_001008336.1		303882	56605749	NM_001008336.1	Tnk2	NP_001008337.1	ILMN_1351703	0006620309	S	3891	GGGAACCCCTGTAGGAATGTGGAGTGTTGGACAGAATGTGACCTGTGGCT	11	-	69927793-69927842	11q22	Rattus norvegicus tyrosine kinase, non-receptor, 2 (Tnk2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94214	MGC94214
Rattus norvegicus	RefSeq	GI_62659731-S	ILMN_282855	RGD1559826_PREDICTED	XM_001053906.1	XM_001053906.1		498281	109499034	XM_001053906.1	RGD1559826_predicted	XP_001053906.1	ILMN_1353591	0002480731	S	2174	TCCTCAGACCCCAGAGCAGTATTAGCGAGGCAGAGGTTAGAAGTGAGAGG				13q24	PREDICTED: Rattus norvegicus similar to nectin 4 (predicted) (RGD1559826_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173735-S	ILMN_269861	SCPEP1	NM_133383.1	NM_133383.1		114861	19173735	NM_133383.1	Scpep1	NP_596874.1	ILMN_1371122	0000460373	S	1709	GCGCATCCTCGGCTCCATCATAAGTTCAAAAGCCGCCTGCACCAAATGGG	10	-	77347732-77347781	10q26	Rattus norvegicus serine carboxypeptidase 1 (Scpep1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence IEP]	Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4185] [evidence TAS]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4185] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Risc	Risc
Rattus norvegicus	RefSeq	GI_60223078-S	ILMN_263608	RXFP2	NM_001012475.1	NM_001012475.1		363866	60223078	NM_001012475.1	Rxfp2	NP_001012493.1	ILMN_1371468	0001770546	S	2163	GTTGAACAAAATAGCCCTTGGGGACAGTATAATGAAGCCGGTCTCCCCGT	12	-	5326998-5327047	12p12	Rattus norvegicus relaxin/insulin-like family peptide receptor 2 (Rxfp2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with a protein hormone to initiate a change in cell activity [goid 16500] [evidence IEA]; Combining with a protein hormone to initiate a change in cell activity [goid 16500] [evidence ISS]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IPI]	Gpcr	Gpcr
Rattus norvegicus	RefSeq	GI_62660834-S	ILMN_57788	LOC498418	XM_573667.1	XM_573667.1		498418	62660834	XM_573667.1	LOC498418	XP_573667.1	ILMN_1354925	0006180731	S	878	ACCCTGCTCATCGGTCAAAGAAGGACTCGGAGGGCCTAGAGATGGGAGTC					PREDICTED: Rattus norvegicus similar to expressed sequence AI553587 (LOC498418), mRNA.					
Rattus norvegicus	RefSeq	GI_62656976-A	ILMN_280028	KRT40	NM_001008821.1	NM_001008821.1		287679	57012427	NM_001008821.1	Krt40	NP_001008821.1	ILMN_1376688	0006660433	S	932	CAGCCAACACTCTGGAAATTGAGCTCCAGGCACAGCAAACCCTGACAGAG	10	-	88484403-88484409:88485468-88485510	10q32.1	Rattus norvegicus keratin 40 (Krt40), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34879127-S	ILMN_288819	RGD1564725_PREDICTED	XM_001073556.1	XM_001073556.1		361174	109504437	XM_001073556.1	RGD1564725_predicted	XP_001073556.1	ILMN_1352699	0003190129	S	1415	GCAGGTTTTCCGACCAGGAGTTTGAAGTAGCATTCCTGTGTTCCGTGGGG				16q12.5	PREDICTED: Rattus norvegicus similar to hypothetical protein B230397C21 (predicted) (RGD1564725_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653899-S	ILMN_277674	CCPG1_PREDICTED	XM_001053270.1	XM_001053270.1		363098	109484914	XM_001053270.1	Ccpg1_predicted	XP_001053270.1	ILMN_1371005	0004850731	S	2276	TAGACACTTTGGGCACGTTTTCGCCCTTCCATTCGGACCCAGTCGACCTG				8q24	PREDICTED: Rattus norvegicus cell cycle progression 1 (predicted), transcript variant 3 (Ccpg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654005-S	ILMN_277674	CCPG1_PREDICTED	XM_001053270.1	XM_001053270.1		363098	109484914	XM_001053270.1	Ccpg1_predicted	XP_001053270.1	ILMN_1352750	0002850017	S	2747	CCAGAGCGTCGAACTGGCAGTCACATACATGTCTACGAGCGGAGGTTAAC				8q24	PREDICTED: Rattus norvegicus cell cycle progression 1 (predicted), transcript variant 3 (Ccpg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742795-S	ILMN_292502	LSAMP	NM_017242.1	NM_017242.1		29561	25742795	NM_017242.1	Lsamp	NP_058938.1	ILMN_1372909	0004060609	S	979	CGGGTCGGTGAGAGGAATCAACGGATCCATCAGTCTGGCCGTACCACTGT	11	-	60170590-60170639	11q21	Rattus norvegicus limbic system-associated membrane protein (Lsamp), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105298	MGC105298
Rattus norvegicus	RefSeq	GI_11276088-S	ILMN_265807	CCL11	NM_019205.1	NM_019205.1		29397	11276088	NM_019205.1	Ccl11	NP_062078.1	ILMN_1354427	0004230092	S	413	GGCACCCATCCCCCAAGGACTTGGCTTCATGTAGTTACAGATGGGACTGG	10	+	70283197-70283246	10q26	Rattus norvegicus chemokine (C-C motif) ligand 11 (Ccl11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scya11	Scya11
Rattus norvegicus	RefSeq	GI_62664005	ILMN_69720	LOC498813	XM_579872.1	XM_579872.1		498813	62664005	XM_579872.1	LOC498813	XP_579872.1	ILMN_1650271	0005910358	S	215	GGTGTTGGATTCTCTGGACCTGGGGGAAGAGGTGGCTCTAAGATGCTGGG					PREDICTED: Rattus norvegicus LOC498813 (LOC498813), mRNA.					
Rattus norvegicus	RefSeq	GI_16758875-S	ILMN_274143	ARL5A	NM_053979.1	NM_053979.1		117050	16758875	NM_053979.1	Arl5a	NP_446431.1	ILMN_1360968	0006650270	S	2397	GCCTCTCTGTCACATCAGTTCAGCACATAGCAGCACATCCTGGTGTTGCC	3	-	33904306-33904355	3q12	Rattus norvegicus ADP-ribosylation factor-like 5A (Arl5a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Arl5	Arl5
Rattus norvegicus	RefSeq	GI_55742811-S	ILMN_287842	FLCN	NM_199390.2	NM_199390.2		303185	55742811	NM_199390.2	Flcn	NP_955422.1	ILMN_1350527	0002470471	S	2800	TGTAGACTGTGGTGGGGTTGAGGCGGAGTGCCTCTCACCGTAGCAGCTTA	10	-	46110643-46110692	10q22	Rattus norvegicus folliculin (Flcn), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94558; Bhd	MGC94558; Bhd
Rattus norvegicus	RefSeq	GI_27730972-S	ILMN_289196	MRPS12_PREDICTED	XM_001078443.1	XM_001078443.1		292758	109461591	XM_001078443.1	Mrps12_predicted	XP_001078443.1	ILMN_1353867	0004920433	S	613	GCCCACTCCCTTGACTTCCATGTTCAGTGTCTGCAGGTTGACCTCATGCG				1q21	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S12 (predicted) (Mrps12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078982-S	ILMN_290796	DNAJC28	NM_001014124.1	NM_001014124.1		360699	62078982	NM_001014124.1	Dnajc28	NP_001014146.1	ILMN_1350341	0003390139	S	1306	CTGACATTAGCCAGGGAGAGGAAGAGAAAACGCCCAGCATCAAGGCAGGC	11	-	31584602-31584651	11q11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 28 (Dnajc28), mRNA.			Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658225-S	ILMN_56965	LZTR1_PREDICTED	XM_341017.3	XM_341017.3		360745	109493588	XM_341017.3	Lztr1_predicted	XP_341018.3	ILMN_1354916	0002340008	S	2499	GCTGGACATCATAGACTCCCTGGCCTCCCATATCTCTGACAAGCAGTGTG	11	-	85479729-85479778	11q23	PREDICTED: Rattus norvegicus leucine-zipper-like transcriptional regulator, 1 (predicted) (Lztr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664064-S	ILMN_263215	RGD1562268_PREDICTED	XM_001072983.1	XM_001072983.1		291781	109506965	XM_001072983.1	RGD1562268_predicted	XP_001072983.1	ILMN_1363737	0006770152	S	605	CCTACACCCTACAGTGTGGAACCAATACCTACTCCCTACAGTGTGGATCC				18p13	PREDICTED: Rattus norvegicus similar to mal5 (predicted) (RGD1562268_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643454-S	ILMN_48612	LOC499616	XM_579987.1	XM_579987.1		499616	62643454	XM_579987.1	LOC499616	XP_579987.1	ILMN_1351499	0003710288	S	456	ACTGCGTCCTGCTTCCCGATACCCCCAAGACTGTTTCCCATTAGCCAGTC					PREDICTED: Rattus norvegicus LOC499616 (LOC499616), mRNA.					
Rattus norvegicus	RefSeq	GI_62644362-S	ILMN_49425	LOC502593	XM_578079.1	XM_578079.1		502593	62644362	XM_578079.1	LOC502593	XP_578079.1	ILMN_1359241	0001090167	S	259	AGGACAACCAAACCTGTTACTCAGGGGCTGTGGGCCTGCTCAGAAGCTGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730494M16 (LOC502593), mRNA.					
Rattus norvegicus	RefSeq	GI_56912240-A	ILMN_263988	SLC9A10	NM_001008762.1	NM_001008762.1		288117	56912240	NM_001008762.1	Slc9a10	NP_001008762.1	ILMN_1376757	0004150273	S	2582	CGGTAACCCATGTTGTCCTCATCCATGGATCTGCAGAAGACTGCCAGTTG	11	-	56710262-56710311	11q21	Rattus norvegicus solute carrier family 9, member 10 (Slc9a10), mRNA.	A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	Gm610	Gm610
Rattus norvegicus	RefSeq	GI_23618919-A	ILMN_281354	PCTK1	NM_031077.1	NM_031077.1		81741	23618919	NM_031077.1	Pctk1	NP_112339.1	ILMN_1376856	0002060520	S	1827	TGACTCAGGCAGGCCAGCTTTCCGTGTGGTGGATACCGAGTTCTAAGCCA	X	-	12911179-12911207:12911208-12911228	Xq12	Rattus norvegicus PCTAIRE protein kinase 1 (Pctk1), transcript variant 2, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653521-S	ILMN_57135	LOC500978	XM_576388.1	XM_576388.1		500978	62653521	XM_576388.1	LOC500978	XP_576388.1	ILMN_1356269	0002680348	S	272	CAGCAACCTCCAGACCAAGCAACATCTGAGAGTTCTTGGCATCCTCTATG				8q22	PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC500978), mRNA.					
Rattus norvegicus	RefSeq	GI_62656115-S	ILMN_49129	ZFP692_PREDICTED	XM_220455.4	XM_220455.4		303164	109488137	XM_220455.4	Zfp692_predicted	XP_220455.4	ILMN_1355617	0006510181	S	1468	GTGGATTTACTTGCCGCCAGAAGGCCTCCCTAAACTGGCACCGACGCAAG	10	+	43952249-43952298	10q22	PREDICTED: Rattus norvegicus zinc finger protein 692 (predicted) (Zfp692_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646982-S	ILMN_67747	TSGA13_PREDICTED	XM_231582.3	XM_231582.3		312203	62646982	XM_231582.3	Tsga13_predicted	XP_231582.2	ILMN_1355475	0004920332	S	5249	CCTTTAAGCCCCTCTCTGCGCTCTCCAAGAACTGAGGGGACCTGGAGAAG				4q22	PREDICTED: Rattus norvegicus testis specific gene A13 (predicted) (Tsga13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34874516-S	ILMN_59136	DNAJD1_PREDICTED	XM_214238.2	XM_214238.2		290370	34874516	XM_214238.2	Dnajd1_predicted	XP_214238.1	ILMN_1360724	0000070064	S	757	TGACGGCAGTGGGATTTCTCCTGGGCAGAGCTAAAGTGTCCTCTCAATGC				15q11	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily D, member 1 (predicted) (Dnajd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660968-S	ILMN_267586	LOC680166	XM_001055983.1	XM_001055983.1		680166	109500164	XM_001055983.1	LOC680166	XP_001055983.1	ILMN_1350774	0003120711	S	852	CCAACATCCTGAATGAAAACAGCCCTTGAGAGACAACTTGGGGGACCGCC	14|NW_047432.1	+	187206-187220:187339-187373		PREDICTED: Rattus norvegicus hypothetical protein LOC680166 (LOC680166), mRNA.					
Rattus norvegicus	RefSeq	GI_56605725-S	ILMN_287260	EIF4B	NM_001008324.1	NM_001008324.1		300253	56605725	NM_001008324.1	Eif4b	NP_001008325.1	ILMN_1372721	0006450484	S	3199	GCAGACAGATGAGACCTTGGTTTTAGCACAAGTTCCTAGGCCTGCTGTGC	7	+	140836024-140836073	7q36	Rattus norvegicus eukaryotic translation initiation factor 4B (Eif4b), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]	MGC94923	MGC94923
Rattus norvegicus	RefSeq	GI_25742610-S	ILMN_272840	SLC20A1	NM_031148.1	NM_031148.1		81826	25742610	NM_031148.1	Slc20a1	NP_112410.1	ILMN_1369938	0000520014	S	2453	CATATACTGCTTTGTTGGCCTCACCAGCTTCTTCCCCAGCGTGCACAGGG	3	+	116827651-116827700	3q36	Rattus norvegicus solute carrier family 20 (phosphate transporter), member 1 (Slc20a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IDA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: HPO42-(out) + Na+(out) = HPO42-(in) + Na+(in) [goid 5316] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	PiT-1	PiT-1
Rattus norvegicus	RefSeq	GI_62641819-S	ILMN_300058	COX8A	NM_134345.1	NM_134345.1		171335	77736541	NM_134345.1	Cox8a	NP_599172.1	ILMN_1369379	0003840722	S	414	CCATGGTGACAACTGGGACCACATATATTGGTTCTGCTTGATGGGGTCCC	1	-	209886172-209886221	1q43	Rattus norvegicus cytochrome c oxidase, subunit VIIIa (Cox8a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2) [goid 5751] [evidence TAS]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659594-S	ILMN_269696	LOC312502	XM_001073801.1	XM_001073801.1		312502	109473810	XM_001073801.1	LOC312502	XP_001073801.1	ILMN_1367344	0006370288	S	5096	ATAAGGGTCAGGGGAGGAGCAGAAAGTAGGAGGGAGGCTTAGGAGGTGGC				4q34	PREDICTED: Rattus norvegicus similar to RAB11 family interacting protein 5 (class I) isoform 1 (LOC312502), mRNA.					
Rattus norvegicus	RefSeq	GI_62649901-A	ILMN_286679	DDOST	NM_001012104.1	NM_001012104.1		313648	58865777	NM_001012104.1	Ddost	NP_001012104.1	ILMN_1376809	0002970408	S	1057	CCTGAAGAGGAAGGGTGGCAAGTACAGTGTCCAGTTCAAGCTGCCGGACG	5	+	157089561-157089596:157089686-157089699	5q36	Rattus norvegicus dolichyl-diphosphooligosaccharide-protein glycosyltransferase (Ddost), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]	The glycosylation of a nitrogen atom of a free alpha amino terminal of a peptide [goid 6496] [evidence ISS]; The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine also occurs; this modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification [goid 18279] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]	Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine [goid 4579] [evidence IEA]; Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine [goid 4579] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556966-S	ILMN_296010	EEF1D	NM_001013104.1	NM_001013104.1		300033	61556966	NM_001013104.1	Eef1d	NP_001013122.1	ILMN_1364510	0004230139	S	1798	CTCCAAGCTCGTGCCTGTCGGCTATGGTATCCGGAAGCTGCAGATCCAGT	7	-	113870866-113870915	7q34	Rattus norvegicus eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) (Eef1d), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence IEA]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]	Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506800-S	ILMN_266809	IFNB1	NM_019127.1	NM_019127.1		24481	9506800	NM_019127.1	Ifnb1	NP_062000.1	ILMN_1348903	0002230433	S	183	GGAGGTGATGCACCCGTCACAGATGGAGAAGAGTTACACTGCCTTTGCCA	5	-	107837950-107837999	5q32	Rattus norvegicus interferon beta 1, fibroblast (Ifnb1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS];  [goid 5126] [evidence IEA]	Ifnb	Ifnb
Rattus norvegicus	RefSeq	GI_62663651-S	ILMN_61109	LOC498762	XM_574048.1	XM_574048.1		498762	62663651	XM_574048.1	LOC498762	XP_574048.1	ILMN_1352349	0004810288	S	155	AGATCCTCATGCGGAGAAGGAACTCGGGCCCTTAGTGCATGACTGCAATA					PREDICTED: Rattus norvegicus similar to ribosomal protein S19 (LOC498762), mRNA.					
Rattus norvegicus	RefSeq	GI_34876516-S	ILMN_50739	RGD1560805_PREDICTED	XM_225502.3	XM_225502.3		291269	109505153	XM_225502.3	RGD1560805_predicted	XP_225502.3	ILMN_1355848	0005050037	S	608	GAGAAGTGAGAAGCTACAGCTATATGAGCCAGGAGGACGTGCAGGAGCTT	17	+	72142211-72142260	17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (predicted) (RGD1560805_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981051-S	ILMN_298477	HSPE1	NM_012966.1	NM_012966.1		25462	6981051	NM_012966.1	Hspe1	NP_037098.1	ILMN_1361113	0000940504	S	184	GTCTTTTCACGTGTCCTGAGCCGGCCCACGGGAGTCTCCTTGCAGCAGGA	9	+	53895516-53895565	9q31	Rattus norvegicus heat shock protein 1 (chaperonin 10) (Hspe1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IPI]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]	Cpn10	Cpn10
Rattus norvegicus	RefSeq	GI_62659188-S	ILMN_51179	LOC498216	XM_573434.1	XM_573434.1		498216	62659188	XM_573434.1	LOC498216	XP_573434.1	ILMN_1355462	0003140035	S	117	GGGCTCTCAGGTAAGCCTGGAAGAGTTGTGACCTTTGCTGAAAATCCTAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510006C20 (LOC498216), mRNA.					
Rattus norvegicus	RefSeq	GI_62653250-S	ILMN_263000	CRSP6	XM_001074512.1	XM_001074512.1		300367	109484254	XM_001074512.1	Crsp6	XP_001074512.1	ILMN_1349530	0006200154	S	2338	CACAGACTCGTGCACTGGCGCTCTAGCCTTTCGCGGGAGTCCTGTTTAAA				8q12	PREDICTED: Rattus norvegicus cofactor required for Sp1 transcriptional activation, subunit 6 (Crsp6), mRNA.					
Rattus norvegicus	RefSeq	GI_62648652-S	ILMN_284907	ASPH_PREDICTED	XM_001063780.1	XM_001063780.1		312981	109476031	XM_001063780.1	Asph_predicted	XP_001063780.1	ILMN_1366563	0001410601	S	2529	GGATGCCTCGTCTTTCCGGCTGATATTTATTGTGGATGTGTGGCACCCCG				5q13	PREDICTED: Rattus norvegicus aspartate-beta-hydroxylase (predicted) (Asph_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981631-S	ILMN_295743	CNTN2	NM_012884.1	NM_012884.1		25356	6981631	NM_012884.1	Cntn2	NP_037016.1	ILMN_1367489	0002850735	S	4773	GAACTCGGCAGGGAGCACTGTCTGGAAGCCTCTCGGGCTTGCTCATTTCA	13	-	45400127-45400176	13q13	Rattus norvegicus contactin 2 (axonal) (Cntn2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IDA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	TAG-1; Tax; TAG-564; TAG1	TAG-1; Tax; TAG-564; TAG1
Rattus norvegicus	RefSeq	GI_62639325	ILMN_49578	LOC499122	XM_574416.1	XM_574416.1		499122	62639325	XM_574416.1	LOC499122	XP_574416.1	ILMN_1650886	0000070025	S	845	CACGACCGACAAGCCCAGCAGAGAACACGGCACATGAAGGCACATTCCAG					PREDICTED: Rattus norvegicus similar to zinc finger protein 570 (LOC499122), mRNA.					
Rattus norvegicus	RefSeq	GI_60223068-S	ILMN_301753	RAB18	NM_001012468.1	NM_001012468.1		307039	60223068	NM_001012468.1	Rab18	NP_001012486.1	ILMN_1374659	0004590400	S	1619	CTGTTGTTCCAAACTCTGACTGGCGGGGAGATGCTATTGCAGTGAGATCG	17	+	63529106-63529155	17q12.1	Rattus norvegicus RAB18, member RAS oncogene family (Rab18), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]	MGC109292	MGC109292
Rattus norvegicus	RefSeq	GI_62658808-S	ILMN_272393	UBC	XM_001073679.1	XM_001073679.1		50522	109497141	XM_001073679.1	Ubc	XP_001073679.1	ILMN_1350494	0003870035	S	786	TGTGAAGACCCTGACAGGCAAGACCATCACTCTGGATGTCGAGCCCAGTG				12q14	PREDICTED: Rattus norvegicus ubiquitin C, transcript variant 1 (Ubc), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658560-S	ILMN_276398	ASMTL_PREDICTED	XM_001075108.1	XM_001075108.1		288527	109496701	XM_001075108.1	Asmtl_predicted	XP_001075108.1	ILMN_1371440	0001850435	S	475	TCAGATGAGCTTGTGCAGGAGCATGTGGAGGGCGGGGAGCCCTGGGACAA				12q11	PREDICTED: Rattus norvegicus acetylserotonin O-methyltransferase-like (predicted) (Asmtl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718618-S	ILMN_49347	LOC501439	XM_576848.1	XM_576848.1		501439	62718618	XM_576848.1	LOC501439	XP_576848.1	ILMN_1352875	0005550358	S	517	TGGTTCCAAGGAGAACAAGGAGAATCAGGGTAGCACACTTCCTGGTTCCG					PREDICTED: Rattus norvegicus similar to DNA segment, Chr 18, Wayne State University 98, expressed (LOC501439), mRNA.					
Rattus norvegicus	RefSeq	GI_47577164-S	ILMN_302255	OLR749	NM_001000615.1	NM_001000615.1		404804	47577164	NM_001000615.1	Olr749	NP_001000615.1	ILMN_1360952	0003710497	S	282	CCATGGTTGTGTCTTCCAGATATTTGTCATTCATGTCCTTGGGGCTTCTG	3	+	96835490-96835539	3q34	Rattus norvegicus olfactory receptor 749 (Olr749), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr749	Olr749
Rattus norvegicus	RefSeq	GI_62653308-S	ILMN_69174	MRPL4_PREDICTED	XM_343354.3	XM_343354.3		363023	109483125	XM_343354.3	Mrpl4_predicted	XP_343355.3	ILMN_1374808	0000870136	S	1252	TGGAGCTGGTTGCTGCTGTGGGATCCTGTCAGCTGTTCATCCAGTGCTGG	8	+	20031834-20031883	8q13	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L4 (predicted) (Mrpl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27719348-S	ILMN_65071	LOC300351	XM_217084.1	XM_217084.1		300351	27719348	XM_217084.1	LOC300351	XP_217084.1	ILMN_1369655	0004570369	S	276	CCACGAGTGGACCGCAGGTAGTGTTCACATTGAAATCACAGAAACTGCAC					PREDICTED: Rattus norvegicus similar to Oligophrenin 1 (LOC300351), mRNA.					
Rattus norvegicus	RefSeq	GI_47576078-S	ILMN_297190	OLR1411	NM_001000783.1	NM_001000783.1		405061	47576078	NM_001000783.1	Olr1411	NP_001000783.1	ILMN_1358187	0000070102	S	884	TGAAGGAGACGGTGACAAGGCTCCTCAATAGAGGTTCAAACTCCTCATAG	10	+	36634982-36635031	10q22	Rattus norvegicus olfactory receptor 1411 (Olr1411), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1411	Olr1411
Rattus norvegicus	RefSeq	GI_62656696-S	ILMN_63841	LOC363661	XM_343950.2	XM_343950.2		363661	62656696	XM_343950.2	LOC363661	XP_343951.2	ILMN_1370655	0000670215	S	972	GCTACGTTTGAAGGACTCAGAGAGGCCCAGTACCCAGGACTACCATCGTG				10q26	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22578 (LOC363661), mRNA.					
Rattus norvegicus	RefSeq	GI_34871444-S	ILMN_65063	LOC362603	XM_347064.1	XM_347064.1		362603	34871444	XM_347064.1	LOC362603	XP_347065.2	ILMN_1350004	0000610025	S	208	CCTGCAGAGGACCTATGTGCGAAGACCATAAGTTCATCCTCAGCGGGGTG					PREDICTED: Rattus norvegicus hypothetical LOC362603 (LOC362603), mRNA.					
Rattus norvegicus	RefSeq	GI_62639768	ILMN_278915	RGD1305013_PREDICTED	XM_001079995.1	XM_001079995.1		308593	109461964	XM_001079995.1	RGD1305013_predicted	XP_001079995.1	ILMN_1651133	0002760021	S	1023	TCGAAGCACATCCAACAACTCAGAACTGCTCAGTGCCCTGGCTCTCCGAG				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC27699 (predicted) (RGD1305013_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650121-S	ILMN_64366	LOC298627	XM_233643.2	XM_233643.2		298627	62650121	XM_233643.2	LOC298627	XP_233643.2	ILMN_1365015	0001580373	S	34	ACAAAGGCCACGAAGTGACAGAAAACGTGTGCGGCTTCGCGCTCTACGAG				5q36	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC298627), mRNA.					
Rattus norvegicus	RefSeq	GI_62655280-S	ILMN_296572	RGD1563650_PREDICTED	XR_007903.1	XR_007903.1		316556	109487396	XR_007903.1	RGD1563650_predicted		ILMN_1361224	0005270736	S	318	GGCCGTGACCCACTTGAAGGGTGGGGCTAAAAAGGTCATCAAGTTTGCCC				9q34	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1563650_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659857-S	ILMN_52130	LOC498298	XM_579809.1	XM_579809.1		498298	62659857	XM_579809.1	LOC498298	XP_579809.1	ILMN_1367973	0000670286	S	709	GCCTTGGCTGGGGATTGGAGTTGTGTGACGTGAGGAGAGTAAAGTCAACG					PREDICTED: Rattus norvegicus LOC498298 (LOC498298), mRNA.					
Rattus norvegicus	RefSeq	GI_38454223-S	ILMN_284552	BWK1	NM_198743.1	NM_198743.1		296466	38454223	NM_198743.1	Bwk1	NP_942038.1	ILMN_1352731	0005360594	S	1042	ACCTCCGCTGAAGGCCTCCCACAGGACAGCACACAAGAAGTGCTGAAGTG	3	+	169813420-169813469	3q43	Rattus norvegicus Bwk1 leukemia-related gene (Bwk1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	TWA1	TWA1
Rattus norvegicus	RefSeq	GI_25742860-I	ILMN_282533	GCGR	NM_172092.1	NM_172092.1		24953	25742860	NM_172092.1	Gcgr	NP_742089.1	ILMN_1376024	0006200128	I	16	GCCGGGCCCCAGATCCCAGTGCGCGAGGAGCCCAGTCCTAGACCCAGCAA	10	+	109921457-109921473:109925347-109925379	10q32.3	Rattus norvegicus glucagon receptor (Gcgr), transcript variant 1, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IDA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IEA]; Combining with gastric inhibitory peptide to initiate a change in cell activity [goid 16519] [evidence IEA]	MGC93090	MGC93090
Rattus norvegicus	RefSeq	GI_47575880-S	ILMN_283814	PRSS27	NM_182949.2	NM_182949.2		287108	47575880	NM_182949.2	Prss27	NP_891994.2	ILMN_1357579	0005720600	S	747	TGCCCGCCGGAATCGTCCAGGTGTCTACATCCGTGTGGCTTCTCATTACC	10	+	13296020-13296069	10q12	Rattus norvegicus protease, serine 27 (Prss27), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Mpn	Mpn
Rattus norvegicus	RefSeq	GI_34872459-S	ILMN_265367	MTHFR_PREDICTED	XM_001074061.1	XM_001074061.1		362657	109477695	XM_001074061.1	Mthfr_predicted	XP_001074061.1	ILMN_1362074	0004280072	S	1665	CACATCGTGGACGTGAAGGGAGAGAACATCACTAATGCCCCTGAGCTGCA				5q36	PREDICTED: Rattus norvegicus 5,10-methylenetetrahydrofolate reductase (NADPH) (predicted) (Mthfr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653151-S	ILMN_269424	RGD1310791_PREDICTED	XM_001069132.1	XM_001069132.1		315347	109483032	XM_001069132.1	RGD1310791_predicted	XP_001069132.1	ILMN_1367933	0003290541	S	365	GACTGGGATAAAGACTTGTGGGAACAGACTAGCACCCCTTTTGTCTGGGG				7q36	PREDICTED: Rattus norvegicus similar to Hypothetical protein 1700006H03Rik (predicted) (RGD1310791_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664747-S	ILMN_58791	CD226_PREDICTED	XM_225664.4	XM_225664.4		307199	109506875	XM_225664.4	Cd226_predicted	XP_225664.4	ILMN_1350388	0007000288	S	830	ATGGCTGCTGACTCAGGACTTTACAGATGCCGCTCTGAGGCCAGTACGGG	18	+	86130503-86130552	18q13	PREDICTED: Rattus norvegicus CD226 antigen (predicted) (Cd226_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648625-S	ILMN_263784	RGD1309085_PREDICTED	XM_232684.3	XM_232684.3		297821	62648625	XM_232684.3	RGD1309085_predicted	XP_232684.3	ILMN_1367125	0003440068	S	795	AGCCAGGCACACTTGCACCTAAAGCATGCGAGGTCCTTCCACAGTCGCGT	5	-	24897043-24897066:24900457-24900482	5q13	PREDICTED: Rattus norvegicus similar to F23N19.9 (predicted) (RGD1309085_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644017-S	ILMN_54796	LOC502579	XM_578065.1	XM_578065.1		502579	62644017	XM_578065.1	LOC502579	XP_578065.1	ILMN_1351714	0006130348	S	406	GTGTCTGGGGAACAAGAACTCCAACGGAGAAGAAGGAGAAGTTGACTGGC					PREDICTED: Rattus norvegicus similar to Annexin A9 (Annexin 31) (Annexin XXXI) (LOC502579), mRNA.					
Rattus norvegicus	RefSeq	GI_47576976-S	ILMN_301458	OLR78	NM_001000135.1	NM_001000135.1		293221	47576976	NM_001000135.1	Olr78	NP_001000135.1	ILMN_1360082	0004210594	S	670	CTGAACGCCGTGCTGAGTATCGCATCCCGTGAAGAGCGACTAAAAGCTCT	1	+	160867432-160867481	1q32	Rattus norvegicus olfactory receptor 78 (Olr78), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr78; ratchr1-160945784-160946731_ORF	Olr78; ratchr1-160945784-160946731_ORF
Rattus norvegicus	RefSeq	GI_62717840-S	ILMN_51246	LOC367391	XM_346122.2	XM_346122.2		367391	62717840	XM_346122.2	LOC367391	XP_346123.2	ILMN_1354234	0000050152	S	1347	GAACCTGGACGAGCCGGTCTGAAGGGAGAACCTGGGATGAAAGGCGATTT					PREDICTED: Rattus norvegicus similar to MARCO (LOC367391), mRNA.					
Rattus norvegicus	RefSeq	GI_47271361-S	ILMN_274445	LRP4	NM_031322.1	NM_031322.1		83469	47271361	NM_031322.1	Lrp4	NP_112612.1	ILMN_1369548	0003870075	S	7462	GAGCCTTTAAACCCGTAGCTGGGGAGGAGGAAGAAAACAGGAGTGTGGTG	3	+	75874778-75874827	3q24	Rattus norvegicus low density lipoprotein receptor-related protein 4 (Lrp4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence ISS]; The growth of a synapse at a neuromuscular junction, the site of apposition of a motor end plate and the subneural cleft of the skeletal muscle fiber that it innervates [goid 51124] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Megf7	Megf7
Rattus norvegicus	RefSeq	GI_47576290-S	ILMN_275212	OLR1286	NM_001000799.1	NM_001000799.1		405084	47576290	NM_001000799.1	Olr1286	NP_001000799.1	ILMN_1359026	0001230121	S	846	TCCCATGCTGAACCCCTTGGTCTACAGCCTGAGGAATAAGGATGTCAGTG	8	-	41458313-41458362	8q22	Rattus norvegicus olfactory receptor 1286 (Olr1286), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1286	Olr1286
Rattus norvegicus	RefSeq	GI_31795570-S	ILMN_266136	PRG-2	NM_181634.2	NM_181634.2		314614	31795570	NM_181634.2	Prg-2	NP_853665.1	ILMN_1364502	0003840064	S	2422	GGCGCTGGGGGAGAGAGAAGTGGAGGCAGAGGCAGAAAGCTACTACAGAA				7q11	Rattus norvegicus plasticity-related gene 2 (Prg-2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646976-S	ILMN_67488	LOC367676	XM_346250.2	XM_346250.2		367676	62646976	XM_346250.2	LOC367676	XP_346251.2	ILMN_1362034	0002350647	S	311	TTTACCAAATCCTGGACCTTTATATCTATGATGAGTGGGACCACAGGTAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC367676), mRNA.					
Rattus norvegicus	RefSeq	GI_62648612-S	ILMN_291849	RGD1565038_PREDICTED	XM_001071166.1	XM_001071166.1		500404	109476106	XM_001071166.1	RGD1565038_predicted	XP_001071166.1	ILMN_1353614	0006860242	S	602	ACTTAGACGTCCAGCATTCTCTGCGCCTCTGCCAATCACAGGGACCGGCC					PREDICTED: Rattus norvegicus similar to pre-mRNA splicing factor-like (predicted) (RGD1565038_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652175-S	ILMN_55937	LOC503140	XM_578661.1	XM_578661.1		503140	62652175	XM_578661.1	LOC503140	XP_578661.1	ILMN_1365041	0003610463	S	374	GCAGCCTGAGGTCTTAGCGAGTGCTGGGAGCTTCCGTCCGGTGGGTTCCA					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC503140), mRNA.					
Rattus norvegicus	RefSeq	GI_47576936-S	ILMN_287952	OLR246	NM_001000216.1	NM_001000216.1		293391	47576936	NM_001000216.1	Olr246	NP_001000216.1	ILMN_1361394	0003990022	S	425	GCTTCCTGCTGGGGGCATCATACTTGGGTGGATGCATGAATGCTTCATCG	1	+	165458414-165458463	1q33	Rattus norvegicus olfactory receptor 246 (Olr246), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr246	Olr246
Rattus norvegicus	RefSeq	GI_13928911-S	ILMN_300755	TGM1	NM_031659.1	NM_031659.1		60335	13928911	NM_031659.1	Tgm1	NP_113847.1	ILMN_1360947	0000360041	S	2359	CGGGGGTAACGAGACGGTTACACTGCGCCAGACATTTGTTCCTGTGCGAC	15	-	33846665-33846714	15p13	Rattus norvegicus transglutaminase 1, K polypeptide (Tgm1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31224] [evidence ISS]	Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence NAS]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns [goid 31424] [evidence IEA]	Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence NAS]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IEA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665150-S	ILMN_290033	ELMO3	NM_001030028.1	NM_001030028.1		291962	71795622	NM_001030028.1	Elmo3	NP_001025199.1	ILMN_1366522	0006520056	S	2116	CTGCTGGGCAGTACTATGGGGAGTGAACAGACTCGGCTAGACCTGGAGCA	19	+	35123897-35123946	19q11	Rattus norvegicus engulfment and cell motility 3, ced-12 homolog (C. elegans) (Elmo3), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124673	MGC124673
Rattus norvegicus	RefSeq	GI_62660898-S	ILMN_61192	LOC501927	XM_577352.1	XM_577352.1		501927	62660898	XM_577352.1	LOC501927	XP_577352.1	ILMN_1361071	0002850671	S	565	GGCACTCACGGAACATGCTCTGTTCGCACACATGTTGGCACTCACCTCTC					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2D 4 (putative) (LOC501927), mRNA.					
Rattus norvegicus	RefSeq	GI_62657634-S	ILMN_60007	IFNAR1_PREDICTED	XM_213649.4	XM_213649.4		288264	109492931	XM_213649.4	Ifnar1_predicted	XP_213649.4	ILMN_1367808	0004280041	S	5127	CTTCCTCAGCCTGCATTCACTTCTTTTGCAGCCCCAGTGAGGGTTCTGGG	11	+	31479673-31479722	11q11	PREDICTED: Rattus norvegicus interferon (alpha and beta) receptor 1 (predicted) (Ifnar1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642555-S	ILMN_70012	EIF3S10	XM_238649.4	XM_238649.4		292148	109460292	XM_238649.4	Eif3s10	XP_238649.4	ILMN_1372593	0006400093	S	4879	GCTGCTCAAGTGCAGGTCCAGAACAGTACAGCTTTGGGTCCCTAGAGCAT	1	-	267369736-267369785	1q55	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 3, subunit 10 (theta) (Eif3s10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717986-S	ILMN_268077	LOC684205	XM_001069399.1	XM_001069399.1		684205	109515138	XM_001069399.1	LOC684205	XP_001069399.1	ILMN_1368459	0005890301	S	417	CCTGTCATGTGCAGTGGGCTCTCATTCTTGTGGGTGGGGGCTCATTTGTG					PREDICTED: Rattus norvegicus similar to MIC2 like 1 (LOC684205), mRNA.					
Rattus norvegicus	RefSeq	GI_62663721-S	ILMN_65008	LOC498775	XM_574061.1	XM_574061.1		498775	62663721	XM_574061.1	LOC498775	XP_574061.1	ILMN_1350809	0006200026	S	3425	CCTTCATACCGCCACATGATTTCTTCCTGAAGAACAGCAGCCTCAGCTCC				17q12.1	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC498775), mRNA.					
Rattus norvegicus	RefSeq	GI_62651086-S	ILMN_69258	LOC314325	XM_234425.3	XM_234425.3		314325	62651086	XM_234425.3	LOC314325	XP_234425.3	ILMN_1349170	0001190162	S	1451	GCGCTTGCTAAATGCTCGCTGCCTTGGTCGTGTGGGAGAGAAGAAACCTC				6q31	PREDICTED: Rattus norvegicus similar to FLJ20689 (predicted) (LOC314325), mRNA.					
Rattus norvegicus	RefSeq	GI_62653524-S	ILMN_57310	LOC500979	XM_576389.1	XM_576389.1		500979	62653524	XM_576389.1	LOC500979	XP_576389.1	ILMN_1374911	0002900025	S	52	GCTCTGGCACCATAAATCCTGAGCCCCTACGGAGAGTTCTTGGCATCCTC				8q22	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4b (LOC500979), mRNA.					
Rattus norvegicus	RefSeq	GI_62078596-S	ILMN_286157	RGD1310425	NM_001013934.1	NM_001013934.1		298398	62078596	NM_001013934.1	RGD1310425	NP_001013956.1	ILMN_1369713	0002510717	S	1626	AGACCTTATGGGACAAACACTGCCAAGAACCGGCACAGGCCCTTCTGAGC	5	-	60136764-60136766:60136767-60136804:60137166-60137174	5q22	Rattus norvegicus hypothetical LOC298398 (RGD1310425), mRNA.					
Rattus norvegicus	RefSeq	GI_62660241-S	ILMN_55957	LOC364117	XM_577322.1	XM_577322.1		364117	62660241	XM_577322.1	LOC364117	XP_577322.1	ILMN_1367709	0005390136	S	122	GCACCCTACTGGACACCAAAGTAAGGAGGAGCTGGGCCACATCATTCAAG				14p22	PREDICTED: Rattus norvegicus similar to homolog of yeast ribosome biogenesis regulatory protein RRS1 (LOC364117), mRNA.					
Rattus norvegicus	RefSeq	GI_11693169-S	ILMN_296517	SLC25A11	NM_022398.1	NM_022398.1		64201	11693169	NM_022398.1	Slc25a11	NP_071793.1	ILMN_1374082	0002350563	S	626	TGCTGGACTCAGGCTACTTCTCTGACAACATTCTGTGCCACTTCTGCGCC	10	-	57525042-57525080:57525165-57525175	10q24	Rattus norvegicus solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 (Slc25a11), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IMP]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IMP]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: oxoglutarate(out) + malate(in) = oxoglutarate(in) + malate(out) [goid 15367] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34873624-S	ILMN_275116	IL9	XM_001068265.1	XM_001068265.1		116558	109505448	XM_001068265.1	Il9	XP_001068265.1	ILMN_1349507	0000630100	S	608	TCCTGAAGACCTTCCAGAAGACAGAGGTGCAAGTGCAGAGAAGCAGGGCG				17p14	PREDICTED: Rattus norvegicus interleukin 9 (Il9), mRNA.		Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-5 [goid 45407] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62663110-S	ILMN_58061	LOC502107	XM_577550.1	XM_577550.1		502107	62663110	XM_577550.1	LOC502107	XP_577550.1	ILMN_1368594	0007100528	S	1810	TCTCTGACAGACAAGCATCCCGTGGGCCACCACCATGCGTCCTGGATTGA					PREDICTED: Rattus norvegicus LOC502107 (LOC502107), mRNA.					
Rattus norvegicus	RefSeq	GI_16758631-S	ILMN_61308	PRL2A1	NM_053791.2	NM_053791.2		116474	67972662	NM_053791.2	Prl2a1	NP_446243.1	ILMN_1358043	0003130215	S	552	ACAGAAGATGAGAACTACCCTGGCTGGTCTGGACTGGCATCCTTGCAGTC	17	-	43471133-43471182	17p11	Rattus norvegicus Prolactin family 2, subfamily a, member 1 (Prl2a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpm	Prlpm
Rattus norvegicus	RefSeq	GI_40254750-S	ILMN_286829	RAB11B	NM_032617.2	NM_032617.2		79434	40254750	NM_032617.2	Rab11b	NP_116006.1	ILMN_1363364	0002350397	S	1130	ATACCCGAAGAGCCAGGCATCAGGGGCTGAGCAGGTGGACATTCTGGGCT	7	-	16233166-16233215	7q12	Rattus norvegicus RAB11B, member RAS oncogene family (Rab11b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the controlled movement of a cell [goid 6928] [evidence NAS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13591881-S	ILMN_287611	SNAP25	NM_030991.1	NM_030991.1		25012	13591881	NM_030991.1	Snap25	NP_112253.1	ILMN_1348840	0003360129	S	1574	ACCAGCAAAACCTGCAGCTGTGTCACCTTCTTCTGTCAACATACAGACTG	3	+	124894217-124894266	3q36	Rattus norvegicus synaptosomal-associated protein 25 (Snap25), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IPI]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [pmid 16598260] [evidence IDA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [pmid 16598260] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [pmid 16598260] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEP]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IMP]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence IDA]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence IEP]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IMP]; The release of a neurotransmitter into the synaptic cleft, where the release step is dependent on the presence of calcium ions (Ca2+). The neurotransmitter is contained within a membrane-bounded vesicle, and is released by fusion of the vesicle with the presynaptic plasma membrane of a nerve cell [goid 48791] [evidence IDA]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence IEP]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IDA]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence ISS]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IPI]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IPI]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10625663] [evidence IPI]	SNAP-25B; MGC105414	SNAP-25B; MGC105414
Rattus norvegicus	RefSeq	GI_62651014-S	ILMN_282017	LOC500688	XM_001054356.1	XM_001054356.1		500688	109479598	XM_001054356.1	LOC500688	XP_001054356.1	ILMN_1350493	0004760138	S	2188	GGTGCAATTTCAAAAGCAGTTTTACGTCCAGTAGGGGACCAATATCCCCC				6q24	PREDICTED: Rattus norvegicus similar to a disintegrin and metalloprotease domain 4 (LOC500688), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_53850589-S	ILMN_273006	RGD1359156	NM_001005531.1	NM_001005531.1		287747	53850589	NM_001005531.1	RGD1359156	NP_001005531.1	ILMN_1360004	0003840528	S	922	CCTGGATATTAACGAGTCAGGGCTCAAGAAAGCCACCATCCAAGGGGAAG	10	-	92394687-92394736	10q32.1	Rattus norvegicus similar to hypothetical protein FLJ25414 (RGD1359156), mRNA.				Vad1.2; MGC95247	Vad1.2; MGC95247
Rattus norvegicus	RefSeq	GI_52138588-S	ILMN_300404	GCLC	NM_012815.2	NM_012815.2		25283	52138588	NM_012815.2	Gclc	NP_036947.1	ILMN_1359516	0000580537	S	2671	CGTCAGTGCAGCCACCAGGTTTCCGCCCTCTCTCAAGTTTGCTGTAGCAG	8	+	82762471-82762520	8q31	Rattus norvegicus glutamate-cysteine ligase, catalytic subunit (Gclc), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine [goid 17109] [evidence IEA]; An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine [goid 17109] [evidence ISS]; An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine [goid 17109] [evidence IDA]	The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid [goid 6534] [evidence ISS]; The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid [goid 6534] [evidence ISS]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence IMP]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The chemical reactions and pathways involving L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 19852] [evidence IEA]; The chemical reactions and pathways involving L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 19852] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31397] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31397] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32436] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32436] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence ISS]; Any process that modulates the size of blood vessels [goid 50880] [evidence ISS]; Any process that modulates the size of blood vessels [goid 50880] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions [goid 51409] [evidence IMP]; Any process that modulates the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive [goid 51900] [evidence IEA]; Any process that modulates the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive [goid 51900] [evidence ISS]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence ISS]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence IMP]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence ISS]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence ISS]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence ISS]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence ISS]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence ISS]	Glclc; MGC93096	Glclc; MGC93096
Rattus norvegicus	RefSeq	GI_62657344-S	ILMN_270534	GGA3_PREDICTED	XM_001081704.1	XM_001081704.1		360658	109492204	XM_001081704.1	Gga3_predicted	XP_001081704.1	ILMN_1352867	0003290152	S	2905	GGCTTTCTGGGAAAGGCATACCTCCTGCAGTGGGAATAGGCCATCCTACT				10q32.3	PREDICTED: Rattus norvegicus golgi associated, gamma adaptin ear containing, ARF binding protein 3 (predicted), transcript variant 2 (Gga3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576188-S	ILMN_274124	OLR1350	NM_001000752.1	NM_001000752.1		405022	47576188	NM_001000752.1	Olr1350	NP_001000752.1	ILMN_1356248	0004540093	S	639	CATCGTGAGCACCACCTTAGCTGTCCTGGTTTCCTATGGCTACATCACCG	9	+	91798173-91798222	9q36	Rattus norvegicus olfactory receptor 1350 (Olr1350), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1350	Olr1350
Rattus norvegicus	RefSeq	GI_62647749-S	ILMN_273532	GKN2	NM_001039686.1	NM_001039686.1		297419	89199239	NM_001039686.1	Gkn2	NP_001034775.1	ILMN_1371766	0004210347	S	514	CACTGGAGGCTGTGCAAAGGTGGGGATCCTGGGTATCCTGGGGATCTCTA	4	+	121530204-121530253	4q34	Rattus norvegicus gastrokine 2 (Gkn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_49225023-S	ILMN_277853	GRP	NM_133570.3	NM_133570.3		171101	49225023	NM_133570.3	Grp	NP_598254.1	ILMN_1371417	0002690435	S	294	ATGCAGCTGACAGAGATGGCCTGAAGGAGCAACTGAGGGGATACATCCGC	18	+	62169462-62169511	18q12.1	Rattus norvegicus gastrin releasing peptide (Grp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]	The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IEA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644608	ILMN_61687	LOC499734	XM_580009.1	XM_580009.1		499734	62644608	XM_580009.1	LOC499734	XP_580009.1	ILMN_1650966	0006020551	S	1222	TCTCCAGAGCCAAGGCGTTCACAGCTCGAGGTGGTTTGGCCTGAGACTCT					PREDICTED: Rattus norvegicus LOC499734 (LOC499734), mRNA.					
Rattus norvegicus	RefSeq	GI_62639392-S	ILMN_52945	LOC361554	XM_341841.2	XM_341841.2		361554	62639392	XM_341841.2	LOC361554	XP_341842.2	ILMN_1370830	0000450047	S	2932	AGACGTGTGGGAAACTGCACTGTAGGAGAATTGGGCTACTTAAGGGTGTC				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700023B17 (predicted) (LOC361554), mRNA.					
Rattus norvegicus	RefSeq	GI_62656356-S	ILMN_62157	RGD1563202_PREDICTED	XM_237782.3	XM_237782.3		287456	109488401	XM_237782.3	RGD1563202_predicted	XP_237782.2	ILMN_1354936	0002810746	S	647	CAGGAGTCAGAGGTCAACTTCCAACCCACTTCCTCGTGTGCACCCTTCCC	10	+	57295248-57295297	10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110030J09 (predicted) (RGD1563202_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666519-S	ILMN_297412	MAOA	XM_001058993.1	XM_001058993.1		29253	109511496	XM_001058993.1	Maoa	XP_001058993.1	ILMN_1354330	0001990048	S	2513	GGGTTGAAGAACCCGAGTCCAAGGATGTTCCAGCCATTGAAATTACCCAC				Xq12	PREDICTED: Rattus norvegicus monoamine oxidase A (Maoa), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 42424] [evidence NAS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence IDA]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence IMP]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence IDA]; The chemical reactions and pathways involving phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds [goid 42443] [evidence IDA]; The chemical reactions and pathways involving phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds [goid 42443] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IDA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IMP]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IMP]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 51378] [evidence IMP]; Interacting selectively with serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 51378] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_32996718-S	ILMN_57100	RSA-14-44	NM_182670.1	NM_182670.1		297173	32996718	NM_182670.1	RSA-14-44	NP_872611.1	ILMN_1363929	0000840519	S	1073	TCACCATCCTTATTCTCTTCGAAATGTCTCTCCAGGCAGCTGTGGTAGAG				4q31	Rattus norvegicus RSA-14-44 protein (RSA-14-44), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC94489	MGC94489
Rattus norvegicus	RefSeq	GI_62718215-S	ILMN_48460	LOC363354	XM_343690.2	XM_343690.2		363354	62718215	XM_343690.2	LOC363354	XP_343691.2	ILMN_1348851	0006900026	S	597	GACCATCAATGGCCAGAACCAGCATTATCAGGTATGGACGAGCAGATGTG					PREDICTED: Rattus norvegicus hypothetical LOC363354 (LOC363354), mRNA.					
Rattus norvegicus	RefSeq	GI_62648672-S	ILMN_58302	LOC313067	XM_232818.4	XM_232818.4		313067	109474672	XM_232818.4	LOC313067	XP_232818.4	ILMN_1349482	0000130129	S	2713	TTCTCGAAAAGATCCTCGGGATGGAGTTCATGGAGCCCCTGGAGAAGAGC	5	-	26327384-26327433	5q13	PREDICTED: Rattus norvegicus similar to transmembrane protein 67 (LOC313067), mRNA.					
Rattus norvegicus	RefSeq	GI_62649736-S	ILMN_67754	COL16A1	XM_345584.3	XM_345584.3		366474	109475563	XM_345584.3	Col16a1	XP_345585.3	ILMN_1364416	0004120592	S	4959	CCACTGCAACCCCTCAGACTGTTTTGGGGCCATGCCAATGGAGCAGCAGT	5	+	149126068-149126117	5q36	PREDICTED: Rattus norvegicus procollagen, type XVI, alpha 1 (Col16a1), mRNA.		The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with an integrin [goid 5178] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639245-S	ILMN_284537	SAMD4B	XM_001073537.1	XM_001073537.1		308473	109461537	XM_001073537.1	Samd4b	XP_001073537.1	ILMN_1365617	0000430707	S	3127	TGTGGGTAGGAACCAGGGAAGGAGGGTTGTTGGGTTTTTGTTTCCTTGCC				1q21	PREDICTED: Rattus norvegicus sterile alpha motif domain containing 4B, transcript variant 3 (Samd4b), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_50657379-S	ILMN_277772	CLIC1	NM_001002807.1	NM_001002807.1		406864	50657379	NM_001002807.1	Clic1	NP_001002807.1	ILMN_1356458	0000360670	S	1038	CACTTGTGCAGGGCCGGGGATGGGACTGGGGATAAGGGAAAGATTAGAGG	20	-	3499010-3499059	20p12	Rattus norvegicus chloride intracellular channel 1 (Clic1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence TAS]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654191-S	ILMN_67683	KY_PREDICTED	XM_236571.4	XM_236571.4		315962	109483873	XM_236571.4	Ky_predicted	XP_236571.3	ILMN_1360441	0006380494	S	2372	ATGACCAGTGAGGGAGGACAGCATTATCCACAGTCTCCCAGGGCTACGGC	8	+	107508669-107508679:107508680-107508718	8q32	PREDICTED: Rattus norvegicus kyphoscoliosis (predicted) (Ky_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647140-S	ILMN_275360	ZYX	XM_001072096.1	XM_001072096.1		114636	109473413	XM_001072096.1	Zyx	XP_001072096.1	ILMN_1353219	0005900010	S	2730	CGAAATGTAGGCTATTGGTGCTGCTCCTGCCCAGTCAATCAGAACTCTGC				4q23	PREDICTED: Rattus norvegicus zyxin (Zyx), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647138-S	ILMN_275360	ZYX	XM_001072096.1	XM_001072096.1		114636	109473413	XM_001072096.1	Zyx	XP_001072096.1	ILMN_1370287	0006350110	S	2480	CTCTTGGAGTTGAAATAAAGGGTCTTGATGGGGAAAAAGATCAGGGGAGG				4q23	PREDICTED: Rattus norvegicus zyxin (Zyx), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660394	ILMN_284328	RGD1310958_PREDICTED	XM_001076815.1	XM_001076815.1		305307	109500552	XM_001076815.1	RGD1310958_predicted	XP_001076815.1	ILMN_1650166	0007000044	S	2168	ACAGAGACAACCAGAGAGTCGTCATAGACCACAGAGGAGTTCCCAAGAAC				14p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C130090K23 (predicted) (RGD1310958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642781-S	ILMN_60877	S100Z_PREDICTED	XM_226710.3	XM_226710.3		294661	109464267	XM_226710.3	S100z_predicted	XP_226710.1	ILMN_1369418	0002900131	S	228	GGTCATGGTGGCAGCTCTGACGGTCGCTTGTAACGATTACTTTGTGGAGC	2	-	25852495-25852544	2q12	PREDICTED: Rattus norvegicus S100 calcium binding protein, zeta (predicted) (S100z_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34851382-S	ILMN_70065	PHKB	XM_341657.2	XM_341657.2		170631	62664959	XM_341657.2	Phkb	XP_341658.2	ILMN_1357202	0005670035	S	3578	CCTGCTGGAGGGAGAAGTCAAGCCCACCAATGAGGACTCGTGCCTGGTTA					PREDICTED: Rattus norvegicus phosphorylase kinase, beta (Phkb), mRNA.		The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: 4 ATP + 2 phosphorylase b = 4 ADP + phosphorylase a [goid 4689] [evidence IDA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652953-S	ILMN_49522	LOC500919	XM_580134.1	XM_580134.1		500919	62652953	XM_580134.1	LOC500919	XP_580134.1	ILMN_1360506	0001850142	S	396	AGACCTAGTTTCTTCAACTTTTTCTGCCAGAAGGGAGGACGCCGCGGCTC					PREDICTED: Rattus norvegicus LOC500919 (LOC500919), mRNA.					
Rattus norvegicus	RefSeq	GI_42627876-S	ILMN_298055	IL4	NM_201270.1	NM_201270.1		287287	42627876	NM_201270.1	Il4	NP_958427.1	ILMN_1357589	0000610494	S	192	CGTCCTTACGGCAACAAGGAACACCACGGAGAACGAGCTCATCTGCAGGG	10	-	39075858-39075889:39079663-39079680	10q22	Rattus norvegicus interleukin 4 (Il4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IEA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes [goid 48295] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes [goid 48295] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence IEA]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of B cell activation [goid 50871] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-4 receptor [goid 5136] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the interleukin-4 receptor [goid 5136] [evidence IEA]	Il4e12	Il4e12
Rattus norvegicus	RefSeq	GI_62646332-S	ILMN_271544	TOMM34_PREDICTED	XM_001069958.1	XM_001069958.1		311621	109471266	XM_001069958.1	Tomm34_predicted	XP_001069958.1	ILMN_1366369	0006510095	S	832	TGGTCCTGAAGCAGTACAAGGAGGCAGAGAAGGACTGCACAGAAGCCCTC				3q42	PREDICTED: Rattus norvegicus translocase of outer mitochondrial membrane 34 (predicted), transcript variant 2 (Tomm34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655675-S	ILMN_65783	LOC497864	XM_579753.1	XM_579753.1		497864	62655675	XM_579753.1	LOC497864	XP_579753.1	ILMN_1364214	0005290079	S	590	AGTGTTACAGCTCTCTTGAACAGGGACCCCGAGCAGCAAAATCGCTCGGC					PREDICTED: Rattus norvegicus LOC497864 (LOC497864), mRNA.					
Rattus norvegicus	RefSeq	GI_62654084-S	ILMN_292993	ZIC4_PREDICTED	XM_001064401.1	XM_001064401.1		315882	109485087	XM_001064401.1	Zic4_predicted	XP_001064401.1	ILMN_1351797	0002370300	S	2236	CCCGAGAAACTTACCAAAGGAGGATTCCCAGCTCAGTTGTGGGGTGGCCG				8q31	PREDICTED: Rattus norvegicus Zic family member 4 (predicted) (Zic4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641424-S	ILMN_62566	OLR97_PREDICTED	XM_219164.4	XM_219164.4		293238	109459164	XM_219164.4	Olr97_predicted	XP_219164.4	ILMN_1359591	0004810039	S	819	GCCCAGGCACACTCTCATCCTCCTGGCAAACCTATATCTACTGTTACCCC	1	-	161129175-161129224	1q32	PREDICTED: Rattus norvegicus olfactory receptor 97 (predicted) (Olr97_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654409-S	ILMN_55468	GLB1_MAPPED	XM_236675.4	XM_236675.4		316033	109484051	XM_236675.4	Glb1_mapped	XP_236675.4	ILMN_1371130	0004050487	S	1606	TGTCCTCACCAACTGGACAATGTTCCCACTGGACACTGAGGCCCTGGCAC	8	+	118851876-118851925	8q32	PREDICTED: Rattus norvegicus galactosidase, beta 1 (mapped) (Glb1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_46048644-S	ILMN_275463	CRYAB	NM_012935.2	NM_012935.2		25420	46048644	NM_012935.2	Cryab	NP_037067.1	ILMN_1365447	0004200463	S	883	CACGGCAAGCACGAAGAGCGCCAGGACGAACATGGCTTCATCTCCAGGGA	8	+	54109164-54109184:54111165-54111193	8q23	Rattus norvegicus crystallin, alpha B (Cryab), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; An assembly of actin filaments that are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 32432] [evidence IDA]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence ISS]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IMP]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence IMP]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IPI]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; Assembly or disassembly of microtubules by the addition or removal of tubulin heterodimers from a microtubule [goid 31109] [evidence IMP]; Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances within cells [goid 32387] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]	The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IDA]	AACRYA	AACRYA
Rattus norvegicus	RefSeq	GI_62643995	ILMN_53554	LOC502563	XM_578049.1	XM_578049.1		502563	62643995	XM_578049.1	LOC502563	XP_578049.1	ILMN_1650155	0006660309	S	119	TTACAAGCCCGATGTTCTCATCAAAGGCAAACTGGGGCATGGTGTTTGAG					PREDICTED: Rattus norvegicus similar to TDPOZ4 (LOC502563), mRNA.					
Rattus norvegicus	RefSeq	GI_62641027-S	ILMN_287575	ARHGEF17_PREDICTED	XM_001067343.1	XM_001067343.1		308862	109462523	XM_001067343.1	Arhgef17_predicted	XP_001067343.1	ILMN_1354567	0001190519	S	5953	AGTGAGACTGTGGGCCGAGATGACAGCACAAACCACCTGCTCCTGTGGAG				1q32	PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 17 (predicted) (Arhgef17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465602-S	ILMN_293760	AKR1B8	NM_173136.1	NM_173136.1		286921	27465602	NM_173136.1	Akr1b8	NP_775159.1	ILMN_1354910	0002360494	S	755	CCGCCAAGCACAAGAAAACCACAGCCCAGGTTCTTATTCGGTTCCACATC	4	+	61723600-61723628:61724310-61724330	4q22	Rattus norvegicus aldo-keto reductase family 1, member B8 (Akr1b8), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC91427	MGC91427
Rattus norvegicus	RefSeq	GI_32563564-S	ILMN_274780	LOC299282	NM_182474.1	NM_182474.1		299282	32563564	NM_182474.1	LOC299282	NP_872280.1	ILMN_1358676	0004230193	S	1382	AGACGTTGGGCGCGAGACGTTGGGTGCGAGACAGAGGAGGTCCTTCCAGA	6	+	128449367-128449416	6q32	Rattus norvegicus Serine protease inhibitor (LOC299282), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Ab1-021; Spin1; CPi-23; Spin2a; SPI1	Ab1-021; Spin1; CPi-23; Spin2a; SPI1
Rattus norvegicus	RefSeq	GI_57114329-S	ILMN_286567	UQCRFS1	NM_001008888.1	NM_001008888.1		291103	57114329	NM_001008888.1	Uqcrfs1	NP_001008888.1	ILMN_1354746	0003450451	S	880	GACACTTGGACTCAGGGCCTAGGTTTCTTTCGGTCTTCATGTCCCCTCAG	17	+	40433875-40433875:40433876-40433924	17p12	Rattus norvegicus ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 (Uqcrfs1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A part of the respiratory chain, containing about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1 [goid 45275] [evidence TAS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c [goid 8121] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c [goid 8121] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]	MGC105530; LRRGT00195	MGC105530; LRRGT00195
Rattus norvegicus	RefSeq	GI_13591986-S	ILMN_298121	MIPEP	NM_031052.1	NM_031052.1		81684	13591986	NM_031052.1	Mipep	NP_112314.1	ILMN_1349348	0001500162	S	2017	AAGGAGTGCTTCCTACAGGATCCCTTTAACAGGGCCGCCGGGGAGCGCTA	15	+	39965337-39965372:39968971-39968984	15p12	Rattus norvegicus mitochondrial intermediate peptidase (Mipep), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649058-S	ILMN_291534	KIF12	XM_001058042.1	XM_001058042.1		313254	109476569	XM_001058042.1	Kif12	XP_001058042.1	ILMN_1373203	0003190167	S	1926	CCCCAAGACTGGAAACCCTCACACACCAGATCAACAGCTCCCTGAACCCC				5q24	PREDICTED: Rattus norvegicus kinesin family member 12 (Kif12), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090398-S	ILMN_280769	WIPI2	NM_001007615.1	NM_001007615.1		288498	56090398	NM_001007615.1	Wipi2	NP_001007616.1	ILMN_1359685	0005290114	S	1460	AGGATGAAGCCAGCGCTCTACGCCTGGATGAAGATAGTGAACATCCTCCC	12	-	12306765-12306814	12p11	Rattus norvegicus WD repeat domain, phosphoinositide interacting 2 (Wipi2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC94226	MGC94226
Rattus norvegicus	RefSeq	GI_62649825-S	ILMN_49516	EXTL1_PREDICTED	XM_233547.4	XM_233547.4		313610	109475643	XM_233547.4	Extl1_predicted	XP_233547.4	ILMN_1354413	0001050471	S	1689	CCTGCCTAAAGCCCTGAGGAGCATAGCCGATGAGACTCCCACCTGTGTTG	5	-	153102241-153102290	5q36	PREDICTED: Rattus norvegicus exostoses (multiple)-like 1 (predicted) (Extl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657093-S	ILMN_65081	RGD1565533_PREDICTED	XM_573200.2	XM_573200.2		498004	109489065	XM_573200.2	RGD1565533_predicted	XP_573200.1	ILMN_1368613	0000360278	S	311	CGAACGCCCATCGAGGCCCTGCCAAGGTGGACTGCTGGAATGAGTATCTT	10	+	91046293-91046342	10q32.1	PREDICTED: Rattus norvegicus RGD1565533 (predicted) (RGD1565533_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506946-S	ILMN_283805	PAK3	NM_019210.1	NM_019210.1		29433	9506946	NM_019210.1	Pak3	NP_062083.1	ILMN_1373238	0006420484	S	1870	TTTGTAAGCCTGAACCGCAGCCCACACAGGCCAGCAATGTCGAAGTAGCC	X	-	34735046-34735095	Xq14	Rattus norvegicus p21 (CDKN1A)-activated kinase 3 (Pak3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	beta-PAK	beta-PAK
Rattus norvegicus	RefSeq	GI_62649329-S	ILMN_69075	TTC22_PREDICTED	XM_233266.3	XM_233266.3		298300	109475218	XM_233266.3	Ttc22_predicted	XP_233266.1	ILMN_1355947	0005270053	S	2282	GACTTTCTACCCCCGATGCCTGAGTGACTACCACTGGATTCCCAAGGGCC	5	+	127716657-127716706	5q34	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 22 (predicted) (Ttc22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34856135-S	ILMN_284380	RGD1563838_PREDICTED	XM_001053118.1	XM_001053118.1		361583	109462023	XM_001053118.1	RGD1563838_predicted	XP_001053118.1	ILMN_1356290	0005550450	S	1493	CTCAAGTTCAGGCAACAAAAGAAGAGAGTAGGAGGACCACTGTGTGTGGC				1q22	PREDICTED: Rattus norvegicus similar to leucine zipper protein 2 (predicted) (RGD1563838_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17939353-S	ILMN_302120	CHEK1	NM_080400.1	NM_080400.1		140583	17939353	NM_080400.1	Chek1	NP_536325.1	ILMN_1375030	0006660039	S	2184	CTGACTCGGCCCCCATGTTTTTAGATGACCCTGACTAAGAAGGGGATGGG	8	-	37954424-37954473	8q21	Rattus norvegicus CHK1 checkpoint homolog (S. pombe) (Chek1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence ISS]; A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence ISS]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657810-S	ILMN_49455	LOC304031	XM_221586.3	XM_221586.3		304031	62657810	XM_221586.3	LOC304031	XP_221586.3	ILMN_1366356	0000540164	S	901	GGACTTTCTCCCAAGACTTTACATTTGCTCCCACTGACCAGAAATGCAGC					PREDICTED: Rattus norvegicus similar to NOL1/NOP2/Sun domain family 3 (LOC304031), mRNA.					
Rattus norvegicus	RefSeq	GI_62650861-S	ILMN_58218	LOC366634	XM_345678.2	XM_345678.2		366634	62650861	XM_345678.2	LOC366634	XP_345679.2	ILMN_1369301	0000840162	S	864	CAACAGAGACAAGGAGGGTGGGCTATGCGTGTTGAGCCTTCCTCACATGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210409E12 (LOC366634), mRNA.					
Rattus norvegicus	RefSeq	GI_62657032	ILMN_267775	LOC497995	NM_001025135.1	NM_001025135.1		497995	68341948	NM_001025135.1	LOC497995	NP_001020306.1	ILMN_1650416	0005720066	S	155	ATGGCCTAGAGGGTGGCAGTGGAGCCGTGAACTACCGTGTTAGATGGTGC	10	-	88536557-88536606	10q32.1	Rattus norvegicus high sulfur protein B2F (LOC497995), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62662769-S	ILMN_60740	PURG_PREDICTED	XM_341448.2	XM_341448.2		361162	62662769	XM_341448.2	Purg_predicted	XP_341449.2	ILMN_1359623	0002940373	S	1041	CCGGCGGGCCAGTGGTGAAGAACAAGGATGCCTGGACTAGCGTGAAATTG				16q12.3	PREDICTED: Rattus norvegicus purine-rich element binding protein G (predicted) (Purg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34876373-S	ILMN_291609	TADA3L_PREDICTED	XM_001062309.1	XM_001062309.1		291150	109505986	XM_001062309.1	Tada3l_predicted	XP_001062309.1	ILMN_1373048	0000670050	S	567	TCCCCCACTAGGGAAACATTACTCCCAACGCTGGTCCCAGGAGGATCTGC				17q11	PREDICTED: Rattus norvegicus transcriptional adaptor 3 (NGG1 homolog, yeast)-like (predicted) (Tada3l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424279-S	ILMN_265149	PDE5A	NM_133584.1	NM_133584.1		171115	19424279	NM_133584.1	Pde5a	NP_598268.1	ILMN_1367350	0000770687	S	3306	TAGGAATCGTTCTCGGAAGTGGGTTAGGGGCGAACTGAATGTGTCCTGGG	2	+	219550819-219550868	2q42	Rattus norvegicus phosphodiesterase 5A, cGMP-specific (Pde5a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of cyclic GMP, guanosine 3',5'-phosphate [goid 46069] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of cyclic GMP, guanosine 3',5'-phosphate [goid 46069] [evidence ISS]	Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence IEA]; Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence ISS]; Interacting selectively with cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate) [goid 30553] [evidence IEA]; Interacting selectively with cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate) [goid 30553] [evidence ISS]; Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate [goid 47555] [evidence TAS]; Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate [goid 47555] [evidence IDA]	PDE5A2	PDE5A2
Rattus norvegicus	RefSeq	GI_6981007-S	ILMN_278649	HAS2	NM_013153.1	NM_013153.1		25694	6981007	NM_013153.1	Has2	NP_037285.1	ILMN_1370907	0000460278	S	3721	CAGTCCCATTAGACATGCGCTCAGATCCCAAGAATAGCTGCACAGAAGCC	7	-	93230538-93230587	7q32	Rattus norvegicus hyaluronan synthase 2 (Has2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: UDP-D-glucuronate + UDP-N-acetyl-D-glucosamine = [beta-N-acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)](n) + 2n UDP [goid 50501] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718504-S	ILMN_65057	LOC363413	XM_343739.2	XM_343739.2		363413	62718504	XM_343739.2	LOC363413	XP_343740.2	ILMN_1361215	0001230204	S	7	CTTGATTTAGCCCGAGTTGTCCTGAAATTCTCTGTGCCGACAAGGCCGGC					PREDICTED: Rattus norvegicus similar to MIC2 like 1 (LOC363413), mRNA.					
Rattus norvegicus	RefSeq	GI_62651272	ILMN_276855	RGD1560608_PREDICTED	XM_001071725.1	XM_001071725.1		500724	109480014	XM_001071725.1	RGD1560608_predicted	XP_001071725.1	ILMN_1649830	0004570725	S	528	CGGCCCCTGCCTTTGTGCTCCATGGCCCAAATCTGGAATACACCCCTCTT				6q32	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560608_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658526-S	ILMN_55479	LOC288515	XM_221956.3	XM_221956.3		288515	62658526	XM_221956.3	LOC288515	XP_221956.3	ILMN_1364727	0003830309	S	3167	GGAAGAGACTGGTGCTGTGACTCCAGAAGGGATGCTTGAGGGTACCAGGG				12q11	PREDICTED: Rattus norvegicus similar to FLJ23471 protein (predicted) (LOC288515), mRNA.					
Rattus norvegicus	RefSeq	GI_47577152-S	ILMN_298929	OLR750	NM_001000366.1	NM_001000366.1		296003	47577152	NM_001000366.1	Olr750	NP_001000366.1	ILMN_1355668	0005420605	S	690	GGATGGGGCATCCAAAGCTCTCTCTACTTGTACTGCCCACATCATAGTGG	3	-	96848171-96848220	3q34	Rattus norvegicus olfactory receptor 750 (Olr750), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr750	Olr750
Rattus norvegicus	RefSeq	GI_25742588-S	ILMN_282802	TPBPA	NM_172073.1	NM_172073.1		64509	25742588	NM_172073.1	Tpbpa	NP_742070.1	ILMN_1371175	0003710041	S	568	GGAAGCAAAAACAGCAGGGGCCTCCCCAACTCAGTAGCCAGTCCCTGACA	17	+	9486823-9486872	17p14	Rattus norvegicus trophoblast specific protein alpha (Tpbpa), mRNA.		The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence NAS]	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	Tpbp	Tpbp
Rattus norvegicus	RefSeq	GI_8393885-S	ILMN_300439	SLC22A6	NM_017224.1	NM_017224.1		29509	8393885	NM_017224.1	Slc22a6	NP_058920.1	ILMN_1372507	0000870279	S	2013	GGAGGCTGCCATTCAGAGAAATCCCTCCCCAAAGGTCATGTCAGTAGACC	1	+	211302206-211302255	1q43	Rattus norvegicus solute carrier family 22 (organic anion transporter), member 6 (Slc22a6), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methotrexate stimulus. Methotrexate is 4-amino-10-methylformic acid, a folic acid analogue that is a potent competitive inhibitor of dihydrofolate reductase [goid 31427] [evidence IEP]; The directed, sodium-independent, movement of organic anions into, out of, within or between cells [goid 43252] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence ISS]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other, in a sodium independent manner [goid 15347] [evidence IDA]	Roat1; MGC124962; Paht; Oat1; Orctl1	Roat1; MGC124962; Paht; Oat1; Orctl1
Rattus norvegicus	RefSeq	GI_11968069-S	ILMN_293315	PPT1	NM_022502.1	NM_022502.1		29411	11968069	NM_022502.1	Ppt1	NP_071947.1	ILMN_1374027	0003870168	S	1854	CCCTACGTCCTATTTGCCAGCATGCGTCCAACTGCTACTGACTGGGTTCA	5	+	142173978-142174027	5q36	Rattus norvegicus palmitoyl-protein thioesterase 1 (Ppt1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [pmid 8895569] [evidence ISS]	The removal of palymitoyl groups from a lipoprotein [goid 2084] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion [goid 7042] [evidence ISS]; Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion [goid 7042] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence ISS]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes [goid 31579] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes [goid 31579] [evidence ISS]; Any process that modulates the activity of the enzyme phospholipase A2 [goid 32429] [evidence ISS]; Any process that modulates the activity of the enzyme phospholipase A2 [goid 32429] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 44257] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 44257] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells [goid 44265] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport [goid 48260] [evidence ISS]; Any process that activates, maintains or increases the rate of pinocytosis. Pinocytosis is the process whereby cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes [goid 48549] [evidence ISS]; The directed movement of a cofactor into, out of, within or between cells. A cofactor is a substance that is required for the activity of an enzyme or other protein [goid 51181] [evidence ISS]; The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 51186] [evidence ISS]; The removal of palymitoyl groups from a lipoprotein [goid 2084] [pmid 8895569] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [pmid 8895569] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [pmid 8895569] [evidence ISS]	Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence ISS]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence ISS]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence ISS]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence ISS]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [pmid 8895569] [evidence ISS]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence ISS]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence ISS]	Ppt	Ppt
Rattus norvegicus	RefSeq	GI_62667383-S	ILMN_59241	LOC317588	XM_229142.3	XM_229142.3		317588	62667383	XM_229142.3	LOC317588	XP_229142.3	ILMN_1352491	0004730152	S	2102	GCTGCCACCGAGGAGAGCTCATAAGCAACATCCCACAAGCAAACATGAGC					PREDICTED: Rattus norvegicus similar to Ac1-163 (LOC317588), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656797	ILMN_69090	LOC501708	XM_577113.1	XM_577113.1		501708	62656797	XM_577113.1	LOC501708	XP_577113.1	ILMN_1650191	0004050114	S	4876	CTCCACAGAGCAGCCTCAGGACAGATGGGGGACATCAAGGAGGCCCATTT					PREDICTED: Rattus norvegicus similar to flocculin-like protein (LOC501708), mRNA.					
Rattus norvegicus	RefSeq	GI_62641385-S	ILMN_287083	RGD1563285_PREDICTED	XM_001080526.1	XM_001080526.1		499273	109462997	XM_001080526.1	RGD1563285_predicted	XP_001080526.1	ILMN_1374299	0004210504	S	590	GAGTGGGCGAAGGAGCAGATGAAACAACACAGAGACCGGATGGTGAGAGG				1q37	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700022C21 (predicted) (RGD1563285_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41386748-S	ILMN_292454	NS5ATP9	NM_201418.1	NM_201418.1		300795	41386748	NM_201418.1	Ns5atp9	NP_958821.1	ILMN_1359510	0004760180	S	4	GTTCGGACCAAAGCAAACTACGTCCCAGGAGCCTACAGAAAAGTGGTGGC	8	+	70159286-70159328:70159592-70159598	8q24	Rattus norvegicus NS5A (hepatitis C virus) transactivated protein 9 (Ns5atp9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_58865525-A	ILMN_286955	TARDBP	NM_001011979.1	NM_001011979.1		298648	58865525	NM_001011979.1	Tardbp	NP_001011979.1	ILMN_1376454	0003520215	S	1126	TCTACATGCTTTCTCATCCAAGAATTCGTCATCACGCTGCACAGGCTGCG	5	-	165699518-165699567	5q36	Rattus norvegicus TAR DNA binding protein (Tardbp), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649079-S	ILMN_56116	LOC313200	XM_232942.3	XM_232942.3		313200	62649079	XM_232942.3	LOC313200	XP_232942.3	ILMN_1368185	0003450050	S	1761	GAGGGCTGGTGGAGGCTGCGGTGCAGGAAAGAACTGACTAATGGGCAATT				5q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610207I16 (predicted) (LOC313200), mRNA.					
Rattus norvegicus	RefSeq	GI_47058949-S	ILMN_285539	AGPAT1	NM_212458.1	NM_212458.1		406165	47058949	NM_212458.1	Agpat1	NP_997623.1	ILMN_1362181	0000360059	S	1970	CATTCCTCAAACCCAGGAGGTAGACTGGGGGAAGAAGGAACGGGCGGGAT	20	-	4237869-4237918	20p12	Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) (Agpat1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate [goid 3841] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: phospholipid + 1,2-diacylglycerol = lysophospholipid + triacylglycerol [goid 46027] [evidence ISS]	MGC94573	MGC94573
Rattus norvegicus	RefSeq	GI_62654810-S	ILMN_53313	LOC501117	XM_576535.1	XM_576535.1		501117	62654810	XM_576535.1	LOC501117	XP_576535.1	ILMN_1368864	0000770670	S	819	CTCTGTGTGGTAGAAAACATGGCTGTACTCCACAAGAATGCACTGGATAC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC501117), mRNA.					
Rattus norvegicus	RefSeq	GI_62655256-S	ILMN_52641	RGD1560587_PREDICTED	XM_244186.4	XM_244186.4		316539	109486268	XM_244186.4	RGD1560587_predicted	XP_244186.3	ILMN_1364149	0006550056	S	5199	AACCTGAGTGGCTGCCTTGCTTATTCCGAGCGATGGTTACAGAAGCTGTG	9	-	76677868-76677917	9q33	PREDICTED: Rattus norvegicus similar to Eph receptor A4 (predicted) (RGD1560587_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653170-S	ILMN_269721	LOC299828	XM_001055307.1	XM_001055307.1		299828	109482061	XM_001055307.1	LOC299828	XP_001055307.1	ILMN_1373186	0003130102	S	923	ACAAGACGTATGCCAGATACGCTCACAGGGACTTTCAGAACCGTGGTCGC					PREDICTED: Rattus norvegicus similar to Ku70-binding protein 3 (LOC299828), mRNA.					
Rattus norvegicus	RefSeq	GI_62643103-S	ILMN_54343	MYO10_PREDICTED	XM_226874.3	XM_226874.3		310178	62643103	XM_226874.3	Myo10_predicted	XP_226874.3	ILMN_1364649	0006940369	S	6957	TCCTGAATACGAGGGAAGCTGAGGGAGTGGGGATGGGAGACAGAGTGGAG				2q22	PREDICTED: Rattus norvegicus myosin X (predicted) (Myo10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647781-S	ILMN_272180	RGD1560871_PREDICTED	XM_001072622.1	XM_001072622.1		362398	109473841	XM_001072622.1	RGD1560871_predicted	XP_001072622.1	ILMN_1373007	0003140358	S	6175	TGAGGGAGAGGTGAGATACCCAAGGCTAGGCCACATAAGTCTCAGCCGGG				4q34	PREDICTED: Rattus norvegicus similar to plexin 1 (predicted) (RGD1560871_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643227-S	ILMN_60421	PDE7A	XM_215540.4	XM_215540.4		81744	109464625	XM_215540.4	Pde7a	XP_215540.3	ILMN_1353897	0006760047	S	2700	GTGCGTGAGAGGTATGTTGTGTACGGCTGTATGGGTGTGTGTTTGCGCGC	2	-	104340508-104340557	2q24	PREDICTED: Rattus norvegicus phosphodiesterase 7A, transcript variant 2 (Pde7a), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IEP]	Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence TAS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645473-S	ILMN_60793	LOC362174	XM_347034.2	XM_347034.2		362174	62645473	XM_347034.2	LOC362174	XP_347035.2	ILMN_1352008	0006840129	S	705	TCACCTGACCCGAACGCGGCGCTGCCTCTAGGCCTCGGTTACTCACATCA					PREDICTED: Rattus norvegicus similar to GPI-anchored membrane protein 1 (LOC362174), mRNA.					
Rattus norvegicus	RefSeq	GI_62654858-S	ILMN_55774	LOC316207	XM_236901.3	XM_236901.3		316207	62654858	XM_236901.3	LOC316207	XP_236901.3	ILMN_1354457	0003780377	S	778	ATGGACTCGGGTCTTCCAAGTCAAACGCCCAAGAGGTGGAGACCAGGGAC				9q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B430306N03 gene (predicted) (LOC316207), mRNA.					
Rattus norvegicus	RefSeq	GI_62646485-S	ILMN_65147	LOC311692	XM_230941.3	XM_230941.3		311692	62646485	XM_230941.3	LOC311692	XP_230941.3	ILMN_1374883	0000360193	S	1446	AATAACTGTGGTTGCGCCCCTTCATCCGGTGTTGAGGAGTCGGCGGGAGA				3q43	PREDICTED: Rattus norvegicus similar to Protein C20orf177 (predicted) (LOC311692), mRNA.					
Rattus norvegicus	RefSeq	GI_62647355-S	ILMN_63119	LOC500150	XM_575502.1	XM_575502.1		500150	62647355	XM_575502.1	LOC500150	XP_575502.1	ILMN_1352451	0003170112	S	1428	GGCGGCTGGGAGGTGGTGTGTGCTGAATGTCAACATGTCTAGTGATGGGC				4q24	PREDICTED: Rattus norvegicus similar to tigger transposable element derived 2 (LOC500150), mRNA.					
Rattus norvegicus	RefSeq	GI_62645359-S	ILMN_54892	LOC311171	XM_230055.4	XM_230055.4		311171	109468389	XM_230055.4	LOC311171	XP_230055.3	ILMN_1367860	0002360026	S	1269	TCACTCACTGAAGAGAGCTTCAAGGCCTGCCACCTGACTCTGACCCTGGA	3	-	68422713-68422762	3q24	PREDICTED: Rattus norvegicus similar to FLJ45686 protein (LOC311171), mRNA.					
Rattus norvegicus	RefSeq	GI_62638387-S	ILMN_69838	RGD1306801_PREDICTED	XM_341738.3	XM_341738.3		361459	109457661	XM_341738.3	RGD1306801_predicted	XP_341739.1	ILMN_1349527	0001170465	S	2337	TCGGTGGCTACATTCTGAAGAAAAATTGTGGCTGATGAGCTGGGAAACCA	1	+	24389707-24389756	1p11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC34646 (predicted) (RGD1306801_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659773-S	ILMN_68562	MNDA_PREDICTED	XM_573516.1	XM_573516.1		304988	62659773	XM_573516.1	Mnda_predicted	XP_573516.1	ILMN_2039145	0002760669	I	1	AGTGATCACAGTGTTTAAGGGAAGTGAAGAGGTTTCACAATCCTGAGATA				13q24	PREDICTED: Rattus norvegicus myeloid cell nuclear differentiation antigen (predicted) (Mnda_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542367-S	ILMN_66990	CDC42	NM_171994.3	NM_171994.3		64465	61889111	NM_171994.3	Cdc42	NP_741991.3	ILMN_1371930	0004280639	S	630	GCAGGTGTGTGCTGCTATGAACGCATCTCCAGAGCCCTTTCTGCACAGCT	5	-	156106355-156106404	5q36	Rattus norvegicus cell division cycle 42 homolog (S. cerevisiae) (Cdc42), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 15537656] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [pmid 15537656] [evidence IDA]	The directed movement of the nucleus [goid 7097] [evidence ISS]; The directed movement of the nucleus [goid 7097] [evidence IEA]; The specification and formation of anisotropic intracellular organization or cell growth patterns [goid 30010] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of pseudopodia [goid 31274] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein complex assembly [goid 31333] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phosphoinositide 3-kinase activity [goid 43552] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phosphoinositide 3-kinase activity [goid 43552] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IDA]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence ISS]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [pmid 15537656] [evidence TAS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [pmid 15537656] [evidence TAS]	Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15537656] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [pmid 15537656] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62650639-S	ILMN_69779	RGD1565306_PREDICTED	XM_576023.2	XM_576023.2		500645	109478158	XM_576023.2	RGD1565306_predicted	XP_576023.1	ILMN_1362194	0002970520	S	540	TCCTGCCAGTGTGAAGACAGATGGACTGCTGCGACACAACCACCTACACA	6	+	59002274-59002323	6q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1565306_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642477-S	ILMN_66208	LOC499372	XM_574687.1	XM_574687.1		499372	62642477	XM_574687.1	LOC499372	XP_574687.1	ILMN_1350540	0004810110	S	822	CAGACTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTGGACAGATGAC					PREDICTED: Rattus norvegicus similar to ORF1 (LOC499372), mRNA.					
Rattus norvegicus	RefSeq	GI_62660859-S	ILMN_59042	LOC305552	XM_223660.3	XM_223660.3		305552	62660859	XM_223660.3	LOC305552	XP_223660.3	ILMN_1350730	0005670685	S	2582	GAGGACCCAGATTCAATTCCCACCACCCACATGGTGGCTTATGACTGTCC				14q22	PREDICTED: Rattus norvegicus hypothetical LOC305552 (predicted) (LOC305552), mRNA.					
Rattus norvegicus	RefSeq	GI_62660650-S	ILMN_65528	RGD1311900_PREDICTED	XM_223533.4	XM_223533.4		305449	109499909	XM_223533.4	RGD1311900_predicted	XP_223533.3	ILMN_1359900	0002120500	S	1460	CTGCAGCATCCAGCACAGACTCTCAAGGAGGAGTAGCTGAGCCGTCCTGC	14	+	81748789-81748824:81748825-81748838	14q21	PREDICTED: Rattus norvegicus similar to tetracycline transporter-like protein (predicted) (RGD1311900_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638596-S	ILMN_57365	LOC502231	XM_577694.1	XM_577694.1		502231	62638596	XM_577694.1	LOC502231	XP_577694.1	ILMN_1365459	0003190253	S	246	GAGTCTGTGGAGAGGACAGTGTGTGTGGAGAGGGCAGTGTCTGTGGAGAG					PREDICTED: Rattus norvegicus similar to mature parasite-infected erythrocyte surface antigen like precursor (2N179) (LOC502231), mRNA.					
Rattus norvegicus	RefSeq	GI_62666433-S	ILMN_271488	RGD1566035_PREDICTED	XM_001064345.1	XM_001064345.1		363438	109512537	XM_001064345.1	RGD1566035_predicted	XP_001064345.1	ILMN_1357789	0006040021	S	409	CGGCGTGGAGCTTTTAACGGCCAGCAACGTTTGCCTCTGGAGAAGTACCA				Xq11	PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase 4a1 (predicted) (RGD1566035_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645104-S	ILMN_276175	RBM43	NM_001037649.1	NM_001037649.1		311020	83320085	NM_001037649.1	Rbm43	NP_001032738.1	ILMN_1363384	0000050053	S	875	ACATCACTACCCTTTGTCTACAAGATGCCCGGGATGGGTCTTACCCTGGC	3	-	32939274-32939323	3q12	Rattus norvegicus RNA binding motif protein 43 (Rbm43), mRNA.			Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC124672	MGC124672
Rattus norvegicus	RefSeq	GI_62664208-S	ILMN_274072	RGD1310251	NM_001024240.1	NM_001024240.1		291675	66730436	NM_001024240.1	RGD1310251	NP_001019411.1	ILMN_1355904	0006380592	S	528	CCTGCTCACAGGAGATCCCGGCTCAGAGAGAAGAGCTTTAGTCCAAGCTG	18	-	28262040-28262049:28262050-28262089	18p11	Rattus norvegicus similar to RIKEN cDNA 2010001M09 (RGD1310251), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]		MGC112758	MGC112758
Rattus norvegicus	RefSeq	GI_62078978-S	ILMN_270914	AMZ2	NM_001014121.1	NM_001014121.1		360650	62078978	NM_001014121.1	Amz2	NP_001014143.1	ILMN_1358753	0006590064	S	2655	TTTTAATGCTGGAGCAGGGTGGGGAGGTGGGGGTAGGGCTGAAGGACAAC	10	-	98889537-98889586	10q32.1	Rattus norvegicus archaelysin family metallopeptidase 2 (Amz2), mRNA.			Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Amz2	Amz2
Rattus norvegicus	RefSeq	GI_27229307-S	ILMN_283781	VPS24	NM_172331.1	NM_172331.1		282834	27229307	NM_172331.1	Vps24	NP_758834.1	ILMN_1375233	0003780170	S	700	CCAGTTGGGGTCTCAGTTCTCTGGTGTTCTCTTCTAGGTGTGTATGCAGC	4	+	104857765-104857814	4q33	Rattus norvegicus vacuolar protein sorting 24 homolog (S. cerevisiae) (Vps24), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the volume of an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis [goid 51036] [evidence IMP]	Interacting selectively with phosphatidylinositol-4,5-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 5546] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62641720-S	ILMN_54695	ANLN_PREDICTED	XM_219687.3	XM_219687.3		293661	62641720	XM_219687.3	Anln_predicted	XP_219687.2	ILMN_1368725	0000630541	S	858	CCTTGAACCCAGGGAACTTCAGGACCGTGGAGAGACTTCGCTAGCTGTGT					PREDICTED: Rattus norvegicus anillin, actin binding protein (scraps homolog, Drosophila) (predicted) (Anln_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078742-S	ILMN_295187	LOC306766	NM_001014007.1	NM_001014007.1		306766	62078742	NM_001014007.1	LOC306766	NP_001014029.1	ILMN_1354762	0006900292	S	1944	GCCGTGGCCTCACTTTGTAGCCGTGGCTAGCCTGAAACTCAGTCAGAAGA	17	+	16124740-16124789	17p14	Rattus norvegicus hypothetical LOC306766 (LOC306766), mRNA.				MGC94694; Aa2-141	MGC94694; Aa2-141
Rattus norvegicus	RefSeq	GI_27682830-S	ILMN_295187	LOC306766	NM_001014007.1	NM_001014007.1		306766	62078742	NM_001014007.1	LOC306766	NP_001014029.1	ILMN_2039230	0006560402	S	1028	CTATGGAAGTGATGCGTGCCCAGGCCACACGAGCAGGTGAAGATCCAGCA	17	+	16123824-16123873	17p14	Rattus norvegicus hypothetical LOC306766 (LOC306766), mRNA.				MGC94694; Aa2-141	MGC94694; Aa2-141
Rattus norvegicus	RefSeq	GI_62652433-S	ILMN_280583	RGD1565672_PREDICTED	XM_001064571.1	XM_001064571.1		500870	109482188	XM_001064571.1	RGD1565672_predicted	XP_001064571.1	ILMN_1356013	0005550524	S	2652	GGTGACAGAAACCTTGAAGAGACACCACATCACCGAGGCCCATGAGAGCT				7q32	PREDICTED: Rattus norvegicus similar to MDM2 Binding protein (predicted), transcript variant 1 (RGD1565672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657197-S	ILMN_48641	LOC360644	XM_346903.2	XM_346903.2		360644	62657197	XM_346903.2	LOC360644	XP_346904.2	ILMN_1368192	0001400242	S	593	ATGCTTGGGAACTCCGGCTGAGGAGAGCAGGGTTGAGACTTCTGGATTCC					PREDICTED: Rattus norvegicus hypothetical LOC360644 (LOC360644), mRNA.					
Rattus norvegicus	RefSeq	GI_62650310-S	ILMN_264284	RGD1560224_PREDICTED	XM_001062614.1	XM_001062614.1		500608	109478931	XM_001062614.1	RGD1560224_predicted	XP_001062614.1	ILMN_1368417	0006040546	S	810	ATTTGCTTCACGCGCTGCAGGAGAGGGTCCTGAAATGGCCACGCCAAGGA				6q11	PREDICTED: Rattus norvegicus RGD1560224 (predicted) (RGD1560224_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660867-S	ILMN_59472	LOC360987	XM_346932.2	XM_346932.2		360987	62660867	XM_346932.2	LOC360987	XP_346933.2	ILMN_1355699	0002480133	S	711	GGTCGGCAGGACAATCCATCTGTGGTTAGTGGCTGTGGCCCTTCCAACAC					PREDICTED: Rattus norvegicus hypothetical LOC360987 (LOC360987), mRNA.					
Rattus norvegicus	RefSeq	GI_62660996	ILMN_299454	PLAU	NM_013085.2	NM_013085.2		25619	31377490	NM_013085.2	Plau	NP_037217.2	ILMN_1650232	0003520133	S	1550	CCACCAGGGTGAACCCCAATAGTATTACCCTCAGACACAGGTCTGGGTGC	15	-	3680500-3680549	15p16	Rattus norvegicus plasminogen activator, urokinase (Plau), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEP]; The orderly movement of smooth muscle cells from one site to another, often during the development of a multicellular organism [goid 14909] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IMP]; The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage [goid 43403] [evidence IMP]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC124931; UPAM	MGC124931; UPAM
Rattus norvegicus	RefSeq	GI_27545353-S	ILMN_279598	KLRB1B	NM_173292.1	NM_173292.1		25192	27545353	NM_173292.1	Klrb1b	NP_775414.1	ILMN_1364370	0002320273	S	1405	AGCAGACCCTGGGCCAATGCTGGACCTTGGTGCTAGGCTTCTCAGCTCTA	4	-	165698892-165698941	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily B member 1B (Klrb1b), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that stops, prevents, or reduces the rate of natural killer mediated cytotoxicity [goid 45953] [evidence IEA]; Any process that stops, prevents, or reduces the rate of natural killer mediated cytotoxicity [goid 45953] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; A receptor found on the surface of natural killer cells which binds Class I MHC antigens and is required for activation of NK activity. It belongs to the Ly49i family [goid 45233] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	Nkr-p1b; Nkrp1b	Nkr-p1b; Nkrp1b
Rattus norvegicus	RefSeq	GI_62657134-S	ILMN_283981	LOC303566	NM_001017988.1	NM_001017988.1		303566	63079710	NM_001017988.1	LOC303566	NP_001017988.1	ILMN_1366610	0006860129	S	2189	GTGCGCTGTGTGTCTTGACTACTTCCTCTGGCATGGGCATCCTGGAAACC	10	+	91347102-91347151	10q32.1	Rattus norvegicus E2F1-inducible gene (LOC303566), mRNA.					
Rattus norvegicus	RefSeq	GI_62643355-S	ILMN_295755	RGD1307100	NM_001037184.1	NM_001037184.1		294978	81295330	NM_001037184.1	RGD1307100	NP_001032261.1	ILMN_1369614	0002340286	S	894	GGCTTCAGAGAGGAGTGATGGACCCACTGGATAAGGTGCTATCCGTTCTC	2	+	123571245-123571294	2q25	Rattus norvegicus similar to RIKEN cDNA D630029K19 (RGD1307100), mRNA.				MGC112866	MGC112866
Rattus norvegicus	RefSeq	GI_47576484-S	ILMN_266617	OLR160	NM_001000738.1	NM_001000738.1		404999	47576484	NM_001000738.1	Olr160	NP_001000738.1	ILMN_1373799	0007050403	S	782	GTTTCTTTTCCCACCGTTTTGGGGGGCACACAATCCCTCCATCTTGCCTC	1	+	162310508-162310557	1q33	Rattus norvegicus olfactory receptor 160 (Olr160), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr160	Olr160
Rattus norvegicus	RefSeq	GI_18959271-S	ILMN_296522	KCNQ2	NM_133322.1	NM_133322.1		170848	18959271	NM_133322.1	Kcnq2	NP_579856.1	ILMN_1361043	0001570195	S	3805	TAGTAGGTCCCTGGTCTGTGGCCCCTGGGTGTTTGAGGAATTGGGAACAC	3	-	170228241-170228290	3q43	Rattus norvegicus potassium voltage-gated channel, subfamily Q, member 2 (Kcnq2), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648288-S	ILMN_282001	ART4_PREDICTED	XM_001072607.1	XM_001072607.1		312806	109474419	XM_001072607.1	Art4_predicted	XP_001072607.1	ILMN_1366402	0002320528	S	1034	GGTGTCTATGTCGGCTACTTTACCCAATAGCTGTCACCAAGACCAGGAGG				4q43	PREDICTED: Rattus norvegicus ADP-ribosyltransferase 4 (predicted) (Art4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576150-S	ILMN_289099	OLR1375	NM_214829.1	NM_214829.1		287088	47576150	NM_214829.1	Olr1375	NP_999994.1	ILMN_1349104	0002260373	S	876	GAGGAACAGGGACCTGAAGGAGGCCCTAAGAAAACTGGTCCATGGAAGAA	10	-	12520202-12520251	10q12	Rattus norvegicus olfactory receptor 1375 (Olr1375), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1375	Olr1375
Rattus norvegicus	RefSeq	GI_18677764-S	ILMN_283709	PALM	NM_130829.1	NM_130829.1		170673	18677764	NM_130829.1	Palm	NP_570842.1	ILMN_1357556	0004570132	S	2127	AGGCAGCAGTAGCCACTTTGGTCCCCAGAAGCACAACCTTGCACACAGGC	7	-	11399881-11399930	7q11	Rattus norvegicus paralemmin (Palm), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence ISS]	Interacting selectively with a D3 dopamine receptor [goid 31750] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644131-S	ILMN_283583	RGD1564584_PREDICTED	XR_008508.1	XR_008508.1		499685	109467347	XR_008508.1	RGD1564584_predicted		ILMN_1355349	0001570040	S	414	CGCCGACGAACCTACAGCGCTCATAACCTATCTATGAGCTCCTCTGCCAC				2q34	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (predicted) (RGD1564584_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882980-S	ILMN_54900	LOC291496	XM_225817.2	XM_225817.2		291496	34882980	XM_225817.2	LOC291496	XP_225817.2	ILMN_1355535	0004570440	S	308	CGCACATCTCGCAAGAGCCATGGTTGGCCAAGCGGTGGAGCATAAATTTG					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC291496), mRNA.					
Rattus norvegicus	RefSeq	GI_18959229-S	ILMN_273451	SLC6A20	NM_133296.1	NM_133296.1		113918	18959229	NM_133296.1	Slc6a20	NP_579830.1	ILMN_1366572	0002350279	S	1885	GGAGGCTCTTCCCCAGTGGCCTAAGAATGGACCTCCCAAAGACCGAAGTC	8	-	128412095-128412121:128412122-128412144	8q32	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter), member 20 (Slc6a20), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IDA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence ISS]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IDA]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	rB21a	rB21a
Rattus norvegicus	RefSeq	GI_62660207-S	ILMN_54298	RGD1308523_PREDICTED	XM_223231.4	XM_223231.4		289502	109499528	XM_223231.4	RGD1308523_predicted	XP_223231.4	ILMN_1349730	0003060750	S	3290	GCCAAGCCTGTTCATTCATCCAACTCGGCAAAAGATTCACAGTCTCCGTC	14	+	17026459-17026492:17028441-17028456	14p22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932413O14 gene (predicted) (RGD1308523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14249123-S	ILMN_69915	STAT1	NM_032612.2	NM_032612.2		25124	77695925	NM_032612.2	Stat1	NP_116001.2	ILMN_1372159	0006180019	S	2446	GCACAGAAAACCTGCTTCCCATGTCTCCAGAGGAGTTTGACGAGATGTCC	9	-	46460446-46460495	9q22	Rattus norvegicus signal transducer and activator of transcription 1 (Stat1), transcript variant alpha, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence TAS]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The flow of blood through the body of an animal, enabling the transport of O2 and nutrients to the tissues and the removal of waste products [goid 8015] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718443-S	ILMN_60433	LOC367381	XM_576810.1	XM_576810.1		367381	62718443	XM_576810.1	LOC367381	XP_576810.1	ILMN_1351994	0002510044	S	1863	CATAACTGGGCCTTACAGCCTGAAGCTGAGATCCCTAGAATCTTCTGTGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC367381), mRNA.					
Rattus norvegicus	RefSeq	GI_62656462-S	ILMN_67772	LOC363626	XM_577108.1	XM_577108.1		363626	62656462	XM_577108.1	LOC363626	XP_577108.1	ILMN_1360718	0002320722	S	280	GCTGCTTCTCGGGGACCTGGGGAGGGGCACGGGTGAATTATCACACAGGT					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC363626), mRNA.					
Rattus norvegicus	RefSeq	GI_47577302-S	ILMN_271722	OLR409	NM_001000827.1	NM_001000827.1		405116	47577302	NM_001000827.1	Olr409	NP_001000827.1	ILMN_1363502	0001170603	S	572	CAGATACATCCATCAATGAGCTGGTCATCCTTGTTGTAGGATCACTTGTC	3	+	16304353-16304402	3p11	Rattus norvegicus olfactory receptor 409 (Olr409), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr409	Olr409
Rattus norvegicus	RefSeq	GI_11560037-S	ILMN_62829	A4GALT	NM_022240.1	NM_022240.1		63888	11560037	NM_022240.1	A4galt	NP_071576.1	ILMN_1355285	0001400037	S	1419	GAGGTGGGGTCATTCTTGTGATCTAGCCCGTGAAGGTCCCAGATGCTGTG				7q34	Rattus norvegicus alpha 1,4-galactosyltransferase (A4galt), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the plasma membrane [goid 7009] [evidence ISS]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]	Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IDA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence ISS]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP-galactose = alpha-D-galactosyl-(1,4)-beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP [goid 50512] [evidence IEA]	Gb3	Gb3
Rattus norvegicus	RefSeq	GI_16758379-S	ILMN_269284	ECE1	NM_053596.1	NM_053596.1		94204	16758379	NM_053596.1	Ece1	NP_446048.1	ILMN_1358385	0002760437	S	4241	GGGTGCAAAAGCAGCATCCCGACCCCTGTCCCTCCAGAGATTTGAGAAGG	5	+	156737205-156737254	5q36	Rattus norvegicus endothelin converting enzyme 1 (Ece1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence IMP]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence IEA]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence ISS]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ece	Ece
Rattus norvegicus	RefSeq	GI_62666965-S	ILMN_284676	RGD1562090_PREDICTED	XR_007471.1	XR_007471.1		503437	109511795	XR_007471.1	RGD1562090_predicted		ILMN_1362351	0002650725	S	460	GCCAAGGCGACAGCCTGAGCTAGAGGAGGAGCACCTAAAGGACTATGTGA				Xq22	PREDICTED: Rattus norvegicus similar to cDNA sequence BC023488 (predicted) (RGD1562090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642332-S	ILMN_59093	CRTAC1	XM_574670.2	XM_574670.2		171438	109460127	XM_574670.2	Crtac1	XP_574670.2	ILMN_2040211	0002100554	S	1684	ATGGCAAGATGCTGAGCCGAAGTGTGGCCAACAGGGAGATGAACTCGGTG	1	+	248567671-248567720	1q54	PREDICTED: Rattus norvegicus cartilage acidic protein 1, transcript variant 2 (Crtac1), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653058-S	ILMN_54912	RGD1306433_PREDICTED	XM_343331.3	XM_343331.3		363001	109481303	XM_343331.3	RGD1306433_predicted	XP_343332.1	ILMN_1363645	0003450088	S	994	TGAAAGGCACTGTCTGTGTCCCGGGTTGCTTGGACCGTGCTGGGAATGAG	7	-	138218731-138218780	7q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930556P03 (predicted) (RGD1306433_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47087118-S	ILMN_296969	HSD17B8	NM_212529.1	NM_212529.1		361802	47087118	NM_212529.1	Hsd17b8	NP_997694.1	ILMN_1356874	0004210707	S	675	TTCCGTTGGGACACATGGGGGACCCTGAGGATGTAGCAGATGTGGTTGCG	20	+	4966197-4966226:4966419-4966438	20p12	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 8 (Hsd17b8), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence ISS]; The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 8210] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence ISS]; Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: testosterone + NAD+ = androst-4-ene-3,17-dione + NADH [goid 50327] [evidence ISS]; Catalysis of the reaction: testosterone + NAD+ = androst-4-ene-3,17-dione + NADH [goid 50327] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Fabgl; Ke6; RING2; MGC109594	Fabgl; Ke6; RING2; MGC109594
Rattus norvegicus	RefSeq	GI_62718016-S	ILMN_295389	LOC304035	XR_009478.1	XR_009478.1		304035	109518996	XR_009478.1	LOC304035		ILMN_1361380	0006220114	S	696	ACTGCCACTGGGGAGGCAACGTCCTGGGTCCTAAGTCTGTGACTCGCATT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC304035), mRNA.					
Rattus norvegicus	RefSeq	GI_48843728-S	ILMN_274104	RAI12	NM_001001718.1	NM_001001718.1		287446	48843728	NM_001001718.1	Rai12	NP_001001718.1	ILMN_1374248	0003360731	S	1245	AGGCTGTGTCTTGTGAGCCAAGGAGAAGCATCAAGCTGGGGCAGAAAGGG	10	-	56813574-56813623	10q24	Rattus norvegicus retinoic acid induced 12 (Rai12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650888	ILMN_264206	RAB15	NM_198749.2	NM_198749.2		299156	66955887	NM_198749.2	Rab15	NP_942044.1	ILMN_1651007	0006940164	S	940	GCACTGGCCGAGCTGGAGGAAGACGAAGGCAAAACTGAAGGCCCAGCAAA	6	-	99381338-99381387	6q24	Rattus norvegicus RAB15, member RAS oncogene family (Rab15), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence TAS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651519-S	ILMN_68046	LOC503081	XM_578601.1	XM_578601.1		503081	62651519	XM_578601.1	LOC503081	XP_578601.1	ILMN_1355531	0004010739	S	30	GGAACAGAGAAAGGCCCTGGGTCACATAAGAATATCGCTGCTGCAGGAGG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC503081), mRNA.					
Rattus norvegicus	RefSeq	GI_62660659-S	ILMN_65963	LOC305453	XM_240008.3	XM_240008.3		305453	62660659	XM_240008.3	LOC305453	XP_240008.3	ILMN_1369383	0005270132	S	2426	TGCCGGACGAGCGGAAGTGGGTCTTCGTGAGACGGTGGAGTCTTGCTTGA				14q21	PREDICTED: Rattus norvegicus similar to CG14998-PC, isoform C (LOC305453), mRNA.					
Rattus norvegicus	RefSeq	GI_62664292-S	ILMN_55406	NRG2	XM_344662.2	XM_344662.2		432361	62664292	XM_344662.2	Nrg2	XP_344663.2	ILMN_1350614	0006980136	S	3999	TTCACCCTCAGGTGCTACAGAATAGATGAGACCACACCCCAAGCTGAGCG				18p11	PREDICTED: Rattus norvegicus neuregulin 2 (Nrg2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IPI]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IPI]; Interacting selectively with the protein-tyrosine kinase receptor ErbB-3/HER3 [goid 43125] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648789-S	ILMN_270189	RGD1560696_PREDICTED	XM_001065615.1	XM_001065615.1		366352	109476328	XM_001065615.1	RGD1560696_predicted	XP_001065615.1	ILMN_1363950	0004560487	S	742	TGACCTCAAGTATAAGAAGCCAACCGCACTGCCCGCTCCCCAGTACATGA				5q21-q22	PREDICTED: Rattus norvegicus similar to Mob3b protein (predicted) (RGD1560696_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653694-S	ILMN_65861	CRABP1_MAPPED	XM_236253.3	XM_236253.3		25061	109483505	XM_236253.3	Crabp1_mapped	XP_236253.3	ILMN_1349215	0006400600	S	410	CTTCTTGAGGGGGATGGCCCCAAAACTTACTGGACCCGAGAGCTGGCCAA	8	+	58320776-58320825	8q24	PREDICTED: Rattus norvegicus cellular retinoic acid binding protein 1 (mapped) (Crabp1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_57164142-S	ILMN_295614	ACTR2	NM_001009268.1	NM_001009268.1		289820	57164142	NM_001009268.1	Actr2	NP_001009268.1	ILMN_1367256	0006040685	S	1229	CTCGGTGTGACTGTTCGATAAAATAGCAGGCTTGTCCCCATCACGCCTCT	14	-	100848432-100848461:100848462-100848481	14q22	Rattus norvegicus ARP2 actin-related protein 2 homolog (yeast) (Actr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC95085	MGC95085
Rattus norvegicus	RefSeq	GI_52138630-S	ILMN_273806	TOX4	NM_173324.2	NM_173324.2		286990	52138630	NM_173324.2	Tox4	NP_775446.2	ILMN_1359958	0005390563	S	2637	TCTCCTCTACTCCTAGAACCTGGGAGGCCAGTGGCAGGCTGGATCTCTGA	15	+	27743311-27743360	15p14	Rattus norvegicus TOX high mobility group box family member 4 (Tox4), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC93073	MGC93073
Rattus norvegicus	RefSeq	GI_62658574-S	ILMN_278852	COPS6_PREDICTED	XM_001066309.1	XM_001066309.1		304343	109496738	XM_001066309.1	Cops6_predicted	XP_001066309.1	ILMN_1360068	0003360114	S	1061	TCAGACAACTGTGCCACGGGACTGAGCACTTTCCCCTTAGAGAAACTCAC				12q11	PREDICTED: Rattus norvegicus COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana) (predicted) (Cops6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643487-S	ILMN_50001	LOC499623	XM_579989.1	XM_579989.1		499623	62643487	XM_579989.1	LOC499623	XP_579989.1	ILMN_1368804	0000940181	S	1353	GGTTCGTGGGCGGGGCCAAAGGGCAGAGAAAAGGGAGCGGGTTCTTTATT					PREDICTED: Rattus norvegicus LOC499623 (LOC499623), mRNA.					
Rattus norvegicus	RefSeq	GI_62656408-S	ILMN_270835	RGD1565523_PREDICTED	XM_001068848.1	XM_001068848.1		501688	109490583	XM_001068848.1	RGD1565523_predicted	XP_001068848.1	ILMN_1357459	0005910301	S	968	CCCAGACATCTACTTGGAAGGTGGCTTCAGTGTGGGGACGAGGAGACACT				10q21	PREDICTED: Rattus norvegicus similar to U7 snRNA-associated Sm-like protein Lsm11 (predicted) (RGD1565523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653913-S	ILMN_285726	BMP5_PREDICTED	XM_001059589.1	XM_001059589.1		315824	109485005	XM_001059589.1	Bmp5_predicted	XP_001059589.1	ILMN_1373140	0004280164	S	1710	CGCAATAAATCCAGCTCTCATCAGGACCCCTCCAGGATTCCCAGTGCTGG				8q24	PREDICTED: Rattus norvegicus bone morphogenetic protein 5 (predicted) (Bmp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741527-S	ILMN_299017	MGC94600	NM_001006989.1	NM_001006989.1		301013	55741527	NM_001006989.1	MGC94600	NP_001006990.1	ILMN_1367161	0005910039	S	1278	AGGGGTTATCTGGACCAAGGGTGGGGGTGGAGAGCCTGGATGGTAGCTCT	8	+	114071124-114071173	8q32	Rattus norvegicus scotin (MGC94600), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62663453-S	ILMN_55581	LOC364703	XM_344591.2	XM_344591.2		364703	62663453	XM_344591.2	LOC364703	XP_344592.2	ILMN_1349062	0002510068	S	736	GGATGTCTGCCCTCATAGGATGCCCTGGAAAGATGTCCCAGATCAGTAAG				17p12	PREDICTED: Rattus norvegicus similar to endoplasmic retuclum protein 29 (LOC364703), mRNA.					
Rattus norvegicus	RefSeq	GI_56605753-S	ILMN_270332	LRRC8D	NM_001008338.1	NM_001008338.1		305131	56605753	NM_001008338.1	Lrrc8d	NP_001008339.1	ILMN_1353075	0001340070	S	2844	GGAGTAGATAAGCCCTTTAAGCAGAACGCGGCGCACGGAGGCTGGTAGCA	14	-	5105133-5105182	14p22	Rattus norvegicus leucine rich repeat containing 8 family, member D (Lrrc8d), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93739; Lrrc5	MGC93739; Lrrc5
Rattus norvegicus	RefSeq	GI_62656492-S	ILMN_52474	TXNL5_PREDICTED	XM_213382.3	XM_213382.3		287474	109488486	XM_213382.3	Txnl5_predicted	XP_213382.1	ILMN_1355396	0004590286	S	377	CACCTCAAAAACTTGTGGAGTCTGAGTGCCGCCAATCCAACCTCGTAGAG	10	+	59101294-59101295:59101964-59102011	10q24	PREDICTED: Rattus norvegicus thioredoxin-like 5 (predicted) (Txnl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666155-S	ILMN_60846	BXDC1_PREDICTED	XM_215404.3	XM_215404.3		294436	109509606	XM_215404.3	Bxdc1_predicted	XP_215404.1	ILMN_1355968	0006220020	S	1052	GGTTTTCTGATAAGACTTTGTGGCTTATTTGGATGGGGTGAGGGTGTGAC	20	-	44388763-44388812	20q12	PREDICTED: Rattus norvegicus brix domain containing 1 (predicted) (Bxdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527285-S	ILMN_265959	ANKS3	NM_001009676.1	NM_001009676.1		302937	57527285	NM_001009676.1	Anks3	NP_001009676.1	ILMN_1371755	0001660204	S	2255	CTTTGGCTCAGACCAGGCAGGGCCGTATGGAGAGGCTAAGTCCTGCACAT	10	+	10752644-10752693	10q12	Rattus norvegicus ankyrin repeat and sterile alpha motif domain containing 3 (Anks3), mRNA.				MGC94228	MGC94228
Rattus norvegicus	RefSeq	GI_57526960-S	ILMN_292790	BRMS1	NM_001009605.1	NM_001009605.1		293668	57526960	NM_001009605.1	Brms1	NP_001009605.1	ILMN_1373791	0001740528	S	656	CAGTGCCACCCAGCAAGAGGAAGAAGGCACCACTCGTTTCTGGCCCATAC	1	+	207668027-207668068:207669101-207669108	1q43	Rattus norvegicus breast cancer metastasis-suppressor 1 (Brms1), mRNA.		Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95128	MGC95128
Rattus norvegicus	RefSeq	GI_62656024-S	ILMN_275251	MAML1_PREDICTED	XM_001071703.1	XM_001071703.1		303101	109490639	XM_001071703.1	Maml1_predicted	XP_001071703.1	ILMN_1354104	0006100176	S	3144	CACTGTGCTCAGGCTTACCCTGTGAGGACCATGGGCCAAGAGCTTCCCTT				10q22	PREDICTED: Rattus norvegicus mastermind like 1 (Drosophila) (predicted) (Maml1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393125-S	ILMN_273475	CHRNA5	NM_017078.1	NM_017078.1		25102	8393125	NM_017078.1	Chrna5	NP_058774.1	ILMN_2038816	0001010368	S	2654	GCAGTTGCACAGGTTCCCACCTCAAAATGGGATGCCATGACTCTGTCTGG	8	+	58566035-58566084	8q24	Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 5 (Chrna5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]	 [goid 4889] [evidence IMP];  [goid 4889] [evidence IEA];  [goid 4889] [evidence IMP]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62666832-S	ILMN_51296	LOC367788	XM_578981.1	XM_578981.1		367788	62666832	XM_578981.1	LOC367788	XP_578981.1	ILMN_1368409	0003130129	S	206	GCCAAAGGGCCCCAGCCACAAACTAAGCTGTTCTATTCCTACAATTGAAG				Xq21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC367788), mRNA.					
Rattus norvegicus	RefSeq	GI_62658831-S	ILMN_50461	LOC498177	XM_573393.1	XM_573393.1		498177	62658831	XM_573393.1	LOC498177	XP_573393.1	ILMN_1356317	0001240592	S	1013	CAAGCCTTTGCATCCACCAGAGAGTACACACCAAGGAGAGAAACCATCTC					PREDICTED: Rattus norvegicus similar to zinc finger protein ZFOC1 (LOC498177), mRNA.					
Rattus norvegicus	RefSeq	GI_62666260-S	ILMN_65633	RGD1310495_PREDICTED	XM_228270.4	XM_228270.4		309809	109509604	XM_228270.4	RGD1310495_predicted	XP_228270.4	ILMN_1353537	0000070397	S	1466	GAAGGAAGAGCGAGGACCAGAAGGCTTTGCCCACTAGTTCTAGGCTGTGA	20	-	44189594-44189594:44189595-44189643	20q12	PREDICTED: Rattus norvegicus similar to KIAA1919 protein (predicted) (RGD1310495_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641334-S	ILMN_58285	ZNF629_PREDICTED	XM_219354.3	XM_219354.3		308998	62641334	XM_219354.3	Znf629_predicted	XP_219354.3	ILMN_1352695	0002850113	S	3600	ACCAGGGTGGAGAGGCCGCAGATGGAAGCCAGTGTCAGTTTCTCCTCGTT				1q36	PREDICTED: Rattus norvegicus zinc finger protein 629 (predicted) (Znf629_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16258820-S	ILMN_270666	CHRNB4	NM_052806.1	NM_052806.1		25103	16258820	NM_052806.1	Chrnb4	NP_434693.1	ILMN_1359890	0006270731	S	2092	CCGTCCAAACCTCACTGTAAACTCCCAAGCTTTTCACGTGGCTGCACCAG	8	-	58586367-58586416	8q24	Rattus norvegicus cholinergic receptor, nicotinic, beta polypeptide 4 (Chrnb4), mRNA.	A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence TAS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence IEA]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence IEA]	Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650101-S	ILMN_63377	LRRC38_PREDICTED	XM_233624.4	XM_233624.4		313681	109475778	XM_233624.4	Lrrc38_predicted	XP_233624.4	ILMN_1357642	0000070592	S	858	TCCTTGCAGGTGCTGGAACTCAACGGCAACAACCTGCGCAGCCTCAACGT	5	+	162226652-162226701	5q36	PREDICTED: Rattus norvegicus leucine rich repeat containing 38 (predicted) (Lrrc38_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648464	ILMN_63377	LRRC38_PREDICTED	XM_233624.4	XM_233624.4		313681	109475778	XM_233624.4	Lrrc38_predicted	XP_233624.4	ILMN_1650861	0000840022	S	1078	TGGCCCTGAGGGAGCTGTCCGAAGCCAGTTTCAGCGAGTGTAAGTTCAGC	5	+	162246835-162246884	5q36	PREDICTED: Rattus norvegicus leucine rich repeat containing 38 (predicted) (Lrrc38_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718289-S	ILMN_52364	LOC501351	XM_576762.1	XM_576762.1		501351	62718289	XM_576762.1	LOC501351	XP_576762.1	ILMN_1363680	0000580309	S	1884	TGGACACTTTCCTGAGATGCTGGATGTGAAATGCCGCACACAACACTCGG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501351), mRNA.					
Rattus norvegicus	RefSeq	GI_62638306-S	ILMN_275967	MTAP7_PREDICTED	XM_001073414.1	XM_001073414.1		293016	109460510	XM_001073414.1	Mtap7_predicted	XP_001073414.1	ILMN_1370289	0000360711	S	3391	TCCCACTTAAGAGACAACCAATGAGAAATGGAGAAGGGAGTGCCGAGGCC				1p12	PREDICTED: Rattus norvegicus microtubule-associated protein 7 (predicted) (Mtap7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652448-S	ILMN_69783	RGD1565606_PREDICTED	XM_576272.2	XM_576272.2		500873	109480794	XM_576272.2	RGD1565606_predicted	XP_576272.1	ILMN_1350319	0005670484	S	1196	TCGACTGGCAGCAACACCCACAACCGGAGTCTATCCACGTCTTCAGGGCC	7	+	94716931-94716980	7q33	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC14128 isoform a (predicted) (RGD1565606_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646828-A	ILMN_298001	N5	NM_022857.1	NM_022857.1		64825	12408309	NM_022857.1	N5	NP_074048.1	ILMN_1376702	0002680021	S	1825	TTAAAGTGAGAGGCTGTGGCTGGCAAGGTGGTCCAGTGGGTGCAGGCTTG	4	-	57187108-57187157	4q22	Rattus norvegicus DNA binding protein N5 (N5), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57113834-S	ILMN_270289	V1RE13	NM_001008965.1	NM_001008965.1		494309	57113834	NM_001008965.1	V1re13	NP_001008965.1	ILMN_1372742	0006860332	S	638	GGATTCAACACATCCGTAGCACTCGTGGTTCCAGCCAAATGTCCCCAGAG	7	+	15552601-15552650	7q12	Rattus norvegicus vomeronasal 1 receptor, E13 (V1re13), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54020740-S	ILMN_271440	SHARPIN	NM_031153.2	NM_031153.2		81859	54020740	NM_031153.2	Sharpin	NP_112415.1	ILMN_1373042	0001690746	S	1515	TATGCCCTCTTGTCACAGGCCCAACCACCACCTGAACTTTGGAGGGGACC	7	-	114397838-114397887	7q34	Rattus norvegicus SHANK-associated RH domain interacting protein (Sharpin), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence TAS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The morphological and physiological alterations undergone by the nucleus during apoptosis [goid 30262] [evidence ISS]; The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns [goid 31424] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Conneck1; MGC93373	Conneck1; MGC93373
Rattus norvegicus	RefSeq	GI_47577984-S	ILMN_284920	OLR1091	NM_001000593.1	NM_001000593.1		366843	47577984	NM_001000593.1	Olr1091	NP_001000593.1	ILMN_1350264	0004230292	S	704	CTGAGGGTCGGCACAAGGCTTTCTCCACATGTGCGTCCCACCTCACAGTG	7	+	14033832-14033881	7q11	Rattus norvegicus olfactory receptor 1091 (Olr1091), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-14033129-14034064_ORF; Olr1091	ratchr7-14033129-14034064_ORF; Olr1091
Rattus norvegicus	RefSeq	GI_57164146-S	ILMN_294980	SFRS9	NM_001009255.1	NM_001009255.1		288701	57164146	NM_001009255.1	Sfrs9	NP_001009255.1	ILMN_1349491	0005670044	S	678	ATACCAAAGCCGGGGCTCGCCACACTACTTCTCTCCGTTCAGGCCCTACT	12	-	42546700-42546749	12q16	Rattus norvegicus splicing factor, arginine/serine rich 9 (Sfrs9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC105562	MGC105562
Rattus norvegicus	RefSeq	GI_62667467-S	ILMN_64228	VGLL1_PREDICTED	XM_343832.3	XM_343832.3		363508	109511266	XM_343832.3	Vgll1_predicted	XP_343833.3	ILMN_1360612	0003130047	S	695	GCCATGTGAAGACAGCCGGAAGCACAGCATCACTCTTGAACCTGCCTCCC	X	+	141760331-141760380	Xq36	PREDICTED: Rattus norvegicus vestigial like 1 homolog (Drosophila) (predicted) (Vgll1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34860297-S	ILMN_64373	MMP1A_PREDICTED	XM_235794.3	XM_235794.3		300339	109483048	XM_235794.3	Mmp1a_predicted	XP_235794.2	ILMN_1361154	0004200148	S	1347	GCCTCCGAATAAGAAGAGTTGATGACTCCCGTGATTCTAGTACCTGGTTC	8	+	4353667-4353716	8q11	PREDICTED: Rattus norvegicus matrix metallopeptidase 1a (interstitial collagenase) (predicted) (Mmp1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948451-S	ILMN_276713	GPAA1	NM_001004240.1	NM_001004240.1		300046	51948451	NM_001004240.1	Gpaa1	NP_001004240.1	ILMN_1371187	0006110670	S	1568	CGCTGAAACTGGTGGCCCTGATCTACTTGGCACTGCAGCTGGGTTGCATT	7	+	114381993-114382042	7q34	Rattus norvegicus glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast) (Gpaa1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor [goid 42765] [evidence TAS]; An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor [goid 42765] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence TAS]; A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain [goid 16255] [evidence ISS]	Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor [goid 3923] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes [goid 34235] [evidence ISS]	MGC93877	MGC93877
Rattus norvegicus	RefSeq	GI_62643346-S	ILMN_66308	ARSE	XM_227066.4	XM_227066.4		310326	109464752	XM_227066.4	Arse	XP_227066.3	ILMN_1363901	0006370711	S	1771	AAGATGTCGGAGGCGCCGAACTTGACGGCGGCCATAACGTCAGAGGCAGT	2	+	122669881-122669930	2q25	PREDICTED: Rattus norvegicus arylsulfatase E (chondrodysplasia punctata 1) (Arse), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660970-S	ILMN_67968	LOC289471	XM_214002.4	XM_214002.4		289471	109500170	XM_214002.4	LOC289471	XP_214002.4	ILMN_1350275	0005050332	S	935	TGTGTTAAAGCCTCAGTGCCTCCAAGAAAGCTAGGGCTGGCGGGGCGTGA	14|NW_047433.1	+	21491-21540		PREDICTED: Rattus norvegicus similar to DNA helicase HEL308 (LOC289471), mRNA.					
Rattus norvegicus	RefSeq	GI_62654705	ILMN_48209	ABCC10_PREDICTED	XM_236930.4	XM_236930.4		316231	109485796	XM_236930.4	Abcc10_predicted	XP_236930.4	ILMN_1650413	0002120452	S	5504	ACTTGTGAGCTTGTCTTACCTGCTCCGGACCCTGCCACAATAGGCACCCC	9	+	10240243-10240246	9q12	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 10 (predicted) (Abcc10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654703-S	ILMN_48209	ABCC10_PREDICTED	XM_236930.4	XM_236930.4		316231	109485796	XM_236930.4	Abcc10_predicted	XP_236930.4	ILMN_1352721	0005670722	S	4512	GCTGACCATTGCCCACAGGCTCAACACGATCCTAAACTCTGACCGGGTGC	9	+	10239008-10239025:10239269-10239300	9q12	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 10 (predicted) (Abcc10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577776-S	ILMN_297184	OLR1243	NM_001000451.1	NM_001000451.1		300568	47577776	NM_001000451.1	Olr1243	NP_001000451.1	ILMN_1349801	0005220162	S	437	CTGGTTCATATTTGGTGGGGTTTTCTGGTGCCATGATCCACACTGGATGT	8	+	40651732-40651781	8q22	Rattus norvegicus olfactory receptor 1243 (Olr1243), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1243	Olr1243
Rattus norvegicus	RefSeq	GI_33285018-S	ILMN_274618	CDKN1C	NM_001033757.1	NM_001033757.1		246060	76257395	NM_001033757.1	Cdkn1c	NP_001028929.1	ILMN_2040450	0004250021	S	928	GTGATGAGCTGGGAGCTGAGCCGGTCTCTGAGCAGGGCAAGCAGCAGGGC	1	-	203836866-203836915	1q41	Rattus norvegicus cyclin-dependent kinase inhibitor 1C (P57) (Cdkn1c), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]	Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]	Kip2; p57; p57KIP2; MGC112585	Kip2; p57; p57KIP2; MGC112585
Rattus norvegicus	RefSeq	GI_62651588-S	ILMN_48957	LOC365981	XM_345315.3	XM_345315.3		365981	109478826	XM_345315.3	LOC365981	XP_345316.3	ILMN_1358391	0003190162	S	661	GTCCTGATGACAGAGAGAACAGGAGCTGGAGGGTCAGAAGGTCATGTCTG	6|NW_047768.1	-	96575-96624		PREDICTED: Rattus norvegicus similar to Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein) (LOC365981), mRNA.					
Rattus norvegicus	RefSeq	GI_62666188	ILMN_62359	LOC502444	XM_577925.1	XM_577925.1		502444	62666188	XM_577925.1	LOC502444	XP_577925.1	ILMN_1651048	0005900546	S	23	ATAGCAGCTGTGTGCTGAGGGTATCCCGGCGCAGGAAGAAGGTTTGGCAG					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502444), mRNA.					
Rattus norvegicus	RefSeq	GI_62645451-S	ILMN_59615	RAG1	XM_230375.2	XM_230375.2		84600	62645451	XM_230375.2	Rag1	XP_230375.1	ILMN_1366624	0006180093	S	5775	TGCACACAGATGCCAGAGCAGCGGGGAAAGATGTCTCTCAGGTGGATAGG				3q31	PREDICTED: Rattus norvegicus recombination activating gene 1 (Rag1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence TAS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence IMP]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IDA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence IMP]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence ISS]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence IGI]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_2863705	ILMN_69374	LOC501609	XM_580218.1	XM_580218.1		501609	62667154	XM_580218.1	LOC501609	XP_580218.1	ILMN_1530210	0006900279	S	717	ATACAGAAGCAGATGCATGGTTACAGGGATATAATTGGTGGATTCTAATA					PREDICTED: Rattus norvegicus LOC501609 (LOC501609), mRNA.					
Rattus norvegicus	RefSeq	GI_62667154-S	ILMN_69374	LOC501609	XM_580218.1	XM_580218.1		501609	62667154	XM_580218.1	LOC501609	XP_580218.1	ILMN_1367625	0001190020	S	920	CCTTTCCTGGGGCTTTTCTCATTGTCAGGTGCTCGTCCTGTTGCCAGGCC					PREDICTED: Rattus norvegicus LOC501609 (LOC501609), mRNA.					
Rattus norvegicus	RefSeq	GI_62654489-S	ILMN_59458	LOC501073	XM_580159.1	XM_580159.1		501073	62654489	XM_580159.1	LOC501073	XP_580159.1	ILMN_1352201	0005910112	S	419	GAGGTCAGTCTTCCCACAGGAAAAGCCCCTTCATCTTCAGGGTCCGAGGC					PREDICTED: Rattus norvegicus LOC501073 (LOC501073), mRNA.					
Rattus norvegicus	RefSeq	GI_62656579-S	ILMN_57047	SPAG5	XM_340848.3	XM_340848.3		252918	109488576	XM_340848.3	Spag5	XP_340849.3	ILMN_1355685	0003120288	S	3116	TGTTTCTCTCGCAGGAGGTGAACAAACTGAGGGCTATGTTCCTGGAGGTG	10	-	64314015-64314048:64314129-64314144	10q25	PREDICTED: Rattus norvegicus sperm associated antigen 5 (Spag5), mRNA.	Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62664869-S	ILMN_65725	LOC502190	XM_577649.1	XM_577649.1		502190	62664869	XM_577649.1	LOC502190	XP_577649.1	ILMN_1367322	0002450717	S	758	ACGTGATTTCTCGGCAGCGGCAGCAGGTTCTATGAATTGGCGAACAGCGC					PREDICTED: Rattus norvegicus similar to Cholesteryl ester transfer protein precursor (Lipid transfer protein I) (LOC502190), mRNA.					
Rattus norvegicus	RefSeq	GI_16758679-S	ILMN_275773	IL13	NM_053828.1	NM_053828.1		116553	16758679	NM_053828.1	Il13	NP_446280.1	ILMN_1354244	0006130148	S	129	CACACAAGACCAGAAGACTTCCCTGTGCAACAGCAGCATGGTATGGAGCG	10	-	39094663-39094697:39095926-39095940	10q22	Rattus norvegicus interleukin 13 (Il13), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that activates or increases the frequency, rate, or extent of immunoglobulin production [goid 2639] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 43270] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence IDA]	Interacting selectively with the interleukin-13 receptor [goid 5144] [evidence IEA]; Interacting selectively with the interleukin-13 receptor [goid 5144] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655336-S	ILMN_280755	RGD1563917_PREDICTED	XM_576604.1	XM_576604.1		501176	62655336	XM_576604.1	RGD1563917_predicted	XP_576604.1	ILMN_1349226	0005270603	S	856	GTGGCGTCCAGTCTCTGCACCTTACGTTTTCTGACCCTTGTGAAGATGTG	9	-	84446991-84447040	9q35	PREDICTED: Rattus norvegicus similar to Nuclear autoantigen Sp-100 (Speckled 100 kDa) (predicted) (RGD1563917_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658077-S	ILMN_69960	LOC287996	XM_212689.3	XM_212689.3		287996	62658077	XM_212689.3	LOC287996	XP_212689.2	ILMN_1362913	0001170358	S	0	ATGCATTTCAGCTTCCTTTCCGCCGGGACAGCCATCTTCCAGGAACTCGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC287996), mRNA.					
Rattus norvegicus	RefSeq	GI_8393559-S	ILMN_277125	HPN	NM_017112.1	NM_017112.1		29135	8393559	NM_017112.1	Hpn	NP_058808.1	ILMN_1360162	0006100706	S	1392	TAAAGACTCACTCCGAAGCTACCGGCATGGTAACTCAGCCCTGACCCCGC	1	-	86145862-86145911	1q21	Rattus norvegicus hepsin (transmembrane protease, serine 1) (Hpn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758145-S	ILMN_299890	GNPAT	NM_053410.1	NM_053410.1		84470	16758145	NM_053410.1	Gnpat	NP_445862.1	ILMN_1361425	0006380066	S	1797	TGAGAAGGAGTACTTGGTCACAGCCAGGAAGTTCACCCGCCAGCTTCTGG	19	+	55057127-55057167:55057245-55057253	19q12	Rattus norvegicus glyceronephosphate O-acyltransferase (Gnpat), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence TAS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol [goid 8611] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the reaction: acyl-CoA + glycerone phosphate = CoA + acylglycerone phosphate [goid 16287] [evidence TAS]; Catalysis of the reaction: acyl-CoA + glycerone phosphate = CoA + acylglycerone phosphate [goid 16287] [evidence ISS]; Catalysis of the reaction: acyl-CoA + glycerone phosphate = CoA + acylglycerone phosphate [goid 16287] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577490-S	ILMN_298430	OLR483	NM_001000683.1	NM_001000683.1		404888	47577490	NM_001000683.1	Olr483	NP_001000683.1	ILMN_1375119	0006200338	S	691	GCTGAAGGAAGACGTAAAGCCTTTTCCACCTGCAGCTCTCACATGATGGC	3	-	69364016-69364065	3q24	Rattus norvegicus olfactory receptor 483 (Olr483), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr483	Olr483
Rattus norvegicus	RefSeq	GI_13592048-S	ILMN_294156	ROCK1	NM_031098.1	NM_031098.1		81762	13592048	NM_031098.1	Rock1	NP_112360.1	ILMN_1366295	0003120576	S	4224	GTGACCTACTGCTGTGTTGGAATCATATGGATGCTACCTGATCACCAGGC	18	-	1391998-1392047	18p13	Rattus norvegicus Rho-associated coiled-coil containing protein kinase 1 (Rock1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IMP]; The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere [goid 22614] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The assembly of a bleb, a cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32060] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence ISS]; A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence NAS]; Interacting selectively with the GTP-bound form of the Rho protein [goid 17049] [evidence IMP]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	P160Rock	P160Rock
Rattus norvegicus	RefSeq	GI_27465600-S	ILMN_296958	ACCN3	NM_173135.1	NM_173135.1		286920	27465600	NM_173135.1	Accn3	NP_775158.1	ILMN_1373091	0006380433	S	1172	CAGCTCGCTACCTGGCCCGGAAATACAACCGCAGCGAGTCCTACATTACG	4	-	6126404-6126405:6126657-6126704	4q11	Rattus norvegicus amiloride-sensitive cation channel 3 (Accn3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence ISS]; The series of events in which a sensory chemical stimulus is received by a cell and converted into a molecular signal [goid 50907] [evidence ISS]; The series of events in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50961] [evidence ISS]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence ISS]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]; The series of events involved in the perception of pain in which a sensory chemical stimulus is received by a cell and converted into a molecular signal [goid 50968] [evidence ISS]; The series of events in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50974] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15280] [evidence IMP];  [goid 15280] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Asic3	Asic3
Rattus norvegicus	RefSeq	GI_62667490-S	ILMN_65376	LOC501652	XM_577047.1	XM_577047.1		501652	62667490	XM_577047.1	LOC501652	XP_577047.1	ILMN_1360839	0003990070	S	852	TCACACCAGACTTTTCGCCAGAAACTATGAAGGCCAGAAAGATCCTGGAC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC501652), mRNA.					
Rattus norvegicus	RefSeq	GI_6981111-S	ILMN_285531	IVD	NM_012592.1	NM_012592.1		24513	6981111	NM_012592.1	Ivd	NP_036724.1	ILMN_1352854	0003610592	S	1966	GGTGGCCCAGCTTAGGTTGCCTGGCTCAACTCCAGCCTTGCTGTCTATGT	3	+	105395102-105395151	3q35	Rattus norvegicus isovaleryl coenzyme A dehydrogenase (Ivd), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]	The chemical reactions and pathways involving leucine, 2-amino-4-methylpentanoic acid [goid 6551] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-methylbutanoyl-CoA + ETF = 3-methylbut-2-enoyl-CoA + reduced ETF [goid 8470] [evidence IEA]; Catalysis of the reaction: 3-methylbutanoyl-CoA + ETF = 3-methylbut-2-enoyl-CoA + reduced ETF [goid 8470] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079030-S	ILMN_274522	PAIP2	NM_001014148.1	NM_001014148.1		361309	62079030	NM_001014148.1	Paip2	NP_001014170.1	ILMN_1371388	0003850148	S	1381	GGACCCACACCAACCCATAACCCAATTGAAGCACTCAAGAGACAGTGGCG	18	+	28240582-28240631	18p11	Rattus norvegicus polyadenylate-binding protein interacting protein 2 (Paip2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of translational initiation [goid 45947] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Antagonizes ribosome-mediated translation of mRNA into a polypeptide [goid 30371] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718445-S	ILMN_60520	LOC501398	XM_576811.1	XM_576811.1		501398	62718445	XM_576811.1	LOC501398	XP_576811.1	ILMN_1367588	0002230746	S	985	GTACTTGTCCTGAGTGGTCACCCAGAAGAGTTTCATGGAGATTAGTTCAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC501398), mRNA.					
Rattus norvegicus	RefSeq	GI_62648638-S	ILMN_56399	LOC500410	XM_575772.1	XM_575772.1		500410	62648638	XM_575772.1	LOC500410	XP_575772.1	ILMN_1355615	0002340025	S	1829	CCTGATTTGGGGCGGGACTTTCCATGGCACCCTTTCTCCCACCGAGCCTT				5q13	PREDICTED: Rattus norvegicus similar to MIC2L1 (LOC500410), mRNA.					
Rattus norvegicus	RefSeq	GI_62660534-S	ILMN_56328	LOC498380	XM_573615.1	XM_573615.1		498380	62660534	XM_573615.1	LOC498380	XP_573615.1	ILMN_1371780	0002060373	S	680	GGTGCCTCAACATATAAAAGAGACACATGCTCCACTATGTTCATCGCAGC					PREDICTED: Rattus norvegicus similar to Da1-12 (LOC498380), mRNA.					
Rattus norvegicus	RefSeq	GI_51592103-S	ILMN_279321	SLC1A5	NM_175758.3	NM_175758.3		292657	51592103	NM_175758.3	Slc1a5	NP_786934.1	ILMN_1365597	0002510301	S	2141	CTCCTTTCTGGAGAGGTTATTCAGAGCCTTCTTGCTGGGGCGCATGTGGT	1	+	77124766-77124815	1q21	Rattus norvegicus solute carrier family 1 (neutral amino acid transporter), member 5 (Slc1a5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed extracellular movement of amino acids [goid 6860] [evidence IMP]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence IDA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IMP]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence ISS]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence IDA]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]	H4-ASCT2; Asct2; Slc1a7	H4-ASCT2; Asct2; Slc1a7
Rattus norvegicus	RefSeq	GI_56605687-S	ILMN_274571	USP14	NM_001008301.1	NM_001008301.1		291796	56605687	NM_001008301.1	Usp14	NP_001008302.1	ILMN_1350964	0005340161	S	2007	GCTCTCATCGTGTAACTCAGTGCTGCTGTCCACATCCCATCAACTGGGTG	18	-	1292868-1292917	18p13	Rattus norvegicus ubiquitin specific peptidase 14 (Usp14), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	MGC95160	MGC95160
Rattus norvegicus	RefSeq	GI_62657533-S	ILMN_54738	LOC497678	XM_579381.1	XM_579381.1		497678	62657533	XM_579381.1	LOC497678	XP_579381.1	ILMN_1356937	0000450050	S	15923	CCAAGTATGTCTGCGCACGGACAAGGCGAAAGCATGCTTGATGCGAAAGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013192 (LOC497678), mRNA.					
Rattus norvegicus	RefSeq	GI_62639087-S	ILMN_59780	NOVA2_PREDICTED	XM_214825.3	XM_214825.3		292681	62639087	XM_214825.3	Nova2_predicted	XP_214825.2	ILMN_1357494	0002260592	S	1599	GCTGCACCCTCCCTTCTGGTAGTCATAGGCAGGATTGAGTGACGGCTGAG					PREDICTED: Rattus norvegicus neuro-oncological ventral antigen 2 (predicted) (Nova2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882606-S	ILMN_51151	LOC501346	XM_576757.2	XM_576757.2		501346	109513401	XM_576757.2	LOC501346	XP_576757.2	ILMN_1372604	0005420148	S	214	CTGACAGATCGCCTCCTTTATGTGACAGGTGGATCCATGAGAAAGAGCCC	Un|NW_047879.1	+	511780-511826:513078-513080		PREDICTED: Rattus norvegicus hypothetical LOC501346 (LOC501346), mRNA.					
Rattus norvegicus	RefSeq	GI_27709467	ILMN_263303	RGD1564843_PREDICTED	XM_001061065.1	XM_001061065.1		302765	109476243	XM_001061065.1	RGD1564843_predicted	XP_001061065.1	ILMN_1649750	0000510148	S	734	AAGTGCAGCCAGAAACAGCTTATCCACACGAGACAGAGACCCCACAATCC				5q21	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1564843_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638328-S	ILMN_66751	LOC502222	XM_580242.1	XM_580242.1		502222	62638328	XM_580242.1	LOC502222	XP_580242.1	ILMN_1371733	0005130735	S	1124	GCTGTGGATGGAGGAGGCTTTGGAGACTTTGTGCCAACCTGGAAACAGGG				1p12	PREDICTED: Rattus norvegicus LOC502222 (LOC502222), mRNA.					
Rattus norvegicus	RefSeq	GI_62659036-S	ILMN_62608	LOC497687	XM_579585.1	XM_579585.1		497687	62659036	XM_579585.1	LOC497687	XP_579585.1	ILMN_1354876	0004560546	S	6738	AGGATTGACCCAGTGTGCAAGAAACTCCTGGGGCAGCTGGGGACAGCCCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053922 (LOC497687), mRNA.					
Rattus norvegicus	RefSeq	GI_62650365-S	ILMN_55847	LOC298793	XM_233854.3	XM_233854.3		298793	62650365	XM_233854.3	LOC298793	XP_233854.3	ILMN_1362598	0002030114	S	1696	GACCACCAACTGCTTGCACTGGCCCCCAACATCAAGACTGTATCCACTGG					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (LOC298793), mRNA.					
Rattus norvegicus	RefSeq	GI_16758043-S	ILMN_289342	CAMLG	NM_053334.1	NM_053334.1		81715	16758043	NM_053334.1	Camlg	NP_445786.1	ILMN_1367013	0001240093	S	1239	CAGGCTGGTACTTGTAGGGGACCAGACGGACAGGTCTCAGCTGGCCTAAA	17	-	15033944-15033993	17p14	Rattus norvegicus calcium modulating ligand (Camlg), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The process by which receptor molecules are returned to an active state and in an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal [goid 1881] [evidence IEA]; The process by which receptor molecules are returned to an active state and in an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal [goid 1881] [evidence ISS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IEA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Caml	Caml
Rattus norvegicus	RefSeq	GI_62661039-S	ILMN_266677	LOC683268	XM_001065191.1	XM_001065191.1		683268	109502135	XM_001065191.1	LOC683268	XP_001065191.1	ILMN_1360931	0006370037	S	315	GGGCGCGTTTAAGAAGACCGCACCTCAGTCCCAGACCTGGCGGACACACT					PREDICTED: Rattus norvegicus hypothetical protein LOC683268 (LOC683268), mRNA.					
Rattus norvegicus	RefSeq	GI_55741517-S	ILMN_298862	ECSIT	NM_001006986.1	NM_001006986.1		300447	55741517	NM_001006986.1	Ecsit	NP_001006987.1	ILMN_1362764	0000380097	S	1326	CCTGAGGAAGATGATGAGGCCATTCAGGCACAGCAGCGGCAAGGTCAAAG	8	-	21180841-21180886:21180887-21180890	8q13	Rattus norvegicus ECSIT homolog (Drosophila) (Ecsit), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 51341] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16651] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16651] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62649713-S	ILMN_273303	SYNC_PREDICTED	XM_001060926.1	XM_001060926.1		362606	109477299	XM_001060926.1	Sync_predicted	XP_001060926.1	ILMN_1351054	0000450528	S	1633	CCCTGTAAAAGTACATACACTGGCGGGCTTGCCTGGAGAGGTCAGGCTGG				5q36	PREDICTED: Rattus norvegicus syncoilin (predicted) (Sync_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577598-S	ILMN_279446	OLR532	NM_001000563.1	NM_001000563.1		366102	47577598	NM_001000563.1	Olr532	NP_001000563.1	ILMN_1367562	0002320020	S	713	TCTCTACTTGTGCCTCTCATCTCCTAGGAGTCACTGTGTTTTATGGTTCT	3	-	70373818-70373867	3q24	Rattus norvegicus olfactory receptor 532 (Olr532), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-70270952-70269987_ORF; Olr532	ratchr3-70270952-70269987_ORF; Olr532
Rattus norvegicus	RefSeq	GI_62653831-S	ILMN_49703	LOC367645	XM_346237.2	XM_346237.2		367645	62653831	XM_346237.2	LOC367645	XP_346238.2	ILMN_1356479	0002360524	S	1730	GTGCAGGGACCCTCCTCTGCCATTTCCTGACCATGACCAGAACAGGTTAA				8q24	PREDICTED: Rattus norvegicus similar to AI449441 protein (LOC367645), mRNA.					
Rattus norvegicus	RefSeq	GI_62646884-S	ILMN_63117	RGD1562178_PREDICTED	XM_575395.2	XM_575395.2		500039	109471757	XM_575395.2	RGD1562178_predicted	XP_575395.1	ILMN_1359709	0007040341	S	1434	GCCTGGCACTGGAAAGCCTTGGGTTCGGTCCTCTACAGTGAAGGGTTAGG	4	+	42278594-42278643	4q21	PREDICTED: Rattus norvegicus similar to Adenylate kinase 2 (predicted) (RGD1562178_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649547-S	ILMN_57672	LOC500538	XM_575899.1	XM_575899.1		500538	62649547	XM_575899.1	LOC500538	XP_575899.1	ILMN_1365375	0003290041	S	0	ATCCCGCCCGTCCCGCCATTCTCGCTAGTTCGATCGGTAGCGGGAGCGGA				5q36	PREDICTED: Rattus norvegicus similar to Nuclease sensitive element binding protein 1 (Y box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... (LOC500538), mRNA.					
Rattus norvegicus	RefSeq	GI_62660866-S	ILMN_271617	B3GNT1_PREDICTED	XM_001061345.1	XM_001061345.1		305571	109501096	XM_001061345.1	B3gnt1_predicted	XP_001061345.1	ILMN_1374864	0003290156	S	1217	ACGCGTGAGCTACTCTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGG				14q22	PREDICTED: Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 (predicted) (B3gnt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758961-S	ILMN_268650	HERPUD1	NM_053523.1	NM_053523.1		85430	16758961	NM_053523.1	Herpud1	NP_445975.1	ILMN_1370868	0000870600	S	1494	ACAGAAGGCCCAGGGTCGCATGTTCTGCCTGAGCACCTCCCCAGACGTGT	19	-	11036867-11036916	19p12	Rattus norvegicus homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 (Herpud1), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence TAS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IMP]		Sup	Sup
Rattus norvegicus	RefSeq	GI_14091743-S	ILMN_302607	KALRN	NM_032062.1	NM_032062.1		84009	14091743	NM_032062.1	Kalrn	NP_114451.1	ILMN_1354310	0001980670	S	8870	GTTACATCGTCAACAGGGTGAACCAGGGGACCTAGCTATCCCACCGTCCC	11	+	68611317-68611336	11q22	Rattus norvegicus kalirin, RhoGEF kinase (Kalrn), mRNA.	A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IDA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IDA]; Any process that modulates the frequency, rate or extent of dendrite development [goid 50773] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [pmid 12177196] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [pmid 12177196] [evidence IDA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [pmid 12177196] [evidence TAS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 8910496] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Kalirin; Hapip; Duo	Kalirin; Hapip; Duo
Rattus norvegicus	RefSeq	GI_62647921	ILMN_66774	LOC502867	XM_578368.1	XM_578368.1		502867	62647921	XM_578368.1	LOC502867	XP_578368.1	ILMN_1651042	0003610021	S	587	GATATGGCGAGATCCACCGCCACTGGGAAGACACTGAAAACTTCAGGCAC				4q34	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC502867), mRNA.					
Rattus norvegicus	RefSeq	GI_62662366-S	ILMN_263860	CHERP_PREDICTED	XM_001063602.1	XM_001063602.1		290614	109503866	XM_001063602.1	Cherp_predicted	XP_001063602.1	ILMN_1359149	0001090121	S	3337	AGCTTCTGACACTGGGCTAAGTTCTGGTGGGTCAGGGGAAGATGGCCTCC				16p14	PREDICTED: Rattus norvegicus calcium homeostasis endoplasmic reticulum protein (predicted), transcript variant 4 (Cherp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078492-S	ILMN_263860	CHERP_PREDICTED	XM_001063602.1	XM_001063602.1		290614	109503866	XM_001063602.1	Cherp_predicted	XP_001063602.1	ILMN_1350370	0005290288	S	3777	GCACCCTGGGGCACCTCACCCACAGCTGGAGGAAATCTTTTACAAAAGGC				16p14	PREDICTED: Rattus norvegicus calcium homeostasis endoplasmic reticulum protein (predicted), transcript variant 4 (Cherp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742765-S	ILMN_273297	FGF9	NM_012952.1	NM_012952.1		25444	25742765	NM_012952.1	Fgf9	NP_037084.1	ILMN_1365421	0006760750	S	1000	TGATTTATTGTGAAAGCAGGGAGAGAGGCTGCGGGTGCCGAAGGTTGGCC	15	+	37155591-37155640	15p12	Rattus norvegicus fibroblast growth factor 9 (Fgf9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEA]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence IEA]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence IDA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IEA]; The specification of male sex of an individual organism [goid 30238] [evidence ISS]; The specification of male sex of an individual organism [goid 30238] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IGI]; Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 45743] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 45743] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence IEA]; The process controlling the timing and/or rate at which relatively unspecialized cells acquire specialized features [goid 48505] [evidence ISS]; The process controlling the timing and/or rate at which relatively unspecialized cells acquire specialized features [goid 48505] [evidence IEA]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence IEA]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence IEA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence IEA]	Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence IPI]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6980965-S	ILMN_301861	GNAZ	NM_013189.1	NM_013189.1		25740	6980965	NM_013189.1	Gnaz	NP_037321.1	ILMN_1359034	0002760161	S	3204	CTCGACCCTTTGTTTGCTACCCGTGTGTCCGAGGTCAATGTGCAGACCCG	20	-	14146940-14146989	20p12	Rattus norvegicus guanine nucleotide binding protein, alpha z subunit (Gnaz), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]	GXA	GXA
Rattus norvegicus	RefSeq	GI_62649615-S	ILMN_264897	RGD1562679_PREDICTED	XM_001055964.1	XM_001055964.1		298528	109477198	XM_001055964.1	RGD1562679_predicted	XP_001055964.1	ILMN_1360524	0004920273	S	3540	ATGGGAGCCTGAGCCAGTGGGTGGTGCCCCTTACATCCTGTGCCTTGGCT				5q36	PREDICTED: Rattus norvegicus similar to Ephrin type-A receptor 10 (predicted) (RGD1562679_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665060-S	ILMN_52321	LOC498932	XM_574218.1	XM_574218.1		498932	62665060	XM_574218.1	LOC498932	XP_574218.1	ILMN_1354770	0001050121	S	3849	TGTACTGAGGCAGAGGAACGAGACCTGGAGCCATTTAGGGAGCGGGATGG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498932), mRNA.					
Rattus norvegicus	RefSeq	GI_34878092-S	ILMN_276273	LOC690672	XM_001075162.1	XM_001075162.1		690672	109512976	XM_001075162.1	LOC690672	XP_001075162.1	ILMN_1372588	0006290193	S	616	AAAGGCTCTGTGAAGAGGCCGGAATGAACATCTGTGACCCCAGTGCCACG	Un|NW_047851.1	-	3008577-3008626		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC690672), mRNA.					
Rattus norvegicus	RefSeq	GI_62659802-S	ILMN_69964	LOC498295	XM_573523.1	XM_573523.1		498295	62659802	XM_573523.1	LOC498295	XP_573523.1	ILMN_1349993	0002060020	S	2528	TCCGAGGGGCTTTGTAGGGAAACAGACCCATGGTCAACCCGTGCTTGCTG				13q26	PREDICTED: Rattus norvegicus similar to SET and MYND domain containing 3 (LOC498295), mRNA.					
Rattus norvegicus	RefSeq	GI_62657876-S	ILMN_266815	RGD1563727_PREDICTED	XM_001066716.1	XM_001066716.1		498080	109494350	XM_001066716.1	RGD1563727_predicted	XP_001066716.1	ILMN_1366080	0003840114	S	1454	GGTCAGAGAACACACCTGAGCCATCATCAACACAGACACCTAACCCACTG					PREDICTED: Rattus norvegicus similar to Gene model 609 (predicted) (RGD1563727_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164134-S	ILMN_298469	GIYD2	NM_001009292.1	NM_001009292.1		293489	57164134	NM_001009292.1	Giyd2	NP_001009292.1	ILMN_1351700	0006520129	S	2596	ATGGGGGCTAGAGAGCTGGCCCAGTGGTTAAGTGGCTGTTCTTGTAGAGG	1	-	185843533-185843582	1q36	Rattus norvegicus GIY-YIG domain containing 2 (Giyd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]	MGC94602; LRRGT00058; RGD1311568	MGC94602; LRRGT00058; RGD1311568
Rattus norvegicus	RefSeq	GI_62648441-S	ILMN_283435	RGD1560971_PREDICTED	XM_001073304.1	XM_001073304.1		502919	109474436	XM_001073304.1	RGD1560971_predicted	XP_001073304.1	ILMN_1361842	0007040091	S	948	TGAGAATGCCCTCCACAGGATGCAGGAGTGGGATGACTGGAAGGACACCC				4q44	PREDICTED: Rattus norvegicus similar to alpha4-b protein (predicted) (RGD1560971_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646284-S	ILMN_265664	SAMHD1_PREDICTED	XM_001067782.1	XM_001067782.1		311580	109471194	XM_001067782.1	Samhd1_predicted	XP_001067782.1	ILMN_1351255	0005050450	S	1751	TCCGCGTGTACTATAAGAAGAAGGACAAGAAGAGCTTGGACGCCGCCGGG				3q42	PREDICTED: Rattus norvegicus SAM domain and HD domain, 1 (predicted) (Samhd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506506-S	ILMN_264312	CORO1B	NM_019222.1	NM_019222.1		29474	9506506	NM_019222.1	Coro1b	NP_062095.1	ILMN_1374244	0003140315	S	1443	AGCATCTGGGCCGCATGGAGAATGGGGATACATAGGACCACCAGGGACCT	1	+	206737685-206737699:206737700-206737734	1q42	Rattus norvegicus coronin, actin-binding protein, 1B (Coro1b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21728393-S	ILMN_274202	KLHL17	NM_145671.1	NM_145671.1		246757	21728393	NM_145671.1	Klhl17	NP_663704.1	ILMN_1368208	0002260537	S	1729	TGGGAGAGTGTGGCACCCATGAATATCCGCAGGAGCACGCATGACCTCGT	5	-	173065013-173065035:173065278-173065304	5q36	Rattus norvegicus kelch-like 17 (Drosophila) (Klhl17), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IPI]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9507006-S	ILMN_302837	PTGFRN	NM_019243.1	NM_019243.1		29602	9507006	NM_019243.1	Ptgfrn	NP_062116.1	ILMN_1353023	0005340025	S	5451	GGGAGCAGGAACAATAAGCAATACTACACCACTCGCTACTGTCGGGGGTC	2	-	196091789-196091838	2q34	Rattus norvegicus prostaglandin F2 receptor negative regulator (Ptgfrn), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666026-S	ILMN_54580	RGD1563747_PREDICTED	XM_574762.2	XM_574762.2		499439	109509502	XM_574762.2	RGD1563747_predicted	XP_574762.1	ILMN_1369368	0002970446	S	147	GGCCAGGCAAATAAAGCTCCCTGTGTCCCGCATCCGAGTGTGGTTTCAGA	20	-	36895079-36895128	20q11	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1563747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741519-S	ILMN_287653	PECI	NM_001006966.1	NM_001006966.1		291075	55741519	NM_001006966.1	Peci	NP_001006967.1	ILMN_1370689	0006860193	S	1205	GCTGTGAAGTCCACGACAATGGCAAGACTCCTCACAAGAAGGACAGACTG	17	+	36214828-36214834:36214835-36214877	17p12	Rattus norvegicus peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase (Peci), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC94706	MGC94706
Rattus norvegicus	RefSeq	GI_62649588-S	ILMN_262655	TRIT1_PREDICTED	XM_001054252.1	XM_001054252.1		362586	109477171	XM_001054252.1	Trit1_predicted	XP_001054252.1	ILMN_1356706	0000630687	S	2316	GTAAGGCACAGTCAGGAGTTCTGGACAGGAGAACGGCAGGAAGGAGTGGC				5q36	PREDICTED: Rattus norvegicus tRNA isopentenyltransferase 1 (predicted) (Trit1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_7709997-S	ILMN_291497	CD3D	NM_013169.1	NM_013169.1		25710	7709997	NM_013169.1	Cd3d	NP_037301.1	ILMN_1366587	0004480619	S	541	CAGCCGTCTTGGAGGGAACTGGCCCCGGAACAAAAGGTCTTGAGATGGAG	8	+	47936621-47936663:47936664-47936670	8q22	Rattus norvegicus CD3 molecule delta polypeptide (Cd3d), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein [goid 42105] [evidence IEA]; A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein [goid 42105] [evidence ISS]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644492-S	ILMN_55918	LOC502600	XM_578087.1	XM_578087.1		502600	62644492	XM_578087.1	LOC502600	XP_578087.1	ILMN_1366734	0000630292	S	35	TGGTCTGTTCACTGGCTGCTACGCAAGTCCCCACAGCCTCTATGGCATTC					PREDICTED: Rattus norvegicus similar to thymosin, beta 10 (LOC502600), mRNA.					
Rattus norvegicus	RefSeq	GI_13929049-S	ILMN_298959	CNN1	NM_031747.1	NM_031747.1		65204	13929049	NM_031747.1	Cnn1	NP_113935.1	ILMN_1361200	0004050593	S	1227	GTAAGTACCTCCCAGAACCGGAAACCCTTCAAGCGAAGCCCCCAGAACCC				8q13	Rattus norvegicus calponin 1, basic, smooth muscle (Cnn1), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin. The myosin may be organized into filaments [goid 31032] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576652-S	ILMN_269557	OLR1690	NM_001000274.1	NM_001000274.1		294162	47576652	NM_001000274.1	Olr1690	NP_001000274.1	ILMN_1353361	0005270538	S	590	TGGGAGTGTCTACTTTCATGACTGTATTAGCCTTCGCTTGCTTCGTGGGG	20	-	581575-581624	20p12	Rattus norvegicus olfactory receptor 1690 (Olr1690), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1690	Olr1690
Rattus norvegicus	RefSeq	GI_20806134-S	ILMN_284421	LGALS3BP	NM_139096.1	NM_139096.1		245955	20806134	NM_139096.1	Lgals3bp	NP_620796.1	ILMN_1352246	0003170184	S	1817	CTTCAGCAGCTTCCGCGAGGTCATCCGCCCCTTCTACCTCACCAACTCCA	10	-	108388469-108388518	10q32.3	Rattus norvegicus lectin, galactoside-binding, soluble, 3 binding protein (Lgals3bp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ppicap; MGC93166	Ppicap; MGC93166
Rattus norvegicus	RefSeq	GI_62656726-S	ILMN_65439	LOC303407	XM_220818.3	XM_220818.3		303407	62656726	XM_220818.3	LOC303407	XP_220818.3	ILMN_1369438	0001190070	S	1505	GTACTAGACGCCTTTTGCCTAGATTACGTCTCTGCTGTGGGGCAGCCATG				10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610020H15 (predicted) (LOC303407), mRNA.					
Rattus norvegicus	RefSeq	GI_62663661-S	ILMN_281437	TCF8	XM_001056207.1	XM_001056207.1		25705	109505883	XM_001056207.1	Tcf8	XP_001056207.1	ILMN_1374962	0001170037	S	3810	AGCTTCCAGCAGAAGGCCAGCGGGAGCGAGAGCAAGCGACTGTCTGAAGA				17q12.1	PREDICTED: Rattus norvegicus transcription factor 8 (Tcf8), mRNA.					
Rattus norvegicus	RefSeq	GI_23618892-S	ILMN_297872	LZTS1	NM_153470.1	NM_153470.1		266711	23618892	NM_153470.1	Lzts1	NP_703200.1	ILMN_1373484	0003610386	S	4739	AGTGCCCCTCAGTGGAGACTGCTTTCCCTCTTGAACACTGGAGCCCTCAG	16	+	22300726-22300775	16p14	Rattus norvegicus leucine zipper, putative tumor suppressor 1 (Lzts1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IMP]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence NAS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Psdzip70	Psdzip70
Rattus norvegicus	RefSeq	GI_29789029-S	ILMN_272910	STX2	NM_012748.1	NM_012748.1		25130	29789029	NM_012748.1	Stx2	NP_036880.1	ILMN_1358230	0003440025	S	853	GGCTTGACGGTTGGCAAATGATTGCGTAGATGGCGCTGGGTGCTTGCCTC	12	+	28773293-28773313:28773314-28773342	12q14	Rattus norvegicus syntaxin 2 (Stx2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis [goid 30496] [evidence IDA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence TAS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence IDA]; The process of physically separating progeny cells during cytokinesis; this may involve enzymatic digestion of septum or cell wall components [goid 920] [evidence IMP]; The process by which vesicles are directed to specific destination membranes, mediated by microtubules that grow between molecules at the vesicle membrane and target membrane surfaces [goid 6903] [evidence TAS]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence TAS]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence TAS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence TAS]; Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell [goid 30033] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IMP]; The joining of two or more lipid bilayer membranes that surround a cell [goid 45026] [evidence IMP]; The directed movement of substances within a cell [goid 46907] [evidence TAS]; The process by which the anatomical structures of the gut are generated and organized. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48547] [evidence IMP]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646804-S	ILMN_59280	RGD1563091_PREDICTED	XM_575365.2	XM_575365.2		500011	109471716	XM_575365.2	RGD1563091_predicted	XP_575365.2	ILMN_1354701	0003450338	S	4675	CCCACTCATTTTGGTCAGCTTAGAAGTGGGAGGAGCATAGAAAAGGTGTC	4	-	27976209-27976258	4q13	PREDICTED: Rattus norvegicus similar to OEF2 (predicted) (RGD1563091_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646733-S	ILMN_55923	LOC502713	XM_578212.1	XM_578212.1		502713	62646733	XM_578212.1	LOC502713	XP_578212.1	ILMN_1370358	0005360390	S	186	CACATCTCTGTGGACTGTGCATTGCCTGTGGCCATGACTGAGTTGGTGCG					PREDICTED: Rattus norvegicus similar to Dehydrogenase/reductase SDR family member 7 precursor (Retinal short-chain dehydrogenase/reductase 4) (LOC502713), mRNA.					
Rattus norvegicus	RefSeq	GI_11120693-S	ILMN_279929	ACRV1	NM_021747.1	NM_021747.1		60353	11120693	NM_021747.1	Acrv1	NP_068515.1	ILMN_1368293	0000870035	S	698	GAAGGTGGAAAGCTCCAGTTCATGGTTCAAGGGTGTGAGAACATGTGCCC	8	+	37941474-37941477:37943603-37943648	8q21	Rattus norvegicus acrosomal vesicle protein 1 (Acrv1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]			Sp10	Sp10
Rattus norvegicus	RefSeq	GI_62643955-S	ILMN_50607	LOC295175	XM_227332.3	XM_227332.3		295175	62643955	XM_227332.3	LOC295175	XP_227332.3	ILMN_1363416	0002970010	S	367	CCTCCTGCAGCCAGGTGGTGTGGCTTCTACAGTCCCATTATGTCCAAAAC					PREDICTED: Rattus norvegicus similar to peptidoglycan recognition protein I alpha (LOC295175), mRNA.					
Rattus norvegicus	RefSeq	GI_62647771	ILMN_270027	RGD1561981_PREDICTED	XM_001071457.1	XM_001071457.1		500253	109473814	XM_001071457.1	RGD1561981_predicted	XP_001071457.1	ILMN_1650800	0002470138	S	338	CTGGACCCTTTTTCCTTCGAGTTCTGGGACACTCCGTTCAGCGACCGAGG				4q34	PREDICTED: Rattus norvegicus similar to mDj6 (predicted) (RGD1561981_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621125-S	ILMN_290374	PPP1R10	NM_022951.1	NM_022951.1		65045	12621125	NM_022951.1	Ppp1r10	NP_075240.1	ILMN_1355426	0003870053	S	3775	TGTAGTGTTGGGCCACTCTTGCCTACAGCCATTTTCGAGACTCCGTGAGG				20p12	Rattus norvegicus protein phosphatase 1, regulatory subunit 10 (Ppp1r10), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IDA]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the enzyme protein phosphatase 1 [goid 8157] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Pnuts; Fb19	Pnuts; Fb19
Rattus norvegicus	RefSeq	GI_47577582-S	ILMN_295161	OLR664	NM_001000347.1	NM_001000347.1		295870	47577582	NM_001000347.1	Olr664	NP_001000347.1	ILMN_1365555	0001660082	S	550	CTGGAGTTGGCATGCACTAACACTTATGTTTATGGCCTCTTAGTGTTTGC	3	+	73093325-73093374	3q24	Rattus norvegicus olfactory receptor 664 (Olr664), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr664	Olr664
Rattus norvegicus	RefSeq	GI_62666353	ILMN_70328	LOC365602	XM_577963.1	XM_577963.1		365602	62666353	XM_577963.1	LOC365602	XP_577963.1	ILMN_1651169	0002450408	S	1108	GTCCTTCACACAGACGCACACGTCCTGTCAGCATCCATAGGAAACCTGCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510006C20 (LOC365602), mRNA.					
Rattus norvegicus	RefSeq	GI_62657781-S	ILMN_48033	LOC498071	XM_579780.1	XM_579780.1		498071	62657781	XM_579780.1	LOC498071	XP_579780.1	ILMN_1361066	0005390070	S	166	CCACCAGACTTGGGAAGCCAATGCACCAGGGTCATGAGTTCAATGCCAGC					PREDICTED: Rattus norvegicus LOC498071 (LOC498071), mRNA.					
Rattus norvegicus	RefSeq	GI_62655397-S	ILMN_265555	RGD1309644_PREDICTED	XM_001067145.1	XM_001067145.1		316624	109487510	XM_001067145.1	RGD1309644_predicted	XP_001067145.1	ILMN_1354109	0006290010	S	1700	ACAGCCTACACGAGAACGGCGCATTAGTGCCTCTGGGCGACCTGCTGTAT				9q36	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0469 (predicted) (RGD1309644_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644573-S	ILMN_285834	RGD1564620_PREDICTED	XM_001080116.1	XM_001080116.1		365962	109467787	XM_001080116.1	RGD1564620_predicted	XP_001080116.1	ILMN_1374633	0005270576	S	975	GAAACCACAGTCCGCGATCTGGATGTACGGCATCGGGATTCAGACGAGGC				2q45	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC34032 (predicted) (RGD1564620_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639149-S	ILMN_63185	LOC499097	XM_574388.1	XM_574388.1		499097	62639149	XM_574388.1	LOC499097	XP_574388.1	ILMN_1353109	0004670497	S	940	CGCCAATCGCCTTGCGGGTGATGGAGAGGCGGGAAGATTATTGTCAAGCA				1q21	PREDICTED: Rattus norvegicus similar to BC049730 protein (LOC499097), mRNA.					
Rattus norvegicus	RefSeq	GI_62661652	ILMN_263510	TRIM35	NM_001025142.1	NM_001025142.1		498538	68341930	NM_001025142.1	Trim35	NP_001020313.1	ILMN_1650563	0000870110	S	1472	GCATCTGCCACCTGCGTGTCTCCATCAAAGAAGAGCTGGACATCTGAGCT	15	+	45746007-45746053:45746054-45746056	15p12	Rattus norvegicus tripartite motif protein 35 (Trim35), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_39930494-S	ILMN_285978	PTCH1	NM_053566.1	NM_053566.1		89830	39930494	NM_053566.1	Ptch1	NP_446018.1	ILMN_1371138	0000940156	S	4194	TCCCCATGTGCCTTTTCATGTCAGGTGTGAGAGGAGGGACTCGAAGGTGG	17	+	7142348-7142397	17p14	Rattus norvegicus patched homolog 1 (Drosophila) (Ptch1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system [goid 1841] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; Any process that modulates the frequency, rate or extent of smoothened signaling [goid 8589] [evidence ISS]; Any process that modulates the frequency, rate or extent of smoothened signaling [goid 8589] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]	Interacting selectively with the patched (ptc) protein, a receptor for hedgehog proteins [goid 5113] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with the hedgehog protein to initiate a change in cell activity [goid 8158] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Ptch; Ptch2	Ptch; Ptch2
Rattus norvegicus	RefSeq	GI_6978682-S	ILMN_271803	CORT	NM_012835.1	NM_012835.1		25305	6978682	NM_012835.1	Cort	NP_036967.1	ILMN_1362678	0006520050	S	189	CTGACTTTCCTTGCCTGGTGGCATGAGTGGGCTTCCCAAGACAGCTCCAG	5	-	166199186-166199235	5q36	Rattus norvegicus cortistatin (Cort), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 45187] [evidence IDA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62655608-A	ILMN_273401	RSL1D1	NM_001008876.1	NM_001008876.1		302898	57114333	NM_001008876.1	Rsl1d1	NP_001008876.1	ILMN_1376915	0002630450	S	1462	GGAGAACCAGAAGGCTCAGCTGGTGGTGGAAGACAAGGGTGCTCTGGCTA	10	+	4326139-4326188	10q11	Rattus norvegicus ribosomal L1 domain containing 1 (Rsl1d1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664648-S	ILMN_52746	LOC307255	XM_225708.3	XM_225708.3		307255	62664648	XM_225708.3	LOC307255	XP_225708.3	ILMN_1369394	0002680398	S	4125	GTAAGAGCAATAAAGCACGGGCAGAACACTGGAGGCCGTGTCACAGTTCC					PREDICTED: Rattus norvegicus similar to LRRG00122 (LOC307255), mRNA.					
Rattus norvegicus	RefSeq	GI_57526822-S	ILMN_299267	NUDCD2	NM_001009621.1	NM_001009621.1		287199	57526822	NM_001009621.1	Nudcd2	NP_001009621.1	ILMN_1360112	0000770605	S	1348	GCCTCTTACTGTCAAAAAACAATTTAGGCCCCTGAGTGTAGGCCACAGGC	10	+	25768666-25768715	10q12	Rattus norvegicus NudC domain containing 2 (Nudcd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]			RGD1307203; MGC109498	RGD1307203; MGC109498
Rattus norvegicus	RefSeq	GI_62663997	ILMN_68157	LOC364802	XM_344643.3	XM_344643.3		364802	109505325	XM_344643.3	LOC364802	XP_344644.1	ILMN_1650139	0006520372	S	3	GTGGCTCGTAGGAACTCCTGCCAGTTCTAAGCCTAATTCTATCTCCTGCA	17|NW_047499.1	-	23396-23445		PREDICTED: Rattus norvegicus similar to CG8043-PA (LOC364802), mRNA.					
Rattus norvegicus	RefSeq	GI_61556979-S	ILMN_271550	ARIH1	NM_001013108.1	NM_001013108.1		300756	61556979	NM_001013108.1	Arih1	NP_001013126.1	ILMN_1361429	0001230494	S	1786	GGCTATGAAAAAGATCTGTGGGAGTACATTGAGGACTGAGCCTGGCCCTG	8	-	63205033-63205082	8q24	Rattus norvegicus ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (Arih1), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660673-S	ILMN_276244	RGD1310828_PREDICTED	XM_001061814.1	XM_001061814.1		305458	109500789	XM_001061814.1	RGD1310828_predicted	XP_001061814.1	ILMN_1349330	0006370270	S	1098	AGTGGTTTGCCAGCCGCCAGGATCCCCAGCGCCCTGACACTTGGCTAGCA				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610039G24 gene (predicted) (RGD1310828_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34857680	ILMN_70278	RGD1309616_PREDICTED	XM_230512.3	XM_230512.3		311361	109468721	XM_230512.3	RGD1309616_predicted	XP_230512.2	ILMN_1650133	0005900309	S	1581	GTTTCCTCTCGTCAGCACCATCAGGCACAACACTATCACTGGGAGGTGGC	3	+	108314990-108315013:108317385-108317410	3q35	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12973 (predicted) (RGD1309616_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576604-S	ILMN_273155	OLR1670	NM_001000895.1	NM_001000895.1		405198	47576604	NM_001000895.1	Olr1670	NP_001000895.1	ILMN_1370306	0000770110	S	408	GAATCAGCGTAAATGCCTCCTGTTAGTGTCCCTTGTGTGGTTGACTGGAA	20	+	165065-165114	20p12	Rattus norvegicus olfactory receptor 1670 (Olr1670), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1670	Olr1670
Rattus norvegicus	RefSeq	GI_62666879-S	ILMN_54046	LOC501565	XM_576969.1	XM_576969.1		501565	62666879	XM_576969.1	LOC501565	XP_576969.1	ILMN_1353593	0006550435	S	1459	GCTACCCTAAGCATCAAGCAAAACGAGCCCGTGGTCATGGTGGTCGGCTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632419I22 (LOC501565), mRNA.					
Rattus norvegicus	RefSeq	GI_11560106-S	ILMN_301943	MRE11A	NM_022279.1	NM_022279.1		64046	11560106	NM_022279.1	Mre11a	NP_071615.1	ILMN_1373654	0002060022	S	2008	ACAGCACCTAGCAAACGGATGTCCCAGAGCCAGACAGCCAAAGGGGTGGA	8	+	11628777-11628826	8q11	Rattus norvegicus MRE11 meiotic recombination 11 homolog A (S. cerevisiae) (Mre11a), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IDA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence TAS]	A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence TAS]; Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence TAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence TAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity [goid 7131] [evidence TAS]	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	Mre11	Mre11
Rattus norvegicus	RefSeq	GI_62658755-A	ILMN_296243	GTF2IRD1	NM_001001504.1	NM_001001504.1		246770	48040417	NM_001001504.1	Gtf2ird1	NP_001001504.1	ILMN_1376536	0002630021	S	2949	CGTGCAGCTTCCAGGCCCCCTTGATTATTAGACCTCAGAGCCGAATCAGG	12	+	23425933-23425963:23425964-23425982	12q12	Rattus norvegicus general transcription factor II I repeat domain-containing 1 (Gtf2ird1), mRNA.			The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence NAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Gtf3	Gtf3
Rattus norvegicus	RefSeq	GI_62658755-S	ILMN_296243	GTF2IRD1	NM_001001504.1	NM_001001504.1		246770	48040417	NM_001001504.1	Gtf2ird1	NP_001001504.1	ILMN_2040487	0002480187	A	2869	AATCCAGAGTCTGTGGCGTCCACCAACCAGATCTCCCTCGTGCAGTGGCC	12	+	23424811-23424852:23425895-23425902	12q12	Rattus norvegicus general transcription factor II I repeat domain-containing 1 (Gtf2ird1), mRNA.			The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence NAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Gtf3	Gtf3
Rattus norvegicus	RefSeq	GI_22219439-S	ILMN_280717	VOF16	NM_147207.1	NM_147207.1		259227	22219439	NM_147207.1	Vof16	NP_671740.1	ILMN_1372954	0000670161	S	1753	CCCTATGCTTTCGAGTGGATTCCTCCTGTTTCTCGGATGTAAAACCGGGC	8	+	44572003-44572052	8q22	Rattus norvegicus ischemia related factor vof-16 (Vof16), mRNA.				Vof-16	Vof-16
Rattus norvegicus	RefSeq	GI_31377531-S	ILMN_300124	TRH	NM_013046.2	NM_013046.2		25569	31377531	NM_013046.2	Trh	NP_037178.1	ILMN_1366607	0003360487	S	1195	GTAAGACTGACCTGGTATAGCTTCAGCGCATCCTCCAAGGTTGGGGTCCC	4	-	126425290-126425339	4q34	Rattus norvegicus thyrotropin releasing hormone (Trh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of gamma-aminobutyric acid [goid 14054] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]	The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 8437] [evidence IDA]	THR; TRH01	THR; TRH01
Rattus norvegicus	RefSeq	GI_62655258-S	ILMN_52809	PAX3	XM_343601.3	XM_343601.3		114502	109486198	XM_343601.3	Pax3	XP_343602.3	ILMN_1359930	0006220369	S	2305	GCCAGATATTGCATAAGTGAACTGTCCACATGGAGCCCTGTTTCCGGCCT	9	-	77478136-77478185	9q33	PREDICTED: Rattus norvegicus paired box gene 3 (Pax3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of association neurons. Association neurons are cells located in the dorsal portion of the spinal cord that integrate sensory input. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21527] [evidence ISS]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IEA]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence ISS]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence NAS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IEA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660416-S	ILMN_69446	LOC498354	XM_573588.1	XM_573588.1		498354	62660416	XM_573588.1	LOC498354	XP_573588.1	ILMN_1364496	0002260446	S	2836	ACTCAGTTCACACTCCACCGACCCTGACTACGCTTAGAGCCATTGCTATT					PREDICTED: Rattus norvegicus similar to LRRG00130 (LOC498354), mRNA.		The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time [goid 3964] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647338-S	ILMN_62316	LOC500142	XM_575494.1	XM_575494.1		500142	62647338	XM_575494.1	LOC500142	XP_575494.1	ILMN_1372898	0002810707	S	889	GGTGGAGACCAGTACTTTGCTAAACCACAAAACCAAGGTGGCTACGGAGG					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC500142), mRNA.					
Rattus norvegicus	RefSeq	GI_47777693-S	ILMN_267230	OLR932	NM_001001386.1	NM_001001386.1		366802	47777693	NM_001001386.1	Olr932	NP_001001386.1	ILMN_1349915	0001740390	S	782	CTGCCAAGGCTGGAGTCGCTTTGACAAAGGGGGTGGCTATGCTCAACACC	7	-	4386316-4386365	7q11	Rattus norvegicus olfactory receptor 932 (Olr932), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr932	Olr932
Rattus norvegicus	RefSeq	GI_62661340-S	ILMN_53236	LOC498498	XM_579829.1	XM_579829.1		498498	62661340	XM_579829.1	LOC498498	XP_579829.1	ILMN_2040041	0004610474	S	716	TTTCGGCCGCCCTCGGCGGGCCTTTGATCCCTGCAGCGGCTTACAATGTA					PREDICTED: Rattus norvegicus LOC498498 (LOC498498), mRNA.					
Rattus norvegicus	RefSeq	GI_56090565-S	ILMN_271645	FKBP9	NM_001007646.1	NM_001007646.1		297123	56090565	NM_001007646.1	Fkbp9	NP_001007647.1	ILMN_1353562	0002510079	S	2694	TCTGCCACCCATTTGTGTCTTGGAGGGTAATTTGGGGTCTCCTGCTGTAG	4	+	85865647-85865696	4q24	Rattus norvegicus FK506 binding protein 9, 63 kDa (Fkbp9), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC94086	MGC94086
Rattus norvegicus	RefSeq	GI_62718411-S	ILMN_302495	LOC367536	XR_009504.1	XR_009504.1		367536	109519600	XR_009504.1	LOC367536		ILMN_1369913	0006860458	S	554	CAGGTCAATGTGTGCAGTTCACCAGAAGCGACATTTCCAAAAAGACCGGC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367536), mRNA.					
Rattus norvegicus	RefSeq	GI_62647505-S	ILMN_69856	GNG12	XM_578287.1	XM_578287.1		114120	62647505	XM_578287.1	Gng12	XP_578287.1	ILMN_1350392	0000130164	S	468	AAAGAGCAGGAAGCCGGGGGGCAGCTTGTACCTCAGTCAGCACAGAGAAG				4q31	PREDICTED: Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 12 (Gng12), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647373-S	ILMN_63911	MAD2L1_PREDICTED	XM_216161.2	XM_216161.2		297176	62647373	XM_216161.2	Mad2l1_predicted	XP_216161.1	ILMN_1363365	0007050494	S	746	CCAGTGAGAGCCGTTGTGGGACTGCTCAAATTGCTGAACACCCAGTCTCC				4q31	PREDICTED: Rattus norvegicus MAD2 (mitotic arrest deficient, homolog)-like 1 (yeast) (predicted) (Mad2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656184-S	ILMN_52897	RGD1559667_PREDICTED	XM_573106.2	XM_573106.2		497919	109488245	XM_573106.2	RGD1559667_predicted	XP_573106.1	ILMN_1370523	0000070446	S	453	GGTCTGACCAGTCTGAGGAGACCGGCTGAAGCTCGGCCCAAACAATCTGT	10	+	46969357-46969406	10q22	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (predicted) (RGD1559667_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577426-S	ILMN_301788	OLR45	NM_001000124.1	NM_001000124.1		293192	47577426	NM_001000124.1	Olr45	NP_001000124.1	ILMN_1371275	0000580433	S	879	CTACGGTGTCAAGACTAAGCAGATTCGAGAGCGCGTCTTAGGACTATTCC	1	+	160238038-160238087	1q32	Rattus norvegicus olfactory receptor 45 (Olr45), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr45	Olr45
Rattus norvegicus	RefSeq	GI_62662266-S	ILMN_59138	RGD1304626_PREDICTED	XM_224672.4	XM_224672.4		306306	109503097	XM_224672.4	RGD1304626_predicted	XP_224672.4	ILMN_1367602	0001400528	S	3217	GCCAAGACAAGCATCCCGAGGCCCTTAGCTCGGCCAAAAGAACTGCATGC	16	-	13055410-13055459	16p14	PREDICTED: Rattus norvegicus similar to KIAA1128 protein (predicted) (RGD1304626_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660365-A	ILMN_296041	LRRC66	NM_001008763.1	NM_001008763.1		289587	56912244	NM_001008763.1	Lrrc66	NP_001008763.1	ILMN_1376362	0005700494	S	2362	GACTCTAGCCCCCTTGACCCTGAGAATGTACCAACATGGACCCAACCCCC	14	+	37000835-37000884	14p11	Rattus norvegicus leucine rich repeat containing 66 (Lrrc66), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664290-S	ILMN_55315	LOC291669	XM_226020.3	XM_226020.3		291669	62664290	XM_226020.3	LOC291669	XP_226020.3	ILMN_1365291	0003120128	S	1843	GTGACTCGGGGTCTGCTGAACAGAGCCTGCATTGGATGCAGAAAGAGTAC				18p11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (LOC291669), mRNA.					
Rattus norvegicus	RefSeq	GI_62644189-S	ILMN_63717	RGD1309139_PREDICTED	XM_342321.3	XM_342321.3		362020	109465444	XM_342321.3	RGD1309139_predicted	XP_342322.3	ILMN_1370767	0006400066	S	411	GGGATCCATAGTGTCCCCTCACACTGCGGCTACTAATGGAGGTTACTCCC	2	+	204107370-204107380:204107785-204107823	2q34	PREDICTED: Rattus norvegicus similar to CG5435-PA (predicted) (RGD1309139_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646844-S	ILMN_289890	RGD1566237_PREDICTED	XR_007348.1	XR_007348.1		500022	109473101	XR_007348.1	RGD1566237_predicted		ILMN_1366838	0000940632	S	85	TCCCAGCTTTGCGTGACAGGAGACCAAAGTGACAGGAGGCACCGCATCCA				4q13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (predicted) (RGD1566237_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665225-S	ILMN_295848	RGD1565102_PREDICTED	XR_008915.1	XR_008915.1		307762	109508700	XR_008915.1	RGD1565102_predicted		ILMN_1352356	0002450333	S	444	CATATCCTATTAGTAGCAGTGCCCTCCAGACGTGGCACCTGAACCGTGGC				19q11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S15 (RIG protein) (predicted) (RGD1565102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642045-S	ILMN_270736	TJP2	NM_053773.1	NM_053773.1		115769	77735345	NM_053773.1	Tjp2	NP_446225.1	ILMN_1366515	0001170593	S	3672	GGCTTTACCAGGACACCAGAGGAAGCTACGGCAGTGATCCCGAGGAAGAG	1	-	227476091-227476140	1q51	Rattus norvegicus tight junction protein 2 (Tjp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	ZO-2; MGC124724	ZO-2; MGC124724
Rattus norvegicus	RefSeq	GI_62655540-S	ILMN_54021	EMILIN2_PREDICTED	XM_237520.3	XM_237520.3		316736	62655540	XM_237520.3	Emilin2_predicted	XP_237520.3	ILMN_1358898	0005130601	S	3391	GAGAGTTCCTGGAATACCATCGTCCCCCTGGGGCTGTGCATACCTGCGGG				9q38	PREDICTED: Rattus norvegicus elastin microfibril interfacer 2 (predicted) (Emilin2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647292-S	ILMN_59982	LOC497785	XM_579677.1	XM_579677.1		497785	62647292	XM_579677.1	LOC497785	XP_579677.1	ILMN_1360553	0005550600	S	3917	CCTGTAGATGGCCTTTGGGCCTTCACATGCATGTGCACACATGTGCCCTT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_147211 (LOC497785), mRNA.					
Rattus norvegicus	RefSeq	Rn.25547	ILMN_284029	CD99	XM_001061998.1	XM_001061998.1		652929	109510245	XM_001061998.1	Cd99	XP_001061998.1	ILMN_1530273	0006400070	S	286	CTCTGACCGAGACCTGGAGGATGTGGCTGGACATGGGGGACGAGGAGGCG					PREDICTED: Rattus norvegicus CD99 antigen (Cd99), mRNA.					
Rattus norvegicus	RefSeq	GI_57526992-S	ILMN_272471	CLIC2	NM_001009651.1	NM_001009651.1		294141	57526992	NM_001009651.1	Clic2	NP_001009651.1	ILMN_1368780	0000610438	S	845	GTCTGGCGCTATCTCCACAATGCCTACGCCCGTGAAGAATTTGCCCACAC	20	+	81193-81242	20p12	Rattus norvegicus chloride intracellular channel 2 (Clic2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	MGC108828	MGC108828
Rattus norvegicus	RefSeq	GI_47577660-S	ILMN_294227	OLR557	NM_001000669.1	NM_001000669.1		404871	47577660	NM_001000669.1	Olr557	NP_001000669.1	ILMN_1366472	0006650692	S	961	ATCATGGTGGCACTGAGGAAATTACACAATAACTTACTGACATGGTGGGG	3	+	70969481-70969530	3q24	Rattus norvegicus olfactory receptor 557 (Olr557), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr557	Olr557
Rattus norvegicus	RefSeq	GI_6981079-S	ILMN_293062	IGFBP1	NM_013144.1	NM_013144.1		25685	6981079	NM_013144.1	Igfbp1	NP_037276.1	ILMN_1367509	0005080040	S	1294	CAGTCTGAGGTAGGGGCCTTTCAGTGGGTTCAGGGAGGAAGGTTAGCCCT	14	+	87955081-87955130	14q21	Rattus norvegicus insulin-like growth factor binding protein 1 (Igfbp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence TAS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IEP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence TAS]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence TAS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]	IGFBA; IGF-BP25; IBP1	IGFBA; IGF-BP25; IBP1
Rattus norvegicus	RefSeq	GI_16758779-S	ILMN_294026	OPLAH	NM_053904.1	NM_053904.1		116684	16758779	NM_053904.1	Oplah	NP_446356.1	ILMN_1374710	0003360092	S	3939	ATTCGAGTACCGCCGCGCCCAGGAAGCCGTATGAGTGCCCCACAATAAAG	7	-	114326753-114326769:114326770-114326802	7q34	Rattus norvegicus 5-oxoprolinase (ATP-hydrolysing) (Oplah), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + 5-oxo-L-proline + 2 H2O = ADP + phosphate + L-glutamate [goid 17168] [evidence IEA]	MGC105359	MGC105359
Rattus norvegicus	RefSeq	GI_51948409-S	ILMN_266582	RGD1303117	NM_001004219.1	NM_001004219.1		292764	51948409	NM_001004219.1	RGD1303117	NP_001004219.1	ILMN_1373590	0000730332	S	1009	CTCCCATGCCTACCTGGAAGAGCCGAAGAGAGGATGGAGGAAGGGGGAAA	1	-	84285842-84285891	1q21	Rattus norvegicus hypothetical protein LOC292764 (RGD1303117), mRNA.				MGC94040	MGC94040
Rattus norvegicus	RefSeq	GI_62646743-S	ILMN_56392	LOC502719	XM_578218.1	XM_578218.1		502719	62646743	XM_578218.1	LOC502719	XP_578218.1	ILMN_1353465	0005690139	S	1076	GGTCCTCCACACAGGACCAGGATTCTGCAGAGAAACATGCTCTGAGGGTG				4q12	PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (LOC502719), mRNA.					
Rattus norvegicus	RefSeq	GI_22779850-S	ILMN_278939	SNX27	NM_152847.1	NM_152847.1		260323	22779850	NM_152847.1	Snx27	NP_690060.1	ILMN_1353338	0001050139	S	5678	CTGGGGAGGAATGAGACTGAAGAGGGCAGATCCTGGTAGGAGCACTTGGC	2	-	189471548-189471597	2q34	Rattus norvegicus sorting nexin family member 27 (Snx27), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	Mrt1	Mrt1
Rattus norvegicus	RefSeq	GI_8393354-S	ILMN_273989	FDX1	NM_017126.1	NM_017126.1		29189	8393354	NM_017126.1	Fdx1	NP_058822.1	ILMN_1365429	0003610156	S	550	GGCTATGGACAATATGACTGTCCGTGTGCCTGAAGCAGTGGCAGATGTCC	8	-	55291633-55291682	8q24	Rattus norvegicus ferredoxin 1 (Fdx1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658354-S	ILMN_66892	RGD1564571_PREDICTED	XM_221808.4	XM_221808.4		304197	109494951	XM_221808.4	RGD1564571_predicted	XP_221808.4	ILMN_1358500	0000360390	S	408	GTCAGACTCACAAGAGGAAGACCAATGGCTGTGGGTAGATGGCTCACCAC	12	-	1791743-1791792	12p12	PREDICTED: Rattus norvegicus similar to DC-SIGN (predicted) (RGD1564571_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705544-S	ILMN_302531	RAB3IL1	NM_134411.1	NM_134411.1		171452	19705544	NM_134411.1	Rab3il1	NP_599238.1	ILMN_1359970	0003840672	S	791	CAGCTCTAGTTCGGACGGCAGTGGAGGACAACACACTCACCATTGAGCCC	1	+	212478166-212478215	1q43	Rattus norvegicus RAB3A interacting protein (rabin3)-like 1 (Rab3il1), mRNA.			Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 17112] [evidence IDA]	Grab	Grab
Rattus norvegicus	RefSeq	GI_57114237-S	ILMN_276441	V1RM6	NM_001008930.1	NM_001008930.1		494278	57114237	NM_001008930.1	V1rm6	NP_001008930.1	ILMN_1365721	0003840079	S	782	CCCAAACTGAGCACCCAACCCCCTGGCTGCTAAATACTTCTATACTGGTG	1	+	72284244-72284293	1q21	Rattus norvegicus vomeronasal 1 receptor, M6 (V1rm6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928977-S	ILMN_67300	CLDN3	NM_031700.2	NM_031700.2		65130	82617585	NM_031700.2	Cldn3	NP_113888.2	ILMN_1366655	0002970433	S	1378	CCAGCCCCGCAGCCAGAAGGCTCATAGTGGGCAGAGACAGGCAAACTATA	12|NW_047384.1	-	95416-95465		Rattus norvegicus claudin 3 (Cldn3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_60223054-S	ILMN_302696	LMAN1L	NM_001012465.1	NM_001012465.1		300743	60223054	NM_001012465.1	Lman1l	NP_001012483.1	ILMN_1355062	0002320019	S	1254	TGCAGAAGGACCTCCGGGATCTGGTGAAAATGACAGCCAAGCCTCCCCGC	8	-	61362644-61362668:61363260-61363284	8q24	Rattus norvegicus lectin, mannose-binding, 1 like (Lman1l), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			slamp	slamp
Rattus norvegicus	RefSeq	GI_62654501-S	ILMN_60261	LOC501075	XM_576487.1	XM_576487.1		501075	62654501	XM_576487.1	LOC501075	XP_576487.1	ILMN_1374057	0001570433	S	0	GCTCACAGAGGCAGAGGATTTGTGTGGTCTTTGTGACTTCCACCATGGCG					PREDICTED: Rattus norvegicus similar to small nuclear ribonucleoprotein E (LOC501075), mRNA.					
Rattus norvegicus	RefSeq	GI_6981143-S	ILMN_290812	LAMP1	NM_012857.1	NM_012857.1		25328	6981143	NM_012857.1	Lamp1	NP_036989.1	ILMN_1357538	0002970601	S	1682	AGACACTTGGGCCTGGCAAGGGTGGCTGATGGTGGTTAGGCTGCACACTT	16	-	81213322-81213371	16q12.5	Rattus norvegicus lysosomal-associated membrane protein 1 (Lamp1), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]	The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]		LGP120	LGP120
Rattus norvegicus	RefSeq	GI_14389304-S	ILMN_268554	MSLN	NM_031658.1	NM_031658.1		60333	14389304	NM_031658.1	Msln	NP_113846.1	ILMN_1368737	0001340603	S	1807	CTGGACAGTCTGGGTTTGGGACTTCAGGGTGGCATCCCCAATGGCTACCT	10	-	15017474-15017523	10q12	Rattus norvegicus mesothelin (Msln), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650523-S	ILMN_279411	TCFCP2L2	NM_001037354.1	NM_001037354.1		313994	82654187	NM_001037354.1	Tcfcp2l2	NP_001032431.1	ILMN_1354316	0006420408	S	1470	CAGGCTGGCAGGCAGAGGTGGGCAAGCTGAACAGAATCACCTTAGCAGAG	6	+	42305610-42305659	6q16	Rattus norvegicus transcription factor CP2-like 2 (Tcfcp2l2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663754-S	ILMN_66813	LARP5_PREDICTED	XM_225526.4	XM_225526.4		307070	109505149	XM_225526.4	Larp5_predicted	XP_225526.4	ILMN_1370735	0000780129	S	4547	CCTCCCAGAGGCAAAGATGGCCTGATGCACATGACCATTTCCTTCAGAGC	17	-	71932959-71933008	17q12.1	PREDICTED: Rattus norvegicus La ribonucleoprotein domain family, member 5 (predicted) (Larp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758841-S	ILMN_296470	APBB3	NM_053957.1	NM_053957.1		117026	16758841	NM_053957.1	Apbb3	NP_446409.1	ILMN_1370349	0001580440	S	1752	GGGCTGGGGAAAGAGGCTCTATACTCTTCCAGTCCCTAGGGTTCTGTAGC	18	-	29310638-29310638:29310639-29310687	18p11	Rattus norvegicus amyloid beta (A4) precursor protein-binding, family B, member 3 (Apbb3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Fe65l2	Fe65l2
Rattus norvegicus	RefSeq	GI_62654545-S	ILMN_62505	LIMD1_PREDICTED	XM_236734.4	XM_236734.4		316101	109484124	XM_236734.4	Limd1_predicted	XP_236734.3	ILMN_1364831	0007100010	S	2903	TGGAGGTGAGCAGGAGAATGCCTGCACCCAGATAACCCTCACACAGCCTG	8	+	128293523-128293572	8q32	PREDICTED: Rattus norvegicus LIM domains containing 1 (predicted) (Limd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655352-S	ILMN_297423	LOC501180	NM_001024364.1	NM_001024364.1		501180	66730530	NM_001024364.1	LOC501180	NP_001019535.1	ILMN_1369285	0006370451	S	1153	CCTCTTTCGCAGTGCCAGGTCAGCTTTCTCGTCTGGGGTGATGGCTGGAA	9	+	85190214-85190263	9q35	Rattus norvegicus similar to hypothetical protein MGC35154 (LOC501180), mRNA.					
Rattus norvegicus	RefSeq	GI_62663025-S	ILMN_66727	LOC290921	XM_225059.4	XM_225059.4		290921	109503624	XM_225059.4	LOC290921	XP_225059.3	ILMN_1371811	0001240010	S	1107	GACACCCACCAAACACGCCATCGTGCAGACCCTGGTGCATCTCAAGTTCC	16|NW_047478.1	+	31374-31423		PREDICTED: Rattus norvegicus similar to Growth/differentiation factor 2 precursor (GDF-2) (Bone morphogenetic protein 9) (BMP-9) (LOC290921), mRNA.					
Rattus norvegicus	RefSeq	GI_6980955-S	ILMN_282978	GLUD1	NM_012570.1	NM_012570.1		24399	6980955	NM_012570.1	Glud1	NP_036702.1	ILMN_1358897	0004590364	S	2543	TAGAGTGTCCCAGAAGAAAAGACTGGCTCCCTGTTTGGAGGCTGGCAGAC	16	+	9998930-9998979	16p16	Rattus norvegicus glutamate dehydrogenase 1 (Glud1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glutamate, the anion of 2-aminopentanedioic acid [goid 6538] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of glutamate, the anion of 2-aminopentanedioic acid [goid 6538] [evidence ISS]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+ [goid 4352] [evidence IDA]; Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+ [goid 4352] [evidence ISS]; Catalysis of the reaction: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H + H+ [goid 4353] [evidence IEA]; Catalysis of the reaction: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H + H+ [goid 4353] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC93608; MRG-2; Glud	MGC93608; MRG-2; Glud
Rattus norvegicus	RefSeq	GI_12621095-S	ILMN_297143	ABP1	NM_022935.1	NM_022935.1		65029	12621095	NM_022935.1	Abp1	NP_075224.1	ILMN_1373859	0004210593	S	2467	AGGAAGGACCACAATTTTCTGCCGGTGGTTCGGTGGTTTGGAGGGTGGTG	4	+	76977464-76977513	4q24	Rattus norvegicus amiloride binding protein 1 (amine oxidase, copper-containing) (Abp1), mRNA.		The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence TAS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence IEA]	Abp	Abp
Rattus norvegicus	RefSeq	GI_62652314-S	ILMN_63215	COHH1_PREDICTED	XM_243588.3	XM_243588.3		315036	62652314	XM_243588.3	Cohh1_predicted	XP_243588.3	ILMN_1367048	0006380397	S	12248	TCAGGATGCCCTGGAACTCACTCTGCTGGTCTCCAACTCAAGGTCCACAG				7q22	PREDICTED: Rattus norvegicus Cohen syndrome homolog 1  (predicted) (Cohh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657424	ILMN_63054	LOC501745	XM_577146.1	XM_577146.1		501745	62657424	XM_577146.1	LOC501745	XP_577146.1	ILMN_1650808	0006510471	S	918	CTTTGAGAAGACCAAGTCACGGCATGGGAGGTCGAGCCGGGTGAACAAGG				10q32.2	PREDICTED: Rattus norvegicus similar to dendritic cell-derived immunoglobulin(Ig)-like receptor 1, DIgR1 - mouse (LOC501745), mRNA.					
Rattus norvegicus	RefSeq	GI_58865963-A	ILMN_263669	MARCH2	NM_001034108.1	NM_001034108.1		362849	77628147	NM_001034108.1	March2	NP_001029280.1	ILMN_1376395	0001740632	S	706	GACCAATCAGAAAGTCCGGCTGAAGATCCGGGAAGCAGATGGCTCCGAGG	7	-	16193654-16193703	7q12	Rattus norvegicus membrane-associated ring finger (C3HC4) 2 (March2), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MARCH-II; RGD1306395	MARCH-II; RGD1306395
Rattus norvegicus	RefSeq	GI_62651835-I	ILMN_263669	MARCH2	NM_001034108.1	NM_001034108.1		362849	77628147	NM_001034108.1	March2	NP_001029280.1	ILMN_1375729	0006510711	S	1158	CCAGCAGGCTTCTTGCATTACTCTGCACCTAGCTGGCTTGCTTTACTGGC	7	-	16193202-16193251	7q12	Rattus norvegicus membrane-associated ring finger (C3HC4) 2 (March2), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MARCH-II; RGD1306395	MARCH-II; RGD1306395
Rattus norvegicus	RefSeq	GI_62660474-S	ILMN_49955	LOC498366	XM_573600.1	XM_573600.1		498366	62660474	XM_573600.1	LOC498366	XP_573600.1	ILMN_1350538	0006110148	S	1156	AGGGTTGGAACCCAACCTGGTTCTGTCTTTGGTGTTTAAAAGGGGCCATG				14p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130005N14 (LOC498366), mRNA.					
Rattus norvegicus	RefSeq	GI_62644828-S	ILMN_50886	RGD1565575_PREDICTED	XM_342400.3	XM_342400.3		362096	109467975	XM_342400.3	RGD1565575_predicted	XP_342401.3	ILMN_1357692	0001450546	S	7886	CTGACTTGGACAGGAGGAGGCTGGATGATAGCAGTGCCAAGAGGAGACGG	3	+	8156405-8156454	3p12	PREDICTED: Rattus norvegicus similar to senataxin; DEAxQ-box helicase; tRNA splicing endonuclease regulator 1 (predicted) (RGD1565575_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718490-S	ILMN_64089	LOC503355	XM_578893.1	XM_578893.1		503355	62718490	XM_578893.1	LOC503355	XP_578893.1	ILMN_1372979	0004780072	S	560	ATGTGTGCAGTTCACCAGAAGCGATGGGTCCAAAAAGATCGGCAATTTCA					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC503355), mRNA.					
Rattus norvegicus	RefSeq	GI_62717920-S	ILMN_263655	LOC301154	XM_001058271.1	XM_001058271.1		301154	109486523	XM_001058271.1	LOC301154	XP_001058271.1	ILMN_1348858	0001170168	S	2455	CTGGCCTCTAGTGCTAGCATTTTAAGCCTGATCTTTGCCCCCAAGTGCTA					PREDICTED: Rattus norvegicus similar to EC1-V2R pheromone receptor (LOC301154), mRNA.					
Rattus norvegicus	RefSeq	GI_46485420-S	ILMN_271869	NUDT2	NM_207596.1	NM_207596.1		297998	46485420	NM_207596.1	Nudt2	NP_997479.1	ILMN_1366175	0006840048	S	569	GCGCTGGCCTTGGGCTTGCTACAGCCGAGAGCAGATAGGTTAGTGAAATT	5	+	58901632-58901681	5q22	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 2 (Nudt2), mRNA.			Catalysis of the reaction: P(1),P(4)-bis(5'-nucleosyl)tetraphosphate + H2O = NTP + NMP. Acts on bis(5'-guanosyl)-, bis(5'-xanthosyl)-, bis(5'-adenosyl)- and bis(5'-uridyl)-tetraphosphate [goid 4081] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence TAS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27229297-S	ILMN_271259	ELAVL3	NM_172324.1	NM_172324.1		282824	27229297	NM_172324.1	Elavl3	NP_758827.1	ILMN_1369333	0000610176	S	1444	AAGAAGAAAGCAGAGAGGAGACCCCCATTCCCACCTCACCCTCACCACCC	8	-	21124275-21124324	8q13	Rattus norvegicus ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) (Elavl3), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718856-S	ILMN_69687	LOC501501	XM_576902.1	XM_576902.1		501501	62718856	XM_576902.1	LOC501501	XP_576902.1	ILMN_1368148	0004590072	S	184	GAACCCTGAACACAGAACGATAGCCACAAGACAGTGGACCAGGAGTGCTG					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34) (LOC501501), mRNA.					
Rattus norvegicus	RefSeq	GI_19173787-S	ILMN_290058	SLC25A10	NM_133418.1	NM_133418.1		170943	19173787	NM_133418.1	Slc25a10	NP_596909.1	ILMN_1359141	0003520735	S	1633	GGGCCAGGGGCTCATGCTGGAGCTGGGGCTATGATGGATTCATTTTATGT	10	+	109884989-109885038	10q32.3	Rattus norvegicus solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 (Slc25a10), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IDA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IDA]; The directed movement of thiosulfate into, out of, within or between cells [goid 15709] [evidence IDA]; The directed movement of malate into, out of, within or between cells [goid 15743] [evidence IDA]; The directed movement of succinate, the dianion of ethane dicarboxylic acid, into, out of, within or between cells [goid 15744] [evidence IDA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the transfer of phosphate (PO4 3-) ions from one side of a membrane to the other [goid 15114] [evidence IDA]; Catalysis of the transfer of sulfate ions (SO4 2-) from one side of a membrane to the other [goid 15116] [evidence IDA]; Catalysis of the transfer of thiosulfate ions (S2O3 2-) from one side of a membrane to the other [goid 15117] [evidence IDA]; Catalysis of the transfer of malate from one side of the membrane to the other. Malate is a chiral hydroxydicarboxylic acid, hydroxybutanedioic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 15140] [evidence IDA]; Catalysis of the transfer of succinate, the dianion of ethane dicarboxylic acid, from one side of the membrane to the other [goid 15141] [evidence IDA]; Catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 15291] [evidence ISS]; Catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 15291] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IDA]	Dic; MGC93224	Dic; MGC93224
Rattus norvegicus	RefSeq	GI_34882117-S	ILMN_263495	ST6GAL2	XM_001058146.1	XM_001058146.1		301155	109486521	XM_001058146.1	St6gal2	XP_001058146.1	ILMN_1349506	0003390102	S	1843	AGGAGCTGGGAAACAAGAAGGCCAGAAGCCACCAGAAGGGTAAGAAGCGC					PREDICTED: Rattus norvegicus beta galactoside alpha 2,6 sialyltransferase 2 (St6gal2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9311] [evidence ISS]	Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-acetyl-beta-D-glucosamine = CMP + alpha-N-acetylneuraminyl-2,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine [goid 3835] [evidence ISS]; Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-acetyl-beta-D-glucosamine = CMP + alpha-N-acetylneuraminyl-2,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine [goid 3835] [evidence IEA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865733-A	ILMN_272045	SLC35A3	NM_001012082.1	NM_001012082.1		310808	58865733	NM_001012082.1	Slc35a3	NP_001012082.1	ILMN_1376966	0006860440	S	1307	TTGGAAGTGTGTCCAGGAAGTCGGGTTAGAGGGGATACTGGGAGGAGGCC	2	-	212903523-212903572	2q41	Rattus norvegicus solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 (Slc35a3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of nucleotide-sugars into, out of, within or between cells. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative [goid 15780] [evidence IEA]	Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative [goid 5338] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657762-S	ILMN_69706	EPHA6_PREDICTED	XM_221595.4	XM_221595.4		29202	109493029	XM_221595.4	Epha6_predicted	XP_221595.4	ILMN_1357885	0004050138	S	1705	AAGACTGCGGTGCAGGACTTCGATTCATCCCAAGACCCACCGGACTTATC	11	+	40967131-40967180	11q12	PREDICTED: Rattus norvegicus Eph receptor A6 (predicted) (Epha6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657764-S	ILMN_69706	EPHA6_PREDICTED	XM_221595.4	XM_221595.4		29202	109493029	XM_221595.4	Epha6_predicted	XP_221595.4	ILMN_1369910	0000430168	S	3309	CACCAGCTGATGCTCCACTGCTGGCAGAAGGAGAGAAACCACAGGCCAAA	11	+	41444881-41444930	11q12	PREDICTED: Rattus norvegicus Eph receptor A6 (predicted) (Epha6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660612-S	ILMN_278357	RGD1561846_PREDICTED	XM_001062883.1	XM_001062883.1		498392	109500813	XM_001062883.1	RGD1561846_predicted	XP_001062883.1	ILMN_1369145	0000770739	S	631	TGGGGGAGCAAGCACGTGGGAACAGCAAAACCCCATGCCTTTGTGACTGC				14q21	PREDICTED: Rattus norvegicus similar to Cytokine-like protein C17 precursor (UNQ1942/PRO4425) (predicted) (RGD1561846_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650141-S	ILMN_65597	LOC246295	XM_575968.2	XM_575968.2		246295	109475892	XM_575968.2	LOC246295	XP_575968.2	ILMN_1370163	0000840292	S	3012	GCACAATGAACCTGCGCAAGACACACATTCTCTGCAAGGCTCCAGCCCCG	5	+	170792909-170792958	5q36	PREDICTED: Rattus norvegicus glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein (LOC246295), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IMP]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IMP]; Interacting selectively with thienylcyclohexylpiperidine [goid 16596] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_34882778-S	ILMN_64002	LOC316846	XM_229299.2	XM_229299.2		316846	34882778	XM_229299.2	LOC316846	XP_229299.2	ILMN_1368279	0005550458	S	553	CAGGTCAATGTGTGCAGTTCACCAGAAGCGATGGGTCCAAAAAGATCGGC					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC316846), mRNA.					
Rattus norvegicus	RefSeq	GI_62660235-S	ILMN_55677	LOC501896	XM_577319.1	XM_577319.1		501896	62660235	XM_577319.1	LOC501896	XP_577319.1	ILMN_1373998	0004920121	S	1275	GCTCATGTCTGCAGAGAAAGGTCAAGAATTGCTGAAGGTCACACAGTTGC				14p22	PREDICTED: Rattus norvegicus similar to CDNA sequence BC061212 (LOC501896), mRNA.					
Rattus norvegicus	RefSeq	GI_62643878-S	ILMN_267202	TMOD4_PREDICTED	XM_001054854.1	XM_001054854.1		295261	109467151	XM_001054854.1	Tmod4_predicted	XP_001054854.1	ILMN_1355437	0001050390	S	1010	CACAGGGCTCATGGCTGTGCTGAAGGCAGTTCGAGAAAACGCTACTCTCA				2q34	PREDICTED: Rattus norvegicus tropomodulin 4 (predicted) (Tmod4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653709-S	ILMN_66608	PSTPIP1_PREDICTED	XM_217152.3	XM_217152.3		300732	62653709	XM_217152.3	Pstpip1_predicted	XP_217152.3	ILMN_1368364	0003870397	S	1275	GGGCTGCTACATGGAAGTCCCAAGACCACACCTTCTCAAGCTCCTGCCGA				8q24	PREDICTED: Rattus norvegicus proline-serine-threonine phosphatase-interacting protein 1 (predicted) (Pstpip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865583-A	ILMN_291514	RNF25	NM_001012004.1	NM_001012004.1		301515	58865583	NM_001012004.1	Rnf25	NP_001012004.1	ILMN_1376753	0006840253	S	1375	TCTGGTACTCGCAGGGAGCCCCTGGGCTTGGAATCTGAGGAAGGTTCCTA	9	-	73944227-73944276	9q33	Rattus norvegicus ring finger protein 25 (Rnf25), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659756-S	ILMN_285917	IGSF9_PREDICTED	XM_001055810.1	XM_001055810.1		304982	109499069	XM_001055810.1	Igsf9_predicted	XP_001055810.1	ILMN_1349248	0001400148	S	3753	CCAGGGCCCGGTTACCAGTCTGTCAGCAGTCCATCTCTTACCCTGAACAG				13q24	PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 9 (predicted) (Igsf9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659968-S	ILMN_265737	RGD1310439_PREDICTED	XM_001068900.1	XM_001068900.1		305073	109499296	XM_001068900.1	RGD1310439_predicted	XP_001068900.1	ILMN_1362797	0000070112	S	2182	TCATCCCCAAGAAGTCCATCATCCCAGACACCCAGTTCCAGGAGACAGAG				13q27	PREDICTED: Rattus norvegicus similar to retinoic acid-regulated nuclear matrix-associated protein (predicted) (RGD1310439_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639194-S	ILMN_281318	RGD1561337_PREDICTED	XM_001077513.1	XM_001077513.1		499105	109461498	XM_001077513.1	RGD1561337_predicted	XP_001077513.1	ILMN_1365998	0002060465	S	2688	TGTGTGGCTTTGACCTGTGTAGACGGTTGCAGTCATTCATATTCCAGTGG				1q21	PREDICTED: Rattus norvegicus similar to enhancer of polycomb homolog 2 (predicted) (RGD1561337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855471-S	ILMN_281318	RGD1561337_PREDICTED	XM_001077513.1	XM_001077513.1		499105	109461498	XM_001077513.1	RGD1561337_predicted	XP_001077513.1	ILMN_1368328	0001740100	S	1883	TATACCTCAAGAAAACCAGGGCAGACTGTGAGCAGTAAAAGGGTTTCTGC				1q21	PREDICTED: Rattus norvegicus similar to enhancer of polycomb homolog 2 (predicted) (RGD1561337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605833	ILMN_287426	PRR13	NM_001008379.1	NM_001008379.1		363004	56605833	NM_001008379.1	Prr13	NP_001008380.1	ILMN_1649875	0006420551	S	617	TGTGCCTTCTCCCCGCTGTTGGGGAAGATGACTGCCGAGGGGTAGCAAAA	7	+	141220055-141220104	7q36	Rattus norvegicus proline rich 13 (Prr13), mRNA.				MGC105664	MGC105664
Rattus norvegicus	RefSeq	GI_62079190-S	ILMN_271377	CNRIP1	NM_001014232.1	NM_001014232.1		364208	62079190	NM_001014232.1	Cnrip1	NP_001014254.1	ILMN_1362071	0006660017	S	1109	CGGTAAACGGGACCCAAATATTGTGCTTCCCATCAGCAGCTGTCAGCTTC	14	+	97937389-97937438	14q22	Rattus norvegicus cannabinoid receptor interacting protein 1 (Cnrip1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Crip1a	Crip1a
Rattus norvegicus	RefSeq	GI_62664774-S	ILMN_61115	LOC498902	XM_574191.1	XM_574191.1		498902	62664774	XM_574191.1	LOC498902	XP_574191.1	ILMN_1360858	0001170408	S	365	GGCTCCTGTCAAACACCACTGCAGGGCTCAGGAGTCCACAGGAAATAGCC				19p14	PREDICTED: Rattus norvegicus similar to chemokine-like factor super family 4 (LOC498902), mRNA.					
Rattus norvegicus	RefSeq	GI_19424205-S	ILMN_284121	IGSF6	NM_133542.1	NM_133542.1		171064	19424205	NM_133542.1	Igsf6	NP_598226.1	ILMN_1360389	0002810397	S	1907	CAGTGGTGGGGGAGGGGGAATTGTTCTTTGAATGTAAGTACCAACGAGCG	1	-	179911959-179912008	1q36	Rattus norvegicus immunoglobulin superfamily, member 6 (Igsf6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			DORA	DORA
Rattus norvegicus	RefSeq	GI_8394333-S	ILMN_57551	SORD	NM_017052.2	NM_017052.2		24788	77404285	NM_017052.2	Sord	NP_058748.2	ILMN_1366773	0006110129	S	1179	AGCCCACTCTCTCAGCATCTAAGGGCTAAATGGACCAGAAGGGGAAGCCA	3	+	109047486-109047535	3q35	Rattus norvegicus sorbitol dehydrogenase (Sord), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]	The chemical reactions and pathways involving sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group [goid 6060] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients [goid 31667] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-iditol + NAD+ = L-sorbose + NADH + H+ [goid 3939] [evidence IEA]; Catalysis of the reaction: L-iditol + NAD+ = L-sorbose + NADH + H+ [goid 3939] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576986-S	ILMN_302574	OLR268	NM_001000733.1	NM_001000733.1		404989	47576986	NM_001000733.1	Olr268	NP_001000733.1	ILMN_1359197	0005390110	S	663	TATCTATATCCTCATCACCATTCTGAAGATGCGCTCCACTGGGAGCCGCC	1	+	165960209-165960258	1q33	Rattus norvegicus olfactory receptor 268 (Olr268), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr268	Olr268
Rattus norvegicus	RefSeq	GI_62646817-S	ILMN_59885	LOC502729	XM_578228.1	XM_578228.1		502729	62646817	XM_578228.1	LOC502729	XP_578228.1	ILMN_1353377	0002260113	S	567	AGTAGAGGACCATCTCAGGGCTTTCAACCCAGCACACAAGATACTTGCCC				4q13	PREDICTED: Rattus norvegicus similar to coiled-coil-helix-coiled-coil-helix domain containing 2 (LOC502729), mRNA.					
Rattus norvegicus	RefSeq	GI_62639027-S	ILMN_56550	LOC502300	XM_577764.1	XM_577764.1		502300	62639027	XM_577764.1	LOC502300	XP_577764.1	ILMN_1349141	0006290053	S	1082	CTGTGGAAGTCCAGCCGGCCAGTCCCCGAGTGTCATCTACACAGAACTGT				1q21	PREDICTED: Rattus norvegicus similar to chromosome 6 open reading frame 148 (LOC502300), mRNA.					
Rattus norvegicus	RefSeq	GI_62656905-S	ILMN_54205	COPZ2_PREDICTED	XM_340887.2	XM_340887.2		360611	62656905	XM_340887.2	Copz2_predicted	XP_340888.2	ILMN_1366068	0003120091	S	465	CATGGACAGTGGCCTTAAGAGCCCACATCCTGGTTGGGAAGGACAGCCAT				10q31	PREDICTED: Rattus norvegicus coatomer protein complex, subunit zeta 2 (predicted) (Copz2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659790-S	ILMN_301506	RGD1565309_PREDICTED	XM_573520.1	XM_573520.1		498292	62659790	XM_573520.1	RGD1565309_predicted	XP_573520.1	ILMN_1361514	0002970402	S	252	CCCAATCAACATCAACGACATGCAGGAAGATGAACGGCTCCTGACTGTGG	13	+	93754765-93754783:93756267-93756297	13q25	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33370 (predicted) (RGD1565309_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660716-S	ILMN_51278	ZCWCC1_PREDICTED	XM_214072.4	XM_214072.4		289736	109499935	XM_214072.4	Zcwcc1_predicted	XP_214072.3	ILMN_1363145	0006450156	S	6310	TGAGGGAACTGCACACGTGGCTGGAAGTGCCTGCTTGAGCTCTGCCATCA	14	+	84336439-84336488	14q21	PREDICTED: Rattus norvegicus zinc finger, CW-type with coiled-coil domain 1 (predicted) (Zcwcc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56606091-S	ILMN_55858	ESRRB	NM_001008516.1	NM_001008516.1		299210	56606091	NM_001008516.1	Esrrb	NP_001008516.1	ILMN_1372917	0000540121	S	2244	TCCCCTTCCCTGCTTCCTGCTCAAGAAAAGGTAACTCCAGGACATGTGGG				6q31	Rattus norvegicus estrogen-related receptor beta (Esrrb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The morphogenesis of trophectoderm cells [goid 1831] [evidence ISS]; The proliferation of cells in the trophectoderm [goid 1834] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Errb; Err2	Errb; Err2
Rattus norvegicus	RefSeq	GI_61097932-S	ILMN_277265	WBP4	NM_053766.1	NM_053766.1		114765	61097932	NM_053766.1	Wbp4	NP_446218.1	ILMN_1364720	0004150110	S	1429	GCTGCAGGCAGATGAGGCGTGTCCTTTCCAAGCTCCTGCTTCAAATACTG	15	-	61517469-61517518	15q12	Rattus norvegicus WW domain binding protein 4 (formin binding protein 21) (Wbp4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Fbp21	Fbp21
Rattus norvegicus	RefSeq	GI_18677750-S	ILMN_294639	PNMA1	NM_130820.1	NM_130820.1		170636	18677750	NM_130820.1	Pnma1	NP_570833.1	ILMN_1350331	0000580500	S	1742	GGAGTAAAGGCGGTTCATAGTGCTACAGTGATGCCAGCCCTCCTGGTGAC				6q31	Rattus norvegicus paraneoplastic antigen MA1 (Pnma1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MA1	MA1
Rattus norvegicus	RefSeq	GI_62651696-S	ILMN_263811	RGD1563255_PREDICTED	XM_001075721.1	XM_001075721.1		500789	109481532	XM_001075721.1	RGD1563255_predicted	XP_001075721.1	ILMN_1357280	0003610446	S	691	AGGGTGGACGACCTACTGGAGAGCTACATGGGCATCCGAGACCCCGAGCT				7q11	PREDICTED: Rattus norvegicus similar to PDZ-domain protein Gipc3 (predicted) (RGD1563255_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656278-S	ILMN_263836	RGD1563195_PREDICTED	XM_001078960.1	XM_001078960.1		287419	109491075	XM_001078960.1	RGD1563195_predicted	XP_001078960.1	ILMN_1371384	0003120592	S	733	GGCCCAGTTCTGAGAGGGGGAGTTTCTTTCTGCTGCCTCCCTGGATGTGA				10q24	PREDICTED: Rattus norvegicus similar to Ran-interacting protein MOG1 (predicted) (RGD1563195_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162321-S	ILMN_271241	DUOX2	NM_024141.1	NM_024141.1		79107	13162321	NM_024141.1	Duox2	NP_077055.1	ILMN_1351253	0001240239	S	5433	GTGTCACTGCGGTTTGGGTCATATGGAATGCACTTTCGATCTTGGCCTCC	3	-	109059539-109059588	3q35	Rattus norvegicus dual oxidase 2 (Duox2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence TAS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; The process by which the anatomical structures of the adenohypophysis are generated and organized. Morphogenesis pertains to the creation of form. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 48855] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss [goid 42335] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence ISS]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	Thox2	Thox2
Rattus norvegicus	RefSeq	GI_62642403-S	ILMN_284543	LDB1_PREDICTED	XM_001058773.1	XM_001058773.1		309447	109463947	XM_001058773.1	Ldb1_predicted	XP_001058773.1	ILMN_1349427	0003520400	S	1795	GCAGAGCCTTTTGGGGGAAGGGGGTACTCATGTGGATGCCTATATGGACC				1q54	PREDICTED: Rattus norvegicus LIM domain binding 1 (predicted) (Ldb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114325-S	ILMN_295478	TESSP6	NM_001008865.1	NM_001008865.1		408245	57114325	NM_001008865.1	Tessp6	NP_001008865.1	ILMN_1365138	0002940494	S	540	GATCCAGATGGGTGTGGTGAGCTGGAACTTTGGCTGTGGTCGTCGCCAAT	8	+	115245127-115245176	8q32	Rattus norvegicus testis-specific serine protease-6 (Tessp6), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078620-S	ILMN_274333	AKAP8L	NM_001013946.1	NM_001013946.1		299569	62078620	NM_001013946.1	Akap8l	NP_001013968.1	ILMN_1365699	0002320563	S	1968	GCTCGACGTAGAAGACGACGAGGAGGGCGGTGGGGGTCCTTAACCCTTAC	7	-	12889708-12889715:12889716-12889757	7q11	Rattus norvegicus A kinase (PRKA) anchor protein 8-like (Akap8l), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656192-S	ILMN_53406	LOC303202	XM_220535.3	XM_220535.3		303202	62656192	XM_220535.3	LOC303202	XP_220535.2	ILMN_1371184	0002190524	S	1751	CTCATTGTTCACTGCTATCTGACAAAGAGAATGTGGAAGCCACGGTGACC				10q22	PREDICTED: Rattus norvegicus similar to Related RAS viral (r-ras) oncogene homolog 2 (LOC303202), mRNA.					
Rattus norvegicus	RefSeq	GI_62649013-S	ILMN_288749	LOC682088	XM_001059793.1	XM_001059793.1		682088	109476540	XM_001059793.1	LOC682088	XP_001059793.1	ILMN_1370057	0005570519	S	302	GGCAGTGGGCAAAGGAGGTTCAGAGAAATCCTGCCCGAGACGAAGAAGGA					PREDICTED: Rattus norvegicus similar to CG8399-PA (LOC682088), mRNA.					
Rattus norvegicus	RefSeq	GI_62654100-S	ILMN_294411	RGD1307882_PREDICTED	XM_001065014.1	XM_001065014.1		315903	109485105	XM_001065014.1	RGD1307882_predicted	XP_001065014.1	ILMN_1360410	0002470632	S	2984	TGGTTCAAGGACACCTAAAAGGTCTAGGCGGTCCCGGTCTAGGTCCCCGA				8q31	PREDICTED: Rattus norvegicus similar to CG9346-PA (predicted), transcript variant 2 (RGD1307882_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646896-S	ILMN_294411	RGD1307882_PREDICTED	XM_001065014.1	XM_001065014.1		315903	109485105	XM_001065014.1	RGD1307882_predicted	XP_001065014.1	ILMN_1362078	0007000114	S	3784	GAGGGCTCGAGTGAGAGGGTACGGTGTGCATCTGTTACTGTAGTGCCTGG				8q31	PREDICTED: Rattus norvegicus similar to CG9346-PA (predicted), transcript variant 2 (RGD1307882_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664138-S	ILMN_65538	BRUNOL4_PREDICTED	XM_226107.3	XM_226107.3		307540	62664138	XM_226107.3	Brunol4_predicted	XP_226107.3	ILMN_1366044	0003360242	S	5363	ACTAGGAGGAGATGCTGCTGCCAACCGATCCTGGGGCTTTTCCAGCCCGT				18p12	PREDICTED: Rattus norvegicus bruno-like 4, RNA binding protein (Drosophila) (predicted) (Brunol4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654852	ILMN_55469	LOC367208	XM_346010.2	XM_346010.2		367208	62654852	XM_346010.2	LOC367208	XP_346011.2	ILMN_1651124	0004010446	S	994	CGGATGGCCGAGGCTGAGTCTCAGGGTCCCAATGTTGGCTCTAATTCATT					PREDICTED: Rattus norvegicus similar to ERC protein 2 (CAZ-associated structural protein 1) (CAST1) (Cast) (Cytomatrix protein p110) (LOC367208), mRNA.					
Rattus norvegicus	RefSeq	GI_6978756-S	ILMN_286907	ACE	NM_012544.1	NM_012544.1		24310	6978756	NM_012544.1	Ace	NP_036676.1	ILMN_1362259	0006770427	S	3666	GTCACAGAGAACAGGAGACATGGAGAGACACTGGGCTGGCCGGAGTACAC	10	+	95380794-95380843	10q32.1	Rattus norvegicus angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 (Ace), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 6518] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence TAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42447] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42447] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 43171] [evidence ISS]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence ISS]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IDA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence ISS]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence IDA]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence IEA]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence ISS]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence ISS]; Interacting selectively with a bradykinin receptor [goid 31711] [evidence ISS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]	Dcp1; StsRR92	Dcp1; StsRR92
Rattus norvegicus	RefSeq	GI_62650715-S	ILMN_50624	LOC366631	XM_345677.2	XM_345677.2		366631	62650715	XM_345677.2	LOC366631	XP_345678.2	ILMN_1367534	0004210402	S	2632	AGTTCCACAGGGCGGCACAAGTGTATGAACAGCTCTCCAGGCCTCCGAAG				6q23	PREDICTED: Rattus norvegicus similar to C14orf25 protein (LOC366631), mRNA.					
Rattus norvegicus	RefSeq	GI_62654808-S	ILMN_53225	PHF3_PREDICTED	XM_343548.3	XM_343548.3		363210	109485904	XM_343548.3	Phf3_predicted	XP_343549.3	ILMN_1365581	0006200195	S	6719	TGTAGAGGAGCGGCAAGAAAGCCGAGACTTCCCAGTCAGACCATCCTGAC	9	-	29465632-29465681	9q21	PREDICTED: Rattus norvegicus PHD finger protein 3 (predicted) (Phf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_60678267-S	ILMN_298764	ZFP422	NM_001012745.1	NM_001012745.1		360389	60678267	NM_001012745.1	Zfp422	NP_001012763.1	ILMN_1365482	0002100537	S	1973	GAAATGGGAATGGTTTATGTTGAATCATGCCAGTGGCCTCTTGGCGTTCC	4	-	152975537-152975586	4q42	Rattus norvegicus zinc finger protein 422 (Zfp422), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence NAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105332	MGC105332
Rattus norvegicus	RefSeq	GI_62661902-S	ILMN_67355	LOC364359	XM_344382.2	XM_344382.2		364359	62661902	XM_344382.2	LOC364359	XP_344383.2	ILMN_1361219	0004070672	S	1338	CAAAAACCTCAACCAGAGACAAAGGGGAAAGGCAAGCTCTTGGCCTCAGA					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha-chain precursor (VJC) (LOC364359), mRNA.					
Rattus norvegicus	RefSeq	GI_62644151-S	ILMN_61780	LOC499687	XM_575011.1	XM_575011.1		499687	62644151	XM_575011.1	LOC499687	XP_575011.1	ILMN_1350583	0006590121	S	313	CCACAGTCCATGTCATCACTGCCAATCAGAAGACTCTCAATGACATGGCC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC499687), mRNA.					
Rattus norvegicus	RefSeq	GI_47577270-S	ILMN_272027	OLR724	NM_001000573.1	NM_001000573.1		366115	47577270	NM_001000573.1	Olr724	NP_001000573.1	ILMN_1363314	0005670056	S	764	TGTATCTACGCCCAGTGACCACTCTGCCACTTGATAAAGGTGTTGCTGTC	3	-	74346924-74346973	3q24	Rattus norvegicus olfactory receptor 724 (Olr724), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr724; ratchr3-74244109-74243189_ORF	Olr724; ratchr3-74244109-74243189_ORF
Rattus norvegicus	RefSeq	GI_62657604-S	ILMN_58601	LOC498056	XM_579775.1	XM_579775.1		498056	62657604	XM_579775.1	LOC498056	XP_579775.1	ILMN_1372075	0002260086	S	216	GGATACGGTTCCAGGTATGGCTGTGGATACGGCTCTGGCTGCTGTAGCTA				11q11	PREDICTED: Rattus norvegicus LOC498056 (LOC498056), mRNA.					
Rattus norvegicus	RefSeq	GI_62645765-S	ILMN_270324	LOC691966	XM_001080417.1	XM_001080417.1		691966	109468733	XM_001080417.1	LOC691966	XP_001080417.1	ILMN_1362763	0001980463	S	757	GGCTATACCTCGTGCCCACTGGTGACTGGTTACAACCGTGTGATTCTTGC	3	+	109750734-109750783	3q35	PREDICTED: Rattus norvegicus similar to Sulfide:quinone oxidoreductase, mitochondrial precursor (LOC691966), mRNA.					
Rattus norvegicus	RefSeq	GI_62638646-S	ILMN_59965	LOC499044	XM_574326.1	XM_574326.1		499044	62638646	XM_574326.1	LOC499044	XP_574326.1	ILMN_1371305	0004780309	S	114	ACCCAGACATTGTCCTCCATGGTGCAGAGAGACAGTTCTACAATGGTGTC					PREDICTED: Rattus norvegicus similar to kinesin family member 25 (LOC499044), mRNA.					
Rattus norvegicus	RefSeq	GI_62078674-S	ILMN_281890	RNF190	NM_001013973.1	NM_001013973.1		303596	62078674	NM_001013973.1	Rnf190	NP_001013995.1	ILMN_1363407	0003940097	S	2737	GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTTTGGGGGTCTGGC	10	-	94762900-94762949	10q32.1	Rattus norvegicus ring finger protein 190 (Rnf190), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1311692	RGD1311692
Rattus norvegicus	RefSeq	GI_62641306-S	ILMN_278254	CD2BP2_PREDICTED	XM_001078400.1	XM_001078400.1		293505	109462890	XM_001078400.1	Cd2bp2_predicted	XP_001078400.1	ILMN_1350911	0004760717	S	2946	CAGAGAACTGAAAGCTGGAAGAGAGGAGTATGTGTCAGGGTGCCGGTGGC				1q36	PREDICTED: Rattus norvegicus CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) (Cd2bp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424235-A	ILMN_299052	CDA08	NM_133557.1	NM_133557.1		171083	19424235	NM_133557.1	Cda08	NP_598241.1	ILMN_1376361	0000110279	S	3021	GCTCGCAGGACGGGAAAGTCAGTCTCAGTTCTCTTCAGACCACAGGGTTC	19	+	22682645-22682694	19q11	Rattus norvegicus T-cell immunomodulatory protein (Cda08), mRNA.				MGC93216	MGC93216
Rattus norvegicus	RefSeq	GI_62639686-S	ILMN_271359	AP2A1_PREDICTED	XM_001078388.1	XM_001078388.1		308578	109461872	XM_001078388.1	Ap2a1_predicted	XP_001078388.1	ILMN_1349027	0005670471	S	2970	GTGTCTGCTTCGACTGGAGCCCAATGCCCAGGCCCAAATGTACCGCCTAA				1q22	PREDICTED: Rattus norvegicus adaptor protein complex AP-2, alpha 1 subunit (predicted), transcript variant 5 (Ap2a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656639-S	ILMN_60819	RGD1310429_PREDICTED	XM_221232.4	XM_221232.4		303764	109488648	XM_221232.4	RGD1310429_predicted	XP_221232.4	ILMN_1349602	0002970687	S	1629	CTAGCGAGGTGTGCTGCTGCCTGTAATCCCAGCTAATCAGGAGGTTGGGC	10	-	68587300-68587349	10q26	PREDICTED: Rattus norvegicus similar to Protein Njmu-R1 (predicted) (RGD1310429_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660940-S	ILMN_65881	RGD1308179_PREDICTED	XM_214117.3	XM_214117.3		289864	109500136	XM_214117.3	RGD1308179_predicted	XP_214117.1	ILMN_1361602	0005690215	S	570	ACACCTGATGTGCCTGGGATGCGGGTGGGGGAATACCTAGAGGGGGTTCT	14	-	110531275-110531324	14q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010316F05 (predicted) (RGD1308179_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666418-S	ILMN_272270	MCTS1	XM_001064848.1	XM_001064848.1		302500	109512547	XM_001064848.1	Mcts1	XP_001064848.1	ILMN_1353519	0004760593	S	450	GGCAGAAGGAAAACAACATGCTTTATGTGTGGGCGTCATGAAGATGTCTG				Xq11	PREDICTED: Rattus norvegicus malignant T cell amplified sequence 1 (Mcts1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639093-S	ILMN_264545	DMPK_PREDICTED	XM_001066025.1	XM_001066025.1		308405	109461298	XM_001066025.1	Dmpk_predicted	XP_001066025.1	ILMN_1360838	0002470341	S	2535	CAGACTCCGGGACCCACGTTTTGGATGCACTGAGACTCGACATTCCTCGG				1q21	PREDICTED: Rattus norvegicus dystrophia myotonica-protein kinase (predicted) (Dmpk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667130-S	ILMN_283533	RGD1565165_PREDICTED	XR_007875.1	XR_007875.1		501604	109512225	XR_007875.1	RGD1565165_predicted		ILMN_1350119	0000360309	S	515	CCCTATTGAGCTGGTGGTTTTCCCGTTTGCCCTTTGTCGAAAGTTGGGGG				Xq31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1565165_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881181-S	ILMN_283533	RGD1565165_PREDICTED	XR_007875.1	XR_007875.1		501604	109512225	XR_007875.1	RGD1565165_predicted		ILMN_1350303	0005690068	S	69	CCGGTCCCCGCCGTGGTTAAGAAACAGGAGGCCAAAATGGTGGTCAATCC				Xq31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1565165_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718852-S	ILMN_69504	LOC501499	XM_576900.1	XM_576900.1		501499	62718852	XM_576900.1	LOC501499	XP_576900.1	ILMN_1358560	0007100576	S	495	GGACACACAAAAACTTGTGAGAGGAGCACCTCTAGGTCAAGAAGGGGAAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC501499), mRNA.					
Rattus norvegicus	RefSeq	GI_62718354-S	ILMN_55273	LOC363397	XM_343727.2	XM_343727.2		363397	62718354	XM_343727.2	LOC363397	XP_343728.2	ILMN_1356940	0001190435	S	674	GGCTGGGGTAGTACAAGACATAGCCTGAGTTCATATAATCCTAAACCTCG					PREDICTED: Rattus norvegicus hypothetical LOC363397 (LOC363397), mRNA.					
Rattus norvegicus	RefSeq	GI_19924040-S	ILMN_267631	CYP2D22	NM_138515.1	NM_138515.1		171522	19924040	NM_138515.1	Cyp2d22	NP_612524.1	ILMN_1371993	0003710066	S	2341	GGCCCATGCACAGTAAGAAAGTGACTCTAACCAGGGATGGAAGGACCCGC	7	-	120741641-120741690	7q34	Rattus norvegicus cytochrome P450, family 2, subfamily d, polypeptide 22 (Cyp2d22), mRNA.				Cyp2d18; Cyp2d4	Cyp2d18; Cyp2d4
Rattus norvegicus	RefSeq	GI_62660422-S	ILMN_277885	KCTD8_PREDICTED	XM_001070098.1	XM_001070098.1		364148	109500481	XM_001070098.1	Kctd8_predicted	XP_001070098.1	ILMN_1356009	0002470403	S	1901	GGCTGGTGTGATTCTTGCTGCTCTTCCTTTCTGTGAACAGTGGATGTGGG				14p11	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 8 (predicted) (Kctd8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662751-S	ILMN_59833	LOC498641	XM_579842.1	XM_579842.1		498641	62662751	XM_579842.1	LOC498641	XP_579842.1	ILMN_1367202	0002360402	S	1163	GTGTGACAATACTAAGAAGCGACAGACCCTTAGGAGACAGAGCCCGCAGC					PREDICTED: Rattus norvegicus LOC498641 (LOC498641), mRNA.					
Rattus norvegicus	RefSeq	GI_62659959-S	ILMN_264644	ANGEL2_PREDICTED	XM_001068063.1	XM_001068063.1		305035	109499282	XM_001068063.1	Angel2_predicted	XP_001068063.1	ILMN_1352343	0005690619	S	3137	GGCGGCCCACAGTTTTCAGTAGTACTTTGTGGGGTGCTACAGGTCCTGGT				13q27	PREDICTED: Rattus norvegicus angel homolog 2 (Drosophila) (predicted) (Angel2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643195-S	ILMN_296951	PTPNS1L3_PREDICTED	XM_001067522.1	XM_001067522.1		310213	109514152	XM_001067522.1	Ptpns1l3_predicted	XP_001067522.1	ILMN_1373309	0002480358	S	528	TGTGGGGCCCATCAGGTGGTTCAGGGGTGTAAAACACAGTAGACAGCTGA					PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type substrate 1-like 3 (predicted) (Ptpns1l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928841-S	ILMN_283650	ZFP148	NM_031615.1	NM_031615.1		58820	13928841	NM_031615.1	Zfp148	NP_113803.1	ILMN_1363968	0003450044	S	2435	CACAGCACCCATTTCCCTTTTCAGGTGACGAGACAAACCACGCCTCTGCC	11	-	69103960-69104009	11q22	Rattus norvegicus zinc finger protein 148 (Zfp148), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zbp-89; Znf148	Zbp-89; Znf148
Rattus norvegicus	RefSeq	GI_34875483-S	ILMN_270411	RGD1564676_PREDICTED	XM_344589.1	XM_344589.1		364700	34875483	XM_344589.1	RGD1564676_predicted	XP_344590.1	ILMN_1374397	0002850300	S	859	GACCCGTGTACCTGTGACTGTGAGCACCCGTGTACCTGTGACTGTGAGCA	17	-	35281852-35281901	17p12	PREDICTED: Rattus norvegicus similar to NF-X1 type zinc finger containing protein (2J511) (predicted) (RGD1564676_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665910-S	ILMN_49227	RHOBTB1_PREDICTED	XM_228131.4	XM_228131.4		309722	109509381	XM_228131.4	Rhobtb1_predicted	XP_228131.4	ILMN_1355346	0003450132	S	2051	AGCACCATTCGAGGAGAAAGTGGTGTTTCTGGCATCCGTCCCCAGCCGTG	20	-	20091922-20091971	20p11	PREDICTED: Rattus norvegicus Rho-related BTB domain containing 1 (predicted) (Rhobtb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377503-S	ILMN_288473	ZFP36	NM_133290.2	NM_133290.2		79426	31377503	NM_133290.2	Zfp36	NP_579824.1	ILMN_1357208	0004670671	S	1456	CCCCGAAGTTCAGTGTCCGGTGGTTGTAGCCTCTCCTGAGAATCCTGGTG	1	-	83486933-83486982	1q21	Rattus norvegicus zinc finger protein 36 (Zfp36), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps: poly(A) tail shortening, deadenylylation-dependent decapping, and decay of the transcript body, and that can regulate mRNA stability [goid 288] [evidence ISS]; Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length [goid 289] [evidence IEA]; Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length [goid 289] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 6402] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 6402] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence IEA]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid cell differentiation [goid 45638] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid cell differentiation [goid 45638] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that decreases the stability of an RNA molecule, making it more vulnerable to degradative processes [goid 50779] [evidence IEA]; Any process that decreases the stability of an RNA molecule, making it more vulnerable to degradative processes [goid 50779] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tis11	Tis11
Rattus norvegicus	RefSeq	GI_31324559-S	ILMN_291112	GPR109A	NM_181476.1	NM_181476.1		353250	31324559	NM_181476.1	Gpr109a	NP_852141.1	ILMN_1350738	0002680044	S	935	GGAAAACCTTGGGCGAACCAGATAATAACCGGAGCACGAGTGTGGAGCTC	12	+	33864810-33864859	12q15	Rattus norvegicus G protein-coupled receptor 109A (Gpr109a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	Hm74b; Pumag; Hm74; Gpr109b; rHM74b	Hm74b; Pumag; Hm74; Gpr109b; rHM74b
Rattus norvegicus	RefSeq	GI_62638349-A	ILMN_301012	TAAR5	NM_001009650.1	NM_001009650.1		294123	57526987	NM_001009650.1	Taar5	NP_001009650.1	ILMN_1376632	0001340706	S	774	GGGCATCTACCTTGTGTGTTGGCTTCCCTTCACTGTGGACACGCTGGTGG	1	-	21997182-21997231	1p12	Rattus norvegicus trace amine associated receptor 5 (Taar5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56606097-S	ILMN_276321	C1QC	NM_001008524.1	NM_001008524.1		362634	56606097	NM_001008524.1	C1qc	NP_001008524.1	ILMN_1359739	0001450706	S	686	GTCAACGACTACAACGGCATGGTGGGCACTGAGGGCTCTGACAGCGTCTT	5	-	155656397-155656446	5q36	Rattus norvegicus complement component 1, q subcomponent, C chain (C1qc), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC105681	MGC105681
Rattus norvegicus	RefSeq	GI_62652878-S	ILMN_68547	FBLN1_PREDICTED	XM_243637.4	XM_243637.4		315191	109481119	XM_243637.4	Fbln1_predicted	XP_243637.3	ILMN_1370719	0006130082	S	2667	ACCAACTGGGCTCTGTGTGCTTCAAACTGATGGCTGCTGTAGAGCGGTGC	7	+	123287205-123287254	7q34	PREDICTED: Rattus norvegicus fibulin 1 (predicted) (Fbln1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577284-S	ILMN_282508	OLR402	NM_001001014.1	NM_001001014.1		405388	47577284	NM_001001014.1	Olr402	NP_001001014.1	ILMN_1369222	0002570722	S	543	CTCTGCTATGCTGAAGTTGTCCAGCTCAGACACTACCATCAATGAGTTGC	3	+	16001730-16001779	3p11	Rattus norvegicus olfactory receptor 402 (Olr402), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr402	Olr402
Rattus norvegicus	RefSeq	GI_62717918-S	ILMN_263167	LOC367402	XR_007623.1	XR_007623.1		367402	109486519	XR_007623.1	LOC367402		ILMN_1371463	0006520242	S	463	ATTCCCATTCAGGGAGATTCCAGCAGATGGCCGATGACCTACCCGAGAGT					PREDICTED: Rattus norvegicus similar to muscle protein684 (LOC367402), mRNA.					
Rattus norvegicus	RefSeq	GI_62664656-S	ILMN_53168	RGD1563090_PREDICTED	XM_225698.4	XM_225698.4		307248	109506822	XM_225698.4	RGD1563090_predicted	XP_225698.4	ILMN_1363359	0004150040	S	1471	TCTGGATTCTGAGTGTTGGCTTGAGCAGGGGTGCAGAGGATGGTGCCAGT	18	+	74838199-74838248	18q12.3	PREDICTED: Rattus norvegicus similar to macrophage actin-associated-tyrosine-phosphorylated protein (predicted) (RGD1563090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928807-S	ILMN_268136	PSMC3	NM_031595.1	NM_031595.1		29677	13928807	NM_031595.1	Psmc3	NP_113783.1	ILMN_1352134	0004230040	S	1554	CTAGGGACACCTCTAGTCTGTCTGCTGGGGCGGGGGCTCGGTTGATAATA	3	+	75418876-75418879:75418880-75418925	3q24	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase 3 (Psmc3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence IEA]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577572-S	ILMN_277756	OLR665	NM_001000634.1	NM_001000634.1		404827	47577572	NM_001000634.1	Olr665	NP_001000634.1	ILMN_1374958	0004010551	S	12	GAGCTTTGTCACTGAGTTCTTACTCCTGGGACTTTCACAGAATCCAAAGG	3	-	73113787-73113836	3q24	Rattus norvegicus olfactory receptor 665 (Olr665), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr665	Olr665
Rattus norvegicus	RefSeq	GI_62649288-S	ILMN_271102	RGD1559469_PREDICTED	XM_001056577.1	XM_001056577.1		362550	109476789	XM_001056577.1	RGD1559469_predicted	XP_001056577.1	ILMN_1368082	0002030446	S	3177	CGTTCCTTTGCTACCCCACATGTCAATCCCAAATCACCCCGGTGGAATGG				5q33	PREDICTED: Rattus norvegicus similar to Tyrosine-protein kinase transmembrane receptor ROR1 precursor (Neurotrophic tyrosine kinase, receptor-related 1) (predicted) (RGD1559469_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643094-S	ILMN_53910	LOC499553	XM_574878.1	XM_574878.1		499553	62643094	XM_574878.1	LOC499553	XP_574878.1	ILMN_1366360	0002260397	S	691	CAGTGCATAGTGGACAAGAAAGTGGCAGTGGAAGTGCGGCAGTCTTCAGC					PREDICTED: Rattus norvegicus similar to heterogeneous nuclear ribonucleoprotein A3 (LOC499553), mRNA.					
Rattus norvegicus	RefSeq	GI_47575914-S	ILMN_287298	OLR1468	NM_001000724.1	NM_001000724.1		404977	47575914	NM_001000724.1	Olr1468	NP_001000724.1	ILMN_1363969	0002850091	S	477	CACCCTGCTCATGGCCAGATTGTCATTCTGTGCGGACAATATGATCCCCC	10	-	60268359-60268408	10q24	Rattus norvegicus olfactory receptor 1468 (Olr1468), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648392-S	ILMN_66411	EMG1_PREDICTED	XM_232345.4	XM_232345.4		312706	109472566	XM_232345.4	Emg1_predicted	XP_232345.1	ILMN_1374749	0006980332	S	694	GTTGGTGCCCAGTAGTGACCCAGTTGTTTTCGTAGTGGGGGCCTTTGCCC	4	-	160828334-160828383	4q42	PREDICTED: Rattus norvegicus EMG1 nucleolar protein homolog (S. cerevisiae) (predicted) (Emg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560005	ILMN_58251	GULO	NM_022220.2	NM_022220.2		60671	60097942	NM_022220.2	Gulo	NP_071556.2	ILMN_1650104	0003830138	S	1040	CACTACCCCGTAGAGGTGCGCTTCACCCGAGGCGATGACATTCTGCTGAG	15	-	45412174-45412191:45413957-45413988	15p12	Rattus norvegicus gulonolactone (L-) oxidase (Gulo), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence IEA]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence TAS]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: D-arabinono-1,4-lactone + O2 = D-erythro-ascorbate + H2O2 [goid 3885] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: L-gulono-1,4-lactone + O2 = L-xylo-hex-3-ulonolactone + H2O2 [goid 50105] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394154-S	ILMN_66090	PRF1	NM_017330.2	NM_017330.2		50669	59709458	NM_017330.2	Prf1	NP_059026.2	ILMN_1650856	0001820678	S	1480	CCTCAGGGTGCAGGTCTGGGATGCTGACAATGGCTGGGATGATGACCTTC	20	+	28663414-28663463	20q11	Rattus norvegicus perforin 1 (pore forming protein) (Prf1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]	Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IMP]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence TAS]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Cyta; RATCYTA; MGC108712	Cyta; RATCYTA; MGC108712
Rattus norvegicus	RefSeq	GI_62656060-S	ILMN_69271	AFF4_PREDICTED	XM_220420.4	XM_220420.4		303132	109488090	XM_220420.4	Aff4_predicted	XP_220420.2	ILMN_1371918	0001410079	S	3784	AGATCTGGCTCGTTACACCCGGCAGGGACTGCATTGGCTTCGGCAGGATG	10	+	38876686-38876735	10q22	PREDICTED: Rattus norvegicus AF4/FMR2 family, member 4 (predicted) (Aff4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21489998-S	ILMN_55236	TOR1AIP1	NM_145092.2	NM_145092.2		246314	77539437	NM_145092.2	Tor1aip1	NP_659560.2	ILMN_1350654	0001580014	S	2408	AACTGGGTGTGCAGTTTAGCCAGCCCCTCCCCCACTGGTTTGTAGAGAGG	13	-	71043093-71043142	13q21	Rattus norvegicus torsin A interacting protein 1 (Tor1aip1), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope [goid 5521] [evidence IDA]	Lap1c; MGC93149; Lap1b	Lap1c; MGC93149; Lap1b
Rattus norvegicus	RefSeq	GI_62651404-S	ILMN_281865	RGD1306493_PREDICTED	XM_001061189.1	XM_001061189.1		314523	109480071	XM_001061189.1	RGD1306493_predicted	XP_001061189.1	ILMN_1365817	0001090164	S	3412	GATAAGCTTGTGGCCATGACTATCGTGGGGGAACCCGAGAAGACCAGTGG				6q33	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10300 (predicted) (RGD1306493_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41152497-S	ILMN_301656	TTPA	NM_013048.2	NM_013048.2		25571	41152497	NM_013048.2	Ttpa	NP_037180.1	ILMN_1359577	0004200711	S	1689	CGGCAGCTGGGATGTGCAGTCTCTACCATAGTGCAGTTCATTTCTAAGAC	5	+	34658652-34658701	5q21	Rattus norvegicus tocopherol (alpha) transfer protein (Ttpa), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition [goid 32502] [evidence IEP]; The chemical reactions and pathways involving vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant [goid 42360] [evidence IDA]; The chemical reactions and pathways involving vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant [goid 42360] [evidence IEA]; The chemical reactions and pathways involving vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant [goid 42360] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant [goid 8431] [evidence IDA]; Interacting selectively with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body [goid 19842] [evidence IDA]	TTP	TTP
Rattus norvegicus	RefSeq	GI_62648358-S	ILMN_64888	LOC502874	XM_578375.1	XM_578375.1		502874	62648358	XM_578375.1	LOC502874	XP_578375.1	ILMN_1357211	0000520605	S	92	AATCTCGGACTTTCTCAACTCTTTCGGTCAGCGGGCGAGCAGGGGAGGCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6720456B07 (LOC502874), mRNA.					
Rattus norvegicus	RefSeq	GI_47576638-S	ILMN_289738	OLR1684	NM_001000270.1	NM_001000270.1		294151	47576638	NM_001000270.1	Olr1684	NP_001000270.1	ILMN_1359154	0001780463	S	561	CTCCAGTGCAGATACTACCTACAACGAAGTCCAGATGTCCGTAGCGAGTG	20	+	351269-351318	20p12	Rattus norvegicus olfactory receptor 1684 (Olr1684), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr20-350709-351650_ORF; Olr1684	ratchr20-350709-351650_ORF; Olr1684
Rattus norvegicus	RefSeq	GI_62646048-S	ILMN_65760	RGD1563415_PREDICTED	XM_575261.2	XM_575261.2		499918	109469009	XM_575261.2	RGD1563415_predicted	XP_575261.2	ILMN_1358141	0001770368	S	937	AGGCAGAAGAACCGGAAGGATCGGCGCCAGCGCAAGGACAGGAAGTTGGA	3	+	142215687-142215736	3q41	PREDICTED: Rattus norvegicus similar to OTTHUMP00000029946 (predicted) (RGD1563415_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646934	ILMN_65495	RGD1559885_PREDICTED	XM_575414.2	XM_575414.2		500059	109471838	XM_575414.2	RGD1559885_predicted	XP_575414.2	ILMN_1650233	0006860746	S	2606	AGCGCATCATCGGGCTCTCTGTGTGGACTCTCACGGGACAGCTCATCCAT	4	-	56040207-56040256	4q22	PREDICTED: Rattus norvegicus similar to hypothetical gene supported by BC063892 (predicted) (RGD1559885_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653683-S	ILMN_301951	ELMOD1_PREDICTED	XR_008801.1	XR_008801.1		315670	109484715	XR_008801.1	Elmod1_predicted		ILMN_1369966	0002350465	S	2232	GGGATTGAGTGCTGACTGCTTTGTTTCTATCTTGGGGGTGGGGAGGCAAT				8q24	PREDICTED: Rattus norvegicus ELMO domain containing 1 (predicted) (Elmod1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645657-S	ILMN_69325	RGD1305647_PREDICTED	XM_230497.4	XM_230497.4		311350	109468707	XM_230497.4	RGD1305647_predicted	XP_230497.3	ILMN_1356873	0002510014	S	2376	GCCCCAGTGGCAGATGGGAAAGCCAGTATCAGTGGGTGAGCTTCAGGAAG	3	+	107786103-107786152	3q35	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23375 (predicted) (RGD1305647_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663599-S	ILMN_58614	HIST1H2AN_PREDICTED	XM_225386.2	XM_225386.2		306970	62663599	XM_225386.2	Hist1h2an_predicted	XP_225386.2	ILMN_1349810	0006110739	S	407	GTTTGGCTGTGTGGACAGATGGACAGATGGACAGATGGCTGGAGCTTGGC				17q11	PREDICTED: Rattus norvegicus histone 1, H2an (predicted) (Hist1h2an_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664845-S	ILMN_64571	LOC291814	XM_226241.3	XM_226241.3		291814	62664845	XM_226241.3	LOC291814	XP_226241.3	ILMN_1371951	0005890026	S	1780	GTGCCCTATGTGAAGAATGGAGCTCTAACTGGGAGATAAGGCTTGGAGTC				19p14	PREDICTED: Rattus norvegicus similar to Carboxylesterase 2 (LOC291814), mRNA.					
Rattus norvegicus	RefSeq	GI_47577668-S	ILMN_277653	OLR561	NM_001000511.1	NM_001000511.1		311173	47577668	NM_001000511.1	Olr561	NP_001000511.1	ILMN_1353065	0000520706	S	723	GTCATCAGCCAAAGGAAGGACCAAAGCTTTCTCCACCTGCTCCTCTCACC	3	+	71056911-71056960	3q24	Rattus norvegicus olfactory receptor 561 (Olr561), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr561; ratchr3-70952561-70953532_ORF	Olr561; ratchr3-70952561-70953532_ORF
Rattus norvegicus	RefSeq	GI_62646239-S	ILMN_301236	CTNNBL1	NM_001024870.1	NM_001024870.1		296320	67846017	NM_001024870.1	Ctnnbl1	NP_001020041.1	ILMN_1373746	0006100735	S	1642	GCACATCATCAAGGAGTACGCAGAGAACATTGGAGATGGCCGGAGCCCTG	3	+	148595453-148595466:148602192-148602227	3q42	Rattus norvegicus catenin, beta like 1 (Ctnnbl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_17978452-S	ILMN_263393	APBB1	NM_080478.1	NM_080478.1		29722	17978452	NM_080478.1	Apbb1	NP_536726.1	ILMN_1361205	0001570446	S	2422	CATCCTCAAAGGCCCAATAAGGGCAGGAGGGGACTGGTCTCGGCATGGAT	1	-	163282983-163283032	1q33	Rattus norvegicus amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (Apbb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of S phase of mitotic cell cycle activity [goid 45749] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase [goid 50760] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of S phase of mitotic cell cycle activity [goid 45749] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase [goid 50760] [evidence ISS]	Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]	FE65	FE65
Rattus norvegicus	RefSeq	GI_62661876-S	ILMN_65884	LOC290170	XM_224131.3	XM_224131.3		290170	62661876	XM_224131.3	LOC290170	XP_224131.3	ILMN_1361077	0000940538	S	674	CTCTCAGCCAGAGGATTCGGGGAAATCTCCACTTGTTCACCTCATCCTTC				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC290170), mRNA.					
Rattus norvegicus	RefSeq	GI_50054383-S	ILMN_264836	CSF1	NM_023981.4	NM_023981.4		78965	50054383	NM_023981.4	Csf1	NP_076471.3	ILMN_1363245	0002760050	S	3719	TGGGTGCCTGGTTGCATAAGAGCAGGAGGAGCCCCAAACCCACCTTTGGA				2q34	Rattus norvegicus colony stimulating factor 1 (macrophage) (Csf1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IMP]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence TAS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence IEP]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence IMP]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42488] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of monocyte differentiation [goid 45657] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_47576102-S	ILMN_264762	OLR139	NM_001000161.1	NM_001000161.1		293278	47576102	NM_001000161.1	Olr139	NP_001000161.1	ILMN_1359029	0001770039	S	678	TGTCCTGAACACAGCCACTTGGGCTGATCGACTCCGGGCTCTCAACAACT	1	+	161826585-161826634	1q32	Rattus norvegicus olfactory receptor 139 (Olr139), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr139; ratchr1-161918847-161919794_ORF	Olr139; ratchr1-161918847-161919794_ORF
Rattus norvegicus	RefSeq	GI_62664572	ILMN_270416	LOC307347	XR_005455.1	XR_005455.1		307347	109506737	XR_005455.1	LOC307347		ILMN_1650160	0004050288	S	9856	TATCCACATCCCGGTGCACTTCAGGCCAGAGACGGTGGGCAGATTCGAAG	18	+	64439224-64439273	18q12.1	PREDICTED: Rattus norvegicus hypothetical protein LOC307347 (LOC307347), misc RNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664570	ILMN_270416	LOC307347	XR_005455.1	XR_005455.1		307347	109506737	XR_005455.1	LOC307347		ILMN_1650327	0001450441	S	8125	CACTGGCTCCAGAGCTGCCTTCGTTAGAGCAGTGGGCTTTAAAGGTTCTC	18	+	64410692-64410741	18q12.1	PREDICTED: Rattus norvegicus hypothetical protein LOC307347 (LOC307347), misc RNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651442-S	ILMN_291453	FOS	NM_022197.1	NM_022197.1		314322	63147419	NM_022197.1	Fos	NP_071533.1	ILMN_1368356	0001190154	S	942	GATGACTTCTTGTTTCCGGCATCATCTAGGCCCAGTGGCTCGGAGACTGC	6	+	109561373-109561422	6q31	Rattus norvegicus FBJ murine osteosarcoma viral oncogene homolog (Fos), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]	A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus [goid 1661] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus [goid 9629] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 34614] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	c-fos	c-fos
Rattus norvegicus	RefSeq	GI_62641260-S	ILMN_281194	NSMCE1	NM_001039611.1	NM_001039611.1		361645	88853862	NM_001039611.1	Nsmce1	NP_001034700.1	ILMN_1353905	0004560603	S	717	TGTGCAGAGCAAGTGGCTGATTGAGAAGGAGGGGGAGTTCACCTTGCATG	1	-	184529858-184529883:184533069-184533092	1q36	Rattus norvegicus non-SMC element 1 homolog (S. cerevisiae) (Nsmce1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124662	MGC124662
Rattus norvegicus	RefSeq	GI_47575970-S	ILMN_296095	OLR1509	NM_001000528.1	NM_001000528.1		363642	47575970	NM_001000528.1	Olr1509	NP_001000528.1	ILMN_1363175	0006200075	S	879	CAGTCTTAGAAACCCTGATGTGCAGGGTGCCCTACGGAAGGTGCTCACAG	10	-	61385745-61385794	10q24	Rattus norvegicus olfactory receptor 1509 (Olr1509), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1509	Olr1509
Rattus norvegicus	RefSeq	GI_16758897-S	ILMN_291583	NLGN2	NM_053992.1	NM_053992.1		117096	16758897	NM_053992.1	Nlgn2	NP_446444.1	ILMN_1365568	0000730181	S	3850	CTTGCATGTGGATGTGTGTTTCCCAGGCAGAGGGTCCTGCGTTCCTCAGG				10q24	Rattus norvegicus neuroligin 2 (Nlgn2), mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [pmid 15681343] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21326476-S	ILMN_271356	RIPK3	NM_139342.1	NM_139342.1		246240	21326476	NM_139342.1	Ripk3	NP_647558.1	ILMN_1354240	0005220176	S	1716	CAGCAATCCTTGGTACACCTGGAACGCACCAAACCCAATGACAGGCCTAC	15	-	33947642-33947648:33948156-33948198	15p13	Rattus norvegicus receptor-interacting serine-threonine kinase 3 (Ripk3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA];  [goid 4704] [evidence ISS];  [goid 4704] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Hcyp2	Hcyp2
Rattus norvegicus	RefSeq	GI_62646907-S	ILMN_64265	WNT16	XM_575403.2	XM_575403.2		500047	109471782	XM_575403.2	Wnt16	XP_575403.1	ILMN_1370772	0001740167	S	1321	CGTCCGCTGCAGGAGGTGTGAAAGCATGACCGATGTCCACACTTGTAAGT	4	+	48619980-48620029	4q22	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 16 (Wnt16), mRNA.					
Rattus norvegicus	RefSeq	GI_34871709	ILMN_64913	LOC360786	XM_346917.1	XM_346917.1		360786	34871709	XM_346917.1	LOC360786	XP_346918.1	ILMN_1650830	0001170438	S	114	TTACAGGACACTCTCGGCCTGTTCCCACACACCCCCACTGCTCAGACTCT					PREDICTED: Rattus norvegicus hypothetical LOC360786 (LOC360786), mRNA.					
Rattus norvegicus	RefSeq	GI_27465634-S	ILMN_57266	GIMAP4	NM_173153.2	NM_173153.2		286938	76677904	NM_173153.2	Gimap4	NP_775176.2	ILMN_1353754	0006590364	S	1050	ATGCCGTACAGAGCTCACACCCATGACACACCCACTCCAACAGGGCTTTG	4	+	76784118-76784167	4q24	Rattus norvegicus GTPase, IMAP family member 4 (Gimap4), mRNA.			Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Ian1	Ian1
Rattus norvegicus	RefSeq	GI_62647810-S	ILMN_288363	GP9	NM_001031825.1	NM_001031825.1		502858	73532773	NM_001031825.1	Gp9	NP_001026995.1	ILMN_1373962	0000610047	S	455	CACCATCCTGGGCCTATTCAGGGATCTGGTGGGATGTGTCACTGGTGGCT	4	+	121967017-121967066	4q34	Rattus norvegicus glycoprotein IX (platelet) (Gp9), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding the platelet alpha granule [goid 31092] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_13929115-S	ILMN_282956	REST	NM_031788.1	NM_031788.1		83618	13929115	NM_031788.1	Rest	NP_113976.1	ILMN_1360568	0006510253	S	3022	CGGCCAGCACCACAGGAAGCTACGTCAAAAAGTGGAAAGGAAGGGTTGGC	14	-	33136225-33136274	14p11	Rattus norvegicus RE1-silencing transcription factor (Rest), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642921-S	ILMN_68022	LOC310091	XM_226760.3	XM_226760.3		310091	62642921	XM_226760.3	LOC310091	XP_226760.3	ILMN_1364506	0000770035	S	2761	CATGGACCGTTAGGAAGCCCAGTGGAGGAAGCCCAAGTGGAGCTGGGTAT				2q14	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ90709 (predicted) (LOC310091), mRNA.					
Rattus norvegicus	RefSeq	GI_57164046-S	ILMN_280018	V1RC42	NM_001009527.1	NM_001009527.1		494247	57164046	NM_001009527.1	V1rc42	NP_001009527.1	ILMN_1372826	0003120338	S	471	GAGGGTCACTAAGTTCTGCTCACACTTTCCCATGAACAGCATCATCAGGG	4	+	86953126-86953175	4q24	Rattus norvegicus vomeronasal 1 receptor, C42 (V1rc42), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718744-S	ILMN_57385	LOC503406	XM_580268.1	XM_580268.1		503406	62718744	XM_580268.1	LOC503406	XP_580268.1	ILMN_1358076	0001500750	S	147	CAGCCAAGTGAACATTTCGGGAAAGGAGGGGATTGTTACGGAGCGGTGCG					PREDICTED: Rattus norvegicus LOC503406 (LOC503406), mRNA.					
Rattus norvegicus	RefSeq	GI_62661207-S	ILMN_66722	LOC498482	XM_573740.1	XM_573740.1		498482	62661207	XM_573740.1	LOC498482	XP_573740.1	ILMN_1353617	0004200035	S	951	TGGGCTTAATTTGAAAGACCTTGAGATGTGGCATGGGACATGCCTCAACG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F09 (LOC498482), mRNA.					
Rattus norvegicus	RefSeq	GI_62641458-S	ILMN_64253	LOC502366	XM_577838.1	XM_577838.1		502366	62641458	XM_577838.1	LOC502366	XP_577838.1	ILMN_1352989	0006860433	S	340	TTGACTCCTCCCAGCTTCAGGCACTCTTTACTCAGACACACCCAGGGGGC					PREDICTED: Rattus norvegicus similar to reverse transcriptase homolog (LOC502366), mRNA.					
Rattus norvegicus	RefSeq	GI_62658925	ILMN_272434	OAS1F	NM_001009490.1	NM_001009490.1		494199	57222305	NM_001009490.1	Oas1f	NP_001009490.1	ILMN_1650646	0003780347	S	1083	GAGTTTCCACAGGAATGTGTCCTTCTATGAGCACCAAAGCACCTGCCCAG	12	-	36833919-36833939:36833940-36833968	12q16	Rattus norvegicus 2 ' -5 ' oligoadenylate synthetase 1F (Oas1f), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666384-S	ILMN_49474	LOC502485	XM_577966.1	XM_577966.1		502485	62666384	XM_577966.1	LOC502485	XP_577966.1	ILMN_1367478	0004200575	S	928	CTGCACAAGGCAAACGTGAGTTGGGGTACAGGAAGGCAAAGTGCCCTGAC					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502485), mRNA.					
Rattus norvegicus	RefSeq	GI_16758481-S	ILMN_280899	LEPRE1	NM_053667.1	NM_053667.1		114200	16758481	NM_053667.1	Lepre1	NP_446119.1	ILMN_1361231	0000460162	S	2333	ACAGCCTTCTTCATGGTGCTGCTGTTCTCGGAGGAGTGGGCATGGCAGGA	5	+	139831223-139831272	5q36	Rattus norvegicus leprecan 1 (Lepre1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence IEA]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-3-hydroxy-L-proline + succinate + CO2 [goid 19797] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Gros1	Gros1
Rattus norvegicus	RefSeq	GI_62643043-S	ILMN_262463	ADAMTS12_PREDICTED	XM_001059671.1	XM_001059671.1		294809	109466176	XM_001059671.1	Adamts12_predicted	XP_001059671.1	ILMN_1374283	0005700471	S	4877	CCATGAAGAAGTGCTCGGTGCCATCAGTACGAGTCCAGTGCTGTCTCTCG				2q16	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12 (predicted) (Adamts12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018259-S	ILMN_284903	GOLGA2	NM_022596.1	NM_022596.1		64528	12018259	NM_022596.1	Golga2	NP_072118.1	ILMN_1368568	0004120324	S	4169	CCCCTGTATCATAGTGGAGGTTGGAGCTGGCAAGTGGGACAGAGCTTCTA	3	+	11434079-11434128	3p11	Rattus norvegicus golgi autoantigen, golgin subfamily a, 2 (Golga2), mRNA.	The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER [goid 137] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Gm130	Gm130
Rattus norvegicus	RefSeq	GI_62718594-S	ILMN_47917	LOC503375	XM_580266.1	XM_580266.1		503375	62718594	XM_580266.1	LOC503375	XP_580266.1	ILMN_1350192	0006900347	S	1231	CAGCTGACATCGCCTTTTTGACGGCAGATGACCCAGCATTTGAAGATCCG					PREDICTED: Rattus norvegicus LOC503375 (LOC503375), mRNA.					
Rattus norvegicus	RefSeq	GI_19924090-S	ILMN_266082	GPSN2	NM_138549.1	NM_138549.1		191576	19924090	NM_138549.1	Gpsn2	NP_612558.1	ILMN_1366848	0004280450	S	490	CGACTTTACATCCAGTCGGCATACTGTGGTGCACCTCGCCTGCATGTGCC	19	+	26257883-26257915:26258055-26258071	19q11	Rattus norvegicus glycoprotein, synaptic 2 (Gpsn2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16627] [evidence IEA]	SC2	SC2
Rattus norvegicus	RefSeq	GI_62662136-S	ILMN_295001	GDF10	NM_024375.1	NM_024375.1		79216	13242276	NM_024375.1	Gdf10	NP_077351.1	ILMN_2039904	0004760681	A	1812	GAGCCACAGTTCTCCCGTTCTTCCGCGTCGTGGTAGCTCTGTAAGGACTT	16	+	9570263-9570312	16p16	Rattus norvegicus growth differentiation factor 10 (Gdf10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence IEP]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652913-S	ILMN_70385	PLXNB2	XM_243652.4	XM_243652.4		315217	109481134	XM_243652.4	Plxnb2	XP_243652.4	ILMN_1354034	0001500609	S	5341	GCAGGTCAGCGACCAGGACATGAATACACACTTGGCGGAGATTTCCCGGG	7	-	127458199-127458200:127458619-127458666	7q34	PREDICTED: Rattus norvegicus plexin B2 (Plxnb2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645375	ILMN_266587	AGBL2_PREDICTED	XM_001077842.1	XM_001077842.1		366124	109470296	XM_001077842.1	Agbl2_predicted	XP_001077842.1	ILMN_1650654	0005080497	S	2598	GCTCTCCAAAGAGAAGCACAAACTCCAGCCTAGGGCCAGCTCCAGATGCG				3q24	PREDICTED: Rattus norvegicus ATP/GTP binding protein-like 2 (predicted) (Agbl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654532-S	ILMN_61803	ZNF167_PREDICTED	XM_343509.3	XM_343509.3		363170	109484129	XM_343509.3	Znf167_predicted	XP_343510.3	ILMN_1370592	0000130131	S	1560	CAGTAAAGATGTAAGGGAACGTCCAGAATCGCCCTCCAGTCCTGCTGAGC	8	+	127605688-127605737	8q32	PREDICTED: Rattus norvegicus zinc finger protein 167 (predicted) (Znf167_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606348-S	ILMN_278315	OLR82	NM_001001282.1	NM_001001282.1		365328	47606348	NM_001001282.1	Olr82	NP_001001282.1	ILMN_1360483	0006180204	S	323	CTTGCTCGACCATGGAGTCTGGTTTCCTTGTAGGAATGGCCTTTGACCGT	1	-	160938512-160938561	1q32	Rattus norvegicus olfactory receptor 82 (Olr82), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr82	Olr82
Rattus norvegicus	RefSeq	GI_62638917-S	ILMN_50338	ZFP606_PREDICTED	XM_218283.3	XM_218283.3		292610	62638917	XM_218283.3	Zfp606_predicted	XP_218283.3	ILMN_1354814	0000610347	S	2544	GTGGTCTGAGGAACATGATTGGGTGAATGCAGTATTCTAGCAAAAGCTCT				1q21	PREDICTED: Rattus norvegicus zinc finger protein 606 (predicted) (Zfp606_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664386-S	ILMN_292711	LOC317165	XM_228401.3	XM_228401.3		317165	62664386	XM_228401.3	LOC317165	XP_228401.3	ILMN_1356061	0002810369	S	1322	CAGGAACCTGGTATGGATGTTTCCTGAGAGGCTCTAGCAGGGCCTTACTG	18	+	41082374-41082423	18q11	PREDICTED: Rattus norvegicus similar to Set alpha isoform (LOC317165), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_61889125-S	ILMN_53759	WDR23	NM_001009686.2	NM_001009686.2		305895	61889125	NM_001009686.2	Wdr23	NP_001009686.1	ILMN_1349106	0004810739	S	2360	CAGGGACGTGTTTCCTCAGCACCCTCTGGGGTAGGAACTGTGTCTGCTCT	15	+	33701095-33701144	15p13	Rattus norvegicus WD repeat domain 23 (Wdr23), mRNA.				MGC109419; MGC94719	MGC109419; MGC94719
Rattus norvegicus	RefSeq	GI_27705575-S	ILMN_271532	SOX18	NM_001024781.1	NM_001024781.1		311723	67078461	NM_001024781.1	Sox18	NP_001019952.1	ILMN_1348946	0005890735	S	998	TCTCTTGAGGGCACAGAGCAATTGGAGCCTACCGCCGACCTTTGGGCCGA	3	-	170821031-170821080	3q43	Rattus norvegicus SRY (sex determining region Y)-box 18 (Sox18), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655525-S	ILMN_275728	RGD1559882_PREDICTED	XM_001054365.1	XM_001054365.1		301709	109487629	XM_001054365.1	RGD1559882_predicted	XP_001054365.1	ILMN_1367006	0006110435	S	3297	GGGCCTCATCTTGGACTCCACAGGCTGAACACTGATGGACTTAACAGCGG				9q37	PREDICTED: Rattus norvegicus similar to hypothetical protein E130310N06 (predicted) (RGD1559882_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661452-S	ILMN_65450	PSMB5	XM_341314.3	XM_341314.3		29425	109501600	XM_341314.3	Psmb5	XP_341315.3	ILMN_1367028	0002690139	S	571	CTCTGGAACCGCCTTCTCAGTGGGATCTGGCTCCGTGTATGCGTTTGGAG	15	-	32690110-32690159	15p13	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 5 (Psmb5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657264-S	ILMN_263673	ARSG	XM_001081596.1	XM_001081596.1		303631	109492130	XM_001081596.1	Arsg	XP_001081596.1	ILMN_1360365	0000730195	S	1187	TTGGCAAGTCACAAACGGGGCACAGGGTACTGTTCCACCCCAACAGTGGG				10q32.1	PREDICTED: Rattus norvegicus arylsulfatase G (Arsg), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence ISS]; Catalysis of the reaction: CTP + dolichol = CDP + dolichyl phosphate [goid 4168] [evidence IEA]; Catalysis of the reaction: CTP + dolichol = CDP + dolichyl phosphate [goid 4168] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2 [goid 8484] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664938-S	ILMN_275446	NKD1_PREDICTED	XM_001066780.1	XM_001066780.1		364952	109508501	XM_001066780.1	Nkd1_predicted	XP_001066780.1	ILMN_1349515	0002510348	S	1488	TACCACCACTTCTATCAGCCCTAAACCCCACCAGGCTGCCACAGGAAGGA				19p11	PREDICTED: Rattus norvegicus naked cuticle 1 homolog (Drosophila) (predicted) (Nkd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424159-S	ILMN_264738	ATP12A	NM_133517.1	NM_133517.1		171028	19424159	NM_133517.1	Atp12a	NP_598201.1	ILMN_1350808	0000510725	S	3691	CCAAGGCATGTGCTGGGGTCTGCCCTAAGCTAGACTATGATTCCTCAGGC	15	+	35321125-35321174	15p12	Rattus norvegicus ATPase, H+/K+ transporting, nongastric, alpha polypeptide (Atp12a), mRNA.	The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; The regulation of the levels, transport, and metabolism of potassium ions [goid 55075] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence NAS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645357-S	ILMN_54799	TNKS1BP1_PREDICTED	XM_215763.4	XM_215763.4		295707	109468387	XM_215763.4	Tnks1bp1_predicted	XP_215763.4	ILMN_1357450	0006380368	S	4802	CATCCGACCTGGGGGTACTCTGGGCCTGTCAGAAACAGCAGACATGGATG	3	+	68305913-68305962	3q24	PREDICTED: Rattus norvegicus tankyrase 1 binding protein 1 (predicted) (Tnks1bp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653941-S	ILMN_55105	LOC503201	XM_578725.1	XM_578725.1		503201	62653941	XM_578725.1	LOC503201	XP_578725.1	ILMN_1373288	0004200435	S	85	CCAAGGTCTTGGCTGAGGCTGTGCTAGTGCAGGATGAGGTTCTGAAAATC					PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC503201), mRNA.					
Rattus norvegicus	RefSeq	GI_62648758-S	ILMN_62321	LOC500429	XM_575791.1	XM_575791.1		500429	62648758	XM_575791.1	LOC500429	XP_575791.1	ILMN_1360289	0000780706	S	617	GGCCAGAGTCGATACCCTGTAAGGCCCGACGGAGAGAGGAAGTCATAGGT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC500429), mRNA.					
Rattus norvegicus	RefSeq	GI_62652665-S	ILMN_274043	CYHR1	NM_001025122.1	NM_001025122.1		315097	68341942	NM_001025122.1	Cyhr1	NP_001020293.1	ILMN_1365300	0004780670	S	1194	AGGACACTTGGGGCCTGATTCTGGGGGGAACATGGTTGTGAGTCAGAGGC	7	-	114707131-114707180	7q34	Rattus norvegicus cysteine and histidine rich 1 (Cyhr1), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108816	MGC108816
Rattus norvegicus	RefSeq	GI_62659849-S	ILMN_51752	LOC498297	XM_573525.1	XM_573525.1		498297	62659849	XM_573525.1	LOC498297	XP_573525.1	ILMN_1374345	0007050092	S	1185	CAACCCGACAGGGTGTTTGCCAGCAGGATGTGTAAGGGCTGTGTGGACTC				13q26	PREDICTED: Rattus norvegicus similar to 9630058J23Rik protein (LOC498297), mRNA.					
Rattus norvegicus	RefSeq	GI_62666078-S	ILMN_277084	RGD1561288_PREDICTED	XR_007787.1	XR_007787.1		365580	109510170	XR_007787.1	RGD1561288_predicted		ILMN_1354302	0002630102	S	611	AGGAGTTCACTGAGGCAGTAGGAGCCAAACAGGTAGCTCAGCGGAAAGCG				20q11	PREDICTED: Rattus norvegicus similar to prohibitin (predicted) (RGD1561288_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651925-S	ILMN_66511	LOC503119	XM_578639.1	XM_578639.1		503119	62651925	XM_578639.1	LOC503119	XP_578639.1	ILMN_1361159	0007100091	S	513	CTTATAGGCATCACACTCTCCATTCTGCTGGGGCGAGGGCTAGGGGCATC					PREDICTED: Rattus norvegicus similar to envelope protein (LOC503119), mRNA.					
Rattus norvegicus	RefSeq	GI_18777773-S	ILMN_263452	KCNH7	NM_131912.1	NM_131912.1		170739	18777773	NM_131912.1	Kcnh7	NP_571987.1	ILMN_1354370	0001090270	S	3714	GTAGGGATCTTGGGTCTCCATAGGCATGTTTCTGATCCTGGTCTTCCGGG	3	-	44657404-44657453	3q21	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 7 (Kcnh7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA];  [goid 5242] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	erg3	erg3
Rattus norvegicus	RefSeq	GI_61556975-S	ILMN_281514	PTPN18	NM_001013111.1	NM_001013111.1		301333	61556975	NM_001013111.1	Ptpn18	NP_001013129.1	ILMN_1367177	0002360075	S	1195	CAGGGGACAACGGCACTGGGCCGAGTTCCTGCGGATGAAAACCCTTCCGG	9	+	33213751-33213778:33214144-33214165	9q21	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 18 (Ptpn18), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	 [goid 4726] [evidence ISS];  [goid 4726] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]	MGC112828; MGC112761; PTP20	MGC112828; MGC112761; PTP20
Rattus norvegicus	RefSeq	GI_18034782-S	ILMN_293154	ABCC3	NM_080581.1	NM_080581.1		140668	18034782	NM_080581.1	Abcc3	NP_542148.1	ILMN_1351428	0005570278	S	4792	CAGTGGAATGAGGAAGTGGGTCCTTGGAGGTCACAGCCAGTTCACAGCCA	10	-	82986803-82986852	10q26	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 3 (Abcc3), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of drugs into, out of, within or between cells [goid 6855] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP];  [goid 15722] [evidence IDA]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells [goid 15893] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O + xenobiotic(in) = ADP + phosphate + xenobiotic(out) [goid 8559] [evidence IMP]; Enables the directed movement of a drug into, out of, within or between cells. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 15238] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(in) + ATP + H2O = bile acid(out) + ADP + phosphate [goid 15432] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IDA]	Mlp2; Mrp3	Mlp2; Mrp3
Rattus norvegicus	RefSeq	GI_62638831-S	ILMN_284237	RGD1308782	NM_001025677.1	NM_001025677.1		308318	71043843	NM_001025677.1	RGD1308782	NP_001020848.1	ILMN_1370803	0004570315	S	1165	CACAACTGCTTCCTTGTTGCTCATCAGCGAGTTCACACAGGAGAGACACC	1	-	65101275-65101324	1q12	Rattus norvegicus similar to Zinc finger protein OZF (POZF-1) (RGD1308782), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114396	MGC114396
Rattus norvegicus	RefSeq	GI_62667301-S	ILMN_55043	LOC503469	XM_579023.1	XM_579023.1		503469	62667301	XM_579023.1	LOC503469	XP_579023.1	ILMN_2040127	0002320491	S	609	ATCTTGTGAACCTCCCTTCTATGGAGCCTACCAGGAGCTCTCTGACACTC					PREDICTED: Rattus norvegicus similar to presenilin associated, rhomboid-like (LOC503469), mRNA.					
Rattus norvegicus	RefSeq	GI_21326460-S	ILMN_51591	TPCN1	NM_139332.3	NM_139332.3		246215	75709229	NM_139332.3	Tpcn1	NP_647548.2	ILMN_1371451	0002450037	S	4323	CCTGAGAAAACCTGTCCCCACAGAAGTCACCTTGAGCACACACCAAGCTG				12q16	Rattus norvegicus two pore channel 1 (Tpcn1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242236-S	ILMN_279650	LOC498045	XR_008535.1	XR_008535.1		498045	109493904	XR_008535.1	LOC498045		ILMN_1360011	0004850072	S	1989	GCTTCTTCAGGCCCCACCATTGAAGAGGTCGATTAAGTCAAAGTAGAGGG				11q11	PREDICTED: Rattus norvegicus similar to Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) (LOC498045), mRNA.					
Rattus norvegicus	RefSeq	GI_62665681-S	ILMN_281446	VARS2	XM_001076616.1	XM_001076616.1		25009	109509744	XM_001076616.1	Vars2	XP_001076616.1	ILMN_1363732	0002940022	S	3988	AGATGCTGTGACACCCCCAGTTCCAACCCCCAGTGTTCCACCAAACAGGG					PREDICTED: Rattus norvegicus valyl-tRNA synthetase 2 (Vars2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6438] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-tRNA(Val) [goid 4832] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665307-S	ILMN_275941	RGD1565047_PREDICTED	XR_009189.1	XR_009189.1		365006	109508945	XR_009189.1	RGD1565047_predicted		ILMN_1373973	0000450093	S	569	GTCTGCGTGAAGACCAAGGCGCTGGTGCCAGACGAGGGTTCAGACCTCTT				19q12	PREDICTED: Rattus norvegicus similar to Cell division cycle 34 homolog (predicted) (RGD1565047_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948377-S	ILMN_268440	MCM7	NM_001004203.1	NM_001004203.1		288532	51948377	NM_001004203.1	Mcm7	NP_001004203.1	ILMN_1358066	0003450692	S	2052	GTCCGTGAGTTGGTATCAGGGGGACGGAGTGTCCGCTTTTCTGAGGCTGA	12	-	17607480-17607529	12q11	Rattus norvegicus minichromosome maintenance deficient 7 (S. cerevisiae) (Mcm7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A hexameric protein complex required for the initiation and regulation of DNA replication [goid 42555] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence TAS]; The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of single- or double-stranded DNA; drives another reaction [goid 8094] [evidence TAS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC93853	MGC93853
Rattus norvegicus	RefSeq	GI_16758329-S	ILMN_276878	TRPC6	NM_053559.1	NM_053559.1		89823	16758329	NM_053559.1	Trpc6	NP_446011.1	ILMN_1352879	0002850273	S	2738	GAAAGCTTGGGGAGAGACTGTCTTTAGAGTCGAAACAAGAGGAAAGCCGC	8	+	5577482-5577531	8q11	Rattus norvegicus transient receptor potential cation channel, subfamily C, member 6 (Trpc6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15279] [evidence IEA];  [goid 15279] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Trrp6	Trrp6
Rattus norvegicus	RefSeq	GI_6981459-S	ILMN_287675	RASA1	NM_013135.1	NM_013135.1		25676	6981459	NM_013135.1	Rasa1	NP_037267.1	ILMN_1351158	0003940593	S	2902	GTACCTGAGCTTCCGGACACTACAGAACATTCTAGAACTGACCTGTCTCG	2	-	14204869-14204918	2q11	Rattus norvegicus RAS p21 protein activator (GTPase activating protein) 1 (Rasa1), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell adhesion to the extracellular matrix [goid 1953] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence NAS]; Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence ISS]; Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IEA]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence ISS]	GAPX; Rasa	GAPX; Rasa
Rattus norvegicus	RefSeq	GI_62662874-S	ILMN_288659	LOC686318	XM_001073521.1	XM_001073521.1		686318	109504435	XM_001073521.1	LOC686318	XP_001073521.1	ILMN_1350571	0003130121	S	880	TCGCATGGAGAACGCGGCTGTCGGCTTCACAGCTTGTTGGAGAGGTAGTC					PREDICTED: Rattus norvegicus similar to NIMA (never in mitosis gene a)-related expressed kinase 5 (LOC686318), mRNA.					
Rattus norvegicus	RefSeq	GI_62657852	ILMN_266865	TRAT1	NM_001037981.1	NM_001037981.1		498075	83816942	NM_001037981.1	Trat1	NP_001033070.1	ILMN_1650313	0002260301	S	447	GCTCGACCACAGAGATCTGCAAGTGACGCACAGGAAGTGGTTGCACCTGC	11	+	53308851-53308900	11q21	Rattus norvegicus T cell receptor associated transmembrane adaptor 1 (Trat1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence ISS]	Any process that stops, prevents, or reduces the rate of receptor recyling [goid 1920] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50862] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 51051] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate = ADP + 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate [goid 46934] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13592122-S	ILMN_262591	UBE2B	NM_031138.1	NM_031138.1		81816	13592122	NM_031138.1	Ube2b	NP_112400.1	ILMN_1374980	0007000433	S	1359	TCCCCGTTGCATTCATCTTACACACTTGCAGGCTAGCGCATGCCACACGC				10q22	Rattus norvegicus ubiquitin-conjugating enzyme E2B, RAD6 homolog (S. cerevisiae) (Ube2b), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement [goid 7288] [evidence IEA]; The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement [goid 7288] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646477	ILMN_64710	LOC296449	XM_230936.3	XM_230936.3		296449	62646477	XM_230936.3	LOC296449	XP_230936.3	ILMN_1651095	0006510128	S	3842	ACCGACTTGAGGGGTTAGAGCCACGGGGGACCTTTGGGAGGAGTTCAGCA					PREDICTED: Rattus norvegicus similar to C20orf174 (LOC296449), mRNA.					
Rattus norvegicus	RefSeq	GI_62649717-S	ILMN_273137	ZBTB8OS_PREDICTED	XM_001060735.1	XM_001060735.1		297885	109477297	XM_001060735.1	Zbtb8os_predicted	XP_001060735.1	ILMN_1368520	0006590164	S	1011	GGTCATGGCTTACGTTGCTAGGGAACAGAGCCATCCTCTGCTCTAGCTGG				5q36	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 8 opposite strand (predicted) (Zbtb8os_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666828-S	ILMN_51026	LOC367793	XM_346304.2	XM_346304.2		367793	62666828	XM_346304.2	LOC367793	XP_346305.2	ILMN_1372962	0006130193	S	2417	GAAACATACAGATCCTCACATATCAGGCCCCCTCGCCGACCTCTTCAGGC				Xq21	PREDICTED: Rattus norvegicus similar to transcriptional repressor Scml2 (LOC367793), mRNA.					
Rattus norvegicus	RefSeq	GI_34013519-S	ILMN_281613	RHCG	NM_183053.1	NM_183053.1		293048	34013519	NM_183053.1	Rhcg	NP_898876.1	ILMN_1361451	0003520711	S	1796	TCCTGTGAAAAGCACCATGAAGAGAGGCTGAGGTTGGGGGTGGGATGGGG	1	-	135361510-135361559	1q31	Rattus norvegicus Rh family, C glycoprotein (Rhcg), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The regulation of the levels, transport, and metabolism of ions within a cell or between a cell and its external environment [goid 6873] [evidence ISS]; The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals [goid 15696] [evidence ISS]	Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals [goid 8519] [evidence ISS]; Interacting selectively with ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins [goid 30506] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47578026-S	ILMN_286840	OLR1064	NM_001001076.1	NM_001001076.1		405966	47578026	NM_001001076.1	Olr1064	NP_001001076.1	ILMN_1365003	0006650577	S	809	AAGGGATAGCTCTGCTCAGCACTTCAGTTGCACCCATGTTGAATCCCTTC	7	+	8105672-8105721	7q11	Rattus norvegicus olfactory receptor 1064 (Olr1064), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1064	Olr1064
Rattus norvegicus	RefSeq	GI_13591937-S	ILMN_285636	DYNC1LI2	NM_031026.1	NM_031026.1		81655	13591937	NM_031026.1	Dync1li2	NP_112288.1	ILMN_1364293	0006290671	S	4179	GCCTTAGTCCAGGATGTGGCTCTGTCTGGGTGCAGTATGCAGTCATGTGG	19	+	510524-510573	19p14	Rattus norvegicus dynein, cytoplasmic 1 light intermediate chain 2 (Dync1li2), mRNA.	Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence TAS]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence TAS]; The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons [goid 8090] [evidence TAS]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence TAS]	MGC108664; Lic2	MGC108664; Lic2
Rattus norvegicus	RefSeq	GI_62648526-S	ILMN_51065	PRDM14_PREDICTED	XM_232597.3	XM_232597.3		297769	62648526	XM_232597.3	Prdm14_predicted	XP_232597.3	ILMN_1366242	0004060494	S	1791	CACCCAGATTTGCTTGGAAACACAGTCCACACAGCCACCATGCCACCCCG					PREDICTED: Rattus norvegicus PR domain containing 14 (predicted) (Prdm14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393324-S	ILMN_69395	ERBB2	NM_017003.2	NM_017003.2		24337	77020288	NM_017003.2	Erbb2	NP_058699.2	ILMN_1350020	0006180685	S	3769	GACAACCTCTATTACTGGGACCAGAACTCATCGGAGCAGGGGCCTCCACC	10	+	87241961-87242010	10q31	Rattus norvegicus v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) (Erbb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IDA]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Non-compact myelin located adjacent to the nodes of Ranvier in a myelin segment. These non-compact regions include cytoplasm from the cell responsible for synthesizing the myelin. Lateral loops are found in the paranodal region adjacent to the nodes of Ranvier, while Schmidt-Lantermann clefts are analogous structures found within the compact myelin internode [goid 43219] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence TAS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IMP]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IGI]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of immature T cell proliferation in the thymus [goid 33088] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IMP]; The process whose specific outcome is the progression of the tongue over time, from its formation to the mature structure. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43586] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence IDA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence IEP]; The estrous cycle phase in which a female is sexually receptive [goid 60209] [evidence IMP]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IPI]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with an iron-sulfur cluster, a combination of iron and sulfur atoms [goid 51536] [evidence IEA]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718650-S	ILMN_268174	LOC301133	XM_001059278.1	XM_001059278.1		301133	109486578	XM_001059278.1	LOC301133	XP_001059278.1	ILMN_1359853	0001740520	S	787	AACAGCTCCCGAGTCTGGTGGGACAGTAGTTTCCTCGGCGGAGTGGTACA					PREDICTED: Rattus norvegicus similar to Tumor necrosis factor ligand superfamily member 14 (CD258 antigen) (LOC301133), mRNA.					
Rattus norvegicus	RefSeq	GI_62649005-S	ILMN_286818	RGD1565912_PREDICTED	XM_001058861.1	XM_001058861.1		298014	109476519	XM_001058861.1	RGD1565912_predicted	XP_001058861.1	ILMN_1362952	0002510672	S	68	AGCAGGAAACAGCCTTCGCCATCACTGCCACTAAGGGGGCGGAGCAGAGA				5q24	PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (predicted) (RGD1565912_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078706-S	ILMN_293101	G3BP2	NM_001013989.1	NM_001013989.1		305240	62078706	NM_001013989.1	G3bp2	NP_001014011.1	ILMN_1355444	0004150592	S	1595	CGTGGAATTGTGGGTGGTGGAATGATGCGTGATCGTGACGGAAGAGGGCC	14	+	17587983-17588032	14p22	Rattus norvegicus GTPase activating protein (SH3 domain) binding protein 2 (G3bp2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	Rn.22084	ILMN_293101	G3BP2	NM_001013989.1	NM_001013989.1		305240	62078706	NM_001013989.1	G3bp2	NP_001014011.1	ILMN_1530348	0006650170	S	347	TGTTGGTTGGAGCATTTGACATTGTGCAGCAAAGAAATGGTTATGGAGAA	14	+	17557313-17557324:17567721-17567744:17567745-17567758	14p22	Rattus norvegicus GTPase activating protein (SH3 domain) binding protein 2 (G3bp2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62667420-S	ILMN_302652	PLAC1	NM_001024894.1	NM_001024894.1		317316	67846067	NM_001024894.1	Plac1	NP_001020065.1	ILMN_1361118	0005550673	S	666	CTACCACGTGTTCACCTTGCCAGAGCCTAGCCAACAGCCCAACTGCAGCT	X	-	140015256-140015305	Xq36	Rattus norvegicus placenta-specific 1 (Plac1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_42476343-S	ILMN_275928	RPL30	NM_022699.2	NM_022699.2		64640	42476343	NM_022699.2	Rpl30	NP_073190.1	ILMN_1372101	0003140088	S	83	GGCTGCAAAGAAGACGAAAAAGTCTCTGGAGTCAATCAACTCTCGGCTCC	7	-	69889171-69889209:69889456-69889466	7q22	Rattus norvegicus ribosomal protein L30 (Rpl30), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660485-S	ILMN_51564	TBC1D1_PREDICTED	XM_341215.3	XM_341215.3		360937	109499692	XM_341215.3	Tbc1d1_predicted	XP_341216.3	ILMN_1358652	0004670672	S	4937	TGCACCACTTACACTGTCCGGGCCTTAATGGAGAGAGGGAAGCTGGAAGC	14	-	46596292-46596341	14p11	PREDICTED: Rattus norvegicus TBC1 domain family, member 1 (predicted) (Tbc1d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660739-S	ILMN_52817	NF2	XM_341248.3	XM_341248.3		25744	109499954	XM_341248.3	Nf2	XP_341249.3	ILMN_1370342	0006350131	S	2183	GAGAGGGAGACAGCCTTGGACATCCTACACAGCGAGCACTCAGACAGAGG	14	-	85431113-85431162	14q21	PREDICTED: Rattus norvegicus neurofibromatosis 2 (Nf2), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation [goid 7398] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication [goid 8156] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system [goid 14010] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell adhesion to another cell [goid 22408] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42518] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells [goid 45216] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence ISS]	Interacting selectively with an integrin [goid 5178] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IPI]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62655151-S	ILMN_69087	RGD1311824_PREDICTED	XM_237209.4	XM_237209.4		301466	109486197	XM_237209.4	RGD1311824_predicted	XP_237209.2	ILMN_1361249	0004760066	S	580	GCTGGAGAGGCAGTTCACTGTGAGTAAGGTTCACTACGATCCTGAGAAGG	9	-	63246186-63246235	9q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310038H17 (predicted) (RGD1311824_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666293-S	ILMN_289003	RGD1560975_PREDICTED	XR_008598.1	XR_008598.1		309848	109510301	XR_008598.1	RGD1560975_predicted		ILMN_1358205	0000520408	S	1273	GATCCAATGTATGCCAAGCGTGCTTTTGTGCACTGGTGCATGGGTGAGGG				20q13	PREDICTED: Rattus norvegicus similar to Tubulin alpha-2 chain (Alpha-tubulin 2) (predicted) (RGD1560975_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.872	ILMN_161214	RN.872	Rn.872		Rn.872		29576266	CB616378			ILMN_1530218	0004200139	S	37	TTTTTGACAGTAGCCATTTCAGTTTTATTTTGACATTTCACTCACATGCA					AMGNNUC:URRG1-00040-C5-A urrg1 (14046) Rattus norvegicus cDNA clone urrg1-00040-c5 5', mRNA					
Rattus norvegicus	RefSeq	GI_62660398	ILMN_279643	OCIAD1	NM_001013874.1	NM_001013874.1		289590	62078482	NM_001013874.1	Ociad1	NP_001013896.1	ILMN_1650001	0005050494	S	1239	GAGCGAGCACATGCCCAGGGTTCCGCTTCGCATCAGTTATTAAAAGGCCT	14	-	37301369-37301418	14p11	Rattus norvegicus OCIA domain containing 1 (Ociad1), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62655887-S	ILMN_274395	STUB1	NM_001025625.1	NM_001025625.1		287155	71043731	NM_001025625.1	Stub1	NP_001020796.1	ILMN_1350492	0006940519	S	996	CGCAAGGACATTGAGGAGCACCTGCAGCGCGTGGGCCATTTCGATCCTGT	10	-	15096500-15096523:15096602-15096627	10q12	Rattus norvegicus STIP1 homology and U-Box containing protein 1 (Stub1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of SMAD signaling proteins by ubiquitination and targeting to the proteasome [goid 30579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids [goid 31943] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32436] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Stops, prevents or reduces the activity of the Hsp90 molecular chaperone [goid 10546] [evidence ISS]; Stops, prevents or reduces the activity of chaperones of the Hsp70/Hsc70 class [goid 30191] [evidence ISS]; Interacting selectively with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size [goid 30544] [evidence ISS]; Interacting selectively with a tetratricopeptide repeat (TPR) domain of a protein, the consensus sequence of which is defined by a pattern of small and large hydrophobic amino acids and a structure composed of helices [goid 30911] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]	MGC116422	MGC116422
Rattus norvegicus	RefSeq	GI_62648988-S	ILMN_51441	LOC500458	XM_575822.1	XM_575822.1		500458	62648988	XM_575822.1	LOC500458	XP_575822.1	ILMN_1364305	0004480538	S	1608	GACGGTGAAAAGTCTGGTGGGAAGAAGGAAGCCAGGGCAAGTAAAAAGGG				5q23	PREDICTED: Rattus norvegicus similar to Cylicin-2 (Cylicin II) (Multiple-band polypeptide II) (LOC500458), mRNA.					
Rattus norvegicus	RefSeq	GI_62664609-S	ILMN_274209	LOC361346	NM_001017462.1	NM_001017462.1		361346	62945279	NM_001017462.1	LOC361346	NP_001017462.1	ILMN_1352522	0004560671	S	1470	CTCGCCTGAGAGACCTGGTCGATGATACCAGTGGGAGACAGTCACCAAAG	18	-	67162257-67162306	18q12.1	Rattus norvegicus similar to chromosome 18 open reading frame 54 (LOC361346), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_56090229-S	ILMN_280927	WSB2	NM_001007616.1	NM_001007616.1		288692	56090229	NM_001007616.1	Wsb2	NP_001007617.1	ILMN_1365798	0005670181	S	1390	GTGCAAGTAGGTCTGAGTGATCCCACTTCCGTGGTGCCAGCCTTACCTCG	12	-	40406964-40407013	12q16	Rattus norvegicus WD repeat and SOCS box-containing 2 (Wsb2), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]		MGC93822	MGC93822
Rattus norvegicus	RefSeq	GI_62647473-S	ILMN_68452	LOC500201	XM_575553.1	XM_575553.1		500201	62647473	XM_575553.1	LOC500201	XP_575553.1	ILMN_1371094	0006370309	S	1305	GGCATTAAAATGACCCACCTGGGGAGGTTGGCTTCCTCAGAGACATTGCC					PREDICTED: Rattus norvegicus similar to B-cell linker (LOC500201), mRNA.					
Rattus norvegicus	RefSeq	GI_58865657-A	ILMN_280384	IRF9	NM_001012041.1	NM_001012041.1		305896	58865657	NM_001012041.1	Irf9	NP_001012041.1	ILMN_1376447	0000380687	S	1169	TTGTTCCTGGTACAGCACACAGAGCACCAACCTGCCACTCTCGCACTCTG	15	+	33744528-33744577	15p13	Rattus norvegicus interferon regulatory factor 9 (Irf9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any type I interferon. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families [goid 45351] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646739-S	ILMN_56202	LOC502717	XM_578216.1	XM_578216.1		502717	62646739	XM_578216.1	LOC502717	XP_578216.1	ILMN_1349766	0005570736	S	806	CAGCCCAGAACTCAAGGTGCCTCATTTACGCCTCGGCAGCCAAGCTTGGA					PREDICTED: Rattus norvegicus similar to activin receptor interacting protein 1 (LOC502717), mRNA.					
Rattus norvegicus	RefSeq	GI_31542554-S	ILMN_272859	DHCR7	NM_022389.2	NM_022389.2		64191	31542554	NM_022389.2	Dhcr7	NP_071784.1	ILMN_1349202	0002650041	S	2533	CAGACTTGGCTCTGACAACCCAGAATGTATCACCAGTTAGTGGCCTCAGC	1	+	204258897-204258913	1q41	Rattus norvegicus 7-dehydrocholesterol reductase (Dhcr7), mRNA.	The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence TAS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45540] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: cholesterol + NADP+ = cholesta-5,7-dien-3-beta-ol + NADPH + H+ [goid 47598] [evidence TAS]; Catalysis of the reaction: cholesterol + NADP+ = cholesta-5,7-dien-3-beta-ol + NADPH + H+ [goid 47598] [evidence ISS]; Catalysis of the reaction: cholesterol + NADP+ = cholesta-5,7-dien-3-beta-ol + NADPH + H+ [goid 47598] [evidence IEA]	MGC93039	MGC93039
Rattus norvegicus	RefSeq	GI_62651894-S	ILMN_64975	ALDH1L2_PREDICTED	XM_235005.4	XM_235005.4		299699	109480408	XM_235005.4	Aldh1l2_predicted	XP_235005.4	ILMN_1352945	0006520647	S	2467	ACGGAGGAAGACAGGTACAGAGGCCAGGCTTTTTCATGGAGCCCACTGTG	7	+	22444106-22444132:22446065-22446087	7q13	PREDICTED: Rattus norvegicus aldehyde dehydrogenase 1 family, member L2 (predicted) (Aldh1l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46391107-S	ILMN_294536	NDUFA10	NM_199495.1	NM_199495.1		314071	46391107	NM_199495.1	Ndufa10	NP_955789.1	ILMN_1363632	0005900039	S	1730	AGTCTGTGCCGCGAATCCTGCTGTGGCTGCTCCGAGCACGTGTAACTTAC	6	-	62280351-62280400	6q21	Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 (Ndufa10), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]	MGC72603	MGC72603
Rattus norvegicus	RefSeq	GI_62659767-S	ILMN_287997	IGSF4B_PREDICTED	XM_001058531.1	XM_001058531.1		360882	109499092	XM_001058531.1	Igsf4b_predicted	XP_001058531.1	ILMN_1359083	0002570093	S	2407	AGCCCTCGGTCCCTCCTCCCTCAGCAGCCAGGCAGACATGACAACAAAAT				13q24	PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 4B (predicted), transcript variant 1 (Igsf4b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164144-S	ILMN_296798	NT5DC2	NM_001009271.1	NM_001009271.1		290558	57164144	NM_001009271.1	Nt5dc2	NP_001009271.1	ILMN_1356169	0003060592	S	1472	GCCCTGTTCAACGCTCAGTTTGGGAGCATCTTCCGCACCTTCCACAACCC	16	+	6567364-6567413	16p16	Rattus norvegicus 5'-nucleotidase domain containing 2 (Nt5dc2), mRNA.			Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RGD1305524; MGC95062	RGD1305524; MGC95062
Rattus norvegicus	RefSeq	GI_47577940-S	ILMN_267082	OLR1129	NM_001000879.1	NM_001000879.1		405178	47577940	NM_001000879.1	Olr1129	NP_001000879.1	ILMN_1352106	0001660301	S	910	GTTCTTGTTAGACTCTCTTCTGTTATGTATGATGAGCCTGGGGCTTGGTT	8	-	17080941-17080990	8q13	Rattus norvegicus olfactory receptor 1129 (Olr1129), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1129	Olr1129
Rattus norvegicus	RefSeq	GI_13676842-S	ILMN_265226	UBE2D3	NM_031237.1	NM_031237.1		81920	13676842	NM_031237.1	Ube2d3	NP_112516.1	ILMN_1360101	0000580364	S	1058	GCTGAAGAAGCCATCTGAGGGGGAGGGGGATGGATGCTGAGCTGTCACAT	2	+	232970549-232970598	2q43	Rattus norvegicus ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) (Ube2d3), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IDA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence ISS]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IDA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653271-S	ILMN_67417	LOC363021	XM_347095.2	XM_347095.2		363021	62653271	XM_347095.2	LOC363021	XP_347096.1	ILMN_1360674	0002370711	S	182	ACCGTCTGGATACATACTGAGCACATCCTTCTGGGACTGGGTTACCTCAC					PREDICTED: Rattus norvegicus similar to hypothetical protein PC400345.00.0 (LOC363021), mRNA.					
Rattus norvegicus	RefSeq	GI_62649937-S	ILMN_55095	SDHB_PREDICTED	XM_216558.3	XM_216558.3		298596	109475693	XM_216558.3	Sdhb_predicted	XP_216558.3	ILMN_1374493	0003990075	S	661	TCGAGGACCGGGAGAAGCTGGACGGATTGTATGAGTGCATCCTGTGTGCC	5	+	159834255-159834274:159836687-159836716	5q36	PREDICTED: Rattus norvegicus succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (predicted) (Sdhb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656230-S	ILMN_55384	HS3ST3B_PREDICTED	XM_220557.3	XM_220557.3		303218	62656230	XM_220557.3	Hs3st3b_predicted	XP_220557.3	ILMN_1362076	0002940102	S	1927	CTGAGCTGCCTCAGGATGCTGTAGTCTGAAGGTGGAATTGGCTTAGGCAG				10q24	PREDICTED: Rattus norvegicus heparan sulfate (glucosamine) 3-O-sulfotransferase 3B (predicted) (Hs3st3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666730-S	ILMN_268072	RGD1565983_PREDICTED	XM_001061562.1	XM_001061562.1		317628	109511623	XM_001061562.1	RGD1565983_predicted	XP_001061562.1	ILMN_1372598	0005130575	S	1860	ATTCACCCCATACACAGGGTCGATACCAGGTCCCTGCCTTTGAAGATGTC				Xq21	PREDICTED: Rattus norvegicus similar to apurinic/apyrimidinic endonuclease 2 (predicted) (RGD1565983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393521-S	ILMN_274763	HAL	NM_017159.1	NM_017159.1		29301	8393521	NM_017159.1	Hal	NP_058855.1	ILMN_1364209	0003990577	S	1830	CTTGACCAGAAGGTTTGGGAGGTGGCTGCCCCGTACATCGAGAAATACAG	7	+	30548853-30548864:30550851-30550888	7q13	Rattus norvegicus histidine ammonia lyase (Hal), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6547] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6548] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6548] [evidence ISS]	Catalysis of the reaction: L-histidine = urocanate + NH3 [goid 4397] [evidence IDA]; Catalysis of the reaction: L-histidine = urocanate + NH3 [goid 4397] [evidence TAS]; Catalysis of the reaction: L-histidine = urocanate + NH3 [goid 4397] [evidence IEA]; Catalysis of the reaction: L-histidine = urocanate + NH3 [goid 4397] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	histidase	histidase
Rattus norvegicus	RefSeq	GI_62650174-S	ILMN_272314	CPSF3L	NM_001033892.1	NM_001033892.1		298688	76559910	NM_001033892.1	Cpsf3l	NP_001029064.1	ILMN_2038943	0005390609	S	1547	TAATTTCCGGCTGGTATCCTCGGAGCAAGCCCTCAAGGAGTTGGGCCTGG	5	+	172745941-172745941:172746019-172746067	5q36	Rattus norvegicus cleavage and polyadenylation specific factor 3-like (Cpsf3l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II [goid 32039] [evidence ISS]	Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule [goid 16180] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC124975	MGC124975
Rattus norvegicus	RefSeq	GI_34880617-S	ILMN_287538	RGD1559767_PREDICTED	XM_001058339.1	XM_001058339.1		367806	109511825	XM_001058339.1	RGD1559767_predicted	XP_001058339.1	ILMN_1355816	0002810095	S	173	ACGGTCACCAGTGCTCCAAGTGCCGGCTGCAGTTTCTAACCTTTAAGGGG				Xq22	PREDICTED: Rattus norvegicus similar to suppressor of hairy wing homolog 2 (predicted) (RGD1559767_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577010-S	ILMN_277011	OLR613	NM_001000654.1	NM_001000654.1		404852	47577010	NM_001000654.1	Olr613	NP_001000654.1	ILMN_1353326	0002370278	S	719	CCTGCACCTCCCATCTTACTGCAGTTGCCATTTTCCAAGGAACTGTACTC	3	-	71973817-71973866	3q24	Rattus norvegicus olfactory receptor 613 (Olr613), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr613	Olr613
Rattus norvegicus	RefSeq	GI_47577134-S	ILMN_275863	OLR330	NM_001000761.1	NM_001000761.1		405034	47577134	NM_001000761.1	Olr330	NP_001000761.1	ILMN_2039625	0004670504	S	418	AGCCTCTGCTCTTGGATGCTCTTGGGAAGCTATACAGCAGGACTCATAAG	1	+	215177587-215177636	1q43	Rattus norvegicus olfactory receptor 330 (Olr330), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr330	Olr330
Rattus norvegicus	RefSeq	GI_47577348-S	ILMN_289092	OLR424	NM_001000392.1	NM_001000392.1		296686	47577348	NM_001000392.1	Olr424	NP_001000392.1	ILMN_1368992	0000360500	S	411	CCACAGCCTCTGTCTTCGAATAACGTTGACATCATTAGGGGTGGTCAGCC	3	-	16593520-16593569	3q11	Rattus norvegicus olfactory receptor 424 (Olr424), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr424	Olr424
Rattus norvegicus	RefSeq	GI_62647161	ILMN_272959	RGD1562046_PREDICTED	XM_001070395.1	XM_001070395.1		502749	109473383	XM_001070395.1	RGD1562046_predicted	XP_001070395.1	ILMN_1650198	0004060373	S	1184	TGAGGGCTCCTTCAGCATCGACAGCGAGGAGTATGAAGCCATGCCTGTGG				4q22	PREDICTED: Rattus norvegicus similar to putative lipid kinase (predicted) (RGD1562046_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758441-S	ILMN_295788	FCNB	NM_053634.1	NM_053634.1		114091	16758441	NM_053634.1	Fcnb	NP_446086.1	ILMN_1351900	0002360079	S	1035	GGAGTCTTCTATCTTTCTTCAGCCAAGGAAGGAGTGTGCCACCCCGCCCG	3	-	7011031-7011080	3p12	Rattus norvegicus ficolin B (Fcnb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667156	ILMN_69463	LOC501610	XM_577009.1	XM_577009.1		501610	62667156	XM_577009.1	LOC501610	XP_577009.1	ILMN_1650863	0005690019	S	386	GAGGCTTCTGGATCAAGGCATCCTAGTCCCCTGCCGGTCGCCTTGGAATA					PREDICTED: Rattus norvegicus similar to Gag-Pol polyprotein (LOC501610), mRNA.					
Rattus norvegicus	RefSeq	GI_13027397-S	ILMN_264595	CD200R1	NM_023953.1	NM_023953.1		64357	13027397	NM_023953.1	Cd200r1	NP_076443.1	ILMN_1367384	0002340184	S	902	TGACCACGACGGAGGCACACCCAGCGTCACAAGGCAAAGTCAATGGCACA	11	-	57427269-57427318	11q21	Rattus norvegicus CD200 receptor 1 (Cd200r1), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718860-S	ILMN_70376	TLL2_PREDICTED	XM_346257.2	XM_346257.2		367688	62718860	XM_346257.2	Tll2_predicted	XP_346258.2	ILMN_1363075	0004780079	S	291	GCCCGGAACACCTTCTCAAGTGGCCTCTGGGCTGCCGTGAAATACAATCT					PREDICTED: Rattus norvegicus tolloid-like 2 (predicted) (Tll2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222311-S	ILMN_272746	OAS1E	NM_001009492.1	NM_001009492.1		494201	57222311	NM_001009492.1	Oas1e	NP_001009492.1	ILMN_1350939	0006130601	S	1070	GGCTGGAAAGTGTCGGCACAGAAACAAGAATGTGTCTACCAGTGAGCACC	12	+	36892060-36892074:36893034-36893063:36893064-36893068	12q16	Rattus norvegicus 2'-5' oligoadenylate synthetase 1E (Oas1e), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646124-S	ILMN_69414	ACSS2_PREDICTED	XM_230773.4	XM_230773.4		311569	109469045	XM_230773.4	Acss2_predicted	XP_230773.4	ILMN_1360580	0004730504	S	2170	GCTCAGAATGACCACGACCTGGGGGATACCTCTACAGTGGCTGACCCATC	3	+	146056327-146056376	3q42	PREDICTED: Rattus norvegicus acyl-CoA synthetase short-chain family member 2 (predicted) (Acss2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777689-S	ILMN_273320	OLR937	NM_001001387.1	NM_001001387.1		366803	47777689	NM_001001387.1	Olr937	NP_001001387.1	ILMN_1349622	0002970400	S	802	AACAAAGGGATTGCCATACTCACTCTTGCACTTGCACCTGTACTAAACCC	7	+	4497533-4497582	7q11	Rattus norvegicus olfactory receptor 937 (Olr937), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr937	Olr937
Rattus norvegicus	RefSeq	GI_62652216-S	ILMN_58038	LOC500841	XM_576232.1	XM_576232.1		500841	62652216	XM_576232.1	LOC500841	XP_576232.1	ILMN_1364639	0000610735	S	990	GATCCTCTGTGTGGCACTGCGCAAAGTCATGTCCTCAGGAATCGGAAGCC				7q22	PREDICTED: Rattus norvegicus LOC500841 (LOC500841), mRNA.					
Rattus norvegicus	RefSeq	GI_62650119-S	ILMN_64276	LOC366498	XM_345598.2	XM_345598.2		366498	62650119	XM_345598.2	LOC366498	XP_345599.2	ILMN_1359310	0004780435	S	357	GGAGGGGGTGCCCTTTTTGGTAGCCTGAACCTTTACCATCGCTTGTGCAG				5q36	PREDICTED: Rattus norvegicus similar to novel protein similar to esterases (LOC366498), mRNA.					
Rattus norvegicus	RefSeq	GI_62649035-S	ILMN_290375	RGD1307983_PREDICTED	XM_001061972.1	XM_001061972.1		298032	109476556	XM_001061972.1	RGD1307983_predicted	XP_001061972.1	ILMN_1348807	0007100086	S	1636	GGAACTGAGGTGCTTACTTGTATATGTGCCTCCCACTACCCTTCCTTCGC				5q24	PREDICTED: Rattus norvegicus similar to HSPC043 protein (predicted) (RGD1307983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718586-S	ILMN_70113	LOC501430	XM_576840.1	XM_576840.1		501430	62718586	XM_576840.1	LOC501430	XP_576840.1	ILMN_1364485	0004730368	S	21	TCAATGCCTCCAGATTTCACTAATCAACCTGTTGTCCAGGCTAAGGAGGC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC079250; BC079266 (LOC501430), mRNA.					
Rattus norvegicus	RefSeq	GI_34860287-S	ILMN_64103	LOC360435	XM_346819.1	XM_346819.1		360435	34860287	XM_346819.1	LOC360435	XP_346820.1	ILMN_1371157	0005670731	S	1977	TGGGCTGCGCGATGATGGCGTGTGTCATGAAGTGTGAAATCCGAAGTAGA					PREDICTED: Rattus norvegicus hypothetical LOC360435 (LOC360435), mRNA.					
Rattus norvegicus	RefSeq	GI_30025027	ILMN_296637	AMIGO3	NM_178144.1	NM_178144.1		316003	30025027	NM_178144.1	Amigo3	NP_835280.1	ILMN_1651043	0000520333	S	1378	TTCCTGGAGCCGGGCAAGAAAGGCCTCAATGGCCGTGTGCAGCTAGCAGT	8	+	113322635-113322684	8q32	Rattus norvegicus adhesion molecule with Ig like domain 3 (Amigo3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence IPI]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62641930-S	ILMN_287560	LOC499331	NM_001024293.1	NM_001024293.1		499331	66730338	NM_001024293.1	LOC499331	NP_001019464.1	ILMN_2040065	0001450647	S	861	GGTTTTGGACAGTCTAAGAGGAAGCACTCGGGTCTTCCACACTTGTTCTG	1	+	222312735-222312784	1q43	Rattus norvegicus similar to hypothetical protein D030056L22 (LOC499331), mRNA.					
Rattus norvegicus	RefSeq	GI_62652833	ILMN_271729	POLDIP3_PREDICTED	XM_001077668.1	XM_001077668.1		315170	109482566	XM_001077668.1	Poldip3_predicted	XP_001077668.1	ILMN_1649933	0006550377	S	1376	ACTTTGAGGAGGGGATTGAGGCAGTCAGAAACAGGGCAGAGGAGGGGTGG				7q34	PREDICTED: Rattus norvegicus polymerase (DNA-directed), delta interacting protein 3 (predicted) (Poldip3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664993-S	ILMN_48901	RGD1564058_PREDICTED	XM_213835.4	XM_213835.4		288925	109507845	XM_213835.4	RGD1564058_predicted	XP_213835.1	ILMN_1369248	0002360020	S	236	GTGCTTGGGTTGCTGTCTACTGCTCCTTTATCAGCTTTGCCAACTCCCGG	19	-	24732143-24732192	19q11	PREDICTED: Rattus norvegicus similar to cDNA sequence BC056474 (predicted) (RGD1564058_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647773-S	ILMN_276497	RGD1562716_PREDICTED	XM_001075489.1	XM_001075489.1		500254	109473893	XM_001075489.1	RGD1562716_predicted	XP_001075489.1	ILMN_1360156	0005050594	S	38	GGGATAGATGAAAAGTGCCATGATCTGAAGAGGGGGAGCTGTTCCGTGTC				4q34	PREDICTED: Rattus norvegicus similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) (predicted) (RGD1562716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650505-S	ILMN_285426	PQLC3	NM_001034952.1	NM_001034952.1		298906	77993371	NM_001034952.1	Pqlc3	NP_001030124.1	ILMN_1361660	0003190288	S	1469	GTGCACAGGTGTATACTAAGCAGTTCTCCAACACAGTGTGCCTTAGGGAG	6	-	40676947-40676996	6q16	Rattus norvegicus PQ loop repeat containing 3 (Pqlc3), mRNA.				RGD1306818	RGD1306818
Rattus norvegicus	RefSeq	GI_16758413-S	ILMN_263558	CPB2	NM_053617.1	NM_053617.1		113936	16758413	NM_053617.1	Cpb2	NP_446069.1	ILMN_1357330	0001500538	S	1264	GGCAGATACGGGTTCTTGCTGCCTGAGAGATTCATCAAACCCACTTGCGC	15	+	56154137-56154186	15q11	Rattus norvegicus carboxypeptidase B2 (plasma) (Cpb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IMP]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IDA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence ISS]; Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649920-S	ILMN_288911	RGD1560187_PREDICTED	XM_342957.2	XM_342957.2		362641	62649920	XM_342957.2	RGD1560187_predicted	XP_342958.1	ILMN_1357657	0001170390	S	283	TGTGCTGGAGGACGGATCAGAGGAGCAGTGACTTATGCTGAGAACATCCC	5	-	157886442-157886470:157887062-157887082	5q36	PREDICTED: Rattus norvegicus similar to Hypothetical UPF0327 protein (predicted) (RGD1560187_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27545401-S	ILMN_278457	PNRC1	NM_173322.1	NM_173322.1		286988	27545401	NM_173322.1	Pnrc1	NP_775444.1	ILMN_1351488	0003390484	S	1266	AAGTGGGTGCTAAGGCACGTGGAAGACTGTTTATTTGCACAGGTACTGAC	5	-	49544625-49544674	5q21	Rattus norvegicus proline-rich nuclear receptor coactivator 1 (Pnrc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		Prol2	Prol2
Rattus norvegicus	RefSeq	GI_20301995-S	ILMN_266765	PROK1	NM_138851.1	NM_138851.1		192205	20301995	NM_138851.1	Prok1	NP_620206.1	ILMN_1362279	0005670037	S	72	GGCCTGTGAACGAGATGTCCAGTGTGGGGCTGGCACCTGCTGTGCTATCA	2	-	202710468-202710517	2q34	Rattus norvegicus prokineticin 1 (Prok1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence NAS]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence IEA]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660744-S	ILMN_53079	RGD1306100_PREDICTED	XM_344259.3	XM_344259.3		364190	109499964	XM_344259.3	RGD1306100_predicted	XP_344260.3	ILMN_1350810	0002940717	S	457	TGCAGCCCGGACAGTTTCGATTATGTGAAAGCCCTGAGGCAACGCATAGC	14	+	85720511-85720560	14q21	PREDICTED: Rattus norvegicus similar to RRP22 (predicted) (RGD1306100_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717900-S	ILMN_54530	LOC501250	XM_576669.1	XM_576669.1		501250	62717900	XM_576669.1	LOC501250	XP_576669.1	ILMN_1360904	0002970215	S	1309	GATGCACATCAATCAAGAGCTGCTGGTCACCCAGAAAGACTGTGCACGTG					PREDICTED: Rattus norvegicus similar to Reticulocalbin 1 precursor (LOC501250), mRNA.					
Rattus norvegicus	RefSeq	GI_62659206-S	ILMN_52043	LOC501850	XM_577263.1	XM_577263.1		501850	62659206	XM_577263.1	LOC501850	XP_577263.1	ILMN_1361664	0004540592	S	227	CACCACGCTTTCCTTGTGGAGATTGAACAAGGATGCTTTCTTGGGCACTG					PREDICTED: Rattus norvegicus LOC501850 (LOC501850), mRNA.					
Rattus norvegicus	RefSeq	GI_34874818-S	ILMN_56770	LOC301282	XM_236973.2	XM_236973.2		301282	34874818	XM_236973.2	LOC301282	XP_236973.2	ILMN_1362496	0000050086	S	49	GCCTTAGGATAGTTTTGAGGCGAACAGAGCCGGAGACAAAAGCAGAGCTG				9q13	PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) (LOC301282), mRNA.					
Rattus norvegicus	RefSeq	GI_62653327-S	ILMN_272368	SPBC24_PREDICTED	XM_001077474.1	XM_001077474.1		363028	109484371	XM_001077474.1	Spbc24_predicted	XP_001077474.1	ILMN_1364291	0003840647	S	586	GCATGGTAGCCAGAGCCTTGACCTTGCATAGAATTGAGGTTGAAGGGGCC				8q13	PREDICTED: Rattus norvegicus spindle pole body component 24 homolog (S. cerevisiae) (predicted) (Spbc24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661784-S	ILMN_61103	LOC498555	XM_573831.1	XM_573831.1		498555	62661784	XM_573831.1	LOC498555	XP_573831.1	ILMN_1374580	0005690603	S	1	TAGCTCACCTTTCACCGCCGGACGCCGCCGAGGTCGCACGCGTGAGGTCT				15q21	PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P2 (LOC498555), mRNA.					
Rattus norvegicus	RefSeq	GI_62640803-S	ILMN_54974	RGD1566010_PREDICTED	XM_579932.2	XM_579932.2		499195	109458991	XM_579932.2	RGD1566010_predicted	XP_579932.2	ILMN_1351716	0001940008	S	435	ACCGGCTTGTGGATCCTGGGTGGGCGTGGAGAGCTGCTTCAATGGTTTGA	1	-	137737705-137737705:137737706-137737754	1q31	PREDICTED: Rattus norvegicus RGD1566010 (predicted) (RGD1566010_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978708-S	ILMN_276009	BCAR1	NM_012931.1	NM_012931.1		25414	6978708	NM_012931.1	Bcar1	NP_037063.1	ILMN_1364063	0003990066	S	2864	ACATGGTAGACAGGGTCAAGGAGCTAGGCCACAGCACTCAGCAGTTCCGC	19	-	41646610-41646659	19q12	Rattus norvegicus breast cancer anti-estrogen resistance 1 (Bcar1), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IMP]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [pmid 8662921] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IMP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [pmid 9325334] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [pmid 9627109] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [pmid 8631760] [evidence IDA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with any protein phosphatase [goid 19903] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 8940134] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Crkas; P130CAS; Cas	Crkas; P130CAS; Cas
Rattus norvegicus	RefSeq	GI_19424253-S	ILMN_300050	ANGPTL2	NM_133569.1	NM_133569.1		171100	19424253	NM_133569.1	Angptl2	NP_598253.1	ILMN_1350266	0004050112	S	1985	CTCCAAGTGGCTGTCAGATGATGGAGATGAAAGGGCTTCTCTGCCCCTCC	3	+	12256252-12256301	3p11	Rattus norvegicus angiopoietin-like 2 (Angptl2), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644319-S	ILMN_268744	RGD1561815_PREDICTED	XM_001076371.1	XM_001076371.1		295472	109467614	XM_001076371.1	RGD1561815_predicted	XP_001076371.1	ILMN_1366355	0000840537	S	486	GCCTGAGCTGCTGGAGCCCAGTCCATATGAATTCATGGCCTAATGTACAC				2q42	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561815_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654549-S	ILMN_293425	LZTFL1	NM_001024266.1	NM_001024266.1		316102	66730444	NM_001024266.1	Lztfl1	NP_001019437.1	ILMN_1355269	0004590110	S	754	GGAAAACCTAGCAGCAGCCAAACATGACCTCCTCAGAGTACAGGAGCAGC	8	-	128477293-128477342	8q32	Rattus norvegicus leucine zipper transcription factor-like 1 (Lztfl1), mRNA.				MGC108960	MGC108960
Rattus norvegicus	RefSeq	GI_62658296-S	ILMN_298332	RGD1562451_PREDICTED	XR_008296.1	XR_008296.1		288398	109496392	XR_008296.1	RGD1562451_predicted		ILMN_1369019	0003390438	S	1102	TCGAGCAGCTGAAGCAGGAGAGCTGAAGCGGTACCAGGGAGTGAATCTCT				12p12	PREDICTED: Rattus norvegicus similar to Pabpc4_predicted protein (predicted) (RGD1562451_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663803-S	ILMN_272099	FBXO18_PREDICTED	XM_001069012.1	XM_001069012.1		291293	109506136	XM_001069012.1	Fbxo18_predicted	XP_001069012.1	ILMN_1370695	0005360070	S	3604	GTGGGGCAGTGCAACAACACCATCCCTGTGGACACCATCCTTACCATGAG				17q12.3	PREDICTED: Rattus norvegicus F-box only protein 18 (predicted) (Fbxo18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638981	ILMN_53814	GM1961_PREDICTED	XM_218177.4	XM_218177.4		292531	109457915	XM_218177.4	Gm1961_predicted	XP_218177.4	ILMN_1651068	0003830047	S	2048	CAGACCCTGGAAGAAGGTTGAGAAATGTCCTGGTGTCAGGGACACCCAAT	1	-	63450515-63450564	1q12	PREDICTED: Rattus norvegicus gene model 1961, (NCBI) (predicted) (Gm1961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657685-S	ILMN_279703	LCA5L	NM_001017484.1	NM_001017484.1		498065	62945323	NM_001017484.1	Lca5l	NP_001017484.1	ILMN_1361445	0006660687	S	1862	CTCCATCCAGGCCTCGCCCCCCGAAGCCAACAGGAAGACTGCTGTTTAAA	11	-	36468744-36468745:36468746-36468793	11q11	Rattus norvegicus Leber congenital amaurosis 5-like (Lca5l), mRNA.					
Rattus norvegicus	RefSeq	GI_62645516-S	ILMN_281025	RGD1560583_PREDICTED	XM_001080076.1	XM_001080076.1		362187	109470464	XM_001080076.1	RGD1560583_predicted	XP_001080076.1	ILMN_1363657	0002850609	S	1110	GAAGAGCAGTAGAGAAGCAGTGAAGAAGAGTAACCGACCTGCCACGAGCC				3q33	PREDICTED: Rattus norvegicus similar to 2810027O19Rik protein (predicted) (RGD1560583_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638958-S	ILMN_52511	GLTSCR1_PREDICTED	XM_214817.3	XM_214817.3		292622	62638958	XM_214817.3	Gltscr1_predicted	XP_214817.3	ILMN_1350051	0000450113	S	2773	GACCAAGGTGGAAGGTGTTTGGGGACAGAGGTGTGGGGAAGAAAGGGTGC				1q21	PREDICTED: Rattus norvegicus glioma tumor suppressor candidate region gene 1 (predicted) (Gltscr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_10198601-S	ILMN_265723	TMEM27	NM_020976.1	NM_020976.1		57395	10198601	NM_020976.1	Tmem27	NP_066125.1	ILMN_1366641	0006520022	S	620	AGGGCACATTAATGATGGCTTCTTGACAGAGGATGAGCGTCTCACCCCTC	X	-	51119178-51119227	Xq21	Rattus norvegicus transmembrane protein 27 (Tmem27), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence IEA]	Nx17; MGC93468; NX-17; collectrin	Nx17; MGC93468; NX-17; collectrin
Rattus norvegicus	RefSeq	GI_62656571-S	ILMN_56677	SEZ6	XM_239260.4	XM_239260.4		192247	109488553	XM_239260.4	Sez6	XP_239260.4	ILMN_1368199	0004850315	S	3875	ATGTTATGGCAGGTACATTCTGGAGACGAGCAGATGTCCAAGGACCCAGG	10	+	64020804-64020853	10q25	PREDICTED: Rattus norvegicus seizure related 6 homolog (mouse) (Sez6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_27717686-S	ILMN_267842	ZNF494_PREDICTED	XM_234948.1	XM_234948.1		299648	27717686	XM_234948.1	Znf494_predicted	XP_234948.1	ILMN_1364124	0005670465	S	825	GTCTGAGGACACTGGGGATGGTGGTGTTATTAATCTCACAAATGAGGAAG	7	-	15778739-15778788	7q12	PREDICTED: Rattus norvegicus zinc finger protein 494 (predicted) (Znf494_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646794-S	ILMN_58833	LOC500007	XM_575361.1	XM_575361.1		500007	62646794	XM_575361.1	LOC500007	XP_575361.1	ILMN_1360186	0006350333	S	1428	CATGACATTTGTTTTGCCCAGCTCCGTGTGTGGTCGGCTGTTCAGGTGTC				4q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5430404L10 (LOC500007), mRNA.					
Rattus norvegicus	RefSeq	GI_62666309-S	ILMN_68331	SCML4_PREDICTED	XM_228308.4	XM_228308.4		309859	109509642	XM_228308.4	Scml4_predicted	XP_228308.4	ILMN_1362365	0004150279	S	1030	TCTACCTGGACCGTGGAGGACGTGGTCCGGTTTGTGAAAGATGCAGACCC	20	+	46858906-46858955	20q13	PREDICTED: Rattus norvegicus sex comb on midleg-like 4 (Drosophila) (predicted) (Scml4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114265-S	ILMN_276769	V1RC18	NM_001008956.1	NM_001008956.1		494301	57114265	NM_001008956.1	V1rc18	NP_001008956.1	ILMN_1365905	0002690300	S	314	GCCTCCTGAGTGTGTTCCAGGCTGTCACAATCAGTTCTAATACCTCACTG	4	+	86868789-86868838	4q24	Rattus norvegicus vomeronasal 1 receptor, C18 (V1rc18), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16975493-S	ILMN_280930	TAPBP	NM_033098.1	NM_033098.1		25217	16975493	NM_033098.1	Tapbp	NP_149089.1	ILMN_1353956	0003710131	S	1282	CTCCTTTTGGGCCTCTTCAAGGCACTAGGCTGGATGGCTGCCTACCTGAC	20	-	5111725-5111738:5111850-5111885	20p12	Rattus norvegicus TAP binding protein (Tapbp), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A large, multisubunit complex which consists of the MHC class I-beta 2 microglobulin dimer, the transporter associated with antigen presentation (TAP), tapasin (an MHC-encoded membrane protein), the chaperone calreticulin and the thiol oxidoreductase ERp57. Functions in the assembly of peptides with newly synthesized MHC class I molecules [goid 42824] [evidence IDA]	The aggregation, arrangement and bonding together of a set of components to form an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2397] [evidence IEP]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules [goid 2479] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules [goid 19885] [evidence IEA]; Any process involved in maintaining the structure and integrity of a peptide antigen and preventing it from being degraded [goid 50823] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence NAS]	Tapasin	Tapasin
Rattus norvegicus	RefSeq	GI_6978748-S	ILMN_296079	CYP3A3	NM_013105.1	NM_013105.1		25642	6978748	NM_013105.1	Cyp3a3	NP_037237.1	ILMN_1349230	0002350438	S	555	TGAGGCAAGAGAAAGGCAAACCTGTCCCTGTGAAAGAAGTGTTTGGTGCC	12	-	9585775-9585788:9586069-9586104	12p11	Rattus norvegicus cytochrome P450, subfamily 3A, polypeptide 3 (Cyp3a3), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RL33; CYP3A1; cDEX; CYP3A23; CYP; MGC108757	RL33; CYP3A1; cDEX; CYP3A23; CYP; MGC108757
Rattus norvegicus	RefSeq	GI_62660406	ILMN_276735	TEC	XM_001069237.1	XM_001069237.1		84492	109500470	XM_001069237.1	Tec	XP_001069237.1	ILMN_1650156	0000870332	S	2356	TGGCGCTAGTAGAAAGCCAGGGTGTTCGAGATGAGAAGGAGCCATGCCCC				14p11	PREDICTED: Rattus norvegicus tec protein tyrosine kinase, transcript variant 4 (Tec), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence TAS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928685-S	ILMN_268413	ASCL2	NM_031503.1	NM_031503.1		24209	13928685	NM_031503.1	Ascl2	NP_113691.1	ILMN_1357590	0006550070	S	1426	TTCCGAAGCCTATCCTGACGCTGATGTTTGGCCAGTGTGGGAACCCTGCT	1	-	203242169-203242218	1q41	Rattus norvegicus achaete-scute complex homolog 2 (Drosophila) (Ascl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640717-S	ILMN_50969	AKAP13	XM_214969.3	XM_214969.3		293024	62640717	XM_214969.3	Akap13	XP_214969.3	ILMN_1355689	0000070068	S	7341	CTCAGCCTGGTGGTGAGTTGTCAGAAAGGGTGATGGTCCTGCTCCAGAAG				1q31	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein 13 (Akap13), mRNA.		Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_56799437-S	ILMN_300222	YIPF3	NM_001007801.2	NM_001007801.2		301245	56799437	NM_001007801.2	Yipf3	NP_001007802.1	ILMN_1361004	0002260452	S	2029	GGAGAGCCTGCTCAGTGGTTAAACAGACACTGCTCTTCGAGGGGGAATGG	9	-	10293163-10293212	9q12	Rattus norvegicus Yip1 domain family, member 3 (Yipf3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]	The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		MGC94695; LRRGT00110; C6orf109; KLIP1; RGD1308185	MGC94695; LRRGT00110; C6orf109; KLIP1; RGD1308185
Rattus norvegicus	RefSeq	GI_6981323-S	ILMN_267638	P4HB	NM_012998.1	NM_012998.1		25506	6981323	NM_012998.1	P4hb	NP_037130.1	ILMN_1360433	0006860037	S	2338	CCAGACTGGGAGTCAGCTAAGGACACTGGGGCTGAATGAAATGCCCATTC	10	-	109950288-109950337	10q32.3	Rattus norvegicus prolyl 4-hydroxylase, beta polypeptide (P4hb), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The posttranslational modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase [goid 18401] [evidence ISS]; The posttranslational modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase [goid 18401] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IMP]; Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence ISS]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	PDIR	PDIR
Rattus norvegicus	RefSeq	GI_6978438-S	ILMN_269897	ACR	NM_012490.1	NM_012490.1		24163	6978438	NM_012490.1	Acr	NP_036622.1	ILMN_1357773	0000460014	S	1216	TACAGTGGACCTGTGAACTACCAGCACCGCTTCTCCACGTTCGAGCCCCT	7	+	127891295-127891344	7q34	Rattus norvegicus acrosin (Acr), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence TAS]; A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence IDA]; A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction [goid 43159] [evidence TAS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; The union of male and female gametes to form a zygote [goid 7338] [evidence TAS]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence TAS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism [goid 9607] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3 [goid 4040] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence ISS]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with fucose, the pentose 6-deoxygalactose [goid 42806] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Acro	Acro
Rattus norvegicus	RefSeq	GI_51948475-S	ILMN_275733	UQCRC1	NM_001004250.1	NM_001004250.1		301011	51948475	NM_001004250.1	Uqcrc1	NP_001004250.1	ILMN_1371204	0007040400	S	1408	CAACCGGATTCGCAGTGGCATGTTCTGGCTGCGCTTCTAGGCAGGAAGTC	8	+	113967516-113967553:113967554-113967565	8q32	Rattus norvegicus ubiquinol-cytochrome c reductase core protein I (Uqcrc1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93712	MGC93712
Rattus norvegicus	RefSeq	GI_62644946-S	ILMN_57018	SH2D3C_PREDICTED	XM_342414.3	XM_342414.3		362111	109468054	XM_342414.3	Sh2d3c_predicted	XP_342415.3	ILMN_1365161	0000870132	S	2656	GTGGCACACCACGGGGGCCTCTACCACACCAACGCTGAAGTCAAGCTGCA	3	+	11730030-11730079	3p11	PREDICTED: Rattus norvegicus SH2 domain containing 3C (predicted) (Sh2d3c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453391-S	ILMN_269872	A1BG	NM_022258.2	NM_022258.2		140656	25453391	NM_022258.2	A1bg	NP_071594.2	ILMN_1361746	0004230170	S	1366	CCAGGGTCAGCATGGAGCTGGTACGTGAGGGCTTTAAAACACCCTTCTGG	7	-	97799537-97799586	7q33	Rattus norvegicus alpha-1-B glycoprotein (A1bg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	C44	C44
Rattus norvegicus	RefSeq	GI_47087092-S	ILMN_264905	ZFP57	NM_213565.1	NM_213565.1		361783	47087092	NM_213565.1	Zfp57	NP_998730.1	ILMN_1350131	0004150309	S	1502	GAAGGCCCGTCTGGGAGTGATGAGGTGATGGAGGTTGACACCGACTCTGA	20	-	1612235-1612284	20p12	Rattus norvegicus zinc finger protein 57 (Zfp57), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence IEA]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IPI]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156546	MGC156546
Rattus norvegicus	RefSeq	GI_8394271-S	ILMN_265007	NUDC	NM_017271.1	NM_017271.1		29648	8394271	NM_017271.1	Nudc	NP_058967.1	ILMN_1359322	0006980039	S	980	AGTCCATGGGCTTGCCCACCTCTGATGAGCAGAAGAAACAGGAAATCCTG	5	+	151549385-151549430:151549786-151549789	5q36	Rattus norvegicus nuclear distribution gene C homolog (Aspergillus) (Nudc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Silg92; c15	Silg92; c15
Rattus norvegicus	RefSeq	GI_62643652-S	ILMN_58202	LOC502535	XM_578021.1	XM_578021.1		502535	62643652	XM_578021.1	LOC502535	XP_578021.1	ILMN_1349319	0006400519	S	435	GCATGTGAATGCATGGACCGCCGGGGCTCACTGGAAGCTATTCTGATAGT				2q31	PREDICTED: Rattus norvegicus similar to coated vesicle membrane protein (LOC502535), mRNA.					
Rattus norvegicus	RefSeq	GI_47577900-S	ILMN_283788	OLR1156	NM_001000873.1	NM_001000873.1		405171	47577900	NM_001000873.1	Olr1156	NP_001000873.1	ILMN_1361382	0003780348	S	460	ATGGATTCCCTGATGCATACTCTCATGGTACAGAGGCTATCCTTCTGCAG	8	+	17986905-17986954	8q13	Rattus norvegicus olfactory receptor 1156 (Olr1156), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1156	Olr1156
Rattus norvegicus	RefSeq	GI_62659090-S	ILMN_270541	RGD1560935_PREDICTED	XM_001080726.1	XM_001080726.1		304575	109497569	XM_001080726.1	RGD1560935_predicted	XP_001080726.1	ILMN_1355428	0003990128	S	1002	GATCCCATACTGGTGGGGCAACGCGGTGAAGACCGATGTGCTGTTGCAGT				12q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A330045H12 gene (predicted) (RGD1560935_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138622-S	ILMN_295473	BSND	NM_138979.2	NM_138979.2		192675	52138622	NM_138979.2	Bsnd	NP_620435.1	ILMN_1369817	0004210338	S	2385	TCAGTGAGAACATACCACAATCCTCCCCGCTTCTGGGGCATGTCTACCTC	5	-	127542478-127542527	5q34	Rattus norvegicus Bartter syndrome, infantile, with sensorineural deafness (Barttin) (Bsnd), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IMP]	Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence ISS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 17081] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93168	MGC93168
Rattus norvegicus	RefSeq	GI_62645544-S	ILMN_287600	AVEN_PREDICTED	XM_001080523.1	XM_001080523.1		311299	109470543	XM_001080523.1	Aven_predicted	XP_001080523.1	ILMN_1373780	0001410066	S	1434	GTTGGTTGCTGTCTGCGTGAGGGTGGGCTAATTTACCAGATCCCCCGTGC				3q34	PREDICTED: Rattus norvegicus apoptosis, caspase activation inhibitor (predicted) (Aven_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646698-S	ILMN_54266	RGD1562323_PREDICTED	XM_575338.2	XM_575338.2		499984	109471621	XM_575338.2	RGD1562323_predicted	XP_575338.1	ILMN_1355794	0006860091	S	1244	ATAAAACACACCTATCTGTAGTTGAAGAAACGGTGGTGTGCGCGCTCTCT	4	+	13553559-13553608	4q11	PREDICTED: Rattus norvegicus similar to fatty acid translocase/CD36 (predicted) (RGD1562323_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718441-S	ILMN_60338	LOC301188	XM_236868.3	XM_236868.3		301188	62718441	XM_236868.3	LOC301188	XP_236868.3	ILMN_1363660	0004010706	S	211	GGGGAGATCAAGGAGAGACCATACCAGGTTTTGGTAGGAAGGCATCATCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC301188), mRNA.					
Rattus norvegicus	RefSeq	GI_62667373-S	ILMN_58797	LOC501642	XM_577039.1	XM_577039.1		501642	62667373	XM_577039.1	LOC501642	XP_577039.1	ILMN_1361464	0006980452	S	1226	CACCGACCAGAAACTGATGGACGACAATCTAGAACCAACATCACCTCCAC				Xq35	PREDICTED: Rattus norvegicus similar to fibrous sheath interacting protein 2 (LOC501642), mRNA.					
Rattus norvegicus	RefSeq	GI_62638423-S	ILMN_48847	RGD1310121_PREDICTED	XM_341746.3	XM_341746.3		361466	109457689	XM_341746.3	RGD1310121_predicted	XP_341747.2	ILMN_1356665	0000670270	S	714	ACCTATGACCAGAAGGTGCAGGGGGGCAAGTAGCCTTACGGGCTGGAGCT	1	-	30067951-30067968:30067969-30068000	1p11	PREDICTED: Rattus norvegicus similar to 25 kDa brain-specific protein (p25-alpha) (predicted) (RGD1310121_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717842-S	ILMN_51342	LOC503295	XM_578831.1	XM_578831.1		503295	62717842	XM_578831.1	LOC503295	XP_578831.1	ILMN_1365073	0004730537	S	810	GCCAGTGTTCCTGTTTGGTTTCTGAGTCCTTCCTGCAGAGGGGAGCCTAG					PREDICTED: Rattus norvegicus similar to Homeobox protein engrailed-1 (Mo-En-1) (LOC503295), mRNA.					
Rattus norvegicus	RefSeq	GI_62659496-S	ILMN_50727	LAMC1	XM_341133.3	XM_341133.3		117036	109498029	XM_341133.3	Lamc1	XP_341134.2	ILMN_1355835	0004570113	S	4910	AAGGTGTCCAACCTGGAGAACGAGGCCCGGAAGCAGGAGGCAGCCATCTT	13	-	68244129-68244178	13q21	PREDICTED: Rattus norvegicus laminin, gamma 1 (Lamc1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence IEA]; A laminin complex composed of alpha1, beta1 and gamma1 polypeptide chains [goid 5606] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A laminin complex composed of alpha5, beta1 and gamma1 polypeptide chains [goid 43259] [evidence ISS]; A laminin complex composed of alpha5, beta1 and gamma1 polypeptide chains [goid 43259] [evidence IEA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; A process that results in the breakdown of the extracellular matrix [goid 22617] [evidence ISS]; A process that results in the breakdown of the extracellular matrix [goid 22617] [evidence IEA]; Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina [goid 31581] [evidence ISS]; Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina [goid 31581] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646562-S	ILMN_68883	LOC362290	XM_342604.2	XM_342604.2		362290	62646562	XM_342604.2	LOC362290	XP_342605.1	ILMN_1361943	0001170671	S	9	GGAAAGAAGGCCAAGGGGAAGAAGGTGGTCCTGGCCCCTGCCGTGGTCAG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC362290), mRNA.					
Rattus norvegicus	RefSeq	GI_62652561-S	ILMN_52296	RGD1308133_PREDICTED	XM_235409.4	XM_235409.4		315069	109480863	XM_235409.4	RGD1308133_predicted	XP_235409.4	ILMN_1364913	0002030292	S	4458	CCAGAGTGGAGTAGAAGGAAAGTGGAGGGTGTGGAGGGATGAAGCTGGGG	7	-	109158530-109158579	7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700010C24 (predicted) (RGD1308133_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981481-S	ILMN_49821	RPL32	NM_013226.2	NM_013226.2		28298	82617570	NM_013226.2	Rpl32	NP_037358.1	ILMN_1351626	0000520138	S	428	CCCAACGCCAGGCTACGCAGCGAAGAGAATGAATAGATGGCTTGTGTGCC				6q33	Rattus norvegicus ribosomal protein L32 (Rpl32), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72905	MGC72905
Rattus norvegicus	RefSeq	GI_62646370-S	ILMN_276002	ZFP335	XM_001070873.1	XM_001070873.1		259270	109471321	XM_001070873.1	Zfp335	XP_001070873.1	ILMN_1375216	0004010619	S	4379	TCCAGTATGTACCTGTATCCCCCAGCCAGCAGCTTGTCACCCAGGCTCAG				3q42	PREDICTED: Rattus norvegicus zinc finger protein 335, transcript variant 2 (Zfp335), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662250-S	ILMN_58244	RGD1564875_PREDICTED	XM_573863.2	XM_573863.2		498587	109503088	XM_573863.2	RGD1564875_predicted	XP_573863.2	ILMN_1352016	0001980070	S	1971	GCTGGTGACAAGTTTATCGAGGCATTGGGGCACACCTGGCACGACACCTG	16	-	10195507-10195556	16p16-p15	PREDICTED: Rattus norvegicus similar to mKIAA0613 protein (predicted) (RGD1564875_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645522-S	ILMN_281990	RGD1311652_PREDICTED	XM_001080126.1	XM_001080126.1		362188	109470476	XM_001080126.1	RGD1311652_predicted	XP_001080126.1	ILMN_1357362	0004570050	S	1791	CCTACCTTTACTTCAGTGCTGTGGGCTGCCTGGGATGTATAGCTGCTGGA				3q33	PREDICTED: Rattus norvegicus similar to MGC52019 protein (predicted) (RGD1311652_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658104-S	ILMN_48565	LOC288071	XM_221412.2	XM_221412.2		288071	62658104	XM_221412.2	LOC288071	XP_221412.2	ILMN_1361859	0006100113	S	72	GGGGCTAGACCTGCCACACCAGAAATCTACCTTGCTGACAAAGTCAGAGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010005H15 (predicted) (LOC288071), mRNA.					
Rattus norvegicus	RefSeq	GI_62639893-S	ILMN_68695	LOC292884	XM_218619.3	XM_218619.3		292884	62639893	XM_218619.3	LOC292884	XP_218619.3	ILMN_1367565	0000610575	S	2609	TGAACGAGTCTGGGCAGGGCGAAAGGGAGATGTGGAGAAAAGCAGACCCC				1q22	PREDICTED: Rattus norvegicus similar to Zinc finger protein 184 (predicted) (LOC292884), mRNA.					
Rattus norvegicus	RefSeq	GI_62647854-S	ILMN_291294	MAGI1	NM_001030045.1	NM_001030045.1		500261	71795663	NM_001030045.1	Magi1	NP_001025216.1	ILMN_2039915	0002810224	S	534	AGTCGGCACCTATGAAGGAAACTATTATGGGACACCCAAACCTCCCAGCC	4	-	128102674-128102707:128126042-128126057	4q34	Rattus norvegicus membrane associated guanylate kinase, WW and PDZ domain containing 1 (Magi1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928733-S	ILMN_291952	CYP2E1	NM_031543.1	NM_031543.1		25086	13928733	NM_031543.1	Cyp2e1	NP_113731.1	ILMN_1358592	0005220301	S	1413	GGATATCGACCTCAGTCCTGTCACAGTTGGCTTTGGCAGTATCCCACCCC	1	+	200928706-200928755	1q41	Rattus norvegicus cytochrome P450, family 2, subfamily e, polypeptide 1 (Cyp2e1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IDA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence NAS]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IC ]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IDA]	Cyp2e	Cyp2e
Rattus norvegicus	RefSeq	GI_16758437-S	ILMN_58077	BANF1	NM_053631.2	NM_053631.2		114087	84042527	NM_053631.2	Banf1	NP_446083.1	ILMN_1364653	0004230487	S	585	CCATGGCAGCAGTTCCCAGCCTTCCTGAATGGATTACTGCCTCCTTCTCC	1	-	208008441-208008490	1q43	Rattus norvegicus barrier to autointegration factor 1 (Banf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process by which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome [goid 15074] [evidence ISS]; The process by which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome [goid 15074] [evidence IEA]; The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; Any process that modulates the rate or extent of the viral life cycle, the set of processes by which a virus reproduces and spreads among hosts [goid 50792] [evidence TAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	L2bp1/Baf; Bcrp1; MGC105365; Baf; L2bp1	L2bp1/Baf; Bcrp1; MGC105365; Baf; L2bp1
Rattus norvegicus	RefSeq	GI_8394002-S	ILMN_48235	POU3F4	NM_017252.2	NM_017252.2		29589	82617573	NM_017252.2	Pou3f4	NP_058948.1	ILMN_1351748	0002650347	S	1044	CCGCCAGGGGATCAGCAGCCACACGAGGTTTATTCGCACACGGTGAAAAC	X	+	99215489-99215538	Xq31	Rattus norvegicus POU class 3 homeobox 4 (Pou3f4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IDA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron that will reside in the forebrain [goid 21879] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEA]	Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA) [goid 3680] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	RHS2	RHS2
Rattus norvegicus	RefSeq	GI_31343496-S	ILMN_288095	IGSF1	NM_175763.2	NM_175763.2		302822	31343496	NM_175763.2	Igsf1	NP_786939.1	ILMN_1358744	0003800292	S	4248	CACCTGAGTTGGGTCAAGAGGGTTCTGGGAGTGACAAGTTCTACCAGGTC	X	-	136291302-136291351	Xq36	Rattus norvegicus immunoglobulin superfamily, member 1 (Igsf1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger, and in cooperation with a nearby primary receptor, initiating a change in cell activity [goid 15026] [evidence IDA]; Interacting selectively with inhibin beta-A [goid 48186] [evidence ISS]; Interacting selectively with inhibin beta-B [goid 48187] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Inhbp	Inhbp
Rattus norvegicus	RefSeq	GI_27668863-S	ILMN_161735	LOC301803	XM_229279.1	XM_229279.1			27668863	XM_229279.1	LOC301803		ILMN_2040012	0000240438	S	392	GGGTGGTCCTAGCCCAGGTACCGATCATGAAGGACTGGTTTTACATCACC										
Rattus norvegicus	RefSeq	GI_62642999	ILMN_301073	C9	NM_057146.1	NM_057146.1		117512	16924005	NM_057146.1	C9	NP_476487.1	ILMN_1651040	0002370139	S	1818	CCCCAGGACTTTCCAACTTAGCATCCTACCCTAGAGCGAATCCTCACTGC	2	+	55790872-55790921	2q16	Rattus norvegicus complement component 9 (C9), mRNA.	A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow [goid 5579] [evidence TAS]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IDA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence TAS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IMP]			
Rattus norvegicus	RefSeq	GI_62652033-S	ILMN_48958	LOC500824	XM_576214.1	XM_576214.1		500824	62652033	XM_576214.1	LOC500824	XP_576214.1	ILMN_1354536	0000050280	S	4241	GCCGTGTGAAAACGAACACTGCCAAGACAAGTCCACCCACCGTCGTTGTG				7q13	PREDICTED: Rattus norvegicus similar to FYVE, RhoGEF and PH domain containing 6 (LOC500824), mRNA.					
Rattus norvegicus	RefSeq	GI_20302120-S	ILMN_65395	CRKRS	NM_138916.2	NM_138916.2		192350	76563914	NM_138916.2	Crkrs	NP_620271.1	ILMN_1372530	0004200021	S	3777	CGAAGAACCCCTACAATGCCACAGGAGGAGGCAGCAGGTAAACAGACCGG	10	+	87021992-87022041	10q31	Rattus norvegicus Cdc2-related kinase, arginine/serine-rich (Crkrs), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Pksc; Cdk12; Crk7	Pksc; Cdk12; Crk7
Rattus norvegicus	RefSeq	GI_62655673-A	ILMN_264901	OLR1362	NM_001006598.1	NM_001006598.1		363546	54635067	NM_001006598.1	Olr1362	NP_001006598.1	ILMN_1376924	0000670079	S	800	CAGCTGGGAGGGATACGGCAGCTGCAGTGATGTATACAGTGGTGACCCCA	10	-	12236833-12236882	10q12	Rattus norvegicus olfactory receptor 1362 (Olr1362), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663996-S	ILMN_67359	RGD1565321_PREDICTED	XM_344642.3	XM_344642.3		364801	109505324	XM_344642.3	RGD1565321_predicted	XP_344643.1	ILMN_1374913	0004760397	S	771	TCAGACACCATCTCAAAGGACTAAGCAGGACAATGATACAGCAGGACACC	17	-	97255296-97255345	17q12.3	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (predicted) (RGD1565321_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14091757-S	ILMN_264992	SYNJ2	NM_032071.1	NM_032071.1		84018	14091757	NM_032071.1	Synj2	NP_114460.1	ILMN_1358087	0004730091	S	4783	AAGCTTGCTCTCAGGACACTGGGAAATGTGCTGTTGCATTCGGGATATGG				1q11	Rattus norvegicus synaptojanin 2 (Synj2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A microtubule in the axoneme of a cilium or flagellum; an axoneme contains nine modified doublet microtubules surrounding a pair of single microtubules [goid 5879] [evidence IDA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IDA]; Loosely bound to one surface of the mitochondrial outer membrane, but not integrated into the hydrophobic region [goid 31315] [evidence IDA]; The portion of the plasma membrane surrounding a ruffle [goid 32587] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence TAS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process of removing a phosphate group from any mono- or polyphosphorylated inositol [goid 46855] [evidence IDA]; The process of removing one or more phosphate groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46856] [evidence IMP]; Any process that establish the spatial arrangement of mitochondria within the cell [goid 48312] [evidence IDA]	Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IMP]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate [goid 4439] [evidence ISS]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence TAS]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IDA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate [goid 4439] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663307-S	ILMN_288822	NOL8_PREDICTED	XM_001056049.1	XM_001056049.1		361221	109505546	XM_001056049.1	Nol8_predicted	XP_001056049.1	ILMN_1363348	0002850019	S	3983	GCCTCAGCACTTTAGAAGGGGAAGTGCGTGGATCATTTGAGCCTGGAGTT				17p14	PREDICTED: Rattus norvegicus nucleolar protein 8 (predicted) (Nol8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647300-S	ILMN_60337	RGD1566107_PREDICTED	XM_575483.2	XM_575483.2		500131	109472076	XM_575483.2	RGD1566107_predicted	XP_575483.2	ILMN_1357176	0006840576	S	1983	CCTAGATGTCAAGTGAGATGGATCCACACAGTAACTTGCTGGGAAAGCTC	4	+	82031902-82031951	4q24	PREDICTED: Rattus norvegicus similar to cAMP responsive element binding protein 5 (predicted) (RGD1566107_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648255-S	ILMN_278629	LOH12CR1_PREDICTED	XM_001069714.1	XM_001069714.1		362452	109474378	XM_001069714.1	Loh12cr1_predicted	XP_001069714.1	ILMN_1365387	0002060692	S	544	GCCATCCTGCGCCGTATCCAGATGGGCATAGACCAGACGGTGCCACTCAT				4q43	PREDICTED: Rattus norvegicus loss of heterozygosity, 12, chromosomal region 1 homolog (human) (predicted) (Loh12cr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665726-A	ILMN_285844	FKBP5	NM_001012174.1	NM_001012174.1		361810	58865919	NM_001012174.1	Fkbp5	NP_001012174.1	ILMN_1376629	0005270021	S	3269	AGATGTCTTCACACCCTGAGCCTGGAGAGAGTGGTGGGTAAGCAGATGAC	20	-	6637637-6637686	20p12	Rattus norvegicus FK506 binding protein 5 (Fkbp5), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57164108-S	ILMN_300951	KRCC1	NM_001009413.1	NM_001009413.1		312437	57164108	NM_001009413.1	Krcc1	NP_001009413.1	ILMN_1353188	0005080193	S	1002	GGTGAAGAAAGGACAGAGGAGGAGATGCTTTGGGACCAGTCTATCCTTGG	4	+	104496235-104496284	4q33	Rattus norvegicus lysine-rich coiled-coil 1 (Krcc1), mRNA.				MGC105762	MGC105762
Rattus norvegicus	RefSeq	GI_38454205-S	ILMN_295027	PSMD6	NM_198730.1	NM_198730.1		289924	38454205	NM_198730.1	Psmd6	NP_942025.1	ILMN_1366159	0002340239	S	1004	TGGCAGAAGCATTTGGTGTGGGTGTGGAATTCATCGACCAGGAACTGTCC	15	+	12658455-12658489:12660095-12660109	15p16	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 (Psmd6), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	P44s10; MGC72968	P44s10; MGC72968
Rattus norvegicus	RefSeq	GI_62647493-S	ILMN_69331	LOC502781	XM_578279.1	XM_578279.1		502781	62647493	XM_578279.1	LOC502781	XP_578279.1	ILMN_1371085	0001660193	S	62	GCAGGATCTCAGAGGATCTGGCTCACAGTATTACTATACCTCCACATCGC				4q24	PREDICTED: Rattus norvegicus similar to vomeronasal V1r-type receptor V1rc43 (LOC502781), mRNA.					
Rattus norvegicus	RefSeq	GI_62649573-S	ILMN_59111	LOC500541	XM_575902.1	XM_575902.1		500541	62649573	XM_575902.1	LOC500541	XP_575902.1	ILMN_1365208	0000580546	S	1355	GACTGTGCATACGGGACTGAAGGCCTATGAGTGTAAGCGTTGTGGGAAAG					PREDICTED: Rattus norvegicus similar to novel zinc finger protein (LOC500541), mRNA.					
Rattus norvegicus	RefSeq	GI_62661410-S	ILMN_63321	LOC498508	XM_224098.2	XM_224098.2		498508	62661410	XM_224098.2	LOC498508	XP_224098.1	ILMN_1374016	0004480041	S	35	CCTAATACTCAGAAGGAGCAATGGAGACTCAGTGACCCAGACAGAAGGCC					PREDICTED: Rattus norvegicus similar to TCRVA8 (LOC498508), mRNA.					
Rattus norvegicus	RefSeq	GI_62656269-S	ILMN_57317	CCDC42_PREDICTED	XM_220585.3	XM_220585.3		303234	109488347	XM_220585.3	Ccdc42_predicted	XP_220585.1	ILMN_1359454	0005340082	S	739	CTGGGAATCTCGCTGGGCACACATCCAAAACACAGCAGCCAAGAAGACCC	10	+	55346449-55346452:55346697-55346742	10q24	PREDICTED: Rattus norvegicus coiled-coil domain containing 42 (predicted) (Ccdc42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639890-S	ILMN_270750	RGD1560588_PREDICTED	XM_001080571.1	XM_001080571.1		502337	109461864	XM_001080571.1	RGD1560588_predicted	XP_001080571.1	ILMN_1372111	0001780575	S	788	ATGTGTGGGTGTTGCGGAGACCACTGGGGCTCACTCTGCTGGGATCAACT				1q22	PREDICTED: Rattus norvegicus similar to seven transmembrane helix receptor (predicted) (RGD1560588_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639361-S	ILMN_51327	COX6B_PREDICTED	XM_344879.2	XM_344879.2		365227	62639361	XM_344879.2	Cox6b_predicted	XP_344880.2	ILMN_1373858	0000870673	S	782	ATTTCTACACCATTCTCTGAGGAGGAAGGGGGACCACAGATGCACGCAGC				1q21	PREDICTED: Rattus norvegicus cytochrome c oxidase, subunit VIb (predicted) (Cox6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13994165-S	ILMN_287170	CYP2C12	NM_031572.1	NM_031572.1		25011	13994165	NM_031572.1	Cyp2c12	NP_113760.1	ILMN_1357069	0006380735	S	1304	GTGTGGGAGAGGGCCTTGCCAGTATGGAGCTGTTTTTGTTCCTGACCACC	Un|NW_047854.1	+	215003-215052		Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 12 (Cyp2c12), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	Cyp2c12; P450pb1; RATP4515B8; RATP4515B2; Cyp2c40	Cyp2c12; P450pb1; RATP4515B8; RATP4515B2; Cyp2c40
Rattus norvegicus	RefSeq	GI_51948431-S	ILMN_276137	EMCN	NM_001004228.1	NM_001004228.1		295490	51948431	NM_001004228.1	Emcn	NP_001004228.1	ILMN_1353553	0006980576	S	1158	CTAGACTTCCGGGTTTTATAGCCGCGATCTGTGGAGACTTGCCTGTTTTC	2	+	234971991-234972040	2q43	Rattus norvegicus endomucin (Emcn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]	Interacting selectively with any carbohydrate [goid 30246] [evidence ISS]; Interacting selectively with any carbohydrate [goid 30246] [evidence ISS]	MGC94175	MGC94175
Rattus norvegicus	RefSeq	GI_62646413-S	ILMN_280075	KCNG1	XM_001072764.1	XM_001072764.1		296395	109471369	XM_001072764.1	Kcng1	XP_001072764.1	ILMN_1362431	0004780368	S	2431	CGGGGTGGGGGACACCAACAAGCCGGTCATCTCTGCTGTTTCAAAGGTGA				3q42	PREDICTED: Rattus norvegicus potassium voltage-gated channel, subfamily G, member 1 (Kcng1), mRNA.					
Rattus norvegicus	RefSeq	GI_62649300-S	ILMN_272187	DNAJC6_PREDICTED	XM_001056966.1	XM_001056966.1		313409	109476802	XM_001056966.1	Dnajc6_predicted	XP_001056966.1	ILMN_1369280	0006550524	S	5180	TAGCAATGAGAAAGAACCCCTCCTTAAATCTGGGAGTTTCCCCACCGCTC				5q33	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 6 (predicted), transcript variant 3 (Dnajc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651294-S	ILMN_279295	LOC500726	XM_001072852.1	XM_001072852.1		500726	109480044	XM_001072852.1	LOC500726	XP_001072852.1	ILMN_1358126	0003520368	S	4443	AGGCCGGGCATGGGAGGACTTAGAGGCCAGAATCAACGCTGAGAATGAAG				6q32	PREDICTED: Rattus norvegicus similar to KARP-1 binding protein 1 (LOC500726), mRNA.					
Rattus norvegicus	RefSeq	GI_62663774-S	ILMN_270262	RGD1564865_PREDICTED	XM_001068218.1	XM_001068218.1		498789	109506115	XM_001068218.1	RGD1564865_predicted	XP_001068218.1	ILMN_1368626	0004480047	S	1024	GACCTTGCTGCTACTGCTGGAGGTGATGCTAATGCGACACGGCCCTTCTG				17q12.3	PREDICTED: Rattus norvegicus similar to 20-alpha-hydroxysteroid dehydrogenase (predicted) (RGD1564865_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657438	ILMN_63750	MGAT5B_PREDICTED	XM_221136.4	XM_221136.4		303693	109489421	XM_221136.4	Mgat5b_predicted	XP_221136.4	ILMN_1651130	0000940592	S	2802	CAAGATGCGTTCCTCAGGCTGCAGGTGCCCTGTGACAGCACAGAGTGGGA	10	+	107087529-107087545:107087884-107087916	10q32.3	PREDICTED: Rattus norvegicus mannoside acetylglucosaminyltransferase 5, isoenzyme B (predicted) (Mgat5b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660998-S	ILMN_280657	USP54	NM_001008863.1	NM_001008863.1		408223	57114307	NM_001008863.1	Usp54	NP_001008863.1	ILMN_2040306	0007210753	S	956	ATGATGCTCATGTCAAGGAGATTGGTCCGAAGTGGAAGGACGTGGTGACC	15	+	3945389-3945408:3947737-3947766	15p16	Rattus norvegicus ubiquitin specific protease 54 (Usp54), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638513-S	ILMN_296329	LOC497729	XM_001066861.1	XM_001066861.1		497729	109460736	XM_001066861.1	LOC497729	XP_001066861.1	ILMN_1368558	0003360161	S	900	ACAGTACCTACAGCCACAGTCCCAGCAGAGGTACCAGCCACAGCAGGACA					PREDICTED: Rattus norvegicus similar to transcription factor 1 (LOC497729), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638511-S	ILMN_296329	LOC497729	XM_001066861.1	XM_001066861.1		497729	109460736	XM_001066861.1	LOC497729	XP_001066861.1	ILMN_1350121	0004480273	S	6746	GTTTCTGTATGTATAAAGTCATGCTCTGTTGGGAGGGCAGCTGGTCCCAG					PREDICTED: Rattus norvegicus similar to transcription factor 1 (LOC497729), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31543323-S	ILMN_280989	NMUR2	NM_022275.2	NM_022275.2		64042	31543323	NM_022275.2	Nmur2	NP_071611.2	ILMN_1373139	0001230390	S	1265	TCCACAACACCAACCTTACCATGGCCCCCTGTGCGGGAGAGGTACCATGA				10q22	Rattus norvegicus neuromedin U receptor 2 (Nmur2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The specific actions of an organism that are triggered by the detection of dietary excess and result in a decreased intake of food [goid 2023] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence IEA]; A series of molecular signals that leads to the upregulation of calcium-dependent phospholipase A2 activity in response to the signal [goid 43006] [evidence ISS]; A series of molecular signals that leads to the upregulation of calcium-dependent phospholipase A2 activity in response to the signal [goid 43006] [evidence IEA]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence ISS]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence ISS]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]	Combining with neuromedin U to initiate a change in cell activity [goid 1607] [evidence ISS]; Combining with neuromedin U to initiate a change in cell activity [goid 1607] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of chloride by a channel that opens in response to stimulus by a calcium ion or ions. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 5229] [evidence ISS]; Catalysis of the transmembrane transfer of chloride by a channel that opens in response to stimulus by a calcium ion or ions. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 5229] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence IDA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence ISS]	Nmu2r; FM-4	Nmu2r; FM-4
Rattus norvegicus	RefSeq	GI_62663112-S	ILMN_58153	LOC502108	XM_580238.1	XM_580238.1		502108	62663112	XM_580238.1	LOC502108	XP_580238.1	ILMN_1353501	0002190035	S	737	CCTGGATCTTGCTGTTTAAGCTAGGCTGACATGGGTCCTCTCACCCAGAC					PREDICTED: Rattus norvegicus LOC502108 (LOC502108), mRNA.					
Rattus norvegicus	RefSeq	GI_62079198-S	ILMN_293522	SSBP4	NM_001014236.1	NM_001014236.1		364534	62079198	NM_001014236.1	Ssbp4	NP_001014258.1	ILMN_1358171	0007000746	S	1406	GAGCTATCACAGGGCTGGGGGGTAAGGGCAGGGGTTCTGCCAATAAATGC	16	+	19345033-19345082	16p14	Rattus norvegicus single stranded DNA binding protein 4 (Ssbp4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662187-S	ILMN_263994	TNNC1	NM_001034105.1	NM_001034105.1		290561	77627991	NM_001034105.1	Tnnc1	NP_001029277.1	ILMN_1354862	0004230239	S	357	GATGCTGCAGGCCACAGGTGAGACCATCACGGAAGATGACATCGAAGAGC	16	+	6642116-6642165	16p16	Rattus norvegicus troponin C type 1 (slow) (Tnnc1), mRNA.	A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IEA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IDA]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IDA]	A process whereby force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. This process occurs in the diaphragm. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The diaphragm is a striated muscle that is necessary for the process of respiratory gaseous exchange [goid 2086] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IDA]; Any process that modulates the velocity of muscle filament sliding [goid 32972] [evidence ISS]; Any process that modulates the rate of ATP hydrolysis by an ATPase [goid 43462] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IMP]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IEA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence IEA]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence ISS]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence IEA]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]	Tncc	Tncc
Rattus norvegicus	RefSeq	GI_62641913-S	ILMN_299037	RGD1562884_PREDICTED	XR_009107.1	XR_009107.1		499323	109463636	XR_009107.1	RGD1562884_predicted		ILMN_1349858	0003710195	S	1485	TAATAAACTGCGGGCTCGACATGCACAGGAGGGTATGTGGTATGGGGTGG				1q43	PREDICTED: Rattus norvegicus similar to CCTeta, eta subunit of the chaperonin containing TCP-1 (CCT) (predicted) (RGD1562884_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506874-S	ILMN_265340	SMAD4	NM_019275.1	NM_019275.1		50554	9506874	NM_019275.1	Smad4	NP_062148.1	ILMN_1354280	0004780161	S	2928	TGATCCCTTGGTGGTGACTTTGTAGACGTTGAAGTAGAAGCGTGGGACGC				18q12.2	Rattus norvegicus MAD homolog 4 (Drosophila) (Smad4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence ISS]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence IEA]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IPI]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]	Madh4	Madh4
Rattus norvegicus	RefSeq	GI_62642756-S	ILMN_269369	LOC681994	XM_001057688.1	XM_001057688.1		681994	109465793	XM_001057688.1	LOC681994	XP_001057688.1	ILMN_1357002	0005340014	S	1901	TCCTTCCTTGGTCCTGGTATGGAAGGATCACTCTGCGGTCAGAGCTGCTG					PREDICTED: Rattus norvegicus similar to developmental endothelial locus-1 isoform b, transcript variant 2 (LOC681994), mRNA.		The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642526-S	ILMN_68699	RGD1565768_PREDICTED	XM_217645.4	XM_217645.4		307989	109460284	XM_217645.4	RGD1565768_predicted	XP_217645.4	ILMN_1374175	0006130309	S	1393	GAGGGCGCAACAAAATCCTGAGAGATGTGGATAGAACCCGGCTGGAGCGC	1	-	263380946-263380949:263382808-263382853	1q55	PREDICTED: Rattus norvegicus similar to actin-binding LIM protein 1 long isoform (predicted) (RGD1565768_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664420-S	ILMN_50221	SNX2_PREDICTED	XM_214539.4	XM_214539.4		291464	109506625	XM_214539.4	Snx2_predicted	XP_214539.4	ILMN_1374102	0006130139	S	1588	GGAGGCATTCCTACCTGAAGCCAAAGCCATTGCCTAGCGTTATCCCCGTT	18	+	48683989-48684025:48684026-48684038	18q11	PREDICTED: Rattus norvegicus sorting nexin 2 (predicted) (Snx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655272-S	ILMN_53764	CUL3_PREDICTED	XM_217454.3	XM_217454.3		301555	62655272	XM_217454.3	Cul3_predicted	XP_217454.2	ILMN_1373249	0002120400	S	3837	AGATGTGCTTTGTGCTGGAGATTCGTGTCCGTTACTCTGTGCTTCCAGAG				9q34	PREDICTED: Rattus norvegicus cullin 3 (predicted) (Cul3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664352-S	ILMN_286594	RGD1561988_PREDICTED	XM_001055717.1	XM_001055717.1		307449	109514050	XM_001055717.1	RGD1561988_predicted	XP_001055717.1	ILMN_1373841	0001340500	S	912	GTCCCCGAATTTTGGCACTTCTACAGGCGGAAGCTATCTAGAGCTGGCCA				18q11	PREDICTED: Rattus norvegicus similar to Colorectal mutant cancer protein (MCC protein) (predicted) (RGD1561988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664350-S	ILMN_286594	RGD1561988_PREDICTED	XM_001055717.1	XM_001055717.1		307449	109514050	XM_001055717.1	RGD1561988_predicted	XP_001055717.1	ILMN_1358765	0005390195	S	3167	GACACCAGCAGTCGGCAGAGTTTGTTAATGACCTGAAACGGGCCAACAGC				18q11	PREDICTED: Rattus norvegicus similar to Colorectal mutant cancer protein (MCC protein) (predicted) (RGD1561988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27689534-S	ILMN_280283	LOC681314	XM_001061020.1	XM_001061020.1		681314	109489050	XM_001061020.1	LOC681314	XP_001061020.1	ILMN_1349047	0004480575	S	242	CAACATGGTGCTGCAGAGGATGGTTGCTGATGTGGATACAGACTCCCCCC	10	+	90628323-90628372	10q32.1	PREDICTED: Rattus norvegicus similar to BAX protein, cytoplasmic isoform delta, transcript variant 2 (LOC681314), mRNA.		Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62638446-S	ILMN_49906	LOC499002	XM_574295.1	XM_574295.1		499002	62638446	XM_574295.1	LOC499002	XP_574295.1	ILMN_1351329	0006400279	S	53	GGACAACCCAGAAGTAGTATACAGAGAACATGCTGCCACACAGAATACTG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC499002), mRNA.					
Rattus norvegicus	RefSeq	GI_47578036-S	ILMN_277505	OLR1058	NM_001000066.1	NM_001000066.1		288832	47578036	NM_001000066.1	Olr1058	NP_001000066.1	ILMN_1361540	0002470136	S	14	CAGAGGTGACAGTTTTCATCCTAGCAGGTTTGACTGATGACCCACGGTGT	7	-	7924413-7924462	7q11	Rattus norvegicus olfactory receptor 1058 (Olr1058), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1058	Olr1058
Rattus norvegicus	RefSeq	GI_9506986-S	ILMN_294475	PPT2	NM_019367.1	NM_019367.1		54398	9506986	NM_019367.1	Ppt2	NP_062240.1	ILMN_1366813	0007050204	S	1546	GCCTAGGTTCTTTGAGGCCCCAGCCCCTCTTTTAACCACCCTTGAGTGGG	20	+	4234563-4234612	20p12	Rattus norvegicus palmitoyl-protein thioesterase 2 (Ppt2), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence ISS]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence IEA]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence IEA]; Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein [goid 8474] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	PPT-2	PPT-2
Rattus norvegicus	RefSeq	GI_62659675-S	ILMN_63569	LOC497691	XM_579639.1	XM_579639.1		497691	62659675	XM_579639.1	LOC497691	XP_579639.1	ILMN_1355779	0002100364	S	6065	GGACCCTGCAAGACGGCAGCGACGACTAAGGCTTTGGGCTTATAGCTACT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_134416 (LOC497691), mRNA.					
Rattus norvegicus	RefSeq	GI_62642378-S	ILMN_61502	MRPL43_PREDICTED	XM_219938.3	XM_219938.3		309440	62642378	XM_219938.3	Mrpl43_predicted	XP_219938.1	ILMN_1365157	0000780014	S	921	CCGTGTTTGTGTGCAGTTTGGGAAACCGAAGTCGAGCCTGGCATTGGTGG				1q54	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L43 (predicted) (Mrpl43_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663267-S	ILMN_51666	LOC498708	XM_573991.1	XM_573991.1		498708	62663267	XM_573991.1	LOC498708	XP_573991.1	ILMN_1351342	0006840100	S	1433	GGAAGTCAATGAAAAACAGTCACTTTCCAGAGCCATTTCCAAGGAGCCAG					PREDICTED: Rattus norvegicus similar to round spermatids protein STDP2 (LOC498708), mRNA.					
Rattus norvegicus	RefSeq	GI_62657278-S	ILMN_264158	ABCA8B_PREDICTED	XM_001081601.1	XM_001081601.1		303637	109492135	XM_001081601.1	Abca8b_predicted	XP_001081601.1	ILMN_1359857	0004850204	S	5079	GTTCTTCAGGGATTGGAGAAAAGGGGTAAGTGCTGGATAGAGGCTGAACC				10q32.1	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 8b (predicted) (Abca8b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657280-S	ILMN_264158	ABCA8B_PREDICTED	XM_001081601.1	XM_001081601.1		303637	109492135	XM_001081601.1	Abca8b_predicted	XP_001081601.1	ILMN_1352337	0001980300	S	357	GGAGAAGGTAGCTGCTGTCCCTTTCATGGCAGGTAGAAAAGTCCTGGGAC				10q32.1	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 8b (predicted) (Abca8b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641039-S	ILMN_289034	RGD1311634_PREDICTED	XM_001067917.1	XM_001067917.1		293155	109462539	XM_001067917.1	RGD1311634_predicted	XP_001067917.1	ILMN_1365397	0003140551	S	555	GACTGACTCCAGACCACCTCAGCCTATTTTGCATCCACAGCCTCAGCCCC				1q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3200002M19 (predicted) (RGD1311634_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665705-S	ILMN_291184	NUDT3	NM_001024243.1	NM_001024243.1		294292	66730446	NM_001024243.1	Nudt3	NP_001019414.1	ILMN_1352082	0000540064	S	1859	ACCTGCCAGTTGTGGTGTTTGGTTGGGAATGGAGGGTCTGGGGAAGGGCT	20	-	5789184-5789233	20p12	Rattus norvegicus nudix (nucleotide diphosphate linked moiety X)-type motif 3 (Nudt3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105578	MGC105578
Rattus norvegicus	RefSeq	GI_53850601-S	ILMN_294154	MGC94288	NM_001005538.1	NM_001005538.1		293343	53850601	NM_001005538.1	MGC94288	NP_001005538.1	ILMN_1362203	0002230184	S	2710	CTGGGCTGAAATCCAGGACACGGGCTCCTTTTTATGTTTGGAGGCAGTGG	1	-	163111003-163111052	1q33	Rattus norvegicus similar to 4632419K20Rik protein (MGC94288), mRNA.					
Rattus norvegicus	RefSeq	GI_19424219-S	ILMN_58542	FCER2A	NM_133550.1	NM_133550.1		171075	19424219	NM_133550.1	Fcer2a	NP_598234.1	ILMN_1354903	0006760041	S	1033	GAGGCTAGGATTATGTCCCTCCCAAACTGAAGTGGCTGGTGGAGGCCAGC				12p12	Rattus norvegicus Fc receptor, IgE, low affinity II, alpha polypeptide (Fcer2a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	MGC93219; CD23	MGC93219; CD23
Rattus norvegicus	RefSeq	GI_20301957-S	ILMN_272650	SLC16A10	NM_138831.1	NM_138831.1		170566	20301957	NM_138831.1	Slc16a10	NP_620186.1	ILMN_1365262	0004560600	S	2321	CCACCATGATATGGGCGATAGAGAGGTCCCTCCCGTAGGCAGCAATCAGG	20	-	44211762-44211811	20q12	Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 10 (Slc16a10), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Tat1	Tat1
Rattus norvegicus	RefSeq	GI_62662037-S	ILMN_281751	DZIP1	XM_001078447.1	XM_001078447.1		364475	109502943	XM_001078447.1	Dzip1	XP_001078447.1	ILMN_1363254	0004920438	S	3699	TGGCTTGTTGATTTGGAGTCTCCTGTCGTCCGCCGACCGTGCCAGTAAAG				15q24	PREDICTED: Rattus norvegicus DAZ interacting protein 1 (Dzip1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656311-S	ILMN_59638	FXR2H_PREDICTED	XM_213335.4	XM_213335.4		287433	109488373	XM_213335.4	Fxr2h_predicted	XP_213335.3	ILMN_1357901	0005130609	S	3144	GGGGCCTCATCACTGTGGAAGACGGGGATAGTGAGGGTATTTGTGGGTGG	10	+	56470209-56470258	10q24	PREDICTED: Rattus norvegicus fragile X mental retardation gene 2, autosomal homolog (predicted) (Fxr2h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393486-S	ILMN_280154	GRM1	NM_017011.1	NM_017011.1		24414	8393486	NM_017011.1	Grm1	NP_058707.1	ILMN_1350833	0001170286	S	6397	GCAGTTACATCCGTCTTTCATCATTACGGGACTCGTGCATTCAGAGCCTT	1	-	5318984-5319033	1p13	Rattus norvegicus glutamate receptor, metabotropic 1 (Grm1), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [pmid 11530226] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [pmid 11530226] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEP]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IDA]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a metabotropic glutamate receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7206] [pmid 12514208] [evidence TAS]; Any process that modulates the frequency, rate or extent of the regulated release of glutamate [goid 14048] [pmid 11530226] [evidence TAS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [pmid 12514208] [evidence TAS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [pmid 12514208] [evidence TAS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 51932] [pmid 11530226] [evidence TAS]; Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51966] [pmid 11530226] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with glutamate to initiate a change in cell activity [goid 8066] [evidence TAS]; A G-protein coupled receptor that binds glutamate and is linked to the inositol 1,4,5-trisphosphate/calcium signaling system [goid 1639] [pmid 12514208] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Gprc1a	Gprc1a
Rattus norvegicus	RefSeq	GI_47577254-S	ILMN_276364	OLR392	NM_001000914.1	NM_001000914.1		405227	47577254	NM_001000914.1	Olr392	NP_001000914.1	ILMN_1353321	0002570091	S	589	CTGACTGAGACCATTGCTTTTGCCACCTCTTCTGCAGTCACACTGGTCCC	2	-	202281395-202281444	2q34	Rattus norvegicus olfactory receptor 392 (Olr392), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr392	Olr392
Rattus norvegicus	RefSeq	GI_62651392-S	ILMN_61436	LOC299458	XM_234734.2	XM_234734.2		299458	62651392	XM_234734.2	LOC299458	XP_234734.1	ILMN_1360690	0004570193	S	172	GGTGAGCTGGGTGAAGCAGAGTCATGGAAAGAGCCTTGAGTGGATTGGGG				6q33	PREDICTED: Rattus norvegicus similar to Ig H-chain V-region precursor (LOC299458), mRNA.					
Rattus norvegicus	RefSeq	GI_56090416-A	ILMN_296273	GOLPH3L	NM_001007698.1	NM_001007698.1		310669	56090416	NM_001007698.1	Golph3l	NP_001007699.1	ILMN_1376287	0006400722	S	1672	GCAACGTGCCTCAGTCACCTCCTTCATATAGCCAGCATTAGAACTTGTAG	2|NW_047645.1	-	178376-178425		Rattus norvegicus golgi phosphoprotein 3-like (Golph3l), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			MGC94181	MGC94181
Rattus norvegicus	RefSeq	GI_62654692-S	ILMN_70389	LOC317275	XM_228615.3	XM_228615.3		317275	62654692	XM_228615.3	LOC317275	XP_228615.2	ILMN_1359715	0000510324	S	2063	CTGCAGTGTTGGTGGTGCTTGTCTGCTGTGTAAGAGCCCCTGGATGAGCT				9q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500016H10 (predicted) (LOC317275), mRNA.					
Rattus norvegicus	RefSeq	Rn.26676	ILMN_281262	LOC690745	XM_001075480.1	XM_001075480.1		690745	109498332	XM_001075480.1	LOC690745	XP_001075480.1	ILMN_1530392	0006020280	S	1248	AAGGGATTATCACATCGCCCTGTTTATAATTATGGAGTAATTTTTCTATT	13	-	100747940-100747989	13q26	PREDICTED: Rattus norvegicus similar to MOCO sulphurase C-terminal domain containing 1 (LOC690745), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]		Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with molybdenum (Mo) ions [goid 30151] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665167-S	ILMN_263711	RGD1562390_PREDICTED	XR_009042.1	XR_009042.1		307797	109508799	XR_009042.1	RGD1562390_predicted		ILMN_1349233	0004570400	S	2827	GGGACCCTAGCAGAGAACATTGTGGCTCAGGCCCTTGCAGGTCTTCATGC				19q12	PREDICTED: Rattus norvegicus similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein (predicted) (RGD1562390_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665169-S	ILMN_263711	RGD1562390_PREDICTED	XR_009042.1	XR_009042.1		307797	109508799	XR_009042.1	RGD1562390_predicted		ILMN_1366458	0003990400	S	4483	CCAGCCACAGACCAAAGAGGCGGCGGCCCCAACCCTTGATCCTCTCTTCT				19q12	PREDICTED: Rattus norvegicus similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein (predicted) (RGD1562390_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646617	ILMN_50264	LOC502709	XM_578209.1	XM_578209.1		502709	62646617	XM_578209.1	LOC502709	XP_578209.1	ILMN_1649955	0006100133	S	599	AGCTGAAGGACCGACCCCCATTGGAAGAGCAAGTTGGCTGCCCTGGAACA					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG19581 (LOC502709), mRNA.					
Rattus norvegicus	RefSeq	GI_62652354-S	ILMN_65069	ZFPM2_PREDICTED	XM_235253.4	XM_235253.4		314930	109480723	XM_235253.4	Zfpm2_predicted	XP_235253.4	ILMN_1355322	0001690546	S	4448	AGTTCGCCTTAAGGTTTCGATTCTCGGCTAATCAGGCCCCAGTTGCACTT	7	+	76653915-76653964	7q22-q31	PREDICTED: Rattus norvegicus zinc finger protein, multitype 2 (predicted) (Zfpm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667160	ILMN_69636	LOC302768	XM_229071.2	XM_229071.2		302768	62667160	XM_229071.2	LOC302768	XP_229071.1	ILMN_1649909	0001050278	S	49	CCCGCCCTCCCGAGCACAGCTACAAGCTCTTGATCCCTTGGTTCTTTGCT				Xq32	PREDICTED: Rattus norvegicus similar to poly A binding protein, cytoplasmic 5 (LOC302768), mRNA.					
Rattus norvegicus	RefSeq	GI_40018581-S	ILMN_298639	GYLTL1B	NM_199107.1	NM_199107.1		311202	40018581	NM_199107.1	Gyltl1b	NP_954538.1	ILMN_1351829	0005670497	S	2181	ACATACACTGGAGAAACTGGGGACCCTGGTGGGTGCCTACCCTTATTGCT	3	-	76762675-76762724	3q24	Rattus norvegicus glycosyltransferase-like 1B (Gyltl1b), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	MGC72631	MGC72631
Rattus norvegicus	RefSeq	GI_62646872-S	ILMN_278450	LOC500035	XM_575391.1	XM_575391.1		500035	62646872	XM_575391.1	LOC500035	XP_575391.2	ILMN_1367479	0005130082	S	380	TTTCAGCGGAGACCTGGGAGTGGAGGAAAGAATGGGGGACAGGAGGCACA	4	+	39159383-39159432	4q21	PREDICTED: Rattus norvegicus hypothetical protein LOC500035 (LOC500035), mRNA.					
Rattus norvegicus	RefSeq	GI_13592068-S	ILMN_263951	RPS10	NM_031109.1	NM_031109.1		81773	13592068	NM_031109.1	Rps10	NP_112371.1	ILMN_1358581	0002640270	S	483	TCGGCAACGGAGTTCCAGTTTAGAGGGGGTTTCGGTCGTGGACGTGGTCA	20	-	5849353-5849358:5849359-5849400:5850036-5850037	20p12	Rattus norvegicus ribosomal protein S10 (Rps10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664468-S	ILMN_53007	LOC502168	XM_577625.1	XM_577625.1		502168	62664468	XM_577625.1	LOC502168	XP_577625.1	ILMN_1371447	0003450053	S	564	CTGAGCACCACAGCTCATTTGCTCCACGTTTGTGCGTGCAGCCTGTTGGC					PREDICTED: Rattus norvegicus similar to Mitochondrial import inner membrane translocase subunit Tim23 (LOC502168), mRNA.					
Rattus norvegicus	RefSeq	GI_62653466	ILMN_294213	FLI1	NM_001017381.1	NM_001017381.1		315532	62821828	NM_001017381.1	Fli1	NP_001017381.1	ILMN_1651013	0000670471	S	1584	CCCGCCATCCTAACACCCACGTGCCTTCACACTTAGGCAGCTACTACTAG	8	-	32188179-32188189:32188190-32188228	8q21	Rattus norvegicus Friend leukemia virus integration 1 (Fli1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The flow of blood through the body of an animal, enabling the transport of O2 and nutrients to the tissues and the removal of waste products [goid 8015] [evidence IEA]; The flow of blood through the body of an animal, enabling the transport of O2 and nutrients to the tissues and the removal of waste products [goid 8015] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865771-A	ILMN_263121	CORO2A	NM_001012101.1	NM_001012101.1		313235	58865771	NM_001012101.1	Coro2a	NP_001012101.1	ILMN_1376577	0002340195	S	1902	TGTGGAGAGGTCCAGAACCAAACCGCAGGTCCCCGAGAACAACCACTATT	5	-	63121949-63121998	5q22	Rattus norvegicus coronin, actin binding protein 2A (Coro2a), mRNA.		The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6542] [evidence IEA]; The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]	Catalysis of the reaction: ATP + L-glutamate + NH3 = ADP + phosphate + L-glutamine [goid 4356] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655578-S	ILMN_285108	MYH11	XM_001053471.1	XM_001053471.1		24582	109489756	XM_001053471.1	Myh11	XP_001053471.1	ILMN_1368883	0004810692	S	2777	AAGGCAGAGTCTGAGCTGAAGGAGCTGGAGCAAAGACACACTCAGCTGGC				10q11	PREDICTED: Rattus norvegicus myosin, heavy polypeptide 11, smooth muscle, transcript variant 3 (Myh11), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; A filament of myosin found in a muscle cell of any type [goid 5859] [evidence ISS]; Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The contractile fiber of smooth muscle cells [goid 30485] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]	A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence NAS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle fiber over time, from its formation to the mature structure [goid 48739] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence NAS]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21326448-S	ILMN_264478	HSD3B7	NM_139329.1	NM_139329.1		246211	21326448	NM_139329.1	Hsd3b7	NP_647545.1	ILMN_1362479	0002120746	S	1740	TCCTCCCTGAGGATGCCAACCTGTATCTGGCCACACCTGGATTAAAATCC	1	+	187089023-187089072	1q36	Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 (Hsd3b7), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NAD+ + 7-alpha-hydroxycholesterol = NADH + H+ + 7-alpha-hydroxycholest-4-en-3-one [goid 47016] [evidence IDA]	Cca2	Cca2
Rattus norvegicus	RefSeq	GI_62650105-S	ILMN_63545	RGD1565680_PREDICTED	XM_578505.2	XM_578505.2		502995	109475787	XM_578505.2	RGD1565680_predicted	XP_578505.2	ILMN_1349587	0004120184	S	1397	AGCCCAAGAAGGTCGCCATTGCTACAGCTCAATGCTCTAACTGTGAAGGC	5	+	162384264-162384313	5q36	PREDICTED: Rattus norvegicus similar to Hypothetical protein DJ1198H6.2 (predicted) (RGD1565680_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662917-S	ILMN_54754	LOC502096	XM_577536.1	XM_577536.1		502096	62662917	XM_577536.1	LOC502096	XP_577536.1	ILMN_1362630	0001170270	S	746	CTCACACCAGTCTCTCACACCAGTCTCTCACACCAGGCCCTCACACCAGT					PREDICTED: Rattus norvegicus similar to mucin 10 (LOC502096), mRNA.					
Rattus norvegicus	RefSeq	GI_62638285-S	ILMN_64508	RAET1C_PREDICTED	XM_218054.4	XM_218054.4		292458	109457517	XM_218054.4	Raet1c_predicted	XP_218054.4	ILMN_1363336	0001050114	S	1991	GAGTCAGAATAACTCTGCAGTCAGAGGAGGATGAACCAGGAATGTCCTCG	1	-	1928840-1928889	1p13	PREDICTED: Rattus norvegicus retinoic acid early transcript gamma (predicted) (Raet1c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639157-S	ILMN_63621	RPS19	XM_574391.1	XM_574391.1		29287	62639157	XM_574391.1	Rps19	XP_574391.1	ILMN_1370264	0002570121	S	144	TCCGGCCCTCCCATTTCAGGGGAAGACGAAGCCATATTCGCCCTCAGAGA				1q21	PREDICTED: Rattus norvegicus ribosomal protein S19 (Rps19), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of substances that are gaseous in normal living conditions into, out of, within or between cells [goid 15669] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence ISS]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IDA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_40254789-S	ILMN_265649	SDC1	NM_013026.2	NM_013026.2		25216	40254789	NM_013026.2	Sdc1	NP_037158.1	ILMN_1362746	0000610433	S	2705	CCTGGGACAGCCTTCATCCCTCATGGTTGCTGGGACACTTCTGAGGACTC	6	+	32275509-32275558	6q14	Rattus norvegicus syndecan 1 (Sdc1), mRNA.	A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence IMP]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence NAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate [goid 60009] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Interacting selectively with a component of the extracellular matrix [goid 50840] [evidence TAS]	HSPG; SYNDECA; Syndecan; Synd1	HSPG; SYNDECA; Syndecan; Synd1
Rattus norvegicus	RefSeq	GI_6981407-S	ILMN_293230	PRM2	NM_012873.1	NM_012873.1		25345	6981407	NM_012873.1	Prm2	NP_037005.1	ILMN_2040463	0005550386	S	162	CAAGAGGCTTCACAGGATCCACAAGAGGCGCCGGTCATGCAGAAGGCGGA	10	+	4813853-4813902	10q11	Rattus norvegicus protamine 2 (Prm2), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nucleus [goid 6997] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nucleus [goid 6997] [evidence ISS]; The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	PROTA2	PROTA2
Rattus norvegicus	RefSeq	GI_31342216-S	ILMN_262520	CACNA2D3	NM_175595.2	NM_175595.2		306243	31342216	NM_175595.2	Cacna2d3	NP_783185.1	ILMN_1374842	0007000025	S	3160	CCTGAGGAGAATGCGAGAGAGTGTGGGGGTGCATCAAGTCTCCAGGCCCA	16	-	4173478-4173522:4176176-4176180	16p16	Rattus norvegicus calcium channel, voltage-dependent, alpha2/delta subunit 3 (Cacna2d3), mRNA.	A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA];  [goid 5246] [evidence TAS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928737-S	ILMN_272405	NPPB	NM_031545.1	NM_031545.1		25105	13928737	NM_031545.1	Nppb	NP_113733.1	ILMN_2039308	0001500768	S	376	ATCGGCGCAGTCAGTCGCTTGGGCTGTGACGGGCTGAGGTTGTTTTAGGA	5	+	165062945-165062975:165063429-165063445:165063446-165063447	5q36	Rattus norvegicus natriuretic peptide precursor B (Nppb), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IDA]	BNP; Bnf	BNP; Bnf
Rattus norvegicus	RefSeq	GI_62651022	ILMN_282654	RGD1562149_PREDICTED	XR_007371.1	XR_007371.1		500690	109479606	XR_007371.1	RGD1562149_predicted		ILMN_1650949	0005270494	S	3471	GGTCTTAGTGAAAAAGGGTCAGGGTGGGCAAGGGAGAAGTCGGAGGAGGC				6q24	PREDICTED: Rattus norvegicus similar to mixed-lineage protein kinase 1 (predicted) (RGD1562149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647390-S	ILMN_64713	LOC500164	XM_575516.1	XM_575516.1		500164	62647390	XM_575516.1	LOC500164	XP_575516.1	ILMN_1370348	0004210026	S	671	CCTGGAGCCACTGGGGATATCATGATGACTCAGTCTCCCCTCTCTGTAGC				4q31	PREDICTED: Rattus norvegicus similar to Ig kappa chain (LOC500164), mRNA.					
Rattus norvegicus	RefSeq	GI_62656867-S	ILMN_51174	LOC303471	XM_220874.2	XM_220874.2		303471	62656867	XM_220874.2	LOC303471	XP_220874.1	ILMN_1367207	0005420427	S	735	CACTTGGGCACACTCGGTGTGCTGGGTTAAGGGCTAGAGCTGTATTGGCT				10q31	PREDICTED: Rattus norvegicus similar to Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein 18) (Op18) (Leukemia-associated phosphoprotein p18) (pp17) (Prosolin) (Metablastin) (Pr22 protein) (LOC303471), mRNA.					
Rattus norvegicus	RefSeq	GI_62662885-S	ILMN_263244	DEFB52	NM_001037524.1	NM_001037524.1		498660	82830433	NM_001037524.1	Defb52	NP_001032613.1	ILMN_1359549	0007000315	S	240	GTGTCTGCCTGAGGAGGAGAACAAACTGTACTCGTATGCCGGGGTTGTGC	16	+	75380992-75381041	16q12.5	Rattus norvegicus defensin beta 52 (Defb52), mRNA.					
Rattus norvegicus	RefSeq	GI_62659099-S	ILMN_66438	LOC498199	XM_573417.1	XM_573417.1		498199	62659099	XM_573417.1	LOC498199	XP_573417.1	ILMN_1350295	0001170338	S	243	GGAGGAGATGGTCCTGTCAAACTCAGTTCTCCACTTGAGAATTTCCGAGC					PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC498199), mRNA.					
Rattus norvegicus	RefSeq	GI_62654592-S	ILMN_65607	LOC497836	XM_579720.1	XM_579720.1		497836	62654592	XM_579720.1	LOC497836	XP_579720.1	ILMN_1374665	0003450541	S	1906	GTCTTGAAGTGGTGTGGACCCAGTGGACCCTAATTCTCTATGAACTTAAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_181475 (LOC497836), mRNA.					
Rattus norvegicus	RefSeq	GI_14010888-S	ILMN_281758	RPS6KB1	NM_031985.1	NM_031985.1		83840	14010888	NM_031985.1	Rps6kb1	NP_114191.1	ILMN_1356036	0002900100	S	1854	CTACCCTAGCAACATCTCAGCGTTCGTAAGGATTCTCATGCTGATGGCCG	10	-	76657403-76657452	10q26	Rattus norvegicus ribosomal protein S6 kinase, 70kDa, polypeptide 1 (Rps6kb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A process, occurring in skeletal muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse [goid 14732] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus. This process occurs as part of the regulation of muscle adaptation [goid 14878] [evidence IEP]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence IMP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus [goid 33762] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus [goid 43201] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates, maintains or increases the rate of skeletal muscle growth [goid 48633] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of ribosomal protein S6 [goid 4711] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638892-S	ILMN_294652	LOC499076	XM_001071078.1	XM_001071078.1		499076	109461176	XM_001071078.1	LOC499076	XP_001071078.1	ILMN_1359668	0003870441	S	2572	AGATAAGTATCCAGAAGCAGAGTGGTTGCCCCAGGGTCCCACCTCACGTG				1q12	PREDICTED: Rattus norvegicus similar to protein phosphatase 1, regulatory subunit 12C (LOC499076), mRNA.					
Rattus norvegicus	RefSeq	GI_62644074-S	ILMN_57923	LOC499679	XM_575004.1	XM_575004.1		499679	62644074	XM_575004.1	LOC499679	XP_575004.1	ILMN_1356545	0002450184	S	1444	GGGGTTGGCGCCTTCCAGGCCAAGACGGTAACATCTCTCTCTGTGACTTG					PREDICTED: Rattus norvegicus similar to mitochondrial tryptophanyl tRNA synthetase 2 (LOC499679), mRNA.					
Rattus norvegicus	RefSeq	GI_34861954-S	ILMN_69672	LOC365423	XM_345004.1	XM_345004.1		365423	34861954	XM_345004.1	LOC365423	XP_345005.1	ILMN_1364702	0004670167	S	97	ATCTCTGTGCTGCTGGAGGTGGGAGTGTGGAACGGTGCTGTGTGAAGGTC					PREDICTED: Rattus norvegicus similar to Fragile X mental retardation syndrome related protein 2 (LOC365423), mRNA.					
Rattus norvegicus	RefSeq	GI_62654929-S	ILMN_287485	LOC501126	XM_001055017.1	XM_001055017.1		501126	109485954	XM_001055017.1	LOC501126	XP_001055017.1	ILMN_1350957	0003360075	S	3855	CTAACTTTAAGCAAGCCACTGTCCCCCAGGGATGCTCAGACCCCAGCCTC	9	+	36125861-36125910	9q21	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC26733 (LOC501126), mRNA.					
Rattus norvegicus	RefSeq	GI_62662549-S	ILMN_283517	RGD1565534_PREDICTED	XR_008898.1	XR_008898.1		502072	109504065	XR_008898.1	RGD1565534_predicted		ILMN_1358484	0003390358	S	1004	GACATTTCTGGGAGGTGCAGGGAGGAAAGAAGCTGGAGTGGGCAGTTGGC				16p13	PREDICTED: Rattus norvegicus similar to RING finger protein 33 (predicted) (RGD1565534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666668-S	ILMN_66173	LOC501534	XM_576934.1	XM_576934.1		501534	62666668	XM_576934.1	LOC501534	XP_576934.1	ILMN_1360820	0006940181	S	149	GCCTAAGACCAAAAACTCAGGTGATAGCAGATGCTGGCAAGGATGTGGGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501534), mRNA.					
Rattus norvegicus	RefSeq	GI_49169969-S	ILMN_282042	TMEM35	NM_001001799.1	NM_001001799.1		308134	49169969	NM_001001799.1	Tmem35	NP_001001799.1	ILMN_1363265	0006590156	S	1658	CACCTCTTCAGCATTCCAGAGGGTGGAGTTTAGCTGGGGGAGGACATTTG	X	+	121784192-121784241	Xq34	Rattus norvegicus transmembrane protein 35 (Tmem35), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RSEP4	RSEP4
Rattus norvegicus	RefSeq	GI_62666585-S	ILMN_263064	RGD1564947_PREDICTED	XM_001063037.1	XM_001063037.1		317368	109511568	XM_001063037.1	RGD1564947_predicted	XP_001063037.1	ILMN_1366902	0000450044	S	1700	CATGCCTGTCAATCCTCACCCCATCACGAGGCAGGAAGGGGGTGGTCCTT				Xq13	PREDICTED: Rattus norvegicus similar to porcupine-D (predicted) (RGD1564947_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651098-S	ILMN_293715	LOC688673	XM_001067842.1	XM_001067842.1		688673	109478545	XM_001067842.1	LOC688673	XP_001067842.1	ILMN_1366086	0006200086	S	1183	GCCTACAGCTTCTACCTCTTTCACCCTCTGGCTTATGGGATGGTTGGTCC	6	-	111242511-111242553:111243252-111243258	6q31	PREDICTED: Rattus norvegicus similar to Protein O-mannosyl-transferase 2 (Dolichyl-phosphate-mannose--protein mannosyltransferase 2) (LOC688673), mRNA.					
Rattus norvegicus	RefSeq	GI_27229295-S	ILMN_267470	HAS1	NM_172323.1	NM_172323.1		282821	27229295	NM_172323.1	Has1	NP_758826.1	ILMN_1360354	0001780176	S	1771	GGTGGCTACCGTGTCCAAGTATGAGTCTGGGTATGAAGATGCCCCTGAGG	1	-	56503640-56503666:56503667-56503689	1q12	Rattus norvegicus hyaluronan synthase 1 (Has1), mRNA.		The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the formation of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine [goid 30213] [evidence IMP]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: UDP-D-glucuronate + UDP-N-acetyl-D-glucosamine = [beta-N-acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)](n) + 2n UDP [goid 50501] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62648734-S	ILMN_61166	LOC500422	XM_580064.1	XM_580064.1		500422	62648734	XM_580064.1	LOC500422	XP_580064.1	ILMN_1351790	0006650092	S	1451	GGGACAAGCTAGACAGACCCTGTGTGGAGGAGTTAAAATCTCAGGAACAG					PREDICTED: Rattus norvegicus LOC500422 (LOC500422), mRNA.					
Rattus norvegicus	RefSeq	GI_47576032-S	ILMN_288431	OLR1435	NM_001000777.1	NM_001000777.1		405053	47576032	NM_001000777.1	Olr1435	NP_001000777.1	ILMN_1361009	0003440338	S	797	CTCCTGGGAGGGACAAAGTGGTGGCTGTGCTCTACTCGATCATCACCCCT	10	-	44590787-44590836	10q22	Rattus norvegicus olfactory receptor 1435 (Olr1435), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1435	Olr1435
Rattus norvegicus	RefSeq	GI_62653143-I	ILMN_59722	NFE2_PREDICTED	XM_576348.1	XM_576348.1		366998	62653143	XM_576348.1	Nfe2_predicted	XP_576348.1	ILMN_1375652	0001340242	S	1515	CCCAACTGCATGGCAGTGAGAAGTAGTAGAGTGGCCCAGAATAAAGGCTC				7q36	PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2 (predicted) (Nfe2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639855-S	ILMN_67559	UBE3A_PREDICTED	XM_341867.2	XM_341867.2		361585	62639855	XM_341867.2	Ube3a_predicted	XP_341868.2	ILMN_1371010	0002450022	S	3077	GTCTGTGCCTCCCTTCTTCATTGGGGACATTGTGGGCTGGAACAGCAGAT				1q22	PREDICTED: Rattus norvegicus ubiquitin protein ligase E3A (predicted) (Ube3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642421-S	ILMN_282106	LOC688785	XM_001070868.1	XM_001070868.1		688785	109460183	XM_001070868.1	LOC688785	XP_001070868.1	ILMN_1374269	0006450433	S	3208	CTTCTACTCAACACCTTCCCAGCCGGATGGAGTTCAAGTCTCAAGCAGCC	1	+	251739565-251739614	1q54	PREDICTED: Rattus norvegicus similar to Tripartite motif protein 8 (RING finger protein 27) (Glioblastoma-expressed RING finger protein) (LOC688785), mRNA.					
Rattus norvegicus	RefSeq	GI_62643113-S	ILMN_266247	FAM105A	NM_001037648.1	NM_001037648.1		310190	83320081	NM_001037648.1	Fam105a	NP_001032737.1	ILMN_1368357	0000780279	S	736	AGAGGGAGCATGTGTAACAGCCTCTTCTCCGACGCCATCCTGGAGTGTAA	2	-	79545629-79545678	2q22	Rattus norvegicus family with sequence similarity 105, member A (Fam105a), mRNA.				MGC124675	MGC124675
Rattus norvegicus	RefSeq	GI_27229299-S	ILMN_280131	ZFP161	NM_172325.1	NM_172325.1		282825	27229299	NM_172325.1	Zfp161	NP_758828.1	ILMN_1357602	0002120487	S	1009	GTGTGCGGGAAGTCGTTTATCCGCGCCCCAGACTTGAAGAAGCACGAGAG	9	+	108513818-108513867	9q38	Rattus norvegicus zinc finger protein 161 (Zfp161), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zf5	Zf5
Rattus norvegicus	RefSeq	GI_62641686-S	ILMN_270452	SUV420H1_PREDICTED	XM_001068585.1	XM_001068585.1		361688	109463293	XM_001068585.1	Suv420h1_predicted	XP_001068585.1	ILMN_1365857	0004760333	S	3552	GAACAGCGTGGCGACAGCGAGCAGCGTTTGTCTGATGAACTCCAGCTATC				1q42	PREDICTED: Rattus norvegicus suppressor of variegation 4-20 homolog 1 (Drosophila) (predicted) (Suv420h1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639019-S	ILMN_295089	LOC691411	XM_001078129.1	XM_001078129.1		691411	109458111	XM_001078129.1	LOC691411	XP_001078129.1	ILMN_1362170	0002320138	S	1011	CCTCACCCCCGGAAGCGGAACCCTGTAAGCTCCATCAAGAGCTATCTAGG	1	+	67619355-67619404	1q12	PREDICTED: Rattus norvegicus similar to protein kinase Bsk146 (LOC691411), mRNA.					
Rattus norvegicus	RefSeq	GI_62651872-S	ILMN_63830	BTBD11_PREDICTED	XM_234988.4	XM_234988.4		314675	109480389	XM_234988.4	Btbd11_predicted	XP_234988.4	ILMN_1363204	0003440128	S	3064	ATGGTCCCTACCCCATTCCCAAGCTCACAGAGATCAAGAGGAAGCAGACG	7	-	20193326-20193375	7q13	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 11 (predicted) (Btbd11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639058-I	ILMN_58096	UBLE1A_PREDICTED	XM_574373.1	XM_574373.1		308384	62639058	XM_574373.1	Uble1a_predicted	XP_574373.1	ILMN_1375693	0003190672	S	9	TCAGCAACTGCTGGAACAACCAGCAACGCTCGAGGGCCTTGGAGAGCTAG				1q21	PREDICTED: Rattus norvegicus ubiquitin-like 1 (sentrin) activating enzyme E1A (predicted) (Uble1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717850-S	ILMN_52014	LOC363345	XM_343682.2	XM_343682.2		363345	62717850	XM_343682.2	LOC363345	XP_343683.2	ILMN_1357161	0006900368	S	808	AGGAGTCCCCTGCTGACAAACATCCTGACTGAAAACAGCACTTGAGAGAC					PREDICTED: Rattus norvegicus hypothetical LOC363345 (LOC363345), mRNA.					
Rattus norvegicus	RefSeq	GI_62664155-S	ILMN_67530	RGD1305072	XM_214589.4	XM_214589.4		291709	109506403	XM_214589.4	RGD1305072	XP_214589.2	ILMN_1363239	0002510070	S	2438	GGCAGCCATTACCGTTTCCACACGTATCTAAGGAGCCTAGCTTGTCCTTC	18	-	23990291-23990340	18p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200007B05 gene (RGD1305072), mRNA.					
Rattus norvegicus	RefSeq	GI_62664390-S	ILMN_301525	RGD1559621_PREDICTED	XR_007411.1	XR_007411.1		317168	109507293	XR_007411.1	RGD1559621_predicted		ILMN_1368667	0006040408	S	1016	AGAGTATGGCTACAGCAACAGGATGATGGACCTCATGGCCTGCAACGAGT				18q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1559621_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646118-A	ILMN_292955	RALY	NM_001011958.1	NM_001011958.1		296301	58865493	NM_001011958.1	Raly	NP_001011958.1	ILMN_1376829	0004280070	S	762	CCAATCCAGATGGCAAGAAGAAGGGTGACAGCAGCAGTGGTGGAGGAGGG	3	+	145337390-145337398:145337560-145337600	3q41	Rattus norvegicus RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) (Raly), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646407-S	ILMN_281027	LOC686361	XM_001073737.1	XM_001073737.1		686361	109471381	XM_001073737.1	LOC686361	XP_001073737.1	ILMN_1355047	0007100452	S	647	ACTACACCAATGCCTTAAATGACAGTGACTCCAAGCTCCAGCAGGCGGCG					PREDICTED: Rattus norvegicus hypothetical protein LOC686361 (LOC686361), mRNA.					
Rattus norvegicus	RefSeq	GI_62659633-S	ILMN_60270	RGD1563422_PREDICTED	XM_213922.4	XM_213922.4		289182	109498129	XM_213922.4	RGD1563422_predicted	XP_213922.1	ILMN_1365423	0001240465	S	649	GTGTGGGATGGTCGAGTGGCTGCAAATGGAAGGACAGAATGTCCAAGGGC	13	+	81204002-81204051	13q23	PREDICTED: Rattus norvegicus similar to Brain protein 44 (predicted) (RGD1563422_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638235-S	ILMN_62035	DEADC1_PREDICTED	XM_341731.2	XM_341731.2		361453	62638235	XM_341731.2	Deadc1_predicted	XP_341732.2	ILMN_1349840	0002100731	S	435	ATCCCGCTGGTCGTCTATGGCTGTCAGAATGAACGGTTTGGTGGTTGTGG				1p13	PREDICTED: Rattus norvegicus deaminase domain containing 1 (predicted) (Deadc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16924003-S	ILMN_273496	CSRP3	NM_057144.1	NM_057144.1		117505	16924003	NM_057144.1	Csrp3	NP_476485.1	ILMN_1367043	0002100368	S	657	ACAGCAGGGCTTAGTGACCCCATAGATGTAACTTTGGCCCCGCAGCCTCC	1	-	98601819-98601868	1q22	Rattus norvegicus cysteine and glycine-rich protein 3 (Csrp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEP]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MLP	MLP
Rattus norvegicus	RefSeq	GI_62652358-S	ILMN_276358	RGD1562427_PREDICTED	XR_007963.1	XR_007963.1		314927	109482141	XR_007963.1	RGD1562427_predicted		ILMN_1358297	0002470139	S	236	AGCCATCTGGGCCAAAGGAATAAGGAATGTCCCATACCGCATCCGAGTAC				7q31	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1562427_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653277-S	ILMN_67762	LOC500950	XM_576361.1	XM_576361.1		500950	62653277	XM_576361.1	LOC500950	XP_576361.1	ILMN_1351340	0000540040	S	1539	GCCTTCAGTGACCATTCATCCCTTAGGAGTCATGTGAAAACCCACCGGGG				8q13	PREDICTED: Rattus norvegicus similar to zinc finger protein 75 (LOC500950), mRNA.					
Rattus norvegicus	RefSeq	GI_62651455-S	ILMN_266776	RGD1307899_PREDICTED	XM_001067141.1	XM_001067141.1		314406	109479894	XM_001067141.1	RGD1307899_predicted	XP_001067141.1	ILMN_1353422	0002450008	S	993	GGCAGATGCAAAAGGTGGAACAGAGACTGACCTACCCACACTTCCGCCGA				6q32	PREDICTED: Rattus norvegicus similar to Alpha-1-antitrypsin-related protein precursor (predicted) (RGD1307899_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978488-S	ILMN_278036	ALDOC	NM_012497.1	NM_012497.1		24191	6978488	NM_012497.1	Aldoc	NP_036629.1	ILMN_1349452	0003120152	S	1340	ATTGCTGCACTGGAGACCACAGGATGGGAGGGTAGAGAGGCCCGTCCATG	10	-	64309017-64309066	10q25	Rattus norvegicus aldolase C, fructose-bisphosphate (Aldoc), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IDA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	ALDCAA; F16dip7; RATALDCAA	ALDCAA; F16dip7; RATALDCAA
Rattus norvegicus	RefSeq	GI_62644903-S	ILMN_54891	LOC311852	XM_231131.3	XM_231131.3		311852	62644903	XM_231131.3	LOC311852	XP_231131.3	ILMN_1372868	0005890121	S	1346	AGGCCTAAGAACCTTCCTGGACACCCCTAACAATCCGGAGCAGGTGGGCA				3p12	PREDICTED: Rattus norvegicus similar to 1700113K14Rik protein (predicted) (LOC311852), mRNA.					
Rattus norvegicus	RefSeq	GI_62652420-S	ILMN_68380	THRAP6_PREDICTED	XM_216917.4	XM_216917.4		299905	109480764	XM_216917.4	Thrap6_predicted	XP_216917.3	ILMN_1372085	0001400010	S	478	CCGGGCTGGTCCACCTCGTTTTGCTAGTGAAGAGAGACGAGAAATTGCAG	7	+	89008156-89008205	7q31	PREDICTED: Rattus norvegicus thyroid hormone receptor associated protein 6 (predicted) (Thrap6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641246-S	ILMN_271514	RBBP6	XM_001076339.1	XM_001076339.1		308968	109462811	XM_001076339.1	Rbbp6	XP_001076339.1	ILMN_1372652	0000050400	S	5470	GCCAAAGTAGCCCCAGTGTTAGTCCAAGTAGAAGTCATAGCCCTTCCGGC				1q36	PREDICTED: Rattus norvegicus retinoblastoma binding protein 6, transcript variant 1 (Rbbp6), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650097-S	ILMN_297477	CTRC	XM_001076330.1	XM_001076330.1		362653	109475771	XM_001076330.1	Ctrc	XP_001076330.1	ILMN_1355287	0002690301	S	641	CACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGAAGACGATGG	5	-	160745496-160745545	5q36	PREDICTED: Rattus norvegicus chymotrypsin C (caldecrin) (Ctrc), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648768-S	ILMN_267075	RRAGD_PREDICTED	XM_001063809.1	XM_001063809.1		297960	109476290	XM_001063809.1	Rragd_predicted	XP_001063809.1	ILMN_1370703	0001050746	S	1261	GTCTTCGAGGTGAGGATGAAGATGGTGAAATCTCGGAAGGCCCAGAGTCG				5q21	PREDICTED: Rattus norvegicus Ras-related GTP binding D (predicted) (Rragd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649405-S	ILMN_287779	TXNDC12	XM_001067457.1	XM_001067457.1		298370	109476986	XM_001067457.1	Txndc12	XP_001067457.1	ILMN_1366409	0004230750	S	1223	ATCCCTGTTTGCACGGATGTGCGTCAAGAATGGCTGTGTGCTGAGGCTCA				5q35	PREDICTED: Rattus norvegicus thioredoxin domain containing 12 (endoplasmic reticulum) (Txndc12), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 2 glutathione + protein-disulfide = oxidized glutathione + protein-dithiol [goid 19153] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653715-S	ILMN_262527	LRRN6A	XM_001070615.1	XM_001070615.1		315691	109484730	XM_001070615.1	Lrrn6a	XP_001070615.1	ILMN_1358504	0002370162	S	3515	TCGAGCAGGTCGCTGGCCCTCTTGGGCCTCAGTCTCCACATCTGTACAAA				8q24	PREDICTED: Rattus norvegicus leucine rich repeat neuronal 6A, transcript variant 2 (Lrrn6a), mRNA.					
Rattus norvegicus	RefSeq	GI_47576206-S	ILMN_273612	OLR1339	NM_001000481.1	NM_001000481.1		300639	47576206	NM_001000481.1	Olr1339	NP_001000481.1	ILMN_1363925	0005270528	S	600	GTCTAACAATGGCTTGGTCACTCTCATGTGCTTTCTGGTGCTGCTGGGCC	8	-	43020585-43020634	8q22	Rattus norvegicus olfactory receptor 1339 (Olr1339), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-43030000-43029056_ORF; Olr1339	ratchr8-43030000-43029056_ORF; Olr1339
Rattus norvegicus	RefSeq	GI_21728411-S	ILMN_271287	TNFSF10	NM_145681.1	NM_145681.1		246775	21728411	NM_145681.1	Tnfsf10	NP_663714.1	ILMN_1362036	0005130397	S	683	GCTACCCCGATCCCATACTGCTGATGAAGAGTGCCAGAAATAGCTGCTGG	2	+	113221368-113221417	2q24	Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 10 (Tnfsf10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence NAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Trail	Trail
Rattus norvegicus	RefSeq	GI_62647677	ILMN_262490	LOC684490	XM_001067912.1	XM_001067912.1		684490	109473728	XM_001067912.1	LOC684490	XP_001067912.1	ILMN_1651054	0001690161	S	1068	TGCTCAGGCCAGAGGAGCTGGAAGTGTTGAAGTCCACACAGCGCGGAGTT					PREDICTED: Rattus norvegicus similar to Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial precursor, transcript variant 2 (LOC684490), mRNA.					
Rattus norvegicus	RefSeq	GI_57114301-S	ILMN_292005	SLPIL3	NM_001008873.1	NM_001008873.1		408224	57114301	NM_001008873.1	Slpil3	NP_001008873.1	ILMN_1371077	0002900592	S	42	TCTGGGGATCCTGGCACCATGGAGGGTGGAAGGGAACAACAATGATGCTG	3	-	155349088-155349094:155349661-155349703	3q42	Rattus norvegicus antileukoproteinase-like 3 (Slpil3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648204-S	ILMN_270940	FKBP4	XM_001066628.1	XM_001066628.1		260321	109474285	XM_001066628.1	Fkbp4	XP_001066628.1	ILMN_1358928	0006220064	S	3008	CAGCACTCTGGAATTGGGGTCGGGTGGATCTCTGGTCAAGGCCAGCTTGA				4q42	PREDICTED: Rattus norvegicus FK506 binding protein 4 (Fkbp4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a steroid hormone receptor complex, an intracellular receptor that binds steroid hormones. The complex is often a dimer, and forms after the steroid has bound the receptor [goid 6463] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a steroid hormone receptor complex, an intracellular receptor that binds steroid hormones. The complex is often a dimer, and forms after the steroid has bound the receptor [goid 6463] [evidence ISS]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence IMP]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Any process by which a protein complex is transported to, or maintained in, a specific location [goid 31503] [evidence IEA]; Any process by which a protein complex is transported to, or maintained in, a specific location [goid 31503] [evidence ISS]; The establishment of the sex of a male organism by physical differentiation [goid 46661] [evidence IEA]; The establishment of the sex of a male organism by physical differentiation [goid 46661] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a steroid hormone receptor complex, an intracellular receptor that binds steroid hormones. The complex is often a dimer, and forms after the steroid has bound the receptor [goid 6463] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEA]; Any process by which a protein complex is transported to, or maintained in, a specific location [goid 31503] [evidence IEA]; The establishment of the sex of a male organism by physical differentiation [goid 46661] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence TAS]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence ISS]; Interacting selectively with a glucocorticoid receptor [goid 35259] [evidence IEA]; Interacting selectively with a glucocorticoid receptor [goid 35259] [evidence ISS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with a glucocorticoid receptor [goid 35259] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651382-S	ILMN_60899	LOC299440	XM_234686.3	XM_234686.3		299440	62651382	XM_234686.3	LOC299440	XP_234686.3	ILMN_1356531	0006040102	S	2831	CCGTCAGATCCTAGGGAAGAGGTTAGAGTGGATGGGGCGCATATGTTACG				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC299440), mRNA.					
Rattus norvegicus	RefSeq	GI_8392887-S	ILMN_287311	AKT2	NM_017093.1	NM_017093.1		25233	8392887	NM_017093.1	Akt2	NP_058789.1	ILMN_1372084	0005690451	S	1716	ATCCGAGAGTGAGCAGCCCTCTGCCACCACAGGACACAGCATGGGCGCCA	1	+	82726276-82726287:82726288-82726325	1q21	Rattus norvegicus v-akt murine thymoma viral oncogene homolog 2 (Akt2), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645854-S	ILMN_270927	STK35_PREDICTED	XM_001081143.1	XM_001081143.1		311419	109470814	XM_001081143.1	Stk35_predicted	XP_001081143.1	ILMN_1355224	0006020086	S	2808	CCAGGGCTGACGTCTTGGGTGTTGTTAAACTAGGTCGATCCTTCGGGACC				3q36	PREDICTED: Rattus norvegicus serine/threonine kinase 35 (predicted) (Stk35_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644011-S	ILMN_54429	LOC365856	XM_578062.1	XM_578062.1		365856	62644011	XM_578062.1	LOC365856	XP_578062.1	ILMN_1365145	0004060538	S	1659	GGGGTTTGTCCCCGCTGTAAGAGAGGCCTTCACTGGGTCAGGGAATGTCG				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (LOC365856), mRNA.					
Rattus norvegicus	RefSeq	GI_62653009-S	ILMN_52297	LOC500925	XM_576334.1	XM_576334.1		500925	62653009	XM_576334.1	LOC500925	XP_576334.1	ILMN_1355702	0000380132	S	2039	CTCAGGGCCAGGGCTTGTGGCTCTAGCATTAGGTTCAGGGGGCTTCAGAC				7q36	PREDICTED: Rattus norvegicus similar to expressed sequence AI836003 (LOC500925), mRNA.					
Rattus norvegicus	RefSeq	GI_6981219-S	ILMN_273250	MPG	NM_012601.1	NM_012601.1		24561	6981219	NM_012601.1	Mpg	NP_036733.1	ILMN_1373190	0007050136	S	639	GTTCCCTCAAGGACCGCGAGCTCTGTAATGGTCCCTCCAAACTGTGCCAG	10	-	15643632-15643681	10q12	Rattus norvegicus N-methylpurine-DNA glycosylase (Mpg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IEA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence ISS]; The disruption of the bond between the sugar in the backbone and the A or G base, causing the base to be removed and leaving a depurinated sugar [goid 45007] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of alkylated DNA; recognizes and removes alkylated purines and pyrimidines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic or apyrimidinic (AP) site. Enzyme has broad substrate specificity, being able to recognize alkylpurines, alkylpyrimidines or ethenopurines [goid 3905] [evidence IEA]; Catalysis of the hydrolysis of alkylated DNA; recognizes and removes alkylated purines and pyrimidines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic or apyrimidinic (AP) site. Enzyme has broad substrate specificity, being able to recognize alkylpurines, alkylpyrimidines or ethenopurines [goid 3905] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27675137-S	ILMN_284833	RGD1565932_PREDICTED	XM_001061870.1	XM_001061870.1		302325	109512239	XM_001061870.1	RGD1565932_predicted	XP_001061870.1	ILMN_1368427	0006980601	S	627	GTACTACTTCACTTACGACCCACGGATTGGCAAACTGCTTCACCTGGAGG				Xq32	PREDICTED: Rattus norvegicus similar to Diamine acetyltransferase 1 (Spermidine/spermine N(1) (predicted) (RGD1565932_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981265-A	ILMN_289474	NFIA	NM_012988.1	NM_012988.1		25492	6981265	NM_012988.1	Nfia	NP_037120.1	ILMN_1376576	0006400440	S	3021	AACGCCTCGTCGTAACCAGACATTGTCCAGAAGTTTCAAAGACCCTTCGC	5	+	118508054-118508091	5q33	Rattus norvegicus nuclear factor I/A (Nfia), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577736-S	ILMN_273627	OLR1261	NM_001000804.1	NM_001000804.1		405090	47577736	NM_001000804.1	Olr1261	NP_001000804.1	ILMN_1364117	0005130288	S	451	ATGGGATTTGCTGATGCTATGATCCACACTGGTTGCATGCTCAGACTTAG	8	+	40989312-40989361	8q22	Rattus norvegicus olfactory receptor 1261 (Olr1261), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1261	Olr1261
Rattus norvegicus	RefSeq	GI_62651722-S	ILMN_265539	RGD1560581_PREDICTED	XR_009063.1	XR_009063.1		299622	109481553	XR_009063.1	RGD1560581_predicted		ILMN_1352034	0002480242	S	860	CCACTCTCATTCTTCCGCCTTTGACGCTGGGGCTGGCAGTGTGCTCAGTA				7q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560581_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560027-S	ILMN_49005	XIAP	NM_022231.2	NM_022231.2		63879	76008364	NM_022231.2	Xiap	NP_071567.1	ILMN_2039654	0006270093	S	1748	GTGCGGAAGCAGTTGACAAATGTCCCATGTGCTGCACAGTCATTACGTTC	X	-	3012191-3012240	Xq11	Rattus norvegicus X-linked inhibitor of apoptosis (Xiap), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence ISS]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	riap3; Xiap; Api3	riap3; Xiap; Api3
Rattus norvegicus	RefSeq	GI_55741513-S	ILMN_281715	TSEN34	NM_001006968.1	NM_001006968.1		292534	55741513	NM_001006968.1	Tsen34	NP_001006969.1	ILMN_1365704	0000610193	S	977	CAGCCTGATGGGAAGGTGGTTTATACTTCCCTGCAGTGGGCCAGCCTGCA	1	-	63830572-63830621	1q12	Rattus norvegicus tRNA splicing endonuclease 34 homolog (S. cerevisiae) (Tsen34), mRNA.	A complex that catalyzes the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron [goid 214] [evidence IEA]	Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons [goid 6388] [evidence IEA]	Catalysis of the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron [goid 213] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	LENG5; SEN34; MGC94712	LENG5; SEN34; MGC94712
Rattus norvegicus	RefSeq	GI_62647414-S	ILMN_65764	LOC500175	XM_575527.1	XM_575527.1		500175	62647414	XM_575527.1	LOC500175	XP_575527.1	ILMN_1364202	0001500717	S	291	AGCAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGCCAACAGTATGA				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain precursor (LOC500175), mRNA.					
Rattus norvegicus	RefSeq	GI_62666635-S	ILMN_265607	RGD1561510_PREDICTED	XM_001064508.1	XM_001064508.1		367745	109511596	XM_001064508.1	RGD1561510_predicted	XP_001064508.1	ILMN_1359467	0006380170	S	3857	TGTTGAGAGACGCTAAGGATCGGGCCATGCTAGAAACTGCCTTGGATGCC				Xq13	PREDICTED: Rattus norvegicus similar to Hypothetical protein C130007D14 (predicted) (RGD1561510_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644748-S	ILMN_285360	LOC499754	XM_001077862.1	XM_001077862.1		499754	109469572	XM_001077862.1	LOC499754	XP_001077862.1	ILMN_1371826	0004280138	S	1419	GCGCACGCAAGCGCTGTCCAGAAATGAGGAGGTTGACACAAAAGTGAGGG				3p13	PREDICTED: Rattus norvegicus hypothetical protein LOC499754 (LOC499754), mRNA.					
Rattus norvegicus	RefSeq	GI_51854248-S	ILMN_280668	S100A11	NM_001004095.1	NM_001004095.1		445415	51854248	NM_001004095.1	S100a11	NP_001004095.1	ILMN_1373883	0004590324	S	2	TGCCTACAGAGACTGAGAGATGCATCGAGTCCCTGATTGCTGTTTTCCAG	2	+	186620361-186620410	2q34	Rattus norvegicus S100 calcium binding protein A11 (calizzarin) (S100a11), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]		Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660227-S	ILMN_55305	LOC501892	XM_577315.1	XM_577315.1		501892	62660227	XM_577315.1	LOC501892	XP_577315.1	ILMN_1355560	0002350577	S	2299	CGCTCTGAATGGTCTTCCTGGACGCTGAGCAAAACCTGATGTTCGACCAG				14p22	PREDICTED: Rattus norvegicus similar to CDNA sequence BC061212 (LOC501892), mRNA.					
Rattus norvegicus	RefSeq	GI_62638226-S	ILMN_270446	LOC684363	XM_001070057.1	XM_001070057.1		684363	109460449	XM_001070057.1	LOC684363	XP_001070057.1	ILMN_1353841	0003390253	S	267	ATTGACACGTTCTGGTACAAGTTCCTGCAGCGCGAGCCGGGAGGCGAGCT					PREDICTED: Rattus norvegicus similar to Laforin (Lafora PTPase) (LAFPTPase) (LOC684363), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663923-S	ILMN_277240	MRC1_PREDICTED	XM_001072782.1	XM_001072782.1		291327	109506195	XM_001072782.1	Mrc1_predicted	XP_001072782.1	ILMN_1374846	0003120577	S	4276	GTGGTCATCGTGGTCCTTCTGATTGTGATAGGTGCCGGTGTTGCGGCCTA				17q12.3	PREDICTED: Rattus norvegicus mannose receptor, C type 1 (predicted) (Mrc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079280-S	ILMN_269907	ARMCX2	NM_001014274.1	NM_001014274.1		367903	62079280	NM_001014274.1	Armcx2	NP_001014296.1	ILMN_1352521	0002350037	S	2815	CTGGGGTGTGTGTGAAGAAAATTCGAGCCTTAGCAAATCACCATGACCTC	X	-	122261333-122261382	Xq34	Rattus norvegicus armadillo repeat containing, X-linked 2 (Armcx2), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31341202-S	ILMN_268708	LHFPL4	NM_181387.2	NM_181387.2		353230	31341202	NM_181387.2	Lhfpl4	NP_852052.1	ILMN_1371076	0004730403	S	923	CTGAAAGCCCGGGTTGTAGTTCCGGAGTTGGCCTGACCTCAGCATATCCT	4	-	149049673-149049719:149049720-149049722	4q42	Rattus norvegicus lipoma HMGIC fusion partner-like protein 4 (Lhfpl4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_9910519-S	ILMN_269746	PLVAP	NM_020086.1	NM_020086.1		56765	9910519	NM_020086.1	Plvap	NP_064471.1	ILMN_1351878	0000770079	S	1868	GGCTGCCTCCCGCCTCAGTCTGCTTGTAGCCCTTAAAGACATCACTGGCA	16	-	18668597-18668646	16p14	Rattus norvegicus plasmalemma vesicle associated protein (Plvap), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence NAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]	Pv1	Pv1
Rattus norvegicus	RefSeq	GI_20806122-S	ILMN_281520	CGREF1	NM_139087.1	NM_139087.1		245918	20806122	NM_139087.1	Cgref1	NP_620787.1	ILMN_1349519	0003060129	S	1076	CAGGCTGGGCTACTTCGTGAGGCCCTGTCTTGAGGAGGGGAAAAGAAACG	6	+	25426638-25426687	6q14	Rattus norvegicus cell growth regulator with EF hand domain 1 (Cgref1), mRNA.		The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IDA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Cgr11	Cgr11
Rattus norvegicus	RefSeq	GI_62638371-S	ILMN_297171	VNN1	NM_001025623.1	NM_001025623.1		29142	71043729	NM_001025623.1	Vnn1	NP_001020794.1	ILMN_1362604	0001740438	S	2250	TGGCCGTCTACAACAAGGAAAGGGGCCTCAGGAGAAAGCAACCTGCTAAC	1	-	22087342-22087391	1p12	Rattus norvegicus vanin 1 (Vnn1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence ISS]; Inflammation of prolonged duration (weeks or months) in which active inflammation, tissue destruction, and attempts at repair are proceeding simultaneously. Although it may follow acute inflammation, chronic inflammation frequently begins insidiously, as a low-grade, smoldering, often asymptomatic response [goid 2544] [evidence ISS]; The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The chemical reactions and pathways involving pantothenate, the anion of pantothenic acid, the amide of beta-alanine and pantoic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods [goid 15939] [evidence IEA]; The chemical reactions and pathways involving pantothenate, the anion of pantothenic acid, the amide of beta-alanine and pantoic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods [goid 15939] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation in the thymus [goid 33089] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]	Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide [goid 16811] [evidence IEA]	MGC114385; Tiff66	MGC114385; Tiff66
Rattus norvegicus	RefSeq	GI_47576838-S	ILMN_271581	OLR205	NM_001001018.1	NM_001001018.1		405392	47576838	NM_001001018.1	Olr205	NP_001001018.1	ILMN_1360288	0006450600	S	561	GGCCTGTGCAGACACATCCACATATGAGCTGGTGGTTTATTTGACTAGTG	1	-	163874789-163874838	1q33	Rattus norvegicus olfactory receptor 205 (Olr205), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr205	Olr205
Rattus norvegicus	RefSeq	GI_62654909-S	ILMN_301428	RGD1309220	NM_001034835.1	NM_001034835.1		316328	77797834	NM_001034835.1	RGD1309220	NP_001030007.1	ILMN_1357357	0000380377	S	2541	AGCATCAGGCTTAAAGGTCCCCACCACCATTACTCTGACACTCCGCGGCC	9	-	35275806-35275848:35276136-35276142	9q21	Rattus norvegicus similar to RIKEN cDNA 4632411B12 (RGD1309220), mRNA.			Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57222299-S	ILMN_272279	KLRA2	NM_001009486.1	NM_001009486.1		494194	57222299	NM_001009486.1	Klra2	NP_001009486.1	ILMN_1367927	0002630373	S	1611	GTTTGTGGCAATTGTGGGCCTTAGTGTGGTATTCTGTGTCATGAAATCTG	4	-	168893151-168893200	4q42	Rattus norvegicus killer cell lectin-like receptor, subfamily A, member 2 (Klra2), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978434-S	ILMN_302554	ACADVL	NM_012891.1	NM_012891.1		25363	6978434	NM_012891.1	Acadvl	NP_037023.1	ILMN_1356482	0005420369	S	1848	GGCTGCAACACGGATTCGAGAAAACATGGCCAGCCTTCAGTCCAACCCTC	10	-	56856437-56856486	10q24	Rattus norvegicus acyl-Coenzyme A dehydrogenase, very long chain (Acadvl), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IDA]; Catalysis of the reaction: acyl-CoA + ETF = 2,3-dehydroacyl-CoA + reduced ETF [goid 4466] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	VLCAD; MGC93660	VLCAD; MGC93660
Rattus norvegicus	RefSeq	GI_24308487-S	ILMN_291029	V1RA16	NM_153729.1	NM_153729.1		266771	24308487	NM_153729.1	V1ra16	NP_714951.1	ILMN_1351192	0006130253	S	995	GCACCATATCCGCCTCCAGACTTATGCACAACGGTGAACCAATCCACCAC	4	-	123811832-123811881	4q34	Rattus norvegicus vomeronasal 1 receptor, A16 (V1ra16), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	V1ra16	V1ra16
Rattus norvegicus	RefSeq	GI_62650831-S	ILMN_275541	SNAPC1_PREDICTED	XM_001080731.1	XM_001080731.1		314228	109479527	XM_001080731.1	Snapc1_predicted	XP_001080731.1	ILMN_1352426	0004120465	S	1388	GGGAGAGCCTGTCATAGGCCAAGAGTTGGAGTAAAGGTTTACTCTGAAGC				6q24	PREDICTED: Rattus norvegicus small nuclear RNA activating complex, polypeptide 1 (predicted) (Snapc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644503-S	ILMN_56648	LOC497765	XM_579597.1	XM_579597.1		497765	62644503	XM_579597.1	LOC497765	XP_579597.1	ILMN_1363787	0004060050	S	4827	CTTATAATCACGGCGTTTGCGCGGTTCTGTATCAGTTCCAGCGGCAGCCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_057142 (LOC497765), mRNA.					
Rattus norvegicus	RefSeq	GI_34935305-S	ILMN_60808	LOC314512	XM_234676.2	XM_234676.2		314512	34935305	XM_234676.2	LOC314512	XP_234676.2	ILMN_1354660	0006840040	S	209	TAGGAGTACCTACATGCACTGGGTGAATCAGAGGCCTGGAAAGGGCCTGG				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC314512), mRNA.					
Rattus norvegicus	RefSeq	GI_62664720-S	ILMN_57523	LOC498893	XM_574180.1	XM_574180.1		498893	62664720	XM_574180.1	LOC498893	XP_574180.1	ILMN_1364474	0005130176	S	314	CAACTCACTCAAGATTAAACCTGCCAAGTATGATGACATCAAGAATGTGG					PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (38 kDa BFA-dependent ADP-ribosylation substrate) (BARS-38) (LOC498893), mRNA.					
Rattus norvegicus	RefSeq	GI_47576098	ILMN_287132	OLR1401	NM_001000003.1	NM_001000003.1		287247	47576098	NM_001000003.1	Olr1401	NP_001000003.1	ILMN_1650796	0001240390	S	774	CCTCCAACCTGTCCACAGGTATTCTGAGAAGGAGGGAAAATTTCTTGCCC	10	+	34998820-34998869	10q22	Rattus norvegicus olfactory receptor 1401 (Olr1401), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1401; ratchr10-34999096-35000031_ORF	Olr1401; ratchr10-34999096-35000031_ORF
Rattus norvegicus	RefSeq	GI_62641414-S	ILMN_62124	BUB3_PREDICTED	XM_341943.2	XM_341943.2		361662	62641414	XM_341943.2	Bub3_predicted	XP_341944.2	ILMN_1369840	0003870632	S	2480	CCACCACCCAGGGAACCTGGCTGCAGCACCCCTAATCTGCATTGGAATAT				1q41	PREDICTED: Rattus norvegicus budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) (predicted) (Bub3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506514-S	ILMN_265349	CRK	NM_019302.1	NM_019302.1		54245	9506514	NM_019302.1	Crk	NP_062175.1	ILMN_1361978	0002370670	S	746	GGCCCATTTATGCCAGGGTTATCCAGAAGCGAGTCCCTAATGCCTACGAC	10	+	63028849-63028898	10q24	Rattus norvegicus v-crk sarcoma virus CT10 oncogene homolog (avian) (Crk), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 9560161] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 15167895] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence TAS]; Any process that modulates the frequency, rate or extent of Rac protein signal transduction [goid 35020] [evidence IMP]; Any process that modulates the frequency, rate or extent of the movement of a cell [goid 51270] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IMP]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively with a phosphorylated amino acid residue within a protein [goid 45309] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Crko	Crko
Rattus norvegicus	RefSeq	GI_27676441-S	ILMN_273412	RGD1311676_PREDICTED	XM_001076481.1	XM_001076481.1		292706	109461404	XM_001076481.1	RGD1311676_predicted	XP_001076481.1	ILMN_1375072	0004560050	S	636	CTCTGAATGAGGACGAGCCATACGAGGGCATCACCTTCGAGGACTTCTTC				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700008P20 (predicted) (RGD1311676_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651989-S	ILMN_69694	CCDC53_PREDICTED	XM_216873.3	XM_216873.3		299707	109480422	XM_216873.3	Ccdc53_predicted	XP_216873.1	ILMN_1361976	0001190487	S	646	GAAGCCAGATGCTCCGGTGCCGAGTGGCGAGAGTGAAAAAGCCATAGAAG	7	+	24942190-24942239	7q13	PREDICTED: Rattus norvegicus coiled-coil domain containing 53 (predicted) (Ccdc53_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54019423-S	ILMN_301387	PCDHA1	NM_199503.1	NM_199503.1		393085	54019423	NM_199503.1	Pcdha1	NP_955797.1	ILMN_1350900	0006350735	S	1979	CGGCTACCGTGTTGGTATCTCTGGTGGAAAGCAGTCCGATTCAGAAAGCC	18	+	29663538-29663587	18p11	Rattus norvegicus protocadherin alpha 1 (Pcdha1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	rCNRv01	rCNRv01
Rattus norvegicus	RefSeq	GI_62644839-S	ILMN_51430	RGD1306599_PREDICTED	XM_231116.4	XM_231116.4		311840	109467970	XM_231116.4	RGD1306599_predicted	XP_231116.1	ILMN_1360557	0000580048	S	1083	GGGGCGGGCCTCAGCATGTGTAACTCCAGGCTTCCTGAAACAAGCAGGAT	3	+	8832184-8832233	3p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900073H19 (predicted) (RGD1306599_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526926-S	ILMN_294366	LARS	NM_001009637.1	NM_001009637.1		291624	57526926	NM_001009637.1	Lars	NP_001009637.1	ILMN_1356375	0002370121	S	3496	CGACGAGTTCCAGTCCTGGGGAGAGAGCAGAACGAGAAGACACTCATTTC	18	-	35399462-35399511	18p11	Rattus norvegicus leucyl-tRNA synthetase (Lars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6429] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu) [goid 4823] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC105585	MGC105585
Rattus norvegicus	RefSeq	GI_62647386-S	ILMN_64526	LOC500162	XM_575514.1	XM_575514.1		500162	62647386	XM_575514.1	LOC500162	XP_575514.1	ILMN_1353710	0000670095	S	18	ACTCAGTTTATTGGGTTCTTGTGGCTCTGGTTTGCAGGTGCCAGATGCGA				4q31	PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC500162), mRNA.					
Rattus norvegicus	RefSeq	GI_62666084-S	ILMN_57526	RGD1560555_PREDICTED	XM_577908.2	XM_577908.2		502426	109509505	XM_577908.2	RGD1560555_predicted	XP_577908.2	ILMN_1374712	0004060070	S	523	GAGACGCTCTCCCCAGGCCTTGTACATCTGGAAGGTGGAGGGCAGCAAAT	20	-	36939970-36940019	20q11	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1560555_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660138-S	ILMN_287032	MGC124824	XM_001061021.1	XM_001061021.1		498332	109500265	XM_001061021.1	MGC124824	XP_001061021.1	ILMN_1370889	0006840164	S	1920	AAAATCTAAGTGAGGTCAAGTCACCCCCCAGCTCACACGCCAGGGTCCCC				14p22	PREDICTED: Rattus norvegicus similar to 2310002F18Rik protein (MGC124824), mRNA.					
Rattus norvegicus	RefSeq	GI_62660551-S	ILMN_266981	GBA3_PREDICTED	XM_001057209.1	XM_001057209.1		289687	109500686	XM_001057209.1	Gba3_predicted	XP_001057209.1	ILMN_1366951	0006760292	S	1321	GAAGATCCCGCTAGACCCCGGACTCCATACAGATCAGCCAAGGAATATGC				14q11	PREDICTED: Rattus norvegicus glucosidase, beta, acid 3 (cytosolic) (predicted) (Gba3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638269-S	ILMN_63796	RGD1561757_PREDICTED	XM_218099.4	XM_218099.4		292438	109457491	XM_218099.4	RGD1561757_predicted	XP_218099.4	ILMN_1360801	0004150020	S	2169	CAGCACCAGGGGGAAGGTTATGGTCGTTGTGGAGGTTTTCTCCATCTTGG	1	+	765776-765825	1p13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1561757_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850631-S	ILMN_268233	CAR5B	NM_001005551.1	NM_001005551.1		302669	53850631	NM_001005551.1	Car5b	NP_001005551.1	ILMN_1356489	0007100711	S	1486	TTCAGTGTTAGTCCCACTCTTAGGAGGCGAATGGCTTTCAAAGGTTAGGC	X	+	51290152-51290201	Xq21	Rattus norvegicus carbonic anhydrase 5b, mitochondrial (Car5b), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93720	MGC93720
Rattus norvegicus	RefSeq	GI_34935630-S	ILMN_69080	LOC366766	XM_345753.1	XM_345753.1		366766	34935630	XM_345753.1	LOC366766	XP_345754.1	ILMN_1351511	0006200037	S	171	GGGGAGGGGGCAAAATTCAACCCCGAAGCCCCTAAAACAGACCCTGGCTT				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC366766), mRNA.					
Rattus norvegicus	RefSeq	GI_62658066-S	ILMN_285747	RTP1_PREDICTED	XM_001056529.1	XM_001056529.1		288006	109494621	XM_001056529.1	Rtp1_predicted	XP_001056529.1	ILMN_1372859	0004810239	S	566	CATCCATGTGGCCAGCAGGCAGGACAACCGGCGACACCGCGGAGAGTTCT				11q23	PREDICTED: Rattus norvegicus receptor transporter protein 1 (predicted) (Rtp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660035-S	ILMN_279988	RGD1308581_PREDICTED	XM_001060943.1	XM_001060943.1		360906	109500228	XM_001060943.1	RGD1308581_predicted	XP_001060943.1	ILMN_1353930	0006650717	S	2923	ATCTCAGCTAGGTGTGGTGATACTTGCCCTTACTCCCAGCAGAGGCATGC				14p22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900024C23 (predicted) (RGD1308581_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758355-S	ILMN_286944	ZFP423	NM_053583.1	NM_053583.1		94188	16758355	NM_053583.1	Zfp423	NP_446035.1	ILMN_1365347	0004060010	S	4006	GCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACATCCAATCA	19	+	20738744-20738793	19p11	Rattus norvegicus zinc finger protein 423 (Zfp423), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Roaz	Roaz
Rattus norvegicus	RefSeq	GI_62663432-A	ILMN_277469	CAGE1	NM_001012052.1	NM_001012052.1		306872	58865671	NM_001012052.1	Cage1	NP_001012052.1	ILMN_1376667	0003360047	S	2512	GGGGGACCTTCTGGAGAGCAAAGAAGACCACTACAGCAGGCTCATCGAGG	17	+	33049568-33049617	17p12	Rattus norvegicus cancer antigen 1 (Cage1), mRNA.					
Rattus norvegicus	RefSeq	GI_47577542-S	ILMN_268621	OLR508	NM_001000677.1	NM_001000677.1		404880	47577542	NM_001000677.1	Olr508	NP_001000677.1	ILMN_1371421	0001850148	S	39	CTTGATGGGAATCACTAAGAACCCTGACCTGCAGGCCCCATTGTTTGGGT	3	-	69709353-69709402	3q24	Rattus norvegicus olfactory receptor 508 (Olr508), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr508	Olr508
Rattus norvegicus	RefSeq	GI_62645381-S	ILMN_267210	KBTBD4_PREDICTED	XM_001077889.1	XM_001077889.1		311185	109470304	XM_001077889.1	Kbtbd4_predicted	XP_001077889.1	ILMN_1365812	0006420717	S	1975	GCACAGCCCCCCTTACCAGATCAGTGTTAAAAAGAAGCACCTTGGGTCCC				3q24	PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain containing 4 (predicted) (Kbtbd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643926-S	ILMN_272156	RBM8_PREDICTED	XM_001059872.1	XM_001059872.1		295284	109467212	XM_001059872.1	Rbm8_predicted	XP_001059872.1	ILMN_1361722	0002570280	S	754	CAACCTCAGTGAGGCCTTCTGAGTGGTTGTGAAGCTACTTCTGTGTGGCG				2q34	PREDICTED: Rattus norvegicus RNA binding motif protein 8 (predicted) (Rbm8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640382-S	ILMN_287734	RGD1561206_PREDICTED	XM_001056406.1	XM_001056406.1		308678	109462059	XM_001056406.1	RGD1561206_predicted	XP_001056406.1	ILMN_1357542	0006550152	S	553	TGCAGCTCAGGGGGAGCCCAATCTGCGAGAGGCTATAATCACCATGTATA				1q22	PREDICTED: Rattus norvegicus similar to solute carrier family 25 (mitochondrial deoxynucleotide carrier), member 19 (predicted) (RGD1561206_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664516-S	ILMN_269161	RGD1309038	XM_001059165.1	XM_001059165.1		307393	109507383	XM_001059165.1	RGD1309038	XP_001059165.1	ILMN_1372395	0005910047	S	3683	GAGATGGCTGAAGACTGCTACCTGAAGACTCTATCCCTGTGCCCGCCATG				18q12.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D430044G18 (RGD1309038), mRNA.					
Rattus norvegicus	RefSeq	GI_62665972-S	ILMN_271945	LOC679430	XM_001056304.1	XM_001056304.1		679430	109510114	XM_001056304.1	LOC679430	XP_001056304.1	ILMN_1353746	0004070433	S	754	GTATTCTCCCAGAGCACAAGTCCTCCTCCAGGCCCAAACCCAGAGCTTAA					PREDICTED: Rattus norvegicus hypothetical protein LOC679430 (LOC679430), mRNA.					
Rattus norvegicus	RefSeq	GI_57164126-S	ILMN_289064	RQCD1	NM_001009357.1	NM_001009357.1		301513	57164126	NM_001009357.1	Rqcd1	NP_001009357.1	ILMN_1356570	0003360619	S	3179	CAGCTGGCCTTGGACCTACATAGGAGTTGAATGAGGAGGAGTGCAACGGG	9	+	73870269-73870318	9q33	Rattus norvegicus rcd1 (required for cell differentiation) homolog 1 (S. pombe) (Rqcd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC95021	MGC95021
Rattus norvegicus	RefSeq	GI_62662190-I	ILMN_55220	PHF7_PREDICTED	XM_573852.1	XM_573852.1		364510	62662190	XM_573852.1	Phf7_predicted	XP_573852.1	ILMN_1375301	0002360161	S	403	TCGCGGACTGAGCAGCTTGCATTTGCCACGACCGTCCTCAACTGTTTTGA				16p16	PREDICTED: Rattus norvegicus PHD finger protein 7 (predicted) (Phf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393048-S	ILMN_268782	CARTPT	NM_017110.1	NM_017110.1		29131	8393048	NM_017110.1	Cartpt	NP_058806.1	ILMN_1356902	0005900403	S	631	TCCACCTGACACATTCTTGTGACCTTTCTGGGAAGAAGAGGGACTTTCGC	2	-	30889976-30890025	2q12	Rattus norvegicus CART prepropeptide (Cartpt), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [pmid 9590691] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IEA]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence ISS]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence IEA]; The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion [goid 1696] [evidence TAS]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence ISS]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; Any process that reduces appetite [goid 32099] [evidence ISS]; Any process that reduces appetite [goid 32099] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of epinephrine [goid 32812] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of epinephrine [goid 32812] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone remodeling, the processes of bone formation and resorption that combine to maintain skeletal integrity [goid 46850] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone remodeling, the processes of bone formation and resorption that combine to maintain skeletal integrity [goid 46850] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51971] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51971] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IEA]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence IEA]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence IEA]; Any process that reduces appetite [goid 32099] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of epinephrine [goid 32812] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone remodeling, the processes of bone formation and resorption that combine to maintain skeletal integrity [goid 46850] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51971] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [pmid 15908120] [evidence IDA]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; Feeding behavior in a fully developed and mature organism [goid 8343] [pmid 9590691] [evidence IDA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [pmid 9590691] [evidence IDA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [pmid 15680948] [evidence IDA]; Any process that reduces appetite [goid 32099] [pmid 9590691] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of epinephrine [goid 32812] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours [goid 32922] [pmid 15680948] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone remodeling, the processes of bone formation and resorption that combine to maintain skeletal integrity [goid 46850] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51971] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18777746-S	ILMN_289678	MGEA5	NM_131904.1	NM_131904.1		154968	18777746	NM_131904.1	Mgea5	NP_571979.1	ILMN_1370257	0000630300	S	2575	AGCATGATGGCTTGCCTCCTGTCTTCACTAAAGGCCAATGGCTCCCGGGG	1	-	250966512-250966522:250969176-250969214	1q54	Rattus norvegicus meningioma expressed antigen 5 (hyaluronidase) (Mgea5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]	O-GLCNACASE; Ncoat	O-GLCNACASE; Ncoat
Rattus norvegicus	RefSeq	GI_62644178-S	ILMN_63195	CYB561D1_PREDICTED	XM_342315.3	XM_342315.3		362017	109465438	XM_342315.3	Cyb561d1_predicted	XP_342316.2	ILMN_1358595	0006770497	S	532	GGCTACAGTAACGGTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCTC	2	-	203764636-203764685	2q34	PREDICTED: Rattus norvegicus cytochrome b-561 domain containing 1 (predicted) (Cyb561d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664409-S	ILMN_49633	RGD1565393_PREDICTED	XM_574149.2	XM_574149.2		498864	109506586	XM_574149.2	RGD1565393_predicted	XP_574149.2	ILMN_1368967	0002630112	S	1064	GGAGCACCAAGAGGCCAAAGAGAAGCCCACGGAAAAGAAGGCTGAGGAGC	18	+	45363069-45363118	18q11	PREDICTED: Rattus norvegicus similar to Znf domain containing protein isoform b (predicted) (RGD1565393_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980979-S	ILMN_263744	GPR1	NM_012961.1	NM_012961.1		25457	6980979	NM_012961.1	Gpr1	NP_037093.1	ILMN_1351081	0003390110	S	944	CCTCTGTTGCCGAGGTACTAAAGCGGTCACTGTGGGAGGCCAGTTGCTCT	9	-	61837875-61837924	9q31	Rattus norvegicus G protein-coupled receptor 1 (Gpr1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656255-S	ILMN_291728	LOC691644	XM_001077547.1	XM_001077547.1		691644	109488217	XM_001077547.1	LOC691644	XP_001077547.1	ILMN_1371839	0002680035	S	7406	ACTGCAATCAAAGGTCAAAGCATACAAGAGACAAGCCGAGGAAGCGGAGG	10	+	53915822-53915867:53917689-53917692	10q24	PREDICTED: Rattus norvegicus similar to Myosin heavy chain, skeletal muscle, adult 2 (Myosin heavy chain IIa) (MyHC-IIa), transcript variant 6 (LOC691644), mRNA.					
Rattus norvegicus	RefSeq	GI_62645409-S	ILMN_269686	RGD1563263_PREDICTED	XM_001078348.1	XM_001078348.1		499836	109470336	XM_001078348.1	RGD1563263_predicted	XP_001078348.1	ILMN_1357615	0000780520	S	380	GCCTATGTGCAGTAAGAAGGCCCAGCAGGGGTCCGAGTAAACACACCCAC				3q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700029I15 (predicted) (RGD1563263_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648019-S	ILMN_48463	RGD1310433_PREDICTED	XM_238368.4	XM_238368.4		297514	109472457	XM_238368.4	RGD1310433_predicted	XP_238368.3	ILMN_1369675	0000780121	S	6453	CAGTCTGGGAGAGCATTGGGAGTGGAAATCATGTTGCCTGGGATGCCGGT	4	+	149027091-149027140	4q42	PREDICTED: Rattus norvegicus similar to mKIAA1757 protein (predicted) (RGD1310433_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981437-S	ILMN_286093	PTHLH	NM_012636.1	NM_012636.1		24695	6981437	NM_012636.1	Pthlh	NP_036768.1	ILMN_1373926	0003190110	S	709	GCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGGTCATGTGAA				4q44	Rattus norvegicus parathyroid hormone-like peptide (Pthlh), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence IEA]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte differentiation [goid 32331] [evidence ISS]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence IEA]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	PLP	PLP
Rattus norvegicus	Unigene	Rn.34796	ILMN_160664	RN.34796	Rn.34796		Rn.34796		23692952	BU744261			ILMN_1530201	0003120056	S	43	TTTCTTGTGTTTGAGAAAGAATGAGGAGGCAAACAGTAAGGCAGAAATGA					RA2 Injured rat spinal cord cDNA library Rattus norvegicus cDNA, mRNA					
Rattus norvegicus	RefSeq	GI_62644403-S	ILMN_264244	PPA2_PREDICTED	XM_001075518.1	XM_001075518.1		310856	109467570	XM_001075518.1	Ppa2_predicted	XP_001075518.1	ILMN_1370291	0004070053	S	984	CCGCAACTGATGGGGACTCTGGGGCTTCTGCACTGAGACTTTAAACCTCC				2q43	PREDICTED: Rattus norvegicus pyrophosphatase (inorganic) 2 (predicted) (Ppa2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651892-S	ILMN_285559	RGD1561079_PREDICTED	XR_009306.1	XR_009306.1		299698	109481785	XR_009306.1	RGD1561079_predicted		ILMN_1363815	0002510332	S	509	GAATCCGGGGGAGCTTTGTGGCAAACGGACAAGTGGCAAGCATTTGCCCC				7q13	PREDICTED: Rattus norvegicus similar to integral membrane protein 2A (predicted) (RGD1561079_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649050-S	ILMN_54443	PRPF4_PREDICTED	XM_233022.3	XM_233022.3		298095	62649050	XM_233022.3	Prpf4_predicted	XP_233022.3	ILMN_1371671	0004230373	S	2320	CTGCACACTGGGCCTTGTGAGAGCTCTTCCTTTTGGCTTTGAAGTTTGGC				5q24	PREDICTED: Rattus norvegicus PRP4 pre-mRNA processing factor 4 homolog (yeast) (predicted) (Prpf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62339305-S	ILMN_275119	PCDHB5_PREDICTED	XM_001055177.1	XM_001055177.1		291654	109506467	XM_001055177.1	Pcdhb5_predicted	XP_001055177.1	ILMN_1349273	0006550603	S	2211	GGTAGCTCGTGACTCTGCAAAGGATGGTGCGGACTTGCTCACGCTCTATC	18	+	30129402-30129451	18p11	PREDICTED: Rattus norvegicus protocadherin beta 5 (predicted) (Pcdhb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41054851-S	ILMN_264756	LGI4	NM_199499.1	NM_199499.1		361549	41054851	NM_199499.1	Lgi4	NP_955793.1	ILMN_1368575	0005270139	S	2295	ACGTCACAGTTGCTGGGCAGTTTCTTGGCCTGGTACTCTGCTGCCTGTGC	1	+	86112808-86112857	1q21	Rattus norvegicus leucine-rich repeat LGI family, member 4 (Lgi4), mRNA.		A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928829-S	ILMN_301545	PTEN	NM_031606.1	NM_031606.1		50557	13928829	NM_031606.1	Pten	NP_113794.1	ILMN_1361561	0006350142	S	1056	GGAGCCATCAAATCCAGAGGCTAGCAGTTCAACTTCTGTGACTCCAGACG	1	+	236837105-236837154	1q52	Rattus norvegicus phosphatase and tensin homolog (Pten), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IDA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence IEA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]; The process of removing a phosphate group from any mono- or polyphosphorylated inositol [goid 46855] [evidence IEA]; The process of removing a phosphate group from any mono- or polyphosphorylated inositol [goid 46855] [evidence ISS]; The process of removing one or more phosphate groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46856] [evidence IEA]; The process of removing one or more phosphate groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46856] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IDA]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of phagocytosis [goid 50765] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51895] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51895] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence ISS]	Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IDA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3-phosphate + H2O = 1-phosphatidyl-1D-myo-inositol + phosphate [goid 4438] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3-phosphate + H2O = 1-phosphatidyl-1D-myo-inositol + phosphate [goid 4438] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence TAS]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the reaction: phosphatidylinositol-3,4,5-trisphosphate + H2O = phosphatidyl inositol-4,5-bisphosphate + phosphate [goid 16314] [evidence ISS]; Catalysis of the reaction: phosphatidylinositol-3,4,5-trisphosphate + H2O = phosphatidyl inositol-4,5-bisphosphate + phosphate [goid 16314] [evidence IEA]; Catalysis of the reaction: phosphatidylinositol-3,4,5-trisphosphate + H2O = phosphatidyl inositol-4,5-bisphosphate + phosphate [goid 16314] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Catalysis of the reaction: inositol-1,3,4,5-tetrakisphosphate + H2O = inositol-1,4,5-trisphosphate + phosphate [goid 51717] [evidence IEA]; Catalysis of the reaction: inositol-1,3,4,5-tetrakisphosphate + H2O = inositol-1,4,5-trisphosphate + phosphate [goid 51717] [evidence ISS]; Catalysis of the reaction: phosphatidylinositol-3,4-bisphosphate + H2O = phosphatidyl inositol-4-phosphate + phosphate [goid 51800] [evidence IEA]; Catalysis of the reaction: phosphatidylinositol-3,4-bisphosphate + H2O = phosphatidyl inositol-4-phosphate + phosphate [goid 51800] [evidence ISS]	TEP1; MMAC1; Mmac	TEP1; MMAC1; Mmac
Rattus norvegicus	RefSeq	GI_62641572-S	ILMN_294657	ADAM8_PREDICTED	XM_001056686.1	XM_001056686.1		309098	109463088	XM_001056686.1	Adam8_predicted	XP_001056686.1	ILMN_1352866	0002940079	S	2828	CTGCAGAAAGGAGTCAGAAAGCTGCCCCCCAAGTGCCTGTCCCAAGGGGA				1q41	PREDICTED: Rattus norvegicus a disintegrin and metalloprotease domain 8 (predicted), transcript variant 3 (Adam8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666716-S	ILMN_68578	LOC302582	XM_228805.3	XM_228805.3		302582	62666716	XM_228805.3	LOC302582	XP_228805.3	ILMN_1367538	0006110452	S	3647	GGGCTTACAATGCCCAAAGACTGCTAGGATGACATTTGCCTAGGATAGGG				Xq14	PREDICTED: Rattus norvegicus similar to Kruppel-like factor 8 (LOC302582), mRNA.					
Rattus norvegicus	RefSeq	GI_62667303-S	ILMN_55141	LOC503471	XM_579025.1	XM_579025.1		503471	62667303	XM_579025.1	LOC503471	XP_579025.1	ILMN_1360431	0003190315	S	386	CGAACCCGGGACAACATACGTGCAAGACATCAGAAAGGAGATCCACAAGT					PREDICTED: Rattus norvegicus similar to PSARL protein (LOC503471), mRNA.					
Rattus norvegicus	RefSeq	GI_53850617-S	ILMN_288358	MYG1	NM_001005545.1	NM_001005545.1		300258	53850617	NM_001005545.1	Myg1	NP_001005545.1	ILMN_1357075	0000130048	S	894	CTGGACAGTGGCGAGTCCAGTGTGTGCCCAAGGAGCCTCACTCATTCCAA	7	+	141087215-141087264	7q36	Rattus norvegicus melanocyte proliferating gene 1 (Myg1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC95325	MGC95325
Rattus norvegicus	RefSeq	GI_62657656-S	ILMN_61186	RGD1562683_PREDICTED	XM_346910.3	XM_346910.3		360700	109492937	XM_346910.3	RGD1562683_predicted	XP_346911.1	ILMN_1356348	0006110619	S	238	GAGCTACCGGCTGACTGCGTACTTTCAGAAGCCCGAGGACCAGAAACTTC	11	-	33731606-33731639:33741475-33741490	11q11	PREDICTED: Rattus norvegicus RGD1562683 (predicted) (RGD1562683_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640728-S	ILMN_297130	RGD1560280_PREDICTED	XM_001063833.1	XM_001063833.1		308724	109462163	XM_001063833.1	RGD1560280_predicted	XP_001063833.1	ILMN_1360958	0002190102	S	2895	TCGTAGCCTGCACTTTGAGCAATGGGACCTGTGTGGGATTCCTTGTCTAC				1q31	PREDICTED: Rattus norvegicus similar to hypothetical protein D430020F16 (predicted) (RGD1560280_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642930-S	ILMN_68521	SNAG1_PREDICTED	XM_226769.4	XM_226769.4		310097	109464393	XM_226769.4	Snag1_predicted	XP_226769.4	ILMN_1368002	0001500129	S	3336	GCAGTGGGTGAAAATGCACTCCGTCTTAGTTTGGGGAAGTGTCTCCTGTC	2	-	45015885-45015934	2q14	PREDICTED: Rattus norvegicus sorting nexin associated golgi protein 1 (predicted) (Snag1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666289-S	ILMN_67283	RGD1562413_PREDICTED	XM_574794.2	XM_574794.2		499470	109509629	XM_574794.2	RGD1562413_predicted	XP_574794.2	ILMN_1373676	0002260041	S	2492	CCGTGGCACAGGAACTTCTAAAGCGCATCCAGAGTCACCACACGCTCCTG	20	-	45886295-45886344	20q13	PREDICTED: Rattus norvegicus similar to armadillo repeat containing 2 (predicted) (RGD1562413_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651033-S	ILMN_283452	WDR21_PREDICTED	XM_001056278.1	XM_001056278.1		362762	109479614	XM_001056278.1	Wdr21_predicted	XP_001056278.1	ILMN_1352094	0003060348	S	1339	CATGATGCCCGGCTGCTCAGAACCATACCTTCTCCATGCCCGACCTCCAA				6q24	PREDICTED: Rattus norvegicus WD repeat domain 21 (predicted) (Wdr21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663123-S	ILMN_263370	LOC682323	XM_001059807.1	XM_001059807.1		682323	109505344	XM_001059807.1	LOC682323	XP_001059807.1	ILMN_1369717	0001770082	S	418	CGCAGATCCCCAAGGAGAAGCTTTTCGCGAAGCCGGAGCAGGTCTCTTTC					PREDICTED: Rattus norvegicus similar to Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor SRP20) (X16 protein), transcript variant 1 (LOC682323), mRNA.					
Rattus norvegicus	RefSeq	GI_62664261	ILMN_53511	LOC680361	XM_574133.2	XM_574133.2		680361	109506507	XM_574133.2	LOC680361	XP_574133.2	ILMN_1650696	0002100672	S	2449	TCTAACCCTGCGACTGGAGTTCTCCCCAATTTCAGTGAGGGGACTTTGCC	18	+	30598674-30598723	18p11	PREDICTED: Rattus norvegicus similar to protocadherin gamma subfamily B, 2 (LOC680361), mRNA.					
Rattus norvegicus	RefSeq	GI_62718291-S	ILMN_52451	LOC307706	XM_226313.3	XM_226313.3		307706	62718291	XM_226313.3	LOC307706	XP_226313.3	ILMN_1356271	0006040053	S	1107	CCTGCACTTGCAGTTGCAGCCAGAGGAAAGCAGCTGTGCTTTGGGAGAGT					PREDICTED: Rattus norvegicus hypothetical LOC307706 (LOC307706), mRNA.					
Rattus norvegicus	RefSeq	GI_62648877-S	ILMN_269401	RGD1560723_PREDICTED	XM_001062866.1	XM_001062866.1		500448	109476319	XM_001062866.1	RGD1560723_predicted	XP_001062866.1	ILMN_1375124	0002630022	S	555	CTGTCTCAGAATTTAAACGGGGTCACCATCGCGTAGAGAAGCAGGCCCTG				5q22	PREDICTED: Rattus norvegicus RGD1560723 (predicted) (RGD1560723_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61889086-S	ILMN_58834	TIMM10	NM_172074.2	NM_172074.2		64464	61889086	NM_172074.2	Timm10	NP_742071.1	ILMN_1361283	0001400458	S	966	GAGCTCTCCTGGCTAAGGAAGGGGACTTGTCATGCTGGTTTGTGACTGTG	3	+	68040269-68040318	3q24	Rattus norvegicus translocase of inner mitochondrial membrane 10 homolog (yeast) (Timm10), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IEA]	The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the mitochondria inner membrane. Inner membrane proteins are first imported into the matrix space where the matrix-targeting sequence is removed; how these proteins then are incorporated into the inner membrane is not known [goid 45039] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tim10	Tim10
Rattus norvegicus	RefSeq	GI_62650055-S	ILMN_61255	H6PD_PREDICTED	XM_233688.4	XM_233688.4		298655	109475866	XM_233688.4	H6pd_predicted	XP_233688.4	ILMN_1374882	0005220148	S	2582	AGTGGCCCATCTCGGGTGTGGTGCCTCTTTCTGGACAGCTGGTTTGGTAC	5	-	167095913-167095962	5q36	PREDICTED: Rattus norvegicus hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) (predicted) (H6pd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655985-S	ILMN_271290	SOX30_PREDICTED	XM_001069002.1	XM_001069002.1		303068	109490589	XM_001069002.1	Sox30_predicted	XP_001069002.1	ILMN_1357629	0004810128	S	2841	CGGAAGGACCAGAGGAGAAGCGTGTGGCTGAGAAAGCAGTTTCTGTGCTC				10q21	PREDICTED: Rattus norvegicus SRY-box containing gene 30 (predicted) (Sox30_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656125-S	ILMN_287655	LOC691468	XM_001078417.1	XM_001078417.1		691468	109488174	XM_001078417.1	LOC691468	XP_001078417.1	ILMN_1354800	0000610736	S	492	CCAGAGCGTCCCAGATGTGAAGAATGTGAATGGCCGGAATGAGGTCAGCC	10	+	45128181-45128194:45130176-45130211	10q22	PREDICTED: Rattus norvegicus similar to Zinc finger protein 84 (Zinc finger protein HPF2) (LOC691468), mRNA.					
Rattus norvegicus	RefSeq	GI_56961657-S	ILMN_58274	MGC95210	NM_001005532.3	NM_001005532.3		287798	71534296	NM_001005532.3	MGC95210	NP_001005532.2	ILMN_1353322	0004200541	S	2190	CGGACGCCTCTCGATGCTGTTTGCTGGCTACTTTGTCCTGTGCTGTAGCT	10	+	103320601-103320650	10q32.1	Rattus norvegicus hypothetical LOC287798 (MGC95210), mRNA.				MGC95088; MGC116358	MGC95088; MGC116358
Rattus norvegicus	RefSeq	GI_19173775-S	ILMN_284841	SLCO6B1	NM_133412.1	NM_133412.1		170925	19173775	NM_133412.1	Slco6b1	NP_596903.1	ILMN_1373407	0004850092	S	2378	TTGATTGAGACATCCCATCTAAAGGACTGGAGAACCTGTGAGGGTCCAGG	9	-	96130184-96130210:96133564-96133586	9q36	Rattus norvegicus solute carrier organic anion transporter family, member 6b1 (Slco6b1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence TAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	GST-1; Tst1	GST-1; Tst1
Rattus norvegicus	RefSeq	GI_62650361-S	ILMN_265532	RGD1565906_PREDICTED	XM_001060474.1	XM_001060474.1		362702	109478945	XM_001060474.1	RGD1565906_predicted	XP_001060474.1	ILMN_1364676	0001190750	S	1503	TCCAATGCTGTGTATGTAGCAGGGGTCAATCGCTGTGAATGACTAGGGCC				6q13	PREDICTED: Rattus norvegicus similar to lysocardiolipin acyltransferase isoform 1 (predicted) (RGD1565906_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882596-S	ILMN_52362	LOC367523	XM_346193.3	XM_346193.3		367523	109512921	XM_346193.3	LOC367523	XP_346194.3	ILMN_1351441	0003940102	S	277	CAGACATCATCCCCTGAAAATATCCTAAACAAGGTGCAGGCCAACGAGGA	Un|NW_047848.1	-	342820-342869		PREDICTED: Rattus norvegicus hypothetical LOC367523 (LOC367523), mRNA.					
Rattus norvegicus	RefSeq	GI_34875919-S	ILMN_68317	RGD1562647_PREDICTED	XM_344197.3	XM_344197.3		364086	109499351	XM_344197.3	RGD1562647_predicted	XP_344198.3	ILMN_2040384	0005820243	S	2377	CTTCCTGTCTACCACAGTACCAGAGGGAAGGTTATGGTAGTTGTGGAGGT	14	+	851186-851235	14p22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1562647_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660079-S	ILMN_68317	RGD1562647_PREDICTED	XM_344197.3	XM_344197.3		364086	109499351	XM_344197.3	RGD1562647_predicted	XP_344198.3	ILMN_1365121	0003120242	S	2221	GTCATTGCATTCCACTTTACCCTGGGATACTTGGGCACTTTGGCTCTGAT	14	+	851030-851079	14p22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1562647_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16306469-S	ILMN_262920	RIMS1	NM_052829.1	NM_052829.1		84556	16306469	NM_052829.1	Rims1	NP_439894.1	ILMN_1358657	0000430278	S	5483	GTGCTTTCGTTGTTTGTGTGCTGTTTGCTGATTCTTTTTGCCCCGTTGCC	9	-	21089155-21089204	9q13	Rattus norvegicus regulating synaptic membrane exocytosis 1 (Rims1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [pmid 9252191] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31632] [pmid 9252191] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12163476] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rim1	Rim1
Rattus norvegicus	RefSeq	GI_62656508	ILMN_53318	TMEM93_PREDICTED	XM_213394.3	XM_213394.3		287477	109488502	XM_213394.3	Tmem93_predicted	XP_213394.1	ILMN_1649962	0002350471	S	436	TGGACATTCCTCTATGGCATGGTGCACGTCTACTGAAATGAGGTCAGGGG	10	-	60053200-60053214:60053215-60053249	10q24	PREDICTED: Rattus norvegicus transmembrane protein 93 (predicted) (Tmem93_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577796	ILMN_301772	OLR1233	NM_001001084.1	NM_001001084.1		405975	47577796	NM_001001084.1	Olr1233	NP_001001084.1	ILMN_1650618	0002060180	S	589	GCCAGTGAGCTGGTAAGTTCTGTTTCTGTGGCTGTGGTTGTTGTTATGTC	8	+	40533481-40533530	8q22	Rattus norvegicus olfactory receptor 1233 (Olr1233), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1233	Olr1233
Rattus norvegicus	RefSeq	GI_62654518-S	ILMN_296567	LOC367191	XR_009207.1	XR_009207.1		367191	109485617	XR_009207.1	LOC367191		ILMN_1352627	0000450411	S	573	AACAGATCTGCGTGGTCATGTTGGAGTCCCCCCTGAAGGGCGTGACCATC				8q32	PREDICTED: Rattus norvegicus similar to Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) (LOC367191), mRNA.		The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643529-S	ILMN_273736	RGD1562738_PREDICTED	XM_001064775.1	XM_001064775.1		499631	109466767	XM_001064775.1	RGD1562738_predicted	XP_001064775.1	ILMN_1369579	0004200347	S	1194	ATATCCTCCCAGGGGCCGAGCAATTTCAGTAACCGAGGCCAGGCAGAGGT				2q31	PREDICTED: Rattus norvegicus similar to FLJ16641 protein (predicted) (RGD1562738_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646644-S	ILMN_273290	ABCF2_PREDICTED	XM_001057136.1	XM_001057136.1		311959	109472920	XM_001057136.1	Abcf2_predicted	XP_001057136.1	ILMN_1374147	0005890438	S	1819	TGAGTTCGAGGGTGGCATGATGCTCGTCAGCCATGACTTCAGACTCATCC				4q11	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) (Abcf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649508-S	ILMN_55368	PTCH1_PREDICTED	XM_345570.2	XM_345570.2		366452	62649508	XM_345570.2	Ptch1_predicted	XP_345571.2	ILMN_1351177	0004560100	S	2354	TGCCCCAAGTTTTGCCAGAGTGACTACCTCCATGACTGTGGCCCTCCACC				5q36	PREDICTED: Rattus norvegicus patched homolog 1 (predicted) (Ptch1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659109-S	ILMN_67172	LOC360830	XM_341103.2	XM_341103.2		360830	62659109	XM_341103.2	LOC360830	XP_341104.2	ILMN_1371374	0002850563	S	2	GGAAGGTGACTCTTTGAGAGAACACAGTCCTAAGGACTCACGGATGATTG					PREDICTED: Rattus norvegicus similar to Putative methyltransferase HUSSY-03 (Williams-Beuren syndrome chromosome region 22 protein homolog) (LOC360830), mRNA.					
Rattus norvegicus	RefSeq	GI_56090290-S	ILMN_271906	PIGQ	NM_001007607.1	NM_001007607.1		287159	56090290	NM_001007607.1	Pigq	NP_001007608.1	ILMN_1371277	0002640593	S	2774	CCTAGGGGCCAGGAAACCCCACTGCCTGATGGTCTAGAAGTGTCTGCTGT	10	-	15188457-15188506	10q12	Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis, class Q (Pigq), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane [goid 16254] [evidence ISS]	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol [goid 17176] [evidence IEA]	MGC93737	MGC93737
Rattus norvegicus	RefSeq	GI_62664140-S	ILMN_65627	LOC362725	XM_343047.2	XM_343047.2		362725	62664140	XM_343047.2	LOC362725	XP_343048.2	ILMN_1353448	0005220138	S	478	GTCCAAATGGCTAAGATCAGAAACTGAGGTGAGAACAGATGTTGGGGAGG					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC362725), mRNA.					
Rattus norvegicus	RefSeq	GI_34854377-S	ILMN_65627	LOC362725	XM_343047.2	XM_343047.2		362725	62664140	XM_343047.2	LOC362725	XP_343048.2	ILMN_1367277	0000450593	S	590	GGAAATCATCTGGAGGTTCCTCAGAAAATTGGACATTGAACTGCCTGAGG					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC362725), mRNA.					
Rattus norvegicus	RefSeq	GI_62646571	ILMN_69498	PCDHB20_PREDICTED	XM_226036.3	XM_226036.3		291642	62646571	XM_226036.3	Pcdhb20_predicted	XP_226036.3	ILMN_1649972	0000580438	S	2596	CACAACAGAGCTGCAGGGGAACTCAAGCCCATCCACTACCAGAAGCTGCG					PREDICTED: Rattus norvegicus protocadherin beta 20 (predicted) (Pcdhb20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14249139-S	ILMN_278014	LSR	NM_032616.1	NM_032616.1		64355	14249139	NM_032616.1	Lsr	NP_116005.1	ILMN_1371645	0005130707	S	1893	AATACCCCCCAGCACCTCCACCTTACTCAGAGACTGACTCGCAGGCCTCA	1	-	85994090-85994139	1q21	Rattus norvegicus lipolysis stimulated lipoprotein receptor (Lsr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence IDA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [pmid 10224102] [evidence TAS]; Interacting selectively with any triester of glycerol [goid 17129] [pmid 10224102] [evidence TAS]	MGC124592; Lisch7	MGC124592; Lisch7
Rattus norvegicus	RefSeq	GI_62654945	ILMN_268534	NMS	NM_001012233.1	NM_001012233.1		497196	58866035	NM_001012233.1	NMS	NP_001012233.1	ILMN_1650277	0001940278	S	307	GGCCGCCAAGCTTCCCAGCAGAAGGATGAAAAGACTACCGCGATTGCTGC	9	+	37935328-37935377	9q21	Rattus norvegicus neuromedin S (NMS), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; The rhythm of the locomotor activity of an organism during its 24 hour activity cycle [goid 45475] [evidence IDA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_11067440-S	ILMN_266112	PPP3R2	NM_021701.1	NM_021701.1		29749	11067440	NM_021701.1	Ppp3r2	NP_067733.1	ILMN_1362545	0004540504	S	348	CGGGGAGCTCTTCCAGGTGCTTAAGATGATGGTGGGAAACAACCTCAAGG	5	-	66423974-66424023	5q22	Rattus norvegicus protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II) (Ppp3r2), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Cblp	Cblp
Rattus norvegicus	RefSeq	GI_47575924-S	ILMN_265985	OLR1475	NM_001000027.1	NM_001000027.1		287487	47575924	NM_001000027.1	Olr1475	NP_001000027.1	ILMN_1358727	0003140707	S	864	CATCTACAGCCTGAGGAACAGAGATATAAAGGAGGCCCTTGTAAGAGTCC	10	-	60446680-60446729	10q24	Rattus norvegicus olfactory receptor 1475 (Olr1475), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1475	Olr1475
Rattus norvegicus	RefSeq	GI_62656649-S	ILMN_287818	LOC688528	XR_006415.1	XR_006415.1		688528	109488655	XR_006415.1	LOC688528		ILMN_1351732	0003130347	S	769	CCCTGAATCCACTGGTGCTGCCAAGGCTGTGGGTAAGGTCATTCCAGAAC	10	+	70056499-70056548	10q26	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC688528), mRNA.					
Rattus norvegicus	RefSeq	GI_62647266-S	ILMN_58748	HOXA7_MAPPED	XM_575478.2	XM_575478.2		500126	109472059	XM_575478.2	Hoxa7_mapped	XP_575478.2	ILMN_1372418	0004070438	S	2437	CTGCAGTTCCAGAAGACGCGGTGCCCTCCGTTTCCACGGCTGCTGACAAG	4	-	80515795-80515844	4q24	PREDICTED: Rattus norvegicus homeo box A7 (mapped) (Hoxa7_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62647255-S	ILMN_58113	LOC502766	XM_578264.1	XM_578264.1		502766	62647255	XM_578264.1	LOC502766	XP_578264.1	ILMN_1360720	0003520180	S	655	AATGCAAATTGGAGTGCCCACCGCAGACCAAACGACCCTACGCAGAGGGC					PREDICTED: Rattus norvegicus similar to NIK (LOC502766), mRNA.					
Rattus norvegicus	RefSeq	GI_58331158-S	ILMN_280188	YC2	NM_001009920.1	NM_001009920.1		494500	58331158	NM_001009920.1	Yc2	NP_001009920.1	ILMN_1359094	0004920398	S	1036	CCTTGTCAAACAGCGTCACGTAGAAACCCTCGTGTCAAACTCTCTTACGC	9	+	20031947-20031996	9q13	Rattus norvegicus glutathione S-transferase Yc2 subunit (Yc2), mRNA.					
Rattus norvegicus	RefSeq	GI_34861845-S	ILMN_282761	RGD1563463_PREDICTED	XM_001072081.1	XM_001072081.1		293699	109463442	XM_001072081.1	RGD1563463_predicted	XP_001072081.1	ILMN_1358746	0004850528	S	289	GATGCCAGGAACCCGTCTCTCAAGCAGCAACTCTTCGCCTATGCCATTCC					PREDICTED: Rattus norvegicus similar to ATP synthase lipid-binding protein, mitochondrial precursor (ATP synthase proteolipid P1) (predicted) (RGD1563463_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654124-S	ILMN_64460	LOC367136	XM_345966.2	XM_345966.2		367136	62654124	XM_345966.2	LOC367136	XP_345967.2	ILMN_1356619	0004480736	S	275	CCACCAGCCCACAGTACGGTATAGGCAAAGCCTCTCAGACTACCACCAGC					PREDICTED: Rattus norvegicus similar to cytosolic thymidine kinase (LOC367136), mRNA.					
Rattus norvegicus	RefSeq	GI_62643654-S	ILMN_58383	LOC365808	XM_345219.2	XM_345219.2		365808	62643654	XM_345219.2	LOC365808	XP_345220.2	ILMN_1364033	0005390035	S	406	GCTGGCCTGTTAAACCAAGTGGGGCTACAGAATGGAAATGCCTGGAGAGG					PREDICTED: Rattus norvegicus similar to voltage-gated potassium channel beta subunit (LOC365808), mRNA.					
Rattus norvegicus	RefSeq	GI_62651008-A	ILMN_267420	DLK1	NM_053744.1	NM_053744.1		114587	16758571	NM_053744.1	Dlk1	NP_446196.1	ILMN_1376387	0002970047	S	1187	TGCAGTACAACAGCGGCGAGGAGCTGGCGGTCAATATCATCTTCCCGGAG	6	+	134028884-134028933	6q32	Rattus norvegicus delta-like 1 homolog (Drosophila) (Dlk1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Zog; Pref-1	Zog; Pref-1
Rattus norvegicus	RefSeq	GI_62662301-S	ILMN_287845	RGD1565329_PREDICTED	XR_009542.1	XR_009542.1		502047	109503711	XR_009542.1	RGD1565329_predicted		ILMN_1359341	0007000154	S	319	CCCCTACTGGTGACATTCTTTCTGGTCTTCTCTAGGTATGCTAACTTCAG				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1565329_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34328537-S	ILMN_278394	LDHAL6B	NM_183334.1	NM_183334.1		369018	34328537	NM_183334.1	Ldhal6b	NP_899163.1	ILMN_1367693	0002680358	S	1171	AGGTGAAGCTGAGCCCTACAGAGGAGGCCCAGATGGTAAAGAGCGCAGAC	1	-	40399347-40399396	1q11	Rattus norvegicus lactate dehydrogenase A-like 6B (Ldhal6b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	 [goid 19642] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Ldhl	Ldhl
Rattus norvegicus	RefSeq	GI_16923951-S	ILMN_277492	ACSL3	NM_057107.1	NM_057107.1		114024	16923951	NM_057107.1	Acsl3	NP_476448.1	ILMN_1368504	0005690369	S	2076	CCCACTGAAAATTCGTTTGAGCCCTGACCCATGGACTCCCGAAACTGGTC	9	+	78106241-78106290	9q33	Rattus norvegicus acyl-CoA synthetase long-chain family member 3 (Acsl3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence TAS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence TAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA [goid 3987] [evidence IDA]; Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA [goid 3987] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	Acs3; Facl3	Acs3; Facl3
Rattus norvegicus	RefSeq	GI_62664904	ILMN_67531	RGD1562877_PREDICTED	XM_216073.4	XM_216073.4		296780	109507784	XM_216073.4	RGD1562877_predicted	XP_216073.3	ILMN_1650858	0006770711	S	993	CAACGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTGCAAGAGAACTGG	19	+	14808852-14808876:14809585-14809609	19p11	PREDICTED: Rattus norvegicus RGD1562877 (predicted) (RGD1562877_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647323-S	ILMN_61607	RGD1562793_PREDICTED	XM_575489.2	XM_575489.2		500137	109472074	XM_575489.2	RGD1562793_predicted	XP_575489.1	ILMN_1349191	0001740270	S	1493	GGCGTCGAAGAGTATGTTGCGGAGTAAAGACAGCACACGGCATACTTCGG	4	-	84476506-84476555	4q24	PREDICTED: Rattus norvegicus similar to NEX-1 (predicted) (RGD1562793_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639817-S	ILMN_283230	RGD1559980_PREDICTED	XM_001080931.1	XM_001080931.1		499158	109462012	XM_001080931.1	RGD1559980_predicted	XP_001080931.1	ILMN_1367318	0004920400	S	36	ATGAGGAGCCGGCACAAGTCTACGCCGAAGGACCACGACGACACTATCCT				1q22	PREDICTED: Rattus norvegicus RGD1559980 (predicted) (RGD1559980_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653160-S	ILMN_60534	LOC314600	XM_234860.3	XM_234860.3		314600	62653160	XM_234860.3	LOC314600	XP_234860.3	ILMN_1360469	0001740068	S	885	AGTTTCATATGTAGACATTGTGGTGAACCTTTCCTGTATTCCACGGCCCG					PREDICTED: Rattus norvegicus similar to zinc finger protein 422, related sequence 1 (LOC314600), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666942-S	ILMN_262906	RGD1565054_PREDICTED	XM_001066800.1	XM_001066800.1		299041	109512007	XM_001066800.1	RGD1565054_predicted	XP_001066800.1	ILMN_1352448	0001660136	S	54	TTGGGGTGAGGCCCTCACTTCATCTGGTGACTAGCACCATGCTGGCAGTC				Xq31	PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P1 (predicted) (RGD1565054_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661621-S	ILMN_52395	TDH_PREDICTED	XM_214217.4	XM_214217.4		290315	109501805	XM_214217.4	Tdh_predicted	XP_214217.4	ILMN_1364866	0003060050	S	1256	GCACTAGAGTTGCCCAAGTGAACTGAAAGTGGAGGAGCAGCCCCCGTGTC	15	-	42758628-42758652:42758653-42758677	15p12	PREDICTED: Rattus norvegicus L-threonine dehydrogenase (predicted) (Tdh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948433-S	ILMN_290545	MKRN1	NM_001004233.1	NM_001004233.1		296988	51948433	NM_001004233.1	Mkrn1	NP_001004233.1	ILMN_1365259	0004280170	S	876	AGCCAACCCCAGCGAGCGTCGTTTTGGGATCCTCTCCAACTGCAACCACA	4	-	66912311-66912360	4q22	Rattus norvegicus makorin ring finger protein 1 (Mkrn1), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Mkrn1	Mkrn1
Rattus norvegicus	RefSeq	GI_62717799-S	ILMN_48703	LOC501225	XM_576648.1	XM_576648.1		501225	62717799	XM_576648.1	LOC501225	XP_576648.1	ILMN_1374878	0002680400	S	933	TCGAGGGACTCAGAGAAGTGCTGATACACATCAATCAAGAGCTGCTGGTC					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC501225), mRNA.					
Rattus norvegicus	RefSeq	GI_62665456-S	ILMN_284789	RGD1562218	NM_001034919.1	NM_001034919.1		292100	77917539	NM_001034919.1	RGD1562218	NP_001030091.1	ILMN_1352045	0004200465	S	3691	GTAGGGCGTTGTGATTGTCTTAGGGTGGTCTTTTGATCCCCGCCCCAAAG	19	-	55019479-55019528	19q12	Rattus norvegicus similar to RIKEN cDNA 0610039J04 (RGD1562218), mRNA.				MGC124748	MGC124748
Rattus norvegicus	RefSeq	GI_62660885-S	ILMN_60370	LOC305583	XM_223687.3	XM_223687.3		305583	62660885	XM_223687.3	LOC305583	XP_223687.3	ILMN_1374752	0003130114	S	1564	GGCCGCCAGCTCTGGATGACTAGCTGTCGCATTTGACTACAGAGGGGTTC				14q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933435A13 (predicted) (LOC305583), mRNA.					
Rattus norvegicus	RefSeq	GI_62718830-S	ILMN_64967	LOC503417	XM_578956.1	XM_578956.1		503417	62718830	XM_578956.1	LOC503417	XP_578956.1	ILMN_1352531	0005570647	S	1033	CCTCTGCCAACTGGTCTCCACACTTTTCCTACGACCATAAAGACTTCAAC					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC503417), mRNA.					
Rattus norvegicus	RefSeq	GI_62653593-S	ILMN_293455	CD3G	XM_001067846.1	XM_001067846.1		300678	109484613	XM_001067846.1	Cd3g	XP_001067846.1	ILMN_1365676	0000510154	S	532	GGTCTACCAGCCCCTCAAGGACCGGGAATATGAACAGTACAGCCGTCTCC				8q22	PREDICTED: Rattus norvegicus CD3 antigen, gamma polypeptide (Cd3g), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein [goid 42105] [evidence ISS]; A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein [goid 42105] [evidence IEA]	Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns [goid 7163] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647574-S	ILMN_50095	LOC502826	XM_578326.1	XM_578326.1		502826	62647574	XM_578326.1	LOC502826	XP_578326.1	ILMN_1361486	0000460050	S	338	CTGTCAGCAGTATTATGATACTCCTCCCACAGTGCTACAGCCTCCTACAC				4q32	PREDICTED: Rattus norvegicus similar to Ig kappa chain V-IV region precursor (LOC502826), mRNA.					
Rattus norvegicus	RefSeq	GI_34881394-S	ILMN_289656	RGD1561230_PREDICTED	XM_001066195.1	XM_001066195.1		302776	109512286	XM_001066195.1	RGD1561230_predicted	XP_001066195.1	ILMN_1361591	0000450010	S	484	GGCAATCTTCCCAATACATGTGTAAAACTGGGGGCACGTGCTATTTTCCC				Xq33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921511C20 gene (predicted) (RGD1561230_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653157-S	ILMN_268011	NCKAP1L_PREDICTED	XM_001070373.1	XM_001070373.1		315348	109483014	XM_001070373.1	Nckap1l_predicted	XP_001070373.1	ILMN_1372165	0006020168	S	3320	ATGCGCTTGGTGGTGGAGGAGTCACCCTTCTTGACCCTGGACATGCTGGA				7q36	PREDICTED: Rattus norvegicus NCK associated protein 1 like (predicted) (Nckap1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162354-S	ILMN_286674	DCK	NM_024158.1	NM_024158.1		79127	13162354	NM_024158.1	Dck	NP_077072.1	ILMN_1369056	0000730487	S	350	CCAGCTTGCCTCTCTCAACGGCAGCCTCAGGGATGCAGAGAAACCTGTAT	14	-	20895467-20895516	14p22	Rattus norvegicus deoxycytidine kinase (Dck), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence IDA]; The chemical reactions and pathways involving deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA [goid 46092] [evidence IDA]; The chemical reactions and pathways involving deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA [goid 46092] [evidence IMP]; The chemical reactions and pathways involving deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA [goid 46092] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: NTP + deoxycytidine = NDP + CMP [goid 4137] [evidence IEA]; Catalysis of the reaction: NTP + deoxycytidine = NDP + CMP [goid 4137] [evidence IMP]; Catalysis of the reaction: NTP + deoxycytidine = NDP + CMP [goid 4137] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside = ADP + nucleoside monophosphate [goid 19206] [evidence ISS]; Interacting selectively with a pyrimidine deoxyribonucleoside, a compound consisting of a pyrimidine base linked to deoxyribose [goid 32548] [evidence IMP]; Interacting selectively with a pyrimidine deoxyribonucleoside, a compound consisting of a pyrimidine base linked to deoxyribose [goid 32548] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62643701-S	ILMN_60601	TIGD4_PREDICTED	XM_227318.3	XM_227318.3		295162	109464995	XM_227318.3	Tigd4_predicted	XP_227318.1	ILMN_1371563	0001450373	S	1451	AGAGGGATACGCTGCTCTGGATGAGGACCTGGAGACTTGTGAAGACGCCC	2	+	176371139-176371188	2q34	PREDICTED: Rattus norvegicus tigger transposable element derived 4 (predicted) (Tigd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639448-S	ILMN_55737	LOC502316	XM_577780.1	XM_577780.1		502316	62639448	XM_577780.1	LOC502316	XP_577780.1	ILMN_1372711	0003390039	S	1210	GAATTCACGCTGGTAAGAAAGCCTACGAGGATGAGGACTGTGGGAAGAGC				1q21	PREDICTED: Rattus norvegicus similar to Zinc finger protein 566 (LOC502316), mRNA.					
Rattus norvegicus	RefSeq	GI_62650736-S	ILMN_51928	LOC500657	XM_576035.1	XM_576035.1		500657	62650736	XM_576035.1	LOC500657	XP_576035.1	ILMN_1369885	0001500114	S	3221	GGCCATTTTACCAAAAGCCTTGTCCTGTGAAACCCAAGTCAAACTGACTG					PREDICTED: Rattus norvegicus similar to LRRG00130 (LOC500657), mRNA.					
Rattus norvegicus	RefSeq	GI_62666558	ILMN_59578	LOC501523	XM_576925.1	XM_576925.1		501523	62666558	XM_576925.1	LOC501523	XP_576925.1	ILMN_1650852	0002650014	S	1168	CACACCAGACTTTTCGTCAGAGACTATGAAAGCCAGAAGGTCCTGCTTCG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501523), mRNA.					
Rattus norvegicus	RefSeq	GI_57528274-S	ILMN_288555	COQ10B	NM_001009671.1	NM_001009671.1		301416	57528274	NM_001009671.1	Coq10b	NP_001009671.1	ILMN_1349555	0004280593	S	1459	GTGGGCGACATACGTAGTTCCCATGTCTGCAGCACACGCAGGCCATTCCT	9	+	53878499-53878548	9q31	Rattus norvegicus coenzyme Q10 homolog B (S. cerevisiae) (Coq10b), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]			MGC109115	MGC109115
Rattus norvegicus	RefSeq	GI_47576388-S	ILMN_296561	OLR1560	NM_001001009.1	NM_001001009.1		405383	47576388	NM_001001009.1	Olr1560	NP_001001009.1	ILMN_1350954	0004670707	S	611	TGCCAATTCAAGTCTTTACTATTGCCACTGTCTTGGTCTCTTACTTCTGC	11	+	42419311-42419360	11q12	Rattus norvegicus olfactory receptor 1560 (Olr1560), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1560	Olr1560
Rattus norvegicus	RefSeq	GI_62640865-S	ILMN_58195	RGD1305254_PREDICTED	XM_218855.4	XM_218855.4		308797	109458932	XM_218855.4	RGD1305254_predicted	XP_218855.4	ILMN_1374741	0000870100	S	4011	GTGGTGATTGATGGGAGTCGAGGTCATGTGGTAAGCCTCGGTAGCTTCAG	1	-	140209610-140209659	1q31	PREDICTED: Rattus norvegicus similar to transmembrane protein 2 (predicted) (RGD1305254_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254718-S	ILMN_292520	VCPIP1	NM_176857.2	NM_176857.2		286761	40254718	NM_176857.2	Vcpip1	NP_789827.2	ILMN_1355470	0000580427	S	4850	GCATTCATTAACTCTTCCGTGCCAGTTTCCTCCTCCAAGCAGCTTTATGC	5	+	9115864-9115913	5q11	Rattus norvegicus valosin containing protein (p97)/p47 complex interacting protein 1 (Vcpip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IMP]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IMP]; The joining of 2 or more lipid bilayer membranes that surround the endoplasmic reticulum [goid 16320] [evidence IDA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IDA]	Catalysis of the hydrolysis of various forms of polymeric ubiquitin sequences. Will remove ubiquitin from larger leaving groups [goid 4843] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	Vcip135	Vcip135
Rattus norvegicus	RefSeq	GI_62661509-S	ILMN_266362	MCPT8L2	XM_001058006.1	XM_001058006.1		408240	109502448	XM_001058006.1	Mcpt8l2	XP_001058006.1	ILMN_1370540	0000730021	S	773	AGGAGGGGAAGGCTACCAGTGAGAGAGACTCAGGGGGTCCCTTTGTGTGT				15p12	PREDICTED: Rattus norvegicus mast cell protease 8-like 2 (Mcpt8l2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643803-S	ILMN_276463	LOC685152	XM_001062555.1	XM_001062555.1		685152	109465094	XM_001062555.1	LOC685152	XP_001062555.1	ILMN_1369461	0006380176	S	3541	CGCAGGAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCGGAGCTGAGAA	2	-	182162235-182162284	2q34	PREDICTED: Rattus norvegicus similar to Probable phospholipid-transporting ATPase ID (ATPase class I type 8B member 2) (LOC685152), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the movement of phospholipids from one membrane face to the other ('flippase' activity), driven by the hydrolysis of ATP [goid 4012] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663675-S	ILMN_282556	EPC1_PREDICTED	XM_001058881.1	XM_001058881.1		307042	109505897	XM_001058881.1	Epc1_predicted	XP_001058881.1	ILMN_1355431	0004570279	S	3769	GATTCTCCAGAAGGCTGCGAGGCCAGAACCACAAATATCGGGTGCCTTCC				17q12.1	PREDICTED: Rattus norvegicus enhancer of polycomb homolog 1 (Drosophila) (predicted), transcript variant 1 (Epc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645086-S	ILMN_63905	LOC497768	XM_579674.1	XM_579674.1		497768	62645086	XM_579674.1	LOC497768	XP_579674.1	ILMN_1362042	0000940021	S	926	AACCCTCAAATCTTAGAGCTCCGTGTTTGCCAGCTGGAGACCATAATGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_145788 (LOC497768), mRNA.					
Rattus norvegicus	RefSeq	GI_62645799-S	ILMN_53290	LOC296115	XM_215843.3	XM_215843.3		296115	62645799	XM_215843.3	LOC296115	XP_215843.3	ILMN_1350948	0006110193	S	3263	GCATCTGTTACTGTCCCCTACCCTCTAAGCAGCAGTGTGGCACCAAGGCA				3q36	PREDICTED: Rattus norvegicus similar to mKIAA0256 protein (LOC296115), mRNA.					
Rattus norvegicus	RefSeq	GI_62642504-S	ILMN_67563	RGD1559884_PREDICTED	XM_574694.2	XM_574694.2		499377	109460273	XM_574694.2	RGD1559884_predicted	XP_574694.1	ILMN_1352117	0000060138	S	981	GAAGCACAAACCACAGATGACCAACAGGGGTCCGCCTCACTAACTGTTGT	1	+	262763222-262763271	1q55	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9930023K05 (predicted) (RGD1559884_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664509-S	ILMN_61648	IL17B	XM_341621.3	XM_341621.3		116472	109506695	XM_341621.3	Il17b	XP_341622.2	ILMN_1368073	0006860215	S	207	TACGCCCGAATGGAAGAGTACGAGAGGAACCTTGGCGAGATGGTGGCCCA	18	+	57667392-57667441	18q12.1	PREDICTED: Rattus norvegicus interleukin 17B (Il17b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47087116-S	ILMN_276167	MRPS18B	NM_212534.1	NM_212534.1		294230	47087116	NM_212534.1	Mrps18b	NP_997699.1	ILMN_1371151	0002350014	S	784	GTCAGACTTAGGGAGTGGTGTCTAGGGGTATGTGGTGGTGTGTGTTCTGG	20	+	2991778-2991827	20p12	Rattus norvegicus mitochondrial ribosomal protein S18B (Mrps18b), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	Ptd017	Ptd017
Rattus norvegicus	RefSeq	GI_47576590-S	ILMN_270646	OLR1662	NM_001000107.1	NM_001000107.1		291361	47576590	NM_001000107.1	Olr1662	NP_001000107.1	ILMN_1361095	0004210273	S	198	ATCTTTCCTGGATCTATGTTTCACAACAAGCATTGTCCCTCAGATGCTGG	17	-	51306457-51306506	17q11	Rattus norvegicus olfactory receptor 1662 (Olr1662), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1662	Olr1662
Rattus norvegicus	RefSeq	GI_62646771-S	ILMN_57754	PFTK1_PREDICTED	XM_342632.3	XM_342632.3		362316	109471683	XM_342632.3	Pftk1_predicted	XP_342633.3	ILMN_1355708	0001580411	S	1534	CTGTCCCAAATGTGAGATTGCAACCCGAAGCTGGAGAGAGCATGAGGGCC	4	+	25865030-25865079	4q12-q13	PREDICTED: Rattus norvegicus PFTAIRE protein kinase 1 (predicted) (Pftk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718656-S	ILMN_51921	LOC363408	XM_576854.1	XM_576854.1		363408	62718656	XM_576854.1	LOC363408	XP_576854.1	ILMN_1369403	0006660731	S	1114	GAACATGACACAGACCTGGGCAAGATCTCCCTTGGTGAGAAGTGGTACAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC363408), mRNA.					
Rattus norvegicus	RefSeq	GI_62658491-S	ILMN_270241	OLR1572_PREDICTED	XM_001072702.1	XM_001072702.1		288490	109496623	XM_001072702.1	Olr1572_predicted	XP_001072702.1	ILMN_1352525	0005290168	S	914	TAAATCTCACGCCGCTGCTGTACCCAGCCATCTACACACTGCGCAACCGG				12p11	PREDICTED: Rattus norvegicus olfactory receptor 1572 (predicted) (Olr1572_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50428578-S	ILMN_290834	BCMO1	NM_053648.2	NM_053648.2		114106	50428578	NM_053648.2	Bcmo1	NP_446100.1	ILMN_1360882	0002100735	S	1735	CCCACAGGTCTGACAGCACCAGGATTGGGCCATGGTGAAAATGACTTCAC	19	+	47239029-47239078	19q12	Rattus norvegicus beta-carotene 15,15'-monooxygenase 1 (Bcmo1), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: beta-carotene + O2 = 2 retinal [goid 3834] [evidence IDA]; Catalysis of the reaction: beta-carotene + O2 = 2 retinal [goid 3834] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Bcdo	Bcdo
Rattus norvegicus	RefSeq	GI_62647321-S	ILMN_61513	LOC312365	XM_231787.3	XM_231787.3		312365	62647321	XM_231787.3	LOC312365	XP_231787.3	ILMN_1367619	0002370100	S	2783	GTCTTCAGGGGGAGACAAGGTTCTGCTGGCTTTCCAGGGACGTAGTGCAG				4q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC312365), mRNA.					
Rattus norvegicus	RefSeq	GI_62645508-S	ILMN_62482	LOC499853	XM_575194.1	XM_575194.1		499853	62645508	XM_575194.1	LOC499853	XP_575194.1	ILMN_1369696	0002810167	S	815	AGCAGACAACTTCCTGTGGCCTTACAAATTATCTTCCCTACGAGGTGGAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L7, cytosolic - mouse (LOC499853), mRNA.					
Rattus norvegicus	RefSeq	GI_62653259-S	ILMN_66786	RGD1309410_PREDICTED	XM_347094.3	XM_347094.3		363020	109483093	XM_347094.3	RGD1309410_predicted	XP_347095.2	ILMN_1373690	0005050324	S	702	TCTCCGGGTGACACTGTGCTTCCTGGCTCCGTTCACAGCTTTCTAAGGGG	8	+	12347778-12347827	8q12	PREDICTED: Rattus norvegicus LOC363020 (predicted) (RGD1309410_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662085	ILMN_282901	ITGBL1	NM_001017505.1	NM_001017505.1		498564	62945367	NM_001017505.1	Itgbl1	NP_001017505.1	ILMN_1650212	0002680592	S	2156	CACATATGAGGTGTAATGATGTAGGCTGGGGGCTTACCAGATCACAAGGG	15	+	109050895-109050944	15q25	Rattus norvegicus integrin, beta-like 1 (Itgbl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667607-S	ILMN_269510	PLXNA3_MAPPED	XM_001055498.1	XM_001055498.1		309280	109462318	XM_001055498.1	Plxna3_mapped	XP_001055498.1	ILMN_1360444	0005220735	S	5697	ATCCTCACCTCGCTGGACCGAGATGCCTCTTGTCGGAAGCATAAGCTTCG				Xq37	PREDICTED: Rattus norvegicus plexin A3 (mapped) (Plxna3_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_31341306-S	ILMN_293404	ABCG2	NM_181381.2	NM_181381.2		312382	31341306	NM_181381.2	Abcg2	NP_852046.1	ILMN_1362628	0004560484	S	1935	TCAGGGCATCGATCTGTCACCTTGGGGACTGTGGAGGAATCATGTGGCCC	4	+	87559777-87559826	4q24	Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 2 (Abcg2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells [goid 15893] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of a drug into, out of, within or between cells. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 15238] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IPI]	BCRP1	BCRP1
Rattus norvegicus	RefSeq	GI_62078600-S	ILMN_284194	SLC25A34	NM_001013936.1	NM_001013936.1		298606	62078600	NM_001013936.1	Slc25a34	NP_001013958.1	ILMN_1369437	0005360358	S	1077	CCCGCGGCAAGCCTGACATCTGGTGGAAGTGATGACCAGTAGGACTGACT	5	-	160520041-160520090	5q36	Rattus norvegicus solute carrier family 25, member 34 (Slc25a34), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_41281658-A	ILMN_288688	CAV1	NM_133651.1	NM_133651.1		25404	41281658	NM_133651.1	Cav1	NP_598412.1	ILMN_1376388	0005080577	S	118	GTGATTGCGGAACCAGAAGGGACACACAGTTTCGACGGCATCTGGAAGGC	4	+	42986863-42986912	4q21	Rattus norvegicus caveolin, caveolae protein 1 (Cav1), transcript variant 2, mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence TAS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 19217] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence ISS]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell differentiation [goid 30857] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence IMP]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence IMP]; A homeostatic process involved in the maintenance of an internal equilibrium of nitric oxide within an organism or cell [goid 33484] [evidence ISS]; A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure [goid 42310] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42524] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45019] [evidence ISS]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of endocytosis [goid 45807] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence ISS]; The addition of tubulin heterodimers to one or both ends of a microtubule [goid 46785] [evidence IMP]; Any process that activates, maintains or increases the rate activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal [goid 48554] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins [goid 52547] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IMP]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Increases the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 16504] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence IPI]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IMP]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence ISS]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]	Cav1; caveolin 1	Cav1; caveolin 1
Rattus norvegicus	RefSeq	GI_62667185-S	ILMN_48149	LOC503449	XM_578999.1	XM_578999.1		503449	62667185	XM_578999.1	LOC503449	XP_578999.1	ILMN_1367127	0001450324	S	884	CCATGTCAGGCAAACCGAAAATGGCAGCAGTTACCCCGAGGAGAAGGCAG					PREDICTED: Rattus norvegicus LOC503449 (LOC503449), mRNA.					
Rattus norvegicus	RefSeq	GI_34871754	ILMN_267882	FKBP6_PREDICTED	XM_001071214.1	XM_001071214.1		288597	109497091	XM_001071214.1	Fkbp6_predicted	XP_001071214.1	ILMN_1649858	0006380242	S	730	CAGGCTCTGCTCATTGACAAAAGGAACGCCAAAGCCCTCTTCAGGTGTGG				12q12	PREDICTED: Rattus norvegicus FK506 binding protein 6 (predicted) (Fkbp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656388-S	ILMN_295671	TPSD1_PREDICTED	XM_001059716.1	XM_001059716.1		287136	109490374	XM_001059716.1	Tpsd1_predicted	XP_001059716.1	ILMN_1371584	0006130079	S	461	TCACAAAGAAGGATGTGTGCTGGGTGACCGGCTGGGGTTCAGTGAGCATG				10q12	PREDICTED: Rattus norvegicus tryptase delta 1 (predicted) (Tpsd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16418484-S	ILMN_298371	SLC5A5	NM_052983.1	NM_052983.1		114613	16418484	NM_052983.1	Slc5a5	NP_443215.1	ILMN_1348860	0004210278	S	2594	TCACACACTAGGCAACTGCTCCACCACAGGACCTCACACCTAGACCTCCG	16	+	19056058-19056107	16p14	Rattus norvegicus solute carrier family 5 (sodium iodide symporter), member 5 (Slc5a5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of iodide into, out of, within or between cells [goid 15705] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: iodide(out) + Na+(out) = iodide(in) + Na+(in) [goid 8507] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: iodide(out) + Na+(out) = iodide(in) + Na+(in) [goid 8507] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: iodide(out) + Na+(out) = iodide(in) + Na+(in) [goid 8507] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence ISS]	Nis	Nis
Rattus norvegicus	RefSeq	GI_54312089-S	ILMN_295275	RGD1359713	NM_001005882.1	NM_001005882.1		305340	54312089	NM_001005882.1	RGD1359713	NP_001005882.1	ILMN_1366226	0001740603	S	1926	GGGGACCAGAAAGGCAAGCCACCAAACCCCGCCGAAGGAACACTCTATTA	14	+	44845796-44845845	14p11	Rattus norvegicus hypothetical RNA binding protein RGD1359713 (RGD1359713), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC94215	MGC94215
Rattus norvegicus	RefSeq	GI_62718717-S	ILMN_56021	LOC315766	XM_236358.4	XM_236358.4		315766	109513865	XM_236358.4	LOC315766	XP_236358.2	ILMN_1361577	0003800528	S	8	GGCTTGTGCATCATAGCACCATCTCCTATGTCTCCATCACAGACAAGCGC	Un|NW_047947.1	+	678-727		PREDICTED: Rattus norvegicus similar to zinc finger protein 609 (LOC315766), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648274-S	ILMN_280883	LOC500350	XM_001072234.1	XM_001072234.1		500350	109474406	XM_001072234.1	LOC500350	XP_001072234.1	ILMN_1365750	0005570731	S	942	GATGGCCCCACTAGCCCATCAAGAGAGAACCTATGAAGCAGGAAGGAGAC				4q43	PREDICTED: Rattus norvegicus LRRGT00139 (LOC500350), mRNA.	A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653168-S	ILMN_61176	LOC363010	XM_343343.2	XM_343343.2		363010	62653168	XM_343343.2	LOC363010	XP_343344.2	ILMN_1352418	0002060148	S	507	CCAGGTGGGCAGAACAAGATAGAGACAGTCCGAAGTCCAACGCCACAGGG					PREDICTED: Rattus norvegicus similar to Cytochrome P450 2C7 (CYPIIC7) (P450F) (PTF1) (LOC363010), mRNA.			Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651463-S	ILMN_65332	LOC366730	XM_345723.2	XM_345723.2		366730	62651463	XM_345723.2	LOC366730	XP_345724.2	ILMN_1351718	0001990050	S	281	CGGGGCAGAGATGGATGCAATACTGGCCGTACAGCTCAAGGGAGAGGACA					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S21 (LOC366730), mRNA.					
Rattus norvegicus	RefSeq	GI_62661054-S	ILMN_277923	LOC679188	XM_001055133.1	XM_001055133.1		679188	109514646	XM_001055133.1	LOC679188	XP_001055133.1	ILMN_1369225	0002340408	S	183	AATCCAGAAGTGTAAATCTGAGCGGGATGAACTTTCTCAAATCCTGGACC					PREDICTED: Rattus norvegicus similar to Spetex-2E protein (LOC679188), mRNA.					
Rattus norvegicus	RefSeq	GI_62666513-S	ILMN_296307	RGD1564748_PREDICTED	XM_001058275.1	XM_001058275.1		302311	109511485	XM_001058275.1	RGD1564748_predicted	XP_001058275.1	ILMN_1369725	0003140156	S	6599	TCAACAGGATGCTGGGAACCCAACTGCTCTGCCAGTTTGAAAAGCCCCAG				Xq12	PREDICTED: Rattus norvegicus similar to Mortality factor 4-like protein 2 (MORF-related gene X protein) (predicted) (RGD1564748_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664082-S	ILMN_268060	DSC3_PREDICTED	XM_001053804.1	XM_001053804.1		307563	109506979	XM_001053804.1	Dsc3_predicted	XP_001053804.1	ILMN_1364452	0001500131	S	2524	GAGATGATGAAAGGCCACCAGACCTTGGACTCCTGCCGTGTTGCTGGGCA				18p12	PREDICTED: Rattus norvegicus desmocollin 3 (predicted) (Dsc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664538-S	ILMN_63328	LOC498876	XM_579878.1	XM_579878.1		498876	62664538	XM_579878.1	LOC498876	XP_579878.1	ILMN_1366568	0002190593	S	591	CCACAATGGCCGCCAGGCAGACCAGAAGATGGCTCCAGCCATCCAATACT					PREDICTED: Rattus norvegicus LOC498876 (LOC498876), mRNA.					
Rattus norvegicus	RefSeq	GI_27465610-S	ILMN_291359	CRYBA2	NM_173140.1	NM_173140.1		286925	27465610	NM_173140.1	Cryba2	NP_775163.1	ILMN_1649943	0000940639	S	507	CTACCGAGGCTACCAGTATGTCTTAGAACGGGACCGGCACAGTGGGGAGT	9	-	74222967-74223016	9q33	Rattus norvegicus crystallin, beta A2 (Cryba2), mRNA.			Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664725-S	ILMN_57793	LOC364917	XM_344713.2	XM_344713.2		364917	62664725	XM_344713.2	LOC364917	XP_344714.2	ILMN_1362406	0002570100	S	88	CTGTGAAATCGGGCCTTCATTTCTTTCCTTCCAGTCCCAGGTGCTATGGG				18q13	PREDICTED: Rattus norvegicus similar to OTTMUSP00000000438 (LOC364917), mRNA.					
Rattus norvegicus	RefSeq	GI_62650153-S	ILMN_66325	RGD1308251_PREDICTED	XM_342993.3	XM_342993.3		362676	109475908	XM_342993.3	RGD1308251_predicted	XP_342994.1	ILMN_1355873	0002100711	S	603	TCCAGCAAGCCACCCCAGTGTGATGAAGAGGTGTGTGGGAGGTGACACGT	5	-	171704384-171704389:171704390-171704416:171704834-171704850	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810405K02 (predicted) (RGD1308251_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650193	ILMN_273299	RGD1304931	XM_233725.3	XM_233725.3		313776	62650193	XM_233725.3	RGD1304931	XP_233725.3	ILMN_1650539	0003190021	S	3365	GTAGAGTGGGAAGGTAGGCGAAGGGATTGAGGTGACACAGTGATAGCCCC	5	+	173055788-173055837	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310042D19 (RGD1304931), mRNA.					
Rattus norvegicus	RefSeq	GI_25282448-S	ILMN_272663	HDLBP	NM_172039.1	NM_172039.1		64474	25282448	NM_172039.1	Hdlbp	NP_742036.1	ILMN_1370810	0000450180	S	4296	CTGACTTTCACAGCAGAGTTCCACAGCGGCTAGGAGTTGACTTCCTTGTG	9	-	92687656-92687705	9q36	Rattus norvegicus high density lipoprotein binding protein (Hdlbp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC124559	MGC124559
Rattus norvegicus	RefSeq	GI_16758005-S	ILMN_278231	HOMER2	NM_053309.1	NM_053309.1		29547	16758005	NM_053309.1	Homer2	NP_445761.1	ILMN_1365351	0005050168	S	1916	TGGGTTGGAGCGCATTCATAGTTACCCTCAGCTGCATGTGGCCTTTGGAC				1q31	Rattus norvegicus homer homolog 2 (Drosophila) (Homer2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Functions as a physical support bridging the N-methyl-D-aspartate receptor-PSD-95-GKAP complex and the mGluR-Homer complex, which are involved in receptor signaling in synapses [goid 30160] [evidence ISS]	Vesl-2	Vesl-2
Rattus norvegicus	RefSeq	GI_62650249-S	ILMN_265056	HNRPLL_PREDICTED	XM_001063027.1	XM_001063027.1		313842	109478940	XM_001063027.1	Hnrpll_predicted	XP_001063027.1	ILMN_1352173	0005130315	S	2974	CATCATCCTTTTGTATCCACATGCCTCTGTTCCTAGTTGCAGTTTGGAGG				6q11	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein L-like (predicted) (Hnrpll_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646349	ILMN_273914	LOC684696	XM_001071647.1	XM_001071647.1		684696	109471295	XM_001071647.1	LOC684696	XP_001071647.1	ILMN_1650417	0004810528	S	600	CATGATCTTCGACCTTTGACCCCCTCTCCGTCTGGGACCCTATCACCTCA					PREDICTED: Rattus norvegicus similar to WAP four-disulfide core 6-like 1 (LOC684696), mRNA.					
Rattus norvegicus	RefSeq	GI_31377529-S	ILMN_273195	RASGRP1	NM_019211.2	NM_019211.2		29434	31377529	NM_019211.2	Rasgrp1	NP_062084.2	ILMN_1357641	0004480176	S	2839	GTCTCAGGCAGCCTGCTTTACTGATTCGCACTTAGATAAAGAGCCCCTGG	3	-	103372618-103372667	3q35	Rattus norvegicus RAS guanyl releasing protein 1 (calcium and DAG-regulated) (Rasgrp1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rap family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 17034] [evidence TAS]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]	Rasgrp	Rasgrp
Rattus norvegicus	RefSeq	GI_62644693-S	ILMN_271843	PSD4	XM_001071370.1	XM_001071370.1		311785	109469412	XM_001071370.1	Psd4	XP_001071370.1	ILMN_1369661	0002940131	S	3371	ATCCCTGCACCAGGATGAGGCCCCCACCACAGCCAAGGTGAAACGTAACA				3p13	PREDICTED: Rattus norvegicus pleckstrin and Sec7 domain containing 4 (Psd4), mRNA.					
Rattus norvegicus	RefSeq	GI_62664263-S	ILMN_279189	LOC680448	XR_005755.1	XR_005755.1		680448	109506511	XR_005755.1	LOC680448		ILMN_1369226	0006940398	S	2530	CTGGGGCCTTGTTTCCACTTTGTGATTCCAGTGAGCCGACTTCCCACCCG	18	+	30642521-30642570	18p11	PREDICTED: Rattus norvegicus similar to protocadherin gamma subfamily B, 5 (LOC680448), mRNA.					
Rattus norvegicus	RefSeq	GI_62652074-S	ILMN_50803	LOC299759	XM_235088.3	XM_235088.3		299759	62652074	XM_235088.3	LOC299759	XP_235088.3	ILMN_1354432	0006620215	S	4871	CAGGACGCCAGCCTTTTTGGTTAGAGGCAACCTCGGCCCCTTTACCTCCA				7q21	PREDICTED: Rattus norvegicus similar to leucine-rich repeats and IQ motif containing 1 (LOC299759), mRNA.					
Rattus norvegicus	RefSeq	GI_62666864-S	ILMN_53254	LOC501562	XM_576967.1	XM_576967.1		501562	62666864	XM_576967.1	LOC501562	XP_576967.1	ILMN_1363743	0002030133	S	516	GATGCTGTCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501562), mRNA.					
Rattus norvegicus	RefSeq	GI_62656619-S	ILMN_59460	SSH2_PREDICTED	XM_220743.4	XM_220743.4		303342	109488623	XM_220743.4	Ssh2_predicted	XP_220743.3	ILMN_1360960	0000510546	S	4115	CCCGTCAGCAGCATGGCAGGACTCACCCGCTTAGGAGACTAAAAAGAGCA	10	-	66661726-66661775	10q26	PREDICTED: Rattus norvegicus slingshot homolog 2 (Drosophila) (predicted) (Ssh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663042-S	ILMN_68923	LOC306407	XM_224793.3	XM_224793.3		306407	62663042	XM_224793.3	LOC306407	XP_224793.3	ILMN_1370812	0005910113	S	341	GGAAGAGAGCTCTGAACCTGGAAGCCAGCCCCAATTAAATGCTGATGCTG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20035 (LOC306407), mRNA.					
Rattus norvegicus	RefSeq	GI_62638704-S	ILMN_62653	LOC502254	XM_577714.1	XM_577714.1		502254	62638704	XM_577714.1	LOC502254	XP_577714.1	ILMN_1372912	0002900086	S	2	GGGGCACATACTAAGCACACTCCCTGAGATGCCTCCTAAGTTGGTAGCAC				1q12	PREDICTED: Rattus norvegicus similar to SPBPJ4664.02 (LOC502254), mRNA.					
Rattus norvegicus	RefSeq	GI_62658216-S	ILMN_56422	KLHL22_PREDICTED	XM_221268.4	XM_221268.4		303792	109493594	XM_221268.4	Klhl22_predicted	XP_221268.4	ILMN_1367059	0006370114	S	2433	GCCTGCAGCCAGGGCATTGAGCAGCTGTGGAGTTCTCAAGGTATATGTAC	11	-	85179381-85179430	11q23	PREDICTED: Rattus norvegicus kelch-like 22 (Drosophila) (predicted) (Klhl22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718816	ILMN_286753	LOC686886	XR_009064.1	XR_009064.1		686886	109514407	XR_009064.1	LOC686886		ILMN_1650355	0000540647	S	12	GGGCTGGGTAATAGGTGTCCACTCTCACCTGCTCCAGCTTGAAGGTGCTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC686886), mRNA.					
Rattus norvegicus	RefSeq	GI_62646952-S	ILMN_66316	LOC500064	XM_575418.1	XM_575418.1		500064	62646952	XM_575418.1	LOC500064	XP_575418.1	ILMN_1351579	0006100577	S	363	GAGAGGCTGGAACGGCTGGAGGCAGACGTGACTTACCTCAGAAAGCAGGA					PREDICTED: Rattus norvegicus similar to kielin-like (LOC500064), mRNA.					
Rattus norvegicus	RefSeq	GI_62078840-S	ILMN_268118	TMEM168	NM_001014054.1	NM_001014054.1		312135	62078840	NM_001014054.1	Tmem168	NP_001014076.1	ILMN_1361618	0004810551	S	3621	CTCACCATTGAAGCCATTTTTCCAGGCCCAGAGAGAGAAGGTAACGCATC	4	-	39012567-39012616	4q21	Rattus norvegicus transmembrane protein 168 (Tmem168), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62648682-S	ILMN_58752	LOC500414	XM_575776.1	XM_575776.1		500414	62648682	XM_575776.1	LOC500414	XP_575776.1	ILMN_1360402	0004120301	S	3336	CTAGGGAAGCATCTGGAACACACGGGACAAAACGGCAACCAACAGATTGG					PREDICTED: Rattus norvegicus similar to LRRG00130 (LOC500414), mRNA.					
Rattus norvegicus	RefSeq	GI_38454235-S	ILMN_281060	SCIN	NM_198748.1	NM_198748.1		298975	38454235	NM_198748.1	Scin	NP_942043.1	ILMN_1360361	0005690010	S	1905	CACCCAGGATGACTTGGCCGAAGATGATGTCATGCTACTTGATGCGTGGG	6	-	59241294-59241343	6q21	Rattus norvegicus scinderin (Scin), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of megakaryocyte differentiation [goid 45654] [evidence ISS]; The process by which an actin filament is broken down into smaller filaments [goid 51014] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Scind	Scind
Rattus norvegicus	RefSeq	GI_62656970-A	ILMN_298777	KRT20	NM_173128.1	NM_173128.1		286912	27465584	NM_173128.1	Krt20	NP_775151.1	ILMN_1376979	0001340494	S	1220	CCAGGAAGATTAAGACGGTCGTGGAGGAAGTGGTAGACGGCAAGGTCGTG	10	-	88336006-88336055	10q32.1	Rattus norvegicus keratin 20 (Krt20), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 33554] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50708] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Krt21	Krt21
Rattus norvegicus	RefSeq	GI_62656337-S	ILMN_272123	GPS2	NM_001017477.1	NM_001017477.1		497941	62945309	NM_001017477.1	Gps2	NP_001017477.1	ILMN_1353785	0002480577	S	1161	GTACAGATACAAGCAGCCGGGAAGTCAGGCTTTGCCACCACCAGCCAACC	10	+	56759890-56759913:56760023-56760048	10q24	Rattus norvegicus G protein pathway suppressor 2 (Gps2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62717952-S	ILMN_57477	LOC501262	XM_576681.1	XM_576681.1		501262	62717952	XM_576681.1	LOC501262	XP_576681.1	ILMN_1372589	0006100193	S	351	GACATGGCGCAAACAGAAATTGTCATGGTGACTCTACTGCTGGGAGCTTC					PREDICTED: Rattus norvegicus similar to BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 isoform beta (LOC501262), mRNA.					
Rattus norvegicus	RefSeq	GI_62657774-S	ILMN_70307	RGD1565927_PREDICTED	XM_221535.4	XM_221535.4		304020	109493034	XM_221535.4	RGD1565927_predicted	XP_221535.4	ILMN_1373666	0004920068	S	3235	GCCAGCCCTTCACTGCAGGATAACAGAACTCAAGGCTTAACTAATGGGGC	11	-	43790362-43790411	11q12	PREDICTED: Rattus norvegicus similar to 4631422O05Rik protein (predicted) (RGD1565927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948401-S	ILMN_275480	PPIC	NM_001004215.1	NM_001004215.1		291463	51948401	NM_001004215.1	Ppic	NP_001004215.1	ILMN_1358331	0006940438	S	917	CCCAGTATTTGGGAGGTGCAGGCAGGAGGATCAGAAGTTCAAGGCCAGCC	18	-	48886936-48886985	18q11	Rattus norvegicus peptidylprolyl isomerase C (Ppic), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with cyclosporin A, a cyclic undecapeptide that contains several N-methylated and unusual amino acids [goid 16018] [evidence TAS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC93799	MGC93799
Rattus norvegicus	RefSeq	GI_55741459-S	ILMN_264869	PAICS	NM_080910.3	NM_080910.3		140946	55741459	NM_080910.3	Paics	NP_543186.1	ILMN_1373322	0006110242	S	1773	GGGATCTGACCCCGTGGCTTCCTTATGCACCTGCTCTCAGATTCTGTTAC	14	-	33492850-33492899	14p11	Rattus norvegicus phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (Paics), mRNA.	A protein complex that possesses phosphoribosylaminoimidazole carboxylase activity [goid 9320] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate [goid 6189] [evidence IEA]	Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO2 [goid 4638] [evidence IEA]; Catalysis of the reaction: ATP + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate = ADP + phosphate + (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate [goid 4639] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Ade2h1; MGC93240; Airc	Ade2h1; MGC93240; Airc
Rattus norvegicus	RefSeq	GI_13929025-S	ILMN_62553	KCND2	NM_031730.2	NM_031730.2		65180	76881821	NM_031730.2	Kcnd2	NP_113918.2	ILMN_1362232	0002630358	S	2346	TTAGCATTCCAACACCTCCAGTAACCACCCCAGAAGGCGACGACAGGCCC	4	+	48046252-48046301	4q22	Rattus norvegicus potassium voltage gated channel, Shal-related family, member 2 (Kcnd2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IMP]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA];  [goid 5250] [evidence IMP]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	Shal1; RK5; Kv4.2	Shal1; RK5; Kv4.2
Rattus norvegicus	RefSeq	GI_13928743-A	ILMN_275246	TAGLN	NM_031549.1	NM_031549.1		25123	13928743	NM_031549.1	Tagln	NP_113737.1	ILMN_1376842	0004610341	S	976	TACCGTTTCCCCCATCCTGGAGTAAGCAGGGAGAAGTGGGCTGAGGTAGC	8	-	48902244-48902293	8q22	Rattus norvegicus transgelin (Tagln), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence TAS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence TAS]	Sm22	Sm22
Rattus norvegicus	RefSeq	GI_62661372-S	ILMN_55126	LOC364308	XM_344333.2	XM_344333.2		364308	62661372	XM_344333.2	LOC364308	XP_344334.2	ILMN_1366380	0001450095	S	344	AGTCAAGAACGTGTGTGAATATGACCCAGGGGAGAGCCAAGGCGAGCAGG				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C920008G01 gene (LOC364308), mRNA.					
Rattus norvegicus	RefSeq	GI_62651235-A	ILMN_277801	WARS	NM_001013170.2	NM_001013170.2		314442	62460629	NM_001013170.2	Wars	NP_001013188.2	ILMN_1376738	0005900041	S	2708	CTGCATGTATGAGCCGCCCTCAGAGTCTTGGAAAGCAGAGGCCATATCTC	6	-	133200982-133201031	6q32	Rattus norvegicus tryptophanyl-tRNA synthetase (Wars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6436] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp) [goid 4830] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652629-S	ILMN_55852	RGD1305866_PREDICTED	XM_343265.3	XM_343265.3		362937	109480887	XM_343265.3	RGD1305866_predicted	XP_343266.3	ILMN_1354491	0002230450	S	3637	CAGTAGTGCGGCAGGAGACAACTTGGCAGATGAGGACACCAGGGACAGTA	7	-	114034593-114034642	7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20200 (predicted) (RGD1305866_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577962-S	ILMN_273784	OLR13	NM_001000116.1	NM_001000116.1		293075	47577962	NM_001000116.1	Olr13	NP_001000116.1	ILMN_1373270	0004120435	S	548	CCTGGATTGCCCTGGCCTGTACCAGTACACAAGGAGTGGAGACAGTGGCT	1	-	142363771-142363820	1q32	Rattus norvegicus olfactory receptor 13 (Olr13), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr13	Olr13
Rattus norvegicus	RefSeq	GI_9506728-S	ILMN_262639	GJD2	NM_019281.1	NM_019281.1		50564	9506728	NM_019281.1	Gjd2	NP_062154.1	ILMN_1368140	0004480181	S	1652	TGGCCAGGGCAGAGGTTTGCAGTAGAGCCCCATATGACTGGCCCTTAGTC	3	-	99861289-99861338	3q35	Rattus norvegicus gap junction protein, delta 2 (Gjd2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence TAS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEP]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]		Cx36	Cx36
Rattus norvegicus	RefSeq	GI_62655126-S	ILMN_67423	BMPR2	XM_217409.4	XM_217409.4		140590	109486137	XM_217409.4	Bmpr2	XP_217409.4	ILMN_1352293	0007040711	S	3345	ATCTAGCACTGCTGTGTACCTCGCAGAGGGAGGCACTGCCACAACCATGG	9	+	58435596-58435645	9q31	PREDICTED: Rattus norvegicus bone morphogenic protein receptor, type II (serine/threonine kinase) (Bmpr2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that reduces the force with which blood travels through the systemic arterial circulatory system [goid 3085] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process that modulates the force with which blood travels through the lungs. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 14916] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of vasoconstriction [goid 45906] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]	Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_40254739-S	ILMN_288174	VCP	NM_053864.2	NM_053864.2		116643	40254739	NM_053864.2	Vcp	NP_446316.1	ILMN_1363637	0007050576	S	3010	CAGCCTGGGTAGGTGGACAAGGGGCCTCAGTTTGCTGGGTGTTTATATAG	5	-	59472235-59472284	5q22	Rattus norvegicus valosin-containing protein (Vcp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IMP]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; The directed movement of unfolded or misfolded proteins from the endoplasmic reticulum to the cytosol through the translocon [goid 30970] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657894-S	ILMN_269925	RGD1566314_PREDICTED	XM_001067695.1	XM_001067695.1		288106	109494396	XM_001067695.1	RGD1566314_predicted	XP_001067695.1	ILMN_1361174	0005050433	S	2976	GAAGGTGGCCGAAATCCTTCCAGACTTCCAGATGCTGGTGCCATCGTGAT				11q21	PREDICTED: Rattus norvegicus similar to KIAA1407 (predicted) (RGD1566314_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981101-S	ILMN_267694	INHA	NM_012590.1	NM_012590.1		24504	6981101	NM_012590.1	Inha	NP_036722.1	ILMN_1363377	0001400082	S	1263	GTCCCTACGCGTCCGAACCACCTCAGATGGAGGCTACTCTTTCAAGTATG	9	+	74784014-74784063	9q33	Rattus norvegicus inhibin alpha (Inha), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IDA]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit [goid 43512] [evidence IEA]; Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit [goid 43512] [evidence IDA]; Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit [goid 43512] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46882] [evidence IMP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Acts to negatively regulate the activity of activin, a nonsteroidal regulator synthesized in the pituitary gland and gonads that stimulates the secretion of follicle-stimulating hormone [goid 17106] [evidence ISS]; Acts to negatively regulate the activity of activin, a nonsteroidal regulator synthesized in the pituitary gland and gonads that stimulates the secretion of follicle-stimulating hormone [goid 17106] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with inhibin beta-A [goid 48186] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93593	MGC93593
Rattus norvegicus	RefSeq	GI_62639169-S	ILMN_279880	EGFL4	XM_001077319.1	XM_001077319.1		114029	109461480	XM_001077319.1	Egfl4	XP_001077319.1	ILMN_1352379	0001340739	S	8311	GGGTGGTGGAGGCCGGAAGGGACTGTTAAGTCAGGACAATCTCACTAGCA				1q21	PREDICTED: Rattus norvegicus EGF-like-domain, multiple 4 (Egfl4), mRNA.					
Rattus norvegicus	RefSeq	GI_62648021-S	ILMN_48545	LOC500290	XM_575639.1	XM_575639.1		500290	62648021	XM_575639.1	LOC500290	XP_575639.1	ILMN_1358326	0005340121	S	2	GAGGCCCCTGAAGTGTGGCACTTCCACGAGGGACTCAATATTTAAGAAAA					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC500290), mRNA.					
Rattus norvegicus	RefSeq	GI_34854107-S	ILMN_64157	RGD1559946_PREDICTED	XM_344837.2	XM_344837.2		365141	109457861	XM_344837.2	RGD1559946_predicted	XP_344838.1	ILMN_1362523	0005390279	S	1515	GGCTGGTCATCACAGGCCACTACCGATGACACCTACACAGGACCACTATC	1	-	51857566-51857615	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1559946_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078494-S	ILMN_284204	ISYNA1	NM_001013880.1	NM_001013880.1		290651	62078494	NM_001013880.1	Isyna1	NP_001013902.1	ILMN_1362167	0004050397	S	1621	GCACAAGATGGAGCGCCCTTTCCCAGGCATCAAGCCAGAAGAGGTGAAGG	16	-	19345503-19345552	16p14	Rattus norvegicus myo-inositol 1-phosphate synthase A1 (Isyna1), mRNA.					
Rattus norvegicus	RefSeq	Rn.98850	ILMN_284204	ISYNA1	NM_001013880.1	NM_001013880.1		290651	62078494	NM_001013880.1	Isyna1	NP_001013902.1	ILMN_1530347	0000460170	S	1801	TACCCCAATGCCTCCAACCACTGTACTTCAGACCTTGCCAAAGACAATAA	16	-	19345323-19345372	16p14	Rattus norvegicus myo-inositol 1-phosphate synthase A1 (Isyna1), mRNA.					
Rattus norvegicus	RefSeq	GI_62718510-S	ILMN_65323	LOC501408	XM_576820.1	XM_576820.1		501408	62718510	XM_576820.1	LOC501408	XP_576820.1	ILMN_1374897	0003390204	S	404	GGGCTTACTCTGGGCAGCTGTTGACATGGGGGACTTTATTATTAACATCG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501408), mRNA.					
Rattus norvegicus	RefSeq	GI_16758809	ILMN_52862	UBE2N	NM_053928.2	NM_053928.2		116725	59709468	NM_053928.2	Ube2n	NP_446380.1	ILMN_1651183	0006040435	S	715	GCTGAGCAGTGGAAGAGCAACGAAGCCCAAGCCATAGAAACAGCAAGAGC	7	+	32748659-32748701:32749272-32749278	7q13	Rattus norvegicus ubiquitin-conjugating enzyme E2N (Ube2n), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A heterodimeric ubiquitin conjugating enzyme complex that catalyzes assembly of K63-linked polyubiquitin chains, which act as a signal to promote error-free DNA postreplication repair; in Saccharomyces the complex comprises Ubc13p and Mms2p [goid 31372] [evidence ISS]	The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule [goid 724] [evidence ISS]; The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang [goid 729] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Pathways for DNA repair which occur after DNA has replicated, e.g. mismatch repair, and which involve translesion synthesis (TLS-type) DNA polymerases [goid 6301] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of the covalent alteration of a histone [goid 31058] [evidence ISS]; Any process that modulates the frequency, rate or extent of the addition of a ubiquitin moiety to a histone protein [goid 33182] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA repair [goid 45739] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity, the catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 51443] [evidence ISS]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IMP]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]	MGC93937	MGC93937
Rattus norvegicus	RefSeq	GI_51948389-S	ILMN_302083	HSD17B11	NM_001004209.1	NM_001004209.1		289456	51948389	NM_001004209.1	Hsd17b11	NP_001004209.1	ILMN_1352987	0003710017	S	1450	AGTGTCTGTGAGATTTCGGGCTGGGGACAGATGGACAGGTGGACAGGTGG	14	+	6891366-6891415	14p22	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 11 (Hsd17b11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6710] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6710] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative [goid 16229] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative [goid 16229] [evidence IEA]	MGC93725	MGC93725
Rattus norvegicus	RefSeq	GI_62642079-S	ILMN_50082	LOC365437	XM_345013.2	XM_345013.2		365437	62642079	XM_345013.2	LOC365437	XP_345014.2	ILMN_1353764	0000110168	S	169	CACATCACCATATTGTGCGGAACAAACCTCCACTAGTGCACACAGCCGCC				1q51	PREDICTED: Rattus norvegicus similar to proteasome (prosome, macropain) subunit, beta type 6 (LOC365437), mRNA.					
Rattus norvegicus	RefSeq	GI_62651300-S	ILMN_279774	GPR132_PREDICTED	XM_001073056.1	XM_001073056.1		314480	109480050	XM_001073056.1	Gpr132_predicted	XP_001073056.1	ILMN_1364090	0004730364	S	1307	CAGATGTCACCTACTTGAAGGACTCTGAGGAGACGCACTCACCCACAGCG				6q32	PREDICTED: Rattus norvegicus G protein-coupled receptor 132 (predicted) (Gpr132_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649401-S	ILMN_279766	ZFYVE9_PREDICTED	XM_001060761.1	XM_001060761.1		313477	109476888	XM_001060761.1	Zfyve9_predicted	XP_001060761.1	ILMN_1358649	0001770750	S	4803	GCTCAGATGAATGCTCATATGGGTACAGCCATCACCAAGGTCACGGTGGG				5q35	PREDICTED: Rattus norvegicus zinc finger, FYVE domain containing 9 (predicted), transcript variant 2 (Zfyve9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642567-S	ILMN_47995	LOC365495	XM_577874.1	XM_577874.1		365495	62642567	XM_577874.1	LOC365495	XP_577874.1	ILMN_1358843	0001500528	S	581	CCGCTCCTCTGAGGTGGATTACAGAGAGCCACTTGGTGTAGCTCTGACAG				1q55	PREDICTED: Rattus norvegicus similar to carboxylesterase 5 (LOC365495), mRNA.					
Rattus norvegicus	RefSeq	GI_62655843-S	ILMN_293467	SPSB3_PREDICTED	XM_001058835.1	XM_001058835.1		302981	109490346	XM_001058835.1	Spsb3_predicted	XP_001058835.1	ILMN_1356593	0000840242	S	2076	CAGAGATGTCAGTGGGTGCCCTGGGAAGGGATTCTGTCTCGTCCCCATAG				10q12	PREDICTED: Rattus norvegicus splA/ryanodine receptor domain and SOCS box containing 3 (predicted) (Spsb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646356-S	ILMN_58024	LOC311629	XM_230844.3	XM_230844.3		311629	62646356	XM_230844.3	LOC311629	XP_230844.3	ILMN_1351464	0000610670	S	610	CCCTGTTGACTCTGGCTGGGTTGGCTGTGTGCCATCAGGAGCTGGAGGAT					PREDICTED: Rattus norvegicus similar to sorting nexin 21 isoform a; sorting nexin L; sorting nexin 21 (predicted) (LOC311629), mRNA.					
Rattus norvegicus	RefSeq	GI_47577918-S	ILMN_264445	OLR1142	NM_001000877.1	NM_001000877.1		405175	47577918	NM_001000877.1	Olr1142	NP_001000877.1	ILMN_1372824	0005220093	S	321	TGCTGGTATGGAAAATTGTCTCCTGGTAGTGATGGCCTATGACCGCTATG	8	+	17431892-17431941	8q13	Rattus norvegicus olfactory receptor 1142 (Olr1142), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1142	Olr1142
Rattus norvegicus	RefSeq	GI_62648785-S	ILMN_63642	RGD1310641	XM_345515.3	XM_345515.3		366347	109474705	XM_345515.3	RGD1310641	XP_345516.1	ILMN_1367444	0006900372	S	1888	ACCCGAGTGCCCAGACCCCAGATTTTCATAGCTGGTCTTCGTGGGGGACA	5	-	51301883-51301932	5q21	PREDICTED: Rattus norvegicus similar to hypothetical protein, transcript variant 2 (RGD1310641), mRNA.					
Rattus norvegicus	RefSeq	GI_47576784-S	ILMN_284040	OLR186	NM_001001031.1	NM_001001031.1		405917	47576784	NM_001001031.1	Olr186	NP_001001031.1	ILMN_1368107	0002680017	S	327	CACCGGCCTGGAATCTGTGGTGCTGACAGTTATGGCCATAGATCGTTATA	1	+	162810553-162810602	1q33	Rattus norvegicus olfactory receptor 186 (Olr186), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr186	Olr186
Rattus norvegicus	RefSeq	GI_62651378-S	ILMN_60619	LOC500745	XM_576124.1	XM_576124.1		500745	62651378	XM_576124.1	LOC500745	XP_576124.1	ILMN_1362444	0002810102	S	47	GGTGTGGAACTTGCTATTTCTGATGGCAGTTGCCCAAACAGGTGCCCAAG				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region (clone micro m+ 46-12) - mouse  (fragment) (LOC500745), mRNA.					
Rattus norvegicus	RefSeq	GI_8393651-S	ILMN_285244	KCNJ2	NM_017296.1	NM_017296.1		29712	8393651	NM_017296.1	Kcnj2	NP_058992.1	ILMN_1366583	0000770170	S	1162	GAGGACAGTGAGAACGGAGTTCCAGAGAGCACAAGTACGGACTCACCTCC	10	+	100576146-100576195	10q32.1	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 2 (Kcnj2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	 [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir2.1	Kir2.1
Rattus norvegicus	RefSeq	GI_62654045-S	ILMN_292349	RGD1560917_PREDICTED	XM_001063031.1	XM_001063031.1		501028	109485079	XM_001063031.1	RGD1560917_predicted	XP_001063031.1	ILMN_1349614	0004050176	S	555	TCCTAAGAATTTCCCACGCTAGAAGACCGTGACAGTGGCTAAGGTTTGTC				8q31	PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein L41 (predicted) (RGD1560917_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657368-S	ILMN_274629	RGD1311078_PREDICTED	XM_001081737.1	XM_001081737.1		360664	109492253	XM_001081737.1	RGD1311078_predicted	XP_001081737.1	ILMN_1362281	0000580717	S	459	AGGCTCCACCTACAGAAGAGGCAGCAGCCAATAGGAGACGCCAGCACCTT				10q32.3	PREDICTED: Rattus norvegicus LOC360664 (predicted) (RGD1311078_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11120713-S	ILMN_263074	ARFIP1	NM_021763.1	NM_021763.1		60382	11120713	NM_021763.1	Arfip1	NP_068531.1	ILMN_1355238	0002340685	S	1237	AGAGTGAAGTAATGTGGGAGGTGTGAGGTGACCACCATCGTAGTGGCTCC	2	-	176275851-176275900	2q34	Rattus norvegicus ADP-ribosylation factor interacting protein 1 (Arfip1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50708] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50708] [evidence ISS]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646965-S	ILMN_66953	LOC500067	XM_580045.1	XM_580045.1		500067	62646965	XM_580045.1	LOC500067	XP_580045.1	ILMN_1350636	0005290044	S	1313	TGCAGTCTGGTGTGCATGCCATGTGATCAGGACAGCTTTTCCACCTCCCC					PREDICTED: Rattus norvegicus LOC500067 (LOC500067), mRNA.					
Rattus norvegicus	RefSeq	GI_62663070-I	ILMN_48897	USP19	XM_573962.1	XM_573962.1		361190	62663070	XM_573962.1	Usp19	XP_573962.1	ILMN_1375677	0003840138	S	6	AGAGGGCTGGTGGCGGCGGTCTCGCTCGGCTCTTGGTTCTTTGCTGAAGA					PREDICTED: Rattus norvegicus ubiquitin specific protease 19 (Usp19), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57528351-S	ILMN_281139	ATP5SL	NM_001009705.1	NM_001009705.1		361520	57528351	NM_001009705.1	Atp5sl	NP_001009705.1	ILMN_1352517	0002640021	S	1764	AAGGAACCACCAGAACCATCCTAGTGATAGCCTTGACTGGGCCCCGGCTT	1	+	80833680-80833729	1q21	Rattus norvegicus ATP5S-like (Atp5sl), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660414-S	ILMN_285601	LOC289606	XR_009140.1	XR_009140.1		289606	109500564	XR_009140.1	LOC289606		ILMN_1352358	0003710110	S	1213	AAGTGCAACTACTCCAGAACCAAACAAGAAGCCAGAGAACAAGCCAGCCG				14p11	PREDICTED: Rattus norvegicus similar to Gamma-aminobutyric-acid receptor alpha-2 subunit precursor (GABA(A) receptor) (LOC289606), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34864987	ILMN_271665	LOC365511	XM_001075949.1	XM_001075949.1		365511	109461382	XM_001075949.1	LOC365511	XP_001075949.1	ILMN_1649885	0005900138	S	1046	CTGTAAAGATGGAGAAGACAACACCCAGGAAGAGTCACCGGGCTGGGGGC					PREDICTED: Rattus norvegicus similar to zinc finger protein 296 (LOC365511), mRNA.					
Rattus norvegicus	RefSeq	GI_57863282-S	ILMN_262387	NANP	NM_001009409.1	NM_001009409.1		311530	57863282	NM_001009409.1	Nanp	NP_001009409.1	ILMN_1364242	0005550102	S	616	TGCAGGACTGAAAGCCACGGTCTGGATAAACAAGAGTGGAGGAGTGCCAC	3	-	141639837-141639886	3q41	Rattus norvegicus N-acetylneuraminic acid phosphatase (Nanp), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid [goid 46380] [evidence IDA]; The chemical reactions and pathways resulting in the formation of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid [goid 46380] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2-phosphoglycolate + H2O = glycolate + phosphate [goid 8967] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: N-acylneuraminate 9-phosphate + H2O = N-acylneuraminate + phosphate [goid 50124] [evidence IDA]; Catalysis of the reaction: N-acylneuraminate 9-phosphate + H2O = N-acylneuraminate + phosphate [goid 50124] [evidence ISS]	Hdhd4; RGD1306009; MGC105812	Hdhd4; RGD1306009; MGC105812
Rattus norvegicus	Unigene	Rn.7802	ILMN_160947	RN.7802	Rn.7802		Rn.7802		71679728	BC100083			ILMN_1530513	0000520315	S	1111	GCGTTGAGATGTTTTGCACTATTCTGAATTTTTGGTCTCTGTAAAAAATA					Rattus norvegicus cDNA clone					
Rattus norvegicus	RefSeq	GI_6978864-S	ILMN_291917	G6PC	NM_013098.1	NM_013098.1		25634	6978864	NM_013098.1	G6pc	NP_037230.1	ILMN_2039661	0001740392	S	1806	GCTGCTGGACCCTGTGGTGTACGGTGGGCAATTGTTTGCTGGTGCTTTTG				10q32.1	Rattus norvegicus glucose-6-phosphatase, catalytic (G6pc), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence TAS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The directed movement of glucose-6-phosphate into, out of, within or between cells. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15760] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence IEP]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; The chemical reactions and pathways involving urate, the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals [goid 46415] [evidence ISS]; The process of removing a phosphate group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate moiety attached to it [goid 46838] [evidence IDA]; The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 51156] [evidence IDA]; The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 51156] [evidence ISS]	Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence TAS]; Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence IDA]; Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence ISS]; Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence IDA]; Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence ISS]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence ISS]; Interacting selectively with phosphate [goid 42301] [evidence ISS]	MGC93613; G6PASE	MGC93613; G6PASE
Rattus norvegicus	RefSeq	GI_62666548-S	ILMN_264976	RGD1561661_PREDICTED	XM_228726.2	XM_228726.2		302536	62666548	XM_228726.2	RGD1561661_predicted	XP_228726.1	ILMN_1349011	0000870458	S	1052	GCTTACTCGAGGGAACCGGAGAAGCAGCAACCCCATGAAAGTCATCGTGG	X	+	24525519-24525568	Xq13	PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (predicted) (RGD1561661_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647816-A	ILMN_292682	NR2C2	NM_017323.1	NM_017323.1		50659	8394482	NM_017323.1	Nr2c2	NP_059019.1	ILMN_1376779	0006860047	S	1939	AGATCACCGGAGCCAGTCTATAGTGCACAGCCAACAGCTGCCAACAGTGG	4	+	126344231-126344242:126344243-126344280	4q34	Rattus norvegicus nuclear receptor subfamily 2, group C, member 2 (Nr2c2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The meiotic divisions undergone by the primary and secondary spermatocytes to produce a cyst of haploid spermatids [goid 48137] [evidence ISS]; The meiotic divisions undergone by the primary and secondary spermatocytes to produce a cyst of haploid spermatids [goid 48137] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tr4	Tr4
Rattus norvegicus	RefSeq	GI_62664605-S	ILMN_50136	LOC291530	XM_225849.3	XM_225849.3		291530	62664605	XM_225849.3	LOC291530	XP_225849.3	ILMN_1348898	0000610390	S	808	GACGTCATTCGGTGGGGACTGAACAGACCTGTGTTGCCCCTCGTGGAAAC				18q12.1	PREDICTED: Rattus norvegicus similar to CTCL tumor antigen se57-1 (LOC291530), mRNA.					
Rattus norvegicus	RefSeq	GI_50657375-S	ILMN_265651	RPP21	NM_001002831.1	NM_001002831.1		406230	50657375	NM_001002831.1	Rpp21	NP_001002831.1	ILMN_1351618	0004730095	S	286	GACATGCCAGCGAAGCCAGCGGTTCCTCAATGACCCCAAGCATCTCCTCT	20	+	2108387-2108436	20p12	Rattus norvegicus ribonuclease P 21 subunit (human) (Rpp21), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Flj22638	Flj22638
Rattus norvegicus	RefSeq	GI_62650962-S	ILMN_63128	LOC314258	XM_234327.3	XM_234327.3		314258	62650962	XM_234327.3	LOC314258	XP_234327.3	ILMN_1357891	0004070215	S	69	CCCTGGGGCTGGCAAGGAGACCCAGATGGCTTCCCTCGGACTGTGAGGCA				6q24	PREDICTED: Rattus norvegicus similar to adenylate kinase 2 (LOC314258), mRNA.					
Rattus norvegicus	RefSeq	GI_34013523-S	ILMN_267754	COX8C	NM_183055.1	NM_183055.1		360229	34013523	NM_183055.1	Cox8c	NP_898878.1	ILMN_1365282	0004730398	S	184	CAGCCACTCAGAAAGCCCACAAAACCAAGTCCTGACACCCACGGAATCGG	6	+	127161537-127161579:127162353-127162359	6q32	Rattus norvegicus cytochrome c oxidase, subunit 8C (Cox8c), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]	Cox8c; COXVIII-3	Cox8c; COXVIII-3
Rattus norvegicus	RefSeq	GI_25453405-S	ILMN_287673	CYP2C13	NM_138514.1	NM_138514.1		171521	25453405	NM_138514.1	Cyp2c13	NP_612523.1	ILMN_1353182	0003390576	S	1309	GGATGTGTTTGGGAGAGAGCCTGGCCCGCATGGAGCTGTTTCTATTCCTG	Un|NW_047854.1	+	126146-126195		Rattus norvegicus cytochrome P450 2c13 (Cyp2c13), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114253; Cyp2c38	MGC114253; Cyp2c38
Rattus norvegicus	RefSeq	GI_8394254-S	ILMN_273953	SEMA3A	NM_017310.1	NM_017310.1		29751	8394254	NM_017310.1	Sema3a	NP_059006.1	ILMN_1375188	0001050193	S	2173	CAAGTGTGGAAAAGGGACCGAAAACAACGCCGACAAAGGCCGGGGCACTC	4	-	17575208-17575257	4q12	Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A (Sema3a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IMP]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IMP]	Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon extension involved in axon guidance [goid 48843] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a lower concentration, in a concentration gradient of a specific chemical [goid 50919] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal [goid 45499] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_11024705-S	ILMN_303027	MCPT9	NM_019323.1	NM_019323.1		54272	11024705	NM_019323.1	Mcpt9	NP_062196.1	ILMN_1357128	0001410010	S	567	TGAGAGGAAGGCTACTGCTGGGGGAGACTCAGGGGGTCCATTTGTGTGCA	15	+	34544180-34544189:34544601-34544640	15p12	Rattus norvegicus mast cell protease 9 (Mcpt9), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656652-S	ILMN_61715	LOC287564	XM_237794.3	XM_237794.3		287564	62656652	XM_237794.3	LOC287564	XP_237794.3	ILMN_1369955	0001170239	S	5229	GGCAGAAGGAAGCTATTGCTCAAGCGCCTTGCCCATTTCCCCAGCCACAC				10q26	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC287564), mRNA.					
Rattus norvegicus	RefSeq	GI_62662277-S	ILMN_264812	RGD1564958_PREDICTED	XM_001066279.1	XM_001066279.1		290604	109503877	XM_001066279.1	RGD1564958_predicted	XP_001066279.1	ILMN_1354539	0005550592	S	385	TGTGGAGAAGGCTGGGACTCACCTGAAGGGTGGGGGCAAAAGGGTCTTCA				16p14	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1564958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664865-S	ILMN_265441	GPR114_PREDICTED	XM_001061414.1	XM_001061414.1		307645	109508414	XM_001061414.1	Gpr114_predicted	XP_001061414.1	ILMN_1364429	0003870673	S	1498	TCACAGAAGCGTTACTCGGACGCGGAAGCCAAGGCAGTGATGGAGGCAGT				19p13	PREDICTED: Rattus norvegicus G protein-coupled receptor 114 (predicted) (Gpr114_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577708-S	ILMN_294564	OLR634	NM_001000647.1	NM_001000647.1		404843	47577708	NM_001000647.1	Olr634	NP_001000647.1	ILMN_1353741	0002650400	S	410	GCAAGTGCCATGTCTTGATATTGGTCTCTTGGGTTGGTGGAGCTGCGCAC	3	+	72379678-72379727	3q24	Rattus norvegicus olfactory receptor 634 (Olr634), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr634	Olr634
Rattus norvegicus	RefSeq	GI_27720108-S	ILMN_55855	LOC300694	XM_236241.1	XM_236241.1		300694	27720108	XM_236241.1	LOC300694	XP_236241.1	ILMN_1351620	0002630279	S	447	GATGACAGCATCCCTGAAATTGTGCCCCGATGGGAGTTTGGAGACGCCTT					PREDICTED: Rattus norvegicus similar to Claudin-22 (LOC300694), mRNA.					
Rattus norvegicus	RefSeq	GI_62718149-S	ILMN_68199	LOC501300	XM_576713.1	XM_576713.1		501300	62718149	XM_576713.1	LOC501300	XP_576713.1	ILMN_1352504	0006420037	S	44	CTGAGCCCTCTGACAATGACTTACTCTGGGAGAGAAACATCATCCCCTGG					PREDICTED: Rattus norvegicus LOC501300 (LOC501300), mRNA.					
Rattus norvegicus	RefSeq	GI_6980951-A	ILMN_274843	GLRA2	NM_012568.2	NM_012568.2		24397	78126170	NM_012568.2	Glra2	NP_036700.1	ILMN_1376728	0007100280	S	2968	ACCCGTTGCCTTTTCGGTATCAGAGCTACGTGGTTTGAATCCTGGCTACA	X	+	49978018-49978067	Xq21	Rattus norvegicus glycine receptor, alpha 2 (Glra2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence IEP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence TAS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence ISS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	RNNEOGLY	RNNEOGLY
Rattus norvegicus	RefSeq	GI_62638750-S	ILMN_262764	LOC689299	XM_001070335.1	XM_001070335.1		689299	109457877	XM_001070335.1	LOC689299	XP_001070335.1	ILMN_1372333	0006110059	S	1465	CAAGCTCTCCAGGGGGATGGCTGCACAGCCCAGGCACAGCAAGTGAGTCA	1	+	52338521-52338570	1q12	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC689299), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659012-S	ILMN_263517	GLTP_PREDICTED	XM_001080376.1	XM_001080376.1		288707	109497488	XM_001080376.1	Gltp_predicted	XP_001080376.1	ILMN_1369554	0006980400	S	1764	AGCTGCGGAGACCCAAGAAACTGCCTTGCTGCCTTAAACCGTCCTTCAGG				12q16	PREDICTED: Rattus norvegicus glycolipid transfer protein (predicted) (Gltp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605825-S	ILMN_265351	MAP2K1IP1	NM_001008375.1	NM_001008375.1		362045	56605825	NM_001008375.1	Map2k1ip1	NP_001008376.1	ILMN_1350468	0006350446	S	965	TCGCTAACGCCCCTCTGCTCTCAGTGCGGTGAGTGTTACTAATGGACTCG	2	+	235420943-235420992	2q44	Rattus norvegicus mitogen-activated protein kinase kinase 1 interacting protein 1 (Map2k1ip1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Increases the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19209] [evidence IEA]	MGC106009; MP1	MGC106009; MP1
Rattus norvegicus	RefSeq	GI_52345444-S	ILMN_278955	PXMP4	NM_172223.2	NM_172223.2		282634	52345444	NM_172223.2	Pxmp4	NP_757377.1	ILMN_1353260	0001450070	S	1147	TCCGGACGGAACCCTACTGTCCAATGGGAACGAAACATGAGCCATTCGAT	3	-	145061279-145061328	3q41	Rattus norvegicus peroxisomal membrane protein 4 (Pxmp4), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_16758457-S	ILMN_264680	ASAH2	NM_053646.1	NM_053646.1		114104	16758457	NM_053646.1	Asah2	NP_446098.1	ILMN_1363356	0006350500	S	2109	CGAGGACTCTGTAGCCAACTGGCAGATAATGCATAACGATGCCTCCTGGG	1	-	236004166-236004215	1q52	Rattus norvegicus N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (Asah2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: N-acylsphingosine + H2O = a fatty acid + sphingosine [goid 17040] [evidence ISS]; Catalysis of the reaction: N-acylsphingosine + H2O = a fatty acid + sphingosine [goid 17040] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664558-S	ILMN_64309	GNAL	XM_341626.3	XM_341626.3		24611	109506679	XM_341626.3	Gnal	XP_341627.2	ILMN_1369381	0005690097	S	1347	GCCAAGTTCTTTATCCGGGATCTGTTCTTGAGGATCAGCACAGCCACGGG	18	+	63732754-63732783:63735657-63735676	18q12.1	PREDICTED: Rattus norvegicus guanine nucleotide binding protein, alpha stimulating, olfactory type (Gnal), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence TAS]	Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_58219531-S	ILMN_276490	RAGE	NM_001010965.1	NM_001010965.1		362787	58219531	NM_001010965.1	Rage	NP_001010965.1	ILMN_1368862	0005290671	S	1319	ACCTCACCTGAAACACTGTCACCTGCCCACGATCAACAGGAAAGGGGGAG	6	-	135531908-135531957	6q32	Rattus norvegicus renal tumor antigen (Rage), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94988	MGC94988
Rattus norvegicus	RefSeq	GI_16758241-S	ILMN_274954	LOC681932	XR_007712.1	XR_007712.1		681932	109500197	XR_007712.1	LOC681932		ILMN_1371709	0000360056	S	1676	GGAGCTCCCGGGACCTTTAACTTCTAATGTCCAGCCAAAGCACAAAGTTG					PREDICTED: Rattus norvegicus similar to karyopherin (importin) alpha 2 (LOC681932), mRNA.					
Rattus norvegicus	RefSeq	GI_26024190-S	ILMN_278216	INSL3	NM_053680.1	NM_053680.1		114215	26024190	NM_053680.1	Insl3	NP_446132.1	ILMN_1362150	0005050017	S	361	GACCTTTTGGGTCTGTGTCCCCACTGAAGGATTGTAGGGCTCAGGTGGTG	16	+	18891241-18891267:18891268-18891290	16p14	Rattus norvegicus insulin-like 3 (Insl3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence IDA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The process whose specific outcome is the progression of the gonad over time, from its formation to the mature structure. The gonad is an animal organ that produces gametes; in some species it also produces hormones [goid 8406] [evidence TAS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IDA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IPI]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Rlf	Rlf
Rattus norvegicus	RefSeq	GI_13592120-S	ILMN_299074	TPP2	NM_031137.1	NM_031137.1		81815	13592120	NM_031137.1	Tpp2	NP_112399.1	ILMN_1373577	0005080546	S	4022	CCCCAACCTGGGTGGATGCAGCTGCTCACTGCAGGAGAGGTTTTCATCTC	9	+	43065653-43065702	9q22	Rattus norvegicus tripeptidyl peptidase II (Tpp2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the release of an N-terminal tripeptide from a polypeptide [goid 8240] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62652601-S	ILMN_54451	LY6H_PREDICTED	XM_235426.4	XM_235426.4		300025	109480903	XM_235426.4	Ly6h_predicted	XP_235426.4	ILMN_1352003	0005910142	S	438	CAATTCCAGCCATTGCGCCCCGAAGCAGTGCCAGCCCACTGATACCGTTT	7	-	113511295-113511344	7q34	PREDICTED: Rattus norvegicus lymphocyte antigen 6 complex, locus H (predicted) (Ly6h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663865-S	ILMN_289868	RGD1566175_PREDICTED	XM_577594.1	XM_577594.1		502142	62663865	XM_577594.1	RGD1566175_predicted	XP_577594.1	ILMN_1355368	0000840020	S	258	TATTGGGGTCACACTATTCAAGTGCTCGAAGGAGGTACAGTCCAAGGGCC	17	+	72069974-72070023	17q12.1	PREDICTED: Rattus norvegicus similar to ribosomal protein Rps2 (predicted) (RGD1566175_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40786490-S	ILMN_300662	CYP20A1	NM_199401.1	NM_199401.1		316435	40786490	NM_199401.1	Cyp20a1	NP_955433.1	ILMN_1372405	0002470164	S	1670	ATTGGGGGGCAATGGCTTTTGAGACGGGGTTTCTCTGTATAGCCCTGGCT	9	+	58972972-58973021	9q31	Rattus norvegicus cytochrome P450, family 20, subfamily A, polypeptide 1 (Cyp20a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665001	ILMN_49388	HOOK2_PREDICTED	XM_239718.3	XM_239718.3		304669	62665001	XM_239718.3	Hook2_predicted	XP_239718.3	ILMN_1650749	0006290242	S	1876	ATCAGTGCCTGGTACAGCATGGGTGAGTGGGTTCCTCCTTGGCTGAGGTC				19q11	PREDICTED: Rattus norvegicus hook homolog 2 (Drosophila) (predicted) (Hook2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642053-S	ILMN_48935	FOXD4	XM_574644.1	XM_574644.1		252886	62642053	XM_574644.1	Foxd4	XP_574644.1	ILMN_1355829	0000580215	S	5136	GACCTCAGCTCCTTTGTGTCTCTTGCGGCTTTGCAATTCGAGCAGTTGTC				1q51	PREDICTED: Rattus norvegicus forkhead box D4 (Foxd4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34859029-S	ILMN_67744	COMMD7_PREDICTED	XM_215896.2	XM_215896.2		296285	34859029	XM_215896.2	Commd7_predicted	XP_215896.2	ILMN_1350253	0007000170	S	1485	TTCACCAAAAGTTAGAGGTCAGCCAGGGCAGCAAAGTGACAGCCTGCCTC				3q41	PREDICTED: Rattus norvegicus COMM domain containing 7 (predicted) (Commd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663176-S	ILMN_67275	LOC498696	XM_573981.1	XM_573981.1		498696	62663176	XM_573981.1	LOC498696	XP_573981.1	ILMN_1373286	0000520671	S	4019	GCAGACTTGAAAGGTCCGCATTTACTTGTAGCTGAGACGGGCTTCCCAGG				17p14	PREDICTED: Rattus norvegicus similar to heterogeneous nuclear ribonucleoprotein A0 (LOC498696), mRNA.					
Rattus norvegicus	RefSeq	GI_62651863	ILMN_265829	LOC362852	XM_001059703.1	XM_001059703.1		362852	109476275	XM_001059703.1	LOC362852	XP_001059703.1	ILMN_1650551	0006200091	S	2020	GTGTTGGTTGATGGCTCTGATGGGGAAGAATGAGGACTGCTGGTGGCCGC					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2R 2 (LOC362852), mRNA.					
Rattus norvegicus	RefSeq	GI_62648817-S	ILMN_265829	LOC362852	XM_001059703.1	XM_001059703.1		362852	109476275	XM_001059703.1	LOC362852	XP_001059703.1	ILMN_1353814	0006840132	S	1677	TGTTCAGCCCCGTGGTGGTGAGTTTTGTTTCTTTCCCTTCCTAAGGCTGG					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2R 2 (LOC362852), mRNA.					
Rattus norvegicus	RefSeq	GI_62646683-S	ILMN_267933	LOC499980	NM_001025044.1	NM_001025044.1		499980	68163516	NM_001025044.1	LOC499980	NP_001020215.1	ILMN_1365511	0001450315	S	2998	CCGAGCCTGGAGCCAACAGGAGGCACATCAGGAAACCCATCATAAAGCCT	4	+	9304825-9304850	4q11	Rattus norvegicus hypothetical protein LOC499980 (LOC499980), mRNA.					
Rattus norvegicus	RefSeq	GI_29789095-S	ILMN_289748	PRKAR2A	NM_019264.1	NM_019264.1		29699	29789095	NM_019264.1	Prkar2a	NP_062137.1	ILMN_1357333	0004010035	S	1364	CCAGTCAGCCACAAGAACACACCCAGAAAACAGACACGACAGAACTGCGC	8	+	113805297-113805346	8q32	Rattus norvegicus protein kinase, cAMP dependent regulatory, type II alpha (Prkar2a), mRNA.	An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47777727-S	ILMN_282646	OLR1540	NM_001001383.1	NM_001001383.1		363762	47777727	NM_001001383.1	Olr1540	NP_001001383.1	ILMN_1366685	0002060133	S	215	GGTTATCAACCACGGTGACACCAAAGATGCTCCTCGCCATCATAGCTAAG	11	+	42031241-42031290	11q12	Rattus norvegicus olfactory receptor 1540 (Olr1540), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1540	Olr1540
Rattus norvegicus	RefSeq	GI_27670379-S	ILMN_274297	RGD1562489_PREDICTED	XM_220370.1	XM_220370.1		287250	27670379	XM_220370.1	RGD1562489_predicted	XP_220370.1	ILMN_1361028	0006770095	S	192	AGTGATAGCATGCGCAGAGGCCACCATGGCCCTCGTGAAGCCTCAGGCCA	10	+	35270979-35271028	10q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1562489_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649272-S	ILMN_66505	LOC500509	XM_575871.1	XM_575871.1		500509	62649272	XM_575871.1	LOC500509	XP_575871.1	ILMN_1374884	0005890273	S	1802	CTCTGATGTCGTTTCTCCGGCAGGCACCCATAACCCACTGGATACTCCCC					PREDICTED: Rattus norvegicus similar to channel-interacting PDZ domain protein isoform 1 (LOC500509), mRNA.					
Rattus norvegicus	RefSeq	GI_62665474-S	ILMN_50477	LOC502204	XM_577664.1	XM_577664.1		502204	62665474	XM_577664.1	LOC502204	XP_577664.1	ILMN_1362464	0006840500	S	254	CCAGTGTGACAGAGAGAACCAGTGTGATGGACAGAACCAGTGTGACAGAG					PREDICTED: Rattus norvegicus similar to retinitis pigmentosa GTPase regulator (LOC502204), mRNA.					
Rattus norvegicus	RefSeq	GI_62639550-S	ILMN_302371	KLK4	NM_001004101.1	NM_001004101.1		408210	51871598	NM_001004101.1	Klk4	NP_001004101.1	ILMN_2040219	0000460564	S	651	ATCCCTACAAGGGCTCGTGTCTATGGGACAAGGAGAATGCGGGCAGCCTG	1	+	94327368-94327417	1q22	Rattus norvegicus kallikrein-related peptidase 4 (Klk4), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence TAS]	Emsp1	Emsp1
Rattus norvegicus	RefSeq	GI_51871598-S	ILMN_302371	KLK4	NM_001004101.1	NM_001004101.1		408210	51871598	NM_001004101.1	Klk4	NP_001004101.1	ILMN_1370608	0001580292	S	487	CTGCCCAGCCTCCTGCAGTGTGTGAATCTCTCGGTAGCATCTGAGGAGAC	1	+	94324537-94324586	1q22	Rattus norvegicus kallikrein-related peptidase 4 (Klk4), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence TAS]	Emsp1	Emsp1
Rattus norvegicus	RefSeq	GI_62639198-I	ILMN_65829	ADCK4_PREDICTED	XM_574399.1	XM_574399.1		308453	62639198	XM_574399.1	Adck4_predicted	XP_574399.1	ILMN_1375391	0006520100	S	142	GAAGGTGGGGAGCTTTCAAACATGGGCGCAAAACAGGAGGCCCAGTCCTG				1q21	PREDICTED: Rattus norvegicus aarF domain containing kinase 4 (predicted) (Adck4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658483-S	ILMN_270089	RGD1562875_PREDICTED	XM_001072631.1	XM_001072631.1		288489	109496621	XM_001072631.1	RGD1562875_predicted	XP_001072631.1	ILMN_1365219	0007050541	S	2051	GTGGCAAAGTGTTCTCTCGGATGTCGAACCTCACCGTCCACTACCGAAGC				12p11	PREDICTED: Rattus norvegicus similar to RB-associated KRAB repressor (predicted) (RGD1562875_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981177-S	ILMN_299275	MAL	NM_012798.1	NM_012798.1		25263	6981177	NM_012798.1	Mal	NP_036930.1	ILMN_1366275	0001820138	S	1871	CCCAGCCATACTGGTACCCAAATCTGCCATTTGCCCCACTTAACACAGTC	3	-	115167022-115167071	3q36	Rattus norvegicus mal, T-cell differentiation protein (Mal), mRNA.	Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence TAS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IDA]	The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence IDA]; The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence ISS]	MALGENE	MALGENE
Rattus norvegicus	RefSeq	GI_51948491-S	ILMN_274933	NUDT19	NM_001004258.1	NM_001004258.1		308518	51948491	NM_001004258.1	Nudt19	NP_001004258.1	ILMN_1353223	0002570369	S	1059	CGTCAAAGAGCGAGCACGGGTACCCAAAGAGCTACACAGCGAAGAAGAGC	1	-	88081137-88081186	1q21	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 19 (Nudt19), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]		Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	MGC94056	MGC94056
Rattus norvegicus	RefSeq	GI_62657768-S	ILMN_69959	RGD1305628_PREDICTED	XM_213639.4	XM_213639.4		288204	109493031	XM_213639.4	RGD1305628_predicted	XP_213639.4	ILMN_1375063	0002350068	S	8871	CAGTGACACATGTCTTGATGTGATTGGAGGCCGGGACACTCCAGGAGCCA	11	+	41624083-41624132	11q12	PREDICTED: Rattus norvegicus similar to Hypothetical protein 5031404N19 (predicted) (RGD1305628_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641859-S	ILMN_278666	LOC367047	XR_007435.1	XR_007435.1		367047	109484445	XR_007435.1	LOC367047		ILMN_1351180	0000360086	S	830	CTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAGTACCTTT				8q13	PREDICTED: Rattus norvegicus similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) (LOC367047), mRNA.					
Rattus norvegicus	RefSeq	GI_53850629-S	ILMN_294933	MGC95208	NM_001005552.1	NM_001005552.1		304176	53850629	NM_001005552.1	MGC95208	NP_001005552.1	ILMN_1349128	0006290601	S	1094	GCCTACCCCTCTAAAGCATTGAACACTGTACCACAGCCTGAAGAAGCTGC	11	-	2100369-2100397:2100398-2100418	11p12	Rattus norvegicus similar to 4930453N24Rik protein (MGC95208), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649836-S	ILMN_50017	TMEM50A_PREDICTED	XM_216545.4	XM_216545.4		298552	109475651	XM_216545.4	Tmem50a_predicted	XP_216545.1	ILMN_1353162	0000050450	S	930	CGCTCTGGGGTCCAAAGTGTTTACTAACTCGGCGTCTCCCGTGTCTGGTG	5	-	153674538-153674587	5q36	PREDICTED: Rattus norvegicus transmembrane protein 50A (predicted) (Tmem50a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865413-A	ILMN_266590	ANXA11	NM_001011918.1	NM_001011918.1		290527	58865413	NM_001011918.1	Anxa11	NP_001011918.1	ILMN_1376793	0000130037	S	1990	GTTTCTGGAGAGAATGGTAGGTGAGCGGGCCACCCGTCTTTGCCTAGGAC	16	+	1495754-1495803	16p16	Rattus norvegicus annexin A11 (Anxa11), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence ISS]; Interacting selectively with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine [goid 8429] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664915-S	ILMN_68076	LOC291905	XM_214652.3	XM_214652.3		291905	62664915	XM_214652.3	LOC291905	XP_214652.3	ILMN_1374437	0000870021	S	4665	CCAGACCTGCTCGCCCACACCCTGTAGTAGAAAGCGGTAGCTTCGAGTCT				19p11	PREDICTED: Rattus norvegicus similar to fatso (predicted) (LOC291905), mRNA.					
Rattus norvegicus	RefSeq	GI_62655338-S	ILMN_299429	RGD1565945_PREDICTED	XR_008065.1	XR_008065.1		301573	109487429	XR_008065.1	RGD1565945_predicted		ILMN_1356647	0005910139	S	397	CCACTGGCTCAGCGACAGAATTCCAGTTTAGAGGGGGCTTCTGTTGACAG				9q35	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1565945_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20806146-S	ILMN_292687	CD48	NM_139103.1	NM_139103.1		245962	20806146	NM_139103.1	Cd48	NP_620803.1	ILMN_1361192	0001090435	S	707	GCTTGGCTAGTGGTCACGTTATCCATCATTCCCAGCATCCTGCTAGCCTG	13	+	87707376-87707425	13q24	Rattus norvegicus Cd48 molecule (Cd48), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]	Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IPI]; Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_8394495-S	ILMN_274059	TYRO3	NM_017092.1	NM_017092.1		25232	8394495	NM_017092.1	Tyro3	NP_058788.1	ILMN_1358278	0002970292	S	3424	GTCTGTCTGAGCATGCTACCAAGCCCCCAAACATCCCAGAACTAACAGGC	3	+	106328304-106328353	3q35	Rattus norvegicus TYRO3 protein tyrosine kinase (Tyro3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IPI]	Brt	Brt
Rattus norvegicus	RefSeq	GI_62661532-S	ILMN_270854	RGD1305133	XM_001062459.1	XM_001062459.1		290270	109502498	XM_001062459.1	RGD1305133	XP_001062459.1	ILMN_1373279	0004280102	S	2452	AGATGTCATTGCTCGGCTTTGTGGACCATGCAGTGTGCAAGCCGTGGTGC				15p12	PREDICTED: Rattus norvegicus similar to Ab2-008 (RGD1305133), mRNA.					
Rattus norvegicus	RefSeq	GI_34861095-S	ILMN_66589	NTSR1_PREDICTED	XM_345484.2	XM_345484.2		366274	109469355	XM_345484.2	Ntsr1_predicted	XP_345485.1	ILMN_1353446	0003440433	S	1031	CGACGCCTGATGTTCTGCTATATCTCGGATGAACAGTGGACTACGTTCCT	3	+	169629600-169629643:169630676-169630681	3q43	PREDICTED: Rattus norvegicus neurotensin receptor 1 (predicted) (Ntsr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138591-S	ILMN_272588	CASP3	NM_012922.2	NM_012922.2		25402	52138591	NM_012922.2	Casp3	NP_037054.1	ILMN_1349218	0006040687	S	2094	ACGGGACTTGGAAAGCATCCAGCAATAGGCCCTGCAGCCCATGTGGAGGA	16	-	48944544-48944593	16q11	Rattus norvegicus caspase 3, apoptosis related cysteine protease (Casp3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IMP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1782] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IMP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP];  [goid 8625] [evidence ISS]; The activation, by oxidative stress, of any of the steps required for cell death by apoptosis [goid 8631] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The breakdown of the nucleus into small membrane-bounded compartments, or blebs, each of which contain compacted DNA [goid 30264] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of activated T cell proliferation [goid 46007] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IDA]; Increases the activity of the enzyme phospholipase A2 [goid 16005] [evidence IMP]	MGC93645; Lice	MGC93645; Lice
Rattus norvegicus	RefSeq	GI_62665902	ILMN_278379	RGD1559903_PREDICTED	XM_577897.1	XM_577897.1		502418	62665902	XM_577897.1	RGD1559903_predicted	XP_577897.1	ILMN_1651028	0001500577	S	28	GGCCGGTTGGGCTCCAGATCCATAAAGCTCCCAGGAGGAGAATCGAGTAA	20	+	17281138-17281187	20p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700049L16 (predicted) (RGD1559903_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650656-S	ILMN_47828	RGD1559629_PREDICTED	XM_576027.2	XM_576027.2		366614	109478191	XM_576027.2	RGD1559629_predicted	XP_576027.1	ILMN_1353087	0003130463	S	111	GACGTCTTTCTGCAGCAGCCTACATCTCCAGGTGGCCAGACAAGAATTTC	6	+	69197281-69197330	6q22	PREDICTED: Rattus norvegicus similar to H+ ATP synthase (predicted) (RGD1559629_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560104-S	ILMN_280637	GLRX1	NM_022278.1	NM_022278.1		64045	11560104	NM_022278.1	Glrx1	NP_071614.1	ILMN_1356369	0005720433	S	930	GAGCAGATGGTGCGTTCAGCTCTGTTCGTAAAGGTGATTAATTGCCCAGA	2	+	2898900-2898949	2q11	Rattus norvegicus glutaredoxin 1 (thioltransferase) (Glrx1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	glutaredoxin; Grx; Glrx	glutaredoxin; Grx; Glrx
Rattus norvegicus	RefSeq	GI_62653613-S	ILMN_293927	RGD1562173_PREDICTED	XM_001064960.1	XM_001064960.1		500989	109484619	XM_001064960.1	RGD1562173_predicted	XP_001064960.1	ILMN_1359313	0002480458	S	1342	TGTATGCACCTGAAGATGACCCGGAGATGAAGGTAGAGCGGTACAAGCGC				8q23	PREDICTED: Rattus norvegicus similar to zinc finger protein (predicted) (RGD1562173_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642677-S	ILMN_55743	LOC294603	XM_226616.3	XM_226616.3		294603	62642677	XM_226616.3	LOC294603	XP_226616.3	ILMN_1367257	0002190471	S	1544	CTCGAGTCGGTCTATCTGCTATACACCTGAGATAGCTAACCGCAGACGTG				2q11	PREDICTED: Rattus norvegicus similar to KIAA0825 protein (LOC294603), mRNA.					
Rattus norvegicus	RefSeq	GI_62657548-S	ILMN_272699	RGD1561853_PREDICTED	XM_001064143.1	XM_001064143.1		288346	109493762	XM_001064143.1	RGD1561853_predicted	XP_001064143.1	ILMN_1370493	0002690059	S	950	CCATGGCAAAGGCAGGGGTGTGATTGCTACCAAGCGATTCTCCCGAGGAG				11p12	PREDICTED: Rattus norvegicus similar to SET domain-containing protein (predicted) (RGD1561853_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650475-A	ILMN_286643	NT5C1B	NM_001011982.1	NM_001011982.1		298881	58865539	NM_001011982.1	Nt5c1b	NP_001011982.1	ILMN_1376297	0002650465	S	1543	CGATTGCTCTGTCCCATCAGGACCTACCTTGTTACAGCTCGGAGTGCGGC	6	+	33867329-33867378	6q14	Rattus norvegicus 5'-nucleotidase, cytosolic IB (Nt5c1b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence ISS]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence IEA]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence ISS]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62649575-S	ILMN_301459	SMAP1L	XM_001053545.1	XM_001053545.1		298500	109477147	XM_001053545.1	Smap1l	XP_001053545.1	ILMN_1350057	0006040390	S	2708	AGGCAGAGGGCCTGGACAGCTTTCTCTCGGCCGTTGTTCACTCCACTTGA				5q36	PREDICTED: Rattus norvegicus stromal membrane-associated protein 1-like (Smap1l), mRNA.					
Rattus norvegicus	RefSeq	GI_27707001-S	ILMN_296778	RGD1565662_PREDICTED	XM_001063539.1	XM_001063539.1		302441	109511927	XM_001063539.1	RGD1565662_predicted	XP_001063539.1	ILMN_1367366	0000840402	S	1219	GTGGATATCAGGGACGTCAGGGCTCATCGCAGAGTCCATAGAACCTCTTC				Xq22	PREDICTED: Rattus norvegicus similar to Smage-3 protein (predicted) (RGD1565662_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.3545	ILMN_161250	LOC498545	Rn.3545		Rn.3545		62661738	XM_573819	LOC498545		ILMN_1530455	0005270133	S	6024	TAGCTATCGACAACAAAATAGAGCAAGCTATGGTATGTACTGATTTAAAA					PREDICTED: Rattus norvegicus similar to Transforming growth factor beta 1 induced transcript 4, isoform 1 (LOC498545),					
Rattus norvegicus	RefSeq	GI_62649021-S	ILMN_53131	LOC500468	XM_575831.1	XM_575831.1		500468	62649021	XM_575831.1	LOC500468	XP_575831.1	ILMN_1351355	0002230131	S	1227	GTCGGACACCACAGAACCCTCATCCCCAGAAGACAAGGAAGAGAGCCTGG					PREDICTED: Rattus norvegicus similar to paralemmin 2 (LOC500468), mRNA.					
Rattus norvegicus	RefSeq	GI_62649475	ILMN_53568	ZSWIM5_PREDICTED	XM_233421.3	XM_233421.3		313524	109475352	XM_233421.3	Zswim5_predicted	XP_233421.3	ILMN_1649871	0003610142	S	6002	CGTGGCTACTAATGTGTTACTGTCCAGCCAAGGGCCCACACTGTCTCAGC	5	+	137295320-137295369	5q36	PREDICTED: Rattus norvegicus zinc finger, SWIM domain containing 5 (predicted) (Zswim5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394306-S	ILMN_269741	SLC3A1	NM_017216.1	NM_017216.1		29484	8394306	NM_017216.1	Slc3a1	NP_058912.1	ILMN_1355705	0003830035	S	2114	CCTGCGTCTGGTATGCTTGCCATCACACATGCAAGGGCCTCAGGAATGGC	6	+	8419316-8419365	6q12	Rattus norvegicus solute carrier family 3, member 1 (Slc3a1), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell [goid 5774] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IDA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62641897-S	ILMN_295413	MS4A11_PREDICTED	XM_001075502.1	XM_001075502.1		361735	109463594	XM_001075502.1	Ms4a11_predicted	XP_001075502.1	ILMN_1356010	0005900100	S	1126	GCTGCAGGAGGTACTAGTTAGTGCCTGAGATCTTAATCCGTGCATGTGGC				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 11 (predicted) (Ms4a11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392989-S	ILMN_290931	BMP2	NM_017178.1	NM_017178.1		29373	8392989	NM_017178.1	Bmp2	NP_058874.1	ILMN_1356614	0002760673	S	967	CTTCAGTGATGTGGGGTGGAATGACTGGATCGTGGCCCCTCCAGGCTATC	3	+	121380939-121380988	3q36	Rattus norvegicus bone morphogenetic protein 2 (Bmp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence IEA]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IDA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes [goid 32582] [evidence IEA]; Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes [goid 32582] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual [goid 35051] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual [goid 35051] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of astrocyte differentiation [goid 48711] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of astrocyte differentiation [goid 48711] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IMP]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IEA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_16758659-S	ILMN_289978	CALCR	NM_001034015.1	NM_001034015.1		116506	77404381	NM_001034015.1	Calcr	NP_001029187.1	ILMN_1362774	0002230273	S	1453	CGCGACTATCTACTGCTTCTGTAACCATGAGGTGCAAGTGACCCTGAAGC	4	-	28488093-28488112:28491870-28491899	4q13	Rattus norvegicus calcitonin receptor (Calcr), transcript variant 2, mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Any constituent part of a microtubule-based flagellum, a long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 44442] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence IEA]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of adenylate cyclase activity [goid 45762] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with calcitonin to initiate a change in cell activity [goid 4948] [evidence IDA]; Combining with calcitonin to initiate a change in cell activity [goid 4948] [evidence IEA]; Interacting selectively with calcitonin, a peptide hormone responsible for reducing serum calcium levels by inhibiting osteoclastic bone reabsorption and promoting renal calcium excretion. It is synthesized and released by the C cells of the thyroid [goid 32841] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with calcitonin to initiate a change in cell activity [goid 4948] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649179-S	ILMN_61518	LOC500490	XM_575855.1	XM_575855.1		500490	62649179	XM_575855.1	LOC500490	XP_575855.1	ILMN_1354725	0006620132	S	630	CTGCCTGAGGATCCAGCTATACCTCTCTGCGCATATACCCAAAAGATGCC					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC500490), mRNA.					
Rattus norvegicus	RefSeq	GI_62648845-S	ILMN_268616	DNAJB5_PREDICTED	XM_001061825.1	XM_001061825.1		313811	109476309	XM_001061825.1	Dnajb5_predicted	XP_001061825.1	ILMN_1357975	0001990279	S	2708	CTCAGGGCCTAGCCACCCCAAACTTCCAAGCCCCACTTTTGCGATATGTG				5q22	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 5 (predicted) (Dnajb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662246-S	ILMN_57874	LOC364514	XM_573861.1	XM_573861.1		364514	62662246	XM_573861.1	LOC364514	XP_573861.1	ILMN_1356522	0000940070	S	2277	GGAGCAGTTGCAGCCTGATACATTAGTCCATGCAGTGCTCAGAGTAGTGA				16p16	PREDICTED: Rattus norvegicus similar to family with sequence similarity 35, member A (LOC364514), mRNA.					
Rattus norvegicus	RefSeq	GI_48040530-A	ILMN_264415	RNF114	NM_001001517.1	NM_001001517.1		362277	48040530	NM_001001517.1	Rnf114	NP_001001517.1	ILMN_1376942	0004280446	S	1953	GGAGGGAGGTTTGGTGAGACCTTGCCCTGAGGAACTGAGAAAAGCACAGC	3	+	158662238-158662287	3q42	Rattus norvegicus ring finger protein 114 (Rnf114), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Znf313; MGC112560	Znf313; MGC112560
Rattus norvegicus	RefSeq	GI_62654850-S	ILMN_301324	LOC680128	XM_001055834.1	XM_001055834.1		680128	109485663	XM_001055834.1	LOC680128	XP_001055834.1	ILMN_1358813	0002120088	S	353	GTGGACTGAACAAACCAGGCACCGAAAACTCAGAGGCCCAGAAGCCACGC	9	-	4687947-4687996	9q11	PREDICTED: Rattus norvegicus similar to phospholipase C-like 2 (LOC680128), mRNA.					
Rattus norvegicus	RefSeq	GI_32996724-S	ILMN_302871	RNASEL	NM_182673.1	NM_182673.1		359726	32996724	NM_182673.1	Rnasel	NP_872614.1	ILMN_1357295	0006350551	S	2171	ATTCAGAAAACACTTTCCTCAGCCTCCACCAAGCCTCAGCGTGCCAGAGG	13	+	68828946-68828995	13q21	Rattus norvegicus ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) (Rnasel), mRNA.	The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IDA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IDA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester [goid 15936] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP+ = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H+ [goid 4420] [evidence IEA]; Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA [goid 4540] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters [goid 16891] [evidence IEA]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IDA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660581-S	ILMN_266357	LGI2_PREDICTED	XM_001056168.1	XM_001056168.1		305417	109500679	XM_001056168.1	Lgi2_predicted	XP_001056168.1	ILMN_1370345	0001410735	S	1753	AACACCCTGTACCTTTCCCTCACGCGGTTCATCGGGGACTCTCGGGTCAT				14q11	PREDICTED: Rattus norvegicus leucine-rich repeat LGI family, member 2 (predicted) (Lgi2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654657-S	ILMN_68728	TREM1_PREDICTED	XM_217336.4	XM_217336.4		301229	109485730	XM_217336.4	Trem1_predicted	XP_217336.3	ILMN_1357948	0006100037	S	874	GCACCCTCAGGAAAGAGGAACCAATTCCTAGAACACTCTGGTCTTTCCCC	9	-	8175125-8175174	9q12	PREDICTED: Rattus norvegicus triggering receptor expressed on myeloid cells 1 (predicted) (Trem1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27681640-S	ILMN_68728	TREM1_PREDICTED	XM_217336.4	XM_217336.4		301229	109485730	XM_217336.4	Trem1_predicted	XP_217336.3	ILMN_2040035	0005220543	S	451	CCGACTGAGGTTCCCGTCCTCATTACCACAAAACACTCAACTCCAACCCG	9	-	8181549-8181598	9q12	PREDICTED: Rattus norvegicus triggering receptor expressed on myeloid cells 1 (predicted) (Trem1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652503-S	ILMN_49521	RGD1305976_PREDICTED	XM_343253.3	XM_343253.3		362923	109480751	XM_343253.3	RGD1305976_predicted	XP_343254.2	ILMN_1361911	0000630528	S	4819	CAGGAATCACATTTGGGCGCGTGTGCAAGCTATGCTGTAGCTAGTTCAGG	7	+	103227614-103227663	7q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C920006C10 (predicted) (RGD1305976_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658300-S	ILMN_63666	LOC290999	XM_214433.2	XM_214433.2		290999	62658300	XM_214433.2	LOC290999	XP_214433.2	ILMN_1368345	0006350427	S	519	CCAGATCCCTTTCTGTTGGGTTGCATGCTTCTACTTTGTGGCGTGTCCCC				17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010110M21 (predicted) (LOC290999), mRNA.					
Rattus norvegicus	RefSeq	GI_34935301-S	ILMN_161857	LOC362797	XM_343123.1	XM_343123.1			34935301	XM_343123.1	LOC362797		ILMN_2040076	0003180647	S	486	AGACCAGCAGGGGGCACAAGGAGCACAGAAAGCATCCAGTTGCTGAGTGT					Rattus norvegicus similar to immunoglobulin 4G6 heavy chain variable region (LOC362797), mRNA.					
Rattus norvegicus	RefSeq	GI_16758233-S	ILMN_64165	POLA2	NM_053480.2	NM_053480.2		85242	67514565	NM_053480.2	Pola2	NP_445932.2	ILMN_1357198	0002060035	S	1787	CGGCTGTGTCTGTATGAATCCTGGACGGCTCACCAAAGGACAAGTGGGCG	1	-	208573583-208573632	1q43	Rattus norvegicus polymerase (DNA directed), alpha 2 (Pola2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence TAS]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence ISS]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence TAS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660679-S	ILMN_277228	LOC501925	XM_001062303.1	XM_001062303.1		501925	109500799	XM_001062303.1	LOC501925	XP_001062303.1	ILMN_1354792	0002340056	S	1293	AGGGCTCCTTTTCCCCTTCATCCAGAAAAGCCTGGAGTCCTACTGCTTCC				14q21	PREDICTED: Rattus norvegicus similar to solute carrier family 2, member 9 isoform a (LOC501925), mRNA.					
Rattus norvegicus	RefSeq	GI_62717811-S	ILMN_49431	LOC501229	XM_580176.1	XM_580176.1		501229	62717811	XM_580176.1	LOC501229	XP_580176.1	ILMN_1354890	0004150377	S	633	CAGGGCCATGGGCTGATCAGGCCTCAATAAACCATTCAATCTGTAGTAGG					PREDICTED: Rattus norvegicus LOC501229 (LOC501229), mRNA.					
Rattus norvegicus	RefSeq	GI_62667278-S	ILMN_53789	LOC501624	XM_580221.1	XM_580221.1		501624	62667278	XM_580221.1	LOC501624	XP_580221.1	ILMN_1350914	0004590487	S	727	TCTCCCAGCCCATGCTTCCGTCTTTTGTACCCGGAGGGGCCTTGGAAATG				Xq35	PREDICTED: Rattus norvegicus LOC501624 (LOC501624), mRNA.					
Rattus norvegicus	RefSeq	GI_62658763-A	ILMN_270133	CLDN4	NM_001012022.1	NM_001012022.1		304407	58865611	NM_001012022.1	Cldn4	NP_001012022.1	ILMN_1376751	0001090242	S	1420	GAAGTTCTGTGGAGTGGCTGGACAGGTTTGAGGGAAGGGTGGAGGTGGTT	12	+	22817553-22817602	12q12	Rattus norvegicus claudin 4 (Cldn4), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649537-S	ILMN_292485	RGD1311937_PREDICTED	XM_001069629.1	XM_001069629.1		313545	109477042	XM_001069629.1	RGD1311937_predicted	XP_001069629.1	ILMN_1353033	0006840288	S	666	GGCTGCCATGCTGTCTGTGGGCATTACCTTGGCTTCCTTGGGCTCAGTCT				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC17299 (predicted) (RGD1311937_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758965-S	ILMN_273002	KLF15	NM_053536.1	NM_053536.1		85497	16758965	NM_053536.1	Klf15	NP_445988.1	ILMN_1368797	0004480500	S	2106	CTGTGGTGGGAAGCGAAAGGAGCAGGTCTGGTGGATGCAAAGCGACTAGC	4	+	124726640-124726689	4q34	Rattus norvegicus Kruppel-like factor 15 (Klf15), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC108619	MGC108619
Rattus norvegicus	RefSeq	GI_62659389-S	ILMN_278196	RGD1311892_PREDICTED	XM_001063937.1	XM_001063937.1		289399	109498695	XM_001063937.1	RGD1311892_predicted	XP_001063937.1	ILMN_1369962	0001050014	S	2139	GGCCCCCGTGCAAGTCTTTGTGCCTGAGAATGGAGAGATCATCAGCCAAG				13q13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10901 (predicted) (RGD1311892_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32563561-S	ILMN_295078	CORIN	NM_182473.1	NM_182473.1		289596	32563561	NM_182473.1	Corin	NP_872279.1	ILMN_1350823	0002760672	S	3395	GACCCTCTTGAACAGGAAGCTGCCAAGAGCTGTACGAACAGGCGTGTCAC				14p11	Rattus norvegicus corin, serine peptidase (Corin), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence IMP]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IMP]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660041-S	ILMN_280787	RGD1306921_PREDICTED	XM_001061679.1	XM_001061679.1		305122	109500238	XM_001061679.1	RGD1306921_predicted	XP_001061679.1	ILMN_1373458	0002260110	S	4937	CAGCACACGCTGACACTTGGAACAGGTGGAGTGAACTGTCGTCCCCACTT					PREDICTED: Rattus norvegicus similar to mKIAA1107 protein (predicted) (RGD1306921_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660514-S	ILMN_279345	LOC681180	XM_001059937.1	XM_001059937.1		681180	109499714	XM_001059937.1	LOC681180	XP_001059937.1	ILMN_1371327	0005080402	S	853	CGATTTAATAGGCCATACTTTCACCTTGCCTCTCTGCAGCAAGTGTGCAC	14	+	49289467-49289516	14q11	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC681180), mRNA.					
Rattus norvegicus	RefSeq	GI_62654007-S	ILMN_58595	LOC503217	XM_578741.1	XM_578741.1		503217	62654007	XM_578741.1	LOC503217	XP_578741.1	ILMN_1367811	0006760017	S	242	CTTCCTCACTCCCCTAGTTGTGGTTTTTGTGTTGACTGAATGGCAGGCTC					PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (LOC503217), mRNA.					
Rattus norvegicus	RefSeq	GI_62653576-S	ILMN_292039	ABCG4	XM_001066633.1	XM_001066633.1		300664	109484596	XM_001066633.1	Abcg4	XP_001066633.1	ILMN_1367911	0004760379	S	3218	ATATTCATCTTCCAGTCAGCAGCTGGGTCCTGGACATCAGAGCAGCGGGG				8q22	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 4 (Abcg4), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45542] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662519-S	ILMN_56242	LOC317124	XM_229834.3	XM_229834.3		317124	62662519	XM_229834.3	LOC317124	XP_229834.3	ILMN_1374603	0006290026	S	10	GGATGTGTCTGAGGAGGATGAGCACACCATCCTTCCAGGAGTGGATGAGG				16p13	PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC317124), mRNA.					
Rattus norvegicus	RefSeq	GI_62656819-S	ILMN_70134	LOC501711	XM_577116.1	XM_577116.1		501711	62656819	XM_577116.1	LOC501711	XP_577116.1	ILMN_2039606	0006900370	S	114	GGAGGCGCAGAGGCAGGTTACCACAGCTTCTTCTAGCTGGTTGTGCTTGT					PREDICTED: Rattus norvegicus similar to RNA methyltransferase like 1 (LOC501711), mRNA.					
Rattus norvegicus	RefSeq	GI_62660555-S	ILMN_267745	RGD1311045_PREDICTED	XM_001057772.1	XM_001057772.1		360947	109500694	XM_001057772.1	RGD1311045_predicted	XP_001057772.1	ILMN_1368978	0004570722	S	926	GCTCTTGAGCAAGGGAGGCAACAAAAGCCATGCTGCTTCCTTAGGCGCTG				14q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933428G09 (predicted) (RGD1311045_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647806-S	ILMN_269238	RGD1562315_PREDICTED	XR_008890.1	XR_008890.1		502854	109473806	XR_008890.1	RGD1562315_predicted		ILMN_1366645	0001240113	S	18	GGGTGGCGAGAAAAAGAAGGGCTGTTCTGCCATCAATGGGGTGGTGACCT				4q34	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1562315_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640820-S	ILMN_55910	EFTUD1_PREDICTED	XM_218845.4	XM_218845.4		308789	109459003	XM_218845.4	Eftud1_predicted	XP_218845.4	ILMN_1369556	0004280711	S	1796	TCCAGGACTCTGTGTTGAAATCTGCGACTCTGTGCAGCCTGCCCTCTTGC	1	+	139014787-139014836	1q31	PREDICTED: Rattus norvegicus elongation factor Tu GTP binding domain containing 1 (predicted) (Eftud1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640822-S	ILMN_55910	EFTUD1_PREDICTED	XM_218845.4	XM_218845.4		308789	109459003	XM_218845.4	Eftud1_predicted	XP_218845.4	ILMN_1361617	0003520458	S	3305	GGCCCGAAAGTACATGAATGCAGTGCGGAAGCGGAAGGGCCTCTATGTGG	1	+	139044068-139044117	1q31	PREDICTED: Rattus norvegicus elongation factor Tu GTP binding domain containing 1 (predicted) (Eftud1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655238-S	ILMN_265242	DNPEP	NM_001024879.1	NM_001024879.1		301529	67846035	NM_001024879.1	Dnpep	NP_001020050.1	ILMN_1367510	0001190397	S	1370	CACCATTGGACCTATCTTGGCTTCTCGACTGGGGCTTCGGGTGCTGGACT	9	-	74587372-74587421	9q33	Rattus norvegicus aspartyl aminopeptidase (Dnpep), mRNA.	A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol [goid 5773] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_66730408	ILMN_283249	GPR139	NM_001024241.1	NM_001024241.1		293545	66730408	NM_001024241.1	Gpr139	NP_001019412.1	ILMN_1530481	0002650497	S	208	TTTTTCATCGTCTTTGTGGATTTCTTGTTAGAAGACTTCATTTTGACCAT	1	-	177374399-177374448	1q35	Rattus norvegicus G protein-coupled receptor 139 (Gpr139), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641202-S	ILMN_283249	GPR139	NM_001024241.1	NM_001024241.1		293545	66730408	NM_001024241.1	Gpr139	NP_001019412.1	ILMN_1360837	0005420600	S	847	CGCTTCCGTACCATGGCAGCTGCTACACTCAAGGCCTTGTTCAAGTGCCA	1	-	177373760-177373809	1q35	Rattus norvegicus G protein-coupled receptor 139 (Gpr139), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664505-S	ILMN_61467	PDE6A_PREDICTED	XM_225895.4	XM_225895.4		307401	109506688	XM_225895.4	Pde6a_predicted	XP_225895.3	ILMN_1370953	0002120593	S	2527	CTAACAACCGTAAGGAGTGGAAGGCGCTGGCTGATGAGTACGAGGCCAGG	18	+	57264267-57264316	18q12.1	PREDICTED: Rattus norvegicus phosphodiesterase 6A, cGMP-specific, rod, alpha (predicted) (Pde6a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666975-S	ILMN_58880	LOC503440	XM_578986.1	XM_578986.1		503440	62666975	XM_578986.1	LOC503440	XP_578986.1	ILMN_1368165	0004590176	S	22	GGAAGAAGCTATCCCAGGCCCATCAGCATCCAGTCAAGGCTGTTCTAAGG				Xq22	PREDICTED: Rattus norvegicus similar to SNARE protein Ykt6 (LOC503440), mRNA.					
Rattus norvegicus	RefSeq	GI_47577200-S	ILMN_281390	OLR35	NM_001000121.1	NM_001000121.1		293140	47577200	NM_001000121.1	Olr35	NP_001000121.1	ILMN_1349860	0001050450	S	803	GGGCTGATCTGCCTCTGGACTTCCACATCATGGGGAATGTGGTCTATTCG	1	+	157075972-157076021	1q32	Rattus norvegicus olfactory receptor 35 (Olr35), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]		
Rattus norvegicus	RefSeq	GI_62667516-S	ILMN_66822	RGD1566155_PREDICTED	XM_577054.2	XM_577054.2		501658	109511285	XM_577054.2	RGD1566155_predicted	XP_577054.1	ILMN_1370505	0005290519	S	316	GACGGACACCACGAACCCCCCGTGGAAATGAAAACTCTTTAGCTGCGACC	X	+	157237295-157237319:157241187-157241211	Xq37	PREDICTED: Rattus norvegicus similar to 2610030H06Rik protein (predicted) (RGD1566155_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663166	ILMN_66811	LOC498694	XM_579851.1	XM_579851.1		498694	62663166	XM_579851.1	LOC498694	XP_579851.1	ILMN_1651156	0006940528	S	219	GATGCTGTAAACAAGCTAGCCATGCATCATCTCCATCCACCCAGCGGACG					PREDICTED: Rattus norvegicus LOC498694 (LOC498694), mRNA.					
Rattus norvegicus	RefSeq	GI_62658479-S	ILMN_292114	MGC125213	NM_001034153.1	NM_001034153.1		498146	77627751	NM_001034153.1	MGC125213	NP_001029325.1	ILMN_1359773	0004060520	S	776	TCCAGGCTTACAATCCAGATCTCTGGGTGTGGGCACGAGATCGCACCAAC	12	+	11713651-11713700	12p11	Rattus norvegicus similar to speedy B isoform (MGC125213), mRNA.					
Rattus norvegicus	RefSeq	GI_62644251-S	ILMN_277462	PALMD	NM_001025688.1	NM_001025688.1		310811	71043605	NM_001025688.1	Palmd	NP_001020859.1	ILMN_1350622	0005220132	S	1882	GGCCAAGCTGGGGAAAAAGGTGATCTGAGAGCCATTGTGCCCACCAGAGT	2	-	213175175-213175196:213175197-213175224	2q41	Rattus norvegicus palmdelphin (Palmd), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]		MGC112777	MGC112777
Rattus norvegicus	RefSeq	GI_62656371-S	ILMN_62877	RGD1306656_PREDICTED	XM_346892.3	XM_346892.3		360555	109488411	XM_346892.3	RGD1306656_predicted	XP_346893.2	ILMN_1367320	0003990450	S	473	GCTCAGAGGCTACACCTGAACTCCCAGTGTTTGAAGAGGGCTGTGAACTC	10	-	57568997-57569046	10q24	PREDICTED: Rattus norvegicus LOC360555 (predicted) (RGD1306656_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654937-S	ILMN_262417	LOC689581	XM_001071547.1	XM_001071547.1		689581	109508034	XM_001071547.1	LOC689581	XP_001071547.1	ILMN_1371889	0001570022	S	3932	CTTACACTGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGC	19	+	37347325-37347374	19q12	PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 5B (eIF-5B) (Translation initiation factor IF-2), transcript variant 2 (LOC689581), mRNA.					
Rattus norvegicus	RefSeq	GI_62665457-S	ILMN_288497	RGD1559496_PREDICTED	XM_001054819.1	XM_001054819.1		292101	109509066	XM_001054819.1	RGD1559496_predicted	XP_001054819.1	ILMN_1357734	0005130465	S	1563	CAAGGAGCAAACACAGAGTGGTGGTGACCTTGAGGATAGCTCACGGCCCA				19q12	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1559496_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644003-S	ILMN_53991	LOC502570	XM_578055.1	XM_578055.1		502570	62644003	XM_578055.1	LOC502570	XP_578055.1	ILMN_1358894	0000630070	S	332	CCAACAGAGCAAGCACTGCAGTTCCAAGTCTGAAGAGGTCAGAACTCACC					PREDICTED: Rattus norvegicus similar to TDPOZ3 (LOC502570), mRNA.					
Rattus norvegicus	RefSeq	GI_62664046-S	ILMN_53005	RIOK3_PREDICTED	XM_341578.3	XM_341578.3		361293	109506309	XM_341578.3	Riok3_predicted	XP_341579.3	ILMN_1357020	0001410433	S	1974	TTCCAAACGTGGGAGGTGGGGACTGAGGTTTTTGCAGGGGAGGCTCGATG	18	+	3697444-3697493	18p13	PREDICTED: Rattus norvegicus RIO kinase 3 (yeast) (predicted) (Riok3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644661-S	ILMN_65491	LOC502609	XM_578097.1	XM_578097.1		502609	62644661	XM_578097.1	LOC502609	XP_578097.1	ILMN_1354627	0004780075	S	291	GCCAGAGGTGTTCCTGCTCTCACCACCGATCAGTTGGCATTCCATGAGGG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502609), mRNA.					
Rattus norvegicus	RefSeq	GI_57114217-S	ILMN_280827	V1RG1	NM_001008904.1	NM_001008904.1		494256	57114217	NM_001008904.1	V1rg1	NP_001008904.1	ILMN_1368655	0002900717	S	926	CCTTCGTTCTTCTCATCAACATTAAGCCTATTTCCAGCCTGCTTTTACCC	1	-	71096078-71096127	1q21	Rattus norvegicus vomeronasal 1 receptor, G1 (V1rg1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651344-S	ILMN_58845	LOC366746	XM_345734.2	XM_345734.2		366746	62651344	XM_345734.2	LOC366746	XP_345735.2	ILMN_1355119	0001340278	S	187	GAAAGGGTCTGGAGTGGATGGGAGTAATCTGGAATACTGGAGGCACACGG					PREDICTED: Rattus norvegicus similar to Ig heavy-chain V region precursor (LOC366746), mRNA.					
Rattus norvegicus	RefSeq	GI_62666240-S	ILMN_64670	LOC502468	XM_577948.1	XM_577948.1		502468	62666240	XM_577948.1	LOC502468	XP_577948.1	ILMN_1360890	0000070471	S	663	GAGTCCCAGCCACCCCAAGTGGCACATCACAGACAGCGACTCAAGCATAA					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502468), mRNA.					
Rattus norvegicus	RefSeq	GI_62662057-S	ILMN_284331	ZIC5_PREDICTED	XM_001079050.1	XM_001079050.1		361095	109502970	XM_001079050.1	Zic5_predicted	XP_001079050.1	ILMN_1361325	0003870100	S	1485	GAAACAATGCTGAGCCTGAGACAAACTGGTGATTCAGACTTGCCACCGGG				15q25	PREDICTED: Rattus norvegicus zinc finger protein of the cerebellum 5 (predicted) (Zic5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649740-S	ILMN_67942	RGD1565267_PREDICTED	XM_575918.2	XM_575918.2		500555	109475569	XM_575918.2	RGD1565267_predicted	XP_575918.1	ILMN_1372517	0007100750	S	1514	CCAAGACCCTGGAAAGAGGCCAAGCAGAGGCACAAAGCCAAGGCCACTAG	5	-	149347720-149347769	5q36	PREDICTED: Rattus norvegicus similar to PS1D protein (predicted) (RGD1565267_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648162-S	ILMN_265822	NOL1_PREDICTED	XM_001065060.1	XM_001065060.1		314969	109474223	XM_001065060.1	Nol1_predicted	XP_001065060.1	ILMN_1368833	0005290537	S	2336	GCTCACCACAGTTCCACCAGGCCCCCACCGGCAAAGAGGAGGAAATCTAT				4q42	PREDICTED: Rattus norvegicus nucleolar protein 1 (predicted) (Nol1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649033-S	ILMN_53649	LOC313202	XM_232943.3	XM_232943.3		313202	62649033	XM_232943.3	LOC313202	XP_232943.3	ILMN_1367030	0006290592	S	2747	CCGCTTTCCTGCTCACGCAGTGTTTTGAGCCAGATGAGAAAGTGGCGCCG				5q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E130308A19 (predicted) (LOC313202), mRNA.					
Rattus norvegicus	RefSeq	GI_58865619-A	ILMN_298913	MDM4	NM_001012026.1	NM_001012026.1		304798	58865619	NM_001012026.1	Mdm4	NP_001012026.1	ILMN_1376455	0002060082	S	1487	ACATGTTTCCACTGTGCCAGGAGACTGAAGAAGTCTGGGGCTTCATGTCC	13	-	45896193-45896242	13q13	Rattus norvegicus Mdm4 p53 binding protein homolog (mouse) (Mdm4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; The transition from the G0 quiescent state to the G1 phase. Under certain conditions, cells exit the cell cycle during G1 and remain in the G0 state as nongrowing, non-dividing (quiescent) cells. Appropriate stimulation of such cells induces them to return to G1 and resume growth and division. The G0 to G1 transition is accompanied by many changes in the program of gene expression [goid 45023] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666164-S	ILMN_61293	LOC502432	XM_577914.1	XM_577914.1		502432	62666164	XM_577914.1	LOC502432	XP_577914.1	ILMN_1369429	0004540114	S	1458	GTTCAAGTGGAGATTCTCTCCCCAGGCCCTGTACTTCTGGAAGGTGCAGT					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502432), mRNA.					
Rattus norvegicus	RefSeq	GI_62653034	ILMN_279780	LOC680876	XM_001059275.1	XM_001059275.1		680876	109481285	XM_001059275.1	LOC680876	XP_001059275.1	ILMN_1650907	0003140687	S	1626	CTCCAGCTCCAGCACTAGCTGCAGGCATCGATGCTTCTATGCTGTTTCCC					PREDICTED: Rattus norvegicus similar to Tubulin alpha-2 chain (Alpha-tubulin 2) (LOC680876), mRNA.					
Rattus norvegicus	RefSeq	GI_62661229-S	ILMN_67780	LOC501973	XM_577401.1	XM_577401.1		501973	62661229	XM_577401.1	LOC501973	XP_577401.1	ILMN_1366576	0005670184	S	607	TGCACCTGGAGGCCATTCTGGGAAGAGAAAGCATCCATTCCAGGCAGTCC					PREDICTED: Rattus norvegicus similar to hypothetical protein, expressed (LOC501973), mRNA.					
Rattus norvegicus	RefSeq	GI_62651649-I	ILMN_52375	RNF41_PREDICTED	XM_576140.1	XM_576140.1		362814	62651649	XM_576140.1	Rnf41_predicted	XP_576140.1	ILMN_1376059	0005340022	S	1526	CCTGAGGAAACTTCCTGTTTCTCTGGGTTCTAACCTTCACCAGACAGATG				7q11	PREDICTED: Rattus norvegicus ring finger protein 41 (predicted) (Rnf41_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12025525-S	ILMN_296530	HIST1H2BL	NM_022647.1	NM_022647.1		64647	12025525	NM_022647.1	Hist1h2bl	NP_072173.1	ILMN_1358864	0004150440	S	42	CTCCAAGAAGGCTGTGACCAAGGCCCAGAAGAAGGACGGCAAGGAACGCA	17	+	48771914-48771963	17q11	Rattus norvegicus histone cluster 1, H2bl (Hist1h2bl), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	H2b	H2b
Rattus norvegicus	RefSeq	GI_62659334-S	ILMN_273666	OPTC_PREDICTED	XM_001061460.1	XM_001061460.1		304802	109498643	XM_001061460.1	Optc_predicted	XP_001061460.1	ILMN_1363246	0002940170	S	1193	AGACATCCGCCTGGACGGGAACCCCATCAATCTGAGCCTTTTCCCAGAGG				13q13	PREDICTED: Rattus norvegicus opticin (predicted) (Optc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651391-S	ILMN_61345	LOC366767	XM_345754.2	XM_345754.2		366767	62651391	XM_345754.2	LOC366767	XP_345755.1	ILMN_1369770	0000060093	S	306	CCTACATGCTACTGGGCAGCCTGACACCTGAGGACTCTGCGTACTATTTC				6q33	PREDICTED: Rattus norvegicus similar to IG HEAVY CHAIN V REGION VH558 A1/A4 PRECURSOR (LOC366767), mRNA.					
Rattus norvegicus	RefSeq	GI_62664304-S	ILMN_56249	PCDHGA7_PREDICTED	XM_226025.3	XM_226025.3		291635	62664304	XM_226025.3	Pcdhga7_predicted	XP_226025.3	ILMN_1355113	0004730180	S	2659	GTCCGTTTGGAGCCCGGAATATCCGCACCACGGAACTTCTTCGTAACCCG				18p11	PREDICTED: Rattus norvegicus protocadherin gamma subfamily A, 7 (predicted) (Pcdhga7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928747-S	ILMN_275508	ADD3	NM_031552.1	NM_031552.1		25230	13928747	NM_031552.1	Add3	NP_113740.1	ILMN_1349336	0002510133	S	1840	CGAGAGACAGCAGCAAGGCCTGGACGAAAACCACGAGCTGTTTTCCAAGA	1	-	259349737-259349786	1q55	Rattus norvegicus adducin 3 (gamma) (Add3), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]		Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660776-S	ILMN_54747	LOC498407	XM_573651.1	XM_573651.1		498407	62660776	XM_573651.1	LOC498407	XP_573651.1	ILMN_1364794	0002680215	S	7997	CAGAAACCACACTTCCTGAAAACCGTTCAAAGCAGAGTCCAGACGGGCTG				14q21	PREDICTED: Rattus norvegicus similar to purine rich element binding protein B (LOC498407), mRNA.					
Rattus norvegicus	RefSeq	GI_56605821-S	ILMN_275506	SFRS12IP1	NM_001008373.1	NM_001008373.1		361888	56605821	NM_001008373.1	Sfrs12ip1	NP_001008374.1	ILMN_1374839	0001090373	S	2095	GTACGTGCAGCTTCCGCTCTTCCACAAACTGGCTACTCTCCCAGCCCATA	2	+	35849283-35849332	2q13	Rattus norvegicus SFRS12-interacting protein 1 (Sfrs12ip1), mRNA.		Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105985; p18SRP	MGC105985; p18SRP
Rattus norvegicus	RefSeq	GI_53850595-S	ILMN_263667	SDHC	NM_001005534.1	NM_001005534.1		289217	53850595	NM_001005534.1	Sdhc	NP_001005534.1	ILMN_1374331	0004610301	S	926	TCATCCTGCCCAGCTAGAGGGAGATAAAGAGCAGCGTGGATCTTGGGAGC	13	-	87014742-87014791	13q24	Rattus norvegicus succinate dehydrogenase complex, subunit C, integral membrane protein (Sdhc), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor. No reaction with quinols [goid 104] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	MGC95158	MGC95158
Rattus norvegicus	RefSeq	GI_50054161-S	ILMN_268841	EEF1A2	NM_012660.2	NM_012660.2		24799	50054161	NM_012660.2	Eef1a2	NP_036792.2	ILMN_1367508	0007100671	S	1950	AGGCTTCCGCGCCAGTGCTGACCACGCTCAGTGCCCGTTTTCCCAATAAA	3	-	170295341-170295390	3q43	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 2 (Eef1a2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence ISS]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence ISS]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	RATPS10; Stnl; Ps10	RATPS10; Stnl; Ps10
Rattus norvegicus	RefSeq	GI_40786458-S	ILMN_279216	LAPTM4A	NM_199384.1	NM_199384.1		298875	40786458	NM_199384.1	Laptm4a	NP_955416.1	ILMN_1372967	0003850070	S	1128	CCAGAGAGTGAGTTGGTCGAAGATCCGCAGTCTCCAGCTCTGTGAAACAG	6	+	32427763-32427812	6q14	Rattus norvegicus lysosomal-associated protein transmembrane 4A (Laptm4a), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47577674-S	ILMN_295148	OLR566	NM_001000665.1	NM_001000665.1		404867	47577674	NM_001000665.1	Olr566	NP_001000665.1	ILMN_1349684	0006940746	S	552	TTGTGACTTACCGCCCATTCTCAAGCTGGCCTGTGGGGATACTTCAATAC	3	+	71139135-71139184	3q24	Rattus norvegicus olfactory receptor 566 (Olr566), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr566	Olr566
Rattus norvegicus	RefSeq	GI_16758537-S	ILMN_289199	RASGRF2	NM_053721.1	NM_053721.1		114513	16758537	NM_053721.1	Rasgrf2	NP_446173.1	ILMN_1364232	0003520603	S	3179	GGCTGAAGAAAACCTGGACCAAGGTGTCCAAGCAGACAAAAGCTCTGATG	2	-	22117347-22117396	2q12	Rattus norvegicus RAS protein-specific guanine nucleotide-releasing factor 2 (Rasgrf2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.84364	ILMN_161074	RN.84364	Rn.84364		Rn.84364		33164484	CF109537			ILMN_1530239	0005720131	S	102	AGCAGAATACATTGCTTCTCTCTTTGGTAACTCAGAAATGAATATAATAA					Shultzomica02788 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig2430 5', mRNA					
Rattus norvegicus	RefSeq	GI_62641211-S	ILMN_52088	LOC309036	XM_219390.3	XM_219390.3		309036	62641211	XM_219390.3	LOC309036	XP_219390.3	ILMN_1361409	0002260195	S	1406	AAAGAGGTGCTTGAGCAAGCCAGAGTGGAAGTCCCTTTGTTCCCCGCTCC				1q35	PREDICTED: Rattus norvegicus similar to exonuclease NEF-sp (predicted) (LOC309036), mRNA.					
Rattus norvegicus	RefSeq	GI_62664985-S	ILMN_48578	LOC498927	XM_574214.1	XM_574214.1		498927	62664985	XM_574214.1	LOC498927	XP_574214.1	ILMN_1365541	0001770184	S	891	CAGCTGTTCTCCATAGAAGAGTCGCTGAGCTACAATCCAGAAAGGGAGTC					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC498927), mRNA.					
Rattus norvegicus	RefSeq	GI_62662335	ILMN_63065	LOC502060	XM_577493.1	XM_577493.1		502060	62662335	XM_577493.1	LOC502060	XP_577493.1	ILMN_1650039	0003800167	S	930	GGACCTGAGGGAGACCTGTAGACACTCACACATCAGTGCAGAGACTGTAG				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502060), mRNA.					
Rattus norvegicus	RefSeq	GI_62661368-S	ILMN_262458	RPGRIP1	XM_001074342.1	XM_001074342.1		305850	109501584	XM_001074342.1	Rpgrip1	XP_001074342.1	ILMN_1364953	0006510600	S	1656	GTCACACGCAGAGACCGCACTGGAGCTGGAGAAAACCAGAGACATGCTTC	15	+	27578250-27578299	15p14	PREDICTED: Rattus norvegicus retinitis pigmentosa GTPase regulator interacting protein 1 (Rpgrip1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; The bundle of microtubules and associated proteins that forms the core of cilia and flagella in eukaryotic cells and is responsible for their movements [goid 5930] [evidence ISS]	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661342-S	ILMN_262458	RPGRIP1	XM_001074342.1	XM_001074342.1		305850	109501584	XM_001074342.1	Rpgrip1	XP_001074342.1	ILMN_1362627	0001190427	S	4721	CTGATGATGAGCTTTAAGATACTGGGGGGCTCTCTCTTGCCGTCCTCCCC	15	+	27604910-27604959	15p14	PREDICTED: Rattus norvegicus retinitis pigmentosa GTPase regulator interacting protein 1 (Rpgrip1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; The bundle of microtubules and associated proteins that forms the core of cilia and flagella in eukaryotic cells and is responsible for their movements [goid 5930] [evidence ISS]	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6981377-S	ILMN_273210	PNOC	NM_013007.1	NM_013007.1		25516	6981377	NM_013007.1	Pnoc	NP_037139.1	ILMN_1355240	0005360139	S	830	GGGCCAGGTGAGAGGAACATGAAATCAGACCTGGGGTTTTGCCTCACCAC	15	-	44822728-44822777	15p12	Rattus norvegicus prepronociceptin (Pnoc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]	Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect [goid 1515] [evidence IEA]	N23K; Npnc1	N23K; Npnc1
Rattus norvegicus	RefSeq	GI_62664128-S	ILMN_65009	RGD1307374_PREDICTED	XM_214609.4	XM_214609.4		291736	109506376	XM_214609.4	RGD1307374_predicted	XP_214609.4	ILMN_1371852	0005910520	S	1327	GTCTCCTCCAGGGCCAGGACTTTGCCAGACATGGAGACAGGTTAGGTGAA	18	-	16283470-16283519	18p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC36325 (predicted) (RGD1307374_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645534-S	ILMN_63633	LOC499862	XM_575203.1	XM_575203.1		499862	62645534	XM_575203.1	LOC499862	XP_575203.1	ILMN_1357275	0000110059	S	809	GGGGGGTGGGGTGGAGTGAACGGAAATACCTCGCGTACAATTTATTAAAC				3q34	PREDICTED: Rattus norvegicus similar to C6.1A protein (LOC499862), mRNA.					
Rattus norvegicus	RefSeq	GI_62662960-S	ILMN_59657	ATP11A_PREDICTED	XM_225014.4	XM_225014.4		306600	109503580	XM_225014.4	Atp11a_predicted	XP_225014.4	ILMN_1354476	0001090377	S	3451	CTGCTCTGGGGAGGGATTATCTGGCCGTTCCTCAGCTACCAGCGGATGTA	16	-	81524030-81524057:81524903-81524924	16q12.5	PREDICTED: Rattus norvegicus ATPase, class VI, type 11A (predicted) (Atp11a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656263-S	ILMN_57046	RGD1563261_PREDICTED	XM_573118.2	XM_573118.2		497931	109488344	XM_573118.2	RGD1563261_predicted	XP_573118.1	ILMN_1350193	0004150164	S	2439	CAGCATGGAGGCGCTGACGCTAACCCTGACAGAAGTGGTGAAGAGGCAGA	10	+	55246951-55247000	10q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1563261_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24475748-S	ILMN_295362	SLC9A3R2	NM_053811.2	NM_053811.2		116501	24475748	NM_053811.2	Slc9a3r2	NP_446263.1	ILMN_1356915	0002480128	S	1105	GCTACTCGGGTCAATAAGAGAGCACCACAGATGGACTGGAACCGGAAGCG	10	-	13891318-13891367	10q12	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulator 2 (Slc9a3r2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IMP]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS];  [goid 16247] [evidence IMP]	E3karp	E3karp
Rattus norvegicus	RefSeq	GI_62645992-S	ILMN_286802	PAX1_MAPPED	XM_001056369.1	XM_001056369.1		311505	109470969	XM_001056369.1	Pax1_mapped	XP_001056369.1	ILMN_1359768	0006370056	S	1363	GACGCACTCGGTAGCTTACACGGACTTTCCATCCCGGCTTCGACCTCCTA				3q41	PREDICTED: Rattus norvegicus paired box gene 1 (mapped) (Pax1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62641674-S	ILMN_270303	TMEM16A_PREDICTED	XM_001066475.1	XM_001066475.1		309135	109463291	XM_001066475.1	Tmem16a_predicted	XP_001066475.1	ILMN_1355040	0007000673	S	2954	CCGCCCGGCTGGCATTCGTCATTGTCTTCCAGAACCTGGTGATGTTCATG				1q42	PREDICTED: Rattus norvegicus transmembrane protein 16A (predicted) (Tmem16a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657949-S	ILMN_275586	RGD1565297_PREDICTED	XM_001071048.1	XM_001071048.1		498088	109494464	XM_001071048.1	RGD1565297_predicted	XP_001071048.1	ILMN_1371146	0003850438	S	665	GGGAGGCCAGAGACGAGGCTGAAGAAAAGTCTGAGGAGAAGCAATGAATC				11q22	PREDICTED: Rattus norvegicus similar to hypothetical protein A (predicted) (RGD1565297_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540690-S	ILMN_300945	MTR	NM_030864.1	NM_030864.1		81522	13540690	NM_030864.1	Mtr	NP_110491.1	ILMN_1373194	0006510148	S	4182	GAGAAGGCTGGTTGATGGCATGTGATGTAGAGCGTCTTCTAGGGTCTGGG	17	+	68866800-68866849	17q12.1	Rattus norvegicus 5-methyltetrahydrofolate-homocysteine methyltransferase (Mtr), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IDA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence IDA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence ISS]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence IDA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence IEA]; The chemical reactions and pathways resulting in the formation of folic acid and its derivatives [goid 9396] [evidence IEA]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]; The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety [goid 46653] [evidence IDA]; The chemical reactions and pathways involving homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. Homocysteine is an important intermediate in the metabolic reactions of its S-methyl derivative, methionine [goid 50667] [evidence IDA]	Catalysis of the reaction: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate + 4-aminobenzoate = diphosphate + dihydropteroate [goid 4156] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IDA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IDA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: 5-methyltetrahydrofolate + L-homocysteine = tetrahydrofolate + L-methionine [goid 8705] [evidence IDA]; Catalysis of the reaction: 5-methyltetrahydrofolate + L-homocysteine = tetrahydrofolate + L-methionine [goid 8705] [evidence ISS]; Catalysis of the reaction: 5-methyltetrahydrofolate + L-homocysteine = tetrahydrofolate + L-methionine [goid 8705] [evidence IDA]; Catalysis of the reaction: 5-methyltetrahydrofolate + L-homocysteine = tetrahydrofolate + L-methionine [goid 8705] [evidence ISS]; Catalysis of the reaction: 5-methyltetrahydrofolate + L-homocysteine = tetrahydrofolate + L-methionine [goid 8705] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine [goid 8898] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence TAS]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]	methioninesynthase	methioninesynthase
Rattus norvegicus	RefSeq	GI_31377527	ILMN_68819	HSD3B1	NM_017265.2	NM_017265.2		29632	31377527	NM_017265.2	Hsd3b1	NP_058961.2	ILMN_1650913	0001780546	S	2566	GTTCCCCTTCAAGTCCTAAATCACACCCTGCTTTGGTTAAAACTCACTGC				2q34	Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 (Hsd3b1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways resulting in the formation of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 6701] [evidence IDA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IEA]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IDA]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence ISS]; Catalysis of the reaction: a 3-oxo-delta(5)-steroid = a 3-oxo-delta(4)-steroid [goid 4769] [evidence IEA]; Catalysis of the reaction: a 3-oxo-delta(5)-steroid = a 3-oxo-delta(4)-steroid [goid 4769] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62660922-S	ILMN_62613	LOC501935	XM_577361.1	XM_577361.1		501935	62660922	XM_577361.1	LOC501935	XP_577361.1	ILMN_1355859	0004060040	S	1701	GCCCATGGCTGTCTGGACTTCAGGCTGTCTCTCCCGAAGGTGTTTCAGGA					PREDICTED: Rattus norvegicus similar to Ac2-210 (LOC501935), mRNA.					
Rattus norvegicus	RefSeq	GI_62638542-S	ILMN_54786	MAP3K4_PREDICTED	XM_217804.4	XM_217804.4		308106	109457741	XM_217804.4	Map3k4_predicted	XP_217804.4	ILMN_1373545	0006590563	S	5334	TCCAGGACCTTGTTTCCGCCTCCTGTTTGTTGGCTCTGACTGTGGCTCCG	1	+	42978704-42978753	1q11	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase kinase 4 (predicted) (Map3k4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641290-S	ILMN_275485	RGD1308215_PREDICTED	XM_001077731.1	XM_001077731.1		293493	109462857	XM_001077731.1	RGD1308215_predicted	XP_001077731.1	ILMN_1370747	0006660364	S	1934	AGAATAAGGAGGAGCTATATACCCTTGGGAGCTGAGGTCAGATTGGCAGG				1q36	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434I2117 (predicted) (RGD1308215_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21728389-S	ILMN_54835	FHL1	NM_145669.2	NM_145669.2		25177	76781463	NM_145669.2	Fhl1	NP_663702.1	ILMN_1367033	0006650687	S	1069	AAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTCGGG	X	+	141328260-141328309	Xq36	Rattus norvegicus four and a half LIM domains 1 (Fhl1), transcript variant 2, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	SLIM1	SLIM1
Rattus norvegicus	RefSeq	GI_47577002-S	ILMN_281697	OLR278	NM_001000730.1	NM_001000730.1		404986	47577002	NM_001000730.1	Olr278	NP_001000730.1	ILMN_1368714	0001500593	S	267	GGTGGAGAGAAACACCATCTCCTATCTTGGATGTGGCATCCAGCTTGGCT	1	-	166133113-166133162	1q33	Rattus norvegicus olfactory receptor 278 (Olr278), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr278	Olr278
Rattus norvegicus	RefSeq	GI_62664399-S	ILMN_49068	LOC364873	XM_344684.2	XM_344684.2		364873	62664399	XM_344684.2	LOC364873	XP_344685.2	ILMN_1355985	0004570088	S	730	GGGGCCCACATTTCTGCCAAGGGAGAGACAGCTAAACATCCCTTTCTCCA				18q11	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC364873), mRNA.					
Rattus norvegicus	RefSeq	GI_62650447-S	ILMN_60162	LOC313940	XM_233953.3	XM_233953.3		313940	62650447	XM_233953.3	LOC313940	XP_233953.3	ILMN_1349311	0005360746	S	1202	ACGAGAACTGCGGTTGTTCCTCAGGGATGTTACCAAGAGGCTGGCCACAG					PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA1240 (LOC313940), mRNA.					
Rattus norvegicus	RefSeq	GI_62660286-S	ILMN_262404	ADAMTS3_PREDICTED	XM_001072843.1	XM_001072843.1		305253	109500405	XM_001072843.1	Adamts3_predicted	XP_001072843.1	ILMN_1371547	0004540100	S	4073	GGAAAGACTATTAGCAGGAGACATCCGATCAGGTCAACCGCCTCAGAGAG				14p22	PREDICTED: Rattus norvegicus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3 (predicted) (Adamts3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656529-S	ILMN_54464	RUTBC1_PREDICTED	XM_220699.4	XM_220699.4		303304	109488516	XM_220699.4	Rutbc1_predicted	XP_220699.3	ILMN_1348849	0003450647	S	3954	GCTCATAGACAACAAGTGAGGGCTGCAGGCGGCAAAGTGGAGAGCCTAGG	10	-	62166653-62166684:62166685-62166702	10q24	PREDICTED: Rattus norvegicus RUN and TBC1 domain containing 1 (predicted) (Rutbc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575974-S	ILMN_277186	OLR927	NM_001000588.1	NM_001000588.1		366799	47575974	NM_001000588.1	Olr927	NP_001000588.1	ILMN_1373583	0001190687	S	415	CCTCTGCGGATGGGCCCTTCTGTCTGTTTGAAATTGGCTGGTGCATCCTG	7	-	4241020-4241069	7q11	Rattus norvegicus olfactory receptor 927 (Olr927), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr927	Olr927
Rattus norvegicus	RefSeq	GI_62078786-S	ILMN_284561	FAM108B1	NM_001014028.1	NM_001014028.1		309399	62078786	NM_001014028.1	Fam108b1	NP_001014050.1	ILMN_1355677	0005080121	S	1049	GCCTCTGTGGGTTGAAGGGGCAGGACACAATGATGTGGAGCTGTATGGAC	1	+	224920982-224921031	1q51	Rattus norvegicus family with sequence similarity 108, member B1 (Fam108b1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654258-S	ILMN_48117	TUSC4_PREDICTED	XM_343475.2	XM_343475.2		363138	62654258	XM_343475.2	Tusc4_predicted	XP_343476.1	ILMN_1349675	0004150193	S	1174	GATCTGCTGCAAGACAGGCATGAGCTACCATGAGCTGGACGAGCGACTAG				8q32	PREDICTED: Rattus norvegicus tumor suppressor candidate 4 (predicted) (Tusc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527588-S	ILMN_292839	YIPF4	NM_001009712.1	NM_001009712.1		362699	57527588	NM_001009712.1	Yipf4	NP_001009712.1	ILMN_1372650	0002100022	S	808	TGGCGTGTTTTGGGCTGCCTACAGTGCTGCTTCATTACTTGTAGGTGAAG	6	-	20886482-20886531	6q12	Rattus norvegicus Yip1 domain family, member 4 (Yipf4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1310157; MGC95126	RGD1310157; MGC95126
Rattus norvegicus	RefSeq	GI_62657229-S	ILMN_50205	WNT9B_PREDICTED	XM_221015.4	XM_221015.4		303586	109489154	XM_221015.4	Wnt9b_predicted	XP_221015.4	ILMN_1370258	0003940332	S	1038	CAGCAAGTACTCTCCGGGCACAGCAGGCAGGGTGTGTTCTCGGGACACAA	10	-	92883694-92883743	10q32.1	PREDICTED: Rattus norvegicus wingless related MMTV integration site 9B (predicted) (Wnt9b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660536-S	ILMN_56428	LOC498381	XM_573616.1	XM_573616.1		498381	62660536	XM_573616.1	LOC498381	XP_573616.1	ILMN_1357563	0003130750	S	588	AGGATAATAGGTATAGATAATAGGAGTGAAGACTCCCAGCTCAAAGGACC					PREDICTED: Rattus norvegicus similar to ORF1 (LOC498381), mRNA.					
Rattus norvegicus	RefSeq	GI_41281650-A	ILMN_265303	CSPG5	NM_133652.1	NM_133652.1		50568	41281650	NM_133652.1	Cspg5	NP_598413.1	ILMN_1376725	0005670692	A	1564	AGCGCTCCCCACAAAATCCAGGAAGCTCTCAAGTCCCGCCTGAAGGAGGA	8	+	114634822-114634871	8q32	Rattus norvegicus chondroitin sulfate proteoglycan 5 (Cspg5), transcript variant 2, mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence IEA]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence ISS]	The regrowth of axons following their loss or damage [goid 31103] [evidence IEP]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ngc; Caleb	Ngc; Caleb
Rattus norvegicus	RefSeq	GI_62651144-S	ILMN_263635	RGD1311756_PREDICTED	XM_001065046.1	XM_001065046.1		362769	109479858	XM_001065046.1	RGD1311756_predicted	XP_001065046.1	ILMN_1356092	0001850066	S	2059	TCGAAGTGGAGTCTCGGGCATCGTGGGCATGGAAGTGGATGGGTTGCCTT				6q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20950 (predicted) (RGD1311756_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605813-S	ILMN_266593	PITPNM1	NM_001008369.1	NM_001008369.1		361694	56605813	NM_001008369.1	Pitpnm1	NP_001008370.1	ILMN_1363899	0004210397	S	3869	TGGCCAGGGGCAAGACTCGAAGCATCAGCCTCAAGCTAGACAGTGAAGAG	1	+	206697187-206697236	1q42	Rattus norvegicus phosphatidylinositol transfer protein, membrane-associated 1 (Pitpnm1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. A droplet of triacylglycerol surrounded by a monolayer of phospholipids, interacting with the triacylglycerols and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins [goid 12511] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC95131; Pitpnm	MGC95131; Pitpnm
Rattus norvegicus	RefSeq	GI_17432903-S	ILMN_283732	ERBB3	NM_017218.2	NM_017218.2		29496	17432903	NM_017218.2	Erbb3	NP_058914.2	ILMN_1353005	0004070541	S	4079	AAGCCACCGACTCTGCCTTCGACAACCCCGATTACTGGCACAGCAGGCTT	7	-	1858148-1858197	7q11	Rattus norvegicus v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) (Erbb3), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence TAS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEP]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14037] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14037] [evidence IEA]; The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions [goid 21545] [evidence ISS]; The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions [goid 21545] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; The process whose specific outcome is the progression of the tongue over time, from its formation to the mature structure. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43586] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence TAS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein [goid 30296] [evidence IEA]; Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein [goid 30296] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643411	ILMN_69320	LOC499608	XM_574934.1	XM_574934.1		499608	62643411	XM_574934.1	LOC499608	XP_574934.1	ILMN_1650837	0003710520	S	2544	GCTTAGCGTACCAGATGAAGGACCTCTCCTTGGAAAAATTACAGCCATCC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC499608), mRNA.					
Rattus norvegicus	RefSeq	GI_62659059-S	ILMN_266664	RUTBC2_PREDICTED	XM_001080492.1	XM_001080492.1		288743	109497522	XM_001080492.1	Rutbc2_predicted	XP_001080492.1	ILMN_1364504	0007040131	S	3123	ATGACGTCTTCTCCGTGTGGGAGACTATCTGGGCGGCTAAGCACGTGTCC				12q16	PREDICTED: Rattus norvegicus RUN and TBC1 domain containing 2 (predicted) (Rutbc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641430-S	ILMN_62925	RGD1566132_PREDICTED	XM_577831.2	XM_577831.2		502360	109459175	XM_577831.2	RGD1566132_predicted	XP_577831.2	ILMN_1374015	0000540592	S	1093	GCCTGGCTCCTGGGAGTAAATGATGGACTGTGTGCTCAACCTCAACTTCA	1	-	162142893-162142942	1q32	PREDICTED: Rattus norvegicus similar to Tripartite motif protein 30-like (predicted) (RGD1566132_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667488-S	ILMN_279059	MGC114529	NM_001025713.1	NM_001025713.1		317590	71043675	NM_001025713.1	MGC114529	NP_001020884.1	ILMN_1362664	0004570070	S	1401	CAGTCTGGTATGAAGAGGCTTTGAGAGATGAGGAAGAAAGGGCCTGGGCC	X	+	147904032-147904081	Xq36	Rattus norvegicus similar to melanoma antigen family A, 10 (MGC114529), mRNA.					
Rattus norvegicus	RefSeq	GI_62650630	ILMN_69337	LOC366604	XM_576019.1	XM_576019.1		366604	62650630	XM_576019.1	LOC366604	XP_576019.1	ILMN_1650264	0000450484	S	646	AGGGCAGTGGTTACGGCGGGAGTGGCAGCTATACAATGGAGGAGTCAGTC					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC366604), mRNA.					
Rattus norvegicus	RefSeq	GI_62717856-S	ILMN_52281	LOC287866	XM_213536.3	XM_213536.3		287866	62717856	XM_213536.3	LOC287866	XP_213536.3	ILMN_1365275	0004560411	S	351	GCGTTTTGGGAGGGGGAACGTCGATTGTTCACTTGTGTTCTTCTACCTAC					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC287866), mRNA.					
Rattus norvegicus	RefSeq	GI_62664983-S	ILMN_48499	LOC296782	XM_216075.3	XM_216075.3		296782	62664983	XM_216075.3	LOC296782	XP_216075.3	ILMN_1371616	0001580402	S	645	ACCAGCAACATCCAGACCCAGCATCATCTGGTAGGAACCAGCAGCTGTGT				19q11	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC296782), mRNA.					
Rattus norvegicus	RefSeq	GI_24475710-S	ILMN_293781	ITPR2	NM_031046.3	NM_031046.3		81678	24475710	NM_031046.3	Itpr2	NP_112308.1	ILMN_1364230	0001190156	S	10189	CCGTGGCTTCCTCCTGTGGGAACTATCCAAAAGATTTCACCTAACGAGAC	4	-	183677899-183677948	4q44	Rattus norvegicus inositol 1,4,5-triphosphate receptor 2 (Itpr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA];  [goid 5220] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Combining with inositol-1,4,5-triphosphate to initiate a change in cell activity [goid 8095] [evidence ISS];  [goid 15278] [evidence ISS]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647153-S	ILMN_273605	CUL1_PREDICTED	XM_001069456.1	XM_001069456.1		362356	109473391	XM_001069456.1	Cul1_predicted	XP_001069456.1	ILMN_1364685	0005420593	S	2774	CAATACATTGGCTCCCTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAG				4q24	PREDICTED: Rattus norvegicus cullin 1 (predicted) (Cul1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577862-S	ILMN_283802	OLR1191	NM_001000981.1	NM_001000981.1		405336	47577862	NM_001000981.1	Olr1191	NP_001000981.1	ILMN_1364364	0001500113	S	321	TTCGGGCATGGACACATTCCTCCTCTCTGTGATGGCCTATGACCGATTTG	8	+	19279578-19279627	8q13	Rattus norvegicus olfactory receptor 1191 (Olr1191), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654407-S	ILMN_55379	RGD1565180_PREDICTED	XM_343497.3	XM_343497.3		363158	109484050	XM_343497.3	RGD1565180_predicted	XP_343498.2	ILMN_1355874	0005290176	S	611	CCATCGCTGCCGCTCACACCTACCTTCTGAAACATCCTGAGGACGAGATG	8	-	118769830-118769879	8q32	PREDICTED: Rattus norvegicus similar to Cartilage-associated protein precursor (predicted) (RGD1565180_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648630-S	ILMN_293428	RGD1310592_PREDICTED	XR_008816.1	XR_008816.1		297823	109476123	XR_008816.1	RGD1310592_predicted		ILMN_1354798	0005220070	S	2802	CAGCAGCTCTTCACTATTACCTCCAGGCAGGGGCTGTGTGCTCTGACTTC				5q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810013E07 (predicted) (RGD1310592_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655864-S	ILMN_297055	RGD1565744_PREDICTED	XM_001059638.1	XM_001059638.1		360494	109490395	XM_001059638.1	RGD1565744_predicted	XP_001059638.1	ILMN_1367460	0005420102	S	838	CTGATGAGTCAGAGGACCACAGTGAGGATTCTGGGGAGGACAGTGATGAG				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610007P22 (predicted) (RGD1565744_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656466-S	ILMN_265253	POLR2A_MAPPED	XM_001079162.1	XM_001079162.1		363633	109491095	XM_001079162.1	Polr2a_mapped	XP_001079162.1	ILMN_1372495	0000070458	S	6266	ACCTACAGCCTCACCAGTCCAGCCATCAGCCCAGAAGACAGCGATGAGGA				10q24	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide A (mapped) (Polr2a_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_13259379-S	ILMN_272751	GRID1	NM_024378.1	NM_024378.1		79219	13259379	NM_024378.1	Grid1	NP_077354.1	ILMN_1367835	0004810494	S	3187	CTGCCCGCCACCCAGCCCACCCGACCAGCAGAGCTTTTTAATACAAGAAA				16p15	Rattus norvegicus glutamate receptor, ionotropic, delta 1 (Grid1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642855-S	ILMN_280531	LOC683813	XM_001067603.1	XM_001067603.1		683813	109465922	XM_001067603.1	LOC683813	XP_001067603.1	ILMN_1352384	0006040215	S	400	CAAGCCCACCATTGCTCAGGATGATGGAGTCTTAAAGGCTGATGAAGGTT					PREDICTED: Rattus norvegicus similar to peroxiredoxin 1 (LOC683813), mRNA.					
Rattus norvegicus	RefSeq	GI_61557277-S	ILMN_266760	CCNDBP1	NM_001013204.1	NM_001013204.1		362201	61557277	NM_001013204.1	Ccndbp1	NP_001013222.1	ILMN_1359503	0004570114	S	1155	TCAGTGTCTGCTTTCGGAAGTGGAGCTGTGACAGGGTGTTTGCTGGATGG	3	+	107800530-107800579	3q35	Rattus norvegicus cyclin D-type binding-protein 1 (Ccndbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109078	MGC109078
Rattus norvegicus	RefSeq	GI_62645236-S	ILMN_286638	RGD1561394_PREDICTED	XM_001059755.1	XM_001059755.1		311743	109470055	XM_001059755.1	RGD1561394_predicted	XP_001059755.1	ILMN_1361053	0005390044	S	1300	GCTCATGGGCTTTGGGGATGTCTTCTCAATGAACAAAGCAGGAGCTGTGC				3q22	PREDICTED: Rattus norvegicus similar to MLTK-beta (predicted) (RGD1561394_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660530-S	ILMN_56144	LOC305375	XM_223442.3	XM_223442.3		305375	62660530	XM_223442.3	LOC305375	XP_223442.3	ILMN_1372317	0004810086	S	920	TAGTTTCTTTGCCTCGGGCTCGGATGCAGGCACGCTTCCCGCTGTTCAGA				14q11	PREDICTED: Rattus norvegicus similar to Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 (LOC305375), mRNA.					
Rattus norvegicus	RefSeq	GI_11067424-S	ILMN_271583	SNF1LK	NM_021693.1	NM_021693.1		59329	11067424	NM_021693.1	Snf1lk	NP_067725.1	ILMN_1365302	0002370053	S	3866	CGGCCCTGTGCTGGGCTGTAATGGGATCGCCTATTTAAAGACACTACCGT	20	-	10280376-10280425	20p12	Rattus norvegicus SNF1-like kinase (Snf1lk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the rate or extent of progress through the mitotic cell cycle [goid 7346] [evidence ISS]; Any process that modulates the rate or extent of progress through the mitotic cell cycle [goid 7346] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Sik	Sik
Rattus norvegicus	RefSeq	GI_62653255-S	ILMN_66607	LOC363018	XM_343351.2	XM_343351.2		363018	62653255	XM_343351.2	LOC363018	XP_343352.2	ILMN_1352110	0000770601	S	7223	GGCGGACCAACCCACAGTGGCATCTTCAGCTATACCAGGTAGTTTGGGGG				8q12	PREDICTED: Rattus norvegicus similar to KIAA1731 protein (predicted) (LOC363018), mRNA.					
Rattus norvegicus	RefSeq	GI_62662364-S	ILMN_267894	RGD1561342_PREDICTED	XM_001067921.1	XM_001067921.1		498599	109503910	XM_001067921.1	RGD1561342_predicted	XP_001067921.1	ILMN_1374256	0004060142	S	968	CGTCAGACCTAAGCAACAGAGAGCACTTGCGGAGCCCGATGGAAAAGCCC				16p14	PREDICTED: Rattus norvegicus similar to hypothetical protein 6030458H05 (predicted) (RGD1561342_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656173-S	ILMN_52386	ALKBH5_PREDICTED	XM_220525.4	XM_220525.4		303193	109488241	XM_220525.4	Alkbh5_predicted	XP_220525.2	ILMN_1371119	0006590594	S	1493	GTCTGTGCTTCTGCCCACACACCGGCGGAGAGGGAGTTTTAGCTCTGAGA	10	+	46831944-46831993	10q22	PREDICTED: Rattus norvegicus alkB, alkylation repair homolog 5 (E. coli) (predicted) (Alkbh5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660001-S	ILMN_62252	LOC498314	XM_573541.1	XM_573541.1		498314	62660001	XM_573541.1	LOC498314	XP_573541.1	ILMN_1350819	0002360537	S	26	TGCCCACTTTACCCGCTGTAAGACTTGTAAGCTCAGGAAGCCCCAGGAGC					PREDICTED: Rattus norvegicus similar to HMG-box transcription factor TCF-3 (LOC498314), mRNA.					
Rattus norvegicus	RefSeq	GI_62664411-S	ILMN_263870	RGD1564528_PREDICTED	XM_001057092.1	XM_001057092.1		361327	109507324	XM_001057092.1	RGD1564528_predicted	XP_001057092.1	ILMN_1364166	0000110546	S	1081	CAGAAGACCATCCTGAGGAAATCCACCACTACCACCGTGTGATGTCTGCC				18q11	PREDICTED: Rattus norvegicus similar to mesenchymal stem cell protein DSC54 (predicted) (RGD1564528_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14091749-S	ILMN_280450	HSD17B12	NM_032066.1	NM_032066.1		84013	14091749	NM_032066.1	Hsd17b12	NP_114455.1	ILMN_1372600	0006660114	S	1589	GGGCCCAAGTGTACATCAAGACCAGCAACATCCTGTGGTACTGTGGGATC	3	-	78436807-78436856	3q31	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 12 (Hsd17b12), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656301-S	ILMN_59124	RGD1559617_PREDICTED	XM_213347.4	XM_213347.4		287429	109488366	XM_213347.4	RGD1559617_predicted	XP_213347.1	ILMN_1355746	0004560154	S	290	ACCCCAAAACGCTCTTAGGAAGTTTAAGGCCCAAAGGAGGTCCCAGGGCC	10	+	56190353-56190402	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC14151 (predicted) (RGD1559617_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718423-S	ILMN_59283	LOC367544	XM_578884.1	XM_578884.1		367544	62718423	XM_578884.1	LOC367544	XP_578884.1	ILMN_1374641	0003440605	S	547	CCAGAGCTTCACAAGTCGGCTCAGTCCTTTTGGAGCCTGACAGGTTTCCG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367544), mRNA.					
Rattus norvegicus	RefSeq	GI_62661940-S	ILMN_69806	LOC502005	XM_577433.1	XM_577433.1		502005	62661940	XM_577433.1	LOC502005	XP_577433.1	ILMN_1357458	0006620184	S	33	GGGAGCCCCCAGGAATCTTATGTTCTTGAGAATCAGAGAGCAGGAGGTCA					PREDICTED: Rattus norvegicus similar to granzyme C (LOC502005), mRNA.					
Rattus norvegicus	RefSeq	GI_47577000	ILMN_270212	OLR784	NM_001000604.1	NM_001000604.1		404793	47577000	NM_001000604.1	Olr784	NP_001000604.1	ILMN_1650932	0006980086	S	867	CAGGAACAAGGAGATGAAGGCAGCAATGAGGAAACTCTGCTCCCAGGTTG	3	-	97599160-97599209	3q34	Rattus norvegicus olfactory receptor 784 (Olr784), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr784	Olr784
Rattus norvegicus	RefSeq	GI_62663048-S	ILMN_69807	LOC361188	XM_341470.3	XM_341470.3		361188	109503650	XM_341470.3	LOC361188	XP_341471.3	ILMN_1370710	0004480484	S	507	GCATCTCTCTGAGGAACTGGATGCATGGAGAGCTTGCACACAGTCCACCA	16|NW_047481.1	-	137362-137411		PREDICTED: Rattus norvegicus similar to WD repeat domain 17 (LOC361188), mRNA.					
Rattus norvegicus	RefSeq	GI_62654734-S	ILMN_49784	TDRD6_PREDICTED	XM_236991.4	XM_236991.4		316254	109485828	XM_236991.4	Tdrd6_predicted	XP_236991.4	ILMN_1351756	0001170142	S	6577	TCGGATGACACCACCATCGAAGAGGAGGAGTGCGGAGGTGACGCAGATTC	9	+	13053224-13053245:13054575-13054602	9q12	PREDICTED: Rattus norvegicus tudor domain containing 6 (predicted) (Tdrd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639568-S	ILMN_264546	RGD1306235_PREDICTED	XM_001080148.1	XM_001080148.1		361560	109461787	XM_001080148.1	RGD1306235_predicted	XP_001080148.1	ILMN_1366621	0002470133	S	1772	CAGGCCGTGCGGTGTGCATGGGGCGCCAAGTTCTTCACGGCAATGTATTT				1q22	PREDICTED: Rattus norvegicus similar to contains transmembrane (TM) region (predicted) (RGD1306235_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650224-S	ILMN_48871	LOC503005	XM_578518.1	XM_578518.1		503005	62650224	XM_578518.1	LOC503005	XP_578518.1	ILMN_1364697	0003830440	S	2416	GCACAAGAGTTGTCAAAGCCACTCAGCCCCTGGCAGCCTTTTCCCTCTCC					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC503005), mRNA.					
Rattus norvegicus	RefSeq	GI_62652827-S	ILMN_277842	NFAM1_PREDICTED	XM_001077695.1	XM_001077695.1		362966	109482641	XM_001077695.1	Nfam1_predicted	XP_001077695.1	ILMN_1354072	0001170193	S	713	TCAGTGTCCTGGGTGTGCTGGGCACGGCGCTGCTGTTCTGGAAGAAGAAA				7q34	PREDICTED: Rattus norvegicus NFAT activating protein with ITAM motif 1 (predicted) (Nfam1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641097-S	ILMN_69403	LOC499235	XM_574528.2	XM_574528.2		499235	109459206	XM_574528.2	LOC499235	XP_574528.1	ILMN_1363892	0005220324	S	383	GGGAGGAGGTTTCAAAAAATCAGGCCCTTAAACTTGAGCTAGACAACCAG	1	-	165181703-165181752	1q33	PREDICTED: Rattus norvegicus LRRGT00141 (LOC499235), mRNA.		Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of global transcription from an RNA polymerase II promoter [goid 45817] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62717938-S	ILMN_279375	LOC302228	XM_229842.3	XM_229842.3		302228	62717938	XM_229842.3	LOC302228	XP_229842.3	ILMN_1368062	0000060148	S	645	AGATCAATGTGTGCAGTTCACCAGAAGCGATGCATCCAAAAAGATCGGCG	Un|NW_047853.1	-	500060-500109		PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC302228), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62665590-S	ILMN_275620	RT1-S3	XM_001072449.1	XM_001072449.1		294228	109509681	XM_001072449.1	RT1-S3	XP_001072449.1	ILMN_1371428	0006130433	S	2799	CGACGCTGAGCCAAGGGATATCTGGCATCTGCAACTCCTTTTCCGTAGGC				20p12	PREDICTED: Rattus norvegicus RT1 class Ib, locus S3 (RT1-S3), mRNA.					
Rattus norvegicus	RefSeq	GI_61740634-S	ILMN_278791	RRAS2	NM_001013434.1	NM_001013434.1		365355	61740634	NM_001013434.1	Rras2	NP_001013452.1	ILMN_1353549	0006660092	S	1838	CTGTTCACCGTTAGCTGACAAAGAGAACGTGGAAGCCACGGCGACCATGG	1	-	172026631-172026680	1q34	Rattus norvegicus related RAS viral (r-ras) oncogene homolog 2 (Rras2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109327	MGC109327
Rattus norvegicus	RefSeq	GI_62656907-A	ILMN_274085	SCRN2	NM_001012142.1	NM_001012142.1		360612	58865853	NM_001012142.1	Scrn2	NP_001012142.1	ILMN_1376732	0006980056	S	1272	GGCAGCCTCTTCCAGGCCTTTGTGGAGAGGGAGCACCAGGTCTATGCTTA	10	+	85756408-85756457	10q31	Rattus norvegicus secernin 2 (Scrn2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648740-S	ILMN_61430	LOC313111	XM_232840.3	XM_232840.3		313111	62648740	XM_232840.3	LOC313111	XP_232840.3	ILMN_1358977	0001690040	S	1981	GGCTGGGTCTTGGATGTAAGCAGAGAAGGCAAAGAGGAGGTGTTCTACGG				5q21	PREDICTED: Rattus norvegicus similar to KIAA1900 protein (predicted) (LOC313111), mRNA.					
Rattus norvegicus	RefSeq	GI_62662688-S	ILMN_262887	LOC290763	XM_001063127.1	XM_001063127.1		290763	109504214	XM_001063127.1	LOC290763	XP_001063127.1	ILMN_1360387	0001570242	S	2307	CACCTCCAGTGATCCATTCACATTCTAGTTGGGGTTTATTCTTTGTCGCG				16q12.1	PREDICTED: Rattus norvegicus similar to testase 4 (LOC290763), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660459-I	ILMN_49136	LIAS_PREDICTED	XM_573596.1	XM_573596.1		305348	62660459	XM_573596.1	Lias_predicted	XP_573596.1	ILMN_1376103	0000050068	S	1460	GATGGCGGAACCGCTCTCTGGCTCTCTGAAACAACTCTGTCAGCCATGAG				14p11	PREDICTED: Rattus norvegicus lipoic acid synthetase (predicted) (Lias_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660459-S	ILMN_49136	LIAS_PREDICTED	XM_573596.1	XM_573596.1		305348	62660459	XM_573596.1	Lias_predicted	XP_573596.1	ILMN_2040743	0000780639	I	1274	TCATCTGAAGCTACACTGAACGGAGCCTCATGGGCGGAAGGGAGTGCGCC				14p11	PREDICTED: Rattus norvegicus lipoic acid synthetase (predicted) (Lias_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718692-S	ILMN_292893	LOC367632	XM_346234.2	XM_346234.2		367632	62718692	XM_346234.2	LOC367632	XP_346235.2	ILMN_1356917	0002630093	S	641	AGCCTTCTGGGGAGTTCACCAAGTTTGATGGGGACATCCACATCTACGGC	Un|NW_047943.1	-	30926-30975		PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367632), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62646731-S	ILMN_55837	LOC502712	XM_578211.1	XM_578211.1		502712	62646731	XM_578211.1	LOC502712	XP_578211.1	ILMN_1355593	0002230390	S	595	GGCCACAGCAGTTTGGCATGTCACTTTTCCTCCCCCACGCTGTTTTGTGG					PREDICTED: Rattus norvegicus similar to Solute carrier family 40, member 1 (Ferroportin 1) (Iron-regulated transporter 1) (MSTP079) (LOC502712), mRNA.					
Rattus norvegicus	RefSeq	GI_19705488-S	ILMN_281987	UST5R	NM_134380.1	NM_134380.1		171398	19705488	NM_134380.1	Ust5r	NP_599207.1	ILMN_1365785	0006550113	S	1500	GCAGATCCTGCGTATTACTGTGGTTACATTGGCAGGAGCATTTTCTGCTC	1	-	210762836-210762885	1q43	Rattus norvegicus integral membrane transport protein UST5r (Ust5r), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	MGC114265	MGC114265
Rattus norvegicus	RefSeq	GI_13929193-S	ILMN_271600	SULT1A1	NM_031834.1	NM_031834.1		83783	13929193	NM_031834.1	Sult1a1	NP_114022.1	ILMN_1353876	0000070722	S	1073	TAGGATTGGGGATGTGGCTGAGGCAGAGGGTTTTATCAACGCATGTCAGG	1	-	185829304-185829353	1q36	Rattus norvegicus sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 (Sult1a1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IDA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 8210] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEP]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence IDA]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence TAS]; The chemical reactions and pathways involving 4-nitrophenol, a nitroaromatic compound which is used in the production of dyes, leather treatment agents, fungicides and as an intermediate in the production of the insecticide parathion [goid 18960] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IMP]; The addition of a sulfate group to a molecule [goid 51923] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence IDA]; Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IDA]; Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with 3'-phosphoadenosine 5'-phosphosulfate (PAPS), a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems [goid 50656] [evidence IDA]	St1a1; ASTIV; Mx-ST; Stm; PST-1; Stp1; Sult1a3	St1a1; ASTIV; Mx-ST; Stm; PST-1; Stp1; Sult1a3
Rattus norvegicus	RefSeq	GI_62653724	ILMN_67336	PTPN9	XM_236280.3	XM_236280.3		266611	62653724	XM_236280.3	Ptpn9	XP_236280.3	ILMN_1651176	0006040725	S	949	GGCACTGGACTAATCGTTGTGTTCTTCCCTGCCGAGGACCACTTCTCTGG				8q24	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 9 (Ptpn9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645707-S	ILMN_297935	RGD1563348_PREDICTED	XR_008616.1	XR_008616.1		502642	109470184	XR_008616.1	RGD1563348_predicted		ILMN_1374127	0003850131	S	56	ACAAGCGCGAGAAACTGGCGGAGGGCGCGGCCGTGGTCATTGAGCATTGT				3q24	PREDICTED: Rattus norvegicus similar to Selenoprotein H (predicted) (RGD1563348_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718022-S	ILMN_269279	LOC301113	XM_001059684.1	XM_001059684.1		301113	109486592	XM_001059684.1	LOC301113	XP_001059684.1	ILMN_1365677	0006510324	S	1240	CAGGTCTCCATGGTGGGTCTGCTTCGACACATCCTATCCCAGGAGGGTGT					PREDICTED: Rattus norvegicus similar to solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 (LOC301113), mRNA.					
Rattus norvegicus	RefSeq	GI_34875110-S	ILMN_271927	RGD1559574_PREDICTED	XR_007987.1	XR_007987.1		305930	109502511	XR_007987.1	RGD1559574_predicted		ILMN_1361841	0000050735	S	352	AGTGGAGTAAGCCCAAAGGTGCGCGAGGTGTTGCAGCTGCTTCGTCTCCG				15p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (predicted) (RGD1559574_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654342-S	ILMN_52300	RGD1307150_PREDICTED	XM_217268.3	XM_217268.3		301016	109483972	XM_217268.3	RGD1307150_predicted	XP_217268.1	ILMN_1374017	0007000092	S	493	CGAAGATACCCAATTCGGGAGACAGGGTCTGGCGTTCAGTGGTAGAGTGC	8	+	114202002-114202051	8q32	PREDICTED: Rattus norvegicus similar to Esophagus cancer-related gene-2 protein precursor (ECRG-2) (predicted) (RGD1307150_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660693-S	ILMN_50041	LOC497699	XM_579700.1	XM_579700.1		497699	62660693	XM_579700.1	LOC497699	XP_579700.1	ILMN_1364219	0002690546	S	2916	GATGACAGACTGGAGACCTGGGTCGTTCATCTGACCATGGGATGTTTTTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_173147 (LOC497699), mRNA.					
Rattus norvegicus	RefSeq	GI_62642379-S	ILMN_61595	PEO1_PREDICTED	XM_219939.4	XM_219939.4		309441	109460171	XM_219939.4	Peo1_predicted	XP_219939.1	ILMN_1357847	0006660671	S	2577	CAACAAGAGTTCCCTTACCTTCTCCATCCCACCTAAGAGCAAAGCCCGAC	1	+	250078720-250078769	1q54	PREDICTED: Rattus norvegicus progressive external ophthalmoplegia 1 homolog (human) (predicted) (Peo1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981047-S	ILMN_266914	HSD17B1	NM_012851.1	NM_012851.1		25322	6981047	NM_012851.1	Hsd17b1	NP_036983.1	ILMN_1355091	0000780102	S	1222	GTGCAAACATCTTCATGGGTCAAGATAAGAGGGCTGTAGTCGGGGTTGGG	10	+	90096249-90096298	10q32.1	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 1 (Hsd17b1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 6703] [evidence NAS]; The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 6703] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence TAS]; Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	17BHD1	17BHD1
Rattus norvegicus	RefSeq	GI_62656083-S	ILMN_70303	RAPGEF6_PREDICTED	XM_220428.3	XM_220428.3		303141	62656083	XM_220428.3	Rapgef6_predicted	XP_220428.3	ILMN_1351828	0006400397	S	6011	GAGGCCGGAATCTGAACTCACAGACAGGGGGAGCAATCTGACCCCAAAAG				10q22	PREDICTED: Rattus norvegicus Rap guanine nucleotide exchange factor (GEF) 6 (predicted) (Rapgef6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659691-I	ILMN_64474	CDCA1_PREDICTED	XM_573495.1	XM_573495.1		304951	62659691	XM_573495.1	Cdca1_predicted	XP_573495.1	ILMN_1375974	0003710673	S	1789	TGTCCCTACTCTGTCTCCTTTTGTATGTGCTGGTTGGAATAAACAAATAG				13q24	PREDICTED: Rattus norvegicus cell division cycle associated 1 (predicted) (Cdca1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786157-S	ILMN_265712	PSMD4	NM_031331.1	NM_031331.1		83499	13786157	NM_031331.1	Psmd4	NP_112621.1	ILMN_1353983	0001410403	S	1068	CAGGACCCAGAGTTCCTTCAGAGCGTCCTAGAGAACCTTCCCGGTGTGGA	2	-	189933377-189933426	2q34	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 (Psmd4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; The directed movement of substances that are in liquid form in normal living conditions into, out of, within or between cells [goid 42044] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657209-S	ILMN_49130	LOC360645	XM_340922.2	XM_340922.2		360645	62657209	XM_340922.2	LOC360645	XP_340923.2	ILMN_1355418	0002360044	S	823	TGGGTATCTCCGTGTACTCCAGGGGCCTGAGGGTGTCTCCGGGTTCTCCA				10q32.1	PREDICTED: Rattus norvegicus similar to clone HQ0477 PRO0477p (predicted) (LOC360645), mRNA.					
Rattus norvegicus	RefSeq	GI_62647820-S	ILMN_62054	LOC497789	XM_579570.1	XM_579570.1		497789	62647820	XM_579570.1	LOC497789	XP_579570.1	ILMN_1367223	0003780021	S	2565	CCCCACTTACTTGGGGAAGGATGTCTGCTGTGGTTCCAGAGTAGGAGTCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053671 (LOC497789), mRNA.					
Rattus norvegicus	RefSeq	GI_34882702-S	ILMN_60155	LOC363380	XM_343715.2	XM_343715.2		363380	62718437	XM_343715.2	LOC363380	XP_343716.2	ILMN_1362469	0004730373	S	26	CTCTCAGTGCCAGGGGTCCTATAATAGTTTTGGTAGGAAGGCATCATCCC					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC363380), mRNA.					
Rattus norvegicus	RefSeq	GI_62718437-S	ILMN_60155	LOC363380	XM_343715.2	XM_343715.2		363380	62718437	XM_343715.2	LOC363380	XP_343716.2	ILMN_1371698	0002340017	S	485	GCCAGAATGATCATCTGTGCCCCCAGTGCCAAGCAACAGCAGGTCTGAAA					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC363380), mRNA.					
Rattus norvegicus	RefSeq	GI_62655996-S	ILMN_65950	LOC497889	XM_573074.1	XM_573074.1		497889	62655996	XM_573074.1	LOC497889	XP_573074.1	ILMN_1359671	0000580746	S	320	TTCTGGGACAGACTCCTCTTTACCCATCAGCAGCGCTGGAAGAGTCCAGC					PREDICTED: Rattus norvegicus similar to T-cell immunoglobulin and mucin domain containing 2 (LOC497889), mRNA.					
Rattus norvegicus	RefSeq	GI_62660826-S	ILMN_264805	RGD1308957_PREDICTED	XM_001054111.1	XM_001054111.1		364204	109501015	XM_001054111.1	RGD1308957_predicted	XP_001054111.1	ILMN_1371097	0004560193	S	904	GCACTCCACCTCCAGCCCTCAAGCGGTAGCCAAAATCCCCAAGCAAAGTC					PREDICTED: Rattus norvegicus similar to cDNA sequence BC027127; 9330184N17Rik (predicted) (RGD1308957_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643871-S	ILMN_266577	POGZ_PREDICTED	XM_001053667.1	XM_001053667.1		310658	109467143	XM_001053667.1	Pogz_predicted	XP_001053667.1	ILMN_1366398	0000940400	S	4383	CAGTTCTGAGCCGAGGAGCTGGCCCATTGGTTACTCCTGCTAAAACCATG				2q34	PREDICTED: Rattus norvegicus pogo transposable element with ZNF domain (predicted), transcript variant 2 (Pogz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664892-A	ILMN_269541	CES3	NM_133295.2	NM_133295.2		113902	31542379	NM_133295.2	Ces3	NP_579829.2	ILMN_1376983	0000610113	S	1644	GAGCTCAGGGCCAAGGAGGCAGCAGAGGAACCATCCCACTGGAAACATGT	19	+	14966834-14966883	19p11	Rattus norvegicus carboxylesterase 3 (Ces3), mRNA.	The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence NAS]		Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IMP]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence TAS]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655904-S	ILMN_61088	LOC497876	XM_573060.2	XM_573060.2		497876	109487924	XM_573060.2	LOC497876	XP_573060.2	ILMN_1370863	0004850129	S	773	AGAGGCTTCTGGAGGAAAAGGACCCTGTGCCCCTGTTCAAGGTCTACGTA	10	+	15396472-15396491:15396928-15396957	10q12	PREDICTED: Rattus norvegicus similar to 39S ribosomal protein L28, mitochondrial precursor (L28mt) (MRP-L28) (LOC497876), mRNA.					
Rattus norvegicus	RefSeq	GI_62339292-S	ILMN_276584	PCDHB14_PREDICTED	XM_001055753.1	XM_001055753.1		291647	109506483	XM_001055753.1	Pcdhb14_predicted	XP_001055753.1	ILMN_1363596	0003140112	S	2496	CAGTACTTCCCAACTTCTTGAATGATGAAGGTTACAGGAACACGGAGGAG	18	+	30264605-30264654	18p11	PREDICTED: Rattus norvegicus protocadherin beta 14 (predicted) (Pcdhb14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928703-S	ILMN_283485	MYH10	NM_031520.1	NM_031520.1		79433	13928703	NM_031520.1	Myh10	NP_113708.1	ILMN_1358372	0004060725	S	7044	ATGCCATCTGCCTGAATGTTGACGCCAGTGGGCGTGTGCCCTCCATTTCC	10	+	55575508-55575557	10q24	Rattus norvegicus myosin, heavy chain 10, non-muscle (Myh10), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis [goid 30496] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence ISS]	A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells [goid 281] [evidence ISS]; A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells [goid 281] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress [goid 1778] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence NAS]; The formation of a cell surface protrusion, such as a lamellipodium or filopodium, at the leading edge of a migrating cell [goid 6930] [evidence ISS]; The directed movement of the nucleus [goid 7097] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; The process whose specific outcome is the progression of the fourth ventricle over time, from its formation to the mature structure. The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space [goid 21592] [evidence ISS]; The process whose specific outcome is the progression of the lateral ventricles over time, from the formation to the mature structure. The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle [goid 21670] [evidence ISS]; The process whose specific outcome is the progression of the third ventricle over time, from its formation to the mature structure. The third ventricle is the narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the hypothalamus, its anterior wall by the lamina terminalis, and its roof by ependyma, and it communicates with the fourth ventricle by the cerebral aqueduct, and with the lateral ventricles by the interventricular foramina [goid 21678] [evidence ISS]; The process whose specific outcome is the progression of the cerebellar Purkinje cell layer over time, from its formation to the mature structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells [goid 21680] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence ISS]; The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55015] [evidence ISS]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]	MCH-B; SMemb; NMMHC-B	MCH-B; SMemb; NMMHC-B
Rattus norvegicus	RefSeq	GI_34873075-S	ILMN_65351	GTPBP6_PREDICTED	XM_344118.2	XM_344118.2		363931	109496187	XM_344118.2	Gtpbp6_predicted	XP_344119.1	ILMN_1356965	0002850176	S	1475	AGGCCGCCTATGGCCGGTTCCAGAAGCTGTTCCCCACTGACATCACTTCT	12	+	46725903-46725952	12q16	PREDICTED: Rattus norvegicus GTP binding protein 6 (putative) (predicted) (Gtpbp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_35215294-S	ILMN_262827	SETL1	NM_194353.1	NM_194353.1		290432	35215294	NM_194353.1	Setl1	NP_919334.1	ILMN_1358811	0006550181	S	684	CCCCTTGCGGTCCTATTTGGTTCCCGATATGGGTGATGAAGGAGAGGCAG	15	-	81175741-81175790	15q21	Rattus norvegicus SET translocation-like 1 (Setl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]		Set	Set
Rattus norvegicus	RefSeq	GI_62666710-S	ILMN_269332	RGD1560898_PREDICTED	XM_001065803.1	XM_001065803.1		317395	109511636	XM_001065803.1	RGD1560898_predicted	XP_001065803.1	ILMN_1358430	0004070687	S	917	CTCCTCCAGCAGACAGGGAGCCAGAAGGAGTTGTAGATGGCCTGATAGGT				Xq14	PREDICTED: Rattus norvegicus similar to Spindlin-like (predicted) (RGD1560898_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34874128-S	ILMN_300874	RGD1308430_PREDICTED	XM_001054512.1	XM_001054512.1		361038	109502378	XM_001054512.1	RGD1308430_predicted	XP_001054512.1	ILMN_2040277	0006110367	S	517	ACCTGAACTGCCAGGGTAGTGGTCCACCGTTTATTCCAGCACCCAGGAGG				15p13	PREDICTED: Rattus norvegicus similar to 1700123O20Rik protein (predicted) (RGD1308430_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655832-S	ILMN_292364	ZFP598_PREDICTED	XM_001056388.1	XM_001056388.1		287119	109490330	XM_001056388.1	Zfp598_predicted	XP_001056388.1	ILMN_1356683	0004230278	S	3066	GACAGCTTCGGGTCCACTGGTGCTGGAGTCAGATGTCAAGTGTGTCGTGT				10q12	PREDICTED: Rattus norvegicus zinc finger protein 598 (predicted) (Zfp598_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657089-S	ILMN_64909	MEOX1_PREDICTED	XM_343970.3	XM_343970.3		363684	109489060	XM_343970.3	Meox1_predicted	XP_343971.3	ILMN_1353000	0005390053	S	693	TCAGCCCGTGTCCCCACAGGAGCAGGACCCAGAGGATGGAGACTCTGCAG	10	-	90922717-90922766	10q32.1	PREDICTED: Rattus norvegicus mesenchyme homeobox 1 (predicted) (Meox1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978506-S	ILMN_285289	ADM	NM_012715.1	NM_012715.1		25026	6978506	NM_012715.1	Adm	NP_036847.1	ILMN_1356203	0006900411	S	925	AGGGGTCTGAGCCACTGCCTTGCCCGCTCATAAACTGGTTTTCTCACGGG	1	+	168381964-168382013	1q33	Rattus norvegicus adrenomedullin (Adm), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IEP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The regrowth of neuronal processes such as axons or dendrites following their loss or damage [goid 31102] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of vasoconstriction [goid 45906] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of vasoconstriction [goid 45906] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	RATAP; Ap; H39316	RATAP; Ap; H39316
Rattus norvegicus	RefSeq	GI_62643135-S	ILMN_288855	ZFP458	NM_001024299.1	NM_001024299.1		499563	66730326	NM_001024299.1	Zfp458	NP_001019470.1	ILMN_1368512	0000050736	S	2748	GGAACTTCCCAGATTCTTTCTACTCATTTCATAGCCTGTTCTGGAGAGGA	2	+	86179351-86179400	2q23	Rattus norvegicus zinc finger protein 458 (Zfp458), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653032	ILMN_53658	RGD1309631_PREDICTED	XM_217044.3	XM_217044.3		300215	62653032	XM_217044.3	RGD1309631_predicted	XP_217044.2	ILMN_1649911	0006370575	S	1925	TCCTGCCTTTCCAGATGTAGCTGTGGCCTGAGTGTTGGAGCTCGGGGCTT				7q36	PREDICTED: Rattus norvegicus similar to lipocalin-interacting membrane receptor (predicted) (RGD1309631_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664148-S	ILMN_65974	MOCOS_PREDICTED	XM_341584.3	XM_341584.3		361300	109506378	XM_341584.3	Mocos_predicted	XP_341585.3	ILMN_1360285	0006840148	S	2487	TGGCGTGTACCTGATGCACTCGTCCTTGGATTTATCGTCTCCGTGTTTCC	18	+	16465861-16465910	18p12	PREDICTED: Rattus norvegicus molybdenum cofactor sulfurase (predicted) (Mocos_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54019437-S	ILMN_299294	PCDHAC1	NM_199509.1	NM_199509.1		393091	54019437	NM_199509.1	Pcdhac1	NP_955803.1	ILMN_1353684	0003450128	S	2272	CAAGCCTCTCTGGGACCTGGTTATGGTAGTAACAGCTTGCTCTTGCATGG	18	+	29828925-29828974	18p11	Rattus norvegicus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	rCNRvc1	rCNRvc1
Rattus norvegicus	RefSeq	GI_51243037-S	ILMN_273396	LY6G6D	NM_001001970.1	NM_001001970.1		415062	51243037	NM_001001970.1	Ly6g6d	NP_001001970.1	ILMN_1354223	0003870021	S	70	TGCTATGACTGCGGTGGAGGCCCCAGCAACTCCTGCAAGCAGACAGTGAT	20	+	3813451-3813500	20p12	Rattus norvegicus lymphocyte antigen 6 complex, locus G6D (Ly6g6d), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]			Ly6-D; G6d; Ng25	Ly6-D; G6d; Ng25
Rattus norvegicus	RefSeq	GI_62657709-S	ILMN_277537	LIPH_PREDICTED	XM_001067301.1	XM_001067301.1		288322	109493877	XM_001067301.1	Liph_predicted	XP_001067301.1	ILMN_1361597	0002060273	S	824	CATGTCGTTCCTACAGAGATTACAAGAGTGGTTTGTGTGTGGGCTGTGGG				11p11	PREDICTED: Rattus norvegicus lipase, member H (predicted) (Liph_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718304-S	ILMN_281608	LOC689084	XM_001058891.1	XM_001058891.1		689084	109513407	XM_001058891.1	LOC689084	XP_001058891.1	ILMN_1361419	0003170504	S	1008	ACTCATCCCAGGATTGTCTAGGCATCTTCAGAAGATAGAACAGCACTGAT	Un|NW_047883.1	+	317375-317424		PREDICTED: Rattus norvegicus hypothetical protein LOC689084 (LOC689084), mRNA.					
Rattus norvegicus	RefSeq	GI_57527533-S	ILMN_297152	RGD1359508	NM_001009707.1	NM_001009707.1		361941	57527533	NM_001009707.1	RGD1359508	NP_001009707.1	ILMN_1369607	0003190603	S	471	GTGTCCAGAGGAGAGACTCATTGGGAAGGTGAAGCTTTTCTTCCTTGGAG	2	+	128753295-128753344	2q26	Rattus norvegicus similar to protein C33A12.3 (RGD1359508), mRNA.				MGC109006	MGC109006
Rattus norvegicus	RefSeq	GI_16758125-S	ILMN_291290	TLE3	NM_053400.1	NM_053400.1		84424	16758125	NM_053400.1	Tle3	NP_445852.1	ILMN_1364558	0002190092	S	4486	TGAGGGTGTCTAAAACCTGCCCATCTCCAGTGCTCCAACTGAGCGGCTGC	8	+	65530769-65530818	8q24	Rattus norvegicus transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) (Tle3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Esp3	Esp3
Rattus norvegicus	RefSeq	GI_19705484-S	ILMN_296830	SULF1	NM_134378.1	NM_134378.1		171396	19705484	NM_134378.1	Sulf1	NP_599205.1	ILMN_1348907	0002450215	S	3649	TTCGATGTGTCCCACTTGGAGCAGCCTGTTCACTCCAGCCACGTGGAAGG	5	-	5583264-5583313	5q11	Rattus norvegicus sulfatase 1 (Sulf1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IMP]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence NAS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IMP]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence NAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IMP]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence NAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence NAS]	Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence ISS]; Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: dodecyl sulfate + H2O = SO4(2-) (sulfate) + H+ + 1-dodecanol [goid 18741] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_47577898-S	ILMN_283945	OLR1159	NM_001000871.1	NM_001000871.1		405168	47577898	NM_001000871.1	Olr1159	NP_001000871.1	ILMN_1359921	0006860102	S	326	GTATGGATAGTCTACTACTGGCTGTGATGGCCTATGACCGATGGGTAGCA	8	+	18152310-18152359	8q13	Rattus norvegicus olfactory receptor 1159 (Olr1159), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1159	Olr1159
Rattus norvegicus	RefSeq	GI_62651831-S	ILMN_61885	MYO1F_PREDICTED	XM_234942.4	XM_234942.4		314654	109480339	XM_234942.4	Myo1f_predicted	XP_234942.3	ILMN_1356363	0001990711	S	3549	TGGGGGCCCTGTGTATAGGAGGATCACCACTGTAGCACCCCATGCCTGGT	7	+	16124987-16125036	7q12	PREDICTED: Rattus norvegicus myosin IF (predicted) (Myo1f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657169	ILMN_70135	HEXIM2_PREDICTED	XM_221008.4	XM_221008.4		303580	109489130	XM_221008.4	Hexim2_predicted	XP_221008.4	ILMN_1650330	0000510092	S	1182	AACGAGATGTGGAACCGAGAGGGCAGCTACTGTGACCGGGAGAAGACAGC	10	+	92311985-92312034	10q32.1	PREDICTED: Rattus norvegicus hexamthylene bis-acetamide inducible 2 (predicted) (Hexim2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645739-S	ILMN_267968	CSTF3_PREDICTED	XM_001072972.1	XM_001072972.1		362178	109470314	XM_001072972.1	Cstf3_predicted	XP_001072972.1	ILMN_1373831	0002470563	S	1932	TTCCATTTCAGCCACGACATTTAGCACCTCCAGGCTTGCACCCGGTCCCC				3q32	PREDICTED: Rattus norvegicus cleavage stimulation factor, 3' pre-RNA, subunit 3 (predicted) (Cstf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018587-S	ILMN_297497	GALNT13	NM_199106.1	NM_199106.1		311039	40018587	NM_199106.1	Galnt13	NP_954537.1	ILMN_1366096	0003290128	S	1714	GCAGTGGCAGCAGATCTCAACAATGGCTGCTGAGGAACATGACCTTGGGG	3	+	36657366-36657415	3q12	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) (Galnt13), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence ISS]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	T13	T13
Rattus norvegicus	RefSeq	GI_62660785-I	ILMN_55217	TBRG4_PREDICTED	XM_573656.1	XM_573656.1		360977	62660785	XM_573656.1	Tbrg4_predicted	XP_573656.1	ILMN_1375291	0001940520	S	20	CCGTCTGGCGTCATGGAGAGACTGGGTTTCTAAGCGGAACAAGACTGGCA				14q21	PREDICTED: Rattus norvegicus transforming growth factor beta regulated gene 4 (predicted) (Tbrg4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664193-S	ILMN_69541	LOC498838	XM_574122.1	XM_574122.1		498838	62664193	XM_574122.1	LOC498838	XP_574122.1	ILMN_1358128	0005700528	S	1521	GAGGTGATGGCGACCAAGGCTAGACAGAGAAATCTGGTTCACACCCCACC					PREDICTED: Rattus norvegicus similar to bromodomain containing 8 isoform 2 (LOC498838), mRNA.					
Rattus norvegicus	RefSeq	GI_62640759-S	ILMN_52947	RGD1311021_PREDICTED	XM_218824.4	XM_218824.4		308765	109458956	XM_218824.4	RGD1311021_predicted	XP_218824.4	ILMN_1367015	0000870707	S	917	CCGCTGAGATCCTGTATCACTTACTGGGCAAGAGACTAGGGAGAAGGGCC	1	-	135653434-135653483	1q31	PREDICTED: Rattus norvegicus hypothetical LOC308765 (predicted) (RGD1311021_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865653-A	ILMN_281657	EFEMP1	NM_001012039.1	NM_001012039.1		305604	58865653	NM_001012039.1	Efemp1	NP_001012039.1	ILMN_1376615	0002940075	S	1449	GCTGGTGCTTGTGAAGTCGCTAACAGGACCAAGAGAACACATCGTGGACC	14	+	109828074-109828123	14q22	Rattus norvegicus EGF-containing fibulin-like extracellular matrix protein 1 (Efemp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence NAS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	T16	T16
Rattus norvegicus	RefSeq	GI_47575962-S	ILMN_274756	OLR1504	NM_001000495.1	NM_001000495.1		303296	47575962	NM_001000495.1	Olr1504	NP_001000495.1	ILMN_1364708	0004920736	S	384	TCCTTTGCATTACACCACCATCATGAGCACCAAGGTTTGTGCTTCACTAC	10	-	61209826-61209875	10q24	Rattus norvegicus olfactory receptor 1504 (Olr1504), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665459-S	ILMN_49807	LOC292104	XM_226568.2	XM_226568.2		292104	62665459	XM_226568.2	LOC292104	XP_226568.2	ILMN_1366352	0003610170	S	237	GTGAGGTGCTGCCCTGCTTCTGTGGGTGCTCTGAGGAAAAAGAAGGCACC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC292104), mRNA.					
Rattus norvegicus	RefSeq	GI_62659662-S	ILMN_61816	LOC501862	XM_577277.1	XM_577277.1		501862	62659662	XM_577277.1	LOC501862	XP_577277.1	ILMN_1358116	0003190452	S	852	CAAACCATGACGTGGCTCTCGGCTCTGACCTACTGTCGCCACCACTACAC					PREDICTED: Rattus norvegicus similar to FLJ44005 protein (LOC501862), mRNA.					
Rattus norvegicus	RefSeq	GI_62662817-S	ILMN_48981	GPR124_PREDICTED	XM_240449.3	XM_240449.3		306543	62662817	XM_240449.3	Gpr124_predicted	XP_240449.3	ILMN_1353358	0004850040	S	4846	AGCCTATGCTTACGCCGTCGGAGGGCAGCGACACAAGCGCCGCACAGATT					PREDICTED: Rattus norvegicus G protein-coupled receptor 124 (predicted) (Gpr124_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981677-S	ILMN_262391	TSHB	NM_013116.1	NM_013116.1		25653	6981677	NM_013116.1	Tshb	NP_037248.1	ILMN_1359649	0003520592	S	173	GAGTGTGCCTACTGCCTGACCATCAACACCACCATCTGCGCTGGGTATTG	2	-	197909017-197909066	2q34	Rattus norvegicus thyroid stimulating hormone, beta (Tshb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus [goid 33189] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649715-S	ILMN_273927	LOC685491	XM_001061719.1	XM_001061719.1		685491	109475537	XM_001061719.1	LOC685491	XP_001061719.1	ILMN_1367896	0005570551	S	1898	TATAGTTTGACGCCATCTCCATTTTGGCTAACCTGTCTCACCATCAGGCC	5	-	148472459-148472508	5q36	PREDICTED: Rattus norvegicus similar to retinoblastoma binding protein 4, transcript variant 2 (LOC685491), mRNA.					
Rattus norvegicus	RefSeq	GI_62658477-S	ILMN_269753	RGD1564396_PREDICTED	XM_001072483.1	XM_001072483.1		288486	109496618	XM_001072483.1	RGD1564396_predicted	XP_001072483.1	ILMN_1374543	0006100484	S	1760	CTCACAGGAGAGGGAACGGGAGTGGGGTTGATGTGGGAAGGCTCCTTTAA				12p11	PREDICTED: Rattus norvegicus similar to hypothetical protein C530015C18 (predicted) (RGD1564396_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667313-S	ILMN_55807	RGD1565148_PREDICTED	XM_577028.2	XM_577028.2		501630	109511142	XM_577028.2	RGD1565148_predicted	XP_577028.2	ILMN_1371869	0006350132	S	1924	GCAGCGGAGGCAAAGTATCTAAAGGGACCATCCCTTGGCTATAGGGAGAG	X	+	126914186-126914235	Xq35	PREDICTED: Rattus norvegicus similar to melanoma associated antigen (mutated) 1-like 1 (predicted) (RGD1565148_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656257-S	ILMN_56676	MYH4_PREDICTED	XM_340818.2	XM_340818.2		360543	62656257	XM_340818.2	Myh4_predicted	XP_340819.2	ILMN_1374894	0006940551	S	5534	CAAGGGTCTTCGCAAGCATGAGAGAAGAACCGAGGAGGACCGCAAGAACG				10q24	PREDICTED: Rattus norvegicus myosin, heavy polypeptide 4, skeletal muscle (predicted) (Myh4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718614-S	ILMN_49191	LOC501437	XM_576846.1	XM_576846.1		501437	62718614	XM_576846.1	LOC501437	XP_576846.1	ILMN_1349871	0003610717	S	698	GGGCAAATGGGCACAGATCCAAAAGACAACACAGCCGGCTCTTGTGGCAC					PREDICTED: Rattus norvegicus similar to MIC2 like 1 (LOC501437), mRNA.					
Rattus norvegicus	RefSeq	GI_8393040-S	ILMN_279749	CAPN3	NM_017117.1	NM_017117.1		29155	8393040	NM_017117.1	Capn3	NP_058813.1	ILMN_1362450	0003850338	S	2845	CAGTAGGCACACCTCCACCAAACTGGGCTCCTGGTCACGTTCCTTCTCCA	3	+	106997982-106998031	3q35	Rattus norvegicus calpain 3 (Capn3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence TAS]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence ISS]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IDA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Lp85; p94; Lp82; Lp84	Lp85; p94; Lp82; Lp84
Rattus norvegicus	RefSeq	GI_62664255-S	ILMN_53167	LOC498846	XM_344667.2	XM_344667.2		498846	62664255	XM_344667.2	LOC498846	XP_344668.2	ILMN_1363005	0000520711	S	4936	GAGAAGAAACCCCGCAGGTGGTCTTAAATGCTCATGGGCCACAGGGGAAG				18p11	PREDICTED: Rattus norvegicus similar to protocadherin gamma A1 (LOC498846), mRNA.					
Rattus norvegicus	RefSeq	GI_62652066-S	ILMN_50448	LOC500828	XM_576218.1	XM_576218.1		500828	62652066	XM_576218.1	LOC500828	XP_576218.1	ILMN_1356817	0001780162	S	226	TAAATCTGTGCTTAGAAACCAAAGCGAGAGGCAAGCGCAGGAACCCAAGC					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC500828), mRNA.					
Rattus norvegicus	RefSeq	GI_62641504-S	ILMN_66487	LOC497740	XM_579710.1	XM_579710.1		497740	62641504	XM_579710.1	LOC497740	XP_579710.1	ILMN_1362616	0000450066	S	2917	AGGTGCCTGAGGAGCCTGTAGGGGCCCCGGCTGTACAGTCCATCCTGGTA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_178021 (LOC497740), mRNA.					
Rattus norvegicus	RefSeq	GI_62666516-I	ILMN_266710	FUNDC1	NM_001025027.1	NM_001025027.1		363442	68163496	NM_001025027.1	Fundc1	NP_001020198.1	ILMN_1375256	0002370086	S	1600	CTCTGGGCCAGCCTCACACTTATTCCGAGCATCTCTTTTCCAAAGACAGC	X	+	16689113-16689162	Xq12	Rattus norvegicus FUN14 domain containing 1 (Fundc1), mRNA.				MGC109382	MGC109382
Rattus norvegicus	RefSeq	GI_62666516-A	ILMN_266710	FUNDC1	NM_001025027.1	NM_001025027.1		363442	68163496	NM_001025027.1	Fundc1	NP_001020198.1	ILMN_1376256	0006550133	S	299	ATGGGTGGCGTGACTGGCTGGTGTGCAGGATTTTTATTCCAAAAGGTTGG	X	+	16673807-16673826:16677142-16677171	Xq12	Rattus norvegicus FUN14 domain containing 1 (Fundc1), mRNA.				MGC109382	MGC109382
Rattus norvegicus	RefSeq	GI_62644331-S	ILMN_48000	LOC365889	XM_345263.2	XM_345263.2		365889	62644331	XM_345263.2	LOC365889	XP_345264.2	ILMN_1364116	0003940280	S	195	GGCCTGGGTCATGTACAGCTTTCTGCAGGCCTTGAAACTGAGTGTGTGGA				2q34	PREDICTED: Rattus norvegicus similar to alpha tubulin (LOC365889), mRNA.					
Rattus norvegicus	RefSeq	GI_16758187-S	ILMN_279315	SLC7A8	NM_053442.1	NM_053442.1		84551	16758187	NM_053442.1	Slc7a8	NP_445894.1	ILMN_1373072	0002260725	S	2825	CCCTTTCAGGATGCCTCTTCCCCACAGAGCTAAGGACCAAGAAGGAGGAC	15	-	32802154-32802203	15p13	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 (Slc7a8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence ISS]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence ISS]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence IEA]	Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence ISS]; Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence IEA]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]	Lat4; Lat2	Lat4; Lat2
Rattus norvegicus	RefSeq	GI_27687806-S	ILMN_263233	LOC301725	XM_001070731.1	XM_001070731.1		301725	109514212	XM_001070731.1	LOC301725	XP_001070731.1	ILMN_1360959	0002120152	S	284	CCAATCACGAAGAGAAGCCGAAGGCCAAGAAGCAGCAGCGGAAGGACCAT				9q37	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (LOC301725), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865663-A	ILMN_279101	SH2D4A	NM_001012048.1	NM_001012048.1		306376	58865663	NM_001012048.1	Sh2d4a	NP_001012048.1	ILMN_1376840	0002570711	S	2227	GTGTCACTGATTGGGTGGGCTTTGAGACCCTCCTTCTAGCTGCCTGAGAG	16	-	22957729-22957778	16p14	Rattus norvegicus SH2 domain containing 4A (Sh2d4a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577336-S	ILMN_278646	OLR420	NM_001000389.1	NM_001000389.1		296682	47577336	NM_001000389.1	Olr420	NP_001000389.1	ILMN_1367504	0001090347	S	756	TGGCACCCTCACATGGGTCTATTTCAGGCCCTTTTCCAGCTACTCAGTGG	3	+	16473250-16473299	3q11	Rattus norvegicus olfactory receptor 420 (Olr420), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr420; ratchr3-16368867-16369793_ORF	Olr420; ratchr3-16368867-16369793_ORF
Rattus norvegicus	RefSeq	GI_51988897-S	ILMN_287224	DIO1	NM_021653.2	NM_021653.2		25430	51988897	NM_021653.2	Dio1	NP_067685.5	ILMN_1350755	0006520433	S	1449	CTTACTGGTCTTTCATGTTAGATGGCTTTGGACTGACGGGTAGCCATGGG	5	-	128385836-128385885	5q34	Rattus norvegicus deiodinase, iodothyronine, type I (Dio1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence NAS]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence IDA]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence ISS]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]	TXDI1; MGC93462; ITDI1; 5DI	TXDI1; MGC93462; ITDI1; 5DI
Rattus norvegicus	RefSeq	GI_62644176-S	ILMN_63019	GNAT2_PREDICTED	XM_345271.3	XM_345271.3		365901	109465371	XM_345271.3	Gnat2_predicted	XP_345272.1	ILMN_1372843	0001440685	S	1403	GAGCACAAACATAACTGAAGGGAGGCACAGGATGGCTGCTGTGGTTGGCC	2	+	203661255-203661304	2q34	PREDICTED: Rattus norvegicus guanine nucleotide binding protein, alpha transducing 2 (predicted) (Gnat2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242232-S	ILMN_275614	STMN3	NM_024346.1	NM_024346.1		29246	13242232	NM_024346.1	Stmn3	NP_077322.1	ILMN_1355500	0000940600	S	737	GAGCAGCGGGAGGAAATGTCTGGCTAAAGAGCACTGGACCAAGCAGCAAC	3	-	170447063-170447111:170447112-170447112	3q43	Rattus norvegicus stathmin-like 3 (Stmn3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IMP]	The removal of tubulin heterodimers from one or both ends of a microtubule [goid 7019] [evidence IMP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell [goid 31122] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell [goid 31122] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that modulates the activity of a GTPase of the Rac family [goid 32314] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Rac protein signal transduction [goid 35021] [evidence ISS]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51493] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence TAS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]	Sclip	Sclip
Rattus norvegicus	RefSeq	GI_11078688-S	ILMN_277565	EREG	NM_021689.1	NM_021689.1		59325	11078688	NM_021689.1	Ereg	NP_067721.1	ILMN_1357369	0002120193	S	567	ATCAAGGGAAGAATACGAGAGAGTGACCTCAGGGGGCCCAGGGTTGCCAC	14	-	18521286-18521335	14p22	Rattus norvegicus epiregulin (Ereg), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Increase in size of the cumulus surrounding the oocyte including change in morphology due to proliferation and dispersion of cumulus cells [goid 1550] [evidence IDA]; A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of production of a cytokine [goid 1819] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle in the female germline [goid 7143] [evidence IDA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The synthesis of messenger RNA (mRNA) from a DNA template [goid 9299] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The release of a mature ovum/oocyte from an ovary [goid 30728] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; The series of molecular signals mediated by luteinizing hormone [goid 42700] [evidence IDA]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection [goid 45089] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor activity [goid 45741] [evidence IDA]; Any process that activates or increases angiogenesis [goid 45766] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; The stage in oogenesis when a single layer of cuboidal follicle cells surrounds the oocyte. The oocyte nucleus is large [goid 48160] [evidence IDA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell differentiation [goid 51151] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell differentiation [goid 51151] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]	Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642534	ILMN_291120	LOC361776	NM_001014169.1	NM_001014169.1		361776	62079070	NM_001014169.1	LOC361776	NP_001014191.1	ILMN_1650147	0005130050	S	1098	GCCGATGAGTCACCCCACACTTGAGCATCATAGAACCCAACATGAGTGGA	1	+	264981237-264981244:264981245-264981286	1q55	Rattus norvegicus LOC361776 (LOC361776), mRNA.					
Rattus norvegicus	RefSeq	GI_27718544-S	ILMN_59453	RGD1559489_PREDICTED	XM_235207.2	XM_235207.2		299843	109480635	XM_235207.2	RGD1559489_predicted	XP_235207.2	ILMN_1351295	0003130132	S	723	AGAAAAGGCTCCTCAAGACCAAAAGCAGAGCACAGGGCTGGACCATGGCC	7	+	61751864-61751913	7q22	PREDICTED: Rattus norvegicus similar to sentrin 15 (predicted) (RGD1559489_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656897-S	ILMN_53768	HOXB3_PREDICTED	XM_220893.4	XM_220893.4		303488	109488882	XM_220893.4	Hoxb3_predicted	XP_220893.2	ILMN_1350692	0002370577	S	1891	GAGACCGTGGAACTGGGGGATGGGCGCGGTTTGGAGTCCTGAAAAAGGTA	10	+	85079154-85079203	10q31	PREDICTED: Rattus norvegicus homeo box B3 (predicted) (Hoxb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642302-S	ILMN_58102	LOC502387	XM_577865.1	XM_577865.1		502387	62642302	XM_577865.1	LOC502387	XP_577865.1	ILMN_1370242	0004780647	S	280	CCTTGTTTGAAAGGCCAACCAATAGAGGTGTACCCTGTGATCCCACCTTC					PREDICTED: Rattus norvegicus similar to cytochrome P450 2C66; CYP2C66 (LOC502387), mRNA.			Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656767-S	ILMN_266492	NOG	XM_001081231.1	XM_001081231.1		25495	109491639	XM_001081231.1	Nog	XP_001081231.1	ILMN_1374890	0000380528	S	1279	TCCTGCTCTGTGCCTGAGGGCATGGTGTGTAAGCCATCCAAGTCTGTGCA				10q26	PREDICTED: Rattus norvegicus noggin (Nog), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure [goid 1655] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence IEA]; The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid [goid 30850] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEP]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IMP]; The process by which the anatomical structures of the notochord are generated and organized. Morphogenesis pertains to the creation of form. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column [goid 48570] [evidence ISS]; The process by which the anatomical structures of the notochord are generated and organized. Morphogenesis pertains to the creation of form. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column [goid 48570] [evidence IEA]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IEA]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of astrocyte differentiation [goid 48712] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of astrocyte differentiation [goid 48712] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell [goid 48762] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell proliferation [goid 60044] [evidence ISS]; The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 60173] [evidence ISS]; The process by which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A joint is the connecting structure between the bones of the skeleton. Morphogenesis pertains to the creation of form [goid 60272] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646915-S	ILMN_64618	LOC500050	XM_575406.1	XM_575406.1		500050	62646915	XM_575406.1	LOC500050	XP_575406.1	ILMN_1364593	0002060292	S	1635	AGTGGCCGTTTCGGGGGCAGTGCAAGACAAAGGGTCTATCCCCAAGTTTG				4q22	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain-containing SOCS box protein Asb-15 (LOC500050), mRNA.					
Rattus norvegicus	RefSeq	GI_27684774-S	ILMN_267715	LOC301506	XM_001059238.1	XM_001059238.1		301506	109486573	XM_001059238.1	LOC301506	XP_001059238.1	ILMN_2040179	0003450554	S	1697	CTCTCTGCTGCTTGGAGCCTTAACTCTGGAAGGGGGTGGTCAGGGTTCCA					PREDICTED: Rattus norvegicus similar to fibronectin type 3 and SPRY domain-containing protein (LOC301506), mRNA.					
Rattus norvegicus	RefSeq	GI_62642914-S	ILMN_67656	LOC310086	XM_226757.3	XM_226757.3		310086	62642914	XM_226757.3	LOC310086	XP_226757.2	ILMN_1359287	0005890093	S	4689	CCGACCACCAAGGAGATTGTTTGCCCAGAGTTTCAAAGCACATTGTCTAC				2q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D130064H19 (predicted) (LOC310086), mRNA.					
Rattus norvegicus	RefSeq	GI_11177867-S	ILMN_289663	MYCS	NM_021837.1	NM_021837.1		24581	11177867	NM_021837.1	Mycs	NP_068609.1	ILMN_1371580	0005570133	S	951	GGATCCTCTAGGGCCCCTCAAATGCGTTCTCAGGCCAAAGGCTCCGAGAT	X	-	28062302-28062351	Xq13	Rattus norvegicus myc-like oncogene, s-myc protein (Mycs), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8392869-S	ILMN_270438	ADRA1A	NM_017191.1	NM_017191.1		29412	8392869	NM_017191.1	Adra1a	NP_058887.1	ILMN_1367014	0001660075	S	1526	GGGGAGAAGGAGGATGCCAGTTTATCAGGCGAGTGGGTAGAGCACAAGGG	15	+	46263275-46263324	15p12	Rattus norvegicus adrenergic receptor, alpha 1a (Adra1a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction as a result of the baroreceptor response to increased blood pressure [goid 1985] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction as a result of the baroreceptor response to increased blood pressure [goid 1985] [evidence IEA]; A process that results in a decrease in the diameter of an artery during the norepinephrine-epinephrine response to decreased blood pressure [goid 1994] [evidence ISS]; A process that results in a decrease in the diameter of an artery during the norepinephrine-epinephrine response to decreased blood pressure [goid 1994] [evidence IEA]; The process by which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction [goid 1996] [evidence ISS]; The process by which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction [goid 1996] [evidence IEA]; Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings [goid 1997] [evidence ISS]; Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings [goid 1997] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IMP]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IDA]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 45760] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4937] [evidence IDA];  [goid 4937] [evidence ISS];  [goid 4937] [evidence IEA]	Adra1c	Adra1c
Rattus norvegicus	RefSeq	GI_58865643-A	ILMN_280707	MTMR3	NM_001012038.1	NM_001012038.1		305482	58865643	NM_001012038.1	Mtmr3	NP_001012038.1	ILMN_1376303	0003170750	S	3530	AAACAGGACACAGAGATGACCCGTTGGCTACCTGACCACTTGGCTGCCCA	14	-	85102743-85102778:85103213-85103226	14q21	Rattus norvegicus myotubularin related protein 3 (Mtmr3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IEA]	Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650304-S	ILMN_52973	RGD1564914_PREDICTED	XM_575987.2	XM_575987.2		500616	109477907	XM_575987.2	RGD1564914_predicted	XP_575987.1	ILMN_1358832	0001170112	S	3589	CCACGCTGAGGACTGGAGGAAGACTGAGCAGGAGATGCTGTGACAAGAAC	6	+	10582511-10582560	6q12	PREDICTED: Rattus norvegicus similar to Suppressor of cytokine signaling 5 (predicted) (RGD1564914_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14091735-S	ILMN_302173	IMPA1	NM_032057.1	NM_032057.1		83523	14091735	NM_032057.1	Impa1	NP_114446.1	ILMN_1364531	0000780600	S	1714	CATACCGTGGTGTTGGCTGGTGTGAACTGTGTATTGTGGCGTTCATGGTG	2	+	93437918-93437967	2q23	Rattus norvegicus Inositol (myo)-1(or 4)-monophosphatase 1 (Impa1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence ISS]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEA]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: myo-inositol 1-phosphate + H2O = myo-inositol + phosphate [goid 8934] [evidence IEA]; Catalysis of the reaction: myo-inositol 1-phosphate + H2O = myo-inositol + phosphate [goid 8934] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with lithium ions (Li+) [goid 31403] [evidence IEA]; Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3 [goid 42578] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_41152524-S	ILMN_52687	ACOT7	NM_013214.3	NM_013214.3		26759	78126175	NM_013214.3	Acot7	NP_037346.1	ILMN_1366923	0007040692	S	1069	TGCAGATGAAGGCGAAGCGACAGGGCCATACAGAGCCTCAGCCCTAGATG	5	+	169501560-169501606:169501607-169501609	5q36	Rattus norvegicus acyl-CoA thioesterase 7 (Acot7), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 9062] [evidence ISS]	Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence ISS]; Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate [goid 47617] [evidence IDA]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105261; Bach; Rbach	MGC105261; Bach; Rbach
Rattus norvegicus	RefSeq	GI_62660935-S	ILMN_65529	PNPT1	XM_341266.3	XM_341266.3		360992	109500130	XM_341266.3	Pnpt1	XP_341267.2	ILMN_1363036	0005290577	S	2215	CTTTGGCCGTGATCCAGCTGATGGAAGAATGAGGCTTTCCCGTAAAGTAC	14	+	110160536-110160585	14q22	PREDICTED: Rattus norvegicus polyribonucleotide nucleotidyltransferase 1 (Pnpt1), mRNA.	The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 6402] [evidence IEA]	Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule [goid 175] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: ATP + RNA(n) = diphosphate + RNA(n+1) [goid 4654] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647406-S	ILMN_65415	LOC500171	XM_575523.1	XM_575523.1		500171	62647406	XM_575523.1	LOC500171	XP_575523.1	ILMN_1358941	0001190673	S	238	CAAGTCAGGTCCCACCCTGTGCTGGAGTCAGCTTCACACATGTTACACAG				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC500171), mRNA.					
Rattus norvegicus	RefSeq	GI_62651776-S	ILMN_270962	LOC500797	XM_001077148.1	XM_001077148.1		500797	109481621	XM_001077148.1	LOC500797	XP_001077148.1	ILMN_1360287	0001090632	S	1727	GCAGTTCCTCTCGGGCATCTGGCATCACCGGCAGCTATTCCGTGTCAGAA				7q11	PREDICTED: Rattus norvegicus hypothetical LOC500797 (LOC500797), mRNA.					
Rattus norvegicus	RefSeq	GI_6981415-S	ILMN_287893	PRPH1	NM_012633.1	NM_012633.1		24688	6981415	NM_012633.1	Prph1	NP_036765.1	ILMN_1366296	0004590280	S	1558	CAGCCCGATCCTGAGGCTGGACCTCTCCCTGATGCATTGATGTGACCCAT	7	+	137839740-137839789	7q36	Rattus norvegicus peripherin 1 (Prph1), mRNA.				Perf; Prph	Perf; Prph
Rattus norvegicus	RefSeq	GI_56711249-S	ILMN_48156	AOC3	NM_031582.2	NM_031582.2		29473	71896589	NM_031582.2	Aoc3	NP_113770.2	ILMN_1370519	0003360176	S	3171	GGCATGCAAATGAGCCTGAGTCTGTTCCAAGATGGGTCTGGATTGGTCGG	10	+	90364274-90364323	10q32.1	Rattus norvegicus amine oxidase, copper containing 3 (vascular adhesion protein 1) (Aoc3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence ISS]; The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence ISS]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence ISS]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence ISS]	SSAO	SSAO
Rattus norvegicus	RefSeq	GI_62661354-S	ILMN_286879	RGD1561109_PREDICTED	XM_001063155.1	XM_001063155.1		305865	109502251	XM_001063155.1	RGD1561109_predicted	XP_001063155.1	ILMN_1374590	0002450487	S	1212	CGCAGCTGTGGATCTCCTGAAGCAAGAGGTGATATTCAATGTGGTCCGCC				15p14	PREDICTED: Rattus norvegicus similar to solute carrier family 35, member F3 (predicted) (RGD1561109_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718562-S	ILMN_68534	LOC503366	XM_578905.1	XM_578905.1		503366	62718562	XM_578905.1	LOC503366	XP_578905.1	ILMN_1352140	0000940433	S	377	CCCGCCCATTGGCCGGCCGCTGCCGGTTGGTGGAGCGATATATTTGGTTA					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503366), mRNA.					
Rattus norvegicus	RefSeq	GI_62657487-S	ILMN_67867	PYCR1_PREDICTED	XM_221200.4	XM_221200.4		287877	109489507	XM_221200.4	Pycr1_predicted	XP_221200.4	ILMN_1359891	0000380402	S	998	CAGCCCTGGATGCTCTGGCTGATGGTGGTGTGAAAATGGGGCTTCCAAGA	10	-	110033650-110033699	10q32.3	PREDICTED: Rattus norvegicus pyrroline-5-carboxylate reductase 1 (predicted) (Pycr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981687-S	ILMN_299348	TNFRSF4	NM_013049.1	NM_013049.1		25572	6981687	NM_013049.1	Tnfrsf4	NP_037181.1	ILMN_1373398	0004920372	S	752	ACCTTGTTGGGGAAACAGCTTCAGGACCCCTATCCAGGAGGAGCAGACCG	5	+	172858684-172858691:172858784-172858825	5q36	Rattus norvegicus tumor necrosis factor receptor superfamily, member 4 (Tnfrsf4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; A defense response that is mediated by cells [goid 6968] [evidence TAS]; A defense response that is mediated by cells [goid 6968] [evidence IEA]; A defense response that is mediated by cells [goid 6968] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence TAS]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence IEA]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Txgp1; Ox40	Txgp1; Ox40
Rattus norvegicus	RefSeq	GI_47577638-S	ILMN_287462	OLR546	NM_001001054.1	NM_001001054.1		405942	47577638	NM_001001054.1	Olr546	NP_001001054.1	ILMN_1355552	0003850458	S	886	GATGTGAAAGAAGCAGTCAAGAGGTCAGTTTATAGGGAGAGGAGTGGCCC	3	-	70664853-70664902	3q24	Rattus norvegicus olfactory receptor 546 (Olr546), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr546	Olr546
Rattus norvegicus	RefSeq	GI_62644142-S	ILMN_282775	WNT2B	XM_001066411.1	XM_001066411.1		116466	109467337	XM_001066411.1	Wnt2b	XP_001066411.1	ILMN_1364458	0002230577	S	1379	ACACGTGCAAGGCCCCTAAGAAGGCAGAGTGGCTGGACCAGACCTGAACA				2q34	PREDICTED: Rattus norvegicus wingless-type MMTV integration site family, member 2B (Wnt2b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47059178-S	ILMN_281494	HSPA1B	NM_212504.1	NM_212504.1		294254	47059178	NM_212504.1	Hspa1b	NP_997669.1	ILMN_1371746	0005720440	S	5599	CATGTCCATGGCTCAAAGAAGCAGGCAGAACGTAGGGGAAAGAGTTGCTT				20p12	Rattus norvegicus heat shock 70kD protein 1B (mapped) (Hspa1b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence IDA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptosis [goid 33033] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of vasoconstriction [goid 45906] [evidence IMP]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IPI]	Hspa2; Hspa1b; Hsp70-2; Hsp72	Hspa2; Hspa1b; Hsp70-2; Hsp72
Rattus norvegicus	RefSeq	GI_62640835-S	ILMN_264395	RGD1308210	XM_001068403.1	XM_001068403.1		361601	109462260	XM_001068403.1	RGD1308210	XP_001068403.1	ILMN_1352255	0006900605	S	2228	GCCTGGATGCGGCACGGTGGGTGGTAATGGAATAAAGGACGCATGGATCA				1q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210412D01 (RGD1308210), mRNA.					
Rattus norvegicus	RefSeq	GI_9506846-S	ILMN_269195	PBSN	NM_019125.1	NM_019125.1		54193	9506846	NM_019125.1	Pbsn	NP_061998.1	ILMN_1351823	0002190239	S	403	CAGAAGAAATGACGTTACACGAGTGGCTGGAGTTTTGGCGAAAGGCAGGC	X	-	63589480-63589492:63590407-63590443	Xq22	Rattus norvegicus probasin (Pbsn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence IEA]	PB	PB
Rattus norvegicus	RefSeq	GI_62651555-S	ILMN_69781	LOC503098	XM_578618.1	XM_578618.1		503098	62651555	XM_578618.1	LOC503098	XP_578618.1	ILMN_1349163	0007100397	S	765	GGTGACAATGCCATCCACTCTGACTTTCTCTCCAGAGGTGTTCACTCCCA					PREDICTED: Rattus norvegicus similar to monoclonal antibody F23.1 heavy chain variable region (LOC503098), mRNA.					
Rattus norvegicus	RefSeq	GI_62638869-S	ILMN_48175	RGD1565772_PREDICTED	XM_218203.4	XM_218203.4		308341	109458113	XM_218203.4	RGD1565772_predicted	XP_218203.4	ILMN_1368006	0004210014	S	4283	TGCCCAGGGGTTGGGGCAGCTAAGTGAGACTGTAAAGAGGCTTGCAGAGG	1	-	67630724-67630773	1q12	PREDICTED: Rattus norvegicus similar to hypothetical protein A430110N23 (predicted) (RGD1565772_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576044-S	ILMN_291200	OLR1432	NM_001000012.1	NM_001000012.1		287321	47576044	NM_001000012.1	Olr1432	NP_001000012.1	ILMN_1367733	0001570215	S	911	TCGTGAGAACAAAGTGTGGTGTCTACAGAGCCAGAGGGAAAGGAAGTGTC	10	-	44488979-44489028	10q22	Rattus norvegicus olfactory receptor 1432 (Olr1432), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1432	Olr1432
Rattus norvegicus	RefSeq	GI_34861846-S	ILMN_282917	RGD1309710_PREDICTED	XM_001072116.1	XM_001072116.1		293700	109463444	XM_001072116.1	RGD1309710_predicted	XP_001072116.1	ILMN_1355094	0001980082	S	188	TGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGATGAGACG				1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610038D11 (predicted) (RGD1309710_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576234-S	ILMN_293920	OLR1321	NM_001000792.1	NM_001000792.1		405076	47576234	NM_001000792.1	Olr1321	NP_001000792.1	ILMN_1370975	0002230114	S	715	AGCACTTGCAGTTCACACATATCAGCCGTTGCTGTCTTCTTTGAGTCTGC	8	+	42731067-42731116	8q22	Rattus norvegicus olfactory receptor 1321 (Olr1321), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1321	Olr1321
Rattus norvegicus	RefSeq	GI_62078898-S	ILMN_293565	RGD1307947	NM_001014083.1	NM_001014083.1		314788	62078898	NM_001014083.1	RGD1307947	NP_001014105.1	ILMN_1356042	0003870390	S	2124	GGAGAGTGATGTGAGCGGTGTTTACACTAACAGCGGTGAGCAGCCAGGGC	7	-	38227512-38227561	7q13	Rattus norvegicus similar to RIKEN cDNA C430008C19 (RGD1307947), mRNA.					
Rattus norvegicus	RefSeq	GI_31544073-S	ILMN_289423	DYNLRB1	NM_131910.3	NM_131910.3		170714	31544073	NM_131910.3	Dynlrb1	NP_571985.1	ILMN_1372238	0006940575	S	547	CCACCAAGGAGTGCCTCTGATGATCCGGTCAGTCCCCAGAAGAGCTCAGT	3	+	145740084-145740133	3q42	Rattus norvegicus dynein light chain roadblock-type 1 (Dynlrb1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	The actions or reactions of an organism in response to a visual stimulus [goid 7632] [evidence IDA]; The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons [goid 8090] [evidence NAS]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]	km23	km23
Rattus norvegicus	RefSeq	GI_62644824-S	ILMN_50693	LOC499765	XM_575101.1	XM_575101.1		499765	62644824	XM_575101.1	LOC499765	XP_575101.1	ILMN_1368010	0004810341	S	1021	GAGAACGGACTGATGCTAGGCGGTTTCCCATCTTGATACGTTCCCTACGG				3p12	PREDICTED: Rattus norvegicus similar to FLJ46082 protein (LOC499765), mRNA.					
Rattus norvegicus	RefSeq	GI_9506916-S	ILMN_299853	NEUROD2	NM_019326.1	NM_019326.1		54276	9506916	NM_019326.1	Neurod2	NP_062199.1	ILMN_1352081	0002100215	S	1501	CAGGCCAGAGGCAGTTGGTAAGGGGCTGCTGAGTTTCGGGGATAGTGTCT	10	-	87098118-87098167	10q31	Rattus norvegicus neurogenic differentiation 2 (Neurod2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638314-S	ILMN_66100	LOC498981	XM_574270.1	XM_574270.1		498981	62638314	XM_574270.1	LOC498981	XP_574270.1	ILMN_1358818	0007050609	S	1245	TTTTTACAGCCCGAGCAAAGAAAAGGTGTCCCGTGGCGAGAGGCCGTGGG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498981), mRNA.					
Rattus norvegicus	RefSeq	GI_62717778-S	ILMN_70021	LOC317026	XM_229658.3	XM_229658.3		317026	62717778	XM_229658.3	LOC317026	XP_229658.3	ILMN_1358035	0003940162	S	17	GACTGAGCCCTCTGACAATGACTTCACCTGCATCAGAGACTGGAGACTTC					PREDICTED: Rattus norvegicus hypothetical LOC317026 (LOC317026), mRNA.					
Rattus norvegicus	RefSeq	GI_62717817-S	ILMN_49839	LOC304037	XM_221604.4	XM_221604.4		304037	109512874	XM_221604.4	LOC304037	XP_221604.3	ILMN_1360884	0005340736	S	1264	CAGCAACTGGACAACGAGGATGAGCTAGACCAACGAGTGTCAGAACCAGG	Un|NW_047841.1	-	1118276-1118325		PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor-like 2-like 1 (LOC304037), mRNA.					
Rattus norvegicus	RefSeq	GI_62646058-S	ILMN_294039	TCF15_PREDICTED	XM_001061476.1	XM_001061476.1		296272	109471049	XM_001061476.1	Tcf15_predicted	XP_001061476.1	ILMN_1364142	0002100333	S	739	CCAGAAGCCCAAACCACTCCTGCTTCGTGTAGGGACCAGAGGACAATGGC				3q41	PREDICTED: Rattus norvegicus transcription factor 15 (predicted) (Tcf15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644735-S	ILMN_273746	C8G_PREDICTED	XM_001073643.1	XM_001073643.1		296545	109469436	XM_001073643.1	C8g_predicted	XP_001073643.1	ILMN_1366876	0005340113	S	868	TCTGGAGCAGGCGAGGAGGCTGTCTGTGAAACTATACACCCGCACACTGC				3p13	PREDICTED: Rattus norvegicus complement component 8, gamma polypeptide (predicted) (C8g_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648360-S	ILMN_271852	RGD1566236_PREDICTED	XM_578376.1	XM_578376.1		502875	62648360	XM_578376.1	RGD1566236_predicted	XP_578376.1	ILMN_1357900	0002470605	S	806	TGGAGACAGTTGTTCAGGGGGCTAAGACGGTGCAGAAGACCAAAGCGCCC	4	+	152075425-152075474	4q42	PREDICTED: Rattus norvegicus similar to oocyte-specific linker histone H1oo (predicted) (RGD1566236_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575980-S	ILMN_292822	OLR16	NM_001000694.1	NM_001000694.1		404899	47575980	NM_001000694.1	Olr16	NP_001000694.1	ILMN_1366399	0001500152	S	596	GAATTGGCATGTGTCTATGCATGTCCTGCTTTCTCTGTGTTGTGATGTCC	1	-	142435896-142435945	1q32	Rattus norvegicus olfactory receptor 16 (Olr16), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr16	Olr16
Rattus norvegicus	RefSeq	GI_62662140-S	ILMN_52229	LOC498574	XM_573848.1	XM_573848.1		498574	62662140	XM_573848.1	LOC498574	XP_573848.1	ILMN_1369500	0005360112	S	487	GAAGTCCTCCCTGACAGAGTTGATGATTCACCTCCAGCAGAAAGGGAGCC					PREDICTED: Rattus norvegicus similar to Spindlin (LOC498574), mRNA.					
Rattus norvegicus	RefSeq	GI_62659719-S	ILMN_281573	RGD1562658_PREDICTED	XM_001053283.1	XM_001053283.1		498278	109499020	XM_001053283.1	RGD1562658_predicted	XP_001053283.1	ILMN_1355098	0004850278	S	303	CCTACTCAATGCCTGTAATGGGCTGCGTCCTGAAATCATCGGCAAGCCCC				13q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700009P17 (predicted) (RGD1562658_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659160-S	ILMN_49536	SERPINB8_PREDICTED	XM_222490.4	XM_222490.4		288937	109497743	XM_222490.4	Serpinb8_predicted	XP_222490.4	ILMN_1370479	0005890148	S	1021	GCAGTGATCAGGAATACCCGGAGCTGCAGAATAGAGCCAAGGTTCTGTGC	13	+	13739737-13739786	13p13	PREDICTED: Rattus norvegicus serine (or cysteine) peptdiase inhibitor, clade B, member 8 (predicted) (Serpinb8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666162-S	ILMN_61207	LOC502431	XM_577913.1	XM_577913.1		502431	62666162	XM_577913.1	LOC502431	XP_577913.1	ILMN_1360551	0001450048	S	1663	TGGAGACACACTCACCAGGCCCTCGGGAGGACTCCTGGCATCGAATCCTT					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC502431), mRNA.					
Rattus norvegicus	RefSeq	GI_62643999-S	ILMN_53735	RGD1564313_PREDICTED	XM_578051.2	XM_578051.2		502566	109465196	XM_578051.2	RGD1564313_predicted	XP_578051.2	ILMN_2038995	0004610176	S	848	CACACCTCCACAGCCACTCAATGGCCACTGGTTTGTTGGCAACTGATGAT	2	-	188458638-188458687	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1564313_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881388	ILMN_289007	RGD1562485_PREDICTED	XM_001065912.1	XM_001065912.1		302772	109512278	XM_001065912.1	RGD1562485_predicted	XP_001065912.1	ILMN_1650938	0006940239	S	1843	GATCCTCCATCGGACCATCATAAGCGCGGTGGTGTTTGCAACACAGCTGC				Xq33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921511C20 gene (predicted) (RGD1562485_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644241-S	ILMN_296353	MGC124992	XM_001073185.1	XM_001073185.1		499697	109467480	XM_001073185.1	MGC124992	XP_001073185.1	ILMN_1352823	0005910500	S	1208	GGAGGAAGAGCACGATGATGTAGGAGACAGACTCACGGATGGCAGCACTG				2q41	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10287 (MGC124992), mRNA.					
Rattus norvegicus	RefSeq	GI_23463270-S	ILMN_294370	COPS2	NM_153297.1	NM_153297.1		261736	23463270	NM_153297.1	Cops2	NP_695209.1	ILMN_1359102	0004560452	S	1961	CTGTACTTGCAGCTAGTGAAGGTTAGATGACCCGTGCCCTCTGTGGTCAC	3	-	113142105-113142154	3q36	Rattus norvegicus COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) (Cops2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence ISS]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IDA]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]	CSN2; Trip15	CSN2; Trip15
Rattus norvegicus	RefSeq	GI_62648521-S	ILMN_263689	LOC679028	XM_001053717.1	XM_001053717.1		679028	109500650	XM_001053717.1	LOC679028	XP_001053717.1	ILMN_1363378	0000110494	S	1444	GCAGCGGGAGCCATTCTCAGAGCCAACTCAAGCCAAGTGCCCACCAATGA					PREDICTED: Rattus norvegicus similar to recombining binding protein suppressor of hairless isoform 4, transcript variant 1 (LOC679028), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078870-S	ILMN_292210	SNIP1	NM_001014069.1	NM_001014069.1		313588	62078870	NM_001014069.1	Snip1	NP_001014091.1	ILMN_1369356	0004210041	S	1966	GGGCGGGGCCTTGCTGGGGTCTCTGGGTGTATATGTGTCTAAAGGAAGTC	5	+	144416646-144416695	5q36	Rattus norvegicus Smad nuclear interacting protein 1 (Snip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664407-S	ILMN_263053	TNFAIP8_PREDICTED	XM_001056720.1	XM_001056720.1		307428	109507314	XM_001056720.1	Tnfaip8_predicted	XP_001056720.1	ILMN_1357231	0000630546	S	884	TGCACGACATCATTCAGCGCCACCTTACCGCCAAGTCTCACGGACGGGTT				18q11	PREDICTED: Rattus norvegicus tumor necrosis factor, alpha-induced protein 8 (predicted) (Tnfaip8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078928-S	ILMN_286386	CCDC51	NM_001014098.1	NM_001014098.1		316008	62078928	NM_001014098.1	Ccdc51	NP_001014120.1	ILMN_1359982	0002120687	S	1184	CTAGAAGCCCAGGCCAACAGGAATGCCATCTCTAGCACGCTGGTCACCTG	8	+	114106025-114106074	8q32	Rattus norvegicus coiled-coil domain containing 51 (Ccdc51), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1311466	RGD1311466
Rattus norvegicus	RefSeq	GI_62665929-S	ILMN_264975	RGD1559455_PREDICTED	XM_001080477.1	XM_001080477.1		309745	109510031	XM_001080477.1	RGD1559455_predicted	XP_001080477.1	ILMN_1352708	0002680408	S	2858	GGCCCCGGCACCCAGTTGTCATGTGGAGAATGAAGGCTCCGGCTAAAAAG				20p11	PREDICTED: Rattus norvegicus similar to alpha T-catenin (predicted) (RGD1559455_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741438-S	ILMN_294032	OSM	NM_001006961.1	NM_001006961.1		289747	55741438	NM_001006961.1	Osm	NP_001006962.1	ILMN_1370717	0006520079	S	538	CGCTTCCTCTGGGGCTACCATCGCTTCATGGGTTCAGTGGGGAGAGTCTT	14	+	84859900-84859949	14q21	Rattus norvegicus oncostatin M (Osm), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence ISS]; The process of introducing a phosphate group to a tyrosine residue of a Stat3 protein [goid 42503] [evidence IEA]; The process of introducing a phosphate group to a tyrosine residue of a Stat3 protein [goid 42503] [evidence ISS]; The process of introducing a phosphate group to a tyrosine residue of a Stat5 protein [goid 42506] [evidence IEA]; The process of introducing a phosphate group to a tyrosine residue of a Stat5 protein [goid 42506] [evidence ISS]; The process of introducing a phosphate group to a tyrosine residue of a Stat1 protein [goid 42508] [evidence IEA]; The process of introducing a phosphate group to a tyrosine residue of a Stat1 protein [goid 42508] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of meiosis [goid 45835] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence ISS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence IEA]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]	Osm	Osm
Rattus norvegicus	RefSeq	GI_62655624-S	ILMN_278182	TNFRSF17_PREDICTED	XM_001078069.1	XM_001078069.1		287034	109489652	XM_001078069.1	Tnfrsf17_predicted	XP_001078069.1	ILMN_1372639	0006130465	S	305	CAAGGCCGATACTGAGCGGACTAAGAGCAGGGCTGGTGACGAAAGGATTC				10q11	PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 17 (predicted) (Tnfrsf17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666830-S	ILMN_51110	LOC367783	XM_346299.2	XM_346299.2		367783	62666830	XM_346299.2	LOC367783	XP_346300.2	ILMN_1355664	0001410731	S	292	GCCCTGATAATGCTGTTCTTCGTGATGGTCTTGAGGTGGCCTATGATGAC					PREDICTED: Rattus norvegicus similar to ankyrin repeat and SOCS box-containing protein 9 (LOC367783), mRNA.					
Rattus norvegicus	RefSeq	GI_62642405-S	ILMN_62843	PPRC1_PREDICTED	XM_215259.4	XM_215259.4		294007	109460172	XM_215259.4	Pprc1_predicted	XP_215259.4	ILMN_1367124	0000050112	S	4613	GGGAAAATACCTGGCCGCATGACTCGGTCGGAGCTGAAGCAGAGGTTCTC	1	+	251293375-251293424	1q54	PREDICTED: Rattus norvegicus peroxisome proliferative activated receptor, gamma, coactivator-related 1 (predicted) (Pprc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653383-S	ILMN_50111	LOC503181	XM_578704.1	XM_578704.1		503181	62653383	XM_578704.1	LOC503181	XP_578704.1	ILMN_1356698	0002120014	S	226	CTCCACAGCAGGCAGTATCTTCAGGCAAAAGCGAGCATAGTTCTTCTGGG					PREDICTED: Rattus norvegicus similar to Hnrpl protein (LOC503181), mRNA.					
Rattus norvegicus	RefSeq	GI_62650019-S	ILMN_266148	UBIAD1_PREDICTED	XM_001074290.1	XM_001074290.1		313706	109477704	XM_001074290.1	Ubiad1_predicted	XP_001074290.1	ILMN_1362649	0001450047	S	951	CCATTCTAACAACACCAGGGACATGGAGTCTGACCGCGAGGCTGGCATCG				5q36	PREDICTED: Rattus norvegicus UbiA prenyltransferase domain containing 1 (predicted) (Ubiad1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882001-S	ILMN_64446	LOC501488	XM_576894.2	XM_576894.2		501488	109514001	XM_576894.2	LOC501488	XP_576894.1	ILMN_1360408	0005860064	S	760	GGAATGCTGGGAGAGAAACATCATCCCCTGGCACTGAACTAAGGGAGAAG	Un|NW_047990.1	-	565707-565754:566788-566789		PREDICTED: Rattus norvegicus hypothetical LOC501488 (LOC501488), mRNA.					
Rattus norvegicus	RefSeq	GI_62718818-S	ILMN_64446	LOC501488	XM_576894.2	XM_576894.2		501488	109514001	XM_576894.2	LOC501488	XP_576894.1	ILMN_1371762	0002230739	S	1070	CCTGCTCAGCCAGCTCCTGATGGAGAACACATGTAAGAAGAAGTTGGTCC	Un|NW_047990.1	-	564298-564347		PREDICTED: Rattus norvegicus hypothetical LOC501488 (LOC501488), mRNA.					
Rattus norvegicus	RefSeq	GI_41152498-S	ILMN_290733	PLEKHG5	NM_201272.1	NM_201272.1		310999	41152498	NM_201272.1	Plekhg5	NP_958429.1	ILMN_1365588	0005130458	S	3819	TGGGCTCCAAGGCTGGGCTCTCACCGTCACCTTGGTTTGGGCTCATGAAA	5	+	169343972-169344021	5q36	Rattus norvegicus pleckstrin homology domain containing, family G (with RhoGef domain) member 5 (Plekhg5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tech	Tech
Rattus norvegicus	RefSeq	GI_62653692-S	ILMN_267418	WDR61	NM_001025743.1	NM_001025743.1		363064	71043901	NM_001025743.1	Wdr61	NP_001020914.1	ILMN_1364741	0005890079	S	782	GCACACTGAGTGGCCATGCATCCTGGGTATTGAATGTTGCGTTCTGTCCA	8	-	58270857-58270887:58272318-58272336	8q24	Rattus norvegicus WD repeat domain 61 (Wdr61), mRNA.				MGC116220; RGD1308228	MGC116220; RGD1308228
Rattus norvegicus	RefSeq	GI_8393912-S	ILMN_282422	PCCB	NM_017030.1	NM_017030.1		24624	8393912	NM_017030.1	Pccb	NP_058726.1	ILMN_1358815	0001660091	S	1966	GGATTCCGTGTGGAGTGGTGAGAGGGAAGATATAGTGGGAGGTGCTGAGG	8	-	105946277-105946326	8q31	Rattus norvegicus propionyl coenzyme A carboxylase, beta polypeptide (Pccb), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex [goid 9317] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 9062] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents [goid 9063] [evidence TAS]	Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA [goid 3989] [evidence IEA]; Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA [goid 4658] [evidence TAS]; Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA [goid 4658] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC93516	MGC93516
Rattus norvegicus	RefSeq	GI_62652915-S	ILMN_47745	RGD1308012_PREDICTED	XM_343313.3	XM_343313.3		362983	109481138	XM_343313.3	RGD1308012_predicted	XP_343314.2	ILMN_1368299	0003870609	S	1622	GGAGGCTCTGCACCTGGAAGCTATCTGTGAGGCGAACATCGAGGCTTGGA	7	-	127487260-127487276:127487362-127487394	7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) (RGD1308012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652141-S	ILMN_264456	RGD1561292_PREDICTED	XM_001081002.1	XM_001081002.1		500836	109482003	XM_001081002.1	RGD1561292_predicted	XP_001081002.1	ILMN_1361183	0007050402	S	324	GGCCAGCCTTGCAGATAACAACACAGATGTCAGGCTCATCGGGGAGGAAC				7q22	PREDICTED: Rattus norvegicus similar to TIF alpha protein (predicted) (RGD1561292_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667473	ILMN_273537	LOC688702	XM_001067988.1	XM_001067988.1		688702	109511286	XM_001067988.1	LOC688702	XP_001067988.1	ILMN_1650483	0006420672	S	327	CGAAATAAAAGAACAACACCCAAACTGGACTGTGGCGCAGGTGGCCAAGG	X	-	143866535-143866584	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC688702), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654080-S	ILMN_62333	ADAMTS7_PREDICTED	XM_236471.4	XM_236471.4		315879	109483762	XM_236471.4	Adamts7_predicted	XP_236471.4	ILMN_1354679	0003140397	S	5104	TCACGTTGTGAGCGGGATCGCCTGCCCTTCAATTTCTGTGAGACGCTGCG	8	+	95105298-95105301:95107900-95107945	8q31	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 (predicted) (Adamts7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870063-S	ILMN_64386	RGD1559710_PREDICTED	XM_221789.3	XM_221789.3		288386	109494964	XM_221789.3	RGD1559710_predicted	XP_221789.3	ILMN_1353602	0001230035	S	560	GGACCCCGTGGGAAACCAAAAATGCTTCAGAGAAAGACTGTGTAGAGCTG	12	+	1937665-1937714	12p12	PREDICTED: Rattus norvegicus similar to DC-SIGN (predicted) (RGD1559710_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718193-S	ILMN_269639	LOC688909	XM_001068783.1	XM_001068783.1		688909	109513280	XM_001068783.1	LOC688909	XP_001068783.1	ILMN_1350258	0001980022	S	697	TCCTTTCATTATGTGTGCAAGAGGAGAAACAGCAATACATCTGTGCTTCC	Un|NW_047874.1	+	2019196-2019245		PREDICTED: Rattus norvegicus hypothetical protein LOC688909 (LOC688909), mRNA.					
Rattus norvegicus	RefSeq	GI_62662661-S	ILMN_50926	RGD1562119_PREDICTED	XM_341433.3	XM_341433.3		361147	109503385	XM_341433.3	RGD1562119_predicted	XP_341434.3	ILMN_1360123	0000380064	S	1429	TTTCAAAACCCACCACCCTGCAACTTGTCTGCCGCTGACTGGGATGACGG	16	+	48996856-48996905	16q11	PREDICTED: Rattus norvegicus similar to Hypothetical MGC86034 (predicted) (RGD1562119_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577618-S	ILMN_290392	OLR53	NM_001001008.1	NM_001001008.1		405378	47577618	NM_001001008.1	Olr53	NP_001001008.1	ILMN_1357119	0001580167	S	891	GCAGATCCAGAGAGCTATTCTGAGACTTGTGTATTGTAAAGGACCTCGTG	1	+	160548713-160548762	1q32	Rattus norvegicus olfactory receptor 53 (Olr53), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr53	Olr53
Rattus norvegicus	RefSeq	GI_62661155-S	ILMN_64035	LOC361019	XM_341294.2	XM_341294.2		361019	62661155	XM_341294.2	LOC361019	XP_341295.2	ILMN_1373169	0001770484	S	62	GGAAAGAAGGCCAACGGGAAGAAGTCCCGCCGTGGTCAAGAAACAAGAGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC361019), mRNA.					
Rattus norvegicus	RefSeq	GI_13929111-S	ILMN_278001	TRIM3	NM_031786.1	NM_031786.1		83616	13929111	NM_031786.1	Trim3	NP_113974.1	ILMN_1365391	0006590670	S	2773	AGTCCCTCTGGTTGGCTCCCTAACACCCCATACACACTGACAGAGACAGC	1	-	163337653-163337702	1q33	Rattus norvegicus tripartite motif-containing 3 (Trim3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Berp; Rnf22	Berp; Rnf22
Rattus norvegicus	RefSeq	GI_18426825-S	ILMN_293589	FAF1	NM_130406.1	NM_130406.1		140657	18426825	NM_130406.1	Faf1	NP_569090.1	ILMN_1354236	0004850601	S	2198	AAACATGACTGAGAGGTGGAGGCAGCCACTCCTGACAAGCCAACGGCACG	5	+	131394473-131394522	5q35	Rattus norvegicus Fas (TNFRSF6) associated factor 1 (Faf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus [goid 7253] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein complex assembly [goid 31334] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Stops, prevents or reduces the activity of chaperones of the Hsp70/Hsc70 class [goid 30191] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576068-S	ILMN_272344	OLR1415	NM_001000781.1	NM_001000781.1		405059	47576068	NM_001000781.1	Olr1415	NP_001000781.1	ILMN_1365829	0005690053	S	768	CATCTACATGACACCCACCTCTTCCCACACACCCGACCAGGACCAGGTAG	10	-	44131733-44131782	10q22	Rattus norvegicus olfactory receptor 1415 (Olr1415), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1415	Olr1415
Rattus norvegicus	RefSeq	GI_52851388-S	ILMN_273493	OSMR	NM_001005384.1	NM_001005384.1		310132	52851388	NM_001005384.1	Osmr	NP_001005384.1	ILMN_1359159	0003840176	S	2770	AAGGACAGTCTTGTCACGAACCCACCCATGCCAGTGCACGGTTCAGAGTA	2	-	56080768-56080817	2q16	Rattus norvegicus oncostatin M receptor (Osmr), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with oncostatin-M to initiate a change in cell activity [goid 4924] [evidence ISS]; Combining with oncostatin-M to initiate a change in cell activity [goid 4924] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648249-S	ILMN_277817	TAS2R102_PREDICTED	XM_001070720.1	XM_001070720.1		500347	109474368	XM_001070720.1	Tas2r102_predicted	XP_001070720.1	ILMN_1350286	0001570348	S	602	CCTTGTGGAAACATCTCCGGAAGATGCAGCTCAGTTCCAGAGGACATGGA				4q43	PREDICTED: Rattus norvegicus taste receptor Tas2r102 (predicted) (Tas2r102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036646-S	ILMN_288746	CML1	NM_021668.2	NM_021668.2		59300	51036646	NM_021668.2	Cml1	NP_067700.1	ILMN_1361511	0003060687	S	2025	GCCTGTGCCTTTCCAGTGATGAAGCTGCCTTTGAGTCATCCATGCTCCTG	4	-	120059369-120059418	4q34	Rattus norvegicus camello-like 1 (Cml1), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence NAS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34876223-S	ILMN_284020	CUL2_PREDICTED	XM_001057445.1	XM_001057445.1		361258	109505915	XM_001057445.1	Cul2_predicted	XP_001057445.1	ILMN_2039226	0005720184	S	2128	GGATACACCACAAGAACTGGAACAGACTAGAAGTGCTGTAGATGAGGACC				17q12.1	PREDICTED: Rattus norvegicus cullin 2 (predicted) (Cul2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649447-S	ILMN_52200	ATPAF1_PREDICTED	XM_233402.3	XM_233402.3		313510	62649447	XM_233402.3	Atpaf1_predicted	XP_233402.3	ILMN_1370313	0002260605	S	611	TGATGTGATCTGGAACCGGGCTCAGTCCTGCCCAACAAACGTTGCCGAGG				5q36	PREDICTED: Rattus norvegicus ATP synthase mitochondrial F1 complex assembly factor 1 (predicted) (Atpaf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33667076-S	ILMN_295320	OGT	NM_017107.1	NM_017107.1		26295	33667076	NM_017107.1	Ogt	NP_058803.1	ILMN_1352116	0003120671	S	3435	CACAGGAGAATTGCCCCTATACCTGAGCCTCAACCTTCTGGGGGAAAGGG	X	+	89764361-89764410	Xq31	Rattus norvegicus O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	NCOAT	NCOAT
Rattus norvegicus	RefSeq	GI_17978456-S	ILMN_299555	PIP5K2C	NM_080480.1	NM_080480.1		140607	17978456	NM_080480.1	Pip5k2c	NP_536728.1	ILMN_1358412	0002340064	S	2318	CCCCAGAGAGGAGTCAGAGCCATAACTCAGTCACCCAGTCCCCTCCAAAG	7	-	67152279-67152328	7q22	Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type II, gamma (Pip5k2c), mRNA.					
Rattus norvegicus	RefSeq	GI_47578056-S	ILMN_282493	OLR10	NM_001000115.1	NM_001000115.1		293072	47578056	NM_001000115.1	Olr10	NP_001000115.1	ILMN_1366322	0004850725	S	342	GTTGGCTGTGATGGCTTATGACTGCTATGTGGCCATATGCTTCCCTCTGC	1	+	141152295-141152344	1q31	Rattus norvegicus olfactory receptor 10 (Olr10), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr10	Olr10
Rattus norvegicus	RefSeq	GI_62649095-S	ILMN_56852	LOC298111	XM_233029.3	XM_233029.3		298111	62649095	XM_233029.3	LOC298111	XP_233029.3	ILMN_1363507	0001690605	S	645	CTCAAGAAAACAGGAACCAGTGCAAGCCTGACCCTGGTCTGTGGCCATGC				5q24	PREDICTED: Rattus norvegicus similar to alpha-2u-globulin precursor (clone 36) - rat (LOC298111), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638766-S	ILMN_65572	LOC502278	XM_577739.1	XM_577739.1		502278	62638766	XM_577739.1	LOC502278	XP_577739.1	ILMN_1354091	0003610577	S	2063	ATCACAAATAGCCCCATTTGAGGATAAGCCCATCCCCAGCAGGGTCCGGC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502278), mRNA.					
Rattus norvegicus	RefSeq	GI_62666208-S	ILMN_63248	RGD1562893_PREDICTED	XM_577935.2	XM_577935.2		502454	109509550	XM_577935.2	RGD1562893_predicted	XP_577935.2	ILMN_1360770	0002340735	S	412	GCTACCAGGGAGCAGCTGGGCCAGAGGACATGTTTGTCTGAGGACACTAT	20	+	38225709-38225758	20q12	PREDICTED: Rattus norvegicus similar to putative homeobox protein (predicted) (RGD1562893_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650746-S	ILMN_52460	PRPF39_PREDICTED	XM_234238.4	XM_234238.4		314171	109478212	XM_234238.4	Prpf39_predicted	XP_234238.4	ILMN_1355423	0006220324	S	1698	TATCAGAATCCCTGGAATTACGGACAGTATTACCCTCCACCTCCAACCTG	6	+	86410062-86410111	6q24	PREDICTED: Rattus norvegicus PRP39 pre-mRNA processing factor 39 homolog (yeast) (predicted) (Prpf39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658338-S	ILMN_267280	LOC498131	XM_001070954.1	XM_001070954.1		498131	109494994	XM_001070954.1	LOC498131	XP_001070954.1	ILMN_1364855	0000730397	S	179	GCCACCTCCGCGCCGCCACAGCTTTAGAAAACACCTCTACCTCCTGCGCG	12	+	4256734-4256783	12p12	PREDICTED: Rattus norvegicus similar to OTTHUMP00000018227 (LOC498131), mRNA.					
Rattus norvegicus	RefSeq	GI_51948503-S	ILMN_269154	TRAF4AF1	NM_001004264.1	NM_001004264.1		311325	51948503	NM_001004264.1	Traf4af1	NP_001004264.1	ILMN_1371160	0001340619	S	1338	ACGTGCGCTGTGCGGGAGCTGTCACTTCAAGCTATGCTGTCCCCTTTGTC	3	+	105341811-105341860	3q35	Rattus norvegicus TRAF4 associated factor 1 (Traf4af1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94986; C15orf23	MGC94986; C15orf23
Rattus norvegicus	RefSeq	GI_27664539	ILMN_265989	TRAPPC6B_PREDICTED	XM_001079724.1	XM_001079724.1		299075	109479423	XM_001079724.1	Trappc6b_predicted	XP_001079724.1	ILMN_1649751	0001450142	S	674	GGCTCCTGGGCAGAGCATTGCGCGTCCTGATTTCACCTTCTCGTTGGATA				6q23	PREDICTED: Rattus norvegicus trafficking protein particle complex 6B (predicted) (Trappc6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866284	ILMN_64098	LOC302122	XM_229695.2	XM_229695.2		302122	34866284	XM_229695.2	LOC302122	XP_229695.2	ILMN_1650853	0002320056	S	282	GAACAGTGTGGCGGCGGCAGAAGAGGAGGAGACTGTAGAGGCTGACGTGC				6q24	PREDICTED: Rattus norvegicus similar to M phase phosphoprotein 6 (LOC302122), mRNA.					
Rattus norvegicus	RefSeq	GI_62648107-S	ILMN_52531	CECR5_PREDICTED	XM_232249.4	XM_232249.4		312680	109472564	XM_232249.4	Cecr5_predicted	XP_232249.4	ILMN_1356323	0004760056	S	2178	GCTTGGATGTTGACTGTCTTGCAGAGGCCCGTGTGTGAAAGGCTCGTCCC	4	-	156892379-156892428	4q42	PREDICTED: Rattus norvegicus cat eye syndrome chromosome region, candidate 5 homolog (human) (predicted) (Cecr5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665588	ILMN_269182	RGD1562652_PREDICTED	XR_009519.1	XR_009519.1		499402	109520452	XR_009519.1	RGD1562652_predicted		ILMN_1650140	0005220152	S	510	CGAGTGGGAGCAGGATGGTGTAGCTGAGGAATACAAGGCCTACCTGGAGG					PREDICTED: Rattus norvegicus similar to class I histocompatibility antigen alpha chain - cotton-top tamarin (predicted) (RGD1562652_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647812-S	ILMN_61608	LOC366654	XM_345685.2	XM_345685.2		366654	62647812	XM_345685.2	LOC366654	XP_345686.2	ILMN_1370526	0002120484	S	493	TGATGGTGGAAGAACTCAGTGCTCCTAAGTTCCTGCAACCTGGAAGTCAG					PREDICTED: Rattus norvegicus similar to Glutathione S-transferase 8 (GST 8-8) (Chain 8) (GST class-alpha) (LOC366654), mRNA.					
Rattus norvegicus	RefSeq	GI_62638332	ILMN_66935	LOC308929	XM_219235.3	XM_219235.3		308929	62638332	XM_219235.3	LOC308929	XP_219235.3	ILMN_1649768	0001230021	S	372	TCCGTGGCTATCACCAAACAGTGGCTGGTTAGGCTTTAGTGCACATGTGG					PREDICTED: Rattus norvegicus similar to chromosome 6 open reading frame 58 (LOC308929), mRNA.					
Rattus norvegicus	RefSeq	GI_62657737-S	ILMN_65259	LOC501772	XM_577171.1	XM_577171.1		501772	62657737	XM_577171.1	LOC501772	XP_577171.1	ILMN_1357650	0000630215	S	846	GGAGCACTAACCAGGAGCGAGAGTGGAGCACTAACCAGGAGTGAGAGTGG					PREDICTED: Rattus norvegicus similar to cell wall protein Awa1p (LOC501772), mRNA.					
Rattus norvegicus	RefSeq	GI_62643704-S	ILMN_60789	RGD1563262_PREDICTED	XM_342269.3	XM_342269.3		361972	109464991	XM_342269.3	RGD1563262_predicted	XP_342270.3	ILMN_1370612	0001240048	S	699	CCTAAGTCCAAGTGGCGTTGACGTTTCCCAAGAGCATACTCCCCGAGGGC	2	+	176485714-176485718:176485719-176485763	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9930117H01 gene (predicted) (RGD1563262_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559985-S	ILMN_60673	PPP2R2B	NM_022209.2	NM_022209.2		60660	76880454	NM_022209.2	Ppp2r2b	NP_071545.2	ILMN_1363770	0005550156	S	1339	CGTCGGGGGCAAGCGAAGAAAAGATGAGATCAGTGTTGACAGTCTGGACT	18	-	35866330-35866379	18p11	Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform (Ppp2r2b), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]; A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]; Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]	Pppr2b2	Pppr2b2
Rattus norvegicus	RefSeq	GI_62663236-S	ILMN_277723	HIGD2A_PREDICTED	XM_001070385.1	XM_001070385.1		290999	109505480	XM_001070385.1	Higd2a_predicted	XP_001070385.1	ILMN_1360989	0006450647	S	73	AGGACCGGGAGCCGCCATACCGACCCGCACAAAACAAGGTAGGACAAAAA				17p14	PREDICTED: Rattus norvegicus HIG1 domain family, member 2A (predicted) (Higd2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576640-S	ILMN_266001	OLR855	NM_001000409.1	NM_001000409.1		298468	47576640	NM_001000409.1	Olr855	NP_001000409.1	ILMN_1367166	0000610053	S	899	TGAAAAGGGCTTTCCTCAAGGTGGTGGGCAGCAGCAAAGGGTCAGGGTGA	5	+	139135682-139135731	5q36	Rattus norvegicus olfactory receptor 855 (Olr855), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr855	Olr855
Rattus norvegicus	RefSeq	GI_62642606-S	ILMN_267447	RGD1565407_PREDICTED	XM_001065228.1	XM_001065228.1		290628	109503904	XM_001065228.1	RGD1565407_predicted	XP_001065228.1	ILMN_2039010	0004880500	S	181	CGGCCGCACTGCCAGCCCAGGCCCAGTGAGCTCCGCACGAGGCCCCGGAA				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430098E02 (predicted) (RGD1565407_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27730096-S	ILMN_267447	RGD1565407_PREDICTED	XM_001065228.1	XM_001065228.1		290628	109503904	XM_001065228.1	RGD1565407_predicted	XP_001065228.1	ILMN_2039260	0004060544	S	359	GGGACCGAAGCCGCTATGCCGCAGTGTTTCAGGACCAGTACGAAGAGTTC				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430098E02 (predicted) (RGD1565407_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605835-S	ILMN_290346	DIS3L	NM_001008380.1	NM_001008380.1		363077	56605835	NM_001008380.1	Dis3l	NP_001008381.1	ILMN_1361029	0004050601	S	2973	CCCTCCTGCTGAAGAGTGAGCTGGTGAAGGAAGTAACCCGATCTGTGGAG	8	-	68505205-68505254	8q24	Rattus norvegicus DIS3 mitotic control homolog (S. cerevisiae)-like (Dis3l), mRNA.			Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA [goid 4540] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94911	MGC94911
Rattus norvegicus	RefSeq	GI_47577204-S	ILMN_265053	OLR610	NM_001000336.1	NM_001000336.1		295836	47577204	NM_001000336.1	Olr610	NP_001000336.1	ILMN_1353068	0006980170	S	435	GCTAGTAGCTGGGACTTACATGATTGGTGGACTATGTGCTGTGATACTCA	3	-	71942959-71943008	3q24	Rattus norvegicus olfactory receptor 610 (Olr610), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr610	Olr610
Rattus norvegicus	RefSeq	GI_16758593-S	ILMN_273978	PLCE1	NM_053758.1	NM_053758.1		114633	16758593	NM_053758.1	Plce1	NP_446210.1	ILMN_1362475	0001340358	S	7990	GCTTGCTGACCCAGCTTGGGAGAACTGGGAGCCAAAGGCACAGAGGTTAG	1	+	243103115-243103164	1q53	Rattus norvegicus phospholipase C, epsilon 1 (Plce1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney [goid 32835] [evidence ISS]; The progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney [goid 32835] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence ISS]; Any process that modulates the frequency, rate or extent of Ras protein signal transduction [goid 46578] [evidence ISS]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence ISS]	Plce	Plce
Rattus norvegicus	RefSeq	GI_62642707-S	ILMN_57285	LOC499502	XM_574826.1	XM_574826.1		499502	62642707	XM_574826.1	LOC499502	XP_574826.1	ILMN_1367316	0003850170	S	312	GGGCCTAATATTCGAAGTCCAGCGTTGAGGAAACACCTTAAAGAGCTGCG					PREDICTED: Rattus norvegicus similar to zinc finger protein 483 (LOC499502), mRNA.					
Rattus norvegicus	RefSeq	GI_62655359-S	ILMN_65254	LOC367308	XM_346070.2	XM_346070.2		367308	62655359	XM_346070.2	LOC367308	XP_346071.2	ILMN_1369393	0004610368	S	1437	GTTACAACCAGCCTCAGCCTAACAGGATACCCAGCAGCCAAGGGACTGCC				9q35	PREDICTED: Rattus norvegicus similar to alkaline phosphatase (EC 3.1.3.1) precursor, placental-like - human (LOC367308), mRNA.					
Rattus norvegicus	RefSeq	GI_34858249-S	ILMN_55175	LOC365873	XM_345252.1	XM_345252.1		365873	34858249	XM_345252.1	LOC365873	XP_345253.1	ILMN_1355924	0000840603	S	3	GCGATAAGGAAGTGGAGAACCAATGGAGAGGAAGACACTGACATCTGTCG				2q34	PREDICTED: Rattus norvegicus similar to ubiquitin A-52 residue ribosomal protein fusion product 1 (LOC365873), mRNA.					
Rattus norvegicus	RefSeq	GI_12621109-S	ILMN_263078	BCHE	NM_022942.1	NM_022942.1		65036	12621109	NM_022942.1	Bche	NP_075231.1	ILMN_1349912	0005390484	S	1591	CCCAATGGGACTCAGGGCAATAGCACAGTGTGGCCTGTCTTCACAAGTAC	2	-	164345129-164345178	2q32	Rattus norvegicus butyrylcholinesterase (Bche), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence ISS]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IDA]; The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 19695] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active [goid 43279] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50805] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus [goid 51593] [evidence IDA]	Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence IDA]; Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence NAS]; Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence IDA]; Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence IEA]; Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium [goid 33265] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62662976-S	ILMN_283552	LOC498664	NM_001017508.1	NM_001017508.1		498664	62945371	NM_001017508.1	LOC498664	NP_001017508.1	ILMN_1352454	0004730215	S	1378	TTGGTGCCTCCTGGGTTGACAGGGGATACGAAGGCCTCCTCCTGAGGCTT	16	-	82500943-82500992	16q12.5	Rattus norvegicus similar to hypothetical protein MGC35169 (LOC498664), mRNA.					
Rattus norvegicus	RefSeq	GI_62638487-S	ILMN_51995	IPCEF1	XM_341752.2	XM_341752.2		361474	62638487	XM_341752.2	ipcef1	XP_341753.2	ILMN_1365246	0001240537	S	1590	CAGGACCCTGAAGTCACCCCTCAGGAAATCATGAACCCCACCTCTTCTGA					PREDICTED: Rattus norvegicus interactor protein for cytohesin exchange factors 1 (ipcef1), mRNA.					
Rattus norvegicus	RefSeq	GI_11067406-I	ILMN_283541	EPB4.1L1	NM_021681.1	NM_021681.1		59317	11067406	NM_021681.1	Epb4.1l1	NP_067713.1	ILMN_1375679	0000770484	I	3695	GATTCAGGCTGTGAAACCACGCTGGAGGAAGCTACTGGGAGCAAATCCGG	3	+	146923762-146923800:146924292-146924302	3q42	Rattus norvegicus erythrocyte protein band 4.1-like 1 (Epb4.1l1), transcript variant 2, mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	4.1N	4.1N
Rattus norvegicus	RefSeq	GI_28460697-S	ILMN_263544	CYP4A1	NM_175837.1	NM_175837.1		170544	28460697	NM_175837.1	Cyp4a1	NP_787031.1	ILMN_1373736	0001190593	S	2	TGTGAGAGTGAGGGCAGCTACTGAGGAGTGGCTGCACCATGAGCGTCTCT	5	+	135901625-135901662:135901663-135901674	5q36	Rattus norvegicus cytochrome P450, family 4, subfamily a, polypeptide 1 (Cyp4a1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence IMP]; The chemical reactions and pathways resulting in the formation of icosanoids, any of a group of C20 polyunsaturated fatty acids [goid 46456] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA];  [goid 8391] [evidence IDA];  [goid 8391] [evidence IMP];  [goid 8393] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: octane + reduced rubredoxin + O2 = 1-octanol + oxidized rubredoxin + H2O [goid 18685] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp4a1	Cyp4a1
Rattus norvegicus	RefSeq	GI_47577444-S	ILMN_290077	OLR466	NM_001000298.1	NM_001000298.1		295736	47577444	NM_001000298.1	Olr466	NP_001000298.1	ILMN_1359774	0000630347	S	428	CTCTCGTCGCATTTCCTTATGTGTTTGGCTTCCTGAATGGGCTATCTCAG	3	+	69137574-69137623	3q24	Rattus norvegicus olfactory receptor 466 (Olr466), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr466	Olr466
Rattus norvegicus	RefSeq	GI_58866031-S	ILMN_275470	XKR9	NM_001012229.1	NM_001012229.1		497099	58866031	NM_001012229.1	Xkr9	NP_001012229.1	ILMN_1369478	0004920040	S	1758	TGTGTTGCCAAGGATTAGGCCCTGTGCATGTTATCCCACCACTGAGTTGC	5	-	4733282-4733331	5q11	Rattus norvegicus X Kell blood group precursor related family member 9 homolog (Xkr9), mRNA.					
Rattus norvegicus	RefSeq	GI_62718854-S	ILMN_69591	LOC501500	XM_576901.1	XM_576901.1		501500	62718854	XM_576901.1	LOC501500	XP_576901.1	ILMN_1350049	0002190600	S	207	CCACAAGACAGTGGAACAGGATGCCGTGGCCTACCACACTAGGTCTACAG					PREDICTED: Rattus norvegicus LOC501500 (LOC501500), mRNA.					
Rattus norvegicus	RefSeq	GI_62649875-S	ILMN_52023	LOC500570	XM_580085.1	XM_580085.1		500570	62649875	XM_580085.1	LOC500570	XP_580085.1	ILMN_1364733	0000510204	S	411	GAGCATGAGGTAAGGCTCAGTGGCAGAGTTCTTGCCTGCCCAGCATGTGC					PREDICTED: Rattus norvegicus LOC500570 (LOC500570), mRNA.					
Rattus norvegicus	RefSeq	GI_62650431-I	ILMN_59371	DTNB_PREDICTED	XM_575997.1	XM_575997.1		362715	62650431	XM_575997.1	Dtnb_predicted	XP_575997.1	ILMN_1375274	0006370128	S	5234	TAGCCGTGACCACCCTCTCATTGGGTTGCTAGTGTCGTGGAACTCTGGGC				6q14	PREDICTED: Rattus norvegicus dystrobrevin, beta (predicted) (Dtnb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648660-S	ILMN_57760	LOC497802	XM_579608.1	XM_579608.1		497802	62648660	XM_579608.1	LOC497802	XP_579608.1	ILMN_1370445	0002690333	S	1865	GGTGCCTATGGTGCTAAGTGCTTTTGCATGTTGAATGCTCCTGGATTGTT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_080785 (LOC497802), mRNA.					
Rattus norvegicus	RefSeq	GI_62655282-S	ILMN_298247	RHBDD1	NM_001024891.1	NM_001024891.1		316557	67846059	NM_001024891.1	Rhbdd1	NP_001020062.1	ILMN_1362705	0005910603	S	1072	GAGGAGCAGCTGGAACGAGCGTTAAGAGCCAGCATCTGGGACCGAGGAAA	9	+	81728228-81728273:81778513-81778516	9q34	Rattus norvegicus rhomboid domain containing 1 (Rhbdd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC114461	MGC114461
Rattus norvegicus	RefSeq	GI_8393420-S	ILMN_296338	GCM1	NM_017186.1	NM_017186.1		29394	8393420	NM_017186.1	Gcm1	NP_058882.1	ILMN_1351271	0005080154	S	1205	AACCCGGCCATCATCCCTTGTGGACCAATCCCGGAGGTGAGCCTTACGAA	8	+	83031916-83031965	8q31	Rattus norvegicus glial cells missing homolog 1 (Drosophila) (Gcm1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The commitment of a cells to a specific astrocyte fate and its restriction to develop only into an astrocyte [goid 60018] [evidence ISS]; The commitment of a cells to a specific astrocyte fate and its restriction to develop only into an astrocyte [goid 60018] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Gcma	Gcma
Rattus norvegicus	RefSeq	GI_62651594-S	ILMN_49356	LOC298977	XM_216701.4	XM_216701.4		298977	109478828	XM_216701.4	LOC298977	XP_216701.3	ILMN_1370582	0003850041	S	839	CCAAGGCAGAGCTAAGGACTCACATGGAGAACGCTAAACACACCTCACTG	6|NW_047770.1	-	104573-104622		PREDICTED: Rattus norvegicus similar to zinc finger protein 277 isoform 1 (LOC298977), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662185-S	ILMN_292230	NISCH	XM_001058707.1	XM_001058707.1		306255	109503761	XM_001058707.1	Nisch	XP_001058707.1	ILMN_1369272	0002760239	S	4554	GAGGTGCAGTGGCAGGTGTTTGTGCCCAGTGCTGAGAGCCGAGAAAAGCT				16p16	PREDICTED: Rattus norvegicus nischarin (Nisch), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Organelle consisting of networks of 60nm tubules organized around the microtubule organizing centre in some cell types. They transport receptors from late endosomes back to the plasma membrane for recycling and are also involved in membrane trafficking [goid 55037] [evidence IEA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; A series of molecular signals within the cell that are mediated by a member of the Rac family of proteins switching to a GTP-bound active state [goid 16601] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IEA]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence IMP]; The regulated release of norepinephrine by a cell or group of cells. Norepinephrine is a catecholamine and it acts as a hormone and as a neurotransmitter of most of the sympathetic nervous system [goid 48243] [evidence IMP]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with a biogenic amine to initiate a change in cell activity [goid 8227] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_32996714-S	ILMN_282664	NIT1	NM_182668.1	NM_182668.1		289222	32996714	NM_182668.1	Nit1	NP_872609.1	ILMN_1355488	0001230039	S	961	GCCAACTGTGAGGTGATGCTACCGTGACTTGTAGGCTGGACCCAAGCACG	13	-	87242824-87242873	13q24	Rattus norvegicus nitrilase 1 (Nit1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]; The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]	Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]	MGC95151	MGC95151
Rattus norvegicus	RefSeq	GI_57222293	ILMN_299530	RGD1304827	NM_001009437.1	NM_001009437.1		316091	57222293	NM_001009437.1	RGD1304827	NP_001009437.1	ILMN_1530395	0004810131	S	241	TTCAAGTGGCTCTGCTACTCCAATGAGGCCGAAGAATTCATCTTTTTCCA	8	+	126952534-126952583	8q32	Rattus norvegicus hypothetical LOC316091 (RGD1304827), mRNA.			Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Ago61	Ago61
Rattus norvegicus	RefSeq	GI_62645271-S	ILMN_289715	RGD1559457_PREDICTED	XM_001061854.1	XM_001061854.1		366078	109470089	XM_001061854.1	RGD1559457_predicted	XP_001061854.1	ILMN_1352272	0006510075	S	1372	AAACACATTAAGACGCACAACGGGGGCGGCGGGGGCAAAAAGGGCAGCGA				3q22	PREDICTED: Rattus norvegicus similar to SP9 (predicted) (RGD1559457_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424309-S	ILMN_280977	SLC31A1	NM_133600.1	NM_133600.1		171135	19424309	NM_133600.1	Slc31a1	NP_598284.1	ILMN_1370936	0006550280	S	1087	GGTGGCTGGGGTTCTGGGTCAGTGATGGAACAGGATTGATGGCAATTAGG	5	+	79385659-79385708	5q24	Rattus norvegicus solute carrier family 31 (copper transporters), member 1 (Slc31a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence IEA]	Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]	Ctr1; LRRGT00200	Ctr1; LRRGT00200
Rattus norvegicus	RefSeq	GI_62661374-A	ILMN_272274	JPH4	NM_001003711.1	NM_001003711.1		445271	51172603	NM_001003711.1	Jph4	NP_001003711.1	ILMN_1376707	0004540500	S	1707	CACCACTCCAGTTTTGAGGGGCCTGTCTTCAAGGGGTCCTGATGCTGGGT	15	-	33215564-33215613	15p13	Rattus norvegicus junctophilin 4 (Jph4), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_51948481-S	ILMN_269886	DEK	NM_001004255.1	NM_001004255.1		306817	51948481	NM_001004255.1	Dek	NP_001004255.1	ILMN_1370172	0006180162	S	2508	CTTCGCAATAAAGAATAAATCAATGTTTTAAGTTTCTTGTATTTAAAAAA	17	+	23655462-23655507	17p13	Rattus norvegicus DEK oncogene (Dek), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity [goid 42393] [evidence IEA]; Interacting selectively with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity [goid 42393] [evidence ISS]	MGC94795	MGC94795
Rattus norvegicus	Unigene	Rn.73491	ILMN_161488	RN.73491	Rn.73491		Rn.73491		20424582	BQ208117			ILMN_1530194	0001940397	S	60	TCTTTTGCTCATTTGTCCTGTTGCAGTTGAATAAACTATAATGACTTCAT					UI-R-EP0-coa-o-11-0-UI.s1 UI-R-EP0 Rattus norvegicus cDNA clone UI-R-EP0-coa-o-11-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_34858196-S	ILMN_53043	LOC295201	XM_227358.2	XM_227358.2		295201	34858196	XM_227358.2	LOC295201	XP_227358.2	ILMN_1371062	0002650056	S	967	CTGAGACCTTGGAGTGGAAGTCAATGACCATTCTAGCAGCTGGCTCTCCA				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (LOC295201), mRNA.					
Rattus norvegicus	RefSeq	GI_27545427-S	ILMN_300381	MAPK15	NM_173331.1	NM_173331.1		286997	27545427	NM_173331.1	Mapk15	NP_775453.1	ILMN_1349872	0005420053	S	1661	GAAGGATGTTTGGCATCTCGGTCTCGCAGGGGGCCCAGGGTGCAGCCAGA	7	+	114031792-114031819:114031820-114031841	7q34	Rattus norvegicus mitogen-activated protein kinase 15 (Mapk15), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Erk7	Erk7
Rattus norvegicus	RefSeq	GI_6978802-S	ILMN_288602	ELA2A	NM_012553.1	NM_012553.1		24332	6978802	NM_012553.1	Ela2a	NP_036685.1	ILMN_1364164	0000540132	S	719	TGCACGGTATTGTGAGCTTTGGCTCCACTCTGGGCTGCAACTACCCCCGT	5	-	160725657-160725706	5q36	Rattus norvegicus elastase 2A (Ela2a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Elaii1; ELAII	Elaii1; ELAII
Rattus norvegicus	RefSeq	GI_34881802-S	ILMN_272895	LOC688646	XM_001067739.1	XM_001067739.1		688646	109511279	XM_001067739.1	LOC688646	XP_001067739.1	ILMN_1372054	0004150402	S	3	GGGAAAAGACAGCAAACGAAGACCGAAGGTGAACGTCTCTCCTTATGTCC	X	-	143158985-143159034	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC688646), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642975-S	ILMN_47906	C7	XM_226803.4	XM_226803.4		117517	109464452	XM_226803.4	C7	XP_226803.4	ILMN_1369229	0005910008	S	2285	GGCAGAGCATCTCCATCACAGCCATAAAGCCCTGTGCCCAAGAAGTCCAG	2	-	54147536-54147585	2q16	PREDICTED: Rattus norvegicus complement component 7 (C7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow [goid 5579] [evidence TAS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The regulation of the levels, transport, and metabolism of sodium ions within a cell or between a cell and its external environment [goid 6883] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62645572-S	ILMN_65410	RGD1564603_PREDICTED	XM_575208.2	XM_575208.2		499866	109468641	XM_575208.2	RGD1564603_predicted	XP_575208.1	ILMN_1370508	0006200739	S	1405	TGAACATCACCCTGAGGTAGATCATGTTAGTGCCCCCGAGGAAGGCTTTC	3	+	103365640-103365689	3q35	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38426 (predicted) (RGD1564603_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454201-S	ILMN_300651	LOC288913	NM_198728.1	NM_198728.1		288913	38454201	NM_198728.1	LOC288913	NP_942023.1	ILMN_1369994	0001570364	S	572	CCAGTGAGGCACCACCTCCTCCTGTCACACCAGTAATCAGAGCCACTTGG	19	+	25601496-25601545	19q11	Rattus norvegicus similar to LEYDIG CELL TUMOR 10 KD PROTEIN (LOC288913), mRNA.					
Rattus norvegicus	RefSeq	GI_62639409-S	ILMN_53726	RHPN2_PREDICTED	XM_238787.4	XM_238787.4		308516	109458579	XM_238787.4	Rhpn2_predicted	XP_238787.3	ILMN_1370453	0002650053	S	1909	GAAGAGCTTTGGGGGAGAAGAGGTGGAGATGAAGGTCGTGAGCCTCCTGG	1	+	87910251-87910300	1q21	PREDICTED: Rattus norvegicus rhophilin, Rho GTPase binding protein 2 (predicted) (Rhpn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665568-S	ILMN_55696	DSTN_PREDICTED	XM_215862.4	XM_215862.4		296197	109509099	XM_215862.4	Dstn_predicted	XP_215862.3	ILMN_1362105	0003170390	S	563	GCGTTCGAAGGATCCCCTGTGTAGATTATCAGTCAGTGCCACGAATTGAA	20	+	661898-661921:661922-661947	20p12	PREDICTED: Rattus norvegicus destrin (predicted) (Dstn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647874-S	ILMN_264430	LOC500270	XM_575620.1	XM_575620.1		500270	62647874	XM_575620.1	LOC500270	XP_575620.1	ILMN_1358463	0002320632	S	43	ATGCAAGTCAGAGCAGCCAGCGGCCATCAAGGACTGTGCAGCTGTGTCCC	4	+	134545351-134545400	4q34	PREDICTED: Rattus norvegicus 796 (LOC500270), mRNA.					
Rattus norvegicus	RefSeq	GI_47576804-S	ILMN_275226	OLR194	NM_001000948.1	NM_001000948.1		405293	47576804	NM_001000948.1	Olr194	NP_001000948.1	ILMN_1370449	0001980725	S	865	GCCCTCAATCCTCTTGTTTATGGGGTGAAGACTCGACAGATCCGCCAACG	1	-	162927281-162927330	1q33	Rattus norvegicus olfactory receptor 194 (Olr194), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr194	Olr194
Rattus norvegicus	RefSeq	GI_62648272-S	ILMN_280556	PBP2	XM_001072018.1	XM_001072018.1		246145	109474402	XM_001072018.1	Pbp2	XP_001072018.1	ILMN_1361086	0000450035	S	950	ACACAGTGGCTCCGTGCTCTCAGATATGGTTTTAGGTCCTGTCTCCCACC				4q43	PREDICTED: Rattus norvegicus phosphatidylethanlomine binding protein 2 (Pbp2), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]	Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_34866290-S	ILMN_64185	LOC302118	XM_229690.2	XM_229690.2		302118	34866290	XM_229690.2	LOC302118	XP_229690.2	ILMN_1355518	0004560180	S	529	GGACATGCAAGAAGGAGGAAAGAAGGCAGTCAATGCATAGTGGGGAATGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC302118), mRNA.					
Rattus norvegicus	RefSeq	GI_46409655-S	ILMN_295133	NOS3	NM_021838.2	NM_021838.2		24600	46409655	NM_021838.2	Nos3	NP_068610.1	ILMN_1361329	0002100035	S	3671	GACCAAGGCAAACCACCCTCTCTGGAATGCCCACAGCATCAGTTGCGAGG	4	-	6159079-6159128	4q11	Rattus norvegicus nitric oxide synthase 3, endothelial cell (Nos3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence ISS]; The process by which endothelin modulates the force with which blood passes through the circulatory system. Endothelin is a hormone that is released by the endothelium, and it is a vasoconstrictor [goid 3100] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6527] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IMP]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle hyperplasia [goid 14740] [evidence ISS]; A process, occurring in smooth muscle, in which there is an increase in cell number by cell division, often leading to an increase in the size of an organ [goid 14806] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of guanylate cyclase activity [goid 31284] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence IEA]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface [goid 34405] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence IMP]; Any process that modulates the size of blood vessels [goid 50880] [evidence ISS]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence IEA]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51926] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51926] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein stimulus [goid 55094] [evidence IEP]	Interacting selectively with monomeric actin, also known as G-actin [goid 3785] [evidence ISS]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IMP]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IDA]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IEA]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a tetrahydrobiopterin, 5,6,7,8-tetrahydrobiopterin or a derivative thereof; tetrahydrobiopterins are enzyme cofactors that carry electrons in redox reactions [goid 34617] [evidence ISS]; Interacting selectively with 2-amino-5-(carbamimidamido)pentanoic acid [goid 34618] [evidence ISS]	eNos	eNos
Rattus norvegicus	RefSeq	GI_62662475-S	ILMN_53679	RGD1563748_PREDICTED	XM_214327.4	XM_214327.4		290675	109503235	XM_214327.4	RGD1563748_predicted	XP_214327.4	ILMN_1373293	0002450605	S	443	CACAGGCCGTGCAAGTGTCAAGCAGGTGTGTGAATGTGGATAATGTCAGC	16	+	20441157-20441181:20456829-20456853	16p14	PREDICTED: Rattus norvegicus similar to ankyrin-like protein (predicted) (RGD1563748_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662485-S	ILMN_53679	RGD1563748_PREDICTED	XM_214327.4	XM_214327.4		290675	109503235	XM_214327.4	RGD1563748_predicted	XP_214327.4	ILMN_2039148	0006060181	S	986	CTGCAGTTGAGCCTGTGCCGACTAAGTCCACCAATGCCGCTGACAGTCTG	16	+	20463182-20463231	16p14	PREDICTED: Rattus norvegicus similar to ankyrin-like protein (predicted) (RGD1563748_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650564-S	ILMN_268876	FAM110C	NM_001025051.1	NM_001025051.1		500638	68163530	NM_001025051.1	Fam110c	NP_001020222.1	ILMN_1367447	0001980152	S	2983	CTGTATCACGGATGGTCATTCTTGGGGTTCTGACTGTCGTAGCACTGCTG	6	+	48922429-48922478	6q16	Rattus norvegicus family with sequence similarity 110, member C (Fam110c), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62656055-S	ILMN_279156	RGD1310352	XM_001073512.1	XM_001073512.1		303122	109490691	XM_001073512.1	RGD1310352	XP_001073512.1	ILMN_1364537	0001090100	S	2269	CTTCAGGGCGTTGGCTGTCCCTGGGAAGGGCACTGTGGTGAAACACATCT				10q22	PREDICTED: Rattus norvegicus similar to HTGN29 protein; keratinocytes associated transmembrane protein 2 (RGD1310352), mRNA.					
Rattus norvegicus	RefSeq	GI_6981679-S	ILMN_285248	TSHR	NM_012888.1	NM_012888.1		25360	6981679	NM_012888.1	Tshr	NP_037020.1	ILMN_1364919	0001430603	S	5037	GATGGTGGAGCAGAAGGCAGAGGGCTTATACCAGAACAAGGACTCGCTGC	6	+	115162299-115162348	6q31	Rattus norvegicus thyroid stimulating hormone receptor (Tshr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with thyroid-stimulating hormone to initiate a change in cell activity [goid 4996] [evidence IMP]; Combining with thyroid-stimulating hormone to initiate a change in cell activity [goid 4996] [evidence ISS]	TSHRA	TSHRA
Rattus norvegicus	RefSeq	GI_47576266-S	ILMN_300344	OLR1301	NM_001000462.1	NM_001000462.1		300602	47576266	NM_001000462.1	Olr1301	NP_001000462.1	ILMN_1352684	0002190059	S	436	GCTATGGTGTATGGTGTTGGCTTACTCAGTGCTACAACTCACACAGTCTT	8	-	42296555-42296604	8q22	Rattus norvegicus olfactory receptor 1301 (Olr1301), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1301	Olr1301
Rattus norvegicus	RefSeq	GI_62654498-S	ILMN_60086	LOC501074	XM_576486.1	XM_576486.1		501074	62654498	XM_576486.1	LOC501074	XP_576486.1	ILMN_1363804	0005220441	S	885	AAAGGACAGCCCCAGGCCAGAATTGGCCAGATCTCCGTGAAGTCGCCGCA					PREDICTED: Rattus norvegicus similar to mitochondrial ribosome recycling factor (predicted) (LOC501074), mRNA.					
Rattus norvegicus	Unigene	Rn.15446	ILMN_161329	RN.15446	Rn.15446		Rn.15446		8084217	AW918441			ILMN_1530528	0006980088	S	602	AGGAGAGGACCCTTTTGTGTTTGGCAGTAACCTGCTTTGGTTCTTTGCCT					EST349745 Rat gene index, normalized rat, norvegicus, Bento Soares Rattus norvegicus cDNA clone RGIES37 5' end, mRNA					
Rattus norvegicus	RefSeq	GI_62653902-S	ILMN_53067	LOC501021	XM_576430.1	XM_576430.1		501021	62653902	XM_576430.1	LOC501021	XP_576430.1	ILMN_1354064	0001980519	S	374	AAAGCCAACTGCCACTTCCTCTGCAGGTTCTGGGGGTTCCAGAGAGACTG					PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 1 (eIF1) (Protein translation factor SUI1 homolog) (LOC501021), mRNA.					
Rattus norvegicus	RefSeq	GI_62653864-S	ILMN_51263	RORA_PREDICTED	XM_217192.4	XM_217192.4		300807	109483592	XM_217192.4	Rora_predicted	XP_217192.4	ILMN_1367047	0000460168	S	2233	CACCGATTATTGCCGGTCAGCAGGATGGCGTGGAAAGGGGCTCCATAAGC	8	+	73818025-73818074	8q24	PREDICTED: Rattus norvegicus RAR-related orphan receptor alpha (predicted) (Rora_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27659721-S	ILMN_274487	PLAA	NM_053866.2	NM_053866.2		116645	27659721	NM_053866.2	Plaa	NP_446318.2	ILMN_1353564	0004280129	S	1969	GCTTTGTTAGTCAGGCAGGACAAAAGCTCATGATGTCCCAGAGGGAGTCA	5	-	114869875-114869924	5q33	Rattus norvegicus phospholipase A2, activating protein (Plaa), mRNA.		The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the activity of the enzyme phospholipase A2 [goid 16005] [evidence ISS]	Plap	Plap
Rattus norvegicus	RefSeq	GI_34933292-S	ILMN_266532	RGD1561106_PREDICTED	XM_228749.2	XM_228749.2		302548	34933292	XM_228749.2	RGD1561106_predicted	XP_228749.2	ILMN_1373441	0000360154	S	317	TGAAAAACCAGCGCGGAGGTCGCGTCTCTCTCCGCACCATCTACAAGCCA	X	-	26151104-26151153	Xq13	PREDICTED: Rattus norvegicus similar to ferritin heavy chain - chicken (predicted) (RGD1561106_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42821117-S	ILMN_263629	IFI27L	NM_203410.1	NM_203410.1		170512	42821117	NM_203410.1	Ifi27l	NP_981955.1	ILMN_1374967	0005220364	S	642	CCAAGGTGGCTGACATGGCAAGAGAGGAGGCAGACATGGGAACAGAGGTG	6	+	127731507-127731556	6q32	Rattus norvegicus interferon, alpha-inducible protein 27-like (Ifi27l), mRNA.				IRG1; isg12(a)	IRG1; isg12(a)
Rattus norvegicus	RefSeq	GI_21717796-S	ILMN_285999	DEFB22	NM_134391.1	NM_134391.1		171412	21717796	NM_134391.1	Defb22	NP_599218.1	ILMN_1374512	0003450433	S	351	GGGCACCTGTAGGAAGACGTGCAGAAAAGGGGAGTACCAGACAGACCCTG	3	-	142813923-142813972	3q41	Rattus norvegicus defensin beta 22 (Defb22), mRNA.				2D6glycoprotein; Defb22	2D6glycoprotein; Defb22
Rattus norvegicus	RefSeq	GI_62660654-S	ILMN_268905	TNIP2	NM_001024771.1	NM_001024771.1		305451	67078475	NM_001024771.1	Tnip2	NP_001019942.1	ILMN_1356689	0006860315	S	1505	CTTCAGTGTCCTCATTGCCTGCGGTGTTTCAGTGATGAGCAAGGCGAGGC	14	+	81887565-81887614	14q21	Rattus norvegicus TNFAIP3 interacting protein 2 (Tnip2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644111-S	ILMN_59700	LOC295333	XM_227532.3	XM_227532.3		295333	62644111	XM_227532.3	LOC295333	XP_227532.3	ILMN_1355187	0003450537	S	2505	CTTGACTTAAAAATCCATGGGGGCTGGGAGCAGAAGAGGAAGCCTCAGCC				2q34	PREDICTED: Rattus norvegicus similar to A930010I20 protein (predicted) (LOC295333), mRNA.					
Rattus norvegicus	RefSeq	GI_62645174-S	ILMN_284080	RGD1564400_PREDICTED	XM_001058193.1	XM_001058193.1		295660	109470025	XM_001058193.1	RGD1564400_predicted	XP_001058193.1	ILMN_1349328	0002060435	S	152	CCTCTTCCTCCCAGTCCCGGGCGAGCCGCGTTGGGTTTATTTGACGAAAA				3q21	PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 5 (eIF-5) (predicted) (RGD1564400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650133-S	ILMN_64891	LOC366512	XM_345610.2	XM_345610.2		366512	62650133	XM_345610.2	LOC366512	XP_345611.2	ILMN_1366469	0001230292	S	4465	GGGATAGCTCCACTCGCTTCTCTAACAAGCACCAGGGGGAAACTCAGGGC					PREDICTED: Rattus norvegicus similar to [Ascaris lumbricoides mRNA sequence.], gene product (LOC366512), mRNA.					
Rattus norvegicus	RefSeq	GI_62650514-S	ILMN_286666	DDEF2_PREDICTED	XM_001074649.1	XM_001074649.1		362719	109479188	XM_001074649.1	Ddef2_predicted	XP_001074649.1	ILMN_1348937	0005900300	S	2893	GGCCACATTGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCGTATCGTT				6q16	PREDICTED: Rattus norvegicus development and differentiation enhancing factor 2 (predicted) (Ddef2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646428-A	ILMN_300960	ZFP64	NM_001012093.1	NM_001012093.1		311661	58865755	NM_001012093.1	Zfp64	NP_001012093.1	ILMN_1376384	0003190273	S	1937	GATTCAGGACGGAACTACGGAAGTGACTGTGGTGAGCGACGGGGACCAGA	3	-	160016034-160016083	3q42	Rattus norvegicus zinc finger protein 64 (Zfp64), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638636-S	ILMN_59512	LOC499039	XM_574324.1	XM_574324.1		499039	62638636	XM_574324.1	LOC499039	XP_574324.1	ILMN_1368695	0007100538	S	454	ACAGACTGCCTGGGTCCCATCAGCTGGGAGTAGCCTCCACATTGCAGTGA					PREDICTED: Rattus norvegicus similar to kinesin family member 25 (LOC499039), mRNA.					
Rattus norvegicus	RefSeq	GI_62647561-S	ILMN_49511	IGKV28	XM_578317.1	XM_578317.1		116471	62647561	XM_578317.1	Igkv28	XP_578317.1	ILMN_1364514	0005900167	S	1418	GAAAACAGGGCAGGTTCCTCGGCTCCTTATCCATACTGCCTCCACCAGGG				4q31	PREDICTED: Rattus norvegicus immunoglobulin kappa chain variable 28 (V28) (Igkv28), mRNA.					
Rattus norvegicus	RefSeq	GI_34862891-S	ILMN_57828	LOC294077	XM_220036.2	XM_220036.2		294077	34862891	XM_220036.2	LOC294077	XP_220036.2	ILMN_1353315	0003190736	S	16	TCTGGAGCCCTGGAGAGCCCGGTGCTAGAGCCCATGCAGAGGCAAACACA				1q53	PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (LOC294077), mRNA.					
Rattus norvegicus	RefSeq	GI_62648592-S	ILMN_290539	IMPAD1	XM_001069864.1	XM_001069864.1		312952	109476092	XM_001069864.1	Impad1	XP_001069864.1	ILMN_1355156	0000540563	S	1004	CCCGGCTGGTGGTGCTGGTTATAAGGTTTTAGCCCTCTTGGATGTACCTG				5q12	PREDICTED: Rattus norvegicus inositol monophosphatase domain containing 1 (Impad1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]		Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640965-S	ILMN_274380	LOC681929	XR_007710.1	XR_007710.1		681929	109462374	XR_007710.1	LOC681929		ILMN_1365651	0006400546	S	1675	GGCTCACTTTCCTTCTTGTCTACCATAGCACCAGTGGCAAGGCCTTAGTC					PREDICTED: Rattus norvegicus similar to putative pheromone receptor Go-VN13C (LOC681929), mRNA.					
Rattus norvegicus	RefSeq	GI_62661472-S	ILMN_66631	ZNF409_PREDICTED	XM_344407.2	XM_344407.2		364384	62661472	XM_344407.2	Znf409_predicted	XP_344408.1	ILMN_1351780	0001580368	S	2724	TGAGGGCCAGCGTGTGTACCAGAGTAACAGCCTTGGGCAGACCTGGAGAA					PREDICTED: Rattus norvegicus zinc finger protein 409 (predicted) (Znf409_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871099-S	ILMN_290579	NTN2L	XM_001057434.1	XM_001057434.1		114524	109490306	XM_001057434.1	Ntn2l	XP_001057434.1	ILMN_1365882	0006520075	S	1913	GAAGTTCTGCCGAAAGGACTATGCGGTGCAAGTGGCAGTGGGTGCGCGCG				10q12	PREDICTED: Rattus norvegicus netrin 2-like (chicken) (Ntn2l), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence NAS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_24638439-S	ILMN_291194	RIMS4	NM_170666.1	NM_170666.1		266976	24638439	NM_170666.1	Rims4	NP_733766.1	ILMN_1350612	0005910707	S	597	TGTGTGGGGAAACTACGGACGAATGGAGCGGAAGCAGTTCATGGGCGTGG	3	-	154783107-154783156	3q42	Rattus norvegicus regulating synaptic membrane exocytosis 4 (Rims4), mRNA.	A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence NAS]		Rim4gamma	Rim4gamma
Rattus norvegicus	RefSeq	GI_62663595-S	ILMN_291263	ZFP184_PREDICTED	XM_001062127.1	XM_001062127.1		306966	109505982	XM_001062127.1	Zfp184_predicted	XP_001062127.1	ILMN_1361908	0006900180	S	2502	GGAGAGAAGAGTTTTGTGTGTGAGGACTGCGGAAAAGCCTTCCAGTATCG				17q11	PREDICTED: Rattus norvegicus zinc finger protein 184 (Kruppel-like) (predicted) (Zfp184_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656523-S	ILMN_54113	RGD1307222_PREDICTED	XM_220693.4	XM_220693.4		303300	109488517	XM_220693.4	RGD1307222_predicted	XP_220693.4	ILMN_1374574	0002100746	S	4387	CCTCTCAGCCAAAAAGACCTGGAAAACCTGAAGGCAGAGGTGGCACGGCG	10	+	61950047-61950054:61951183-61951224	10q24	PREDICTED: Rattus norvegicus similar to mKIAA0664 protein (predicted) (RGD1307222_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647327-S	ILMN_61787	RGD1561131_PREDICTED	XM_575491.2	XM_575491.2		500139	109472090	XM_575491.2	RGD1561131_predicted	XP_575491.2	ILMN_1359118	0004810041	S	2447	GCTCTGGGATGACTCAGCTGGATACTCTTAGTCCCTCTGACCTTGAGACC	4	+	84803707-84803756	4q24	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC223075 (predicted) (RGD1561131_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656366-S	ILMN_62601	RGD1560459_PREDICTED	XM_573131.2	XM_573131.2		497943	109488405	XM_573131.2	RGD1560459_predicted	XP_573131.1	ILMN_1355038	0006770670	S	792	TAGGGACGCCTACAGCACCGCCCTAGCCCCGTACCATCCATGGCTTATCC	10	+	57364931-57364980	10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C730027E14 (predicted) (RGD1560459_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650933-S	ILMN_61795	LOC366682	XM_576064.1	XM_576064.1		366682	62650933	XM_576064.1	LOC366682	XP_576064.1	ILMN_1358764	0003120452	S	876	TGACGGCAGCTGATGGCGCAGATGCAGCAGGAAGATGAGGTGCGGCCCAC				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC366682), mRNA.					
Rattus norvegicus	RefSeq	GI_62640704-S	ILMN_50340	LOC499177	XM_579925.1	XM_579925.1		499177	62640704	XM_579925.1	LOC499177	XP_579925.1	ILMN_1361992	0005570047	S	287	AGGGACCGACATTCTTGGGTTAATGGGGAGGAAAGGGAGAGGAAGTGAGC					PREDICTED: Rattus norvegicus LOC499177 (LOC499177), mRNA.					
Rattus norvegicus	RefSeq	GI_25742860-A	ILMN_273983	GCGR	NM_172091.1	NM_172091.1		24953	25742857	NM_172091.1	Gcgr	NP_742088.1	ILMN_1376835	0000770142	A	1628	CCTGGCCAAGGCTGAAGAGGCAAAGCAGCAAGACAGCAGCTTGTACTATC	10	+	109929370-109929419	10q32.3	Rattus norvegicus glucagon receptor (Gcgr), transcript variant 2, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IDA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IEA]; Combining with gastric inhibitory peptide to initiate a change in cell activity [goid 16519] [evidence IEA]	MGC93090	MGC93090
Rattus norvegicus	RefSeq	GI_25742857	ILMN_273983	GCGR	NM_172091.1	NM_172091.1		24953	25742857	NM_172091.1	Gcgr	NP_742088.1	ILMN_1650247	0002650064	A	1659	GACAGCAGCTTGTACTATCCACACTCCCCTAACCTGTCCTCGCCGGGTAC	10	+	109929401-109929450	10q32.3	Rattus norvegicus glucagon receptor (Gcgr), transcript variant 2, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IDA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IEA]; Combining with gastric inhibitory peptide to initiate a change in cell activity [goid 16519] [evidence IEA]	MGC93090	MGC93090
Rattus norvegicus	RefSeq	GI_62658084-S	ILMN_70308	RGD1563278_PREDICTED	XM_221487.4	XM_221487.4		303963	109493201	XM_221487.4	RGD1563278_predicted	XP_221487.4	ILMN_1373661	0003060010	S	3876	ATTAGACCATGGTTGATGCAACAGGGCACATGCCCCACCTGCAGGCTCCA	11	+	53134003-53134052	11q21	PREDICTED: Rattus norvegicus similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog) (predicted) (RGD1563278_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646519-S	ILMN_290844	RGD1311940_PREDICTED	XM_001059811.1	XM_001059811.1		362287	109471495	XM_001059811.1	RGD1311940_predicted	XP_001059811.1	ILMN_1362602	0000510685	S	1678	TAAGGATGCGTTGTGTGCTGGTAGATGTTCATGGGGCAGTTCCAACCCCC				3q43	PREDICTED: Rattus norvegicus similar to bA305P22.2.1 (novel protein, isoform 1) (predicted) (RGD1311940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652815-S	ILMN_276695	RGD1563996_PREDICTED	XM_001077526.1	XM_001077526.1		315163	109482627	XM_001077526.1	RGD1563996_predicted	XP_001077526.1	ILMN_1362155	0004760068	S	1636	TTTTACAGCAGCGCGGGCAGAGGACCCCGGCATCTAAGCACCAACAGCAA				7q34	PREDICTED: Rattus norvegicus similar to Protein UNQ9166/PRO28631 precursor (predicted) (RGD1563996_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656133-S	ILMN_50033	HIST3H2BA_PREDICTED	XM_220506.2	XM_220506.2		303175	62656133	XM_220506.2	Hist3h2ba_predicted	XP_220506.2	ILMN_1367334	0003780441	S	490	GGGATCCAAGTGGCTTCCCAGGGATAGGGTATCGTGGCCTGAGCCTTTGT				10q22	PREDICTED: Rattus norvegicus histone 3, H2ba (predicted) (Hist3h2ba_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654030-S	ILMN_290399	IRAK1BP1_PREDICTED	XM_001061980.1	XM_001061980.1		300862	109485058	XM_001061980.1	Irak1bp1_predicted	XP_001061980.1	ILMN_1371537	0006100471	S	801	CGCTGCTGTTGAGAATGCATGGCGAAAAGCTCAAGAAGTCTGTGCCCTCG				8q31	PREDICTED: Rattus norvegicus interleukin-1 receptor-associated kinase 1 binding protein 1 (predicted) (Irak1bp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661496-S	ILMN_263856	RGD1565688_PREDICTED	XM_001056714.1	XM_001056714.1		498517	109502421	XM_001056714.1	RGD1565688_predicted	XP_001056714.1	ILMN_1353890	0002260563	S	2051	AACATGGTCATCAGCAGCAGGGGAAGGAAGTGGAGAAGGGCAGTGGTGGC				15p13	PREDICTED: Rattus norvegicus similar to mKIAA0323 protein (predicted) (RGD1565688_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717902	ILMN_54620	LOC316186	XM_236876.3	XM_236876.3		316186	62717902	XM_236876.3	LOC316186	XP_236876.3	ILMN_1650304	0005080142	S	1638	GGTAGGCTTTTTCCTTAATACCCCCACTCCAACAAAACAGACCTACCTTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC316186), mRNA.					
Rattus norvegicus	RefSeq	GI_62658770-S	ILMN_280139	WBSCR16_PREDICTED	XM_001077926.1	XM_001077926.1		360796	109497227	XM_001077926.1	Wbscr16_predicted	XP_001077926.1	ILMN_1358159	0000670053	S	2183	TGTCACCCCAGAGGTTCCCCAGAACACAGTCCAGGAGCCCAGAATGCCTT				12q12	PREDICTED: Rattus norvegicus Williams-Beuren syndrome chromosome region 16 homolog (human) (predicted) (Wbscr16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654413-S	ILMN_55660	LOC301044	XM_238561.3	XM_238561.3		301044	62654413	XM_238561.3	LOC301044	XP_238561.1	ILMN_1350200	0000630487	S	1093	CTAACCTACCTCTACCCCTCTCTGTGCCTGACTGTGGATGTGGCATGGCC					PREDICTED: Rattus norvegicus hypothetical LOC301044 (LOC301044), mRNA.					
Rattus norvegicus	RefSeq	GI_47577726-S	ILMN_282967	OLR1266	NM_001000802.1	NM_001000802.1		405088	47577726	NM_001000802.1	Olr1266	NP_001000802.1	ILMN_1371118	0006450315	S	804	GGACAAGGGAAAAGTGGCCTCGGTATTTTACACCAATGTTGCTCCCATGC	8	+	41094291-41094340	8q22	Rattus norvegicus olfactory receptor 1266 (Olr1266), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1266	Olr1266
Rattus norvegicus	RefSeq	GI_62666359-S	ILMN_47962	LOC502484	XM_577965.1	XM_577965.1		502484	62666359	XM_577965.1	LOC502484	XP_577965.1	ILMN_1365153	0006110152	S	368	GGATGTAAACAGGCGGTCTCTCTGCCTGGCGTGGGCTTTCCGCTTCCAGA					PREDICTED: Rattus norvegicus similar to Glutamate receptor, ionotropic kainate 2 precursor (Glutamate receptor 6) (GluR-6) (GluR6) (LOC502484), mRNA.					
Rattus norvegicus	RefSeq	GI_62653027-S	ILMN_53309	WNT10B_PREDICTED	XM_235636.3	XM_235636.3		315294	109481277	XM_235636.3	Wnt10b_predicted	XP_235636.1	ILMN_1357187	0000130576	S	1909	CTCAAAACTCCTCCACTACAGCCCAGAACCTCCTCTTATGGGGCCTCGGG	7	-	137541472-137541521	7q36	PREDICTED: Rattus norvegicus wingless related MMTV integration site 10b (predicted) (Wnt10b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661086-S	ILMN_293806	LOC305698	XM_223806.3	XM_223806.3		305698	62661086	XM_223806.3	LOC305698	XP_223806.3	ILMN_1368268	0000070441	S	878	CCACACAATGGGGAGCTGATGACCCGGCTGAAGCAGATTTGAGCTCTGCG	15	+	5780585-5780634	15p16	PREDICTED: Rattus norvegicus similar to Glutaredoxin-1 (Thioltransferase-1) (TTase-1) (LOC305698), mRNA.		Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661934-S	ILMN_69450	LOC502001	XM_577428.1	XM_577428.1		502001	62661934	XM_577428.1	LOC502001	XP_577428.1	ILMN_1349907	0000510592	S	805	TGCAGCAGTCACCACAGGAGAGGATCAGCCCTTTCTGGATCAAACACAAC				15p13	PREDICTED: Rattus norvegicus similar to mast cell protease 1 (LOC502001), mRNA.					
Rattus norvegicus	RefSeq	GI_62646374-S	ILMN_277932	CD40	NM_134360.1	NM_134360.1		171369	68534950	NM_134360.1	Cd40	NP_599187.1	ILMN_1355111	0002230400	S	949	AGCCGCTGACTTTTGAAGTTTGAGAGGAGCCAAGGCAGAGCCCGGTGCAG	3	+	156107134-156107183	3q42	Rattus norvegicus CD40 molecule, TNF receptor superfamily member 5 (Cd40), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence IDA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell capable of activating, perpetuating, or inhibiting an immune response [goid 2768] [evidence IDA]; A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell capable of activating, perpetuating, or inhibiting an immune response [goid 2768] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IGI]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IDA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence IDA]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51023] [evidence IDA]; Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51023] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	Cd40	Cd40
Rattus norvegicus	RefSeq	GI_62666394-S	ILMN_50398	LOC363377	XM_343712.2	XM_343712.2		363377	62666394	XM_343712.2	LOC363377	XP_343713.2	ILMN_1356747	0007040403	S	582	TAGATCGCTTGCCTAGAAAGCACAAGGCCCTGGGTTCTGTCCCCAGCTCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05 (LOC363377), mRNA.					
Rattus norvegicus	RefSeq	GI_13592072-S	ILMN_279120	RPS21	NM_031111.1	NM_031111.1		81775	13592072	NM_031111.1	Rps21	NP_112373.1	ILMN_1358719	0004560270	S	1	TTTCTGTGTTCTCCGTAGACCCGTGAGCAGGGACGGCCTCGGTATGCAGA	3	+	169311205-169311234:169311390-169311402:169311403-169311409	3q43	Rattus norvegicus ribosomal protein S21 (Rps21), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any part of a ribosome [goid 43022] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_39930464-S	ILMN_285546	SYT10	NM_031666.1	NM_031666.1		60567	39930464	NM_031666.1	Syt10	NP_113854.1	ILMN_1360193	0000730129	S	1447	GAAATGCTGGCCTATCACCGAAAGCCAATCACACACTGGCACCCCTTGCT	7	-	128118264-128118313	7q34	Rattus norvegicus synaptotagmin X (Syt10), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658998-S	ILMN_275093	RGD1309698_PREDICTED	XM_341095.2	XM_341095.2		360821	62658998	XM_341095.2	RGD1309698_predicted	XP_341096.2	ILMN_1368342	0004150091	S	1564	GCAGAGGCTGATGCTGTCTTTCTGGTCTCTGAGGCACTAACACACATGCG	12	+	42545778-42545827	12q16	PREDICTED: Rattus norvegicus similar to Putative protein 15E1.2 (predicted) (RGD1309698_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465618-S	ILMN_272778	CYP3A1	NM_173144.1	NM_173144.1		286929	27465618	NM_173144.1	Cyp3a1	NP_775167.1	ILMN_1369391	0005900368	S	1798	GGAACTTAACCTTTGGTGATTCTCACGGGACTACCTCCATCCACATCTGG	12	-	9566949-9566998	12p11	Rattus norvegicus cytochrome P450, family 3, subfamily a, polypeptide 1 (Cyp3a1), mRNA.					
Rattus norvegicus	RefSeq	GI_6978620-S	ILMN_269799	CCNG1	NM_012923.1	NM_012923.1		25405	6978620	NM_012923.1	Ccng1	NP_037055.1	ILMN_1363670	0002630731	S	2857	GGCCTTGAATGTTTGATCTTCACTGCTGAAATGTGGGTAGCTCCTCAGCG	10	-	25776643-25776692	10q12	Rattus norvegicus cyclin G1 (Ccng1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]		MGC93642; Ccng; CYCG	MGC93642; Ccng; CYCG
Rattus norvegicus	RefSeq	GI_62659387-S	ILMN_278048	LOC498236	XM_001063884.1	XM_001063884.1		498236	109498693	XM_001063884.1	LOC498236	XP_001063884.1	ILMN_1368857	0001980707	S	2824	TCAGCAGGCTAACCCTTGAGTCCTGTACTAGAAATGGTGTGTCCCTGCGG				13q13	PREDICTED: Rattus norvegicus LRRGT00186 (LOC498236), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758789-S	ILMN_274305	PSCD1	NM_053910.1	NM_053910.1		116691	16758789	NM_053910.1	Pscd1	NP_446362.1	ILMN_1375113	0005080092	S	1230	TGCAGCACGGAAAAAGAAGGTCTCCTCCACAAAGAGGCACTGAGGGTGCA				10q32.3	Rattus norvegicus pleckstrin homology, Sec7 and coiled-coil domains 1 (Pscd1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Sec7	Sec7
Rattus norvegicus	RefSeq	GI_62652258-S	ILMN_60350	RGD1564851_PREDICTED	XM_345830.3	XM_345830.3		366909	109480652	XM_345830.3	RGD1564851_predicted	XP_345831.3	ILMN_1348989	0002340647	S	1517	AGTTCCACCGCGTCTTGGAGTGGCATCTGGGGCTTGGAGAAAGAACCAAG	7	-	67129015-67129064	7q22	PREDICTED: Rattus norvegicus similar to putative anion transporter (predicted) (RGD1564851_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11693161-S	ILMN_264729	LOC683385	XM_001066529.1	XM_001066529.1		683385	109473287	XM_001066529.1	LOC683385	XP_001066529.1	ILMN_1362353	0005290010	S	1651	GATTGCCTTGTAAAAGGTTGAGTGTGCACGTCACTGCGTTCGGTGCGCAG					PREDICTED: Rattus norvegicus similar to Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced growth response protein CL-6) (Immediate-early protein CL-6) (LOC683385), mRNA.					
Rattus norvegicus	RefSeq	GI_62646262-S	ILMN_53122	LOC499938	XM_575282.1	XM_575282.1		499938	62646262	XM_575282.1	LOC499938	XP_575282.1	ILMN_1359315	0004210180	S	3567	CCTGAGGAGGTGCTAGGTGTGAGGACTGACGGGAAACTTCAGGAGACATT					PREDICTED: Rattus norvegicus similar to LRRGT00065 (LOC499938), mRNA.					
Rattus norvegicus	RefSeq	GI_62651256-S	ILMN_54631	WDR20_PREDICTED	XM_234540.3	XM_234540.3		314453	62651256	XM_234540.3	Wdr20_predicted	XP_234540.3	ILMN_1369893	0002260181	S	1858	CTGCCAGCCAAGTCAGTCACCCCTCTGGGTATATAGAGTCCAAGTTAGCA				6q32	PREDICTED: Rattus norvegicus WD repeat domain 20 (predicted) (Wdr20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647410-S	ILMN_65590	LOC500173	XM_575525.1	XM_575525.1		500173	62647410	XM_575525.1	LOC500173	XP_575525.1	ILMN_1367070	0005050161	S	300	AGCAGCCTTGAGCCTGAAGATTTTGCAATGTATTACTGCCAACAGGATGC					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain precursor (LOC500173), mRNA.					
Rattus norvegicus	RefSeq	GI_47577118-S	ILMN_298438	OLR325	NM_001000247.1	NM_001000247.1		293763	47577118	NM_001000247.1	Olr325	NP_001000247.1	ILMN_1365815	0001770601	S	896	AGAGACTGCAGAGGAGGCTGGGGCCTTCTGAGAGCAATAAGCTTGGGTGA				1q43	Rattus norvegicus olfactory receptor 325 (Olr325), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr325	Olr325
Rattus norvegicus	RefSeq	GI_12083664-S	ILMN_290548	TAOK2	NM_022702.1	NM_022702.1		64666	12083664	NM_022702.1	Taok2	NP_073193.1	ILMN_1360309	0005670551	S	4019	TTCCCCAGGTCCAATCCCAGCCCCAGATGTAGATTTCTAGACAGGCAGCC	1	-	186049231-186049280	1q36	Rattus norvegicus TAO kinase 2 (Taok2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Tao2	Tao2
Rattus norvegicus	RefSeq	GI_8393304-S	ILMN_262604	EGR3	NM_017086.1	NM_017086.1		25148	8393304	NM_017086.1	Egr3	NP_058782.1	ILMN_1352189	0004560129	S	753	TACTCTCAAGCCCATCCGGCCCCGCAAGTACCCCAATCGGCCTAGCAAGA	15	+	50479498-50479547	15p11	Rattus norvegicus early growth response 3 (Egr3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647195-S	ILMN_277815	ZFP212	XM_001053455.1	XM_001053455.1		297066	109473441	XM_001053455.1	Zfp212	XP_001053455.1	ILMN_1374700	0004850070	S	1435	TGCCATCAGCAGGAAGGCCCCAGCACCAGCCCACAAATCCAGGAGAGATT				4q24	PREDICTED: Rattus norvegicus Zinc finger protein 212 (Zfp212), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663502-S	ILMN_264348	SOX4_PREDICTED	XM_001068302.1	XM_001068302.1		364712	109505727	XM_001068302.1	Sox4_predicted	XP_001068302.1	ILMN_1350349	0004230301	S	1030	AGCCTCGGAAATGGACATGGGGACCTCGTGGAAGCCACAGCAGCCTAGTT				17p12	PREDICTED: Rattus norvegicus SRY-box containing gene 4 (predicted) (Sox4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653722-S	ILMN_265701	IMP3_PREDICTED	XM_001074037.1	XM_001074037.1		315697	109484770	XM_001074037.1	Imp3_predicted	XP_001074037.1	ILMN_1359524	0000540037	S	616	CAGCTACAGGTCACTGAACCGGGGATGGGGAGAATCGCCTCTGTGTTCCG				8q24	PREDICTED: Rattus norvegicus IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) (predicted) (Imp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576916-S	ILMN_269262	OLR803	NM_001000853.1	NM_001000853.1		405143	47576916	NM_001000853.1	Olr803	NP_001000853.1	ILMN_1366141	0003990494	S	729	CCTGACTGTGGTCTCCATGTCTTATGGGATGGCCCTCTTCACCTACATGC	4	-	70272555-70272604	4q23	Rattus norvegicus olfactory receptor 803 (Olr803), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr803	Olr803
Rattus norvegicus	RefSeq	GI_12083656-S	ILMN_288344	BAD	NM_022698.1	NM_022698.1		64639	12083656	NM_022698.1	Bad	NP_073189.1	ILMN_1369751	0002690288	S	813	AGTTTTCCACACACCCTACCCCCTACGCCTCCGGAAGTGGCTATGTTCCC	1	+	209626104-209626153	1q43	Rattus norvegicus Bcl2-antagonist of cell death (Bad), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose [goid 6007] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose [goid 6007] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IEA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a oleate stimulus [goid 34201] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose [goid 6007] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the enzyme protein phosphatase 2B [goid 30346] [evidence IPI]; Interacting selectively with protein kinase B, an intracellular kinase that is important in regulating glucose metabolism [goid 43422] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666507	ILMN_56985	LOC501512	XM_576913.1	XM_576913.1		501512	62666507	XM_576913.1	LOC501512	XP_576913.1	ILMN_1650444	0000770040	S	1670	CCCATGTGTTGGTAGCCTGGTGGAGATAAAAGGCCAGGTGAAGGCAGGGC				Xq12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930578C19 (LOC501512), mRNA.					
Rattus norvegicus	RefSeq	GI_12408321-S	ILMN_299740	IREB2	NM_022863.1	NM_022863.1		64831	12408321	NM_022863.1	Ireb2	NP_074054.1	ILMN_1353688	0000060131	S	3452	CATCTGCAAGGCATAGAACCTGCCCCAGATCACAGTCCCTCTGACCAGCC	8	+	58477560-58477609	8q24	Rattus norvegicus iron responsive element binding protein 2 (Ireb2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX [goid 6782] [evidence ISS]; The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX [goid 6782] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process of regulating the production and elimination of erythrocytes within an organism [goid 34101] [evidence ISS]; Any process of regulating the production and elimination of erythrocytes within an organism [goid 34101] [evidence IEA]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence ISS]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]	MGC93423; Irp2	MGC93423; Irp2
Rattus norvegicus	RefSeq	GI_62078814-S	ILMN_275838	MYBPHL	NM_001014042.1	NM_001014042.1		310782	62078814	NM_001014042.1	Mybphl	NP_001014064.1	ILMN_1373006	0001170372	S	1101	GATGGAGGCATCTACACCTGCAAGGCCATCAACGCTCTGGGGGAGGCATC	2	+	203945449-203945498	2q34	Rattus norvegicus myosin binding protein H-like (Mybphl), mRNA.					
Rattus norvegicus	RefSeq	GI_62662272-S	ILMN_263530	RGD1565661_PREDICTED	XR_008282.1	XR_008282.1		361116	109503863	XR_008282.1	RGD1565661_predicted		ILMN_1354494	0005130301	S	1229	GGTTCATACACTCACCAGTGCTCAGTTTGTGGCTTAGCCTGCTGAGGAGG				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110001I22 (predicted) (RGD1565661_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27229287-S	ILMN_267621	HAS3	NM_172319.1	NM_172319.1		266805	27229287	NM_172319.1	Has3	NP_758822.1	ILMN_1373116	0006510427	S	2316	GGCTGGAAAGCCTGACCTTTGGTCAAAAAACAGGGTCTAAGAAGTGGTGC	19	+	36727437-36727486	19q12	Rattus norvegicus hyaluronan synthase 3 (Has3), mRNA.					
Rattus norvegicus	RefSeq	GI_18266701-S	ILMN_270490	BNIP1	NM_080897.1	NM_080897.1		140932	18266701	NM_080897.1	Bnip1	NP_543173.1	ILMN_1352175	0006420129	S	977	TCGCCATGTCCAGAGGCATGAATGGTGAATGCTGGGTGTGGTGGAGGGAG	10	-	16648698-16648747	10q12	Rattus norvegicus BCL2/adenovirus E1B 19kDa-interacting protein 1 (Bnip1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence ISS]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the endoplasmic reticulum [goid 7029] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the endoplasmic reticulum [goid 7029] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The joining of 2 or more lipid bilayer membranes that surround the endoplasmic reticulum [goid 16320] [evidence ISS]; The joining of 2 or more lipid bilayer membranes that surround the endoplasmic reticulum [goid 16320] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_31340605-S	ILMN_296730	CNKSR2	NM_021686.2	NM_021686.2		59322	31340605	NM_021686.2	Cnksr2	NP_067718.1	ILMN_1348904	0002900746	S	4099	GGGCCCCCGTGGCTCAATATTGCTTCTTTTTTCTTCTGTGGTAGATGTGA	X	+	58430589-58430638	Xq21	Rattus norvegicus connector enhancer of kinase suppressor of Ras 2 (Cnksr2), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660219-S	ILMN_54932	LOC498338	XM_573567.1	XM_573567.1		498338	62660219	XM_573567.1	LOC498338	XP_573567.1	ILMN_2038890	0001740187	S	202	CCTGCTCCTGAAATGAAGCAGGCCCAGAGCCAGACTGACAAAGCAATAGC					PREDICTED: Rattus norvegicus similar to LRRGT00068 (LOC498338), mRNA.					
Rattus norvegicus	RefSeq	GI_13242244-S	ILMN_294128	GCH1	NM_024356.1	NM_024356.1		29244	13242244	NM_024356.1	Gch1	NP_077332.1	ILMN_1372022	0006980288	S	830	TTCCTCACACTCATCAGGAGCTGAACTTCCGTGTGCGAGCCCCGGTTTGC	15	-	23024082-23024131	15p14	Rattus norvegicus GTP cyclohydrolase 1 (Gch1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate [goid 6184] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence TAS]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the lungs. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 14916] [evidence ISS]; The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring [goid 19438] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon-gamma is also known as type II interferon [goid 34341] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus [goid 34612] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]; Any process that activates or increases the activity of the enzyme nitric-oxide synthase [goid 51000] [evidence ISS]; The chemical reactions and pathways involving dihydrobiopterin, a reduced pteridine derivative related to folic acid; it acts as an electron carrier in tyrosine biosynthesis and its quinoid form is produced by oxidation of tetrahydrobiopterin in several biological hydroxylation reactions [goid 51066] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Catalysis of the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate [goid 3934] [evidence IDA]; Catalysis of the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate [goid 3934] [evidence IEA]; Catalysis of the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate [goid 3934] [evidence ISS]; Catalysis of the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate [goid 3934] [evidence IDA]; Catalysis of the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate [goid 3934] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653862-S	ILMN_51166	LOC501017	XM_580151.1	XM_580151.1		501017	62653862	XM_580151.1	LOC501017	XP_580151.1	ILMN_1356579	0005420541	S	534	AAGCCGGAAAGAACTGAGAATGGAGCTGGCGTTGCAGACCAGCGGAGGTC					PREDICTED: Rattus norvegicus LOC501017 (LOC501017), mRNA.					
Rattus norvegicus	RefSeq	GI_6978770-S	ILMN_268266	DNM2	NM_013199.1	NM_013199.1		25751	6978770	NM_013199.1	Dnm2	NP_037331.1	ILMN_1350280	0005390440	S	3317	TTGGCTTCCAACCAGATGTCTCCTACAGGGTGGGCCCTGGTGCCTCTGTA	8	+	20610600-20610649	8q13	Rattus norvegicus dynamin 2 (Dnm2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A clathrin-coated, membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 45334] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence TAS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IDA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	DYIIAAB	DYIIAAB
Rattus norvegicus	RefSeq	GI_62644581-S	ILMN_286480	LOC295528	XM_001080231.1	XM_001080231.1		295528	109467792	XM_001080231.1	LOC295528	XP_001080231.1	ILMN_1370486	0003440670	S	4432	CGCCAAGAGCAGAGAAGGTAGCAGTGGTGGAGGAAGTGACATCAGCAGGG				2q45	PREDICTED: Rattus norvegicus similar to T06D8.1a (LOC295528), mRNA.					
Rattus norvegicus	RefSeq	GI_62662451	ILMN_52566	LOC361128	XM_341415.2	XM_341415.2		361128	62662451	XM_341415.2	LOC361128	XP_341416.2	ILMN_1650535	0006350278	S	564	TGAGGATACCACCGACTTTTTTGGCCGTGTAGTCATCTACCACCTGCGGG					PREDICTED: Rattus norvegicus similar to TR4 orphan receptor associated protein TRA16 (LOC361128), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646188-S	ILMN_49592	LOC311527	XM_230710.3	XM_230710.3		311527	62646188	XM_230710.3	LOC311527	XP_230710.3	ILMN_1372327	0006020373	S	1524	CTGGGCTGCAGTCCCGGAATAGCTATGGCCCAGTACAGTGCTTTTCATAG					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (LOC311527), mRNA.					
Rattus norvegicus	RefSeq	GI_62666538-S	ILMN_297099	RGD1560170_PREDICTED	XM_001056908.1	XM_001056908.1		317343	109511492	XM_001056908.1	RGD1560170_predicted	XP_001056908.1	ILMN_1358772	0006860292	S	4638	CCCCCTGGTGGGCGTCCATAGACACTATTGTTTTTAAACCAGGAAGGCTG				Xq13	PREDICTED: Rattus norvegicus similar to cofactor required for Sp1 transcriptional activation, subunit 2, 150kDa (predicted) (RGD1560170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667124-S	ILMN_278225	BRWD3_PREDICTED	XM_001054667.1	XM_001054667.1		317213	109512169	XM_001054667.1	Brwd3_predicted	XP_001054667.1	ILMN_1353911	0005290039	S	5231	GGAAGAGGCAGATGGGGAAGATGGGGTAGATGGAGTAGAGGAGGCAGAGG				Xq31	PREDICTED: Rattus norvegicus bromodomain and WD repeat domain containing 3 (predicted) (Brwd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173803-S	ILMN_67110	KCNG3	NM_133426.2	NM_133426.2		171011	76881801	NM_133426.2	Kcng3	NP_596917.2	ILMN_1368385	0002970129	S	1089	GTCCAACAAGGACTTTGCCAGCATCCCCGCTGCCTGCTGGTGGGTGATTA	6	-	6947973-6948022	6q12	Rattus norvegicus potassium voltage-gated channel, subfamily G, member 3 (Kcng3), transcript variant 1, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [pmid 15046870] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [pmid 15046870] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv10.1; Kv6.3	Kv10.1; Kv6.3
Rattus norvegicus	RefSeq	GI_62647109-S	ILMN_50892	LOC500093	XM_575444.1	XM_575444.1		500093	62647109	XM_575444.1	LOC500093	XP_575444.1	ILMN_1360251	0007100411	S	430	CACAGCCCTGAAGCCTGAAGATGTGGCTACATAGTTCTGTGCCAGTAGCC				4q22	PREDICTED: Rattus norvegicus similar to T cell receptor variable region:SUBUNIT=beta:ISOTYPE=4 (LOC500093), mRNA.					
Rattus norvegicus	RefSeq	Rn.9148	ILMN_285352	LOC684536	XM_001071921.1	XM_001071921.1		684536	109466897	XM_001071921.1	LOC684536	XP_001071921.1	ILMN_1530502	0002100440	S	2298	ACTGATGTTCTTGTTCCCAGGACTGATTTTTCTATTCATGCATTCCAAAT					PREDICTED: Rattus norvegicus similar to Glucosylceramidase precursor (Beta-glucocerebrosidase) (Acid beta-glucosidase) (D-glucosyl-N-acylsphingosine glucohydrolase), transcript variant 1 (LOC684536), mRNA.					
Rattus norvegicus	RefSeq	GI_62078902-S	ILMN_285104	MAF1	NM_001014085.1	NM_001014085.1		315093	62078902	NM_001014085.1	Maf1	NP_001014107.1	ILMN_1363754	0002450390	S	1338	CAGCACGGGGTCTGATAGAAAAAGTGACTGCTCTGCACCAACGGTCTGTC	7	+	114405044-114405093	7q34	Rattus norvegicus MAF1 homolog (S. cerevisiae) (Maf1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase III promoter [goid 16480] [evidence IEA]	Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654369-S	ILMN_53661	RGD1560940_PREDICTED	XM_576476.2	XM_576476.2		501060	109483995	XM_576476.2	RGD1560940_predicted	XP_576476.2	ILMN_1373703	0006040142	S	534	CTCCCTCATCAGCAAATGGTGGGTGATGACCGCAGCCCACTGTGTCTACG	8	+	115196996-115197045	8q32	PREDICTED: Rattus norvegicus similar to testis specific serine proteinase 3 (predicted) (RGD1560940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665008-S	ILMN_283198	GCDH_PREDICTED	XM_001066810.1	XM_001066810.1		364975	109508551	XM_001066810.1	Gcdh_predicted	XP_001066810.1	ILMN_1367859	0005900048	S	1787	GGAACTGGAAGAGACAAAGGGGAGTGACACAGAAGCCACTGAGACGGAGC				19q11	PREDICTED: Rattus norvegicus glutaryl-Coenzyme A dehydrogenase (predicted) (Gcdh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222335-S	ILMN_273866	FBXL16	NM_001009504.1	NM_001009504.1		494223	57222335	NM_001009504.1	Fbxl16	NP_001009504.1	ILMN_1357301	0002350079	S	1067	GCCCTCGGATCACAGATATGGCACTGGAGTATGTGGCCTGCGACTTGCAC	10	+	15083927-15083976	10q12	Rattus norvegicus F-box and leucine-rich repeat protein 16 (Fbxl16), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Scirr1	Scirr1
Rattus norvegicus	RefSeq	GI_62661270-S	ILMN_48977	KTN1_PREDICTED	XM_341305.3	XM_341305.3		361029	109501540	XM_341305.3	Ktn1_predicted	XP_341306.3	ILMN_1354299	0003060671	S	2300	GAAGCTGCAGGCCGTGGTCTCTGAGCAGCCTAATAAAGATGTGGTGGAAC	15	+	23675111-23675138:23681108-23681129	15p14	PREDICTED: Rattus norvegicus kinectin 1 (predicted) (Ktn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661272-S	ILMN_48977	KTN1_PREDICTED	XM_341305.3	XM_341305.3		361029	109501540	XM_341305.3	Ktn1_predicted	XP_341306.3	ILMN_1366075	0002850050	S	4166	CAGCAGCTCACAAAGGAGAAGTGATCCAGTGTGGGAGTGAAGTAATCGGG	15	+	23719863-23719886:23719887-23719897:23721833-23721847	15p14	PREDICTED: Rattus norvegicus kinectin 1 (predicted) (Ktn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11067418-S	ILMN_295970	RAPGEF3	NM_021690.1	NM_021690.1		59326	11067418	NM_021690.1	Rapgef3	NP_067722.1	ILMN_1357364	0003870463	S	3284	TTGCCTGGGAGAGGGTGGGGAGTTCTGCTATTCTCACCACACATCTGAGA	7	-	136452966-136453015	7q36	Rattus norvegicus Rap guanine nucleotide exchange factor (GEF) 3 (Rapgef3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]	MGC124613; Epac	MGC124613; Epac
Rattus norvegicus	RefSeq	GI_8393803-S	ILMN_269445	MYH6	NM_017239.1	NM_017239.1		29556	8393803	NM_017239.1	Myh6	NP_058935.1	ILMN_1349554	0004540162	S	5839	GCACGATGAGGAATAACCTGTCCAGCAGAAAGAGCCTCGCTGTTGCTATC	15	-	33044542-33044573:33044574-33044591	15p13	Rattus norvegicus myosin, heavy polypeptide 6, cardiac muscle, alpha (Myh6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filament of myosin found in a muscle cell of any type [goid 5859] [evidence IDA]; Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IMP]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IMP]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence IEA]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IMP]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IMP]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the visceral muscle over time, from its formation to the mature structure [goid 7522] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated [goid 30049] [evidence IEA]; The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated [goid 30049] [evidence ISS]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; Any process that modulates the rate of ATP hydrolysis by an ATPase [goid 43462] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle fiber over time, from its formation to the mature structure [goid 48739] [evidence ISS]; The process by which the anatomical structure of cardiac atrium muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55009] [evidence IEA]; The process by which the anatomical structure of cardiac atrium muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55009] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence IMP]; Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of calcium ion (Ca2+) [goid 30899] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	Myhca	Myhca
Rattus norvegicus	RefSeq	GI_62642777-S	ILMN_291160	ZBED3	NM_001025729.1	NM_001025729.1		361881	71043883	NM_001025729.1	Zbed3	NP_001020900.1	ILMN_1352946	0000050546	S	703	CCGCCTCTGCTCCCCAAGGAGGACCCTGACATCCATGATGACGACAATGA	2	+	25702556-25702605	2q12	Rattus norvegicus zinc finger, BED domain containing 3 (Zbed3), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC116104	MGC116104
Rattus norvegicus	RefSeq	GI_62665957-S	ILMN_269784	ADAMTS14_PREDICTED	XM_001055182.1	XM_001055182.1		309837	109510088	XM_001055182.1	Adamts14_predicted	XP_001055182.1	ILMN_1370435	0006980494	S	3506	CCATCCCTGGCTACCTCCGGCTGTGTTGTGAGTCTTGCATAAAGAAGGCC				20q11	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14 (predicted) (Adamts14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577452-S	ILMN_280894	OLR68	NM_001000133.1	NM_001000133.1		293214	47577452	NM_001000133.1	Olr68	NP_001000133.1	ILMN_1362470	0004060347	S	856	GCAGATATGTTCTTGTTGGTGCCACCCCTCATGAACCCCATTGTGTACTG	1	+	160766627-160766676	1q32	Rattus norvegicus olfactory receptor 68 (Olr68), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-160844789-160845757_ORF; Olr68	ratchr1-160844789-160845757_ORF; Olr68
Rattus norvegicus	RefSeq	GI_62078668-S	ILMN_273837	SLFN8	NM_001013970.1	NM_001013970.1		303378	62078668	NM_001013970.1	Slfn8	NP_001013992.1	ILMN_1354284	0002100193	S	3221	GCCTAGCTTCCATTGTGCAAATCCTGACCCCATTGTTTGGATTCTGCCCC	10	-	71192284-71192333	10q26	Rattus norvegicus schlafen 8 (Slfn8), mRNA.					
Rattus norvegicus	RefSeq	GI_41281608-I	ILMN_268083	PCDHA12	NM_053940.1	NM_053940.1		116779	41281608	NM_053940.1	Pcdha12	NP_446392.1	ILMN_1375791	0001340497	I	1057	TCGCTGTCCCTCCCAGTAAGAGAAGATGCGCAGCCAAATACAGTGATTGC	18	+	29735569-29735618	18p11	Rattus norvegicus protocadherin alpha 12 (Pcdha12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Pcdha11; rCNRv12; Pcdha12	Pcdha11; rCNRv12; Pcdha12
Rattus norvegicus	RefSeq	GI_62645936-S	ILMN_60066	LOC499897	XM_575243.1	XM_575243.1		499897	62645936	XM_575243.1	LOC499897	XP_575243.1	ILMN_1368201	0005050427	S	181	CCCATGGCAAGTTCAATGGCACAGCCAAGTATGTCGTGGAGTCTACTGGC				3q41	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC499897), mRNA.					
Rattus norvegicus	RefSeq	GI_52138625-S	ILMN_272496	ADPRH	NM_183325.2	NM_183325.2		25371	52138625	NM_183325.2	Adprh	NP_899154.2	ILMN_1358621	0004920403	S	1159	CCGACAGCGGCTAGAAGAGGCCGGAAGAGCTTTGTATTCTCTGGGGTCAA	11	+	64085153-64085202	11q21	Rattus norvegicus ADP-ribosylarginine hydrolase (Adprh), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IMP]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence ISS]; The process of removing one or more ADP-ribose residues from a protein [goid 51725] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: N2-(ADP-D-ribosyl)-L-arginine + H2O = L-arginine + ADP-ribose [goid 3875] [evidence IDA]; Catalysis of the reaction: N2-(ADP-D-ribosyl)-L-arginine + H2O = L-arginine + ADP-ribose [goid 3875] [evidence ISS]; Catalysis of the reaction: N2-(ADP-D-ribosyl)-L-arginine + H2O = L-arginine + ADP-ribose [goid 3875] [evidence IMP]; Catalysis of the reaction: N2-(ADP-D-ribosyl)-L-arginine + H2O = L-arginine + ADP-ribose [goid 3875] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC95225; ADPRHA	MGC95225; ADPRHA
Rattus norvegicus	RefSeq	GI_62646077-S	ILMN_67232	LOC311550	XM_230743.3	XM_230743.3		311550	62646077	XM_230743.3	LOC311550	XP_230743.3	ILMN_1356627	0003710403	S	823	AGGTAGCTGGGAGCGACGCCATTACGGCCCCAGCCCTCTGGATCATTACA				3q41	PREDICTED: Rattus norvegicus similar to Protein C20orf160 (predicted) (LOC311550), mRNA.					
Rattus norvegicus	RefSeq	GI_62650463-S	ILMN_280571	RGD1311331_PREDICTED	XM_001071788.1	XM_001071788.1		313950	109479118	XM_001071788.1	RGD1311331_predicted	XP_001071788.1	ILMN_1359675	0005690427	S	1380	TGGGGCTGGGCCACAGAAGCAGCAACAGATCCAGGCTATGGATGAAATGG				6q14	PREDICTED: Rattus norvegicus similar to HS1 binding protein 3 (predicted) (RGD1311331_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27716916-S	ILMN_280571	RGD1311331_PREDICTED	XM_001071788.1	XM_001071788.1		313950	109479118	XM_001071788.1	RGD1311331_predicted	XP_001071788.1	ILMN_2040565	0001190768	S	1174	CATGAGAGTAGAGGGCCCACATCCAGCCCAGAACACAGGGATGCCTCCAA				6q14	PREDICTED: Rattus norvegicus similar to HS1 binding protein 3 (predicted) (RGD1311331_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654411-S	ILMN_55555	LOC501064	XM_576479.1	XM_576479.1		501064	62654411	XM_576479.1	LOC501064	XP_576479.1	ILMN_1356837	0000430170	S	580	CCTTTTAATCTCCAAAGGAGCAAACTCACTTCCGCCCGAGTGCTGGGAGG					PREDICTED: Rattus norvegicus similar to YPLR6490 (LOC501064), mRNA.					
Rattus norvegicus	RefSeq	GI_62653907	ILMN_53311	RGD1310552_PREDICTED	XM_217194.4	XM_217194.4		300836	109483634	XM_217194.4	RGD1310552_predicted	XP_217194.4	ILMN_1650543	0004210458	S	3624	CTGAGACCCATGACTCCTAAGTGGACTGGAAGCACCCCTGTCTTCACCCT	8	+	79816939-79816988	8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC38960 (predicted) (RGD1310552_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666129-S	ILMN_264516	LOC681252	XM_001060954.1	XM_001060954.1		681252	109509583	XM_001060954.1	LOC681252	XP_001060954.1	ILMN_1357013	0006200528	S	1355	GGCCTCGTCGCCTTCCAAAGCAAATGGGCAGGAGAATGGCCACGTAAAAG	20	-	41308070-41308089:41309608-41309637	20q12	PREDICTED: Rattus norvegicus similar to Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein kinase C substrate 80 kDa protein) (LOC681252), mRNA.					
Rattus norvegicus	RefSeq	GI_62641545-S	ILMN_293081	RGD1562437_PREDICTED	XM_001055599.1	XM_001055599.1		361669	109463068	XM_001055599.1	RGD1562437_predicted	XP_001055599.1	ILMN_1360949	0004780746	S	1123	AGTGTGAAAACCAAGAGGAACAGGACTGAAAGCTGTGAGAGCCCTGGACC				1q41	PREDICTED: Rattus norvegicus similar to transcription elongation regulator 1-like (predicted) (RGD1562437_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27691595	ILMN_262550	DPPA1_PREDICTED	XM_221795.1	XM_221795.1		288393	27691595	XM_221795.1	Dppa1_predicted	XP_221795.1	ILMN_1651171	0002480086	S	89	GGAATAATCACACCGAAGTGGTCCCAACACAATCGCCCCTGAAGATCTCC	12	+	1335011-1335060	12p12	PREDICTED: Rattus norvegicus developmental pluripotency associated 1 (predicted) (Dppa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663147-S	ILMN_269471	LOC683347	XM_001065546.1	XM_001065546.1		683347	109505381	XM_001065546.1	LOC683347	XP_001065546.1	ILMN_1369855	0005900133	S	754	TGGCGACACTAGGGCCCATTTCTGTTGCAATTGATGCAAGGCATGAATCC					PREDICTED: Rattus norvegicus similar to cathepsin M (LOC683347), mRNA.					
Rattus norvegicus	RefSeq	GI_31341326-S	ILMN_269471	LOC683347	XM_001065546.1	XM_001065546.1		683347	109505381	XM_001065546.1	LOC683347	XP_001065546.1	ILMN_1366028	0001400047	S	1109	ATCAGCTGGCCATTCCTGTGTATGTAAGACACTGCAGTCATTGGAAGGCC					PREDICTED: Rattus norvegicus similar to cathepsin M (LOC683347), mRNA.					
Rattus norvegicus	RefSeq	GI_47577158	ILMN_301300	OLR74	NM_001000134.1	NM_001000134.1		293218	47577158	NM_001000134.1	Olr74	NP_001000134.1	ILMN_1650128	0003120086	S	893	CAAAACAGATCAGGGACAGGGTTACCCGAGGGTTTTGTGGTAAAGGCTCA	1	+	160826567-160826616	1q32	Rattus norvegicus olfactory receptor 74 (Olr74), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr74; ratchr1-160904696-160905640_ORF	Olr74; ratchr1-160904696-160905640_ORF
Rattus norvegicus	RefSeq	GI_62652256-S	ILMN_269107	CENTG1	XM_001054911.1	XM_001054911.1		65218	109482053	XM_001054911.1	Centg1	XP_001054911.1	ILMN_1373624	0003840180	S	4231	AGCAGTGCTGCCAGCTTGGGTCGCGTGGACACCACGATCGCGCTGGTATA				7q22	PREDICTED: Rattus norvegicus centaurin, gamma 1 (Centg1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527923-S	ILMN_299081	CD8A	NM_031538.2	NM_031538.2		24930	57527923	NM_031538.2	Cd8a	NP_113726.1	ILMN_1360190	0002260411	S	1164	CAGGGAGCAAGTGGTATGAACCTGTGATCTGCTCAGCTCTGCCTGTGAGC	4	+	104593934-104593983	4q33	Rattus norvegicus CD8a molecule (Cd8a), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process involved in the carrying out of an immune response by a T cell [goid 2456] [evidence ISS]; Any process involved in the carrying out of an immune response by a T cell [goid 2456] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence IMP]; The process whereby a relatively unspecialized T cell acquires specialized features of a cytotoxic T cell [goid 45065] [evidence ISS]; The process whereby a relatively unspecialized T cell acquires specialized features of a cytotoxic T cell [goid 45065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660518-S	ILMN_55571	LOC498373	XM_573608.1	XM_573608.1		498373	62660518	XM_573608.1	LOC498373	XP_573608.1	ILMN_1374086	0003290592	S	1229	CCAGCATCCTCACGAATGCCCCCAGGAAAGGCTTTGGTTAAAGAAGGGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC498373), mRNA.					
Rattus norvegicus	RefSeq	GI_62655933	ILMN_62781	LOC497880	XM_579755.1	XM_579755.1		497880	62655933	XM_579755.1	LOC497880	XP_579755.1	ILMN_1650715	0000840551	S	121	GCTTCCAGGGCAGAGTTGTACTCCACTGGCACGCAGACTGACTCCACGAT					PREDICTED: Rattus norvegicus LOC497880 (LOC497880), mRNA.					
Rattus norvegicus	RefSeq	GI_19424239-S	ILMN_268483	PCSK4	NM_133559.1	NM_133559.1		171085	19424239	NM_133559.1	Pcsk4	NP_598243.1	ILMN_1373785	0000730093	S	2212	CCAGGCCGGGATAGGAATATGCCCCAGAAGGCCACGGCAGAGAGCTGCAT	7	+	10900695-10900744	7q11	Rattus norvegicus proprotein convertase subtilisin/kexin type 4 (Pcsk4), mRNA.	The membrane that surrounds the acrosomal lumen. The acrosome is a special type of lysosome in the head of a spermatozoon that contains acid hydrolases and is concerned with the breakdown of the outer membrane of the ovum during fertilization [goid 2080] [evidence ISS]	The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19424171-S	ILMN_266625	TCFE2A	XM_001076440.1	XM_001076440.1		171046	109481565	XM_001076440.1	Tcfe2a	XP_001076440.1	ILMN_1360896	0005670487	S	1115	TGTGAGCCGTCACAGGGTCTTCGTTGGACCAGGGACCACCACATCTCTGC				7q11	PREDICTED: Rattus norvegicus transcription factor E2a (Tcfe2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence ISS]; The process whereby a lymphoid progenitor cell becomes committed to become any type of B cell [goid 2326] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661918-S	ILMN_68323	LOC501995	XM_577422.1	XM_577422.1		501995	62661918	XM_577422.1	LOC501995	XP_577422.1	ILMN_1372767	0006180632	S	1446	GTGCCGAAAGTGCTGCGAAGCTTTTATAAGCCACCTACGTTCCTGCGCCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630038E17 (LOC501995), mRNA.					
Rattus norvegicus	RefSeq	GI_62650075-S	ILMN_62144	DNAJC11_PREDICTED	XM_342983.3	XM_342983.3		362666	109475875	XM_342983.3	Dnajc11_predicted	XP_342984.2	ILMN_1361685	0005360519	S	1983	ACAGCAGCTCTCTGGAGGCGTTTGGAACACTCTGCCCTCACACATGGGAC	5	+	169208358-169208407	5q36	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 11 (predicted) (Dnajc11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591968-S	ILMN_270742	GYG1	NM_031043.1	NM_031043.1		81675	13591968	NM_031043.1	Gyg1	NP_112305.1	ILMN_1356171	0000840692	S	1466	CCAGCTAGTGTTAGTTCACCAGTTTTCTATGCACCATGAAGGCGGCATGC	2	-	105264753-105264802	2q24	Rattus norvegicus glycogenin 1 (Gyg1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin [goid 8466] [evidence IEA]; Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin [goid 8466] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Gyg	Gyg
Rattus norvegicus	RefSeq	GI_48675844-S	ILMN_274281	ATIC	NM_031014.2	NM_031014.2		81643	48675844	NM_031014.2	Atic	NP_112276.2	ILMN_1364236	0000540168	S	2321	AGACTTGGACTGTGTGTTGGGGGCGGGGGAGGTGACAGGACTGAATCTGT	9	+	70696701-70696750	9q33	Rattus norvegicus 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (Atic), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate [goid 6188] [evidence IEA]; The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate [goid 6189] [evidence NAS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]	Catalysis of the reaction: IMP + H2O = 5-formamido-1-(5-phosphoribosyl)imidazole-4-carboxamide [goid 3937] [evidence IDA]; Catalysis of the reaction: IMP + H2O = 5-formamido-1-(5-phosphoribosyl)imidazole-4-carboxamide [goid 3937] [evidence IEA]; Catalysis of the reaction: 10-formyltetrahydrofolate + 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide = tetrahydrofolate + 5'-phosphoribosyl-5-formamido-4-imidazolecarboxamide [goid 4643] [evidence IDA]; Catalysis of the reaction: 10-formyltetrahydrofolate + 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide = tetrahydrofolate + 5'-phosphoribosyl-5-formamido-4-imidazolecarboxamide [goid 4643] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605659-S	ILMN_301710	CCDC52	NM_001008285.1	NM_001008285.1		288111	56605659	NM_001008285.1	Ccdc52	NP_001008286.1	ILMN_1357257	0002900280	S	2578	CTGAGAAGCAAAGTGAGGAAGGCTGGTTTGCTCTTTCTGCCCACTTACCG	11	-	57837122-57837171	11q21	Rattus norvegicus coiled-coil domain containing 52 (Ccdc52), mRNA.				RGD1310729; MGC95293	RGD1310729; MGC95293
Rattus norvegicus	RefSeq	GI_57114215	ILMN_276434	V1RC2	NM_001008970.1	NM_001008970.1		494313	57114215	NM_001008970.1	V1rc2	NP_001008970.1	ILMN_1651154	0003360239	S	578	CAACAAGCACATACATGGTGATCCTCTTGTTCAGGCATCACAGGCAATGC	4	+	86731002-86731051	4q24	Rattus norvegicus vomeronasal 1 receptor, C2 (V1rc2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647337-S	ILMN_62225	NT5C3_PREDICTED	XM_231803.4	XM_231803.4		312373	109472097	XM_231803.4	Nt5c3_predicted	XP_231803.3	ILMN_1354867	0001170707	S	1649	ACCACTGCTAGCTTCGTAATTGGGGTGGACTGTGGCCGTATCAGCTCCTG	4	-	85871024-85871073	4q24	PREDICTED: Rattus norvegicus 5'-nucleotidase, cytosolic III (predicted) (Nt5c3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657329-S	ILMN_268189	OTOP2_PREDICTED	XM_001081682.1	XM_001081682.1		287820	109492184	XM_001081682.1	Otop2_predicted	XP_001081682.1	ILMN_1355498	0000510441	S	2126	ATCGACATGCCCATTTATTCCTGCATGACCCTAGAGCTTGGGGAGACCCA				10q32.2-q32.3	PREDICTED: Rattus norvegicus otopetrin 2 (predicted) (Otop2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981523-S	ILMN_302725	SELP	NM_013114.1	NM_013114.1		25651	6981523	NM_013114.1	Selp	NP_037246.1	ILMN_1367054	0000050093	S	2985	GGTCACAGTTATACTCCTCCAAATGACAGCTGGACCCTCCCAGTGAGCCC	13	+	79921978-79922027	13q22	Rattus norvegicus selectin, platelet (Selp), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding the platelet alpha granule [goid 31092] [evidence ISS]	Any process that modulates the frequency, rate, or extent of cellular extravasation [goid 2691] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence IEA]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IMP]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IMP]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence IEA]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence ISS]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with sialic acid, any of a variety of N- or O- substituted derivatives of neuraminic acid, a nine carbon monosaccharide. Sialic acids often occur in polysaccharides, glycoproteins, and glycolipids in animals and bacteria [goid 33691] [evidence IEA]; Interacting selectively with sialic acid, any of a variety of N- or O- substituted derivatives of neuraminic acid, a nine carbon monosaccharide. Sialic acids often occur in polysaccharides, glycoproteins, and glycolipids in animals and bacteria [goid 33691] [evidence ISS]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]	MGC124632; PSELECT	MGC124632; PSELECT
Rattus norvegicus	RefSeq	GI_62642684-S	ILMN_266103	LOC680620	XM_001056515.1	XM_001056515.1		680620	109464202	XM_001056515.1	LOC680620	XP_001056515.1	ILMN_1371846	0002230575	S	660	CGGAAGCGGAGACGAGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGA	2	+	5621919-5621968	2q11	PREDICTED: Rattus norvegicus similar to Sperm 1 POU-domain transcription factor (SPRM-1) (LOC680620), mRNA.					
Rattus norvegicus	RefSeq	GI_62645365-S	ILMN_263770	LOC499828	XM_001076779.1	XM_001076779.1		499828	109470260	XM_001076779.1	LOC499828	XP_001076779.1	ILMN_1369886	0003390280	S	482	ACGTCCCTCACACGCCAGTCAGAACTGCGAAGCCTGTTCTTTGATCCTGG				3q24	PREDICTED: Rattus norvegicus similar to copine VIII isoform 1 (LOC499828), mRNA.					
Rattus norvegicus	RefSeq	GI_62660251-S	ILMN_267438	RGD1563483_PREDICTED	XM_577328.1	XM_577328.1		501904	62660251	XM_577328.1	RGD1563483_predicted	XP_577328.1	ILMN_1370792	0002030647	S	1307	GTCGTGAGCTCATAGATACACTCAGGGCAATACGGCAGCCCTATAACATC	14	+	16193872-16193921	14p22	PREDICTED: Rattus norvegicus similar to CDNA sequence BC061212 (predicted) (RGD1563483_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657689-S	ILMN_62963	B3GALT5_PREDICTED	XM_221525.4	XM_221525.4		288161	109492955	XM_221525.4	B3galt5_predicted	XP_221525.4	ILMN_1363983	0005080152	S	524	CCAGGTTCTTCACAGGCTACATAAAGCCCCACGACTTTCCCATCAGGCAG	11	+	36637446-36637495	11q11	PREDICTED: Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 (predicted) (B3galt5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642140-S	ILMN_50778	LOC499341	XM_574651.1	XM_574651.1		499341	62642140	XM_574651.1	LOC499341	XP_574651.1	ILMN_1363586	0001090053	S	1100	CAGCAGCCAAGTGCGGAGAAGCGGCTGTGATCAGTTCAAGATGTGGGAGC					PREDICTED: Rattus norvegicus similar to Ac1292 (LOC499341), mRNA.					
Rattus norvegicus	RefSeq	GI_6981109-S	ILMN_271160	ITPR3	NM_013138.1	NM_013138.1		25679	6981109	NM_013138.1	Itpr3	NP_037270.1	ILMN_1357844	0005130685	S	8547	ATTTAACTTATTCTGGGGGCCATCCCAACCTCCTGTGGCCTGCTGGGGAC	20	+	5357248-5357297	20p12	Rattus norvegicus inositol 1,4,5-triphosphate receptor 3 (Itpr3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The series of events required to receive a bitter taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50913] [evidence ISS]; The series of events required to receive a sweet taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50916] [evidence ISS]; The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates [goid 50917] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Interacting selectively with inositol hexakisphosphate [goid 822] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA];  [goid 5220] [evidence ISS];  [goid 5220] [evidence IEA];  [goid 5220] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Combining with inositol-1,4,5-triphosphate to initiate a change in cell activity [goid 8095] [evidence TAS]; Combining with inositol-1,4,5-triphosphate to initiate a change in cell activity [goid 8095] [evidence ISS]; Combining with inositol-1,4,5-triphosphate to initiate a change in cell activity [goid 8095] [evidence IEA]; Catalysis of the transfer of calcium (Ca) ions from one side of a membrane to the other [goid 15085] [evidence TAS]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence ISS]; Interacting selectively with inositol 1,3,4,5 tetrakisphosphate [goid 43533] [evidence IDA]	IP3R3X	IP3R3X
Rattus norvegicus	RefSeq	GI_57977322-S	ILMN_293138	CNP	NM_012809.1	NM_012809.1		25275	57977322	NM_012809.1	Cnp	NP_036941.1	ILMN_1364419	0004760164	S	2088	CCTGAGCCAGCAAGAGTAAGCCCCATCTGCTCTGGGGAAGTCTGAACACG	10	+	89525766-89525815	10q32.1	Rattus norvegicus 2',3'-cyclic nucleotide 3' phosphodiesterase (Cnp), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31224] [evidence IMP]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IMP]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue [goid 9214] [evidence IEA]; The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]	Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate [goid 4113] [evidence TAS]; Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate [goid 4113] [evidence IEA]; Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate [goid 4113] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Cnp; CNPF; CNPII; CNPI	Cnp; CNPF; CNPII; CNPI
Rattus norvegicus	RefSeq	GI_34875548-S	ILMN_279179	RGD1565438_PREDICTED	XM_001077161.1	XM_001077161.1		364460	109502917	XM_001077161.1	RGD1565438_predicted	XP_001077161.1	ILMN_1361384	0000670400	S	64	AGTTCATCCGGAACTTCGTGGAGAAGGCACTGTCAATGGTGGCCGCTGCC				15q22	PREDICTED: Rattus norvegicus similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g (predicted) (RGD1565438_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658650-S	ILMN_275913	RGD1560474_PREDICTED	XM_001074947.1	XM_001074947.1		501814	109496695	XM_001074947.1	RGD1560474_predicted	XP_001074947.1	ILMN_1359616	0004780463	S	240	GGTGGGGCACCAGAGGCAGAAGCGAAGGCTCCTGAGAGGATGTGGAAAAC				12q11	PREDICTED: Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (predicted) (RGD1560474_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242323-S	ILMN_289400	HNRPD	NM_024404.1	NM_024404.1		79256	13242323	NM_024404.1	Hnrpd	NP_077380.1	ILMN_1356233	0001740433	S	866	TTTGCAGGAAGAGCTCGCGGAAGAGGCGGTGGCCCCAGTCAAAACTGGAA	14	+	10933009-10933039:10933146-10933164	14p22	Rattus norvegicus heterogeneous nuclear ribonucleoprotein D (Hnrpd), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap or the 3'-poly(A) tail [goid 291] [evidence TAS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence TAS]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence IDA]	Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641630-S	ILMN_262777	TOLLIP_PREDICTED	XM_001063419.1	XM_001063419.1		361677	109463196	XM_001063419.1	Tollip_predicted	XP_001063419.1	ILMN_1371790	0000460348	S	1884	CAAGCATCGTGACACTACTGACCTGCAGTACACTCTATGGACCCACACTG				1q41	PREDICTED: Rattus norvegicus toll interacting protein (predicted) (Tollip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21728407-S	ILMN_275958	VPS4A	NM_145678.1	NM_145678.1		246772	21728407	NM_145678.1	Vps4a	NP_663711.1	ILMN_1352931	0006940364	S	1233	GGCCACTACCCGGCCCACAGTGAATGCAGATGACCTCCTGAAAGTAAAGA	19	+	36900783-36900832	19q12	Rattus norvegicus vacuolar protein sorting 4 homolog A (S. cerevisiae) (Vps4a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence IEA]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence IC ]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IPI]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654310-S	ILMN_50717	LOC315987	XM_236612.3	XM_236612.3		315987	62654310	XM_236612.3	LOC315987	XP_236612.3	ILMN_1350018	0005130750	S	4525	CTGATGCAGATGAGGAAGTGGAACTGATCCTGGGGGACACAGACAGCTCG				8q32	PREDICTED: Rattus norvegicus similar to mKIAA0800 protein (predicted) (LOC315987), mRNA.					
Rattus norvegicus	RefSeq	GI_62654145-S	ILMN_262685	TCFDP2_PREDICTED	XM_001069174.1	XM_001069174.1		300947	109485211	XM_001069174.1	Tcfdp2_predicted	XP_001069174.1	ILMN_1363133	0004610451	S	1080	ACCGGTGCCACTGTACCCCAATCAAGTGTAAACCAAGGGTTGTGCTTGGA				8q31	PREDICTED: Rattus norvegicus transcription factor Dp 2 (predicted) (Tcfdp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649869-S	ILMN_51730	RGD1561426_PREDICTED	XM_347067.3	XM_347067.3		362633	109475681	XM_347067.3	RGD1561426_predicted	XP_347068.3	ILMN_1373138	0003610195	S	248	TACTACCTCCCCAAGTTGCAGAACGGTTCCTCGAAGTCAGAGGTGCCCCC	5	+	155392094-155392118:155395435-155395459	5q36	PREDICTED: Rattus norvegicus RGD1561426 (predicted) (RGD1561426_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.19441	ILMN_160566	RN.19441	Rn.19441		Rn.19441		82518516	DV725193			ILMN_1530535	0004670139	S	687	ATGGGGACTGTTATGTTTTAACCTGTATATAATATTTGACTGTTTTGGTT					RVL17311 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_19924070-S	ILMN_263456	GRIP2	NM_138535.1	NM_138535.1		171571	19924070	NM_138535.1	Grip2	NP_612544.1	ILMN_1349817	0001940647	S	5311	CTGGGGCCCACCTATAAATCTTTGTCCCACCAGGCATCACAGTGACTGGG	4	-	125952007-125952056	4q34	Rattus norvegicus glutamate receptor interacting protein 2 (Grip2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [pmid 9768844] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [pmid 9768844] [evidence IDA]		Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [pmid 9768844] [evidence IPI]	Abp	Abp
Rattus norvegicus	RefSeq	GI_62657394-S	ILMN_61628	LOC363697	XM_577135.1	XM_577135.1		363697	62657394	XM_577135.1	LOC363697	XP_577135.1	ILMN_1348844	0006100524	S	316	CGACGAATCCAGGGACTGTATCAACAGGTTTTGGTCTCCACACTCCAGTC				10q32.1	PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2C (LOC363697), mRNA.					
Rattus norvegicus	RefSeq	GI_62659845-S	ILMN_51562	LOC497693	XM_579635.1	XM_579635.1		497693	62659845	XM_579635.1	LOC497693	XP_579635.1	ILMN_1360301	0004060711	S	0	TGGGTGCAGGCCTGGTGTGGTCTCCAAAGTGACTGAACAATGCAGAAGGA					PREDICTED: Rattus norvegicus similar to P11 protein (LOC497693), mRNA.					
Rattus norvegicus	RefSeq	GI_62647189-S	ILMN_54804	LOC500107	XM_575458.1	XM_575458.1		500107	62647189	XM_575458.1	LOC500107	XP_575458.1	ILMN_1351881	0005340538	S	2068	AGGGCCTGCACACAGGCGAGAGACCTTTCCACTGCCCTGAATGTGATAAA					PREDICTED: Rattus norvegicus similar to hypothetical protein A730012O14 (LOC500107), mRNA.					
Rattus norvegicus	RefSeq	GI_62643268-S	ILMN_62478	LOC365745	XM_345189.2	XM_345189.2		365745	62643268	XM_345189.2	LOC365745	XP_345190.2	ILMN_1358677	0004920093	S	224	TTGGTATGATGCCTCCTCACCCTTGGCTCAGGTGTTTACCAGCCGCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00187 (LOC365745), mRNA.					
Rattus norvegicus	RefSeq	GI_62645383-S	ILMN_267364	PTPMT1	XM_001077901.1	XM_001077901.1		29390	109470306	XM_001077901.1	Ptpmt1	XP_001077901.1	ILMN_1354391	0005420333	S	414	GTGCAACACCTCGAAGGAATGGAAGAATGTGGGAGTTGAGCAGCTACGGC				3q24	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, mitochondrial 1 (Ptpmt1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate [goid 4439] [evidence ISS]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate [goid 4439] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57012437-S	ILMN_302020	KRT32	NM_001008818.1	NM_001008818.1		450230	57012437	NM_001008818.1	Krt32	NP_001008818.1	ILMN_1355311	0004050008	S	1302	TCCCACCAAGGCAAGTGTTGTAAACTCACATGCTTGCCAGGGACAGGCTG	10	-	89020235-89020284	10q32.1	Rattus norvegicus keratin 32 (Krt32), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659402	ILMN_66717	LOC363995	XM_344147.2	XM_344147.2		363995	62659402	XM_344147.2	LOC363995	XP_344148.2	ILMN_1650224	0006020128	S	1306	GATGACTCAGCACGCGCCGCTTTCCGCCCCACGCTCAAGCTCAAGGATTA				13q13	PREDICTED: Rattus norvegicus similar to Williams-Beuren syndrome critical region protein 27 (predicted) (LOC363995), mRNA.					
Rattus norvegicus	RefSeq	GI_62653662-S	ILMN_64374	LOC315651	XM_243842.3	XM_243842.3		315651	62653662	XM_243842.3	LOC315651	XP_243842.3	ILMN_1363080	0006100647	S	5053	CCTGGAAGAGTAGGGTAGAACAGGACAGCCTCAATGCAACCACCCCAGCC				8q24	PREDICTED: Rattus norvegicus hypothetical LOC315651 (LOC315651), mRNA.					
Rattus norvegicus	RefSeq	GI_62656490-S	ILMN_52387	LOC360560	XM_340837.2	XM_340837.2		360560	62656490	XM_340837.2	LOC360560	XP_340838.2	ILMN_1366693	0002190398	S	3342	AGCGAGACCCCTTCACACCAGGAGAGCTGCATGGCCTGAGGATGCTGTCT				10q24	PREDICTED: Rattus norvegicus similar to 4933427D14Rik protein (predicted) (LOC360560), mRNA.					
Rattus norvegicus	RefSeq	GI_62640769-S	ILMN_270896	NGRN	NM_001033900.1	NM_001033900.1		499191	76559926	NM_001033900.1	Ngrn	NP_001029072.1	ILMN_1361181	0002940301	S	780	TACCAAGTGTGGAGAAGCTGGAAGAGTTGGAGGCTGGGGAGCCAGGTGAC	1	+	136080787-136080836	1q31	Rattus norvegicus neugrin, neurite outgrowth associated (Ngrn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		MGC124865	MGC124865
Rattus norvegicus	RefSeq	GI_6981561-A	ILMN_280234	SLC9A3	NM_012654.1	NM_012654.1		24784	6981561	NM_012654.1	Slc9a3	NP_036786.1	ILMN_1376596	0007040435	S	5083	TGTGCCTTAAAATGCCCCCATGTGTTGGGCAGCATCTGTACAAGGAGTCC	1	-	29930933-29930982	1p11	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 3 (Slc9a3), mRNA.	Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IMP]	Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IDA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IMP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Nhe3	Nhe3
Rattus norvegicus	RefSeq	GI_62643090-S	ILMN_53733	LOC301887	XM_229369.3	XM_229369.3		301887	62643090	XM_229369.3	LOC301887	XP_229369.3	ILMN_1371320	0006650204	S	2884	GCTGTGATGGCTTTGCAGGAGTCAGAAATAAGAAGGAACAAAGCAGACAG				2q21	PREDICTED: Rattus norvegicus similar to cadherin 12, type 2 preproprotein (LOC301887), mRNA.					
Rattus norvegicus	RefSeq	GI_62718847-S	ILMN_68038	LOC501497	XM_580202.1	XM_580202.1		501497	62718847	XM_580202.1	LOC501497	XP_580202.1	ILMN_1349636	0004120176	S	614	CAGAGCTCTCCTAGGAACAGAGGGAAAGCAGGAGACGTCCTACCTCTCTG					PREDICTED: Rattus norvegicus LOC501497 (LOC501497), mRNA.					
Rattus norvegicus	RefSeq	GI_62661082-S	ILMN_57059	LOC501953	XM_577380.1	XM_577380.1		501953	62661082	XM_577380.1	LOC501953	XP_577380.1	ILMN_1353061	0002320603	S	2	GGCATTTCCCAGTGACATCACCGAGTTTGATCAGAAGGCATCGTCCCAAC				15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F09 (LOC501953), mRNA.					
Rattus norvegicus	RefSeq	GI_62648594-S	ILMN_54184	LOC366305	XM_575760.1	XM_575760.1		366305	62648594	XM_575760.1	LOC366305	XP_575760.1	ILMN_1370748	0006510215	S	1285	ACATGCTGAAGGCCCACAAGGAGAAACCCGTCCCACACCCCTTCTCACAC					PREDICTED: Rattus norvegicus similar to zinc finger protein 652 (LOC366305), mRNA.					
Rattus norvegicus	RefSeq	GI_62666866-S	ILMN_285153	PTCHD1_PREDICTED	XM_001056385.1	XM_001056385.1		317517	109511799	XM_001056385.1	Ptchd1_predicted	XP_001056385.1	ILMN_1361901	0001500020	S	2440	GTCTATTTCCTCTCGCAGCTGTGCCTTCAAATCTGACCTGTACACTGTTC				Xq22	PREDICTED: Rattus norvegicus patched domain containing 1 (predicted) (Ptchd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647448-S	ILMN_67321	LOC500193	XM_575545.1	XM_575545.1		500193	62647448	XM_575545.1	LOC500193	XP_575545.1	ILMN_1360021	0003850463	S	188	GGCTGATGATGTTGCAACTTATTACTGTCAGCAAGGCTCCACTGGTGACA				4q32	PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC500193), mRNA.					
Rattus norvegicus	RefSeq	GI_47575936-S	ILMN_265214	OLR1486	NM_001000720.1	NM_001000720.1		404972	47575936	NM_001000720.1	Olr1486	NP_001000720.1	ILMN_1370847	0004060408	S	797	GCTCTACTGTGAAGAAGACTGCCATGACTATGATGTACACTTTGGTGACC	10	-	60713307-60713356	10q24	Rattus norvegicus olfactory receptor 1486 (Olr1486), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1486	Olr1486
Rattus norvegicus	RefSeq	GI_62666814-S	ILMN_50400	LOC307493	XM_226009.3	XM_226009.3		307493	62666814	XM_226009.3	LOC307493	XP_226009.3	ILMN_1361228	0000110025	S	494	TCTGGTAGAAGGGCGGTCACGCCTCGATTCACTGCGGTTTCTAAGGCCAG					PREDICTED: Rattus norvegicus similar to dead end protein (LOC307493), mRNA.					
Rattus norvegicus	RefSeq	GI_62653953-S	ILMN_55659	LOC367076	XM_578729.1	XM_578729.1		367076	62653953	XM_578729.1	LOC367076	XP_578729.1	ILMN_1375138	0000510167	S	10	AGGACCCTGTTGACATCTCCTACTGGGCTGCAGTCTGGCACCTGGGCCTA				8q22	PREDICTED: Rattus norvegicus similar to glutathione S-transferase subunit pi (LOC367076), mRNA.					
Rattus norvegicus	RefSeq	GI_62718488-S	ILMN_63819	LOC301843	XM_229322.3	XM_229322.3		301843	62718488	XM_229322.3	LOC301843	XP_229322.3	ILMN_1353735	0005700170	S	786	CTGTGTTTCAGATACCCACGGGCCTTTGACAACCCCAGTATCTTTTCCAG					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC301843), mRNA.					
Rattus norvegicus	RefSeq	GI_62645256-S	ILMN_292148	HOXD10_PREDICTED	XM_001063804.1	XM_001063804.1		303991	109470117	XM_001063804.1	Hoxd10_predicted	XP_001063804.1	ILMN_1355028	0002370450	S	1726	TTGACTTATGCCTTGTAGCCTTTCCTTGTGGTGCATCTGTGGTTTGGTAG				3q23	PREDICTED: Rattus norvegicus homeo box D10 (predicted) (Hoxd10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527497-S	ILMN_283428	KLC4	NM_001009601.1	NM_001009601.1		316226	57527497	NM_001009601.1	Klc4	NP_001009601.1	ILMN_1369588	0002760377	S	2415	TATGCACCTCAGGGATGCGCCTACTGCTGGCTTTTCCGTCAGTTTGGGGC	9	-	10002300-10002349	9q12	Rattus norvegicus kinesin light chain 4 (Klc4), mRNA.	Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence IEA]		Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	1200014p03rik; MGC94745; Knsl8	1200014p03rik; MGC94745; Knsl8
Rattus norvegicus	RefSeq	GI_62653949-S	ILMN_293300	MLL_MAPPED	XM_001067729.1	XM_001067729.1		315606	109484611	XM_001067729.1	Mll_mapped	XP_001067729.1	ILMN_1352768	0002570114	S	11573	TGATTGAGTACGCCGGCAACGTCATCCGCTCCATCCAGACGGACAAGCGT				8q22	PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (mapped) (Mll_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_50657369-S	ILMN_268965	CREBL1	NM_001002809.1	NM_001002809.1		406169	50657369	NM_001002809.1	Crebl1	NP_001002809.1	ILMN_1349654	0004280100	S	2463	CCAGGTGGGACAAGGGATGGTCTCGGGTGGCACAAGGCAGTTATGTGTGT	20	-	4192251-4192300	20p12	Rattus norvegicus cAMP responsive element binding protein-like 1 (Crebl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	MGC112556	MGC112556
Rattus norvegicus	Unigene	Rn.17428	ILMN_161510	LOC499415	Rn.17428		Rn.17428		62665810	XM_574731	LOC499415		ILMN_1530459	0004480750	S	1259	ACAGTGATAAACAGACTTCTTACAGATGATTTCTATCAGAGAGAGGCAAT					PREDICTED: Rattus norvegicus similar to B7-like protein GL50-B (LOC499415),					
Rattus norvegicus	Unigene	Rn.26636	ILMN_161530	RN.26636	Rn.26636		Rn.26636		5034384	AI717128			ILMN_1530333	0002360647	S	28	TGTTATTTTTCAGGCTAAATGCAACAACGGATTGTATAAACCAATATTTC					UI-R-Y0-abe-d-03-0-UI.s1 UI-R-Y0 Rattus norvegicus cDNA clone UI-R-Y0-abe-d-03-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62651350-S	ILMN_59115	LOC314492	XM_234597.2	XM_234597.2		314492	62651350	XM_234597.2	LOC314492	XP_234597.1	ILMN_1356477	0006660215	S	111	AGCTGGTGGAGTCTGGTGGAGGCTTAGTGCAGCCTGGAAGGTCTCTGAAA				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC314492), mRNA.					
Rattus norvegicus	RefSeq	GI_62663127-S	ILMN_263211	CDC14B_PREDICTED	XM_001059579.1	XM_001059579.1		361195	109505342	XM_001059579.1	Cdc14b_predicted	XP_001059579.1	ILMN_1355439	0004230082	S	1366	CCCTGAAAAGCCGGAGACAGCCGAAAACCAACGCTATCCCCCTCACAGTA				17p14	PREDICTED: Rattus norvegicus CDC14 cell division cycle 14 homolog B (S. cerevisiae) (predicted) (Cdc14b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651226-S	ILMN_271721	RGD1311698_PREDICTED	XM_001069270.1	XM_001069270.1		362781	109479952	XM_001069270.1	RGD1311698_predicted	XP_001069270.1	ILMN_1364996	0003190091	S	2491	TTCATAGGCGGACGCTGGGGCACGGTGTGCGACGACGGCTGGGACATCAA				6q32	PREDICTED: Rattus norvegicus similar to KIAA1822 protein (predicted) (RGD1311698_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576136-S	ILMN_268307	OLR984	NM_001001074.1	NM_001001074.1		405964	47576136	NM_001001074.1	Olr984	NP_001001074.1	ILMN_1349064	0006420156	S	245	TTGTCACCCGGAATAAGACAATTTCCTATAACAACTGTGCTGCCCAGCTC	7	-	5905947-5905996	7q11	Rattus norvegicus olfactory receptor 984 (Olr984), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr984	Olr984
Rattus norvegicus	RefSeq	GI_62718626-S	ILMN_49689	LOC363403	XM_347135.2	XM_347135.2		363403	62718626	XM_347135.2	LOC363403	XP_347136.2	ILMN_1368837	0006840446	S	930	GACTTACAAGAGAATTGGCTTAACGTCCCAGATGAAGGAACTCTGGTTGG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC363403), mRNA.					
Rattus norvegicus	RefSeq	GI_62638846-S	ILMN_69839	ZFP444_PREDICTED	XM_214805.4	XM_214805.4		292569	109457931	XM_214805.4	Zfp444_predicted	XP_214805.4	ILMN_1372324	0004060397	S	951	TTCGCCTGCTGGGAGTGTGGCAAGGGCTTCGGGAGACGTGAGCATGTGCT	1	-	66145868-66145917	1q12	PREDICTED: Rattus norvegicus zinc finger protein 444 (predicted) (Zfp444_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654792-S	ILMN_52545	RGD1304927_PREDICTED	XM_346029.3	XM_346029.3		367235	109485834	XM_346029.3	RGD1304927_predicted	XP_346030.3	ILMN_1353724	0003800170	S	5765	GCACTGAGGGTGGGTGCTAAGTCTGTTTCCGTTCACCAGTTGCTGTGGAC	9	-	22725653-22725702	9q13	PREDICTED: Rattus norvegicus similar to KIAA1411 protein (predicted) (RGD1304927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652532-A	ILMN_50905	CYP11B1	XM_579335.1	XM_579335.1		24293	62652532	XM_579335.1	Cyp11b1	XP_579335.1	ILMN_1376275	0004050184	S	2573	GACTTCTGTAAGCCGAGGAAAGCAGTTGGAACTCCTGTAGTCTTGGCTCC					PREDICTED: Rattus norvegicus cytochrome P450, subfamily 11B, polypeptide 1 (Cyp11b1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IDA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence TAS]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence TAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance [goid 32342] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IEA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O [goid 47783] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577424-S	ILMN_282169	OLR459	NM_001000293.1	NM_001000293.1		295729	47577424	NM_001000293.1	Olr459	NP_001000293.1	ILMN_1356529	0002810139	S	534	TGACTTGCTTCCCTTGGTGAATCTGGCTTGCGGTGGCAAGGAAGGATACC	3	-	69038914-69038963	3q24	Rattus norvegicus olfactory receptor 459 (Olr459), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr459	Olr459
Rattus norvegicus	RefSeq	GI_16758335-S	ILMN_296404	SOCS3	NM_053565.1	NM_053565.1		89829	16758335	NM_053565.1	Socs3	NP_446017.1	ILMN_1364483	0000060717	S	740	CTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAATGGTCGGTAG	10	-	107958541-107958590	10q32.3	Rattus norvegicus suppressor of cytokine signaling 3 (Socs3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence TAS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence TAS]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ssi-3; Cish3; Socs-3	Ssi-3; Cish3; Socs-3
Rattus norvegicus	RefSeq	GI_62645283-S	ILMN_265831	OLR595	NM_001006596.1	NM_001006596.1		406050	54635057	NM_001006596.1	Olr595	NP_001006596.1	ILMN_2040340	0006520224	S	832	CCACTGATATACAGCCTGAGGAACAAGGAGGTGATTTCAGCTCTTAGGAA	3	+	71629172-71629221	3q24	Rattus norvegicus olfactory receptor 595 (Olr595), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr595	Olr595
Rattus norvegicus	RefSeq	GI_54635057-S	ILMN_265831	OLR595	NM_001006596.1	NM_001006596.1		406050	54635057	NM_001006596.1	Olr595	NP_001006596.1	ILMN_1351446	0004210064	S	507	CTGTGACATACCACCAATTCTCAAGCTGGCTTGTGGGGACACTACAATGC	3	+	71628847-71628896	3q24	Rattus norvegicus olfactory receptor 595 (Olr595), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr595	Olr595
Rattus norvegicus	RefSeq	GI_62665416-S	ILMN_47773	LOC292082	XM_214707.3	XM_214707.3		292082	62665416	XM_214707.3	LOC292082	XP_214707.3	ILMN_1373089	0000940142	S	2594	AGGGTTTTCCCCGAGTCCGCAGTACCAGGACCCTACCTGCTCCTTGCTAA				19q12	PREDICTED: Rattus norvegicus similar to FKSG26 protein (predicted) (LOC292082), mRNA.					
Rattus norvegicus	RefSeq	GI_62642199-S	ILMN_270893	LOC685245	XM_001062991.1	XM_001062991.1		685245	109460068	XM_001062991.1	LOC685245	XP_001062991.1	ILMN_1359703	0006550301	S	1386	GAAGCTGTCAGAAGGCCTGGAAGGCACCAAGCATAGCAGCGTGATGAAGC	1	-	238969060-238969109	1q52	PREDICTED: Rattus norvegicus similar to CG4573-PA (LOC685245), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA [goid 6424] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu) [goid 4818] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641237-S	ILMN_270893	LOC685245	XM_001062991.1	XM_001062991.1		685245	109460068	XM_001062991.1	LOC685245	XP_001062991.1	ILMN_1349955	0001980279	S	1663	TAGAAACAGGCTCTCTGACTACTCTCAGCTGGCCTCTGGGGAGCCTGGCT	1	-	238968783-238968832	1q52	PREDICTED: Rattus norvegicus similar to CG4573-PA (LOC685245), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA [goid 6424] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu) [goid 4818] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34867676-S	ILMN_267239	SERPINA3M	XM_001067511.1	XM_001067511.1		299276	109479900	XM_001067511.1	Serpina3m	XP_001067511.1	ILMN_1362268	0004570086	S	1367	CTACCCAGGTCCATGAGACCGAGCCTGCATGTGGATCTCTGTGTATAACC				6q32	PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade A, member 3M (Serpina3m), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928689-S	ILMN_268026	IDH1	NM_031510.1	NM_031510.1		24479	13928689	NM_031510.1	Idh1	NP_113698.1	ILMN_1353960	0006220102	S	1641	GGAGAGGCTCACCTCCCCTACTGTCCATGAGTGTGAACACAGGGAGCAAA	9	-	63769429-63769478	9q32	Rattus norvegicus isocitrate dehydrogenase 1 (NADP+), soluble (Idh1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate [goid 6097] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle [goid 6102] [evidence IEA]; The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle [goid 6102] [evidence IDA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence TAS]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence ISS]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence IEA]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653101-S	ILMN_57224	LOC503172	XM_578695.1	XM_578695.1		503172	62653101	XM_578695.1	LOC503172	XP_578695.1	ILMN_1370277	0003120280	S	981	CTCTATCGTCCAAGCTTTGTTCATCCAGGGGCTGCCACAGTCCCCACCAT					PREDICTED: Rattus norvegicus similar to DAZ associated protein 2 (LOC503172), mRNA.					
Rattus norvegicus	RefSeq	GI_47577402-S	ILMN_282988	OLR44	NM_001000125.1	NM_001000125.1		293193	47577402	NM_001000125.1	Olr44	NP_001000125.1	ILMN_1362356	0002480619	S	565	GCTTGTGGGGGCACCCAACCAAACAATATATATGGCATCACAGCAGCCAC	1	-	160220581-160220630	1q32	Rattus norvegicus olfactory receptor 44 (Olr44), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-160300212-160299265_ORF; Olr44	ratchr1-160300212-160299265_ORF; Olr44
Rattus norvegicus	RefSeq	GI_62638746-S	ILMN_49999	LOC365506	XM_345061.3	XM_345061.3		365506	109460328	XM_345061.3	LOC365506	XP_345062.3	ILMN_1367403	0006900458	S	853	CTTTTGGTTTCCCGGAACGCTTCCTTGGACTTCTGTATGACGGGATAAAG	1|NW_047580.1	-	349373-349422		PREDICTED: Rattus norvegicus similar to KP78b CG17216-PA (LOC365506), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642591-S	ILMN_49999	LOC365506	XM_345061.3	XM_345061.3		365506	109460328	XM_345061.3	LOC365506	XP_345062.3	ILMN_1359722	0001570176	S	1524	CGTCTCAGGCCACTACCGATGACACCTACACAGGACCACTATCACAAGTG	1|NW_047580.1	-	348702-348751		PREDICTED: Rattus norvegicus similar to KP78b CG17216-PA (LOC365506), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981663-S	ILMN_280392	TNFRSF1A	NM_013091.1	NM_013091.1		25625	6981663	NM_013091.1	Tnfrsf1a	NP_037223.1	ILMN_1373313	0001410746	S	1813	AGCCACTTGTGCATGGCAGGGAAGTGTGCCATCTGCTCCCAGACAGCTGA	4	+	162184950-162184999	4q42	Rattus norvegicus tumor necrosis factor receptor superfamily, member 1a (Tnfrsf1a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases angiogenesis [goid 45766] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence NAS]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence ISS]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	Tnfr1; MGC105478	Tnfr1; MGC105478
Rattus norvegicus	RefSeq	GI_62645913-S	ILMN_263605	MCM8_PREDICTED	XM_001079873.1	XM_001079873.1		296178	109470739	XM_001079873.1	Mcm8_predicted	XP_001079873.1	ILMN_1364275	0000430017	S	2090	GGCAGCTCGCCCATCACCACTCGGCAGCTGGAATCTTTGATCCGTCTGAC				3q36	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 8 (S. cerevisiae) (predicted) (Mcm8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643312-S	ILMN_64703	RGD1561457_PREDICTED	XM_345198.3	XM_345198.3		365763	109464715	XM_345198.3	RGD1561457_predicted	XP_345199.2	ILMN_1352605	0001240750	S	1054	CGGTGTGGATGGGGGGATCTATTCTTGCATCCTTGTCTGCCTTCCAAGAC	2	+	117219681-117219730	2q24	PREDICTED: Rattus norvegicus similar to Actin related protein M1 (predicted) (RGD1561457_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58037554-S	ILMN_276459	RGS8	NM_019344.2	NM_019344.2		54297	58037554	NM_019344.2	Rgs8	NP_062217.1	ILMN_1371675	0006760020	S	3385	GAGCTTCTAGCCCTGGTACCTCCTCTTAGGCACTTTAGTCATGCTAGCCC	13	+	68766741-68766790	13q21	Rattus norvegicus regulator of G-protein signaling 8 (Rgs8), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	MGC105444	MGC105444
Rattus norvegicus	RefSeq	GI_62657458-S	ILMN_266806	LOC498029	XR_005461.1	XR_005461.1		498029	109489484	XR_005461.1	LOC498029		ILMN_1370797	0003870193	S	951	CAGGAGCAGAAGGACCAGCAGTTGAAGGGAACTAGGTGTCAGGAAGACCC	10	+	108882834-108882883	10q32.3	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A730011L01 gene (LOC498029), misc RNA.					
Rattus norvegicus	RefSeq	GI_23463282-S	ILMN_265615	ALDH1A3	NM_153300.1	NM_153300.1		266603	23463282	NM_153300.1	Aldh1a3	NP_695212.1	ILMN_1352205	0004200239	S	1368	CGCGCTCGAGTCGGGGACAGTCTGGGTCAACTGCTACAACGCATTCTATG	1	-	120847779-120847818:120853613-120853622	1q22	Rattus norvegicus aldehyde dehydrogenase 1 family, member A3 (Aldh1a3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence NAS]	The invagination of the optic vesicle to form two-walled indentations, the optic cups, that will go on to form the retina. This process begins with the optic vesicle becoming a two-walled structure and its subsequent shape changes. It does not include the fate commitment of cells to become the pigmented retina and the neural retina [goid 2072] [evidence ISS]; The progression of the nucleus accumbens over time from its initial formation until its mature state. The nucleus accumbens is a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia [goid 21768] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. Morphogenesis pertains to the creation of form [goid 48048] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The biological process whose specific outcome is the progression of the olfactory pit from an initial condition to its mature state. This process begins with the formation of the olfactory pit, which is an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx [goid 60166] [evidence ISS]	Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [goid 4030] [evidence IDA]; Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [goid 4030] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Aldh6	Aldh6
Rattus norvegicus	RefSeq	GI_62653935-S	ILMN_54821	LOC300490	XM_235992.3	XM_235992.3		300490	62653935	XM_235992.3	LOC300490	XP_235992.3	ILMN_1367147	0001400133	S	1939	AGGCCCCAGCAGGCACGGAAACAGCATCTATCACCTCAAGTCCAGACCCT					PREDICTED: Rattus norvegicus similar to carcinoembryonic antigen-related cell adhesion molecule 5 (LOC300490), mRNA.					
Rattus norvegicus	RefSeq	GI_16758319-S	ILMN_282837	TNFSF4	NM_053552.1	NM_053552.1		89814	16758319	NM_053552.1	Tnfsf4	NP_446004.1	ILMN_1350467	0001170280	S	1117	GGTGTCTACCAGCCAGTAGGAGCTGGAGTGCTCTATTCAAGGTTAAGGTG	13	+	77049557-77049606	13q22	Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 4 (Tnfsf4), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IMP]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence IDA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IPI]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence ISS]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any member of the tumor necrosis factor receptor superfamily [goid 32813] [evidence IPI]; Interacting selectively with any member of the tumor necrosis factor receptor superfamily [goid 32813] [evidence IMP]	Ox40l	Ox40l
Rattus norvegicus	RefSeq	GI_62662901-S	ILMN_53868	LOC502092	XM_577532.1	XM_577532.1		502092	62662901	XM_577532.1	LOC502092	XP_577532.1	ILMN_1371011	0006020315	S	305	CCAAGACGCCACACCCAATGACCAAGACGCCACACCCAATGACCAAGACG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502092), mRNA.					
Rattus norvegicus	RefSeq	GI_62645112-S	ILMN_269531	CACNB4	XM_001056830.1	XM_001056830.1		58942	109469864	XM_001056830.1	Cacnb4	XP_001056830.1	ILMN_1371615	0004070070	S	3621	AGCTAACATCTGACACTGGCTTGTGAAGCTTTTTTGTCATCCAGCGAGGC				3q12	PREDICTED: Rattus norvegicus calcium channel, voltage-dependent, beta 4 subunit, transcript variant 7 (Cacnb4), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IMP]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence ISS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence ISS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The regulated release of gamm-aminobutyric acid by a cell or group of cells. The gamma-aminobutyric acid is the principal inhibitory neurotransmitter in the brain but is also found in several extraneural tissues [goid 14051] [evidence ISS]; A neurological process that causes the sequential depolarization of a neuron's cell membrane along an axon [goid 19227] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 46058] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process whose specific outcome is the progression of Peyer's patches over time, from their formation to the mature structure. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes [goid 48541] [evidence ISS]; The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48747] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51925] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 51932] [evidence ISS]	Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IMP]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644832-S	ILMN_51054	RGD1564993_PREDICTED	XM_216025.4	XM_216025.4		296612	109467964	XM_216025.4	RGD1564993_predicted	XP_216025.3	ILMN_1359059	0006520435	S	985	TGGGCAGCGCCAGCACCTTTCCAGACCAGCCTGACCCATTCACCACGTAG	3	+	8483002-8483051	3p12	PREDICTED: Rattus norvegicus similar to cofactor required for Sp1 transcriptional activation subunit 8 (predicted) (RGD1564993_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649597-S	ILMN_264142	NDUFS5	NM_001030052.1	NM_001030052.1		362588	72086148	NM_001030052.1	Ndufs5	NP_001025223.1	ILMN_1357519	0007050452	S	430	AGCTGCTCTCCATGCTCTGTTTTCCGCTGGAGAGAATGTTTAAGGGAAGC	5	-	143017465-143017514	5q36	Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 5 (Ndufs5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The aggregation, arrangement and bonding together of a set of components to form mitochondrial respiratory chain complex I [goid 32981] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Ndufs5	Ndufs5
Rattus norvegicus	RefSeq	GI_62667242-S	ILMN_51864	LOC363495	XM_343818.2	XM_343818.2		363495	62667242	XM_343818.2	LOC363495	XP_343819.2	ILMN_1354940	0005360017	S	6396	GTGCCAAGAAACTTAGAGCCTTAGCAGCAGATTGTAGTGACCCAGAGGTG					PREDICTED: Rattus norvegicus similar to AI448196 protein (LOC363495), mRNA.					
Rattus norvegicus	RefSeq	GI_31088931-S	ILMN_298649	TMEM184C	NM_178330.1	NM_178330.1		291946	31088931	NM_178330.1	Tmem184c	NP_847900.1	ILMN_1356726	0002260128	S	1928	CAGACTCTCCAGAGGGTTCGGACTCATCCACAGACTCATGAAGCTGCCAC	19	+	32173674-32173714:32173715-32173723	19q11	Rattus norvegicus transmembrane protein 184C (Tmem184c), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105290	MGC105290
Rattus norvegicus	RefSeq	GI_62667486-S	ILMN_65203	LOC501651	XM_577046.1	XM_577046.1		501651	62667486	XM_577046.1	LOC501651	XP_577046.1	ILMN_1351854	0000060504	S	726	TAGAAGAGAGTGAAGACTCCCAGCTCAAAGGACCATGTGAGCAGTCCTAA					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501651), mRNA.					
Rattus norvegicus	RefSeq	GI_62657016-S	ILMN_60723	RGD1564778_PREDICTED	XM_239335.4	XM_239335.4		303514	109488956	XM_239335.4	RGD1564778_predicted	XP_239335.3	ILMN_1357010	0001580484	S	3845	TGGAGCAAAGTTCCAGGAGCGAGAGCACAGTGTGTGGAGTGTGTGGGGAA	10	+	87579621-87579670	10q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4121402D02 (predicted) (RGD1564778_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643102-S	ILMN_267804	LOC310177	XM_001063457.1	XM_001063457.1		310177	109466232	XM_001063457.1	LOC310177	XP_001063457.1	ILMN_1357316	0002680037	S	543	GCAGAGGAAGAGAGAATTCTGAGTGGAAACCCTCTCCTGAATCTCACTGG				2q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610040D20 (LOC310177), mRNA.					
Rattus norvegicus	RefSeq	GI_62641111-S	ILMN_262609	RGD1562402_PREDICTED	XM_001079874.1	XM_001079874.1		499133	109461765	XM_001079874.1	RGD1562402_predicted	XP_001079874.1	ILMN_1367901	0002510092	S	427	AAAGGGTGTGGGAGGTGCCTGTGTCCTGGTGGCTTAAAGCCACTTCAGAG				1q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L27a (predicted) (RGD1562402_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639429-S	ILMN_262609	RGD1562402_PREDICTED	XM_001079874.1	XM_001079874.1		499133	109461765	XM_001079874.1	RGD1562402_predicted	XP_001079874.1	ILMN_2039179	0004780646	S	184	TGGCATAAGGCATTACCACTTGAAGAGGAACCAGAGCTTCTGCCCAACTG				1q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L27a (predicted) (RGD1562402_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643718-S	ILMN_61417	MSR2_PREDICTED	XM_227485.3	XM_227485.3		310694	62643718	XM_227485.3	Msr2_predicted	XP_227485.3	ILMN_1355260	0005080164	S	1500	GATTGTGGGCATGACGAGGATGCTGGAGCTGTGTGTGAAGGGTGTCTCCC				2q34	PREDICTED: Rattus norvegicus macrophage scavenger receptor 2 (predicted) (Msr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11067432-S	ILMN_290876	KCNV1	NM_021697.1	NM_021697.1		60326	11067432	NM_021697.1	Kcnv1	NP_067729.1	ILMN_1367375	0001990070	S	2044	GTACCACATCTTCCATCAAGTGCAAGTCACTGGTTCCAACTGGACAGAGC	7	-	81012455-81012504	7q31	Rattus norvegicus potassium channel, subfamily V, member 1 (Kcnv1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv8.1	Kv8.1
Rattus norvegicus	RefSeq	GI_62650641-S	ILMN_69863	LOC500646	XM_580101.1	XM_580101.1		500646	62650641	XM_580101.1	LOC500646	XP_580101.1	ILMN_1350430	0006020520	S	860	TGCAGCACCACAGACACCATCAAAGCCCTCAGCAGCAGTGCAGGCCAAAG					PREDICTED: Rattus norvegicus LOC500646 (LOC500646), mRNA.					
Rattus norvegicus	RefSeq	GI_62656879-S	ILMN_51944	LOC501717	XM_580226.1	XM_580226.1		501717	62656879	XM_580226.1	LOC501717	XP_580226.1	ILMN_1352225	0000520100	S	479	GGCCAGGCTGTACCTGTCTAGTGACCTGCTTGAATGCCGTTGGCCTCTTG					PREDICTED: Rattus norvegicus LOC501717 (LOC501717), mRNA.					
Rattus norvegicus	RefSeq	GI_40363269-S	ILMN_275633	RDH2	NM_199208.1	NM_199208.1		299511	40363269	NM_199208.1	Rdh2	NP_954678.1	ILMN_1368571	0003830021	S	1840	GGATTGCAGGGGTAAGGGGAATGTCCTGAGAAGGGTGTGCATAGGCCAGC	7	+	67766911-67766960	7q22	Rattus norvegicus retinol dehydrogenase 2 (Rdh2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]	The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence IDA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence IDA]; Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	RoDHII	RoDHII
Rattus norvegicus	RefSeq	GI_8393106-S	ILMN_282739	CHKA	NM_017127.1	NM_017127.1		29194	8393106	NM_017127.1	Chka	NP_058823.1	ILMN_1356719	0002260242	S	2190	GTCTCCTAACTGGGTGTGCTTTATGCTTCAGCTTCCCGGGGAGGAGCAGT	1	+	206418185-206418234	1q42	Rattus norvegicus choline kinase alpha (Chka), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence ISS]; The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 19695] [evidence IDA]	Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence TAS]; Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence IDA]; Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence ISS]; Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence IDA]; Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium [goid 33265] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93538; CK-R; Chk	MGC93538; CK-R; Chk
Rattus norvegicus	RefSeq	GI_34858202-S	ILMN_262753	RGD1562545_PREDICTED	XM_001061198.1	XM_001061198.1		365857	109514826	XM_001061198.1	RGD1562545_predicted	XP_001061198.1	ILMN_1350389	0006290408	S	870	GAATGCTATACCAACTCTGATCCTGGCTGCCCTCCTCAGCACAGTGCACC				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1562545_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653454-S	ILMN_278984	NFRKB_PREDICTED	XM_001056399.1	XM_001056399.1		315523	109484448	XM_001056399.1	Nfrkb_predicted	XP_001056399.1	ILMN_1357970	0000070239	S	3917	AGGTCAGGCTACACAGGTACGCATCCAGACTGTGCCAGCATCCCATCTGC				8q13	PREDICTED: Rattus norvegicus nuclear factor related to kappa B binding protein (predicted) (Nfrkb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638481-S	ILMN_51703	FBXO5_PREDICTED	XM_214756.4	XM_214756.4		292263	109457719	XM_214756.4	Fbxo5_predicted	XP_214756.3	ILMN_1358828	0006510022	S	953	CCTGGGCACCTCCCAAAAATGTTCAACCCAGTCAACGTGGTCAGAGGGGT	1	-	36493264-36493313	1p11	PREDICTED: Rattus norvegicus F-box only protein 5 (predicted) (Fbxo5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978854-S	ILMN_302687	CENPI	NM_012955.1	NM_012955.1		25448	6978854	NM_012955.1	Cenpi	NP_037087.1	ILMN_1371854	0003840400	S	2877	GCAACATGTGTGACTCTTAACATCCCAAGAAGGTGATGGCTATCTGCCTG	X	+	121837364-121837413	Xq34	Rattus norvegicus centromere protein I (Cenpi), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The series of molecular signals mediated by follicle-stimulating hormone [goid 42699] [evidence IEP]		LRPR1; RNALRP	LRPR1; RNALRP
Rattus norvegicus	RefSeq	GI_62640963-S	ILMN_285496	LOC683565	XM_001066540.1	XM_001066540.1		683565	109462497	XM_001066540.1	LOC683565	XP_001066540.1	ILMN_1364595	0005890112	S	1381	AGCAGGCTCAGGACAGCTCCACCCAGCAGAGCCAAGATCACAACTATAAC					PREDICTED: Rattus norvegicus hypothetical protein LOC683565 (LOC683565), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642982	ILMN_48450	LOC294726	XM_226802.2	XM_226802.2		294726	62642982	XM_226802.2	LOC294726	XP_226802.2	ILMN_1649958	0002850528	S	881	AGGCGGCTGCGAGGATTCCAAAGGTTCTGCCGGAAATTCAGTGTTGGGGG					PREDICTED: Rattus norvegicus similar to PDE4D protein (LOC294726), mRNA.					
Rattus norvegicus	RefSeq	GI_62654559-S	ILMN_63472	LOC501079	XM_576491.1	XM_576491.1		501079	62654559	XM_576491.1	LOC501079	XP_576491.1	ILMN_1350618	0004230403	S	1995	ACTCTAGACCGCCATTGCCTTCTGGGTTTCTCTGCTACCTACGAGATTAA					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC501079), mRNA.					
Rattus norvegicus	RefSeq	GI_62658764-S	ILMN_67963	LOC360794	XM_341060.2	XM_341060.2		360794	62658764	XM_341060.2	LOC360794	XP_341061.2	ILMN_1369224	0007050463	S	97	CTCCACTTCCCGCACCTCTGCCTGGAGAAGCAGGCTCCGTAGGGATGGCT					PREDICTED: Rattus norvegicus similar to Wbscr27 protein (LOC360794), mRNA.					
Rattus norvegicus	RefSeq	GI_6981087-S	ILMN_288571	IGFBP5	NM_012817.1	NM_012817.1		25285	6981087	NM_012817.1	Igfbp5	NP_036949.1	ILMN_1369802	0002640551	S	1501	GGACCTCGGAATCTCTAGCAAGGGCTAAGGAGACACTCCCCATTCCCGAC	9	-	72003714-72003763	9q33	Rattus norvegicus insulin-like growth factor binding protein 5 (Igfbp5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell migration [goid 14912] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43569] [evidence ISS]; The increase in size or mass of a skeletal muscle. This may be due to a change in the fiber number or size [goid 48630] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IDA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]; Interacting selectively with insulin-like growth factor I [goid 31994] [evidence ISS]	IGF-BP5	IGF-BP5
Rattus norvegicus	RefSeq	GI_62718728-S	ILMN_56658	LOC501456	XM_576866.2	XM_576866.2		501456	109513876	XM_576866.2	LOC501456	XP_576866.1	ILMN_1349992	0005890685	S	319	GTACTGGCCCTGGGAAAGCTCCAAGAGTACTCCAAGGCATGAGTATCCAC	Un|NW_047948.1	+	81176-81211:84775-84788		PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501456), mRNA.					
Rattus norvegicus	RefSeq	GI_62652462-S	ILMN_288436	RGD1563224_PREDICTED	XM_001068872.1	XM_001068872.1		500874	109482275	XM_001068872.1	RGD1563224_predicted	XP_001068872.1	ILMN_2040238	0002680754	S	999	GTACTGACTTGGGGTTTGCTTTCTTACATAACCTGCACGGGATACCTATT				7q33	PREDICTED: Rattus norvegicus similar to 4930438D12Rik protein (predicted) (RGD1563224_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543494-S	ILMN_269507	PRL8A9	NM_134385.2	NM_134385.2		171406	31543494	NM_134385.2	Prl8a9	NP_599212.1	ILMN_1368270	0002940433	S	318	GTCAGAGCTGGAACATACTGCCATTCGACTCTCTCAAACTCCCCAGATGG	17	+	43881204-43881253	17p11	Rattus norvegicus prolactin family 8, subfamily a, member 9 (Prl8a9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpc2; Plpcbeta	Prlpc2; Plpcbeta
Rattus norvegicus	RefSeq	GI_13242305-S	ILMN_295562	HTR3A	NM_024394.1	NM_024394.1		79246	13242305	NM_024394.1	Htr3a	NP_077370.1	ILMN_1369856	0006840181	S	1983	AGCCCTGGTTCCTTTTCCAGTACTTCTGTGATTATGGCCCTTGGGATGGC				8q23	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 3a (Htr3a), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence TAS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5232] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]	5-HT3; Htr3; 5HT3; 5-HT3A	5-HT3; Htr3; 5HT3; 5-HT3A
Rattus norvegicus	RefSeq	GI_62660163-S	ILMN_288164	PRDM8_PREDICTED	XM_001062048.1	XM_001062048.1		305198	109500276	XM_001062048.1	Prdm8_predicted	XP_001062048.1	ILMN_1372449	0004760341	S	2136	GCCAAGTGCAACGCCTCCTTCCGCATGACCTCCGACCTAGTGTACCACAT				14p22	PREDICTED: Rattus norvegicus PR domain containing 8 (predicted) (Prdm8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718225-S	ILMN_287218	LOC690250	XM_001073844.1	XM_001073844.1		690250	109513475	XM_001073844.1	LOC690250	XP_001073844.1	ILMN_1355955	0006450280	S	829	CCATCAATGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTGCAAGAGAG	Un|NW_047883.1	-	677733-677754:678474-678501		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC690250), mRNA.					
Rattus norvegicus	RefSeq	GI_62666220-S	ILMN_63772	LOC502459	XM_577940.1	XM_577940.1		502459	62666220	XM_577940.1	LOC502459	XP_577940.1	ILMN_1352838	0001660142	S	796	GGCCATTCCCTGTGGATCTGGATGGAAATCCTGGTGGCAAGGAGCACGAG					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502459), mRNA.					
Rattus norvegicus	RefSeq	GI_18426829-S	ILMN_51038	CFH	NM_130409.1	NM_130409.1		155012	18426829	NM_130409.1	Cfh	NP_569093.1	ILMN_1357149	0001050008	S	4054	GTTGTAGGTTCTGATTCACAGTGAGTGGAAGACACACTGACTCTGACTTC				13q13	Rattus norvegicus complement component factor H (Cfh), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway [goid 6956] [evidence IEP]; Any process that modulates the frequency, rate or extent of complement activation [goid 30449] [evidence IDA]	Interacting selectively with the C3b product of the complement cascade [goid 1851] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40786448-S	ILMN_293905	FAM125A	NM_199375.1	NM_199375.1		290635	40786448	NM_199375.1	Fam125a	NP_955407.1	ILMN_1351765	0002360053	S	692	GTTCCCTTTACCCTGCACCCGAGATTTGAGGGCAAGAGCTGCGGACCCTT	16	+	18730724-18730773	16p14	Rattus norvegicus family with sequence similarity 125, member A (Fam125a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664156-S	ILMN_67617	SAP130_PREDICTED	XM_226078.4	XM_226078.4		307527	109506404	XM_226078.4	Sap130_predicted	XP_226078.4	ILMN_1370448	0002230348	S	3122	CCCAAGGCTGGAAAGTCCACCTCTGTGCTGCCCAGTTACTACAGCTGACA	18	+	24129064-24129110:24130424-24130426	18p12	PREDICTED: Rattus norvegicus Sin3A associated protein 130 (predicted) (Sap130_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647456-S	ILMN_67668	RGD1562720_PREDICTED	XM_575549.2	XM_575549.2		500197	109472172	XM_575549.2	RGD1562720_predicted	XP_575549.1	ILMN_1350688	0003780047	S	260	TCCCGCCACGAGACTCAACGGCTAAGAAGGATGATGGCAGGTTTACCACC	4	-	104097460-104097509	4q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25369 (predicted) (RGD1562720_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649419-S	ILMN_282804	RGD1559973_PREDICTED	XM_001063430.1	XM_001063430.1		362561	109476926	XM_001063430.1	RGD1559973_predicted	XP_001063430.1	ILMN_1352797	0000840324	S	757	GGACAGAGTGTGCAACAGAGGCAGCTTGACCTCCTGACGATAACCAGCCC					PREDICTED: Rattus norvegicus similar to CG31019-PA (predicted) (RGD1559973_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649417-S	ILMN_282804	RGD1559973_PREDICTED	XM_001063430.1	XM_001063430.1		362561	109476926	XM_001063430.1	RGD1559973_predicted	XP_001063430.1	ILMN_1367873	0003190601	S	372	TGATCTGTTCATTAGGCCGGACACCTGTAATCCTCGCTTCCGAGTCTGGT					PREDICTED: Rattus norvegicus similar to CG31019-PA (predicted) (RGD1559973_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718273-S	ILMN_286254	LOC290341	XR_008528.1	XR_008528.1		290341	109502645	XR_008528.1	LOC290341		ILMN_1367031	0004760520	S	2086	GCTGTTTCAAGGCAGCTAAGTGGGGCCTTGGGTGACTCCCTTGTGCTCTC					PREDICTED: Rattus norvegicus similar to CG17293-PA (LOC290341), mRNA.					
Rattus norvegicus	RefSeq	GI_62543558-S	ILMN_296796	B3GNTL1	NM_001015035.1	NM_001015035.1		367384	62543558	NM_001015035.1	B3gntl1	NP_001015035.1	ILMN_1353235	0002940039	S	1252	AAGGTGTACGAGACTGGAATGAAGTATGAGCCAGGCCTCAGCCACCAGGG	Un|NW_047838.1	+	189228-189277		Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 (B3gntl1), mRNA.			Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50511321-S	ILMN_268159	MRGPRB5	NM_001002284.1	NM_001002284.1		404644	50511321	NM_001002284.1	Mrgprb5	NP_001002284.1	ILMN_1354873	0000460142	S	672	TGTGGTTCCTTTTGTGTCCAGCCTGGCCATGTTGACCAAGATCATCTGTG	1	+	98076227-98076276	1q22	Rattus norvegicus MAS-related G protein-coupled receptor, member B5 (Mrgprb5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgB5	MrgB5
Rattus norvegicus	RefSeq	GI_62665078-S	ILMN_53169	LOC364971	XM_344740.2	XM_344740.2		364971	62665078	XM_344740.2	LOC364971	XP_344741.2	ILMN_1372776	0004070647	S	79	GGACTAGACACTCCTACAGGGGGAGACTCCCGGCCAAGTGTCTATACAGC					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC364971), mRNA.					
Rattus norvegicus	RefSeq	GI_34879386-S	ILMN_299469	RGD1560343_PREDICTED	XR_007321.1	XR_007321.1		291599	109507269	XR_007321.1	RGD1560343_predicted		ILMN_1355923	0004540717	S	254	CCACCCTCAAGAAGAGTAAACATAGGAGGAAGAAGGTTAAGTTGGCTGTG				18q11	PREDICTED: Rattus norvegicus similar to ribosomal protein S27a (predicted) (RGD1560343_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454313-S	ILMN_267320	RGSL2H	NM_198790.1	NM_198790.1		364021	38454313	NM_198790.1	Rgsl2h	NP_942085.1	ILMN_1364971	0004570341	S	871	GCCCTAAGAGGGGAGCTGTCAGGAGGATCAGACATCTTTCAGAGGTGCCC	13	-	68907769-68907818	13q21	Rattus norvegicus regulator of G-protein signaling like 2 homolog (mouse) (Rgsl2h), mRNA.					
Rattus norvegicus	RefSeq	GI_62657412	ILMN_268661	RGD1562156_PREDICTED	XM_001081653.1	XM_001081653.1		501740	109492188	XM_001081653.1	RGD1562156_predicted	XP_001081653.1	ILMN_1650552	0004200053	S	2022	CACAAATGACACAATTCCTGCTTCCAGCCCACGGTACATTCTGGGCAGCC				10q32.2	PREDICTED: Rattus norvegicus similar to MAIR-IIb (predicted) (RGD1562156_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654438	ILMN_57043	LOC367181	XM_345993.2	XM_345993.2		367181	62654438	XM_345993.2	LOC367181	XP_345994.2	ILMN_1650306	0001740079	S	2541	AGACAGCCTGGGTAATCATGGGAAACTCAACAGCCCAGCTCAGGTCCAGC				8q32	PREDICTED: Rattus norvegicus similar to cysteine sulfinic acid decarboxylase (LOC367181), mRNA.					
Rattus norvegicus	RefSeq	GI_62661458-S	ILMN_65716	ACIN1	XM_240178.4	XM_240178.4		305884	109501604	XM_240178.4	Acin1	XP_240178.3	ILMN_1360143	0002650433	S	4447	AAGGGCCGGGCTATGAAGGGAGGGATGTGGCCGGAAGTGGGAATAACCAT	15	-	32720135-32720184	15p13	PREDICTED: Rattus norvegicus apoptotic chromatin condensation inducer 1 (Acin1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The compaction of chromatin during apoptosis [goid 30263] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of monocyte differentiation [goid 45657] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665062-S	ILMN_295703	RGD1561911_PREDICTED	XR_008902.1	XR_008902.1		288898	109508699	XR_008902.1	RGD1561911_predicted		ILMN_1362864	0003120121	S	1075	CCCAGACCCCCAGAGTAACAGGAGCTTGGAAGTCTACAGTGATGATGTGG				19q11	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1561911_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948465-S	ILMN_276221	TMED3	NM_001004249.1	NM_001004249.1		300888	51948465	NM_001004249.1	Tmed3	NP_001004249.1	ILMN_1363769	0001400114	S	1003	GGCCACTATGGGAGGGCAGTGATCCAGTCTGAGGGAGAACGCCAAATACC	8	-	94590431-94590480	8q31	Rattus norvegicus transmembrane emp24 protein transport domain containing 3 (Tmed3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		MGC94283	MGC94283
Rattus norvegicus	RefSeq	Rn.98226	ILMN_276221	TMED3	NM_001004249.1	NM_001004249.1		300888	51948465	NM_001004249.1	Tmed3	NP_001004249.1	ILMN_1530343	0000780551	S	952	TATTGTGTGTGTAACATTGGCCAAAAATGTTTACGGGTCAAACTAGGGAT	8	-	94590482-94590531	8q31	Rattus norvegicus transmembrane emp24 protein transport domain containing 3 (Tmed3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		MGC94283	MGC94283
Rattus norvegicus	RefSeq	GI_62652592-S	ILMN_53756	LYPD2_PREDICTED	XM_216960.4	XM_216960.4		300017	109480883	XM_216960.4	Lypd2_predicted	XP_216960.4	ILMN_1351944	0000380497	S	330	GGCTAACCCGGCCAGTGTCCTGCTGCAATTCTGACCTATGCAACGTGGAC	7	-	112846458-112846507	7q34	PREDICTED: Rattus norvegicus Ly6/Plaur domain containing 2 (predicted) (Lypd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663649-A	ILMN_281188	TBCE	NM_001012161.1	NM_001012161.1		361255	58865893	NM_001012161.1	Tbce	NP_001012161.1	ILMN_1376610	0004760288	S	1643	CTGGTGCGCTGGTAGCAGGCCAACCGTGAGAGTTAAGGCTGGAATGTGTA	17	+	59532893-59532907:59532908-59532942	17q12.1	Rattus norvegicus tubulin folding cofactor E (Tbce), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; A process, occurring in the muscle, that is characterized by a decrease in protein content, fibre diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse [goid 14889] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence ISS]; Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells [goid 48936] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108815	MGC108815
Rattus norvegicus	RefSeq	GI_11968093-S	ILMN_286023	RPL27	NM_022514.1	NM_022514.1		64306	11968093	NM_022514.1	Rpl27	NP_071959.1	ILMN_1367235	0001450504	S	47	TGCTGGTCCTGGCTGGACGCTACTCCGGACGCAAAGCCGTCATCGTAAAG	10	+	90470110-90470159	10q32.1	Rattus norvegicus ribosomal protein L27 (Rpl27), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638921-S	ILMN_50598	ZFP128_PREDICTED	XM_218293.3	XM_218293.3		308363	62638921	XM_218293.3	Zfp128_predicted	XP_218293.3	ILMN_1361548	0000380364	S	1427	CGTGGACGTAGCCGAAGACGGGAACAACACTGTAGACCAGGCTCAAAACT					PREDICTED: Rattus norvegicus zinc finger protein 128 (predicted) (Zfp128_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659271-S	ILMN_58054	RGD1306938_PREDICTED	XM_222597.4	XM_222597.4		289007	109497819	XM_222597.4	RGD1306938_predicted	XP_222597.4	ILMN_1353959	0006590040	S	4927	ACCACATCAAAGCACACCTCGCCATCAGAAGCCACTGACCTTGGCCTACG	13	+	43117423-43117472	13q12-q13	PREDICTED: Rattus norvegicus similar to KIAA1679 protein (predicted) (RGD1306938_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645990-S	ILMN_286007	NKX2-4_PREDICTED	XM_001055558.1	XM_001055558.1		366213	109470959	XM_001055558.1	Nkx2-4_predicted	XP_001055558.1	ILMN_1374550	0003360041	S	1215	GGGTGGGAGAGGCGACAGCTCCAGACCGAATAATGTGACACCACACTTTG				3q41	PREDICTED: Rattus norvegicus NK2 transcription factor related, locus 4 (Drosophila) (predicted) (Nkx2-4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758063-S	ILMN_302657	GTF2A2	NM_053345.1	NM_053345.1		83828	16758063	NM_053345.1	Gtf2a2	NP_445797.1	ILMN_1356787	0005910129	S	135	TTCAGCATTGGCTCAGAGAGTCAGGAACAGAGTCAATTTCAGGGGCTCTC	8	+	74449180-74449222:74453745-74453751	8q24	Rattus norvegicus general transcription factor IIa 2 (Gtf2a2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12) [goid 5672] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47059200-S	ILMN_268473	NFKBIL1	NM_212509.1	NM_212509.1		361794	47059200	NM_212509.1	Nfkbil1	NP_997674.1	ILMN_1349423	0002230079	S	1143	CCGATTCTTGCAGCGATTCCGAAACCAGATTGAGACCTGGGAGCTGGGCC	20	+	3643902-3643951	20p12	Rattus norvegicus nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 (Nfkbil1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665584-S	ILMN_278722	RGD1564067_PREDICTED	XM_001075668.1	XM_001075668.1		499401	109509716	XM_001075668.1	RGD1564067_predicted	XP_001075668.1	ILMN_1370685	0007050433	S	540	GAGGCAGAGCATCCCAAAGGCTCAGAAAATAAGACAGGCACATGAGAGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700022C21 (predicted) (RGD1564067_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34864738-S	ILMN_278323	RGD1311617_PREDICTED	XM_001053599.1	XM_001053599.1		300826	109484922	XM_001053599.1	RGD1311617_predicted	XP_001053599.1	ILMN_1365142	0001990364	S	1221	GGGGGATACCGAGACTTCCTTGGATGACAGCTATGTCATAATTCGCCCTT				8q24	PREDICTED: Rattus norvegicus similar to Calphotin CG4795-PA (predicted) (RGD1311617_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656494-S	ILMN_52729	FBXO39	XM_220647.4	XM_220647.4		303287	109488493	XM_220647.4	Fbxo39	XP_220647.4	ILMN_1362961	0004780040	S	1585	CTCTCCTTTAGCCAGTTCCACACCATCACGACCAGAATTGCGAAGGCTGG	10	+	59202581-59202630	10q24	PREDICTED: Rattus norvegicus F-box protein 39 (Fbxo39), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659366-S	ILMN_64298	LOC498235	XM_579799.1	XM_579799.1		498235	62659366	XM_579799.1	LOC498235	XP_579799.1	ILMN_1364691	0006940162	S	406	ATCAGTCGAAGTGGGCATCCACCCAGGGGACATCAGCACGCACCACCAAG					PREDICTED: Rattus norvegicus LOC498235 (LOC498235), mRNA.					
Rattus norvegicus	RefSeq	GI_62654273-S	ILMN_48963	LOC501053	XM_580156.1	XM_580156.1		501053	62654273	XM_580156.1	LOC501053	XP_580156.1	ILMN_1370166	0004280632	S	332	CAGCGCCCACCGAGAGGATGTGGCTTGTGAGCTGTAAGGCGCAGAGAAAT					PREDICTED: Rattus norvegicus LOC501053 (LOC501053), mRNA.					
Rattus norvegicus	RefSeq	GI_62661848	ILMN_64396	LOC364346	XM_344369.2	XM_344369.2		364346	62661848	XM_344369.2	LOC364346	XP_344370.2	ILMN_1650544	0005390369	S	1	ATGAGCCAAGGCAAGCAAGTGAAGCAGCTTCCTTCCATCCTGAGAGTCCA				15p14	PREDICTED: Rattus norvegicus similar to TCR V alpha chain (LOC364346), mRNA.					
Rattus norvegicus	RefSeq	GI_62646665-S	ILMN_276664	PUS7_PREDICTED	XM_001061692.1	XM_001061692.1		296751	109472961	XM_001061692.1	Pus7_predicted	XP_001061692.1	ILMN_1365731	0002450170	S	2054	CTAAACACGAGCTGGCTGCGATGAGCAGTGGGTCTGAGTAGTGGGTCGCT				4q11	PREDICTED: Rattus norvegicus pseudouridylate synthase 7 homolog (S. cerevisiae) (predicted) (Pus7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741836-S	ILMN_269119	TRAP1	NM_001039001.1	NM_001039001.1		287069	84781722	NM_001039001.1	Trap1	NP_001034090.1	ILMN_1351815	0002760059	S	2039	TCTATGAGAACGCCATGATAGCAGCAGGACTCGTTGATGATCCCCGGGCC	10	+	11762374-11762423	10q12	Rattus norvegicus TNF receptor-associated protein 1 (Trap1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC95278	MGC95278
Rattus norvegicus	RefSeq	GI_62654245-S	ILMN_70217	ARMET_PREDICTED	XM_236614.4	XM_236614.4		315989	109483861	XM_236614.4	Armet_predicted	XP_236614.3	ILMN_1370585	0001690070	S	567	TGAACTCATGCCTAAATATGCCCCCAAGGCGGCCAGCGCACGGACTGATC	8	-	112110352-112110401	8q32	PREDICTED: Rattus norvegicus arginine-rich, mutated in early stage tumors (predicted) (Armet_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865533-A	ILMN_285528	COQ6	NM_001011983.1	NM_001011983.1		299195	58865533	NM_001011983.1	Coq6	NP_001011983.1	ILMN_1376546	0006760435	S	1456	AGGGCCCCTCTTCTGGGGACCATGGTGATGACAAAGAACACCTAGCCCTG	6	+	108436668-108436668:108436669-108436717	6q31	Rattus norvegicus coenzyme Q6 homolog (yeast) (Coq6), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor [goid 16709] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651055-S	ILMN_285528	COQ6	NM_001011983.1	NM_001011983.1		299195	58865533	NM_001011983.1	Coq6	NP_001011983.1	ILMN_2039545	0004050626	A	1657	CACAGAGGAGTCACCGAGATGCTGTCCCTCATTTCACTCGGTAACAATCC	6	+	108436869-108436918	6q31	Rattus norvegicus coenzyme Q6 homolog (yeast) (Coq6), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor [goid 16709] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090589-S	ILMN_302176	EMR4	NM_001007558.1	NM_001007558.1		450235	56090589	NM_001007558.1	Emr4	NP_001007559.1	ILMN_1367910	0002230600	S	1821	TCGCCAGGTGCGAATGGAGTATAAGAAGTGGTTTCATAGGCTGCAGAGAG	Un|NW_047851.1	+	2006972-2006981:2022505-2022544		Rattus norvegicus EGF-like module containing, mucin-like, hormone receptor-like sequence 4 (Emr4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650439-S	ILMN_279291	RGD1563701_PREDICTED	XM_001070724.1	XM_001070724.1		500623	109479105	XM_001070724.1	RGD1563701_predicted	XP_001070724.1	ILMN_1368154	0004610136	S	2089	CCTGAAGTCTTGGGAAACCTTGCTACCCAGAATGTAGATGCGGCTGTCTG				6q14	PREDICTED: Rattus norvegicus similar to BC068281 protein (predicted) (RGD1563701_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27545423-S	ILMN_286028	DEFA	NM_173329.1	NM_173329.1		286995	27545423	NM_173329.1	Defa	NP_775451.1	ILMN_1375228	0006420168	S	304	ACGGCTCTCTGGGGCCTGTGGTTACCGTGGCCGCATCTACAGACTGTGCT	16	-	75024502-75024551	16q12.5	Rattus norvegicus defensin, alpha 5, Paneth cell-specific (Defa), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence TAS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62657504-S	ILMN_68736	RAB40B_PREDICTED	XM_221213.4	XM_221213.4		303754	109489519	XM_221213.4	Rab40b_predicted	XP_221213.2	ILMN_1367814	0000870341	S	1524	TGCTGCCACTGCACAGATTGTGTACAACAGGTCTGTCCTATTTGGGTAGG	10	-	110590983-110591032	10q32.3	PREDICTED: Rattus norvegicus Rab40b, member RAS oncogene family (predicted) (Rab40b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758739-S	ILMN_56905	KCNJ4	NM_053870.2	NM_053870.2		116649	76881823	NM_053870.2	Kcnj4	NP_446322.2	ILMN_2040746	0005340189	S	1690	ACCGCCCCCTCCCAGTGCCTTCTGCTATGAGAACGAGTTGGCCCTCATGA	7	-	117602088-117602137	7q34	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 4 (Kcnj4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	 [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Hirk2	Hirk2
Rattus norvegicus	RefSeq	GI_62654775-S	ILMN_51741	MCM3_PREDICTED	XM_236988.4	XM_236988.4		316273	109485810	XM_236988.4	Mcm3_predicted	XP_236988.4	ILMN_1350210	0001090725	S	2275	CCAGAAAGTGGAGCTGAGTGAGTCCAGGCTGAAGGCTTTTAAGGCGGCTC	9	-	19537496-19537519:19538640-19538665	9q13	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 3 (S. cerevisiae) (predicted) (Mcm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651965-S	ILMN_272039	RGD1564742_PREDICTED	XM_578649.1	XM_578649.1		503128	62651965	XM_578649.1	RGD1564742_predicted	XP_578649.1	ILMN_1370215	0002100019	S	1374	CTGTTTTTCAAGACTTTGCTGCCTCCCTCGGGCTCCAAAGAAAAAACCCC	7	-	18728457-18728506	7q13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1564742_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649138-S	ILMN_59287	NFIB	XM_342854.3	XM_342854.3		29227	109475007	XM_342854.3	Nfib	XP_342855.2	ILMN_1368769	0004730450	S	2711	GGCTCTATGGAAGAAATGCCTCTAGGTGGGTAAAGGGTTACCTCTGCATG	5	-	101184159-101184208	5q31	PREDICTED: Rattus norvegicus nuclear factor I/B (Nfib), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence NAS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence TAS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence IEA]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IPI]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642800-I	ILMN_61777	HEXB_PREDICTED	XM_574839.1	XM_574839.1		294673	62642800	XM_574839.1	Hexb_predicted	XP_574839.1	ILMN_1375828	0004670687	S	493	TCCTGGACTGTAACACCACAGAGCCGTCAGTAGGCCCAGTTCGTTCAGCT				2q12	PREDICTED: Rattus norvegicus hexosaminidase B (predicted) (Hexb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34854127-S	ILMN_267183	TCTE3_PREDICTED	XM_001055805.1	XM_001055805.1		365153	109460865	XM_001055805.1	Tcte3_predicted	XP_001055805.1	ILMN_1367914	0002030112	S	511	ATTGTCAGCAGATGGATCTGGGATGTGGCATGGGACAGCTGGGTAGAAGC				1q12	PREDICTED: Rattus norvegicus t-complex-associated testis expressed 3 (predicted) (Tcte3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663015-S	ILMN_65453	LOC502101	XM_577541.1	XM_577541.1		502101	62663015	XM_577541.1	LOC502101	XP_577541.1	ILMN_1350556	0001990717	S	2522	CGGCCACATGGAGGCGGCAAATGAAACAAGCACAGAACCGTACCTAGAGC					PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (LOC502101), mRNA.					
Rattus norvegicus	RefSeq	GI_62645461-S	ILMN_274725	FJX1_PREDICTED	XM_001079357.1	XM_001079357.1		366140	109470392	XM_001079357.1	Fjx1_predicted	XP_001079357.1	ILMN_1354576	0002570551	S	2006	GCCCCTGGGAGCCCTACAGACCCTGACAGTTTGTCTGACCCATTCCTGAA				3q31	PREDICTED: Rattus norvegicus four jointed box 1 (Drosophila) (predicted) (Fjx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648005-S	ILMN_47823	LOC497799	XM_579394.1	XM_579394.1		497799	62648005	XM_579394.1	LOC497799	XP_579394.1	ILMN_1368067	0002680066	S	2060	GTTTTTCTCACTATAAAAATAATTGCTGATATCATTTTCAGAATTTCAGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017111 (LOC497799), mRNA.					
Rattus norvegicus	RefSeq	GI_62652204-S	ILMN_266164	RGD1305255_PREDICTED	XM_001081058.1	XM_001081058.1		299824	109482023	XM_001081058.1	RGD1305255_predicted	XP_001081058.1	ILMN_1349850	0001990458	S	2181	ACTTAACCAAAGGGATACCACGGCAGAAACTGAGTCCAAGGGGCAGCGGC				7q22	PREDICTED: Rattus norvegicus similar to CG3996-PA (predicted) (RGD1305255_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661328-S	ILMN_52735	LOC498496	XM_573758.1	XM_573758.1		498496	62661328	XM_573758.1	LOC498496	XP_573758.1	ILMN_1364172	0004920180	S	261	CAGCGACTGCTCCATATCTGTGGACCCAAGTGGAGCTCAGCCATTACCCG					PREDICTED: Rattus norvegicus similar to ribonuclease 17 (LOC498496), mRNA.					
Rattus norvegicus	RefSeq	GI_62665812-S	ILMN_67282	LOC499416	XM_574732.1	XM_574732.1		499416	62665812	XM_574732.1	LOC499416	XP_574732.1	ILMN_1352063	0006550471	S	4369	GGTTGGAAGAGAACCTGCAAACTCATGATCCAAAGGAGTCGGCCCGTGGC					PREDICTED: Rattus norvegicus similar to transient receptor potential cation channel subfamily M member 2 (LOC499416), mRNA.					
Rattus norvegicus	RefSeq	GI_47575966-S	ILMN_281069	OLR92	NM_001000140.1	NM_001000140.1		293233	47575966	NM_001000140.1	Olr92	NP_001000140.1	ILMN_1355858	0006400139	S	582	CTCCAACCACGTTGTCTACGGCCTCATGGTTATTGTAGCATCTGTGGGGA	1	-	161084434-161084483	1q32	Rattus norvegicus olfactory receptor 92 (Olr92), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr92	Olr92
Rattus norvegicus	RefSeq	GI_11693159-S	ILMN_289413	QDPR	NM_022390.1	NM_022390.1		64192	11693159	NM_022390.1	Qdpr	NP_071785.1	ILMN_1348866	0000670010	S	666	GTGGAGACCTTCCATGACTGGATCACTGGGAACAAACGGCCAAACTCAGG	14	+	70751860-70751864:70754973-70755017	14q21	Rattus norvegicus quinoid dihydropteridine reductase (Qdpr), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence IMP]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADP+ + 5,6,7,8-tetrahydropteridine = NADPH + H+ + 6,7-dihydropteridine [goid 4155] [evidence IMP]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649662-S	ILMN_63731	LOC500548	XM_575910.1	XM_575910.1		500548	62649662	XM_575910.1	LOC500548	XP_575910.1	ILMN_1360152	0000610463	S	804	CACTGAGTTGGGGATGAAGAGGCAGCTGAGGTGCTAGGAACACTTACTGC					PREDICTED: Rattus norvegicus similar to ZNF258 protein (LOC500548), mRNA.					
Rattus norvegicus	RefSeq	GI_62657939-A	ILMN_272174	HCLS1	NM_001011898.1	NM_001011898.1		288077	58865373	NM_001011898.1	Hcls1	NP_001011898.1	ILMN_1376482	0004230706	S	1580	GTCTTCTGCCTCTTTAAGAGCCTTAGGTGGAACTGCTCGAGGCAGGGGTG	11	-	65620021-65620070	11q22	Rattus norvegicus hematopoietic cell specific Lyn substrate 1 (Hcls1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 42531] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650689-S	ILMN_263147	CFL2_PREDICTED	XM_001079054.1	XM_001079054.1		366624	109479390	XM_001079054.1	Cfl2_predicted	XP_001079054.1	ILMN_1352220	0006100731	S	2542	GTCGCTGTGAGTTGTTCCAGACCTTTCTGTGGCTTTTTGGTAAGGCTGCT				6q23	PREDICTED: Rattus norvegicus cofilin 2, muscle (predicted) (Cfl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871149-S	ILMN_64111	LOC501681	XM_220266.2	XM_220266.2		501681	34871149	XM_220266.2	LOC501681	XP_220266.2	ILMN_1357152	0003060152	S	37	CGCTCTGGAAGAAGATGGGTAGCAATGTTGGAATCTACACGACCGAGGCC					PREDICTED: Rattus norvegicus similar to Hemoglobin theta-1 chain (LOC501681), mRNA.					
Rattus norvegicus	RefSeq	GI_62652310-S	ILMN_63040	RGD1564315_PREDICTED	XM_343227.3	XM_343227.3		362899	109480700	XM_343227.3	RGD1564315_predicted	XP_343228.2	ILMN_1366328	0001770397	S	1593	GCCTGGCTGCCGGAGCACGACTGTCACACAAAAATGTGCACTCGAGATTT	7	-	70022037-70022086	7q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330161F08 (predicted) (RGD1564315_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557318-S	ILMN_269875	HKR3	XM_001076033.1	XM_001076033.1		362668	109477750	XM_001076033.1	Hkr3	XP_001076033.1	ILMN_1375181	0007050671	S	1988	AGCCAGAGACTGTGTTCAGAGGAGAGCTTTGCTAGCTCCGGGGTCCTGGA				5q36	PREDICTED: Rattus norvegicus GLI-Kruppel family member HKR3, transcript variant 1 (Hkr3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665378-S	ILMN_281769	SNAI3_PREDICTED	XM_001079335.1	XM_001079335.1		307919	109509010	XM_001079335.1	Snai3_predicted	XP_001079335.1	ILMN_1358708	0005420292	S	1241	CCTTCTCCCGAATGTCTCTCTTGGTGAGGCACGAGGATGCCGGCTGCTGT				19q12	PREDICTED: Rattus norvegicus snail homolog 3 (Drosophila) (predicted) (Snai3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576920	ILMN_280568	OLR802	NM_001000977.1	NM_001000977.1		405332	47576920	NM_001000977.1	Olr802	NP_001000977.1	ILMN_1650737	0006400056	S	779	TGCAGCCCCGCTCTACAGCCTCTGCTGAGCAGGACAAGGTAGTTGTGCTA	4	-	70260851-70260900	4q23	Rattus norvegicus olfactory receptor 802 (Olr802), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr802	Olr802
Rattus norvegicus	RefSeq	GI_56799425-S	ILMN_273928	MINA	NM_153309.2	NM_153309.2		266670	56799425	NM_153309.2	Mina	NP_695221.1	ILMN_1355934	0005900139	S	1524	GGGTGGAGCTGTGGTTGGTTACAGAGAAGAGGCAGGAGAAAGAAGCTGGT	11	-	41626758-41626807	11q12	Rattus norvegicus myc induced nuclear antigen (Mina), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IMP]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]		Mina53; MGC105305	Mina53; MGC105305
Rattus norvegicus	RefSeq	GI_62647149-S	ILMN_52963	LOC500106	XM_575457.1	XM_575457.1		500106	62647149	XM_575457.1	LOC500106	XP_575457.1	ILMN_1366799	0003450403	S	210	GGGGATGTTCCAACTAAGAGACCCCCTGTTAACTCGGAAGACAAGGGTGC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC500106), mRNA.					
Rattus norvegicus	RefSeq	GI_62641346-S	ILMN_281805	RGD1566127_PREDICTED	XM_001078839.1	XM_001078839.1		499270	109462932	XM_001078839.1	RGD1566127_predicted	XP_001078839.1	ILMN_1364867	0000630138	S	648	ACAGCCTGGGGTACAGGGACCCTGCCAGGGAGATTCTGGGGGACCTGTGA				1q36	PREDICTED: Rattus norvegicus similar to BC039632 protein (predicted) (RGD1566127_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662726-S	ILMN_273034	RGD1562043_PREDICTED	XM_577519.1	XM_577519.1		502083	62662726	XM_577519.1	RGD1562043_predicted	XP_577519.1	ILMN_1353847	0006290731	S	604	GCGGGACTTGGAGACCACAGTTCATACCTGGAAAATGGAACTGCACAGCC	16	-	47627252-47627301	16q11	PREDICTED: Rattus norvegicus similar to Claudin-22 (predicted) (RGD1562043_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576248-S	ILMN_280406	OLR1311	NM_001000467.1	NM_001000467.1		300613	47576248	NM_001000467.1	Olr1311	NP_001000467.1	ILMN_1374532	0006130600	S	771	CCTGCAGCCCAACCCCAGCCCACAGCTTAGTGCAATTATTCAAATTTTGC	8	+	42518052-42518101	8q22	Rattus norvegicus olfactory receptor 1311 (Olr1311), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1311	Olr1311
Rattus norvegicus	RefSeq	GI_62718382-S	ILMN_56569	LOC503339	XM_580265.1	XM_580265.1		503339	62718382	XM_580265.1	LOC503339	XP_580265.1	ILMN_1360381	0000540008	S	984	AGACAGGTAGAAGATGCACAACTGGCCTGTGACCTCCCTGGGCACCCACT					PREDICTED: Rattus norvegicus LOC503339 (LOC503339), mRNA.					
Rattus norvegicus	RefSeq	GI_31324561	ILMN_61218	KLHL24	NM_181473.2	NM_181473.2		303803	62461584	NM_181473.2	Klhl24	NP_852138.2	ILMN_1651132	0003610050	S	1862	ATCACAGGAGTGGCTGCGATGCCCAGACCAGTGTCCTACCATGGCTGTGT	11	-	83097183-83097218:83097219-83097232	11q23	Rattus norvegicus kelch-like 24 (Drosophila) (Klhl24), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Dre1; MGC105289	Dre1; MGC105289
Rattus norvegicus	RefSeq	GI_62646704-S	ILMN_278454	RGD1563537_PREDICTED	XR_008147.1	XR_008147.1		499986	109472982	XR_008147.1	RGD1563537_predicted		ILMN_1371565	0005270270	S	58	GCGTCTGGACCAAGAGCTGATTGGAGCGTATGGACCACGGAACAAAGGTG				4q11	PREDICTED: Rattus norvegicus similar to ribosomal protein S9 (predicted) (RGD1563537_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655305-S	ILMN_56039	LOC316440	XM_237220.3	XM_237220.3		316440	62655305	XM_237220.3	LOC316440	XP_237220.3	ILMN_1363323	0002370369	S	3270	TTCGCCACCGTTACCCCAAGCAGTTCCAGTGTGCTTCCGGGGTTACCACA				9q31	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20309 (predicted) (LOC316440), mRNA.					
Rattus norvegicus	RefSeq	GI_62646000-S	ILMN_287758	CST9_PREDICTED	XM_001057664.1	XM_001057664.1		362231	109470980	XM_001057664.1	Cst9_predicted	XP_001057664.1	ILMN_1371621	0004010707	S	414	GTTCCTCTGACTGGAGTCATCCACGGTCTGGCCATGTACTTCTCTGCATC				3q41	PREDICTED: Rattus norvegicus cystatin 9 (predicted) (Cst9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663328-S	ILMN_289970	BARX1_PREDICTED	XM_001056986.1	XM_001056986.1		364680	109505559	XM_001056986.1	Barx1_predicted	XP_001056986.1	ILMN_1375144	0006860450	S	966	AGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTCTCAGCGAGCT				17p14	PREDICTED: Rattus norvegicus BarH-like homeobox 1 (predicted) (Barx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090484-S	ILMN_267168	M6PR	NM_001007700.1	NM_001007700.1		312689	56090484	NM_001007700.1	M6pr	NP_001007701.1	ILMN_1365228	0000870427	S	1856	CCCTCCTGCTGGCTCAGGGAAGTGTCTGACCCACTTATCTATGGAAAAGG	4	+	158736281-158736330	4q42	Rattus norvegicus mannose-6-phosphate receptor, cation dependent (M6pr), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of mannose into, out of, within or between cells. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 15761] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IEA]; Catalysis of the transfer of mannose from one side of the membrane to the other. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 15578] [evidence IEA]	MGC94300	MGC94300
Rattus norvegicus	RefSeq	GI_40254784-S	ILMN_270182	LAMP2	NM_017068.2	NM_017068.2		24944	40254784	NM_017068.2	Lamp2	NP_058764.2	ILMN_1358259	0004540603	S	1240	GTGCCCATAGCGGTGGGAGCAGCCCTGGGAGGAGTACTTATTCTAGTGTT	X	+	6951265-6951314	Xq11	Rattus norvegicus lysosomal-associated membrane protein 2 (Lamp2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding the platelet dense granule [goid 31088] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62641711-A	ILMN_270783	SSH3	NM_001012217.1	NM_001012217.1		365396	58866001	NM_001012217.1	Ssh3	NP_001012217.1	ILMN_1376807	0006760113	S	1983	CGGAAGGTGATAAGGCAGGCCAGTGTAGATGACAGCAGGGAGGAGGGCAA	1	-	206848676-206848725	1q42	Rattus norvegicus slingshot homolog 3 (Drosophila) (Ssh3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_46485384-S	ILMN_287493	TRPA1	NM_207608.1	NM_207608.1		312896	46485384	NM_207608.1	Trpa1	NP_997491.1	ILMN_1353498	0000460082	S	3008	AGAGGTCCACCATCGTGTATCCGAATAGACCCAGGCACGGCAGGATGCTG	5	+	3581769-3581818	5q11	Rattus norvegicus transient receptor potential cation channel, subfamily A, member 1 (Trpa1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An actin-based, cross-linked cellular protrusion on the apical surface of auditory and vestibular hair cells. Stereocilium bundles act as mechanosensory organelles by responding to fluid motion or fluid pressure changes [goid 32421] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature) [goid 50955] [evidence ISS]; The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature) [goid 50955] [evidence IEA]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]; The series of events involved in the perception of pain in which a sensory chemical stimulus is received by a cell and converted into a molecular signal [goid 50968] [evidence ISS]; The series of events involved in the perception of pain in which a sensory chemical stimulus is received by a cell and converted into a molecular signal [goid 50968] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules [goid 15267] [evidence ISS]	Anktm1	Anktm1
Rattus norvegicus	RefSeq	GI_62641101-S	ILMN_69572	OLR240_PREDICTED	XM_219206.4	XM_219206.4		293384	109459207	XM_219206.4	Olr240_predicted	XP_219206.4	ILMN_1370311	0001570722	S	458	GCTTTCTATTGTTGGGGGTGTCCTATGTTGGTGGCTGCATGAATGGTTGG	1	+	165290611-165290660	1q33	PREDICTED: Rattus norvegicus olfactory receptor 240 (predicted) (Olr240_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647464-S	ILMN_68035	MRPL35_PREDICTED	XM_216169.4	XM_216169.4		297334	109472158	XM_216169.4	Mrpl35_predicted	XP_216169.2	ILMN_1349352	0000870541	S	524	GACGACATCTTTCTGGAAGAGGCGCAACTGGTACACTGGTGATCCCTACC	4	-	105104379-105104428	4q33	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L35 (predicted) (Mrpl35_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644978-S	ILMN_58573	PSMD5_PREDICTED	XM_216041.4	XM_216041.4		296651	109468056	XM_216041.4	Psmd5_predicted	XP_216041.2	ILMN_1371379	0005570279	S	1705	TGGTGCTTGGAACATAGCGAAAGCAGCAGGAGCCTAAGAGCACTCGAGCT	3	-	13862146-13862195	3p11	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (predicted) (Psmd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655414-S	ILMN_266952	FARP2_PREDICTED	XM_001070569.1	XM_001070569.1		316639	109487528	XM_001070569.1	Farp2_predicted	XP_001070569.1	ILMN_1372109	0002760113	S	3204	CCAGGGAGACCCCCAAGTTTCACTCAGGACTGTTCACATCTTTCTCCAGG				9q36	PREDICTED: Rattus norvegicus FERM, RhoGEF and pleckstrin domain protein 2 (predicted) (Farp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641007-S	ILMN_283077	CHRDL2_PREDICTED	XM_001065914.1	XM_001065914.1		308854	109462468	XM_001065914.1	Chrdl2_predicted	XP_001065914.1	ILMN_1365289	0003440162	S	1045	AAGTGCTGCAAGACCTGCCCAGAGGATGAGGCGGATGACGAGCACAGTGA				1q32	PREDICTED: Rattus norvegicus chordin-like 2 (predicted), transcript variant 2 (Chrdl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654831-S	ILMN_54286	RGD1562188_PREDICTED	XM_576538.2	XM_576538.2		501121	109485921	XM_576538.2	RGD1562188_predicted	XP_576538.2	ILMN_1365053	0006550041	S	756	GCACGCCTGCAGGAAAGCTGGGTGGTGGGTATCTGCTTCAGTGTTGAATG	9	+	33287002-33287051	9q21	PREDICTED: Rattus norvegicus similar to CRYPTIC (predicted) (RGD1562188_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646725-S	ILMN_55535	LOC296813	XM_216078.3	XM_216078.3		296813	62646725	XM_216078.3	LOC296813	XP_216078.3	ILMN_1369665	0004610088	S	1124	CCAGAAACTGCAGCCACTTAGTACTCTTGCAGGACAAGTTTTCTGCGTGC				4q12	PREDICTED: Rattus norvegicus similar to mitochondrial carrier family protein (predicted) (LOC296813), mRNA.					
Rattus norvegicus	RefSeq	GI_27660964-S	ILMN_286621	LOC689080	XM_001069432.1	XM_001069432.1		689080	109465180	XM_001069432.1	LOC689080	XP_001069432.1	ILMN_1349683	0000360184	S	234	TGAAGTCTCTGATAACGTGGGGTGGAAGTCAATGGTGGAGTCACATCCCC	2	+	187606446-187606495	2q34	PREDICTED: Rattus norvegicus similar to TD and POZ domain-containing protein 1 (MAPP family protein 2) (LOC689080), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663927-S	ILMN_277563	NSUN6_PREDICTED	XM_001072946.1	XM_001072946.1		307148	109506199	XM_001072946.1	Nsun6_predicted	XP_001072946.1	ILMN_1349333	0004280142	S	1912	AGGGAAGGAGGAGTCGCCTGGGGTCTGGAGCACACTTTCAGCACTAACTC				17q12.3	PREDICTED: Rattus norvegicus NOL1/NOP2/Sun domain family, member 6 (predicted) (Nsun6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948383-S	ILMN_295605	PA2G4	NM_001004206.1	NM_001004206.1		288778	51948383	NM_001004206.1	Pa2g4	NP_001004206.1	ILMN_1372069	0005420128	S	1265	CCAGTGGAGAGACATTAGAGGAGAATGGAGCTGGGGACTGAGGTGGGTCC	7	-	1846887-1846896:1846897-1846936	7q11	Rattus norvegicus proliferation-associated 2G4 (Pa2g4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]	MGC94070	MGC94070
Rattus norvegicus	RefSeq	GI_62664849-S	ILMN_64847	LOC502185	XM_580240.1	XM_580240.1		502185	62664849	XM_580240.1	LOC502185	XP_580240.1	ILMN_1374450	0005390411	S	532	CTCTCAAAGGTTCAACATTCTGGGTAAGTGTTGCTACATTCACAGAAATC					PREDICTED: Rattus norvegicus LOC502185 (LOC502185), mRNA.					
Rattus norvegicus	RefSeq	GI_47576384-S	ILMN_289083	OLR1559	NM_001000049.1	NM_001000049.1		288187	47576384	NM_001000049.1	Olr1559	NP_001000049.1	ILMN_1361881	0001400279	S	386	CACTGCAGTACCACACCATGATGTCCAAGAAGCTCTCCCTTCAGATGAGT	11	+	42407401-42407450	11q12	Rattus norvegicus olfactory receptor 1559 (Olr1559), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr11-42464605-42465558_ORF; Olr1559	ratchr11-42464605-42465558_ORF; Olr1559
Rattus norvegicus	RefSeq	GI_47576118-S	ILMN_290864	OLR1392	NM_001001090.1	NM_001001090.1		405984	47576118	NM_001001090.1	Olr1392	NP_001001090.1	ILMN_1353295	0003390528	S	416	AGCGGTGTCACGCACTGGCCATCTCTTCCTGGGTAGGGGGCCTTGTGAAT	10	+	34833136-34833185	10q22	Rattus norvegicus olfactory receptor 1392 (Olr1392), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1392	Olr1392
Rattus norvegicus	RefSeq	GI_62659249-A	ILMN_275550	ACMSD	NM_134372.1	NM_134372.1		171385	19705472	NM_134372.1	Acmsd	NP_599199.1	ILMN_1376844	0001170592	S	572	GGCTCGTAGGAATGCCATCGGAGACCACCACGGCCATTTGCTCCATGATC	13	-	40556488-40556535:40558157-40558158	13q12	Rattus norvegicus aminocarboxymuconate semialdehyde decarboxylase (Acmsd), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid [goid 6568] [evidence TAS]; The chemical reactions and pathways involving nicotinamide, pyridine-3-carboxamide, the amide of nicotinic acid. It is a member of the B complex of vitamins and occurs widely in living organisms [goid 6769] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 46874] [evidence TAS]; The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 46874] [evidence ISS]	Catalysis of the reaction: 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2 [goid 1760] [evidence IDA]; Catalysis of the reaction: 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2 [goid 1760] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649062	ILMN_294540	ATP6V1G1_PREDICTED	XM_001064435.1	XM_001064435.1		298103	109476603	XM_001064435.1	Atp6v1g1_predicted	XP_001064435.1	ILMN_1650694	0003840288	S	526	GGGTTGGCATGGGATCTGTCCCCGTGGAATAGGAAACCTGCAGAGCTCGA				5q24	PREDICTED: Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit G1 (predicted) (Atp6v1g1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649794-S	ILMN_47827	RGD1561016_PREDICTED	XM_575925.2	XM_575925.2		500561	109475621	XM_575925.2	RGD1561016_predicted	XP_575925.2	ILMN_1356132	0002260735	S	1757	AGAACCGAAGCCATCCTGCCCACAGCTTGAACGCAAGGCGAAGACCTTGG	5	+	152364082-152364131	5q36	PREDICTED: Rattus norvegicus similar to BC013712 protein (predicted) (RGD1561016_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576208-S	ILMN_296875	OLR1335	NM_001000479.1	NM_001000479.1		300635	47576208	NM_001000479.1	Olr1335	NP_001000479.1	ILMN_1348813	0005910082	S	647	CCTATGTGTCCATTGTCTGCTCTATCCTGAGGATCCGTACTTCAGAGGGC	8	-	42945597-42945646	8q22	Rattus norvegicus olfactory receptor 1335 (Olr1335), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1335	Olr1335
Rattus norvegicus	RefSeq	GI_56799431-S	ILMN_276618	RDX	NM_001005889.2	NM_001005889.2		315655	56799431	NM_001005889.2	Rdx	NP_001005889.2	ILMN_1363289	0005420451	S	3700	CCACATGTGAGAGGGAGAGACGGTCAGCCTTACCACTCAGACTTTGAAGT	8	+	55449767-55449816	8q24	Rattus norvegicus radixin (Rdx), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell [goid 30033] [evidence ISS]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]	MGC95168	MGC95168
Rattus norvegicus	RefSeq	GI_62643005-S	ILMN_49675	LOC294781	XM_212926.3	XM_212926.3		294781	62643005	XM_212926.3	LOC294781	XP_212926.3	ILMN_1374151	0002230066	S	300	GAGAGCAGAGACAGCTTCCTGAAGTGGGTGAAGGACAACGATCAGTATAC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L21 (LOC294781), mRNA.					
Rattus norvegicus	RefSeq	GI_40018549-S	ILMN_283870	SPINT2	NM_199087.1	NM_199087.1		292770	40018549	NM_199087.1	Spint2	NP_954518.1	ILMN_1373649	0006450292	S	880	TCAGAGAGCCTGGGGGACACCATGACAGAGCAACGCTTGTGCCTGAGATC	1	-	84394089-84394138	1q21	Rattus norvegicus serine peptidase inhibitor, Kunitz type, 2 (Spint2), transcript variant 2, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC72638; HAI-2; Pb	MGC72638; HAI-2; Pb
Rattus norvegicus	RefSeq	GI_14010882-S	ILMN_294903	TRPV1	NM_031982.1	NM_031982.1		83810	14010882	NM_031982.1	Trpv1	NP_114188.1	ILMN_1356230	0002680487	S	2714	CGGGCCTGCTGTGGGAACTGGGAGGTGTGTGGGAATTGAGATGTGTATCC	10	+	60134806-60134855	10q24	Rattus norvegicus transient receptor potential cation channel, subfamily V, member 1 (Trpv1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence ISS]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence ISS]; The regulated release of a peptide from a cell or group of cells [goid 2790] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract [goid 14832] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence ISS]; The regression phase of the hair cycle during which cell proliferation ceases, the hair follicle shortens, and an anchored club hair is produced [goid 42637] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50954] [evidence ISS]; The series of events involved in the perception of pain in which a sensory chemical stimulus is received by a cell and converted into a molecular signal [goid 50968] [evidence ISS]; The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body [goid 60083] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Vr1; Vr1l1; VR.5'sv	Vr1; Vr1l1; VR.5'sv
Rattus norvegicus	RefSeq	GI_62659213-S	ILMN_283828	CLASP1	XM_001053715.1	XM_001053715.1		304740	109498505	XM_001053715.1	Clasp1	XP_001053715.1	ILMN_1360605	0001780341	S	5027	TGCTGCAGGGTTACGACAACACTGAGAGCAGTGTACGGAAAGCCAGCGTG					PREDICTED: Rattus norvegicus cytoplasmic linker associated protein 1 (Clasp1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IEA]; The portion of the microtubule cytoskeleton that lies just beneath the plasma membrane [goid 30981] [evidence IEA]; An amorphous structure surrounding the core of the centrosome, from which microtubules are nucleated; contains gamma-tubulin [goid 31592] [evidence IEA]	A process that results in a parallel arrangement of microtubules [goid 1578] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The cell cycle process where a cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place [goid 10458] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a kinetochore, a proteinaceous structure on a condensed chromosome, beside the centromere, to which the spindle fibers are attached [goid 43515] [evidence IEA]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662628	ILMN_66539	LOC502080	XM_577515.1	XM_577515.1		502080	62662628	XM_577515.1	LOC502080	XP_577515.1	ILMN_1649945	0005130168	S	5080	AATGCCCTGGCTCAGTACGTCATCACTGCTTGGACCACCGCCAGGCTTGG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502080), mRNA.					
Rattus norvegicus	RefSeq	GI_62658049-S	ILMN_68396	LOC363804	XM_344031.2	XM_344031.2		363804	62658049	XM_344031.2	LOC363804	XP_344032.1	ILMN_1351770	0005080452	S	57	ATCATCCGTGTGCTGTGGCTGAGAAGGCTCCAGAGAGTTATGAGTGGTGC				11q22	PREDICTED: Rattus norvegicus similar to ribosomal protein L10 (LOC363804), mRNA.					
Rattus norvegicus	RefSeq	GI_58866037-S	ILMN_277100	XKRX	NM_001012230.1	NM_001012230.1		497101	58866037	NM_001012230.1	Xkrx	NP_001012230.1	ILMN_1374698	0006400735	S	1390	CGCAGACACCATCGGGAAAGGGTTGAGAACTCAGAGACATCCTGTGAGCC	X	-	121610293-121610342	Xq34	Rattus norvegicus X Kell blood group precursor related X linked (Xkrx), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_6978872-S	ILMN_292734	GAMT	NM_012793.1	NM_012793.1		25257	6978872	NM_012793.1	Gamt	NP_036925.1	ILMN_1365830	0005570075	S	539	GGGGTATCCTCACTTACTGCAACCTCACGTCCTGGGGGGAACTCATGAAG	7	+	10961959-10962008	7q11	Rattus norvegicus guanidinoacetate N-methyltransferase (Gamt), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence IDA]; The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence ISS]; The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence TAS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence IDA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence ISS]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + guanidinoacetate = S-adenosyl-L-homocysteine + creatine [goid 30731] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + guanidinoacetate = S-adenosyl-L-homocysteine + creatine [goid 30731] [evidence NAS]; Catalysis of the reaction: S-adenosyl-L-methionine + guanidinoacetate = S-adenosyl-L-homocysteine + creatine [goid 30731] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]	GMT	GMT
Rattus norvegicus	RefSeq	GI_62643989-S	ILMN_269022	RGD1560055_PREDICTED	XR_008858.1	XR_008858.1		502555	109514268	XR_008858.1	RGD1560055_predicted		ILMN_1362360	0000060053	S	751	GCACCACACCTCCACAGCCACTCAATGGCAGCTGCTTACATGTATGACCT				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1560055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650125-S	ILMN_64534	LOC366502	XM_578510.1	XM_578510.1		366502	62650125	XM_578510.1	LOC366502	XP_578510.1	ILMN_1354757	0002760167	S	787	TGCTTTGGGGAGACCTGAGACGACCTGCACCGCTGGAAGGGAGCTATGGA				5q36	PREDICTED: Rattus norvegicus similar to ribosomal protein L14 (LOC366502), mRNA.					
Rattus norvegicus	RefSeq	GI_62644395-S	ILMN_276630	SCYE1	NM_053757.1	NM_053757.1		114632	75832034	NM_053757.1	Scye1	NP_446209.1	ILMN_1357417	0004730541	S	737	TGTGCGCCAGTTCACCAGAGAAAGTGGAGATTTTGGCCCCTCCCAACGGG	2	-	230150625-230150674	2q43	Rattus norvegicus small inducible cytokine subfamily E, member 1 (Scye1), mRNA.	A multienzyme complex found in all multicellular eukaryotes composed of eight proteins with aminoacyl-tRNA synthetase activities (abbreviated as: ArgRS, AspRS, GluProRS, GlnRS, IleRS, LeuRS, LysRS, MetRS where RS is the enzyme, preceded by the amino acid it uses as a substrate) as well as three non-synthetase proteins (p43, p38, and p18) with diverse functions. Several of these subunits are known dimers, so the total polypeptide count in the multisynthetase complex is at least fifteen. All of the enzymes in this assembly catalyze the same reaction, the covalent attachment of an amino acid to either the 2'- or 3'-hydroxyl of the 3'-terminal adenosine of tRNA, but using different substrates [goid 17101] [evidence ISS]	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence TAS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEP]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IEP]	Interacting selectively with transfer RNA [goid 49] [evidence IEA]; Interacting selectively with transfer RNA [goid 49] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]	Emap2; MGC112632	Emap2; MGC112632
Rattus norvegicus	RefSeq	GI_62657858	ILMN_58050	LOC498076	XM_573278.1	XM_573278.1		498076	62657858	XM_573278.1	LOC498076	XP_573278.1	ILMN_1650298	0000130053	S	249	GACTACCTGGCATCATCGGAGCCCAATTCTCCCACCAAAGAAAGCACAGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05 (LOC498076), mRNA.					
Rattus norvegicus	RefSeq	GI_47576294-S	ILMN_277831	OLR1280	NM_001000517.1	NM_001000517.1		315571	47576294	NM_001000517.1	Olr1280	NP_001000517.1	ILMN_1371830	0001660500	S	676	GTCAGCATCCTCCATATTCGTTCCACCAAGGGGAGGTCCAAAGCCTTCAG	8	-	41329898-41329947	8q22	Rattus norvegicus olfactory receptor 1280 (Olr1280), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090236-S	ILMN_288795	TRAM1	NM_001007701.1	NM_001007701.1		312903	56090236	NM_001007701.1	Tram1	NP_001007702.1	ILMN_1354303	0002470368	S	2546	ATTCGCTACAAGCCTCAGCCTGTGGGTAGGTTGCCATGCTGCTGGAAAGC	5	+	4868998-4869047	5q11	Rattus norvegicus translocation associated membrane protein 1 (Tram1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95042	MGC95042
Rattus norvegicus	RefSeq	GI_58865747-A	ILMN_299377	DUSP2	NM_001012089.1	NM_001012089.1		311406	58865747	NM_001012089.1	Dusp2	NP_001012089.1	ILMN_1376986	0005910100	S	1531	CCAGCCCTGTGGGCCAGGGAGGGGGCGTTGGAAACAGCACTTTATATTTA	3	+	114840687-114840736	3q36	Rattus norvegicus dual specificity phosphatase 2 (Dusp2), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase [goid 51019] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase [goid 51019] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643183-S	ILMN_58104	LOC502516	XM_578000.1	XM_578000.1		502516	62643183	XM_578000.1	LOC502516	XP_578000.1	ILMN_1374717	0001340594	S	287	TCCAGCATGGATGTACCATGGGAAGTATCCAACATGGATGTACCATGGGA					PREDICTED: Rattus norvegicus similar to vitellogenin (LOC502516), mRNA.					
Rattus norvegicus	RefSeq	GI_62659217-S	ILMN_284322	INHBB	XM_001053684.1	XM_001053684.1		25196	109498511	XM_001053684.1	Inhbb	XP_001053684.1	ILMN_1363849	0002120020	S	1635	GACGGAGGACACAGAGAGAGTGAGCCAGAGAGCCACCAAGAGGAAAAGCC				13q11	PREDICTED: Rattus norvegicus inhibin beta-B (Inhbb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus [goid 9605] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus [goid 9605] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46881] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46881] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46882] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46882] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hepatocyte growth factor [goid 48178] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hepatocyte growth factor [goid 48178] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	Rn.35074	ILMN_284322	INHBB	XM_001053684.1	XM_001053684.1		25196	109498511	XM_001053684.1	Inhbb	XP_001053684.1	ILMN_1530450	0002120184	S	1135	ACCAAGCTGAGTTCTATGTCTATGCTCTACTTTGATGACGAGTACAACAT				13q11	PREDICTED: Rattus norvegicus inhibin beta-B (Inhbb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus [goid 9605] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus [goid 9605] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46881] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46881] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46882] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46882] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hepatocyte growth factor [goid 48178] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hepatocyte growth factor [goid 48178] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661752-S	ILMN_59562	LOC498549	XM_573823.1	XM_573823.1		498549	62661752	XM_573823.1	LOC498549	XP_573823.1	ILMN_1365879	0006370019	S	6063	GCCACACCTCAGAGTGAAGCATCTGCCATCTGCGAGCCTTCGTGCTATAA				15q11	PREDICTED: Rattus norvegicus similar to A-kinase anchor protein 11 (Protein kinase A anchoring protein 11) (PRKA11) (A kinase anchor protein 220 kDa) (AKAP 220) (hAKAP220) (LOC498549), mRNA.					
Rattus norvegicus	RefSeq	GI_62650765	ILMN_296829	RGD1310311	NM_001014197.1	NM_001014197.1		362746	62079128	NM_001014197.1	RGD1310311	NP_001014219.1	ILMN_1650897	0001400286	S	881	GGGCTGTCCTGATGTTCCTCATGTGCTGTCTGGAAAACGTCTGCAATCAG	6	-	91143113-91143162	6q24	Rattus norvegicus similar to chromosome 14 open reading frame 104 (RGD1310311), mRNA.				MGC109144	MGC109144
Rattus norvegicus	RefSeq	GI_62646463-S	ILMN_63998	RAB22A_PREDICTED	XM_345479.2	XM_345479.2		366265	62646463	XM_345479.2	Rab22a_predicted	XP_345480.2	ILMN_1353287	0004850068	S	728	GTACCACTGCGTCTCGCAAGTCTCAAGTCTCCTCAGTTCAGGGCAAACAC				3q42	PREDICTED: Rattus norvegicus RAB22A, member RAS oncogene family (predicted) (Rab22a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667057-S	ILMN_64135	LOC501589	XM_576993.1	XM_576993.1		501589	62667057	XM_576993.1	LOC501589	XP_576993.1	ILMN_2039369	0005570327	S	2529	TGGAGCAGTAATGCAGCATCACCTTATTAAAATACATTTGAAGCCTTTTC					PREDICTED: Rattus norvegicus similar to Nono protein (LOC501589), mRNA.					
Rattus norvegicus	RefSeq	GI_62658524-S	ILMN_55390	LOC288514	XM_213717.3	XM_213717.3		288514	62658524	XM_213717.3	LOC288514	XP_213717.3	ILMN_1349693	0003870519	S	7491	CCTGTCTTTGGGGTCACAGGAGATACGGTGGAGAGGCTGTTCTGCCAGCA				12q11	PREDICTED: Rattus norvegicus similar to KIAA1440 protein (predicted) (LOC288514), mRNA.					
Rattus norvegicus	RefSeq	GI_8393648-S	ILMN_290155	KCNJ1	NM_017023.1	NM_017023.1		24521	8393648	NM_017023.1	Kcnj1	NP_058719.1	ILMN_1363626	0005570403	S	1907	AGAACAGGAAGCCCCAATCAACTTCATAATCAACCCAGATGCTGCAGCCC	8	+	32162225-32162274	8q21	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 1 (Kcnj1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IMP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	 [goid 5242] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15272] [evidence IDA];  [goid 15272] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IMP]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15272] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 15272] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	ROMK1; Kcnj	ROMK1; Kcnj
Rattus norvegicus	RefSeq	GI_62649052-S	ILMN_293592	RGD1564412_PREDICTED	XM_001063645.1	XM_001063645.1		500474	109476592	XM_001063645.1	RGD1564412_predicted	XP_001063645.1	ILMN_1357401	0006380750	S	466	ACTGACTTACCTACAGACACTGCCATGCTGACCCTGCTCCGCCTAGAGCC				5q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1564412_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32452541-S	ILMN_298540	CYP11B3	NM_181824.1	NM_181824.1		353498	32452541	NM_181824.1	Cyp11b3	NP_861545.1	ILMN_1371019	0001580148	S	1442	GCTTTGTTTTGATGCCCAACCCTAGACTCGTCCTCACTATCCGGCCTGTG	7	-	113013340-113013389	7q34	Rattus norvegicus cytochrome P450, subfamily 11B, polypeptide 3 (Cyp11b3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence IEA]; The process by which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume [goid 2017] [evidence IEA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IMP]; The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance [goid 32342] [evidence IEA]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of ions within an organism or cell [goid 50801] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O [goid 47783] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	CYPXIB3	CYPXIB3
Rattus norvegicus	RefSeq	GI_13928727-S	ILMN_293474	CD8B	NM_031539.1	NM_031539.1		24931	13928727	NM_031539.1	Cd8b	NP_113727.1	ILMN_1374425	0003440528	S	924	GGCAGCCTTGCAGCCACCATCTTTGTAAGTTGCTTGGTAGGGCAGCATGA	4	+	104552349-104552398	4q33	Rattus norvegicus CD8b molecule (Cd8b), mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cd8b1	Cd8b1
Rattus norvegicus	RefSeq	GI_62659490-S	ILMN_50463	NMNAT2_PREDICTED	XM_213900.4	XM_213900.4		289095	109498025	XM_213900.4	Nmnat2_predicted	XP_213900.4	ILMN_1370377	0002850215	S	513	CACGAGAACACCCAGCCCATTTACCAGAACAGCAATGTGCCCACCAAGCC	13	+	68115536-68115585	13q21	PREDICTED: Rattus norvegicus nicotinamide nucleotide adenylyltransferase 2 (predicted) (Nmnat2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659492-S	ILMN_50463	NMNAT2_PREDICTED	XM_213900.4	XM_213900.4		289095	109498025	XM_213900.4	Nmnat2_predicted	XP_213900.4	ILMN_1353771	0006760563	S	902	CATCAACCATCCCATGTCTGTAGTCAGCTCCACCAAAAGCAGGCTGGCCC	13	+	68140078-68140119:68142639-68142646	13q21	PREDICTED: Rattus norvegicus nicotinamide nucleotide adenylyltransferase 2 (predicted) (Nmnat2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655826-S	ILMN_291233	RGD1307773_PREDICTED	XM_001055264.1	XM_001055264.1		287115	109490314	XM_001055264.1	RGD1307773_predicted	XP_001055264.1	ILMN_1358266	0004780593	S	1931	CTGTTTCAGATGCCCAGCACTGCAGACCCCCATGCACAGTAACAGCAGCC				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700012G19 gene (predicted) (RGD1307773_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651753-S	ILMN_268319	RGD1562114_PREDICTED	XM_001076742.1	XM_001076742.1		500795	109481587	XM_001076742.1	RGD1562114_predicted	XP_001076742.1	ILMN_1364018	0000060731	S	596	CGCTCTGGGCACCTTCTTGCTGATTTGGGGACAATAAATGACGCAGGGGC				7q11	PREDICTED: Rattus norvegicus RGD1562114 (predicted) (RGD1562114_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34863202-S	ILMN_287646	MFRP_PREDICTED	XM_001060224.1	XM_001060224.1		315597	109484544	XM_001060224.1	Mfrp_predicted	XP_001060224.1	ILMN_1373124	0003060079	S	1594	GGACTAAGCTACAATACCACAGCCTTCCCTAACATCTGGGTGGGCCTGGC				8q22	PREDICTED: Rattus norvegicus membrane frizzled-related protein (predicted), transcript variant 1 (Mfrp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646221-S	ILMN_51148	RGD1311066_PREDICTED	XM_215901.3	XM_215901.3		296312	62646221	XM_215901.3	RGD1311066_predicted	XP_215901.2	ILMN_1373367	0006760711	S	3252	ACAGGTCACATTTGATGGAGGCAGCACCTCTGGGACAAAATGTGTCTCCC				3q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610011L14 gene (predicted) (RGD1311066_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646346-S	ILMN_273442	LOC499941	XM_001071480.1	XM_001071480.1		499941	109471289	XM_001071480.1	LOC499941	XP_001071480.1	ILMN_1361267	0003780397	S	1038	CAGCACCAAAGGGAGGGAAGGATGGTGGATGGTGTGCCTGAGAGTTAGCC				3q42	PREDICTED: Rattus norvegicus SCF apoptosis response protein 1 (LOC499941), mRNA.					
Rattus norvegicus	RefSeq	GI_40786482-S	ILMN_268452	PANX1	NM_199397.1	NM_199397.1		315435	40786482	NM_199397.1	Panx1	NP_955429.1	ILMN_1349740	0003710731	S	2362	TTTGTCCAATGAGGGCAGAACACGGAACTGACCTAGCAGTGGCCTTGGCC	8	-	11810242-11810291	8q11	Rattus norvegicus Pannexin 1 (Panx1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IMP]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32059] [evidence ISS]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 alpha from a cell or group of cells [goid 50717] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IMP]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]	px1	px1
Rattus norvegicus	RefSeq	GI_47576856-S	ILMN_263799	OLR816	NM_001000845.1	NM_001000845.1		405134	47576856	NM_001000845.1	Olr816	NP_001000845.1	ILMN_1373291	0000510397	S	883	GAGGTCAAGGGTGCCCTCAGAAGATCACTGTGGAAGGAGAGACCAATGTG	4	+	70882394-70882443	4q23	Rattus norvegicus olfactory receptor 816 (Olr816), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr816	Olr816
Rattus norvegicus	RefSeq	GI_62653080-S	ILMN_56034	POU6F1	XM_343334.3	XM_343334.3		116545	109481320	XM_343334.3	Pou6f1	XP_343335.3	ILMN_1356816	0002900022	S	2012	GGTTGAGAACCAGGAAGGCTCTGTCTTTGGGGCAGGGCCGTAGCAACTCT	7	-	139325980-139326029	7q36	PREDICTED: Rattus norvegicus POU domain, class 6, transcription factor 1 (Pou6f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666484-S	ILMN_55498	LOC367701	XM_346262.2	XM_346262.2		367701	62666484	XM_346262.2	LOC367701	XP_346263.2	ILMN_1349251	0006770035	S	18	GAAGCAGTAGCACTGCAGTCAGTTGCCCTGGAATCCCCCGTATGTACATT				Xq12	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (LOC367701), mRNA.					
Rattus norvegicus	RefSeq	GI_58865845-A	ILMN_54293	AKAP10_PREDICTED	XM_573108.2	XM_573108.2		360540	109488188	XM_573108.2	Akap10_predicted	XP_573108.1	ILMN_1376317	0000840433	S	1285	CCAGTGGGACTGTTTACCTGGCTGATATTCTCTTCTGTGAGTCAGCCCTC	10	-	48062233-48062282	10q23	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein 10 (predicted) (Akap10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665155-S	ILMN_57426	PLEKHG4_PREDICTED	XM_226402.4	XM_226402.4		307796	109508055	XM_226402.4	Plekhg4_predicted	XP_226402.4	ILMN_1365866	0000580279	S	3392	CACTAGATACTGAGGTGGACTTGGGCAGCCAGCCTTCTTTGACTCCTGAG	19	+	35196627-35196668:35196752-35196759	19q11	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family G (with RhoGef domain) member 4 (predicted) (Plekhg4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34933406-S	ILMN_263227	OATL1_PREDICTED	XM_001063148.1	XM_001063148.1		302552	109511570	XM_001063148.1	Oatl1_predicted	XP_001063148.1	ILMN_1368100	0004280184	S	1654	CTCCTGACCCTCCTGAACATGAAGTGGAACTCGTTGGACCGCCCAGCCAA				Xq13	PREDICTED: Rattus norvegicus ornithine aminotransferase-like 1 (predicted) (Oatl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643837-S	ILMN_264563	LOC499660	XM_001056859.1	XM_001056859.1		499660	109467119	XM_001056859.1	LOC499660	XP_001056859.1	ILMN_1349013	0006650397	S	908	TGAATGGCTAATCTTTCCATGGCTCAGGATTCATCTGAATGGGGGTGGGG				2q34	PREDICTED: Rattus norvegicus similar to Cornifin A (Small proline-rich protein 1A) (SPR1A) (SPRR1) (LOC499660), mRNA.					
Rattus norvegicus	RefSeq	GI_16758149-S	ILMN_296393	ILF3	NM_053412.1	NM_053412.1		84472	16758149	NM_053412.1	Ilf3	NP_445864.1	ILMN_1355275	0001230142	S	2844	GCCAGCTCCTACCAGTCCTCACAGGGTGGCTACAGTCGGAACACAGAACA	8	+	20508527-20508576	8q13	Rattus norvegicus interleukin enhancer binding factor 3 (Ilf3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [pmid 10749851] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10749851] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62658884-S	ILMN_53322	RGD1310383_PREDICTED	XM_222189.4	XM_222189.4		304488	109495913	XM_222189.4	RGD1310383_predicted	XP_222189.2	ILMN_1369617	0000450040	S	1189	CACCGTGCTCCTCTCAATAGTGGCTGAGTACACGGACTGACTGGCCACAC	12	-	35448316-35448326:35448327-35448365	12q16	PREDICTED: Rattus norvegicus similar to T-cell activation protein phosphatase 2C (predicted) (RGD1310383_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13994160-I	ILMN_297595	GRIK5	NM_031508.1	NM_031508.1		24407	13994160	NM_031508.1	Grik5	NP_113696.1	ILMN_1375534	0004230605	S	138	GTCCCACCAGGATCCGTGGCGAGTGGGGGCCGCGGCAGCTGCGTCCCCAT	1	-	80380686-80380724:80384137-80384147	1q21	Rattus norvegicus glutamate receptor, ionotropic, kainate 5 (Grik5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER [goid 6621] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31630] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31630] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IDA]; The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell [goid 51649] [evidence IMP]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA];  [goid 15277] [evidence ISS];  [goid 15277] [evidence IDA];  [goid 15277] [evidence ISS];  [goid 15277] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IMP]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	iGlu5	iGlu5
Rattus norvegicus	RefSeq	GI_62659769-S	ILMN_68398	AIM2_PREDICTED	XM_222949.3	XM_222949.3		304987	62659769	XM_222949.3	Aim2_predicted	XP_222949.3	ILMN_1350729	0005550093	S	596	CTGCCGGGACCTTATACACCTCAGAAGAAACAGATGGTGGCAGAACAGGA				13q24	PREDICTED: Rattus norvegicus absent in melanoma 2 (predicted) (Aim2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664890-S	ILMN_66816	LOC288715	XM_222246.2	XM_222246.2		288715	62664890	XM_222246.2	LOC288715	XP_222246.2	ILMN_1372146	0001780563	S	1707	CTAGAGTGGGTAAACACCCCCACCGAGGGAGCACGGCACAAAACCAGACT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930548H24 (LOC288715), mRNA.					
Rattus norvegicus	RefSeq	GI_62660489-S	ILMN_51844	RGD1563065_PREDICTED	XM_223426.4	XM_223426.4		289633	109499699	XM_223426.4	RGD1563065_predicted	XP_223426.4	ILMN_1374201	0005130731	S	578	CCGGAACGGACCCAAGAATCATCCGTGACCCAGAAGCTCAAGAGAAGCTG	14	+	47027794-47027843	14p11	PREDICTED: Rattus norvegicus similar to 3110047P20Rik protein (predicted) (RGD1563065_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663950-S	ILMN_62711	ARMC3_PREDICTED	XM_225610.3	XM_225610.3		307156	62663950	XM_225610.3	Armc3_predicted	XP_225610.3	ILMN_1370381	0004560471	S	3334	AATCAGAGCCGGCATCAGGACGAAACACGGTCCTTAGTAGAGGTGCCACC					PREDICTED: Rattus norvegicus armadillo repeat containing 3 (predicted) (Armc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644780-S	ILMN_290352	NOTCH1	XM_001078434.1	XM_001078434.1		25496	109469633	XM_001078434.1	Notch1	XP_001078434.1	ILMN_1359640	0005130097	S	7731	TTCCGTTCCCAAGCTCTGTTGGGAGTCCTTTCCAGTGCTCCAGGATGCTG				3p13	PREDICTED: Rattus norvegicus Notch gene homolog 1 (Drosophila) (Notch1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; The extension of new blood vessels from existing capillaries into avascular tissues resulting from the proliferation of blood vessel endothelial cells [goid 2040] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The activation of transcription of specific genes as a result of Notch signaling, mediated by the Notch intracellular domain [goid 7221] [evidence IMP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The regionalization process by which embryonic segments are divided into compartments that will result in differences in cell differentiation [goid 7386] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process by which the anatomical structures of the foregut are generated and organized. Morphogenesis pertains to the creation of form [goid 7440] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IDA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of keratinocyte differentiation [goid 45618] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45662] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of glia cell differentiation [goid 45687] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of photoreceptor cell differentiation [goid 46533] [evidence ISS]; The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line [goid 48103] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system [goid 48709] [evidence IEP]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence ISS]; Any process that modulates the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50767] [evidence ISS]; Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 50793] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with DNA that is assembled into chromatin [goid 31490] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654209-S	ILMN_68469	RGD1563856_PREDICTED	XM_343461.3	XM_343461.3		363126	109483898	XM_343461.3	RGD1563856_predicted	XP_343462.3	ILMN_1370367	0002360593	S	4158	CTTGGCAGTCCTTCATAGCCAAATGAAAAAGCACAGCGAAGCCCTGCCGC	8	+	109103619-109103643:109104567-109104591	8q32	PREDICTED: Rattus norvegicus similar to nephrocystin 3 (predicted) (RGD1563856_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506996-S	ILMN_292897	KLK6	NM_019175.1	NM_019175.1		29245	9506996	NM_019175.1	Klk6	NP_062048.1	ILMN_1353374	0000780025	S	830	GGGATTGTGTCATGGGGTGACATGCCCTGTGGATCAAAGGAAAAGCCGGG	1	+	94261248-94261297	1q22	Rattus norvegicus kallikrein related-peptidase 6 (Klk6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Prss9	Prss9
Rattus norvegicus	RefSeq	GI_52486746-S	ILMN_274686	TACC1	NM_001004107.1	NM_001004107.1		306562	52486746	NM_001004107.1	Tacc1	NP_001004107.1	ILMN_1368607	0002120025	S	7634	AGTGGCAGGGGGGCACACACTGCATTGACTCCTGCTGTCAGGACGGTGTT				16q12.4	Rattus norvegicus transforming, acidic coiled-coil containing protein 1 (Tacc1), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle [goid 22027] [evidence ISS]; Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton [goid 32886] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]	Tacc1a	Tacc1a
Rattus norvegicus	RefSeq	GI_62641375-S	ILMN_285659	RGD1306289_PREDICTED	XM_001080468.1	XM_001080468.1		309014	109462979	XM_001080468.1	RGD1306289_predicted	XP_001080468.1	ILMN_1367750	0004050070	S	1535	CTCCGAAGTCCCCTCAGCTTCCGTTTTGTGGATGGCGTTCTTGCCACTCT				1q37	PREDICTED: Rattus norvegicus similar to HTPAP protein (predicted) (RGD1306289_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651598-S	ILMN_49698	LOC503106	XM_578626.1	XM_578626.1		503106	62651598	XM_578626.1	LOC503106	XP_578626.1	ILMN_1350464	0005900037	S	393	CCCCTGAAAAGTGGAGTCATACATCGGAGCGATTTCCATGCTGTGGCCCA					PREDICTED: Rattus norvegicus similar to membrane-associated guanylate kinase-related (MAGI-3) (LOC503106), mRNA.					
Rattus norvegicus	RefSeq	GI_62647726-S	ILMN_57580	LOC500240	XM_575590.1	XM_575590.1		500240	62647726	XM_575590.1	LOC500240	XP_575590.1	ILMN_1362047	0000110075	S	537	GAGCCCTTCCCAGTTCCCCAGCAGGCAGAGCTAGTAGATGAGAATGACAC					PREDICTED: Rattus norvegicus similar to katanin p80 subunit B 1 (LOC500240), mRNA.					
Rattus norvegicus	RefSeq	GI_62642319-S	ILMN_58464	CUTC_PREDICTED	XM_342052.3	XM_342052.3		361760	109460123	XM_342052.3	Cutc_predicted	XP_342053.2	ILMN_1357611	0002690131	S	962	GGATCGACAATCTCTATGACAGCACCAACCTTCCACATGGCCGTGGGTGT	1	-	247062549-247062598	1q54	PREDICTED: Rattus norvegicus cutC copper transporter homolog (E.coli) (predicted) (Cutc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577370	ILMN_297795	OLR439	NM_001000281.1	NM_001000281.1		295710	47577370	NM_001000281.1	Olr439	NP_001000281.1	ILMN_1650021	0002810647	S	533	TCTGTGATGTACCACCGATTCTCGCCCTCTCTTGCTCTAGCATTGATCTC	3	-	68608899-68608948	3q24	Rattus norvegicus olfactory receptor 439 (Olr439), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr439	Olr439
Rattus norvegicus	RefSeq	GI_47577474-S	ILMN_263154	OLR687	NM_001000356.1	NM_001000356.1		295892	47577474	NM_001000356.1	Olr687	NP_001000356.1	ILMN_1363015	0002350358	S	407	CCCGGAGGCTCTGTGGTATTTTAGTGCTGTTGTCCTGGGCTGGAGGCTTC	3	-	73541491-73541540	3q24	Rattus norvegicus olfactory receptor 687 (Olr687), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr687	Olr687
Rattus norvegicus	RefSeq	GI_56676347-S	ILMN_300329	HAPLN3	NM_001008559.1	NM_001008559.1		308773	56676347	NM_001008559.1	Hapln3	NP_001008559.1	ILMN_1374455	0001850332	S	1067	ACCTGAACCTGGAGTACGAACCTTTGGCTTCCCAGACCCCAACACCCGCT	1	-	134852051-134852100	1q31	Rattus norvegicus hyaluronan and proteoglycan link protein 3 (Hapln3), mRNA.		The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658229-S	ILMN_296590	HIC2_PREDICTED	XM_001066805.1	XM_001066805.1		287940	109494765	XM_001066805.1	Hic2_predicted	XP_001066805.1	ILMN_1348919	0004010008	S	2123	CTGCAGACTTGCCGCTTGGGAACCCACGGAAGCATAGTGGGAGGGTTGAG				11q23	PREDICTED: Rattus norvegicus hypermethylated in cancer 2 (predicted) (Hic2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650824-S	ILMN_274755	SIX1	XM_001080688.1	XM_001080688.1		114634	109479517	XM_001080688.1	Six1	XP_001080688.1	ILMN_1365346	0002320487	S	2346	CCTACCTGTAGGCTGCCTCTGTCTACTCCTAGTTTCTACGTGACAGAGGG				6q24	PREDICTED: Rattus norvegicus sine oculis homeobox homolog 1 (Drosophila) (Six1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence IEA]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IEA]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence IEA]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence ISS]; The orderly movement of myoblasts from one site to another, often during the development of a multicellular organism. A myoblast is a cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 51451] [evidence IEA]; The orderly movement of myoblasts from one site to another, often during the development of a multicellular organism. A myoblast is a cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 51451] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666172-S	ILMN_61652	LOC502436	XM_577917.1	XM_577917.1		502436	62666172	XM_577917.1	LOC502436	XP_577917.1	ILMN_1372344	0002120324	S	587	CCTGTTACCGATGGCTGCTGCAGGAGATCTGGATGGAAATTCTCGTGGCA					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502436), mRNA.					
Rattus norvegicus	RefSeq	GI_57113778-S	ILMN_267018	V1RE1	NM_001008905.1	NM_001008905.1		494258	57113778	NM_001008905.1	V1re1	NP_001008905.1	ILMN_1365672	0006400092	S	255	GTATGTTCGAAGAGTTTCCAGGAATATGTCCATCAGCACCACCTGCCTCT	1	+	57764443-57764492	1q12	Rattus norvegicus vomeronasal 1 receptor, E1 (V1re1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655945-S	ILMN_264319	FOXI1_PREDICTED	XM_001065917.1	XM_001065917.1		287185	109490500	XM_001065917.1	Foxi1_predicted	XP_001065917.1	ILMN_1351605	0004200324	S	1072	CACCAATGCTCTGGGCTATGGAGGCCCTGTCTTCAACCAGTTCAGTCCAC				10q12	PREDICTED: Rattus norvegicus forkhead box I1 (predicted) (Foxi1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657364-S	ILMN_275088	LOC688269	XM_001081709.1	XM_001081709.1		688269	109492259	XM_001081709.1	LOC688269	XP_001081709.1	ILMN_1349001	0006520239	S	1857	GAGTCGCCTGGACAGCCATTTTTCAGGGCTCTTCAACTACAGGCTCAAGC					PREDICTED: Rattus norvegicus similar to Tripartite motif protein 47 (LOC688269), mRNA.					
Rattus norvegicus	RefSeq	GI_62654126-S	ILMN_64543	LOC503223	XM_578748.1	XM_578748.1		503223	62654126	XM_578748.1	LOC503223	XP_578748.1	ILMN_1371281	0003360603	S	716	TGCTACGCCCAGTGCGGGAAGGAAAATTAACGAGACCCCAGCGGGACACT					PREDICTED: Rattus norvegicus similar to OTTMUSP00000000438 (LOC503223), mRNA.					
Rattus norvegicus	RefSeq	GI_62078526-S	ILMN_278179	PRKD2	NM_001013895.1	NM_001013895.1		292658	62078526	NM_001013895.1	Prkd2	NP_001013917.1	ILMN_1357889	0006370452	S	2983	GGAGTGATAAGGCTGGAGAGTTGGTTCTGTGGGTAAAGGCGCTTGCCACC	1	+	77197116-77197165	1q21	Rattus norvegicus protein kinase D2 (Prkd2), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1308054	RGD1308054
Rattus norvegicus	RefSeq	GI_62658146-S	ILMN_289456	RGD1563956_PREDICTED	XM_001058897.1	XM_001058897.1		303815	109494665	XM_001058897.1	RGD1563956_predicted	XP_001058897.1	ILMN_1354735	0006400102	S	112	ACACCAGCCACCTCCGCCATGCCGCCCAACGAGATCAAAGTCGTGTACTT				11q23	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (predicted) (RGD1563956_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644468-S	ILMN_278611	LOC310902	XR_009220.1	XR_009220.1		310902	109467717	XR_009220.1	LOC310902		ILMN_1358555	0003130020	S	1115	GGGAAAATGCATCCGCTGCGTCCTCTCTATGAGACCCTGATGGTGGCTGG				2q44	PREDICTED: Rattus norvegicus similar to Alcohol dehydrogenase 1A (Alcohol dehydrogenase alpha subunit) (LOC310902), mRNA.					
Rattus norvegicus	RefSeq	GI_19705468-S	ILMN_281473	PSD	XM_001070141.1	XM_001070141.1		171381	109460177	XM_001070141.1	Psd	XP_001070141.1	ILMN_2040891	0003450468	S	2987	AAGAAGGCCCGAGGCAAGGAGGCTGAGGAGCAGAGGCAGAAGGAGACCTA	1	-	251529541-251529590	1q54	PREDICTED: Rattus norvegicus pleckstrin and Sec7 domain containing, transcript variant 2 (Psd), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The directed movement of guanine, 2-amino-6-hydroxypurine, into, out of, within or between cells [goid 15854] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Catalysis of the transfer of guanine nucleotides (GMP, GDP, and GTP) from one side of the membrane to the other [goid 1409] [evidence TAS]; Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645660-A	ILMN_294525	LCMT2	NM_001011956.1	NM_001011956.1		296098	58865489	NM_001011956.1	Lcmt2	NP_001011956.1	ILMN_1376591	0001660619	S	1910	CTACAGGGTTGAGCTCCGAGTATCAGATTGACACCGCGTCTGTGCCATGG	3	-	107929609-107929658	3q35	Rattus norvegicus leucine carboxyl methyltransferase 2 (Lcmt2), mRNA.		The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658179-S	ILMN_54559	LOC363827	XM_573320.1	XM_573320.1		363827	62658179	XM_573320.1	LOC363827	XP_573320.1	ILMN_1359347	0004540082	S	1716	CCCTCCACTGTGGTATCACTAACTCTCCATAGTGCTAAGTGCATCTGCAA				11q23	PREDICTED: Rattus norvegicus similar to productively rearranged V-lambda-2 (LOC363827), mRNA.					
Rattus norvegicus	RefSeq	GI_51036675-S	ILMN_279964	UBXN11	NM_138853.2	NM_138853.2		192207	51036675	NM_138853.2	Ubxn11	NP_620208.1	ILMN_1353559	0000430605	S	1359	AGCTGCCTTTGAAATCTTGAGCACCTTCCCACCCACAGTCTACCGGGATG	5	+	152876529-152876578	5q36	Rattus norvegicus UBX domain protein 11 (Ubxn11), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]			Soc	Soc
Rattus norvegicus	RefSeq	GI_62642249-S	ILMN_270588	CYP2C65_PREDICTED	XM_219933.3	XM_219933.3		293985	62642249	XM_219933.3	Cyp2c65_predicted	XP_219933.2	ILMN_1353323	0002340092	S	439	GGATGGGGAAGAGAAGCATTGAAGACCGAGTTCAAGAGGAGGCTCGCTGT	1	-	244478930-244478979	1q53	PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 65 (predicted) (Cyp2c65_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465556-S	ILMN_277657	CIPAR1	NM_173114.1	NM_173114.1		286894	27465556	NM_173114.1	Cipar1	NP_775137.1	ILMN_1368730	0005860019	S	788	AGAGCCTGTGCCCAAGGAGAAATCACCCCAAGACACTGAGCCTGGCAAAG	14	-	18046102-18046151	14p22	Rattus norvegicus castration induced prostatic apoptosis-related protein 1 (Cipar1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence NAS]		CIPAR-1; PARM-1	CIPAR-1; PARM-1
Rattus norvegicus	RefSeq	GI_62661171-S	ILMN_269937	LOC686141	XM_573722.1	XM_573722.1		686141	62661171	XM_573722.1	LOC686141	XP_573722.2	ILMN_1361112	0004280538	S	895	GGGAGCAAAGATTGACAACTCCTCCCACATCTCAGTCCTTGTAACCGTTC	15	+	19552738-19552787	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC686141), mRNA.					
Rattus norvegicus	RefSeq	GI_62661205-S	ILMN_269937	LOC686141	XM_573722.1	XM_573722.1		686141	62661171	XM_573722.1	LOC686141	XP_573722.2	ILMN_1372494	0004670519	S	1083	TTACCTGCCGTTCTGCTGTGTTTCCAAGGCCAGCAACAGGCTGGAGTTAT	15	+	19552926-19552975	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC686141), mRNA.					
Rattus norvegicus	RefSeq	GI_47577516-S	ILMN_297639	OLR677	NM_001001062.1	NM_001001062.1		405950	47577516	NM_001001062.1	Olr677	NP_001001062.1	ILMN_1350703	0001990138	S	387	TCACTACTCGGCCATCATGACCTGGAGACTCTGTGGTGTTTTGGTGGGGG	3	-	73406291-73406340	3q24	Rattus norvegicus olfactory receptor 677 (Olr677), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr677	Olr677
Rattus norvegicus	RefSeq	GI_62666258-S	ILMN_65545	LOC502476	XM_577956.1	XM_577956.1		502476	62666258	XM_577956.1	LOC502476	XP_577956.1	ILMN_1362971	0004590725	S	471	GTCTGCCACTGGGAAGTTGATGTGGAGAAAGGGGAGGAATGGGCTCTACG					PREDICTED: Rattus norvegicus similar to ret finger protein-like 4 (LOC502476), mRNA.					
Rattus norvegicus	RefSeq	GI_62655577-S	ILMN_59907	RGD1305823	XM_340737.3	XM_340737.3		360461	109487669	XM_340737.3	RGD1305823	XP_340738.1	ILMN_1351741	0004760692	S	1285	GGGGAGGCAATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCGTGGGGAG	10	+	658096-658145	10q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610037P05 (RGD1305823), mRNA.					
Rattus norvegicus	RefSeq	GI_34878474-S	ILMN_273027	LRPAP1	XM_001058156.1	XM_001058156.1		116565	109500751	XM_001058156.1	Lrpap1	XP_001058156.1	ILMN_1369193	0000840092	S	2529	GTGCATCTTCACCAATGTGTGCGTCCCTAGAGCCAGAGGCCATGACTGCA				14q21	PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein associated protein 1 (Lrpap1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; The volume enclosed by the membranes of the rough endoplasmic reticulum [goid 48237] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660846-S	ILMN_58422	SPRED2_PREDICTED	XM_223647.3	XM_223647.3		305539	62660846	XM_223647.3	Spred2_predicted	XP_223647.3	ILMN_1371095	0005550164	S	2748	GAACCGTAGCCATTCCCAGCCCCCTACACTGTTTTACATTATTCAGGGGG				14q22	PREDICTED: Rattus norvegicus sprouty-related, EVH1 domain containing 2 (predicted) (Spred2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641222-S	ILMN_52606	LOC361639	XM_341918.2	XM_341918.2		361639	62641222	XM_341918.2	LOC361639	XP_341919.1	ILMN_1373086	0002970471	S	988	GGAGCCTTTGGCACCACAGTGGATTGCCGTGGCATTACTGCACCAAGAAG					PREDICTED: Rattus norvegicus similar to CG14182-PA (predicted) (LOC361639), mRNA.					
Rattus norvegicus	RefSeq	GI_62651531-S	ILMN_68544	LOC503085	XM_578605.1	XM_578605.1		503085	62651531	XM_578605.1	LOC503085	XP_578605.1	ILMN_1360799	0000450372	S	380	CCACACGTTGATATCTGAGGACTCTGGGGATTGTATGCATTGTGAGGTGC				6q33	PREDICTED: Rattus norvegicus similar to anti-poly(dC) monoclonal antibody heavy chain (LOC503085), mRNA.					
Rattus norvegicus	RefSeq	GI_62659607-S	ILMN_59040	KIFAP3_PREDICTED	XM_213920.4	XM_213920.4		289168	109498093	XM_213920.4	Kifap3_predicted	XP_213920.3	ILMN_1360564	0002510041	S	2453	TCCTGGCAGCCTTGGAATGGATGGCTTTGGTCAGCCAGTGGGAATCCTCG	13	+	79646219-79646227:79672436-79672476	13q22	PREDICTED: Rattus norvegicus kinesin-associated protein 3 (predicted) (Kifap3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653500-S	ILMN_284447	RGD1306811_PREDICTED	XR_007886.1	XR_007886.1		300517	109484510	XR_007886.1	RGD1306811_predicted		ILMN_1368252	0003940047	S	1679	CCCGGTTGCATGTGCGCTGGGTTTACTGGCTGTGTTCTCTGACTGTGTTC				8q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25530 (predicted) (RGD1306811_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662035-S	ILMN_272711	CLDN10_PREDICTED	XM_001074876.1	XM_001074876.1		290485	109502847	XM_001074876.1	Cldn10_predicted	XP_001074876.1	ILMN_1358030	0006770471	S	625	GGACCCACGTCAGTCATGTCTTCCCGGACCAAGTATCAAGGCGGAGAAGG				15q24	PREDICTED: Rattus norvegicus claudin 10 (predicted) (Cldn10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718838-S	ILMN_65848	LOC501493	XM_236855.3	XM_236855.3		501493	62718838	XM_236855.3	LOC501493	XP_236855.3	ILMN_1370928	0000130372	S	39	TCAGTTCCCTTTGGGTTCACAAGCAGGCATGTTTCACCAGCTGCTCAGGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC501493), mRNA.					
Rattus norvegicus	RefSeq	GI_11693165-S	ILMN_299819	PMPCB	NM_022395.1	NM_022395.1		64198	11693165	NM_022395.1	Pmpcb	NP_071790.1	ILMN_1365519	0000430524	S	1199	GAGTGAGGTCGCACGCGCCAAAAACCTTCTCAAGACAAACATGCTGCTGC	4	-	8747515-8747564	4q11	Rattus norvegicus peptidase (mitochondrial processing) beta (Pmpcb), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The cleavage of proteins, usually near the N terminus, during the process of import into the mitochondrion; several different peptidases mediate cleavage of proteins destined for different mitochondrial compartments [goid 6627] [evidence TAS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Mppb	Mppb
Rattus norvegicus	RefSeq	GI_62644892-S	ILMN_54262	RGD1307355	XM_231122.4	XM_231122.4		311825	109467941	XM_231122.4	RGD1307355	XP_231122.4	ILMN_1364714	0001090600	S	2317	ACTTCAGGCATTGGAAGCAGCTACACATCCTAGCCCCCAGGAGGATCAGC	3	+	5849182-5849231	3p12	PREDICTED: Rattus norvegicus similar to gene model 711 (RGD1307355), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506870-S	ILMN_296935	MADCAM1	NM_019317.1	NM_019317.1		54266	9506870	NM_019317.1	Madcam1	NP_062190.1	ILMN_1351481	0004590273	S	1085	TGGATTGGCAGCTTGGTGCTGGGGCTGCTTGCACTCGCCTTCCTTGCCTA	7	-	11553363-11553412	7q11	Rattus norvegicus mucosal vascular addressin cell adhesion molecule 1 (Madcam1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666357-S	ILMN_47867	LOC365606	XM_345125.2	XM_345125.2		365606	62666357	XM_345125.2	LOC365606	XP_345126.2	ILMN_1350066	0002640537	S	433	GCCCTGATGTGAGGATGCAGGTGTGCCCTGATGTGAGGATGCAGTATCAG					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG14893 (LOC365606), mRNA.					
Rattus norvegicus	RefSeq	GI_62661878-S	ILMN_65967	LOC290177	XM_224138.3	XM_224138.3		290177	62661878	XM_224138.3	LOC290177	XP_224138.3	ILMN_1369302	0006350494	S	481	CAAACTGCAGCAACAGCCAGAAGATCAAGCCATGGGTGAGTGGCCAGCAG					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 6 (LOC290177), mRNA.					
Rattus norvegicus	RefSeq	GI_62652660-S	ILMN_286834	VPS28_PREDICTED	XM_216962.2	XM_216962.2		300052	62652660	XM_216962.2	Vps28_predicted	XP_216962.1	ILMN_1369857	0002190288	S	622	CAGCCAGACCTGCGGGAGCTAATGGAGACCATGCACAGAATGAGCCACCT	7	-	114670875-114670924	7q34	PREDICTED: Rattus norvegicus vacuolar protein sorting 28 (yeast) (predicted) (Vps28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408291-A	ILMN_284248	PGR	NM_022847.1	NM_022847.1		25154	12408291	NM_022847.1	Pgr	NP_074038.1	ILMN_1376977	0004780563	S	2704	GTTATTGCTGCCCAGTTGCCCAAGATCCTGGCGGGCATGGTGAAGCCTCT	8	+	5845541-5845590	8q11	Rattus norvegicus progesterone receptor (Pgr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence ISS]; The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2070] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IDA]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence ISS]; Any series of molecular signals generated as a consequence of a progesterone binding to its receptor [goid 50847] [evidence ISS]	Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IDA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IMP]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IMP]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IDA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647123-S	ILMN_268759	PRSS3_PREDICTED	XM_001068100.1	XM_001068100.1		362347	109473333	XM_001068100.1	Prss3_predicted	XP_001068100.1	ILMN_1355715	0002760131	S	167	CCCTCATCAACGACCAGTGGGTGGTGTCTGCAGCTCACTGTTACAAGACC				4q22	PREDICTED: Rattus norvegicus protease, serine, 3 (mesotrypsin) (predicted) (Prss3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675849-S	ILMN_298991	NFIL3	NM_053727.2	NM_053727.2		114519	48675849	NM_053727.2	Nfil3	NP_446179.2	ILMN_1360188	0001240538	S	1809	CGCTGAAGACTTGATGCCCTCACTCTGCCTGGCGTGTAGTCAGATAGCCC	17	+	18107556-18107605	17p14	Rattus norvegicus nuclear factor, interleukin 3 regulated (Nfil3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	E4BP4	E4BP4
Rattus norvegicus	RefSeq	GI_62664385-S	ILMN_48320	AP3S1_PREDICTED	XM_217560.4	XM_217560.4		302290	109506579	XM_217560.4	Ap3s1_predicted	XP_217560.1	ILMN_1368173	0001170369	S	701	GGCCACTCCCAGGTAAAACCCAGAGGGAAAGTCATCTAAGTTTACCATGC	18	+	41015828-41015877	18q11	PREDICTED: Rattus norvegicus adaptor-related protein complex 3, sigma 1 subunit (predicted) (Ap3s1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653781-S	ILMN_268796	KIF23_PREDICTED	XM_001073723.1	XM_001073723.1		315740	109484810	XM_001073723.1	Kif23_predicted	XP_001073723.1	ILMN_1357437	0002810017	S	2978	GCACCACGCACAACCCAAGCGCAAGAAACCTTGAACTGACAACCCTGGTG				8q24	PREDICTED: Rattus norvegicus kinesin family member 23 (predicted) (Kif23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675868-S	ILMN_296759	RAB7A	NM_023950.3	NM_023950.3		29448	48675868	NM_023950.3	Rab7a	NP_076440.1	ILMN_1374078	0000870672	S	1763	TGTCCTACTCAAAGAGGAAAGGAGAACCCCACCAGACCTGTCCCAGTCAG	4	-	122202802-122202851	4q34	Rattus norvegicus RAB7A, member RAS oncogene family (Rab7a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence TAS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652938	ILMN_268458	RABL2B	NM_001013221.1	NM_001013221.1		362987	61557321	NM_001013221.1	Rabl2b	NP_001013239.1	ILMN_1650357	0001090487	S	949	GAAGAGGATACACCAGACCAAGAGCAGGGTGACATGAGCAAGAGCCCATC	7	-	127900057-127900106	7q34	Rattus norvegicus RAB, member of RAS oncogene family-like 2B (Rabl2b), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47606386-S	ILMN_265386	OLR130	NM_001001272.1	NM_001001272.1		293268	47606386	NM_001001272.1	Olr130	NP_001001272.1	ILMN_1353447	0002260541	S	858	CCCCATCATTTATAGCATCAAGACCAAGCAGATTCAGAGGAGCATTCTCC	1	-	161687021-161687070	1q32	Rattus norvegicus olfactory receptor 130 (Olr130), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161769218-161768295_ORF; Olr130	ratchr1-161769218-161768295_ORF; Olr130
Rattus norvegicus	RefSeq	GI_62667329-S	ILMN_277968	MID2_PREDICTED	XM_001053301.1	XM_001053301.1		363502	109469956	XM_001053301.1	Mid2_predicted	XP_001053301.1	ILMN_1358590	0006650056	S	2322	GGTGGATGTGCCCCCACAGTTGAAGCGTCTAGGCGTCCTCTTGGATTATG				Xq35	PREDICTED: Rattus norvegicus midline 2 (predicted) (Mid2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661712-S	ILMN_57155	EPB4.9_PREDICTED	XM_341352.3	XM_341352.3		361069	109501733	XM_341352.3	Epb4.9_predicted	XP_341353.3	ILMN_1371527	0001990095	S	1296	GACCGGACACCCTTCCATACCTCCTTGCATTCGGGAACGTCTAAGTCCTC	15	-	51006820-51006848:51013328-51013348	15p11	PREDICTED: Rattus norvegicus erythrocyte protein band 4.9 (predicted) (Epb4.9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649133-S	ILMN_273107	RGD1308059	NM_001025022.1	NM_001025022.1		362535	68163482	NM_001025022.1	RGD1308059	NP_001020193.1	ILMN_1370869	0003520438	S	717	AGGACTCTCAAGCTCTGCACAAGCATCCCAAGCTGGATTCTGAGTACTAC	5	+	99646611-99646660	5q31	Rattus norvegicus similar to DNA segment, Chr 4, Brigham & Womens Genetics 0951 expressed (RGD1308059), mRNA.				MGC109234	MGC109234
Rattus norvegicus	RefSeq	GI_6981465-S	ILMN_52332	RBP2	NM_012640.2	NM_012640.2		24710	78126162	NM_012640.2	Rbp2	NP_036772.2	ILMN_1365288	0003450563	S	249	TCACAGTGGGGGTGGAGTTTGACGAACACACAAAGGGTCTGGATGGCCGG	8	+	103674100-103674149	8q31	Rattus norvegicus retinol binding protein 2, cellular (Rbp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina [goid 16918] [evidence IEA]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence TAS]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12018277-S	ILMN_270765	ILKAP	NM_022606.1	NM_022606.1		64538	12018277	NM_022606.1	Ilkap	NP_072128.1	ILMN_1359049	0001580711	S	1071	GTCCTGCCTTGAGGATGAGAAGATCCAGACCCGAGAAGGGAAGCCTGCTG	9	-	90603147-90603183:90603418-90603430	9q36	Rattus norvegicus integrin-linked kinase-associated serine/threonine phosphatase 2C (Ilkap), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the mitotic cell cycle [goid 7090] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IDA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IDA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662553-S	ILMN_57968	LOC364549	XM_577506.1	XM_577506.1		364549	62662553	XM_577506.1	LOC364549	XP_577506.1	ILMN_1368801	0003060647	S	362	CAAATATGGCTCTAAGGACAACTGGAGGGGGGTGGTCCTAGCCCAGGTGC				16p13	PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC364549), mRNA.					
Rattus norvegicus	RefSeq	GI_62652005-S	ILMN_47743	ACTR6_PREDICTED	XM_235051.4	XM_235051.4		314718	109480430	XM_235051.4	Actr6_predicted	XP_235051.4	ILMN_1367096	0000730494	S	1097	CTGTCGTGTTGCCTGAGAACCCTATCACTTACTCCTGGGAAGGTGGGAAA	7	-	26517036-26517067:26519115-26519132	7q13	PREDICTED: Rattus norvegicus ARP6 actin-related protein 6 homolog (yeast) (predicted) (Actr6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660668-S	ILMN_275104	RGD1305719_PREDICTED	XM_001060523.1	XM_001060523.1		289727	109500777	XM_001060523.1	RGD1305719_predicted	XP_001060523.1	ILMN_1358664	0004480091	S	2643	ATACACACTCTCCTGTGTGGGGCTTGGGGTGAGGAGTGGCAGGCTAGGTA				14q21	PREDICTED: Rattus norvegicus similar to putative N-acetyltransferase Camello 2 (predicted) (RGD1305719_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658889-S	ILMN_53590	LOC304484	XM_222186.3	XM_222186.3		304484	62658889	XM_222186.3	LOC304484	XP_222186.3	ILMN_1369786	0005690040	S	1936	GCCGCCTGTGTTTGGGGCAGACTCCTTCAGTGACAAAGTTGAAGAGGTGG				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein 4921511C16 (LOC304484), mRNA.					
Rattus norvegicus	RefSeq	GI_62641633-S	ILMN_50342	RGD1562983_PREDICTED	XM_574587.2	XM_574587.2		499288	109459635	XM_574587.2	RGD1562983_predicted	XP_574587.2	ILMN_1366200	0006110603	S	1407	TGGGATGACCCAGGAAGGCCCACACCTGCTGCTTGCTCCTATTACCCCTT	1	-	202138779-202138828	1q41	PREDICTED: Rattus norvegicus similar to ovary-specific MOB-like protein (predicted) (RGD1562983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656573-S	ILMN_56774	PHF12	XM_220644.4	XM_220644.4		303274	109488569	XM_220644.4	Phf12	XP_220644.4	ILMN_1354421	0001980288	S	3831	CTCAACATTTCATGGGAAAGCGGCAGATCGAGCTGAGGACCAGCATGGGC	10	+	64073763-64073812	10q25	PREDICTED: Rattus norvegicus PHD finger protein 12 (Phf12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577610-S	ILMN_266783	OLR658	NM_001000344.1	NM_001000344.1		295864	47577610	NM_001000344.1	Olr658	NP_001000344.1	ILMN_1373845	0002190048	S	747	TGGACCCTGTATTTATACCTATGCTTTACCTGCTGGAAGTGAGAACAAGG	3	-	72884729-72884778	3q24	Rattus norvegicus olfactory receptor 658 (Olr658), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr658; ratchr3-72781897-72780968_ORF	Olr658; ratchr3-72781897-72780968_ORF
Rattus norvegicus	RefSeq	GI_62647038-S	ILMN_264263	RGD1310722_PREDICTED	XM_001066467.1	XM_001066467.1		312248	109473281	XM_001066467.1	RGD1310722_predicted	XP_001066467.1	ILMN_1357031	0006860300	S	4241	CCGACCTGATGGGAAGTCTTGGTGGTCACAGGGCTGCTGTTCCTGTCGAT				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D130059P03 gene (predicted) (RGD1310722_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718125-S	ILMN_66771	LOC291480	XM_225800.4	XM_225800.4		291480	109513186	XM_225800.4	LOC291480	XP_225800.4	ILMN_1365513	0001230132	S	278	CAGACGAAGACTGCAAGAAGCTACAGGATGACCGGCTGAGGCTCCCAGGT	Un|NW_047870.1	-	2859238-2859287		PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC291480), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758847-S	ILMN_273809	ERP29	NM_053961.1	NM_053961.1		117030	16758847	NM_053961.1	Erp29	NP_446413.1	ILMN_1367459	0000130068	S	4276	TGCCTGGACACTGAGGCTGCTGAGACCATACCCTGGACATCCTTGGAGCA	12	+	36231196-36231245	12q16	Rattus norvegicus endoplasmic reticulum protein 29 (Erp29), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence TAS]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IPI]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The regulated release of proteins from a cell or group of cells [goid 9306] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_12621075-S	ILMN_290257	F2	NM_022924.1	NM_022924.1		29251	12621075	NM_022924.1	F2	NP_075213.1	ILMN_1357109	0001090717	S	1832	CTCCTGGGGTGAAGGCTGTGACCGGAATGGGAAATATGGCTTCTACACGC	3	-	76005424-76005431:76005432-76005473	3q24	Rattus norvegicus coagulation factor II (F2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence TAS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of blood coagulation [goid 30194] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of blood coagulation [goid 30194] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence TAS]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IEA]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence ISS]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IEA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_54312083-S	ILMN_283713	HN1	NM_001005876.1	NM_001005876.1		287828	54312083	NM_001005876.1	Hn1	NP_001005876.1	ILMN_1353743	0002480546	S	1116	ACAAGCAAGCTGCCTGGAATTGCAAGGTGAAGCCACAAGGGAGGCCGTCC	10	-	105580055-105580104	10q32.3	Rattus norvegicus hematological and neurological expressed 1 (Hn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_34865158-S	ILMN_273285	TSPAN4	NM_001013070.1	NM_001013070.1		293627	61556865	NM_001013070.1	Tspan4	NP_001013088.1	ILMN_2039341	0001850440	S	311	CTTCAACCTGCTCTTCTGGCTGGGTGGCTGTGGTGTCCTGGGTGTTGGCA	1	+	201670477-201670495:201677480-201677510	1q41	Rattus norvegicus tetraspanin 4 (Tspan4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108789; Tm4sf7	MGC108789; Tm4sf7
Rattus norvegicus	RefSeq	GI_62645889-S	ILMN_57661	ADAM33_PREDICTED	XM_230607.3	XM_230607.3		311425	62645889	XM_230607.3	Adam33_predicted	XP_230607.3	ILMN_1351087	0003990458	S	3664	GCGCTGTTGGCTGTGACTTGCCGAAAGGGTCTGAGTGGTTTATCCAAGGA				3q36	PREDICTED: Rattus norvegicus a disintegrin and metalloprotease domain 33 (predicted) (Adam33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663646-S	ILMN_280161	MRPL32_PREDICTED	XM_001054992.1	XM_001054992.1		291206	109505869	XM_001054992.1	Mrpl32_predicted	XP_001054992.1	ILMN_1355843	0001740204	S	545	GCCCTGAATGTGGTCACCTGAAGCAGAAACACGTCCTTTGTGGCTATTGC				17q12.1	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L32 (predicted) (Mrpl32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47059499-S	ILMN_286793	NSG1	NM_024128.3	NM_024128.3		25247	47059499	NM_024128.3	Nsg1	NP_077042.2	ILMN_1367553	0002850500	S	1438	GGGGCAGGACGGCTGGTGGGGGGCTGATGTGGCACCTTGAAAATAGAATA	14	+	77953516-77953565	14q21	Rattus norvegicus neuron specific gene family member 1 (Nsg1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IEA]	Interacting selectively with a dopamine receptor [goid 50780] [evidence IEA]	Neep21; Bsmrb; PEP1	Neep21; Bsmrb; PEP1
Rattus norvegicus	RefSeq	GI_62641898-S	ILMN_295257	MS4A6A_PREDICTED	XM_001075462.1	XM_001075462.1		293750	109463592	XM_001075462.1	Ms4a6a_predicted	XP_001075462.1	ILMN_1363346	0002100072	S	938	GTACTGTATTGGAGCTTGGCCTGGCGGTCCTCAGTGCTCTGCTTTGGTGG				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 6A (predicted) (Ms4a6a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741531-S	ILMN_295257	MS4A6A_PREDICTED	XM_001075462.1	XM_001075462.1		293750	109463592	XM_001075462.1	Ms4a6a_predicted	XP_001075462.1	ILMN_1373835	0003440519	S	1303	ACCTTGGCTTCATCCACAGCTCAGACCTGCAAACAGTGGCCAGAGTCCCA				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 6A (predicted) (Ms4a6a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648793-S	ILMN_64093	LOC500437	XM_575799.1	XM_575799.1		500437	62648793	XM_575799.1	LOC500437	XP_575799.1	ILMN_1364195	0006450465	S	395	TGCTTCACAAGAATGCCACCTGCGTAAAGCTGCTGTGGACTGGGGAACTC					PREDICTED: Rattus norvegicus similar to LRRGT00094 (LOC500437), mRNA.					
Rattus norvegicus	RefSeq	GI_62641446-S	ILMN_63710	LOC502364	XM_577836.1	XM_577836.1		502364	62641446	XM_577836.1	LOC502364	XP_577836.1	ILMN_1359875	0000380373	S	789	GGAAGGTGGAAGATCCCTCTGCCCCGCCATCTCTATGGACCCGAAGTTCA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933424N09 (LOC502364), mRNA.					
Rattus norvegicus	RefSeq	GI_62649720-S	ILMN_273769	RGD1562327_PREDICTED	XM_001060900.1	XM_001060900.1		500553	109477305	XM_001060900.1	RGD1562327_predicted	XP_001060900.1	ILMN_1369685	0005690528	S	1323	GACGACCTGATGCCCGTCAACCTTAGCCTGGTGGAGGCGTCTTCTGAAAG				5q36	PREDICTED: Rattus norvegicus similar to Zinc finger and BTB domain containing 8 (predicted) (RGD1562327_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742685-S	ILMN_265925	ELOVL6	NM_134383.1	NM_134383.1		171402	25742685	NM_134383.1	Elovl6	NP_599210.1	ILMN_1367680	0007000551	S	2507	ACGGTCCGCGGCCGCCCTTTAGTGAGGGTTAATTTAAATCGTACGTCGCG				2q42	Rattus norvegicus ELOVL family member 6, elongation of long chain fatty acids (yeast) (Elovl6), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IEA]	The elongation of a fatty acid chain by the sequential addition of two-carbon units [goid 30497] [evidence ISS]; The elongation of a fatty acid chain by the sequential addition of two-carbon units [goid 30497] [evidence IEA]	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor) [goid 16747] [evidence ISS]; Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor) [goid 16747] [evidence IEA]	Lce2; rELO2	Lce2; rELO2
Rattus norvegicus	RefSeq	GI_40786440-S	ILMN_276524	TMPRSS8	NM_199371.1	NM_199371.1		287106	40786440	NM_199371.1	Tmprss8	NP_955403.1	ILMN_1361139	0002760463	S	1485	GGAACCGGAAAGGTGGCCTAGCAATTAAGAGACTTCCAGAGCACCAGCGC	10	-	13226139-13226188	10q12	Rattus norvegicus transmembrane protease, serine 8 (intestinal) (Tmprss8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence NAS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA];  [goid 17080] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	tmsp-1	tmsp-1
Rattus norvegicus	RefSeq	GI_62666378-S	ILMN_48905	LOC365609	XM_345127.2	XM_345127.2		365609	62666378	XM_345127.2	LOC365609	XP_345128.2	ILMN_1367760	0001400411	S	14	TAGCTATGTACCCGAAGAGAACATTGCAACTATGAAGTATGGGGCCCAGG					PREDICTED: Rattus norvegicus similar to BTB (POZ) domain containing 9 (LOC365609), mRNA.					
Rattus norvegicus	RefSeq	GI_62657946-S	ILMN_275260	CSTA_PREDICTED	XM_001070963.1	XM_001070963.1		288067	109494461	XM_001070963.1	Csta_predicted	XP_001070963.1	ILMN_1349188	0000840647	S	8	CTGGAGGCTTGACACCGGCCAGACCTGCTACCCCAGAAATCCAGGAGATT				11q22	PREDICTED: Rattus norvegicus cystatin A (stefin A) (predicted) (Csta_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662325-S	ILMN_62521	LOC364517	XM_344487.2	XM_344487.2		364517	62662325	XM_344487.2	LOC364517	XP_344488.2	ILMN_1372805	0006520722	S	52	ACAGGAGGGACCATGATGGTGTCTGGAGTCACAGGCTTCAGTCTTGCCGC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC364517), mRNA.					
Rattus norvegicus	RefSeq	GI_18677740-S	ILMN_273921	FGF12	NM_130814.1	NM_130814.1		170630	18677740	NM_130814.1	Fgf12	NP_570827.1	ILMN_1374457	0002060100	S	469	GTGATCTATTCCTCAACCCTGTATCGCCAGCAGGAATCAGGCCGCGCATG	11	+	74463643-74463692	11q22	Rattus norvegicus fibroblast growth factor 12 (Fgf12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Fhf1	Fhf1
Rattus norvegicus	RefSeq	GI_62649466-S	ILMN_53057	LOC500529	XM_575890.1	XM_575890.1		500529	62649466	XM_575890.1	LOC500529	XP_575890.1	ILMN_1355938	0004150121	S	0	GCACTACCTCCAGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ33084 (LOC500529), mRNA.					
Rattus norvegicus	RefSeq	GI_13027462-S	ILMN_287451	TAS2R107	NM_023995.1	NM_023995.1		78981	13027462	NM_023995.1	Tas2r107	NP_076485.1	ILMN_1355731	0003360072	S	841	GGAAACAAGCAGCTGAAGCAAGCCTCCTTGAAGGCACTGCAGCACTTAAC	4	-	169254188-169254237	4q42	Rattus norvegicus taste receptor, type 2, member 107 (Tas2r107), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R4	T2R4
Rattus norvegicus	RefSeq	GI_11067442-S	ILMN_301703	ATXN3	NM_021702.1	NM_021702.1		60331	11067442	NM_021702.1	Atxn3	NP_067734.1	ILMN_1351407	0001240148	S	2911	CACTGAAGTATGCAGCTACCCCAAGTGTGCTGGTCACATGTCGAGCATTG	6	-	126196148-126196197	6q32	Rattus norvegicus ataxin 3 (Atxn3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Intranuclear foci at which aggregated proteins have been sequestered [goid 42405] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Rsca3	Rsca3
Rattus norvegicus	RefSeq	GI_62644297-S	ILMN_68878	RGD1306704_PREDICTED	XM_215709.3	XM_215709.3		295483	109465533	XM_215709.3	RGD1306704_predicted	XP_215709.1	ILMN_1363981	0004590736	S	305	CTGCCTCCAAGTCCATCTTCCTTTGCTGGCCCATGGAAAATTTTGTGGCC	2	-	221430815-221430864	2q42	PREDICTED: Rattus norvegicus hypothetical LOC295483 (predicted) (RGD1306704_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46048570-S	ILMN_64586	LOC360395	NM_203332.1	NM_203332.1		360395	46048570	NM_203332.1	LOC360395	NP_976077.1	ILMN_1361568	0002760148	S	414	AGCAACCCACACAGGCAGAGAATCAAGAGCCTCCTGCCACCTCTGGGAGT				4q43	Rattus norvegicus hypothetical gene supported by M31032; NM_181440 (LOC360395), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]		CRP; GRP-CB	CRP; GRP-CB
Rattus norvegicus	RefSeq	GI_16923965-S	ILMN_263790	SFRS10	NM_057119.1	NM_057119.1		117259	16923965	NM_057119.1	Sfrs10	NP_476460.1	ILMN_1372000	0006290181	S	1820	GGAATGAGAGAAGGGATCACCACACCTGTGTCATGGATGAAGACTGCCTG	11	+	81044778-81044827	11q23	Rattus norvegicus splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) (Sfrs10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IEP]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence NAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_12018337-S	ILMN_283606	TRPC2	NM_022638.1	NM_022638.1		64573	12018337	NM_022638.1	Trpc2	NP_072160.1	ILMN_1366013	0002680450	S	3110	GGCCTGGAGGTAGTGCCCTTTCTTGACCTTGCATTTCTCTTCATGGCTGG	1	+	159576752-159576801	1q32	Rattus norvegicus transient receptor potential cation channel, subfamily C, member 2 (Trpc2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the plasma membrane surrounding a dendrite [goid 32590] [evidence ISS]	Aggressive behavior based on competition between males of the same species over access to resources such as females, dominance, status, etc. and characterized by noise, threats, and is often less injurious [goid 2121] [evidence ISS]; Aggressive behavior performed in defence of a fixed area against intruders, typically conspecifics [goid 2124] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The actions or reactions of a female, for the purpose of attracting a sexual partner [goid 8050] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence ISS]; The actions or reactions of individuals for the purpose of discriminating between the sexes, for the purpose of finding a suitable mating partner [goid 48047] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS];  [goid 15279] [evidence ISS]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence ISS]	Trrp2	Trrp2
Rattus norvegicus	RefSeq	GI_62646439-S	ILMN_62576	MC3R	XM_575293.1	XM_575293.1		29310	62646439	XM_575293.1	Mc3r	XP_575293.1	ILMN_1374505	0002100358	S	863	CATGTGCAACTCTGTCATCGACCCCCTTATCTACGCCTTCCGCAGCCTGG				3q42	PREDICTED: Rattus norvegicus melanocortin 3 receptor (Mc3r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IDA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641566-S	ILMN_69486	GPR123_PREDICTED	XM_219468.3	XM_219468.3		309097	62641566	XM_219468.3	Gpr123_predicted	XP_219468.3	ILMN_1373533	0006350487	S	1321	TGCACTGTGAGCAGTTAATGGAGGACGAGGCCCATGCTGACCCCTTTCCC				1q41	PREDICTED: Rattus norvegicus G protein-coupled receptor 123 (predicted) (Gpr123_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557155-S	ILMN_295919	GSG1	NM_001013166.1	NM_001013166.1		312793	61557155	NM_001013166.1	Gsg1	NP_001013184.2	ILMN_1364396	0004670070	S	1188	GGCCGCCGCGCTACAGGACAAGAAGTTTCAACAAGAAAACAGCCAGGAGC	4	-	172192111-172192160	4q43	Rattus norvegicus germ cell associated 1 (Gsg1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62649197-S	ILMN_268134	RGD1559679_PREDICTED	XM_578466.1	XM_578466.1		502961	62649197	XM_578466.1	RGD1559679_predicted	XP_578466.1	ILMN_1348895	0006020056	S	490	TGGGAGGTGGTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAGTCCA	5	-	108083326-108083375	5q32	PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (predicted) (RGD1559679_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644542-S	ILMN_58469	PRKACB_PREDICTED	XM_215070.4	XM_215070.4		293508	109465662	XM_215070.4	Prkacb_predicted	XP_215070.3	ILMN_1369102	0006220725	S	4176	GGGTATTGCTGTCTTGTTCTTGGAATGTACTCGTACTGATCGCCCCTTGG	2	-	244946579-244946628	2q44	PREDICTED: Rattus norvegicus protein kinase, cAMP dependent, catalytic, beta (predicted) (Prkacb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664503-S	ILMN_61378	LOC361335	XM_341620.2	XM_341620.2		361335	62664503	XM_341620.2	LOC361335	XP_341621.2	ILMN_1358942	0000610215	S	3564	GGCCCAGAAGACTCAAGGGATCAGCTCTGCTTCTCCTTATTGGCGCTCTA					PREDICTED: Rattus norvegicus similar to A630042L21Rik protein (LOC361335), mRNA.		Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31340794-S	ILMN_298978	C6	NM_176074.2	NM_176074.2		24237	31340794	NM_176074.2	C6	NP_788263.1	ILMN_1369281	0000940427	S	2649	GCCTATTGCCCCCACAATGCCCCAAGGATGAAAACCAACTCCACTGTGTC	2	+	53764180-53764229	2q16	Rattus norvegicus complement component 6 (C6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow [goid 5579] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IMP]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence TAS]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62647151-S	ILMN_53050	LOC365800	XM_345213.2	XM_345213.2		365800	62647151	XM_345213.2	LOC365800	XP_345214.2	ILMN_1353772	0006420524	S	238	AGAGGATGCTGGCTATTAAGAGATGTGACAAGAAGAGAAAGGGCCAAGTG				4q24	PREDICTED: Rattus norvegicus similar to large subunit ribosomal protein L36a (LOC365800), mRNA.					
Rattus norvegicus	RefSeq	GI_62658523-S	ILMN_262945	TMEM184A	NM_001025413.1	NM_001025413.1		304325	70794759	NM_001025413.1	Tmem184a	NP_001020584.1	ILMN_1368827	0001500731	S	1646	AGGGCCTAGCTGTGGCTATCTTGGGTGCGTGAAGAAGACCCCTTGCCCTT	12	+	15309677-15309726	12q11	Rattus norvegicus transmembrane protein 184A (Tmem184a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_56090356-S	ILMN_287391	MARCH3	NM_001007759.1	NM_001007759.1		364878	56090356	NM_001007759.1	March3	NP_001007760.1	ILMN_1349147	0001170035	S	1449	CCCGTTTCTACTGTGGATCTTTGGTGGCTAACTTGAGGGCCCGAATGGTC	18	-	52531011-52531060	18q12.1	Rattus norvegicus membrane-associated ring finger (C3HC4) 3 (March3), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The lipid bilayer surrounding an early endosome [goid 31901] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94648	MGC94648
Rattus norvegicus	RefSeq	GI_47577854-S	ILMN_272509	OLR1194	NM_001000820.1	NM_001000820.1		405108	47577854	NM_001000820.1	Olr1194	NP_001000820.1	ILMN_1362343	0000770403	S	420	CTGCTCTCTGCTGGTGGCTTTTGTCTATGCCATGGGACTCATTGGCTCAA	8	-	38973159-38973208	8q21	Rattus norvegicus olfactory receptor 1194 (Olr1194), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1194	Olr1194
Rattus norvegicus	RefSeq	GI_62652312-I	ILMN_63131	OSR2_PREDICTED	XM_576247.1	XM_576247.1		315039	62652312	XM_576247.1	Osr2_predicted	XP_576247.1	ILMN_1375304	0002760091	S	1243	GTGGAAGAACCTTTAATCAGAGAAGTAATCTGAAAACTCACCTTCTCACC				7q22	PREDICTED: Rattus norvegicus odd-skipped related 2 (Drosophila) (predicted) (Osr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56606089-S	ILMN_301917	ABHD1	NM_001008520.1	NM_001008520.1		313917	56606089	NM_001008520.1	Abhd1	NP_001008520.1	ILMN_1365002	0001990121	S	1239	GGGCCTCGGAGCACTCACTCCTGAAGATGGAAAGAGCTGACCAGAGGACT	6	-	25405568-25405578:25405579-25405617	6q14	Rattus norvegicus abhydrolase domain containing 1 (Abhd1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105659	MGC105659
Rattus norvegicus	RefSeq	Rn.40145	ILMN_301917	ABHD1	NM_001008520.1	NM_001008520.1		313917	56606089	NM_001008520.1	Abhd1	NP_001008520.1	ILMN_1530382	0006620451	S	1314	TTCTTTATTAAATATCAACTCTTCCTGCCTAATAAACTGAGGTTCACTTT	6	-	25405493-25405542	6q14	Rattus norvegicus abhydrolase domain containing 1 (Abhd1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105659	MGC105659
Rattus norvegicus	RefSeq	GI_62661944-S	ILMN_268523	RGD1562700_PREDICTED	XR_007732.1	XR_007732.1		502007	109502475	XR_007732.1	RGD1562700_predicted		ILMN_1355262	0001340020	S	311	TTAAGGCCAAGAAGTCCAGCACTGTGAAGACTCTCAATCTGCCCAGAAGC				15p12	PREDICTED: Rattus norvegicus similar to Natural killer cell protease 1 precursor (RNKP-1) (Granzyme B) (predicted) (RGD1562700_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.233	ILMN_65136	RGD1305481	XM_215260.4	XM_215260.4		294030	109460241	XM_215260.4	RGD1305481	XP_215260.1	ILMN_1530423	0002350102	S	291	AACCTTTTTGTAGTGTGGTGAAGCGTATTAAGGTAGAGAATGAAGAAAAT	1	+	253103663-253103712	1q54	PREDICTED: Rattus norvegicus hypothetical LOC294030 (RGD1305481), mRNA.					
Rattus norvegicus	RefSeq	GI_62642455-S	ILMN_65136	RGD1305481	XM_215260.4	XM_215260.4		294030	109460241	XM_215260.4	RGD1305481	XP_215260.1	ILMN_1365389	0005670239	S	880	GGGGGCCTCAAAAAATGTGCTCTGTTCCTGAGCTGTACAGTTAGCCCCTT	1	+	253105396-253105445	1q54	PREDICTED: Rattus norvegicus hypothetical LOC294030 (RGD1305481), mRNA.					
Rattus norvegicus	RefSeq	GI_62652551-S	ILMN_51824	LOC500883	XM_576284.1	XM_576284.1		500883	62652551	XM_576284.1	LOC500883	XP_576284.1	ILMN_1353862	0005390373	S	281	GGGCAGACCCCACGAGCGAACTTGAGCCTTGGGACCACAGAAATAGCAGA					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC500883), mRNA.					
Rattus norvegicus	RefSeq	GI_34536835-S	ILMN_285175	EHD3	NM_138890.2	NM_138890.2		192249	34536835	NM_138890.2	Ehd3	NP_620245.2	ILMN_1372825	0000780403	S	1766	CGGTGGATGGCAAGATTACGGGCGCCAATGCCAAAAAGGAGATGGTGCGC	6	-	21638996-21639045	6q13	Rattus norvegicus EH-domain containing 3 (Ehd3), mRNA.	A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence ISS]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Ehd2	Ehd2
Rattus norvegicus	RefSeq	GI_27673518-S	ILMN_300846	RGD1564844_PREDICTED	XM_236851.1	XM_236851.1		301172	27673518	XM_236851.1	RGD1564844_predicted	XP_236851.1	ILMN_1374676	0004540707	S	162	GAGCCAGGGTCCCAACTCAAAATCAGACATAACTAAACGAGAGAGCCAGG	9	-	3547247-3547296	9q11	PREDICTED: Rattus norvegicus similar to CG3064-PB (predicted) (RGD1564844_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650483-S	ILMN_276349	SMC6L1_PREDICTED	XM_001068591.1	XM_001068591.1		313961	109479071	XM_001068591.1	Smc6l1_predicted	XP_001068591.1	ILMN_1351388	0002190095	S	3711	GCCTTGCCCTCGTACTGAAAGATTGTGAGGGGAATAATCTGGACTGGTGG				6q14	PREDICTED: Rattus norvegicus SMC6 structural maintenance of chromosomes 6-like 1 (yeast) (predicted) (Smc6l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642973-S	ILMN_47812	RGD1305413	XM_342199.3	XM_342199.3		361902	109464450	XM_342199.3	RGD1305413	XP_342200.3	ILMN_1355309	0005270601	S	4587	GGAGTTATTAGACAGAGAGCAACTCACCATGCGACTCCAGGCACTCCGGC	2	+	54117295-54117326:54117898-54117915	2q16	PREDICTED: Rattus norvegicus similar to FLJ40243 protein (RGD1305413), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506432-S	ILMN_286910	C1QB	NM_019262.1	NM_019262.1		29687	9506432	NM_019262.1	C1qb	NP_062135.1	ILMN_1352142	0005290438	S	767	GTTCTCACCTTCTGCGACTATGCCCAAAACACCTTCCAGGTCACCACGGG	5	-	155647784-155647833	5q36	Rattus norvegicus complement component 1, q subcomponent, beta polypeptide (C1qb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A protein complex composed of six subunits of C1q, each formed of the three homologous polypeptide chains C1QA, C1QB, and C1QB, and tetramer of two C1QR and two C1QS polypeptide chains [goid 5602] [evidence IDA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663693-S	ILMN_63408	MGC112790	XM_344616.3	XM_344616.3		364754	109505088	XM_344616.3	MGC112790	XP_344617.3	ILMN_1359521	0007050736	S	2687	CTAGAGGAGGGACAACTGCTACCTTGTGGGACTGCACGGTTTGGGTATTC	17	+	65971423-65971472	17q12.1	PREDICTED: Rattus norvegicus similar to transmembrane receptor (MGC112790), mRNA.					
Rattus norvegicus	RefSeq	GI_47577732-S	ILMN_270642	OLR1262	NM_001000803.1	NM_001000803.1		405089	47577732	NM_001000803.1	Olr1262	NP_001000803.1	ILMN_1367091	0004670132	S	686	AATCCACTCTGGGAAGGTCCAAGGCCTTCAGCACCTGCAGTTCCCACATA	8	+	41027825-41027874	8q22	Rattus norvegicus olfactory receptor 1262 (Olr1262), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1262	Olr1262
Rattus norvegicus	RefSeq	GI_27679553-S	ILMN_70097	ST5_PREDICTED	XM_219273.4	XM_219273.4		308944	109459223	XM_219273.4	St5_predicted	XP_219273.3	ILMN_2039507	0006040379	S	3211	GTCAGAGGTGTTTATCCGGTTCTTTGTGGAGACCGTGGGGCACTACTCCC	1	-	167121408-167121457	1q33	PREDICTED: Rattus norvegicus suppression of tumorigenicity 5 (predicted) (St5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641113-S	ILMN_70097	ST5_PREDICTED	XM_219273.4	XM_219273.4		308944	109459223	XM_219273.4	St5_predicted	XP_219273.3	ILMN_2039028	0001770056	S	3554	AGTAGTAGAGTCTAAGTGCTTTGCAGAGCCCAGGGAGAGGGCCCAGCCTG	1	-	167120339-167120388	1q33	PREDICTED: Rattus norvegicus suppression of tumorigenicity 5 (predicted) (St5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664436-S	ILMN_266525	ALDH7A1	XM_001059375.1	XM_001059375.1		291450	109507353	XM_001059375.1	Aldh7a1	XP_001059375.1	ILMN_1357320	0000360561	S	1629	CCATCAACTACAGCACGGCCCTCCCTCTGGCTCAAGGTATCAAGTTTCAG				18q12.1	PREDICTED: Rattus norvegicus aldehyde dehydrogenase family 7, member A1 (Aldh7a1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-2-aminoadipate 6-semialdehyde + NADP+ + H2O = L-2-aminoadipate + NADPH + H+ [goid 4043] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_28461130-S	ILMN_297805	TAAR9	NM_175602.1	NM_175602.1		319107	28461130	NM_175602.1	Taar9	NP_783192.1	ILMN_1362973	0003140215	S	626	GGATATTTTTGGTGGCGAAGCAACAGGCTAGGAAGATAGAGGGTTCGGCC	1	+	21800351-21800400	1p12	Rattus norvegicus trace-amine-associated receptor 9 (Taar9), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta3	Ta3
Rattus norvegicus	RefSeq	GI_18677758-S	ILMN_288265	RASGRP4	NM_130824.1	NM_130824.1		170668	18677758	NM_130824.1	Rasgrp4	NP_570837.1	ILMN_1650789	0002570753	S	1991	GCCCAGCACCAGTTTTACCATCCAAAGCTTCCTCAAAGTCCAGTGTCTGA	1	+	84284525-84284568:84284569-84284574	1q21	Rattus norvegicus RAS guanyl releasing protein 4 (Rasgrp4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 9991] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5088] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657152-S	ILMN_69273	EFTUD2	XM_213492.4	XM_213492.4		287739	109489125	XM_213492.4	Eftud2	XP_213492.3	ILMN_1357028	0006370133	S	2775	CCCGGTGATCCGCTGGACAAGAGCATTGTTATCCGTCCCTTGGAGCCACA	10	-	92012859-92012908	10q32.1	PREDICTED: Rattus norvegicus elongation factor Tu GTP binding domain containing 2 (Eftud2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659898-S	ILMN_54383	DUSP10_PREDICTED	XM_223030.4	XM_223030.4		63995	109498330	XM_223030.4	Dusp10_predicted	XP_223030.3	ILMN_1365349	0004540465	S	2415	GGACTGGAGTCAGCTTGGAGGCAGGAATTCAACAATACCAGTGGCTTCCC	13	+	100059224-100059273	13q26	PREDICTED: Rattus norvegicus dual specificity phosphatase 10 (predicted) (Dusp10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643879-S	ILMN_267354	SCNM1_PREDICTED	XM_001055032.1	XM_001055032.1		310662	109467153	XM_001055032.1	Scnm1_predicted	XP_001055032.1	ILMN_1361983	0003120546	S	818	ACAAATAAACTGCTGTGGGTCCTGGGAGTGTGCTGACCGCCGAGGCCACT				2q34	PREDICTED: Rattus norvegicus sodium channel modifier 1 (predicted) (Scnm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649696-A	ILMN_289810	HPCA	NM_017122.1	NM_017122.1		29177	8850220	NM_017122.1	Hpca	NP_058818.1	ILMN_1376948	0001570253	S	1476	GACAGATGAGCAGAGCCCCTCCACAGCGTTCTGTGTGGGAAAGAAGTGCA	5	-	148267941-148267990	5q36	Rattus norvegicus hippocalcin (Hpca), mRNA.			Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	MGC105450	MGC105450
Rattus norvegicus	RefSeq	GI_62655973-S	ILMN_266653	RGD1561041_PREDICTED	XM_001067870.1	XM_001067870.1		497886	109490529	XM_001067870.1	RGD1561041_predicted	XP_001067870.1	ILMN_1363044	0002480497	S	1005	TAGACAAGCTGGGGTTGAGCGTCCAGGCAGGGACTAAGATTCCGCAAGGG				10q21	PREDICTED: Rattus norvegicus similar to C1q and tumor necrosis factor related protein 2 (predicted) (RGD1561041_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667321-S	ILMN_278777	MORC4_PREDICTED	XM_001053814.1	XM_001053814.1		315914	109469964	XM_001053814.1	Morc4_predicted	XP_001053814.1	ILMN_1351203	0003450300	S	2532	GGGCTGCCAGGAGAGCAGAAGTCGAAACATGGCAAAGACAAAGAACCGGA				Xq35	PREDICTED: Rattus norvegicus MORC family CW-type zinc finger 4 (predicted) (Morc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648344	ILMN_270990	CCDC91	NM_001014061.1	NM_001014061.1		312863	62078854	NM_001014061.1	Ccdc91	NP_001014083.1	ILMN_1650500	0000430041	S	1723	AGCGGTTTCCAGTCCCAGGACAAGCCAGAGCAGTATCCAGAAGACCCATC	4	+	185258485-185258534	4q44	Rattus norvegicus coiled-coil domain containing 91 (Ccdc91), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661708-S	ILMN_56975	RGD1311802_PREDICTED	XM_341351.2	XM_341351.2		361068	62661708	XM_341351.2	RGD1311802_predicted	XP_341352.2	ILMN_1356093	0006550072	S	1255	GCCTCCGATTCTTGAGTCCTGGGAATACAGATGTGCTCCAGAGGCCAACG				15p11	PREDICTED: Rattus norvegicus similar to cDNA sequence BC036718 (predicted) (RGD1311802_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643084-S	ILMN_264076	CDH10	XM_001058286.1	XM_001058286.1		29181	109466193	XM_001058286.1	Cdh10	XP_001058286.1	ILMN_1370007	0005420195	S	2548	TATCATTCCTGAAACGTTATTTATACCGCGGCGGACTCCTACGGCCCCGG				2q21	PREDICTED: Rattus norvegicus cadherin 10, transcript variant 3 (Cdh10), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657390-S	ILMN_61451	LOC501734	XM_577134.1	XM_577134.1		501734	62657390	XM_577134.1	LOC501734	XP_577134.1	ILMN_1352883	0002630563	S	173	CTATCGCATGTATGTCACAGTCACAGGAACCAGGGTGACTGCCCCTCTAG					PREDICTED: Rattus norvegicus similar to surface-erythrocyte phosphoprotein (LOC501734), mRNA.					
Rattus norvegicus	RefSeq	GI_62658522-S	ILMN_264001	RGD1305593_PREDICTED	XM_001065112.1	XM_001065112.1		288513	109496541	XM_001065112.1	RGD1305593_predicted	XP_001065112.1	ILMN_1374312	0002030039	S	558	CCAACATGGCGGACTCTCTGTGAGCGAGGTCTTGGAACCTGTCTTTCCAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810042K04 (predicted) (RGD1305593_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507132-S	ILMN_283421	STK39	XM_001057901.1	XM_001057901.1		54348	109470018	XM_001057901.1	Stk39	XP_001057901.1	ILMN_1353067	0005670167	S	2752	GTGGCTCCGGGGATGGCACCATTGCTCCTTACAAGCTAACCCTAGATGCG				3q21	PREDICTED: Rattus norvegicus serine/threonine kinase 39, STE20/SPS1 homolog (yeast) (Stk39), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638438-S	ILMN_49492	RGD1564978_PREDICTED	XM_577686.2	XM_577686.2		502225	109457687	XM_577686.2	RGD1564978_predicted	XP_577686.2	ILMN_1373105	0004920014	S	1434	CTAGGCTGCGCCACATTGAGTTCCCAGTGCCAAAGGACTGCTACCCTGAG	1	+	29727702-29727751	1p11	PREDICTED: Rattus norvegicus similar to LOC432779 protein (predicted) (RGD1564978_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.24188	ILMN_160709	RN.24188	Rn.24188		Rn.24188		33159184	CF106917			ILMN_1530236	0001740280	S	15	ACAAAATACTGAGTCTACTTAATGATGTTCTGTTTCCTAATACTTCTAGG					Shultzomica00168 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig2983 5', mRNA					
Rattus norvegicus	RefSeq	GI_8394312-S	ILMN_287550	SLC4A3	NM_017049.1	NM_017049.1		24781	8394312	NM_017049.1	Slc4a3	NP_058745.1	ILMN_1374867	0004070164	S	3621	AGGACAGGGAGCTGCAGGCGCTGGACTCTGAAGACGCAGAGCCAAACTTT	9	+	74834662-74834683:74835624-74835651	9q33	Rattus norvegicus solute carrier family 4 (anion exchanger), member 3 (Slc4a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]	Ae3; Aep3	Ae3; Aep3
Rattus norvegicus	RefSeq	GI_62649666-S	ILMN_63918	LOC502982	XM_578488.1	XM_578488.1		502982	62649666	XM_578488.1	LOC502982	XP_578488.1	ILMN_1356537	0000380168	S	182	GGCCGAGTGTGTGCTGGAGAAGGCGGATCTCAGAAGTGAAAACCTTCCAG					PREDICTED: Rattus norvegicus similar to cyclase-associated protein (LOC502982), mRNA.					
Rattus norvegicus	RefSeq	GI_27666791-S	ILMN_274944	LOC684525	XM_001070830.1	XM_001070830.1		684525	109494456	XM_001070830.1	LOC684525	XP_001070830.1	ILMN_1375048	0006040017	S	1	ATGGACAAAGGCACCCCAAGAATAAAGGGAGGCCTGTCAGAGGCCAGACC					PREDICTED: Rattus norvegicus similar to stefin A2 like 1 (LOC684525), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648824-S	ILMN_274265	RGD1561916_PREDICTED	XM_001068622.1	XM_001068622.1		500441	109476376	XM_001068622.1	RGD1561916_predicted	XP_001068622.1	ILMN_1368800	0007000037	S	616	AAACCTGAGCGCCTCAACGCCTACGAGCGCGAGGTAGTGGTGAACATGCT				5q22	PREDICTED: Rattus norvegicus similar to testes development-related NYD-SP22 isoform 1 (predicted) (RGD1561916_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654312-S	ILMN_50807	RBM15B_PREDICTED	XM_236613.4	XM_236613.4		315988	109483937	XM_236613.4	Rbm15b_predicted	XP_236613.4	ILMN_1358010	0003610114	S	2321	CTAACGGCTATGCTGTGCTCCTAGCCATCCAGTCAACCCCCAGCGGGCCT	8	-	112105853-112105902	8q32	PREDICTED: Rattus norvegicus RNA binding motif protein 15B (predicted) (Rbm15b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640676-A	ILMN_272846	ST8SIA2	NM_057156.1	NM_057156.1		117523	16924021	NM_057156.1	St8sia2	NP_476497.1	ILMN_1376300	0003360010	S	987	CCACTATTATGACAGCCTCAAGTATGGCTACACCTCCCAGGCCAGCCCCC	1	+	129191767-129191810	1q31	Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 (St8sia2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the reaction: CMP-N-acetylneuraminate + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-R = CMP + alpha-N-acetylneuraminyl-2,8-alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-R [goid 3828] [evidence IEA]; Catalysis of the reaction: CMP-N-acetylneuraminate + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-R = CMP + alpha-N-acetylneuraminyl-2,8-alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-R [goid 3828] [evidence ISS]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence TAS]	Siat8b	Siat8b
Rattus norvegicus	RefSeq	GI_16758581-S	ILMN_289838	NPPC	NM_053750.1	NM_053750.1		114593	16758581	NM_053750.1	Nppc	NP_446202.1	ILMN_1365943	0000510161	S	477	ATGAGCGGTCTGGGATGTTAGTGCAGCGACCCCTGGCGGCGGATTGGGAA	9	-	85434747-85434756:85437546-85437565:85437566-85437585	9q35	Rattus norvegicus natriuretic peptide precursor C (Nppc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP [goid 30828] [evidence IDA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IDA]; Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48513] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle cell proliferation [goid 48660] [evidence IEP]; Any process that modulates the size of blood vessels [goid 50880] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving DNA [goid 51053] [evidence IDA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_16758395-S	ILMN_276548	MMP23	NM_053606.1	NM_053606.1		94339	16758395	NM_053606.1	Mmp23	NP_446058.1	ILMN_1352171	0005890021	S	1083	CACCCACCAGAACGAAAACGAGGTTCGTGAGAGAGGGTAGGAACATGACC	5	-	172487284-172487333	5q36	Rattus norvegicus matrix metallopeptidase 23 (Mmp23), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The production by an organism of new individuals that contain some portion of their genetic material inherited from that organism [goid 3] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658116-S	ILMN_49212	LOC303860	XM_221357.3	XM_221357.3		303860	62658116	XM_221357.3	LOC303860	XP_221357.3	ILMN_1360222	0000670541	S	902	ATGCGAGGGCACCGAGTGTCTCCTCAAGCTACAGAATGATTGTGGGGGCC					PREDICTED: Rattus norvegicus similar to ferritin light chain 1 (LOC303860), mRNA.					
Rattus norvegicus	RefSeq	GI_62666572-S	ILMN_60389	RGD1563528_PREDICTED	XM_578969.2	XM_578969.2		503429	109510445	XM_578969.2	RGD1563528_predicted	XP_578969.1	ILMN_1359397	0004010692	S	528	TCATGCGCTTTGCCTACCGAGTCCAGCCTCGAAACTACCTGCTGATGGCG	X	-	22226350-22226399	Xq13	PREDICTED: Rattus norvegicus similar to Brain protein 44-like (predicted) (RGD1563528_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577470-S	ILMN_291711	OLR476	NM_001000303.1	NM_001000303.1		295746	47577470	NM_001000303.1	Olr476	NP_001000303.1	ILMN_1373360	0000430717	S	662	TTGTGGCTGCTATCTTGAGAATCCGGTCCACTGAAGGAAGGTACAAAGCC	3	-	69253569-69253618	3q24	Rattus norvegicus olfactory receptor 476 (Olr476), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr476	Olr476
Rattus norvegicus	RefSeq	GI_47576718-S	ILMN_277496	OLR1733	NM_001000510.1	NM_001000510.1		309583	47576718	NM_001000510.1	Olr1733	NP_001000510.1	ILMN_1356768	0004590435	S	535	GGGCCTCTCTTATTGCTTTCCTGCTCAGATACTCACCTCAATGAAATCCT	20	-	1290764-1290813	20p12	Rattus norvegicus olfactory receptor 1733 (Olr1733), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr20-1291348-1290419_ORF; Olr1733	ratchr20-1291348-1290419_ORF; Olr1733
Rattus norvegicus	RefSeq	GI_62664754-S	ILMN_59749	LOC498900	XM_574187.1	XM_574187.1		498900	62664754	XM_574187.1	LOC498900	XP_574187.1	ILMN_1361583	0002970204	S	62	CCGCAGGCATAGAGCACTGCCAGGAGCCTCAGAAGAAAGCAGTGGAATCA					PREDICTED: Rattus norvegicus similar to cAMP-specific 3,5-cyclic phosphodiesterase 4D (DPDE3) (LOC498900), mRNA.					
Rattus norvegicus	RefSeq	GI_47577652-S	ILMN_292331	OLR552	NM_001001055.1	NM_001001055.1		405943	47577652	NM_001001055.1	Olr552	NP_001001055.1	ILMN_1375208	0003450605	S	872	GCCTGAGAAATAAGGATGTGAAGGAAGCAGCCCAGAAGTTGATGTTGGGG	3	-	70841951-70842000	3q24	Rattus norvegicus olfactory receptor 552 (Olr552), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr552	Olr552
Rattus norvegicus	RefSeq	GI_62661427-S	ILMN_64213	RGD1560771_PREDICTED	XM_573771.2	XM_573771.2		498511	109501591	XM_573771.2	RGD1560771_predicted	XP_573771.1	ILMN_1366303	0004610707	S	275	AGAGAAGGGTCCGCACACTGTTGTCGGTGCTGAAAGACCCCATAGCAAGG	15	-	31825637-31825686	15p13	PREDICTED: Rattus norvegicus similar to STELLA (predicted) (RGD1560771_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655815-S	ILMN_55946	LOC287111	XM_213245.2	XM_213245.2		287111	62655815	XM_213245.2	LOC287111	XP_213245.2	ILMN_1366055	0004120010	S	1558	CTTCTTGGTCAGGGCTCAGCTTTCTGTGTTCCTGGGGCAGTCCTTGGCTG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13909 (predicted) (LOC287111), mRNA.					
Rattus norvegicus	RefSeq	GI_62657017-S	ILMN_60820	LOC303515	XM_239336.4	XM_239336.4		303515	109488947	XM_239336.4	LOC303515	XP_239336.4	ILMN_1349567	0004810026	S	1549	TCCCCGCATCACCTCCAGACCAAGGCATATGTGCGCCAGTTCCAGGTCAT	10	+	87620301-87620350	10q31	PREDICTED: Rattus norvegicus hypothetical protein LOC303515 (LOC303515), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090448-S	ILMN_290903	RIBC1	NM_001007715.1	NM_001007715.1		317431	56090448	NM_001007715.1	Ribc1	NP_001007716.1	ILMN_1354658	0006510142	S	1117	GGCTGAAGCAGCACTGGAGCTGGAAGAACAGGAGAGGGAATTGTGTGCAG	X	-	41492343-41492392	Xq21	Rattus norvegicus RIB43A domain with coiled-coils 1 (Ribc1), mRNA.				MGC93902	MGC93902
Rattus norvegicus	RefSeq	GI_62659166-S	ILMN_49792	LOC498213	XM_573431.1	XM_573431.1		498213	62659166	XM_573431.1	LOC498213	XP_573431.1	ILMN_1363038	0006200097	S	908	CCCAGCTCAAAGGACCAGGACAGGCAAATAAAGGACACCATTCAAAGGAC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498213), mRNA.					
Rattus norvegicus	RefSeq	GI_62654983-S	ILMN_266328	RGD1309095_PREDICTED	XM_001060014.1	XM_001060014.1		301381	109487043	XM_001060014.1	RGD1309095_predicted	XP_001060014.1	ILMN_1368909	0005050279	S	620	GCAGGTGTTTTTCTTGGAGGTCGTTCAATGGGCTCAAGAGCAGCTGCTTC				9q22	PREDICTED: Rattus norvegicus similar to hypothetical protein BC015148 (predicted), transcript variant 1 (RGD1309095_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664880-S	ILMN_66266	LOC498914	XM_574204.1	XM_574204.1		498914	62664880	XM_574204.1	LOC498914	XP_574204.1	ILMN_1353778	0000540446	S	29	GGGAGTAAAACAAAGGAAGGCAGTGTGCATCGCGGTGATCGCCAAGGAGA				19p11	PREDICTED: Rattus norvegicus similar to hypothetical protein, 2-6 (LOC498914), mRNA.					
Rattus norvegicus	RefSeq	GI_62646599-S	ILMN_49263	LOC499963	XM_575313.1	XM_575313.1		499963	62646599	XM_575313.1	LOC499963	XP_575313.1	ILMN_1352734	0006100497	S	236	CACCATTGATGATATGCAGAGGGCAGGGATCTGGTGGGGTCTGATCGCCA				4q11	PREDICTED: Rattus norvegicus similar to dihydrofolate reductase (LOC499963), mRNA.					
Rattus norvegicus	RefSeq	GI_11136635-S	ILMN_283288	LTBP2	NM_021586.1	NM_021586.1		59106	11136635	NM_021586.1	Ltbp2	NP_067597.1	ILMN_1361640	0000450373	S	6150	GTCGCTTTGGGCAAATCAGTCCAAGCCTCCTTAGAGCTTCTGTGTGCCTG	6	-	108826682-108826731	6q31	Rattus norvegicus latent transforming growth factor beta binding protein 2 (Ltbp2), mRNA.		The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence NAS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650530-S	ILMN_288109	TYKI_PREDICTED	XM_001075137.1	XM_001075137.1		314004	109479206	XM_001075137.1	Tyki_predicted	XP_001075137.1	ILMN_1371316	0003710707	S	3108	GCCTCTCTGAGATGATTGCACCAGAAGCTGAGAAGGAAGTCTTAGCGCTC				6q16	PREDICTED: Rattus norvegicus thymidylate kinase family LPS-inducible member (predicted) (Tyki_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665399-S	ILMN_282879	SULT5A1_PREDICTED	XM_001079454.1	XM_001079454.1		292077	109509022	XM_001079454.1	Sult5a1_predicted	XP_001079454.1	ILMN_1366816	0002680040	S	626	CCCTGGGGCCAAAGGAAGAGGAGATCATACTGGAACACAGCAGCTTCTCC				19q12	PREDICTED: Rattus norvegicus sulfotransferase family 5A, member 1 (predicted) (Sult5a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577294-S	ILMN_289920	OLR406	NM_001000383.1	NM_001000383.1		296669	47577294	NM_001000383.1	Olr406	NP_001000383.1	ILMN_1365638	0002060390	S	693	CAAGGGAATCTGCAAAGCCTTGTCCACATGTGGGTCACATCTCTGTGTGG	3	+	16176615-16176664	3p11	Rattus norvegicus olfactory receptor 406 (Olr406), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr406	Olr406
Rattus norvegicus	RefSeq	GI_62643491-S	ILMN_50174	LOC499625	XM_574949.1	XM_574949.1		499625	62643491	XM_574949.1	LOC499625	XP_574949.1	ILMN_1357489	0001780377	S	1020	TAGTTAAGCATCAGCTTTCATGGGGCAACACCTGAAGTTCCCAAATAATT					PREDICTED: Rattus norvegicus similar to Selenoprotein T precursor (LOC499625), mRNA.					
Rattus norvegicus	RefSeq	GI_62665828-S	ILMN_67978	COL18A1	XM_241632.4	XM_241632.4		85251	109509318	XM_241632.4	Col18a1	XP_241632.4	ILMN_1364899	0004050360	S	3993	TGGGCGCAGGCTGATGGAGAGCTACTGTGAGACGTGGAGGACTGAAGCTA	20	+	11981307-11981356	20p12	PREDICTED: Rattus norvegicus procollagen, type XVIII, alpha 1 (Col18a1), mRNA.	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A collagen homotrimer of alpha1(XVIII) chains [goid 30938] [evidence TAS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The change in form (cell shape and size) that occurs during the differentiation of an endothelial cell [goid 1886] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it [goid 51599] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_14091737-S	ILMN_294713	EIF2B2	NM_032058.1	NM_032058.1		84005	14091737	NM_032058.1	Eif2b2	NP_114447.1	ILMN_1358443	0005340600	S	1283	GGCCTTGCTTCCCTGGCATTTTGGGGCCACTTTGTGACTAGGCTGTGTTT	6	+	109272592-109272641	6q31	Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 2 beta (Eif2b2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence TAS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence IEA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEA]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IDA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence IEA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence TAS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656199-S	ILMN_298734	MFAP4	NM_001034124.1	NM_001034124.1		287382	77627993	NM_001034124.1	Mfap4	NP_001029296.1	ILMN_1356766	0004780215	S	1432	CTCTGGGGGCTGGGAGTGGTGGGAAGTAGAGGTCTCAATAAACCTTCAGG	10	+	47649043-47649092	10q23	Rattus norvegicus microfibrillar-associated protein 4 (Mfap4), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]	MGC124818	MGC124818
Rattus norvegicus	RefSeq	GI_62638840-S	ILMN_69400	LOC499066	XM_574347.1	XM_574347.1		499066	62638840	XM_574347.1	LOC499066	XP_574347.1	ILMN_1357353	0002630288	S	345	AGTGCTGGCTACTGGGGGACCAGAAACCCTCTTTCCCACCCGGTCATAAA					PREDICTED: Rattus norvegicus similar to Scavenger receptor class F, member 1 (LOC499066), mRNA.					
Rattus norvegicus	RefSeq	GI_62663616-S	ILMN_287524	GPX5	XM_001059839.1	XM_001059839.1		113919	109505942	XM_001059839.1	Gpx5	XP_001059839.1	ILMN_1362509	0005550487	S	74	ATCTCGTTCCACTTCTTCTAGCCAGCTATGTGCAGACAACCCCCAGGCTG				17q11	PREDICTED: Rattus norvegicus glutathione peroxidase 5 (Gpx5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653563-S	ILMN_290720	RGD1563821_PREDICTED	XM_001066131.1	XM_001066131.1		500984	109484580	XM_001066131.1	RGD1563821_predicted	XP_001066131.1	ILMN_1361364	0000360301	S	323	GCAGAGGCTCCCAGAGGACCCAAGCACAGCGGGAAAGAGGACTCTGAATT				8q22	PREDICTED: Rattus norvegicus RGD1563821 (predicted) (RGD1563821_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647848-S	ILMN_276335	PRICKLE2_PREDICTED	XM_001073957.1	XM_001073957.1		312563	109473891	XM_001073957.1	Prickle2_predicted	XP_001073957.1	ILMN_1357340	0004610148	S	3639	ACTTGCATGCCTGTCCACCAGTACCTTCGAGTGATAGTAAACGGTGGCCC				4q34	PREDICTED: Rattus norvegicus prickle-like 2 (Drosophila) (predicted) (Prickle2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663723-S	ILMN_65103	RGD1566047_PREDICTED	XM_574062.2	XM_574062.2		498776	109505124	XM_574062.2	RGD1566047_predicted	XP_574062.1	ILMN_1362524	0000770347	S	1846	CCTGTGCTGCTGTTTTAAGAGTTGGCCTCACACCCTGATGATTCCTTGTC	17	-	67848876-67848925	17q12.1	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (predicted) (RGD1566047_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393546-S	ILMN_262617	HNRNPA1	NM_017248.1	NM_017248.1		29578	8393546	NM_017248.1	Hnrnpa1	NP_058944.1	ILMN_1373050	0006290553	S	1010	GCTTAGCAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAG	7	+	142153825-142153874	7q36	Rattus norvegicus heterogeneous nuclear ribonucleoprotein A1 (Hnrnpa1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition [goid 380] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence ISS]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence TAS]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of substances out of the nucleus [goid 51168] [evidence ISS]; The directed movement of substances into the nucleus [goid 51170] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence TAS]; Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666795-S	ILMN_49554	LOC501553	XM_576955.1	XM_576955.1		501553	62666795	XM_576955.1	LOC501553	XP_576955.1	ILMN_1373168	0006040138	S	520	ATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGG					PREDICTED: Rattus norvegicus similar to LRRGT00078 (LOC501553), mRNA.					
Rattus norvegicus	RefSeq	GI_62648341-S	ILMN_286338	MRPS35_PREDICTED	XM_001074321.1	XM_001074321.1		297727	109474472	XM_001074321.1	Mrps35_predicted	XP_001074321.1	ILMN_1350095	0003450671	S	839	AGTGTGGCGCCGAGCAGAGAAGAGCTGCTGGGGACTAAAGAGGTCGAAGA				4q44	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S35 (predicted) (Mrps35_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018309-S	ILMN_295932	FZD4	NM_022623.1	NM_022623.1		64558	12018309	NM_022623.1	Fzd4	NP_072145.1	ILMN_1352501	0002940017	S	1751	CTGGGAAGGTAAAGAGAGAGAAGAGGGGGAATGGTTGGGTGAAGCCAGGG	1	+	145957565-145957592:145957593-145957614	1q32	Rattus norvegicus frizzled homolog 4 (Drosophila) (Fzd4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4926] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with Wnt-protein, a secreted growth factor involved in signaling [goid 17147] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62718660	ILMN_279388	MGC116197	NM_001025755.1	NM_001025755.1		367620	71043739	NM_001025755.1	MGC116197	NP_001020926.1	ILMN_1650901	0006290025	S	651	CATAGACCAGGACAAGATCTCCCTTGGTGAGAAGTGGTACAGGAGGAGCG	Un|NW_047936.1	+	623238-623287		Rattus norvegicus similar to RIKEN cDNA 1700001E04 (MGC116197), mRNA.					
Rattus norvegicus	RefSeq	GI_62718652-S	ILMN_279388	MGC116197	NM_001025755.1	NM_001025755.1		367620	71043739	NM_001025755.1	MGC116197	NP_001020926.1	ILMN_1374494	0004760047	S	1030	TGGATGGTCTTGTCCTTCATACCCCACTCCAATAGAAGAGACCTCCTTAC	Un|NW_047936.1	+	623617-623666		Rattus norvegicus similar to RIKEN cDNA 1700001E04 (MGC116197), mRNA.					
Rattus norvegicus	RefSeq	GI_62718664-S	ILMN_279388	MGC116197	NM_001025755.1	NM_001025755.1		367620	71043739	NM_001025755.1	MGC116197	NP_001020926.1	ILMN_1367132	0006520541	S	573	GAGGCCGGAATGAACATCTGTGTCCCCAGTGCCAAGCAACAGCAGGTTTG	Un|NW_047936.1	+	617789-617833:623205-623209		Rattus norvegicus similar to RIKEN cDNA 1700001E04 (MGC116197), mRNA.					
Rattus norvegicus	RefSeq	GI_62652230-S	ILMN_298290	LOC680647	XM_001058142.1	XM_001058142.1		680647	109480641	XM_001058142.1	LOC680647	XP_001058142.1	ILMN_1359819	0003780066	S	718	CGGTGGTGGAACTTAGCCGCCAGGAACGGGATGGGCTGTGCAGCAAATTT	7	+	63564268-63564295:63566150-63566171	7q22	PREDICTED: Rattus norvegicus similar to TAFA2 protein (LOC680647), mRNA.					
Rattus norvegicus	RefSeq	GI_62662305-S	ILMN_61462	LOC502049	XM_577482.1	XM_577482.1		502049	62662305	XM_577482.1	LOC502049	XP_577482.1	ILMN_1369459	0002480167	S	545	TCTTAGTGTCCATGTCAATAGGCACAGGGTTCACTCTTGCCATCAACGCC				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502049), mRNA.					
Rattus norvegicus	RefSeq	GI_61098185-S	ILMN_48904	FGG	NM_012559.2	NM_012559.2		24367	61098185	NM_012559.2	Fgg	NP_036691.2	ILMN_1356909	0004280113	S	1281	TCCATTGGAGATGGGCAGCAACATCACATGGGAGGATCCAAACAGGTTGG	2	+	174733814-174733858:174734391-174734395	2q34	Rattus norvegicus fibrinogen gamma chain (Fgg), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds [goid 5577] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654242-S	ILMN_69951	RGD1560174_PREDICTED	XM_576466.2	XM_576466.2		501051	109483931	XM_576466.2	RGD1560174_predicted	XP_576466.2	ILMN_1353676	0003710068	S	168	GTGCTGGTGGAGGAAGATCCTGGCCGAAAGACAGGAAAGCAATCGCCTGG	8	-	111713317-111713366	8q32	PREDICTED: Rattus norvegicus similar to IQ motif containing F4 (predicted) (RGD1560174_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13487907-S	ILMN_296161	PSGB1	NM_021677.1	NM_021677.1		59313	13487907	NM_021677.1	Psgb1	NP_067709.1	ILMN_1350826	0006760280	S	1530	CAGCCAGTCAGGTGGCCATGATGAATGAGAGCCCCTTCCTCACTTCCTAC	1	+	77597754-77597770:77597771-77597803	1q21	Rattus norvegicus pregnancy-specific beta 1-glycoprotein (Psgb1), mRNA.		The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]		Psg	Psg
Rattus norvegicus	RefSeq	GI_62648742-S	ILMN_61517	LOC297951	XM_232844.2	XM_232844.2		297951	62648742	XM_232844.2	LOC297951	XP_232844.2	ILMN_1354861	0000520735	S	387	GTGGGCCACTCTTTTGGACTTTATGGGAAAGGCCAGAGGGAAGCCGCCCT				5q21	PREDICTED: Rattus norvegicus similar to glutathione S-transferase subunit pi (LOC297951), mRNA.					
Rattus norvegicus	RefSeq	GI_62659997-S	ILMN_288020	LOC679129	XM_001054818.1	XM_001054818.1		679129	109507563	XM_001054818.1	LOC679129	XP_001054818.1	ILMN_1366233	0004230687	S	1927	CTCTGGGAATGAGGAGAAAGTAGCCTGGGTGGGGCTGGAGGCTTGTCACA					PREDICTED: Rattus norvegicus similar to Peroxisomal biogenesis factor 19 (Peroxin-19) (Peroxisomal farnesylated protein) (LOC679129), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62640805-S	ILMN_55072	FSD2_PREDICTED	XM_218860.4	XM_218860.4		308779	109458920	XM_218860.4	Fsd2_predicted	XP_218860.2	ILMN_1359637	0000780008	S	1900	GGTGTGGCCTGTGAAGATGTCCCTAAACAGGAAGACCTGGGAGCAAACCG	1	-	137751841-137751890	1q31	PREDICTED: Rattus norvegicus fibronectin type III and SPRY domain containing 2 (predicted) (Fsd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981503-S	ILMN_275903	ATXN1	NM_012726.1	NM_012726.1		25049	6981503	NM_012726.1	Atxn1	NP_036858.1	ILMN_1363653	0004850504	S	5266	GGTCAGGGCGCTCTCAGAGCCCAGCTGGCAGCATAATTGTCCACCTCTTA				17p13	Rattus norvegicus ataxin 1 (Atxn1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; A complex of NXF1 and NXF2 required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm [goid 42272] [evidence ISS]; A complex of NXF1 and NXF2 required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm [goid 42272] [evidence ISS]; Intranuclear foci at which aggregated proteins have been sequestered [goid 42405] [evidence ISS]; Intranuclear foci at which aggregated proteins have been sequestered [goid 42405] [evidence ISS]; Intranuclear foci at which aggregated proteins have been sequestered [goid 42405] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43569] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The directed movement of substances out of the nucleus [goid 51168] [evidence ISS]; The directed movement of substances out of the nucleus [goid 51168] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a sequence of uracil residues in an RNA molecule [goid 8266] [evidence ISS]; Interacting selectively with a sequence of uracil residues in an RNA molecule [goid 8266] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with a sequence of guanine residues in an RNA molecule [goid 34046] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Sca1; RNSCA1	Sca1; RNSCA1
Rattus norvegicus	RefSeq	GI_50054292-S	ILMN_267780	VAMP2	NM_012663.2	NM_012663.2		24803	50054292	NM_012663.2	Vamp2	NP_036795.1	ILMN_1360798	0005700601	S	2004	AACTGTGGTGTGAAAGGGTAGGAGAGATGCTGGGGGTGGGGGTGCTTGTG	10	+	55851966-55852015	10q24	Rattus norvegicus vesicle-associated membrane protein 2 (Vamp2), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence IDA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence IEA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence ISS]	The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IEA]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence ISS]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IEA]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IPI]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IPI]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	SYB; RATVAMPIR; Syb2; RATVAMPB	SYB; RATVAMPIR; Syb2; RATVAMPB
Rattus norvegicus	RefSeq	GI_62642035-S	ILMN_263748	MAMDC2	XM_001078660.1	XM_001078660.1		309410	109463695	XM_001078660.1	Mamdc2	XP_001078660.1	ILMN_1349920	0004810358	S	2600	CACCAGAGGTAAGAGAAAGGTGTTTTCGTAGAGCCCCAGGGTAGGTCTGT				1q51	PREDICTED: Rattus norvegicus MAM domain containing 2 (Mamdc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_11560009-S	ILMN_274941	PRLH	NM_022222.1	NM_022222.1		63850	11560009	NM_022222.1	Prlh	NP_071558.1	ILMN_1353573	0003520500	S	201	ACTCAGCTGCCTCCCACTGGATGGACGCACCAAGTTCTCTCAGCGTGGAT	9	+	90154882-90154931	9q36	Rattus norvegicus prolactin releasing hormone (Prlh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; Behavior associated with the intake of food [goid 7631] [evidence IMP]	Interacting selectively with the prolactin receptor [goid 5148] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IMP]; Interacting selectively with a prolactin-releasing peptide receptor [goid 31861] [evidence IMP]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	prrp; Prh	prrp; Prh
Rattus norvegicus	RefSeq	GI_62640786-S	ILMN_54164	IQGAP1_PREDICTED	XM_341877.3	XM_341877.3		361598	109458978	XM_341877.3	Iqgap1_predicted	XP_341878.3	ILMN_1373759	0001690133	S	5022	CACAGCAGCAAGACTGCATGAGAAGGGAGTGCTTCTGGAAATTGAGGACC	1	-	136560899-136560948	1q31	PREDICTED: Rattus norvegicus IQ motif containing GTPase activating protein 1 (predicted) (Iqgap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666666-S	ILMN_66077	LOC300289	XM_235733.3	XM_235733.3		300289	62666666	XM_235733.3	LOC300289	XP_235733.3	ILMN_1369345	0002680279	S	2366	CATGGAGGAGAAGCGAGACGACAAGAGCTGGAAGGGGAGCCTAGGTAAGA				Xq14	PREDICTED: Rattus norvegicus similar to angiomotin (LOC300289), mRNA.					
Rattus norvegicus	RefSeq	GI_62646681-S	ILMN_277321	RGD1562135_PREDICTED	XM_001062669.1	XM_001062669.1		499979	109472968	XM_001062669.1	RGD1562135_predicted	XP_001062669.1	ILMN_1358641	0006510576	S	1370	GGACAACAAGCCAATGCCAGTGTCCCTATAGCCGTGAGAAACAACAGCGC				4q11	PREDICTED: Rattus norvegicus RGD1562135 (predicted) (RGD1562135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577098-S	ILMN_300349	OLR766	NM_001000996.1	NM_001000996.1		405356	47577098	NM_001000996.1	Olr766	NP_001000996.1	ILMN_1353629	0000070341	S	681	GAGCTCTAAAGATGGTGCATCTAAGGCTCTGTCCACATGCACTGCTCACA	3	-	97121331-97121380	3q34	Rattus norvegicus olfactory receptor 766 (Olr766), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr766	Olr766
Rattus norvegicus	RefSeq	GI_34867224-S	ILMN_67848	LOC366342	XM_345513.1	XM_345513.1		366342	34867224	XM_345513.1	LOC366342	XP_345514.1	ILMN_1349389	0001400463	S	182	AAATATTTGTCTCGCCAGCGCCTTGTCAAAGTCCGTGTGCTGGGCAGCGC					PREDICTED: Rattus norvegicus similar to hypothetical GTP-binding protein RAGD (LOC366342), mRNA.					
Rattus norvegicus	RefSeq	GI_16758459-S	ILMN_302498	CXCL2	NM_053647.1	NM_053647.1		114105	16758459	NM_053647.1	Cxcl2	NP_446099.1	ILMN_1352133	0005900576	S	826	AGGACTGTGCCTGTCCACGTCATTTTCTGTAAGCCCCGAGAAGGGCGGGA	14	-	18677358-18677407	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 2 (Cxcl2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IMP]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence IMP]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Mip-2; Scyb2	Mip-2; Scyb2
Rattus norvegicus	RefSeq	GI_62661392-S	ILMN_62347	LOC290150	XM_224108.3	XM_224108.3		290150	62661392	XM_224108.3	LOC290150	XP_224108.3	ILMN_1358736	0006860204	S	417	CACAAGACATCAGGAAGACACCACAGTGTGAGCAGAGGAGAGCAGGTGGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC290150), mRNA.					
Rattus norvegicus	RefSeq	GI_62666095-A	ILMN_265474	FRK	NM_024368.1	NM_024368.1		79209	13242262	NM_024368.1	Frk	NP_077344.1	ILMN_1376899	0000670097	S	4305	CAGTTGACAGAGCATGGGGTAGCTTCCGTTGTTTATTTCAGATTGCCTGG				20q12	Rattus norvegicus fyn-related kinase (Frk), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648554-S	ILMN_286967	RRS1_PREDICTED	XM_001066738.1	XM_001066738.1		297784	109476055	XM_001066738.1	Rrs1_predicted	XP_001066738.1	ILMN_1367848	0005890239	S	1057	ACCTTCGGGCAGGAGAAAGGGCGGTCCACCGAGTCAGGGAGAGAAAAGGA				5q11	PREDICTED: Rattus norvegicus RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (predicted) (Rrs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638491-S	ILMN_295407	RGD1560234_PREDICTED	XR_008340.1	XR_008340.1		499012	109460726	XR_008340.1	RGD1560234_predicted		ILMN_1351892	0000610368	S	892	GAGTCAAGTGAAGCATGTGACTCCAGCATCAGGACCAGCATCAGTAGCTG				1p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200013F24 (predicted) (RGD1560234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666854-S	ILMN_52750	LOC501560	XM_576965.1	XM_576965.1		501560	62666854	XM_576965.1	LOC501560	XP_576965.1	ILMN_1354474	0005390082	S	2538	GCACCGCATCTCGTAAAGGTAAGCAGCCCTCTCTATATCCAGTCATTGCT				Xq21	PREDICTED: Rattus norvegicus similar to ribosomal protein S6 kinase 2 (LOC501560), mRNA.					
Rattus norvegicus	RefSeq	GI_62662980-S	ILMN_63325	LOC498665	XM_579846.1	XM_579846.1		498665	62662980	XM_579846.1	LOC498665	XP_579846.1	ILMN_1363921	0004210494	S	236	GCAGTCCCGACAGAGGCACTCCCGCTTATTCATGCCTACCGGAAACGCAA					PREDICTED: Rattus norvegicus LOC498665 (LOC498665), mRNA.					
Rattus norvegicus	RefSeq	GI_11560051-S	ILMN_284266	DUSP12	NM_022248.1	NM_022248.1		64014	11560051	NM_022248.1	Dusp12	NP_071584.1	ILMN_1352941	0002570014	S	1028	AGAAACCATGAACTTAGGACTCAGCTTGGGATGGACCCTGGGAAAGGCGC	13	-	86737296-86737335:86737336-86737345	13q24	Rattus norvegicus dual specificity phosphatase 12 (Dusp12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence ISS]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	GKAP	GKAP
Rattus norvegicus	RefSeq	GI_62658640-S	ILMN_271760	LOC686312	XM_001073483.1	XM_001073483.1		686312	109496645	XM_001073483.1	LOC686312	XP_001073483.1	ILMN_1368867	0004230746	S	408	CACAGTGGTGCTCTGAGTGATAGTGAGCACAGGTGCAAACCTGGGTACCA					PREDICTED: Rattus norvegicus similar to Salivary gland secretion 1 CG3047-PA (LOC686312), mRNA.					
Rattus norvegicus	RefSeq	GI_62718526-S	ILMN_66319	LOC288978	XM_213864.4	XM_213864.4		288978	109513726	XM_213864.4	LOC288978	XP_213864.4	ILMN_1361358	0006420056	S	120	GCTGGGCTTGGAGGACGACGACACACTCCTGCTAAAGGAAGACAGAACGC	Un|NW_047910.1	-	223546-223595		PREDICTED: Rattus norvegicus hypothetical LOC288978 (LOC288978), mRNA.					
Rattus norvegicus	RefSeq	GI_62664620-S	ILMN_51105	ME2_PREDICTED	XM_225729.4	XM_225729.4		307270	109506778	XM_225729.4	Me2_predicted	XP_225729.3	ILMN_1351957	0005900750	S	1874	CCCAGGTGTGGCTTTAGCTGTTATTCTCTGTGAAGCCCGACACATCAGTG	18	-	70549848-70549893:70556505-70556508	18q12.2	PREDICTED: Rattus norvegicus malic enzyme 2, NAD(+)-dependent, mitochondrial (predicted) (Me2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576658-S	ILMN_283951	OLR1692	NM_001000888.1	NM_001000888.1		405189	47576658	NM_001000888.1	Olr1692	NP_001000888.1	ILMN_1364982	0003440348	S	753	TTCAACAGGCATTTGTGCCTATCTAAAGCCAACCTCAGATGCACCAACTG	20	-	636829-636878	20p12	Rattus norvegicus olfactory receptor 1692 (Olr1692), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1692	Olr1692
Rattus norvegicus	RefSeq	GI_62654975-S	ILMN_267411	GPR45_PREDICTED	XM_001060511.1	XM_001060511.1		301372	109487055	XM_001060511.1	Gpr45_predicted	XP_001060511.1	ILMN_1374923	0004120717	S	923	CGTGCGTCCTGTGGCTCAGTTACCTCAAGTCTGTCTTCAACCCCATCGTC				9q22	PREDICTED: Rattus norvegicus G protein-coupled receptor 45 (predicted) (Gpr45_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643220-S	ILMN_59973	LOC499575	XM_574900.1	XM_574900.1		499575	62643220	XM_574900.1	LOC499575	XP_574900.1	ILMN_1357471	0002810113	S	458	GATAATAGGGGGAGAGCCCAGGAGCGGCAGGACCCCTGCCTGAGACACCT					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499575), mRNA.					
Rattus norvegicus	RefSeq	GI_47576432-S	ILMN_279288	OLR1585	NM_001001109.1	NM_001001109.1		406005	47576432	NM_001001109.1	Olr1585	NP_001001109.1	ILMN_1356687	0004810537	S	890	AAGCGGCTTTCAAGAGGGTCACACAGAGGATTAAGGGTGTGCTGGGTTGA	13	+	89798248-89798297	13q24	Rattus norvegicus olfactory receptor 1585 (Olr1585), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1585	Olr1585
Rattus norvegicus	RefSeq	GI_13027409-S	ILMN_268637	TAS2R119	NM_023993.1	NM_023993.1		78979	13027409	NM_023993.1	Tas2r119	NP_076483.1	ILMN_1371926	0001660086	S	873	CCATTGTAAGTGTTGTCATTGTACAAGAGCTTGGGTCACCTCAAGGAGCC	2	+	84652568-84652617	2q22	Rattus norvegicus taste receptor, type 2, member 119 (Tas2r119), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R1	T2R1
Rattus norvegicus	RefSeq	GI_62661660-S	ILMN_285925	CDCA2	XM_001068286.1	XM_001068286.1		305984	109502641	XM_001068286.1	Cdca2	XP_001068286.1	ILMN_1371588	0001410142	S	3012	GGGCCCTTGCCATCTATCTCAGGCAGTGAGAGCCAGGGTGTTGGTTCTTC				15p12	PREDICTED: Rattus norvegicus cell division cycle associated 2, transcript variant 1 (Cdca2), mRNA.					
Rattus norvegicus	RefSeq	GI_62646194-S	ILMN_271348	LOC502684	NM_001025060.1	NM_001025060.1		502684	68163546	NM_001025060.1	LOC502684	NP_001020231.1	ILMN_1356740	0004760048	S	967	AGTCTCTGGTGGTGAAAACCCAGGAACCCCATGAGAACAGACTTCTGCTG	3	+	142762216-142762265	3q41	Rattus norvegicus hypothetical protein LOC502684 (LOC502684), mRNA.					
Rattus norvegicus	RefSeq	GI_62645501-S	ILMN_279263	ZCSL3_PREDICTED	XM_001079802.1	XM_001079802.1		362184	109470445	XM_001079802.1	Zcsl3_predicted	XP_001079802.1	ILMN_1357457	0002060750	S	237	GCAGCGGCATGAAGATGAGCTAAGAAATGTGGGGCCAGTAGATGCACAGG				3q33	PREDICTED: Rattus norvegicus zinc finger, CSL-type containing 3 (predicted) (Zcsl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665775	ILMN_288891	FTSJD2	NM_001014031.1	NM_001014031.1		309656	62078792	NM_001014031.1	Ftsjd2	NP_001014053.1	ILMN_1650366	0006940039	S	2749	GGGACCTTAGAGGACGTATCCTTGTGGAACTCTGCTGCCTGAGAGCTGAC	20	+	8013418-8013467	20p12	Rattus norvegicus FtsJ methyltransferase domain containing 2 (Ftsjd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	LRRG00129	LRRG00129
Rattus norvegicus	RefSeq	GI_62655435-S	ILMN_268334	ST8SIA4	XM_001071501.1	XM_001071501.1		116696	109487546	XM_001071501.1	St8sia4	XP_001071501.1	ILMN_1356293	0005900541	S	718	CCCACGATCTGCATAGCCTCCTGCCTGAAGTTTCACCAATGAAAAACCGC				9q36	PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 (St8sia4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence TAS]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence TAS]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655433-S	ILMN_268334	ST8SIA4	XM_001071501.1	XM_001071501.1		116696	109487546	XM_001071501.1	St8sia4	XP_001071501.1	ILMN_1368765	0006350138	S	1752	GTGGGGCAGCCACTGTAATGCCAAGCACACTGGAAGAGGAACCCAAGAGC				9q36	PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 (St8sia4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence TAS]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence TAS]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644144-S	ILMN_282932	CTTNBP2NL_PREDICTED	XM_001066527.1	XM_001066527.1		310760	109467339	XM_001066527.1	Cttnbp2nl_predicted	XP_001066527.1	ILMN_1353445	0005360497	S	4666	AGAGAAGCTGTTACTGGTCAGCAGAATCTATGATGCGCTAGGTGTGGCAC				2q34	PREDICTED: Rattus norvegicus CTTNBP2 N-terminal like (predicted) (Cttnbp2nl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655453-S	ILMN_70392	LOC503268	XM_578803.1	XM_578803.1		503268	62655453	XM_578803.1	LOC503268	XP_578803.1	ILMN_1374907	0003060020	S	985	GGCTGGGGTGGGTGGTCCAGGGTTTTTCATTCTTTGGAGGTCATGTAGAC					PREDICTED: Rattus norvegicus similar to UDP glycosyltransferase 1 family polypeptide A11 (LOC503268), mRNA.					
Rattus norvegicus	RefSeq	GI_62664994-S	ILMN_282878	FBXW9	XM_001065809.1	XM_001065809.1		288921	109508547	XM_001065809.1	Fbxw9	XP_001065809.1	ILMN_1370150	0001230086	S	1601	CACCTGTGCCTGTGGGTTGACATTTCTAGTTTTAGCGACCAAGGGGGCTG				19q11	PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 9 (Fbxw9), mRNA.					
Rattus norvegicus	RefSeq	GI_11968121-S	ILMN_297568	PLLP	NM_022533.1	NM_022533.1		64364	11968121	NM_022533.1	Pllp	NP_071978.1	ILMN_1369971	0001850519	S	1327	CCCAGGCTGCTGATTAGACACAGGGGACTTCCAAGGAGGGAGAGAGGGAA	19	+	10775985-10776034	19p12	Rattus norvegicus plasma membrane proteolipid (plasmolipin) (Pllp), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs [goid 43218] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEP]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	Tm4sf11	Tm4sf11
Rattus norvegicus	RefSeq	GI_62642328-S	ILMN_58914	LOC368128	XM_347296.3	XM_347296.3		368128	109460143	XM_347296.3	LOC368128	XP_347297.3	ILMN_1356977	0001230487	S	1589	ATGGGCAGGAAGGCCTAAAGTCCAAGTCAGTGCAGCTCAATGGCCAGCCC	1	+	248082816-248082840:248100066-248100090	1q54	PREDICTED: Rattus norvegicus similar to Heparanase-2 (Hpa2) (LOC368128), mRNA.					
Rattus norvegicus	RefSeq	GI_62656598-S	ILMN_58137	RGD1309400_PREDICTED	XM_213403.4	XM_213403.4		287541	109488578	XM_213403.4	RGD1309400_predicted	XP_213403.3	ILMN_1365151	0002640408	S	429	AGCGAAGCAGAGAGAAGCCCAGCAACAGCAACTGCAGGCACTGATAGCAG	10	+	64651709-64651758	10q25	PREDICTED: Rattus norvegicus hypothetical LOC287541 (predicted) (RGD1309400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642814-S	ILMN_62392	TNPO1	XM_219500.4	XM_219500.4		309126	109464307	XM_219500.4	Tnpo1	XP_219500.3	ILMN_1355649	0005550347	S	4240	ACACTGTATTGGCGCATGTTGGTGGCCCTCTGTGTCCTAGGCTTGTGCAC	2	-	29481402-29481451	2q12	PREDICTED: Rattus norvegicus transportin 1 (Tnpo1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663438-S	ILMN_54755	LY86_PREDICTED	XM_225636.4	XM_225636.4		291359	109504839	XM_225636.4	Ly86_predicted	XP_225636.4	ILMN_1358738	0001570541	S	542	CATGGCCTGCAAGAAAATGCACAGGAAACTCAGCCTCAGGGAACCCCAAG	17	-	33667976-33668025	17p12	PREDICTED: Rattus norvegicus lymphocyte antigen 86 (predicted) (Ly86_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650180-S	ILMN_68043	RGD1307059_PREDICTED	XM_233720.4	XM_233720.4		313774	109475938	XM_233720.4	RGD1307059_predicted	XP_233720.4	ILMN_1364966	0002680121	S	983	GTATTGAGTCCTTGTGTCACCGTCATACGTCCCTGGAGGCTGTGTCAGGC	5	+	172804745-172804772:172804899-172804920	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110035L05 (predicted) (RGD1307059_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658199-S	ILMN_278625	ZDHHC8	NM_001039021.1	NM_001039021.1		303796	84781742	NM_001039021.1	Zdhhc8	NP_001034110.1	ILMN_1362931	0007100270	S	2169	TCCTACTCGGGCTCCAAGGCTGTCGCCTTCATCCACACGGACCTTCCGGA	11	+	84759483-84759532	11q23	Rattus norvegicus zinc finger, DHHC domain containing 8 (Zdhhc8), mRNA.		The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717962	ILMN_57930	LOC503313	XM_578848.1	XM_578848.1		503313	62717962	XM_578848.1	LOC503313	XP_578848.1	ILMN_1650912	0006550408	S	7	CCTGATGGATGTCAGATCCCCTTGAACTCCCTCTTTCTCGATTCCGTGGG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503313), mRNA.					
Rattus norvegicus	RefSeq	GI_6978764-S	ILMN_284979	DLX5	NM_012943.1	NM_012943.1		25431	6978764	NM_012943.1	Dlx5	NP_037075.1	ILMN_1374252	0006400372	S	1029	CCTCCGGGACGCTTTATTAGATGGGCTACTCTCTCTTGCTCAGTTTTGGG	4	-	31778811-31778841:31778842-31778860	4q13	Rattus norvegicus distal-less homeobox 5 (Dlx5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IMP]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	RDLX	RDLX
Rattus norvegicus	RefSeq	GI_62665110-S	ILMN_285008	LOC498933	NM_001025764.1	NM_001025764.1		498933	71043911	NM_001025764.1	LOC498933	NP_001020935.1	ILMN_1373315	0000510079	S	495	GCTTATAGACCACGCCACCTGTCCCCCAGTTCAAAGCCCAAAAGGCCAGG	19	+	30536092-30536119:30536922-30536943	19q11	Rattus norvegicus LOC498933 (LOC498933), mRNA.				MGC116194	MGC116194
Rattus norvegicus	RefSeq	GI_62639331-S	ILMN_291483	LOC499124	XM_001078842.1	XM_001078842.1		499124	109461619	XM_001078842.1	LOC499124	XP_001078842.1	ILMN_1359224	0004480717	S	3357	GAGCATTCACGTTGGCGAGAGACCCTATGGCTGTGAAGAGTGTGGCAAGG					PREDICTED: Rattus norvegicus mouse zinc finger protein 14-like (LOC499124), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639444-S	ILMN_291483	LOC499124	XM_001078842.1	XM_001078842.1		499124	109461619	XM_001078842.1	LOC499124	XP_001078842.1	ILMN_1369939	0000840039	S	2316	CAGACTGCTCTCACAGCTCACACAGCATCAGAGTATCCACGCTGGGGAGA					PREDICTED: Rattus norvegicus mouse zinc finger protein 14-like (LOC499124), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577850-S	ILMN_274905	OLR1196	NM_001000435.1	NM_001000435.1		300524	47577850	NM_001000435.1	Olr1196	NP_001000435.1	ILMN_1349204	0006040164	S	419	ATTTACTCCTTTTACTAGGCGTCTATGTGATGGGTTTCTCTGGGGCCATG	8	+	39045156-39045205	8q21	Rattus norvegicus olfactory receptor 1196 (Olr1196), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1196; ratchr8-39053504-39054436_ORF	Olr1196; ratchr8-39053504-39054436_ORF
Rattus norvegicus	RefSeq	GI_21955256-S	ILMN_297251	SLC38A3	NM_145776.1	NM_145776.1		252919	21955256	NM_145776.1	Slc38a3	NP_665719.1	ILMN_1358848	0006040433	S	2170	CCAGAAATCCCTGCTGTTGGACCTTCACCACTCCTGGGGAGGCTGGGACT	8	-	112898525-112898574	8q32	Rattus norvegicus solute carrier family 38, member 3 (Slc38a3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of asparagine, alpha-aminosuccinamic acid, into, out of, within or between cells [goid 6867] [evidence ISS]; The directed movement of asparagine, alpha-aminosuccinamic acid, into, out of, within or between cells [goid 6867] [evidence IDA]; The directed movement of glutamine, 2-amino-4-carbamoylbutanoic acid, into, out of, within or between cells [goid 6868] [evidence ISS]; The directed movement of glutamine, 2-amino-4-carbamoylbutanoic acid, into, out of, within or between cells [goid 6868] [evidence IDA]; The directed movement of L-alanine, the levorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 15808] [evidence ISS]; The directed movement of L-alanine, the levorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 15808] [evidence IEA]; The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of, within or between cells [goid 15817] [evidence ISS]; The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of, within or between cells [goid 15817] [evidence IDA]	Catalysis of the transfer of L-histidine from one side of a membrane to the other. L-histidine is 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 5290] [evidence ISS]; Catalysis of the transfer of L-histidine from one side of a membrane to the other. L-histidine is 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 5290] [evidence IDA]; Catalysis of the transfer of L-alanine from one side of a membrane to the other. L-alanine, the levorotatory isomer of 2-aminopropanoic acid [goid 15180] [evidence ISS]; Catalysis of the transfer of L-alanine from one side of a membrane to the other. L-alanine, the levorotatory isomer of 2-aminopropanoic acid [goid 15180] [evidence IEA]; Catalysis of the transfer of L-asparagine from one side of a membrane to the other. L-asparagine is the levorotatory isomer of alpha-aminosuccinamic acid [goid 15182] [evidence ISS]; Catalysis of the transfer of L-asparagine from one side of a membrane to the other. L-asparagine is the levorotatory isomer of alpha-aminosuccinamic acid [goid 15182] [evidence IDA]; Catalysis of the transfer of L-glutamine from one side of a membrane to the other. L-glutamine is 2-amino-4-carbamoylbutanoic acid [goid 15186] [evidence ISS]; Catalysis of the transfer of L-glutamine from one side of a membrane to the other. L-glutamine is 2-amino-4-carbamoylbutanoic acid [goid 15186] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	MGC93143; Sn1; Nat1	MGC93143; Sn1; Nat1
Rattus norvegicus	RefSeq	GI_62659936-S	ILMN_264168	PROX1_PREDICTED	XM_001067440.1	XM_001067440.1		305066	109499277	XM_001067440.1	Prox1_predicted	XP_001067440.1	ILMN_1367963	0002340270	S	2609	GTGTGGGGGAGGCATGGATACTTTGTGATGTCAGCTGGTGGTCCCTGCTC				13q27	PREDICTED: Rattus norvegicus prospero-related homeobox 1 (predicted) (Prox1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652977-S	ILMN_50629	LRRK2	XM_235581.4	XM_235581.4		300160	109481159	XM_235581.4	Lrrk2	XP_235581.4	ILMN_1374948	0002340438	S	7345	GGAGGCCACATCTTACTCCTGGATCTTTCTACACGGCGAGTCATCCGCAC	7	+	130264514-130264563	7q35	PREDICTED: Rattus norvegicus leucine-rich repeat kinase 2 (Lrrk2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The external (cytoplasmic face) of the mitochondrial outer membrane [goid 32473] [evidence IEA]; The external (cytoplasmic face) of the mitochondrial outer membrane [goid 32473] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IEA]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43068] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43068] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62078638-S	ILMN_263491	TRIM42	XM_001069825.1	XM_001069825.1		301106	109485220	XM_001069825.1	Trim42	XP_001069825.1	ILMN_1362550	0004780138	S	1414	TGGTAACACCAGATGGGCGTGGGAAGAACCGAGCTAAGTGGGGACTGCTG					PREDICTED: Rattus norvegicus tripartite motif-containing 42 (Trim42), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653145-S	ILMN_268957	RGD1566264_PREDICTED	XM_001068981.1	XM_001068981.1		366999	109483026	XM_001068981.1	RGD1566264_predicted	XP_001068981.1	ILMN_1352794	0005670047	S	319	GCCCAGGCCCCTGTGAGGGTCCCATATCCTGTCAATGTGAAGACAAATAG				7q36	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1566264_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648500-S	ILMN_49514	JPH1_PREDICTED	XM_232578.3	XM_232578.3		297748	62648500	XM_232578.3	Jph1_predicted	XP_232578.3	ILMN_1358279	0002850112	S	3570	TCCCCTGATAGCACAGGAGAGGACCACATGCTTCATCACCTACAGGGTAG				5q11	PREDICTED: Rattus norvegicus junctophilin 1 (predicted) (Jph1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24899632-S	ILMN_301813	SLC12A8	NM_153625.1	NM_153625.1		266733	24899632	NM_153625.1	Slc12a8	NP_705889.1	ILMN_1369249	0000610609	S	2278	CCCACCACAGCCTTGGACACCGGAAATCACATTCCAGACACTAGGCATGG	11	-	68934207-68934256	11q22	Rattus norvegicus solute carrier family 12 (potassium/chloride transporters), member 8 (Slc12a8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	Ccc9	Ccc9
Rattus norvegicus	RefSeq	GI_62662204-S	ILMN_289148	OXNAD1_PREDICTED	XM_001057360.1	XM_001057360.1		306270	109503725	XM_001057360.1	Oxnad1_predicted	XP_001057360.1	ILMN_1363468	0005900110	S	1741	CCTGAGCCAGGGCTGTTTTCTGGGACCCCGTCTTTCTGGAATTTTGAGTC				16p16	PREDICTED: Rattus norvegicus oxidoreductase NAD-binding domain containing 1 (predicted) (Oxnad1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643328-S	ILMN_65488	CCDC39_PREDICTED	XM_227031.4	XM_227031.4		310315	109464682	XM_227031.4	Ccdc39_predicted	XP_227031.4	ILMN_1351003	0005270324	S	2762	TCCTCAATCAGGTCGCTGGAGGACTCAATTCCCATCTCTCCACCCACAGC	2	-	120118294-120118333:120119301-120119310	2q25	PREDICTED: Rattus norvegicus coiled-coil domain containing 39 (predicted) (Ccdc39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655536-S	ILMN_276054	MYOM1	XM_001054975.1	XM_001054975.1		316740	109487633	XM_001054975.1	Myom1	XP_001054975.1	ILMN_1370919	0004670154	S	4935	CGGCAAGTACGGGCTGGTGGTGAAGAACAAATACGGCTCGGAGACCAGTG				9q38	PREDICTED: Rattus norvegicus myomesin 1 (skelemin) 185kDa, transcript variant 2 (Myom1), mRNA.	The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62718576-S	ILMN_69589	LOC501425	XM_576835.1	XM_576835.1		501425	62718576	XM_576835.1	LOC501425	XP_576835.1	ILMN_1357944	0003520687	S	7	CCAGTTATCAACACTGAACACAGATTACTCACCATGGACATCAGGCTCAG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC501425), mRNA.					
Rattus norvegicus	RefSeq	GI_16758133-S	ILMN_292258	DCTN4	NM_053404.1	NM_053404.1		84428	16758133	NM_053404.1	Dctn4	NP_445856.1	ILMN_1359633	0004780398	S	2257	GGCTCGCTCCGTGTAACTCTCGCTGGCCTGAACTCAACCTGCTAGGACTA	18	+	56503570-56503619	18q12.1	Rattus norvegicus dynactin 4 (Dctn4), mRNA.	Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	MGC114292	MGC114292
Rattus norvegicus	RefSeq	GI_29789278-S	ILMN_282528	SLC13A1	NM_031651.1	NM_031651.1		58980	29789278	NM_031651.1	Slc13a1	NP_113839.1	ILMN_1370715	0000070133	S	1918	TGCAGAGCGTGCCCCACACATGCCCCTGTCAACCTCATAAGACAGAGTTC	4	-	50460413-50460462	4q22	Rattus norvegicus solute carrier family 13 (sodium/sulfate symporters), member 1 (Slc13a1), mRNA.	Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IPI]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IDA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + Na+(out) = sulfate(in) + Na+(in) [goid 15382] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652732-S	ILMN_263318	DMC1H_PREDICTED	XM_001075521.1	XM_001075521.1		362960	109482462	XM_001075521.1	Dmc1h_predicted	XP_001075521.1	ILMN_1374386	0005340152	S	86	CGTAAAGGATTCACCTTGAAAATCTCGGGGAGGCTGTGGGTTCGAGTGGG				7q34	PREDICTED: Rattus norvegicus disrupted meiotic cDNA 1 homolog (yeast) (predicted) (Dmc1h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652784-S	ILMN_263318	DMC1H_PREDICTED	XM_001075521.1	XM_001075521.1		362960	109482462	XM_001075521.1	Dmc1h_predicted	XP_001075521.1	ILMN_1369203	0005550593	S	989	CCGGGAGCAACTATGACCTTCCAGGCTGATCCCAAAAAACCCATTGGCGG				7q34	PREDICTED: Rattus norvegicus disrupted meiotic cDNA 1 homolog (yeast) (predicted) (Dmc1h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19923091-S	ILMN_48433	MGLL	NM_138502.2	NM_138502.2		29254	82524631	NM_138502.2	Mgll	NP_612511.1	ILMN_1369012	0001450088	S	698	ACAACTCCGACCCACTCATCTGCCACGCAGGGGTGAAGGTATGCTTTGGC	4	+	122920140-122920189	4q34	Rattus norvegicus monoglyceride lipase (Mgll), mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]		Interacting selectively with a lipid [goid 8289] [evidence IMP]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence TAS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol [goid 47372] [evidence IEA]	MGC124942	MGC124942
Rattus norvegicus	RefSeq	GI_62649688	ILMN_65156	LOC500549	XM_575911.1	XM_575911.1		500549	62649688	XM_575911.1	LOC500549	XP_575911.1	ILMN_1650158	0006350524	S	2461	GGTGAGAAGCCACATAAGTGTGCGGACTGTGGAAAGTGCTTCAGCGAGCG				5q36	PREDICTED: Rattus norvegicus similar to Zfp31 protein (LOC500549), mRNA.					
Rattus norvegicus	RefSeq	GI_62658990-S	ILMN_59646	LOC498191	XM_573408.1	XM_573408.1		498191	62658990	XM_573408.1	LOC498191	XP_573408.1	ILMN_1374044	0006940091	S	0	GTGTTTCTGTCAGTTCCGGCTGTTTGTTCGGGAAGTGGATCCGCCGCTGC					PREDICTED: Rattus norvegicus similar to RAB35, member RAS oncogene family (LOC498191), mRNA.					
Rattus norvegicus	RefSeq	GI_62718151-S	ILMN_68286	LOC302264	XM_217554.3	XM_217554.3		302264	62718151	XM_217554.3	LOC302264	XP_217554.3	ILMN_1365184	0005420037	S	714	CAAACATCCTGAATGAAAACACCCCTTGAGAGACAACTTGGGGGACGGCC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC302264), mRNA.					
Rattus norvegicus	RefSeq	GI_62656847-S	ILMN_268033	RGD1564550_PREDICTED	XM_001081254.1	XM_001081254.1		287623	109491658	XM_001081254.1	RGD1564550_predicted	XP_001081254.1	ILMN_1368791	0003190706	S	254	CCAGTAAGATTAGAGCCATGCGCCGCCACCTCACCAAACCTGAAGAGAAG				10q26	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (predicted) (RGD1564550_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39930496-S	ILMN_58339	SLC5A3	NM_053715.2	NM_053715.2		114507	82617597	NM_053715.2	Slc5a3	NP_446167.2	ILMN_1362278	0004850184	S	2085	GACTCGATGGACGAGGAGGCCGTTTGTTTGCAGATGTTAGAGGAGACCCC	11	+	32065359-32065408	11q11	Rattus norvegicus solute carrier family 5 (inositol transporters), member 3 (Slc5a3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The directed movement of myo-inositol into, out of, within or between cells. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms [goid 15798] [evidence IEA]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Smit	Smit
Rattus norvegicus	RefSeq	GI_62649334-S	ILMN_69334	RGD1563440_PREDICTED	XM_216459.4	XM_216459.4		298301	109475219	XM_216459.4	RGD1563440_predicted	XP_216459.4	ILMN_1349206	0005910309	S	3691	GCATCCGTGTGTATCTATGCAGCCCAGGCCCAGGATCAAATTATGGCCAG	5	-	127757945-127757994	5q34	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1563440_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658245-S	ILMN_57958	TOP3B_PREDICTED	XM_213564.4	XM_213564.4		287930	109493652	XM_213564.4	Top3b_predicted	XP_213564.3	ILMN_1363550	0005570711	S	2776	GAGACCTCCAGGAAAGCCCAACCCCAGGCGGCCAAAAGACAAGATGTCAG	11	-	86117068-86117117	11q23	PREDICTED: Rattus norvegicus topoisomerase (DNA) III beta (predicted) (Top3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742861-S	ILMN_266334	ADFP	NM_001007144.1	NM_001007144.1		298199	55742861	NM_001007144.1	Adfp	NP_001007145.1	ILMN_1357171	0001980600	S	1709	TGCTCCTGTGTGGTCCGAGCAGGCTTCATCACTGTTTCCCTCAAGGCATG	5	-	105718571-105718620	5q32	Rattus norvegicus adipose differentiation related protein (Adfp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence IEA]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence TAS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Adrp; MGC94591	Adrp; MGC94591
Rattus norvegicus	RefSeq	GI_62645179-S	ILMN_283099	BBS5_PREDICTED	XM_001057589.1	XM_001057589.1		362142	109470014	XM_001057589.1	Bbs5_predicted	XP_001057589.1	ILMN_1373549	0001170048	S	1005	GCTTGCCATAGAGAAGCTGAAGGACGGAGTCACACTACAGGGGCTTTGGG				3q21	PREDICTED: Rattus norvegicus Bardet-Biedl syndrome 5 homolog (human) (predicted) (Bbs5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485178-S	ILMN_59913	CLCF1	NM_207615.2	NM_207615.2		365395	76563943	NM_207615.2	Clcf1	NP_997498.2	ILMN_1355034	0003940551	S	576	ACAGTCACCTCCTGTGTTACTTGCGTGGCCTCAACCGTCAAGCTGCCACA	1	+	206805044-206805093	1q42	Rattus norvegicus cardiotrophin-like cytokine factor 1 (Clcf1), mRNA.		Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]	MGC112574; Bsf3; Clc; NNT-1	MGC112574; Bsf3; Clc; NNT-1
Rattus norvegicus	RefSeq	GI_62665040-S	ILMN_51196	PRKACA	XM_341661.2	XM_341661.2		25636	62665040	XM_341661.2	Prkaca	XP_341662.2	ILMN_1349219	0002680286	S	2063	AGGTGGGGAGCTGCTGGGGATATGACCCCGTTTATCCCTGTGTTTATCCC				19q11	PREDICTED: Rattus norvegicus protein kinase, cAMP-dependent, catalytic, alpha (Prkaca), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 6281762] [evidence EXP]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds [goid 43457] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm [goid 46827] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51966] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of cAMP [goid 4691] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of cAMP [goid 4691] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of cAMP [goid 4691] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of cAMP [goid 4691] [pmid 6281762] [evidence EXP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62821762-S	ILMN_52248	INEXA	NM_019128.3	NM_019128.3		24503	62821762	NM_019128.3	Inexa	NP_062001.1	ILMN_1368303	0003390288	S	4192	TATGCACACTTCTCCCCCACCTCAAGAAGGCAGGCTGGAAAGTCAGCTCT	1	+	252340609-252340658	1q54	Rattus norvegicus internexin, alpha (Inexa), mRNA.				Intlaa; Nf66; Ina	Intlaa; Nf66; Ina
Rattus norvegicus	RefSeq	GI_62645815-S	ILMN_53995	RGD1562199_PREDICTED	XM_230571.4	XM_230571.4		311404	109468762	XM_230571.4	RGD1562199_predicted	XP_230571.3	ILMN_1357223	0005130035	S	3336	GAGTACACGCTGACGTGGTAGCCCTGTGGTTCCGATCCTCTAGCTCTGTT	3	+	114614995-114615044	3q36	PREDICTED: Rattus norvegicus similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (predicted) (RGD1562199_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659377-S	ILMN_270849	RGD1311960_PREDICTED	XM_001059693.1	XM_001059693.1		305095	109498612	XM_001059693.1	RGD1311960_predicted	XP_001059693.1	ILMN_1368850	0000780056	S	2154	GTTAGAAGGTGTAGAGAACGCCAACGCGCGCGCTCTGCTGGGCAAGTTCA				13q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110063G11 (predicted) (RGD1311960_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658090-S	ILMN_268819	RGD1563387_PREDICTED	XM_001067018.1	XM_001067018.1		501779	109494382	XM_001067018.1	RGD1563387_predicted	XP_001067018.1	ILMN_1365714	0000060563	S	633	AGGGGGTACCAGCTCCCCACCTTCCTTGCTGACCATTATCTACGTGAAAA				11q21	PREDICTED: Rattus norvegicus similar to antigen identified by monoclonal antibody MRC OX-2 receptor (predicted) (RGD1563387_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649808-A	ILMN_287440	DHDDS	NM_001011978.1	NM_001011978.1		298541	58865531	NM_001011978.1	Dhdds	NP_001011978.1	ILMN_1376435	0000730017	S	1077	TTGAACCTCAAGCGGGCTGACTGGCTGGCACTTTGGGGCACTGCATCTGC	5	-	152718599-152718648	5q36	Rattus norvegicus dehydrodolichyl diphosphate synthase (Dhdds), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981709-S	ILMN_288043	YWHAH	NM_013052.1	NM_013052.1		25576	6981709	NM_013052.1	Ywhah	NP_037184.1	ILMN_1373292	0001500600	S	1317	ACCCTCTCACCCCTTCTTTCAGCTAATGGAAACTGACACACGACAACTTG	14	-	83448715-83448764	14q21	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide (Ywhah), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6713] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6713] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catecholamines [goid 42069] [evidence NAS]; Any series of molecular signals generated as a consequence of a glucocorticoid binding to its receptor [goid 42921] [evidence ISS]; Any series of molecular signals generated as a consequence of a glucocorticoid binding to its receptor [goid 42921] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of dendrite morphogenesis [goid 50774] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of dendrite morphogenesis [goid 50774] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a glucocorticoid receptor [goid 35259] [evidence ISS]; Interacting selectively with a glucocorticoid receptor [goid 35259] [evidence IEA]	14-3-3e; MGC93547	14-3-3e; MGC93547
Rattus norvegicus	RefSeq	GI_31543528-S	ILMN_298931	SIRPA	NM_013016.2	NM_013016.2		25528	31543528	NM_013016.2	Sirpa	NP_037148.2	ILMN_1360759	0005420687	S	3692	CCCCAAGCCTATGTATGGAACCCTGGTACGAAAGCGCCCTGTGAGGAGTG	3	+	117247676-117247725	3q36	Rattus norvegicus signal-regulatory protein alpha (Sirpa), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence ISS]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Interacting selectively with a phosphorylated amino acid residue within a protein [goid 45309] [evidence ISS]	SHPS-1; Bit	SHPS-1; Bit
Rattus norvegicus	RefSeq	GI_62659789-S	ILMN_291248	ADSS_PREDICTED	XM_001059694.1	XM_001059694.1		289276	109499126	XM_001059694.1	Adss_predicted	XP_001059694.1	ILMN_1355936	0002030670	S	2252	GCATACTGTTGTTTCTAAGACCGTGGGTTTGCTTCCAGCATTCCATCTGC				13q25	PREDICTED: Rattus norvegicus adenylosuccinate synthetase, non muscle (predicted) (Adss_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786159-S	ILMN_299492	SLC22A8	NM_031332.1	NM_031332.1		83500	13786159	NM_031332.1	Slc22a8	NP_112622.1	ILMN_1358346	0000670064	S	1793	AGTACCCTTCTGGAGTTCCTTGGGCACCTTGGGGGTTGGGGAAAGCCCTA	1	+	211287232-211287281	1q43	Rattus norvegicus solute carrier family 22 (organic anion transporter), member 8 (Slc22a8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methotrexate stimulus. Methotrexate is 4-amino-10-methylformic acid, a folic acid analogue that is a potent competitive inhibitor of dihydrofolate reductase [goid 31427] [evidence IEP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence ISS]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]	Roct; OCT3; MGC93369	Roct; OCT3; MGC93369
Rattus norvegicus	RefSeq	GI_62639052-A	ILMN_287585	ARHGEF1	NM_021694.3	NM_021694.3		60323	62751752	NM_021694.3	Arhgef1	NP_067726.3	ILMN_1376334	0002360193	S	2937	CCCAGGGGCTTTGAGAAGAGGAGATTGGCTGAACTTGATAGTGGACCTGC	1	+	80226251-80226300	1q21	Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 1 (Arhgef1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]	Lsc; MGC108950	Lsc; MGC108950
Rattus norvegicus	RefSeq	GI_14389306-S	ILMN_295633	PRAP1	NM_031669.1	NM_031669.1		60574	14389306	NM_031669.1	Prap1	NP_113857.1	ILMN_1355793	0006660736	S	430	CCAGAATGAAGAAGTGCCCCAGTCTAGGCCCATCCTATATCGTCAGGTGC	1	+	199893218-199893267	1q41	Rattus norvegicus proline-rich acidic protein 1 (Prap1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			Upa	Upa
Rattus norvegicus	RefSeq	GI_62653909-S	ILMN_53401	MYO5C_PREDICTED	XM_236411.4	XM_236411.4		315820	109483638	XM_236411.4	Myo5c_predicted	XP_236411.4	ILMN_1367044	0003120035	S	3400	GCAGTCACAGAAGCGGGAGATGAGAGAACGGATGTCAGAGGTCACCAAGC	8	+	80098459-80098484:80098641-80098664	8q24	PREDICTED: Rattus norvegicus myosin VC (predicted) (Myo5c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666527-S	ILMN_58071	LOC501519	XM_576920.1	XM_576920.1		501519	62666527	XM_576920.1	LOC501519	XP_576920.1	ILMN_1356971	0004540167	S	733	TCATCCTGATTCACTGTTGCAGAGTCAGTCCAATACCTTGCCAACTTTAG					PREDICTED: Rattus norvegicus similar to Ac1-163 (LOC501519), mRNA.					
Rattus norvegicus	RefSeq	GI_62656360-S	ILMN_270080	ZMYND15_PREDICTED	XM_001079829.1	XM_001079829.1		287457	109491157	XM_001079829.1	Zmynd15_predicted	XP_001079829.1	ILMN_1367806	0006040647	S	2064	CTTCCATTTGGTCTACAAGCCACCCCAAGGCGGCACAGTTCGCTCAGCTC				10q24	PREDICTED: Rattus norvegicus zinc finger, MYND domain containing 15 (predicted) (Zmynd15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657941-S	ILMN_268980	IQCB1_PREDICTED	XM_001062923.1	XM_001062923.1		303915	109494384	XM_001062923.1	Iqcb1_predicted	XP_001062923.1	ILMN_1367093	0006380136	S	1874	GAAGCTCGGAGAGGAACCAGGGGATGAGATGGATGTTCCAAAGGACGAGC				11q22	PREDICTED: Rattus norvegicus IQ calmodulin-binding motif containing 1 (predicted) (Iqcb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394424	ILMN_265494	TCEB3	NM_017103.1	NM_017103.1		25562	8394424	NM_017103.1	Tceb3	NP_058799.1	ILMN_1650016	0005910438	S	3324	GTGCTGTGAAGCTTGCTCGTGTTGGACAGGAAAGGTGCTGACGTGGCCAG	5	-	154783872-154783921	5q36	Rattus norvegicus transcription elongation factor B (SIII), polypeptide 3 (Tceb3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation [goid 8023] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IDA]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence IDA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	El; MGC93501	El; MGC93501
Rattus norvegicus	RefSeq	GI_62414244-S	ILMN_276257	PCDHB13	XM_001055698.1	XM_001055698.1		307489	109506481	XM_001055698.1	Pcdhb13	XP_001055698.1	ILMN_1371144	0004480239	S	2063	TCCCCGAGGTAGCGCAGGACTCCACGAAGGATGTTGAAGATACGCTCACC	18	+	30252475-30252524	18p11	PREDICTED: Rattus norvegicus protocadherin beta 13 (Pcdhb13), mRNA.					
Rattus norvegicus	RefSeq	GI_62078441-S	ILMN_295591	FAM44B	NM_001013854.1	NM_001013854.1		287173	62078441	NM_001013854.1	Fam44b	NP_001013876.1	ILMN_1369550	0002060438	S	1141	GACCGGTGGGAGCAGCTGTCTGATGGTGGGCTTTGATATGCTGGAGTTAC	10	+	16261419-16261468	10q12	Rattus norvegicus family with sequence similarity 44, member B (Fam44b), mRNA.					
Rattus norvegicus	RefSeq	GI_62657652-S	ILMN_271654	LOC498063	NM_001017483.1	NM_001017483.1		498063	62945321	NM_001017483.1	LOC498063	NP_001017483.1	ILMN_1355667	0006900707	S	2355	ATGGGGTGGGTAGCCGAGGTCCCAGGTCTCTTCCTGTGAATGGTCAGCTA	11	-	32310904-32310953	11q11	Rattus norvegicus similar to RIKEN cDNA 4930563D23 (LOC498063), mRNA.					
Rattus norvegicus	RefSeq	GI_61556812-S	ILMN_269535	RPP40	NM_001013055.1	NM_001013055.1		291071	61556812	NM_001013055.1	Rpp40	NP_001013073.1	ILMN_1350818	0001240725	S	772	AATGCCCTGGAGTTCTTCGACTGGCTTGGTGCCGTCTTCTGCAACGCGGA	17	+	35256213-35256262	17p12	Rattus norvegicus ribonuclease P 40 subunit (human) (Rpp40), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108849	MGC108849
Rattus norvegicus	RefSeq	GI_62658019-S	ILMN_274153	LOC684506	XM_001066197.1	XM_001066197.1		684506	109494446	XM_001066197.1	LOC684506	XP_001066197.1	ILMN_1362011	0006180546	S	1922	CGACTGTAACGCTGAGGAAGCCCTTTTGCAGACTCTCAATGAGGAGATGC					PREDICTED: Rattus norvegicus similar to nuclear cap binding protein subunit 2, transcript variant 3 (LOC684506), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641793	ILMN_58823	ZFP162	XM_342001.2	XM_342001.2		117855	62641793	XM_342001.2	Zfp162	XP_342002.2	ILMN_1649746	0005220494	S	1297	GGTGGCCCCCACAGTTTCCCACACCCATTACCCAGCCTGACAGGTATGAT				1q43	PREDICTED: Rattus norvegicus zinc finger protein 162 (Zfp162), mRNA.					
Rattus norvegicus	RefSeq	GI_13928801-S	ILMN_284755	WISP2	NM_031590.1	NM_031590.1		29576	13928801	NM_031590.1	Wisp2	NP_113778.1	ILMN_1370066	0001580059	S	1593	AGCACTCGCAAAACAGGAAGGCTCCACACCTCTAACAGCCAGGGCCTTTC	3	+	154760183-154760232	3q42	Rattus norvegicus WNT1 inducible signaling pathway protein 2 (Wisp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]	CCN5	CCN5
Rattus norvegicus	RefSeq	GI_62639232-S	ILMN_67558	LOC499112	XM_574407.1	XM_574407.1		499112	62639232	XM_574407.1	LOC499112	XP_574407.1	ILMN_1365022	0001090300	S	714	GCCAAGGGCTGGGTGGAATGAAGCAGGCCCAGAAAGAGATGGACACTCGA				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38944 (LOC499112), mRNA.					
Rattus norvegicus	RefSeq	GI_20514775-S	ILMN_283114	GUCY2G	NM_139042.1	NM_139042.1		245708	20514775	NM_139042.1	Gucy2g	NP_620611.1	ILMN_1356623	0005720731	S	3241	GGCAAAGATGGCTTCGCTGTCCCGCTCCCCGAGTTTACTGAGGAAGAAGC	1	-	261501074-261501123	1q55	Rattus norvegicus guanylate cyclase 2g (Gucy2g), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence TAS]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence ISS]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA]	ksGC	ksGC
Rattus norvegicus	RefSeq	GI_62649445-S	ILMN_285226	RGD1310351_PREDICTED	XM_001064193.1	XM_001064193.1		298425	109476954	XM_001064193.1	RGD1310351_predicted	XP_001064193.1	ILMN_1365110	0003710286	S	1493	CCGAAAGCAACAGGCCTCCAGAGACCACAGATGAGGAGCAAGTACAGAAC				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732418C07 (predicted), transcript variant 3 (RGD1310351_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392934-S	ILMN_294784	ATP2A2	NM_017290.1	NM_017290.1		29693	8392934	NM_017290.1	Atp2a2	NP_058986.1	ILMN_1375142	0002940554	S	5391	CAACCTAGGCCTCCGGTCCTAACTTCAGTTGTTCTCCTCGGTGTGCAGCC	12	+	35316038-35316087	12q16	Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 (Atp2a2), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IDA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence TAS]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence TAS]; Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation [goid 6984] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with a lutropin-choriogonadotropic hormone receptor [goid 31775] [evidence IPI]; Interacting selectively with S100 alpha protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48155] [evidence IEA]; Interacting selectively with S100 alpha protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48155] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	SercaII; Serca2	SercaII; Serca2
Rattus norvegicus	RefSeq	GI_18959243-S	ILMN_269859	HEPH	NM_133304.1	NM_133304.1		117240	18959243	NM_133304.1	Heph	NP_579838.1	ILMN_1371544	0006200112	S	4096	GTCATGAGTACCTAGAACCCCTGGAACCAGAAGCACCTGTAAAAGAGTCC	X	+	84138571-84138620	Xq31	Rattus norvegicus hephaestin (Heph), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865655-A	ILMN_279425	LCP1	NM_001012044.1	NM_001012044.1		306071	58865655	NM_001012044.1	Lcp1	NP_001012044.1	ILMN_1376765	0001410609	S	3283	CATGTAGCCTCAGATGATGTTTGCCCATCTGCCTCCACGAAGTAAGGATA	15	+	56091764-56091813	15q11	Rattus norvegicus lymphocyte cytosolic protein 1 (Lcp1), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence IEA]; An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]	The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence IEA]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657595-S	ILMN_269118	CLDN8	NM_001037774.1	NM_001037774.1		304124	83642837	NM_001037774.1	Cldn8	NP_001032863.1	ILMN_1370662	0003710465	S	1237	GTGTAAGGGAAACTGAATGGCTTTCTGATCGCCTGCTTTGCAGCCTCCAG	11	-	28420575-28420624	11q11	Rattus norvegicus claudin 8 (Cldn8), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	MGC124857	MGC124857
Rattus norvegicus	RefSeq	GI_62642784-S	ILMN_61060	LOC499513	XM_579971.1	XM_579971.1		499513	62642784	XM_579971.1	LOC499513	XP_579971.1	ILMN_1351851	0004070603	S	588	CATGCTCTGTGTGGGATGGCTCGTGTGCAGCGTAAATCTATCTCGTGTGG					PREDICTED: Rattus norvegicus LOC499513 (LOC499513), mRNA.					
Rattus norvegicus	RefSeq	GI_47575958-S	ILMN_273159	OLR931	NM_001000704.1	NM_001000704.1		404943	47575958	NM_001000704.1	Olr931	NP_001000704.1	ILMN_1353435	0004210112	S	804	GAGCAAAGGAATAGCTGTGTTCAACATTTCAGTTGCCCCTTTGTTGAACC	7	+	4367844-4367893	7q11	Rattus norvegicus olfactory receptor 931 (Olr931), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr931	Olr931
Rattus norvegicus	RefSeq	GI_62663343-S	ILMN_60193	LOC498720	XM_579863.1	XM_579863.1		498720	62663343	XM_579863.1	LOC498720	XP_579863.1	ILMN_1359294	0004050441	S	269	GTCTCTGAACGGCTTGGGAGCCAGCAGCTACAATGGGGAAGAGTGTCTGG					PREDICTED: Rattus norvegicus LOC498720 (LOC498720), mRNA.					
Rattus norvegicus	RefSeq	GI_62656450-S	ILMN_297998	LOC687381	XM_001077717.1	XM_001077717.1		687381	109490986	XM_001077717.1	LOC687381	XP_001077717.1	ILMN_1374475	0005570167	S	1247	CTATCAACCTGTACATCTCCTACCTCGGCTTCCGCTTCTATGTGGACGCG					PREDICTED: Rattus norvegicus similar to COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (LOC687381), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]	Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor) [goid 4659] [evidence IEA];  [goid 8495] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662978-S	ILMN_63157	ANKRD10	XM_341466.3	XM_341466.3		361183	109503599	XM_341466.3	Ankrd10	XP_341467.3	ILMN_1366699	0002350433	S	2052	AGCTACTCCCTGTGCAAGGAGCACCCTTACAGCAGTGTCGTGCAGACCCT	16	+	82741586-82741635	16q12.5	PREDICTED: Rattus norvegicus ankyrin repeat domain 10 (Ankrd10), mRNA.					
Rattus norvegicus	RefSeq	GI_62656171-S	ILMN_52303	LOC497915	XM_573102.1	XM_573102.1		497915	62656171	XM_573102.1	LOC497915	XP_573102.1	ILMN_1358876	0005570161	S	858	GCTCGAAAGCCCAACAGTGTAGTTATCAGGTAAGAAGGTGGCTTCCTGCC				10q22	PREDICTED: Rattus norvegicus similar to GTP-binding protein (LOC497915), mRNA.					
Rattus norvegicus	RefSeq	GI_62665201-S	ILMN_284695	ZFP90	NM_001025765.1	NM_001025765.1		498945	71043913	NM_001025765.1	Zfp90	NP_001020936.1	ILMN_1349083	0006770368	S	511	ACCCAGAGGCACCAGGAGAGTTGGAGAAGACATCTTGGGCCAGAGGCATC	19	+	36281294-36281343	19q12	Rattus norvegicus zinc finger protein 90 (Zfp90), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114532	MGC114532
Rattus norvegicus	RefSeq	GI_62665767-A	ILMN_280984	SLC19A1	NM_017299.1	NM_017299.1		29723	8394282	NM_017299.1	Slc19a1	NP_058995.1	ILMN_1376773	0006590672	S	2203	CTCTGGGATGCTCAGGACAAATCACGTCTGCCCCCAGGGCTAGTGAGGTA	20	-	11984440-11984489	20p12	Rattus norvegicus solute carrier family 19 (folate transporter), member 1 (Slc19a1), transcript variant 1, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 15884] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IDA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Catalysis of the transfer of reduced folate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8518] [evidence IDA]; Catalysis of the transfer of reduced folate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8518] [evidence IEA]; Enables the directed movement of methotrexate, 4-amino-10-methylformic acid, into, out of, within or between cells. Methotrexate is a folic acid analogue and a potent competitive inhibitor of dihydrofolate reductase [goid 15350] [evidence IDA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Catalysis of the transfer of reduced folate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8518] [evidence IEA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Catalysis of the transfer of reduced folate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8518] [evidence IEA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Catalysis of the transfer of reduced folate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8518] [evidence IEA]	MTX1; MGC93506	MTX1; MGC93506
Rattus norvegicus	RefSeq	GI_13592116-S	ILMN_285109	KLF10	NM_031135.1	NM_031135.1		81813	13592116	NM_031135.1	Klf10	NP_112397.1	ILMN_1362189	0006660112	S	2857	CCTGCAGTTCTGGGGATCCAGAGCCTTGCTTGTGTTCTGTAAGCTCTGTC	7	-	73821488-73821537	7q22	Rattus norvegicus Kruppel-like factor 10 (Klf10), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IDA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tieg	Tieg
Rattus norvegicus	RefSeq	GI_62657602-S	ILMN_58500	LOC498055	XM_573254.1	XM_573254.1		498055	62657602	XM_573254.1	LOC498055	XP_573254.1	ILMN_1363776	0002470600	S	304	GATGCTGGAGGACTTCAAGAAAGACGTGAACTCCCTTAGGGAAACACAGG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC498055), mRNA.					
Rattus norvegicus	RefSeq	GI_9507198-S	ILMN_291565	TPO	NM_019353.1	NM_019353.1		54314	9507198	NM_019353.1	Tpo	NP_062226.1	ILMN_1370074	0003930674	S	3038	AGCCTGAAAGCGTTGAGAGAAGCTAGCATAGACTCCAGATCCTTCCAGAC	6	-	47954998-47955047	6q16	Rattus norvegicus thyroid peroxidase (Tpo), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: iodide + H2O2 = iodine + 2 H2O [goid 4447] [evidence IEA]; Catalysis of the reaction: iodide + H2O2 = iodine + 2 H2O [goid 4447] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57012409-S	ILMN_283063	RT1-M1-2	NM_001008849.1	NM_001008849.1		414786	57012409	NM_001008849.1	RT1-M1-2	NP_001008849.1	ILMN_1356143	0003990341	S	708	CACTATAACCTGGCAGAGAGATGGGAGGAACCAGACTCAGGATGTGGAAG	20	-	1998912-1998961	20p12	Rattus norvegicus RT1 class I, M1, gene 2 (RT1-M1-2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62650234-S	ILMN_266928	LOC362684	XR_008142.1	XR_008142.1		362684	109478961	XR_008142.1	LOC362684		ILMN_1355734	0006110170	S	5010	ACCGCCTGTTACTGACCTGGAACCCACCGTCCATCCAACTGCTGGTCACT					PREDICTED: Rattus norvegicus similar to CG2747-PB, isoform B (LOC362684), mRNA.					
Rattus norvegicus	RefSeq	GI_62645895-S	ILMN_57927	LOC311428	XM_230611.3	XM_230611.3		311428	62645895	XM_230611.3	LOC311428	XP_230611.2	ILMN_1351434	0002630286	S	1732	GGACAGGGAGAAAGCCACAGCTCCTTGCCACATCCCTTTGATCTGCGGAG				3q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700037H04 (predicted) (LOC311428), mRNA.					
Rattus norvegicus	RefSeq	GI_62638195-S	ILMN_60135	LOC361446	XM_341725.2	XM_341725.2		361446	62638195	XM_341725.2	LOC361446	XP_341726.2	ILMN_1360854	0000460164	S	2110	GGACATCCCAACCAGGCCACCTGCATCATGCAGGAAACCACATTTGGAAT					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC361446), mRNA.					
Rattus norvegicus	RefSeq	GI_62663587-S	ILMN_274966	BTN1A1	XM_001072409.1	XM_001072409.1		306956	109505828	XM_001072409.1	Btn1a1	XP_001072409.1	ILMN_1362986	0004730136	S	1465	GTCCAGGACAACATTCCCTTGTCCCCTCTGGGGGAAGGCTCTACTTCAGG				17q11	PREDICTED: Rattus norvegicus butyrophilin, subfamily 1, member A1 (Btn1a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62639432-S	ILMN_54881	CCNE1	XM_574426.1	XM_574426.1		25729	62639432	XM_574426.1	Ccne1	XP_574426.1	ILMN_1366252	0006380193	S	1176	GTCCTGACACCCCCACACAGCAGTAAGAAGGCAGAGCAGTGAGCAGGAGA				1q22	PREDICTED: Rattus norvegicus cyclin E (Ccne1), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Increase in size of antral follicles due to cell proliferation and/or growth of the antral cavity [goid 1547] [evidence IEP]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine stimulus. Aside from DNA and RNA, purines are biochemically significant components in a number of other important biomolecules, such as ATP, GTP, cyclic AMP, NADH, and coenzyme A [goid 14074] [evidence IEP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus [goid 33197] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus [goid 51597] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Modulates the activity of a cyclin-dependent protein kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins [goid 16538] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_56605631-S	ILMN_275520	RNMT	NM_001008299.1	NM_001008299.1		291534	56605631	NM_001008299.1	Rnmt	NP_001008300.1	ILMN_1365236	0003940441	S	3050	GGGATTCTTCACAGACAGAACGTCCATGGACACAGATGCCAGAAGTCCCC	18	-	64688279-64688328	18q12.1	Rattus norvegicus RNA (guanine-7-) methyltransferase (Rnmt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript [goid 6370] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + G(5')pppR-RNA = S-adenosyl-L-homocysteine + m7G(5')pppR-RNA; m7G(5')pppR-RNA is mRNA containing an N7-methylguanine cap; R may be guanosine or adenosine [goid 4482] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94587	MGC94587
Rattus norvegicus	RefSeq	GI_27685292-S	ILMN_262892	RGD1560658_PREDICTED	XM_001066387.1	XM_001066387.1		306891	109505713	XM_001066387.1	RGD1560658_predicted	XP_001066387.1	ILMN_1365379	0002030400	S	1027	GCTGCTGCCACAGCAGGTCTTGTTGAATACTGCCTGGTGTCAATAGAAGC				17p12	PREDICTED: Rattus norvegicus similar to serine (or cysteine) proteinase inhibitor, clade B, member 1b (predicted) (RGD1560658_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662219-S	ILMN_289708	RGD1310423	NM_001029920.1	NM_001029920.1		361112	71361620	NM_001029920.1	RGD1310423	NP_001025091.1	ILMN_1371902	0006650563	S	826	AGCTGCTGAAACCACAGAGGAAAGTCACCCTGCCCAAGATCACCGAGGAA	16	+	8439876-8439907:8461636-8461653	16p16	Rattus norvegicus similar to hypothetical protein FLJ31737 (RGD1310423), mRNA.				MGC116224	MGC116224
Rattus norvegicus	RefSeq	GI_62656868-S	ILMN_269922	RGD1561062_PREDICTED	XM_001081251.1	XM_001081251.1		497983	109491681	XM_001081251.1	RGD1561062_predicted	XP_001081251.1	ILMN_1374843	0000460372	S	1974	AAGAGTGGGAAGAAGGATCTGGCACTCCTCCAGGGGGCATGTAGCAGCCA				10q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730593F17 (predicted) (RGD1561062_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650512-S	ILMN_286195	RGD1561890_PREDICTED	XM_001074333.1	XM_001074333.1		313982	109479182	XM_001074333.1	RGD1561890_predicted	XP_001074333.1	ILMN_1352940	0003850162	S	1045	ACAACGTGAGCTCTTCCGTGTGTCTGTGAAATCTCCAGTGATCTTCGTCG				6q16	PREDICTED: Rattus norvegicus similar to craniofacial development protein 1 (predicted) (RGD1561890_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506488-S	ILMN_271036	CHRNG	NM_019145.1	NM_019145.1		25753	9506488	NM_019145.1	Chrng	NP_062018.1	ILMN_1349435	0006370440	S	1508	ACTTTGACAGTGGGAATGAGGAGTGGTTGCTGGTGGGCCGAGTGCTGGAC	9	+	86017577-86017587:86017886-86017924	9q35	Rattus norvegicus cholinergic receptor, nicotinic, gamma (Chrng), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]	 [goid 4889] [evidence IDA];  [goid 4889] [evidence IEA];  [goid 4889] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts [goid 15276] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]	ACHRG	ACHRG
Rattus norvegicus	RefSeq	GI_61740614-S	ILMN_276381	LSG1	NM_001013421.1	NM_001013421.1		288029	61740614	NM_001013421.1	Lsg1	NP_001013439.1	ILMN_1365589	0001940156	S	1958	GGCTCTACAGGCACCTGGATGTGTGAGCTTGGCTGAAGAGAAATGGCAGC	11	+	72051106-72051131:72051132-72051155	11q22	Rattus norvegicus large subunit GTPase 1 homolog (S. cerevisiae) (Lsg1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence ISS]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances out of the nucleus [goid 51168] [evidence ISS]; The directed movement of substances out of the nucleus [goid 51168] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RGD1309089	RGD1309089
Rattus norvegicus	RefSeq	GI_62645351-S	ILMN_276817	SMTNL1_PREDICTED	XM_230278.3	XM_230278.3		311167	62645351	XM_230278.3	Smtnl1_predicted	XP_230278.3	ILMN_1374008	0001770152	S	1404	AAAGAAATGAATGGCAAAGCCGTGCGGGAGGAGGAAGCGGGGACTGCTGC	3	-	68017478-68017518:68017519-68017527	3q24	PREDICTED: Rattus norvegicus smoothelin-like 1 (predicted) (Smtnl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656498-S	ILMN_52898	RGD1561884_PREDICTED	XM_573133.2	XM_573133.2		497946	109488497	XM_573133.2	RGD1561884_predicted	XP_573133.1	ILMN_1364249	0001770497	S	1950	TCCCTGCTAGAGAGCTGCCAATGCCCAGGAGCTGGTTAGATTGAGCTGGC	10	-	59382892-59382941	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC29671 (predicted) (RGD1561884_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658218	ILMN_296036	RGD1310674	XM_001058775.1	XM_001058775.1		303790	109493601	XM_001058775.1	RGD1310674	XP_001058775.1	ILMN_1650164	0004060427	S	3740	CTGCAGCGCCATCACCATGCTGCTCGTAACCCGCCCTTTGTTTTGGGTTT	11	-	85352326-85352375	11q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4122402O22 (RGD1310674), mRNA.					
Rattus norvegicus	RefSeq	GI_9506960-S	ILMN_274304	PADI1	NM_019332.1	NM_019332.1		54282	9506960	NM_019332.1	Padi1	NP_062205.1	ILMN_1364681	0000380647	S	3595	GAGACTGACTACAGAGCCTCGGCAAGCATGGGAGCAAGTCTTCTGCGCCA	5	-	159671820-159671869	5q36	Rattus norvegicus peptidyl arginine deiminase, type I (Padi1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The hydrolysis of peptidyl-arginine to form peptidyl-citrulline [goid 18101] [evidence IEA]	Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IDA]; Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pdi1	Pdi1
Rattus norvegicus	RefSeq	GI_8392955-S	ILMN_63923	AVPR1B	NM_017205.2	NM_017205.2		29462	77404389	NM_017205.2	Avpr1b	NP_058901.2	ILMN_1371273	0001400292	S	1367	CAGGCTCACTGAAGGATTTAGAGCAGGTGGACGGGGAAGCCACTATGGAG	13	+	44547169-44547218	13q13	Rattus norvegicus arginine vasopressin receptor 1B (Avpr1b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence ISS]; The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment [goid 42538] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence TAS]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence IMP]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence IEA]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663632-S	ILMN_277397	RGD1560511_PREDICTED	XM_001053199.1	XM_001053199.1		306991	109505837	XM_001053199.1	RGD1560511_predicted	XP_001053199.1	ILMN_1366810	0002650446	S	2523	CTGTAACATCTGTAGTGCTAAGAACCGTGGGCCTGGAAGTGCCATCCTGG				17q11	PREDICTED: Rattus norvegicus similar to Vps41 protein (predicted) (RGD1560511_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20301959-S	ILMN_274313	SLC38A1	NM_138832.1	NM_138832.1		170567	20301959	NM_138832.1	Slc38a1	NP_620187.1	ILMN_1353486	0006450095	S	2008	ACCCAGCTCCTGAAGTCGTTTTCCTACTGACGCTCCGCCCACGCTATCTG	7	-	135252320-135252369	7q35	Rattus norvegicus solute carrier family 38, member 1 (Slc38a1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of glutamine, 2-amino-4-carbamoylbutanoic acid, into, out of, within or between cells [goid 6868] [evidence ISS]; The directed movement of glutamine, 2-amino-4-carbamoylbutanoic acid, into, out of, within or between cells [goid 6868] [evidence IEA]	Catalysis of the transfer of L-glutamine from one side of a membrane to the other. L-glutamine is 2-amino-4-carbamoylbutanoic acid [goid 15186] [evidence ISS]; Catalysis of the transfer of L-glutamine from one side of a membrane to the other. L-glutamine is 2-amino-4-carbamoylbutanoic acid [goid 15186] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Ata1; GlnT; Sat1	Ata1; GlnT; Sat1
Rattus norvegicus	RefSeq	GI_6978776-S	ILMN_282230	DRD2	NM_012547.1	NM_012547.1		24318	6978776	NM_012547.1	Drd2	NP_036679.1	ILMN_1360430	0001190465	S	2496	GTTGGAGTTGAAGCTGGATGTGGTAACTTGGGGCTCTTTGGGGCTGGGGG	8	+	52707498-52707547	8q23	Rattus norvegicus dopamine receptor 2 (Drd2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IMP]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; The regulation of blood pressure mediated by detection of stimuli and a neurological response [goid 1976] [evidence ISS]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence ISS]; The process by which a G-protein coupled receptor is taken up into an endocytic vesicle [goid 2031] [evidence IDA]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7195] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence TAS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IMP]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IMP]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IMP]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; The migration of GABAergic interneuron precursors from the subpallium to the cerebral cortex [goid 21853] [evidence ISS]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence ISS]; The process of renal water excretion [goid 30146] [evidence ISS]; The process of renal sodium excretion [goid 30147] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30814] [evidence ISS]; The actions or reactions of an organism in response to a sound [goid 31223] [evidence IMP]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence IDA]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours [goid 32922] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence ISS]; Any process that stops, prevents or reduces the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 42321] [evidence IDA]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43266] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43266] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence IDA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein [goid 43666] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; The process by which the anatomical structures of branches in a nerve are generated and organized. Morphogenesis pertains to the creation of form. This term refers to an anatomical structure (nerve) not a cell (neuron) [goid 48755] [evidence ISS]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50709] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence IDA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IMP]; Any process that decreases the concentration of calcium ions in the cytodol [goid 51481] [evidence IMP]; Any process that modulates the frequency, rate or extent of the directed movement of the catecholamine neurotransmitter dopamine into a cell [goid 51584] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of dopamine into a cell [goid 51586] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51898] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence ISS]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence ISS]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 60160] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [pmid 2410769] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7195] [pmid 2410769] [evidence IDA]; The biosynthesis of a synapse [goid 7416] [pmid 10051231] [evidence IEP]; The regulation of the levels, transport, and metabolism of potassium ions within a cell or between a cell and its external environment [goid 30007] [pmid 2162345] [evidence IC ]; The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [pmid 2162345] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [pmid 1975644] [evidence IDA]; Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43266] [pmid 2162345] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [pmid 8302280] [evidence TAS]; The regulated release of acid by a cell or group of cells [goid 46717] [pmid 8302280] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51927] [pmid 2162345] [evidence IDA]	Combining with the neurotransmitter dopamine and activating adenylate cyclase via coupling to Gi/Go to initiate a change in cell activity [goid 1591] [evidence ISS]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D2 receptors [goid 1670] [evidence IDA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D2 receptors [goid 1670] [evidence ISS]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D2 receptors [goid 1670] [evidence IDA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D2 receptors [goid 1670] [evidence ISS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine [goid 35240] [evidence ISS]; Interacting selectively with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine [goid 35240] [evidence IMP]; Interacting selectively with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine [goid 35240] [evidence IMP]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Combining with the neurotransmitter dopamine and activating adenylate cyclase via coupling to Gi/Go to initiate a change in cell activity [goid 1591] [pmid 8302280] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10391935] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [pmid 1975644] [evidence IDA]	dopamine D2 receptor	dopamine D2 receptor
Rattus norvegicus	RefSeq	GI_21245117-S	ILMN_266859	IL3RA	NM_139260.1	NM_139260.1		246144	21245117	NM_139260.1	Il3ra	NP_640353.1	ILMN_1367745	0001780044	S	836	TGGTGACAGACAACTGAGCCCTGCCCCCAGCACGGACCCCAATAAACCAA	12	-	16825717-16825750:16825751-16825766	12q11	Rattus norvegicus interleukin 3 receptor, alpha chain (Il3ra), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Cyrl	Cyrl
Rattus norvegicus	RefSeq	GI_19705438-S	ILMN_294401	GZMC	NM_134332.1	NM_134332.1		171290	19705438	NM_134332.1	Gzmc	NP_599159.1	ILMN_1351895	0000430161	S	398	TGCCCAGGCGCAATGCCCATGTGAAGCCAGGAGATGTGTGCTACATGGCT	15	-	35174375-35174424	15p12	Rattus norvegicus granzyme C (Gzmc), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Rnpk4; Rnpk-4	Rnpk4; Rnpk-4
Rattus norvegicus	RefSeq	GI_51036583-S	ILMN_299412	RPA2	NM_021582.1	NM_021582.1		59102	51036583	NM_021582.1	Rpa2	NP_067593.1	ILMN_1359929	0002060139	S	1174	GCAGAACCACGTCATGCTTGGGAGCCTCTGTTCTTGAAAGGCTTCCGTCG	5	-	152369740-152369789	5q36	Rattus norvegicus replication protein A2 (Rpa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A conserved heterotrimeric complex that binds nonspecifically to single-stranded DNA and is required for multiple processes in eukaryotic DNA metabolism, including DNA replication, DNA repair, and recombination. In all eukaryotic organisms examined the complex is composed of subunits of approximately 70, 30, and 14 kDa [goid 5662] [evidence ISS]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence NAS]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_56118318-S	ILMN_275740	POLE3	NM_001007652.2	NM_001007652.2		298098	56118318	NM_001007652.2	Pole3	NP_001007653.1	ILMN_1364265	0002760707	S	2389	CCCTACCATCTAATCTCCACTCTAAGGCTGTCAAGAATTGGAAGGGGCTC	5	-	79517751-79517800	5q24	Rattus norvegicus polymerase (DNA directed), epsilon 3 (p17 subunit) (Pole3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC94830; MGC94182	MGC94830; MGC94182
Rattus norvegicus	RefSeq	GI_62648570-S	ILMN_289701	TCEA1	NM_001025735.1	NM_001025735.1		362479	71043667	NM_001025735.1	Tcea1	NP_001020906.1	ILMN_1369147	0005050717	S	2010	GCAGTGGCTTTCACATCGTTTTCTTGACACAGACGTCCTATTGCACAGAG	5	-	14834343-14834392	5q12	Rattus norvegicus transcription elongation factor A (SII) 1 (Tcea1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase [goid 6354] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC116288	MGC116288
Rattus norvegicus	RefSeq	GI_62658606	ILMN_265263	POP7_PREDICTED	XM_001069280.1	XM_001069280.1		288564	109497060	XM_001069280.1	Pop7_predicted	XP_001069280.1	ILMN_1650305	0005270452	S	565	GGATCAGGAACAACTCAGCCATCCACATCCGAGTCTTCAGGGTCACGCCC				12q12	PREDICTED: Rattus norvegicus processing of precursor 7, ribonuclease P family, (S. cerevisiae) (predicted) (Pop7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540662-S	ILMN_278338	BHMT	NM_030850.1	NM_030850.1		81508	13540662	NM_030850.1	Bhmt	NP_110477.1	ILMN_2039973	0004390092	S	1579	GTCACCCGACGTCAATCTCATTTCAGATAGGGGGATAGGACACCACCTCC	2	-	23923888-23923937	2q12	Rattus norvegicus betaine-homocysteine methyltransferase (Bhmt), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IDA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence IDA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence ISS]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IDA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine [goid 8898] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine [goid 8898] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: homocysteine + betaine = L-methionine + dimethylglycine [goid 47150] [evidence IDA]; Catalysis of the reaction: homocysteine + betaine = L-methionine + dimethylglycine [goid 47150] [evidence IMP]; Catalysis of the reaction: homocysteine + betaine = L-methionine + dimethylglycine [goid 47150] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664934-S	ILMN_275288	CARD15_PREDICTED	XM_001066676.1	XM_001066676.1		291912	109508499	XM_001066676.1	Card15_predicted	XP_001066676.1	ILMN_1374636	0001340414	S	2759	GGTGCCCACGCCCTAGCCCTGATGCTGGAGAAGAACAAGTCACTAGAGGA				19p11	PREDICTED: Rattus norvegicus caspase recruitment domain family, member 15 (predicted) (Card15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649233-S	ILMN_267229	RGD1563227_PREDICTED	XM_001055888.1	XM_001055888.1		502968	109476747	XM_001055888.1	RGD1563227_predicted	XP_001055888.1	ILMN_1373024	0003170441	S	1119	GTACATGGGGCAGATGAGGGCCTCCGTTGATCAGAACGTTTACGCAAGTC				5q32	PREDICTED: Rattus norvegicus similar to zinc finger protein 352 (predicted) (RGD1563227_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741624-A	ILMN_267730	LOC304000	NM_001006990.2	NM_001006990.2		304000	67514578	NM_001006990.2	LOC304000	NP_001006991.1	ILMN_1376918	0004010402	S	1399	GCCCAGTGACTCATCCACGAGTTTCCTTTGACATCGCCAGTCCTCAGAAG	11	+	36754820-36754869	11q12	Rattus norvegicus cell adhesion molecule JCAM (LOC304000), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62660140-S	ILMN_292070	PLAC8_PREDICTED	XM_001067597.1	XM_001067597.1		360914	109500317	XM_001067597.1	Plac8_predicted	XP_001067597.1	ILMN_1363160	0001340632	S	482	TGAAGTCAGCACACGCCCTTCAGCCCGAGCCCTTCAGACACCTTTGGCAA				14p22	PREDICTED: Rattus norvegicus placenta-specific 8 (predicted) (Plac8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786137-S	ILMN_301793	DYNLT1	NM_031318.1	NM_031318.1		83462	13786137	NM_031318.1	Dynlt1	NP_112608.1	ILMN_1352889	0000630333	S	351	ATCTGACCGCCTGACTGCCTCAGCCTCCGGTTCCAGCGTTTCTAGTCCAT	1	-	41097471-41097515:41097516-41097520	1q11	Rattus norvegicus dynein light chain Tctex-type 1 (Dynlt1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence TAS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence ISS]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57222339-S	ILMN_274990	TAAR3	NM_001009532.1	NM_001009532.1		494319	57222339	NM_001009532.1	Taar3	NP_001009532.1	ILMN_1355341	0006400398	S	762	CAAGACTCTCGGTATCGTCATGGGGGTGTTTCTGGCGTGCTGGCTACCTT	1	-	22018823-22018872	1p12	Rattus norvegicus trace amine associated receptor 3 (Taar3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_29789025-S	ILMN_301554	NEFH	NM_012607.1	NM_012607.1		24587	29789025	NM_012607.1	Nefh	NP_036739.1	ILMN_1355295	0002900653	S	3204	GTCCTCTAGCACAGACCAAAAAGACAGCCAGCCCTCAGAGAAGGCCCCAG	14	-	85595378-85595384:85595385-85595427	14q21	Rattus norvegicus neurofilament, heavy polypeptide (Nefh), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins [goid 45104] [evidence ISS]; The formation of the bundles of intermediate filaments, known as tonofilaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs [goid 45110] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]	Nfh	Nfh
Rattus norvegicus	RefSeq	GI_62645403-S	ILMN_269068	CHRM4	XM_001078223.1	XM_001078223.1		25111	109470328	XM_001078223.1	Chrm4	XP_001078223.1	ILMN_1369975	0000730113	S	2719	CAAGCACCCTCATTAGTCCCCAAGGAGAGCATTCCAGACTGGCAGTAGCC				3q24	PREDICTED: Rattus norvegicus cholinergic receptor, muscarinic 4 (Chrm4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7197] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4981] [evidence TAS];  [goid 4981] [evidence ISS];  [goid 4981] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62657528-S	ILMN_54467	LOC497676	XM_579515.1	XM_579515.1		497676	62657528	XM_579515.1	LOC497676	XP_579515.1	ILMN_1365609	0002230292	S	2534	TAATTAAGGCCGTGGATGAGGGCTATCGCCTGCCACCTCCCATGGACTGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031564 (LOC497676), mRNA.					
Rattus norvegicus	RefSeq	GI_34854831-S	ILMN_273908	RGD1564306_PREDICTED	XM_001066066.1	XM_001066066.1		311031	109469915	XM_001066066.1	RGD1564306_predicted	XP_001066066.1	ILMN_1363090	0001570593	S	120	GGGATCTCGAATGCCTCACATCGAGCAGGTGAGCCGGGCCATGTTTGAAC				3q12	PREDICTED: Rattus norvegicus similar to developmental pluripotency associated 5 (predicted) (RGD1564306_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638416-S	ILMN_48525	PDCD6_PREDICTED	XM_217732.4	XM_217732.4		308061	109457647	XM_217732.4	Pdcd6_predicted	XP_217732.2	ILMN_1361127	0001090288	S	846	GAACACAGACGTTGGGGTTGCTGACTGATTGTGCCATGAGGTGAGACCTA	1	+	29784941-29784990	1p11	PREDICTED: Rattus norvegicus programmed cell death 6 (predicted) (Pdcd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577036-S	ILMN_285072	OLR292	NM_001000232.1	NM_001000232.1		293594	47577036	NM_001000232.1	Olr292	NP_001000232.1	ILMN_1373023	0006860309	S	675	CCGTTCAGCTGAAGGCAAGCGACGTGCTTTTTCTACCTGCTCTGCACACC	1	+	200270222-200270271	1q41	Rattus norvegicus olfactory receptor 292 (Olr292), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-200419540-200420457_ORF; Olr292	ratchr1-200419540-200420457_ORF; Olr292
Rattus norvegicus	RefSeq	GI_62660929-I	ILMN_65266	HSPD1	XM_573677.1	XM_573677.1		63868	62660929	XM_573677.1	Hspd1	XP_573677.1	ILMN_1375684	0006130066	S	91	TTGCTGAGCTACACCAGGGGGCCCGTGAACACCCAGAACTCTCATACGGC				9q31	PREDICTED: Rattus norvegicus heat shock protein 1 (chaperonin) (Hspd1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence ISS]; Any of the inward folds of the mitochondrial inner membrane. Their number, extent, and shape differ in mitochondria from different tissues and organisms. They appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found. Their shape can vary with the respiratory state of the mitochondria [goid 30061] [evidence IDA]; Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins [goid 30135] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence IDA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 44459] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated [goid 46696] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The series of events in which a misfolded protein stimulus is received and converted into a molecular signal [goid 2236] [evidence IDA]; Any process that contributes to cytokine production by a B cell [goid 2368] [evidence ISS]; Any series of molecular signals generated as a consequence of binding to a toll-like receptor and relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of a T cell mediated immune response to tumor cell [goid 2842] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure [goid 6458] [evidence IC ]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate, or extent of interferon-alpha production [goid 32727] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-10 production [goid 32733] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IEP]; The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones [goid 42026] [evidence ISS]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that stimulates, induces or increases the rate of macrophage activation [goid 43032] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; The switching of activated B cells from IgM biosynthesis to biosynthesis of an IgG isotype, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and one of the IgG constant region gene segments in the immunoglobulin heavy chain locus [goid 48291] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IDA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with one of the p53 family of proteins [goid 2039] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IPI]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]; Interacting selectively with a misfolded protein [goid 51787] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_56605641-S	ILMN_268919	DIABLO	NM_001008292.1	NM_001008292.1		288753	56605641	NM_001008292.1	Diablo	NP_001008293.1	ILMN_1359056	0000460022	S	955	ACTCCCAAAGCACTTCACCAACCGGGGCCAATGGAGGAGGGGCCTTTTCT	12	+	34209280-34209329	12q16	Rattus norvegicus diablo homolog (Drosophila) (Diablo), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; The activation, by oxidative stress, of any of the steps required for cell death by apoptosis [goid 8631] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105680; Smac	MGC105680; Smac
Rattus norvegicus	RefSeq	GI_62648984-S	ILMN_282155	ZFP189_PREDICTED	XM_001054832.1	XM_001054832.1		313219	109476467	XM_001054832.1	Zfp189_predicted	XP_001054832.1	ILMN_1367428	0000870068	S	2764	CAAGGAATCTTTGGGAGTGCCTTCCCCTGAGCCCCAAAATGGGCCCCAAA				5q22	PREDICTED: Rattus norvegicus zinc finger protein 189 (predicted) (Zfp189_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576834-S	ILMN_268154	OLR204	NM_001000192.1	NM_001000192.1		293351	47576834	NM_001000192.1	Olr204	NP_001000192.1	ILMN_1356273	0004560079	S	869	ACAGCCTGCGGAATAAGGAGGTCACTGGAGCTTTGAAGAGAGTCCTGAGG	1	-	163833811-163833860	1q33	Rattus norvegicus olfactory receptor 204 (Olr204), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr204	Olr204
Rattus norvegicus	RefSeq	GI_62652276-S	ILMN_271578	STAC3_PREDICTED	XM_001056439.1	XM_001056439.1		362895	109482085	XM_001056439.1	Stac3_predicted	XP_001056439.1	ILMN_1353485	0006900184	S	1270	GCTGAGCATCCTGCACCGATAAGGCCCACACTTCAGGTCCATCCAAACCT				7q22	PREDICTED: Rattus norvegicus SH3 and cysteine rich domain 3 (predicted) (Stac3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649524-S	ILMN_56301	LOC360407	XM_346749.2	XM_346749.2		360407	62649524	XM_346749.2	LOC360407	XP_346750.1	ILMN_1369375	0003610315	S	2641	CCCAATCCCAGCACATCGCCTCAGGGCACTGACTCCAACCTTCTCCGTCA					PREDICTED: Rattus norvegicus hypothetical LOC360407 (LOC360407), mRNA.					
Rattus norvegicus	RefSeq	GI_9910335-S	ILMN_291049	PTHR1	NM_020073.1	NM_020073.1		56813	9910335	NM_020073.1	Pthr1	NP_064458.1	ILMN_1351948	0006770176	S	1715	CCCTACCAGTCACTATGGCGGTTCCCAAGGACGATGGATTCCTTAACGGC	8	-	115099861-115099910	8q32	Rattus norvegicus parathyroid hormone receptor 1 (Pthr1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEA]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence IEA]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with parathyroid hormone to initiate a change in cell activity [goid 4991] [evidence IDA]; Combining with parathyroid hormone to initiate a change in cell activity [goid 4991] [evidence IEA]; Combining with parathyroid hormone to initiate a change in cell activity [goid 4991] [evidence ISS]	PTHrel; Pthr	PTHrel; Pthr
Rattus norvegicus	RefSeq	GI_51592093-S	ILMN_278840	CYB5R4	NM_133427.2	NM_133427.2		171015	51592093	NM_133427.2	Cyb5r4	NP_596918.2	ILMN_1348830	0004610129	S	1590	CTGTGGACCAACCCCATTTACAGATGAGGGGATAAGGTTGCTGCATGATC	8	+	92339633-92339668:92342908-92342921	8q31	Rattus norvegicus cytochrome b5 reductase 4 (Cyb5r4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein [goid 3958] [evidence IDA]; Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence ISS]; Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence ISS]; Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	b5&b5R; Ncb5or	b5&b5R; Ncb5or
Rattus norvegicus	RefSeq	GI_27729768-S	ILMN_263021	RPL26	XM_001079131.1	XM_001079131.1		287417	109491064	XM_001079131.1	Rpl26	XP_001079131.1	ILMN_1361775	0005290112	S	89	GTGACTTCTGACCGAAGCAAGAACCGCAAACGGCATTTCAATGCACCATC				10q24	PREDICTED: Rattus norvegicus ribosomal protein L26 (Rpl26), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656272-S	ILMN_263021	RPL26	XM_001079131.1	XM_001079131.1		287417	109491064	XM_001079131.1	Rpl26	XP_001079131.1	ILMN_1360033	0004850301	S	217	TCGAAAGGACGACGAAGTTCAGGTTGTTCGAGGACACTACAAAGGCCAGC				10q24	PREDICTED: Rattus norvegicus ribosomal protein L26 (Rpl26), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646886-S	ILMN_63287	LOC500040	XM_575396.1	XM_575396.1		500040	62646886	XM_575396.1	LOC500040	XP_575396.1	ILMN_1351679	0005890576	S	3506	GCTATAGACACAAAGGCTGTCTTCTTTGCCTGTGCACGCGCATCCTTGGG				4q21	PREDICTED: Rattus norvegicus similar to Testis derived transcript (LOC500040), mRNA.					
Rattus norvegicus	RefSeq	GI_62641048-S	ILMN_288375	NUP98	XM_001068834.1	XM_001068834.1		81738	109462531	XM_001068834.1	Nup98	XP_001068834.1	ILMN_1352219	0006220129	S	6197	GCCAGAGGAGTTTAGATGAAGAATGTCAAGGGTGTTCCTCCCTGCCCTCC				1q32	PREDICTED: Rattus norvegicus nucleoporin 98 (Nup98), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IDA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence NAS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62662299-S	ILMN_61195	ZFP488_PREDICTED	XM_224697.4	XM_224697.4		290571	109503076	XM_224697.4	Zfp488_predicted	XP_224697.4	ILMN_1367639	0005080373	S	737	CGCTCTCCTCCCTGGGCTTGTCTACTCAGAACTGGTGTGCCAAGTGCAAC	16	-	9599689-9599738	16p16	PREDICTED: Rattus norvegicus zinc finger protein 488 (predicted) (Zfp488_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667344-S	ILMN_277090	RGD1566129_PREDICTED	XR_008441.1	XR_008441.1		501635	109512599	XR_008441.1	RGD1566129_predicted		ILMN_1357288	0002900400	S	927	CCTTTCCTGGTATGGCAATGAATAAGCAATAGGTTGGTGGACCTCATGGC				Xq35	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1566129_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646591-S	ILMN_48369	LOC366287	XM_345493.2	XM_345493.2		366287	62646591	XM_345493.2	LOC366287	XP_345494.2	ILMN_1358790	0000630735	S	738	CTGGTGCTCGTTGGAAGCCAGGCACTGAGCCAAGCACACAAGCTAGACAG					PREDICTED: Rattus norvegicus similar to KIAA1160 protein (LOC366287), mRNA.					
Rattus norvegicus	RefSeq	GI_40254762-S	ILMN_272134	RHAG	NM_023022.2	NM_023022.2		65207	40254762	NM_023022.2	Rhag	NP_075411.2	ILMN_1361605	0000770369	S	1538	CTCAGTCGACAGAAAATTGCTCACAAAGCAGTCTATCCTAGACCCTAAGG	9	-	15941421-15941470	9q12	Rattus norvegicus Rh-associated glycoprotein (Rhag), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The regulation of the levels, transport, and metabolism of ions within a cell or between a cell and its external environment [goid 6873] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals [goid 15696] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals [goid 8519] [evidence ISS]; Interacting selectively with ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins [goid 30506] [evidence ISS]	Rh50	Rh50
Rattus norvegicus	RefSeq	GI_54400733-S	ILMN_295175	PI4K2B	NM_001005883.1	NM_001005883.1		305419	54400733	NM_001005883.1	Pi4k2b	NP_001005883.1	ILMN_1365762	0001090161	S	1381	CATGCGTGATCGTGGAGTGCAGCAAAAGTGGTGGCCAGGGGCGTGTTGTA	14	-	62976121-62976170	14q11	Rattus norvegicus phosphatidylinositol 4-kinase type 2 beta (Pi4k2b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94512	MGC94512
Rattus norvegicus	RefSeq	GI_62639861-S	ILMN_67732	LOC502328	XM_577793.1	XM_577793.1		502328	62639861	XM_577793.1	LOC502328	XP_577793.1	ILMN_1353236	0006550687	S	765	GAAGCCACAGACTTCTTTGGGATACTTGGGAAACCCTCAGGGATCGAAGG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502328), mRNA.					
Rattus norvegicus	RefSeq	GI_62718324	ILMN_53921	LOC501363	XM_576776.1	XM_576776.1		501363	62718324	XM_576776.1	LOC501363	XP_576776.1	ILMN_1650836	0002190563	S	1	CTTAAGGCTACTCCCATGGAGAATGGCAGATTCATCAGAACAGGGCACAG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501363), mRNA.					
Rattus norvegicus	RefSeq	GI_62640902-S	ILMN_278916	ANKRD42_PREDICTED	XM_001062764.1	XM_001062764.1		293117	109462421	XM_001062764.1	Ankrd42_predicted	XP_001062764.1	ILMN_1362821	0003130079	S	2217	GCGACTCCGCAGGGAGAAGTTAGAGTGTCAACTGGATGAGTACCGAGTGG				1q32	PREDICTED: Rattus norvegicus ankyrin repeat domain 42 (predicted) (Ankrd42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646353-S	ILMN_275194	WFDC3_PREDICTED	XM_001071976.1	XM_001071976.1		296366	109471311	XM_001071976.1	Wfdc3_predicted	XP_001071976.1	ILMN_1353534	0005910300	S	488	CAACCTGGGGAAAGGTGCTGTAAATCAGGCTGTGGCCGCTTCTGCATCCG				3q42	PREDICTED: Rattus norvegicus WAP four-disulfide core domain 3 (predicted) (Wfdc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661095-S	ILMN_58509	LOC498447	XM_573706.1	XM_573706.1		498447	62661095	XM_573706.1	LOC498447	XP_573706.1	ILMN_1359598	0004230347	S	819	GCACCTGCGAGGCTGTCATGGGAAGGAGGAGCCCAGCGGTCTGGTGAATT					PREDICTED: Rattus norvegicus similar to PNAS-137 (LOC498447), mRNA.					
Rattus norvegicus	RefSeq	GI_50657358-S	ILMN_299016	PDGFD	NM_023962.2	NM_023962.2		66018	50657358	NM_023962.2	Pdgfd	NP_076452.1	ILMN_1352347	0004850372	S	1260	TAGGTTAAGAAAACATGGTAAGAGACCCTTGTCCCACCCTAAGGAGCCAG				8q11	Rattus norvegicus platelet-derived growth factor, D polypeptide (Pdgfd), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	rSCDGF-B; Scdgfb	rSCDGF-B; Scdgfb
Rattus norvegicus	RefSeq	GI_61097946-S	ILMN_294546	HGFAC	NM_053320.1	NM_053320.1		58947	61097946	NM_053320.1	Hgfac	NP_445772.1	ILMN_1362987	0001050593	S	1793	GGACTCGGGTGGGCCCTTGGTCTGTGAGAAGAATGGTGTGGCTTACCTGT	14	-	81348481-81348530	14q21	Rattus norvegicus hepatocyte growth factor activator (Hgfac), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC109000	MGC109000
Rattus norvegicus	RefSeq	GI_62650974	ILMN_63647	LOC503038	XM_578559.1	XM_578559.1		503038	62650974	XM_578559.1	LOC503038	XP_578559.1	ILMN_1649824	0004560242	S	392	TTCGAGAAGAGGGTTCCCGTCACAGGCTTCTCATGGAAAAGGCAAAGGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC503038), mRNA.					
Rattus norvegicus	RefSeq	GI_62661437-S	ILMN_64747	ABHD4_PREDICTED	XM_344403.3	XM_344403.3		364380	109501592	XM_344403.3	Abhd4_predicted	XP_344404.3	ILMN_1365062	0001660400	S	2311	AGTGTTAACTCCTGGTGCTTTGTACTACTGGTCCAGCTGCCTCGGGCTCC	15	+	32325069-32325118	15p13	PREDICTED: Rattus norvegicus abhydrolase domain containing 4 (predicted) (Abhd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644850-S	ILMN_52008	ZYG11BL	XM_242300.4	XM_242300.4		311842	109467979	XM_242300.4	Zyg11bl	XP_242300.3	ILMN_1360769	0006760601	S	4101	GCAGAGCTGTCATCCACTGCTTTACCACCTGGGTCTGGGGAAATGTCTGT	3	-	9102544-9102593	3p12	PREDICTED: Rattus norvegicus zyg-11 homolog B (C. elegans)-like, transcript variant 2 (Zyg11bl), mRNA.					
Rattus norvegicus	RefSeq	GI_62648899-S	ILMN_276843	HINT2_PREDICTED	XM_001070128.1	XM_001070128.1		313491	109476408	XM_001070128.1	Hint2_predicted	XP_001070128.1	ILMN_1373888	0000430280	S	311	GCCAGGCTGAAGAAGACGACCAACAGCTTCTAGGACACTTACTCCTCGTG				5q22	PREDICTED: Rattus norvegicus histidine triad nucleotide binding protein 2 (predicted) (Hint2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656073-S	ILMN_69877	P4HA2_PREDICTED	XM_340798.3	XM_340798.3		360526	109488102	XM_340798.3	P4ha2_predicted	XP_340799.3	ILMN_1353974	0002350195	S	1792	TTCCCCGACTTGGGAGCTGCGATTTGGCCCAAGAAGGGCACGGCTGTATT	10	+	39548551-39548586:39548898-39548911	10q22	PREDICTED: Rattus norvegicus procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide (predicted) (P4ha2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659723-S	ILMN_281908	ADAMTS4	XM_001053685.1	XM_001053685.1		66015	109499024	XM_001053685.1	Adamts4	XP_001053685.1	ILMN_1359599	0001050520	S	2289	GATGCCCTCCTCAACAGATGTGGTACTTCCTGGGGCAGTCAGCTTGCGCT				13q24	PREDICTED: Rattus norvegicus a disintegrin and metallopeptidase with thrombospondin motifs 4 (Adamts4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence TAS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IDA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665505	ILMN_296903	RBM34	NM_001014015.1	NM_001014015.1		307956	62078760	NM_001014015.1	Rbm34	NP_001014037.1	ILMN_1650378	0007000142	S	1310	GACTTTGTCCCCTTCCTTTCTGTGGTGAAACCTTGCAATGAGTGTCTGGG	19	-	56866015-56866064	19q12	Rattus norvegicus RNA binding motif protein 34 (Rbm34), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	RGD1310161	RGD1310161
Rattus norvegicus	RefSeq	GI_62645682-S	ILMN_269066	LOC691947	XM_001080279.1	XM_001080279.1		691947	109468722	XM_001080279.1	LOC691947	XP_001080279.1	ILMN_1360129	0004780152	S	2281	CTCCAGTGAATGCTGTTGAAGGCAGACAAGGGCTACGATTTCCTCAGCAG	3	+	108838729-108838778	3q35	PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha) (LOC691947), mRNA.					
Rattus norvegicus	RefSeq	GI_62649294-S	ILMN_271560	CACHD1_PREDICTED	XM_001056642.1	XM_001056642.1		298267	109476795	XM_001056642.1	Cachd1_predicted	XP_001056642.1	ILMN_1351821	0003140338	S	4031	GAAAGGAGGCGACGCTACTGGGGCCGCTCGGGAACCGAAAGTGATCATGA				5q33	PREDICTED: Rattus norvegicus cache domain containing 1 (predicted) (Cachd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27693078-S	ILMN_62931	RAB25_PREDICTED	XM_227404.4	XM_227404.4		310632	109465063	XM_227404.4	Rab25_predicted	XP_227404.1	ILMN_2039532	0007150544	S	620	CCCCACTGAGGAGGCGTGCATGTTTGCTGAGAACAATGGCCTGCTATTCC	2	-	180657848-180657869:180658396-180658423	2q34	PREDICTED: Rattus norvegicus RAB25, member RAS oncogene family (predicted) (Rab25_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667387-S	ILMN_59409	RGD1562057_PREDICTED	XM_229144.4	XM_229144.4		302826	109511212	XM_229144.4	RGD1562057_predicted	XP_229144.4	ILMN_1355129	0000360411	S	1936	GGCAAAGGAACAAAGTCACCCAGGGCCCGCATCCGCTTGTCTTCTGGTAG	X	-	137631026-137631075	Xq36	PREDICTED: Rattus norvegicus RGD1562057 (predicted) (RGD1562057_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638538-S	ILMN_302210	PNLDC1	NM_001025724.1	NM_001025724.1		361478	71043643	NM_001025724.1	Pnldc1	NP_001020895.1	ILMN_1371367	0000450563	S	1657	TAAGGATGCCCGCAGTGTCTTGAAGGAATACAGGAGCCACCCAACCCTGC	1	+	42134888-42134893:42134989-42135032	1q11	Rattus norvegicus poly(A)-specific ribonuclease (PARN)-like domain containing 1 (Pnldc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]	MGC116282	MGC116282
Rattus norvegicus	RefSeq	GI_8392919-S	ILMN_290131	ARG1	NM_017134.1	NM_017134.1		29221	8392919	NM_017134.1	Arg1	NP_058830.1	ILMN_1356828	0002650026	S	1033	TCACAGCAAACCGAACAGAACCAGGCCAACGCTGCTCCTCCCAAGGGCTT	1	+	21010922-21010971	1p12	Rattus norvegicus arginase 1 (Arg1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IDA]; A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IEA]; The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6525] [evidence IDA]; The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6525] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]	Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence IDA]; Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence IDA]; Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence ISS]; Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638361-S	ILMN_68513	LOC498989	XM_574280.1	XM_574280.1		498989	62638361	XM_574280.1	LOC498989	XP_574280.1	ILMN_1363791	0007000647	S	312	CCAGGTCTGCTGCCAGGCTCCAAGGGTGGGTCTCTGAGGGGCTAGAAAAT					PREDICTED: Rattus norvegicus similar to Ab2-143 (LOC498989), mRNA.					
Rattus norvegicus	RefSeq	GI_62658020-S	ILMN_274474	LOC684506	XM_001066087.1	XM_001066087.1		684506	109494450	XM_001066087.1	LOC684506	XP_001066087.1	ILMN_1357255	0005570717	S	1584	TGGTGGGCCGTGGCTCTGCCGGTTCTTTGTGGTAACTCCTGGGACCAACA					PREDICTED: Rattus norvegicus similar to nuclear cap binding protein subunit 2, transcript variant 1 (LOC684506), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652800-S	ILMN_275714	ZC3H7B_PREDICTED	XM_001077292.1	XM_001077292.1		315158	109482615	XM_001077292.1	Zc3h7b_predicted	XP_001077292.1	ILMN_1374634	0005670520	S	4720	CCATGGCCGTGAATGTGGATGACACTTGTTCTCCTGACCTGTGGTGTTGC				7q34	PREDICTED: Rattus norvegicus zinc finger CCCH-type containing 7B (predicted) (Zc3h7b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650024-S	ILMN_59803	LOC362659	XM_342978.2	XM_342978.2		362659	62650024	XM_342978.2	LOC362659	XP_342979.2	ILMN_1364398	0001240242	S	757	GCTTTCTACAGGGTGGACCTGAGCCTGGACTTCGCAGAGATGGACTCTCC					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ37118 (LOC362659), mRNA.					
Rattus norvegicus	RefSeq	GI_62664122-S	ILMN_285091	LOC498829	XR_005439.1	XR_005439.1		498829	109484075	XR_005439.1	LOC498829		ILMN_1359572	0003780215	S	1206	ACTGCCCGAAGAACAGTGGACCTTGGCGTGGGCCGGAGCAAGAAATACCC	8	-	123075778-123075792:123077177-123077211	8q32	PREDICTED: Rattus norvegicus Ab2-143 (LOC498829), misc RNA.					
Rattus norvegicus	RefSeq	GI_62665391	ILMN_282237	RGD1562761_PREDICTED	XM_001079405.1	XM_001079405.1		307920	109509016	XM_001079405.1	RGD1562761_predicted	XP_001079405.1	ILMN_1650182	0002970739	S	529	GGGGAGATCCACCGGGTCACTATCCTGTGTGACAAGTTCTCTGGACACCC				19q12	PREDICTED: Rattus norvegicus similar to embryonic pol(yA) binding protein 2 (predicted) (RGD1562761_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978810-S	ILMN_297947	ENO3	NM_012949.1	NM_012949.1		25438	6978810	NM_012949.1	Eno3	NP_037081.1	ILMN_1365463	0004540288	S	1322	GCTGGAGATTCCACGATTCCACAGGACAGACACAGGCCTCCAAGCCCTTC	10	+	57542242-57542291	10q24	Rattus norvegicus enolase 3, beta (Eno3), mRNA.	A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water [goid 15] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O [goid 4634] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	MSE; MGC93623; BBE	MSE; MGC93623; BBE
Rattus norvegicus	RefSeq	GI_6978881-S	ILMN_273302	GCG	NM_012707.1	NM_012707.1		24952	6978881	NM_012707.1	Gcg	NP_036839.1	ILMN_1365500	0000130152	S	396	CCCGGAAGAAGTCGCCATAGCTGAGGAACTTGGGCGCAGACATGCTGATG	3	-	44433270-44433319	3q21	Rattus norvegicus glucagon (Gcg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates [goid 6109] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence TAS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence TAS]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence IEA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with a glucagon receptor [goid 31769] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647866-S	ILMN_64269	RGD1564924_PREDICTED	XM_575617.2	XM_575617.2		500267	109472427	XM_575617.2	RGD1564924_predicted	XP_575617.2	ILMN_1369644	0005690519	S	1513	TGTAATCAAAACGCTCAAGCCAGTGCCGAGAAATAGGCCGCCCCCGCTGG	4	-	131968096-131968145	4q34	PREDICTED: Rattus norvegicus similar to leiomodin 3 (fetal) (predicted) (RGD1564924_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717758-S	ILMN_69068	LOC501215	XM_576638.1	XM_576638.1		501215	62717758	XM_576638.1	LOC501215	XP_576638.1	ILMN_1372472	0001230670	S	419	TGGGGTATCGCCTTTCATTATGTATGGTAGAGGAGAAACAGCAATACGTC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501215), mRNA.					
Rattus norvegicus	RefSeq	GI_62645570-S	ILMN_65317	SPRED1	XM_230454.4	XM_230454.4		296072	109468640	XM_230454.4	Spred1	XP_230454.3	ILMN_1357078	0005390746	S	3390	TGGAGGCTGCTACACAGATAGATGATCTTCATCCTTGGCGTTTTCAGATA	3	+	103248205-103248254	3q35	PREDICTED: Rattus norvegicus sprouty protein with EVH-1 domain 1, related sequence (Spred1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]	Interacting selectively with the stem cell factor receptor (SCFR), a type III transmembrane kinase receptor [goid 5173] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_17105365-S	ILMN_267914	SV2A	NM_057210.1	NM_057210.1		117559	17105365	NM_057210.1	Sv2a	NP_476558.1	ILMN_1348950	0001980563	S	3582	AGGTCTGAAAGCACAAGAAGCTGGGGCAGGGGCAGGAAGCAGGGGTCCAT	2	+	191000551-191000600	2q34	Rattus norvegicus synaptic vesicle glycoprotein 2a (Sv2a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence TAS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence TAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Sv2; MGC105346	Sv2; MGC105346
Rattus norvegicus	RefSeq	GI_55741682-S	ILMN_275377	JUB	NM_053503.1	NM_053503.1		85265	55741682	NM_053503.1	Jub	NP_445955.1	ILMN_1364747	0000450435	S	2928	GGACCCTTGCTGGCTGAAAGTTAGGTTCCTTGGATGACCAGGTTGCCAAG	15	-	32627889-32627938	15p13	Rattus norvegicus jub, ajuba homolog (Xenopus laevis) (Jub), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence ISS]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence IEA]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence ISS]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IEA]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93830	MGC93830
Rattus norvegicus	RefSeq	GI_62660598-S	ILMN_60923	LOC289701	XM_223504.2	XM_223504.2		289701	62660598	XM_223504.2	LOC289701	XP_223504.1	ILMN_1358809	0006770017	S	0	TGCCCCTCTCTGTTTCTCAGGCTGTCGGGAAGATGACGGAGATTCAGGCG				14q21	PREDICTED: Rattus norvegicus similar to ribosomal protein S11 (LOC289701), mRNA.					
Rattus norvegicus	RefSeq	GI_62649558-S	ILMN_299879	RGD1306880_PREDICTED	XM_001073980.1	XM_001073980.1		313553	109477128	XM_001073980.1	RGD1306880_predicted	XP_001073980.1	ILMN_1358199	0004760014	S	1409	CCAATGGGTCTACCTCTAGTGAGAGTGAACCTGAACTGGGAGAGGCCCGG					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC47816 (predicted) (RGD1306880_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576806-S	ILMN_269257	OLR826	NM_001000903.1	NM_001000903.1		405213	47576806	NM_001000903.1	Olr826	NP_001000903.1	ILMN_1353908	0001050427	S	302	GGGCCTGCTTCTCACAGGCCTTTGTTGTTCTTTTCCTGGGGGCGACGGTT	4	+	152782133-152782182	4q42	Rattus norvegicus olfactory receptor 826 (Olr826), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr826; SCR G-16	Olr826; SCR G-16
Rattus norvegicus	RefSeq	GI_16758271-S	ILMN_288586	CPN1	NM_053526.1	NM_053526.1		365466	16758271	NM_053526.1	Cpn1	NP_445978.1	ILMN_1372924	0005550400	S	1792	CTGCAACAGGGTTCTGGAGACCTTTCTGGGAGTCTGGTTCGGGTCACTGC				1q54	Rattus norvegicus carboxypeptidase N, polypeptide 1, 50kD (Cpn1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IDA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence ISS]; Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108636; Cpn	MGC108636; Cpn
Rattus norvegicus	RefSeq	GI_34874308-S	ILMN_276928	LOC690739	XM_001075438.1	XM_001075438.1		690739	109512983	XM_001075438.1	LOC690739	XP_001075438.1	ILMN_1367405	0003840411	S	731	CAAGACACAGACCAGGACAAGATCTCCCTTGGAGAGAAGAACTACAGGAG	Un|NW_047851.1	-	3122595-3122644		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC690739), mRNA.					
Rattus norvegicus	RefSeq	GI_6978600-S	ILMN_272806	ALX1	NM_012921.1	NM_012921.1		25401	6978600	NM_012921.1	Alx1	NP_037053.1	ILMN_1361316	0002850504	S	1520	AGCTGCTGTGTGTGGAAGGGCTAAAGGTCAAGATAGACGGTGAGACCAGC	7	-	41090674-41090723	7q21	Rattus norvegicus ALX homeobox 1 (Alx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence TAS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process aimed at the progression of a mesenchymal cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14031] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	CART1X	CART1X
Rattus norvegicus	RefSeq	GI_51491892-S	ILMN_296708	PBLD	NM_138530.2	NM_138530.2		171564	51491892	NM_138530.2	Pbld	NP_612539.2	ILMN_1371795	0006510068	S	1698	GAGGCTCTGCTCCAATGCTGGGGAATATGGGTTTGTATGGGCTCTAAGGA	20	+	25428011-25428060	20p11	Rattus norvegicus phenazine biosynthesis-like protein domain containing (Pbld), mRNA.		The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC93185	MGC93185
Rattus norvegicus	RefSeq	GI_62645712-S	ILMN_49261	PRG3_PREDICTED	XM_230054.4	XM_230054.4		295706	109468386	XM_230054.4	Prg3_predicted	XP_230054.2	ILMN_1356745	0002100673	S	482	AGAACTTTTGCTGGACTGATGGGAGCCGCTGGGATTTTGGATACTGGGCC	3	+	68224407-68224456	3q24	PREDICTED: Rattus norvegicus proteoglycan 3 (predicted) (Prg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663993-S	ILMN_67186	LOC291345	XM_225619.3	XM_225619.3		291345	62663993	XM_225619.3	LOC291345	XP_225619.2	ILMN_1352162	0006020132	S	2017	ATGATGGAGCAGCAAATTGTTTTCTTTATGCAGTCCAGGCAGCCAAGGAC				17q12.3	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC291345), mRNA.					
Rattus norvegicus	RefSeq	GI_62659452-S	ILMN_286081	RGD1565548_PREDICTED	XR_008588.1	XR_008588.1		364007	109498779	XR_008588.1	RGD1565548_predicted		ILMN_1360163	0005080364	S	49	CTCCTGAAAAAGAGGCAGGCCCTCAAACCCACTCAGGCAAAGCAGGCTCT				13q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L7-like 1 (predicted) (RGD1565548_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647973	ILMN_69162	LOC497796	XM_579296.1	XM_579296.1		497796	62647973	XM_579296.1	LOC497796	XP_579296.1	ILMN_1650163	0002350162	S	1043	TGCTTGTGCCCCTCTTTCTGTCCAGACAACTTGGGTCTGTGGTATGTAGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001009496 (LOC497796), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652802-S	ILMN_269566	POLR3H_PREDICTED	XM_001077109.1	XM_001077109.1		300088	109482539	XM_001077109.1	Polr3h_predicted	XP_001077109.1	ILMN_1359985	0005080047	S	1052	CAGGGCTGAGGAACCCAGGGCCTCTTTTGTGTTAGGCAGGTGTTGTACTA				7q34	PREDICTED: Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide H (predicted) (Polr3h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646174-S	ILMN_49029	LOC502678	XM_578175.1	XM_578175.1		502678	62646174	XM_578175.1	LOC502678	XP_578175.1	ILMN_1375033	0006660184	S	307	GGTATGAGAACTGGAAAGAGGTGCTAAGGTGGCTCGCCCACAGCCAAGGC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L18 (LOC502678), mRNA.					
Rattus norvegicus	RefSeq	GI_62641180-S	ILMN_264698	LOC687406	XM_001075264.1	XM_001075264.1		687406	109462726	XM_001075264.1	LOC687406	XP_001075264.1	ILMN_1348824	0003390372	S	1231	CCCTGTGAGTGGACACGACATCAGGAAAGTGGGCATTTCTTCAGGGAAGG					PREDICTED: Rattus norvegicus similar to tRNA nucleotidyl transferase, CCA-adding, 1, transcript variant 1 (LOC687406), mRNA.					
Rattus norvegicus	RefSeq	GI_62665454-S	ILMN_288335	RGD1560667_PREDICTED	XM_001054626.1	XM_001054626.1		307938	109509064	XM_001054626.1	RGD1560667_predicted	XP_001054626.1	ILMN_1362556	0004010280	S	3007	ACGTGGATGGGGTCTTCATGCCTGCCCTCAGCCTCAACCGAAACGTGCAG				19q12	PREDICTED: Rattus norvegicus similar to TRIM9-like protein TNL (predicted) (RGD1560667_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650343-S	ILMN_54813	LOC500618	XM_580095.1	XM_580095.1		500618	62650343	XM_580095.1	LOC500618	XP_580095.1	ILMN_1369267	0006770402	S	91	ACCAGTGAGAGGAGAAGACCCTGGTCCTGCCAAAGCTGGACAACAACCCC					PREDICTED: Rattus norvegicus LOC500618 (LOC500618), mRNA.					
Rattus norvegicus	RefSeq	GI_62653758-S	ILMN_266171	RGD1562618_PREDICTED	XM_001072696.1	XM_001072696.1		501007	109484776	XM_001072696.1	RGD1562618_predicted	XP_001072696.1	ILMN_1369581	0003360736	S	1396	CCCGGAGGGTCACAAGGAACAGCAGCACTCAGACAGTATCAGACAAGAGC				8q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6030419C18 gene (predicted) (RGD1562618_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114349-S	ILMN_276127	LOC362921	NM_001008878.1	NM_001008878.1		362921	57114349	NM_001008878.1	LOC362921	NP_001008878.1	ILMN_1350813	0003710368	S	149	CTTCCTGCTAAGGCCATGTACATTGGAACAACCACAAGAGTTAGGCGACC	7	-	97749232-97749237:97754140-97754167:97764935-97764950	7q33	Rattus norvegicus Ac2-224 (LOC362921), mRNA.					
Rattus norvegicus	RefSeq	GI_62651406-S	ILMN_62412	LOC299488	XM_234709.3	XM_234709.3		299488	62651406	XM_234709.3	LOC299488	XP_234709.3	ILMN_1357933	0007050082	S	3955	ATCGGTCACTCCTCCAGGAAAAGAGCTAAGACCTGCTGAGGTGACTGCAG				6q33	PREDICTED: Rattus norvegicus similar to chr2 synaptotagmin (LOC299488), mRNA.					
Rattus norvegicus	RefSeq	GI_14091761-S	ILMN_277257	KCNQ1	NM_032073.1	NM_032073.1		84020	14091761	NM_032073.1	Kcnq1	NP_114462.1	ILMN_1370502	0000150215	S	2784	TGCCTCCTCCTTGCTGGTCAGAGGTGCCGGAGAGATGTTCAGACTCCAGT	1	+	203803528-203803577	1q41	Rattus norvegicus potassium voltage-gated channel, subfamily Q, member 1 (Kcnq1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself [goid 6349] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; Any mechanism, at the level of transcription or post-transcription, causing long-term gene inactivation [goid 16458] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IDA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15271] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kvlqt1	Kvlqt1
Rattus norvegicus	RefSeq	GI_62644137-S	ILMN_60970	LOC499686	XM_575009.1	XM_575009.1		499686	62644137	XM_575009.1	LOC499686	XP_575009.1	ILMN_1360100	0004610605	S	1585	GCAGCCGAGGACACAAGGTCAAAACCACCAAGGTCACACGGTAACTCTCG					PREDICTED: Rattus norvegicus similar to TAFA3 (LOC499686), mRNA.					
Rattus norvegicus	RefSeq	GI_62646274-S	ILMN_53640	PTPRT_PREDICTED	XM_342568.2	XM_342568.2		362263	62646274	XM_342568.2	Ptprt_predicted	XP_342569.2	ILMN_1351085	0005390438	S	5151	ATCACTGGGGTCAACACCAAGGATGCAGCTGAACAGCAGCGCCAGGATGA				3q42	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, T (predicted) (Ptprt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56961637-S	ILMN_269307	PKIG	NM_153469.4	NM_153469.4		266709	56961637	NM_153469.4	Pkig	NP_703199.1	ILMN_1360205	0003520064	S	811	GCAGCTCTAAGTTCCCTCACAGAGCCTCACAGATCCAGTTTTGGGAAAGG	3	+	154635767-154635816	3q42	Rattus norvegicus protein kinase (cAMP-dependent, catalytic) inhibitor gamma (Pkig), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus [goid 42308] [evidence ISS]	Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence IMP]; Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence IEA]; Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	MGC108574	MGC108574
Rattus norvegicus	RefSeq	GI_18677744-S	ILMN_289847	FGF3	NM_130817.1	NM_130817.1		170633	18677744	NM_130817.1	Fgf3	NP_570830.1	ILMN_1371906	0006520170	S	620	AACCCAGGCAGCGGAGGCAGAAGAAGCAGAGCCCAGGTGATCATGGCAAA	1	+	205273286-205273335	1q42	Rattus norvegicus fibroblast growth factor 3 (Fgf3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence IEA]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence IEA]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Int2	Int2
Rattus norvegicus	RefSeq	GI_62646558-S	ILMN_68708	RGD1561282_PREDICTED	XM_580040.2	XM_580040.2		499958	109469373	XM_580040.2	RGD1561282_predicted	XP_580040.2	ILMN_1358235	0003130008	S	592	CTGCCGAATATCCTACAGGATCCAGCAGCCAAAGAAGCAGGCGGTACAGC	3	+	170808136-170808154:170808338-170808368	3q43	PREDICTED: Rattus norvegicus RGD1561282 (predicted) (RGD1561282_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981513-S	ILMN_288518	SCN5A	NM_013125.1	NM_013125.1		25665	6981513	NM_013125.1	Scn5a	NP_037257.1	ILMN_1359371	0004280097	S	7195	CAAAGGCTGAGGGAAGAGAGGGCTGTTCCACATGGGCCGCTGAACTGTGT	8	-	124447679-124447728	8q32	Rattus norvegicus sodium channel, voltage-gated, type 5, alpha subunit (Scn5a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence TAS]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Specialised type of cell-cell junction in cardiac muscle, which mediates mechanical and electrochemical integration between the individual cardiomyocytes. Consist of three different kinds of substructures: adherens junctions, desmosomes and gap junctions [goid 14704] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence TAS]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	SCAL	SCAL
Rattus norvegicus	RefSeq	GI_62648295-S	ILMN_61877	LOC500355	XM_575709.1	XM_575709.1		500355	62648295	XM_575709.1	LOC500355	XP_575709.1	ILMN_1355164	0006290402	S	1220	GCTGTGGGGCACATCAGCAGATTCATTTTCGGTTTATCCTTCTTACGCTG					PREDICTED: Rattus norvegicus similar to Deoxyribose-phosphate aldolase-like (LOC500355), mRNA.					
Rattus norvegicus	RefSeq	GI_62641083-S	ILMN_266868	LOC690115	XM_001073319.1	XM_001073319.1		690115	109459191	XM_001073319.1	LOC690115	XP_001073319.1	ILMN_1362783	0005910114	S	6737	TTCCTAAGATGGGACTGCTGCTGATTGGGTTACAACTACAGCACGCGGCG	1	+	163466898-163466947	1q33	PREDICTED: Rattus norvegicus similar to Dynein heavy chain at 36C CG5526-PA (LOC690115), mRNA.					
Rattus norvegicus	RefSeq	GI_62663781-S	ILMN_270714	AKR1C12_PREDICTED	XM_001068364.1	XM_001068364.1		361266	109506120	XM_001068364.1	Akr1c12_predicted	XP_001068364.1	ILMN_1370818	0006370138	S	1022	GGAGCTAGTTATGATTTCTACCTGCCATCCCTGTGTGTGGACAGTGATGC				17q12.3	PREDICTED: Rattus norvegicus aldo-keto reductase family 1, member C12 (predicted) (Akr1c12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576772	ILMN_299092	OLR833	NM_001000408.1	NM_001000408.1		298397	47576772	NM_001000408.1	Olr833	NP_001000408.1	ILMN_1649721	0005390270	S	855	CGCCTTCATCTACAGTCTGAGGAACACAGAGGTGAGGGCTGCTGTCACAG	5	-	60178397-60178446	5q22	Rattus norvegicus olfactory receptor 833 (Olr833), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr833	Olr833
Rattus norvegicus	RefSeq	GI_62642873-S	ILMN_65311	SOLT_PREDICTED	XM_215471.4	XM_215471.4		294712	109464342	XM_215471.4	Solt_predicted	XP_215471.3	ILMN_1370245	0000630053	S	886	CTGCTTCTGCGTTATGGAATTGCTTTGAGACATCCAGAAGATCCATCCCG	2	+	35184563-35184612	2q13	PREDICTED: Rattus norvegicus SoxLZ/Sox6 leucine zipper binding protein in testis (predicted) (Solt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393255-S	ILMN_266614	DIO3	NM_017210.1	NM_017210.1		29475	8393255	NM_017210.1	Dio3	NP_058906.2	ILMN_1348818	0004070551	S	1552	GGGTGAAAGAGGGACATGGTAAGGGGTGGGCTTCAGGACCAAAGGAAGCG	6|NW_047772.1	+	162284-162333		Rattus norvegicus deiodinase, iodothyronine, type III (Dio3), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42404] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence TAS]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence ISS]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Catalysis of the reaction: 3,3',5'-triiodo-L-thyronine + iodide + A + H+ = L-thyroxine + AH2 [goid 33798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649738-S	ILMN_294093	SERINC2	NM_001031656.1	NM_001031656.1		313057	72255536	NM_001031656.1	Serinc2	NP_001026826.1	ILMN_1361153	0006290156	S	1631	TCTTAGGGTCCCGAGAAGAGGGCCTGAAAGGAGAGAGTGGTCCAGAGCTG	5	-	149279264-149279313	5q36	Rattus norvegicus serine incorporator 2 (Serinc2), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways involving phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. They are important constituents of cell membranes [goid 6658] [evidence IDA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence ISS]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor [goid 51347] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence ISS]	MGC116219; Tde2l	MGC116219; Tde2l
Rattus norvegicus	RefSeq	GI_52138597-S	ILMN_279516	AQP8	NM_019158.2	NM_019158.2		29172	52138597	NM_019158.2	Aqp8	NP_062031.1	ILMN_1367107	0000060364	S	1374	CTGTTACAGAAGGGCTTTCAGGAGCCCAAAGATCTCCTTGCCTCCCCAGC	1	+	182337202-182337251	1q36	Rattus norvegicus aquaporin 8 (Aqp8), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An apical plasma membrane part that forms a narrow enfolded luminal membrane channel, lined with numerous microvilli, that appears to extend into the cytoplasm of the cell. A specialized network of intracellular canaliculi is a characteristic feature of parietal cells of the gastric mucosa in vertebrates [goid 46691] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence NAS];  [goid 15722] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence TAS]	MGC93492	MGC93492
Rattus norvegicus	RefSeq	GI_62665144-S	ILMN_56888	HSF4_PREDICTED	XM_214668.3	XM_214668.3		291960	62665144	XM_214668.3	Hsf4_predicted	XP_214668.3	ILMN_1362609	0005720270	S	1322	TGGGAAAGACCACACGCTGGGAACCCCACTCATGCTAGATGTTCAGGCGG				19q11	PREDICTED: Rattus norvegicus heat shock transcription factor 4 (predicted) (Hsf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881810-S	ILMN_47872	LOC367956	XM_346368.1	XM_346368.1		367956	34881810	XM_346368.1	LOC367956	XP_346369.1	ILMN_1370331	0005340156	S	623	TAGTTCTGTACTTACTCCCAGGTTCCGCCTCTGCCTGACCAGACTGCTGC				Xq36	PREDICTED: Rattus norvegicus similar to leucine zipper, down-regulated in cancer 1 (LOC367956), mRNA.					
Rattus norvegicus	RefSeq	GI_62663763-S	ILMN_67276	RGD1564999_PREDICTED	XM_225498.3	XM_225498.3		291266	109505165	XM_225498.3	RGD1564999_predicted	XP_225498.1	ILMN_1368859	0006450050	S	677	GAGTATGAGGAACAGGAAATCAGACACTGGCTGTGAGGATGCCCCAGTCC	17	-	72412316-72412358:72412359-72412365	17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl-diphosphate delta isomerase 2 (predicted) (RGD1564999_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786185-S	ILMN_298134	ROD1	NM_031346.1	NM_031346.1		83515	13786185	NM_031346.1	Rod1	NP_112636.1	ILMN_1352656	0005390047	S	2408	GCAAAGTGTTGCAACTGTCCCCAGGGAAATAGAAGTGAAATTCAGCCTGG	5	-	77551728-77551777	5q24	Rattus norvegicus ROD1 regulator of differentiation 1 (S. pombe) (Rod1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence NAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655689-S	ILMN_282044	RGD1564638_PREDICTED	XM_001079060.1	XM_001079060.1		287060	109489707	XM_001079060.1	RGD1564638_predicted	XP_001079060.1	ILMN_1359511	0004920670	S	2056	GCACAGCCCTGGCCCCAAGTGCAAGCTGCTATACTACTGTGAAGTGCTAG				10q12	PREDICTED: Rattus norvegicus similar to KIAA0420 (predicted) (RGD1564638_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644644-S	ILMN_271531	PAPSS1_PREDICTED	XM_001077181.1	XM_001077181.1		295443	109467645	XM_001077181.1	Papss1_predicted	XP_001077181.1	ILMN_1350749	0000070390	S	656	CAGAGGCCCCGGAACTGGTGCTGAAAACGGATTCTTGTGATGTCAACGAC				2q43	PREDICTED: Rattus norvegicus 3'-phosphoadenosine 5'-phosphosulfate synthase 1 (predicted) (Papss1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644389-S	ILMN_271531	PAPSS1_PREDICTED	XM_001077181.1	XM_001077181.1		295443	109467645	XM_001077181.1	Papss1_predicted	XP_001077181.1	ILMN_1372628	0004280021	S	1933	TTAGAGAAAGCCTAACTTCCTGAGCCAGGCACTCTGCCAGGGATGCAGGG				2q43	PREDICTED: Rattus norvegicus 3'-phosphoadenosine 5'-phosphosulfate synthase 1 (predicted) (Papss1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662494-S	ILMN_281589	RGD1559708_PREDICTED	XM_001072296.1	XM_001072296.1		290678	109504045	XM_001072296.1	RGD1559708_predicted	XP_001072296.1	ILMN_1356540	0005570441	S	338	GGCCTGCAAGATTCACAAGAGGGGAGACAGACACCTATAGAGGAGAGCTG				16p14	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1559708_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173765-S	ILMN_283884	LONP1	NM_133404.1	NM_133404.1		170916	19173765	NM_133404.1	Lonp1	NP_596895.1	ILMN_1363216	0001940458	S	2817	TGCGAGAGCACCAGGAAGCACTGGCTGTGGAAAGATGATGGGGGTGCAGT	Un|NW_047865.1	+	464334-464371:464372-464383		Rattus norvegicus lon peptidase 1, mitochondrial (Lonp1), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP [goid 6510] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP [goid 6510] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEP]; The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell [goid 43623] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the hydrolysis of peptide bonds [goid 4176] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the hydrolysis of peptide bonds [goid 4176] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	Lon	Lon
Rattus norvegicus	RefSeq	GI_62663877-S	ILMN_51855	TAF3_PREDICTED	XM_225559.3	XM_225559.3		307109	62663877	XM_225559.3	Taf3_predicted	XP_225559.3	ILMN_1350630	0002940114	S	3298	TGCGGAGCGTCGTGACCGAGACAGTCAGCACTTACGTGATCCGTGATGAG					PREDICTED: Rattus norvegicus TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27685190-S	ILMN_271206	RGD1565695_PREDICTED	XR_009319.1	XR_009319.1		294101	109463786	XR_009319.1	RGD1565695_predicted		ILMN_1373524	0005050088	S	581	AAAACTGACCCAGTACTGTCACTCCAAGGACGAGGAGAAGGCCACTCTCC				1q52	PREDICTED: Rattus norvegicus similar to Aldo-keto reductase family 1, member B8 (predicted) (RGD1565695_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526872-S	ILMN_295767	RFC3	NM_001009629.1	NM_001009629.1		288414	57526872	NM_001009629.1	Rfc3	NP_001009629.1	ILMN_1367660	0001500692	S	1094	AGAAGTTCATGGAGGACGGGCTGGAAGGCATGGTGTTCTGACTCGGCTCC	12	-	3224591-3224600:3224601-3224640	12p12	Rattus norvegicus replication factor C (activator 1) 3 (Rfc3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase [goid 5663] [evidence IEA]; A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase [goid 5663] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]	MGC109141	MGC109141
Rattus norvegicus	RefSeq	GI_62652919-S	ILMN_47929	RGD1563990_PREDICTED	XM_217014.4	XM_217014.4		300146	109481178	XM_217014.4	RGD1563990_predicted	XP_217014.4	ILMN_1365240	0002450458	S	3057	TGCAACCCTGGGGACAATGACAAAGGACAGGAAGACAGATGCCCTGCCAG	7	+	127581425-127581454:127581544-127581563	7q34	PREDICTED: Rattus norvegicus similar to 8430411H09Rik protein (predicted) (RGD1563990_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638752-S	ILMN_64947	LOC502270	XM_577731.1	XM_577731.1		502270	62638752	XM_577731.1	LOC502270	XP_577731.1	ILMN_1354894	0004560398	S	2382	GGGTGGACCAGGAATATAGCACATGCCCTGCTTTACACAGAACCATCTGG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502270), mRNA.					
Rattus norvegicus	RefSeq	GI_62658346-S	ILMN_297846	RGD1560561_PREDICTED	XM_001065827.1	XM_001065827.1		501794	109496385	XM_001065827.1	RGD1560561_predicted	XP_001065827.1	ILMN_1366049	0003520019	S	2188	GTTGTGGAGGTCTTCTCCATCTTGGTCTCCAGTGCAGGACTTCTTGGTTG				12p12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (predicted) (RGD1560561_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638574-S	ILMN_56375	LOC499027	XM_574319.1	XM_574319.1		499027	62638574	XM_574319.1	LOC499027	XP_574319.1	ILMN_1354743	0001580309	S	20	GAAAGGGCAGGCTATCCAGGTGCTGGCTTCACAACCAGGCTCCCTCATTG				1q11	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC499027), mRNA.					
Rattus norvegicus	RefSeq	GI_55926130-S	ILMN_264778	SLC35A4	NM_147140.2	NM_147140.2		257647	55926130	NM_147140.2	Slc35a4	NP_671481.2	ILMN_1351043	0003520095	S	2171	GGAAAGGTCAGAGGGAGCTGGGGCTTGACTCATCTCAGGGAACATTGCCC	18	+	29321537-29321586	18p11	Rattus norvegicus solute carrier family 35, member A4 (Slc35a4), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of nucleotide-sugars into, out of, within or between cells. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative [goid 15780] [evidence IEA]	Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative [goid 5338] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]	Plrr4; MGC93141; MGC93140; Plrr-4	Plrr4; MGC93141; MGC93140; Plrr-4
Rattus norvegicus	Unigene	Rn.94288	ILMN_160861	RN.94288	Rn.94288		Rn.94288		28838437	CB314674			ILMN_1530212	0004120538	S	783	TAGTATGGCGCTCAAATAAACAAACTCAGTCCAACATATTAACAGACACA					AGENCOURT_11524843 NICHD_Rr_Pit1 Rattus norvegicus cDNA clone IMAGE:6887991 5', mRNA					
Rattus norvegicus	RefSeq	GI_16758485-S	ILMN_278766	PHYH	NM_053674.1	NM_053674.1		114209	16758485	NM_053674.1	Phyh	NP_446126.1	ILMN_1350834	0003710162	S	849	GCCACTATGGCAGCTCCGACTGCAAATATATCAGCGTGAAGGGCACCAGT	17	-	84418970-84419019	17q12.3	Rattus norvegicus phytanoyl-CoA hydroxylase (Phyh), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	Pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway [goid 1561] [evidence TAS]; Pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway [goid 1561] [evidence ISS]; Pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway [goid 1561] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Catalysis of the reaction: phytanoyl-CoA + 2-oxoglutarate + O2 = 2-hydroxyphytanoyl-CoA + succinate + CO2 [goid 48244] [evidence IDA]; Catalysis of the reaction: phytanoyl-CoA + 2-oxoglutarate + O2 = 2-hydroxyphytanoyl-CoA + succinate + CO2 [goid 48244] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54292129-S	ILMN_271500	PON1	NM_032077.1	NM_032077.1		84024	54292129	NM_032077.1	Pon1	NP_114466.1	ILMN_1361089	0007000736	S	1070	GTGACCTGTGACAAGCTGGCTACACCCACATCATGGAAAGTGAGGCCATC	4	-	29936513-29936552:29936553-29936562	4q13	Rattus norvegicus paraoxonase 1 (Pon1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEP]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]	Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol [goid 4063] [evidence IDA]; Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol [goid 4063] [evidence IEA]; Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate [goid 4064] [evidence IEA]; Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate [goid 4064] [evidence ISS]; Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate [goid 4064] [evidence IEA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665097-S	ILMN_286425	GAB1_PREDICTED	XM_001070145.1	XM_001070145.1		361388	109508587	XM_001070145.1	Gab1_predicted	XP_001070145.1	ILMN_1349894	0006180440	S	2181	CTGGGAAGTCCACACCACCACGGAAGCAAAAGAACAGTGGTTCGGGCAGC				19q11	PREDICTED: Rattus norvegicus growth factor receptor bound protein 2-associated protein 1 (predicted) (Gab1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758405-S	ILMN_293992	NUPR1	NM_053611.1	NM_053611.1		113900	16758405	NM_053611.1	Nupr1	NP_446063.1	ILMN_1354048	0001190309	S	452	CCGGACCCAGCTAAAGGGCAAGTTAGGAGCGAGAAGCAGAGGGTAGATGG	1	-	185770401-185770450	1q36	Rattus norvegicus nuclear protein 1 (Nupr1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the initiation of apoptosis (programmed cell death) [goid 42771] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence ISS]		p8	p8
Rattus norvegicus	RefSeq	GI_62657880-S	ILMN_59129	SSG1	XM_573284.2	XM_573284.2		64387	109493223	XM_573284.2	Ssg1	XP_573284.1	ILMN_1362820	0004610601	S	3232	GTCACTGGGGATGCGCTGTCCAGAAGATGAGTATGCGGGATATGGTTACC	11	-	57223492-57223541	11q21	PREDICTED: Rattus norvegicus steroid sensitive gene 1 (Ssg1), mRNA.					
Rattus norvegicus	RefSeq	GI_6981399-S	ILMN_278483	PRKCG	NM_012628.1	NM_012628.1		24681	6981399	NM_012628.1	Prkcg	NP_036760.1	ILMN_1359563	0002320537	S	2696	CTGCTCCAGACTAAGATTCCAGATCAGCTCTCTGCATCCTTCAAGGCCCC	1	-	64146104-64146153	1q12	Rattus norvegicus protein kinase C, gamma (Prkcg), mRNA.				MGC105487; Prkcg; Prkc; PKCI; RATPKCI; PKC	MGC105487; Prkcg; Prkc; PKCI; RATPKCI; PKC
Rattus norvegicus	RefSeq	GI_62652606-S	ILMN_285483	LOC500893	NM_001029926.1	NM_001029926.1		500893	71361638	NM_001029926.1	LOC500893	NP_001025097.1	ILMN_1365034	0002760400	S	968	AGCGCCAAGAAGACTGCTGAGGTGGGCAGTAGTTTGAGTCGAGACTGCCG	7	+	113583317-113583366	7q34	Rattus norvegicus similar to GLI-Kruppel family member GLI4 (LOC500893), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114422	MGC114422
Rattus norvegicus	RefSeq	GI_27663927-S	ILMN_262586	RGD1564004_PREDICTED	XM_001066641.1	XM_001066641.1		299038	109512003	XM_001066641.1	RGD1564004_predicted	XP_001066641.1	ILMN_1359927	0001340722	S	821	TCTCGCCTGGCTGATTCCCTGGTTGGGAAGGCAGTGGGGCATGTGTTCGA				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9630042H07 gene (predicted) (RGD1564004_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652002	ILMN_70292	GAS2L3_PREDICTED	XM_235046.3	XM_235046.3		314716	62652002	XM_235046.3	Gas2l3_predicted	XP_235046.2	ILMN_1650488	0003610398	S	1007	GGTGTACCTGTGTCTTCTTGAGATTGGCCGCGTCGTGTCAAGGTGCGTAT					PREDICTED: Rattus norvegicus growth arrest-specific 2 like 3 (predicted) (Gas2l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657904-S	ILMN_60457	LOC362034	XM_342335.2	XM_342335.2		362034	62657904	XM_342335.2	LOC362034	XP_342336.2	ILMN_1366555	0002690286	S	179	GAAACGGCAGCACAGATCTTCCTGGTTGCTGCTGCCGCGGAGAGCTCTTG					PREDICTED: Rattus norvegicus similar to Ac1002 (LOC362034), mRNA.					
Rattus norvegicus	RefSeq	GI_62660089-S	ILMN_282064	ZFP644_PREDICTED	XM_001062824.1	XM_001062824.1		305127	109500250	XM_001062824.1	Zfp644_predicted	XP_001062824.1	ILMN_1369757	0004730053	S	3714	GCGGCACATTGTAAACGCTAACCTTCCACGGACTGGAGCTGGCATGGTGG				14p22	PREDICTED: Rattus norvegicus zinc finger protein 644 (predicted) (Zfp644_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643824	ILMN_66945	S100A16_PREDICTED	XM_342291.3	XM_342291.3		361991	109465100	XM_342291.3	S100a16_predicted	XP_342292.1	ILMN_1649818	0000380332	S	793	GGCCCCCAAGACTTTTCCCACTTGTCGAGTCTGTGTGCTCTTGCAGTGTC	2	+	182812955-182813004	2q34	PREDICTED: Rattus norvegicus S100 calcium binding protein A16 (predicted) (S100a16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648401-S	ILMN_66867	LOC502896	XM_578398.1	XM_578398.1		502896	62648401	XM_578398.1	LOC502896	XP_578398.1	ILMN_2040640	0006250291	S	195	CTCTGGCAGGCAGAACTCAACACCAACATCGATGACCAGCGCCTTCTATG					PREDICTED: Rattus norvegicus similar to the first amino acid was determined to be isoleucine rather than methionine by comparison to mTEF1 (ascession # L13853); TEF-1-related factor (LOC502896), mRNA.					
Rattus norvegicus	RefSeq	GI_62661147	ILMN_63573	LOC361016	XM_341291.2	XM_341291.2		361016	62661147	XM_341291.2	LOC361016	XP_341292.2	ILMN_1650098	0000780301	S	2029	GACTCATGGCTGTCTGAGGCTCCAGTTCTCCGTACTTACAGCTCCACTGC				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933406L09 (LOC361016), mRNA.					
Rattus norvegicus	RefSeq	GI_62658063-S	ILMN_69187	LOC303835	XM_221332.3	XM_221332.3		303835	62658063	XM_221332.3	LOC303835	XP_221332.3	ILMN_1358703	0001740575	S	906	GGGGTTGGTTAGGGGTGGGGAGAGGGACACATGGAATTGATAGTGGGAAG				11q23	PREDICTED: Rattus norvegicus similar to Receptor transporting protein 2 (LOC303835), mRNA.					
Rattus norvegicus	RefSeq	GI_62657064-S	ILMN_284310	PLEKHH3	NM_001037202.1	NM_001037202.1		360634	81295390	NM_001037202.1	Plekhh3	NP_001032279.1	ILMN_1374518	0001410484	S	2729	CAGCACCAAGTTCTGGAAAAGCCCCAGGGACAGTCTGGCTGCTTGAGGCA	10	-	90183899-90183948	10q32.1	Rattus norvegicus pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 (Plekhh3), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]		RGD1304854; MGC124855	RGD1304854; MGC124855
Rattus norvegicus	RefSeq	GI_62658741-S	ILMN_277702	BAZ1B	XM_001077467.1	XM_001077467.1		368002	109497200	XM_001077467.1	Baz1b	XP_001077467.1	ILMN_1350178	0006760524	S	5651	TCCAGGGGACGAAGACAGAAGAAGTAAAGAGGCAGGGTCCTAGTGAGGGA				12q12	PREDICTED: Rattus norvegicus bromodomain adjacent to zinc finger domain protein 1B (Baz1b), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A region of heterochromatin located near the centromere of a chromosome [goid 5721] [evidence ISS]; A region of heterochromatin located near the centromere of a chromosome [goid 5721] [evidence IEA]	The formation or destruction of chromatin structures [goid 6333] [evidence ISS]; The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506504-S	ILMN_280299	COQ3	NM_019187.1	NM_019187.1		29309	9506504	NM_019187.1	Coq3	NP_062060.1	ILMN_1359089	0003870315	S	893	GCCAAAGTCTCCGGCAGCCCAAGTGTGCACGAGGGGCAGAGAAAATGAGA	5	-	36640824-36640873	5q21	Rattus norvegicus coenzyme Q3 homolog, methyltransferase (S. cerevisiae) (Coq3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 6071] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IMP]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: S-adenosyl-L-methionine + 3-hexaprenyl-4,5-dihydroxybenzoate = S-adenosyl-L-homocysteine + 3-hexaprenyl-4-hydroxy-5-methoxybenzoate [goid 4395] [evidence IMP]; Catalysis of the reaction: S-adenosyl-L-methionine + 3-hexaprenyl-4,5-dihydroxybenzoate = S-adenosyl-L-homocysteine + 3-hexaprenyl-4-hydroxy-5-methoxybenzoate [goid 4395] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the reaction: 2-polyprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine [goid 8425] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the reaction: 2-polyprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine [goid 8425] [evidence IEA]	MGC156658	MGC156658
Rattus norvegicus	RefSeq	GI_62644532-S	ILMN_283750	RGD1564206_PREDICTED	XR_009288.1	XR_009288.1		308021	109467767	XR_009288.1	RGD1564206_predicted		ILMN_1351585	0001500739	S	2945	CCTGAGAGAACTCCCTTCTCCCCTAATAACGAAGCAGCTGTACCAGGCCG				2q44	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13511 (predicted) (RGD1564206_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663981-S	ILMN_283845	APBB1IP	XM_001053610.1	XM_001053610.1		307171	109506250	XM_001053610.1	Apbb1ip	XP_001053610.1	ILMN_1368527	0005080500	S	1865	CCAAAAAGCTCCCAGTGCCCCCCAAGAGGCAAGAGAACCAAGGACTCCCT				17q12.3	PREDICTED: Rattus norvegicus amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein (Apbb1ip), mRNA.					
Rattus norvegicus	RefSeq	GI_62660614-S	ILMN_63319	EVC2_PREDICTED	XM_223550.3	XM_223550.3		289711	62660614	XM_223550.3	Evc2_predicted	XP_223550.3	ILMN_1361107	0001190647	S	4951	TTACCAAGAGCTAGAGGGGTCCCACCTTACCCCACGTTCCTCACACAGCC				14q21	PREDICTED: Rattus norvegicus Ellis van Creveld syndrome 2 (limbin) (predicted) (Evc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34865210-S	ILMN_161832	LOC362738	XM_343062.1	XM_343062.1			34865210	XM_343062.1	LOC362738		ILMN_2040094	0006370209	S	1471	GGGCCAGCAGGGATGAGGGCTTTTCCGTTTCATCCTCGGCTGATAGATAG					Rattus norvegicus similar to sorting nexin 6 (LOC362738), mRNA.					
Rattus norvegicus	RefSeq	GI_16758921-S	ILMN_268141	CUZD1	NM_054005.1	NM_054005.1		117179	16758921	NM_054005.1	Cuzd1	NP_446457.1	ILMN_1357576	0001990438	S	2112	GGGTGGCCGATGAAAAAGTTCTCTGTGCCTACGAGGGTTAGGGCTTTCCC	1	-	190887627-190887676	1q41	Rattus norvegicus CUB and zona pellucida-like domains 1 (Cuzd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence ISS]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence ISS]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence ISS]	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence TAS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence NAS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IDA]; The proteolytic processing of trypsinogen to the active form, trypsin [goid 32023] [evidence ISS]		ERG1; Itmap1; Uo; UO-44; Utczp	ERG1; Itmap1; Uo; UO-44; Utczp
Rattus norvegicus	RefSeq	GI_62641318-S	ILMN_57564	LOC308996	XM_219350.3	XM_219350.3		308996	62641318	XM_219350.3	LOC308996	XP_219350.3	ILMN_1350298	0003130110	S	2149	ATGAGAATTGGGCTATGAAGGGGTTGGAGGGAGGCCAGACAGGCAGCAGG					PREDICTED: Rattus norvegicus similar to cDNA sequence BC026432 (predicted) (LOC308996), mRNA.					
Rattus norvegicus	RefSeq	GI_62663287-A	ILMN_284816	SHC3	XM_001054242.1	XM_001054242.1		114858	109505498	XM_001054242.1	Shc3	XP_001054242.1	ILMN_1376852	0004760204	S	2275	GGCCCTGTGTTGAGCAAAGCTGCGTCTGTGGAGTGTATCAGCCCCGTTAC				17p14	PREDICTED: Rattus norvegicus src homology 2 domain-containing transforming protein C3 (Shc3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 7970708] [evidence EXP]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]	Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence TAS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655278-S	ILMN_54290	LOC501172	XM_576599.1	XM_576599.1		501172	62655278	XM_576599.1	LOC501172	XP_576599.1	ILMN_1352770	0001850736	S	569	CCATTGTCTGCTGGTTGTTCGAGAGAAAAATGACTGATCCTGAACTGTCC					PREDICTED: Rattus norvegicus similar to LRRGT00094 (LOC501172), mRNA.					
Rattus norvegicus	RefSeq	GI_62664126-S	ILMN_262916	MGC116121	NM_001024905.1	NM_001024905.1		498830	67846087	NM_001024905.1	MGC116121	NP_001020076.1	ILMN_1356696	0005270278	S	512	CAGGCTCTACAAACATCAGTCAGAGTGTGCATGGCTCCAAAGGCAGGAGC	18	+	16273325-16273374	18p12	Rattus norvegicus similar to RIKEN cDNA 2700062C07 (MGC116121), mRNA.					
Rattus norvegicus	RefSeq	GI_62641942-I	ILMN_66206	MSX3	XM_577845.1	XM_577845.1		114504	62641942	XM_577845.1	Msx3	XP_577845.1	ILMN_1376159	0000940707	S	415	CCCGGTCTCAGGCCCTGAAAAGCGACCGCACTGTCAAAGCTCGAAAATCT				1q41	PREDICTED: Rattus norvegicus homeo box, msh-like 3 (Msx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576058-S	ILMN_264601	OLR1424	NM_001000779.1	NM_001000779.1		405056	47576058	NM_001000779.1	Olr1424	NP_001000779.1	ILMN_1352979	0005360021	S	311	CACTTGTGGGGTCAGAATTTTTCCTTCTAGCTGCCATGTCTTATGACCGC	10	-	44386298-44386347	10q22	Rattus norvegicus olfactory receptor 1424 (Olr1424), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1424	Olr1424
Rattus norvegicus	RefSeq	GI_62654738-S	ILMN_49942	GPR110_PREDICTED	XM_217359.4	XM_217359.4		301266	109485838	XM_217359.4	Gpr110_predicted	XP_217359.3	ILMN_1354689	0000580121	S	2394	GCTAGGGCTCACCTGGGGCTTTGGCATAGGAACAATGGCAGACAGTCAGA	9	-	13373044-13373093	9q12	PREDICTED: Rattus norvegicus G protein-coupled receptor 110 (predicted) (Gpr110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652093-S	ILMN_51735	LOC314814	XM_235115.3	XM_235115.3		314814	62652093	XM_235115.3	LOC314814	XP_235115.3	ILMN_1358360	0002970541	S	2066	GGCGGGAACGAGAGACACCCTGCTTGGCTTCCACCTTGCATTTCGGAACA				7q21	PREDICTED: Rattus norvegicus similar to neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3 (predicted) (LOC314814), mRNA.					
Rattus norvegicus	RefSeq	GI_62652865-S	ILMN_279465	RGD1566029_PREDICTED	XM_001078061.1	XM_001078061.1		500913	109482661	XM_001078061.1	RGD1566029_predicted	XP_001078061.1	ILMN_1353626	0002630129	S	694	ACGATATTTGCAAGGTTTACCTGACGCGGTGGGGGATCCAGGGACGGTGG				7q34	PREDICTED: Rattus norvegicus similar to mKIAA1644 protein (predicted) (RGD1566029_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662413-S	ILMN_273364	DPDE1	XM_001070301.1	XM_001070301.1		290646	109503973	XM_001070301.1	Dpde1	XP_001070301.1	ILMN_1372637	0003140079	S	1873	AGAGAGTGGTATCAGAGTAGGGTTCCCTGCAGCCCTCCACACGCCATTGG				16p14	PREDICTED: Rattus norvegicus phosphodiesterase 4C, cAMP-specific (Dpde1), mRNA.					
Rattus norvegicus	RefSeq	GI_62660810-S	ILMN_274991	ZPBP	NM_001025139.1	NM_001025139.1		498415	68342006	NM_001025139.1	Zpbp	NP_001020310.1	ILMN_1366648	0004730070	S	739	CGTGAACCTCGTTTTTATTACCAATTCACAGCCCGATACCATGCAGCTCC	14	-	92260008-92260057	14q21	Rattus norvegicus zona pellucida binding protein (Zpbp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_34870012-S	ILMN_59644	MCM4	XM_344048.2	XM_344048.2		29728	109493686	XM_344048.2	Mcm4	XP_344049.1	ILMN_2039387	0007650139	S	2456	ATCGATGTGGAAGAGGCAAAACGCCTTCACCGGGAGGCTCTGAAGCAGTC	11	+	87181366-87181415	11q23	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 4 homolog (S. cerevisiae) (Mcm4), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication [goid 6268] [evidence IEA]; The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication [goid 6268] [evidence ISS]	Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix [goid 3678] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix [goid 3678] [evidence ISS]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642399-S	ILMN_284384	RGD1564887_PREDICTED	XM_001058595.1	XM_001058595.1		499363	109463945	XM_001058595.1	RGD1564887_predicted	XP_001058595.1	ILMN_1362040	0006980603	S	957	TGGTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAAATCTCAGTTCAA				1q54	PREDICTED: Rattus norvegicus similar to 9130011E15Rik protein (predicted) (RGD1564887_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642397	ILMN_284384	RGD1564887_PREDICTED	XM_001058595.1	XM_001058595.1		499363	109463945	XM_001058595.1	RGD1564887_predicted	XP_001058595.1	ILMN_1650398	0001660064	S	2556	GCTGATGCCACATCCTGTTTCTTTTTGGACCTGGAGCTGAGCAAGGCCCC				1q54	PREDICTED: Rattus norvegicus similar to 9130011E15Rik protein (predicted) (RGD1564887_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58219527-S	ILMN_290475	ZC3H15	NM_001010963.1	NM_001010963.1		362154	58219527	NM_001010963.1	Zc3h15	NP_001010963.1	ILMN_1355469	0001410292	S	1578	CCACTCATGTAGGAAGTGTAACCGCTTTTCCAGCTTTTGTTTTCTTTGGG	3	+	66840275-66840324	3q24	Rattus norvegicus zinc finger CCCH-type containing 15 (Zc3h15), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95079	MGC95079
Rattus norvegicus	RefSeq	GI_62639352-S	ILMN_294331	RGD1560986_PREDICTED	XM_001079110.1	XM_001079110.1		292786	109461655	XM_001079110.1	RGD1560986_predicted	XP_001079110.1	ILMN_1371749	0006860239	S	661	AGGGCACTGAGGCAAGGGCAGATCAGAAGCTCCCCCAAAACCCCAGCATT				1q21	PREDICTED: Rattus norvegicus similar to Gene model 1082 (predicted) (RGD1560986_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658953-S	ILMN_57784	LOC304509	XM_222198.3	XM_222198.3		304509	62658953	XM_222198.3	LOC304509	XP_222198.3	ILMN_1364875	0000840725	S	959	ACCACTCACTGCTCAACACTCCTTTTGGGACAGCCCACTGCTGGGACACC				12q16	PREDICTED: Rattus norvegicus hypothetical LOC304509 (LOC304509), mRNA.					
Rattus norvegicus	RefSeq	GI_62638728-S	ILMN_63707	LOC365145	XM_577722.1	XM_577722.1		365145	62638728	XM_577722.1	LOC365145	XP_577722.1	ILMN_1367870	0006980671	S	1558	GCTTGCCAAGGAGAAAGAAACCTCGCCTGGGGCAGATCAGAATCTCACCC				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365145), mRNA.					
Rattus norvegicus	RefSeq	GI_62651670	ILMN_53572	LOC366819	XM_576175.1	XM_576175.1		366819	62651670	XM_576175.1	LOC366819	XP_576175.1	ILMN_1650331	0005570242	S	433	CTCAATCCAGGGAAGGCAATACTCTCACTCACGCAGCAGAAGCGGCGGAA					PREDICTED: Rattus norvegicus similar to Sfrs7 protein (LOC366819), mRNA.					
Rattus norvegicus	RefSeq	GI_56799427-S	ILMN_278975	PPIL3	NM_175707.3	NM_175707.3		301432	56799427	NM_175707.3	Ppil3	NP_783638.1	ILMN_1369809	0001940280	S	931	GAGCCCTGGGGTTCACGCCCCATCTTGAACATATTCTGTGCCACGGCTGT	9	-	57089504-57089553	9q31	Rattus norvegicus peptidylprolyl isomerase (cyclophilin)-like 3 (Ppil3), mRNA.	A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC105285; Cyp10l	MGC105285; Cyp10l
Rattus norvegicus	RefSeq	GI_62654377	ILMN_54017	RGD1564138_PREDICTED	XM_345989.3	XM_345989.3		367175	109484001	XM_345989.3	RGD1564138_predicted	XP_345990.2	ILMN_1650136	0004610446	S	74	TGCTAACCATCAAGGGTGGATTCTGGGAAAGTGGCAACCTGGCTCAACCA	8	+	115332754-115332803	8q32	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1564138_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654484-S	ILMN_267651	XYLB	NM_001033704.1	NM_001033704.1		316067	76096347	NM_001033704.1	Xylb	NP_001028876.1	ILMN_1356389	0003780400	S	2481	CCCACAGCCTCACGTATTCTAGGCAAACACTCTACCTGCTGAGCCGCACG	8	+	124353325-124353374	8q32	Rattus norvegicus xylulokinase homolog (H. influenzae) (Xylb), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide [goid 42732] [evidence IEA]	Catalysis of the reaction: ATP + D-xylulose = ADP + D-xylulose 5-phosphate [goid 4856] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC124790	MGC124790
Rattus norvegicus	RefSeq	GI_6978494-S	ILMN_291463	AMBN	NM_012900.1	NM_012900.1		25376	6978494	NM_012900.1	Ambn	NP_037032.1	ILMN_1360350	0003520152	S	1680	TATGCCCAGGAAATGTGACACCGCTTCTTTCTCTACGCCAAAGCACTTAG	14	-	21183511-21183560	14p21	Rattus norvegicus ameloblastin (Ambn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]	The action of a molecule that contributes to the structural integrity of tooth enamel [goid 30345] [evidence TAS]; The action of a molecule that contributes to the structural integrity of tooth enamel [goid 30345] [evidence IEA]; The action of a molecule that contributes to the structural integrity of tooth enamel [goid 30345] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_30842803-S	ILMN_270503	TRIM50	NM_181080.1	NM_181080.1		288596	30842803	NM_181080.1	Trim50	NP_851594.1	ILMN_1349713	0003940286	S	1298	ATGATCTTCGGGCACTCTACACTTTCCAGGCTGACTTCCAGGGCAAGCTG	12	-	22455654-22455703	12q12	Rattus norvegicus tripartite motif-containing 50 (Trim50), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93065	MGC93065
Rattus norvegicus	RefSeq	GI_62661718-S	ILMN_291976	FNDC3A_PREDICTED	XM_224350.3	XM_224350.3		306022	62661718	XM_224350.3	Fndc3a_predicted	XP_224350.3	ILMN_1367087	0001450576	S	5772	GTGTACTTGCCATTTGAGCCTCACTGCAATGTTAGTGCAGAGGAGAAAAC	15	-	53124955-53125004	15p11	PREDICTED: Rattus norvegicus fibronectin type III domain containing 3a (predicted) (Fndc3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.101810	ILMN_60515	KUA_PREDICTED	XM_342588.3	XM_342588.3		362278	109469268	XM_342588.3	Kua_predicted	XP_342589.3	ILMN_1530432	0001190672	S	1713	TCTCCAGTCCTGAATTTTTGTTTCTTGAAGCAATGTATCATATACTCAAA	3	-	158778326-158778375	3q42	PREDICTED: Rattus norvegicus Kua homolog (predicted) (Kua_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646405-S	ILMN_60515	KUA_PREDICTED	XM_342588.3	XM_342588.3		362278	109469268	XM_342588.3	Kua_predicted	XP_342589.3	ILMN_1366790	0006290687	S	1810	TCCCCATACTGTCCCAAGTGCCGGGATCACAGGTGTATGCCACCATTCAC	3	-	158778229-158778278	3q42	PREDICTED: Rattus norvegicus Kua homolog (predicted) (Kua_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656482	ILMN_276885	GOSR1	NM_053584.2	NM_053584.2		94189	59624969	NM_053584.2	Gosr1	NP_446036.1	ILMN_1650692	0002360463	S	1366	AGCCCTGGGTCAACTACTGCCACCAGCACATCAGAATGGCGGGCCTTACA	10	+	67441241-67441290	10q26	Rattus norvegicus golgi SNAP receptor complex member 1 (Gosr1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IDA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IDA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence ISS]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence ISS]	p28	p28
Rattus norvegicus	RefSeq	GI_47576532-S	ILMN_271562	OLR876	NM_001000708.1	NM_001000708.1		404957	47576532	NM_001000708.1	Olr876	NP_001000708.1	ILMN_1358012	0003140102	S	581	GGGGTGAAGTGGGGAACCTCTTTGTCACCATCACTTTCGTTTTCACCCCC	7	+	2316934-2316983	7q11	Rattus norvegicus olfactory receptor 876 (Olr876), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr876	Olr876
Rattus norvegicus	RefSeq	GI_62658465-S	ILMN_269299	RGD1310193_PREDICTED	XM_001072224.1	XM_001072224.1		304289	109496612	XM_001072224.1	RGD1310193_predicted	XP_001072224.1	ILMN_1363260	0003170563	S	2225	CTGATTGACTGTGAGTGGCTTCTGTGAGGCTGGTATGGTGGGGTCTGTCC				12p11	PREDICTED: Rattus norvegicus similar to KCCR13L (predicted) (RGD1310193_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659313-S	ILMN_280031	TMEM81	NM_001017490.1	NM_001017490.1		498229	62945331	NM_001017490.1	Tmem81	NP_001017490.1	ILMN_1369774	0006380471	S	1339	GCTCAGGGCAGCATCCACCATTGTAGTCCGGTTTCCTCCATAACAGGTGC	13	+	45394464-45394513	13q13	Rattus norvegicus transmembrane protein 81 (Tmem81), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_53850627-S	ILMN_284946	NDUFS1	NM_001005550.1	NM_001005550.1		301458	53850627	NM_001005550.1	Ndufs1	NP_001005550.1	ILMN_1367557	0004120154	S	2185	CCAAGTGTGTCAAAGCCGTCACAGAAGGCGCTCAGGCAGTAGAGGAGCCA	9	-	61798384-61798433	9q31	Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 1 (Ndufs1), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone [goid 5747] [evidence ISS]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone [goid 5747] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP [goid 42773] [evidence IEA]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence ISS]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence ISS]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor [goid 3954] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence ISS]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence ISS]	MGC93795	MGC93795
Rattus norvegicus	RefSeq	GI_48040427-S	ILMN_283483	HABP2	NM_001001505.1	NM_001001505.1		292126	48040427	NM_001001505.1	Habp2	NP_001001505.1	ILMN_1369483	0005890338	S	2014	GACTGTTACTCTTCTGCCCACACCATCAGGGTCTTCCGCAGTCTCCATGC	1	+	262591352-262591401	1q55	Rattus norvegicus hyaluronan binding protein 2 (Habp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	PHBP; Habp	PHBP; Habp
Rattus norvegicus	RefSeq	GI_11693175-S	ILMN_297033	ARBP	NM_022402.1	NM_022402.1		64205	11693175	NM_022402.1	Arbp	NP_071797.1	ILMN_1357284	0004920563	S	958	ACATGGGATTCGGTCTCTTCGACTAAGCCCCTCACACCAAGTCAGCCTGC	12	-	42315804-42315828:42315829-42315853	12q16	Rattus norvegicus acidic ribosomal phosphoprotein P0 (Arbp), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663095-S	ILMN_57158	RGD1308544_PREDICTED	XM_341475.3	XM_341475.3		361192	109504550	XM_341475.3	RGD1308544_predicted	XP_341476.3	ILMN_1358837	0000130097	S	802	CCTGTAGCCGCAAGGAGGATAAGCACACACATATCTAAGGTGGTCCTGGC	17	-	5044216-5044265	17p14	PREDICTED: Rattus norvegicus LOC361192 (predicted) (RGD1308544_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14010874-S	ILMN_265201	PTMS	XM_001062784.1	XM_001062784.1		83801	109474215	XM_001062784.1	Ptms	XP_001062784.1	ILMN_1374140	0001690725	S	741	TGAAGCGGATCCCAAGAGGCAGAAGACAGAAAACGGGGCGTCGGCTTGAG				4q42	PREDICTED: Rattus norvegicus parathymosin (Ptms), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence TAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence TAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661611-S	ILMN_284547	RGD1565502_PREDICTED	XM_579833.1	XM_579833.1		498531	62661611	XM_579833.1	RGD1565502_predicted	XP_579833.1	ILMN_1372696	0006520008	S	1162	GCTGCAAAAATGAAGCTGTGCTTTCCTCACAGACCTGGGAAAATGCTTCC	15	+	42523471-42523520	15p12	PREDICTED: Rattus norvegicus RGD1565502 (predicted) (RGD1565502_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656006-S	ILMN_272534	TRIM7_PREDICTED	XM_001070008.1	XM_001070008.1		303089	109490604	XM_001070008.1	Trim7_predicted	XP_001070008.1	ILMN_1351323	0000060438	S	1536	GGAGGACATGCGCCACCTTTACACCTTCCGTGTCAACTTCCAGGAGCGAG				10q21	PREDICTED: Rattus norvegicus tripartite motif protein 7 (predicted) (Trim7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654009-S	ILMN_58682	LOC503218	XM_578742.1	XM_578742.1		503218	62654009	XM_578742.1	LOC503218	XP_578742.1	ILMN_1349071	0000060706	S	1201	GGCGACATGACAAGACATCAGCAACAGGAGCCTTCGAGTCAAGTTCAGGG					PREDICTED: Rattus norvegicus similar to teratocyte-specific carboxylesterase (LOC503218), mRNA.					
Rattus norvegicus	RefSeq	GI_62647568-S	ILMN_49842	LOC502821	XM_578321.1	XM_578321.1		502821	62647568	XM_578321.1	LOC502821	XP_578321.1	ILMN_1362788	0003450292	S	3	AGAGCTCTCACTAAACACCTAGGTCTCCTGATGCTCTGGCTCTCAGGTGC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa light chain VC region (LOC502821), mRNA.					
Rattus norvegicus	RefSeq	GI_13540657-A	ILMN_282003	BST1	NM_030848.1	NM_030848.1		81506	13540657	NM_030848.1	Bst1	NP_110475.1	ILMN_1376579	0006200021	S	1128	GCATTCGTGATTCGAGAAACGAGGCATTTATCTAGTCCTGCTTGGCAGGC				14q21	Rattus norvegicus bone marrow stromal cell antigen 1 (Bst1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose [goid 3953] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651739-S	ILMN_267090	RKHD1_PREDICTED	XM_001076492.1	XM_001076492.1		299613	109481571	XM_001076492.1	Rkhd1_predicted	XP_001076492.1	ILMN_1371106	0002810504	S	2351	GCCAAGAGGAGGGTAATGGGAGGGTATCCAAGGGGGGTCCCATCAACAGA				7q11	PREDICTED: Rattus norvegicus ring finger (C3HC4 type) and KH domain containing 1 (predicted) (Rkhd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50811816-S	ILMN_282131	PRM1	NM_001002850.1	NM_001002850.1		24685	50811816	NM_001002850.1	Prm1	NP_001002850.1	ILMN_1361448	0005550037	S	60	AAGATGTCGCAGACGGAGGAGGCGGTGCTGCAGGCGGAGGCGGCGAAGGT	10	+	4808413-4808459:4808551-4808553	10q11	Rattus norvegicus protamine 1 (Prm1), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nucleus [goid 6997] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nucleus [goid 6997] [evidence ISS]; The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Prm1	Prm1
Rattus norvegicus	RefSeq	GI_62658058-S	ILMN_68829	LOC498104	XM_573308.1	XM_573308.1		498104	62658058	XM_573308.1	LOC498104	XP_573308.1	ILMN_1360047	0000870176	S	413	CGGAGGAGAGGGTGAGTTCTGGGGACTGGAGTGGGAAATCAGCTTACAAG					PREDICTED: Rattus norvegicus similar to LIM domain containing preferred translocation partner in lipoma (LOC498104), mRNA.					
Rattus norvegicus	RefSeq	GI_20806170-S	ILMN_288803	CORO6	NM_139115.1	NM_139115.1		245982	20806170	NM_139115.1	Coro6	NP_620815.1	ILMN_1354563	0004210292	S	2626	CTGAGGAAGCCTAGCAAATGCAAGCTGGACTGAGGCCCCACCACGTAGCT	10	-	66646792-66646841	10q26	Rattus norvegicus coronin, actin binding protein 6 (Coro6), mRNA.				MGC112600	MGC112600
Rattus norvegicus	RefSeq	GI_62659408-S	ILMN_280616	ATP6V1G3_PREDICTED	XM_001065881.1	XM_001065881.1		289407	109498721	XM_001065881.1	Atp6v1g3_predicted	XP_001065881.1	ILMN_1365854	0000360736	S	676	CTCGTCCTTCCAAGCCCACAGAAAGAGTCGGGATATGCTCTGTTAGGATG				13q13	PREDICTED: Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit G3 (predicted) (Atp6v1g3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18034794-S	ILMN_282396	GABRA4	NM_080587.1	NM_080587.1		140675	18034794	NM_080587.1	Gabra4	NP_542154.1	ILMN_1363867	0002690242	S	1505	TCTGCTCGCCCGGCATTTGGAGCTAGACTTGGGCGCATTAAGACAACAGT	14	+	39122193-39122242	14p11	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 4 (Gabra4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence TAS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34865666-S	ILMN_280088	PI15_PREDICTED	XM_001062143.1	XM_001062143.1		301489	109475977	XM_001062143.1	Pi15_predicted	XP_001062143.1	ILMN_1358175	0001660068	S	813	GTTGGAGTGCCATGTTCATCTTGTCCCCCGAGTTATGGTGGAGCCTGTAC				5q11	PREDICTED: Rattus norvegicus protease inhibitor 15 (predicted) (Pi15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654138-S	ILMN_291925	ACY1	NM_001005383.1	NM_001005383.1		300981	52851386	NM_001005383.1	Acy1	NP_001005383.1	ILMN_1376357	0005700037	S	670	AACTCCATCTTGGCATTCCGGGAGAAGGAGAGGCAGAGGCTGCAGGCGAA	8	-	111578708-111578720:111578861-111578897	8q32	Rattus norvegicus aminoacylase 1 (Acy1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence TAS]	Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid [goid 4046] [evidence IDA]; Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid [goid 4046] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652849	ILMN_67250	LOC497825	XM_579363.1	XM_579363.1		497825	62652849	XM_579363.1	LOC497825	XP_579363.1	ILMN_1650702	0004810176	S	2886	CTAACCCCAGTGCCGGAAAGCTGAGGCAGGAAGACCGTGCGAGTTCACAA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_012991 (LOC497825), mRNA.					
Rattus norvegicus	RefSeq	GI_62388884-I	ILMN_302118	YIF1B	NM_001014810.1	NM_001014810.1		292768	62388884	NM_001014810.1	Yif1b	NP_001014810.1	ILMN_1375843	0000870280	S	24	ACCTGGAGTTTCTAGGTGTGCACAGCGCAGGGATGCCACGTCCGGGTAGG	1	+	84373908-84373939:84373940-84373957	1q21	Rattus norvegicus Yip1 interacting factor homolog B (S. cerevisiae) (Yif1b), transcript variant 2, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Yip1b; MGC72987	Yip1b; MGC72987
Rattus norvegicus	RefSeq	GI_62388882-A	ILMN_302118	YIF1B	NM_001014810.1	NM_001014810.1		292768	62388884	NM_001014810.1	Yif1b	NP_001014810.1	ILMN_1376289	0005910364	S	1040	TCCCTCCCAGCCAAGGTGCTCTTGTAGCCAGCTGCACACCCGCAACAATA	1	+	84383741-84383790	1q21	Rattus norvegicus Yip1 interacting factor homolog B (S. cerevisiae) (Yif1b), transcript variant 2, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Yip1b; MGC72987	Yip1b; MGC72987
Rattus norvegicus	RefSeq	GI_34868227-S	ILMN_52465	OLR1102_PREDICTED	XM_235620.3	XM_235620.3		300194	109481262	XM_235620.3	Olr1102_predicted	XP_235620.3	ILMN_1352025	0005910487	S	632	CCACAAGGTGTGTATCAGGCTGGTGTGTTCTTCCTGGGTCTTTGGGATGG	7	-	136926372-136926421	7q36	PREDICTED: Rattus norvegicus olfactory receptor 1102 (predicted) (Olr1102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644364-S	ILMN_264713	RGD1306519_PREDICTED	XM_001075667.1	XM_001075667.1		295437	109467574	XM_001075667.1	RGD1306519_predicted	XP_001075667.1	ILMN_1373968	0004150403	S	1866	TGGAGAAGATGCCACTGTGTTTTATGGAGAGATCCCAAAGAGTTGCAGGG				2q42	PREDICTED: Rattus norvegicus similar to T-cell activation Rho GTPase-activating protein isoform b (predicted) (RGD1306519_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11464986-S	ILMN_274079	PARK2	NM_020093.1	NM_020093.1		56816	11464986	NM_020093.1	Park2	NP_064478.1	ILMN_1373702	0001230735	S	1489	TGGCCGCACGACCTCATGGGAAACACCTCAGACTCCTACCTTTGTTAGCC				1q11	Rattus norvegicus parkin (Park2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IDA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42415] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence IEP]; The process by which a ubiquitin moiety, or multiple moieties, are covalently attached to the target protein, thereby initiating the degradation of that protein [goid 42787] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; The directed movement of dopamine into a cell, typically presynaptic neurons or glial cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 51583] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence TAS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Park; Prkn	Park; Prkn
Rattus norvegicus	RefSeq	GI_34855768-S	ILMN_289522	RGD1310133_PREDICTED	XM_001078499.1	XM_001078499.1		292760	109461595	XM_001078499.1	RGD1310133_predicted	XP_001078499.1	ILMN_1354697	0002260167	S	1478	TGGGGGCTGACGCCTTTTTACCTGCCCTGACCGAGGAGCTGATCTGGAGT				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830482F20 gene (predicted) (RGD1310133_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928861-S	ILMN_278238	NR1H2	NM_031626.1	NM_031626.1		58851	13928861	NM_031626.1	Nr1h2	NP_113814.1	ILMN_1367664	0000520450	S	1628	CAGATGGACGCTTCCTTTGCCTTTCCTGGGGTGGGAGGACACTGTCACAG	1	-	95027444-95027493	1q22	Rattus norvegicus nuclear receptor subfamily 1, group H, member 2 (Nr1h2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence ISS]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IMP]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IPI]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence IDA]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence IPI]	OR-1	OR-1
Rattus norvegicus	RefSeq	GI_34876536-S	ILMN_50930	RGD1564347_PREDICTED	XM_344622.2	XM_344622.2		364764	109505157	XM_344622.2	RGD1564347_predicted	XP_344623.1	ILMN_1373394	0002030369	S	333	GCTGCAGGCTGAGCTGGGCATCGCCCAGGAGCAGATTTCCATAAAGGACA	17	-	72219499-72219515:72232130-72232162	17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (predicted) (RGD1564347_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665272-S	ILMN_63586	LOC292014	XM_226456.2	XM_226456.2		292014	62665272	XM_226456.2	LOC292014	XP_226456.2	ILMN_1366279	0005270047	S	1420	TATATGGGAAGACGCTGACACCAAAGCCTCGCAGCAGGGCGAGATGAGCG				19q12	PREDICTED: Rattus norvegicus similar to Tle2 protein (LOC292014), mRNA.					
Rattus norvegicus	RefSeq	GI_62652867-S	ILMN_68049	RGD1560568_PREDICTED	XM_576322.2	XM_576322.2		500914	109481107	XM_576322.2	RGD1560568_predicted	XP_576322.1	ILMN_1359066	0000110528	S	743	TAAGCCCAAACCCCCTGGACACTGCAGCTCTTTTCAGTTTCGCTCAAGCC	7	-	122599759-122599808	7q34	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (predicted) (RGD1560568_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648717-A	ILMN_302223	SLC7A13	NM_001012100.1	NM_001012100.1		313089	58865769	NM_001012100.1	Slc7a13	NP_001012100.1	ILMN_1376811	0006350324	S	1627	AGTGCCTGGAGAGATGGCTCTGCTTTTAAGGGTACCAGTTGCCCTCCCAG	5	+	34437873-34437922	5q13	Rattus norvegicus solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 (Slc7a13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27668887-S	ILMN_272073	GPR15_PREDICTED	XM_221546.1	XM_221546.1		288181	27668887	XM_221546.1	Gpr15_predicted	XP_221546.1	ILMN_1352981	0000670465	S	926	TCCGCCGGGCCATTGTACGCAGTCTGTGCCCTTGTCTGAAGATCCACAAC	11	+	42710853-42710902	11q12	PREDICTED: Rattus norvegicus G protein-coupled receptor 15 (predicted) (Gpr15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392835-S	ILMN_271423	ACAT1	NM_017075.1	NM_017075.1		25014	8392835	NM_017075.1	Acat1	NP_058771.1	ILMN_1373473	0000460494	S	1520	GGCATGGCTCAGCCGTTAAGAGCACTTGTTGCTACCTGTGTGGTGCATGG	8	-	57044601-57044650	8q24	Rattus norvegicus acetyl-coenzyme A acetyltransferase 1 (Acat1), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA [goid 3985] [evidence IDA]; Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA [goid 3985] [evidence IEA]; Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA [goid 3985] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RATACAL	RATACAL
Rattus norvegicus	RefSeq	GI_62657406-S	ILMN_62160	LOC501737	XM_577138.1	XM_577138.1		501737	62657406	XM_577138.1	LOC501737	XP_577138.1	ILMN_1361371	0006130113	S	44	CAAGGGACATCACGACCGAGCGGAGAGAGCGTGGGCTTTGCAGGCAGATA					PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (LOC501737), mRNA.					
Rattus norvegicus	RefSeq	GI_47576444-S	ILMN_278158	OLR1590	NM_001000995.1	NM_001000995.1		405355	47576444	NM_001000995.1	Olr1590	NP_001000995.1	ILMN_1368475	0001170575	S	354	GGCCATTGACAGGTACGTTGCCATCTGTAACCCTCTCCGCTACGCAATCA	13	+	89853472-89853521	13q24	Rattus norvegicus olfactory receptor 1590 (Olr1590), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1590	Olr1590
Rattus norvegicus	RefSeq	GI_62650694-S	ILMN_49604	SRP54	XM_343063.2	XM_343063.2		116650	62650694	XM_343063.2	Srp54	XP_343064.2	ILMN_1371927	0007050528	S	2168	GATGTGGTCAGCGTACCACCCAGAAAATAGACAAAAAGCCAGCAGGTACA				6q23	PREDICTED: Rattus norvegicus signal recognition particle 54 kDa (Srp54), mRNA.					
Rattus norvegicus	RefSeq	GI_62653254	ILMN_289347	TAF1D	NM_001014207.1	NM_001014207.1		363017	62079148	NM_001014207.1	Taf1d	NP_001014229.1	ILMN_1650950	0001450433	S	795	CTAAAAAGAGCAAAGCCAAGGATGCCACACAGAGAGGGAACAGGAGGTCC	8	+	12112562-12112611	8q12	Rattus norvegicus TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa (Taf1d), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1309627	RGD1309627
Rattus norvegicus	RefSeq	GI_62640690-S	ILMN_49754	LRRK1_PREDICTED	XM_218760.4	XM_218760.4		308703	109458877	XM_218760.4	Lrrk1_predicted	XP_218760.3	ILMN_1352477	0004610563	S	7393	GCAAATTTAGGTGTTTGCAACTGGGGAAGTGCAAGCTGGTGAGACTCGTG	1	-	120694900-120694949	1q22	PREDICTED: Rattus norvegicus leucine-rich repeat kinase 1 (predicted) (Lrrk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641283-S	ILMN_274859	RGD1310609_PREDICTED	XM_001077352.1	XM_001077352.1		293488	109462849	XM_001077352.1	RGD1310609_predicted	XP_001077352.1	ILMN_1355554	0007040161	S	1087	CTTGAATCTGCCCCAGCCAACCTCATGGGAGAAGGCAACAAAGGAGTTCC				1q36	PREDICTED: Rattus norvegicus similar to hypothetical protein BC011981 (predicted) (RGD1310609_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660748-S	ILMN_282216	EWSR1	XM_001065285.1	XM_001065285.1		289752	109499958	XM_001065285.1	Ewsr1	XP_001065285.1	ILMN_1366120	0003450717	S	1972	ATAAAGGCGAGCACCGTCAGGAACGCAGAGACCGGCCCTACTAGAGACCT	14	-	85730643-85730649:85730650-85730689:85730814-85730816	14q21	PREDICTED: Rattus norvegicus Ewing sarcoma breakpoint region 1 (Ewsr1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664722-S	ILMN_57619	RGD1559726_PREDICTED	XM_225656.3	XM_225656.3		307203	109506865	XM_225656.3	RGD1559726_predicted	XP_225656.1	ILMN_1349210	0003610465	S	816	TAATTGTGCCAGTGAGCAGGTGCTGTGGCGTATACTGAACAACGTGGGAC	18	+	83699180-83699229	18q13	PREDICTED: Rattus norvegicus similar to melanoma antigen family A, 6 (predicted) (RGD1559726_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655480-S	ILMN_49529	NUDT12_PREDICTED	XM_346080.2	XM_346080.2		367323	62655480	XM_346080.2	Nudt12_predicted	XP_346081.2	ILMN_1363048	0004150039	S	611	CCCGAGAGTTGGGGAGACAATAGAAGACGCTGTGCGGAGAGAGGTAGGAG				9q36	PREDICTED: Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 12 (predicted) (Nudt12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657071-S	ILMN_63842	RGD1564542_PREDICTED	XM_573197.2	XM_573197.2		498001	109489037	XM_573197.2	RGD1564542_predicted	XP_573197.1	ILMN_1368273	0000430242	S	870	GTTCTCTTACGCAATCCTGACTCACAGCGTGGGAGCAAACACCCCTGGGC	10	+	90316860-90316909	10q32.1	PREDICTED: Rattus norvegicus similar to Serine/threonine-protein kinase WNK4 (Protein kinase, lysine-deficient 4) (predicted) (RGD1564542_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645232-S	ILMN_48616	LOC499808	XM_580018.1	XM_580018.1		499808	62645232	XM_580018.1	LOC499808	XP_580018.1	ILMN_1366556	0005890706	S	944	TACCTATCCCGAACCACAGAACAAATACCGGCAGACAAAATGGCTCACCC					PREDICTED: Rattus norvegicus LOC499808 (LOC499808), mRNA.					
Rattus norvegicus	RefSeq	GI_62659558-S	ILMN_56513	RGD1304982_PREDICTED	XM_213907.4	XM_213907.4		289138	109498058	XM_213907.4	RGD1304982_predicted	XP_213907.4	ILMN_1361374	0000540372	S	1246	GGTACTGTGAGTTCCTTGAGAAGTAGGTACTGTGTCTGGATCACCTGCTG	13	+	72755965-72756014	13q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810025M15 (predicted) (RGD1304982_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646396-S	ILMN_274988	LOC686701	XM_001075310.1	XM_001075310.1		686701	109522539	XM_001075310.1	LOC686701	XP_001075310.1	ILMN_1352650	0002320075	S	2399	CTGGCCTGGGCATCTCAGAGGAGGAACGTGTGCAGATTGTCACTGCCTTG					PREDICTED: Rattus norvegicus similar to Protein KIAA1404 (LOC686701), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644842-S	ILMN_283027	GLE1	NM_001025731.1	NM_001025731.1		362098	71043659	NM_001025731.1	Gle1	NP_001020902.1	ILMN_1348859	0006040114	S	2169	GTTGTGTGGCAGAAGGGGCAACAATAAAGCAACTGAGACAGCGGGTTTGG	3	+	8948644-8948693	3p12	Rattus norvegicus GLE1 RNA export mediator homolog (yeast) (Gle1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm [goid 16973] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]		MGC116182	MGC116182
Rattus norvegicus	RefSeq	GI_62646783-S	ILMN_58296	LOC362317	XM_342634.3	XM_342634.3		362317	109471691	XM_342634.3	LOC362317	XP_342635.2	ILMN_1359410	0002360273	S	2338	GCCTTAAGTACTGTTGCTTTACGTGGCAGCTGGGAGATGCTGGTACTTGT	4	-	27018429-27018478	4q13	PREDICTED: Rattus norvegicus similar to Krev interaction trapped protein 1 (Krev interaction trapped 1) (Cerebral cavernous malformations 1 protein homolog) (LOC362317), mRNA.					
Rattus norvegicus	RefSeq	GI_62661666-S	ILMN_54937	RGD1563220_PREDICTED	XM_573811.2	XM_573811.2		498540	109501836	XM_573811.2	RGD1563220_predicted	XP_573811.1	ILMN_1364846	0004050706	S	422	CAACTAAGAGGGTGCCTGTCCTCCAAGCAGGAGTCAATACAGTCACCACT	15	-	47538743-47538792	15p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1563220_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645666-S	ILMN_69851	TRP53BP1_PREDICTED	XM_215812.4	XM_215812.4		296099	109468620	XM_215812.4	Trp53bp1_predicted	XP_215812.4	ILMN_1352910	0005570181	S	5853	GGTATTTGATGTGGTGGTGACAGACCCCTCATGCCCAGCCTCGGTGCTCA	3	-	107999754-107999803	3q35	PREDICTED: Rattus norvegicus transformation related protein 53 binding protein 1 (predicted) (Trp53bp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651629-S	ILMN_51354	LOC362809	XM_343135.2	XM_343135.2		362809	62651629	XM_343135.2	LOC362809	XP_343136.2	ILMN_1367441	0002260400	S	1897	AGTGCGACTGTAATGGGAGGCTGTGGGTGCACTTTGCAGGCAGCTGGACA					PREDICTED: Rattus norvegicus similar to Sid3177p (LOC362809), mRNA.					
Rattus norvegicus	RefSeq	GI_62662714-S	ILMN_274962	SGCZ_PREDICTED	XM_001066057.1	XM_001066057.1		364605	109504279	XM_001066057.1	Sgcz_predicted	XP_001066057.1	ILMN_1372270	0002690025	S	1239	CCCAGACGAAGGTCCCAAATCCACTGGCGACATGAAAACGCTTAACCCCG				16q12.1	PREDICTED: Rattus norvegicus sarcoglycan zeta (predicted) (Sgcz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648832-S	ILMN_267381	DCTN3_PREDICTED	XM_001060589.1	XM_001060589.1		362504	109476294	XM_001060589.1	Dctn3_predicted	XP_001060589.1	ILMN_1351591	0006020037	S	621	GCAGGCTCCAGGGCCTTCCACCAACCTGTCTTTATAAGGCAGAGACAGCT				5q22	PREDICTED: Rattus norvegicus dynactin 3 (predicted) (Dctn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27666993-S	ILMN_281690	RGD1560824_PREDICTED	XR_007343.1	XR_007343.1		299178	109479595	XR_007343.1	RGD1560824_predicted		ILMN_1374207	0003060706	S	213	ATGGAGTACACCCACTATGGCTGCTTCCGTGGCATAGGCAGCTCAGGCAC				6q24	PREDICTED: Rattus norvegicus similar to Phospholipase A2 precursor (Phosphatidylcholine 2-acylhydrolase) (predicted) (RGD1560824_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394407-S	ILMN_278658	TACR3	NM_017053.1	NM_017053.1		24808	8394407	NM_017053.1	Tacr3	NP_058749.1	ILMN_1359508	0005550133	S	1494	CCAATGGCTGTTCCCACAGAGGTTCCAAATCTGCCTCCACCACATCAAGT	2	+	232404299-232404348	2q43	Rattus norvegicus tachykinin receptor 3 (Tacr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with tachykinin to initiate a change in cell activity [goid 4995] [evidence IEA]	Nmkr; Tac3r; Nkr	Nmkr; Tac3r; Nkr
Rattus norvegicus	RefSeq	GI_62661360-S	ILMN_302201	LOC501979	XM_577408.1	XM_577408.1		501979	62661360	XM_577408.1	LOC501979	XP_577408.1	ILMN_1363871	0006220170	S	19	CCAGTCACAGACGAGGACACCTTGACTGGTTTCCTGTTGGGCAGCATTGG	15	+	27083744-27083793	15p14	PREDICTED: Rattus norvegicus similar to ATPase, H+ transporting, V1 subunit F (LOC501979), mRNA.	A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981469-S	ILMN_276680	REG1A	NM_012641.1	NM_012641.1		24714	6981469	NM_012641.1	Reg1a	NP_036773.1	ILMN_1354666	0005420113	S	414	GGAGCAGTGGGTCTCTGTTTCTCTACAAATCCTGGGACACTGGGTATCCT	4	+	112388666-112388715	4q34	Rattus norvegicus regenerating islet-derived 1 alpha (Reg1a), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Rgp1; LITHOST; RATLITHOST; Reg; RGPI; RATRGPI	Rgp1; LITHOST; RATLITHOST; Reg; RGPI; RATRGPI
Rattus norvegicus	RefSeq	GI_62649512-S	ILMN_55543	LOC313535	XM_233435.3	XM_233435.3		313535	62649512	XM_233435.3	LOC313535	XP_233435.3	ILMN_1364606	0001400095	S	5871	GGCCGCACAGTAATGAAATGGAGACATCAAGGCGGGTGGCGGGAAGACAG				5q36	PREDICTED: Rattus norvegicus similar to prion protein interacting protein 1 (LOC313535), mRNA.					
Rattus norvegicus	RefSeq	GI_62650404-I	ILMN_57942	SNX17_PREDICTED	XM_575995.1	XM_575995.1		298836	62650404	XM_575995.1	Snx17_predicted	XP_575995.1	ILMN_1375915	0000380398	S	1244	CCTTTGGTTCCCTCTCACTGCCCCCGTCACAACAAGGGGTAAGGCCTAAA				6q14	PREDICTED: Rattus norvegicus sorting nexin 17 (predicted) (Snx17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652731-S	ILMN_61175	LOC685444	XM_216985.4	XM_216985.4		685444	109481003	XM_216985.4	LOC685444	XP_216985.3	ILMN_1362988	0004850082	S	270	GAAGTCTGCCTCCAGTAAGCCCAGCAGCAGTAAGTCCAAAGGCAAGCAGG	7	+	117465539-117465553:117468662-117468696	7q34	PREDICTED: Rattus norvegicus hypothetical protein LOC685444 (LOC685444), mRNA.					
Rattus norvegicus	RefSeq	GI_62650792-S	ILMN_54719	LOC299123	XM_216730.3	XM_216730.3		299123	62650792	XM_216730.3	LOC299123	XP_216730.3	ILMN_1369526	0001170750	S	3862	CTGACATGGCCTCAGGGGGCCCAGCAGATCCACTTTTCATTACACACGTG				6q24	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0586 (predicted) (LOC299123), mRNA.					
Rattus norvegicus	RefSeq	GI_62645106-S	ILMN_266745	NMI	NM_001034148.1	NM_001034148.1		311021	77627730	NM_001034148.1	Nmi	NP_001029320.1	ILMN_1368184	0004730068	S	573	GGCGGCGGAGAAGTGGAAAGTGTAGACTATGACAGGAAGTCCAGAAGCGC	3	-	32979284-32979333	3q12	Rattus norvegicus N-myc (and STAT) interactor (Nmi), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112791	MGC112791
Rattus norvegicus	RefSeq	GI_62663253-S	ILMN_48820	LOC364671	XM_344566.2	XM_344566.2		364671	62663253	XM_344566.2	LOC364671	XP_344567.2	ILMN_1372976	0003610372	S	153	GGCAGAGGCCCTGGTACGGAAGCTAAAAGCTGTAACTCGTATGCAGAGGC				17p14	PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (LOC364671), mRNA.					
Rattus norvegicus	RefSeq	GI_62655532	ILMN_287933	TGIF1	NM_001015020.1	NM_001015020.1		316742	62543526	NM_001015020.1	Tgif1	NP_001015020.1	ILMN_1651152	0003170128	S	773	ATCCTCAGAGTGGTCTTTTCAACACTCCTCCCCCGACTCCGCCAGACCTC	9	-	110043730-110043779	9q38	Rattus norvegicus TGFB-induced factor homeobox 1 (Tgif1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of retinoic acid receptor signaling pathway activity [goid 48387] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC109104; Tfig; MGC156525	MGC109104; Tfig; MGC156525
Rattus norvegicus	RefSeq	GI_62079272-S	ILMN_285170	TMEM171	NM_001013903.1	NM_001013903.1		293634	62079272	NM_001013903.1	Tmem171	NP_001013925.1	ILMN_1372871	0000430037	S	810	CTCTCCTGGGGCTAACAGCCTGCACCGGATCGAAAACCCACCTTCCTACT	2	-	29303799-29303848	2q12	Rattus norvegicus transmembrane protein 171 (Tmem171), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	Rn.9353	ILMN_267677	REEP6	NM_001013218.1	NM_001013218.1		362835	61557325	NM_001013218.1	Reep6	NP_001013236.1	ILMN_1530372	0001400603	S	194	TACTTTGCAATGTCATCGGATTTGTATACCCCGCATATGCTTCAGTCAAA	7	-	10888411-10888418:10888510-10888551	7q11	Rattus norvegicus receptor accessory protein 6 (Reep6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Dp1l1	Dp1l1
Rattus norvegicus	RefSeq	GI_61557325-S	ILMN_267677	REEP6	NM_001013218.1	NM_001013218.1		362835	61557325	NM_001013218.1	Reep6	NP_001013236.1	ILMN_1371225	0001410050	S	1927	ATGCCACATGAAACACCCACCAGCCAGGCCATCACACGTCAAACCTGCCC	7	-	10885415-10885464	7q11	Rattus norvegicus receptor accessory protein 6 (Reep6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Dp1l1	Dp1l1
Rattus norvegicus	RefSeq	GI_62644170-S	ILMN_62754	RGD1563391_PREDICTED	XM_575012.2	XM_575012.2		499688	109465363	XM_575012.2	RGD1563391_predicted	XP_575012.2	ILMN_1362136	0004050286	S	291	GGACATTTTGGAGAAACAGGTCATGGACACCCGCATTCAGATGGGCACAC	2	-	203507476-203507525	2q34	PREDICTED: Rattus norvegicus similar to Gstm6 protein (predicted) (RGD1563391_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981199-S	ILMN_300992	MFGE8	NM_012811.1	NM_012811.1		25277	6981199	NM_012811.1	Mfge8	NP_036943.1	ILMN_1363839	0003170692	S	1819	CTGGAGCCTCGGTTGACAAGAGGACTGTCGGGTCTGGAGAGATAGATGGG	1	-	134870123-134870172	1q31	Rattus norvegicus milk fat globule-EGF factor 8 protein (Mfge8), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]	The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence ISS]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]	Interacting selectively with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine [goid 1786] [evidence ISS]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine [goid 8429] [evidence ISS]	OAcGD3S; MFGMP-E8; MFGME8	OAcGD3S; MFGMP-E8; MFGME8
Rattus norvegicus	RefSeq	GI_62665736-S	ILMN_290777	BRPF3_PREDICTED	XM_001078549.1	XM_001078549.1		309647	109509852	XM_001078549.1	Brpf3_predicted	XP_001078549.1	ILMN_1361273	0004480463	S	3446	CCCTGGGTGTAGAGGACACTGTAGACAAGCTCAAGATGCTCGAAGGCCGC				20p12	PREDICTED: Rattus norvegicus bromodomain and PHD finger containing, 3 (predicted) (Brpf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660742-A	ILMN_276987	THOC5	NM_001012153.1	NM_001012153.1		360972	58865877	NM_001012153.1	Thoc5	NP_001012153.1	ILMN_1376329	0004590215	S	1811	TCGGGCTATGGAGAGTGAAGTCAATGTGTGCTATCGGGAGCTCTGCGGCC	14	+	85587190-85587193:85588312-85588357	14q21	Rattus norvegicus THO complex 5 (Thoc5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of macrophage differentiation [goid 45650] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_28933456-S	ILMN_272235	GSTM2	NM_177426.1	NM_177426.1		24424	28933456	NM_177426.1	Gstm2	NP_803175.1	ILMN_1350896	0002070605	S	320	CCCGCCTACAGTTGGCCATGGTCTGCTACAGCCCTGACTTTGAGAGAAAG	2	-	203551173-203551182:203552049-203552088	2q34	Rattus norvegicus glutathione S-transferase, mu 2 (Gstm2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence TAS]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	GSTA4	GSTA4
Rattus norvegicus	RefSeq	GI_27465558-S	ILMN_267255	FAM5B	NM_173115.1	NM_173115.1		286895	27465558	NM_173115.1	Fam5b	NP_775138.1	ILMN_1351220	0000130707	S	3786	AGTGTGTGCAGTGCTAAAGCAGAGGAGCTCACGCTAAGGGCAGGTCACGG	13	-	73542289-73542338	13q22	Rattus norvegicus family with sequence similarity 5, member B (Fam5b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IMP]			
Rattus norvegicus	RefSeq	GI_47577250-S	ILMN_264111	OLR390	NM_001000558.1	NM_001000558.1		365885	47577250	NM_001000558.1	Olr390	NP_001000558.1	ILMN_1370223	0005130132	S	795	CAGGGAAGGCTACTCCCTGGACATGGACATATTGGTGTCTGTGCTCTTCT	2	-	192189012-192189061	2q34	Rattus norvegicus olfactory receptor 390 (Olr390), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr390	Olr390
Rattus norvegicus	RefSeq	GI_62645609-S	ILMN_67231	DLL4_PREDICTED	XM_230472.4	XM_230472.4		311332	109468667	XM_230472.4	Dll4_predicted	XP_230472.4	ILMN_1374148	0001240095	S	2400	TTGCCACAGAGGTATAAGGCAGGAGCCTACTCAGACACCCAGCTTCGGCC	3	+	105853194-105853204:105853697-105853702:105853703-105853735	3q35	PREDICTED: Rattus norvegicus delta-like 4 (Drosophila) (predicted) (Dll4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651622-S	ILMN_50992	LOC363416	XM_343740.2	XM_343740.2		363416	62651622	XM_343740.2	LOC363416	XP_343741.2	ILMN_1352641	0005420707	S	488	TCTCTGTAGGGGAGCTGTGCCCATCAAAGGGAGAAGCCGGTATGTGAGGC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC363416), mRNA.					
Rattus norvegicus	RefSeq	GI_34853782-S	ILMN_55069	LOC361480	XM_346977.1	XM_346977.1		361480	34853782	XM_346977.1	LOC361480	XP_346978.1	ILMN_1348966	0005720427	S	379	AATCTCAGCAAGGCCAGAGCAGGCTGGGTTTCCAAGGACAGTCGGTCGTC					PREDICTED: Rattus norvegicus hypothetical LOC361480 (LOC361480), mRNA.					
Rattus norvegicus	RefSeq	GI_47576212-S	ILMN_263957	OLR1334	NM_001000478.1	NM_001000478.1		300634	47576212	NM_001000478.1	Olr1334	NP_001000478.1	ILMN_1364392	0003440301	S	45	CCCCCACGCACCAGCCCTGGACACCATGCTTTTTGTAACCTTCTTGATGA	8	-	42940427-42940476	8q22	Rattus norvegicus olfactory receptor 1334 (Olr1334), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1334	Olr1334
Rattus norvegicus	RefSeq	GI_62658489-S	ILMN_266818	ZFP95_PREDICTED	XM_001070925.1	XM_001070925.1		304275	109496579	XM_001070925.1	Zfp95_predicted	XP_001070925.1	ILMN_1361411	0000670168	S	3137	GAGCTGTAGCCTCCTCAAACATCTGCGAAGCCACGAGAGGACAGACCCCT				12p11	PREDICTED: Rattus norvegicus zinc finger protein 95 (predicted) (Zfp95_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164082-S	ILMN_302955	V1RC35	NM_001009508.1	NM_001009508.1		494227	57164082	NM_001009508.1	V1rc35	NP_001009508.1	ILMN_1370357	0004200168	S	699	CCTGCTGTGGATGTATGACCCTGTCGTCCTCAGTGTTCAGAAGTTTGTGG	4	-	86664807-86664856	4q24	Rattus norvegicus vomeronasal 1 receptor, C35 (V1rc35), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54262171-S	ILMN_288146	GMFB	NM_031032.2	NM_031032.2		81661	54262171	NM_031032.2	Gmfb	NP_112294.1	ILMN_1349533	0002640288	S	1210	AGAGCGGAGCTTGGTAACAGAAAGCACCTCCTAACGTCTCGTGAGCACTG	15	-	22664866-22664915	15p14	Rattus norvegicus glia maturation factor, beta (Gmfb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	MGC93372	MGC93372
Rattus norvegicus	RefSeq	GI_21955254-S	ILMN_281673	NR1D1	NM_145775.1	NM_145775.1		252917	21955254	NM_145775.1	Nr1d1	NP_665718.1	ILMN_1363753	0000580022	S	1762	CTCAACTCTCTGGCGCTTACTGAGGAGGAGCTGGGCCTTTTCACGGCAGT	10	-	87542362-87542411	10q31	Rattus norvegicus nuclear receptor subfamily 1, group D, member 1 (Nr1d1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	REV-ERBAALPHA	REV-ERBAALPHA
Rattus norvegicus	RefSeq	GI_62660441-S	ILMN_276648	NSUN7	NM_001017452.1	NM_001017452.1		305339	62945259	NM_001017452.1	Nsun7	NP_001017452.1	ILMN_1350675	0006100167	S	1180	GGACGACGATATCCTAATGGTCAACACAGGCTCATGGTACACAGTTGCCC	14	-	44556429-44556478	14p11	Rattus norvegicus NOL1/NOP2/Sun domain family, member 7 (Nsun7), mRNA.					
Rattus norvegicus	Unigene	Rn.4262	ILMN_160982	LOC497991	Rn.4262		Rn.4262		62656934	XM_573188	LOC497991		ILMN_1530447	0001240402	S	5507	TTTTAATCCTTGATGTTTGTTTTTATGCAATGTTTGTTCCTAAATCTATG					PREDICTED: Rattus norvegicus similar to peroxisome proliferator-activated receptor binding protein (LOC497991),					
Rattus norvegicus	RefSeq	GI_62645496-S	ILMN_61869	LOC499850	XM_575189.1	XM_575189.1		499850	62645496	XM_575189.1	LOC499850	XP_575189.1	ILMN_1363520	0004760086	S	1303	CCTGCCCGAACCGGATTCCATTAAGCACAGAGCCTAGAGTTTCTCCCTGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610012H03 (LOC499850), mRNA.					
Rattus norvegicus	RefSeq	GI_34858483-S	ILMN_291985	TSPAN11	NM_001024262.1	NM_001024262.1		312727	66730383	NM_001024262.1	Tspan11	NP_001019433.1	ILMN_1363305	0002470575	S	618	GCCGACTGGCAGCACAGCGTATACATCTTGTCTCAGGAAGCCATCGGTCG	4	+	164397403-164397452	4q42	Rattus norvegicus tetraspanin 11 (Tspan11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109445	MGC109445
Rattus norvegicus	RefSeq	GI_51948387-S	ILMN_295558	CACYBP	NM_001004208.1	NM_001004208.1		289144	51948387	NM_001004208.1	Cacybp	NP_001004208.1	ILMN_1367376	0006650121	S	854	CCTGTGGGAACCGTCATGTGGAGTGCTCGTGTTTCCAGTAGGGACTGTTG	13	-	75623780-75623829	13q22	Rattus norvegicus calcyclin binding protein (Cacybp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence ISS]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93921	MGC93921
Rattus norvegicus	RefSeq	GI_62662506-S	ILMN_282867	RGD1305222_PREDICTED	XM_001073162.1	XM_001073162.1		290686	109504059	XM_001073162.1	RGD1305222_predicted	XP_001073162.1	ILMN_1361446	0002690451	S	1215	GCTGAGATGGCTCAGCAAGAGGGGGCTTGCAGCCAAGCCTGATTGTCAAA				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810029B16 (predicted) (RGD1305222_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27662297-S	ILMN_51177	PMS2_PREDICTED	XM_213712.4	XM_213712.4		288479	109495144	XM_213712.4	Pms2_predicted	XP_213712.4	ILMN_2040825	0005570600	S	2497	ATGGGTGAGATGGACCACCCCTGGAACTGCCCCCACGGAAGGCCGACCAT	12	-	11004820-11004869	12p11	PREDICTED: Rattus norvegicus postmeiotic segregation increased 2 (S. cerevisiae) (predicted) (Pms2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658458-S	ILMN_51177	PMS2_PREDICTED	XM_213712.4	XM_213712.4		288479	109495144	XM_213712.4	Pms2_predicted	XP_213712.4	ILMN_1360916	0004570593	S	2754	TGGGAGAGCCACCCCAGGAGTTTGAGACTATCCTGAGCTACATTGGTGAG	12	-	11004563-11004612	12p11	PREDICTED: Rattus norvegicus postmeiotic segregation increased 2 (S. cerevisiae) (predicted) (Pms2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642925-S	ILMN_68275	DHX29_PREDICTED	XM_215481.3	XM_215481.3		294741	62642925	XM_215481.3	Dhx29_predicted	XP_215481.3	ILMN_1368639	0005050164	S	4296	CATTGCCTGAAGTGTTGGTACTAGCCATTAGCCTGAAGACGGGGGTGGGG					PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 29 (predicted) (Dhx29_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648088	ILMN_51630	RGD1562038_PREDICTED	XM_232320.4	XM_232320.4		312668	109472505	XM_232320.4	RGD1562038_predicted	XP_232320.4	ILMN_1650655	0004050270	S	3217	GTGACAGACCGTACCTGTGACTGCAGCGCCTACTCTCCCATCCTCCAGGA	4	+	155657277-155657326	4q42	PREDICTED: Rattus norvegicus similar to putative voltage-gated calcium channel alpha(2)delta-4 subunit (predicted) (RGD1562038_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34860598-S	ILMN_275884	LOC500959	XM_001053991.1	XM_001053991.1		500959	109484411	XM_001053991.1	LOC500959	XP_001053991.1	ILMN_1361472	0006040373	S	260	AGACTTAGGAGCTACCTGGGTGGTGCTGGGACACTCGGAAAGAAGACACG				8q13	PREDICTED: Rattus norvegicus triosephosphate isomerase (LOC500959), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate [goid 4807] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653368-S	ILMN_275884	LOC500959	XM_001053991.1	XM_001053991.1		500959	109484411	XM_001053991.1	LOC500959	XP_001053991.1	ILMN_1355142	0000540041	S	1249	CTCCCCCGCAGTGCCAAAGCCCTTGTATTGTGTTTGTGAACCATCCTACG				8q13	PREDICTED: Rattus norvegicus triosephosphate isomerase (LOC500959), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate [goid 4807] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11067434-S	ILMN_296267	F13A1	NM_021698.1	NM_021698.1		60327	11067434	NM_021698.1	F13a1	NP_067730.1	ILMN_1352360	0000540070	S	2559	GCCCATGAGCAGGGGGGATGTGCCCAATACCTGGCCTCAATTAAGAATTC	17	+	34269625-34269674	17p12	Rattus norvegicus coagulation factor XIII, A1 subunit (F13a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence IEA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]	Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IEA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	F13a	F13a
Rattus norvegicus	RefSeq	GI_62639173-S	ILMN_280204	RGD1304717_PREDICTED	XM_001077356.1	XM_001077356.1		308436	109461484	XM_001077356.1	RGD1304717_predicted	XP_001077356.1	ILMN_1357961	0005670739	S	277	CGCCAAAAGCACCACAGGAAGTCACAAAGGCCCTCCAGAACCTGCCAGCA				1q21	PREDICTED: Rattus norvegicus similar to CDNA sequence BC024561 (predicted) (RGD1304717_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647664-S	ILMN_54270	LOC500224	XM_575575.1	XM_575575.1		500224	62647664	XM_575575.1	LOC500224	XP_575575.1	ILMN_1362782	0005550095	S	571	TACAGGTGGACGATTGAAAGAAAAGCTGCTGCCTGCCCTGGATTCTTGGG				4q34	PREDICTED: Rattus norvegicus similar to ladybird-like homeodomain protein LBX2 (LOC500224), mRNA.					
Rattus norvegicus	RefSeq	GI_34857079-S	ILMN_279251	SLITRK3_PREDICTED	XM_001068121.1	XM_001068121.1		310519	109466830	XM_001068121.1	Slitrk3_predicted	XP_001068121.1	ILMN_1356155	0001570021	S	3195	CAGTCTGCTACTAGAACGTGAGAGGCCACAGCCTGCTCCATGCACAGTGG				2q32	PREDICTED: Rattus norvegicus SLIT and NTRK-like family, member 3 (predicted) (Slitrk3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642172-S	ILMN_52181	CSTF2T_PREDICTED	XM_219809.4	XM_219809.4		309338	109460004	XM_219809.4	Cstf2t_predicted	XP_219809.4	ILMN_1362762	0006400672	S	1653	CCCATTAATATGGGGGCAGGTGGCCCTCAGGGACCTCGACAGGTTCCAAA	1	+	235062022-235062071	1q52	PREDICTED: Rattus norvegicus cleavage stimulation factor, 3' pre-RNA subunit 2, tau (predicted) (Cstf2t_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639864-S	ILMN_67828	LOC502329	XM_577794.1	XM_577794.1		502329	62639864	XM_577794.1	LOC502329	XP_577794.1	ILMN_1350491	0006220152	S	3985	GTGATCTCAGGGTCACTGTTCATAAAGGGGAGGAGCAGGCGGCTGAGCAG					PREDICTED: Rattus norvegicus similar to LRRGT00108 (LOC502329), mRNA.					
Rattus norvegicus	RefSeq	GI_62646376-S	ILMN_276826	SLC35C2	XM_001071455.1	XM_001071455.1		311637	109471331	XM_001071455.1	Slc35c2	XP_001071455.1	ILMN_1373517	0005360400	S	1730	TCTCAGGTTCAGACTGTGGGACATCTGGGAAGGAGTCATGGAGAGGCTGG				3q42	PREDICTED: Rattus norvegicus solute carrier family 35, member C2 (Slc35c2), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660573-S	ILMN_271461	APEX2_MAPPED	XM_001059968.1	XM_001059968.1		289662	109500733	XM_001059968.1	Apex2_mapped	XP_001059968.1	ILMN_1349158	0004060398	S	1246	GTGGGCACTCTCGTAACTCCAACAACTCTGGAAGGGGATGTGATAGCCAC				14q21	PREDICTED: Rattus norvegicus apurinic/apyrimidinic endonuclease 2 (mapped) (Apex2_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62663184-S	ILMN_273842	TRPC7	XM_001067646.1	XM_001067646.1		282822	109505434	XM_001067646.1	Trpc7	XP_001067646.1	ILMN_1356380	0002900092	S	2561	CTGAAAACCTGACAGCTAACAGCACCTTCAGCAAGCCCACCAGATACCAG				17p14	PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily C, member 7 (Trpc7), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of manganese (Mn) ions into, out of, within or between cells [goid 6828] [evidence ISS]	Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence TAS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_18640729-S	ILMN_296901	ADCY3	NM_130779.1	NM_130779.1		64508	18640729	NM_130779.1	Adcy3	NP_570135.1	ILMN_1370411	0001740372	S	4260	AGGTTCTTCTGGAACCCCCGTGTCACCTTAGTCACGAGAGCGAAAAGTGC	6	+	27201999-27202048	6q14	Rattus norvegicus adenylate cyclase 3 (Adcy3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IDA]; Progression through the nuclear division phase of a meiotic cell cycle in the female germline [goid 7143] [evidence IEP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IDA]	Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin [goid 8294] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_22208847-S	ILMN_302878	RUVBL1	NM_147177.1	NM_147177.1		65137	22208847	NM_147177.1	Ruvbl1	NP_671706.1	ILMN_1365112	0007050239	S	1420	ACCCAGAGGACAGACCCCACACCGAGGACAGGGTCTTGCGTTGAGCATGC	4	+	122591608-122591657	4q34	Rattus norvegicus RuvB-like protein 1 (Ruvbl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence ISS]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix [goid 3678] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix [goid 3678] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	Pontin52; NMP238; Tip49a	Pontin52; NMP238; Tip49a
Rattus norvegicus	Unigene	Rn.836	ILMN_160674	RN.836	Rn.836		Rn.836		49490730	CO382628			ILMN_1530317	0002690040	S	213	CTATTTACTAAGACCTTATCACAAAAACAAAAACCAGGCTATCCTTTAAA					AGENCOURT_26626394 NIH_MGC_253 Rattus norvegicus cDNA clone IMAGE:7301820 5', mRNA					
Rattus norvegicus	RefSeq	GI_62717970	ILMN_58475	LOC298820	XM_233901.2	XM_233901.2		298820	62717970	XM_233901.2	LOC298820	XP_233901.2	ILMN_1649983	0006200458	S	1572	GTGCAAATTCGAGGACAGCCCCTCTCGAGCTTTGGTCTACAGCCAAGAAG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC298820), mRNA.					
Rattus norvegicus	RefSeq	GI_56799395-S	ILMN_284882	MYO1D	NM_012983.2	NM_012983.2		25485	56799395	NM_012983.2	Myo1d	NP_037115.2	ILMN_1348906	0000130397	S	4914	ACCAAAGCAGTTATGCCAAAAGAGTCGCGGGTCAGAAGGGATGGCTCCCC	10	-	68721043-68721092	10q26	Rattus norvegicus myosin ID (Myo1d), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; A myosin complex containing a class I myosin heavy chain and associated light chains; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments; myosin I complexes are involved in diverse processes related to membrane traffic and cell movement [goid 45160] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Myr4; Myo1c; MGC93573; Myr2	Myr4; Myo1c; MGC93573; Myr2
Rattus norvegicus	RefSeq	GI_34932131-S	ILMN_65539	RGD1305184_PREDICTED	XM_225905.3	XM_225905.3		307412	109506669	XM_225905.3	RGD1305184_predicted	XP_225905.3	ILMN_1369865	0004010239	S	893	CTGCACTGGGCATCCTCAGGGATAATGATGTGGAGAAGCTAAGGCAGAAG	18	+	56343168-56343217	18q12.1	PREDICTED: Rattus norvegicus similar to CDNA sequence BC023105 (predicted) (RGD1305184_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50657415-S	ILMN_275022	C1RL	NM_001002804.1	NM_001002804.1		408246	50657415	NM_001002804.1	C1rl	NP_001002804.1	ILMN_1354671	0005130162	S	1161	TATGTTCTGTGTCGGGGAAGAGATGCAGGTCAACAGTGTCTGCCAGGGAG	4	+	160708389-160708438	4q42	Rattus norvegicus complement component 1, r subcomponent-like (C1rl), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643785	ILMN_286478	EFNA3	XM_001072657.1	XM_001072657.1		170901	109466910	XM_001072657.1	Efna3	XP_001072657.1	ILMN_1650503	0006370075	S	1591	CGCACAGACACTTTTGGAGACCGTAACAACAACGCCCCCTCCCTTCCAGC				2q34	PREDICTED: Rattus norvegicus ephrin A3, transcript variant 2 (Efna3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IDA]; The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin [goid 48013] [evidence TAS]	Interacting selectively with an ephrin receptor [goid 46875] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62660327-S	ILMN_281109	EPHA5	XM_001075222.1	XM_001075222.1		79208	109500518	XM_001075222.1	Epha5	XP_001075222.1	ILMN_1352043	0000450088	S	2980	CAGTTCAATGGACGCTGTGGCTCAGGTGACCTTGGAGGATTTGAGACGCC				14p21	PREDICTED: Rattus norvegicus EphA5 (Epha5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645537-S	ILMN_286951	RGD1564529_PREDICTED	XM_001080485.1	XM_001080485.1		366153	109470536	XM_001080485.1	RGD1564529_predicted	XP_001080485.1	ILMN_1350399	0004060286	S	3285	GGGAAGCAAGCTCTAGTTGGGAGTCCAGCTCCTGTTGTAGAGAGACCAGG				3q34	PREDICTED: Rattus norvegicus similar to nuclear protein in testis (predicted) (RGD1564529_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717742-S	ILMN_296461	LOC685455	XR_006192.1	XR_006192.1		685455	109512796	XR_006192.1	LOC685455		ILMN_1358242	0004780100	S	505	CTACAGGCTGACCAGGCTGAGGCTCGCAGGTCTAAGACCAAGGAAGCACA	Un|NW_047829.1	-	2982965-2983014		PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC685455), mRNA.					
Rattus norvegicus	RefSeq	GI_47576750-S	ILMN_262672	OLR176	NM_001000178.1	NM_001000178.1		293321	47576750	NM_001000178.1	Olr176	NP_001000178.1	ILMN_1362656	0005900050	S	194	TGGCCTTACTCTCCTTCACTGATGTTACCTGGTGTACTACCACTGTGCCC	1	-	162626837-162626886	1q33	Rattus norvegicus olfactory receptor 176 (Olr176), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162722557-162721601_ORF; Olr176	ratchr1-162722557-162721601_ORF; Olr176
Rattus norvegicus	RefSeq	GI_34935362-S	ILMN_286983	CHX10	XM_001058888.1	XM_001058888.1		171360	109479655	XM_001058888.1	Chx10	XP_001058888.1	ILMN_2039534	0007380048	S	919	ATTCCTGCGCCCCTTGGCTACTGGGGATGCACAAAAAGTCGCTGGAGGCA				6q31	PREDICTED: Rattus norvegicus ceh-10 homeo domain containing homolog (C. elegans), transcript variant 2 (Chx10), mRNA.					
Rattus norvegicus	RefSeq	GI_62642849-S	ILMN_64164	LOC310045	XM_226733.3	XM_226733.3		310045	62642849	XM_226733.3	LOC310045	XP_226733.3	ILMN_1372388	0001170215	S	1238	CGTGCACTCGAAAAACATCACCGGGGCCTTTCCAGATGGTGGCTTTCTGG					PREDICTED: Rattus norvegicus similar to microtubule associated serine/threonine kinase 2 (LOC310045), mRNA.					
Rattus norvegicus	RefSeq	GI_62643935-S	ILMN_273430	GPR89_PREDICTED	XM_001060170.1	XM_001060170.1		362003	109467226	XM_001060170.1	Gpr89_predicted	XP_001060170.1	ILMN_1365884	0006840131	S	1688	TCTGAGGCTGTGCAAAGTGAGGAGGAGAGGGCCAGGGCTGAGAATATCCG				2q34	PREDICTED: Rattus norvegicus G protein-coupled receptor 89 (predicted) (Gpr89_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928997-S	ILMN_273430	GPR89_PREDICTED	XM_001060170.1	XM_001060170.1		362003	109467226	XM_001060170.1	Gpr89_predicted	XP_001060170.1	ILMN_1374215	0002810411	S	2593	GGAGGGCCGGGTTCCGGTTCTTTCTATGTGGTATCTTCCAACGTGCAACT				2q34	PREDICTED: Rattus norvegicus G protein-coupled receptor 89 (predicted) (Gpr89_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758891-S	ILMN_285321	CALB2	NM_053988.1	NM_053988.1		117059	16758891	NM_053988.1	Calb2	NP_446440.1	ILMN_1352485	0006940088	S	1102	GTTGGTGGGTAGGGGCACAGGTGGGGCTTCCCTAGTCTCTTTGCTGTGAT	19	-	40023358-40023407	19q12	Rattus norvegicus calbindin 2 (Calb2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC105356	MGC105356
Rattus norvegicus	RefSeq	GI_58865865-A	ILMN_296014	PXN	NM_001012147.1	NM_001012147.1		360820	58865865	NM_001012147.1	Pxn	NP_001012147.1	ILMN_1376247	0005420347	S	2306	GTAGACAGTGCCAGCATAAACTCACCCACAGGCCACTGAAGGCACCCTGG	12	-	42323547-42323596	12q16	Rattus norvegicus paxillin (Pxn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758167-S	ILMN_267107	FGF13	NM_053428.1	NM_053428.1		84488	16758167	NM_053428.1	Fgf13	NP_445880.1	ILMN_1355999	0002940746	S	1872	CTCTGTGTTCCAAAAGTGAACATAGCATGTACAGGCAGTTTTCTGCCCTG	X	-	144199620-144199669	Xq36	Rattus norvegicus fibroblast growth factor 13 (Fgf13), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647662-S	ILMN_54181	LOXL3_PREDICTED	XM_232107.4	XM_232107.4		312478	109472216	XM_232107.4	Loxl3_predicted	XP_232107.3	ILMN_1375087	0002570600	S	2372	GCGCTACCCAGGCCAGACCAGTAACCAGATTGTCTAAAATGCTACCGCCC	4	+	117261780-117261816:117261817-117261829	4q34	PREDICTED: Rattus norvegicus lysyl oxidase-like 3 (predicted) (Loxl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777685-S	ILMN_289912	OLR947	NM_001001369.1	NM_001001369.1		288876	47777685	NM_001001369.1	Olr947	NP_001001369.1	ILMN_1359041	0003290619	S	798	GGTGCTAAGTAAAGGAGTTGCCATGCTCAACACCTCTGTAGCTCCCATGC	7	-	4776620-4776669	7q11	Rattus norvegicus olfactory receptor 947 (Olr947), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr947	Olr947
Rattus norvegicus	RefSeq	GI_62643374-S	ILMN_286782	LOC689108	XM_001069558.1	XM_001069558.1		689108	109464794	XM_001069558.1	LOC689108	XP_001069558.1	ILMN_1371334	0006590128	S	994	CTTCCGTGGTGCCTTCTCCAACATCCTTCGTGGTACAGGGGGTGCTTTGG	2	+	127667433-127667482	2q26	PREDICTED: Rattus norvegicus similar to solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 (LOC689108), mRNA.					
Rattus norvegicus	RefSeq	GI_16758967-S	ILMN_288113	NCDN	NM_053543.1	NM_053543.1		89791	16758967	NM_053543.1	Ncdn	NP_445995.1	ILMN_1357385	0003360576	S	3592	CCAGCAGGAACTACCTTTCTGAACCCGTGGAGACCCGCATACACCTGACC				5q36	Rattus norvegicus neurochondrin (Ncdn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IDA]		MGC93259; Norbin	MGC93259; Norbin
Rattus norvegicus	RefSeq	GI_27706741-S	ILMN_273055	CDX4_PREDICTED	XM_001055316.1	XM_001055316.1		302400	109512115	XM_001055316.1	Cdx4_predicted	XP_001055316.1	ILMN_1364168	0006380632	S	483	CGCGTGGATGCGCAAGACTGTGCAGGTGACCGGGAAAACCAGGACAAAAG				Xq31	PREDICTED: Rattus norvegicus caudal type homeo box 4 (predicted) (Cdx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640843-S	ILMN_57008	ADAMTS17_PREDICTED	XM_218753.4	XM_218753.4		293004	109458894	XM_218753.4	Adamts17_predicted	XP_218753.4	ILMN_1357726	0006450692	S	1609	CTGCCAGGCATGCACTACAGCGCCAACGAGCAGTGCCAGATTCTGTTTGG	1	+	121490989-121491038	1q22	PREDICTED: Rattus norvegicus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17 (predicted) (Adamts17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659298-S	ILMN_269758	RGD1562617_PREDICTED	XM_001059184.1	XM_001059184.1		501854	109498598	XM_001059184.1	RGD1562617_predicted	XP_001059184.1	ILMN_1355695	0004590136	S	562	GCCGAGAATCACCTTGCAGACTCCATCAAGCTCTCTCCGGGCCAACCAAG				13q13	PREDICTED: Rattus norvegicus similar to RAB7-like protein (predicted) (RGD1562617_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650771-S	ILMN_262746	LOC683618	XM_001063166.1	XM_001063166.1		683618	109512005	XM_001063166.1	LOC683618	XP_001063166.1	ILMN_1373738	0003780286	S	1231	CAGCTTGTGCGAGCGATGAGGGAGAAGTAATTGTTTTTGGTGGTTGTGCC					PREDICTED: Rattus norvegicus similar to kelch domain containing 2 (LOC683618), mRNA.					
Rattus norvegicus	RefSeq	GI_62639468-S	ILMN_56638	LOC292811	XM_214901.3	XM_214901.3		292811	62639468	XM_214901.3	LOC292811	XP_214901.3	ILMN_1367764	0004010132	S	2321	CGCCCTGCAGAGGAAAGGCATACAGTGCGCCACAGCTCCTCAAGACACTT				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610507L03 (predicted) (LOC292811), mRNA.					
Rattus norvegicus	RefSeq	GI_23397675-S	ILMN_293950	OAZ1	NM_139081.1	NM_139081.1		25502	23397675	NM_139081.1	Oaz1	NP_620781.1	ILMN_1349040	0004070451	S	834	CGCTCACTCCATTAGCGGGGTGCTTCTTCGAGCTGAATGCTGTGTTTGTC	7	-	10394657-10394706	7q11	Rattus norvegicus ornithine decarboxylase antizyme 1 (Oaz1), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The stopping, prevention or reduction of the activity of the enzyme ornithine decarboxylase [goid 8073] [evidence ISS]; The stopping, prevention or reduction of the activity of the enzyme ornithine decarboxylase [goid 8073] [evidence IEA]	ODC-Az; ODCAC; Oaz	ODC-Az; ODCAC; Oaz
Rattus norvegicus	RefSeq	GI_62665283-S	ILMN_271636	FUK_PREDICTED	XM_001077423.1	XM_001077423.1		307848	109508893	XM_001077423.1	Fuk_predicted	XP_001077423.1	ILMN_1351504	0005220168	S	4395	TAAGCCGAAGGCCCAGACTGCACCACTGCACGGAAACCAGGAAGCAAGGA				19q12	PREDICTED: Rattus norvegicus fucokinase (predicted) (Fuk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665285-S	ILMN_271636	FUK_PREDICTED	XM_001077423.1	XM_001077423.1		307848	109508893	XM_001077423.1	Fuk_predicted	XP_001077423.1	ILMN_1363641	0006370053	S	3655	CGGTAGGGGCAGGAAGAGTGGAGCTGTTTTCAGGTCTGTGGCAGTGAACC				19q12	PREDICTED: Rattus norvegicus fucokinase (predicted) (Fuk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870368-S	ILMN_296226	ZFP393_PREDICTED	XM_001072022.1	XM_001072022.1		298449	109477084	XM_001072022.1	Zfp393_predicted	XP_001072022.1	ILMN_1357681	0002570180	S	781	GACTGTGGAAAAGCTTACACCAAGCGCTCTCACCTCGTGAGTCACCTACG				5q36	PREDICTED: Rattus norvegicus zinc finger protein 393 (predicted) (Zfp393_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41055442-S	ILMN_285442	MUSTN1	NM_181368.3	NM_181368.3		290553	41055442	NM_181368.3	Mustn1	NP_852033.1	ILMN_1373566	0001400050	S	745	CCCGAGGTGGGTCGGGGAATGATGTGTGTGCTTTCAGAACCACTGAGGTG	16	+	6313895-6313944	16p16	Rattus norvegicus musculoskeletal, embryonic nuclear protein 1 (Mustn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]	The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IDA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IDA]		Mustang	Mustang
Rattus norvegicus	RefSeq	GI_62661559-S	ILMN_49295	SAP18_PREDICTED	XM_214170.2	XM_214170.2		290284	62661559	XM_214170.2	Sap18_predicted	XP_214170.2	ILMN_1365452	0006180551	S	690	TGTTTTAAGCCCTTCTGTAAAATATGAAGAAAAAAGTGCTCTTAGCATTC				15p12	PREDICTED: Rattus norvegicus sin3-associated polypeptide, 18kDa (predicted) (Sap18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646178-S	ILMN_49186	LOC296516	XM_231013.3	XM_231013.3		296516	62646178	XM_231013.3	LOC296516	XP_231013.3	ILMN_1371315	0005080341	S	424	ACTTGGTGAAGCAAGAGGACCAACCAGCTAAAGGTCACATTCTGGGCGGC				3q41	PREDICTED: Rattus norvegicus similar to Cystatin S precursor (LM protein) (LOC296516), mRNA.					
Rattus norvegicus	RefSeq	GI_62647792-S	ILMN_60703	RGD1561296_PREDICTED	XM_575607.2	XM_575607.2		362399	109472337	XM_575607.2	RGD1561296_predicted	XP_575607.2	ILMN_1363570	0002680309	S	4316	GCCTGGCTTTGTGGTGGAAGCCCTTTCCTAGTACAGCCATCATCTCTAGG	4	+	124643461-124643510	4q34	PREDICTED: Rattus norvegicus similar to cDNA sequence BC022133 (predicted) (RGD1561296_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31083335-S	ILMN_277137	PDYN	NM_019374.2	NM_019374.2		29190	31083335	NM_019374.2	Pdyn	NP_062247.1	ILMN_1358069	0006650497	S	2061	AGATTGGTAGGTTAAGGAGATGGGGCTGGACGGGAGAGAAAGCAGTCTGG	3	-	117291275-117291324	3q36	Rattus norvegicus prodynorphin (Pdyn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence TAS]	Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect [goid 1515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62646856-S	ILMN_292158	RGD1565400_PREDICTED	XR_007469.1	XR_007469.1		500027	109473127	XR_007469.1	RGD1565400_predicted		ILMN_1357328	0006110519	S	318	GCTCACTGAAGCCACACTGAACCCCAGGGCCAACCATGAGAAGATCATGT				4q21	PREDICTED: Rattus norvegicus similar to actin 3 - fruit fly (Drosophila melanogaster) (fragments) (predicted) (RGD1565400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655093-S	ILMN_272683	CLK1	XM_001063325.1	XM_001063325.1		301434	109487117	XM_001063325.1	Clk1	XP_001063325.1	ILMN_1356069	0000360156	S	1416	TTCTCGGCGCTGTAAGCCTCTGAAGGAGTTTATGCTGTCTCAGGATGCCG				9q31	PREDICTED: Rattus norvegicus CDC-like kinase 1 (Clk1), mRNA.					
Rattus norvegicus	RefSeq	GI_40254741-S	ILMN_279700	NCF1	NM_053734.2	NM_053734.2		114553	40254741	NM_053734.2	Ncf1	NP_446186.2	ILMN_1355786	0001410315	S	2321	GGACTGGGGTTCAATTTCCAGCATTCACAGGGTAGGTCACATCGGCCTGT	12	+	23586855-23586904	12q12	Rattus norvegicus neutrophil cytosolic factor 1 (Ncf1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The directed killing of a target cell by a leukocyte [goid 1909] [evidence ISS]; The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence IEA]; The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; A defense response that is mediated by cells [goid 6968] [evidence IEA]; A defense response that is mediated by cells [goid 6968] [evidence ISS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 45730] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence ISS]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence IEA]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence TAS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence IDA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	Ncf-1; p47phox	Ncf-1; p47phox
Rattus norvegicus	RefSeq	GI_62651084-S	ILMN_290384	RGD1307392_PREDICTED	XM_001060869.1	XM_001060869.1		299209	109479695	XM_001060869.1	RGD1307392_predicted	XP_001060869.1	ILMN_1364317	0002350156	S	430	CCAGAGCATGAAGTGCGAGAGGATGATGTGGGCTGGGACTGGGACCATCT				6q31	PREDICTED: Rattus norvegicus similar to 1700019E19Rik protein (predicted) (RGD1307392_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948529-S	ILMN_300167	RGD1303272	NM_001004280.1	NM_001004280.1		362134	51948529	NM_001004280.1	RGD1303272	NP_001004280.1	ILMN_1373132	0004810603	S	1017	TGCAGCACTGTCTGTCCGCAACGGATTGCTCTATCATGGACCGCAGCTTC	3	-	31224373-31224422	3q12	Rattus norvegicus similar to RIKEN cDNA 2010311D03 (RGD1303272), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]			MGC93805	MGC93805
Rattus norvegicus	RefSeq	GI_62718849-S	ILMN_68121	LOC501498	XM_580203.1	XM_580203.1		501498	62718849	XM_580203.1	LOC501498	XP_580203.1	ILMN_1366176	0006290465	S	361	CCAGAGTCAGCAGAAATGGCATGCATCAGCAACACTGAGCCAGGAGATGG					PREDICTED: Rattus norvegicus LOC501498 (LOC501498), mRNA.					
Rattus norvegicus	RefSeq	GI_62657586-S	ILMN_275745	ZFP294	XM_001066804.1	XM_001066804.1		288308	109493854	XM_001066804.1	Zfp294	XP_001066804.1	ILMN_1351925	0003940725	S	5117	CACTGGGTTCAATAACAGTGGAGAGCGGGAAAAGAGTCGGGGTGGCCGTG				11q11	PREDICTED: Rattus norvegicus zinc finger protein 294 (Zfp294), mRNA.					
Rattus norvegicus	RefSeq	GI_34876904-S	ILMN_283187	RGD1311053_PREDICTED	XM_001056985.1	XM_001056985.1		306226	109503682	XM_001056985.1	RGD1311053_predicted	XP_001056985.1	ILMN_1365847	0000130010	S	1220	GGATGCCTGACAAAGGATACTGGGCCGTGAAAACTGACCTGCACCCGTGG				16p16	PREDICTED: Rattus norvegicus similar to double homeobox protein (predicted) (RGD1311053_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577934-S	ILMN_298286	OLR112	NM_001000150.1	NM_001000150.1		293250	47577934	NM_001000150.1	Olr112	NP_001000150.1	ILMN_1369862	0000520519	S	342	GACAGAGTCTGGTATTCTGCTCTCCATGGCATTTGACCGTTATGTGGCCA	1	+	161331141-161331190	1q32	Rattus norvegicus olfactory receptor 112 (Olr112), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr112	Olr112
Rattus norvegicus	RefSeq	GI_62657338-S	ILMN_272539	TRIM47_PREDICTED	XM_001081685.1	XM_001081685.1		287824	109492229	XM_001081685.1	Trim47_predicted	XP_001081685.1	ILMN_1370318	0006660022	S	1540	ACTCGTGGATGTGCCTGGGAGTCACCTACCGTCGCAACCCTTCGATGAGC				10q32.3	PREDICTED: Rattus norvegicus tripartite motif protein 47 (predicted) (Trim47_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645185-S	ILMN_286169	KLHL23_PREDICTED	XM_001059088.1	XM_001059088.1		311114	109470049	XM_001059088.1	Klhl23_predicted	XP_001059088.1	ILMN_1352774	0006040167	S	2855	GCCACTAACCAGATTTTGTGACTCGAGCTTCCTCACCCATGTACACCGGC				3q21	PREDICTED: Rattus norvegicus kelch-like 23 (Drosophila) (predicted) (Klhl23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657593-S	ILMN_276230	BACH1_PREDICTED	XM_001067152.1	XM_001067152.1		304127	109493861	XM_001067152.1	Bach1_predicted	XP_001067152.1	ILMN_1371410	0000460465	S	2027	CCGGACTTTGTCAACAAGTGTGCAAGGAAGCCGCACTGAGTCCAGAGCAG				11q11	PREDICTED: Rattus norvegicus BTB and CNC homology 1 (predicted), transcript variant 2 (Bach1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645997-S	ILMN_63285	LOC499903	XM_575249.1	XM_575249.1		499903	62645997	XM_575249.1	LOC499903	XP_575249.1	ILMN_1354196	0002340019	S	1062	GGAGACCTCAAGTGAAGCGCTGGCATCTTTGTGGCATGCAGCTCCTTCCT				3q41	PREDICTED: Rattus norvegicus similar to N-ethylmaleimide sensitive fusion protein attachment protein beta (LOC499903), mRNA.					
Rattus norvegicus	RefSeq	GI_62655203-S	ILMN_49285	VIL1_PREDICTED	XM_237288.4	XM_237288.4		316521	109486146	XM_237288.4	Vil1_predicted	XP_237288.3	ILMN_1350225	0000670100	S	3071	GTCTCATCCTCTTTCATACTCAAAAGGGGAAGCTAAGGCCAAGGCTGGGC	9	+	73776116-73776165	9q33	PREDICTED: Rattus norvegicus villin 1 (predicted) (Vil1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645373-S	ILMN_55637	FNBP4	XM_230291.4	XM_230291.4		311183	109468412	XM_230291.4	Fnbp4	XP_230291.4	ILMN_1371331	0002100161	S	3065	CCAGCGAAGAGGACCGGGAATCGACTGCACAGAAGCGAATTGAGGAATGG	3	+	75140401-75140450	3q24	PREDICTED: Rattus norvegicus formin binding protein 4 (Fnbp4), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666234-S	ILMN_64407	LOC502465	XM_577945.1	XM_577945.1		502465	62666234	XM_577945.1	LOC502465	XP_577945.1	ILMN_1374556	0000130746	S	975	TGCCAAGAACAGGCTCTCACTCAGGGATGCAACACGGGACCTCTTGAACT					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502465), mRNA.					
Rattus norvegicus	RefSeq	GI_8392998-S	ILMN_286469	ZFP36L1	NM_017172.1	NM_017172.1		29344	8392998	NM_017172.1	Zfp36l1	NP_058868.1	ILMN_1372236	0006380717	S	2610	TCTCCTTAGGCCTTTCACAGGTAGGACTGAGAATGTATAAGTTCTGTGAC	6	-	103119615-103119664	6q24	Rattus norvegicus zinc finger protein 36, C3H type-like 1 (Zfp36l1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps: poly(A) tail shortening, deadenylylation-dependent decapping, and decay of the transcript body, and that can regulate mRNA stability [goid 288] [evidence IEA]; A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps: poly(A) tail shortening, deadenylylation-dependent decapping, and decay of the transcript body, and that can regulate mRNA stability [goid 288] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 6402] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence ISS]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	TIS11b; ERF1; Berg36; cMG1; Brf1	TIS11b; ERF1; Berg36; cMG1; Brf1
Rattus norvegicus	RefSeq	GI_20544179-S	ILMN_265185	OLIG1	NM_021770.2	NM_021770.2		60394	20544179	NM_021770.2	Olig1	NP_068538.1	ILMN_1360413	0006520035	S	1886	ACCACAGCAAGGCAGCTGAAGAACTCCTTGGACCAGTGCATGCGTCGATG	11	+	31246166-31246215	11q11	Rattus norvegicus oligodendrocyte transcription factor 1 (Olig1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Olg1	Olg1
Rattus norvegicus	RefSeq	GI_62660181-S	ILMN_292381	RGD1562073_PREDICTED	XR_008504.1	XR_008504.1		364108	109500321	XR_008504.1	RGD1562073_predicted		ILMN_1367784	0000580114	S	162	GCTACGTCACGCATCTGAGGAGGCGGATTCAGAGAGGTCCTGTGAGAGCT				14p22	PREDICTED: Rattus norvegicus similar to ribosomal protein S17 (predicted) (RGD1562073_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640841-S	ILMN_56924	CHSY1_PREDICTED	XM_218759.4	XM_218759.4		292999	109458887	XM_218759.4	Chsy1_predicted	XP_218759.4	ILMN_1354592	0004560497	S	2569	ATGTGGCTGGAGAAGAATGACCCCAGTTACAGCAGAGGCGGCAACGGCTC	1	+	120598672-120598721	1q22	PREDICTED: Rattus norvegicus carbohydrate (chondroitin) synthase 1 (predicted) (Chsy1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658728-S	ILMN_277054	RGD1307391_PREDICTED	XM_001077322.1	XM_001077322.1		360791	109497193	XM_001077322.1	RGD1307391_predicted	XP_001077322.1	ILMN_1356328	0000360112	S	2210	TGGAACAAAGAGAGGCTGGGGCCCTGAGACCTGGGAAAGAGGGGTCTGTA					PREDICTED: Rattus norvegicus LOC360791 (predicted) (RGD1307391_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538855-S	ILMN_274519	ACP1	NM_021262.2	NM_021262.2		24161	40538855	NM_021262.2	Acp1	NP_067085.1	ILMN_1361506	0006590110	S	1039	TGATGATGGGCCTGGAACTCCAGCAGGCCATCCTGGGCTGTACAGTGACT	6	-	91631707-91631756	6q24	Rattus norvegicus acid phosphatase 1, soluble (Acp1), transcript variant 1, mRNA.	Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence NAS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA];  [goid 4726] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664054-S	ILMN_53337	LOC361288	XM_341573.2	XM_341573.2		361288	62664054	XM_341573.2	LOC361288	XP_341574.2	ILMN_1362103	0000430687	S	482	TCGGCAAATGCCCACTGAGGTCGGGAGCAAAGCCGAGGAGATCCAAGTGT				18p13	PREDICTED: Rattus norvegicus similar to FUN14 domain containing 2 (LOC361288), mRNA.					
Rattus norvegicus	RefSeq	GI_62655568-S	ILMN_56223	UNC5CL	XM_236916.4	XM_236916.4		301225	109486492	XM_236916.4	Unc5cl	XP_236916.4	ILMN_1372117	0002480735	S	1909	AGCTGGGATTGTGAGGAACGTCGGCTTCTTTGAACTTGCCTTGGAGTCGG	9|NW_047821.1	-	181990-182039		PREDICTED: Rattus norvegicus unc-5 homolog C (C. elegans)-like (Unc5cl), mRNA.					
Rattus norvegicus	RefSeq	GI_62649140-S	ILMN_59368	LOC362536	XM_347061.2	XM_347061.2		362536	62649140	XM_347061.2	LOC362536	XP_347062.2	ILMN_1374762	0004060154	S	748	TGCCTTGTCACAGCATTTCGAGGGAGAGAGGCAAGACTGAGTGGGAAGAC				5q31	PREDICTED: Rattus norvegicus hypothetical LOC362536 (LOC362536), mRNA.					
Rattus norvegicus	RefSeq	GI_34877943-S	ILMN_272838	TWSG1_PREDICTED	XM_001072466.1	XM_001072466.1		363294	109487597	XM_001072466.1	Twsg1_predicted	XP_001072466.1	ILMN_1366366	0001850338	S	694	CATGGGAGCGTCCAAATACCGCTGGTTTCACAACGCCTGCTGCGAGTGCG				9q37	PREDICTED: Rattus norvegicus twisted gastrulation homolog 1 (Drosophila) (predicted) (Twsg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661090-S	ILMN_58241	LOC316933	XM_229508.4	XM_229508.4		316933	109501273	XM_229508.4	LOC316933	XP_229508.2	ILMN_1358353	0002650441	S	75	AGGAGAGGGGAGAACAAGGAGAGACCAGACTGAGGCAGAAGAAAGCTGGC	15	+	6190257-6190306	15p16	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC316933), mRNA.					
Rattus norvegicus	RefSeq	GI_62639425-S	ILMN_54515	LOC361558	XM_346983.2	XM_346983.2		361558	62639425	XM_346983.2	LOC361558	XP_346984.2	ILMN_1371363	0001580504	S	1203	ACAGAAGCTGGAGAACATGCTGGACACGGGACCTTCCTGACATCCTCCTG					PREDICTED: Rattus norvegicus hypothetical LOC361558 (LOC361558), mRNA.					
Rattus norvegicus	RefSeq	GI_62645735-S	ILMN_50351	LOC366139	XM_345407.2	XM_345407.2		366139	62645735	XM_345407.2	LOC366139	XP_345408.2	ILMN_1370702	0001690403	S	504	TCCTTCAACCTCCAATCAAGATTAGACTACCCCAGAGCCTCAGACGCTGG				3q31	PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC366139), mRNA.					
Rattus norvegicus	RefSeq	GI_47576356-S	ILMN_285083	OLR1542	NM_001000531.1	NM_001000531.1		363763	47576356	NM_001000531.1	Olr1542	NP_001000531.1	ILMN_1358115	0003120132	S	774	GTATGCTCAACCACATTCAGTCAATGAAGGGGATAAAGACGTGCCGGTAG	11	-	42059775-42059824	11q12	Rattus norvegicus olfactory receptor 1542 (Olr1542), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1542	Olr1542
Rattus norvegicus	RefSeq	GI_62650079	ILMN_62324	PHF13_PREDICTED	XM_233700.4	XM_233700.4		313742	109475876	XM_233700.4	Phf13_predicted	XP_233700.4	ILMN_1650979	0003360079	S	3629	GCTCCTGGTTGATGGCTGATGGCGGGAGGGAAAGGTGTCATCCCCAAGCA	5	-	169215967-169216016	5q36	PREDICTED: Rattus norvegicus PHD finger protein 13 (predicted) (Phf13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646963-S	ILMN_66864	LOC312199	XM_231567.3	XM_231567.3		312199	62646963	XM_231567.3	LOC312199	XP_231567.3	ILMN_1362375	0000670136	S	2432	GTATCATCGGAAAGCCCAGCAGGAGGAAGGGGTGAGACAGGGTGACTTGC				4q22	PREDICTED: Rattus norvegicus similar to scruin like at the midline CG5186-PA (predicted) (LOC312199), mRNA.					
Rattus norvegicus	RefSeq	GI_58219507-S	ILMN_300686	FICD	NM_001010946.1	NM_001010946.1		288741	58219507	NM_001010946.1	Ficd	NP_001010946.1	ILMN_1355802	0000630750	S	1617	TCGCCAACGAGGGTGACGTGCGGCCATTCATCCGCTTCATAGCCAAGTGT	12	-	43924920-43924969	12q16	Rattus norvegicus FIC domain containing (Ficd), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642417-S	ILMN_63444	ACTR1A_PREDICTED	XM_238177.3	XM_238177.3		294010	62642417	XM_238177.3	Actr1a_predicted	XP_238177.3	ILMN_1357207	0002690315	S	2	GGCTGAAAGACACTACAAACCCCATGGCACCATATGTCGGAAATACACTG				1q54	PREDICTED: Rattus norvegicus ARP1 actin-related protein 1 homolog A (yeast) (predicted) (Actr1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576970-S	ILMN_292032	OLR790	NM_001000915.1	NM_001000915.1		405230	47576970	NM_001000915.1	Olr790	NP_001000915.1	ILMN_1352999	0000430594	S	302	TCTTTTTCATCCATGTCATTGGTGGTGTGGAGGTGATGCTGCTCGTAGGC	3	-	97830556-97830605	3q34	Rattus norvegicus olfactory receptor 790 (Olr790), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr790	Olr790
Rattus norvegicus	RefSeq	GI_62665347-S	ILMN_291794	USP10	NM_001034146.1	NM_001034146.1		307905	77628028	NM_001034146.1	Usp10	NP_001029318.1	ILMN_1369663	0002760020	S	2996	GACATAGACATCGCGGGTCAGACATGTGGGTAGACGTCAGGCTGCAGAGG	19	+	50244412-50244461	19q12	Rattus norvegicus ubiquitin specific peptidase 10 (Usp10), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	MGC124997	MGC124997
Rattus norvegicus	RefSeq	GI_62638802-S	ILMN_67470	LOC499060	XM_574340.1	XM_574340.1		499060	62638802	XM_574340.1	LOC499060	XP_574340.1	ILMN_1365922	0004760450	S	1928	TACCGAGAAATGTCCTCTGTGCATCGTCTGGACCCACTCATCACTGGCAG				1q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14345 (LOC499060), mRNA.					
Rattus norvegicus	RefSeq	GI_62656860-S	ILMN_271142	SGCA_PREDICTED	XM_001081302.1	XM_001081302.1		303468	109491696	XM_001081302.1	Sgca_predicted	XP_001081302.1	ILMN_1367518	0002100647	S	1261	CAAACAGGCAGATGGATGGTAGTAGGGAGGGGCGTGGGTGCTTGGAGTCA				10q31	PREDICTED: Rattus norvegicus sarcoglycan, alpha (dystrophin-associated glycoprotein) (predicted) (Sgca_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538857-S	ILMN_292204	HPGD	NM_024390.2	NM_024390.2		79242	40538857	NM_024390.2	Hpgd	NP_077366.2	ILMN_1367170	0003520402	S	1313	GGGCCAGTGTTAGGGAATGAATTCCAGTGTAGCCATGTCCCAGTGACAAG	16	-	37420217-37420266	16p11	Rattus norvegicus hydroxyprostaglandin dehydrogenase 15 (NAD) (Hpgd), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence ISS]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence ISS]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence ISS]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the reaction: (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprost-13-enoate + NAD+ = (5Z,13E)-11-alpha-hydroxy-9,15-dioxoprost-13-enoate + NADH + H+ [goid 16404] [evidence IDA]; Catalysis of the reaction: (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprost-13-enoate + NAD+ = (5Z,13E)-11-alpha-hydroxy-9,15-dioxoprost-13-enoate + NADH + H+ [goid 16404] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence ISS]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence ISS]; Catalysis of the reaction: (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprost-13-enoate + NAD+ = (5Z,13E)-11-alpha-hydroxy-9,15-dioxoprost-13-enoate + NADH + H+ [goid 16404] [evidence ISS]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865759-A	ILMN_300799	RNF32	NM_001012095.1	NM_001012095.1		311936	58865759	NM_001012095.1	Rnf32	NP_001012095.1	ILMN_1376392	0003390164	S	1376	TGGCCAGGAGATCACTGAGGAGGACTGGGAGAAAATCCAAGCGCAGGCTG	4	-	1349506-1349510:1350191-1350235	4q11	Rattus norvegicus ring finger protein 32 (Rnf32), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577210-S	ILMN_278798	OLR365	NM_001001046.1	NM_001001046.1		405932	47577210	NM_001001046.1	Olr365	NP_001001046.1	ILMN_1365327	0000050487	S	896	AAAATGCATTTAAGAAGGTTGTTGGAAAATTAATGTCTTCATTTAGCTGA	1	+	216547399-216547448	1q43	Rattus norvegicus olfactory receptor 365 (Olr365), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr365	Olr365
Rattus norvegicus	RefSeq	GI_62655931-S	ILMN_62691	LOC303019	XM_220274.3	XM_220274.3		303019	62655931	XM_220274.3	LOC303019	XP_220274.3	ILMN_1365799	0006110750	S	5429	TCCCCAGGGCAGCGAACTCACAGGAATCGGGTTGTGGCTCGGTAGTGAAC				10q12	PREDICTED: Rattus norvegicus similar to neuralized homolog (LOC303019), mRNA.					
Rattus norvegicus	RefSeq	GI_62644372-S	ILMN_49834	LOC295470	XM_227709.3	XM_227709.3		295470	62644372	XM_227709.3	LOC295470	XP_227709.3	ILMN_1355377	0000940278	S	1139	GGCTGATGACCTCGCCTACAGCCCTGCAGTTGTGGGAGACACTTCTGAGA				2q42	PREDICTED: Rattus norvegicus similar to OTTMUSP00000000438 (LOC295470), mRNA.					
Rattus norvegicus	RefSeq	GI_62639870	ILMN_68017	LOC502331	XM_577796.1	XM_577796.1		502331	62639870	XM_577796.1	LOC502331	XP_577796.1	ILMN_1650361	0000360047	S	1505	CCAGACTAACGAGAGGACACAGAGAGAGGGCTTCTAAAAAGAGGAATGGG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502331), mRNA.					
Rattus norvegicus	RefSeq	GI_62652622-S	ILMN_55464	TSTA3_PREDICTED	XM_216968.4	XM_216968.4		300036	109480886	XM_216968.4	Tsta3_predicted	XP_216968.1	ILMN_1361133	0002340471	S	911	GTTGCGGTCCTACTTGCCTGACTTCTGTTTCACACCCTTCAAGCAGGCTG	7	-	113929790-113929793:113930079-113930124	7q34	PREDICTED: Rattus norvegicus tissue specific transplantation antigen P35B (predicted) (Tsta3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645177-S	ILMN_288724	NOSTRIN	NM_001024260.1	NM_001024260.1		311111	66730387	NM_001024260.1	Nostrin	NP_001019431.1	ILMN_1364806	0006520750	S	1256	CCCGGCCTCTTTTGACGAAGAGATTAGAGAAAGCTGAGAGCAAGGCCCCC	3	+	51352492-51352541	3q21	Rattus norvegicus nitric oxide synthase trafficker (Nostrin), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653450-S	ILMN_279628	RGD1563958_PREDICTED	XM_001056192.1	XM_001056192.1		315521	109484456	XM_001056192.1	RGD1563958_predicted	XP_001056192.1	ILMN_1368456	0002690364	S	152	AAGCGAAAATGGTGGAAACCCAGAGGCATTGAGAACAGGGTGCGGAGAAG				8q13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L32 (predicted) (RGD1563958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465520-S	ILMN_285119	HMGCS2	NM_173094.1	NM_173094.1		24450	27465520	NM_173094.1	Hmgcs2	NP_775117.1	ILMN_1363947	0006370670	S	1737	TGGGTGACCCTCCCTGAAGCAGTGAGCACCACAGGTTCTGCTGTGGACCA	2	+	193143002-193143051	2q34	Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial) (Hmgcs2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The chemical reactions and pathways resulting in the formation of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Biosynthesis involves the formation of hydroxymethylglutaryl-CoA, which is cleaved to acetate and acetyl-CoA [goid 46951] [evidence TAS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence TAS]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence ISS]	Mt3h3mg; Hmgcs1	Mt3h3mg; Hmgcs1
Rattus norvegicus	RefSeq	GI_27661575-S	ILMN_290221	SUSD1_PREDICTED	XM_001061697.1	XM_001061697.1		298031	109476554	XM_001061697.1	Susd1_predicted	XP_001061697.1	ILMN_2039567	0005050735	S	1066	GTGACCACAGACAGCAAGACCCCAGAAGTGTGCCTGCACCTCCAACAAGG				5q24	PREDICTED: Rattus norvegicus sushi domain containing 1 (predicted) (Susd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649031-S	ILMN_290221	SUSD1_PREDICTED	XM_001061697.1	XM_001061697.1		298031	109476554	XM_001061697.1	Susd1_predicted	XP_001061697.1	ILMN_2038949	0006960196	S	2282	GGGAAGACCGAGTTGATGATGCACAGATATTCTGCCGGCTTCTCAGGCCT				5q24	PREDICTED: Rattus norvegicus sushi domain containing 1 (predicted) (Susd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641514-S	ILMN_291140	RGD1310799_PREDICTED	XM_001054307.1	XM_001054307.1		309060	109463045	XM_001054307.1	RGD1310799_predicted	XP_001054307.1	ILMN_1374362	0006590735	S	1462	GACCAGTTTACGGGCCAGGAGGACCTATCCTGTGATGAGTCAGATGGCTG				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930008G19 (predicted) (RGD1310799_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777707-S	ILMN_286508	OLR905	NM_001001355.1	NM_001001355.1		288797	47777707	NM_001001355.1	Olr905	NP_001001355.1	ILMN_1360176	0006520139	S	677	TCCCATCTGCCAGTCAGAGGAAAAAGGCTTTCTCTACTTGTTCCTCTCAC	7	-	3583161-3583210	7q11	Rattus norvegicus olfactory receptor 905 (Olr905), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr905	Olr905
Rattus norvegicus	RefSeq	GI_62648807-S	ILMN_272805	RGD1562567_PREDICTED	XM_001067718.1	XM_001067718.1		500440	109476358	XM_001067718.1	RGD1562567_predicted	XP_001067718.1	ILMN_1367183	0003610500	S	670	GTCGTGCTCGCTCGGATGCAGGCATGCTTCCCGCTGTTCAGAGCTCTGGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930001M12 gene (predicted) (RGD1562567_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090625-S	ILMN_301392	BRP16	NM_001007707.1	NM_001007707.1		315094	56090625	NM_001007707.1	Brp16	NP_001007708.1	ILMN_1352417	0006290270	S	2083	AGGTCCCCGACACCTGTAGTCTTCATGGGAGTTTGCAGTGTTCCAGCTTC	7	+	114421641-114421690	7q34	Rattus norvegicus brain protein 16 (Brp16), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94185	MGC94185
Rattus norvegicus	RefSeq	GI_62658047-S	ILMN_283995	RGD1563170_PREDICTED	XM_001054677.1	XM_001054677.1		498102	109494598	XM_001054677.1	RGD1563170_predicted	XP_001054677.1	ILMN_1360872	0005670537	S	1313	CTTTCCACCAGGGACAAGCCTTTGTGTGTCGAGATGAGGAGGGAGGTTGG				11q22	PREDICTED: Rattus norvegicus RGD1563170 (predicted) (RGD1563170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659853-S	ILMN_276894	LOC689985	XM_001072807.1	XM_001072807.1		689985	109498290	XM_001072807.1	LOC689985	XP_001072807.1	ILMN_1370480	0003520750	S	608	CTGCCCAGGGGACGGTGAGGATGAGCCAGCTAAAAACTGCAAACACCTCG	13	-	95377365-95377397:95377398-95377414	13q26	PREDICTED: Rattus norvegicus hypothetical protein LOC689985 (LOC689985), mRNA.					
Rattus norvegicus	RefSeq	GI_62662344-S	ILMN_63577	LOC502063	XM_577496.1	XM_577496.1		502063	62662344	XM_577496.1	LOC502063	XP_577496.1	ILMN_1358395	0004570735	S	1875	AAAGCTGTGGACAAGAAGGCCGCAGGAGCTGGCAAAGTCACCAAGTCTGG					PREDICTED: Rattus norvegicus LOC502063 (LOC502063), mRNA.					
Rattus norvegicus	RefSeq	GI_62655916-S	ILMN_270555	MARE	NM_001034936.1	NM_001034936.1		360505	77917565	NM_001034936.1	Mare	NP_001030108.1	ILMN_1357451	0003520184	S	2354	CAGAGTTCCTGACTGGCCTTAGGGGGATAGGCAACCCTAGCCTGGCAGAA	10	+	15642633-15642682	10q12	Rattus norvegicus alpha globin regulatory element containing gene (Mare), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC124858	MGC124858
Rattus norvegicus	RefSeq	GI_62664963-S	ILMN_278069	RGD1308706_PREDICTED	XM_001068411.1	XM_001068411.1		291925	109508531	XM_001068411.1	RGD1308706_predicted	XP_001068411.1	ILMN_1351218	0004920288	S	1036	GGGATAGGAGTGTGGTGGAAGACACAGCCAGAGCAGCAGACATGCTTGGT				19q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921524J17 (predicted) (RGD1308706_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641596-S	ILMN_48358	PKP3_PREDICTED	XM_219478.4	XM_219478.4		293619	109459592	XM_219478.4	Pkp3_predicted	XP_219478.3	ILMN_1362679	0000730037	S	2820	GGCTGCCCCTGGCCTGATAGCTTTGTGACGGGCAACATTGGGAATAAAGG	1	+	201287735-201287784	1q41	PREDICTED: Rattus norvegicus plakophilin 3 (predicted) (Pkp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667072-S	ILMN_272269	RGD1564177_PREDICTED	XM_001054841.1	XM_001054841.1		501592	109512107	XM_001054841.1	RGD1564177_predicted	XP_001054841.1	ILMN_1373906	0007000215	S	266	CGAGGCTGAGACCACGGGAGTCCTAGACAGGGACCCATGCACAGTGATTA				Xq31	PREDICTED: Rattus norvegicus RGD1564177 (predicted) (RGD1564177_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661425-S	ILMN_64123	LOC498510	XM_344397.2	XM_344397.2		498510	62661425	XM_344397.2	LOC498510	XP_344398.2	ILMN_1352613	0002340014	S	428	GGAAATTCCACAACCCTCACAGTAGGGGCACCTCTGACCCTGAACCACCC					PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC498510), mRNA.					
Rattus norvegicus	RefSeq	GI_62661678-S	ILMN_55488	LOC290348	XM_224362.3	XM_224362.3		290348	62661678	XM_224362.3	LOC290348	XP_224362.3	ILMN_1367868	0004920647	S	1854	CTAGAACTGGAATGTGGACGTTGTCCCAACAGGCCTTCCTCCAGAAGTGG				15p11	PREDICTED: Rattus norvegicus similar to envelope glycoprotein syncytin-B (LOC290348), mRNA.					
Rattus norvegicus	RefSeq	GI_62659336-S	ILMN_274000	CHIT1_PREDICTED	XM_001061784.1	XM_001061784.1		289032	109498647	XM_001061784.1	Chit1_predicted	XP_001061784.1	ILMN_1371329	0003940100	S	1182	AGGTTCCTTCTGCAACGAGGGCCAGTACCCTCTCATCCGGACACTACACC				13q13	PREDICTED: Rattus norvegicus chitinase 1 (chitotriosidase) (predicted) (Chit1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660596-S	ILMN_272552	CPEB2_PREDICTED	XM_001060239.1	XM_001060239.1		360949	109500745	XM_001060239.1	Cpeb2_predicted	XP_001060239.1	ILMN_1364353	0004210121	S	5565	CCCAGTTTCTGTATAGAATCGCACAAGTGGTTTATGGAGTGTTTGGATTG				14q21	PREDICTED: Rattus norvegicus cytoplasmic polyadenylation element binding protein 2 (predicted) (Cpeb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651372-S	ILMN_60348	LOC366757	XM_345744.2	XM_345744.2		366757	62651372	XM_345744.2	LOC366757	XP_345745.2	ILMN_1358650	0003130053	S	345	CCCTGAGAGCTGAGGACACTGCCATTTACTACTGTGCAAAACATGAACAC					PREDICTED: Rattus norvegicus similar to gamma-2a immunoglobulin heavy chain (LOC366757), mRNA.					
Rattus norvegicus	RefSeq	GI_62661996-I	ILMN_293551	LOC692006	XM_001080954.1	XM_001080954.1		692006	109501889	XM_001080954.1	LOC692006	XP_001080954.1	ILMN_1376148	0004570040	S	574	GTCACAGTGAACTCACCGACTCGCCGCCATCTTAGCCCCGTCACAGTGAA	15	-	56532417-56532466	15q11	PREDICTED: Rattus norvegicus similar to C12D12.1a (LOC692006), mRNA.					
Rattus norvegicus	RefSeq	GI_62642445-S	ILMN_64701	NEURL_PREDICTED	XM_219970.4	XM_219970.4		309459	109460192	XM_219970.4	Neurl_predicted	XP_219970.4	ILMN_1650627	0000060431	S	1828	CATCTGCCGTCGCCCCATCAAGGACATCATCAAGACCTACCGCAGCTCCT	1	+	252591735-252591784	1q54	PREDICTED: Rattus norvegicus neuralized-like (Drosophila) (predicted) (Neurl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656764-S	ILMN_265874	RGD1562272_PREDICTED	XM_001081219.1	XM_001081219.1		303433	109491632	XM_001081219.1	RGD1562272_predicted	XP_001081219.1	ILMN_1366503	0000610632	S	260	GCGGCAGAGGAAAGGGAGACCAAGAGTCAGGATGTCTCAGGTTTGACAGC				10q26	PREDICTED: Rattus norvegicus similar to TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (RGD1562272_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666912-S	ILMN_55699	POLA1	XM_242396.4	XM_242396.4		85241	109510821	XM_242396.4	Pola1	XP_242396.4	ILMN_1353900	0003440059	S	1685	CTGAGTACTTGGAAGTTAGATACTCGGCAGAAGTGCCACAGCTTCCACAG	X	-	80934796-80934820:80935634-80935658	Xq22	PREDICTED: Rattus norvegicus polymerase (DNA directed), alpha 1 (Pola1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IDA]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Progression through S phase, the part of the mitotic cell cycle during which DNA synthesis takes place [goid 84] [evidence ISS]; Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IMP]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence ISS]; The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork [goid 6272] [evidence ISS]; The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork [goid 6273] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork [goid 6272] [evidence ISS]; The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork [goid 6273] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IMP]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Interacting selectively with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate [goid 17076] [evidence IMP]; Interacting selectively with pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate [goid 19103] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666910-S	ILMN_55699	POLA1	XM_242396.4	XM_242396.4		85241	109510821	XM_242396.4	Pola1	XP_242396.4	ILMN_1362800	0000870398	S	4375	GATGTGTGAGGAGCCAACTTGTCGCAATCGCATTCGTCGTCTTCCCCTTC	X	-	80762498-80762547	Xq22	PREDICTED: Rattus norvegicus polymerase (DNA directed), alpha 1 (Pola1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IDA]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Progression through S phase, the part of the mitotic cell cycle during which DNA synthesis takes place [goid 84] [evidence ISS]; Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IMP]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence ISS]; The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork [goid 6272] [evidence ISS]; The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork [goid 6273] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork [goid 6272] [evidence ISS]; The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork [goid 6273] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IMP]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Interacting selectively with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate [goid 17076] [evidence IMP]; Interacting selectively with pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate [goid 19103] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_9506528-S	ILMN_285567	CYP2C	NM_019184.1	NM_019184.1		29277	9506528	NM_019184.1	Cyp2c	NP_062057.1	ILMN_1357969	0000540091	S	1429	CACCAGCTATCAGTGGATTTGGCCATTTGCCCCCTTTTTACGAGGCTTGT	1	+	243320518-243320567	1q53	Rattus norvegicus Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) (Cyp2c), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: testosterone + donor-H2 + O2 = 6-alpha-hydroxytestosterone + H2O [goid 8390] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	CYP2CII	CYP2CII
Rattus norvegicus	RefSeq	GI_47576486-S	ILMN_294846	OLR1610	NM_001000094.1	NM_001000094.1		290008	47576486	NM_001000094.1	Olr1610	NP_001000094.1	ILMN_1359512	0006130403	S	588	GCTCCTAATGGTGTTCAATAGTGGCCTGCTTACCCTCGTGTGCTTCCTTG	15	-	26006065-26006114	15p14	Rattus norvegicus olfactory receptor 1610 (Olr1610), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1610	Olr1610
Rattus norvegicus	RefSeq	GI_62647221-S	ILMN_56483	RGD1564109_PREDICTED	XM_575467.2	XM_575467.2		500115	109472021	XM_575467.2	RGD1564109_predicted	XP_575467.1	ILMN_1357597	0006900039	S	515	GAGGCCACCACACCCTTACAGGAGCTTTTCCTTCACACCACCGGCTTCTC	4	+	77063635-77063684	4q24	PREDICTED: Rattus norvegicus similar to diamine oxidase-like protein 2 (predicted) (RGD1564109_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663859-S	ILMN_50220	LOC502140	XM_577592.1	XM_577592.1		502140	62663859	XM_577592.1	LOC502140	XP_577592.1	ILMN_1353609	0001230341	S	1285	CCTGGACTAAAATCCATGAATTTGAGCGTATCAACATGTTCTGGGGCCTG					PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC502140), mRNA.					
Rattus norvegicus	RefSeq	GI_62664873-S	ILMN_267602	RGD1560685_PREDICTED	XM_001063748.1	XM_001063748.1		502191	109508437	XM_001063748.1	RGD1560685_predicted	XP_001063748.1	ILMN_1363955	0006550333	S	267	AAACCAGGGCTCAAGAGCTGGCCAAGGAAAGGCTGCCATCTTGAAGGCCC				19p11	PREDICTED: Rattus norvegicus similar to small nuclear ribonucleoprotein D3 (predicted) (RGD1560685_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646203-A	ILMN_301684	LBP	NM_017208.1	NM_017208.1		29469	8393699	NM_017208.1	Lbp	NP_058904.1	ILMN_1376661	0003130601	S	2502	AACGCTCATCGGACTGTTGTTCACGAGCCACATGCCTGCGAGGAGAGACC				3q42	Rattus norvegicus lipopolysaccharide binding protein (Lbp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2281] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; The directed movement of lipopolysaccharides into, out of, within or between cells. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide [goid 15920] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; The series of events in which a stimulus from a molecule of bacterial origin is received and converted into a molecular signal [goid 32490] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production [goid 32720] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-8 production [goid 32757] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of toll-like receptor 4 signaling pathway [goid 34145] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Any process that stimulates, induces or increases the rate of macrophage activation [goid 43032] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism [goid 50829] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Any process that increases the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 60265] [evidence ISS]	Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with any component on the surface of a Gram-negative bacterial cell [goid 51636] [evidence ISS]; Interacting selectively with any component on the surface of a Gram-positive bacterium [goid 51637] [evidence ISS]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	MGC124626	MGC124626
Rattus norvegicus	RefSeq	GI_56605845-S	ILMN_264096	DPEP3	NM_001008383.1	NM_001008383.1		364994	56605845	NM_001008383.1	Dpep3	NP_001008384.1	ILMN_1372995	0006770671	S	1441	ACACTTGAAGGTGACCAAGCTGCCAAGTAGCCAGGTGCTCCAGAGGGCCT	19	-	35815161-35815210	19q12	Rattus norvegicus dipeptidase 3 (Dpep3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94276	MGC94276
Rattus norvegicus	RefSeq	GI_62646327-S	ILMN_271083	RGD1307696_PREDICTED	XM_001070393.1	XM_001070393.1		311617	109471261	XM_001070393.1	RGD1307696_predicted	XP_001070393.1	ILMN_1358602	0001990600	S	1731	GACGCCATTTGTTCTTTGTTGGCAAATCCCCGGCCCTACACCTTGACATG				3q42	PREDICTED: Rattus norvegicus similar to dJ881L22.2 (novel protein) (predicted) (RGD1307696_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647296-A	ILMN_278591	RNF103	NM_053438.1	NM_053438.1		84508	16758179	NM_053438.1	Rnf103	NP_445890.1	ILMN_1376795	0007040204	S	2673	TCACCAGAATTGCATTGTTATGTGGTTGGCTGGGGGCCGACACTGTTGCC	4	+	104777585-104777634	4q33	Rattus norvegicus ring finger protein 103 (Rnf103), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Adrg34; Zfp103; Kf1	Adrg34; Zfp103; Kf1
Rattus norvegicus	RefSeq	GI_62649591-S	ILMN_263141	PPIE	XM_001054833.1	XM_001054833.1		298508	109477177	XM_001054833.1	Ppie	XP_001054833.1	ILMN_1350624	0000110152	S	823	TTGCGGCAGATTGAGGCGCAGGGCAGCAAGGACGGGAAACCAAAGCAGAA				5q36	PREDICTED: Rattus norvegicus peptidylprolyl isomerase E (cyclophilin E) (Ppie), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658366-S	ILMN_67605	LOC501798	XM_577207.1	XM_577207.1		501798	62658366	XM_577207.1	LOC501798	XP_577207.1	ILMN_1353218	0004560390	S	2457	CACGTGTACCTGGACACCTCAGACTTGGGAATGGAGGGATTTGGAGCACT					PREDICTED: Rattus norvegicus similar to dentin sialophosphoprotein preproprotein (LOC501798), mRNA.					
Rattus norvegicus	RefSeq	GI_62649555-S	ILMN_267869	PPCS	NM_001039010.1	NM_001039010.1		298490	84781647	NM_001039010.1	Ppcs	NP_001034099.1	ILMN_1352826	0001740019	S	1981	GTACTTATCGAGTGCCTACCCTTTGCCAGGGCCTTTGTGCGCTGTGAGGG	5	-	140008526-140008575	5q36	Rattus norvegicus phosphopantothenoylcysteine synthetase (Ppcs), mRNA.				MGC116383; RGD1311399	MGC116383; RGD1311399
Rattus norvegicus	RefSeq	GI_62645631-S	ILMN_68194	SPTBN5_PREDICTED	XM_238278.3	XM_238278.3		296090	62645631	XM_238278.3	Sptbn5_predicted	XP_238278.3	ILMN_1352460	0003440091	S	11132	GCTTCAGATGATGACAGAGGTTCAAGGGCTGGAGGAAGGGAGGTTGGCCC				3q35	PREDICTED: Rattus norvegicus spectrin, beta, non-erythrocytic 5 (predicted) (Sptbn5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424199-S	ILMN_290888	MRPL17	NM_133539.1	NM_133539.1		171061	19424199	NM_133539.1	Mrpl17	NP_598223.1	ILMN_1355642	0003130670	S	711	CCCTCGGATTTCTGGAACATAAGGAACATGCAGATGCTCAGCCTCCTACG	1	-	163555023-163555025:163555026-163555072	1q33	Rattus norvegicus mitochondrial ribosomal protein L17 (Mrpl17), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657171-S	ILMN_70225	FMNL1_PREDICTED	XM_213487.4	XM_213487.4		287746	109489132	XM_213487.4	Fmnl1_predicted	XP_213487.3	ILMN_1360809	0006590575	S	3056	CACCCAAGTCTCCTCCCAAGGCCAGGCGACAACAGATGGACCTCATCTCT	10	+	92382697-92382704:92382964-92383005	10q32.1	PREDICTED: Rattus norvegicus formin-like 1 (predicted) (Fmnl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981031	ILMN_58538	HMOX1	NM_012580.2	NM_012580.2		24451	61098187	NM_012580.2	Hmox1	NP_036712.1	ILMN_1650285	0000510722	S	924	CGATGGGTCCTCACACTCAGTTTCCTGTTGGCGACCGTGGCAGTGGGAAT	19	+	13969337-13969386	19p11	Rattus norvegicus heme oxygenase (decycling) 1 (Hmox1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The series of events that restore integrity to damaged tissue during or following an inflammatory response [goid 2246] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence TAS];  [goid 6788] [evidence TAS];  [goid 6788] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IDA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IDA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; A cascade of processes initiated by the detection of DNA damage and resulting in the induction of apoptosis (programmed cell death) [goid 8630] [evidence IDA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence IEP]; Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell cytokine production [goid 32764] [evidence IDA]; Any process of regulating the production and elimination of erythrocytes within an organism [goid 34101] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 42167] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 42167] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that stops, prevents, or reduces the rate of mast cell degranulation [goid 43305] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43392] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IDA]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51090] [evidence IDA]; The regulation of the levels, transport, and metabolism of iron ions [goid 55072] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence IDA]; Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence TAS]; Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence IEA]; Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate [goid 4630] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hmox; Ho-1; Ho1; Heox; hsp32; HEOXG	Hmox; Ho-1; Ho1; Heox; hsp32; HEOXG
Rattus norvegicus	RefSeq	GI_31342287-S	ILMN_55428	CSRP2	NM_177425.3	NM_177425.3		29317	78214351	NM_177425.3	Csrp2	NP_803174.2	ILMN_1351027	0002970097	S	669	TAATGTGGATGGCCTTACCGCACTCAGGCTGTGCATCGGCCAGCACTCAG	7	+	49929364-49929413	7q21	Rattus norvegicus cysteine and glycine-rich protein 2 (Csrp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEP]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	SmLIM	SmLIM
Rattus norvegicus	RefSeq	GI_34853283-S	ILMN_282621	RGD1562874_PREDICTED	XM_001077456.1	XM_001077456.1		366005	109469540	XM_001077456.1	RGD1562874_predicted	XP_001077456.1	ILMN_1354411	0002350095	S	672	GCTAGGGCTGGTAGTCATCTTCATGCCACTCATGTTCCTAGGGGTGCTCC				3p13	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434E1818.1 - human (fragment) (predicted) (RGD1562874_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644461-S	ILMN_277796	LOC499718	XM_001078222.1	XM_001078222.1		499718	109467709	XM_001078222.1	LOC499718	XP_001078222.1	ILMN_1362624	0004760592	S	5236	TTCGCCCAGTTGCACGGCAAGCCTGTCATCAGCATCACCTCACAGCCCTT				2q44	PREDICTED: Rattus norvegicus hypothetical LOC499718 (LOC499718), mRNA.					
Rattus norvegicus	RefSeq	GI_62657191-S	ILMN_288455	RGD1305423	XM_001066543.1	XM_001066543.1		303589	109489170	XM_001066543.1	RGD1305423	XP_001066543.1	ILMN_1351927	0004590066	S	5295	CCCGGAGACGGGAAGGAAAAGGAAACGGAAAAGTTCCAGAGGCTTTCGGC	10	+	94500751-94500800	10q32.1	PREDICTED: Rattus norvegicus similar to 4921510J17Rik protein (RGD1305423), mRNA.					
Rattus norvegicus	RefSeq	GI_58865391-A	ILMN_265034	LYAR	NM_001011911.1	NM_001011911.1		289707	58865391	NM_001011911.1	Lyar	NP_001011911.1	ILMN_1376637	0004010670	S	1308	GTGAGGGCTCTGTTGCGTCACACTCTACCATCCTATTGGCTACTTTCCTC	14	-	77859759-77859805:77859806-77859808	14q21	Rattus norvegicus Ly1 antibody reactive homolog (mouse) (Lyar), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639065-S	ILMN_265499	FKRP	NM_001025678.1	NM_001025678.1		308390	71043683	NM_001025678.1	Fkrp	NP_001020849.1	ILMN_1349988	0005900519	S	1274	GAGAAGGCGGTGGAGGGCGACTTCTTCCGAGTGCAGTACAGCGAGAGCAA	1	-	77135394-77135443	1q21	Rattus norvegicus fukutin related protein (Fkrp), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9101] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9101] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC116338	MGC116338
Rattus norvegicus	RefSeq	GI_62658042-S	ILMN_283327	HRASLS_PREDICTED	XM_001053962.1	XM_001053962.1		288025	109494590	XM_001053962.1	Hrasls_predicted	XP_001053962.1	ILMN_1354959	0006840451	S	1187	AGGATCTCGGAACGACAAAGCATTTGCAGCACCTGTGTGGGCAGAACCTG				11q22	PREDICTED: Rattus norvegicus HRAS-like suppressor (predicted) (Hrasls_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664998-S	ILMN_283042	ASNA1	XM_001066031.1	XM_001066031.1		288919	109508549	XM_001066031.1	Asna1	XP_001066031.1	ILMN_1365659	0000840435	S	1134	CCCCATAATGCAGGGGGAGCCACTTAGGAGGTGGGAGGGGGTCTGTTCCC				19q11	PREDICTED: Rattus norvegicus arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) (Asna1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47271543-S	ILMN_270617	FKBP1A	XM_001053006.1	XM_001053006.1		25639	109468735	XM_001053006.1	Fkbp1a	XP_001053006.1	ILMN_1356654	0002370494	S	1201	AACTGAAGGTGCTGTTTGTAGACTCACCACCCAGTGGATGCCCAGCCACC	3	+	141880500-141880549	3q41	PREDICTED: Rattus norvegicus FK506 binding protein 1a (Fkbp1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; Any process that stops or reduces the activity of the enzyme protein phosphatase type 2B [goid 32513] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the immunosuppressant FK506 [goid 5528] [evidence IDA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47578024-S	ILMN_263647	OLR1067	NM_001000697.1	NM_001000697.1		404903	47578024	NM_001000697.1	Olr1067	NP_001000697.1	ILMN_1350741	0000460577	S	572	CGTGTGTTGACACCTTTGTGAATGAGATTGTGCTGTTTAGTCTCTCTGCT	7	-	8222321-8222370	7q11	Rattus norvegicus olfactory receptor 1067 (Olr1067), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1067	Olr1067
Rattus norvegicus	RefSeq	GI_62644430-S	ILMN_272625	RGD1311728_PREDICTED	XR_009149.1	XR_009149.1		295449	109467656	XR_009149.1	RGD1311728_predicted		ILMN_1365111	0000510093	S	2147	GCCTTTCAAGCACGGAGCGACCATGAACTCAGCCTTCAGGAGTACCAGAG				2q43	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1311728_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642233-S	ILMN_54792	LOC499351	XM_574663.1	XM_574663.1		499351	62642233	XM_574663.1	LOC499351	XP_574663.1	ILMN_1370023	0000870324	S	186	GGGAAGGGCTCAGGTCCGCACAGCTGACTTTGCACTCTTTTGCAGATGCA					PREDICTED: Rattus norvegicus similar to FRA10AC1 protein isoform FRA10AC1-1 (LOC499351), mRNA.					
Rattus norvegicus	RefSeq	GI_62657914-S	ILMN_265413	CDGAP_PREDICTED	XM_001061135.1	XM_001061135.1		288093	109494331	XM_001061135.1	Cdgap_predicted	XP_001061135.1	ILMN_1373980	0002650605	S	4263	GGGGCAGTGCAGAAAGCGCACATCAGAGACAGAGCCATCAGAAGACAACC				11q21	PREDICTED: Rattus norvegicus Cdc42 GTPase-activating protein (predicted) (Cdgap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641773-S	ILMN_279076	GM963_PREDICTED	XM_001071115.1	XM_001071115.1		293686	109463398	XM_001071115.1	Gm963_predicted	XP_001071115.1	ILMN_1361187	0002370082	S	1747	TCCTGCTAGGAGATCCTGGTGCTGAACTCCATGCAAAGCCAGAGGACAGC				1q43	PREDICTED: Rattus norvegicus gene model 963, (NCBI) (predicted) (Gm963_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51854222-S	ILMN_290631	GK2	NM_001004077.1	NM_001004077.1		289481	51854222	NM_001004077.1	Gk2	NP_001004077.1	ILMN_1352566	0005690020	S	1348	CGGTAGTTAAATCTGTTATGCCCGAAACCACAGCCCTGGGAGCAGCCATG	14	+	13549264-13549313	14p22	Rattus norvegicus glycerol kinase 2 (Gk2), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol [goid 6072] [evidence IEA]	Catalysis of the reaction: ATP + glycerol = ADP + glycerol 3-phosphate [goid 4370] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94998	MGC94998
Rattus norvegicus	RefSeq	GI_62645167-S	ILMN_282786	RGD1560831_PREDICTED	XM_001057158.1	XM_001057158.1		499803	109470010	XM_001057158.1	RGD1560831_predicted	XP_001057158.1	ILMN_1366532	0001740341	S	764	CAGGGTCTTAGCAGCTGCATCTGGAGGCTGGATGTTGTCTTGTAAGTACG				3q21	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3 (predicted) (RGD1560831_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642136-S	ILMN_50603	LOC309300	XM_219819.3	XM_219819.3		309300	62642136	XM_219819.3	LOC309300	XP_219819.3	ILMN_1363609	0004060463	S	1379	TGGGCATCCGGAGAGCCAGGAACCGGTCCGTTGTAACTGCTGCTTTGGCA				1q52	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32871 (LOC309300), mRNA.					
Rattus norvegicus	RefSeq	GI_62664727-S	ILMN_57881	SOCS6_PREDICTED	XM_225667.4	XM_225667.4		307200	109506871	XM_225667.4	Socs6_predicted	XP_225667.4	ILMN_1374646	0003290398	S	1885	GAGTCATCGATTTGTTCAGGGGTGGGGAAGTGTCTGCAAGGTGTCCTGAG	18	-	85723402-85723451	18q13	PREDICTED: Rattus norvegicus suppressor of cytokine signaling 6 (predicted) (Socs6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54020667-S	ILMN_294509	SSRP1	NM_031121.1	NM_031121.1		81785	54020667	NM_031121.1	Ssrp1	NP_112383.1	ILMN_1375051	0006650706	S	2591	AGGAAAGCTCCATGCAATCTGGAAAGAGACTGGGTACTGGCAGCGCATCG	3	+	68282353-68282402	3q24	Rattus norvegicus structure specific recognition protein 1 (Ssrp1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence NAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence NAS]	MGC94298	MGC94298
Rattus norvegicus	RefSeq	GI_62643037-A	ILMN_298590	RAI14	NM_001011947.1	NM_001011947.1		294804	58865463	NM_001011947.1	Rai14	NP_001011947.1	ILMN_1376614	0007100450	S	2692	CTGAAGGAGGCCCTGAACAGCCTCTCGCAGCTCTCATACTCCACAAGCTC	2	-	59926409-59926458	2q16	Rattus norvegicus retinoic acid induced 14 (Rai14), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34932787-S	ILMN_263079	RHOX12	NM_001024901.1	NM_001024901.1		363437	67846079	NM_001024901.1	Rhox12	NP_001020072.1	ILMN_1354470	0003940504	S	423	AACTTGGCTTCTCCCACAATCCCACAGTTCCGGCGCACAAGGCCACGGAT	X	+	7238842-7238891	Xq11	Rattus norvegicus reproductive homeobox 12 (Rhox12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654541-S	ILMN_62241	EXOSC7	XM_236745.4	XM_236745.4		316098	109484123	XM_236745.4	Exosc7	XP_236745.2	ILMN_1368606	0002650161	S	866	CCAAGAGGCCAAAAGTCGGGTTCCTGGGGTGATTGTCTTCACTGTCCTGG	8	+	127893226-127893257:127893258-127893275	8q32	PREDICTED: Rattus norvegicus exosome component 7 (Exosc7), mRNA.		Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule [goid 175] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62079046-S	ILMN_283245	DBNDD1	NM_001014156.1	NM_001014156.1		361437	62079046	NM_001014156.1	Dbndd1	NP_001014178.1	ILMN_1372365	0006420731	S	1331	CATCCAACCTCAGTGGTGACTCCCAGATGGCTCGGAAGGACAGAGTGCCA	19	-	53825350-53825399	19q12	Rattus norvegicus dysbindin (dystrobrevin binding protein 1) domain containing 1 (Dbndd1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54262164-S	ILMN_285874	VAPB	NM_021847.2	NM_021847.2		60431	54262164	NM_021847.2	Vapb	NP_068619.1	ILMN_1366698	0003520600	S	1808	GGAGGGACGGACATTCTTTGTGATGACAGTCAGCTCTGGACTACCCAGCC	3	+	164670078-164670127	3q42	Rattus norvegicus vesicle-associated membrane protein, associated protein B and C (Vapb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Interactions, directly with the host cell macromolecular machinery, to allow virus replication [goid 19048] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of viral genome replication [goid 45070] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of viral genome replication [goid 45070] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	MGC72459	MGC72459
Rattus norvegicus	RefSeq	GI_31542603-S	ILMN_297230	ERC1	NM_170788.2	NM_170788.2		266806	31542603	NM_170788.2	Erc1	NP_740769.2	ILMN_1374688	0006290056	S	3369	CGCCAACACCATTCTCCAGCAGATAGCTGATCACTGCCCTGACATCCTCG	4	-	155931379-155931428	4q42	Rattus norvegicus ELKS/RAB6-interacting/CAST family member 1 (Erc1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A protein serine/threonine kinase that phosphorylates IkappaB, thereby targeting this for proteasomal degradation and allowing the nuclear translocation of kB. Composed of alpha, beta and gamma subunits, the latter not having kinase activity but presumed to play a regulatory role [goid 8385] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IDA]	Cast2; ERC1b; Elks; ERC; CAST	Cast2; ERC1b; Elks; ERC; CAST
Rattus norvegicus	RefSeq	GI_62648116	ILMN_53054	RGD1560851_PREDICTED	XM_342749.3	XM_342749.3		362428	109472533	XM_342749.3	RGD1560851_predicted	XP_342750.3	ILMN_1650590	0003710129	S	1162	CATGAGCGCCAGTTCCAGCTCTGTTGATAGCGACCCTGAAAGCACCACCG	4	-	158905469-158905518	4q42	PREDICTED: Rattus norvegicus similar to mKIAA1238 protein (predicted) (RGD1560851_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651935-S	ILMN_66966	HMHA1_PREDICTED	XM_234898.4	XM_234898.4		314618	109480215	XM_234898.4	Hmha1_predicted	XP_234898.4	ILMN_1356266	0001450332	S	3243	CACCAACCAGTCCAACAACACCACACAAGCCTCTCTGCCCACCATGCGAC	7	-	11187841-11187890	7q11	PREDICTED: Rattus norvegicus histocompatibility (minor) HA-1 (predicted) (Hmha1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653084-S	ILMN_56217	LOC500934	XM_580136.1	XM_580136.1		500934	62653084	XM_580136.1	LOC500934	XP_580136.1	ILMN_1374915	0004150022	S	504	CCTGATGTGGCGCGGGAGCTGGCCAAGAACCTCCATCAGCAAGCGACGTT					PREDICTED: Rattus norvegicus LOC500934 (LOC500934), mRNA.					
Rattus norvegicus	RefSeq	GI_62648017-S	ILMN_48375	LOC500289	XM_580054.1	XM_580054.1		500289	62648017	XM_580054.1	LOC500289	XP_580054.1	ILMN_1358178	0001940121	S	931	GTTACAGGGGTTGTGACCCACCATGTGGCTGAAGTGAATTGAACCCAGCT					PREDICTED: Rattus norvegicus LOC500289 (LOC500289), mRNA.					
Rattus norvegicus	RefSeq	GI_27709531-S	ILMN_289171	RGD1563104_PREDICTED	XM_001065969.1	XM_001065969.1		302773	109512280	XM_001065969.1	RGD1563104_predicted	XP_001065969.1	ILMN_1368012	0000780092	S	3829	CAGCTGCTGCAAACCATGAATCTCAGCAAGAAGAAGCTAAGAGTATGTCC				Xq33	PREDICTED: Rattus norvegicus similar to Vigilin (High density lipoprotein-binding protein) (predicted) (RGD1563104_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667431-S	ILMN_62362	LOC363506	XM_343830.2	XM_343830.2		363506	62667431	XM_343830.2	LOC363506	XP_343831.2	ILMN_1361836	0006660446	S	69	GAACAGCCTCAAGGTAATCTGGTAACCCACACCCCCACTCGAGGAGACTC					PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 48 (LOC363506), mRNA.					
Rattus norvegicus	RefSeq	GI_62655589-S	ILMN_60626	LOC497853	XM_573034.1	XM_573034.1		497853	62655589	XM_573034.1	LOC497853	XP_573034.1	ILMN_1367604	0002810706	S	1333	ATCCCCTTTCTGTATTGCAGGTTGGTATTGTGGGTCGTACAGGAGCTGGG					PREDICTED: Rattus norvegicus similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (LOC497853), mRNA.					
Rattus norvegicus	RefSeq	GI_62638842-S	ILMN_287078	RGD1559613_PREDICTED	XM_001068894.1	XM_001068894.1		499067	109461089	XM_001068894.1	RGD1559613_predicted	XP_001068894.1	ILMN_1369473	0000110397	S	328	GATGAGGAGTCAGAGGATTCTCAGGGCTTTGTGGAGTGGTCCAAGGCTCC				1q12	PREDICTED: Rattus norvegicus RGD1559613 (predicted) (RGD1559613_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578066-S	ILMN_290237	OLR1006	NM_001000075.1	NM_001000075.1		288886	47578066	NM_001000075.1	Olr1006	NP_001000075.1	ILMN_1352890	0004280487	S	444	GGCAGCATTCATGATTATCCTTCCTCCACTTAGTTTGGGTTTTCACCTGG	7	-	6592630-6592679	7q11	Rattus norvegicus olfactory receptor 1006 (Olr1006), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-6593123-6592173_ORF; Olr1006	ratchr7-6593123-6592173_ORF; Olr1006
Rattus norvegicus	RefSeq	GI_16758563-S	ILMN_273569	ARHGEF7	NM_053740.1	NM_053740.1		114559	16758563	NM_053740.1	Arhgef7	NP_446192.1	ILMN_1356216	0006450537	S	1510	AAGCTGCTGCCAAAACGCAAGCCCGAGCGCAAGCCTTCAGACGAGGAGTT	16	-	82536751-82536800	16q12.5	Rattus norvegicus Rho guanine nucleotide exchange factor 7 (Arhgef7), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IDA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence TAS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]	Pak3bp; P85spr	Pak3bp; P85spr
Rattus norvegicus	RefSeq	GI_62666060	ILMN_56252	TAF9_PREDICTED	XM_215465.3	XM_215465.3		294694	62666060	XM_215465.3	Taf9_predicted	XP_215465.3	ILMN_1650864	0003290035	S	174	TGAGGACAGGGTTGTGGATGAGTTAGAGCCTCAGATGACAGAGGGCGGCG				20p11	PREDICTED: Rattus norvegicus TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638732-S	ILMN_63892	LOC365139	XM_344835.2	XM_344835.2		365139	62638732	XM_344835.2	LOC365139	XP_344836.2	ILMN_1374748	0003830068	S	6	GGGAAGGACTCTGAGACCGTGGCTTCTATGGGCTATGGAAAGACTTTAGG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365139), mRNA.					
Rattus norvegicus	RefSeq	GI_27671154-S	ILMN_281566	RGD1566186_PREDICTED	XM_001070155.1	XM_001070155.1		288313	109493928	XM_001070155.1	RGD1566186_predicted	XP_001070155.1	ILMN_1356364	0001190288	S	164	AGGAAACACAGGCCAACAATGCAAAGGCAGTGAGTAGATGCACAGAGGCC				11q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1566186_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652820-I	ILMN_65508	NAGA_PREDICTED	XM_576317.1	XM_576317.1		315165	62652820	XM_576317.1	Naga_predicted	XP_576317.1	ILMN_1376043	0005720070	S	955	GCTTCCAGGGCTTAAGCGCACAGCGGACTGAGCGAGTACGAGGTTCAACA				7q34	PREDICTED: Rattus norvegicus N-acetyl galactosaminidase, alpha (predicted) (Naga_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42475960-S	ILMN_265628	ALAD	NM_012899.2	NM_012899.2		25374	42475960	NM_012899.2	Alad	NP_037031.1	ILMN_1361919	0003990465	S	934	TACCTGGATATGGTGCAGGAGGTGAAGGACAAGCACCCCGAGCTCCCCCT	5	-	79506693-79506710:79507001-79507032	5q24	Rattus norvegicus aminolevulinate, delta-, dehydratase (Alad), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IDA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 2 5-aminolevulinate = porphobilinogen + 2 H2O [goid 4655] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ALADR; aminolevulinatedelta-dehydratase	ALADR; aminolevulinatedelta-dehydratase
Rattus norvegicus	RefSeq	GI_27680289-S	ILMN_289135	RGD1560186_PREDICTED	XM_223076.1	XM_223076.1		289384	27680289	XM_223076.1	RGD1560186_predicted	XP_223076.1	ILMN_1358854	0004810471	S	184	GGTCGGATGAGGCACCTAAAGATTGTCAGACATGGATTCCGTGAAGGAAC	13	+	107757551-107757600	13q27	PREDICTED: Rattus norvegicus similar to ribosomal protein L37 (predicted) (RGD1560186_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655874-S	ILMN_295969	LOC682159	XM_001060179.1	XM_001060179.1		682159	109490379	XM_001060179.1	LOC682159	XP_001060179.1	ILMN_1373874	0002260253	S	490	CAGTGGGCAGGAGTGAGGTGTGGTTCCGGTTCAACGAGGGTGTCTCCAAT					PREDICTED: Rattus norvegicus similar to guanine nucleotide binding protein 13, gamma (LOC682159), mRNA.					
Rattus norvegicus	RefSeq	GI_62663106-S	ILMN_57877	LOC364657	XM_344561.2	XM_344561.2		364657	62663106	XM_344561.2	LOC364657	XP_344562.2	ILMN_1369916	0006290039	S	3593	TACGAATTGCTCTGTGTCGCTTGGAGGCAGGGACTACGAGCCTCTGAGGA					PREDICTED: Rattus norvegicus similar to Irx2 protein (LOC364657), mRNA.					
Rattus norvegicus	RefSeq	GI_13591952-S	ILMN_295962	GNA12	NM_031034.1	NM_031034.1		81663	13591952	NM_031034.1	Gna12	NP_112296.1	ILMN_1352707	0002760605	S	1347	CACACCAGCGAGCTGCGGGCAAGAGGATGGGAGTGTCAGTGATAGCTACT	12	+	14354796-14354843	12q11	Rattus norvegicus guanine nucleotide binding protein, alpha 12 (Gna12), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence TAS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IPI]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Interacting selectively with a dopamine receptor [goid 50780] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62718453-S	ILMN_60890	LOC501400	XM_576813.1	XM_576813.1		501400	62718453	XM_576813.1	LOC501400	XP_576813.1	ILMN_1365907	0005570739	S	1429	TGGATGTATTCTGGTGAATAAAGTAGTAATCTCAAACTCTTCACTCTTAA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC501400), mRNA.					
Rattus norvegicus	RefSeq	GI_17738290-S	ILMN_66843	SLC25A1	NM_017307.3	NM_017307.3		29743	76881820	NM_017307.3	Slc25a1	NP_059003.1	ILMN_1372631	0004560068	S	1577	GGAACAGGGTGGCACCAGCCACTCTCAGGACCACCTTGCCAAGGAGAATA	11	+	85046853-85046902	11q23	Rattus norvegicus solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 (Slc25a1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, into, out of or within a mitochondrion [goid 6843] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, from one side of the membrane to the other [goid 15137] [evidence TAS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC93247; Slc20a3; Ctp; Cic	MGC93247; Slc20a3; Ctp; Cic
Rattus norvegicus	RefSeq	GI_47577394-S	ILMN_295304	OLR446	NM_001001050.1	NM_001001050.1		405937	47577394	NM_001001050.1	Olr446	NP_001001050.1	ILMN_1368935	0005670369	S	396	TACTCTCCTCATGTCTCAGAGGGTATGTGTGCATCTGGTTGTAGGGCCAT	3	+	68846968-68847017	3q24	Rattus norvegicus olfactory receptor 446 (Olr446), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr446	Olr446
Rattus norvegicus	RefSeq	GI_62717797-S	ILMN_48620	LOC501224	XM_576647.1	XM_576647.1		501224	62717797	XM_576647.1	LOC501224	XP_576647.1	ILMN_1368588	0002470088	S	1119	GTCTCCAAGGCAAGCCATAGGCTATAAGTCTATTCTGCAAAAGGAGCAGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC501224), mRNA.					
Rattus norvegicus	RefSeq	GI_34876782-S	ILMN_278898	RGD1562394_PREDICTED	XM_001081708.1	XM_001081708.1		364129	109519174	XM_001081708.1	RGD1562394_predicted	XP_001081708.1	ILMN_1360530	0003840347	S	205	AGTGACCATCACTACAGTGGCAATAATATTGCATTGGGCACAGCATGTGG				14p21	PREDICTED: Rattus norvegicus similar to ribosomal protein L30 (predicted) (RGD1562394_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645175-S	ILMN_284404	RGD1561599_PREDICTED	XM_001058317.1	XM_001058317.1		366065	109470028	XM_001058317.1	RGD1561599_predicted	XP_001058317.1	ILMN_1368895	0003130373	S	882	CCGGTTCTTGAAACAGACCCCTTGGTTGTGGAATACAAGGCACTGCTGGT				3q21	PREDICTED: Rattus norvegicus similar to longevity assurance homolog 6 (predicted) (RGD1561599_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742831-S	ILMN_283566	ANXA4	NM_024155.3	NM_024155.3		79124	55742831	NM_024155.3	Anxa4	NP_077069.3	ILMN_1349705	0000780487	S	1741	GAGTGGACTCGGCCAAGGTTGTCCTGGTAATGAGATGCTCTGGGTGTGGC	4	-	120889784-120889833	4q34	Rattus norvegicus annexin A4 (Anxa4), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence NAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]	MGC93088; Anx4	MGC93088; Anx4
Rattus norvegicus	RefSeq	GI_62639380-S	ILMN_52347	CD22_PREDICTED	XM_218523.4	XM_218523.4		308501	109458539	XM_218523.4	Cd22_predicted	XP_218523.4	ILMN_1357824	0004610524	S	2682	AGGTGCAAGGAGCCCAGCAACACAGGGTCCTCCTCCAAACGACGATGACA	1	-	85925308-85925357	1q21	PREDICTED: Rattus norvegicus CD22 antigen (predicted) (Cd22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662786-S	ILMN_69970	LOC497708	XM_579483.1	XM_579483.1		497708	62662786	XM_579483.1	LOC497708	XP_579483.1	ILMN_2038865	0002000138	S	2319	GGACCAGTACTCGCCAAGCTTTCCGGACACACGGAGCTCTACCTGCTCTT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_024146 (LOC497708), mRNA.					
Rattus norvegicus	RefSeq	GI_62661394-S	ILMN_62432	LOC498504	XM_573768.1	XM_573768.1		498504	62661394	XM_573768.1	LOC498504	XP_573768.1	ILMN_1370008	0003780288	S	651	CCTGCTCACCGCATCCTTCTTGCAGTTGGCTCAGTATTTAGCAAAGGCAA				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain - mouse (LOC498504), mRNA.					
Rattus norvegicus	RefSeq	GI_40018605-S	ILMN_266909	GAA	NM_199118.1	NM_199118.1		367562	40018605	NM_199118.1	Gaa	NP_954549.1	ILMN_1371513	0002060739	S	3029	CTAGGAGACTTTACAGAGGCCCCCCTAGAGGCCATGCGAGTTTGAGCTCG					Rattus norvegicus glucosidase, alpha, acid (Gaa), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; A process whereby force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. This process occurs in the diaphragm. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The diaphragm is a striated muscle that is necessary for the process of respiratory gaseous exchange [goid 2086] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IDA]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process of transporting a substance into, and confining within, a vacuole [goid 43181] [evidence ISS]; The process by which the anatomical structures of the tongue are generated and organized. Morphogenesis pertains to the creation of form. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43587] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose [goid 4558] [evidence ISS]; Catalysis of the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose [goid 4558] [evidence IDA]; Catalysis of the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose [goid 4558] [evidence IMP]; Catalysis of the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose [goid 4558] [evidence IDA]; Catalysis of the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose [goid 4558] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]	MGC72625	MGC72625
Rattus norvegicus	RefSeq	GI_62650549-S	ILMN_278305	RBJ	XM_001070274.1	XM_001070274.1		298859	109479093	XM_001070274.1	Rbj	XP_001070274.1	ILMN_1355125	0000730139	S	959	GACTAGTAAGGACAGCTGGGAGATGCTGGGAGTCAGACCTGGGGCCTCAA				6q14	PREDICTED: Rattus norvegicus RBJ protein (Rbj), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981485-S	ILMN_272978	RPN1	NM_013067.1	NM_013067.1		25596	6981485	NM_013067.1	Rpn1	NP_037199.1	ILMN_1354402	0002680168	S	1844	GGCCTGGGTGGCCTACACTTCTGGATGGAATAGGTAGAGGGAGGAAGTTG	4|NW_047706.1	-	67750-67799		Rattus norvegicus ribophorin I (Rpn1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Vesicular particles formed from disrupted endoplasmic reticulum membranes and studded with ribosomes on the outside [goid 19718] [evidence IDA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IPI]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15833] [evidence NAS]	Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine [goid 4579] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RIBI	RIBI
Rattus norvegicus	RefSeq	GI_62645963-S	ILMN_283259	POLR3F_PREDICTED	XM_001054408.1	XM_001054408.1		311487	109470928	XM_001054408.1	Polr3f_predicted	XP_001054408.1	ILMN_1360614	0001240576	S	1536	GATGGGAGTGTGTGTGCCAGCTCGGGCCTGGGTTGTAAAGTGGGTATTTC				3q41	PREDICTED: Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide F (predicted) (Polr3f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21489992-S	ILMN_288968	AARD	NM_145093.1	NM_145093.1		246323	21489992	NM_145093.1	Aard	NP_659561.1	ILMN_1360232	0005700408	S	990	TGTGACCAGCATGAAGGGTGTCTCACATGTATGCCAGGGCTTGCTGTTGA	7	+	88350766-88350815	7q31	Rattus norvegicus alanine and arginine rich domain containing protein (Aard), mRNA.		The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEP]		A5D3	A5D3
Rattus norvegicus	RefSeq	GI_62660067	ILMN_67778	RGD1564998_PREDICTED	XM_573547.2	XM_573547.2		498323	109499429	XM_573547.2	RGD1564998_predicted	XP_573547.2	ILMN_1650948	0004670044	S	651	CCAACATCCTGAATGAAAACAGCACTTGAAAGACAACTTGGGGGACCGCC	14	-	4549619-4549654:4549773-4549786	14p22	PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (predicted) (RGD1564998_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758833-S	ILMN_282113	NUP155	NM_053952.1	NM_053952.1		117021	16758833	NM_053952.1	Nup155	NP_446404.1	ILMN_1357199	0002190372	S	4138	GCCGTCTGTGGTTATCTGGTTGAACTTCAGTCAATGAGCTCTTCGGTGGC	2	+	57762804-57762853	2q16	Rattus norvegicus nucleoporin 155 (Nup155), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the nuclear pore complex [goid 17056] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642061-S	ILMN_49253	DMRT2_PREDICTED	XM_219927.4	XM_219927.4		309430	109459984	XM_219927.4	Dmrt2_predicted	XP_219927.4	ILMN_1364718	0002850484	S	1688	CCCCCATTGTTGATATGGACTGTCTGGCAGCTCAAGGGCACGTCTTAACC	1	+	229119912-229119961	1q51	PREDICTED: Rattus norvegicus doublesex and mab-3 related transcription factor 2 (predicted) (Dmrt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078508-S	ILMN_294877	DNAJC18	NM_001013887.1	NM_001013887.1		291677	62078508	NM_001013887.1	Dnajc18	NP_001013909.1	ILMN_1364524	0005890056	S	1311	CGGCTGAGAGCTTGATGGCCCTGCTCACAATGGGGGTTCCTACCCATACT				18p11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 18 (Dnajc18), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process by which a methyl group is covalently attached to a molecule [goid 32259] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	RGD1310237	RGD1310237
Rattus norvegicus	RefSeq	GI_62647694-S	ILMN_55927	LOC500231	XM_575582.1	XM_575582.1		500231	62647694	XM_575582.1	LOC500231	XP_575582.1	ILMN_1361473	0005720056	S	28	CCCTGCATGGGAATCCTTCAAAAGGCGACAGGAAGCATCTAGGTCCAGAG				4q34	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (LOC500231), mRNA.					
Rattus norvegicus	RefSeq	GI_62653356-S	ILMN_48800	LOC315496	XM_235970.3	XM_235970.3		315496	62653356	XM_235970.3	LOC315496	XP_235970.3	ILMN_1358379	0002690600	S	2396	CTCAGAAAACGGGAGCGGCTGGAGGTCATGGTTTAGGAGTGCTTGAGCGA				8q13	PREDICTED: Rattus norvegicus similar to KIAA0877 protein (predicted) (LOC315496), mRNA.					
Rattus norvegicus	RefSeq	GI_62661830-A	ILMN_299710	SPRY2	NM_001012046.1	NM_001012046.1		306141	58865659	NM_001012046.1	Spry2	NP_001012046.1	ILMN_1376572	0002450128	S	1399	CGCCAGGGAAAGGCGACAGAAGTTGGTGGCCCCACGTTATTGCATAAGCT	15	-	90009474-90009523	15q22	Rattus norvegicus sprouty homolog 2 (Drosophila) (Spry2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718508-S	ILMN_65235	LOC501407	XM_576819.1	XM_576819.1		501407	62718508	XM_576819.1	LOC501407	XP_576819.1	ILMN_1358334	0000840288	S	406	ACTCTTCTCGCAAATCACCTATTATGAAAGAATTCCTAGCTGGCCTCAAC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501407), mRNA.					
Rattus norvegicus	RefSeq	GI_62655114-S	ILMN_66706	RGD1562399_PREDICTED	XM_217412.4	XM_217412.4		301438	109486115	XM_217412.4	RGD1562399_predicted	XP_217412.3	ILMN_1373349	0004200114	S	481	AAGGGGCCATCATCCTAGCCAAGCTTTCTCCAGTGCGGAGAGGCTACTGG	9	+	57828994-57829043	9q31	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (predicted) (RGD1562399_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24308517-S	ILMN_297357	SCLT1	NM_153740.1	NM_153740.1		266809	24308517	NM_153740.1	Sclt1	NP_714962.1	ILMN_1351037	0004920164	S	1956	AAGGCGTTTAAGTCAGGCAGAAGAGAGAGCTGCTTCAGCGTCCCAGCAGC	2	-	128562655-128562656:128564674-128564721	2q26	Rattus norvegicus sodium channel and clathrin linker 1 (Sclt1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process by which voltage-gated sodium channels become localized together in high densities. In animals, nodes of Ranvier differ dramatically from internodal axonal regions in very high densities of voltage-dependent sodium (Nav) channels responsible for the rapid, inward ionic currents that produce membrane depolarization [goid 45162] [evidence IMP]	 [goid 17080] [evidence IMP]	CAP-1A	CAP-1A
Rattus norvegicus	RefSeq	GI_19173767-S	ILMN_266438	CRY2	NM_133405.1	NM_133405.1		170917	19173767	NM_133405.1	Cry2	NP_596896.1	ILMN_1351530	0000780458	S	2054	AAGACTAGAACCCGCAGCAGTAACCGTCAGCCCAAATCTGCCCCTGGGAG	3	-	76802807-76802856	3q24	Rattus norvegicus cryptochrome 2 (photolyase-like) (Cry2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA [goid 3913] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation [goid 9881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34869643-S	ILMN_48134	CNIH_PREDICTED	XM_214153.3	XM_214153.3		289994	109501521	XM_214153.3	Cnih_predicted	XP_214153.3	ILMN_1356281	0000380161	S	1496	AACGAATGAGAGAACTGTGTAACCGCCCCGCTGTTCCTTCAGTGCAACAC	15	-	22632796-22632845	15p14	PREDICTED: Rattus norvegicus cornichon homolog (Drosophila) (predicted) (Cnih_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666246-S	ILMN_64931	LOC502471	XM_580249.1	XM_580249.1		502471	62666246	XM_580249.1	LOC502471	XP_580249.1	ILMN_2040287	0006450386	S	187	ATAGCAGGCTTTGCTACCAGGGAGCAGCTGTGTGAGAGGATAGGTTTGCC					PREDICTED: Rattus norvegicus LOC502471 (LOC502471), mRNA.					
Rattus norvegicus	RefSeq	GI_62649164-S	ILMN_60706	SH3GL2	XM_342857.2	XM_342857.2		116743	62649164	XM_342857.2	Sh3gl2	XP_342858.2	ILMN_1372352	0004670079	S	1710	GGTGTAGGTCAACACAACGGCATAAGGATCTTCACTGGGAGACACTTTGC				5q31	PREDICTED: Rattus norvegicus SH3 domain protein 2A (Sh3gl2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56090314-S	ILMN_290419	MORF4L2	NM_001007714.1	NM_001007714.1		317413	56090314	NM_001007714.1	Morf4l2	NP_001007715.1	ILMN_1365801	0000510463	S	1468	GCTACGTGATGAGATGCCCTGGTTCCTAGTGCCAAAGGTTCAACTTACTG	X	-	124383118-124383167	Xq35	Rattus norvegicus mortality factor 4 like 2 (Morf4l2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of striated muscle cell differentiation [goid 51155] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	LRRG00119; MGC93688; MGC94357	LRRG00119; MGC93688; MGC94357
Rattus norvegicus	RefSeq	GI_62651673-S	ILMN_53754	ANKRD24_PREDICTED	XM_216841.4	XM_216841.4		299639	109480184	XM_216841.4	Ankrd24_predicted	XP_216841.4	ILMN_1372716	0004070575	S	3240	CCATTTTGTGTGTGCGTGTACAGTGGGTGGGGACAGGCATAACCAGTGGC	7	-	9534464-9534513	7q11	PREDICTED: Rattus norvegicus ankyrin repeat domain 24 (predicted) (Ankrd24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078718-S	ILMN_299854	RGD1305288	NM_001013995.1	NM_001013995.1		305882	62078718	NM_001013995.1	RGD1305288	NP_001014017.1	ILMN_1352509	0004850133	S	1325	GGACCACCTCCACCACAGGGGAATATGGGGACACTTGCTTAAAACACTGC	15	-	32601062-32601111	15p13	Rattus norvegicus similar to chromosome 14 open reading frame 94 (RGD1305288), mRNA.					
Rattus norvegicus	RefSeq	GI_58219536-S	ILMN_266062	NAAA	NM_001010967.2	NM_001010967.2		497009	77736613	NM_001010967.2	Naaa	NP_001010967.1	ILMN_1357883	0000430050	S	837	GCGGACATTTGGCCTCTTGACCCTCTGAATGGAGCGTGGTTCCGAGTCGA	14	+	17353162-17353196:17353306-17353320	14p22	Rattus norvegicus N-acylethanolamine acid amidase (Naaa), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Naaa; MGC124515	Naaa; MGC124515
Rattus norvegicus	RefSeq	GI_9507118-S	ILMN_274784	SLC22A5	NM_019269.1	NM_019269.1		29726	9507118	NM_019269.1	Slc22a5	NP_062142.1	ILMN_1372579	0001240603	S	2872	CTCTTCTGATTATGTTGCCATGGTGCTCCGAAAGCACACGCTTCACGCTC	10	-	39311830-39311879	10q22	Rattus norvegicus solute carrier family 22 (organic cation/carnitine transporter), member 5 (Slc22a5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 9437] [evidence ISS]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IMP]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence ISS]; The directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15879] [evidence IDA]; The directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15879] [evidence IMP]; The directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15879] [evidence ISS]; The directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15879] [evidence IDA]; The directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15879] [evidence ISS]; The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells [goid 42891] [evidence IMP]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]; Enables the directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15226] [evidence IDA]; Enables the directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15226] [evidence IMP]; Enables the directed movement of carnitine into, out of, within or between cells. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 15226] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IMP]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells [goid 42895] [evidence IMP]	OCTN2; CT1; UST2r	OCTN2; CT1; UST2r
Rattus norvegicus	RefSeq	GI_31377526-S	ILMN_266502	PTGES	NM_021583.2	NM_021583.2		59103	31377526	NM_021583.2	Ptges	NP_067594.1	ILMN_1353392	0003440440	S	928	TCCCAGTGGAAGTAGGGTGCCATGTTTTCAGAGGAGGGCAGGTCAGAGCT	3	-	9946472-9946521	3p12	Rattus norvegicus prostaglandin E synthase (Ptges), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence TAS]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IDA]; Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence IEP]; Inflammation of prolonged duration (weeks or months) in which active inflammation, tissue destruction, and attempts at repair are proceeding simultaneously. Although it may follow acute inflammation, chronic inflammation frequently begins insidiously, as a low-grade, smoldering, often asymptomatic response [goid 2544] [evidence IEP]; The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprosta-5,13-dienoate [goid 50220] [evidence IDA]	Pges; MGC124930	Pges; MGC124930
Rattus norvegicus	RefSeq	GI_11560090-S	ILMN_297781	LOC64038	NM_022271.1	NM_022271.1		64038	11560090	NM_022271.1	LOC64038	NP_071607.1	ILMN_1363476	0002480603	S	485	GGAGCTGTTCAGGGTCGTTTGATGTGTCTCGGGCAAACAAGAGCACAGAG	2	+	79432381-79432402:79432403-79432430	2q22	Rattus norvegicus sertolin (LOC64038), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]			
Rattus norvegicus	RefSeq	GI_62658820-S	ILMN_265879	LOC689484	XM_001070964.1	XM_001070964.1		689484	109495837	XM_001070964.1	LOC689484	XP_001070964.1	ILMN_1374584	0006220632	S	803	GGACAGGAGAGCCAAATTGAAAGCCGACCGATATTGCAAGTGACGTGGAC	12	-	31330412-31330419:31330420-31330461	12q14	PREDICTED: Rattus norvegicus similar to FRG1 protein (FSHD region gene 1 protein) (LOC689484), mRNA.					
Rattus norvegicus	RefSeq	GI_47576706-S	ILMN_264372	OLR848_PREDICTED	XM_001052966.1	XM_001052966.1		298044	109514838	XM_001052966.1	Olr848_predicted	XP_001052966.1	ILMN_1359268	0000070184	S	462	CAACTCAGTTGTGCAAACATCCCTTGTCATGAGGTTGCCTTTCTGTGGGA				5q24	PREDICTED: Rattus norvegicus olfactory receptor 848 (predicted) (Olr848_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394388-S	ILMN_276634	SYN3	NM_017109.1	NM_017109.1		29130	8394388	NM_017109.1	Syn3	NP_058805.1	ILMN_1352009	0003610341	S	2131	AGACAGACAAGGCATCACTACATCCACCATACGCTTGCTCCCTGCCGCCG	7	+	19940722-19940771	7q13	Rattus norvegicus synapsin III (Syn3), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence TAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666196-S	ILMN_62716	RGD1563833_PREDICTED	XM_577929.2	XM_577929.2		502448	109509541	XM_577929.2	RGD1563833_predicted	XP_577929.2	ILMN_1365401	0004480711	S	215	GAGTGGTGAGTCACGGCCTAAAGCGGTCCATCAGAGGCTCCATTCCGCTG	20	+	38095215-38095264	20q12	PREDICTED: Rattus norvegicus similar to putative homeobox protein (predicted) (RGD1563833_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527149-S	ILMN_269222	ZFP414	NM_001009664.1	NM_001009664.1		299647	57527149	NM_001009664.1	Zfp414	NP_001009664.1	ILMN_1360426	0006370079	S	1038	TTCCTGTGCCCTAAGTGGGCCCTGTGAATGCTGGAAAGCAGCGGTGACTG	7	+	16134146-16134195	7q12	Rattus norvegicus zinc finger protein 414 (Zfp414), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zfp414; MGC105571	Zfp414; MGC105571
Rattus norvegicus	RefSeq	GI_34862801-S	ILMN_60081	ABHD9_PREDICTED	XM_345799.2	XM_345799.2		366836	109480296	XM_345799.2	Abhd9_predicted	XP_345800.1	ILMN_1368175	0004480452	S	946	CCCACGCCTGAGTCCTTGTGAACTTGAAGCGTTCCTTTATCCCTTCTCCC	7	-	12763500-12763549	7q11	PREDICTED: Rattus norvegicus abhydrolase domain containing 9 (predicted) (Abhd9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652329-S	ILMN_63925	LOC500855	XM_576251.1	XM_576251.1		500855	62652329	XM_576251.1	LOC500855	XP_576251.1	ILMN_1360128	0006350056	S	2996	CCATTCTCACCCCCATGTTTAGCTGACACACTTGGGACCTCACTGTGCTG				7q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110006P09 (LOC500855), mRNA.					
Rattus norvegicus	RefSeq	GI_62718752-S	ILMN_286460	IRX1_PREDICTED	XM_001057410.1	XM_001057410.1		306659	109460626	XM_001057410.1	Irx1_predicted	XP_001057410.1	ILMN_1354024	0002450154	S	1736	GAGGGAAGAATTAAGACAAATATTTGAGACTTGTGTAAAGGACAAACGTG				17p14	PREDICTED: Rattus norvegicus Iroquois related homeobox 1 (Drosophila) (predicted), transcript variant 2 (Irx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663080-S	ILMN_286460	IRX1_PREDICTED	XM_001057410.1	XM_001057410.1		306659	109460626	XM_001057410.1	Irx1_predicted	XP_001057410.1	ILMN_1373100	0002230538	S	1334	CAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGCACAGGGCTCGCTGT				17p14	PREDICTED: Rattus norvegicus Iroquois related homeobox 1 (Drosophila) (predicted), transcript variant 2 (Irx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645377-S	ILMN_55834	MTCH2_PREDICTED	XM_215769.4	XM_215769.4		295922	109468416	XM_215769.4	Mtch2_predicted	XP_215769.3	ILMN_1375089	0002940673	S	2478	TCTGTCAATGCAGCAGAGGCCATGATGTTAGGTAGTGTGAGCGAGCAGGG	3	+	75230018-75230067	3q24	PREDICTED: Rattus norvegicus mitochondrial carrier homolog 2 (C. elegans) (predicted) (Mtch2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663149-S	ILMN_269773	RGD1565540_PREDICTED	XM_001065725.1	XM_001065725.1		498690	109505385	XM_001065725.1	RGD1565540_predicted	XP_001065725.1	ILMN_1367600	0002100435	S	551	CCCGATGTGAGAGGATGATGTCGGAGAGGTTCAACAGCAGGAGGTAGCCC				17p14	PREDICTED: Rattus norvegicus similar to ctla-2-beta protein (141 AA) (predicted) (RGD1565540_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638669-S	ILMN_61053	LOC308222	XM_218008.3	XM_218008.3		308222	62638669	XM_218008.3	LOC308222	XP_218008.3	ILMN_1366579	0003850672	S	3016	CCGGCAGCTTCTCAGTTGTATCTGAAGTGCATAGTGCTGGTCCTGTGCTG				1q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610012K18 (predicted) (LOC308222), mRNA.					
Rattus norvegicus	RefSeq	GI_62662198-S	ILMN_55577	EAF1_PREDICTED	XM_224618.3	XM_224618.3		306261	62662198	XM_224618.3	Eaf1_predicted	XP_224618.3	ILMN_1362253	0003390717	S	805	GACCTGCAGTTAAGTGAGTCTGGCAGTGACAGTGATGACTAGCACCAGGC				16p16	PREDICTED: Rattus norvegicus ELL associated factor 1 (predicted) (Eaf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652056-S	ILMN_50022	LOC299750	XM_235086.3	XM_235086.3		299750	62652056	XM_235086.3	LOC299750	XP_235086.3	ILMN_1364303	0004670358	S	2708	GGGACCCAACTCCAGCACCACACTGTTGAGAGGAACGCACTGTAAACGCC				7q13	PREDICTED: Rattus norvegicus similar to citrate synthase (LOC299750), mRNA.					
Rattus norvegicus	RefSeq	GI_62645942-S	ILMN_60427	LOC499898	XM_575244.1	XM_575244.1		499898	62645942	XM_575244.1	LOC499898	XP_575244.1	ILMN_1374922	0003870372	S	538	TGAGATCCAGGACTATGTCTGTCTACTGGCTGTCGCCATCGGTCTTGAAC					PREDICTED: Rattus norvegicus LOC499898 (LOC499898), mRNA.					
Rattus norvegicus	RefSeq	GI_62717786-S	ILMN_48006	LOC367379	XM_346115.2	XM_346115.2		367379	62717786	XM_346115.2	LOC367379	XP_346116.1	ILMN_1370300	0000460369	S	1640	AGCTTGGGCTCCTTTGTGATAGGGGTTATTCTCTGCTAATTCATATGTTT					PREDICTED: Rattus norvegicus similar to poly A binding protein, cytoplasmic 5 (LOC367379), mRNA.					
Rattus norvegicus	RefSeq	GI_62661047-S	ILMN_54474	LOC497701	XM_579642.1	XM_579642.1		497701	62661047	XM_579642.1	LOC497701	XP_579642.1	ILMN_1359932	0003840369	S	3810	CAGGGTCAAGTAAGGACTGGTGACAGGAGCAAGTAGGGGCTGGAATGCCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_134459 (LOC497701), mRNA.					
Rattus norvegicus	RefSeq	GI_62645588-S	ILMN_279744	DISP2_PREDICTED	XM_001075053.1	XM_001075053.1		311324	109470451	XM_001075053.1	Disp2_predicted	XP_001075053.1	ILMN_1365449	0003140450	S	4540	CCTCTGGAAAGGAGGTCAGATTGCAGTTCCAGGTATTGGGGAGGCTGATC				3q35	PREDICTED: Rattus norvegicus dispatched homolog 2 (Drosophila) (predicted) (Disp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644876-S	ILMN_279906	RGD1559890_PREDICTED	XR_009130.1	XR_009130.1		366000	109469508	XR_009130.1	RGD1559890_predicted		ILMN_1358707	0005720672	S	6	GCCTAAAGCAAAGAAGGAAACTCTGGCCCCTCTCAAAGCTGAAGCCAAGG				3p13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (predicted) (RGD1559890_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090312-S	ILMN_283242	MOCS2	XM_001067999.1	XM_001067999.1		294753	109465952	XM_001067999.1	Mocs2	XP_001067999.1	ILMN_1367596	0005550541	S	822	GCTGTCCCAGGAAGACCTACTGTCCCACAGGGTATTGACGCATCGTGATA				2q14	PREDICTED: Rattus norvegicus molybdenum cofactor synthesis 2, transcript variant 1 (Mocs2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands [goid 6777] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660386-S	ILMN_275597	LNX1_PREDICTED	XM_001067995.1	XM_001067995.1		360926	109500456	XM_001067995.1	Lnx1_predicted	XP_001067995.1	ILMN_1351112	0003390364	S	2039	CCCCATCCTGGGTCATGTGGCTGGAATTACCACAGTACTTATATAACTGT				14p11	PREDICTED: Rattus norvegicus ligand of numb-protein X 1 (predicted), transcript variant 1 (Lnx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655416-S	ILMN_264482	ATG4B	NM_001025711.1	NM_001025711.1		316640	71043631	NM_001025711.1	Atg4b	NP_001020882.1	ILMN_1357507	0004230215	S	972	GTCAGACTGCCTAAGCCCAAACACACAAGGGCCTGTCCACATGAAGGCGC	9	+	93062411-93062460	9q36	Rattus norvegicus autophagy-related 4B (yeast) (Atg4b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 45732] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence ISS]	MGC112887; Apg4b	MGC112887; Apg4b
Rattus norvegicus	RefSeq	GI_27730160-S	ILMN_57736	GPR31_PREDICTED	XM_217867.2	XM_217867.2		292310	109457775	XM_217867.2	Gpr31_predicted	XP_217867.1	ILMN_1374770	0000430139	S	911	AGCCTTCGGGGCATGAGGAAGGTAGCAGAATCACCTAGCTCCAACCTCAG	1	-	47581876-47581925	1q11	PREDICTED: Rattus norvegicus G protein-coupled receptor 31 (predicted) (Gpr31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646224-S	ILMN_264573	RGD1564927_PREDICTED	XM_001067005.1	XM_001067005.1		499929	109471181	XM_001067005.1	RGD1564927_predicted	XP_001067005.1	ILMN_1372777	0004570059	S	107	TGTCGGACAGCGATCTAGGCGAGGATGAAGGTCTTCTGTCACTGACTGGC				3q42	PREDICTED: Rattus norvegicus similar to TGFB-induced factor 2 (predicted) (RGD1564927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643468-S	ILMN_266422	LOC499618	XM_001059085.1	XM_001059085.1		499618	109466682	XM_001059085.1	LOC499618	XP_001059085.1	ILMN_1365935	0006940408	S	521	GTTTCTGGCTTAACTCAAGTATCTAAGAGGCAACAGATGGACCCGCTGCC				2q26	PREDICTED: Rattus norvegicus hypothetical LOC499618 (LOC499618), mRNA.					
Rattus norvegicus	RefSeq	GI_14091733-S	ILMN_263185	TAP2	NM_032056.1	NM_032056.1		24812	14091733	NM_032056.1	Tap2	NP_114445.1	ILMN_1349995	0000430739	S	2142	CAGCTCAGGGATGAGCAGGATGTCTACGCTCACTTGGTACAGCAGCGGCT	20	-	4770680-4770729	20p12	Rattus norvegicus transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) (Tap2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large, multisubunit complex which consists of the MHC class I-beta 2 microglobulin dimer, the transporter associated with antigen presentation (TAP), tapasin (an MHC-encoded membrane protein), the chaperone calreticulin and the thiol oxidoreductase ERp57. Functions in the assembly of peptides with newly synthesized MHC class I molecules [goid 42824] [evidence IDA]	Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family [goid 2481] [evidence ISS]; The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of a peptide antigen into, out of, within or between cells. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein [goid 46968] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15197] [evidence IEA]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Catalysis of the reaction: peptide antigen(in) + ATP = peptide antigen(out) + ADP + phosphate [goid 15433] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IPI]; Interacting selectively with the TAP1 subunit of TAP (transporter associated with antigen processing) protein [goid 46978] [evidence IPI]; Interacting selectively with the TAP2 subunit of TAP (transporter associated with antigen processing) protein [goid 46979] [evidence IPI]; Interacting selectively with tapasin, a member of the MHC class I loading complex which bridges the TAP peptide transporter to class I molecules [goid 46980] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	MGC108646; Cim; Abcb3	MGC108646; Cim; Abcb3
Rattus norvegicus	RefSeq	GI_62643065-S	ILMN_52440	LOC499548	XM_574873.1	XM_574873.1		499548	62643065	XM_574873.1	LOC499548	XP_574873.1	ILMN_1372942	0003390100	S	1331	GATAGATAATCGCTTAGTCAAACTAACCAGCGGGCACACAGAGTGTATCC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499548), mRNA.					
Rattus norvegicus	RefSeq	GI_62639165-S	ILMN_63985	ERF_PREDICTED	XM_218336.4	XM_218336.4		292721	109458375	XM_218336.4	Erf_predicted	XP_218336.3	ILMN_1375156	0006620136	S	2604	CCCAGGGGTGGGCTGGAGGGTTTTGGTCAAGCCTTATTCTGTATTGGGAA	1	-	80519442-80519491	1q21	PREDICTED: Rattus norvegicus Ets2 repressor factor (predicted) (Erf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638871-S	ILMN_48259	ZFP628_PREDICTED	XM_341779.3	XM_341779.3		361500	109458115	XM_341779.3	Zfp628_predicted	XP_341780.3	ILMN_1360903	0006770707	S	650	CAGGCAGAGGGAGGCTGGGGCTGCATGGGCTATATGCTGGTTAGGGAATT	1	-	67649778-67649827	1q12	PREDICTED: Rattus norvegicus zinc finger protein 628 (predicted) (Zfp628_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718334-S	ILMN_54353	LOC501368	XM_576781.1	XM_576781.1		501368	62718334	XM_576781.1	LOC501368	XP_576781.1	ILMN_1362713	0002650022	S	665	CCACGCAGCAGACTGGTGTAGTACAGGACCCACCCTGAGTTCATATATTC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501368), mRNA.					
Rattus norvegicus	RefSeq	GI_31342368-S	ILMN_266038	MYST2	NM_181081.2	NM_181081.2		303470	31342368	NM_181081.2	Myst2	NP_851595.1	ILMN_1360490	0006020672	S	3222	TCACTGTGGGTTGGAGGGAGCTGATTTTAAGCATGTTCAGTGGCGGCTCC	10	-	83960399-83960448	10q31	Rattus norvegicus MYST histone acetyltransferase 2 (Myst2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638392-S	ILMN_70093	LOC498994	XM_574284.1	XM_574284.1		498994	62638392	XM_574284.1	LOC498994	XP_574284.1	ILMN_1351223	0006040100	S	699	TGTTCACAAGTTCGGCGCGGACGCGAGAGAGGTGGCTTGTTGGAGACGGA					PREDICTED: Rattus norvegicus similar to tumor protein D53 (LOC498994), mRNA.					
Rattus norvegicus	RefSeq	GI_47576222-S	ILMN_266316	OLR1327	NM_001000475.1	NM_001000475.1		300627	47576222	NM_001000475.1	Olr1327	NP_001000475.1	ILMN_1369987	0001570133	S	846	GCCCATGCTGAACCCCTTGATCTACAGCCTGAGAAATAAGGACGTCAAAG	8	+	42839108-42839157	8q22	Rattus norvegicus olfactory receptor 1327 (Olr1327), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1327	Olr1327
Rattus norvegicus	RefSeq	GI_62641559-S	ILMN_69144	INPP5A_PREDICTED	XM_344971.3	XM_344971.3		365382	109459559	XM_344971.3	Inpp5a_predicted	XP_344972.2	ILMN_1374350	0003190372	S	2952	CATGGTCGCTGCTTGCCAATGTGCCATGTCCGAAGCGGTTGTCCTCCGTG	1	+	199395680-199395729	1q41	PREDICTED: Rattus norvegicus inositol polyphosphate-5-phosphatase A (predicted) (Inpp5a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083598-S	ILMN_300567	MOG	NM_022668.1	NM_022668.1		24558	12083598	NM_022668.1	Mog	NP_073159.1	ILMN_1352713	0004850170	S	1368	TGCTTTGGCAGCCTGGTGGGAGGACCTTGAGAAGCAAGGGTCGAGAACTG	20	+	1611756-1611805	20p12	Rattus norvegicus myelin oligodendrocyte glycoprotein (Mog), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105427	MGC105427
Rattus norvegicus	RefSeq	GI_21592288-S	ILMN_263507	USP15	NM_145184.1	NM_145184.1		171329	21592288	NM_145184.1	Usp15	NP_660185.1	ILMN_1370671	0002760279	S	2960	CTGTGGAGACGGAGTTACCCACCGCATTAAACAGAGGTTTGAGAGGAGGC	7	-	62871253-62871302	7q22	Rattus norvegicus ubiquitin specific peptidase 15 (Usp15), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of various forms of polymeric ubiquitin sequences. Will remove ubiquitin from larger leaving groups [goid 4843] [evidence IDA]; Catalysis of the hydrolysis of various forms of polymeric ubiquitin sequences. Will remove ubiquitin from larger leaving groups [goid 4843] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	Ubp109	Ubp109
Rattus norvegicus	RefSeq	GI_57164032-S	ILMN_275309	EAPA2	NM_001009534.1	NM_001009534.1		494321	57164032	NM_001009534.1	Eapa2	NP_001009534.1	ILMN_1374377	0000780717	S	2679	CTGGGGCTGGCCTGTCCAACATGCTGTGGCCAAAAGCCTTGCCTCTTTGC	4	-	70401178-70401227	4q23	Rattus norvegicus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.				Eapa2	Eapa2
Rattus norvegicus	RefSeq	GI_34854859-S	ILMN_70193	LOC295653	XM_229992.2	XM_229992.2		295653	34854859	XM_229992.2	LOC295653	XP_229992.2	ILMN_1355632	0005360520	S	879	GACGAGAGGGTCACACTTTGCTTTCCACACAAGAGGGTGGACGAAGAGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933436I01 (LOC295653), mRNA.					
Rattus norvegicus	RefSeq	GI_62646862-S	ILMN_274730	RGD1563764_PREDICTED	XM_001057632.1	XM_001057632.1		500030	109471739	XM_001057632.1	RGD1563764_predicted	XP_001057632.1	ILMN_1350841	0001400632	S	2731	GGAAAGAAGGCAGAGGCAGTCTGTGCTGCAGAAGAAGCCCAAGGCTGAAG	4	+	37251491-37251540	4q21	PREDICTED: Rattus norvegicus similar to PHD finger protein 14 isoform 1 (predicted) (RGD1563764_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578074-S	ILMN_265996	OLR621	NM_001000652.1	NM_001000652.1		404849	47578074	NM_001000652.1	Olr621	NP_001000652.1	ILMN_1371227	0004730079	S	401	GCCAACATATCTGTGGTTTACTAGTGATTCTTGCCTGGGTAGGGTCTTGT	3	-	72128392-72128441	3q24	Rattus norvegicus olfactory receptor 621 (Olr621), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr621	Olr621
Rattus norvegicus	RefSeq	GI_62662031-S	ILMN_281584	SOX21_PREDICTED	XM_001078360.1	XM_001078360.1		306168	109502941	XM_001078360.1	Sox21_predicted	XP_001078360.1	ILMN_2038872	0006620070	S	1509	GAAGCGCCTGCGAGCCATGCACATGAAGGAGCATCCGGACTACAAGTACC				15q24	PREDICTED: Rattus norvegicus SRY-box containing gene 21 (predicted) (Sox21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647093-S	ILMN_272486	NDUFB2_PREDICTED	XM_001070173.1	XM_001070173.1		362344	109473377	XM_001070173.1	Ndufb2_predicted	XP_001070173.1	ILMN_1372939	0005690075	S	116	AGCTGGAGACGGTGGAGTCCGTCATGTTGGCGATGGTGGACACATTCAGC				4q22	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (predicted) (Ndufb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641736-S	ILMN_286291	GAL3ST3	NM_001024290.1	NM_001024290.1		499302	66730340	NM_001024290.1	Gal3st3	NP_001019461.1	ILMN_1362511	0004050102	S	1442	CTATCTGTTAAGGAAGCAAAAACGCCGCGGTGGTGTGCGGTCCAGGCCAG	1	+	207937663-207937712	1q43	Rattus norvegicus galactose-3-O-sulfotransferase 3 (Gal3st3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a galactosylceramide = adenosine 3',5'-bisphosphate + a galactosylceramidesulfate [goid 1733] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666450-S	ILMN_266383	UPF3B_PREDICTED	XM_001058104.1	XM_001058104.1		313449	109512476	XM_001058104.1	Upf3b_predicted	XP_001058104.1	ILMN_1349703	0000630504	S	1874	GCGCGCCTTAGTTCGAGTGGAGCAGGAGCACACTAAGTCTTGTTGGGATC				Xq12	PREDICTED: Rattus norvegicus UPF3 regulator of nonsense transcripts homolog B (yeast) (predicted) (Upf3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660677-S	ILMN_276081	LOC682529	XM_001061896.1	XM_001061896.1		682529	109500787	XM_001061896.1	LOC682529	XP_001061896.1	ILMN_1365445	0003840037	S	1131	AGATGGGAAAGACAAGGCTGCACACAGGGAACAGTGCTACCTCACCCAGC					PREDICTED: Rattus norvegicus similar to cytokine-dependent hematopoietic cell linker (LOC682529), mRNA.					
Rattus norvegicus	RefSeq	GI_62650761-S	ILMN_270201	RGD1308005_PREDICTED	XR_009364.1	XR_009364.1		297610	109479467	XR_009364.1	RGD1308005_predicted		ILMN_1358769	0000610398	S	1046	GGACACTCAGCATTGCACACGGGGGATGAAGCCTTTTCTCCACATTCTCC				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9630033F20 gene (predicted) (RGD1308005_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47834328-S	ILMN_267243	OLR1746	NM_001001427.1	NM_001001427.1		405201	47834328	NM_001001427.1	Olr1746	NP_001001427.1	ILMN_1373815	0005290594	S	824	TCTATGCAGTGGGCACTCCTACACTCAACCCTCTTGTATACACCCTGAGG	20	+	1490244-1490293	20p12	Rattus norvegicus olfactory receptor 1746 (Olr1746), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or5; Olr1746	Or5; Olr1746
Rattus norvegicus	RefSeq	GI_62654271-S	ILMN_48802	MON1A_PREDICTED	XM_236627.4	XM_236627.4		315999	109483882	XM_236627.4	Mon1a_predicted	XP_236627.2	ILMN_1368848	0003120551	S	1802	CCTCCTAGCCTGGGTGACAGGTGCCTTTGAGCTCTACTTGTGCTACAGCC	8	+	113170825-113170837:113170931-113170967	8q32	PREDICTED: Rattus norvegicus MON1 homolog A (yeast) (predicted) (Mon1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576396-S	ILMN_283628	OLR1564	NM_001000045.1	NM_001000045.1		288183	47576396	NM_001000045.1	Olr1564	NP_001000045.1	ILMN_1359291	0002570377	S	479	TAGGGTTCCTGTTCAGGTTAACTTTCTGCAGATCTAATGTAATCAAGCAC	11	+	42568410-42568459	11q12	Rattus norvegicus olfactory receptor 1564 (Olr1564), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1564	Olr1564
Rattus norvegicus	RefSeq	GI_13929055-S	ILMN_161710	BCAM	NM_031752.2	NM_031752.2		78958	48976081	NM_031752.2	Bcam	NP_113940.1	ILMN_2039793	0001690326	S	1863	GGGCTTTGGAGATGAGTGTTGAGGCTGAGGACCTCCCAGAGGCAGTCTCT	1	-	79067798-79067826:79067827-79067832:79067922-79067936	1q21	Rattus norvegicus basal cell adhesion molecule (Bcam), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence NAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Combining with a laminin, a glycoprotein that constitutes the majority of proteins in the basement membrane, to initiate a change in cell activity [goid 5055] [evidence ISS]; Combining with a laminin, a glycoprotein that constitutes the majority of proteins in the basement membrane, to initiate a change in cell activity [goid 5055] [evidence IEA]	Lu	Lu
Rattus norvegicus	RefSeq	GI_62649812	ILMN_48870	AIM1L_PREDICTED	XM_216539.4	XM_216539.4		298543	109475637	XM_216539.4	Aim1l_predicted	XP_216539.4	ILMN_1650663	0003120129	S	5401	GCTGAGAGCCGCCTACCACGCCAAACCTGGAGCATCAGTGAATTGGGTCA	5	+	152841234-152841283	5q36	PREDICTED: Rattus norvegicus absent in melanoma 1-like (predicted) (Aim1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646465-S	ILMN_290638	LOC499949	NM_001024315.1	NM_001024315.1		499949	66730295	NM_001024315.1	LOC499949	NP_001019486.1	ILMN_1365411	0001980309	S	1929	GTGGGAGGGATTCACAGCCACCAGCCTCCAGAAACATCCCTGTTTAAAGG	3	-	164679084-164679133	3q42	Rattus norvegicus similar to hypothetical protein FLJ90166 (LOC499949), mRNA.					
Rattus norvegicus	RefSeq	GI_27713199-S	ILMN_265041	LEPREL2_PREDICTED	XM_001062610.1	XM_001062610.1		297595	109474213	XM_001062610.1	Leprel2_predicted	XP_001062610.1	ILMN_2040234	0006280201	S	2233	CGGCCAGCTTCTTTGGATATGGCCACTCAGCTTGGGAAGAGACCAATGAG				4q42	PREDICTED: Rattus norvegicus leprecan-like 2 (predicted) (Leprel2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655387-S	ILMN_66976	COL6A3_PREDICTED	XM_346073.3	XM_346073.3		367313	109486344	XM_346073.3	Col6a3_predicted	XP_346074.3	ILMN_1355773	0000070333	S	9509	AAAAGAAATCAGACCCCTTTCCTGTGCACGTCGCTGGGACAAATGCCTCC	9	-	89965171-89965220	9q35-q36	PREDICTED: Rattus norvegicus procollagen, type VI, alpha 3 (predicted) (Col6a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28849960-S	ILMN_264685	CAPN8	NM_133309.2	NM_133309.2		170808	28849960	NM_133309.2	Capn8	NP_579843.2	ILMN_1353415	0001450541	S	2048	GGCGTGTATGATCCGCCTGGAGACCCTGTTCAAACTGTTCAGGCTTTTGG	13	+	98660261-98660292:98661169-98661186	13q26	Rattus norvegicus calpain 8 (Capn8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	nCL-2; Cls4; CL-2'	nCL-2; Cls4; CL-2'
Rattus norvegicus	RefSeq	GI_57634525-S	ILMN_278783	PPP1R7	NM_001009825.1	NM_001009825.1		301618	57634525	NM_001009825.1	Ppp1r7	NP_001009825.1	ILMN_1361692	0002570102	S	2137	GGGGGAATGGCTTGCATTGAGCTGTGAAGCATGTGACCAGGTGTCCAAGC	9	+	92647877-92647926	9q36	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 7 (Ppp1r7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Sds22; MGC105784	Sds22; MGC105784
Rattus norvegicus	Unigene	Rn.35024	ILMN_161228	PLEKHH1_PREDICTED	Rn.35024		Rn.35024		62650910	XM_234332	Plekhh1_predicted		ILMN_1530439	0002370035	S	530	ACAGTAAAAACAATAAAAGAACAGGAGCAAAAACCCTTGGCAATTTAGAA					PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 (predicted) (Plekhh1_predicted),					
Rattus norvegicus	RefSeq	GI_62665043-S	ILMN_51387	LOC498929	XM_579888.1	XM_579888.1		498929	62665043	XM_579888.1	LOC498929	XP_579888.1	ILMN_1352983	0002900605	S	1224	CGTCGACTCCCTCTGCCCACTTTTCCTTGGGGGAGGCGAGTGGAACTCCA					PREDICTED: Rattus norvegicus LOC498929 (LOC498929), mRNA.					
Rattus norvegicus	RefSeq	GI_62660814-S	ILMN_56783	RGD1562979_PREDICTED	XM_223600.4	XM_223600.4		305501	109500052	XM_223600.4	RGD1562979_predicted	XP_223600.4	ILMN_1367066	0000360348	S	1078	CAGCCTCAGAGAACTCGCAGGACGCCTTCCGTGTGGTCAGCACGAGTGGT	14	+	92656571-92656620	14q21	PREDICTED: Rattus norvegicus similar to DNA-binding protein Ikaros form 1 - mouse (predicted) (RGD1562979_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742582-S	ILMN_64943	DEFB4	NM_022544.2	NM_022544.2		64389	82697611	NM_022544.2	Defb4	NP_071989.1	ILMN_1356087	0006650041	S	232	CTGACCAAAGGAGGCGTATGCTGGGGTCCATGCACTGGCGGTTTTCGACA	16	-	75442144-75442193	16q12.5	Rattus norvegicus defensin beta 4 (Defb4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]		Defb4; Defb3; Defb2	Defb4; Defb3; Defb2
Rattus norvegicus	RefSeq	GI_47576330-S	ILMN_292983	OLR1525	NM_001000529.1	NM_001000529.1		363710	47576330	NM_001000529.1	Olr1525	NP_001000529.1	ILMN_1374568	0002680100	S	474	GCACACACTGCTGATGACTCAACTCTCCTTTTGTGGGGACAACATCATCC	10|NW_047347.1	-	50407-50456		Rattus norvegicus olfactory receptor 1525 (Olr1525), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1525; ratchr10_random-311207-310245_ORF	Olr1525; ratchr10_random-311207-310245_ORF
Rattus norvegicus	RefSeq	GI_54633306-S	ILMN_288320	OPA1	NM_133585.2	NM_133585.2		171116	54633306	NM_133585.2	Opa1	NP_598269.2	ILMN_1355429	0004050010	S	3230	CAGCTGCCGTGTGAGCAGAAGAACACTGGAAATGGCAACTACCTTCTGTG				11q22	Rattus norvegicus optic atrophy 1 homolog (human) (Opa1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]; Any of the inward folds of the mitochondrial inner membrane. Their number, extent, and shape differ in mitochondria from different tissues and organisms. They appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found. Their shape can vary with the respiratory state of the mitochondria [goid 30061] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial inner membrane [goid 7007] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEP]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC124921	MGC124921
Rattus norvegicus	RefSeq	GI_56605781-S	ILMN_267973	MKKS	NM_001008353.1	NM_001008353.1		311456	56605781	NM_001008353.1	Mkks	NP_001008354.1	ILMN_1356194	0003130035	S	2766	GGGTGACCTGTACTTTTCCACTGGCGGGATAGGAGTCTTCACTTCTCATG	3	-	124975232-124975281	3q36	Rattus norvegicus McKusick-Kaufman syndrome (Mkks), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A cilium that consists of a 9 + 2 arrangement of microtubules, radial spokes, and a dynein apparatus. Motile cilia, found on cells that line the lumenal ducts of various tissues, beat with a characteristic whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface [goid 31514] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The assembly of a flagellum. In bacteria, this is a whiplike motility appendage present on the surface of some species; in eukaryotes, flagella are threadlike protoplasmic extensions used to propel flagellates and sperm. Flagella are composed of flagellin and have the same basic structure as cilia but are longer in proportion to the cell and present in much smaller numbers [goid 9296] [evidence IEA]; The assembly of a flagellum. In bacteria, this is a whiplike motility appendage present on the surface of some species; in eukaryotes, flagella are threadlike protoplasmic extensions used to propel flagellates and sperm. Flagella are composed of flagellin and have the same basic structure as cilia but are longer in proportion to the cell and present in much smaller numbers [goid 9296] [evidence ISS]; The progression of the striatum over time from its initial formation until its mature state. The striatum is a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking [goid 21756] [evidence ISS]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The assembly of a sensory cilium, a primary cilium found on sensory neurons that contains an a 9+0 axonemal arrangement of microtubules [goid 35058] [evidence IEA]; The assembly of a sensory cilium, a primary cilium found on sensory neurons that contains an a 9+0 axonemal arrangement of microtubules [goid 35058] [evidence ISS]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IEA]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence IEA]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence ISS]; The process by which the anatomical structures of brain are generated and organized. Morphogenesis pertains to the creation of form. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 48854] [evidence ISS]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence IEA]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence ISS]; A process that is carried out at the cellular level and by which the structure of a cilium is organized. Morphogenesis pertains to the creation of form [goid 60271] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC95109	MGC95109
Rattus norvegicus	RefSeq	GI_62651499-S	ILMN_67156	LOC366742	XM_345730.2	XM_345730.2		366742	62651499	XM_345730.2	LOC366742	XP_345731.2	ILMN_1367667	0004480128	S	350	CACAGTGAGGGAAGTCCACTGTGACCTTGCACAAAAACTTCCTACAGGAA				6q32	PREDICTED: Rattus norvegicus similar to Ig heavy-chain V region precursor (LOC366742), mRNA.					
Rattus norvegicus	RefSeq	GI_47576478-S	ILMN_283619	OLR1607	NM_001000534.1	NM_001000534.1		364275	47576478	NM_001000534.1	Olr1607	NP_001000534.1	ILMN_1372102	0004060446	S	509	ACAAGATCAACCACTTTTTCTGCGAGGCTCCTACGATGCTGAGGCTGGCC	15	+	12609048-12609097	15p16	Rattus norvegicus olfactory receptor 1607 (Olr1607), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr15-12608540-12609487_ORF; Olr1607	ratchr15-12608540-12609487_ORF; Olr1607
Rattus norvegicus	RefSeq	GI_62642834-S	ILMN_269678	RAD17	NM_001024778.1	NM_001024778.1		310034	67078463	NM_001024778.1	Rad17	NP_001019949.1	ILMN_1350980	0002970333	S	1975	GAAGCGAAACTTTGGGAGGTTGAAAATGGAGGCCCTGACTGACCGAGAGC	2	-	31425243-31425275:31425704-31425720	2q12	Rattus norvegicus RAD17 homolog (S. pombe) (Rad17), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A signal transduction-based surveillance mechanism that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage [goid 7093] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication [goid 8156] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577914-S	ILMN_268626	OLR1144	NM_001000876.1	NM_001000876.1		405174	47577914	NM_001000876.1	Olr1144	NP_001000876.1	ILMN_1369912	0003360672	S	872	GTCTGAGGAACAGAGACATGAAAGAGGCTGTGAGGAAATTCTTCAGTGGC	8	-	17484335-17484384	8q13	Rattus norvegicus olfactory receptor 1144 (Olr1144), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1144	Olr1144
Rattus norvegicus	RefSeq	GI_62639335-S	ILMN_293382	LOC292780	XM_001079013.1	XM_001079013.1		292780	109461643	XM_001079013.1	LOC292780	XP_001079013.1	ILMN_1357178	0005220358	S	831	GGCTCCAAAACTCCTGACCTTGGAACCTTAGGGCAGAGGTAGCTGCCCAG				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC15677 (LOC292780), mRNA.					
Rattus norvegicus	RefSeq	GI_56605741-S	ILMN_270931	COL4A4	NM_001008332.1	NM_001008332.1		301562	56605741	NM_001008332.1	Col4a4	NP_001008333.1	ILMN_1372326	0000870026	S	830	CCAGAGCATTTAGGGGCTTCATGGGCGGTGGAAAGGGAAGATACTGAGGG	9	-	81867107-81867156	9q34	Rattus norvegicus procollagen, type IV, alpha 4 (Col4a4), mRNA.				MGC105542	MGC105542
Rattus norvegicus	RefSeq	GI_34881646-S	ILMN_60572	RGD1564397_PREDICTED	XM_228681.3	XM_228681.3		302489	109511216	XM_228681.3	RGD1564397_predicted	XP_228681.3	ILMN_1356744	0006350348	S	676	ATCCGTACCGCTCGGAGGATGAGAGTTCCGCCAGGTTTGTACCCCGCTAC	X	-	138564630-138564679	Xq36	PREDICTED: Rattus norvegicus similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted) (RGD1564397_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667416-S	ILMN_60572	RGD1564397_PREDICTED	XM_228681.3	XM_228681.3		302489	109511216	XM_228681.3	RGD1564397_predicted	XP_228681.3	ILMN_1354346	0003610161	S	1936	TTTGACCCAAAGGGAGAACCACGGAAGTCAGAAGCAGGGCTCAGGCCAGG	X	-	138268916-138268965	Xq36	PREDICTED: Rattus norvegicus similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted) (RGD1564397_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662194-S	ILMN_268405	DNAH1	NM_001033655.1	NM_001033655.1		171339	75905480	NM_001033655.1	Dnah1	NP_001028827.1	ILMN_1367533	0003190673	S	13500	GCGACACTGGATAAAGCGTGGTGTAGCTCTCATCTGTGCCCTGGACTACT	16	-	6693815-6693864	16p16	Rattus norvegicus dynein, axonemal, heavy chain 1 (Dnah1), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence ISS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	RGD1311110	RGD1311110
Rattus norvegicus	RefSeq	GI_62642019-S	ILMN_262454	RGD1559996_PREDICTED	XR_009225.1	XR_009225.1		365428	109463680	XR_009225.1	RGD1559996_predicted		ILMN_1354281	0003290161	S	426	AGTGCAGCTGGTGGTGATCGCCCATAACATAGACCCCACTGAGTTGATGG				1q51	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1559996_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40385886-S	ILMN_292841	NHLRC1	NM_199236.1	NM_199236.1		364682	40385886	NM_199236.1	Nhlrc1	NP_954706.1	ILMN_1349398	0003840575	S	1141	GCATCCCATTCTATAAAAGTCTTTAAAGTGATGGAGGGTAATGGAGGGTG	17	+	23727194-23727243	17p13	Rattus norvegicus NHL repeat containing 1 (Nhlrc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence ISS]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Epm2b	Epm2b
Rattus norvegicus	RefSeq	GI_16758701-S	ILMN_291577	TFF2	NM_053844.1	NM_053844.1		116592	16758701	NM_053844.1	Tff2	NP_446296.1	ILMN_1367411	0004920035	S	442	GGTCACCGGGAGCTGCAAGCCGGAAGAAGAAAGCCTCCACCAGACTGTGT	20	-	9492428-9492477	20p12	Rattus norvegicus trefoil factor 2 (Tff2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence NAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666343-S	ILMN_69815	LOC502480	XM_577960.1	XM_577960.1		502480	62666343	XM_577960.1	LOC502480	XP_577960.1	ILMN_1353940	0003120156	S	450	CAGGACTGCTCTGGAAGTAGGCTAGAAGAGGAGGCTCAGAGGAAGTTAGG					PREDICTED: Rattus norvegicus similar to nuclear receptor subfamily 2, group E, member 1 (LOC502480), mRNA.					
Rattus norvegicus	RefSeq	GI_57222321-S	ILMN_273239	LY49SI1	NM_001009497.1	NM_001009497.1		494206	57222321	NM_001009497.1	Ly49si1	NP_001009497.1	ILMN_1353813	0000430671	S	234	GCCAGAGGAAACTCCAAGCCTTATCAATAACTGCAGCACCATGCAAAGTG	4	-	167457820-167457869	4q42	Rattus norvegicus immunoreceptor Ly49si1 (Ly49si1), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929137-S	ILMN_280765	GABBR2	NM_031802.1	NM_031802.1		83633	13929137	NM_031802.1	Gabbr2	NP_113990.1	ILMN_1367247	0001850632	S	5232	CACACGGTCCATTTCCTAGAGGCTTCCGCCCAAGGGCATCTTCCAGTGAC	5	-	63241590-63241639	5q22	Rattus norvegicus gamma-aminobutyric acid (GABA) B receptor 2 (Gabbr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]	The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Gpr51	Gpr51
Rattus norvegicus	RefSeq	GI_62656400-S	ILMN_64466	LOC501684	XM_577081.1	XM_577081.1		501684	62656400	XM_577081.1	LOC501684	XP_577081.1	ILMN_2038925	0006480048	S	370	AGGGAGCGGAAGGAAACTCACAGGAACAGAAGGGGGCAACAATCAAGGCC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC501684), mRNA.					
Rattus norvegicus	RefSeq	GI_62644470-A	ILMN_298904	ADH6	NM_001012084.1	NM_001012084.1		310903	58865737	NM_001012084.1	Adh6	NP_001012084.1	ILMN_1376848	0001170086	S	1535	GGGCGAATGTTTAGGTCACAAAACCACCACCCCCAGAACCCACGGTGTGG	2	+	235938527-235938576	2q44	Rattus norvegicus alcohol dehydrogenase 6 (class V) (Adh6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079022-S	ILMN_276972	RGD1305679	NM_001014144.1	NM_001014144.1		361228	62079022	NM_001014144.1	RGD1305679	NP_001014166.1	ILMN_1368297	0001230348	S	745	GAGAGAAGATCAATCACTGGAAATGGGGTGCCACAGTGAAGCCACGGATG	17	+	28874778-28874804:28879246-28879268	17p12	Rattus norvegicus similar to 9530008L14Rik protein (RGD1305679), mRNA.					
Rattus norvegicus	RefSeq	GI_62665513-S	ILMN_266063	LOC498972	XR_009548.1	XR_009548.1		498972	109508421	XR_009548.1	LOC498972		ILMN_1363719	0001170014	S	1076	TTCTGGGAGGCTGCCAGCTCATGTTCACCGTTGGAATAGACTTCACAGCC					PREDICTED: Rattus norvegicus similar to copine II (LOC498972), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664830-S	ILMN_266063	LOC498972	XR_009548.1	XR_009548.1		498972	109508421	XR_009548.1	LOC498972		ILMN_1361345	0003940411	S	1689	CTTCCGAGAGTTCCGCAATGCAGCCAAAGAAACGCTGGCTAAAGCGGTGC					PREDICTED: Rattus norvegicus similar to copine II (LOC498972), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646499-S	ILMN_292152	LAMA5	XM_001060527.1	XM_001060527.1		140433	109471511	XM_001060527.1	Lama5	XP_001060527.1	ILMN_1359211	0004560039	S	10917	CACAGGCCGTTTGCCAGAGACCTTGGCTGATTCTCCAGCGCTTTTGCACC				3q43	PREDICTED: Rattus norvegicus laminin, alpha 5 (Lama5), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; A laminin complex composed of alpha3, beta3 and gamma2 polypeptide chains [goid 5610] [evidence IDA]; A laminin complex composed of alpha5, beta1 and gamma1 polypeptide chains [goid 43259] [evidence ISS]	Branching of the ureteric bud [goid 1658] [evidence ISS]; The process by which the anatomical structures of polarized epithelium are generated and organized. Morphogenesis pertains to the creation of form. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis [goid 1738] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of the salivary gland over time, from its formation to the mature structure. Salivary glands include any of the saliva-secreting exocrine glands of the oral cavity [goid 7431] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]	Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_19424307-S	ILMN_280426	LGALS2	NM_133599.1	NM_133599.1		171134	19424307	NM_133599.1	Lgals2	NP_598283.1	ILMN_1361716	0002370280	S	372	CCACCTGCGCTACTTAAGCATGGATGGGCTCCAGATCTCCTCCTTCAAGC	7	-	116811516-116811521:116811522-116811565	7q34	Rattus norvegicus lectin, galactoside-binding, soluble 2 (Lgals2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with any glycoside in which the sugar moiety is galactose [goid 16936] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62666214-S	ILMN_63502	LOC502456	XM_577937.1	XM_577937.1		502456	62666214	XM_577937.1	LOC502456	XP_577937.1	ILMN_1366148	0002510692	S	322	GGACAGCAGAAGGCCTCGCACTCGACTCAAATTGCAACAGCTCAGGATCT					PREDICTED: Rattus norvegicus similar to homeobox protein BIX2 (LOC502456), mRNA.					
Rattus norvegicus	RefSeq	GI_62657067-S	ILMN_63662	EZH1_PREDICTED	XM_220986.4	XM_220986.4		303547	109489032	XM_220986.4	Ezh1_predicted	XP_220986.4	ILMN_1362653	0005290278	S	1859	CCGATGTGGCCGGATGGGGCACCTTCATCAAGGAGTCTGTGCAGAAGAAC	10	-	90215202-90215251	10q32.1	PREDICTED: Rattus norvegicus enhancer of zeste homolog 1 (Drosophila) (predicted) (Ezh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14091741-S	ILMN_63662	EZH1_PREDICTED	XM_220986.4	XM_220986.4		303547	109489032	XM_220986.4	Ezh1_predicted	XP_220986.4	ILMN_1366479	0005290609	S	4888	CCCCCGCTCAGAGATGCTGCGTGTTCGTCCAGGAGGTCATATTCTTTATA	10	-	90210483-90210532	10q32.1	PREDICTED: Rattus norvegicus enhancer of zeste homolog 1 (Drosophila) (predicted) (Ezh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34865731-S	ILMN_297804	RGD1561410_PREDICTED	XM_235208.2	XM_235208.2		299844	34865731	XM_235208.2	RGD1561410_predicted	XP_235208.2	ILMN_1364147	0000130253	S	779	GCTCTCTGGTCACAGCGGACATACAAAAGGAAATCAGTAGCGCACTTGGC	7	+	61824794-61824843	7q22	PREDICTED: Rattus norvegicus similar to sentrin 15 (predicted) (RGD1561410_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424165-S	ILMN_292996	FBXO32	NM_133521.1	NM_133521.1		171043	19424165	NM_133521.1	Fbxo32	NP_598205.1	ILMN_1351393	0006840372	S	740	CAGCCCCAGACCTGCATGTGCTCAGTGAAGACCGGCTACTGTGGAAGAGA	7	-	94912180-94912229	7q33	Rattus norvegicus F-box protein 32 (Fbxo32), mRNA.	A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1) [goid 19005] [evidence IPI]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IPI]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Atrogin1; MAFbx	Atrogin1; MAFbx
Rattus norvegicus	RefSeq	GI_62660631-S	ILMN_280625	SORCS2_PREDICTED	XM_001063684.1	XM_001063684.1		305438	109500835	XM_001063684.1	Sorcs2_predicted	XP_001063684.1	ILMN_1372483	0006220176	S	2468	CCGAGGAGAGGCAGTGGCTGTGCGACCTAGAGAAGATGTGCTGTTTGTGG				14q21	PREDICTED: Rattus norvegicus sortilin-related VPS10 domain containing receptor 2 (predicted) (Sorcs2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577654-S	ILMN_282809	OLR554	NM_001000323.1	NM_001000323.1		295797	47577654	NM_001000323.1	Olr554	NP_001000323.1	ILMN_2040610	0005260255	S	772	GGATCAGGTATCATTACATACTTGAGACCAAAGTCCAGCCACTCAGCAGG	3	+	70875287-70875336	3q24	Rattus norvegicus olfactory receptor 554 (Olr554), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr554; ratchr3-70770888-70771838_ORF	Olr554; ratchr3-70770888-70771838_ORF
Rattus norvegicus	RefSeq	GI_62651747-S	ILMN_267702	APC2_PREDICTED	XM_001076585.1	XM_001076585.1		299611	109481579	XM_001076585.1	Apc2_predicted	XP_001076585.1	ILMN_1373693	0003060148	S	6921	GCCCTTCACCCATGAGGGTCTGAGTGTTGTCACGGGGGGCTTTCCTACTA				7q11	PREDICTED: Rattus norvegicus adenomatosis polyposis coli 2 (predicted) (Apc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34852838-S	ILMN_59752	RGD1564370_PREDICTED	XM_574781.2	XM_574781.2		499457	109509585	XM_574781.2	RGD1564370_predicted	XP_574781.1	ILMN_1363337	0006450373	S	159	AGGACATTCAGCCCAGAAGAGATCTCACGTGCTTCGTCAAATGGCCCCGC	20	-	41433320-41433369	20q12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1564370_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666131-S	ILMN_59752	RGD1564370_PREDICTED	XM_574781.2	XM_574781.2		499457	109509585	XM_574781.2	RGD1564370_predicted	XP_574781.1	ILMN_1359936	0000770528	S	463	CACTTTGGTGGAGAACAAGAGGGCTCAGCTGGTGGTGACTGCCCATGATG	20	-	41433016-41433065	20q12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1564370_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656752-S	ILMN_66710	VEZF1_PREDICTED	XM_213421.3	XM_213421.3		287615	62656752	XM_213421.3	Vezf1_predicted	XP_213421.3	ILMN_1358388	0006510093	S	5913	CCGTGTGTCGAAGGCACCGACGGCCACCACTCTACAAAAGGCAGAGTATG				10q26	PREDICTED: Rattus norvegicus vascular endothelial zinc finger 1 (predicted) (Vezf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651515-S	ILMN_67853	LOC503079	XM_578599.1	XM_578599.1		503079	62651515	XM_578599.1	LOC503079	XP_578599.1	ILMN_1364410	0002340746	S	227	TCTGTGCTCCGACATTGTTGATCCCAACTCAGGGGGCAGTCAGCCAGCAG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC503079), mRNA.					
Rattus norvegicus	RefSeq	GI_62661450-S	ILMN_65357	RGD1565222_PREDICTED	XM_573773.2	XM_573773.2		498514	109501646	XM_573773.2	RGD1565222_predicted	XP_573773.2	ILMN_1349409	0000130441	S	1380	CCTGGATGCTAACTCTAAGCACGGCACCAAAGCCAACCGTGTGTACGGGC	15	-	32657115-32657164	15p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931414P19 (predicted) (RGD1565222_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27714144-S	ILMN_262817	GPR63_PREDICTED	XM_001060842.1	XM_001060842.1		297952	109476237	XM_001060842.1	Gpr63_predicted	XP_001060842.1	ILMN_1358382	0000050692	S	998	GGGCCCCATTCACCACCTACAGCCTTGTGGCTACCTTCAGTAAGCACTTT				5q21	PREDICTED: Rattus norvegicus G protein-coupled receptor 63 (predicted) (Gpr63_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639693-S	ILMN_272448	BCL2L12_PREDICTED	XM_001078625.1	XM_001078625.1		361567	109461886	XM_001078625.1	Bcl2l12_predicted	XP_001078625.1	ILMN_1351698	0007000372	S	540	AGTCATCAACCAAAAGCTGGCCTCTGACCCGGCCCTGCATCGTAAGCTGG				1q22	PREDICTED: Rattus norvegicus BCL2-like 12 (proline rich) (predicted) (Bcl2l12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51889721-S	ILMN_269833	STFA2L1	NM_001004129.1	NM_001004129.1		408214	51889721	NM_001004129.1	Stfa2l1	NP_001004129.1	ILMN_1353572	0001230398	S	7	CAAGACACCATAGTAATAACAGGAGGCTTGTCGGAGGCCAGACCTGCCAC	11	-	66267801-66267850	11q22	Rattus norvegicus stefin A2-like 1 (Stfa2l1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741501-S	ILMN_275238	ACAT2	NM_001006995.1	NM_001006995.1		308100	55741501	NM_001006995.1	Acat2	NP_001006996.1	ILMN_1361128	0000540538	S	1843	CAAGTGTGCCTCTGGGTTGTTAGAAAGTGAGCAGCAAGCGCCTTCAGTGC	1	+	41939906-41939955	1q11	Rattus norvegicus acetyl-Coenzyme A acetyltransferase 2 (Acat2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA [goid 3985] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC95138; Ab2-076	MGC95138; Ab2-076
Rattus norvegicus	RefSeq	GI_16758065-S	ILMN_268944	NDE1	NM_053347.1	NM_053347.1		83836	16758065	NM_053347.1	Nde1	NP_445799.1	ILMN_1368871	0000870082	S	2059	GCCTGTTCAATAGATGTGTGTGTCAGTCCTTCCATGTCTGTGCACGTGGC	10	-	777921-777970	10q11	Rattus norvegicus nudE nuclear distribution gene E homolog 1 (A. nidulans) (Nde1), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A centrosome from which one pole of a mitotic or meiotic spindle is organized [goid 31616] [evidence ISS]	The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell [goid 7020] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence ISS]; The replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized [goid 51298] [evidence ISS]; The replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized [goid 51298] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Nude	Nude
Rattus norvegicus	RefSeq	GI_62656747-S	ILMN_263342	MPO_MAPPED	XM_001081173.1	XM_001081173.1		303413	109491601	XM_001081173.1	Mpo_mapped	XP_001081173.1	ILMN_1374448	0001990672	S	1959	GCTCCTTGCCTGCCTCATTGGCACTCAGTTTAGGAAGCTACGGGATGGCG				10q26	PREDICTED: Rattus norvegicus myeloperoxidase (mapped) (Mpo_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62643580-S	ILMN_54522	LOC499640	XM_574961.1	XM_574961.1		499640	62643580	XM_574961.1	LOC499640	XP_574961.1	ILMN_1365945	0005720524	S	2513	TCCTGCCTTGATCTTTGGTCAGGTATGCAGCACATTTGGGTCCTTAAGCC				2q32	PREDICTED: Rattus norvegicus similar to WD repeat domain 49 (LOC499640), mRNA.					
Rattus norvegicus	RefSeq	GI_62656901-S	ILMN_54025	CBX1_PREDICTED	XM_340885.3	XM_340885.3		360609	109488885	XM_340885.3	Cbx1_predicted	XP_340886.3	ILMN_1358745	0001980091	S	3121	CATTGGCTCAAGTATTGCAGGAGGGCCTATGGGAGATGGAGGAGGGGAGC	10	+	85564403-85564452	10q31	PREDICTED: Rattus norvegicus chromobox homolog 1 (Drosophila HP1 beta) (predicted) (Cbx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741824-A	ILMN_268249	TERT	XM_001052969.1	XM_001052969.1		301965	109457645	XM_001052969.1	Tert	XP_001052969.1	ILMN_1376574	0004780671	S	3287	CTGCTCAAGCTGGCTGCTCATTCTGTCACCTACAAGTGTCTCCTGGGACC	1	-	30445748-30445797	1p11	PREDICTED: Rattus norvegicus telomerase reverse transcriptase (Tert), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits [goid 5697] [evidence IEA]; Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits [goid 5697] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence [goid 3720] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence [goid 3720] [evidence ISS]; Catalysis of the extension of the 3' end of a DNA strand by one deoxynucleotide at a time. Cannot initiate a chain de novo; uses the RNA subunit of the telomerase enzyme complex as its template [goid 3721] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the extension of the 3' end of a DNA strand by one deoxynucleotide at a time. Cannot initiate a chain de novo; uses the RNA subunit of the telomerase enzyme complex as its template [goid 3721] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651857-S	ILMN_271878	LOC691708	XM_001079338.1	XM_001079338.1		691708	109480376	XM_001079338.1	LOC691708	XP_001079338.1	ILMN_1350568	0001850692	S	646	TGGCCACCCAGCAAAAACTTACTCATGGGGTGGGAAGCAAACAGCCCCTG	7	+	18639645-18639694	7q13	PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2R 2 (LOC691708), mRNA.		The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661577-I	ILMN_50213	CAB39L_PREDICTED	XM_573796.1	XM_573796.1		290291	62661577	XM_573796.1	Cab39l_predicted	XP_573796.1	ILMN_1375890	0006840592	S	414	GGGTCTGCTTATTGTTGCTTAAACAAGCTGGGAGTTTCATTAGCCCGGGG				15p12	PREDICTED: Rattus norvegicus calcium binding protein 39-like (predicted) (Cab39l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865839-A	ILMN_271697	MLPH	NM_001012135.1	NM_001012135.1		316620	58865839	NM_001012135.1	Mlph	NP_001012135.1	ILMN_1376786	0006380603	S	2642	CCAGAGTCAAGTGTGTCAGGGCCAGTTTTGCTGGTGTCTGCACGGTCTGC	9	+	90148891-90148940	9q36	Rattus norvegicus melanophilin (Mlph), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence IEA]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]; Interacting selectively with a class V myosin; myosin V is a dimeric molecule involved in intracellular transport [goid 31489] [evidence IEA]; Interacting selectively with a class V myosin; myosin V is a dimeric molecule involved in intracellular transport [goid 31489] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IEA]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647724-S	ILMN_57480	RGD1564754_PREDICTED	XM_575589.2	XM_575589.2		500239	109472311	XM_575589.2	RGD1564754_predicted	XP_575589.1	ILMN_1350164	0002630075	S	457	ACCCAACCTACCGGCTGTGCAAGTGGCTTGAAGAAAGAAGAGGAGGGGCC	4	+	120160577-120160626	4q34	PREDICTED: Rattus norvegicus similar to transcription factor FIGa (predicted) (RGD1564754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556794-S	ILMN_267512	IGFBP7	NM_001013048.1	NM_001013048.1		289560	61556794	NM_001013048.1	Igfbp7	NP_001013066.1	ILMN_1368086	0001990471	S	763	CGCGTCCAATTCCCAAGGACAGGCTTCAGCGTCGGCCAAAATTACAGTGG	14	+	33068051-33068100	14p11	Rattus norvegicus insulin-like growth factor binding protein 7 (Igfbp7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions [goid 51414] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651296	ILMN_279456	LOC362792	XM_001072894.1	XM_001072894.1		362792	109480046	XM_001072894.1	LOC362792	XP_001072894.1	ILMN_1650502	0002570592	S	1460	CGTGCAGGAGCAGCTGAGGCAACTCTTTGAACGGGACTGGAGTTCCCACT				6q32	PREDICTED: Rattus norvegicus similar to phospholipase D family, member 4 (LOC362792), mRNA.					
Rattus norvegicus	RefSeq	GI_47777697-S	ILMN_263463	OLR920	NM_001001356.1	NM_001001356.1		288798	47777697	NM_001001356.1	Olr920	NP_001001356.1	ILMN_1372486	0004810112	S	457	ATCCTGCCACCACTTAGCCTGGGCCTCAATCTGGAATTCTGTGACTCTGT	7	-	4057922-4057971	7q11	Rattus norvegicus olfactory receptor 920 (Olr920), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr920	Olr920
Rattus norvegicus	RefSeq	GI_13162334-A	ILMN_302106	EVL	NM_024147.1	NM_024147.1		79115	13162334	NM_024147.1	Evl	NP_077061.1	ILMN_1376450	0003710739	S	1748	TGTCAGGATGCAGCACAGCTCCAGCAGCCACAGTGTCCCAGTTTGTCCAC				6q32	Rattus norvegicus Enah/Vasp-like (Evl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	Any process involved in the controlled movement of a cell [goid 6928] [evidence NAS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence NAS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence TAS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence NAS]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin [goid 5522] [evidence ISS]; Interacting selectively with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin [goid 5522] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576462-S	ILMN_283546	OLR88	NM_001000746.1	NM_001000746.1		405013	47576462	NM_001000746.1	Olr88	NP_001000746.1	ILMN_1357916	0000060333	S	897	CATTCGAAAGCGGGTGGCGCAGATCTTTCTTCTGAATCAAGGATGTCAGT	1	+	161033322-161033371	1q32	Rattus norvegicus olfactory receptor 88 (Olr88), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr88	Olr88
Rattus norvegicus	RefSeq	GI_11560086-S	ILMN_273818	PYGL	NM_022268.1	NM_022268.1		64035	11560086	NM_022268.1	Pygl	NP_071604.1	ILMN_1349760	0007000139	S	2460	CCGAACAATCAGGGAGTATGCCAAGGACATCTGGAACATGGAGCCTTCCG	6	-	92298541-92298590	6q24	Rattus norvegicus liver glycogen phosphorylase (Pygl), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IDA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IDA]; The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate [goid 6015] [evidence IMP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a purine, an organic nitrogenous base [goid 2060] [evidence ISS]; Interacting selectively with a purine, an organic nitrogenous base [goid 2060] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IMP]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence ISS]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence ISS]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IEA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence ISS]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 32052] [evidence ISS]; Interacting selectively with bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 32052] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IC ]		
Rattus norvegicus	RefSeq	GI_13929051-S	ILMN_281560	HSPB3	NM_031750.1	NM_031750.1		78951	13929051	NM_031750.1	Hspb3	NP_113938.1	ILMN_1361179	0000430113	S	415	AGACCTTCGAGGGCTGGCTGCTGATCAAGGCACAGCACGGAACCAGAATG	2	-	45078865-45078914	2q14	Rattus norvegicus heat shock protein 3 (Hspb3), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62649413-S	ILMN_289407	DMRTA2_PREDICTED	XM_001068179.1	XM_001068179.1		313471	109477005	XM_001068179.1	Dmrta2_predicted	XP_001068179.1	ILMN_1356471	0001230324	S	2342	GGTTACGGGGGCGGGCTGTACGGGCCCATGGTCAACGGCACCCCTGAGAA				5q35	PREDICTED: Rattus norvegicus doublesex and mab-3 related transcription factor like family A2 (predicted) (Dmrta2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978574-S	ILMN_276773	TSPO	NM_012515.1	NM_012515.1		24230	6978574	NM_012515.1	Tspo	NP_036647.1	ILMN_1349787	0004810021	S	646	GTCCAGGAAGCCACCAGGTAGGTCAAGGTGGTCAGTGCTAAGTCCCATGC	7	+	121599207-121599256	7q34	Rattus norvegicus translocator protein (Tspo), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with benzodiazepines, a class of drugs with hypnotic, anxiolytic, anticonvulsive, amnestic and myorelaxant properties, to initiate a change in cell activity [goid 8503] [evidence IDA]	PTBZR02; Ptbzr; RATPTBZR02; MBR	PTBZR02; Ptbzr; RATPTBZR02; MBR
Rattus norvegicus	RefSeq	GI_62643665-S	ILMN_58917	LOC497757	XM_579393.1	XM_579393.1		497757	62643665	XM_579393.1	LOC497757	XP_579393.1	ILMN_1371357	0002030685	S	4354	CCTAGCATTTAGGCAGTCCTGTTCCGACCCAAGCAGCATGAAGGAATTAC				2q33	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017090 (LOC497757), mRNA.					
Rattus norvegicus	RefSeq	GI_8392943-S	ILMN_270384	SLC7A3	NM_017217.1	NM_017217.1		29485	8392943	NM_017217.1	Slc7a3	NP_058913.1	ILMN_1360706	0007100239	S	1928	GTACTCTTGACCCCACGAAGAGCTGGGCCTCTCATGTGATGTTAGTGATG	X	-	89159750-89159799	Xq31	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 (Slc7a3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IC ]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IEA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IDA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IMP]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence ISS]; The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of, within or between cells [goid 15819] [evidence IEA]; The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of, within or between cells [goid 15819] [evidence IDA]; The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of, within or between cells [goid 15819] [evidence ISS]; The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of, within or between cells [goid 15822] [evidence IDA]; Any process that modulates the frequency, rate or extent of the TOR signaling pathway [goid 32006] [evidence IMP]	Catalysis of the transfer of L-ornithine from one side of a membrane to the other. L-ornithine is 2,5-diaminopentanoic acid [goid 64] [evidence IDA]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence IEA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence IDA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence ISS]; Catalysis of the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid [goid 15189] [evidence IEA]; Catalysis of the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid [goid 15189] [evidence IDA]; Catalysis of the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid [goid 15189] [evidence ISS]; Catalysis of the transfer of a positively charged amino acid from one side of the membrane to the other [goid 15326] [evidence IEA]; Catalysis of the transfer of a positively charged amino acid from one side of the membrane to the other [goid 15326] [evidence IDA]; Catalysis of the transfer of a positively charged amino acid from one side of the membrane to the other [goid 15326] [evidence ISS]	Cat3; Slc7a2; cat-3; Atrc3	Cat3; Slc7a2; cat-3; Atrc3
Rattus norvegicus	RefSeq	GI_34881506-S	ILMN_295726	NXF7	NM_001037216.1	NM_001037216.1		501621	81295368	NM_001037216.1	Nxf7	NP_001032293.1	ILMN_1367173	0004120215	S	1859	CTCAAGAGCAGCAAAGAATGGTGCAGGCTTTCTCCACCCAGTCGGGGATG	X	+	122911555-122911604	Xq35	Rattus norvegicus nuclear RNA export factor 7 (Nxf7), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC114500	MGC114500
Rattus norvegicus	RefSeq	GI_62645729-S	ILMN_50089	LOC502655	XM_578149.1	XM_578149.1		502655	62645729	XM_578149.1	LOC502655	XP_578149.1	ILMN_1354200	0006650446	S	512	GACCACTGTAGAAGAGCCCAGTGCTGCTGTCCCTGATGAGTTACCCACAC					PREDICTED: Rattus norvegicus similar to heat shock 90kDa protein 1, beta (LOC502655), mRNA.					
Rattus norvegicus	RefSeq	GI_62641970	ILMN_267657	RGD1311946	NM_001025683.1	NM_001025683.1		309145	71043853	NM_001025683.1	RGD1311946	NP_001020854.1	ILMN_1650070	0002450400	S	1522	AGCTCAGGGGATGTTAAGGTGCCAACCACAGCCTCATGCCAGCTCAGCAC	1	+	206242700-206242749	1q42	Rattus norvegicus similar to RIKEN cDNA 1810055G02 (RGD1311946), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC116211	MGC116211
Rattus norvegicus	RefSeq	GI_62645560-S	ILMN_278445	AQR_PREDICTED	XM_001074830.1	XM_001074830.1		366163	109470436	XM_001074830.1	Aqr_predicted	XP_001074830.1	ILMN_1372034	0006770706	S	4375	GGGTCTGTTCAAGCTAACCTCACACCCAGTCCAACGGATGCCAGCCTGAG				3q35	PREDICTED: Rattus norvegicus aquarius (predicted) (Aqr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661122-S	ILMN_275922	LRRC3B_PREDICTED	XR_008527.1	XR_008527.1		305705	109502187	XR_008527.1	Lrrc3b_predicted		ILMN_1365178	0003450358	S	1633	GGCGGATGAACCTGATGACATTAGCACTGTGGTATAGCAACCACGCTGGC				15p16	PREDICTED: Rattus norvegicus leucine rich repeat containing 3B (predicted) (Lrrc3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651675-S	ILMN_278267	SIRT6	NM_001031649.1	NM_001031649.1		299638	72255524	NM_001031649.1	Sirt6	NP_001026819.1	ILMN_1350442	0006900239	S	1263	TGGCGGGCAGACACCCAGTGTTCAGCACAGTTCCTTCCGAGTCTCACTGT	7	+	9560330-9560379	7q11	Rattus norvegicus sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae) (Sirt6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing [goid 5677] [evidence IEA]	Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin [goid 6342] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6476] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the removal of one or more acetyl groups from a histone, requiring NAD [goid 17136] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MGC114368	MGC114368
Rattus norvegicus	RefSeq	GI_62644752-S	ILMN_70017	LOC499756	XM_575091.1	XM_575091.1		499756	62644752	XM_575091.1	LOC499756	XP_575091.1	ILMN_1362062	0002570092	S	931	GAGAACTCAAGTCCAACACCAGCATCCATATTGCGTGGCTCACAACCGCC				3p13	PREDICTED: Rattus norvegicus similar to lipocalin (LOC499756), mRNA.					
Rattus norvegicus	RefSeq	GI_8392938-S	ILMN_272691	ATP5G1	NM_017311.1	NM_017311.1		29754	8392938	NM_017311.1	Atp5g1	NP_059007.1	ILMN_1370511	0006290364	S	505	CCATGCCAGTCCTGGTGCTGGAGTGTGCTGAGCTTTACCATTAAACTACG	10	-	84788656-84788705	10q31	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) (Atp5g1), nuclear gene encoding mitochondrial protein, mRNA.	All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins [goid 276] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence NAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34857524-S	ILMN_57104	LOC365278	XM_344906.1	XM_344906.1		365278	34857524	XM_344906.1	LOC365278	XP_344907.1	ILMN_1368124	0003130632	S	11	GGTGACCTTAAAGACCCTTCCTAAGGGTGCAGGTTACTGCAAGCCCCTGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (LOC365278), mRNA.					
Rattus norvegicus	RefSeq	GI_62667122-S	ILMN_67885	LOC501601	XM_577001.1	XM_577001.1		501601	62667122	XM_577001.1	LOC501601	XP_577001.1	ILMN_1368534	0000670519	S	1626	CTGAATTGGCTTGAGTTGCCCTATGCTGGCAGAAGGTTGACATTGGGCGA				Xq31	PREDICTED: Rattus norvegicus similar to riboflavin kinase (LOC501601), mRNA.					
Rattus norvegicus	RefSeq	GI_58865669-A	ILMN_278446	BTD	NM_001012047.1	NM_001012047.1		306262	58865669	NM_001012047.1	Btd	NP_001012047.1	ILMN_1376481	0004920286	S	1623	CCGGCCTGGTGACGGCAGCTCTCTATGGGCGGTTGTATGAGAGGAATTAG	16	+	7141458-7141507	16p16	Rattus norvegicus biotinidase (Btd), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence ISS]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]	The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]	Catalysis of the reaction: biotin amide + H2O = biotin + NH3 [goid 47708] [evidence IEA]	MGC109548	MGC109548
Rattus norvegicus	RefSeq	GI_10242376-S	ILMN_295040	GRIK4	NM_012572.1	NM_012572.1		24406	10242376	NM_012572.1	Grik4	NP_036704.1	ILMN_1365052	0001170152	S	2963	GTGGAGCCAGGCGGGGAGGCGGGAGGGCTAATGTTACAACCTCCTTCTCT	8	-	45510407-45510456	8q22	Rattus norvegicus glutamate receptor, ionotropic, kainate 4 (Grik4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence TAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence TAS]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15277] [evidence TAS]	KA1	KA1
Rattus norvegicus	RefSeq	GI_62642043-S	ILMN_48532	RGD1307524_PREDICTED	XM_219909.4	XM_219909.4		309415	109459977	XM_219909.4	RGD1307524_predicted	XP_219909.4	ILMN_1372648	0006520338	S	1854	GGCAGGAGACATGATGGTTAACACCAAGCGACTCCAGTCCTCCAGCCTCC	1	-	227335660-227335709	1q51	PREDICTED: Rattus norvegicus similar to Friedreich ataxia region gene X123 (predicted) (RGD1307524_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41054883-S	ILMN_267352	RGD735029	NM_199493.1	NM_199493.1		307480	41054883	NM_199493.1	RGD735029	NP_955787.1	ILMN_1352457	0002640324	S	2239	GCACCTGGAGTCTTGGAGCCAGAGGGTGGAGACCATGAGTCCTTTTTAGG	18	+	31191614-31191663	18p11	Rattus norvegicus SEL1 domain containing protein RGD735029 (RGD735029), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC72566	MGC72566
Rattus norvegicus	RefSeq	GI_6978720-S	ILMN_283744	CTSH	NM_012939.1	NM_012939.1		25425	6978720	NM_012939.1	Ctsh	NP_037071.1	ILMN_1367864	0004060121	S	999	GGTATAAGCCACGGCTGCACAGGCCAACTGCTTGGCAGACAAAGGGAGGA	8	+	94990074-94990080:94990081-94990123	8q31	Rattus norvegicus cathepsin H (Ctsh), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence TAS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with a kininogen, any of a group of plasma proteins that are kinin precursors [goid 30984] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62663887-S	ILMN_264412	DHTKD1	NM_001025720.1	NM_001025720.1		361272	71043639	NM_001025720.1	Dhtkd1	NP_001020891.1	ILMN_1348881	0000460324	S	2550	GCGTGATTTTGCCATCATTCGACTAGAGGAACTCTGCCCTTTCCCGCTGG	17	+	83464794-83464843	17q12.3	Rattus norvegicus dehydrogenase E1 and transketolase domain containing 1 (Dhtkd1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2 [goid 4591] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with thiamin pyrophosphate, the diphosphoric ester of thiamin. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases [goid 30976] [evidence IEA]	MGC116097	MGC116097
Rattus norvegicus	RefSeq	GI_62641958-S	ILMN_262932	LOC502374	XR_009623.1	XR_009623.1		502374	109463198	XR_009623.1	LOC502374		ILMN_1372059	0000050390	S	538	TGCGCCGCCACCACTTGTTAACCACCTCTTGCCTCGAGTCGGCTTGCGAT				1q41	PREDICTED: Rattus norvegicus hypothetical protein LOC502374 (LOC502374), misc RNA.		Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638973-S	ILMN_274052	RGD1559687_PREDICTED	XM_001061151.1	XM_001061151.1		502285	109460943	XM_001061151.1	RGD1559687_predicted	XP_001061151.1	ILMN_1374204	0000870161	S	2089	CCCATCTGTACTCTCCTTGAACTTCTTGTCTGTGCAGTCTGGTTAGGAGC				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (predicted) (RGD1559687_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717714-S	ILMN_66952	LOC301881	XM_229363.3	XM_229363.3		301881	62717714	XM_229363.3	LOC301881	XP_229363.3	ILMN_1371041	0006590739	S	265	CTGCAAATGGCTCCATATCACTGAGGAAGCCTGATGATGCCGGTGCAAGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC301881), mRNA.					
Rattus norvegicus	RefSeq	GI_62663180-S	ILMN_67441	LOC361204	XM_341485.2	XM_341485.2		361204	62663180	XM_341485.2	LOC361204	XP_341486.2	ILMN_1358968	0002680711	S	3302	TGGAGCCAGTGGAGTCAAGCTCTCTCTGCATCTCACAATCAAGGGCAACG					PREDICTED: Rattus norvegicus similar to testican (LOC361204), mRNA.					
Rattus norvegicus	RefSeq	GI_62339365-S	ILMN_283272	KPNA4	NM_001014793.1	NM_001014793.1		361959	62339365	NM_001014793.1	Kpna4	NP_001014793.1	ILMN_1360324	0003780026	S	1730	ATGCCCAAATGAGTCAAGGTGGCGAGTGGGTGCGAGTGAGAATGAGTGGC	2	-	159073344-159073393	2q31	Rattus norvegicus karyopherin alpha 4 (importin alpha 3) (Kpna4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]	importin	importin
Rattus norvegicus	RefSeq	GI_62658281-S	ILMN_61003	LOC363845	XM_344054.2	XM_344054.2		363845	62658281	XM_344054.2	LOC363845	XP_344055.2	ILMN_1356005	0002760746	S	365	TGTGCGGATAACGGCCCAAAGCCGGGTTCATGTCCGCAAGCATCACTGCT					PREDICTED: Rattus norvegicus similar to Cohen syndrome 1 protein isoform 1 (LOC363845), mRNA.					
Rattus norvegicus	RefSeq	GI_62662748-S	ILMN_276746	RGD1565014_PREDICTED	XM_001066828.1	XM_001066828.1		290790	109504299	XM_001066828.1	RGD1565014_predicted	XP_001066828.1	ILMN_1357722	0006380082	S	5883	CCTGGGCGGAGTCATTGCTGTTTCAGCTACCCTGGCAGTTTTGGGGCTGT				16q12.2	PREDICTED: Rattus norvegicus similar to Low-density lipoprotein receptor-related protein 4 precursor (LDLR dan) (predicted) (RGD1565014_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651681-S	ILMN_54100	EDG6_PREDICTED	XM_234930.2	XM_234930.2		314649	62651681	XM_234930.2	Edg6_predicted	XP_234930.1	ILMN_1371493	0004560161	S	1719	GGTCTGGGGCAATCTCAACTGGTCATGTAACCCTACAGCCTCGCCCTTCC				7q11	PREDICTED: Rattus norvegicus endothelial differentiation, G-protein-coupled receptor 6 (predicted) (Edg6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655649-S	ILMN_64464	LOC302913	XM_220139.3	XM_220139.3		302913	62655649	XM_220139.3	LOC302913	XP_220139.3	ILMN_1358841	0006400132	S	2652	GCTCTGACAAGAAGCCAGAACTCCCATTCCTGAGGGACTTGAGACCGAGG				10q12	PREDICTED: Rattus norvegicus similar to CG4768-PA (predicted) (LOC302913), mRNA.					
Rattus norvegicus	RefSeq	GI_62665397	ILMN_69631	CPNE7_PREDICTED	XM_341711.2	XM_341711.2		361433	62665397	XM_341711.2	Cpne7_predicted	XP_341712.2	ILMN_1650281	0005360364	S	1713	CATGAGAGAGCATGAGGGTGAACGTCTGTGCCTGGTGGCCCCTCTTTACC				19q12	PREDICTED: Rattus norvegicus copine VII (predicted) (Cpne7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11496270-S	ILMN_267166	CLIP2	NM_021997.1	NM_021997.1		29264	11496270	NM_021997.1	Clip2	NP_068837.1	ILMN_1351548	0000840735	S	4329	CTTAGGATTGGCCCAGGTGGCCTCTGTGAGCACCATTAGACACCAGCAGG	12	+	23291610-23291659	12q12	Rattus norvegicus CAP-GLY domain containing linker protein 2 (Clip2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IDA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence ISS]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence TAS]; A membrane-bounded organelle, specialized for the storage and secretion various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome [goid 42599] [evidence TAS]	Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence TAS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence TAS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IDA]	CLIP-115	CLIP-115
Rattus norvegicus	RefSeq	GI_62667385-S	ILMN_59326	RGD1563568_PREDICTED	XM_229143.4	XM_229143.4		317589	109511210	XM_229143.4	RGD1563568_predicted	XP_229143.4	ILMN_1366747	0003290176	S	1900	GAACTTGAGAAAAGTATTGCTGTGGCCGAAGCTGCCTGTCCTGGCATCAC	X	+	137625386-137625435	Xq36	PREDICTED: Rattus norvegicus similar to serine/threonine protein kinase MST4a (predicted) (RGD1563568_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34853364-S	ILMN_294197	GFI1B_PREDICTED	XM_001079155.1	XM_001079155.1		311832	109469678	XM_001079155.1	Gfi1b_predicted	XP_001079155.1	ILMN_1361876	0000730156	S	768	CACGTGCATTCCCAGGAGCGTAGCTTCGAGTGCCGGATGTGTGGCAAAGC				3p12	PREDICTED: Rattus norvegicus growth factor independent 1B (predicted) (Gfi1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666244-S	ILMN_64850	RGD1562670_PREDICTED	XM_577950.2	XM_577950.2		502470	109509568	XM_577950.2	RGD1562670_predicted	XP_577950.2	ILMN_1366051	0004120647	S	274	CTGGCTGCCACGGACTGTGTTTCCAAAGAATCCTCGAGTTATAGTGACCC	20	+	38390075-38390124	20q12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (predicted) (RGD1562670_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656180-S	ILMN_52728	RGD1564621_PREDICTED	XM_573105.2	XM_573105.2		497918	109488244	XM_573105.2	RGD1564621_predicted	XP_573105.1	ILMN_1373801	0002690358	S	2986	CCGCACTCAGATCAAGCGGGGCAGCACATACTACCTTCATGTCCAGAGCA	10	+	46930704-46930753	10q22	PREDICTED: Rattus norvegicus similar to Smcr8 protein (predicted) (RGD1564621_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981689-S	ILMN_265979	UBE2I	NM_013050.1	NM_013050.1		25573	6981689	NM_013050.1	Ube2i	NP_037182.1	ILMN_1361964	0005890440	S	815	GGAGCTAGTTTCTTCTCGTCCGCTCGGATCGAGGCATGTTCCCCACTGTT	10	-	14510154-14510203	10q12	Rattus norvegicus ubiquitin-conjugating enzyme E2I (Ube2i), mRNA.	A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures [goid 1650] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IDA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence IEA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that modulates the frequency, rate or extent of receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity [goid 10469] [evidence IDA]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33145] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence IMP]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence IDA]; Interacting selectively with Helix Loop Helix, a domain of 40-50 residues that occurs in specific DNA-binding proteins that act as transcription factors. The domain is formed of two amphipathic helices joined by a variable length linker region that can form a loop and it mediates protein dimerization [goid 43398] [evidence IEA]; Interacting selectively with Helix Loop Helix, a domain of 40-50 residues that occurs in specific DNA-binding proteins that act as transcription factors. The domain is formed of two amphipathic helices joined by a variable length linker region that can form a loop and it mediates protein dimerization [goid 43398] [evidence ISS]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence IPI]	MGC105476; UbcE2A	MGC105476; UbcE2A
Rattus norvegicus	RefSeq	GI_62652705-S	ILMN_59996	TMPRSS6_PREDICTED	XM_235768.4	XM_235768.4		315388	109480981	XM_235768.4	Tmprss6_predicted	XP_235768.4	ILMN_1371265	0006650377	S	2337	TGGCAGGGTTGGTTAGCTGGGGCCTGGGTTGTGGCCGACCCAATTTCTTT	7	-	116392313-116392362	7q34	PREDICTED: Rattus norvegicus transmembrane serine protease 6 (predicted) (Tmprss6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666856-S	ILMN_284351	RGD1562366_PREDICTED	XR_007386.1	XR_007386.1		501561	109511792	XR_007386.1	RGD1562366_predicted		ILMN_1364388	0006200402	S	310	GGGAAGGCTATTAGAAGCTACATGGCCAAGGGCTCAGCCAACTAAAGCCC				Xq21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1562366_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650916-S	ILMN_278159	RDH12_PREDICTED	XM_001080897.1	XM_001080897.1		314264	109479557	XM_001080897.1	Rdh12_predicted	XP_001080897.1	ILMN_1365956	0000730441	S	1009	AGCTGAGCGCTTGTGGAATGTCAGCTGTGAGCTTCTAGGAATCCAGTGGG				6q24	PREDICTED: Rattus norvegicus retinol dehydrogenase 12 (predicted) (Rdh12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648305-S	ILMN_62320	LOC500357	XM_575712.1	XM_575712.1		500357	62648305	XM_575712.1	LOC500357	XP_575712.1	ILMN_1352502	0005700184	S	2265	GACAGATTGTGTGTGTTGGATGAGGAGCTGTGTGGAAGTAGGCCAGAGGC					PREDICTED: Rattus norvegicus similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) (LOC500357), mRNA.					
Rattus norvegicus	RefSeq	GI_62644943-S	ILMN_56841	RGD1561113_PREDICTED	XM_575113.2	XM_575113.2		499780	109468050	XM_575113.2	RGD1561113_predicted	XP_575113.2	ILMN_1365552	0003140746	S	489	ACTTGGCTTAGACACCATCTCAGGTACTGGCCTCCAGATCCCCTGGTGGG	3	-	11505442-11505491	3p11	PREDICTED: Rattus norvegicus similar to Hypothetical UPF0184 protein C9orf16 homolog (predicted) (RGD1561113_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638940-S	ILMN_51611	RGD1310257_PREDICTED	XM_218322.4	XM_218322.4		308381	109458211	XM_218322.4	RGD1310257_predicted	XP_218322.3	ILMN_1362840	0006370333	S	2335	AAGTTCCGAGCAGCGTGTGGGCCAGAGTTGGCTGATCTAGTGGCAGAGGA	1	-	73708889-73708938	1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330408A02 gene (predicted) (RGD1310257_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647765-S	ILMN_59443	LOC500250	XM_580053.1	XM_580053.1		500250	62647765	XM_580053.1	LOC500250	XP_580053.1	ILMN_2039279	0003800598	S	112	CGGGATTACCGAAGGGCGGGGCTAGTGCTCTTTAGGTCGACGCTTGAGCG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC083690 (LOC500250), mRNA.					
Rattus norvegicus	RefSeq	GI_62661076-S	ILMN_56689	LOC501949	XM_577376.1	XM_577376.1		501949	62661076	XM_577376.1	LOC501949	XP_577376.1	ILMN_1361696	0001500180	S	304	CAACAGAATGGGGAGCTGATGACCCGGCTGAAGCAGATTTGAGCTCTGAA					PREDICTED: Rattus norvegicus similar to glutaredoxin 1 (thioltransferase) (LOC501949), mRNA.					
Rattus norvegicus	RefSeq	GI_62640969-S	ILMN_275484	LOC682179	XM_001060297.1	XM_001060297.1		682179	109462385	XM_001060297.1	LOC682179	XP_001060297.1	ILMN_1356953	0006200603	S	79	GTGATTACCAGGGACAACGAGGTGAAGGTCAGGGAGGATAAGATCATTGC					PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P1 (LOC682179), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47058975-S	ILMN_284515	TYROBP	NM_212525.1	NM_212525.1		361537	47058975	NM_212525.1	Tyrobp	NP_997690.1	ILMN_1372404	0004560286	S	338	GGCAGTATTACAGATGAACCCACCCTATGCCCACCAACAACCTGATGCCC	1	+	85369034-85369050:85369051-85369083	1q21	Rattus norvegicus Tyro protein tyrosine kinase binding protein (Tyrobp), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]	 [goid 5057] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Karap	Karap
Rattus norvegicus	RefSeq	GI_62660307-S	ILMN_266356	UGT2A3_PREDICTED	XM_001074267.1	XM_001074267.1		289533	109500441	XM_001074267.1	Ugt2a3_predicted	XP_001074267.1	ILMN_1350431	0001570270	S	1118	CACATGGTGGAACGAACGGGATCTACGAAGCCATTTACCACGGGGTCCCT				14p21	PREDICTED: Rattus norvegicus UDP glucuronosyltransferase 2 family, polypeptide A3 (predicted) (Ugt2a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638485-S	ILMN_275489	MTRF1L	NM_001025723.1	NM_001025723.1		361473	71043903	NM_001025723.1	Mtrf1l	NP_001020894.1	ILMN_1355100	0004540687	S	656	GTACCAAAGACAGAGAGGCAAGGCCGCATCCACACCAGCACCATGACGGT	1	-	36510642-36510691	1p11	Rattus norvegicus mitochondrial translational release factor 1-like (Mtrf1l), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code) [goid 6415] [evidence IEA]	A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site [goid 16149] [evidence IEA]	MGC116100	MGC116100
Rattus norvegicus	RefSeq	GI_62638483-S	ILMN_275489	MTRF1L	NM_001025723.1	NM_001025723.1		361473	71043903	NM_001025723.1	Mtrf1l	NP_001020894.1	ILMN_1366805	0001450687	S	858	CTGAATGCCAGCAAGAAAGATCTCAGCTGAAGAACAGGGAGCTGGCTATG	1	-	36507574-36507623	1p11	Rattus norvegicus mitochondrial translational release factor 1-like (Mtrf1l), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code) [goid 6415] [evidence IEA]	A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site [goid 16149] [evidence IEA]	MGC116100	MGC116100
Rattus norvegicus	RefSeq	GI_27545369-S	ILMN_286185	LOC286960	NM_173301.1	NM_173301.1		286960	27545369	NM_173301.1	LOC286960	NP_775423.1	ILMN_1369897	0004540017	S	648	CAGGGCATTGTCTCCTGGGGTTCAGTCTGTGCAATGAGAGGGAAGCCTGG	4	-	68597005-68597054	4q22	Rattus norvegicus preprotrypsinogen IV (LOC286960), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664438-S	ILMN_266686	RGD1561039_PREDICTED	XM_001059494.1	XM_001059494.1		498870	109507355	XM_001059494.1	RGD1561039_predicted	XP_001059494.1	ILMN_1369231	0002350687	S	265	GGCCCCTTGGAAGATTCTCTGTTCTGGGGTTACAGCGAGCGGCTTTGCCA				18q12.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700065I17 (predicted) (RGD1561039_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758255-S	ILMN_281694	ENTPD6	NM_053498.1	NM_053498.1		85260	16758255	NM_053498.1	Entpd6	NP_445950.1	ILMN_1368350	0001400707	S	2116	GCAGAGCATGTGGGTGTGAGCAGAGCTATGAGAATGTTCAGGGCTGCGTG	3	+	141407535-141407584	3q41	Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 6 (Entpd6), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the reaction: guanosine 5'-triphosphate,3'-diphosphate + H2O = guanosine 5'-diphosphate,3'-diphosphate + phosphate [goid 8894] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644287-S	ILMN_263277	RGD1304822_PREDICTED	XM_001075415.1	XM_001075415.1		295428	109467559	XM_001075415.1	RGD1304822_predicted	XP_001075415.1	ILMN_1374769	0000070400	S	2402	CAGCTTGAGAGATGGGGTTGCAGTTGCCTTTGATTAGAGCTGTGTGGTGC				2q42	PREDICTED: Rattus norvegicus similar to KIAA1627 protein (predicted) (RGD1304822_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641952-S	ILMN_66673	NALP6	XM_577848.2	XM_577848.2		171390	109459601	XM_577848.2	Nalp6	XP_577848.2	ILMN_1366562	0006980546	S	2539	TCAGCCCTGAAGCACCCTAAATGTGGCCTAAAGACCCTCAGTCTGACTTC	1	+	201091099-201091139:201091562-201091570	1q41	PREDICTED: Rattus norvegicus NACHT, leucine rich repeat and PYD containing 6 (Nalp6), mRNA.					
Rattus norvegicus	RefSeq	GI_62639858-S	ILMN_67650	LOC502327	XM_577792.1	XM_577792.1		502327	62639858	XM_577792.1	LOC502327	XP_577792.1	ILMN_1356742	0002370687	S	14	TCGACTGTGTGTCTTTCAGCGTAGTCTCCTGAGCCCGAAGCCTGGAGCGC				1q22	PREDICTED: Rattus norvegicus similar to CDC42 small effector 2 (LOC502327), mRNA.					
Rattus norvegicus	RefSeq	GI_62718845-S	ILMN_295305	LOC680736	XR_005855.1	XR_005855.1		680736	109478416	XR_005855.1	LOC680736		ILMN_1364835	0006400162	S	64	GCCTGGACTCGAAAAACCAGAAACAGCTGGAAGAGGAGGAACGGAAGATG	6	+	103615858-103615907	6q24	PREDICTED: Rattus norvegicus hypothetical protein LOC680736 (LOC680736), mRNA.					
Rattus norvegicus	RefSeq	GI_6978564-S	ILMN_297106	AZGP1	NM_012826.1	NM_012826.1		25294	6978564	NM_012826.1	Azgp1	NP_036958.1	ILMN_1370112	0002970484	S	978	AGTCACTGTCACCAGCAAGCCAGCAAGTCTCCAAGGAATGGGTGTGGGCC	12	+	17498681-17498730	12q11	Rattus norvegicus alpha-2-glycoprotein 1, zinc-binding (Azgp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		Zna2gp; ZA2GA; MGC124966	Zna2gp; ZA2GA; MGC124966
Rattus norvegicus	RefSeq	GI_62648990-S	ILMN_51538	LOC500459	XM_580069.1	XM_580069.1		500459	62648990	XM_580069.1	LOC500459	XP_580069.1	ILMN_1371308	0003360070	S	691	GCGTGGGAGGAGAAGTCGTTTTCTTCAAAAACCTTGGAGCTGTTAAGCTG					PREDICTED: Rattus norvegicus LOC500459 (LOC500459), mRNA.					
Rattus norvegicus	RefSeq	GI_62650935-S	ILMN_61883	RGD1559848_PREDICTED	XM_229691.3	XM_229691.3		317032	109478426	XM_229691.3	RGD1559848_predicted	XP_229691.1	ILMN_1371039	0006980131	S	619	GGAAGAGGAAGACAAGCGTGAGACTGTGGCCTTGCTGGAGGAGGCTCGTT	6	-	103984816-103984865	6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900016D05 (predicted) (RGD1559848_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641698	ILMN_271669	RGD1563670_PREDICTED	XM_001070324.1	XM_001070324.1		499298	109463308	XM_001070324.1	RGD1563670_predicted	XP_001070324.1	ILMN_1650964	0003870377	S	613	CCTCAAGGCTCTGTTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGA				1q42	PREDICTED: Rattus norvegicus similar to L-CaBP2 (predicted) (RGD1563670_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663399-S	ILMN_52400	TBC1D7_PREDICTED	XM_341510.3	XM_341510.3		361227	109504775	XM_341510.3	Tbc1d7_predicted	XP_341511.2	ILMN_1367341	0006510358	S	694	AAAGGTGCTTCGCGGGATGCCTACCCGAGTCCAGTTTACAGAGGGTCTGG	17	+	27374627-27374669:27376207-27376213	17p12	PREDICTED: Rattus norvegicus TBC1 domain family, member 7 (predicted) (Tbc1d7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652527-S	ILMN_50628	LOC503156	XM_578680.1	XM_578680.1		503156	62652527	XM_578680.1	LOC503156	XP_578680.1	ILMN_1369205	0000670184	S	481	TTCTCGCTGAAACCTTTCGCCTGCCTCCTCACACGCCAAGGCTCATTTCT				7q33	PREDICTED: Rattus norvegicus similar to Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome chain 13) (Proteasome component C10-II) (LOC503156), mRNA.	A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644488-S	ILMN_281017	LOC687523	XR_009266.1	XR_009266.1		687523	109467740	XR_009266.1	LOC687523		ILMN_1363063	0003990324	S	1599	GGAGATGGAAAGGGAGAACATTCTGAGAGATCAGGAGAGGGTTCTGGACC					PREDICTED: Rattus norvegicus similar to guanylate nucleotide binding protein 4 (LOC687523), mRNA.					
Rattus norvegicus	RefSeq	GI_62660294	ILMN_263038	RIPX	XM_001073390.1	XM_001073390.1		360921	109500413	XM_001073390.1	Ripx	XP_001073390.1	ILMN_1651167	0001940528	S	1685	CCCAGAAGCCGGAGCCCCGAATGGATGGGAAGCACAGAATTCAAGAGGAC				14p22	PREDICTED: Rattus norvegicus rap2 interacting protein x (Ripx), mRNA.					
Rattus norvegicus	RefSeq	GI_62662000-S	ILMN_262883	LOC684886	XM_001072334.1	XM_001072334.1		684886	109502732	XM_001072334.1	LOC684886	XP_001072334.1	ILMN_1361538	0005700593	S	971	CAGGGAGAAGGAAAGCAGTGGAACACGGAACAGGCCAGCAGCATTGTGGG					PREDICTED: Rattus norvegicus similar to Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (LOC684886), mRNA.					
Rattus norvegicus	RefSeq	GI_62652778-S	ILMN_269109	APOL2_PREDICTED	XM_001075828.1	XM_001075828.1		315111	109482533	XM_001075828.1	Apol2_predicted	XP_001075828.1	ILMN_1366261	0003610403	S	951	GTACAAGGGCGCAAAAGCAAAGTCTGCCGAGGAGTTGAGGCAGCAGGCTC				7q34	PREDICTED: Rattus norvegicus apolipoprotein L, 2 (predicted) (Apol2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651487-S	ILMN_66603	LOC503066	XM_578586.1	XM_578586.1		503066	62651487	XM_578586.1	LOC503066	XP_578586.1	ILMN_1353443	0001850497	S	181	GAAAAGGTCTGGAGTGGATGGGAGTAATGTGGAGTGATGGAGACACATCA				6q32	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC503066), mRNA.					
Rattus norvegicus	RefSeq	GI_57012377-S	ILMN_291187	KRT86	NM_001008810.1	NM_001008810.1		407760	57012377	NM_001008810.1	Krt86	NP_001008810.1	ILMN_1365615	0004760039	S	1438	AGCGGAGGCTGTAAGAAGTGCGAGGCCACAAAGCTGCAAGCCACTGCCAT	7	+	140228709-140228758	7q36	Rattus norvegicus keratin 86 (Krt86), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641568-S	ILMN_69573	LOC361672	XM_341956.2	XM_341956.2		361672	62641568	XM_341956.2	LOC361672	XP_341957.2	ILMN_1358885	0005900465	S	3557	GAAACAGGCATGGGCAGCTGATGAGAAGGAGGAGCCCTACACCAATGCCC				1q41	PREDICTED: Rattus norvegicus similar to kinase non-catalytic C-lobe domain (KIND) containing 1 isoform b (LOC361672), mRNA.					
Rattus norvegicus	RefSeq	GI_62650596-S	ILMN_67675	LOC503021	XM_578538.1	XM_578538.1		503021	62650596	XM_578538.1	LOC503021	XP_578538.1	ILMN_1365658	0006450131	S	246	GCCCTGGGGGAAAAGACTGCCCTTGATGGAGATGATGAAGCCCAACAGAC					PREDICTED: Rattus norvegicus similar to calmodulin 1 (LOC503021), mRNA.					
Rattus norvegicus	RefSeq	GI_16758285-S	ILMN_292413	RHOQ	NM_053522.1	NM_053522.1		85428	16758285	NM_053522.1	Rhoq	NP_445974.1	ILMN_1357763	0001340139	S	3564	GTTGAGGGGAATCCTGCACTCTAACAGCCTCTCTTTGCTAACGTATGCCC	6	+	10449177-10449226	6q12	Rattus norvegicus ras homolog gene family, member Q (Rhoq), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Tc10	Tc10
Rattus norvegicus	RefSeq	GI_47576876-S	ILMN_286522	OLR811	NM_001000848.1	NM_001000848.1		405138	47576876	NM_001000848.1	Olr811	NP_001000848.1	ILMN_1361868	0002480014	S	829	GCCATTGTGACTCCAGCCCTCAATCCTTTCATTTACTGCCTAAGGAACCG	4	+	70736331-70736380	4q23	Rattus norvegicus olfactory receptor 811 (Olr811), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr811	Olr811
Rattus norvegicus	RefSeq	GI_62646150	ILMN_47913	LOC502667	XM_578163.1	XM_578163.1		502667	62646150	XM_578163.1	LOC502667	XP_578163.1	ILMN_1650365	0000380725	S	463	TCCATCTGTGACCACAGCATTTGGGATGACTTATGTATACAGCTTTGCCG					PREDICTED: Rattus norvegicus similar to hypothetical protein, expressed (LOC502667), mRNA.					
Rattus norvegicus	RefSeq	GI_62650754-S	ILMN_52882	LOC299105	XM_216715.3	XM_216715.3		299105	62650754	XM_216715.3	LOC299105	XP_216715.3	ILMN_1353395	0001450050	S	412	TCGGGGTTCTCTGGTGCTTGGCTATGAGGAAGGTGAACAAGAAGTTGGAG				6q24	PREDICTED: Rattus norvegicus similar to voltage-dependent anion channel 1 (LOC299105), mRNA.					
Rattus norvegicus	RefSeq	GI_62657758-S	ILMN_295347	RGD1559516_PREDICTED	XR_007535.1	XR_007535.1		498068	109494192	XR_007535.1	RGD1559516_predicted		ILMN_1362396	0000670242	S	503	CAATCATCCCAGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCC				11q12	PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (predicted) (RGD1559516_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649889-S	ILMN_52712	ELA3B_PREDICTED	XM_216566.4	XM_216566.4		298567	109475689	XM_216566.4	Ela3b_predicted	XP_216566.4	ILMN_1364459	0006660300	S	635	GCGATATCCAGTCTGGCTGCAACGGTGACTCTGGAGGACCCCTCAACTGT	5	-	156179740-156179767:156181386-156181407	5q36	PREDICTED: Rattus norvegicus elastase 3B, pancreatic (predicted) (Ela3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640742-S	ILMN_52177	ISG20L1_PREDICTED	XM_341874.3	XM_341874.3		361594	109458937	XM_341874.3	Isg20l1_predicted	XP_341875.3	ILMN_1362780	0002760093	S	2019	GCTGGGCAGTAGCCATTGTGGGTTGAAGGGTGGTGGAACTACTAGCTGGG	1	+	134625248-134625297	1q31	PREDICTED: Rattus norvegicus interferon stimulated exonuclease gene 20-like 1 (predicted) (Isg20l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657524-S	ILMN_48125	LOC363713	XM_343992.2	XM_343992.2		363713	62657524	XM_343992.2	LOC363713	XP_343993.2	ILMN_1365249	0002510324	S	138	GAGCAAGCATCGGTGAACGAGCCCTTAGAGCCTGCTGCACACCGGATCAA					PREDICTED: Rattus norvegicus similar to Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (LOC363713), mRNA.					
Rattus norvegicus	RefSeq	GI_62638586-S	ILMN_56921	RGD1565209_PREDICTED	XM_574322.2	XM_574322.2		499033	109457821	XM_574322.2	RGD1565209_predicted	XP_574322.1	ILMN_1368416	0006380348	S	683	GACCCTGAGAACACAATTTGGAAATCTCAGGCTTAGTGGAATGGGACGTG	1	-	50380390-50380410:50382507-50382535	1q12	PREDICTED: Rattus norvegicus similar to kinesin family member 25 isoform 1 (predicted) (RGD1565209_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576682-S	ILMN_290868	OLR1704	NM_001000271.1	NM_001000271.1		294155	47576682	NM_001000271.1	Olr1704	NP_001000271.1	ILMN_1355456	0002230551	S	422	GCACTTGGGCTGTGGCAGCTGTGTGGTTAAGTGGAAGCATCTCAGGAACA	20	+	783501-783550	20p12	Rattus norvegicus olfactory receptor 1704 (Olr1704), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr20-783080-784018_ORF; Olr1704	ratchr20-783080-784018_ORF; Olr1704
Rattus norvegicus	RefSeq	GI_16163667-S	ILMN_279398	HPS1	NM_040669.1	NM_040669.1		114638	16163667	NM_040669.1	Hps1	NP_414541.1	ILMN_1372240	0000630110	S	2571	CCTACCTCAGGGTGGTCAGGAGGATTGCTGGACATGCTCAGATGCTCAAT	1	+	248134380-248134429	1q54	Rattus norvegicus Hermansky-Pudlak syndrome 1 homolog (human) (Hps1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]	Hps	Hps
Rattus norvegicus	RefSeq	GI_57526867-S	ILMN_301565	KNG1L1	NM_001009628.1	NM_001009628.1		288001	57526867	NM_001009628.1	Kng1l1	NP_001009628.1	ILMN_1366281	0002030497	S	874	GAAATGCTTTGGCTGCCCCAAGAACATACCTGTAGACAGCCCGGAGCTCA	11	-	80015906-80015955	11q23	Rattus norvegicus kininogen 1-like 1 (Kng1l1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]	 [goid 4869] [evidence IEA]	kininogen	kininogen
Rattus norvegicus	RefSeq	GI_62641946-S	ILMN_271972	LOC502372	NM_001025058.1	NM_001025058.1		502372	68163540	NM_001025058.1	LOC502372	NP_001020229.1	ILMN_1367354	0001980088	S	943	AGCCCTTAGAAGCCCACAAGGAGACAGTCCAAGAGCGCCCATCAAGCAGG	1	-	200930798-200930847	1q41	Rattus norvegicus hypothetical protein LOC502372 (LOC502372), mRNA.	A structural unit of the synaptonemal complex found between the lateral elements [goid 801] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641919-S	ILMN_65135	LOC499327	XM_574633.1	XM_574633.1		499327	62641919	XM_574633.1	LOC499327	XP_574633.1	ILMN_1361351	0001690288	S	1277	TGTCATCAGTGTGCTGCAGGAGAGCCAGCTCAGTGCTCAGGGTTTAAGTC					PREDICTED: Rattus norvegicus similar to chromosome 9 open reading frame 65 (LOC499327), mRNA.					
Rattus norvegicus	RefSeq	GI_62664024-S	ILMN_51965	RGD1565904_PREDICTED	XM_226176.4	XM_226176.4		291795	109506289	XM_226176.4	RGD1565904_predicted	XP_226176.3	ILMN_1355754	0004570619	S	537	CTGAACTTCTGGGAAACCAGACTTGCTGCTTAGTCACTCACGTCATGGAC	18	-	1533945-1533991:1533992-1533994	18p13	PREDICTED: Rattus norvegicus similar to polymerase (RNA) II (DNA directed) polypeptide H (predicted) (RGD1565904_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27545397-S	ILMN_277991	VOM2R40	NM_173317.1	NM_173317.1		286983	27545397	NM_173317.1	Vom2r40	NP_775439.1	ILMN_1370687	0003190278	S	2289	GTATCAAGTGTCTAAATGATCAGTATGCCAATCCTGGAGGAACTCGCTGC	1	-	141603498-141603547	1q32	Rattus norvegicus vomeronasal 2 receptor, 40 (Vom2r40), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Vom2r40	Vom2r40
Rattus norvegicus	RefSeq	GI_62646182-S	ILMN_49341	CST10_PREDICTED	XM_345450.2	XM_345450.2		366219	62646182	XM_345450.2	Cst10_predicted	XP_345451.2	ILMN_1353870	0003290133	S	517	CCACTATCACTGGCAAGGGTACAGCTGGCCTGGAGCAAAGTTGGCGGCCA				3q41	PREDICTED: Rattus norvegicus cystatin 10 (chondrocytes) (predicted) (Cst10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27715098-S	ILMN_269088	RGD1561150_PREDICTED	XM_001057166.1	XM_001057166.1		298241	109476769	XM_001057166.1	RGD1561150_predicted	XP_001057166.1	ILMN_1363521	0002640017	S	20	GGAAGTCTCGTCTGCTCCCTGACAGAGTATTGGCTGAAAGGAGTGTTGTG				5q33	PREDICTED: Rattus norvegicus similar to CPN10-like protein (predicted) (RGD1561150_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52851384-S	ILMN_287449	KLK1	NM_001005382.1	NM_001005382.1		292855	52851384	NM_001005382.1	Klk1	NP_001005382.1	ILMN_1350971	0000870039	S	663	TCAAGGCATCACGTCCTGGAGCTCTGTCCCATGTGGCGAAACCAATAGGC	1	-	94355825-94355874	1q22	Rattus norvegicus kallikrein 1 (Klk1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response [goid 2675] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	RSKG-3; Klk1c12	RSKG-3; Klk1c12
Rattus norvegicus	RefSeq	GI_62661856-S	ILMN_64749	TCRA-V22.1	XM_224084.3	XM_224084.3		171351	62661856	XM_224084.3	Tcra-v22.1	XP_224084.3	ILMN_1365028	0003140100	S	3071	CTCAGGCACTTATTTCTGGGTGAGTAGCCAGCAGGAGAGACATGACCAGC				15p14	PREDICTED: Rattus norvegicus T-cell receptor alpha, variable 22.1 (Tcra-v22.1), mRNA.					
Rattus norvegicus	RefSeq	GI_62651090-S	ILMN_69425	LOC314328	XM_234428.3	XM_234428.3		314328	62651090	XM_234428.3	LOC314328	XP_234428.3	ILMN_1372895	0004920184	S	1510	GCAGAGACAGAAGGAACGGAAGTCTAGGGGCAGCCTGTGCTACATACCTG				6q31	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 166B (LOC314328), mRNA.					
Rattus norvegicus	RefSeq	GI_13929163-S	ILMN_263019	OMD	NM_031817.1	NM_031817.1		83717	13929163	NM_031817.1	Omd	NP_114005.1	ILMN_1375112	0002340020	S	1185	GATGAGGAAGAGGAAGAGGAAGACGACAGTCAGGACCACACTCTTGAGGG	17	-	21015470-21015519	17p14	Rattus norvegicus osteomodulin (Omd), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652803-S	ILMN_275880	CSDC2	XM_001077363.1	XM_001077363.1		266600	109482617	XM_001077363.1	Csdc2	XP_001077363.1	ILMN_1364207	0007000068	S	1940	CCCAACTTGGCCTAGCACCCTTTGCACAGAGCCCAGCAACTTAGAGCTGC				7q34	PREDICTED: Rattus norvegicus cold shock domain containing C2, RNA binding (Csdc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IPI]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638740-S	ILMN_64427	LOC502266	XM_577727.1	XM_577727.1		502266	62638740	XM_577727.1	LOC502266	XP_577727.1	ILMN_1356691	0004120102	S	560	CTTCATTCTAGAGTTGAGAAGACAGCAACTGATCCCCCTCAGGCCAGACC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502266), mRNA.					
Rattus norvegicus	RefSeq	GI_20302108-S	ILMN_301435	SLC22A25	NM_138908.1	NM_138908.1		192273	20302108	NM_138908.1	Slc22a25	NP_620263.1	ILMN_1351405	0001400484	S	2280	GGCGAATGGCCTATGCCAGGGCAGGAGAGGAAAGGTAGATATTTCATTTG	1	-	211122381-211122430	1q43	Rattus norvegicus solute carrier family 22, member 25 (Slc22a25), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Ust1r; Ust1	Ust1r; Ust1
Rattus norvegicus	RefSeq	GI_25742665-S	ILMN_284432	PDLIM3	NM_053650.1	NM_053650.1		114108	25742665	NM_053650.1	Pdlim3	NP_446102.1	ILMN_1352755	0000610348	S	1218	ACCGGCGGATGATAAGGAGGACTTCAAGCAGGAGGAGTGCGAAGGTCACC	16	-	49637375-49637424	16q11	Rattus norvegicus PDZ and LIM domain 3 (Pdlim3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]	Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence IEA]; Interacting selectively with actinin, any member of a family of proteins that crosslink F-actin [goid 42805] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Alp; Actn2lp	Alp; Actn2lp
Rattus norvegicus	RefSeq	GI_62663669-S	ILMN_281926	PAPD1_PREDICTED	XM_001056452.1	XM_001056452.1		307050	109505889	XM_001056452.1	Papd1_predicted	XP_001056452.1	ILMN_1367083	0003060408	S	1752	CAGTGGAAAGAGAGCCGTCAGTACACAGGCGTGATGGTAGCCCTTTGGAC				17q12.1	PREDICTED: Rattus norvegicus PAP associated domain containing 1 (predicted) (Papd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644688-S	ILMN_279584	RGD1563019_PREDICTED	XM_001077011.1	XM_001077011.1		499744	109469504	XM_001077011.1	RGD1563019_predicted	XP_001077011.1	ILMN_1349998	0006350411	S	479	CCACCATCCTGAGCCAATGAAGCCATTCCTGTTTTACCACACCCTGACAG				3p13	PREDICTED: Rattus norvegicus similar to IL-1F9 (predicted) (RGD1563019_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666797-S	ILMN_49638	LOC297970	XM_216369.3	XM_216369.3		297970	62666797	XM_216369.3	LOC297970	XP_216369.3	ILMN_1371290	0003060463	S	4376	GACTGTGGCAGAGATGGAAGTTTCCTTGCAAAACCAGACTGTGCTCACAC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC297970), mRNA.					
Rattus norvegicus	RefSeq	GI_34882921-S	ILMN_268332	LOC301132	XM_001059337.1	XM_001059337.1		301132	109486580	XM_001059337.1	LOC301132	XP_001059337.1	ILMN_1355157	0003130044	S	365	CAGGGCTGGAGAAGGGCAATCTGCGTATCCATCAAGACGGCATCTACAGG					PREDICTED: Rattus norvegicus similar to Tumor necrosis factor ligand superfamily member 7 (CD27 ligand) (CD27-L) (CD70 antigen) (LOC301132), mRNA.					
Rattus norvegicus	RefSeq	GI_62667171-S	ILMN_292408	PCDH19_PREDICTED	XM_001067802.1	XM_001067802.1		317183	109512316	XM_001067802.1	Pcdh19_predicted	XP_001067802.1	ILMN_1366065	0002450373	S	5228	CTGTGACAATCCCTCTCGTTTCAGCAGGCAGTAGGGGTGTTCAGTTGGAG				Xq34	PREDICTED: Rattus norvegicus protocadherin 19 (predicted) (Pcdh19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659629-S	ILMN_60099	RGD1563245_PREDICTED	XM_222837.4	XM_222837.4		289180	109498127	XM_222837.4	RGD1563245_predicted	XP_222837.4	ILMN_1367336	0001940341	S	1575	CTTATTTGGGGAGGAGGCTCTGCCAGGGGTCTTGTTCACAGCACGGACAG	13	+	81074737-81074786	13q23	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 161 (predicted) (RGD1563245_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591883-S	ILMN_277857	ITGA1	NM_030994.1	NM_030994.1		25118	13591883	NM_030994.1	Itga1	NP_112256.1	ILMN_1374387	0005220082	S	3648	CCTTCCGACCTGAGTCAAGTGAATGTCTCGCTCCTCCTGTGGAAACCGAC				2q14	Rattus norvegicus integrin alpha 1 (Itga1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IMP]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence IEA]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence IMP]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_55742751-S	ILMN_292074	CD47	NM_019195.2	NM_019195.2		29364	55742751	NM_019195.2	Cd47	NP_062068.1	ILMN_1370921	0000460136	S	1620	GCGTTGCCATCGTTCACACACACCCCCTTTGACATACAGCGCACCCAGGT	11	-	52098627-52098676	11q21	Rattus norvegicus Cd47 molecule (Cd47), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which a microorganism (or other particulate material) is rendered more susceptible to phagocytosis by coating with an opsonin, a blood serum protein such as a complement component or antibody [goid 8228] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IDA]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93490; Itgp	MGC93490; Itgp
Rattus norvegicus	RefSeq	GI_25742662-S	ILMN_270933	MYT1L	NM_053888.1	NM_053888.1		116668	25742662	NM_053888.1	Myt1l	NP_446340.1	ILMN_1363757	0001780070	S	4320	GCAGGCTGTGAGAGGAATTCAGGTCTGAACAGCTGCTCTAGTGGTGACTC	6	+	47827858-47827886:47827887-47827907	6q16	Rattus norvegicus myelin transcription factor 1-like (Myt1l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nzf-1; Nzf1; Nztf1	Nzf-1; Nzf1; Nztf1
Rattus norvegicus	RefSeq	GI_62655270-S	ILMN_271217	MRPL44	NM_001031650.1	NM_001031650.1		301552	72255534	NM_001031650.1	Mrpl44	NP_001026820.1	ILMN_1364781	0001780181	S	861	CGCAGAGGGACCTGGGGAAACTGTACTTGTTGCAGAGGAAGAAGCGGCAC	9	+	79078087-79078136	9q34	Rattus norvegicus mitochondrial ribosomal protein L44 (Mrpl44), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt [goid 4525] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112705	MGC112705
Rattus norvegicus	RefSeq	GI_62650392-S	ILMN_274433	RGD1560110_PREDICTED	XR_008486.1	XR_008486.1		366565	109479048	XR_008486.1	RGD1560110_predicted		ILMN_1354393	0001240711	S	1174	CAGTGGCTGAAGGAGGAACGGTGGTATCGAGAAGCCTTAGTTAGGGGGAG				6q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930548H24 (predicted) (RGD1560110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650406	ILMN_268612	TRIM54	NM_001013217.1	NM_001013217.1		362708	61557309	NM_001013217.1	Trim54	NP_001013235.1	ILMN_1649970	0004670136	S	1120	CTCTGTGATCGTGGAGCACGTGGCGGAAATGTTGCGGACCATCGACTTCC				6q14	Rattus norvegicus tripartite motif-containing 54 (Trim54), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rnf30	Rnf30
Rattus norvegicus	RefSeq	GI_34874259-S	ILMN_65780	LOC360446	XM_346849.1	XM_346849.1		360446	34874259	XM_346849.1	LOC360446	XP_346850.1	ILMN_1369666	0005270022	S	1206	CATATAGTCCCTCTGTATTGGCCAATCACCTTTTATTTAGTTCTACCTCC					PREDICTED: Rattus norvegicus hypothetical LOC360446 (LOC360446), mRNA.					
Rattus norvegicus	RefSeq	GI_55742750-S	ILMN_288979	CDH13	NM_138889.2	NM_138889.2		192248	55742750	NM_138889.2	Cdh13	NP_620244.1	ILMN_1366675	0005420017	S	3092	CACAGTCCTACAGTCCTTGTGGTGACACAGATCATGGTGGAGACCCTCTC	19	+	49574834-49574883	19q12	Rattus norvegicus cadherin 13 (Cdh13), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IMP]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IEA]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence IEA]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence ISS]; The extension of new blood vessels from existing capillaries into avascular tissues resulting from the proliferation of blood vessel endothelial cells [goid 2040] [evidence IEA]; The extension of new blood vessels from existing capillaries into avascular tissues resulting from the proliferation of blood vessel endothelial cells [goid 2040] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence NAS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence TAS]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rac family of proteins switching to a GTP-bound active state [goid 16601] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rac family of proteins switching to a GTP-bound active state [goid 16601] [evidence ISS]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence IEA]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 42058] [evidence IEA]; Any process that modulates the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 42058] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence IEA]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IEA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50927] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50927] [evidence ISS]; Any process by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a membrane [goid 51668] [evidence IEA]; Any process by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a membrane [goid 51668] [evidence ISS]; A series of molecular signals mediated by the detection of low density lipoprotein [goid 55096] [evidence IEA]; A series of molecular signals mediated by the detection of low density lipoprotein [goid 55096] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence IEA]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IEA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence ISS]; Interacting selectively with adiponectin, a protein hormone produced by adipose tissue that modulates a number of metabolic processes, including glucose regulation and fatty acid catabolism [goid 55100] [evidence IEA]; Interacting selectively with adiponectin, a protein hormone produced by adipose tissue that modulates a number of metabolic processes, including glucose regulation and fatty acid catabolism [goid 55100] [evidence ISS]	MGC93172; Cdht; T-cadherin; Tcad	MGC93172; Cdht; T-cadherin; Tcad
Rattus norvegicus	RefSeq	GI_62641277-S	ILMN_275971	EIF3S8	XM_001079906.1	XM_001079906.1		293484	109462863	XM_001079906.1	Eif3s8	XP_001079906.1	ILMN_1374766	0002570537	S	2842	GTGATGCACCGTACTGAGCCCACTGCCCAACAGAACTTGGCTCTGCAGCT				1q36	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 3, subunit 8, 110kDa (Eif3s8), mRNA.					
Rattus norvegicus	RefSeq	GI_62666613-S	ILMN_269631	LOC679890	XM_001055091.1	XM_001055091.1		679890	109510493	XM_001055091.1	LOC679890	XP_001055091.1	ILMN_1357200	0002190176	S	577	CTGGCAAGGGCATCGGCAATACATTCAGTCAGGTAGTGAAGCCCCGAGTC	X	-	26841235-26841254:26841772-26841801	Xq13	PREDICTED: Rattus norvegicus similar to G patch domain and KOW motifs, transcript variant 3 (LOC679890), mRNA.					
Rattus norvegicus	RefSeq	GI_62666612-S	ILMN_269631	LOC679890	XM_001055091.1	XM_001055091.1		679890	109510493	XM_001055091.1	LOC679890	XP_001055091.1	ILMN_1362852	0007100100	S	1403	ACAGAGTCACGCTATGGTCCAGCTTGGGAGAGAGAATCAGGTGGTGGAGC	X	-	26834912-26834961	Xq13	PREDICTED: Rattus norvegicus similar to G patch domain and KOW motifs, transcript variant 3 (LOC679890), mRNA.					
Rattus norvegicus	RefSeq	GI_62646331-S	ILMN_270928	RGD1305754_PREDICTED	XM_001069672.1	XM_001069672.1		296349	109471259	XM_001069672.1	RGD1305754_predicted	XP_001069672.1	ILMN_1373714	0000540095	S	1878	GGCCTTGGGGGCTGCTCAAGTTCTGTTAGGTTTCTGCTTGGAAAGATGAC				3q42	PREDICTED: Rattus norvegicus similar to 3110080A02Rik protein (predicted) (RGD1305754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657766-S	ILMN_294592	ARL6_PREDICTED	XM_001056633.1	XM_001056633.1		363760	109494182	XM_001056633.1	Arl6_predicted	XP_001056633.1	ILMN_1361517	0003850433	S	1576	GGTGTTGCAACCGCCAAGCATTGTCTGAGGCCAACTAAACTGAGTTCATC				11q12	PREDICTED: Rattus norvegicus ADP-ribosylation factor-like 6 (predicted) (Arl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652422-S	ILMN_68463	LOC299907	XM_216920.3	XM_216920.3		299907	62652422	XM_216920.3	LOC299907	XP_216920.3	ILMN_1364547	0006180010	S	2911	CATCGGTGGAGCCAGACTGTGCCAAGTATCAAAAAATGAAAACTCTTGCC				7q31	PREDICTED: Rattus norvegicus similar to Ext1 (LOC299907), mRNA.					
Rattus norvegicus	RefSeq	GI_62665148-S	ILMN_57071	E2F4_PREDICTED	XM_226441.3	XM_226441.3		307794	62665148	XM_226441.3	E2f4_predicted	XP_226441.3	ILMN_1360171	0003130037	S	1105	AGAGCTGTCAGAAATCTTCGACCCCACAAGAGAGTGCATGAGCTCCGAGC					PREDICTED: Rattus norvegicus E2F transcription factor 4 (predicted) (E2f4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758477-S	ILMN_279612	AKAP1	NM_053665.1	NM_053665.1		114124	16758477	NM_053665.1	Akap1	NP_446117.1	ILMN_1366414	0006420288	S	2370	ACCCGAGGCAGACGCAGCCATGAGTGAGATGACAGGCAATACAGCACTGC	10	-	77263551-77263600	10q26	Rattus norvegicus A kinase (PRKA) anchor protein 1 (Akap1), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	Akap84	Akap84
Rattus norvegicus	RefSeq	GI_62648026-S	ILMN_283382	TADA3L	NM_001025734.1	NM_001025734.1		362414	71043893	NM_001025734.1	Tada3l	NP_001020905.1	ILMN_1371248	0001980746	S	1702	GCTGAAACACTCTCAGGCCACTCAGCCGAGCTTTGTGCAGCCAGTGTGCA	4	-	149247992-149248041	4q42	Rattus norvegicus transcriptional adaptor 3 (NGG1 homolog, yeast)-like (Tada3l), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 30374] [evidence ISS]	MGC114459	MGC114459
Rattus norvegicus	RefSeq	GI_56605647-S	ILMN_264407	TFIP11	NM_001008291.1	NM_001008291.1		288718	56605647	NM_001008291.1	Tfip11	NP_001008292.1	ILMN_1365476	0002260152	S	3286	GCACTTTTCAGTTCCACGGGTAGTGGGAATGCTGGGCTCACCCCGAGGGT	19	+	14319594-14319643	19p11	Rattus norvegicus tuftelin interacting protein 11 (Tfip11), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6981055-S	ILMN_262767	HTR1D	NM_012852.1	NM_012852.1		25323	6981055	NM_012852.1	Htr1d	NP_036984.1	ILMN_2039156	0000130382	S	923	TCATCTGCTGGCTGCCTTTCTTTGTGGTATCCTTGGTCCTCCCCATCTGC	5	+	155189591-155189640	5q36	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 1D (Htr1d), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence ISS]; Interacting selectively with serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 51378] [evidence ISS]	5HT1D	5HT1D
Rattus norvegicus	RefSeq	GI_62660099-S	ILMN_274782	LRRC8C	NM_001037179.1	NM_001037179.1		289443	81295328	NM_001037179.1	Lrrc8c	NP_001032256.1	ILMN_1363263	0004070538	S	2614	GCCGGGCTGGTTGTGGAAGACGCTCTGTTTGAGACTCTGCCCTCAGATGT	14	-	5306418-5306467	14p22	Rattus norvegicus leucine rich repeat containing 8 family, member C (Lrrc8c), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1306585; MGC112653	RGD1306585; MGC112653
Rattus norvegicus	RefSeq	GI_62658688-S	ILMN_63231	LOC363898	XM_344095.2	XM_344095.2		363898	62658688	XM_344095.2	LOC363898	XP_344096.2	ILMN_1351527	0000520195	S	688	TGCAGAAGGAAATGCAGTCCCCTGTACTGGGATCCCTGAGCCCAGTGTAG				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC363898), mRNA.					
Rattus norvegicus	RefSeq	GI_62667485-S	ILMN_65112	LOC302832	XM_238631.2	XM_238631.2		302832	62667485	XM_238631.2	LOC302832	XP_238631.1	ILMN_1361829	0006760309	S	70	GAAACAAGCTTTCACAGGATCAAGAGCTGTTCCTCCTATTCATGCTGGGC				Xq36	PREDICTED: Rattus norvegicus hypothetical LOC302832 (LOC302832), mRNA.					
Rattus norvegicus	RefSeq	GI_62649788-S	ILMN_70206	WASF2_PREDICTED	XM_232734.3	XM_232734.3		313024	62649788	XM_232734.3	Wasf2_predicted	XP_232734.3	ILMN_1649769	0001990470	S	2114	AGTTGCTTCGCCTCCTGGAACTAGGGAAAATGGACGTTTACGGAGCGCCC				5q36	PREDICTED: Rattus norvegicus WAS protein family, member 2 (predicted) (Wasf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465632-S	ILMN_267703	PEX5L	NM_173152.1	NM_173152.1		286937	27465632	NM_173152.1	Pex5l	NP_775175.1	ILMN_1368870	0005570411	S	1468	CTTGGGGCAACCTTGGCAAATGGAGACCGCAGTGAGGAAGCTGTAGAGGC	2	-	119132521-119132570	2q25	Rattus norvegicus peroxisomal biogenesis factor 5-like (Pex5l), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]	Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence IDA]; Any process by which a protein is maintained in a location and prevented from moving elsewhere. These include sequestration, stabilization to prevent transport elsewhere and the active retrieval of proteins that do move away [goid 45185] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IPI]	Trjip8b; TRIP8b	Trjip8b; TRIP8b
Rattus norvegicus	RefSeq	GI_51948533-S	ILMN_270796	TMEM178	NM_001004282.1	NM_001004282.1		362691	51948533	NM_001004282.1	Tmem178	NP_001004282.1	ILMN_1348808	0002060075	S	1335	GCAGCATCTTCAGAACTTGTCCTGGTGGCGTCCTGTTGTGTCAGCACCTG	6	+	3946386-3946435	6q11-q12	Rattus norvegicus transmembrane protein 178 (Tmem178), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647586-S	ILMN_50616	LOC502832	XM_578332.1	XM_578332.1		502832	62647586	XM_578332.1	LOC502832	XP_578332.1	ILMN_1368404	0002470286	S	493	TGGCGGTGTCTCTGGGACAAATGGAAACCATATCCTGCAAGGCATGTGAG				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain VK-1 (LOC502832), mRNA.					
Rattus norvegicus	RefSeq	GI_62664191-S	ILMN_69457	WNT8A_PREDICTED	XM_226051.4	XM_226051.4		291678	109506429	XM_226051.4	Wnt8a_predicted	XP_226051.4	ILMN_1372453	0004590528	S	756	GCTGATCTTCTTAGAGGGGTCTCCTGACTACTGCAACCGCAATGCCAGCC	18	+	27011854-27011903	18p12	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 8A (predicted) (Wnt8a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641171-S	ILMN_50080	LOC293166	XM_218982.3	XM_218982.3		293166	62641171	XM_218982.3	LOC293166	XP_218982.3	ILMN_1359858	0001230372	S	2526	CTGGTAGCCTGCCTGGTGAGTTGTCAGCCTGCCTTCAGATCATCACAGGG				1q34	PREDICTED: Rattus norvegicus hypothetical LOC293166 (predicted) (LOC293166), mRNA.					
Rattus norvegicus	RefSeq	GI_62664096-S	ILMN_269323	RGD1309102_PREDICTED	XM_001053125.1	XM_001053125.1		291750	109506993	XM_001053125.1	RGD1309102_predicted	XP_001053125.1	ILMN_1352891	0001990110	S	4712	GCCCCAGACAGTCCTGTGAGATGGGTTTTGAACTTCGGTTGTGGACACTC				18p12	PREDICTED: Rattus norvegicus similar to TRS85 homolog (predicted) (RGD1309102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664356-S	ILMN_63327	LOC364863	XM_574142.1	XM_574142.1		364863	62664356	XM_574142.1	LOC364863	XP_574142.1	ILMN_1371048	0006660500	S	463	GACAGTCAGAGACAGGGGTGAGGGTAGAGGTGGTCAAGGTTGAAAAGATC				18q11	PREDICTED: Rattus norvegicus similar to Hmgb1 protein (LOC364863), mRNA.					
Rattus norvegicus	RefSeq	GI_56090641-S	ILMN_292683	AGTRAP	NM_001007654.1	NM_001007654.1		298646	56090641	NM_001007654.1	Agtrap	NP_001007655.1	ILMN_1351025	0004780408	S	1941	CACGTGTCAAGTTCAAGACTGCAGAGGCCTGAGGAGAAGGGAGCACGTGG	5	-	165154433-165154482	5q36	Rattus norvegicus angiotensin II receptor-associated protein (Agtrap), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]	 [goid 4945] [evidence ISS];  [goid 4945] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95145	MGC95145
Rattus norvegicus	RefSeq	GI_62642647-S	ILMN_264399	RGD1308284_PREDICTED	XM_342165.2	XM_342165.2		361871	62642647	XM_342165.2	RGD1308284_predicted	XP_342166.1	ILMN_1374079	0005360040	S	557	CCATCATAGGAGCGTGTGTCTTGTCAGGGGCTGGAGAGATGGCCAGAAGC	2	-	3054666-3054715	2q11	PREDICTED: Rattus norvegicus similar to AI256775 protein (predicted) (RGD1308284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660808-S	ILMN_56429	LOC498414	XM_573661.1	XM_573661.1		498414	62660808	XM_573661.1	LOC498414	XP_573661.1	ILMN_1373716	0000050538	S	1325	CCCTACATCCTGTGTCCTCCTGTTGGGTGCTGAGGATGGGATAAGCCCTC					PREDICTED: Rattus norvegicus similar to LRRGT00197 (LOC498414), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663766-S	ILMN_67442	WDR37_PREDICTED	XM_225512.4	XM_225512.4		307075	109505080	XM_225512.4	Wdr37_predicted	XP_225512.4	ILMN_1353720	0005270113	S	1551	GTGTTGGGCAAAAAATCATAGCTCTCCCCCATGACAACCGGCAAGTGCGG	17	+	72625273-72625322	17q12.1	PREDICTED: Rattus norvegicus WD repeat domain 37 (predicted) (Wdr37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660629-S	ILMN_280469	RGD1561605_PREDICTED	XM_001063619.1	XM_001063619.1		289717	109500833	XM_001063619.1	RGD1561605_predicted	XP_001063619.1	ILMN_1354096	0006550440	S	3907	GGCCTTGTGGGCCATGCAGCTACACATCACAGGGAGTCTGATCCTGAAAG				14q21	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1561605_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653103-A	ILMN_298906	BIN2	NM_001012223.1	NM_001012223.1		366988	58866017	NM_001012223.1	Bin2	NP_001012223.1	ILMN_1376837	0004280239	S	1269	CTCGAGCGAGGGGGCAGAACAGAGCAAAAGAACAGCGTCCGTCCAGCGGA	7	-	139412887-139412936	7q36	Rattus norvegicus bridging integrator 2 (Bin2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647796-S	ILMN_60891	LOC502847	XM_578347.1	XM_578347.1		502847	62647796	XM_578347.1	LOC502847	XP_578347.1	ILMN_1364105	0000540524	S	388	GGAAGGAATCTGTGGTTAGCTTCTGTGGGGGCTCTGAGGTTCAGGAGGGC					PREDICTED: Rattus norvegicus similar to thymosin beta-10 (LOC502847), mRNA.					
Rattus norvegicus	RefSeq	GI_62658027	ILMN_67170	RGD1308154_PREDICTED	XM_344027.3	XM_344027.3		363799	109493420	XM_344027.3	RGD1308154_predicted	XP_344028.2	ILMN_1649894	0002900528	S	1002	TGGCTTCAACAGTGGAGTGATGCTGCTGAACCTGGAGGCCATGCGCCAGT	11	+	71658377-71658426	11q22	PREDICTED: Rattus norvegicus similar to CG11388-PA (predicted) (RGD1308154_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654470-S	ILMN_58596	VILL_PREDICTED	XM_217296.4	XM_217296.4		301057	109484063	XM_217296.4	Vill_predicted	XP_217296.4	ILMN_1365217	0004540019	S	2441	CACAGGGTGTGGACCCAGCCCGAAAGGAGTTCTATCTCTCAGACTCCGAT	8	+	124022315-124022343:124022681-124022701	8q32	PREDICTED: Rattus norvegicus villin-like (predicted) (Vill_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651204-S	ILMN_270203	RGD1304878	XR_009633.1	XR_009633.1		314415	109479935	XR_009633.1	RGD1304878		ILMN_1351921	0004590095	S	5900	TTCCTCATCACCGCTTAGCCCACCAGCCAGTAGACCTGAGGGAAGGTGTG				6q32	PREDICTED: Rattus norvegicus similar to 2410024A21Rik protein (RGD1304878), misc RNA.					
Rattus norvegicus	RefSeq	GI_62665140-S	ILMN_264028	RGD1310170_PREDICTED	XM_226431.2	XM_226431.2		291958	62665140	XM_226431.2	RGD1310170_predicted	XP_226431.1	ILMN_1352341	0001740162	S	1082	ACGGGCTATCTGCAGCTGACATTTGGCTTATGTGGCGCTTGCTGCATGGG	19	-	35067770-35067819	19q11	PREDICTED: Rattus norvegicus similar to beta-1,3-galactosyltransferase-related protein (predicted) (RGD1310170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647048-S	ILMN_266133	PARP12_PREDICTED	XM_001067057.1	XM_001067057.1		362343	109473305	XM_001067057.1	Parp12_predicted	XP_001067057.1	ILMN_1370192	0000870369	S	2078	GGAGACTTCGTCAGGGGCAGCACTTCCTTTGTCCGCCCTCCAGCCAAGGA				4q22	PREDICTED: Rattus norvegicus poly (ADP-ribose) polymerase family, member 12 (predicted) (Parp12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577870-S	ILMN_267087	OLR1179	NM_001000864.1	NM_001000864.1		405158	47577870	NM_001000864.1	Olr1179	NP_001000864.1	ILMN_1359740	0002370047	S	594	CATGTATGCTATTGGTGTCATACTTGGTGTTTTTCCCTTATCGGGGATCC	8	+	18919206-18919255	8q13	Rattus norvegicus olfactory receptor 1179 (Olr1179), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1179	Olr1179
Rattus norvegicus	RefSeq	GI_31343477-S	ILMN_275142	KLKS3	NM_175759.2	NM_175759.2		292868	31343477	NM_175759.2	Klks3	NP_786935.1	ILMN_2039093	0003520376	S	628	GGAGAGATGGATGGGGGCAAAGACACTTGCACGGGTGACTCAGGAGGCCC	1	+	94582762-94582794:94583159-94583175	1q22	Rattus norvegicus kallikrein, submaxillary gland S3 (Klks3), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Klk1c9; rK9; Klk9	Klk1c9; rK9; Klk9
Rattus norvegicus	RefSeq	GI_58865437-A	ILMN_303002	TRIP13	NM_001011930.1	NM_001011930.1		292206	58865437	NM_001011930.1	Trip13	NP_001011930.1	ILMN_1376456	0004230546	S	1238	TTTCAAGGAAGAGTGAGGGCCTCAGCGGCCGGGTCTTGAGGAAACTTCCT	1	+	30181370-30181376:30182211-30182253	1p11	Rattus norvegicus thyroid hormone receptor interactor 13 (Trip13), mRNA.	The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]	Progression through the third stage of prophase I in meiosis, in which crossing over occurs between a chromatid in one partner and another chromatid in the homologous chromosome [goid 239] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity [goid 7131] [evidence ISS]; Progression through male meiosis I, the first meiotic division in the male germline [goid 7141] [evidence ISS]; The cell cycle process whereby the first meiotic division occurs in the female germline [goid 7144] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665922-S	ILMN_264194	RGD1308233_PREDICTED	XM_001080411.1	XM_001080411.1		309732	109510021	XM_001080411.1	RGD1308233_predicted	XP_001080411.1	ILMN_1351056	0002260300	S	995	TTATGGGGGCGGGTGGGCGGGAGGCTAGGTTGATTCCTGGTTTTGTCACT				20p11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14547 (predicted) (RGD1308233_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653132-S	ILMN_58849	LOC315337	XM_235695.3	XM_235695.3		315337	62653132	XM_235695.3	LOC315337	XP_235695.3	ILMN_1356027	0004200524	S	2086	AGCCTAGCTTGAGGAGCTGATCAAGGAGGGGTGAAATCATGGGTCCTGGG				7q36	PREDICTED: Rattus norvegicus similar to homeodomain protein (LOC315337), mRNA.					
Rattus norvegicus	RefSeq	GI_62650013-A	ILMN_262959	MAD2L2	NM_001012106.1	NM_001012106.1		313702	58865781	NM_001012106.1	Mad2l2	NP_001012106.1	ILMN_1376282	0001990484	S	828	GAGCGAGCTCATAAAAACAGCTGAGGGCACCTCTGTCACCAGACGCCCAG	5	+	165222499-165222548	5q36	Rattus norvegicus MAD2 mitotic arrest deficient-like 2 (yeast) (Mad2l2), mRNA.		Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_6978774-S	ILMN_268927	DRD1A	NM_012546.1	NM_012546.1		24316	6978774	NM_012546.1	Drd1a	NP_036678.1	ILMN_1372289	0000770487	S	3470	AGCCTGGACTGCAAAAAGATCCATCCAGTCCCCTCTTGTGGGGGCATTGC	17	+	16658700-16658749	17p14	Rattus norvegicus dopamine receptor D1A (Drd1a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]	The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IMP]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide [goid 7187] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence TAS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IMP]; The biosynthesis of a synapse [goid 7416] [evidence IEP]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence IEA]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence ISS]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence IEA]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IMP]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IMP]; Any process that initiates the activity of an inactive adenylate cyclase that is an integral part of the series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, resulting in a subsequent change in the concentration of cyclic AMP [goid 10580] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence IEA]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IDA]; The migration of GABAergic interneuron precursors from the subpallium to the cerebral cortex [goid 21853] [evidence IEA]; The migration of GABAergic interneuron precursors from the subpallium to the cerebral cortex [goid 21853] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IMP]; The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [evidence IDA]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence IEA]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 31161] [evidence IDA]; Learning to anticipate future events on the basis of past experience with the consequences of one's own behavior [goid 35106] [evidence IMP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence ISS]; Any process that stops, prevents or reduces the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 42321] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 43269] [evidence IDA]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IMP]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51281] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51968] [evidence ISS]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence IEA]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence ISS]	A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D1 receptors [goid 1590] [evidence IDA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D1 receptors [goid 1590] [evidence IEA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D1 receptors [goid 1590] [evidence ISS]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D1 receptors [goid 1590] [evidence IDA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D1 receptors [goid 1590] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]	Drd1; Drd-1; D1a	Drd1; Drd-1; D1a
Rattus norvegicus	RefSeq	GI_62663194-S	ILMN_288230	TIFAB	NM_001025029.1	NM_001025029.1		364674	68163498	NM_001025029.1	Tifab	NP_001020200.1	ILMN_1370106	0005340040	S	676	TTCCATCTCAGCCCCTCGCCCCTGATTTACAGACCCAAGGCTCAGGAGAC	17	+	14411784-14411833	17p14	Rattus norvegicus TRAF-interacting protein with forkhead-associated domain, family member B (Tifab), mRNA.				MGC108845	MGC108845
Rattus norvegicus	RefSeq	GI_46485446-S	ILMN_287223	NMT2	NM_207590.1	NM_207590.1		291318	46485446	NM_207590.1	Nmt2	NP_997473.1	ILMN_1363142	0001980601	S	1365	CTACAACATTCACACAGAGACGCCCCTGCTGGACCTCATGAACGACGCGC	17	-	86041050-86041099	17q12.3	Rattus norvegicus N-myristoyltransferase 2 (Nmt2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	The covalent or non-covalent attachment of a myristoyl moiety to the N-terminal amino acid residue of a protein [goid 6499] [evidence TAS]; The covalent or non-covalent attachment of a myristoyl moiety to the N-terminal amino acid residue of a protein [goid 6499] [evidence IEA]; The myristoylation of the N-terminal glycine of proteins to form the derivative N-myristoyl-glycine [goid 18008] [evidence TAS]	Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide [goid 4379] [evidence TAS]; Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide [goid 4379] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667605-S	ILMN_271360	PLXNB3_PREDICTED	XM_001057493.1	XM_001057493.1		363517	109462341	XM_001057493.1	Plxnb3_predicted	XP_001057493.1	ILMN_1373262	0003360605	S	5415	TGCCCGGGAGATCCCTCGCTACAAGCAGATGGTGGAGAAGTACTATGCGG				Xq37	PREDICTED: Rattus norvegicus plexin B3 (predicted) (Plxnb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242254-S	ILMN_272438	PRMT1	NM_024363.1	NM_024363.1		60421	13242254	NM_024363.1	Prmt1	NP_077339.1	ILMN_1359349	0004730204	S	841	GGACCGGCTTCTCTACCAGTCCTGAGTCTCCATACACACATTGGAAGCAG	1	-	95449791-95449823:95450313-95450329	1q22	Rattus norvegicus protein arginine methyltransferase 1 (Prmt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IDA]; The addition of a methyl group to an arginine residue in a protein [goid 18216] [evidence IDA]; The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine [goid 19919] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group (CH3-) to a protein [goid 8276] [evidence IDA]; Catalysis of the transfer of a methyl group (CH3-) to a protein [goid 8276] [evidence ISS]; Catalysis of the transfer of a methyl group (CH3-) to a protein [goid 8276] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + histone-arginine = S-adenosyl-L-homocysteine + histone-N-methyl-arginine [goid 8469] [evidence IDA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence TAS]; Catalysis of the reaction: S-adenosyl-L-methionine + (cytochrome c)-arginine = S-adenosyl-L-homocysteine + (cytochrome c)-N(omega)-methyl-arginine [goid 16275] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein constituent of a small nucleolar ribonucleoprotein particle [goid 30519] [evidence IDA]; Catalysis of the addition of a methyl group to either of the unmethylated terminal nitrogen atoms (also called omega nitrogen) in peptidyl-arginine to form an omega-N-G-monomethylated arginine residue [goid 35241] [evidence IDA]; Catalysis of the addition of a second methyl group to methylated peptidyl-arginine. Methylation is on the same terminal nitrogen (omega nitrogen) residue that was previously methylated, resulting in asymmetrical peptidyl-N(omega),N(omega)-dimethylated arginine residues [goid 35242] [evidence IDA]; Catalysis of the addition of a second methyl group to methylated peptidyl-arginine. Methylation is on the same terminal nitrogen (omega nitrogen) residue that was previously methylated, resulting in asymmetrical peptidyl-N(omega),N(omega)-dimethylated arginine residues [goid 35242] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62654933	ILMN_63387	RGD1310819_PREDICTED	XM_237064.4	XM_237064.4		301351	109485962	XM_237064.4	RGD1310819_predicted	XP_237064.4	ILMN_1651185	0001660037	S	4799	TTCCTGAAGAAACCCACCCCGAGAAGGAGAGGAAGGGACGTGGCAGGGTT	9	-	36545566-36545615	9q21	PREDICTED: Rattus norvegicus similar to putative protein (5S487) (predicted) (RGD1310819_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643129-S	ILMN_55527	SEMA5A_PREDICTED	XM_241275.4	XM_241275.4		310207	109464573	XM_241275.4	Sema5a_predicted	XP_241275.3	ILMN_1355103	0006980441	S	2804	GTACTCGGCAGTGCATCCTTCTGTTTCCTGTGGGCAGCCAGTGTTCTGGA	2	+	85144246-85144295	2q23	PREDICTED: Rattus norvegicus sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A (predicted) (Sema5a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39812302-S	ILMN_272113	RGD727788	XM_001064737.1	XM_001064737.1		313453	109512545	XM_001064737.1	RGD727788	XP_001064737.1	ILMN_1355434	0002470551	S	1264	CAAGAAAGGAAGCTCACTAAGCAGGGCTGGGGAGCCAGTCGGCAAGAGTG				Xq11	PREDICTED: Rattus norvegicus hypothetical protein LOC313453 (RGD727788), mRNA.					
Rattus norvegicus	RefSeq	GI_47576268-S	ILMN_291867	OLR129	NM_001001027.1	NM_001001027.1		405912	47576268	NM_001001027.1	Olr129	NP_001001027.1	ILMN_1370583	0004590398	S	258	CCAGAGGGAGATTGCACACGGAGCCTGTCTCATTCAGTCCTACTTCATCC	1	-	161678046-161678095	1q32	Rattus norvegicus olfactory receptor 129 (Olr129), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr129	Olr129
Rattus norvegicus	RefSeq	GI_62663813-S	ILMN_270108	RGD1307443_PREDICTED	XM_001070349.1	XM_001070349.1		361244	109505770	XM_001070349.1	RGD1307443_predicted	XP_001070349.1	ILMN_1355131	0006590148	S	3161	GCTCTGGCGTTGACCCTAACAGTGCTAACTGGAGCTGTGACTTGGGTGTG				17p11	PREDICTED: Rattus norvegicus similar to mKIAA0319 protein (predicted) (RGD1307443_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642178-S	ILMN_52438	MINPP1	XM_342044.3	XM_342044.3		29688	109460039	XM_342044.3	Minpp1	XP_342045.3	ILMN_1358344	0000770039	S	2382	TCCAAGTAGGTCTTGCAGAACCACCTCCATCCCTCGGACCTGTTTGAGGC	1	+	236516542-236516591	1q52	PREDICTED: Rattus norvegicus multiple inositol polyphosphate histidine phosphatase 1 (Minpp1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence NAS]	Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]; Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = myo-inositol pentakisphosphate (mixed isomers) + phosphate [goid 4446] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: inositol-1,3,4,5,6-pentakisphosphate + H2O = inositol-1,4,5,6-tetrakisphosphate + phosphate [goid 30351] [evidence IDA]; Catalysis of the reaction: inositol-1,4,5,6-tetrakisphosphate + H2O = inositol-1,4,5-trisphosphate + phosphate [goid 30352] [evidence IDA]; Catalysis of the reaction: 2,3-diphosphoglycerate + H2O = 2-phosphoglycerate + phosphate [goid 34417] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56605745-S	ILMN_299588	TMEM97	NM_001008334.1	NM_001008334.1		303330	56605745	NM_001008334.1	Tmem97	NP_001008335.1	ILMN_1360876	0000510053	S	1118	CTGGCTCTCCTTACAGAAACAAAGAGCAGCGGGTGCGAGGCAGTGCTGGT	10	-	64652715-64652764	10q25	Rattus norvegicus transmembrane protein 97 (Tmem97), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105541; RGD1307423	MGC105541; RGD1307423
Rattus norvegicus	RefSeq	Rn.20057	ILMN_299588	TMEM97	NM_001008334.1	NM_001008334.1		303330	56605745	NM_001008334.1	Tmem97	NP_001008335.1	ILMN_1530377	0003610075	S	316	AATCATCTATGCGGTTCACACCATAACAACTTTAATTCCAATCCTCTATA	10	-	64653517-64653566	10q25	Rattus norvegicus transmembrane protein 97 (Tmem97), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105541; RGD1307423	MGC105541; RGD1307423
Rattus norvegicus	RefSeq	GI_62639668-S	ILMN_272759	RGD1563905_PREDICTED	XR_009394.1	XR_009394.1		292882	109461890	XR_009394.1	RGD1563905_predicted		ILMN_1360683	0005550136	S	351	ACCGGGAATCTAAGGAGACTGACCGCCAAATGTATCATAGCCTGTACCTG				1q22	PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (predicted) (RGD1563905_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577712-S	ILMN_293435	OLR583	NM_001000928.1	NM_001000928.1		405248	47577712	NM_001000928.1	Olr583	NP_001000928.1	ILMN_1367169	0004070079	S	372	GGCCATCAGCAACCCCCTGATGTATACTGTGGACATGTCTAGTAGAGTAT	3	+	71472041-71472090	3q24	Rattus norvegicus olfactory receptor 583 (Olr583), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr583	Olr583
Rattus norvegicus	RefSeq	GI_6978614-S	ILMN_300135	CCKAR	NM_012688.1	NM_012688.1		24889	6978614	NM_012688.1	Cckar	NP_036820.1	ILMN_1350836	0003170025	S	2373	ACCAGGGCAAGGGTGGTAACATGTGTAGTCAGTCCCCAAGGAACACTGGC				14q11	Rattus norvegicus cholecystokinin A receptor (Cckar), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IDA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with cholecystokinin, a 33-amino acid peptide secreted by the upper intestinal mucosa and also found in the central nervous system, to initiate a change in cell activity [goid 4951] [evidence TAS]; Combining with cholecystokinin, a 33-amino acid peptide secreted by the upper intestinal mucosa and also found in the central nervous system, to initiate a change in cell activity [goid 4951] [evidence IEA]	Cck-ar	Cck-ar
Rattus norvegicus	RefSeq	GI_16758193-S	ILMN_269486	RGS2	NM_053453.1	NM_053453.1		84583	16758193	NM_053453.1	Rgs2	NP_445905.1	ILMN_1362451	0002470440	S	1221	CTGTAGAACCAGTGTCCGTTCCGAGTGCCAAAAACTGTCTTGCGGGCAGC	13	-	57891276-57891325	13q21	Rattus norvegicus regulator of G-protein signaling 2 (Rgs2), mRNA.		The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45744] [evidence TAS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643919-S	ILMN_48856	LOC499676	XM_574998.1	XM_574998.1		499676	62643919	XM_574998.1	LOC499676	XP_574998.1	ILMN_1373653	0004670452	S	61	CCGTGGGGAGTCAAACCACCTTCTATACAGCACTTCTATGCCCCCGCGTT					PREDICTED: Rattus norvegicus similar to Hist2h2aa1 protein (LOC499676), mRNA.					
Rattus norvegicus	RefSeq	GI_62653374-S	ILMN_296473	GLB1L3	NM_001024358.1	NM_001024358.1		500961	66730518	NM_001024358.1	Glb1l3	NP_001019529.2	ILMN_1358905	0001450056	S	1784	CTGGGGAAGTTTGAACGTTGGCTCTTTTCCCACGGACACCTTCCTGCACC	8	-	26456893-26456942	8q13	Rattus norvegicus galactosidase, beta 1-like 3 (Glb1l3), mRNA.	A multimeric enzyme complex that in E. coli is a heterooctamer made up of four alpha subunits and four beta subunits. Catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides [goid 9341] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides [goid 4565] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665708-S	ILMN_288834	SNRP1C_PREDICTED	XM_001078182.1	XM_001078182.1		361808	109509828	XM_001078182.1	Snrp1c_predicted	XP_001078182.1	ILMN_1361141	0001450524	S	12	AGACCGGAAGCAGAAGTCCTATTCTTCGCGTTTGCATCCCTGCGTCGGCG				20p12	PREDICTED: Rattus norvegicus U1 small nuclear ribonucleoprotein 1C (predicted) (Snrp1c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955133-S	ILMN_263017	DYNC1LI1	NM_145772.1	NM_145772.1		252902	21955133	NM_145772.1	Dync1li1	NP_665715.1	ILMN_1369108	0005080014	S	1639	GCTTGTCTCTGCCCTCTCCTTGGCAGTTGGAATTATGATGGGGCGGGACC	8	+	119137328-119137377	8q32	Rattus norvegicus dynein cytoplasmic 1 light intermediate chain 1 (Dync1li1), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle [goid 7052] [evidence TAS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that modulates the frequency, rate or extent of the centrosome cycle, the processes of centrosome duplication and separation [goid 46605] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Dnclic1; Dncli1	Dnclic1; Dncli1
Rattus norvegicus	RefSeq	GI_8392949-S	ILMN_293680	AVP	NM_016992.1	NM_016992.1		24221	8392949	NM_016992.1	Avp	NP_058688.1	ILMN_1372854	0002190280	S	454	AGCTGCTGCTTAGGCTGGTACAGCTGGCTGGGACACAAGAGTCCGTGGAT	3	-	118205088-118205137	3q36	Rattus norvegicus arginine vasopressin (Avp), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence TAS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The process of renal water excretion [goid 30146] [evidence IEA]; The process of renal water excretion [goid 30146] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of water within a tissue, organ, or a multicellular organism [goid 50891] [evidence IMP]	The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a V1A vasopressin receptor [goid 31894] [evidence IMP]; Interacting selectively with a V1B vasopressin receptor [goid 31895] [evidence IMP]; Interacting selectively with a V2 vasopressin receptor [goid 31896] [evidence TAS]	DI; Vas	DI; Vas
Rattus norvegicus	RefSeq	GI_62645911-S	ILMN_275352	RGD1308877_PREDICTED	XM_001081240.1	XM_001081240.1		311441	109470861	XM_001081240.1	RGD1308877_predicted	XP_001081240.1	ILMN_1354246	0004050142	S	1254	CCCTGCTGCTGTCTTTGCTGGACTTTGTAGCCCCATCAAGGCCGTTTGTG				3q36	PREDICTED: Rattus norvegicus similar to CGI-09 protein (predicted) (RGD1308877_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222309-S	ILMN_272595	OAS1H	NM_001009491.1	NM_001009491.1		494200	57222309	NM_001009491.1	Oas1h	NP_001009491.1	ILMN_1369943	0007050167	S	996	GGTGTGAGCTGGCAAAAGAGGCAGAAGCCTGGCTGAAGTACCCGTGCTTT	12	-	36821624-36821673	12q16	Rattus norvegicus 2 ' -5 ' oligoadenylate synthetase 1H (Oas1h), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657612-S	ILMN_287179	TIAM1	XM_001072877.1	XM_001072877.1		304109	109494002	XM_001072877.1	Tiam1	XP_001072877.1	ILMN_1349837	0000730132	S	7058	ACCGAGGCAGAGGCGTCGATAGTCACGTTTTCTGGTCTCCCTGCAACATG				11q11	PREDICTED: Rattus norvegicus T-cell lymphoma invasion and metastasis 1 (Tiam1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin [goid 48013] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]	 [goid 5057] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with an ephrin receptor [goid 46875] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662887-S	ILMN_286284	RGD1561681_PREDICTED	XM_001054125.1	XM_001054125.1		498661	109518933	XM_001054125.1	RGD1561681_predicted	XP_001054125.1	ILMN_1374660	0006040136	S	1506	CGTTGATCTTCGTGTGAACTTGGCCGTGAATGTTGGCAAGACCCGAGGCT				16q12.5	PREDICTED: Rattus norvegicus similar to pyruvate kinase (EC 2.7.1.40) isozyme M2 - rat (predicted), transcript variant 3 (RGD1561681_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650628-S	ILMN_69257	RGD1560395_PREDICTED	XM_216698.3	XM_216698.3		298963	109478146	XM_216698.3	RGD1560395_predicted	XP_216698.3	ILMN_1364223	0005080563	S	1814	GCTCTGCTACGCAGATGCTCATGGTTTCCCTGCGGTGACAGCATTTCCAG	6	-	54929254-54929266:54929267-54929303	6q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700108M19 (predicted) (RGD1560395_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660789-S	ILMN_55396	ADCY1_PREDICTED	XM_223616.3	XM_223616.3		305509	62660789	XM_223616.3	Adcy1_predicted	XP_223616.3	ILMN_1366411	0000940541	S	3298	AGCGGACTGTGGCTGTGGATCACCATGAAGCCCTGTGAGGAGCAAGCATG				14q21	PREDICTED: Rattus norvegicus adenylate cyclase 1 (predicted) (Adcy1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_23463266-S	ILMN_295915	GPR156	NM_153295.1	NM_153295.1		260430	23463266	NM_153295.1	Gpr156	NP_695207.1	ILMN_1368664	0005910014	S	2270	CAGACAGTGACCTTGAGCAGACTTCAGGATTGGCCTCCTGGGAAAAGCTG	11	-	64507039-64507088	11q21	Rattus norvegicus G protein-coupled receptor 156 (Gpr156), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IEA]	Gababl	Gababl
Rattus norvegicus	RefSeq	GI_19424155-S	ILMN_302146	AKAP5	NM_133515.1	NM_133515.1		171026	19424155	NM_133515.1	Akap5	NP_598199.1	ILMN_1356427	0002570332	S	2277	GCAGAGGAACCCATAGTTGGCCAGGCAGAGGAAACTGTATTGAGGCATGC	6	+	98928097-98928146	6q24	Rattus norvegicus A kinase (PRKA) anchor protein 5 (Akap5), mRNA.		The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51493] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]	Akap79; AKAP150; P150	Akap79; AKAP150; P150
Rattus norvegicus	RefSeq	GI_62655653-S	ILMN_280125	RGD1564086_PREDICTED	XM_001078704.1	XM_001078704.1		497862	109489675	XM_001078704.1	RGD1564086_predicted	XP_001078704.1	ILMN_1365465	0006200288	S	274	CTGTTCACTAGCAGGCCTCGTGTGGCAACCTCCATGCCGGTGCAGATCAT				10q12	PREDICTED: Rattus norvegicus RGD1564086 (predicted) (RGD1564086_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656942-S	ILMN_56135	RGD1559974_PREDICTED	XM_220903.4	XM_220903.4		303479	109488868	XM_220903.4	RGD1559974_predicted	XP_220903.4	ILMN_1371418	0004200400	S	2355	ACCTCAGGCTGCTCCTGAATCCGAGGTCCCCTCAGCTCAAAGAGCTGGCA	10	-	84822464-84822513	10q31	PREDICTED: Rattus norvegicus similar to nuclear domain 10 protein (predicted) (RGD1559974_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31343521-S	ILMN_303014	CYP2J3	NM_175766.2	NM_175766.2		313375	31343521	NM_175766.2	Cyp2j3	NP_786942.1	ILMN_1373593	0004060114	S	1537	GAAGAAATGGCATCTGCATGGAGGACACTGGTGTCTGCTCACATTGAGGG	5	-	116744378-116744427	5q33	Rattus norvegicus cytochrome P450, family 2, subfamily j, polypeptide 3 (Cyp2j3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	Cyp2j9; Cyp2J3	Cyp2j9; Cyp2J3
Rattus norvegicus	RefSeq	GI_31560858-S	ILMN_288802	TRHR2	NM_181364.3	NM_181364.3		252859	31560858	NM_181364.3	Trhr2	NP_852029.2	ILMN_1352107	0004210438	S	2156	AGCAGGGCTGTTTGCTCTGTGACGGGAGACCTCAGGAAGGCAGGAATTGG	19	-	52623180-52623229	19q12	Rattus norvegicus thyrotropin releasing hormone receptor 2 (Trhr2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4997] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639421-S	ILMN_270138	PDCD5_PREDICTED	XM_214911.2	XM_214911.2		292814	62639421	XM_214911.2	Pdcd5_predicted	XP_214911.1	ILMN_1374195	0004590102	S	509	ACGTGCTTAGACAGACCCACGGAGCAGGTCTAGGACAGTTACCACCTGTA	1	-	88194415-88194464	1q21	PREDICTED: Rattus norvegicus programmed cell death 5 (predicted) (Pdcd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577214	ILMN_282514	OLR737	NM_001000616.1	NM_001000616.1		404808	47577214	NM_001000616.1	Olr737	NP_001000616.1	ILMN_1649848	0001170647	S	665	TGAGGAATCACTCTGCTGAGGGGAGGCGCAAGGCTCTATCTACCTGTGCA	3	-	74612519-74612568	3q24	Rattus norvegicus olfactory receptor 737 (Olr737), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr09	tpcr09
Rattus norvegicus	RefSeq	GI_62718037-S	ILMN_265081	LOC301121	XM_001055912.1	XM_001055912.1		301121	109486539	XM_001055912.1	LOC301121	XP_001055912.1	ILMN_1371006	0006860711	S	2134	ATGACCTGGCGTCCCTGTCGCTGACCCTGCTGGACAAAGAGGACATTGGG					PREDICTED: Rattus norvegicus similar to DNA-binding protein RFX2, transcript variant 4 (LOC301121), mRNA.					
Rattus norvegicus	RefSeq	GI_62650753-S	ILMN_269096	LOC687780	XM_001080119.1	XM_001080119.1		687780	109479454	XM_001080119.1	LOC687780	XP_001080119.1	ILMN_2038936	0002350192	S	6	TTGCAGCAGCGGCGTCCGCGGGTAAGTAGCCAACATGCAGCTCTTTGTCC					PREDICTED: Rattus norvegicus similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed (LOC687780), mRNA.					
Rattus norvegicus	RefSeq	GI_19173753-S	ILMN_264266	TESK2	NM_133396.1	NM_133396.1		170908	19173753	NM_133396.1	Tesk2	NP_596887.1	ILMN_1356521	0002680292	S	2847	CTTTCCTCCTGTAGCTGGAGCTTTGGGAACAGTCTGTCCTTACAGAGCCG	5	+	137100391-137100429	5q36	Rattus norvegicus testis-specific kinase 2 (Tesk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence NAS]; Progression through the nuclear division phase of a meiotic cell cycle in the male germline [goid 7140] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence NAS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IMP]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666902-S	ILMN_55230	LOC501572	XM_576976.1	XM_576976.1		501572	62666902	XM_576976.1	LOC501572	XP_576976.1	ILMN_1371002	0006860671	S	566	CATCGTAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGGTGCC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC501572), mRNA.					
Rattus norvegicus	RefSeq	GI_62660495-S	ILMN_52046	RGD1307468_PREDICTED	XM_223428.4	XM_223428.4		289635	109499701	XM_223428.4	RGD1307468_predicted	XP_223428.4	ILMN_1359256	0005550035	S	512	TGTTGAAAGCCCTGTCACTCCTAGCACACCAGGGAGCCCACCTGTGAGTC	14	-	47185908-47185949:47189574-47189581	14p11	PREDICTED: Rattus norvegicus similar to expressed sequence AA536743 (predicted) (RGD1307468_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393330-S	ILMN_277442	MAPK3	XM_001079997.1	XM_001079997.1		50689	109462881	XM_001079997.1	Mapk3	XP_001079997.1	ILMN_1366612	0004670685	S	934	CTTTGACATGGAGCTGGATGATCTCCCCAAGGAGCGGCTGAAGGAGCTGA				1q36	PREDICTED: Rattus norvegicus mitogen activated protein kinase 3 (Mapk3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The directed movement of a MAP kinase to the nucleus upon activation [goid 189] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEP]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IC ]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence TAS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164078-S	ILMN_274365	V1RF3	NM_001009510.1	NM_001009510.1		494229	57164078	NM_001009510.1	V1rf3	NP_001009510.1	ILMN_1362831	0006380347	S	817	GTAGTCATTGCATGTTTCCCAACTGTGAGTCCCTTTCTGGTGATCAGCCG	1	+	58878550-58878599	1q12	Rattus norvegicus vomeronasal 1 receptor, F3 (V1rf3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643997-S	ILMN_53636	LOC502564	XM_578050.1	XM_578050.1		502564	62643997	XM_578050.1	LOC502564	XP_578050.1	ILMN_1358526	0003170463	S	1036	CCCTGTCTTCCATACAGTGTCCTTTTTTGTAGCCCTCACTTAAACACCAT				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (LOC502564), mRNA.					
Rattus norvegicus	RefSeq	GI_6981621-S	ILMN_289225	SYP	NM_012664.1	NM_012664.1		24804	6981621	NM_012664.1	Syp	NP_036796.1	ILMN_1368805	0002810059	S	2171	GGTCTGGAGCCCCGATCCTGTACCCTCTGCTGTGTCTGTGATGTTGGTAG	X	-	26890451-26890500	Xq13	Rattus norvegicus synaptophysin (Syp), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Penetrating at least one phospholipid bilayer of a synaptic vesicle membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30285] [evidence TAS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence ISS]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	Syp1	Syp1
Rattus norvegicus	RefSeq	GI_62661223-S	ILMN_67523	GALNT12_PREDICTED	XM_223905.3	XM_223905.3		289976	62661223	XM_223905.3	Galnt12_predicted	XP_223905.3	ILMN_1353396	0006840402	S	891	ATCTGGCAGTGTGGTACTCTGGAAACACACCCTTACTCCCACGTGGGCCA					PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (predicted) (Galnt12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577562-S	ILMN_298291	OLR516	NM_001000316.1	NM_001000316.1		295769	47577562	NM_001000316.1	Olr516	NP_001000316.1	ILMN_1361830	0006370093	S	454	GTGCATGCTATTATCCACACAGTGGCCACTTTCAGACTGTCTTTCTGTCA	3	-	69883692-69883741	3q24	Rattus norvegicus olfactory receptor 516 (Olr516), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr516	Olr516
Rattus norvegicus	RefSeq	GI_62658177-I	ILMN_54468	LAMP3_PREDICTED	XM_573319.1	XM_573319.1		303801	62658177	XM_573319.1	Lamp3_predicted	XP_573319.1	ILMN_1375243	0006510528	S	14	GCTACCTCCCACGATATGAGGTCAGTTTCTCTGACACAAGTGGATGAGCT				11q23	PREDICTED: Rattus norvegicus lysosomal-associated membrane protein 3 (predicted) (Lamp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12025533-S	ILMN_288696	BTG1	NM_017258.1	NM_017258.1		29618	12025533	NM_017258.1	Btg1	NP_058954.1	ILMN_1356848	0001940100	S	1139	CACTGTCTCAACTGTGGTTAGCACCAGCCAGCTCTCTGTACATTCGCTTG	7	+	34031234-34031283	7q13	Rattus norvegicus B-cell translocation gene 1, anti-proliferative (Btg1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence ISS]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence NAS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of endothelial cell differentiation [goid 45603] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664316-S	ILMN_61021	PABPC2_PREDICTED	XM_225992.3	XM_225992.3		291615	109506522	XM_225992.3	Pabpc2_predicted	XP_225992.1	ILMN_1352087	0004070746	S	2268	GAACAGCAAGCAACCCCCACCCCCGACAGAAATAGTAGAACCTACAAACC	18	+	32758593-32758642	18p11	PREDICTED: Rattus norvegicus poly A binding protein, cytoplasmic 2 (predicted) (Pabpc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667134-S	ILMN_68413	LOC367874	XM_346339.2	XM_346339.2		367874	62667134	XM_346339.2	LOC367874	XP_346340.2	ILMN_1358743	0004210164	S	202	TTTGGATACACCCTGTTTCTCTTCCGGTCCCAGGCACTGCGGGAGCTGCA				Xq31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC367874), mRNA.					
Rattus norvegicus	RefSeq	GI_62652596-S	ILMN_273867	LY6E	NM_001017467.1	NM_001017467.1		362934	62945289	NM_001017467.1	Ly6e	NP_001017467.1	ILMN_1354702	0002190041	S	1089	CCCCTGGAATTACTGTACTCATGTTGCATTCCCTGTGCAGGAGGCTGCTC	7	+	113155347-113155396	7q34	Rattus norvegicus lymphocyte antigen 6 complex, locus E (Ly6e), mRNA.		The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42415] [evidence ISS]; The regulated release of epinephrine by a cell or group of cells. Epinephrine is a catecholamine hormone secreted by the adrenal medulla and a neurotransmitter, released by certain neurons and active in the central nervous system [goid 48242] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62657959-S	ILMN_63482	LOC498090	XM_573296.1	XM_573296.1		498090	62657959	XM_573296.1	LOC498090	XP_573296.1	ILMN_1350989	0003940450	S	357	CTAGGAGGGACTCGAAAGGGCACAGGGTGTTATTCTGAGGTATGTGGGGA					PREDICTED: Rattus norvegicus LOC498090 (LOC498090), mRNA.					
Rattus norvegicus	RefSeq	GI_62647017-S	ILMN_69329	LOC500080	XM_575430.1	XM_575430.1		500080	62647017	XM_575430.1	LOC500080	XP_575430.1	ILMN_1362841	0001990315	S	2021	CACTTTCCCAGCCTGGGCTAAGGTCGGCAACATCACTGATCAGACCTAAC					PREDICTED: Rattus norvegicus similar to solute carrier family 13 (sodium/sulfate symporters), member 4 (LOC500080), mRNA.					
Rattus norvegicus	RefSeq	GI_6981505-S	ILMN_279731	SCN2A1	NM_012647.1	NM_012647.1		24766	6981505	NM_012647.1	Scn2a1	NP_036779.1	ILMN_1352812	0001980148	S	8229	CTTACTCATCCACATGGCACCAGAGCTGTTTCAGGTATGATTCGGGAACC	3	+	47722473-47722522	3q21	Rattus norvegicus sodium channel, voltage-gated, type II, alpha 1 (Scn2a1), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IDA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Specialised type of cell-cell junction in cardiac muscle, which mediates mechanical and electrochemical integration between the individual cardiomyocytes. Consist of three different kinds of substructures: adherens junctions, desmosomes and gap junctions [goid 14704] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence TAS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IC ]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IDA]	Scn2a2; RII/RIIA; NachII; SCN2A; ScpII; SCN; Nav1.2; RNSCPIIR	Scn2a2; RII/RIIA; NachII; SCN2A; ScpII; SCN; Nav1.2; RNSCPIIR
Rattus norvegicus	RefSeq	GI_62647009-S	ILMN_269392	RGD1562852_PREDICTED	XM_001067836.1	XM_001067836.1		500079	109473341	XM_001067836.1	RGD1562852_predicted	XP_001067836.1	ILMN_1357167	0002450079	S	856	GAAGATGCTTTTGATGTGGCGAGCTTCCTGGACAAGAGTGAGGCCCAGCG				4q22	PREDICTED: Rattus norvegicus similar to Stra8 (predicted) (RGD1562852_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647007-S	ILMN_269392	RGD1562852_PREDICTED	XM_001067836.1	XM_001067836.1		500079	109473341	XM_001067836.1	RGD1562852_predicted	XP_001067836.1	ILMN_1366704	0003140072	S	110	CCCGCCATCGAGCCACCCTGGTAGGGCTCTTCAACAACCTAAGGAAGACA				4q22	PREDICTED: Rattus norvegicus similar to Stra8 (predicted) (RGD1562852_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643650-S	ILMN_58105	LOC502534	XM_578020.1	XM_578020.1		502534	62643650	XM_578020.1	LOC502534	XP_578020.1	ILMN_1350872	0005890039	S	537	GGTGACACACTTTCCACAAAGTCCAGGTTGGTGTCACAAGAGGCTGTCAC				2q31	PREDICTED: Rattus norvegicus similar to hypothetical protein C130079G13 (LOC502534), mRNA.					
Rattus norvegicus	RefSeq	GI_62641904-S	ILMN_64432	LOC499321	XM_574626.1	XM_574626.1		499321	62641904	XM_574626.1	LOC499321	XP_574626.1	ILMN_1349611	0003450095	S	535	TCCAGTCACGGGTTGAGGTACCCCCAGGAAACACGAGAAGCCGGTCTTGA				1q43	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (LOC499321), mRNA.					
Rattus norvegicus	RefSeq	GI_62665173	ILMN_263873	RGD1307357_PREDICTED	XM_001075843.1	XM_001075843.1		291975	109508800	XM_001075843.1	RGD1307357_predicted	XP_001075843.1	ILMN_1650806	0002640193	S	1256	CACTTCGTAGTTACCAGTGGCTGCAGAAGAGCCACCAGCCTCCCAACTTC				19q12	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434A1319 (predicted) (RGD1307357_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663320-S	ILMN_58786	RGD1306058_PREDICTED	XM_341506.3	XM_341506.3		361224	109504690	XM_341506.3	RGD1306058_predicted	XP_341507.2	ILMN_1372752	0000630377	S	608	CAGCCGCTACCTGTTGGCCTTCCTGGCAGATGACTTCGGAGGACTTTGAC	17	+	21402994-21403042:21403043-21403043	17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110007C09 (predicted) (RGD1306058_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393900-S	ILMN_300575	PAK1	NM_017198.1	NM_017198.1		29431	8393900	NM_017198.1	Pak1	NP_058894.1	ILMN_1362113	0002320452	S	2236	TCCCTTTAGCTTGTGGGCATGGAGGGGACTGATGAGCAAGGGTTTACCTG	1	+	155174415-155174464	1q32	Rattus norvegicus p21 (CDKN1A)-activated kinase 1 (Pak1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Specialised type of cell-cell junction in cardiac muscle, which mediates mechanical and electrochemical integration between the individual cardiomyocytes. Consist of three different kinds of substructures: adherens junctions, desmosomes and gap junctions [goid 14704] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence TAS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IDA]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 32956] [evidence IMP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 33554] [evidence IDA]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IEA]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 8805275] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57113774-S	ILMN_282424	V1RE26	NM_001008903.1	NM_001008903.1		494253	57113774	NM_001008903.1	V1re26	NP_001008903.1	ILMN_1368541	0004920711	S	668	GCTCCAGAACATCTCCTGAATCCAGAGCTACCCAGAGGATACTGACCCTT	1	+	57124525-57124574	1q12	Rattus norvegicus vomeronasal 1 receptor, E26 (V1re26), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19705454-S	ILMN_53811	MX2	NM_134350.2	NM_134350.2		286918	71534282	NM_134350.2	Mx2	NP_599177.2	ILMN_1355920	0006770594	S	2015	GACACCAGTGAGAAGAGGAGATTCCTGAAGGAGCGGTTGGCAAGGCTGGC	11	+	37572166-37572215	11q12	Rattus norvegicus myxovirus (influenza virus) resistance 2 (Mx2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Mx3	Mx3
Rattus norvegicus	RefSeq	GI_62651721-S	ILMN_265064	LSM7_PREDICTED	XM_001076086.1	XM_001076086.1		362829	109481547	XM_001076086.1	Lsm7_predicted	XP_001076086.1	ILMN_1354878	0002340300	S	350	GTGGCCCAGCCCCAGGGGCCTTCCTTCTATGGGGTGAACTTCTGTTTGAT				7q11	PREDICTED: Rattus norvegicus LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641301-S	ILMN_277119	RGD1564195_PREDICTED	XM_001078254.1	XM_001078254.1		361651	109462877	XM_001078254.1	RGD1564195_predicted	XP_001078254.1	ILMN_1362779	0002970161	S	1326	AGGGACTGAGGGAGCCTGAGCGGGCCTTGTTTACAGCTTCTTCCCTACTC				1q36	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1564195_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41152509-S	ILMN_279187	PRG-3	NM_201271.1	NM_201271.1		298062	41152509	NM_201271.1	Prg-3	NP_958428.1	ILMN_1368196	0005550286	S	942	CCCGTGGAGTTCCTCTGATGGCTTTCCCAAGGATAGAGAGCCCGCTGGAA	5	+	66107808-66107856:66115185-66115185	5q22	Rattus norvegicus plasticity-related gene 3 (Prg-3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655340-S	ILMN_64197	CAB39_PREDICTED	XM_217464.4	XM_217464.4		301574	109486302	XM_217464.4	Cab39_predicted	XP_217464.2	ILMN_1359804	0000870441	S	3234	GGTGACAGCAGCCATTACACCGAATGGAAGGGGTGTCTTGTTGCCTAGCC	9	+	84589867-84589916	9q35	PREDICTED: Rattus norvegicus calcium binding protein 39 (predicted) (Cab39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650822-S	ILMN_274592	SIX6_PREDICTED	XM_001080657.1	XM_001080657.1		314221	109479515	XM_001080657.1	Six6_predicted	XP_001080657.1	ILMN_1360151	0002690176	S	1284	CGCCTGCCCTTGAGTCTCCTGTGGGTATTTCATTTGTCGAAAGGACGGTG				6q24	PREDICTED: Rattus norvegicus sine oculis-related homeobox 6 homolog (Drosophila) (predicted) (Six6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079096	ILMN_283550	TIMD2	NM_001013855.1	NM_001013855.1		287222	62079096	NM_001013855.1	Timd2	NP_001013877.1	ILMN_1370578	0006860603	S	690	AGAACAAACACAGACTCACAGATCAGAAGCCACTACATATTATCCAGATC	10	-	31775929-31775953:31778492-31778516	10q21	Rattus norvegicus T-cell immunoglobulin and mucin domain containing 2 (Timd2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC108812	MGC108812
Rattus norvegicus	RefSeq	GI_8394336-S	ILMN_294930	SFTPA1	NM_017329.1	NM_017329.1		24773	8394336	NM_017329.1	Sftpa1	NP_059025.1	ILMN_1356952	0004560082	S	1387	TGGGTCTGGAGGTGCCATCTTGACCTTGAACTAACAGCAGCCACCCTGGG	16	+	17574169-17574218	16p14	Rattus norvegicus surfactant, pulmonary-associated protein A1 (Sftpa1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; Any process that modulates the surface tension of a liquid. Surface tension is the property that makes a liquid behave as if it had an elastic skin on its surface at the interface with a gas or an immiscible liquid [goid 50828] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	MGC105453; Sftp1; Sftpa; SP-A; Sftpl	MGC105453; Sftp1; Sftpa; SP-A; Sftpl
Rattus norvegicus	RefSeq	GI_62658498-S	ILMN_298307	MMD2	NM_001037217.1	NM_001037217.1		304301	82617611	NM_001037217.1	Mmd2	NP_001032294.1	ILMN_1356032	0002350348	S	1739	GGGGCAGGGTCTTCGCCTATTAGAATGAGTGGAATGCCTCCATCCCTCAA	12	+	12405704-12405753	12p11	Rattus norvegicus monocyte to macrophage differentiation-associated 2 (Mmd2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62656186-S	ILMN_52988	TMEM11_PREDICTED	XM_220530.4	XM_220530.4		303196	109488170	XM_220530.4	Tmem11_predicted	XP_220530.3	ILMN_1371322	0002650338	S	1732	CCACAGGGCCCACAGGACTCAGATTCCCTACAGCAACACTGGGTTTTCTC	10	-	47010461-47010510	10q22	PREDICTED: Rattus norvegicus transmembrane protein 11 (predicted) (Tmem11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758323-S	ILMN_278105	PICALM	NM_053554.1	NM_053554.1		89816	16758323	NM_053554.1	Picalm	NP_446006.1	ILMN_1374519	0000580239	S	1709	GGAGGATCTAACTGGCAACCAAAGGTCGCACCAACAACTGCCTGGAGTGC	1	+	146819083-146819132	1q32	Rattus norvegicus phosphatidylinositol binding clathrin assembly protein (Picalm), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes [goid 30118] [evidence IEA]; A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes [goid 30118] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IEA]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IDA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IEA]	Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IDA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence ISS]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IEA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [pmid 11161218] [evidence IDA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [pmid 11161218] [evidence IDA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence ISS]	Calm; MGC114290	Calm; MGC114290
Rattus norvegicus	RefSeq	GI_62653624-S	ILMN_295656	RBM7_PREDICTED	XM_001066319.1	XM_001066319.1		315634	109484640	XM_001066319.1	Rbm7_predicted	XP_001066319.1	ILMN_1368670	0003830064	S	824	TGATAACAGAAGGGACAGTAGTAGAGGTGGAAAGTGGCCCTCATCCCGAC				8q23	PREDICTED: Rattus norvegicus RNA binding motif protein 7 (predicted) (Rbm7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649379-S	ILMN_285862	GLIS1_PREDICTED	XM_001066448.1	XM_001066448.1		298732	109476962	XM_001066448.1	Glis1_predicted	XP_001066448.1	ILMN_1354204	0002690129	S	2382	CAACCCCTTGCGACCCAGCACCTACTCCAGCCTCAGCACACCTTTATCTG				5q35	PREDICTED: Rattus norvegicus GLIS family zinc finger 1 (predicted) (Glis1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576322-S	ILMN_268005	OLR1522	NM_001000040.1	NM_001000040.1		287614	47576322	NM_001000040.1	Olr1522	NP_001000040.1	ILMN_1373028	0002260450	S	882	GCAGGCAGCCATGAAGAGACTAGCAAAGCGCTTAGCAATTTGCAACAGGG	10	-	76189994-76190043	10q26	Rattus norvegicus olfactory receptor 1522 (Olr1522), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1522	Olr1522
Rattus norvegicus	RefSeq	GI_62653805-S	ILMN_48556	LCTL_PREDICTED	XM_236334.3	XM_236334.3		315750	62653805	XM_236334.3	Lctl_predicted	XP_236334.3	ILMN_1356001	0004120273	S	3328	TCACAGCCAACGGGTTTCCAAACTCACAAGAGAGCAACACGGTGCCAAGG				8q24	PREDICTED: Rattus norvegicus lactase-like (predicted) (Lctl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408319-S	ILMN_281823	UNC13B	NM_022862.1	NM_022862.1		64830	12408319	NM_022862.1	Unc13b	NP_074053.1	ILMN_1348784	0006760364	S	6353	CCGGATTCTGTCTCAGAGGAGCAATGATGAGGTAGCCCGAGAGTTCGTGA	5	+	59768670-59768719	5q22	Rattus norvegicus unc-13 homolog B (C. elegans) (Unc13b), transcript variant 1, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The formation of SNARE-containing complexes, bringing synaptic vesicle membrane and plasma membranes into close proximity and thereby facilitating membrane fusion [goid 16082] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Unc13h2; Munc13-2	Unc13h2; Munc13-2
Rattus norvegicus	RefSeq	GI_62652347-S	ILMN_64724	LOC299968	XM_235358.2	XM_235358.2		299968	62652347	XM_235358.2	LOC299968	XP_235358.2	ILMN_1362750	0006650400	S	1185	TTCGCCCCCGGGAAGAAGAAACATTTCCCCGAGCGCACTCATCAGCCCTC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC299968), mRNA.					
Rattus norvegicus	RefSeq	GI_62662523-I	ILMN_56433	GTPBP3_PREDICTED	XM_577500.1	XM_577500.1		290633	62662523	XM_577500.1	Gtpbp3_predicted	XP_577500.1	ILMN_1375414	0002190347	S	17	CCCTGTTTCACAGATTGAAAGTAACTCGAAGCCCCGGGTGCCTATCCCGG				16p14	PREDICTED: Rattus norvegicus GTP binding protein 3 (predicted) (Gtpbp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865629-A	ILMN_284082	SERPINC1	NM_001012027.1	NM_001012027.1		304917	58865629	NM_001012027.1	Serpinc1	NP_001012027.1	ILMN_1376483	0000580184	S	1156	GCAAGACATGGGCCTTGTTGATCTCTTCAGCCCTGAGAAGTCCCAACTCC	13	+	76558625-76558674	13q22	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1 (Serpinc1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IMP]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31343431-S	ILMN_301344	GRIK3	NM_181373.2	NM_181373.2		298521	31343431	NM_181373.2	Grik3	NP_852038.1	ILMN_1352169	0005050270	S	3470	TCGGCAACACGAAAAGAGGTGTGGGAAGGAGGGGGGTTGGCATGGGAGAA	5	+	145057883-145057932	5q36	Rattus norvegicus glutamate receptor, ionotropic, kainate 3 (Grik3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [pmid 16420445] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence NAS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [pmid 11124978] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [pmid 16420445] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with glutamate to initiate a change in cell activity [goid 8066] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [pmid 11124978] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]	GluR7	GluR7
Rattus norvegicus	RefSeq	GI_62659709-S	ILMN_65352	ATF6_PREDICTED	XM_222871.3	XM_222871.3		304962	62659709	XM_222871.3	Atf6_predicted	XP_222871.3	ILMN_1370389	0004150524	S	2781	GGGGAAGCAGCAGTCCTTGTCAGCTGGCGAGCAGTGGACACTGCCTTGAT				13q24	PREDICTED: Rattus norvegicus activating transcription factor 6 (predicted) (Atf6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639178-S	ILMN_64695	LOC499102	XM_574393.1	XM_574393.1		499102	62639178	XM_574393.1	LOC499102	XP_574393.1	ILMN_1354670	0003290438	S	220	GTGCTTTCCTGCTGGGGGTCCTTGCCGTGGGGCTGGGCCTGTGCACATAT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A830041P22 gene (LOC499102), mRNA.					
Rattus norvegicus	RefSeq	GI_62653771-S	ILMN_270062	BRUNOL6_PREDICTED	XM_001075067.1	XM_001075067.1		300758	109484826	XM_001075067.1	Brunol6_predicted	XP_001075067.1	ILMN_1371065	0004610022	S	1683	CTGGCTGAGGATCGACTGATCTAAGGGAACCAGCAGAGAGCCTCGGGGGT				8q24	PREDICTED: Rattus norvegicus bruno-like 6, RNA binding protein (Drosophila) (predicted) (Brunol6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654215-S	ILMN_262371	CPNE4_PREDICTED	XM_001070003.1	XM_001070003.1		367160	109485207	XM_001070003.1	Cpne4_predicted	XP_001070003.1	ILMN_1373642	0000840215	S	1967	CCAGCTGCCCTTGCAAAGAGCGTGTTGGCTGAAGTCCCAAATCAAGTCGT				8q32	PREDICTED: Rattus norvegicus copine IV (predicted), transcript variant 3 (Cpne4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576956-S	ILMN_273931	OLR257	NM_001001038.1	NM_001001038.1		405924	47576956	NM_001001038.1	Olr257	NP_001001038.1	ILMN_1351970	0001090026	S	765	CGGGACCGTCACGTTCATTTATGTGATGCCAAAGTCCACCTTCTCCACTG	1	-	165754758-165754807	1q33	Rattus norvegicus olfactory receptor 257 (Olr257), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr257	Olr257
Rattus norvegicus	RefSeq	GI_62667119-S	ILMN_281604	RGD1566265_PREDICTED	XM_001059999.1	XM_001059999.1		363487	109512204	XM_001059999.1	RGD1566265_predicted	XP_001059999.1	ILMN_1359801	0007050039	S	668	GAACTACCACAGGGTCAGACAGGGTCTGTTGGTGCAAGTGTTGCTTCTAC				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610002M06 (predicted) (RGD1566265_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645999-S	ILMN_286489	CSTL1_PREDICTED	XM_001055906.1	XM_001055906.1		296220	109470965	XM_001055906.1	Cstl1_predicted	XP_001055906.1	ILMN_1365497	0004610014	S	248	GGGGGGCTTCAAGGAGAAGGCCACGAGCCAGAAAAACATCAACTCGACAC				3q41	PREDICTED: Rattus norvegicus cystatin-like 1 (predicted), transcript variant 2 (Cstl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27703533-S	ILMN_286489	CSTL1_PREDICTED	XM_001055906.1	XM_001055906.1		296220	109470965	XM_001055906.1	Cstl1_predicted	XP_001055906.1	ILMN_2039591	0003120221	S	521	CACTGTACCCTGGATGAACTACTACCAGCTCTGGAACAACTCCTGTCAGG				3q41	PREDICTED: Rattus norvegicus cystatin-like 1 (predicted), transcript variant 2 (Cstl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799414-S	ILMN_289478	PGF	NM_053595.2	NM_053595.2		94203	56799414	NM_053595.2	Pgf	NP_446047.1	ILMN_1374315	0004230088	S	1260	GGACAGAGCTCGCCTGTGGGCTTTGCCTGTCAGCCTAGAAGTTCACGCTT	6	-	109215793-109215842	6q31	Rattus norvegicus placental growth factor (Pgf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence TAS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IMP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Interacting selectively with any vascular endothelial growth factor receptor [goid 5172] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	Plgf; MGC93298	Plgf; MGC93298
Rattus norvegicus	RefSeq	GI_47777723-S	ILMN_287948	OLR526	NM_001001375.1	NM_001001375.1		295781	47777723	NM_001001375.1	Olr526	NP_001001375.1	ILMN_1363524	0006760152	S	38	TCCTCATGGGGCTGACAGATTCCAAAGAGTTACAGCTGGTCCTCGCTGTG	3	+	70216858-70216907	3q24	Rattus norvegicus olfactory receptor 526 (Olr526), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr526	Olr526
Rattus norvegicus	RefSeq	GI_62641752-S	ILMN_278595	PCNXL3	XM_001074181.1	XM_001074181.1		309167	109463392	XM_001074181.1	Pcnxl3	XP_001074181.1	ILMN_1351956	0006200731	S	5438	GCTGGACCACAGGACTGATTGGCTTTGGCTCTGGTGTCTGCACCCTGATA				1q43	PREDICTED: Rattus norvegicus pecanex-like 3 (Drosophila) (Pcnxl3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47777745-S	ILMN_266157	OLR1090	NM_001001379.1	NM_001001379.1		299553	47777745	NM_001001379.1	Olr1090	NP_001001379.1	ILMN_1350979	0000110575	S	461	GTGGCTCAGTCATGGGGACAGTGGTGACAACAGCCGTTTTCAACCTCACA	7	-	13938672-13938721	7q11	Rattus norvegicus olfactory receptor 1090 (Olr1090), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1090	Olr1090
Rattus norvegicus	RefSeq	GI_62660136-S	ILMN_286875	LOC360912	XM_001060858.1	XM_001060858.1		360912	109500263	XM_001060858.1	LOC360912	XP_001060858.1	ILMN_1355913	0006620551	S	2250	GCAGGTGCTGGGACTAATAAATGGACCGCTAGAAGACTGCCACAGCCATC				14p22	PREDICTED: Rattus norvegicus similar to DNA helicase HEL308 (LOC360912), mRNA.					
Rattus norvegicus	RefSeq	GI_62645703-S	ILMN_48860	RGD1561057_PREDICTED	XM_578135.2	XM_578135.2		502640	109468355	XM_578135.2	RGD1561057_predicted	XP_578135.2	ILMN_1355958	0000840575	S	1378	CATCCGAAGAGCAATAGCAATGGATACAGCCCACAGGAGGAGGGTGGACA	3	-	62103940-62103989	3q24	PREDICTED: Rattus norvegicus similar to ceramide kinase-like (predicted) (RGD1561057_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576048-S	ILMN_265055	OLR142	NM_001000544.1	NM_001000544.1		365330	47576048	NM_001000544.1	Olr142	NP_001000544.1	ILMN_1357952	0002340278	S	893	CCAAGGAGATCCGCAGAGGGATGCTCAAAGTCTTCCATAAATCCCAGACC	1	-	161872357-161872406	1q32	Rattus norvegicus olfactory receptor 142 (Olr142), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161966238-161965294_ORF; Olr142	ratchr1-161966238-161965294_ORF; Olr142
Rattus norvegicus	RefSeq	GI_62658189-S	ILMN_55020	ARVCF_PREDICTED	XM_221276.3	XM_221276.3		303798	62658189	XM_221276.3	Arvcf_predicted	XP_221276.3	ILMN_1360364	0000380156	S	4970	ACAGTGAGGGCTGCTCCAAGAGTCCAGACAGGGAAGTTTAGGAGGCGGCT					PREDICTED: Rattus norvegicus armadillo repeat gene deleted in velo-cardio-facial syndrome (predicted) (Arvcf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262163-S	ILMN_274840	RPL35A	NM_021264.2	NM_021264.2		57809	54262163	NM_021264.2	Rpl35a	NP_067087.1	ILMN_1351542	0004280079	S	105	GCTACAAGCGAGGCCTCCGGAACCAAAGAGAGCACACGGCTCTTCTTAAA	1	-	136165148-136165197	1q31	Rattus norvegicus ribosomal protein L35a (Rpl35a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence TAS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	Interacting selectively with transfer RNA [goid 49] [evidence TAS]; Interacting selectively with transfer RNA [goid 49] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72845	MGC72845
Rattus norvegicus	RefSeq	GI_62661131-S	ILMN_62614	RGD1305475_PREDICTED	XM_223828.4	XM_223828.4		305714	109501377	XM_223828.4	RGD1305475_predicted	XP_223828.4	ILMN_1351188	0004670068	S	824	GACAGGCAATAGCTGCATGGGCTTCCTGGGTTCGATTTCAACTTCGGCAG	15	+	12826989-12827038	15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500006O09 (predicted) (RGD1305475_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424319-S	ILMN_65142	SLCO4A1	NM_133608.1	NM_133608.1		171144	19424319	NM_133608.1	Slco4a1	NP_598292.1	ILMN_1373636	0006510161	S	2121	CAGTCCTCAGCCTCTGACAGCCCCACAGAACAGCTCCAGAGCAACGTCTA				3q43	Rattus norvegicus solute carrier organic anion transporter family, member 4a1 (Slco4a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of thyroid hormones from one side of the membrane to the other. Thyroid hormone are any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 15349] [evidence IDA]	Slc21a12; OATP-E	Slc21a12; OATP-E
Rattus norvegicus	RefSeq	GI_62658473-S	ILMN_51946	RGD1563095_PREDICTED	XM_221915.4	XM_221915.4		288485	109495195	XM_221915.4	RGD1563095_predicted	XP_221915.4	ILMN_1371935	0002630047	S	1678	CTCTGCAGCGAGTGCGGAAAGAGCTTCTCGCAGCATTCCAACCTAGTGAC	12	+	11635240-11635289	12p11	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434J1015.1 - human (fragment) (predicted) (RGD1563095_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665024-S	ILMN_50476	LOC361382	XM_346972.2	XM_346972.2		361382	62665024	XM_346972.2	LOC361382	XP_346973.2	ILMN_1364667	0005420008	S	809	TCCCTTAACCTTCTGCACACATCGGGAAGGCAGGGCCAATCTGAACCCCC					PREDICTED: Rattus norvegicus hypothetical LOC361382 (LOC361382), mRNA.					
Rattus norvegicus	RefSeq	GI_62659992-S	ILMN_60921	CR2_PREDICTED	XM_213977.4	XM_213977.4		289395	109498402	XM_213977.4	Cr2_predicted	XP_213977.4	ILMN_1356697	0001770022	S	3849	GGGAAGTCCACAGAGCCAGTGCCAGGATGAAAACCAATGGAACCCTCCGC	13	-	111087681-111087730	13q27	PREDICTED: Rattus norvegicus complement receptor 2 (predicted) (Cr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657985-S	ILMN_278042	LMLN_PREDICTED	XM_001072368.1	XM_001072368.1		363795	109494498	XM_001072368.1	Lmln_predicted	XP_001072368.1	ILMN_1359885	0004850162	S	1713	CTGGGGGAGCGGGTGCTACCAGGTTTCTTGTTCTCCTCAAGGTCTAAAGG				11q22	PREDICTED: Rattus norvegicus leishmanolysin-like (metallopeptidase M8 family) (predicted) (Lmln_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17105343-S	ILMN_288852	KBTBD10	NM_057191.1	NM_057191.1		117537	17105343	NM_057191.1	Kbtbd10	NP_476539.1	ILMN_1365561	0002900010	S	1930	CTGTGCAGTTCCCCGGGAGATAAAACAGTGTAACCGAATCCCCAAGGTGT	3	+	51828781-51828830	3q21	Rattus norvegicus kelch repeat and BTB (POZ) domain containing 10 (Kbtbd10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding [goid 31143] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process involved in the controlled movement of a cell [goid 6928] [evidence NAS]; Any process that modulates the frequency, rate or extent of the assembly of pseudopodia from the lateral side of the cell [goid 31275] [evidence IMP]	Catalysis of the reaction: DNA (containing 6-O-methylguanine) + (protein)-L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L-cysteine [goid 3908] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Sarcosin; Krp1	Sarcosin; Krp1
Rattus norvegicus	RefSeq	GI_13592004-S	ILMN_300692	MVD	NM_031062.1	NM_031062.1		81726	13592004	NM_031062.1	Mvd	NP_112324.1	ILMN_1368863	0001690332	S	1525	CTCAGGCCACAGTTTCTTTGAGAAGCCTCCTGGTGAGGGTAGGGGCTGTG	19	-	52722405-52722454	19q12	Rattus norvegicus mevalonate (diphospho) decarboxylase (Mvd), mRNA.	The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence NAS]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide [goid 16310] [evidence IEA]	Catalysis of the reaction: ATP + (R)-5-diphosphomevalonate = ADP + phosphate + isopentenyl diphosphate + CO2 [goid 4163] [evidence TAS]; Catalysis of the reaction: ATP + (R)-5-diphosphomevalonate = ADP + phosphate + isopentenyl diphosphate + CO2 [goid 4163] [evidence IEA]; Catalysis of the reaction: ATP + (R)-5-diphosphomevalonate = ADP + phosphate + isopentenyl diphosphate + CO2 [goid 4163] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	Mvpd	Mvpd
Rattus norvegicus	RefSeq	GI_62659946-S	ILMN_279340	LOC690345	XM_001074165.1	XM_001074165.1		690345	109498313	XM_001074165.1	LOC690345	XP_001074165.1	ILMN_1363426	0005360408	S	1008	AGTCATCGGCGTCGTCACCCTGCCTGTGCACTCAGAACTGGCATCTGGCT	13	+	98133329-98133378	13q26	PREDICTED: Rattus norvegicus similar to Signal recognition particle 9 kDa protein (SRP9) (LOC690345), mRNA.					
Rattus norvegicus	RefSeq	GI_27465614-S	ILMN_284557	STK16	NM_173142.1	NM_173142.1		286927	27465614	NM_173142.1	Stk16	NP_775165.1	ILMN_1365130	0003850537	S	1265	CTGATCTACACAAGATGGGTCTCACCATTAGGGGCAAGGATGGTGGGTCC	9	+	74494929-74494978	9q33	Rattus norvegicus serine/threonine kinase 16 (Stk16), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	F52; PKL12	F52; PKL12
Rattus norvegicus	RefSeq	GI_62662264-S	ILMN_59044	LOC498593	XM_573870.1	XM_573870.1		498593	62662264	XM_573870.1	LOC498593	XP_573870.1	ILMN_1352880	0006450164	S	572	ACAGGGGACCATGTGAACACAGAGTTGTCTAGGTAGAGATGCACATGTTC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC498593), mRNA.					
Rattus norvegicus	RefSeq	GI_62664489-S	ILMN_60654	RGD1559715_PREDICTED	XM_574157.2	XM_574157.2		498871	109506667	XM_574157.2	RGD1559715_predicted	XP_574157.1	ILMN_1354612	0006510446	S	310	GTGGTGGAGACAACCATGTGGAGACACAAATACCAACACCCCAGTATGCC	18	+	56204195-56204244	18q12.1	PREDICTED: Rattus norvegicus similar to MGC108823 protein (predicted) (RGD1559715_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647020-S	ILMN_262809	LOC500082	XM_001065865.1	XM_001065865.1		500082	109473263	XM_001065865.1	LOC500082	XP_001065865.1	ILMN_1374489	0006510195	S	3372	GCCCATTGAGAAGGGGGCAGGCTACCGGAGATTTGTGGAGTACACGTTCC					PREDICTED: Rattus norvegicus similar to Diacylglycerol kinase iota (Diglyceride kinase iota) (DGK-iota) (DAG kinase iota), transcript variant 2 (LOC500082), mRNA.		The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644273-S	ILMN_67659	LOC295420	XM_227654.3	XM_227654.3		295420	62644273	XM_227654.3	LOC295420	XP_227654.3	ILMN_1350706	0000450408	S	1159	CCACTGTGGATCTGACATGCCGCTAAAGGACATCCTGGGCTACACTGAGG				2q41	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC295420), mRNA.					
Rattus norvegicus	RefSeq	GI_62644538-S	ILMN_58291	MCOLN2_PREDICTED	XM_214737.3	XM_214737.3		292168	62644538	XM_214737.3	Mcoln2_predicted	XP_214737.3	ILMN_1362411	0002370332	S	2164	TCCTGAAGGAGAGCGGTAGCAAAGAAGGGTACCAGAAGGAGCCATCAGCC				2q44	PREDICTED: Rattus norvegicus mucolipin 2 (predicted) (Mcoln2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650421	ILMN_276852	RGD1559683_PREDICTED	XM_001069658.1	XM_001069658.1		500620	109479077	XM_001069658.1	RGD1559683_predicted	XP_001069658.1	ILMN_1649736	0000060180	S	426	CTGTGCCCCGTGTTCCTTACTTTGTACTGCCTGTGAAGGAGCCAGACCGG				6q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001C02 (predicted) (RGD1559683_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718644-S	ILMN_51249	LOC497841	XM_579384.1	XM_579384.1		497841	62718644	XM_579384.1	LOC497841	XP_579384.1	ILMN_1357368	0002510072	S	4931	TGGCCCGAGGCAGAGGAATGTCAGGATCAGAAGAACCAGAAACAGTGCGA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_016994 (LOC497841), mRNA.					
Rattus norvegicus	RefSeq	GI_8392851-S	ILMN_271140	ADCY8	NM_017142.1	NM_017142.1		29241	8392851	NM_017142.1	Adcy8	NP_058838.1	ILMN_1350196	0004610736	S	4196	GGGCTTTGCCTTCGACTACCGGGGAGAGATATATGTGAAGGGCATCAGCG	7	-	101958162-101958211	7q33	Rattus norvegicus adenylate cyclase 8 (brain) (Adcy8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IDA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence ISS]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin [goid 8294] [evidence IDA]	Ac8	Ac8
Rattus norvegicus	RefSeq	GI_58865501-A	ILMN_292313	CERCAM	NM_001011962.1	NM_001011962.1		296616	58865501	NM_001011962.1	Cercam	NP_001011962.1	ILMN_1376709	0000780110	S	2445	AGGACAGGGGGGCCTCAGCCTTGGGGGTTTCAAGTTGGACAGAACCCAGA	3	+	8871151-8871200	3p12	Rattus norvegicus cerebral endothelial cell adhesion molecule (Cercam), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria [goid 9103] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665418-S	ILMN_47865	MC1R_PREDICTED	XM_226554.2	XM_226554.2		292083	62665418	XM_226554.2	Mc1r_predicted	XP_226554.1	ILMN_1361244	0004850128	S	879	GCATTGCCCGGCTCCACAAAAGGCGGCACTCCATCCGACAAGGCTTCTGT					PREDICTED: Rattus norvegicus melanocortin 1 receptor (predicted) (Mc1r_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666009-S	ILMN_53786	LOC499437	XM_574760.1	XM_574760.1		499437	62666009	XM_574760.1	LOC499437	XP_574760.1	ILMN_1350859	0006840273	S	2564	CATGTGGTTAGCAGAGAAGTGAGGACCAGAAGGCCAGCAGTAGCCCTGTC				20q11	PREDICTED: Rattus norvegicus similar to minichromosome maintenance protein 8 isoform 1 (LOC499437), mRNA.					
Rattus norvegicus	RefSeq	GI_62666651-A	ILMN_263005	IL13RA2	NM_133538.1	NM_133538.1		171060	19424197	NM_133538.1	Il13ra2	NP_598222.1	ILMN_1376826	0005900195	S	1569	GGAGTGAATGGAGTGAAGAGGAATGCTGGGAAGGTTACACAGGGCCAGAC	X	-	30505931-30505980	Xq14	Rattus norvegicus interleukin 13 receptor, alpha 2 (Il13ra2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62651996-S	ILMN_70033	RGD1564146_PREDICTED	XM_576209.2	XM_576209.2		500820	109480448	XM_576209.2	RGD1564146_predicted	XP_576209.2	ILMN_1375052	0002680075	S	2138	TGCATCCTGTGGAAGACGGTGGAACTGATAACCCGGCCTTCAACCACGTG	7	+	25626320-25626369	7q13	PREDICTED: Rattus norvegicus similar to solute carrier family 5 (iodide transporter), member 8 (predicted) (RGD1564146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659873-S	ILMN_279170	LOC690295	XM_001073998.1	XM_001073998.1		690295	109498311	XM_001073998.1	LOC690295	XP_001073998.1	ILMN_1350401	0004920128	S	909	CATTGAGGGAGCACGATGGGATCCGCAACAGGAAGTGCTGGAAGACGCAC	13	+	97811126-97811175	13q26	PREDICTED: Rattus norvegicus similar to dynein, axonemal, heavy polypeptide 1 (LOC690295), mRNA.	Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662814-S	ILMN_282227	RGD1562965_PREDICTED	XM_001070627.1	XM_001070627.1		498650	109504360	XM_001070627.1	RGD1562965_predicted	XP_001070627.1	ILMN_1360757	0005340286	S	2401	CCTCACCCCGTGAAGCCGATGAACACAACAGCCCCCAAGATAACAAACTC				16q12.3-q12.4	PREDICTED: Rattus norvegicus similar to Rab coupling protein isoform 3 (predicted) (RGD1562965_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661668-S	ILMN_288545	ADAMDEC1_PREDICTED	XM_214222.3	XM_214222.3		290338	62661668	XM_214222.3	Adamdec1_predicted	XP_214222.3	ILMN_1359236	0000430044	S	1478	GCAGAAGTCCAGAACCAGTGTCTGCCAGGAAGTCTGCCGAGCTCCACTTT	15	-	48251880-48251929	15p11	PREDICTED: Rattus norvegicus ADAM-like, decysin 1 (predicted) (Adamdec1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27673891-S	ILMN_295899	CDC16	NM_001024744.1	NM_001024744.1		290875	67078527	NM_001024744.1	Cdc16	NP_001019915.1	ILMN_2039356	0001570259	S	2122	CAGCCTGCGTTAAATGTGGGACAGCAGACCCTGGCCGCAGATGTTCTCTG				16q12.5	Rattus norvegicus CDC16 cell division cycle 16 homolog (S. cerevisiae) (Cdc16), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence IEA]	The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662940-S	ILMN_295899	CDC16	NM_001024744.1	NM_001024744.1		290875	67078527	NM_001024744.1	Cdc16	NP_001019915.1	ILMN_1365596	0004570014	S	1852	CGGGCTTGCACCTCTGGAAAACGCCACTAAAACCCCGGAGTCCAGACCTT	16	-	80628345-80628377:80628378-80628394	16q12.5	Rattus norvegicus CDC16 cell division cycle 16 homolog (S. cerevisiae) (Cdc16), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence IEA]	The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758401-S	ILMN_59676	BAT3	NM_053609.2	NM_053609.2		94342	77020271	NM_053609.2	Bat3	NP_446061.2	ILMN_1358540	0006200463	S	3359	TTATCCAGCAGGACATTCAGAGCCAGCGGAAGGTGAAACCTCAGCCGCCC	20	-	3740633-3740682	20p12	Rattus norvegicus HLA-B-associated transcript 3 (Bat3), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEP]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656889-S	ILMN_279868	HOXB7	NM_001017480.1	NM_001017480.1		497985	62945315	NM_001017480.1	Hoxb7	NP_001017480.1	ILMN_1352268	0006420075	S	1115	CTGAGCCTGGTGCATTTGGCTGCTGATTCTAGCTCCTAACCATGAGCCTC	10	+	85020760-85020809	10q31	Rattus norvegicus homeo box B7 (Hoxb7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605755-S	ILMN_269074	WHSC2	NM_001008339.1	NM_001008339.1		305455	56605755	NM_001008339.1	Whsc2	NP_001008340.1	ILMN_1349806	0006660102	S	2041	GGTGTGAGGGCGGCTATGACCAGCCTTGATGCCACTACCTACCAGGGATT	14	+	82526765-82526814	14q21	Rattus norvegicus Wolf-Hirschhorn syndrome candidate 2 (human) (Whsc2), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]			MGC95174	MGC95174
Rattus norvegicus	RefSeq	GI_62651000-A	ILMN_65242	CALM1	XM_579543.1	XM_579543.1		24242	62651000	XM_579543.1	Calm1	XP_579543.1	ILMN_1376284	0003290484	S	3441	CTTTGGCAGCGACCAGAGTTACACTGATGTGTCTCAACCGACCCACTCGG				6q32	PREDICTED: Rattus norvegicus calmodulin 1 (Calm1), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells [goid 32465] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence IEA]	 [goid 5246] [evidence NAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence IEA]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62078688-S	ILMN_287228	CYYR1	NM_001013980.1	NM_001013980.1		304138	62078688	NM_001013980.1	Cyyr1	NP_001014002.1	ILMN_1374917	0006650519	S	5017	CATGGGAACTGTCCACACTATCTCTCTTTGAGTTGGTTATGACTCGCCTG	11	-	25037032-25037081	11q11	Rattus norvegicus cysteine/tyrosine-rich 1 (Cyyr1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62659372-S	ILMN_276895	PKP1_PREDICTED	XM_001063502.1	XM_001063502.1		304822	109498681	XM_001063502.1	Pkp1_predicted	XP_001063502.1	ILMN_1372531	0000730270	S	4285	GGTAACTTCTTCCATGACCTCAAGCTGGCCAGGTAGGCTGGGCCCAACAT				13q13	PREDICTED: Rattus norvegicus plakophilin 1 (predicted) (Pkp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742825-S	ILMN_265715	ATP6V1B2	NM_057213.2	NM_057213.2		117596	55742825	NM_057213.2	Atp6v1b2	NP_476561.1	ILMN_1360084	0002900450	S	2533	GCTGTGTGTTCTCAGGTGCAGCCATAACTTCCCCACTCCGAGCATTCCAC	16	-	22320537-22320586	16p14	Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit B2 (Atp6v1b2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6754] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion [goid 7035] [evidence TAS]; The transport of protons against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport [goid 15988] [evidence IEA]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence TAS]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	Atp6b1b2; Vatb; Atp6b2	Atp6b1b2; Vatb; Atp6b2
Rattus norvegicus	RefSeq	GI_62666600-S	ILMN_62531	LOC317366	XM_228778.3	XM_228778.3		317366	62666600	XM_228778.3	LOC317366	XP_228778.3	ILMN_1354345	0002320471	S	2138	ATTGTGTACTGGATGTGGAGAGTGGCGCGTGTGCCCTCCTGTCCCTTCTC					PREDICTED: Rattus norvegicus similar to serine-threonine protein kinase pim-2 isoform 1 (LOC317366), mRNA.					
Rattus norvegicus	RefSeq	GI_47576770-S	ILMN_296872	OLR183	NM_001000181.1	NM_001000181.1		293328	47576770	NM_001000181.1	Olr183	NP_001000181.1	ILMN_1363421	0003710735	S	852	CCCCCCGGCTCTTAACCCTATCATTTATGGGGTGAGAACCAAGCAGATTC	1	-	162782765-162782814	1q33	Rattus norvegicus olfactory receptor 183 (Olr183), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162879143-162878202_ORF; Olr183	ratchr1-162879143-162878202_ORF; Olr183
Rattus norvegicus	RefSeq	GI_62666653-A	ILMN_297342	CAPN6	NM_031808.1	NM_031808.1		83685	13929145	NM_031808.1	Capn6	NP_113996.1	ILMN_1376248	0002100204	S	3245	CCTCCATGAAGTTCTTTCACATCTTTTCCCCAAGCCCCACCTCCAACAAT	X	+	34722120-34722169	Xq14	Rattus norvegicus calpain 6 (Capn6), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659359-S	ILMN_63940	LMOD1_PREDICTED	XM_222660.3	XM_222660.3		304816	62659359	XM_222660.3	Lmod1_predicted	XP_222660.3	ILMN_1348911	0000520132	S	1522	CCCAGCCATCCCCAAAGTCTGCTCCAAAGAACTCACCCAAGAAAGCGAGG				13q13	PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642004-S	ILMN_300772	RGD1562225_PREDICTED	XR_009166.1	XR_009166.1		365417	109463655	XR_009166.1	RGD1562225_predicted		ILMN_1348795	0006620347	S	273	CCACTGGAGCCACTCCTGCTGCTGGTTGCTTTATGCCGAGGCCTTCACTA				1q43	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (predicted) (RGD1562225_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19745175-S	ILMN_64770	PSMC3IP	NM_134458.2	NM_134458.2		140938	77628026	NM_134458.2	Psmc3ip	NP_604453.2	ILMN_1362640	0000130184	S	392	CCTGAGATGCAGACAGAGATTCAGGAGTTGAAGAAGGAGTGTGCTCGCTA	10	-	90109680-90109729	10q32.1	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein (Psmc3ip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an estrogen receptor [goid 30331] [evidence IPI]; Interacting selectively with a glucocorticoid receptor [goid 35259] [evidence IPI]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IPI]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence TAS]; Interacting selectively with an androgen receptor [goid 50681] [evidence IPI]	Tbpip; Gt198	Tbpip; Gt198
Rattus norvegicus	RefSeq	GI_62638696-S	ILMN_62298	LOC502251	XM_577710.1	XM_577710.1		502251	62638696	XM_577710.1	LOC502251	XP_577710.1	ILMN_1353383	0000520592	S	1021	GCTGCACAGCCCAGTCACAGCAAGACCACTATCACAAATGTGCCGTGAGT				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502251), mRNA.					
Rattus norvegicus	RefSeq	GI_47577964-S	ILMN_273938	OLR1111	NM_001000425.1	NM_001000425.1		300205	47577964	NM_001000425.1	Olr1111	NP_001000425.1	ILMN_1358181	0006290750	S	668	TGAGGGCTGTGCTGAGAATACCTTCAGGCCACGGGAGACAGAAAGCCTTC	7	+	137240890-137240939	7q36	Rattus norvegicus olfactory receptor 1111 (Olr1111), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1111	Olr1111
Rattus norvegicus	RefSeq	GI_56605787-S	ILMN_296199	SLC39A3	NM_001008356.1	NM_001008356.1		314637	56605787	NM_001008356.1	Slc39a3	NP_001008357.1	ILMN_1349478	0002810632	S	1190	CTTTCTCAAGTGGTGAGCCCTGAATCCCCAAAGGACACAGAGCGCGTCCC	7	+	10166438-10166453:10166454-10166487	7q11	Rattus norvegicus solute carrier family 39 (zinc transporter), member 3 (Slc39a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence ISS]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence IEA]; Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]	MGC105842	MGC105842
Rattus norvegicus	RefSeq	GI_19424201-S	ILMN_289428	NKG7	NM_133540.1	NM_133540.1		171062	19424201	NM_133540.1	Nkg7	NP_598224.1	ILMN_1360097	0006520132	S	635	CCTTGTGAACAGAAGCCAAGGACATCAGGGTCAGCAGGATGTTTGGAGCC	1	+	93814027-93814034:93814035-93814076	1q22	Rattus norvegicus natural killer cell group 7 sequence (Nkg7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62652776-S	ILMN_272748	APOL9A	NM_001025066.1	NM_001025066.1		503164	68163566	NM_001025066.1	Apol9a	NP_001020237.1	ILMN_1352829	0006450048	S	977	GGTCACCCTCTTGCGTGATGTGGGGAGCCTTGTGAACGAGTCGAAGCAGT	7	-	115473266-115473315	7q34	Rattus norvegicus apolipoprotein L 9a (Apol9a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661880-S	ILMN_66067	LOC290165	XM_224125.3	XM_224125.3		290165	62661880	XM_224125.3	LOC290165	XP_224125.3	ILMN_1360528	0001980538	S	305	CTCTGCCACATACTTCTGTGCAGTCAGGGTGAGAGGAGATAACGTGGAGC				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor V-alpha J-alpha (LOC290165), mRNA.					
Rattus norvegicus	RefSeq	GI_62641200-S	ILMN_267487	GPRC5B_PREDICTED	XM_001078922.1	XM_001078922.1		293546	109462761	XM_001078922.1	Gprc5b_predicted	XP_001078922.1	ILMN_1372612	0006420600	S	2481	GTTGCCTAGCTGCTGGTGACTTCTGGGGTATTTTCCCTTCGCGTGGGTAG				1q35	PREDICTED: Rattus norvegicus G protein-coupled receptor, family C, group 5, member B (predicted) (Gprc5b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641678-S	ILMN_271205	MRPL21_PREDICTED	XM_001067014.1	XM_001067014.1		309140	109463302	XM_001067014.1	Mrpl21_predicted	XP_001067014.1	ILMN_1371996	0002480594	S	434	GACAGACAACTTCACACTCCTCGGCAAGCCACTCCTCGGAAAGGATCTCG				1q42	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L21 (predicted) (Mrpl21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650922	ILMN_278650	WDR22	XM_001080939.1	XM_001080939.1		314273	109479562	XM_001080939.1	Wdr22	XP_001080939.1	ILMN_1651172	0005340184	S	4814	GAGCCAGGGGTGTGTGTCATCTTTCTGAGCTTCGCAGAAGGGAGATGTGC				6q24	PREDICTED: Rattus norvegicus WD repeat domain 22 (Wdr22), mRNA.					
Rattus norvegicus	RefSeq	GI_48675857-S	ILMN_265364	WIPF1	NM_057192.2	NM_057192.2		117538	48675857	NM_057192.2	Wipf1	NP_476540.2	ILMN_1362680	0006860504	S	3756	CAGGTGCATTCCTAAGTCAGGAACGGGGTCACAGCTCAAAGTTGCCATTC	3	-	55944648-55944697	3q23	Rattus norvegicus WAS/WASL interacting protein family, member 1 (Wipf1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IPI]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IEA]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Wip	Wip
Rattus norvegicus	RefSeq	GI_62661386	ILMN_61904	LOC498502	XM_573766.1	XM_573766.1		498502	62661386	XM_573766.1	LOC498502	XP_573766.1	ILMN_1650256	0000070148	S	1144	GATCCCAGGGGCGGCCTCATCAGTCTGTTCTACCTGGCTCCGGGAACAAA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC498502), mRNA.					
Rattus norvegicus	RefSeq	GI_34863281-S	ILMN_291878	CD3E_PREDICTED	XM_001063976.1	XM_001063976.1		315609	109484594	XM_001063976.1	Cd3e_predicted	XP_001063976.1	ILMN_1360963	0000630288	S	596	CCACCTGTTCCCAACCCAGACTATGAGCCCATCCGAAAAGGCCAACGGGA				8q22	PREDICTED: Rattus norvegicus CD3 antigen, epsilon polypeptide (predicted) (Cd3e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654026-S	ILMN_287969	RGD1560646_PREDICTED	XM_001061392.1	XM_001061392.1		315840	109485030	XM_001061392.1	RGD1560646_predicted	XP_001061392.1	ILMN_1364926	0002630647	S	5544	CTGCTTAGATTTACTCTCGGTTGGTCTTGTGATGGGTGACAGAGGCGCAG				8q31	PREDICTED: Rattus norvegicus similar to Myosin VI (predicted) (RGD1560646_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865661-A	ILMN_279745	TDRD3	NM_001012043.1	NM_001012043.1		306066	58865661	NM_001012043.1	Tdrd3	NP_001012043.1	ILMN_1376936	0000430711	S	2310	GGTGACGGACAGCCTCGAAGGTCCACTCGGCCAACACAGCAGTTTTACCA	15	+	69733825-69733874	15q12	Rattus norvegicus tudor domain containing 3 (Tdrd3), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663532-S	ILMN_60558	RGD1564786_PREDICTED	XM_225265.4	XM_225265.4		306889	109504788	XM_225265.4	RGD1564786_predicted	XP_225265.4	ILMN_1373310	0005420154	S	952	GTTGTGCATAAATCCTTTGTGGAGATGAGTGAGGAGGGCACAGAGGCTGC	17	+	37432161-37432210	17p12	PREDICTED: Rattus norvegicus similar to OTTMUSP00000000636 (predicted) (RGD1564786_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34850062-S	ILMN_286597	TERC	NR_001567.1	NR_001567.1		378461	34850062	NR_001567.1	Terc		ILMN_1354115	0000050021	S	317	CGGAACTGGTCCCTGAGTTCGGTGGCTTTCCTGAGATGTGGGAAGTGCAC	2	+	117234762-117234811	2q24	Rattus norvegicus telomerase RNA component (Terc), non-coding RNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits [goid 5697] [evidence ISS]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]; The maintenace of proper telomeric length by the addition of telomeric repeats by telomerase [goid 7004] [evidence TAS]; The maintenace of proper telomeric length by the addition of telomeric repeats by telomerase [goid 7004] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The inherent decline of a multicellular organism over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 10259] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the addition of telomeric repeats by telomerase [goid 32212] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a hemopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells [goid 60218] [evidence ISS]	Provision of the template used by reverse transcriptase to synthesize the G-rich strand of telomeric DNA [goid 332] [evidence TAS]; Provision of the template used by reverse transcriptase to synthesize the G-rich strand of telomeric DNA [goid 332] [evidence ISS]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence [goid 3720] [evidence ISS]	Tr	Tr
Rattus norvegicus	RefSeq	GI_54262181-S	ILMN_263369	RAB3D	NM_080580.2	NM_080580.2		140665	54262181	NM_080580.2	Rab3d	NP_542147.1	ILMN_1350174	0002570408	S	2105	CCAGTGGCTGTCTTCATACAAAGTGAGGGCGTCTGACTACTGGGAGGAAA	8	-	21012346-21012395	8q13	Rattus norvegicus RAB3D, member RAS oncogene family (Rab3d), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence ISS]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IEA]; The methylation of peptidyl-cysteine to form peptidyl-S-methyl-L-cysteine [goid 18125] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC93243	MGC93243
Rattus norvegicus	RefSeq	GI_62651517-S	ILMN_67946	LOC503080	XM_578600.1	XM_578600.1		503080	62651517	XM_578600.1	LOC503080	XP_578600.1	ILMN_1373951	0004610746	S	448	GGCCTTGGACCTCAGTGAAAGTGTCCTGCATGGCTTCTGGCTATGACTTC					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC503080), mRNA.					
Rattus norvegicus	RefSeq	GI_62659972-S	ILMN_59392	LOC498312	XM_341173.2	XM_341173.2		498312	62659972	XM_341173.2	LOC498312	XP_341174.2	ILMN_1353728	0004120546	S	3411	CTGAAGGAGCACAGGCTCCTGTGTCTGGCTGGCGGCTCAGCACTGAAGAA					PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC498312), mRNA.					
Rattus norvegicus	RefSeq	GI_62665852-S	ILMN_299316	RGD1563194_PREDICTED	XR_009316.1	XR_009316.1		294344	109509956	XR_009316.1	RGD1563194_predicted		ILMN_1351834	0001690092	S	573	GCCAACGCCCGGCTCTTTGGCATCTGAGCAAAAAGGACAAAGGAAGTTGC				20p12	PREDICTED: Rattus norvegicus similar to ribosomal protein L13 (predicted) (RGD1563194_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655837-S	ILMN_57230	RPL3L_PREDICTED	XM_213231.3	XM_213231.3		287122	62655837	XM_213231.3	Rpl3l_predicted	XP_213231.3	ILMN_1352391	0001230242	S	2360	GCTGAGGAGACTTTGGGCTGCACGTTGATTTTGTCACACAGGGCAAGGGG				10q12	PREDICTED: Rattus norvegicus ribosomal protein L3-like (predicted) (Rpl3l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656045-S	ILMN_267962	N4BP3	NM_001033893.1	NM_001033893.1		303112	76559918	NM_001033893.1	N4bp3	NP_001029065.1	ILMN_1369045	0005890609	S	1431	GCGCTTTGAGCAGGAGAGGCAGACTTGGCAGGAGGAAAAAGAGAGGGTGC	10	-	37159873-37159922	10q22	Rattus norvegicus Nedd4 binding protein 3 (N4bp3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			C330016o10rik	C330016o10rik
Rattus norvegicus	RefSeq	GI_62638320-S	ILMN_264997	LOC683474	XM_001061932.1	XM_001061932.1		683474	109460388	XM_001061932.1	LOC683474	XP_001061932.1	ILMN_1374966	0001400040	S	1222	GGCCCCGTGACGTGCGTCGTCCCTTTTGATAGCGAAGAGGAAGTGATTGC					PREDICTED: Rattus norvegicus similar to aldehyde dehydrogenase 8 family, member A1, transcript variant 2 (LOC683474), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27669859-S	ILMN_267877	IFITM7_PREDICTED	XM_221637.1	XM_221637.1		288244	27669859	XM_221637.1	Ifitm7_predicted	XP_221637.1	ILMN_1351460	0000430079	S	24	CATTACCGCTGCCACTGGGGGACTACCCCCAAACTATGAAAGAATCGAAG	11	+	34046845-34046894	11q11	PREDICTED: Rattus norvegicus interferon induced transmembrane protein 7 (predicted) (Ifitm7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27730788-S	ILMN_270142	RGD1559475_PREDICTED	XM_001069882.1	XM_001069882.1		498977	109460445	XM_001069882.1	RGD1559475_predicted	XP_001069882.1	ILMN_1350199	0004210441	S	321	CGCTCTTGGAACAAGTGAACACCTTGGTGCCGGTGCTGGACAGCGCTTCT				1p13	PREDICTED: Rattus norvegicus similar to dynactin 3 (predicted) (RGD1559475_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638222-S	ILMN_270142	RGD1559475_PREDICTED	XM_001069882.1	XM_001069882.1		498977	109460445	XM_001069882.1	RGD1559475_predicted	XP_001069882.1	ILMN_1350986	0003190025	S	600	TGTCCCCACCAGGGGAGGTAGGCAGGCCCTCCACCAACCTGACTTTATAA				1p13	PREDICTED: Rattus norvegicus similar to dynactin 3 (predicted) (RGD1559475_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51890225-S	ILMN_287168	IL17RE	NM_001004091.1	NM_001004091.1		362417	51890225	NM_001004091.1	Il17re	NP_001004091.1	ILMN_1369600	0003390398	S	2255	GTCCCGGCTGGAGAGCTAGACCAGGGTTGGAAAGCAGGGCCTACGTGTCA	4	+	149361339-149361388	4q42	Rattus norvegicus interleukin 17 receptor E (Il17re), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC93201	MGC93201
Rattus norvegicus	RefSeq	GI_62666971-S	ILMN_58712	LOC503439	XM_578985.1	XM_578985.1		503439	62666971	XM_578985.1	LOC503439	XP_578985.1	ILMN_1374670	0007100072	S	27	GCTCTGTCCTCCAATGGGACTCTGATAGAAGTGGACCCTTCTGTCCATTC					PREDICTED: Rattus norvegicus similar to Magea8 (LOC503439), mRNA.					
Rattus norvegicus	RefSeq	GI_62662262-S	ILMN_58960	LOC364519	XM_573869.1	XM_573869.1		364519	62662262	XM_573869.1	LOC364519	XP_573869.1	ILMN_1349271	0004560551	S	951	GAGATGGAGGCAACACACTATGGACACCAGAGAGGCTCCATGCCCCCTAC				16p15	PREDICTED: Rattus norvegicus similar to 54 kDa nuclear RNA- and DNA-binding protein (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (Non-POU domain-containing octamer-binding protein) (DNA-binding P52/P100 complex, 52 kDa subunit) (LOC364519), mRNA.					
Rattus norvegicus	RefSeq	GI_47059005-S	ILMN_285160	RPL18A	NM_212510.1	NM_212510.1		290641	47059005	NM_212510.1	Rpl18a	NP_997675.1	ILMN_1370927	0001340746	S	4	GGCCTTTTGTGAGTGGCAGTGAACGAGCACGCACTGCTATGAAGGCGTCG	16	+	19042066-19042098:19042099-19042115	16p14	Rattus norvegicus ribosomal protein L18A (Rpl18a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rpl18a	Rpl18a
Rattus norvegicus	RefSeq	GI_62717815-S	ILMN_49684	LOC501231	XM_576652.2	XM_576652.2		501231	109512873	XM_576652.2	LOC501231	XP_576652.1	ILMN_1351436	0000780603	S	1510	TATGAGGAGGGCACGTGGAGAATTGAACGGCAAGCCATGTGCACGAGACA	Un|NW_047840.1	+	172363-172412		PREDICTED: Rattus norvegicus similar to crossveinless 2 CG15671-PA (LOC501231), mRNA.					
Rattus norvegicus	RefSeq	GI_13928771-S	ILMN_283797	OPRL1	NM_031569.1	NM_031569.1		29256	13928771	NM_031569.1	Oprl1	NP_113757.1	ILMN_1369970	0005690154	S	2649	CTTCTGGGGAGGCCAGGGTTCTTCCTTTGACACTTGTGCGGGAGCCGTTA	3	+	170874858-170874907	3q43	Rattus norvegicus opioid receptor-like 1 (Oprl1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 15051] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 15051] [evidence IEA]	Oprl; MOR-C; KOR-3; KOR3; ORL1; OFQR; LC132; XOR1	Oprl; MOR-C; KOR-3; KOR3; ORL1; OFQR; LC132; XOR1
Rattus norvegicus	RefSeq	GI_13162342-S	ILMN_290863	ARF4	NM_024151.1	NM_024151.1		79120	13162342	NM_024151.1	Arf4	NP_077065.1	ILMN_1358093	0002470427	S	1103	CCCCCTTGGAACTCACTGATACCTATCATTCCTCGGGCAGTCTGCTGAGT	16	+	1971821-1971870	16p16	Rattus norvegicus ADP-ribosylation factor 4 (Arf4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IDA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652184-S	ILMN_264757	DYRK2_PREDICTED	XM_001081013.1	XM_001081013.1		314862	109482007	XM_001081013.1	Dyrk2_predicted	XP_001081013.1	ILMN_1360549	0005050114	S	1837	GCTCCAGTCCCCTGATGCTGGCAATCTGAAAACCGCGTTATAGCTGAGCC				7q22	PREDICTED: Rattus norvegicus dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 (predicted) (Dyrk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654503-S	ILMN_60355	RGD1565726_PREDICTED	XM_343506.3	XM_343506.3		363167	109484107	XM_343506.3	RGD1565726_predicted	XP_343507.3	ILMN_1355658	0003840494	S	3152	CCATGCAGAGTGTGATTGCTCTACTCAACAACCTGGTGGCCTACAAAGAC	8	-	126130290-126130339	8q32	PREDICTED: Rattus norvegicus similar to hypothetical protein A730098P15 (predicted) (RGD1565726_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078738-S	ILMN_276493	TCTA	NM_001014005.1	NM_001014005.1		306587	62078738	NM_001014005.1	Tcta	NP_001014027.1	ILMN_1364641	0000360609	S	1594	CACAGCCTCATGCCCACCCACTGACATCACTACAAGAGTCAAGGTCTCAC	16|NW_047483.1	-	55805-55854		Rattus norvegicus T-cell leukemia translocation altered gene (Tcta), mRNA.					
Rattus norvegicus	RefSeq	GI_62639100-S	ILMN_269657	OPA3_PREDICTED	XM_001075549.1	XM_001075549.1		308409	109461356	XM_001075549.1	Opa3_predicted	XP_001075549.1	ILMN_1356571	0000730435	S	423	AGCTGGGTGCTGAGCTGCTGGGTGAGGCCACCATCTTCATTGTGGGCGGA				1q21	PREDICTED: Rattus norvegicus optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) (predicted) (Opa3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651363-S	ILMN_59898	LOC299406	XM_234649.2	XM_234649.2		299406	62651363	XM_234649.2	LOC299406	XP_234649.2	ILMN_1359766	0001740138	S	1136	ACTTGCACAAAAACTTCCCTACAATGTCTGGTGTGAGGTGCAGCTGGTGG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC299406), mRNA.					
Rattus norvegicus	RefSeq	GI_62660214-S	ILMN_54655	PPEF2_PREDICTED	XM_223273.4	XM_223273.4		305246	109499532	XM_223273.4	Ppef2_predicted	XP_223273.4	ILMN_1374979	0001410040	S	2214	ACAGTCCACAGACACGGGGGAGAGTGGTCGTAGCAGTCCAGGCCCATGTT	14	+	17392253-17392302	14p22	PREDICTED: Rattus norvegicus protein phosphatase, EF hand calcium-binding domain 2 (predicted) (Ppef2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653008-S	ILMN_52209	ASB8_PREDICTED	XM_235618.4	XM_235618.4		315287	109481242	XM_235618.4	Asb8_predicted	XP_235618.2	ILMN_1351695	0002650500	S	1769	GCTAGGGACAGAACACAGAATACAAAAGGGGTTCTTTGGAACTGGCCGCC	7	-	136848496-136848545	7q36	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing protein 8 (predicted) (Asb8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639363-S	ILMN_51420	ETSRP71_PREDICTED	XM_341830.3	XM_341830.3		361544	109458529	XM_341830.3	Etsrp71_predicted	XP_341831.3	ILMN_1358496	0003440717	S	1003	CGGCTGTGGGGCGAGCGCAAGAGGAAGCCGGGAATGAATTATGAGAAGCT	1	-	85684858-85684907	1q21	PREDICTED: Rattus norvegicus ets related protein 71 (predicted) (Etsrp71_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648354-S	ILMN_64717	LOC502872	XM_578373.1	XM_578373.1		502872	62648354	XM_578373.1	LOC502872	XP_578373.1	ILMN_1353468	0002260398	S	143	GGGAAGCAACATCAGTGGTCCTCAAGCTGTCGCACTCCAGCCAGTTGTCG				4q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830427H10 (LOC502872), mRNA.					
Rattus norvegicus	RefSeq	GI_62664446-S	ILMN_51670	MOSPD4_PREDICTED	XM_228394.3	XM_228394.3		317161	109506570	XM_228394.3	Mospd4_predicted	XP_228394.3	ILMN_1351693	0005890368	S	489	GAAGGGTTATACCACGCCTCTTCCTGTTGTTCTGCTGGTGATCGGAGCAG	18	-	40672066-40672115	18q11	PREDICTED: Rattus norvegicus motile sperm domain containing 4 (predicted) (Mospd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650574-S	ILMN_66508	LOC314030	XM_234042.3	XM_234042.3		314030	62650574	XM_234042.3	LOC314030	XP_234042.3	ILMN_1349438	0004280152	S	663	GAGTCCAAACTACCAAGTCATCCAGCTTTCTGCCGAGCTGTTCCAGACAG					PREDICTED: Rattus norvegicus similar to component of oligomeric golgi complex 5 isoform 1 (LOC314030), mRNA.					
Rattus norvegicus	RefSeq	GI_27674584-S	ILMN_69885	RGD1562510_PREDICTED	XM_223924.2	XM_223924.2		289989	109501512	XM_223924.2	RGD1562510_predicted	XP_223924.1	ILMN_1371201	0003120750	S	174	CCCTACACTTCTGATTCCCAAGCTCCCCTTTCAGCAAGAAATGGCTCAGG	15	-	21126661-21126710	15p14	PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (predicted) (RGD1562510_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742719-S	ILMN_278501	DUSP13	NM_001007006.1	NM_001007006.1		361002	55742719	NM_001007006.1	Dusp13	NP_001007007.1	ILMN_1367815	0002100577	S	992	GGCTGAGGCGGGAAACAGGGAGACTCTGAATTAGGGAGCACTTGAAGCCC	15	+	2629949-2629977:2629978-2629998	15p16	Rattus norvegicus dual specificity phosphatase 13 (Dusp13), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence ISS]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]	MGC94474	MGC94474
Rattus norvegicus	RefSeq	GI_6981203-S	ILMN_282098	MGP	NM_012862.1	NM_012862.1		25333	6981203	NM_012862.1	Mgp	NP_036994.1	ILMN_1351917	0002630142	S	294	CTACTTCAGGCAGCGCCGAGGAGCCAAATAAGAGCGCAAGGAAACAGTCG	4	-	173910775-173910792:173910793-173910824	4q43	Rattus norvegicus matrix Gla protein (Mgp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IPI]	Mglap	Mglap
Rattus norvegicus	RefSeq	GI_62648972-S	ILMN_283942	RGD1563359_PREDICTED	XM_001056122.1	XM_001056122.1		313228	109476489	XM_001056122.1	RGD1563359_predicted	XP_001056122.1	ILMN_1366335	0006860138	S	3116	CATCAAAGAGTCCATCCAAAGGCATGTCGGCCGCAAAGTCCGCCAGGCAC				5q22	PREDICTED: Rattus norvegicus similar to Inv protein - mouse (predicted) (RGD1563359_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660020-S	ILMN_279347	RGD1304688_PREDICTED	XM_001060365.1	XM_001060365.1		305625	109500221	XM_001060365.1	RGD1304688_predicted	XP_001060365.1	ILMN_1352744	0002940273	S	1726	GGAAGCTCCTGGGCCTGCTTCTGTCTCCAAAGGACACTCAGAATGGACAG				14p22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732482E20 (predicted) (RGD1304688_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651070-S	ILMN_288923	MLH3_PREDICTED	XM_001060119.1	XM_001060119.1		314320	109479679	XM_001060119.1	Mlh3_predicted	XP_001060119.1	ILMN_1360382	0001410129	S	4234	GTGATACAAAGCAGGAGCCACAACAGCCCGTACCTCCTTGTGAGCCACCG				6q31	PREDICTED: Rattus norvegicus mutL homolog 3 (E. coli) (predicted), transcript variant 2 (Mlh3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661656-S	ILMN_285285	DPYSL2	XM_001067745.1	XM_001067745.1		25416	109502633	XM_001067745.1	Dpysl2	XP_001067745.1	ILMN_1355161	0007050577	S	304	TGGAGATCCGGCGGGCCTCGGGCAAGGAAGCTCTGCAGAACATCTACGAT				15p12	PREDICTED: Rattus norvegicus dihydropyrimidinase-like 2 (Dpysl2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the rate, direction or extent of axon extension [goid 30516] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649923-S	ILMN_54445	RGD1311709_PREDICTED	XM_216567.4	XM_216567.4		298586	109475723	XM_216567.4	RGD1311709_predicted	XP_216567.3	ILMN_1368982	0000580736	S	924	AAGGCCTTCCAGCAAGTACTTCATCTCCACTGGACGCCCCCAGGACTGCT	5	-	158149277-158149326	5q36	PREDICTED: Rattus norvegicus similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like (predicted) (RGD1311709_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661487-S	ILMN_263203	IPO4_PREDICTED	XM_001056047.1	XM_001056047.1		290228	109502413	XM_001056047.1	Ipo4_predicted	XP_001056047.1	ILMN_1372442	0003190131	S	3202	GCCCTGGGCTCTCTGCCAGATGATAAAGCTCGGGAACTTCAGGCCATGCT				15p13	PREDICTED: Rattus norvegicus importin 4 (predicted) (Ipo4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662213-S	ILMN_56334	RGD1564899_PREDICTED	XM_573855.2	XM_573855.2		498579	109503062	XM_573855.2	RGD1564899_predicted	XP_573855.2	ILMN_1364211	0006420403	S	4175	CCCTTAGTCCCGAGGAAGAGGGTGCGGAAGCCCCAAGCCTAAGTATCATC	16	-	8168497-8168546	16p16	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 71 (predicted) (RGD1564899_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665979-S	ILMN_293249	LOC606294	NM_001031627.1	NM_001031627.1		606294	72384368	NM_001031627.1	LOC606294	NP_001026797.1	ILMN_1359392	0006110451	S	2202	CGACGCTGCGTAGTGTACCTGGTAGAAGAACCTGTCACTGTGGTGAACTT	20	-	29817425-29817474	20q11	Rattus norvegicus hypothetical protein LOC606294 (LOC606294), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence ISS]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_53850649-S	ILMN_265154	CREB3L1	NM_001005562.1	NM_001005562.1		362165	53850649	NM_001005562.1	Creb3l1	NP_001005562.1	ILMN_1357483	0006380458	S	2462	ATTTTATGAAGTTAGTGCGGGCTTTGCTACCCCTTGGCCTGGGACAGAGG	3	-	76361279-76361328	3q24	Rattus norvegicus cAMP responsive element binding protein 3-like 1 (Creb3l1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Oasis; MGC94038	Oasis; MGC94038
Rattus norvegicus	RefSeq	GI_13929207-S	ILMN_270530	SCD	NM_031841.1	NM_031841.1		83792	13929207	NM_031841.1	Scd	NP_114029.1	ILMN_1359586	0002190458	S	4576	CGTGAATCATGGGACAGACTCAAACCGTAGCACTGGGCATGTCGCCTAAC	1	+	249370694-249370743	1q54	Rattus norvegicus stearoyl-CoA desaturase (delta-9-desaturase) (Scd), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence TAS]; Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence IDA]; Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664136-S	ILMN_65456	RGD1564140_PREDICTED	XM_574113.2	XM_574113.2		498832	109506382	XM_574113.2	RGD1564140_predicted	XP_574113.2	ILMN_1350455	0004480021	S	675	AAAGGAACGCCTTCAGCAACTCCTGGCCCAACAAGAGACAAAGCTTCTCC	18	+	17205785-17205834	18p12	PREDICTED: Rattus norvegicus similar to AW554918 protein (predicted) (RGD1564140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19923673-S	ILMN_282891	PAM	NM_013000.2	NM_013000.2		25508	19923673	NM_013000.2	Pam	NP_037132.2	ILMN_1364939	0004590373	S	3531	GGCAGTGAAGAGAACCAACCTGCCACACGACGAAAAGCTGCTAAATCTCC	9	+	97047308-97047357	9q36	Rattus norvegicus peptidylglycine alpha-amidating monooxygenase (Pam), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence ISS]; The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 6518] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: peptidyl-glycine + ascorbate + O2 = peptidyl(2-hydroxyglycine) + dehydroascorbate + H2O [goid 4504] [evidence IEA]; Catalysis of the reaction: peptidylamidoglycolate = peptidyl amide + glyoxylate [goid 4598] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9837933] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742622-A	ILMN_268346	UGCG	NM_031795.1	NM_031795.1		83626	25742622	NM_031795.1	Ugcg	NP_113983.1	ILMN_1376594	0003870520	S	2417	TGCTGAGTGCGTTTGTCGGTTTGTTTAGTGGCGTTTGGTGGAAGCCCTTC	5	+	77295329-77295378	5q24	Rattus norvegicus UDP-glucose ceramide glucosyltransferase (Ugcg), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: UDP-glucose + N-acylsphingosine = UDP + D-glucosyl-N-acylsphingosine [goid 8120] [evidence IDA]; Catalysis of the reaction: UDP-glucose + N-acylsphingosine = UDP + D-glucosyl-N-acylsphingosine [goid 8120] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605655-S	ILMN_278284	DONSON	NM_001008287.1	NM_001008287.1		288257	56605655	NM_001008287.1	Donson	NP_001008288.1	ILMN_1354888	0002680347	S	2062	GTCCAAGGGCAGGGTACTTTGTACTTCATCTCAATGTTGGGTGCTCGGTC	11	-	31652321-31652370	11q11	Rattus norvegicus downstream neighbor of SON (Donson), mRNA.				MGC94546	MGC94546
Rattus norvegicus	RefSeq	GI_62654373-S	ILMN_277845	RGD1562523_PREDICTED	XM_576477.1	XM_576477.1		501061	62654373	XM_576477.1	RGD1562523_predicted	XP_576477.1	ILMN_1357762	0002850706	S	288	GCGAAAAGCAGCCAAGATGTACACAGACAAGCTGGAGACCGTGCCTCCCC	8	-	115255960-115256009	8q32	PREDICTED: Rattus norvegicus similar to putative integral membrane protein TMIE (predicted) (RGD1562523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667011-S	ILMN_61473	RGD1562672_PREDICTED	XM_228590.4	XM_228590.4		317268	109510819	XM_228590.4	RGD1562672_predicted	XP_228590.4	ILMN_1364694	0003940397	S	1958	CTGAGGCTCAAGGCTAAGGAGCACGCCGCGCAGCTCACGCAGCTCAACAT	X	+	80642949-80642998	Xq22	PREDICTED: Rattus norvegicus similar to Arx homeoprotein (predicted) (RGD1562672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485392-S	ILMN_289850	TLR6	NM_207604.1	NM_207604.1		305353	46485392	NM_207604.1	Tlr6	NP_997487.1	ILMN_1356202	0001690592	S	2528	GAGGGCTCTCATGGCACAGCGGACTTACTTGGAATGGCCTATTGAGAAGG	14	+	46100515-46100564	14p11	Rattus norvegicus toll-like receptor 6 (Tlr6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence IDA]; The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2282] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipoprotein stimulus [goid 32493] [evidence IDA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA];  [goid 52033] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence IDA]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27690703-S	ILMN_57015	RGD1559517_PREDICTED	XM_227127.2	XM_227127.2		295010	109464830	XM_227127.2	RGD1559517_predicted	XP_227127.1	ILMN_1364450	0004610333	S	1047	GGCTGAGATGAATGGCCGCATCCTGGGCTCCAAACCCCTCAACATTGCAC	2	-	134158742-134158791	2q26	PREDICTED: Rattus norvegicus similar to MGC80927 protein (predicted) (RGD1559517_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658075-S	ILMN_287668	RGD1559972_PREDICTED	XM_001057888.1	XM_001057888.1		363817	109494640	XM_001057888.1	RGD1559972_predicted	XP_001057888.1	ILMN_1361272	0006520594	S	182	ACTTCGTTAAAGTTGGCATGAGGCAGTGCCACTTGAAGAGGAACCAGAGC				11q23	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (predicted) (RGD1559972_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666940-S	ILMN_57168	LOC501583	XM_580213.1	XM_580213.1		501583	62666940	XM_580213.1	LOC501583	XP_580213.1	ILMN_1367057	0006420184	S	365	GCCTCCTCAGCAAGCCACCAAAGACTAGAAATCCATTCACAGGTCTGGCG				Xq31	PREDICTED: Rattus norvegicus LOC501583 (LOC501583), mRNA.					
Rattus norvegicus	RefSeq	GI_62654300-S	ILMN_50283	RGD1307220_PREDICTED	XM_236595.4	XM_236595.4		315980	109483919	XM_236595.4	RGD1307220_predicted	XP_236595.4	ILMN_1369629	0001400435	S	5055	TTGCCAGAGCTGCGGGAAAGCCAGTGAGTGTCTCGCCGTTGTTTGGTTTT	8	+	111206426-111206475	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E330026B02 (predicted) (RGD1307220_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855490-S	ILMN_59432	LOC294942	XM_215541.2	XM_215541.2		294942	34855490	XM_215541.2	LOC294942	XP_215541.2	ILMN_1364744	0006520500	S	3365	TACATAGTCCACTTACACCTGCACTGAAAGGACTCTGCAAAGTGGCAACA					PREDICTED: Rattus norvegicus hypothetical LOC294942 (LOC294942), mRNA.					
Rattus norvegicus	RefSeq	GI_62658891-S	ILMN_53672	LOC288664	XM_222183.3	XM_222183.3		288664	62658891	XM_222183.3	LOC288664	XP_222183.2	ILMN_1359802	0005860605	S	836	AGGTGACCAGTGAGCCTCCAAGCGGGGCCTACTTCCCACTCACCACAGTG				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32356 (predicted) (LOC288664), mRNA.					
Rattus norvegicus	RefSeq	GI_62649563-S	ILMN_58585	SCMH1_PREDICTED	XM_342900.3	XM_342900.3		362581	109475423	XM_342900.3	Scmh1_predicted	XP_342901.2	ILMN_1372322	0002060619	S	2536	ACACTGGGTCCTCTGTAGCCCCAGCCTTCATCTCTGATGGAGTTTTCCCC	5	+	141127283-141127332	5q36	PREDICTED: Rattus norvegicus sex comb on midleg homolog 1 (predicted) (Scmh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653430-S	ILMN_52720	LOC497830	XM_579744.1	XM_579744.1		497830	62653430	XM_579744.1	LOC497830	XP_579744.1	ILMN_1373601	0002230687	S	3780	GCTAACGTGGCAGTTTCTTTGATGCAGTTACATGGCAAAACCCTGTCGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_213629 (LOC497830), mRNA.					
Rattus norvegicus	RefSeq	GI_31795568-S	ILMN_287460	COL23A1	NM_181636.2	NM_181636.2		353303	31795568	NM_181636.2	Col23a1	NP_853667.1	ILMN_1354826	0006370446	S	2307	ACCTTGGGAAATGGCAAGACTCTGTGGATACCTCACTGGCAGGCAGCCCA	10	+	37096136-37096185	10q22	Rattus norvegicus collagen, type XXIII, alpha 1 (Col23a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62665441-S	ILMN_48902	LOC292088	XM_238058.2	XM_238058.2		292088	62665441	XM_238058.2	LOC292088	XP_238058.1	ILMN_1360727	0004070471	S	200	GTCCATGTGGGCATCCACTCCAGCAAGTAGGAAGGGAGAAGGGCAAATAC				19q12	PREDICTED: Rattus norvegicus hypothetical LOC292088 (LOC292088), mRNA.					
Rattus norvegicus	RefSeq	GI_62643913-I	ILMN_48613	SF3B4_PREDICTED	XM_574996.1	XM_574996.1		295270	62643913	XM_574996.1	Sf3b4_predicted	XP_574996.1	ILMN_1375968	0006450687	S	1597	CGGACCAATCAGAGATGCTGTAGCTCGTCAGGGCTAATGTGCTGACCCCT				2q34	PREDICTED: Rattus norvegicus splicing factor 3b, subunit 4 (predicted) (Sf3b4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648622-S	ILMN_55454	LOC500406	XM_575769.1	XM_575769.1		500406	62648622	XM_575769.1	LOC500406	XP_575769.1	ILMN_1349329	0005910053	S	983	CACCCCAGAGGAGTAACTGGCAGAAAATAATCAAACTTGGAGCTGAAATC					PREDICTED: Rattus norvegicus similar to LRRGT00174 (LOC500406), mRNA.					
Rattus norvegicus	RefSeq	GI_62664528-S	ILMN_272325	NARS	NM_001025635.1	NM_001025635.1		291556	71043733	NM_001025635.1	Nars	NP_001020806.1	ILMN_1374544	0003360138	S	2317	TAGCCACCGTAGACAGCTAAGTCATCCCTGCCTTTTCCGTGGGTGCCGTC	18	-	60719528-60719577	18q12.1	Rattus norvegicus asparaginyl-tRNA synthetase (Nars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6421] [evidence IEA]; The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6422] [evidence IEA]; The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6421] [evidence IEA]; The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6422] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp) [goid 4815] [evidence IEA]; Catalysis of the reaction: ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn) [goid 4816] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp) [goid 4815] [evidence IEA]; Catalysis of the reaction: ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn) [goid 4816] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	LRRGT00113; MGC116236	LRRGT00113; MGC116236
Rattus norvegicus	RefSeq	GI_62640813-S	ILMN_262775	TM6SF1_PREDICTED	XM_001067588.1	XM_001067588.1		361600	109462242	XM_001067588.1	Tm6sf1_predicted	XP_001067588.1	ILMN_1371959	0000520717	S	1349	GGAGGTCTAGCTCAGGCTCAGTTTTCTCACATCGGTGCGTCCCTTCATGC				1q31	PREDICTED: Rattus norvegicus transmembrane 6 superfamily member 1 (predicted) (Tm6sf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923987-S	ILMN_263841	PFKFB3	NM_057135.1	NM_057135.1		117276	16923987	NM_057135.1	Pfkfb3	NP_476476.1	ILMN_1370816	0006380075	S	1777	GTCAGACCTTCCTCTTACACCGAACTTGACTTTCTGTCTGTGGAGTCCGC	17	+	78261299-78261348	17q12.3	Rattus norvegicus 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (Pfkfb3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process that modulates the frequency, rate or extent of glycolysis [goid 6110] [evidence TAS]; The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence ISS]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence IEA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758387-S	ILMN_279938	ATP5J	NM_053602.1	NM_053602.1		94271	16758387	NM_053602.1	Atp5j	NP_446054.1	ILMN_1355210	0004210484	S	127	GCTCGGGACTCAGTGCAAGTACCACAGACTCAACCATGACTGTTCAGAGG	11	-	24320147-24320162:24320163-24320178:24323656-24323673	11q11	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 (Atp5j), nuclear gene encoding mitochondrial protein, mRNA.	All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins [goid 276] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62719326-S	ILMN_269742	PPP4C	NM_134359.1	NM_134359.1		171366	62719326	NM_134359.1	Ppp4c	NP_599186.1	ILMN_1359895	0002360204	S	1037	TTCGAGGCTGCACCCCAAGAGACACGTGGCATCCCCTCCAAAAAGCCAGT	1	-	185961618-185961667	1q36	Rattus norvegicus protein phosphatase 4, catalytic subunit (Ppp4c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]		Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ppx; MGC94490	Ppx; MGC94490
Rattus norvegicus	RefSeq	GI_62643658-S	ILMN_276973	RGD1562064_PREDICTED	XM_001067275.1	XM_001067275.1		295117	109466806	XM_001067275.1	RGD1562064_predicted	XP_001067275.1	ILMN_1356738	0000770164	S	1338	GTGGCTGGAGGTATCAAAGGACTGGAATGGACTGTATGTCGGCCCGGAGG				2q32	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC48915 (predicted) (RGD1562064_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34863289-S	ILMN_293772	RGD1310980_PREDICTED	XM_001067938.1	XM_001067938.1		363054	109484617	XM_001067938.1	RGD1310980_predicted	XP_001067938.1	ILMN_1361676	0006290278	S	640	GTTTCCGATGACACTGACCAGGAGGACAGCAACGACTGTATGTCCAGGCT				8q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A530065I17 gene (predicted) (RGD1310980_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665122-S	ILMN_281357	TTC29	NM_001013890.1	NM_001013890.1		291944	62078514	NM_001013890.1	Ttc29	NP_001013912.1	ILMN_2039033	0006060707	S	988	GGAAGGAGAGGCTTCTTACTACCTGGGCTTGGCCCACTTGGCTTCTGGAG	19	-	31576449-31576498	19q11	Rattus norvegicus tetratricopeptide repeat domain 29 (Ttc29), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948421-S	ILMN_277207	RGD1303003	NM_001004225.1	NM_001004225.1		294326	51948421	NM_001004225.1	RGD1303003	NP_001004225.1	ILMN_1365363	0000940176	S	1049	CCATTGGGTGGTCTGGGCACCTTTTCCAGAGCCTGGTTCAAGGACTCACG	20	+	10859424-10859473	20p12	Rattus norvegicus homolog of zebrafish ES1 (RGD1303003), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]			C21orf33; MGC94888; ES1	C21orf33; MGC94888; ES1
Rattus norvegicus	RefSeq	GI_62661658-S	ILMN_285764	EBF2_PREDICTED	XM_001068246.1	XM_001068246.1		361060	109502639	XM_001068246.1	Ebf2_predicted	XP_001068246.1	ILMN_1366312	0006130128	S	3616	CTCCTACTGGGAGATTTGTGGCAGCTGTGTTCCAAGCCTGCCCCGGGAGC				15p12	PREDICTED: Rattus norvegicus early B-cell factor 2 (predicted) (Ebf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642875-S	ILMN_65404	ADAMTS6_PREDICTED	XM_342184.3	XM_342184.3		361886	109464337	XM_342184.3	Adamts6_predicted	XP_342185.2	ILMN_1358450	0006520095	S	3152	AGGCATCTGTTGACTGCCCAGAAGCTGTTCGGCCTCCATCCATGCAGCAG	2	+	35421913-35421962	2q13	PREDICTED: Rattus norvegicus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 (predicted) (Adamts6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665468-S	ILMN_50224	LOC502202	XM_580241.1	XM_580241.1		502202	62665468	XM_580241.1	LOC502202	XP_580241.1	ILMN_1356644	0007040132	S	134	CCGGATGGTGAAATGCGACCTTTACTGTGACAAACACCTGGCCTACTGCC					PREDICTED: Rattus norvegicus LOC502202 (LOC502202), mRNA.					
Rattus norvegicus	RefSeq	GI_62664878-S	ILMN_268064	RGD1562170_PREDICTED	XM_001064101.1	XM_001064101.1		498913	109508443	XM_001064101.1	RGD1562170_predicted	XP_001064101.1	ILMN_1365872	0001990446	S	125	TTCCGAGCAACGGGAACCATGACTCAGCGAAAACAGACCTCGGGACCGTG					PREDICTED: Rattus norvegicus RGD1562170 (predicted) (RGD1562170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655622-S	ILMN_278031	RGD1565890_PREDICTED	XM_001078053.1	XM_001078053.1		363536	109489650	XM_001078053.1	RGD1565890_predicted	XP_001078053.1	ILMN_1353419	0007050487	S	1705	TACAGGAACCCATTAGGAAGGGGACACACGGGCCACAAGGAGTCGCCAGA				10q11	PREDICTED: Rattus norvegicus similar to RUN domain containing 2A (predicted) (RGD1565890_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657036-S	ILMN_61716	LOC497997	XM_579766.1	XM_579766.1		497997	62657036	XM_579766.1	LOC497997	XP_579766.1	ILMN_1366968	0003060594	S	488	CCACCCAGAACCTCCACCTCTAACAACATGGTCAGCTCCTGTTGTGGCTC					PREDICTED: Rattus norvegicus LOC497997 (LOC497997), mRNA.					
Rattus norvegicus	RefSeq	GI_62664690-S	ILMN_284820	KCNG2	XM_225718.3	XM_225718.3		307234	62664690	XM_225718.3	Kcng2	XP_225718.3	ILMN_1353916	0002510673	S	523	GAGGAAAGGGGCGAGTGCTCCACCAAGTGCCGCAACCTCTTCGTGTTGGA	18	-	77191026-77191067:77217412-77217419	18q12.3	PREDICTED: Rattus norvegicus potassium voltage-gated channel, subfamily G, member 2 (Kcng2), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663851-S	ILMN_49727	LOC307049	XM_225467.2	XM_225467.2		307049	62663851	XM_225467.2	LOC307049	XP_225467.2	ILMN_1359342	0002760592	S	12	GCATGGGTTCCTATGCATGGGCCTATGGGTGATGTCATCGTCATCATTGG				17q12.1	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (LOC307049), mRNA.					
Rattus norvegicus	RefSeq	GI_62641150-S	ILMN_49175	GALNTL4_PREDICTED	XM_215017.4	XM_215017.4		293181	109459233	XM_215017.4	Galntl4_predicted	XP_215017.4	ILMN_1362732	0005700044	S	2220	GCTGGTGCTGCAGAAGTGCTCGGGACAACACTGGACTATCACCAATGTCC	1	-	169251818-169251867	1q33	PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 (predicted) (Galntl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27710417-S	ILMN_161797	LOC288762	XM_213822.1	XM_213822.1			27710417	XM_213822.1	LOC288762		ILMN_2039237	0000580681	S	353	ACCCCATGGAGCAGCGATATAATGAGCTCCTGGCCCTGCGTGACGATTAC										
Rattus norvegicus	RefSeq	GI_34874174-S	ILMN_265588	RGD1308396_PREDICTED	XM_001061204.1	XM_001061204.1		290235	109502439	XM_001061204.1	RGD1308396_predicted	XP_001061204.1	ILMN_1351358	0001240736	S	1790	CAGCTTTGGGGGCTCGGAAGGAGATTGCTGCTGAACTGGGAGAGCAGAAC				15p13	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 21 (predicted) (RGD1308396_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15559212-S	ILMN_282999	RHO	NM_033441.1	NM_033441.1		24717	15559212	NM_033441.1	Rho	NP_254276.1	ILMN_2039314	0006550121	S	1276	AGCAAAATGAGGCTCCCCACTCAACAGGGACAGCCTGACAAAGGACATCC	4	+	152062733-152062782	4q42	Rattus norvegicus rhodopsin (Rho), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm [goid 7603] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]; The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal [goid 9583] [evidence ISS]; The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events then required to return the rhodopsin containing cell to the unexcited state [goid 9586] [evidence IDA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50953] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation [goid 9881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652104-S	ILMN_52295	LOC366890	XM_345821.2	XM_345821.2		366890	62652104	XM_345821.2	LOC366890	XP_345822.2	ILMN_1373544	0004810168	S	980	GAGAGGAAGAGACACAGGAAGAAGATAACCCAATAGAAGCCAAACCCCCG				7q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921508O11 (predicted) (LOC366890), mRNA.					
Rattus norvegicus	RefSeq	GI_62646164-S	ILMN_48618	LOC311760	XM_231010.3	XM_231010.3		311760	62646164	XM_231010.3	LOC311760	XP_231010.3	ILMN_1353914	0000510301	S	1330	AAGCCTTGGCTACCTGCTGTCTCACTGGCCGGATGCTGCTCTCAGATGCC				3q36	PREDICTED: Rattus norvegicus similar to C20orf82 (LOC311760), mRNA.					
Rattus norvegicus	RefSeq	GI_10864070-S	ILMN_281954	MPP4	NM_021265.1	NM_021265.1		58808	10864070	NM_021265.1	Mpp4	NP_067088.1	ILMN_1372722	0003060368	S	1882	CTTATAGGGAGCTACTCGTTTGGCTCTCAGGCATTTCCCCGCTGTTTCCC	9	-	57697079-57697128	9q31	Rattus norvegicus membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) (Mpp4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [pmid 10558890] [evidence IPI]	Dlg6	Dlg6
Rattus norvegicus	RefSeq	GI_62664783	ILMN_61554	LOC361358	XM_341638.2	XM_341638.2		361358	62664783	XM_341638.2	LOC361358	XP_341639.2	ILMN_1650554	0001090072	S	1178	TGGGGTTAGCTCAGACACCCACCCTAAGTTTCAGGGGGAGACAGGCCCTT				19p14	PREDICTED: Rattus norvegicus similar to Nedd4-binding brain specific protein BEAN (LOC361358), mRNA.					
Rattus norvegicus	RefSeq	GI_62665171-S	ILMN_294321	ACD	NM_001037193.1	NM_001037193.1		307798	81295352	NM_001037193.1	Acd	NP_001032270.1	ILMN_1367485	0003170377	S	530	CCTGTCTCAGCTTCTGGATGAGGTGAAGGAAGACGGGGATCATCGGGGAG	19	-	35531877-35531926	19q12	Rattus norvegicus adrenocortical dysplasia homolog (mouse) (Acd), mRNA.	The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; A complex of DNA and protein located at the end of a linear chromosome in the nucleus that protects and stabilizes a linear chromosome [goid 783] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure [goid 1655] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis [goid 35282] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC116400	MGC116400
Rattus norvegicus	RefSeq	GI_12621085-S	ILMN_267553	KCNIP1	NM_022929.1	NM_022929.1		65023	12621085	NM_022929.1	Kcnip1	NP_075218.1	ILMN_1349917	0004050064	S	477	GAAATACACATATCCCGTGCTCAAAGAGGACACTCCCAGGCAGCACGTGG	10	-	18552208-18552253:18553578-18553581	10q12	Rattus norvegicus Kv channel-interacting protein 1 (Kcnip1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 45760] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA];  [goid 15459] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 14980206] [evidence IPI]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kchip1	Kchip1
Rattus norvegicus	RefSeq	GI_62662321	ILMN_301037	RGD1565349_PREDICTED	XR_008123.1	XR_008123.1		502055	109503831	XR_008123.1	RGD1565349_predicted		ILMN_1651069	0000610487	S	177	GGACCTGAGCAAGCCTTATAGAGACTCCAACATTAGTACAGAGGCTGTGG				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1565349_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654460-S	ILMN_292298	AZI2	NM_001025705.1	NM_001025705.1		316051	71043623	NM_001025705.1	Azi2	NP_001020876.1	ILMN_1356961	0006220041	S	1586	CTTGGGCTTTGATCGGGACACTAACTCACTGGTTCTCTCAGACCGACAGT	8	+	122985190-122985239	8q32	Rattus norvegicus 5-azacytidine induced 2 (Azi2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence IEA]		MGC112644	MGC112644
Rattus norvegicus	RefSeq	GI_62658393-S	ILMN_70138	LOC288455	XM_213700.3	XM_213700.3		288455	62658393	XM_213700.3	LOC288455	XP_213700.1	ILMN_1356085	0002690037	S	567	ACTGAGAGGATCGCTGGGTCATGTGGATGTGTTTGGGGCGTGGTTTGGGG				12p11	PREDICTED: Rattus norvegicus similar to chromosome 13 open reading frame 12 (predicted) (LOC288455), mRNA.					
Rattus norvegicus	RefSeq	GI_62646258-S	ILMN_268287	RGD1565583_PREDICTED	XM_001068199.1	XM_001068199.1		311598	109471227	XM_001068199.1	RGD1565583_predicted	XP_001068199.1	ILMN_1373469	0003800136	S	1603	TAAAGAGCGGCAGGTCCACTTCACTGGCATCAGGTCCCGGCTCACCCAGA				3q42	PREDICTED: Rattus norvegicus similar to Protein C20orf129 homolog (predicted) (RGD1565583_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865336-S	ILMN_262439	TNNT3	NM_031532.1	NM_031532.1		24838	58865336	NM_031532.1	Tnnt3	NP_113720.1	ILMN_1356760	0000610427	S	675	TACCACCCTCAGGAGCCGCATTGACCAAGCCCAGAAGCACAGCAAGAAGG	1	+	202760450-202760488:202761911-202761921	1q41	Rattus norvegicus troponin T type 3 (skeletal, fast) (Tnnt3), mRNA.	A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence TAS]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IDA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]	A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IDA]; Any process that modulates the frequency, rate or extent of striated muscle contraction [goid 6942] [evidence IMP]; Any process that modulates the frequency, rate or extent of striated muscle contraction [goid 6942] [evidence ISS]; Any process that modulates the rate of ATP hydrolysis by an ATPase [goid 43462] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence ISS]; Interacting selectively with troponin C, the calcium-binding subunit of the troponin complex [goid 30172] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of calcium ion (Ca2+) [goid 30899] [evidence ISS]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence ISS]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]	Tnt	Tnt
Rattus norvegicus	RefSeq	GI_8393433-S	ILMN_288005	GHR	NM_017094.1	NM_017094.1		25235	8393433	NM_017094.1	Ghr	NP_058790.1	ILMN_1370835	0003290601	S	2673	CATCTACGGATGTAACAACTACAATGTGTAGAGGGGTTGATGCTTTGGTC	2	-	52496736-52496785	2q16	Rattus norvegicus growth hormone receptor (Ghr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IMP]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with growth hormone to initiate a change in cell activity [goid 4903] [evidence TAS]; Combining with growth hormone to initiate a change in cell activity [goid 4903] [evidence ISS]; Combining with growth hormone to initiate a change in cell activity [goid 4903] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence ISS]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with any protein phosphatase [goid 19903] [evidence IPI]; Interacting selectively with any protein phosphatase [goid 19903] [evidence IMP]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IPI]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IMP]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]	MGC124963; GHR/BP	MGC124963; GHR/BP
Rattus norvegicus	RefSeq	GI_62646042-S	ILMN_65494	SNPH_PREDICTED	XM_230716.3	XM_230716.3		296267	62646042	XM_230716.3	Snph_predicted	XP_230716.3	ILMN_1373272	0004780537	S	2845	CAGCTATACACCGGCCTGCAGTCAACTCTAACCCAGGACTGCCAAGGCGT				3q41	PREDICTED: Rattus norvegicus syntaphilin (predicted) (Snph_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663752-S	ILMN_66729	LOC498785	XM_574070.1	XM_574070.1		498785	62663752	XM_574070.1	LOC498785	XP_574070.1	ILMN_1365431	0004540446	S	538	CCATGGATGCCTACACTCCCCCAGGTGAGCAACAACCTCAGTATTTCTGC					PREDICTED: Rattus norvegicus similar to novel protein (LOC498785), mRNA.					
Rattus norvegicus	RefSeq	GI_8393970-S	ILMN_272975	PLA2G10	NM_017176.1	NM_017176.1		29359	8393970	NM_017176.1	Pla2g10	NP_058872.1	ILMN_1355559	0005860152	S	576	GCAGGAGTCCCTGGAGGCCAAGTGATGAAGCCTGGGTTTGCTTTCTCCCT	10	-	26296-26345	10q11	Rattus norvegicus phospholipase A2, group X (Pla2g10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	PLA2GX; sPLA2-X	PLA2GX; sPLA2-X
Rattus norvegicus	RefSeq	GI_17105367-S	ILMN_273009	KLF9	NM_057211.1	NM_057211.1		117560	17105367	NM_057211.1	Klf9	NP_476559.1	ILMN_1366897	0001050215	S	2630	GGCATCACATCGCCAACTGTCTGCATCATGGCCCACCACTACTTAGCTTG	1	+	226446331-226446380	1q51	Rattus norvegicus Kruppel-like factor 9 (Klf9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any series of molecular signals generated as a consequence of a progesterone binding to its receptor [goid 50847] [evidence ISS]; Any series of molecular signals generated as a consequence of a progesterone binding to its receptor [goid 50847] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Bteb; Bteb1	Bteb; Bteb1
Rattus norvegicus	RefSeq	Rn.6057	ILMN_280097	BRF1_PREDICTED	XM_001073175.1	XM_001073175.1		299347	109480054	XM_001073175.1	Brf1_predicted	XP_001073175.1	ILMN_1530440	0006550035	S	1751	AGAAGGAGCTTGGCATCTATAAGGAGCACAAGCCCAAGAAGTCTTGCAAA				6q32	PREDICTED: Rattus norvegicus BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) (predicted) (Brf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651304-S	ILMN_280097	BRF1_PREDICTED	XM_001073175.1	XM_001073175.1		299347	109480054	XM_001073175.1	Brf1_predicted	XP_001073175.1	ILMN_1349297	0004070280	S	2124	TGAGCCTGTCAAGCCATCGGCAGTCTTGGTGGAGAGTGGCCCTGTGTCAT				6q32	PREDICTED: Rattus norvegicus BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) (predicted) (Brf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659434-S	ILMN_284323	RGD1560298_PREDICTED	XR_008467.1	XR_008467.1		498244	109498762	XR_008467.1	RGD1560298_predicted		ILMN_1369292	0002570152	S	395	GACCACCTGTCCTACAAGCAGGGGTAAATACAGTCACCACCTTCATAGAG				13q21	PREDICTED: Rattus norvegicus similar to LRRGT00191 (predicted) (RGD1560298_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576186-S	ILMN_281215	OLR1349	NM_001000484.1	NM_001000484.1		301611	47576186	NM_001000484.1	Olr1349	NP_001000484.1	ILMN_1370504	0001450093	S	909	GAAGGATGCCCTGTGGAGGCTGAGACACAGACAGAGACATGCAGCCATGT	9	+	91791058-91791107	9q36	Rattus norvegicus olfactory receptor 1349 (Olr1349), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1349; ratchr9-91994919-91995878_ORF	Olr1349; ratchr9-91994919-91995878_ORF
Rattus norvegicus	RefSeq	GI_62660037	ILMN_66154	RGD1309034_PREDICTED	XM_223142.3	XM_223142.3		305120	62660037	XM_223142.3	RGD1309034_predicted	XP_223142.3	ILMN_1650946	0001410500	S	555	CGTGAACGCCTGGACTTCCTGTGCTGGTGTGCTACAAAGAAACGTGTGAC				14p22	PREDICTED: Rattus norvegicus similar to Expressed sequence AW060207 (predicted) (RGD1309034_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393332-S	ILMN_282469	EDNRB	NM_017333.1	NM_017333.1		50672	8393332	NM_017333.1	Ednrb	NP_059029.1	ILMN_1360909	0004200592	S	1664	CGGAAAACCGTGCTTGCGGAAAGGTGTGCACGCATGGGAGAGGGATTGTT				15q22	Rattus norvegicus endothelin receptor type B (Ednrb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IDA]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the posterior midgut over time, from its formation to the mature structure [goid 7497] [evidence IEA]; The process whose specific outcome is the progression of the posterior midgut over time, from its formation to the mature structure [goid 7497] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; Any process that modulates the rate or extent of fever [goid 31620] [evidence IMP]; A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure [goid 42310] [evidence IMP]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IGI]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The movement of a macrophage in response to an external stimulus [goid 48246] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IMP]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence IGI]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence IMP]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IMP]	A G-protein coupled receptor that binds all endothelin molecules with approximately equal affinity [goid 1600] [evidence TAS]; A G-protein coupled receptor that binds all endothelin molecules with approximately equal affinity [goid 1600] [evidence IDA]; A G-protein coupled receptor that binds all endothelin molecules with approximately equal affinity [goid 1600] [evidence IEA]; A G-protein coupled receptor that binds all endothelin molecules with approximately equal affinity [goid 1600] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with endothelin to initiate a change in cell activity [goid 4962] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IPI]	Etb; Ednra	Etb; Ednra
Rattus norvegicus	RefSeq	GI_62648786-S	ILMN_269246	RGD1563056_PREDICTED	XM_001065262.1	XM_001065262.1		500434	109476317	XM_001065262.1	RGD1563056_predicted	XP_001065262.1	ILMN_1364842	0006350368	S	744	CAATGTGATGGGCAAACTGGTCAATACCCAGGGGGAGCTGCTGTCGGTGG				5q21	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1563056_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644993-S	ILMN_59276	LOC502617	XM_578108.1	XM_578108.1		502617	62644993	XM_578108.1	LOC502617	XP_578108.1	ILMN_1357817	0002650546	S	696	CCTGTTCCTGAGTGCTGTGTGTTTGCAGGTGGCCTGAGGGTGTGTGGATC				3p11	PREDICTED: Rattus norvegicus similar to divalent cation tolerant protein CUTA (LOC502617), mRNA.					
Rattus norvegicus	RefSeq	GI_47576244-S	ILMN_276526	OLR1315	NM_001000469.1	NM_001000469.1		300616	47576244	NM_001000469.1	Olr1315	NP_001000469.1	ILMN_1352704	0006590601	S	787	AGTCCTTGGTTGGATGCAACTGTTCAGATTCTAAACAACCTGGTCACCCC	8	-	42605809-42605858	8q22	Rattus norvegicus olfactory receptor 1315 (Olr1315), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1315	Olr1315
Rattus norvegicus	RefSeq	GI_62650720-S	ILMN_50901	SEC23A_PREDICTED	XM_347236.3	XM_347236.3		58817	109478197	XM_347236.3	Sec23a_predicted	XP_347237.2	ILMN_1361526	0004920592	S	3926	GCTGGGACTAACGGCTGTGCCATGCACTGGGCCTAAATCTTTTGATTGGC	6	-	79659216-79659265	6q23	PREDICTED: Rattus norvegicus SEC23A (S. cerevisiae) (predicted) (Sec23a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664491-S	ILMN_60747	LOC498872	XM_574158.1	XM_574158.1		498872	62664491	XM_574158.1	LOC498872	XP_574158.1	ILMN_1362289	0001450338	S	1538	GGTGATAACTAAAAACTGTCTCCTCACTTTAAGTAAACTCTCAGATCAAT					PREDICTED: Rattus norvegicus similar to MGC108823 protein (LOC498872), mRNA.					
Rattus norvegicus	RefSeq	GI_61557249-S	ILMN_263133	TSSC4	NM_001013194.1	NM_001013194.1		361682	61557249	NM_001013194.1	Tssc4	NP_001013212.1	ILMN_1362551	0006520184	S	1237	TCCAGGTGGGACAGTGTGGGCTCTCTGTAGTAGGGATGTGTGGGCCTCAA	1	+	203346054-203346103	1q41	Rattus norvegicus tumor suppressing subtransferable candidate 4 (Tssc4), mRNA.					
Rattus norvegicus	RefSeq	GI_62659843-A	ILMN_280285	DEGS1	NM_053323.1	NM_053323.1		58970	16758021	NM_053323.1	Degs1	NP_445775.1	ILMN_1376704	0006100050	S	1132	CGGCTCGCTGACGTAATTTCCGGCTAGGATCTCGGTGTCATCAGAAGCTC	13	-	98243219-98243268	13q26	Rattus norvegicus degenerative spermatocyte homolog 1 (Drosophila) (Degs1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor [goid 16705] [evidence IEA]	Degs	Degs
Rattus norvegicus	RefSeq	GI_62821832-S	ILMN_66812	AHSG	NM_012898.4	NM_012898.4		25373	77416365	NM_012898.4	Ahsg	NP_037030.1	ILMN_1352471	0005900162	S	1230	GAATTCAGGTCTCTTCATTCCCCAGAGAAAAGGGGCAGAGAGGTGATGGT	11	-	80330721-80330770	11q23	Rattus norvegicus alpha-2-HS-glycoprotein (Ahsg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEP]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IPI]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IMP]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone mineralization [goid 30502] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of bone mineralization [goid 30502] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence IDA]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence ISS]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]	 [goid 4869] [evidence IEA]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence NAS];  [goid 30294] [evidence IDA];  [goid 4869] [evidence IEA]	Aa2-066; pp63	Aa2-066; pp63
Rattus norvegicus	RefSeq	GI_62665444-S	ILMN_287531	PGBD5_PREDICTED	XM_001054148.1	XM_001054148.1		292098	109509054	XM_001054148.1	Pgbd5_predicted	XP_001054148.1	ILMN_1372800	0002640427	S	2007	TGTTCCATTCTCTGGGGCTGTGACGAGCAGGGTGAGGAGGGGAGACCGAT				19q12	PREDICTED: Rattus norvegicus piggyBac transposable element derived 5 (predicted) (Pgbd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664342-S	ILMN_286420	RGD1563060_PREDICTED	XM_214562.2	XM_214562.2		291608	62664342	XM_214562.2	RGD1563060_predicted	XP_214562.1	ILMN_1374758	0002570465	S	260	AGGTGACCCTGGACAGCAACCTTCAAAAGTGACCTCCTAAGGGCACACCC	18	-	37217442-37217451:37227059-37227059:37227060-37227098	18p11	PREDICTED: Rattus norvegicus similar to AVLV472 (predicted) (RGD1563060_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577228	ILMN_296382	OLR375	NM_001000259.1	NM_001000259.1		293808	47577228	NM_001000259.1	Olr375	NP_001000259.1	ILMN_1650286	0006520450	S	815	CAGAGGATGAGGACCGCCAAATTGCCCTGGTTTACATCTTTGGTACTCCG	1	+	216853904-216853953	1q43	Rattus norvegicus olfactory receptor 375 (Olr375), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr375; ratchr1-217014288-217015247_ORF	Olr375; ratchr1-217014288-217015247_ORF
Rattus norvegicus	RefSeq	GI_62653229-S	ILMN_65336	CEP57	XM_235823.4	XM_235823.4		315423	109483074	XM_235823.4	Cep57	XP_235823.4	ILMN_1369111	0005290184	S	2327	GAATGGGGGGTGTTGGAAAATGTACGCATTTGCAGGTTTTAGACAGTACC	8	-	10608478-10608527	8q11	PREDICTED: Rattus norvegicus centrosomal protein 57 (Cep57), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with fibroblast growth factor [goid 17134] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_21426812	ILMN_51882	UA20	NM_144742.1	NM_144742.1		246251	21426812	NM_144742.1	Ua20	NP_653343.1	ILMN_1650870	0000540136	S	910	ACCTAGAAGACGGGTGAATGGGAAGGGGAGTGGTTCTGATACTGTGTCTG					Rattus norvegicus putative UA20 protein (Ua20), mRNA.					
Rattus norvegicus	RefSeq	GI_62664927-S	ILMN_274972	TNRC9_PREDICTED	XM_001065948.1	XM_001065948.1		291908	109508495	XM_001065948.1	Tnrc9_predicted	XP_001065948.1	ILMN_1367193	0001570068	S	2376	CGGCATACGTTGTGACAATATCTATAGCCACCGTTAGCCCTTCATGTCCA				19p11	PREDICTED: Rattus norvegicus trinucleotide repeat containing 9 (predicted) (Tnrc9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650262-S	ILMN_51069	MAP4K3	XM_343006.3	XM_343006.3		170920	109477862	XM_343006.3	Map4k3	XP_343007.2	ILMN_1368495	0006840091	S	4021	TTACCAAGATCGATGGCAAGGTGTAGCGAAGCGCACGCCTCTGACTCTGG	6	-	3473847-3473896	6q11	PREDICTED: Rattus norvegicus mitogen-activated protein kinase kinase kinase kinase 3 (Map4k3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54019418-S	ILMN_287138	PSMB6	NM_057099.2	NM_057099.2		29666	54019418	NM_057099.2	Psmb6	NP_476440.2	ILMN_1354766	0003850735	S	718	CCACCTCCCTGAAGCCTAGGATTCCCATCCCGACGCACAAGCTAATAAAC	10	+	57372647-57372656:57372657-57372696	10q24	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 6 (Psmb6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Psmb6l	Psmb6l
Rattus norvegicus	RefSeq	GI_62666927-S	ILMN_292247	KLHL15_PREDICTED	XM_001056775.1	XM_001056775.1		314111	109511874	XM_001056775.1	Klhl15_predicted	XP_001056775.1	ILMN_1362048	0003840066	S	771	GTGCAGTCTTGGCTGCGACATGATAGACGACGGTGGAGACACACAGATAC				Xq31	PREDICTED: Rattus norvegicus kelch-like 15 (Drosophila) (predicted) (Klhl15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642659-S	ILMN_54979	ANKRD32_PREDICTED	XM_226614.4	XM_226614.4		294601	109464196	XM_226614.4	Ankrd32_predicted	XP_226614.4	ILMN_1370042	0000130017	S	2837	GGGGGAGTTGCCCTTGGATTATGTGCTGTCCCCTAAAGACAAGGAAGAAC	2	-	4362634-4362683	2q11	PREDICTED: Rattus norvegicus ankyrin repeat domain 32 (predicted) (Ankrd32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642661-S	ILMN_54979	ANKRD32_PREDICTED	XM_226614.4	XM_226614.4		294601	109464196	XM_226614.4	Ankrd32_predicted	XP_226614.4	ILMN_1370104	0002690017	S	1592	GTGTCCAACTTGTATGAAAGGAGCCTGGCCTCTCGTGGAGATGCTCGTCA	2	-	4424033-4424082	2q11	PREDICTED: Rattus norvegicus ankyrin repeat domain 32 (predicted) (Ankrd32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47059170-S	ILMN_286699	DHX16	NM_212496.1	NM_212496.1		294232	47059170	NM_212496.1	Dhx16	NP_997661.1	ILMN_1366344	0006020427	S	3057	GCCACGCTGGCTGCTCTACCATGAGCTTGTCTTGACCACCAAGGAGTTCA				20p12	Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 16 (Dhx16), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Dbp2; Ddx16	Dbp2; Ddx16
Rattus norvegicus	RefSeq	GI_62663263-S	ILMN_277899	RGD1566033_PREDICTED	XM_001070540.1	XM_001070540.1		502115	109505482	XM_001070540.1	RGD1566033_predicted	XP_001070540.1	ILMN_1350077	0007040600	S	326	GTGACTTGAAGCGCCAGAACATGCAGGATACCAAGAAGTCCGAGTGTCTG				17p14	PREDICTED: Rattus norvegicus similar to BC003940 protein (predicted) (RGD1566033_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661710-S	ILMN_57061	RAI16_PREDICTED	XM_224339.4	XM_224339.4		306015	109501866	XM_224339.4	Rai16_predicted	XP_224339.4	ILMN_1361461	0006220079	S	1591	CTGTATGTGGCCCGGGGCTCGCCAGAGCCAGAGAGCTATGAGGATAACCT	15	-	50986304-50986304:50986408-50986456	15p11	PREDICTED: Rattus norvegicus retinoic acid induced 16 (predicted) (Rai16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978866-S	ILMN_274145	GABRB1	NM_012956.1	NM_012956.1		25450	6978866	NM_012956.1	Gabrb1	NP_037088.1	ILMN_1357628	0005360603	S	1847	ACAGTGGACCCTGCCGTCCACCTGCACTGTGTTCTGGGTAAACTGTAACC	14	-	38530300-38530349	14p11	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit beta 1 (Gabrb1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence TAS]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts [goid 15276] [evidence TAS]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	GARB1	GARB1
Rattus norvegicus	RefSeq	GI_62657626-S	ILMN_59642	LOC360696	XM_346909.2	XM_346909.2		360696	62657626	XM_346909.2	LOC360696	XP_346910.2	ILMN_1353530	0001980041	S	568	GAGAAAAAGCCGGCGTGAGGACGCACACGTTTAATCCCAGCAGCACTGGG					PREDICTED: Rattus norvegicus hypothetical LOC360696 (LOC360696), mRNA.					
Rattus norvegicus	RefSeq	GI_58219529-S	ILMN_280539	KLRB1A	NM_001010964.1	NM_001010964.1		362443	58219529	NM_001010964.1	Klrb1a	NP_001010964.1	ILMN_1375160	0000670609	S	859	CATCCTGTGAGGGAGTTCTGTGGAAAGAAGACCAGGCAGCTGAGGGTCAC	4	-	165637583-165637632	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily B, member 1A (Klrb1a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	NKR-P1A; Nkrp1a; Klrb1a	NKR-P1A; Nkrp1a; Klrb1a
Rattus norvegicus	RefSeq	GI_62658463	ILMN_271501	LOC498145	NM_001017485.1	NM_001017485.1		498145	62945325	NM_001017485.1	LOC498145	NP_001017485.1	ILMN_1651193	0001690435	S	1341	GCCGGTCTGTAGGCTGTGCCGTCCACTTCTTGTAAGCTGTACTTGGGTCA	12	-	11341898-11341947	12p11	Rattus norvegicus similar to RIKEN cDNA 2810453I06 (LOC498145), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62667045-S	ILMN_268390	RGD1560239_PREDICTED	XM_001069708.1	XM_001069708.1		501588	109512065	XM_001069708.1	RGD1560239_predicted	XP_001069708.1	ILMN_1354665	0001940112	S	2378	GGGCAAGAATGACTTTGGAGTTCCTTGACCACCTTGGCTCCCTCAAAACA				Xq31	PREDICTED: Rattus norvegicus similar to testis protein TEX11 (predicted) (RGD1560239_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644415-S	ILMN_274398	RGD1305087_PREDICTED	XM_001077752.1	XM_001077752.1		365946	109467674	XM_001077752.1	RGD1305087_predicted	XP_001077752.1	ILMN_1355597	0001400504	S	1338	ATCATGGATCCCTAAAGCTACAGTCCAGGCTGTCTTGGGCCCTCTAGCTC				2q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933425K02 (predicted) (RGD1305087_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718201-S	ILMN_269637	LOC689811	XM_001072103.1	XM_001072103.1		689811	109512911	XM_001072103.1	LOC689811	XP_001072103.1	ILMN_1373784	0004280022	S	95	CTCACAAAGGCAATGAAGAGACTTTGGAGACTGGCTGCACACATTCAAGT	Un|NW_047848.1	-	234003-234012:234085-234124		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC689811), mRNA.					
Rattus norvegicus	RefSeq	GI_62717852-S	ILMN_269637	LOC689811	XM_001072103.1	XM_001072103.1		689811	109512911	XM_001072103.1	LOC689811	XP_001072103.1	ILMN_1372184	0002230397	S	384	CTCAACAAGTCATTGTCAGAGGGTTCAGTCTCCTGCTTCCTCAGAAGAGC	Un|NW_047848.1	-	233714-233763		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC689811), mRNA.					
Rattus norvegicus	RefSeq	GI_62642219-S	ILMN_268417	KIF11	XM_001060913.1	XM_001060913.1		171304	109460041	XM_001060913.1	Kif11	XP_001060913.1	ILMN_1361476	0002120750	S	4421	CTGTGCAGTAGGACAGTCCTTTGTCATCCTTCCAAGGCCTGGGTTCCAGG	1	+	241722515-241722564	1q53	PREDICTED: Rattus norvegicus kinesin family member 11 (Kif11), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; Separation of duplicated centrosome components at the beginning of mitosis. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle [goid 7100] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the spindle pole body (SPB). The SPB is the microtubule organizing center in fungi, and is functionally homologous to the animal cell centrosome [goid 51300] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642217-S	ILMN_268417	KIF11	XM_001060913.1	XM_001060913.1		171304	109460041	XM_001060913.1	Kif11	XP_001060913.1	ILMN_1349747	0000610750	S	1849	GGAAGAGTTGATCAGGGACGGCAGTGAGAAACAGAAGGCCATGCTGGACG	1	+	241704101-241704150	1q53	PREDICTED: Rattus norvegicus kinesin family member 11 (Kif11), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; Separation of duplicated centrosome components at the beginning of mitosis. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle [goid 7100] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the spindle pole body (SPB). The SPB is the microtubule organizing center in fungi, and is functionally homologous to the animal cell centrosome [goid 51300] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978472-S	ILMN_65475	AGTR2	NM_012494.2	NM_012494.2		24182	71896617	NM_012494.2	Agtr2	NP_036626.1	ILMN_1362684	0005340441	S	1023	TCATTGACCTGGCACTTCCTTTTGCCATCCTCCTGGGATTCACCAACAGC	Un|NW_047899.1	-	53940-53989		Rattus norvegicus angiotensin II receptor, type 2 (Agtr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process that increases the size of a blood vessel via the renin-angiotensin system [goid 2033] [evidence ISS]; The process by which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system [goid 2035] [evidence ISS]; The regulation of the levels, transport, and metabolism of sodium ions within a cell or between a cell and its external environment [goid 6883] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The process of renal sodium excretion [goid 30147] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence TAS]; Any process that activates or increases the activity of a phosphoprotein phosphatase [goid 32516] [evidence ISS]; Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42990] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the nerve growth factor receptor signaling pathway [goid 51387] [evidence ISS]	Interacting selectively with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide [goid 1965] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence TAS];  [goid 4945] [evidence ISS];  [goid 4945] [evidence IEA]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]	AT2R; AT2-R	AT2R; AT2-R
Rattus norvegicus	RefSeq	GI_18959227-S	ILMN_267476	GATA3	NM_133293.1	NM_133293.1		85471	18959227	NM_133293.1	Gata3	NP_579827.1	ILMN_1371339	0001770390	S	1055	ACAGACCCCTGACTATGAAGAAGGAGGGCATCCAGACCCGAAACCGTAAG	17	+	80011294-80011343	17q12.3	Rattus norvegicus GATA binding protein 3 (Gata3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IC ]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo [goid 1823] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-4 production [goid 32753] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-4 production [goid 32753] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cytokines [goid 42035] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cytokines [goid 42035] [evidence ISS]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence IEA]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence IEA]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657957-S	ILMN_63395	LOC498089	XM_573295.1	XM_573295.1		498089	62657957	XM_573295.1	LOC498089	XP_573295.1	ILMN_1372258	0004730278	S	2438	TGCTTTTGATGTAGTTCGAGATAGCAGAGAGGAGGCAGCCAGCGGCTCTC				11q22	PREDICTED: Rattus norvegicus similar to deltex 3-like (LOC498089), mRNA.					
Rattus norvegicus	RefSeq	GI_62656426-S	ILMN_65869	LOC501694	XM_577095.1	XM_577095.1		501694	62656426	XM_577095.1	LOC501694	XP_577095.1	ILMN_1362614	0006370156	S	919	CAATGCAGAACCTTGGTAACCAGGCAACCCACTGGTTAGAGCAAGGCCTG				10q22	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC501694), mRNA.					
Rattus norvegicus	RefSeq	GI_62650908-S	ILMN_277833	PLEK2_PREDICTED	XM_001080879.1	XM_001080879.1		314260	109479553	XM_001080879.1	Plek2_predicted	XP_001080879.1	ILMN_1363940	0002470112	S	1696	GCGTCCTTGGGGACCATAGTACCACCTCTCAATTGGAACACTAACTCTGG				6q24	PREDICTED: Rattus norvegicus pleckstrin 2 (predicted) (Plek2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638680-S	ILMN_61589	PRDM7_PREDICTED	XM_344847.2	XM_344847.2		365155	62638680	XM_344847.2	Prdm7_predicted	XP_344848.2	ILMN_1363611	0003450551	S	2239	CTGGGCTTTACACAGAAGTCAAACCTCATCCGGCACCTGAGGACACACAC				1q12	PREDICTED: Rattus norvegicus PR domain containing 7 (predicted) (Prdm7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662118-S	ILMN_65624	LOC364493	XM_344471.2	XM_344471.2		364493	62662118	XM_344471.2	LOC364493	XP_344472.2	ILMN_1371981	0001570279	S	214	AGCATGAAGGGTTCCACGCCGCTCTCCATAAGAGCAACAGCTCCTTCCGA					PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC364493), mRNA.					
Rattus norvegicus	RefSeq	GI_62645466-S	ILMN_266123	APIP_PREDICTED	XM_001072220.1	XM_001072220.1		295961	109470290	XM_001072220.1	Apip_predicted	XP_001072220.1	ILMN_1357552	0000510632	S	682	CTAGTCAGGCGTCACGGGGTGTACGTGTGGGGAGAAACATGGGAGAAAGC				3q32	PREDICTED: Rattus norvegicus APAF1 interacting protein (predicted) (Apip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079258-S	ILMN_281334	CCDC41	NM_001014266.1	NM_001014266.1		366872	62079258	NM_001014266.1	Ccdc41	NP_001014288.1	ILMN_1368593	0007050288	S	2205	CGTGTGGCCTCCAGGTGCTTTCTTACTGTTTGCCAAAATTGAGCTGCCTC	7	+	31983912-31983961	7q13	Rattus norvegicus coiled-coil domain containing 41 (Ccdc41), mRNA.					
Rattus norvegicus	RefSeq	GI_62658013-S	ILMN_280293	RGD1559546_PREDICTED	XM_001073107.1	XM_001073107.1		498097	109494526	XM_001073107.1	RGD1559546_predicted	XP_001073107.1	ILMN_1365591	0006110181	S	871	CCCGTGAAGCACATCCACAGGAAGAAAACAAAGAGGGCAGTGCGCCCCAC				11q22	PREDICTED: Rattus norvegicus similar to WD repeat domain 53 (predicted) (RGD1559546_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506942-S	ILMN_277926	P2RX7	NM_019256.1	NM_019256.1		29665	9506942	NM_019256.1	P2rx7	NP_062129.1	ILMN_1370429	0006200605	S	3196	GAAAAAGAGAGGGGAAGAGCGCCTGGGGAGGTGGTTCAGTGGGTAAGAGC	12	-	35074329-35074378	12q16	Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 7 (P2rx7), mRNA.	Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the nuclear inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5639] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; A cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32059] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome [goid 1845] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The transfer of a phospholipid from its site of synthesis to the plasma membrane [goid 6649] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; Any process involved in maintaining the equilibrium of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell [goid 6884] [evidence ISS]; The evagination of a membrane, resulting in formation of a vesicle [goid 6900] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the plasma membrane [goid 7009] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IDA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence ISS]; The process by which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10467] [evidence ISS]; Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 10524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of glutamate [goid 14049] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of gamma-aminobutyric acid [goid 14054] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence ISS]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence TAS]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]; The assembly of a bleb, a cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32060] [evidence ISS]; The assembly of a bleb, a cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32060] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a prostaglandin from a cell or group of cells [goid 32308] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production [goid 32731] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 32963] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface [goid 34405] [evidence ISS]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IDA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; The directed movement of nicotinamide adenine dinucleotide into, out of, within or between cells; transport may be of either the oxidized form, NAD, or the reduced form, NADH [goid 43132] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein in a multicellular organism, occurring at the tissue, organ, or organismal level [goid 44254] [evidence ISS]; The translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer [goid 45332] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cytolysis [goid 45919] [evidence IDA]; The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid [goid 46513] [evidence ISS]; The formation of a pore complex, a small opening in a membrane that allows the passage of liquids and/or gases [goid 46931] [evidence IDA]; The formation of a pore complex, a small opening in a membrane that allows the passage of liquids and/or gases [goid 46931] [evidence IMP]; The formation of a pore complex, a small opening in a membrane that allows the passage of liquids and/or gases [goid 46931] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 alpha from a cell or group of cells [goid 50717] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51495] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus [goid 51602] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IDA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive [goid 51901] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence IDA]; Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence TAS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules [goid 15267] [evidence ISS]; Increases the activity of a protein serine/threonine kinase [goid 43539] [evidence IC ]; Increases the activity of a protein serine/threonine kinase [goid 43539] [evidence IMP]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647329-S	ILMN_61874	LOC500140	XM_575492.1	XM_575492.1		500140	62647329	XM_575492.1	LOC500140	XP_575492.1	ILMN_1352655	0005720037	S	1196	GCAGAAGAACAAGTGGAGTCTTGCTGTCATGTGCCTGTCACTCACCACCC				4q24	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (LOC500140), mRNA.					
Rattus norvegicus	RefSeq	GI_62654602-S	ILMN_66137	LOC301165	XM_236813.3	XM_236813.3		301165	62654602	XM_236813.3	LOC301165	XP_236813.3	ILMN_1351574	0000460068	S	1546	CCGGCCCTATTGAGGAGTGATGCCACAGCAGAAAGTCAGGACAGAACCCC				9q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932415M13 (LOC301165), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654345-S	ILMN_52544	LOC501057	XM_345984.2	XM_345984.2		501057	62654345	XM_345984.2	LOC501057	XP_345985.2	ILMN_1356002	0002970092	S	1543	CGTGATGGAGTATCCCGGCAAGAAGAAGGAAAGGCTGCTGTTGGTCTGAC					PREDICTED: Rattus norvegicus similar to Mtap4 protein (LOC501057), mRNA.					
Rattus norvegicus	RefSeq	GI_62667433-S	ILMN_62450	RGD1559599_PREDICTED	XM_229219.4	XM_229219.4		317624	109511246	XM_229219.4	RGD1559599_predicted	XP_229219.3	ILMN_1354537	0005670446	S	462	TTCGGGCATGTCAAACATCAATATCCACTCTGTGAGCCCCCTCAGCTGTC	X	+	140856162-140856211	Xq36	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 48 (predicted) (RGD1559599_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647163-S	ILMN_53562	LOC502750	XM_578249.1	XM_578249.1		502750	62647163	XM_578249.1	LOC502750	XP_578249.1	ILMN_1355137	0002260484	S	2065	CGATCGCCACTTTAGAGGAAAAGTACCCGCTTATCCCCGCGGCAAGGCTG				4q22	PREDICTED: Rattus norvegicus similar to Wee1-like protein kinase (WEE1hu) (LOC502750), mRNA.					
Rattus norvegicus	RefSeq	GI_62644866-S	ILMN_52782	DOLPP1_PREDICTED	XM_231129.4	XM_231129.4		296624	109467998	XM_231129.4	Dolpp1_predicted	XP_231129.3	ILMN_1355902	0000730446	S	1123	CAGCTCCTGACTGGGTGGAAAGTGCTCTTGGCATGGGCCTCAGCGTGTGG	3	+	9445103-9445152	3p12	PREDICTED: Rattus norvegicus dolichyl pyrophosphate phosphatase 1 (predicted) (Dolpp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662152	ILMN_53082	RGD1310975_PREDICTED	XM_224583.3	XM_224583.3		306231	62662152	XM_224583.3	RGD1310975_predicted	XP_224583.3	ILMN_1651066	0005420519	S	2274	CTCTTGGGCAGTCCTTTGCCATGGGCAGAACTCTTGGGTCATGTGGAAAC				16p16	PREDICTED: Rattus norvegicus similar to CG31759-PA (predicted) (RGD1310975_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27706983-S	ILMN_61384	RGD1561382_PREDICTED	XM_228595.2	XM_228595.2		302432	109510813	XM_228595.2	RGD1561382_predicted	XP_228595.2	ILMN_1361579	0001230301	S	953	ACCGGGTGTGTGGCATTGATCCCCCAAAATATGTGTTCCTGTGGGGTTCC	X	-	79430452-79430501	Xq22	PREDICTED: Rattus norvegicus similar to Smage-1 protein (predicted) (RGD1561382_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641524-S	ILMN_292128	MMP21_PREDICTED	XM_001054903.1	XM_001054903.1		293573	109463056	XM_001054903.1	Mmp21_predicted	XP_001054903.1	ILMN_1374062	0002320128	S	1350	CATCCCCAGTCCCTTGGACACGGCCTTCTATGAGCGGAGGCAGCAGCTAA				1q41	PREDICTED: Rattus norvegicus matrix metalloproteinase 21 (predicted) (Mmp21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644569-A	ILMN_296368	PIGK	NM_001011953.1	NM_001011953.1		295543	58865475	NM_001011953.1	Pigk	NP_001011953.1	ILMN_1376262	0002630609	S	1065	CTCAGATAATACACCAGAAGCCGAAGCTGAAGGACTGGCACCCTCCCGGA	2	+	251037634-251037683	2q45	Rattus norvegicus phosphatidylinositol glycan, class K (Pigk), mRNA.	An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor [goid 42765] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor [goid 3923] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642338-S	ILMN_59352	MRVLDC1_PREDICTED	XM_219885.2	XM_219885.2		309375	62642338	XM_219885.2	Mrvldc1_predicted	XP_219885.2	ILMN_1371697	0006350100	S	2647	ACGCAGGGGTGGGTTTTGGTGTAGGGAGGGTGGTTAGAGAGAGGGGCCAT				1q54	PREDICTED: Rattus norvegicus MARVEL (membrane-associating) domain containing 1 (predicted) (Mrvldc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955159	ILMN_58131	MRGA10	NM_145787.1	NM_145787.1		252960	21955159	NM_145787.1	Mrga10	NP_665730.1	ILMN_1650791	0001450400	S	654	ATCGTTCTGTGGCGCTGGGCGGATGAAGCTCACCAGATTGTACGCGACCA				1q22	Rattus norvegicus nuclear receptor MrgA10 RF-amide G protein-coupled receptor (Mrga10), mRNA.					
Rattus norvegicus	RefSeq	GI_62718217-S	ILMN_48787	LOC501327	XM_576738.1	XM_576738.1		501327	62718217	XM_576738.1	LOC501327	XP_576738.1	ILMN_1363779	0002640364	S	979	GGACTTCTGAAGGAACTTGGTGAGTTTCCCTGGACAAATGCTGGGAGCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC078986 (LOC501327), mRNA.					
Rattus norvegicus	RefSeq	GI_47577318-S	ILMN_271716	OLR415	NM_001000386.1	NM_001000386.1		296677	47577318	NM_001000386.1	Olr415	NP_001000386.1	ILMN_1353759	0000060152	S	664	GGATACATTGGGGCCACTATCCTAAGAACTCCCTCCACCAAGGGAATCTT	3	+	16389442-16389491	3q11	Rattus norvegicus olfactory receptor 415 (Olr415), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr415	Olr415
Rattus norvegicus	RefSeq	GI_62665013-S	ILMN_288999	GADD45GIP1	XM_001071308.1	XM_001071308.1		288916	109508619	XM_001071308.1	Gadd45gip1	XP_001071308.1	ILMN_1371515	0002940601	S	820	CGCAAGCGCCTAAAGGAAGAAAGGCAGCGACAGAAGAAGGAGGCTCGAAT				19q11	PREDICTED: Rattus norvegicus growth arrest and DNA-damage-inducible, gamma interacting protein 1 (Gadd45gip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948413-S	ILMN_272653	MGC93975	NM_001004221.1	NM_001004221.1		292878	51948413	NM_001004221.1	MGC93975	NP_001004221.1	ILMN_1364067	0001940372	S	1412	CACCAGGAGAGGACTGTGGGCCTCCATGTTAGTCTGTCTTCTGTGAATGC	1	-	94967886-94967935	1q22	Rattus norvegicus similar to 2310044H10Rik protein (MGC93975), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62645152-S	ILMN_281655	GCA_PREDICTED	XM_001055585.1	XM_001055585.1		295647	109469997	XM_001055585.1	Gca_predicted	XP_001055585.1	ILMN_1359878	0005670082	S	663	GGCCGGATTTTCTTTGATGACTATGTCGCCTGCTGTGTGAAGCTCCGTGC				3q21	PREDICTED: Rattus norvegicus grancalcin (predicted) (Gca_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656020-S	ILMN_274930	RGD1564036_PREDICTED	XM_573080.1	XM_573080.1		497895	62656020	XM_573080.1	RGD1564036_predicted	XP_573080.1	ILMN_1350909	0002630440	S	849	GGCCGCCTCTAACCATTCACACTACCACTCCACAGCCAGACAAGCCTGAC	10	+	35750960-35751009	10q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3010026O09 (predicted) (RGD1564036_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646012-S	ILMN_289060	LOC296235	XM_001058387.1	XM_001058387.1		296235	109470994	XM_001058387.1	LOC296235	XP_001058387.1	ILMN_1350382	0005270095	S	498	GAATGTCAACCTCTCTGGCCCTGCCTCAACACTCAAATGGATGATCTTGC				3q41	PREDICTED: Rattus norvegicus similar to Cystatin S precursor (LM protein) (LOC296235), mRNA.			 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651182-A	ILMN_286010	ASB2	NM_001011984.1	NM_001011984.1		299266	58865543	NM_001011984.1	Asb2	NP_001011984.1	ILMN_1376919	0005690450	S	2191	ACTAGAGCTTCGCTGGAAGTAAGAGCCGATGTGCGGAGTGGAGATGGCGC	6	-	127609744-127609793	6q32	Rattus norvegicus ankyrin repeat and SOCS box-containing 2 (Asb2), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34858217-S	ILMN_290502	RGD1559837_PREDICTED	XM_227432.2	XM_227432.2		295256	34858217	XM_227432.2	RGD1559837_predicted	XP_227432.2	ILMN_1348798	0001770181	S	845	CCCTGTGCAGGAACCTCTCTGTGAAGTATGCTATACCAACTCTGATCCTG	2	-	189088301-189088350	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1559837_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667175-S	ILMN_70418	LOC302412	XM_228548.3	XM_228548.3		302412	62667175	XM_228548.3	LOC302412	XP_228548.3	ILMN_1369729	0006550373	S	1369	GCTCTGCAATAGGCTACCATGCTGAAAACTACCTGGGTGTGTCACCGCCC					PREDICTED: Rattus norvegicus similar to hypothetical protein 6430402L03 (LOC302412), mRNA.					
Rattus norvegicus	RefSeq	GI_62666186-S	ILMN_62267	LOC502443	XM_577924.1	XM_577924.1		502443	62666186	XM_577924.1	LOC502443	XP_577924.1	ILMN_1349876	0005910722	S	345	CCCACCTTCGGCAAAGAATCCCACCATCCCCAATGGCACAGCCAGAGGAA					PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC67567 (LOC502443), mRNA.					
Rattus norvegicus	RefSeq	GI_62661642-S	ILMN_53594	RGD1562099_PREDICTED	XM_237949.4	XM_237949.4		290325	109501816	XM_237949.4	RGD1562099_predicted	XP_237949.4	ILMN_1374533	0002630735	S	2286	AGAGATGGAAAAGCTCCACAGAAGCCTGAGGGAGGTCGCTGAAAACGCAC	15	+	45069385-45069434	15p12	PREDICTED: Rattus norvegicus similar to putative protein product of HMFN0672 (predicted) (RGD1562099_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639374-S	ILMN_52086	RGD1562305_PREDICTED	XM_214902.4	XM_214902.4		292793	109458533	XM_214902.4	RGD1562305_predicted	XP_214902.3	ILMN_1362293	0003840338	S	1984	TCATCAAGGTCAAAGCGGTTACGGAGGCCAGCACGGAGGGGCCGCAATCA	1	+	85799417-85799466	1q21	PREDICTED: Rattus norvegicus similar to suprabasal-specific protein suprabasin (predicted) (RGD1562305_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662784-S	ILMN_69889	LOC497707	XM_579601.1	XM_579601.1		497707	62662784	XM_579601.1	LOC497707	XP_579601.1	ILMN_1360525	0003710167	S	1629	GCCACTGCTTGGGAACACAGGAGCGTCTTAATCGGGATTTTCCTTTTGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_057184 (LOC497707), mRNA.					
Rattus norvegicus	RefSeq	GI_62648409-S	ILMN_273923	RGD1562513_PREDICTED	XM_001067888.1	XM_001067888.1		502901	109474321	XM_001067888.1	RGD1562513_predicted	XP_001067888.1	ILMN_1353107	0006900450	S	538	GATGGACCCAGTGGATCTTGGTTTTGGGAAGATGGCTCTTCTCCTCTCTC				4q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9830005G06 (predicted) (RGD1562513_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19923700-S	ILMN_294304	SV2B	NM_057207.2	NM_057207.2		117556	19923700	NM_057207.2	Sv2b	NP_476555.1	ILMN_1364550	0003390671	S	5534	GGGAGCAATTGTGGAGTTTCAAAGGTTCTAGCTTGAGGGTCAGCCTTGTT				1q31	Rattus norvegicus synaptic vesicle glycoprotein 2b (Sv2b), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. It does not occur during cholinergic synaptic transmission. Instead, acetylcholine is enzymatically degraded in the synaptic cleft [goid 1504] [evidence TAS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645755-S	ILMN_51243	EXDL1_PREDICTED	XM_230476.4	XM_230476.4		311334	109468675	XM_230476.4	Exdl1_predicted	XP_230476.4	ILMN_1359613	0006020301	S	1415	ACCCGAGAGCCCAGTCCCTGCCTCCCAGACAGGCATTTCAGTCACAGTTT	3	-	106039631-106039680	3q35	PREDICTED: Rattus norvegicus exonuclease 3'-5' domain-like 1 (predicted) (Exdl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650290-S	ILMN_52372	RGD1310453_PREDICTED	XM_238480.4	XM_238480.4		299521	109477889	XM_238480.4	RGD1310453_predicted	XP_238480.4	ILMN_1359827	0004560435	S	930	CCAGCCCTCAGGGAAAGCATTGGTATTTGCCCCACGCCGAGGGAATACTT	6	+	8833844-8833853:8846569-8846608	6q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23451 (predicted) (RGD1310453_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741525-S	ILMN_274615	CLN3	NM_001006971.1	NM_001006971.1		293485	55741525	NM_001006971.1	Cln3	NP_001006972.1	ILMN_1352370	0005270093	S	1545	AGTGGGAAGATCTACAGTCCTGCCCTACCTCAGCAGGGAGCCCCCATTGT	1	-	185713176-185713225	1q36	Rattus norvegicus ceroid-lipofuscinosis, neuronal 3 (Cln3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A double-membrane-bounded vesicle in which endogenous cellular material is sequestered; known as autophagosome in yeast [goid 5776] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 44433] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]	The fusion of an autophagic vacuole with a vacuole (yeast) or lysosome (e.g. mammals and insects). In the case of yeast, inner membrane-bounded structures (autophagic bodies) appear in the vacuole [goid 46] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; The chemical reactions and pathways involving globosides, globotetraosylceramides, ceramides containing a core structure of GalNAc-beta-(1,3)-Gal-alpha(1,4)Glc(I). Globosides are the major neutral glycosphingolipid in normal kidneys and erythrocytes [goid 1575] [evidence ISS]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence ISS]; The chemical reactions and pathways involving glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. They are neutral glycolipids containing equimolar amounts of fatty acid, glucose, and sphingosine or a sphingosine derivative [goid 6678] [evidence ISS]; The chemical reactions and pathways involving galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group [goid 6681] [evidence ISS]; The chemical reactions and pathways involving sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine, any of a class of phospholipids in which the amino group of sphingosine is in amide linkage with one of several fatty acids, while the terminal hydroxyl group of sphingosine is esterified to phosphorylcholine [goid 6684] [evidence ISS]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion [goid 7042] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure, which then fuse with the lysosome (or vacuole) releasing a single-membrane-bounded autophagic bodies which are then degraded within the lysosome (or vacuole). Though once thought to be a purely non-selective process, it appears that some types of macroautophagy, e.g. macropexophagy, macromitophagy, may involve selective targeting of the targets to be degraded [goid 16236] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of macroautophagy [goid 16242] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence ISS]; The chemical reactions and pathways involving neurotransmitters, any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42133] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42987] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion [goid 51453] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the cytosol of a cell or between the cytosol and its surroundings [goid 51480] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94583	MGC94583
Rattus norvegicus	RefSeq	GI_62641656-S	ILMN_51423	LOC499295	XM_579944.1	XM_579944.1		499295	62641656	XM_579944.1	LOC499295	XP_579944.1	ILMN_1369647	0000510026	S	45	CGGATGGAGGGTTTCCTGCGATCTTAACCATTCAACTGCCTCCTTCCGTT					PREDICTED: Rattus norvegicus LOC499295 (LOC499295), mRNA.					
Rattus norvegicus	RefSeq	GI_62641503	ILMN_66394	DDB1	XM_342024.2	XM_342024.2		64470	62641503	XM_342024.2	Ddb1	XP_342025.1	ILMN_1651177	0004480132	S	3553	CCCACCCTTGTTTTCTTGGCATGGGAGGCTTTTCCCTAAGCCACCTGCCC				1q43	PREDICTED: Rattus norvegicus damage-specific DNA binding protein 1 (Ddb1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence ISS]; A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence IEA]; The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence TAS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with damaged DNA [goid 3684] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576816-S	ILMN_294055	OLR199	NM_001001034.1	NM_001001034.1		405920	47576816	NM_001001034.1	Olr199	NP_001001034.1	ILMN_1365168	0003520450	S	603	CAGGGACTACCAGTTGGCCTTGGCCTGGATTATGGCTGGAAGTGACATGG	1	+	163021703-163021752	1q33	Rattus norvegicus olfactory receptor 199 (Olr199), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr199	Olr199
Rattus norvegicus	RefSeq	GI_62657802-S	ILMN_49053	RGD1311662_PREDICTED	XM_221623.4	XM_221623.4		304050	109493003	XM_221623.4	RGD1311662_predicted	XP_221623.4	ILMN_1350633	0002370731	S	564	TGACGGAAGCCACAAACTGCAGGCTCAAGCAAAGGATGCCATAGAAGCCC	11	-	37474452-37474487:37474785-37474798	11q12	PREDICTED: Rattus norvegicus similar to open reading frame 9 (RGD1311662_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718699-S	ILMN_54712	LOC501452	XM_580194.1	XM_580194.1		501452	62718699	XM_580194.1	LOC501452	XP_580194.1	ILMN_1365133	0001090039	S	124	GAAATGCCGCTGGAGGAAAAAATAGGCGTACCCCGGAGGACGAAGTACAA					PREDICTED: Rattus norvegicus LOC501452 (LOC501452), mRNA.					
Rattus norvegicus	RefSeq	GI_27465590-S	ILMN_283953	VOM2R27	NM_173130.1	NM_173130.1		286914	27465590	NM_173130.1	Vom2r27	NP_775153.1	ILMN_1361758	0001770139	S	2458	CAAGGGGAAGAACATGGTGGCTATGGAAGTCTTCTCTATCTTGGCTTCCA	1	-	64434476-64434525	1q12	Rattus norvegicus vomeronasal 2 receptor, 27 (Vom2r27), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Vom2r27	Vom2r27
Rattus norvegicus	RefSeq	GI_62644009-S	ILMN_289370	RGD1560554_PREDICTED	XM_578061.1	XM_578061.1		502576	62644009	XM_578061.1	RGD1560554_predicted	XP_578061.1	ILMN_1362484	0006100309	S	968	CTAAGACCTTGAAGTGGAAGTCAATGTTGGAGTCACATCCCCACTTGGTG	2	-	188926319-188926368	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1560554_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576172-S	ILMN_276362	OLR1358	NM_214822.1	NM_214822.1		287077	47576172	NM_214822.1	Olr1358	NP_999987.1	ILMN_1360200	0005340722	S	800	TAGCTGGGAGGGACATGGAAGCTGCAGTGATGTATGCAGTGGTGACCCCA	10	+	12124334-12124383	10q12	Rattus norvegicus olfactory receptor 1358 (Olr1358), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-12123535-12124476_ORF; Olr1358	ratchr10-12123535-12124476_ORF; Olr1358
Rattus norvegicus	RefSeq	GI_62638501-S	ILMN_294946	RGD1562524_PREDICTED	XR_008303.1	XR_008303.1		365088	109460723	XR_008303.1	RGD1562524_predicted		ILMN_1356845	0001850280	S	107	GTCATTACAGCCATGCTCTGGTGGCTGGTATCCCGAAAAGTGACAGCTGC				1p11	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (predicted) (RGD1562524_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46047419-S	ILMN_299245	AMIGO1	NM_206881.1	NM_206881.1		295365	46047419	NM_206881.1	Amigo1	NP_996764.1	ILMN_1368566	0002190053	S	1231	GGAGATAGCCTCAGCTCTTCTATGCTCAGTACCACACCCAACCATGACCC	2	+	203753862-203753911	2q34	Rattus norvegicus adhesion molecule with Ig like domain 1 (Amigo1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IPI]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence IPI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IDA]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_16758693-S	ILMN_268147	NPR2	NM_053838.1	NM_053838.1		116564	16758693	NM_053838.1	Npr2	NP_446290.1	ILMN_1353515	0002350551	S	3176	GGCTCTTAGGAGAGCGAAAAGGACCTCCTGGACTCCTGTAAATCCCAAGC	5	+	60127667-60127707:60127708-60127716	5q22	Rattus norvegicus natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) (Npr2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IMP]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence ISS]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA];  [goid 16941] [evidence IDA];  [goid 16941] [evidence IMP];  [goid 16941] [evidence ISS];  [goid 16941] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	NPR-B; GC-B	NPR-B; GC-B
Rattus norvegicus	RefSeq	GI_62659426-S	ILMN_273997	LOC688887	XM_001068704.1	XM_001068704.1		688887	109497973	XM_001068704.1	LOC688887	XP_001068704.1	ILMN_2039252	0000630709	S	328	TGCACAGAAAAAGGGTGGGAGCCTGAAGTCCCGTGCCTCAAACAATGTGT	13	-	52917109-52917119:52917479-52917517	13q13	PREDICTED: Rattus norvegicus similar to complement component factor H (LOC688887), mRNA.					
Rattus norvegicus	RefSeq	GI_62641077-S	ILMN_68517	RGD1561034_PREDICTED	XM_219097.4	XM_219097.4		308908	109459187	XM_219097.4	RGD1561034_predicted	XP_219097.3	ILMN_1359165	0003780435	S	774	ACCTACACCACCTCCCCAAGAAGGGCCAGAAGGCAGACCCACCAGATTCT	1	+	163110111-163110160	1q33	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC34805 (predicted) (RGD1561034_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650990-A	ILMN_296793	SLC8A3	NM_078620.1	NM_078620.1		140448	17530968	NM_078620.1	Slc8a3	NP_511175.1	ILMN_1376527	0001340113	S	4791	TCTTATACCCTGCCCCCAAGGGATCCAAGTCACCACATTGCCAAGGGGCC				6q24	Rattus norvegicus solute carrier family 8 (sodium/calcium exchanger), member 3 (Slc8a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence ISS]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + cation(out) = Ca2+(out) + cation(in) [goid 15368] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Ncx3	Ncx3
Rattus norvegicus	RefSeq	GI_12018267-S	ILMN_282523	ADCY5	NM_022600.1	NM_022600.1		64532	12018267	NM_022600.1	Adcy5	NP_072122.1	ILMN_1366363	0004590722	S	4744	CAGGACTGTTGATAAGGGGGAGGCAAGAGGACACCAGGCAAGGAGCAGTG	11	-	67291024-67291073	11q22	Rattus norvegicus adenylate cyclase 5 (Adcy5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]	The series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 1973] [evidence ISS]; The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7195] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IDA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence ISS]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645054	ILMN_62219	LOC499793	XM_575129.1	XM_575129.1		499793	62645054	XM_575129.1	LOC499793	XP_575129.1	ILMN_1650633	0003870066	S	158	TACCAGACACCTCCACCATGCCACCCAAGTTCGACCCAAAGTCGTTTGGT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (LOC499793), mRNA.					
Rattus norvegicus	RefSeq	GI_13928979-S	ILMN_302927	AQP3	NM_031703.1	NM_031703.1		65133	13928979	NM_031703.1	Aqp3	NP_113891.1	ILMN_1355321	0006020433	S	1487	TAGGCTTAGGGAGCGGGGGAGGCATAAGAGGGGCGTAGCTCACATCTGGA	5	-	58501907-58501956	5q22	Rattus norvegicus aquaporin 3 (Aqp3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	Any process that activates or increases the frequency, rate, or extent of an immune system process [goid 2684] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Catalysis of facilitated diffusion of glycerol (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15254] [evidence ISS]	MGC156623	MGC156623
Rattus norvegicus	RefSeq	GI_8393763-S	ILMN_280848	MCPT1	NM_017145.1	NM_017145.1		29265	8393763	NM_017145.1	Mcpt1	NP_058841.1	ILMN_1366293	0001990397	S	593	GCGTGGGCCTTTCCACAAGGTTACAAACAGCATACACTGGAGACTCTGGT	15	+	34272280-34272316:34272713-34272725	15p13	Rattus norvegicus mast cell protease 1 (Mcpt1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence NAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648879-S	ILMN_295086	SIT1	NM_001024344.1	NM_001024344.1		500449	66730476	NM_001024344.1	Sit1	NP_001019515.1	ILMN_1359954	0000110451	S	1122	GACCCGAAAACCCTGGACAGAGAATAGCCTTCATGCTGTGGCCTCTGGCG	5	-	59963424-59963473	5q22	Rattus norvegicus signaling threshold regulating transmembrane adaptor 1 (Sit1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell activation [goid 50863] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell activation [goid 50863] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence IEA]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643702-S	ILMN_60693	LOC499647	XM_579996.1	XM_579996.1		499647	62643702	XM_579996.1	LOC499647	XP_579996.1	ILMN_1362030	0004540750	S	475	TCTGCGGAGGCACAAGAAGGAGAACGAGAAATAGGAGACACAGTGCCCTC					PREDICTED: Rattus norvegicus LOC499647 (LOC499647), mRNA.					
Rattus norvegicus	RefSeq	Rn.12950	ILMN_68963	RGD1563485_PREDICTED	XM_217657.4	XM_217657.4		307992	109460303	XM_217657.4	RGD1563485_predicted	XP_217657.4	ILMN_1530424	0004210309	S	4921	TTTTAAGTAACAGTATTGAGGGTTACAAGTGATAAAGTCAGTTTTTATGG	1	+	264486487-264486536	1q55	PREDICTED: Rattus norvegicus similar to mKIAA0534 protein (predicted) (RGD1563485_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642532-S	ILMN_68963	RGD1563485_PREDICTED	XM_217657.4	XM_217657.4		307992	109460303	XM_217657.4	RGD1563485_predicted	XP_217657.4	ILMN_1370029	0000670504	S	4864	TCCCTCTAAGTGGGCAGTGTCCCAAAAGGCCAGAGACTGCTAGTGAGTTG	1	+	264486430-264486479	1q55	PREDICTED: Rattus norvegicus similar to mKIAA0534 protein (predicted) (RGD1563485_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.757	ILMN_62307	FNDC3B_PREDICTED	XM_226988.4	XM_226988.4		294925	109464644	XM_226988.4	Fndc3b_predicted	XP_226988.3	ILMN_1530426	0004920070	S	5355	TTTTGTGTGTTTTATACTTTTGTAATTTTAGGTCAGTTTAGTTCCTTGGC	2	-	113313975-113314024	2q24	PREDICTED: Rattus norvegicus fibronectin type III domain containing 3B (predicted) (Fndc3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643264-S	ILMN_62307	FNDC3B_PREDICTED	XM_226988.4	XM_226988.4		294925	109464644	XM_226988.4	Fndc3b_predicted	XP_226988.3	ILMN_1362012	0004210097	S	6314	CCCTGACACAAGAAATTCCAGTCACCTGAAGCAAACTGCCCTCTGTCCTC	2	-	113313016-113313065	2q24	PREDICTED: Rattus norvegicus fibronectin type III domain containing 3B (predicted) (Fndc3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659124-A	ILMN_263882	SERPINB3	NM_001008887.1	NM_001008887.1		304688	57114295	NM_001008887.1	Serpinb3	NP_001008887.1	ILMN_1376306	0002630242	S	845	CTGCCACAGGGGTGGAAACCCGCATACTATCTGCACCAAGGACCACAGAA	13	-	13339533-13339582	13p13	Rattus norvegicus serine protease inhibitor B3 (Serpinb3), mRNA.			Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18034790-S	ILMN_296324	NAPA	NM_080585.1	NM_080585.1		140673	18034790	NM_080585.1	Napa	NP_542152.1	ILMN_1360892	0005860047	S	1112	CTCCCAAAGGTGTCCTCCTGCTCTGGAAAACCCACCTGGACAGATTCTCC	1	+	76456833-76456882	1q21	Rattus norvegicus N-ethylmaleimide sensitive fusion protein attachment protein alpha (Napa), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence NAS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence ISS]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IEA]	alpha-SNAP	alpha-SNAP
Rattus norvegicus	RefSeq	GI_23463310-S	ILMN_302748	TMPRSS5	NM_153311.1	NM_153311.1		266681	23463310	NM_153311.1	Tmprss5	NP_695223.1	ILMN_1371325	0006620594	S	1907	CCTCCGTGAAGCAGAGGTCTACAAGGTAAGAAGGATGGAGTTGGGTTAGG	8	+	52379155-52379204	8q23	Rattus norvegicus transmembrane protease, serine 5 (spinesin) (Tmprss5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Amp	Amp
Rattus norvegicus	RefSeq	GI_20302084-S	ILMN_301232	UBB	NM_138895.1	NM_138895.1		192255	20302084	NM_138895.1	Ubb	NP_620250.1	ILMN_1359545	0004730338	S	999	CCGGCGGGCACTGATGGCATTACTCTGCACTCTAGCCATTTGCCCCAATT				10q23	Rattus norvegicus ubiquitin B (Ubb), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]	UBC	UBC
Rattus norvegicus	RefSeq	GI_62655276-S	ILMN_54201	RGD1305560_PREDICTED	XM_237329.4	XM_237329.4		301561	109486221	XM_237329.4	RGD1305560_predicted	XP_237329.4	ILMN_1371504	0003780112	S	2487	TCAGTCACTCCTCTCAGGCAAGCCAGTGATCTACAACAGAGCCAGGTGGC	9	+	80628139-80628183:80669151-80669155	9q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430031J16 (predicted) (RGD1305560_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648992-S	ILMN_51632	SMC2L1_PREDICTED	XM_342837.3	XM_342837.3		362519	109474910	XM_342837.3	Smc2l1_predicted	XP_342838.1	ILMN_1366131	0005220102	S	4689	CCACGTCAGCACAGTCATGCTCGTAGTTTTCAGAGCTCTAATGTGACCTG	5	+	69606758-69606807	5q23	PREDICTED: Rattus norvegicus SMC2 structural maintenance of chromosomes 2-like 1 (yeast) (predicted) (Smc2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650127-S	ILMN_64627	LOC366503	XM_345602.2	XM_345602.2		366503	62650127	XM_345602.2	LOC366503	XP_345603.2	ILMN_1362758	0004230114	S	1841	GCTTCACATCCGAGGGGGATGCTTAGAGGTCTGGGGTGGGAGCTGCACAA					PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC366503), mRNA.					
Rattus norvegicus	RefSeq	GI_47577248-S	ILMN_298432	OLR729	NM_001000574.1	NM_001000574.1		366116	47577248	NM_001000574.1	Olr729	NP_001000574.1	ILMN_1357196	0004200132	S	652	GTCATCCTGCACTCCTTGCGTTACCACAGTGTAGAGGGGAGACGGAAAGC	3	-	74444946-74444995	3q24	Rattus norvegicus olfactory receptor 729 (Olr729), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-74342019-74341093_ORF; Olr729	ratchr3-74342019-74341093_ORF; Olr729
Rattus norvegicus	RefSeq	GI_62657531-S	ILMN_54649	LOC497677	XM_579737.1	XM_579737.1		497677	62657531	XM_579737.1	LOC497677	XP_579737.1	ILMN_1371614	0001660609	S	3415	TATGTGTCCCTCATTAAGTGAAAGTGGCTACTAGACTATAAAATTATGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_203409 (LOC497677), mRNA.					
Rattus norvegicus	RefSeq	GI_62647485-S	ILMN_68978	LOC502775	XM_578273.1	XM_578273.1		502775	62647485	XM_578273.1	LOC502775	XP_578273.1	ILMN_1356671	0004010504	S	891	GAGCTGAGTTGGGGAGGAGGGAGAAGGGGGAGGTCGCTGTCTATCTGTCT					PREDICTED: Rattus norvegicus similar to ribosomal protein L24 (LOC502775), mRNA.					
Rattus norvegicus	RefSeq	GI_9506882-S	ILMN_274039	CD46	NM_019190.1	NM_019190.1		29333	9506882	NM_019190.1	Cd46	NP_062063.1	ILMN_1363832	0001770673	S	812	GGGATTTTACATGGAGGGCAGTAGCATGGTGGTCTGTGGTGCTAAGAGCT	13	-	110983476-110983481:110988382-110988425	13q27	Rattus norvegicus CD46 molecule, complement regulatory protein (Cd46), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; The acrosomal membrane region that underlies the acrosomal vesicle and is located toward the sperm nucleus. This region is responsible for molecular interactions allowing the sperm to penetrate the zona pellucida and fuses with the egg plasma membrane [goid 2079] [evidence IEA]; The acrosomal membrane region that underlies the acrosomal vesicle and is located toward the sperm nucleus. This region is responsible for molecular interactions allowing the sperm to penetrate the zona pellucida and fuses with the egg plasma membrane [goid 2079] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of complement activation [goid 45916] [evidence IDA]	Interacting selectively with any component or product of the complement cascade [goid 1848] [evidence IPI]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62663230-S	ILMN_277561	RGD1560576_PREDICTED	XM_001070261.1	XM_001070261.1		291002	109505478	XM_001070261.1	RGD1560576_predicted	XP_001070261.1	ILMN_1351480	0002640180	S	1355	CCCAGGAGGCCCAGGACAACTTCACAGGCTATGTGGATGAGCATGCCTCT				17p14	PREDICTED: Rattus norvegicus similar to PC-LKC gene product (predicted) (RGD1560576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663228-S	ILMN_277561	RGD1560576_PREDICTED	XM_001070261.1	XM_001070261.1		291002	109505478	XM_001070261.1	RGD1560576_predicted	XP_001070261.1	ILMN_1370627	0006900044	S	4104	GCTCTCAGGAAGGTCAGCAGGCACAAGTGGACAGCAGCAGAGGGAGCTGT				17p14	PREDICTED: Rattus norvegicus similar to PC-LKC gene product (predicted) (RGD1560576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40786478-S	ILMN_281861	ENTPD5	NM_199394.1	NM_199394.1		314312	40786478	NM_199394.1	Entpd5	NP_955426.1	ILMN_1373210	0000460093	S	1632	GGGGTTTGTAGATGAGTCCTGCCCTTGAGCCTAGCGATTTGGGCTTAGCT	6	-	108439944-108439993	6q31	Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 5 (Entpd5), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pcph	Pcph
Rattus norvegicus	RefSeq	GI_62654721-S	ILMN_280756	TMEM63B_PREDICTED	XM_001064906.1	XM_001064906.1		363197	109486726	XM_001064906.1	Tmem63b_predicted	XP_001064906.1	ILMN_1359576	0004810605	S	2594	CCTGATGGCCTCACGGACACAGACTTCCAGTCATGCGAGGACAGCCTCAT				9q12	PREDICTED: Rattus norvegicus transmembrane protein 63b (predicted), transcript variant 2 (Tmem63b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650616-S	ILMN_68636	LOC500642	XM_576017.1	XM_576017.1		500642	62650616	XM_576017.1	LOC500642	XP_576017.1	ILMN_1358364	0000510064	S	1372	TCAGTGTGAGTCATGGCACCCCTCCGCCCAAACCAATGCAAGCCACACCT				6q16	PREDICTED: Rattus norvegicus similar to histone deacetylase-related protein (LOC500642), mRNA.					
Rattus norvegicus	Unigene	Rn.4287	ILMN_161517	RN.4287	Rn.4287		Rn.4287		33165234	CF109910			ILMN_1530241	0003130273	S	819	TGGATAACAAAACTGGATAACTTAGGCTTGACTGGATTAAACTTTGTTCA					Shultzomica03161 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig2782 5', mRNA					
Rattus norvegicus	RefSeq	Rn.46167	ILMN_280026	ACAP2	NM_001034006.1	NM_001034006.1		619382	77404224	NM_001034006.1	Acap2	NP_001029178.1	ILMN_1530399	0001740121	S	2646	TGCAACCAGAAACTCACACATTTTTTACTACTTTAATTCCACTTAGTTTT	11	+	71523894-71523943	11q22	Rattus norvegicus ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 (Acap2), mRNA.		Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47087198-S	ILMN_271316	SLC7A10	NM_053726.2	NM_053726.2		114518	47087198	NM_053726.2	Slc7a10	NP_446178.2	ILMN_1367747	0005890088	S	1513	AGTCCATGACACGCTGGGGCCAGGAGCTGTGTTTCGTGGTTTACCCCCAG	1	+	87711229-87711278	1q21	Rattus norvegicus solute carrier family 7, (neutral amino acid transporter, y+ system) member 10 (Slc7a10), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence IEA]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence ISS]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence ISS]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence ISS]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence TAS]; The directed movement of D-alanine, the dextrorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 42941] [evidence IEA]; The directed movement of D-alanine, the dextrorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 42941] [evidence ISS]; The directed movement of D-serine, the dextrorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 42942] [evidence TAS]; The directed movement of D-serine, the dextrorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 42942] [evidence IEA]; The directed movement of D-serine, the dextrorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 42942] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of D-alanine, the dextrorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 42941] [evidence IEA]; The directed movement of D-serine, the dextrorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 42942] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence ISS]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence ISS]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence TAS]; Catalysis of the transfer of D-serine from one side of a membrane to the other. D-serine is the dextrorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 42945] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Asc-1	Asc-1
Rattus norvegicus	RefSeq	GI_18543360-S	ILMN_271598	ASZ1	NM_130750.1	NM_130750.1		170578	18543360	NM_130750.1	Asz1	NP_570106.1	ILMN_1373884	0007000725	S	1360	GACTCGGATTTTGAAGAGGTCAGCAGTTACAGTATGTGGATTCGGGCTGC	4	-	43715993-43716042	4q21	Rattus norvegicus ankyrin repeat, SAM and basic leucine zipper domain containing 1 (Asz1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			Gasz	Gasz
Rattus norvegicus	RefSeq	GI_62638210-A	ILMN_273911	MAP3K7IP2	NM_001012062.1	NM_001012062.1		308267	58865697	NM_001012062.1	Map3k7ip2	NP_001012062.1	ILMN_1376724	0001770070	S	4366	GTGGTACAGCCCACGTCTGACCTAGCGTGGGGAGAGTCATGGGTATTTAC	1	-	2568628-2568677	1p13	Rattus norvegicus mitogen-activated protein kinase kinase kinase 7 interacting protein 2 (Map3k7ip2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11612662-S	ILMN_294339	FXYD7	NM_022008.1	NM_022008.1		63848	11612662	NM_022008.1	Fxyd7	NP_071291.1	ILMN_1356198	0002630594	S	270	AACATGCAAATCCTGTAAGTCGGAACTGCCCTCCTCAGCCCCTGGAGGTG	1	-	86086418-86086430:86088231-86088267	1q21	Rattus norvegicus FXYD domain-containing ion transport regulator 7 (Fxyd7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 43269] [evidence IDA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with an ATPase, any enzyme that catalyzes the hydrolysis of ATP [goid 51117] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62718662-S	ILMN_290151	LOC689679	XM_001071625.1	XM_001071625.1		689679	109513830	XM_001071625.1	LOC689679	XP_001071625.1	ILMN_1353195	0003130138	S	900	TAGACCAGGACAAGATCTCCCTTGGTGAGAAGTGGTACAGGAGGAGAACA	Un|NW_047936.1	+	973343-973392		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC689679), mRNA.					
Rattus norvegicus	RefSeq	GI_27694432-S	ILMN_279480	RPL23A	XM_001060002.1	XM_001060002.1		360572	109488565	XM_001060002.1	Rpl23a	XP_001060002.1	ILMN_1369884	0004590541	S	418	GGCCTGACGGAGAGAAGAAGGCATATGTTCGCTTGGCTCCTGATTATGAT	10	+	64454107-64454107:64454325-64454373	10q25	PREDICTED: Rattus norvegicus ribosomal protein L23a, transcript variant 2 (Rpl23a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660787-S	ILMN_293492	LOC684355	XR_008681.1	XR_008681.1		684355	109500980	XR_008681.1	LOC684355		ILMN_1354703	0005340021	S	909	GCCTGCCGTGTCATGCTGGCTTCAGTTCCTGTGGCTCTTGGGTGAAAGTT					PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) (CAB) (p27(BBP)) (B(2)GCN homolog) (LOC684355), mRNA.					
Rattus norvegicus	RefSeq	GI_62655659-S	ILMN_280448	RGD1311433_PREDICTED	XM_001078804.1	XM_001078804.1		287054	109489679	XM_001078804.1	RGD1311433_predicted	XP_001078804.1	ILMN_1351167	0005050162	S	1259	AGCAGCTGGAGCTCTGGAAGATTGTGGTCGAGCCAGCAGCATGAGTCACC				10q12	PREDICTED: Rattus norvegicus similar to cDNA sequence BC024814 (predicted) (RGD1311433_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643302-S	ILMN_64257	PHC3_PREDICTED	XM_226976.4	XM_226976.4		310258	109464679	XM_226976.4	Phc3_predicted	XP_226976.3	ILMN_1372974	0001990133	S	3124	GCCACGGCCAGTGCCGACATTTCTCTTCAGATGCCCTAACTCATCTTATG	2	+	116894965-116895014	2q24	PREDICTED: Rattus norvegicus polyhomeotic like 3 (Drosophila) (predicted) (Phc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638837	ILMN_286612	USP29_PREDICTED	XM_001068006.1	XM_001068006.1		361495	109461083	XM_001068006.1	Usp29_predicted	XP_001068006.1	ILMN_1650518	0002370279	S	2845	CCTGGCTCCTTTACAGTGATGTCCAAGTGTTCGAGAATCCAGATCCCTCC				1q12	PREDICTED: Rattus norvegicus ubiquitin specific protease 29 (predicted) (Usp29_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394431-S	ILMN_264127	PRDX2	NM_017169.1	NM_017169.1		29338	8394431	NM_017169.1	Prdx2	NP_058865.1	ILMN_1364158	0006840750	S	679	ATCTCACCTGCGCCCTTACCTGGATGTCCTGTGCTGGCCCAGAAAACGCT	19	-	24836333-24836382	19q11	Rattus norvegicus peroxiredoxin 2 (Prdx2), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; A phase of elevated metabolic activity, during which oxygen consumption increases following a stimulus during an acute inflammatory response; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals, resulting in an increase in their intracellular or extracellular levels [goid 2536] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions involving hydrogen peroxide [goid 10310] [evidence ISS]; Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 10671] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling in response to detection of lipopolysaccharide [goid 31665] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB [goid 32088] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 42743] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell differentiation [goid 45581] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells [goid 48872] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: thioredoxin + H2O2 = thioredoxin disulfide + H2O [goid 8379] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IEA]	Tdpx1	Tdpx1
Rattus norvegicus	RefSeq	GI_12018235-S	ILMN_302335	TXNRD2	NM_022584.1	NM_022584.1		50551	12018235	NM_022584.1	Txnrd2	NP_072106.1	ILMN_1374002	0001660133	S	1668	CTCTCAGACACCTGGACCTAGCTATTGTCATGGGAGCCACTGTGCCAGCA	11	-	84514521-84514570	11q23	Rattus norvegicus thioredoxin reductase 2 (Txnrd2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 9988709] [evidence IDA]	The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion [goid 10269] [evidence IDA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen radical stimulus. An oxygen radical is any oxygen species that carries a free electron; examples include hydroxyl radicals and the superoxide anion [goid 305] [pmid 9988709] [evidence TAS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence TAS]; Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [pmid 9988709] [evidence IDA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a disulfide group [goid 16654] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [pmid 9988709] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	Trxrd2; MGC93435	Trxrd2; MGC93435
Rattus norvegicus	RefSeq	GI_8394340-S	ILMN_274748	SFTPC	NM_017342.1	NM_017342.1		50683	8394340	NM_017342.1	Sftpc	NP_059038.1	ILMN_1362125	0006450301	S	587	ACTATATCTAGCACCCCTCAGGGTCGAGAAACCGCTGCGGGACAGGAAAG	15	-	50923250-50923280:50923499-50923508:50923509-50923517	15p11	Rattus norvegicus surfactant associated protein C (Sftpc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; Any process that modulates the surface tension of a liquid. Surface tension is the property that makes a liquid behave as if it had an elastic skin on its surface at the interface with a gas or an immiscible liquid [goid 50828] [evidence IEA]; Any process that modulates the surface tension of a liquid. Surface tension is the property that makes a liquid behave as if it had an elastic skin on its surface at the interface with a gas or an immiscible liquid [goid 50828] [evidence TAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	SP-C	SP-C
Rattus norvegicus	RefSeq	GI_54262182-S	ILMN_295208	MGST1	NM_134349.2	NM_134349.2		171341	54262182	NM_134349.2	Mgst1	NP_599176.1	ILMN_1370971	0005550408	S	685	CACAGGCTCTACCCTTTTGTACCTGGGTTAGACATTTAACATGACCGGCC	4	+	175263669-175263718	4q44	Rattus norvegicus microsomal glutathione S-transferase 1 (Mgst1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence ISS]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC72699	MGC72699
Rattus norvegicus	RefSeq	GI_62662698-A	ILMN_264427	PDGFRL	NM_001011921.1	NM_001011921.1		290771	58865411	NM_001011921.1	Pdgfrl	NP_001011921.1	ILMN_1376295	0002970093	S	1232	GGGACGCCCATCTGCACACACAGCTTCGAGGTGCTTTACAGGAGGCCCAG	16	-	54664417-54664466	16q12.1	Rattus norvegicus platelet-derived growth factor receptor-like (Pdgfrl), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62667271-S	ILMN_53346	RGD1561019_PREDICTED	XM_228821.3	XM_228821.3		317405	109511112	XM_228821.3	RGD1561019_predicted	XP_228821.1	ILMN_1352604	0002650450	S	2493	GCCCGAGGAGGGACAGTAAAGTTAGTGTGATTAACCACCTGCCACTCATC	X	+	123120989-123121007:123121008-123121038	Xq35	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1561019_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538861-S	ILMN_269715	SSR3	NM_031120.2	NM_031120.2		81784	40538861	NM_031120.2	Ssr3	NP_112382.2	ILMN_1370530	0002690064	S	2585	GCACATAGGATTACGAAGTTCAGTGAGACATAACAGTGATCCCGTGGCAG				2q31	Rattus norvegicus signal sequence receptor, gamma (Ssr3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A translocation complex that constitutes the specific site of protein translocation across the endoplasmic reticulum, which involves the signal recognition particle receptor. Composed of a heterotetramer of alpha, beta, gamma and delta subunits (translocon-associated proteins or TRAPs). In yeast it is a heterotrimeric complex consisting of Sec61p, Sbh1p, and Sss1p. The Sec61 complex functions in cotranslational and posttranslational translocation events [goid 5784] [evidence NAS]; A translocation complex that constitutes the specific site of protein translocation across the endoplasmic reticulum, which involves the signal recognition particle receptor. Composed of a heterotetramer of alpha, beta, gamma and delta subunits (translocon-associated proteins or TRAPs). In yeast it is a heterotrimeric complex consisting of Sec61p, Sbh1p, and Sss1p. The Sec61 complex functions in cotranslational and posttranslational translocation events [goid 5784] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IEA]	The targeting of proteins to a membrane that occurs during translation. The transport of most secretory proteins, particularly those with more than 100 amino acids, into the endoplasmic reticulum lumen occurs in this manner, as does the import of some proteins into mitochondria [goid 6613] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645327-S	ILMN_53380	LOC499819	XM_575158.1	XM_575158.1		499819	62645327	XM_575158.1	LOC499819	XP_575158.1	ILMN_1371897	0002690112	S	563	CACTCCTCTAAAAGGGGAACAAGAATAACCTTGGCAGGGAAGAGAGAGGC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499819), mRNA.					
Rattus norvegicus	RefSeq	GI_62643446-S	ILMN_263429	RGD1309403_PREDICTED	XM_001057453.1	XM_001057453.1		310417	109466644	XM_001057453.1	RGD1309403_predicted	XP_001057453.1	ILMN_1351433	0006420670	S	3037	CCAGTCAGCGTTGTTGCAGCAGGTCCACTCAGCATCGGCTCTGGAGAACT				2q26	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12661 (predicted) (RGD1309403_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27662947-S	ILMN_270442	RBX1	NM_001034135.1	NM_001034135.1		300084	77628003	NM_001034135.1	Rbx1	NP_001029307.1	ILMN_2040519	0003990689	S	278	GCAGGTGTGCCCCTTGGACAACAGAGAGTGGGAGTTCCAAAAGTATGGGC	7	+	119801872-119801913:119803090-119803097	7q34	Rattus norvegicus ring-box 1 (Rbx1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1 [goid 30891] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence ISS]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC116275	MGC116275
Rattus norvegicus	RefSeq	GI_62664803-S	ILMN_264354	RGD1565763_PREDICTED	XM_001060951.1	XM_001060951.1		291847	109508403	XM_001060951.1	RGD1565763_predicted	XP_001060951.1	ILMN_1364580	0003990181	S	1027	GGGGACCTGGAGAAGACCATCAAGATGTGGGAGAGGAAGGTGGAGATCGC				19p13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4933409I22 (predicted) (RGD1565763_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651412-S	ILMN_62682	LOC500748	XM_576127.1	XM_576127.1		500748	62651412	XM_576127.1	LOC500748	XP_576127.1	ILMN_1352164	0000670301	S	2972	CCAGAGATGCCTAAAGTCTCACTTACATGGGGAGTCAGAGCCCCGTAGTC					PREDICTED: Rattus norvegicus similar to Rap guanine nucleotide exchange factor 5 (Guanine nucleotide exchange factor for Rap1) (M-Ras-regulated Rap GEF) (MR-GEF) (LOC500748), mRNA.					
Rattus norvegicus	RefSeq	GI_27545433-S	ILMN_264174	SLCO6C1	NM_173338.1	NM_173338.1		287006	27545433	NM_173338.1	Slco6c1	NP_775460.1	ILMN_1361509	0003710538	S	1840	GGCCAGGGCGTGACAGTTGCAATTACGAAATTTACTGCATCCGTCCCTGA	9	-	96396459-96396472:96398642-96398677	9q36	Rattus norvegicus solute carrier organic anion transporter family, member 6c1 (Slco6c1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence IMP]	GST-2	GST-2
Rattus norvegicus	RefSeq	GI_62648944-S	ILMN_277004	RGD1310012_PREDICTED	XM_001070176.1	XM_001070176.1		313490	109476410	XM_001070176.1	RGD1310012_predicted	XP_001070176.1	ILMN_1359724	0006220524	S	1866	TGGACTTTGGAACCTGCTTGGACCCAGTCTCTTCGCCCTCGGGATCTTGG				5q22	PREDICTED: Rattus norvegicus similar to NAG-5 protein (predicted) (RGD1310012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662285-S	ILMN_60374	RGD1305574_PREDICTED	XM_341388.2	XM_341388.2		361102	62662285	XM_341388.2	RGD1305574_predicted	XP_341389.2	ILMN_1359578	0007040020	S	4154	TGCTGCCTACTTTGGGCAGAAGGACTCCGTGTGTGGTAGGTTTGGAGTGG				16p16	PREDICTED: Rattus norvegicus similar to polymerase (RNA) III (DNA directed) (155kD) (predicted) (RGD1305574_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424301-S	ILMN_289023	UGCGL1	NM_133596.1	NM_133596.1		171129	19424301	NM_133596.1	Ugcgl1	NP_598280.1	ILMN_1364029	0003140347	S	4849	GGGACTCTCTTCTCGCCAGAGGGAACTGAAAGAAGCCCAGTCTTCGGTGC	9	-	35055194-35055243	9q21	Rattus norvegicus UDP-glucose ceramide glucosyltransferase-like 1 (Ugcgl1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IDA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis [goid 51084] [evidence TAS]	Catalysis of the addition of UDP-glucose on to asparagine-linked (N-linked) oligosaccharides of the form Man7-9GlcNAc2 on incorrectly folded glycoproteins [goid 3980] [evidence IDA]; Catalysis of the addition of UDP-glucose on to asparagine-linked (N-linked) oligosaccharides of the form Man7-9GlcNAc2 on incorrectly folded glycoproteins [goid 3980] [evidence TAS]; Catalysis of the addition of UDP-glucose on to asparagine-linked (N-linked) oligosaccharides of the form Man7-9GlcNAc2 on incorrectly folded glycoproteins [goid 3980] [evidence ISS]; Catalysis of the addition of UDP-glucose on to asparagine-linked (N-linked) oligosaccharides of the form Man7-9GlcNAc2 on incorrectly folded glycoproteins [goid 3980] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IDA]	Uggt	Uggt
Rattus norvegicus	RefSeq	GI_62662183-S	ILMN_54844	STAB1_PREDICTED	XM_214279.3	XM_214279.3		290559	62662183	XM_214279.3	Stab1_predicted	XP_214279.3	ILMN_1357673	0001770280	S	7776	TTGGGGGTTGTGATAACTTGTGGAACGCTGCTGGGGCTGGTAGCTGGAGC					PREDICTED: Rattus norvegicus stabilin 1 (predicted) (Stab1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662209-S	ILMN_294285	ERCC6_PREDICTED	XM_001061229.1	XM_001061229.1		306274	109503785	XM_001061229.1	Ercc6_predicted	XP_001061229.1	ILMN_1372042	0003190168	S	4203	TCCCTGCAGCACAGAGCACGACGCCCTTCTGGTGGACATGAGGAACTTCA				16p16	PREDICTED: Rattus norvegicus excision repair cross-complementing rodent repair deficiency, complementation group 6 (predicted) (Ercc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643632-S	ILMN_57199	LOC502529	XM_578015.1	XM_578015.1		502529	62643632	XM_578015.1	LOC502529	XP_578015.1	ILMN_1371899	0005290025	S	1879	GGAATCCGACTTGTAAGACCTTATTTGGGAGGGATCTCTCAAAGAAGGAC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC502529), mRNA.					
Rattus norvegicus	RefSeq	GI_62648795-S	ILMN_64180	LOC500438	XM_575800.1	XM_575800.1		500438	62648795	XM_575800.1	LOC500438	XP_575800.1	ILMN_1356222	0001400079	S	497	GGTGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCTTTATTGGTGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC500438), mRNA.					
Rattus norvegicus	RefSeq	GI_62078830-S	ILMN_270923	SEL1L2	NM_001014049.1	NM_001014049.1		311470	62078830	NM_001014049.1	Sel1l2	NP_001014071.1	ILMN_1369839	0000060100	S	1920	CATGGCCGCTCAGACAAGCCCAGATGCTCACATACCCGTGTTCTTTGCCC	3	-	128433694-128433701:128434416-128434457	3q41	Rattus norvegicus sel-1 suppressor of lin-12-like 2 (C. elegans) (Sel1l2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665437-S	ILMN_275438	LOC364718	XR_009580.1	XR_009580.1		364718	109505834	XR_009580.1	LOC364718		ILMN_1373096	0002320594	S	1992	TGGCAGACTGGGTGGGGCTGGAAGAGTGGTCACAGTCCAGGACTTGCTAA				17q11	PREDICTED: Rattus norvegicus similar to TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor (LOC364718), mRNA.					
Rattus norvegicus	RefSeq	GI_62651890-S	ILMN_64815	RGD1309995_PREDICTED	XM_235003.4	XM_235003.4		314690	109480363	XM_235003.4	RGD1309995_predicted	XP_235003.3	ILMN_1359058	0000730411	S	4768	GGCTGGATGCAGTGCTTAGGTCAGGGTAACTGTCTCAGCCCAAGCTAAAC	7	-	22332366-22332415	7q13	PREDICTED: Rattus norvegicus similar to CG13957-PA (predicted) (RGD1309995_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18158444-S	ILMN_271862	NR2F2	NM_080778.1	NM_080778.1		113984	18158444	NM_080778.1	Nr2f2	NP_542956.1	ILMN_1366431	0001770025	S	1223	AGAGTACGTTAGGAGCCAGTACCCCAACCAGCCAACACGGTTCGGAAAGC	1	-	125281272-125281321	1q31	Rattus norvegicus nuclear receptor subfamily 2, group F, member 2 (Nr2f2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur [goid 9956] [evidence ISS]; The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur [goid 9956] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEA]; The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 60173] [evidence ISS]; The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 60173] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tfcoup2	Tfcoup2
Rattus norvegicus	RefSeq	GI_62666844-S	ILMN_52243	LOC497845	XM_579490.1	XM_579490.1		497845	62666844	XM_579490.1	LOC497845	XP_579490.1	ILMN_1362325	0004210551	S	2602	AATTCAAAAGCTAAGTAGAAAAATATGTGTGAATAAAGCCAATAATATCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_024381 (LOC497845), mRNA.					
Rattus norvegicus	RefSeq	GI_62646432-S	ILMN_282141	ZFP217_PREDICTED	XM_001074273.1	XM_001074273.1		311764	109471395	XM_001074273.1	Zfp217_predicted	XP_001074273.1	ILMN_1350949	0003390161	S	3067	GGCAGAAGGGGCTTTGAGCTCCCCAAGTACCATGTGGTCAGGAGCATCAC				3q42	PREDICTED: Rattus norvegicus zinc finger protein 217 (predicted) (Zfp217_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643295-S	ILMN_63900	LOC361923	XM_342222.2	XM_342222.2		361923	62643295	XM_342222.2	LOC361923	XP_342223.2	ILMN_1368053	0002450685	S	153	ATAAAAGCGTGCGTACAGCGGAGGCCCGTCCTCTTCTCAAGGCTGCTGCT				2q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110001N18 (predicted) (LOC361923), mRNA.					
Rattus norvegicus	RefSeq	GI_62652475-S	ILMN_289217	NSMCE2	NM_001024876.1	NM_001024876.1		299957	67846029	NM_001024876.1	Nsmce2	NP_001020047.1	ILMN_1352433	0003130538	S	885	AGCGTTCACAGCAATAGGCCCGGCAAGCTCTGCAGTGACCCTCAAGGCTA	7	+	96393433-96393482	7q33	Rattus norvegicus non-SMC element 2, MMS21 homolog (S. cerevisiae) (Nsmce2), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114542	MGC114542
Rattus norvegicus	RefSeq	GI_62665163-S	ILMN_262899	AGRP	XM_001075738.1	XM_001075738.1		25582	109508789	XM_001075738.1	Agrp	XP_001075738.1	ILMN_1360181	0006760088	S	599	CAACGGATGTTGGGCAAAGGCAGGGGACGCGAATAAACGATGGGACTAAC				19q11	PREDICTED: Rattus norvegicus agouti related protein homolog (mouse) (Agrp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence TAS]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IEA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658423-S	ILMN_49534	LOC498138	XM_573349.1	XM_573349.1		498138	62658423	XM_573349.1	LOC498138	XP_573349.1	ILMN_1368861	0004810273	S	3284	GTTCTTCATAAGCAGTCTCTCGTGAGGGATGTGGCTGGGAGCTGGGAGGC					PREDICTED: Rattus norvegicus similar to deubiquitinating enzyme UBH1 (LOC498138), mRNA.					
Rattus norvegicus	RefSeq	GI_62653616-S	ILMN_62067	LOC500990	XM_576403.1	XM_576403.1		500990	62653616	XM_576403.1	LOC500990	XP_576403.1	ILMN_1355626	0006020458	S	871	CTGTGACGATGGGCTAGGAATTGAACGTGCTGGCCTCCGCCTGTGTCCAA				8q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931429L15 (LOC500990), mRNA.					
Rattus norvegicus	RefSeq	GI_57113790-S	ILMN_267172	V1RD7	NM_001008919.1	NM_001008919.1		494268	57113790	NM_001008919.1	V1rd7	NP_001008919.1	ILMN_1365653	0005050605	S	790	GTGGACTCTCGGCTCTGGTTAAGGCGTGTCAGAGAAATTTTGGCTGTAAG	1	-	67309612-67309661	1q12	Rattus norvegicus vomeronasal 1 receptor, D7 (V1rd7), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.106355	ILMN_272412	LOC679221	XM_001054963.1	XM_001054963.1		679221	109507029	XM_001054963.1	LOC679221	XP_001054963.1	ILMN_1530524	0004850270	S	2230	ATTCATAAACGGGAAACATTAGTGAATTGAAAGCATTCCTTGTTTTTAAC					PREDICTED: Rattus norvegicus similar to Microtubule-associated protein RP/EB family member 2 (APC-binding protein EB2) (End-binding protein 2) (EB2), transcript variant 2 (LOC679221), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660640-S	ILMN_65091	RGD1566416_PREDICTED	XM_223532.4	XM_223532.4		305448	109499903	XM_223532.4	RGD1566416_predicted	XP_223532.4	ILMN_1371729	0004540072	S	1699	CACGCGCAGAACCGGGAGGAACGATTGCCAGAGTTGGAGCAGCGGAAGAA	14	-	81308694-81308743	14q21	PREDICTED: Rattus norvegicus similar to hypothetical protein A930013K19 (predicted) (RGD1566416_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576376-S	ILMN_296699	OLR1553	NM_001000051.1	NM_001000051.1		288192	47576376	NM_001000051.1	Olr1553	NP_001000051.1	ILMN_1356464	0002640369	S	686	AGTCTGACAAGGGCATAAGGAAAGCTTTCTCTACCTGTGGAGCCCACCTT	11	-	42262181-42262230	11q12	Rattus norvegicus olfactory receptor 1553 (Olr1553), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1553	Olr1553
Rattus norvegicus	RefSeq	GI_62667102-S	ILMN_278386	RGD1562655_PREDICTED	XR_007646.1	XR_007646.1		317227	109512171	XR_007646.1	RGD1562655_predicted		ILMN_1371053	0000060348	S	3370	ACCAGTCACCTGAATGCTGGGGAACAGGAAGGTCTTGGCATGTGTTCCAG				Xq31	PREDICTED: Rattus norvegicus similar to toll-like receptor 13 (predicted) (RGD1562655_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662237-S	ILMN_57417	RGD1559933_PREDICTED	XM_579836.2	XM_579836.2		498584	109503078	XM_579836.2	RGD1559933_predicted	XP_579836.2	ILMN_1371520	0000730541	S	1194	TACCAATGTGGCACTCGCAAAGGAACCCTGCATTCCCAAGTTCAGCCTGC	16	-	9615088-9615137	16p16	PREDICTED: Rattus norvegicus RGD1559933 (predicted) (RGD1559933_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656053-S	ILMN_278997	TCF7_PREDICTED	XM_001073458.1	XM_001073458.1		363595	109490688	XM_001073458.1	Tcf7_predicted	XP_001073458.1	ILMN_1349990	0004060465	S	2411	AGCTCCTGGGCAGCTGTGAGAGGGCAAATCCCAACAGCCAGAACTCATCC				10q22	PREDICTED: Rattus norvegicus transcription factor 7, T-cell specific (predicted) (Tcf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657735-S	ILMN_65173	LOC501771	XM_577170.1	XM_577170.1		501771	62657735	XM_577170.1	LOC501771	XP_577170.1	ILMN_1371669	0003170064	S	161	CTTCCTGCACTGGGCAGCAGAGGCTAGCCCACAAGGAGGAGACTTACTGC					PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein S6 (LOC501771), mRNA.					
Rattus norvegicus	RefSeq	GI_62646192-S	ILMN_293573	RGD1564796_PREDICTED	XM_001061419.1	XM_001061419.1		366229	109471043	XM_001061419.1	RGD1564796_predicted	XP_001061419.1	ILMN_1375159	0001740750	S	811	CGCCAGTGCGACAAGAGCTTCGCGCTCAAGTCCTACCTCCACAAGCACTG				3q41	PREDICTED: Rattus norvegicus similar to Transcriptional repressor scratch 2 (Scratch homolog 2 zinc finger protein) (predicted) (RGD1564796_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47825358-S	ILMN_66563	SRA1	NM_183329.2	NM_183329.2		252891	47825358	NM_183329.2	Sra1	NP_899158.2	ILMN_1360145	0001410673	S	362	CCTCTGGAACAGGCATTGGAGGATTGCCGTGGTCACACGAAGCAGGTATG				18p11	Rattus norvegicus steroid receptor RNA activator 1 (Sra1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence ISS]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence ISS]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA];  [goid 30374] [evidence ISS];  [goid 30374] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA];  [goid 30374] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12350225] [evidence IPI];  [goid 30374] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653042-S	ILMN_54103	C1QL4_PREDICTED	XM_235645.4	XM_235645.4		300220	109481291	XM_235645.4	C1ql4_predicted	XP_235645.4	ILMN_1360738	0000840408	S	814	GGCTATGTACCCCGAATTGCCTTCTATGCGGGCCTAAGGCGGCCTCATGA	7	-	137864019-137864068	7q36	PREDICTED: Rattus norvegicus complement component 1, q subcomponent-like 4 (predicted) (C1ql4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653262-S	ILMN_263489	SLC36A4_PREDICTED	XM_001074651.1	XM_001074651.1		315439	109484260	XM_001074651.1	Slc36a4_predicted	XP_001074651.1	ILMN_1366918	0002030722	S	1629	AGCGTTCACTGGGTTCGTGGGCTTCTTGTTGGGCACGTATGTCACCGTCG				8q12	PREDICTED: Rattus norvegicus solute carrier family 36 (proton/amino acid symporter), member 4 (predicted) (Slc36a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54633339-S	ILMN_299174	PIGS	NM_001006602.1	NM_001006602.1		303277	54633339	NM_001006602.1	Pigs	NP_001006602.1	ILMN_1367675	0000430064	S	2208	TCCGGCTTCTGCACTTAACGGACTGGAGAGTGCTTGATAAGCTGCTCCTC	10	-	64292287-64292336	10q25	Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis, class S (Pigs), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain [goid 16255] [evidence ISS]	Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor [goid 3923] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644386-S	ILMN_50608	RGD1561875_PREDICTED	XM_212946.4	XM_212946.4		295439	109465585	XM_212946.4	RGD1561875_predicted	XP_212946.1	ILMN_1357293	0003120520	S	488	ATGGAAAGGAGCCTGAGCTGCTGGAGCGCAGTCCATACGAATTCATGGCC	2	-	228247138-228247187	2q43	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561875_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666914-S	ILMN_291276	PDK3_MAPPED	XM_001056460.1	XM_001056460.1		296849	109511862	XM_001056460.1	Pdk3_mapped	XP_001056460.1	ILMN_1365682	0004480398	S	1371	CACTCCTGAAGCTGATGACTGGAGCAATCCCAGCAGCGAACCAAGGGATG				Xq22	PREDICTED: Rattus norvegicus pyruvate dehydrogenase kinase, isoenzyme 3 (mapped) (Pdk3_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62643562-S	ILMN_275502	PPM1L_PREDICTED	XM_001066833.1	XM_001066833.1		310506	109466788	XM_001066833.1	Ppm1l_predicted	XP_001066833.1	ILMN_1366202	0005080594	S	1087	ATCTCAACGTGGTCATCCCAGACCCAGACATCTTGACCTTTGACCTGGAC				2q32	PREDICTED: Rattus norvegicus protein phosphatase 1 (formerly 2C)-like (predicted) (Ppm1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718368-S	ILMN_294468	LOC690874	XM_001075967.1	XM_001075967.1		690874	109513560	XM_001075967.1	LOC690874	XP_001075967.1	ILMN_1368434	0003870750	S	249	TCGCCTGAGGTTTCTGACGGAGAGATCCATGAAGAAGAGGTATGAATCGC	Un|NW_047883.1	+	2536288-2536337		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC690874), mRNA.					
Rattus norvegicus	RefSeq	GI_6981345-S	ILMN_273179	PDE4A	NM_013101.1	NM_013101.1		25638	6981345	NM_013101.1	Pde4a	NP_037233.1	ILMN_1370169	0005340639	S	2778	CTTGTCCACAGGGCCTTTTTGTTGAGGTGGGGTATGGGGAGCCAGGAACT	8	+	20241477-20241526	8q13	Rattus norvegicus phosphodiesterase 4A, cAMP specific (Pde4a), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	PHOSA	PHOSA
Rattus norvegicus	RefSeq	GI_62657513-S	ILMN_69441	LOC360684	XM_340956.2	XM_340956.2		360684	62657513	XM_340956.2	LOC360684	XP_340957.2	ILMN_1361033	0006370435	S	794	CTCCAAGGACTGACTAGCCAACCAGGTACAGCTAAACATCCTGTGCGATC					PREDICTED: Rattus norvegicus similar to Eyes absent homolog 4 (LOC360684), mRNA.					
Rattus norvegicus	RefSeq	GI_11968119-S	ILMN_66915	ARAF	NM_022532.2	NM_022532.2		64363	75906105	NM_022532.2	Araf	NP_071977.1	ILMN_1352852	0003780093	S	2020	TACTGCCTCAGGATTCCCTATCCCACACCCTGGGAAATTTGGGGGACTCC	X	-	12557167-12557216	Xq12	Rattus norvegicus v-raf murine sarcoma 3611 viral oncogene homolog (Araf), transcript variant 1, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence TAS]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IDA];  [goid 5057] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA];  [goid 5057] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Araf1	Araf1
Rattus norvegicus	RefSeq	GI_62665987-S	ILMN_273050	RSHL3_PREDICTED	XM_001057335.1	XM_001057335.1		309767	109510128	XM_001057335.1	Rshl3_predicted	XP_001057335.1	ILMN_1371366	0001400026	S	1965	CACACCTCCAGGCCCACCACCAGTTTATCAAGAATATCCCAGTGGACCAG				20q11	PREDICTED: Rattus norvegicus radial spokehead-like 3 (predicted) (Rshl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476342-S	ILMN_263631	RPS23	NM_078617.2	NM_078617.2		124323	42476342	NM_078617.2	Rps23	NP_511172.1	ILMN_1369998	0003870181	S	162	CGTTTGGGGGTGCCTCTCACGCAAAGGGAATTGTACTGGAAAAAGTAGGG	2	+	21046868-21046909:21047457-21047464	2q12	Rattus norvegicus ribosomal protein S23 (Rps23), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence NAS]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Any substance involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome [goid 45182] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62648997-S	ILMN_285225	RGD1564809_PREDICTED	XR_007574.1	XR_007574.1		313208	109476502	XR_007574.1	RGD1564809_predicted		ILMN_1362635	0001570148	S	1274	CTAGTTGGTGCATCCACGTCAACAGCTGGTTACAGAACACGTTTGCAGCC				5q24	PREDICTED: Rattus norvegicus similar to fibronectin type 3 and SPRY domain-containing protein (predicted) (RGD1564809_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660333	ILMN_63487	LOC305284	XM_223330.3	XM_223330.3		305284	62660333	XM_223330.3	LOC305284	XP_223330.3	ILMN_1650036	0001410095	S	37	GATCATGTAGGGCCTGAACTAGAACTGGAGCAGGCTTGGGGACACAGCCA				14p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730434I03 gene (LOC305284), mRNA.					
Rattus norvegicus	RefSeq	GI_62718498-S	ILMN_280177	LOC691045	XR_007009.1	XR_007009.1		691045	109513007	XR_007009.1	LOC691045		ILMN_1353456	0004230500	S	337	GGCGGTCAATCTTCTTAGATTCGCAGTATCTCCTGAGAAGCCGGTGCAGG	Un|NW_047853.1	+	1168112-1168161		PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC691045), mRNA.					
Rattus norvegicus	RefSeq	GI_62642536-S	ILMN_69146	HSPA12A_PREDICTED	XM_217648.4	XM_217648.4		307997	109460305	XM_217648.4	Hspa12a_predicted	XP_217648.3	ILMN_1372857	0005290348	S	2036	AGCGGTTCCCGCCCGCAGAGAAATCCAGACCCTTATGCAGTTTGGGGACA	1	-	265308818-265308867	1q55	PREDICTED: Rattus norvegicus heat shock 70kDa protein 12A (predicted) (Hspa12a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653054-S	ILMN_54724	TEGT	XM_576343.2	XM_576343.2		24822	109481300	XM_576343.2	Tegt	XP_576343.1	ILMN_1366545	0002940619	S	988	CAAGCCCCTGACAGCCCGTTACCAGGAGGATGGTGGTTTTGACTTTCTTC	7	+	138155179-138155228	7q36	PREDICTED: Rattus norvegicus testis enhanced gene transcript (Tegt), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_16758615-S	ILMN_278251	IPO13	NM_053778.1	NM_053778.1		116458	16758615	NM_053778.1	Ipo13	NP_446230.1	ILMN_1369868	0006020338	S	3373	GGACACCTTCAGCCAGCAGATACTTCGTGAGCGAGTGAACAAGAGACGGG	5	-	138360079-138360100:138360190-138360217	5q36	Rattus norvegicus importin 13 (Ipo13), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex which usually consists of three components, e.g. in Xenopus, the importin alpha and beta-subunits and any protein which has a nuclear localization sequence (NLS). The complex acts to import proteins with an NLS into the nucleus through a nuclear pore [goid 42564] [evidence NAS]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	Lgl2; Imp13	Lgl2; Imp13
Rattus norvegicus	RefSeq	GI_62644135-S	ILMN_282291	LRIG2_PREDICTED	XM_001065921.1	XM_001065921.1		310753	109467332	XM_001065921.1	Lrig2_predicted	XP_001065921.1	ILMN_1351632	0002340605	S	3529	AGCCTGTCCTTGAGTCACCACAGCTGGCAGAGAGGGATCCAAACTGTTCT				2q34	PREDICTED: Rattus norvegicus leucine-rich repeats and immunoglobulin-like domains 2 (predicted) (Lrig2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648142-S	ILMN_54271	LOC297591	XM_216272.2	XM_216272.2		297591	62648142	XM_216272.2	LOC297591	XP_216272.1	ILMN_1369810	0000630433	S	370	GCGTATGGACGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGC					PREDICTED: Rattus norvegicus similar to C10 (predicted) (LOC297591), mRNA.					
Rattus norvegicus	RefSeq	GI_62661366-S	ILMN_273918	RNASE1L2	NM_001025116.1	NM_001025116.1		305844	68341974	NM_001025116.1	Rnase1l2	NP_001020287.1	ILMN_1353150	0000540600	S	164	ACGAGATGATGAAGAGCAGGGGGATGACCTCGGGGTGGTGCAAGTCCATG	15	+	27184802-27184851	15p14	Rattus norvegicus ribonuclease, RNase A family, 1-like 2 (pancreatic) (Rnase1l2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664936-S	ILMN_279420	SNX20	NM_001024999.1	NM_001024999.1		307742	68163432	NM_001024999.1	Snx20	NP_001020170.1	ILMN_1356256	0004010070	S	997	CACACACAGGGGCGCCACCCTGAAGGAGCTCACCGTGCGGGAGTATCTGT	19	+	19725773-19725822	19p11	Rattus norvegicus sorting nexin 20 (Snx20), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	MGC108869	MGC108869
Rattus norvegicus	RefSeq	GI_62658788-S	ILMN_268823	RABGEF1_PREDICTED	XM_001072217.1	XM_001072217.1		360797	109497102	XM_001072217.1	Rabgef1_predicted	XP_001072217.1	ILMN_1349016	0004920348	S	2496	TCCTGTCCAGCCCCCCATGTGAAAAGCCAGACATGGTGACGCACAGTTGG				12q13	PREDICTED: Rattus norvegicus RAB guanine nucleotide exchange factor (GEF) 1 (predicted) (Rabgef1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664142-S	ILMN_275443	RGD1564026_PREDICTED	XR_007667.1	XR_007667.1		291715	109507065	XR_007667.1	RGD1564026_predicted		ILMN_1367580	0006370541	S	695	CCCAATGTCATGGGTGGGTCCTAGGAGAGTATGGTGACTGCAGTGTGCCT				18p12	PREDICTED: Rattus norvegicus similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) (predicted) (RGD1564026_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646625-S	ILMN_275960	GALNTL5	NM_001025148.1	NM_001025148.1		499968	68342010	NM_001025148.1	Galntl5	NP_001020319.1	ILMN_1355988	0004050136	S	1196	CCAGAGTGCCTTGTCAAAGAATTTACTTCGAGTGGTTCACGTCTGGCTGG	4	-	5277831-5277880	4q11	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 (Galntl5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Galnt15	Galnt15
Rattus norvegicus	RefSeq	GI_62667017	ILMN_56894	RGD1563355_PREDICTED	XM_234140.4	XM_234140.4		314119	109510845	XM_234140.4	RGD1563355_predicted	XP_234140.3	ILMN_1650653	0005900026	S	1556	ATGTCTCTGCTGGGAATGTGGGGCTCTTTGGCTCCTTGGCTCTGAAAAAC	X	-	82185752-82185801	Xq31	PREDICTED: Rattus norvegicus similar to Zinc finger X-linked protein ZXDB (predicted) (RGD1563355_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666934-S	ILMN_56894	RGD1563355_PREDICTED	XM_234140.4	XM_234140.4		314119	109510845	XM_234140.4	RGD1563355_predicted	XP_234140.3	ILMN_1373465	0004010128	S	1389	CCCTGCCGAAAATAGCAACAGCAACCATTCCTTGGGGCAAGCGGTGGACC	X	-	82185919-82185968	Xq31	PREDICTED: Rattus norvegicus similar to Zinc finger X-linked protein ZXDB (predicted) (RGD1563355_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654762-S	ILMN_51079	TCFAP2D_PREDICTED	XM_236975.4	XM_236975.4		301284	109485866	XM_236975.4	Tcfap2d_predicted	XP_236975.3	ILMN_1359697	0003170739	S	1672	GGGGGTGACTAATCTTCAGTGGACCAAATCTTTACCCTTCCCGAGCCCTC	9	+	18006861-18006910	9q13	PREDICTED: Rattus norvegicus transcription factor AP-2, delta (predicted) (Tcfap2d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643222-S	ILMN_60060	BHLHB5_PREDICTED	XM_345190.3	XM_345190.3		365748	109464638	XM_345190.3	Bhlhb5_predicted	XP_345191.1	ILMN_1369295	0000580484	S	2788	CAGGTTGGATGGTGATTTCAGAGCTATGGTGGATCTATCGGTGGGTTTCG	2	+	103089223-103089272	2q24	PREDICTED: Rattus norvegicus basic helix-loop-helix domain containing, class B5 (predicted) (Bhlhb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645066-S	ILMN_266898	RGD1564139_PREDICTED	XR_007824.1	XR_007824.1		366034	109469833	XR_007824.1	RGD1564139_predicted		ILMN_1371258	0000520338	S	2760	GGTGCTGACTGCCAATACCTACATCCTGGTCCGTGTGGTTACGGTCATTG				3q11	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 144 (predicted) (RGD1564139_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639226-S	ILMN_285018	LOC499110	XM_001077990.1	XM_001077990.1		499110	109461543	XM_001077990.1	LOC499110	XP_001077990.1	ILMN_1372462	0000110162	S	1395	GCCGGGCTTCGCTTGTGTCAACTGTATTTTTAGGGCTCCTGCGCCGAAAC				1q21	PREDICTED: Rattus norvegicus similar to Zinc finger protein 354A (Transcription factor 17) (Renal transcription factor Kid-1) (Kidney, ischemia, and developmentally regulated protein 1) (LOC499110), mRNA.					
Rattus norvegicus	RefSeq	GI_62641598-S	ILMN_262383	SIGIRR	NM_001024887.1	NM_001024887.1		309106	67846049	NM_001024887.1	Sigirr	NP_001020058.1	ILMN_1352630	0004150270	S	1385	TGCGCGAACAGACTTCTACTGCCTTGTGTCTGAGGATGACGTGTAGCCCT	1	-	201288577-201288581:201288582-201288626	1q41	Rattus norvegicus single immunoglobulin and toll-interleukin 1 receptor (TIR) domain (Sigirr), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45079] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC114558; RGD1306732	MGC114558; RGD1306732
Rattus norvegicus	RefSeq	GI_62647165-S	ILMN_53643	LOC502751	XM_580256.1	XM_580256.1		502751	62647165	XM_580256.1	LOC502751	XP_580256.1	ILMN_1359128	0001690484	S	69	TCCCCAGAAGACCTGGGCCACGAGCAAGATACCGAGCACAGGATGGAGTT					PREDICTED: Rattus norvegicus LOC502751 (LOC502751), mRNA.					
Rattus norvegicus	RefSeq	GI_62647245-S	ILMN_57666	RGD1564287_PREDICTED	XM_342683.3	XM_342683.3		362360	109472022	XM_342683.3	RGD1564287_predicted	XP_342684.3	ILMN_1369761	0001980044	S	2964	CACCGGCTGTTTGGAAAATGGCATGAGAGCATCTACTGTGGCGGTGCCTC	4	-	78528197-78528246	4q24	PREDICTED: Rattus norvegicus similar to mKIAA0704 protein (predicted) (RGD1564287_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638359-S	ILMN_68433	RGD1559962_PREDICTED	XM_574279.2	XM_574279.2		498988	109457632	XM_574279.2	RGD1559962_predicted	XP_574279.1	ILMN_1357050	0005080044	S	550	GGAGGAGTATGAAAAGGATATTGCTGCGTACCGTGCCAAGGGCAAAAGTG	1	-	19873759-19873808	1p12	PREDICTED: Rattus norvegicus similar to High mobility group protein 2 (HMG-2) (predicted) (RGD1559962_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850603-S	ILMN_273110	PPM1J	NM_001005540.1	NM_001005540.1		295341	53850603	NM_001005540.1	Ppm1j	NP_001005540.1	ILMN_1350289	0005360592	S	1464	ATGACATCTCGGTCTTCGTTATCCCCCTGGGAGGGCCAGGCAGCAGTTAC	2	+	200044476-200044525	2q34	Rattus norvegicus protein phosphatase 1J (Ppm1j), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC95205	MGC95205
Rattus norvegicus	RefSeq	GI_56847623-A	ILMN_281030	KRT23	NM_001008753.1	NM_001008753.1		287678	56847623	NM_001008753.1	Krt23	NP_001008753.1	ILMN_1376733	0002470411	S	925	TCCGCTTTGGAAAACATGCTGACAGAGACCCAGGCTCGATACTCCTGCCG	10	-	88423647-88423696	10q32.1	Rattus norvegicus keratin 23 (histone deacetylase inducible) (Krt23), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Ka23	Ka23
Rattus norvegicus	RefSeq	GI_62651193	ILMN_51637	LOC500713	XM_580109.1	XM_580109.1		500713	62651193	XM_580109.1	LOC500713	XP_580109.1	ILMN_1650656	0005910451	S	839	GCCGTTCAGTTCCTGTGTACAGTCGCTCACCAGCAGCCACCAGACAGTGG					PREDICTED: Rattus norvegicus LOC500713 (LOC500713), mRNA.					
Rattus norvegicus	RefSeq	GI_62644208-S	ILMN_64613	RGD1563465_PREDICTED	XM_227605.4	XM_227605.4		295382	109465397	XM_227605.4	RGD1563465_predicted	XP_227605.4	ILMN_1348810	0002370471	S	3519	CGTCGTGCAGAGATTTCTCTGTAAGGGCAACGAGCGTGCTGGCATCAAAG	2	-	205439780-205439829	2q41	PREDICTED: Rattus norvegicus similar to netrin G1 (predicted) (RGD1563465_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164056-S	ILMN_278893	V1RC6	NM_001009519.1	NM_001009519.1		494239	57164056	NM_001009519.1	V1rc6	NP_001009519.1	ILMN_1354077	0004730563	S	641	GCAACAGAAACCCGAGAACATCCCCTGAGAAAAAGGCCACCCAGACCATC	4	+	86173257-86173306	4q24	Rattus norvegicus vomeronasal 1 receptor, C6 (V1rc6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981165-S	ILMN_281417	PLAGL1	NM_012760.1	NM_012760.1		25157	6981165	NM_012760.1	Plagl1	NP_036892.1	ILMN_1364222	0001170059	S	4819	CCCTTGAAGACTCTGTATTTCCCAGCATTTGTACCCTAACCCTTGAAGAC	1	+	7922413-7922462	1p13	Rattus norvegicus pleiomorphic adenoma gene-like 1 (Plagl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Lot1	Lot1
Rattus norvegicus	RefSeq	GI_62659132-S	ILMN_267886	LOC304725	XR_007922.1	XR_007922.1		304725	109498445	XR_007922.1	LOC304725		ILMN_1366894	0004060021	S	3566	AAGGGACCTTGACAGAATCCAGCTGTGGCTCCATGGTAGAATCTTATGCT				13p13	PREDICTED: Rattus norvegicus similar to contactin associated protein-like 5 isoform 1 (LOC304725), mRNA.					
Rattus norvegicus	RefSeq	GI_62650643-S	ILMN_69943	LOC298980	XM_234081.3	XM_234081.3		298980	62650643	XM_234081.3	LOC298980	XP_234081.3	ILMN_1364975	0001740021	S	3521	GGCCCTTTCTGGAAGTGACCTTGATACCCCAGCCAGATCTCCGGAACGTC					PREDICTED: Rattus norvegicus similar to Dedicator of cytokinesis protein 4 (LOC298980), mRNA.					
Rattus norvegicus	RefSeq	GI_62664271	ILMN_298630	PCDHGA11	NM_001037153.1	NM_001037153.1		252897	89363039	NM_001037153.1	Pcdhga11	NP_001032230.1	ILMN_1649770	0001050373	S	2146	TTCTGGAGGACTTGGTTAGTCTAGAGTCTCCTGCCAACCGGGATGAGTCG	18	+	30666669-30666718	18p11	Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]			
Rattus norvegicus	RefSeq	GI_62650493-S	ILMN_62410	LOC313967	XM_234034.3	XM_234034.3		313967	62650493	XM_234034.3	LOC313967	XP_234034.3	ILMN_1366371	0004780600	S	10053	GGAGTTGTGCGGGGCTACGGTTGTGAAAAGCAGGGCAAGGAAGAAAGGCT					PREDICTED: Rattus norvegicus similar to 4933425L03Rik protein (LOC313967), mRNA.					
Rattus norvegicus	RefSeq	GI_62643592	ILMN_55078	RGD1560010_PREDICTED	XM_227284.4	XM_227284.4		310537	109464968	XM_227284.4	RGD1560010_predicted	XP_227284.3	ILMN_1650889	0000460025	S	382	CGTGGCGAGACCTCCTGAAAGAAGGCTATGACTCGCTGAAACCCGACAAC	2	+	171032815-171032864	2q32	PREDICTED: Rattus norvegicus RGD1560010 (predicted) (RGD1560010_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079054-S	ILMN_295877	IDH2	NM_001014161.1	NM_001014161.1		361596	62079054	NM_001014161.1	Idh2	NP_001014183.1	ILMN_1353248	0003710551	S	879	TGGTACGAGCATCGGCTCATTGACGACATGGTGGCTCAGGTGCTCAAGTC	1	-	135879147-135879196	1q31	Rattus norvegicus isocitrate dehydrogenase 2 (NADP+), mitochondrial (Idh2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate [goid 6097] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle [goid 6102] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence ISS]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.3490	ILMN_295877	IDH2	NM_001014161.1	NM_001014161.1		361596	62079054	NM_001014161.1	Idh2	NP_001014183.1	ILMN_1530334	0001230471	S	834	ATCTTTGACAAGCACTATAAGACTGACTTTGACAAGAATAAGATCTGGTA	1	-	135879192-135879231:135879405-135879414	1q31	Rattus norvegicus isocitrate dehydrogenase 2 (NADP+), mitochondrial (Idh2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate [goid 6097] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle [goid 6102] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence ISS]; Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+ [goid 4450] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667110-S	ILMN_67010	LOC367865	XM_346332.2	XM_346332.2		367865	62667110	XM_346332.2	LOC367865	XP_346333.2	ILMN_1349835	0000630253	S	372	GGCTCCTTTACCTGGTGTGAGACCATCCATTGGCCGACATCTGTCACCAT				Xq31	PREDICTED: Rattus norvegicus similar to small nuclear ribonucleoparticle-associated protein (LOC367865), mRNA.					
Rattus norvegicus	RefSeq	GI_62651094-S	ILMN_69596	RGD1309492_PREDICTED	XM_234430.4	XM_234430.4		314330	109478544	XM_234430.4	RGD1309492_predicted	XP_234430.2	ILMN_1363151	0005890156	S	1258	GCTGAAGGAGCAAACCCAGATGTTTATAGAGGCCACCAAGAGCAGGGCTC	6	+	111095631-111095680	6q31	PREDICTED: Rattus norvegicus similar to mKIAA1737 protein (predicted) (RGD1309492_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641743-S	ILMN_273894	MUS81	NM_001025645.1	NM_001025645.1		293678	71043705	NM_001025645.1	Mus81	NP_001020816.1	ILMN_1350883	0006770025	S	1690	CTGAGCACCGTCAAGTGTGGGCGTCTGCAGAGAAATCTGGGACCTGCTCT	1	-	208126703-208126721:208126800-208126830	1q43	Rattus norvegicus MUS81 endonuclease homolog (S. cerevisiae) (Mus81), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC112911	MGC112911
Rattus norvegicus	RefSeq	GI_62638509-S	ILMN_53032	TIAM2_PREDICTED	XM_217851.3	XM_217851.3		308142	62638509	XM_217851.3	Tiam2_predicted	XP_217851.3	ILMN_1364098	0003440131	S	2637	GCAAACAGCACTAAGAGGGGCCGAGGAACTTTGCTCAAGGCGCAGACACG					PREDICTED: Rattus norvegicus T-cell lymphoma invasion and metastasis 2 (predicted) (Tiam2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658050-S	ILMN_272466	LEPREL1	NM_001025627.1	NM_001025627.1		288016	71043725	NM_001025627.1	Leprel1	NP_001020798.1	ILMN_1361475	0007000280	S	2128	GCTGTGGCACTGTGGTTCACCCTAGACCCTCTCTACCGAGAATTGGAGCG	11	+	76824099-76824142:76828595-76828600	11q22-q23	Rattus norvegicus leprecan-like 1 (Leprel1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence IEA]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-3-hydroxy-L-proline + succinate + CO2 [goid 19797] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC116247	MGC116247
Rattus norvegicus	RefSeq	GI_11559999-S	ILMN_280241	GPR20	NM_022216.1	NM_022216.1		60667	11559999	NM_022216.1	Gpr20	NP_071552.1	ILMN_1366114	0003120600	S	829	CTTGTGGCTTACCATGTGGCCGTCACCCTCAGCAGCCTCAACAGCTGCAT	7	-	111405563-111405612	7q34	Rattus norvegicus G protein-coupled receptor 20 (Gpr20), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	P2Y4; Gpcr5-1	P2Y4; Gpcr5-1
Rattus norvegicus	RefSeq	GI_62718105-S	ILMN_298698	LOC308198	XM_217963.3	XM_217963.3		308198	62718105	XM_217963.3	LOC308198	XP_217963.3	ILMN_1365747	0002190072	S	38	GGCAGGCAAGGACAGATTTCTCCTCTTCCGAACAAGGACTCAATATGACT	Un|NW_047869.1	-	64779-64814:64953-64966		PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC308198), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393059-S	ILMN_286799	CACNB1	NM_017346.1	NM_017346.1		50688	8393059	NM_017346.1	Cacnb1	NP_059042.1	ILMN_1367146	0003940563	S	2953	CTCCCCAGCATCACAGCTGGTCCAGAGAGAGCCGATTGTGCCAACGAGGA	10	-	86764544-86764593	10q31	Rattus norvegicus calcium channel, voltage-dependent, beta 1 subunit (Cacnb1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IEA]	The process of directing proteins towards a membrane using signals contained within the protein [goid 6612] [evidence ISS]; The process of directing proteins towards a membrane using signals contained within the protein [goid 6612] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the transmembrane transfer of a calcium ion by a high voltage-gated channel [goid 8331] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a high voltage-gated channel [goid 8331] [evidence IEA];  [goid 15270] [evidence ISS];  [goid 15270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662782-S	ILMN_61371	LOC364610	XM_577529.1	XM_577529.1		364610	62662782	XM_577529.1	LOC364610	XP_577529.1	ILMN_1372563	0006040040	S	120	GGAGGGGTAGACCTTGGCAATCTTGACGGAGAGGGAGATGGAGAAGAGGA				16q12.3	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S25 (LOC364610), mRNA.					
Rattus norvegicus	RefSeq	GI_58865833-A	ILMN_271847	HSFY2	NM_001012132.1	NM_001012132.1		316409	58865833	NM_001012132.1	Hsfy2	NP_001012132.1	ILMN_1376342	0002760546	S	1214	GCATCTACCACGTTGGCATCGACATCAAACCATCACCCATCTTCGTGAGG	9	-	55495664-55495666:55495667-55495713	9q31	Rattus norvegicus heat shock transcription factor, Y linked 2 (Hsfy2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640853-S	ILMN_57563	LOC502346	XM_577814.1	XM_577814.1		502346	62640853	XM_577814.1	LOC502346	XP_577814.1	ILMN_1366615	0005130017	S	298	CCCAGCAGACAATGCCCCTGGAACTGGAAACCTCTCAACAAGCAGCAACG					PREDICTED: Rattus norvegicus similar to hypothetical protein D430020F16 (LOC502346), mRNA.					
Rattus norvegicus	RefSeq	GI_62649873-S	ILMN_51926	ZBTB40_PREDICTED	XM_342953.3	XM_342953.3		362635	109475647	XM_342953.3	Zbtb40_predicted	XP_342954.3	ILMN_1363182	0005550132	S	3414	CGTCACCACAGAGCACTTCAAGCAGTCAGAAAGCACCTTCCCCTGTGAGC	5	-	155750778-155750827	5q36	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 40 (predicted) (Zbtb40_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61097940-S	ILMN_296834	DDX1	NM_053414.1	NM_053414.1		84474	61097940	NM_053414.1	Ddx1	NP_445866.1	ILMN_1351457	0000940524	S	2130	CTGCTGGCGGTGGGAACTATAAAGGCCATGTGGACATCCTGGCACCTACC	6	-	36794885-36794926:36795588-36795595	6q15	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 (Ddx1), mRNA.		The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577908-S	ILMN_267546	OLR114	NM_001000951.1	NM_001000951.1		405297	47577908	NM_001000951.1	Olr114	NP_001000951.1	ILMN_1363288	0000870193	S	444	GGCCATTTTATGTAGGAGTTCTATGCTCATTCCTCCAGGTATTATTCGCC	1	-	161348042-161348091	1q32	Rattus norvegicus olfactory receptor 114 (Olr114), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr114	Olr114
Rattus norvegicus	RefSeq	GI_62663409-S	ILMN_52913	ELOVL2_PREDICTED	XM_574001.2	XM_574001.2		498728	109504818	XM_574001.2	Elovl2_predicted	XP_574001.2	ILMN_1353247	0001240446	S	3153	GGTCGTCGCCTTCCTGTGGCAGATCAACAATGGCAGCTCAAAGTACCAGC	17	+	29531917-29531966	17p12	PREDICTED: Rattus norvegicus elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 (predicted) (Elovl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649127-S	ILMN_300192	RGD1561090_PREDICTED	XM_001067936.1	XM_001067936.1		313278	109476669	XM_001067936.1	RGD1561090_predicted	XP_001067936.1	ILMN_1361589	0003120739	S	6047	CTACAGGCCCTTCGCTATTCATGGAGTCTCTTCTGAGCCATACGGGGCAC				5q31	PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase, receptor type, D (predicted) (RGD1561090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506884-S	ILMN_270078	MCPT4	NM_019321.1	NM_019321.1		54270	9506884	NM_019321.1	Mcpt4	NP_062194.1	ILMN_1353715	0002760333	S	494	CACTGAGGGAGGTCATGCTGAGAATCATGGAAATGAAGGCCTGTAAGGAC	15	+	34169429-34169478	15p13	Rattus norvegicus mast cell protease 4 (Mcpt4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62664375-S	ILMN_70324	LOC497723	XM_579534.1	XM_579534.1		497723	62664375	XM_579534.1	LOC497723	XP_579534.1	ILMN_1356811	0004760091	S	5857	GCCAGACGTTCTCAAGGTTGCAGTAGTACTCTAAAACGAAACTTCTCAAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031798 (LOC497723), mRNA.					
Rattus norvegicus	RefSeq	GI_62650284-S	ILMN_52110	RGD1304935_PREDICTED	XM_233830.4	XM_233830.4		313866	109477887	XM_233830.4	RGD1304935_predicted	XP_233830.4	ILMN_1373452	0002100273	S	4412	GCAGCCAGCCCCTTCTGTCCAACAACAGACCTACCAAAGGCCCCACCTTA	6	+	7986022-7986071	6q12	PREDICTED: Rattus norvegicus similar to CG12467-PA (predicted) (RGD1304935_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651262-S	ILMN_276196	RGD1307503_PREDICTED	XM_001071398.1	XM_001071398.1		314456	109480006	XM_001071398.1	RGD1307503_predicted	XP_001071398.1	ILMN_1363035	0002470546	S	4299	GACGTTCAGCCATTCACACAACACCCAGAACAACCAGGCAGCCACCTCCC				6q32	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0297/KIAA0329 (predicted) (RGD1307503_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58000420-S	ILMN_285830	GGNBP1	NM_001009972.1	NM_001009972.1		494520	58000420	NM_001009972.1	Ggnbp1	NP_001009972.1	ILMN_1349699	0006520301	S	1085	GACATCACGCTGGAGGAGGCTGGCATGGTGGATGGTCAGCATCTGCTCCT	20	+	5270194-5270232:5271389-5271399	20p12	Rattus norvegicus gametogenetin-binding protein 1 (Ggnbp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124911	MGC124911
Rattus norvegicus	RefSeq	GI_62717942-S	ILMN_56938	LOC501259	XM_576679.1	XM_576679.1		501259	62717942	XM_576679.1	LOC501259	XP_576679.1	ILMN_1362641	0003990102	S	1195	GATGGGGAGGGGTCTGTGGGCAGCAAGTAGACACACCACCCAACACGGAT					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC501259), mRNA.					
Rattus norvegicus	RefSeq	GI_11993951-S	ILMN_301122	SRPX	NM_022524.1	NM_022524.1		64316	11993951	NM_022524.1	Srpx	NP_071969.1	ILMN_1373216	0004010592	S	1434	GAGATGGGCCAGTCTTGCAACACCTGATGTGCTGTTCCATTTCCTGGTGC	X	+	24903958-24903983:24903984-24904007	Xq13	Rattus norvegicus sushi-repeat-containing protein, X-linked (Srpx), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]			Drs; MGC105430	Drs; MGC105430
Rattus norvegicus	RefSeq	GI_62653266-S	ILMN_263974	LOC686577	XM_001074823.1	XM_001074823.1		686577	109484266	XM_001074823.1	LOC686577	XP_001074823.1	ILMN_1361185	0003870671	S	1464	CCTGTGTCTGGCTGGCGGCTCAGAACTTGATCTCCCATCTTCAGCACTGA					PREDICTED: Rattus norvegicus similar to NIMA (never in mitosis gene a)-related expressed kinase 2 (LOC686577), mRNA.					
Rattus norvegicus	RefSeq	GI_8393474-S	ILMN_269387	GRIA2	NM_017261.1	NM_017261.1		29627	8393474	NM_017261.1	Gria2	NP_058957.1	ILMN_1356417	0005220195	S	5576	TAGTACCTTATTCTCTGCTGTGTTAAGTGGGTGTCGTACTCCAAGGAGAC	2	-	172266275-172266324	2q33	Rattus norvegicus glutamate receptor, ionotropic, AMPA2 (Gria2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]; A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density [goid 32279] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus [goid 32281] [evidence ISS]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [pmid 11836517] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 10414981] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 11100149] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [pmid 11348590] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [pmid 10414981] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [pmid 11100149] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [pmid 10027300] [evidence IPI]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 10027300] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IPI]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; Any process that modulates the frequency, rate, or extent of receptor recyling [goid 1919] [pmid 11348590] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [pmid 15269270] [evidence IEP]; The process by which cell surface receptors are monoubiquitinated following ligand-induced activation, and subsequently taken up into endocytic vesicles and targeted to the lysosome or vacuole for degradation; serves as a mechanism to downregulate receptor signaling [goid 31623] [pmid 11100149] [evidence IDA]; The directed movement of a protein to a specific location [goid 45184] [pmid 11348590] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [pmid 11348590] [evidence IMP]; Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51966] [pmid 9697854] [evidence IMP]	Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence TAS]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence ISS];  [goid 4971] [evidence TAS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [pmid 11348590] [evidence IDA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA];  [goid 5246] [pmid 9697854] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10558890] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10027300] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11348590] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9697854] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 10558890] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 10027300] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 9697854] [evidence IPI]	gluR-B; GluR2	gluR-B; GluR2
Rattus norvegicus	RefSeq	GI_62645108-S	ILMN_273596	RGD1562474_PREDICTED	XM_001065608.1	XM_001065608.1		295602	109469912	XM_001065608.1	RGD1562474_predicted	XP_001065608.1	ILMN_1353144	0004610132	S	7004	AGGCAGTAAATGGGGTAGAGAGCAAGACCCTGTCCACGGATGAAGAAAGG				3q12	PREDICTED: Rattus norvegicus similar to Rap1-interacting factor 1 (predicted) (RGD1562474_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665898-I	ILMN_48663	PHYHIPL_PREDICTED	XM_574744.1	XM_574744.1		309901	62665898	XM_574744.1	Phyhipl_predicted	XP_574744.1	ILMN_1375943	0005900500	S	1120	AGTCAAATAACCACGATTGCACTGAGCAGCGGCCATTTCCTTTCTCTGGC				20p11	PREDICTED: Rattus norvegicus phytanoyl-CoA hydroxylase interacting protein-like (predicted) (Phyhipl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643865-S	ILMN_68967	LOC499669	XM_574988.1	XM_574988.1		499669	62643865	XM_574988.1	LOC499669	XP_574988.1	ILMN_1357868	0001940619	S	1899	CTGAAGTAGCTGTGGAGGCCCAGGAGGACAGCAGGGCATTCTCTTTCCCA				2q34	PREDICTED: Rattus norvegicus similar to trinucleotide repeat containing 4 (LOC499669), mRNA.					
Rattus norvegicus	RefSeq	GI_62656547-S	ILMN_55295	RGD1562631_PREDICTED	XM_573142.2	XM_573142.2		497955	109488542	XM_573142.2	RGD1562631_predicted	XP_573142.2	ILMN_1360468	0000520487	S	381	TTCGTGGCAGACGGAGTTGACATGCTGTGGAATCAGACGTTGGCCCAGGC	10	+	62787583-62787632	10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010305C02 (predicted) (RGD1562631_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649773-S	ILMN_69507	LOC362615	XM_342933.2	XM_342933.2		362615	62649773	XM_342933.2	LOC362615	XP_342934.2	ILMN_1370392	0006350609	S	1588	CCATGAAGCGAGGAAAAGGGACCAGAGCACTAATCCAGAGAGGGTCGGCG				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D930035B09 (predicted) (LOC362615), mRNA.					
Rattus norvegicus	RefSeq	GI_62667333-S	ILMN_277804	LOC678785	XM_001053168.1	XM_001053168.1		678785	109469954	XM_001053168.1	LOC678785	XP_001053168.1	ILMN_1362398	0002260408	S	136	AATCATCGGGATTCATGGTGGCTGAGTGCCTTAGGGGCTTTGCTGGCCCT					PREDICTED: Rattus norvegicus similar to testis expressed gene 13 (LOC678785), mRNA.					
Rattus norvegicus	RefSeq	GI_11560029-S	ILMN_294584	DNAJC3	NM_022232.1	NM_022232.1		63880	11560029	NM_022232.1	Dnajc3	NP_071568.1	ILMN_1368822	0004560167	S	1406	CTCAGCAAGGAGGTGGTAGCAATCCCTTCCACAGAAGTTGGGACTCATGG	15	+	103921186-103921235	15q24	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 3 (Dnajc3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643197-S	ILMN_58826	LOC310214	XM_226929.3	XM_226929.3		310214	62643197	XM_226929.3	LOC310214	XP_226929.3	ILMN_1368640	0002970358	S	2099	CCGGGACCTGTGTGAAGGGTGGCAACTGCAGCAACATGATTTCATCTCTC				2q23	PREDICTED: Rattus norvegicus similar to Transducin-like enhancer protein 4 (Groucho-related protein 4) (Grg-4) (LOC310214), mRNA.					
Rattus norvegicus	RefSeq	GI_62656660-S	ILMN_62073	RAD51L3_PREDICTED	XM_220773.3	XM_220773.3		303375	109488650	XM_220773.3	Rad51l3_predicted	XP_220773.2	ILMN_1370051	0006040239	S	1351	GCCAGAGGTTGCTGCAGTAGGAGAGGCCTAGAAGTCCATCGGGGTCTCAA	10	-	71094012-71094061	10q26	PREDICTED: Rattus norvegicus RAD51-like 3 (S. cerevisiae) (predicted) (Rad51l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855556-S	ILMN_266594	SLC37A3_PREDICTED	XM_001067156.1	XM_001067156.1		312255	109473310	XM_001067156.1	Slc37a3_predicted	XP_001067156.1	ILMN_1371829	0003990162	S	1432	CAGTCACAGGGATCGTTGATGGAACTGGGAGTATTGGTGCTGCCGTGGGC				4q22	PREDICTED: Rattus norvegicus solute carrier family 37 (glycerol-3-phosphate transporter), member 3 (predicted) (Slc37a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_22024397-S	ILMN_265462	LHX1	NM_145880.1	NM_145880.1		257634	22024397	NM_145880.1	Lhx1	NP_665887.1	ILMN_1356640	0007000519	S	1747	CTGTCGGTCAATGGTGGAGCCAGCTACGGGAATCACTTGTCTCACCCTCC	10	-	72800604-72800653	10q26	Rattus norvegicus LIM homeobox protein 1 (Lhx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure [goid 1655] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The formation of ectoderm during gastrulation [goid 1705] [evidence ISS]; The formation of the endoderm during gastrulation [goid 1706] [evidence ISS]; The formation of the endoderm during gastrulation [goid 1706] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEA]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence IEA]; The process that mediates the transfer of information from Purkinje cells to granule cell precursors resulting in an increase in rate of granule cell precursor cell proliferation [goid 21937] [evidence ISS]; The process that mediates the transfer of information from Purkinje cells to granule cell precursors resulting in an increase in rate of granule cell precursor cell proliferation [goid 21937] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638316-S	ILMN_264848	RGD1560020_PREDICTED	XM_001061499.1	XM_001061499.1		498982	109460386	XM_001061499.1	RGD1560020_predicted	XP_001061499.1	ILMN_1363601	0006110458	S	2705	CGCTGCTATGGTTTTAGCCTGTAGACATGCTGCTAGTGTCAAAAGGTTGG				1p12	PREDICTED: Rattus norvegicus similar to Myb proto-oncogene protein (C-myb) (predicted) (RGD1560020_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660565-S	ILMN_269935	MED28_PREDICTED	XM_001059017.1	XM_001059017.1		305391	109500714	XM_001059017.1	Med28_predicted	XP_001059017.1	ILMN_1355511	0006650672	S	769	GACATGCCTCAGGGCTCCTTGGCCTACCTTGAGCAGGCATCTGCCAACAT				14q21	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 28 homolog (yeast) (predicted) (Med28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666470-S	ILMN_54762	LOC501509	XM_576908.1	XM_576908.1		501509	62666470	XM_576908.1	LOC501509	XP_576908.1	ILMN_1355316	0001410672	S	198	CTCTGTGAGAAGCCACTGAAGTGGGCAGAGAGAACAGAAAAGACTTCCAC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501509), mRNA.					
Rattus norvegicus	RefSeq	GI_16758813-S	ILMN_295232	GP1BB	NM_053930.3	NM_053930.3		116727	66267728	NM_053930.3	Gp1bb	NP_446382.1	ILMN_1350620	0005860044	S	842	GCCAGTACTACCAGAATGAGGCAACCTTGAGTCTTCAGAGCCTAGAGTGC	11	+	84370867-84370916	11q23	Rattus norvegicus glycoprotein Ib, beta polypeptide (Gp1bb), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; The lipid bilayer surrounding the platelet alpha granule [goid 31092] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_61557069-S	ILMN_289728	FARS2	NM_001013139.1	NM_001013139.1		306879	61557069	NM_001013139.1	Fars2	NP_001013157.1	ILMN_1353738	0002900110	S	1263	CAAGAAGAAAGGGCCACAGGAATACAAAGGAAGATGGGAAGACAGCTCTG	17	-	34813401-34813450	17p12	Rattus norvegicus phenylalanyl-tRNA synthetase 2, mitochondrial (Fars2), nuclear gene encoding mitochondrial protein, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6432] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence ISS]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence ISS]	Interacting selectively with transfer RNA [goid 49] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe) [goid 4826] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	Fars1	Fars1
Rattus norvegicus	RefSeq	GI_25742738-S	ILMN_296881	ACSL1	NM_012820.1	NM_012820.1		25288	25742738	NM_012820.1	Acsl1	NP_036952.1	ILMN_1363750	0002060592	S	3390	GAAGCCACTGTTGTTGGCTGTGTGACAGTGTGTGTATCTTGAAGCACAAC	16	-	49037113-49037162	16q11	Rattus norvegicus acyl-CoA synthetase long-chain family member 1 (Acsl1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence TAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA [goid 3987] [evidence TAS]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IDA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	COAA; ACS; Facl2; Acas	COAA; ACS; Facl2; Acas
Rattus norvegicus	RefSeq	GI_62661418-S	ILMN_63760	LOC364367	XM_344390.2	XM_344390.2		364367	62661418	XM_344390.2	LOC364367	XP_344391.2	ILMN_1366708	0006370369	S	433	CCCAAGGATATGGGATTAATGTGGAGGCACAAGAGAATTGGGGCACCAGG				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor V alpha 2 chain subunit (LOC364367), mRNA.					
Rattus norvegicus	RefSeq	GI_18677738-S	ILMN_294221	CDKN2B	NM_130812.1	NM_130812.1		25164	18677738	NM_130812.1	Cdkn2b	NP_570825.1	ILMN_1364351	0005720487	S	604	CTATCTAGGAAGACTGTAAACGTGGAGAGGATCAGCAGCGCACAGCCTGC	5	-	108941316-108941365	5q32	Rattus norvegicus cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) (Cdkn2b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence IEA]; Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence ISS]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation [goid 30858] [evidence IEP]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence IEA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence IEA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]; Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence IEA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]; Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence IEA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 31670] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]	p15	p15
Rattus norvegicus	RefSeq	GI_62641418	ILMN_289200	RGD1561509_PREDICTED	XM_001067959.1	XM_001067959.1		308868	109462541	XM_001067959.1	RGD1561509_predicted	XP_001067959.1	ILMN_1650049	0002360309	S	739	ACCCCGCTTCCTACAATATACCAAGAGCTGTGGTCGCTATCGCTGCCGCC				1q32	PREDICTED: Rattus norvegicus similar to Catechol O-methyltransferase (predicted) (RGD1561509_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663368-S	ILMN_50653	LOC497711	XM_579745.1	XM_579745.1		497711	62663368	XM_579745.1	LOC497711	XP_579745.1	ILMN_2040644	0005690500	S	2494	GTCTGTGTGTTGTGGGCATAGGAGGCTAAACTGAACATGGACTCTGACTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_214457 (LOC497711), mRNA.					
Rattus norvegicus	RefSeq	GI_62641284-S	ILMN_277604	GDPD3_PREDICTED	XR_009334.1	XR_009334.1		293490	109462883	XR_009334.1	Gdpd3_predicted		ILMN_1364713	0006620368	S	957	CCCCACAGCCCTAAGACACTACCTGGACAAGCAGGAACAAAGAGACTCAG				1q36	PREDICTED: Rattus norvegicus glycerophosphodiester phosphodiesterase domain containing 3 (predicted) (Gdpd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648770-S	ILMN_62943	RGD1561162_PREDICTED	XM_216364.4	XM_216364.4		297962	109474697	XM_216364.4	RGD1561162_predicted	XP_216364.3	ILMN_1362326	0006980427	S	701	CGGGGTCGAAGACACAGACAACGAAACATTCTCACTTCCGGTCACACTCC	5	+	49526788-49526837	5q21	PREDICTED: Rattus norvegicus similar to 35 kDa SR repressor protein (SRrp35) (predicted) (RGD1561162_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27684282-S	ILMN_285188	ACTR1A_PREDICTED	XM_001059244.1	XM_001059244.1		294010	109463953	XM_001059244.1	Actr1a_predicted	XP_001059244.1	ILMN_2040250	0005340561	S	2871	GACCAAAGGCCCCTGCCAGATGTAAAGCGAAGCTGGTGTGTGTGGAATCG				1q54	PREDICTED: Rattus norvegicus ARP1 actin-related protein 1 homolog A (yeast) (predicted) (Actr1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649023-A	ILMN_288401	AKAP2	NM_001011974.1	NM_001011974.1		298024	58865523	NM_001011974.1	Akap2	NP_001011974.1	ILMN_1376914	0002690528	S	3145	TCGGCTGGGCGTTACGGAGGAGCAAACAGGCCATTCCAAGGCAACCAACA	5	+	75855193-75855242	5q24	Rattus norvegicus A kinase (PRKA) anchor protein 2 (Akap2), mRNA.		Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657101-S	ILMN_282683	NAGS_PREDICTED	XM_220939.3	XM_220939.3		303563	62657101	XM_220939.3	Nags_predicted	XP_220939.1	ILMN_1355252	0001500504	S	1805	TGGCCTTCAATGTTCAGCCTGGGGAATGGGACTAGGAGAGCCTTCCAGGG	10	+	91215354-91215403	10q32.1	PREDICTED: Rattus norvegicus N-acetylglutamate synthase (predicted) (Nags_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393635-S	ILMN_264831	ITGB1	NM_017022.1	NM_017022.1		24511	8393635	NM_017022.1	Itgb1	NP_058718.1	ILMN_1361299	0005890176	S	2667	GGTCACAGCGTGCCTTTTTAACCCTTCCTCCCGGACCCTTGGAATCAAGC	19	-	58600912-58600961	19q12	Rattus norvegicus integrin beta 1 (fibronectin receptor beta) (Itgb1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IMP]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IDA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IC ]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; A homeostatic process involved in the maintenance of an internal equilibrium within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function [goid 1894] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IDA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence ISS]; The process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast [goid 10002] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into a cardioblast cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed [goid 42685] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with an integrin [goid 5178] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642414-S	ILMN_63276	CUEDC2_PREDICTED	XM_215274.4	XM_215274.4		294009	109460182	XM_215274.4	Cuedc2_predicted	XP_215274.3	ILMN_1367469	0006900603	S	359	AGCTCCTGTGTCCAAGGTCATGTGCCTATTTTTCCAGAGACCCTGAGGCG	1	-	251547707-251547756	1q54	PREDICTED: Rattus norvegicus CUE domain containing 2 (predicted) (Cuedc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651481-S	ILMN_66130	LOC503062	XM_578583.1	XM_578583.1		503062	62651481	XM_578583.1	LOC503062	XP_578583.1	ILMN_1359283	0000380605	S	344	GATGGACAGGAAAACTGATGAGAGGATGCTCAGCAGAGGGCTGGAACTGG					PREDICTED: Rattus norvegicus similar to Ig gamma-1 chain C region membrane form (LOC503062), mRNA.					
Rattus norvegicus	RefSeq	GI_62718449-S	ILMN_60702	LOC501399	XM_576812.2	XM_576812.2		501399	109513650	XM_576812.2	LOC501399	XP_576812.1	ILMN_1371274	0001660739	S	617	GAGGCTCTGTGAAGAGGCCGGAATGAACATCTGTGACCCCAGTGCCACGC	Un|NW_047892.1	+	1577112-1577161		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501399), mRNA.					
Rattus norvegicus	RefSeq	GI_62641992-S	ILMN_68698	LOC502378	XM_577853.1	XM_577853.1		502378	62641992	XM_577853.1	LOC502378	XP_577853.1	ILMN_1352317	0005130687	S	815	GGTCAAAGCTCAGGAGAGCAGCTGCACCGCACTAATTCATCAGGTTCCGG					PREDICTED: Rattus norvegicus similar to membrane-spanning 4-domains, subfamily A, member 4C (LOC502378), mRNA.					
Rattus norvegicus	RefSeq	GI_47834330-S	ILMN_275872	OLR1748	NM_001001428.1	NM_001001428.1		405199	47834330	NM_001001428.1	Olr1748	NP_001001428.1	ILMN_1364086	0004050717	S	887	AGAGAGCATTCTGGAAGCTGCTGGGGAAGGACGTGGACTCTGGGGAAAGC	20	+	1530885-1530934	20p12	Rattus norvegicus olfactory receptor 1748 (Olr1748), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1748; Or3	Olr1748; Or3
Rattus norvegicus	RefSeq	GI_16758383	ILMN_59597	EFNA1	NM_053599.1	NM_053599.1		94268	16758383	NM_053599.1	Efna1	NP_446051.1	ILMN_1650100	0005220315	S	480	GGCAAAATCACTCACAGCCCCCACGCCCATGTCAACCCACAGGAGAAGAG				2q34	Rattus norvegicus ephrin A1 (Efna1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence NAS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin [goid 48013] [evidence ISS]; The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin [goid 48013] [evidence IEA]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence ISS]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence IEA]	Interacting selectively with an ephrin receptor [goid 46875] [evidence TAS]	B61	B61
Rattus norvegicus	RefSeq	GI_13676844-S	ILMN_284948	SH3GL3	NM_031238.1	NM_031238.1		81921	13676844	NM_031238.1	Sh3gl3	NP_112517.1	ILMN_1365281	0002510364	S	1090	GCATCCCAAGTCCCTAGGCGAGACTACATGCCAAAGCCTGTGAACACGAG	1	+	138506719-138506768	1q31	Rattus norvegicus SH3-domain GRB2-like 3 (Sh3gl3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding an early endosome [goid 31901] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	Sh3d2c1; SH3P13	Sh3d2c1; SH3P13
Rattus norvegicus	RefSeq	GI_62660433-S	ILMN_70403	RGD1565710_PREDICTED	XM_573591.2	XM_573591.2		498356	109499664	XM_573591.2	RGD1565710_predicted	XP_573591.1	ILMN_1349803	0004150113	S	1116	AGCACTTTCTGGTCTTGAGGTTCCTGGCTACGATTACAGGAGGTCTGACC	14	-	43176257-43176306	14p11	PREDICTED: Rattus norvegicus similar to MGC68837 protein (predicted) (RGD1565710_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658431	ILMN_49865	ZNF498_PREDICTED	XM_344076.3	XM_344076.3		363872	109495142	XM_344076.3	Znf498_predicted	XP_344077.3	ILMN_1650169	0006590161	S	1510	GAGAAGCCCTACACCTGCGAGTGTGGCAAGAGCTTCAGCAGGAACGCCAA	12	-	9640531-9640580	12p11	PREDICTED: Rattus norvegicus zinc finger protein 498 (predicted) (Znf498_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27701515-S	ILMN_287582	PNMA2_PREDICTED	XM_224322.1	XM_224322.1		305977	27701515	XM_224322.1	Pnma2_predicted	XP_224322.1	ILMN_1353513	0005220113	S	829	CGGAGAGCTGTGGAAAAAAGGGCCATCCCCCGGAACATTGCTGACCAGGT	15	+	46458634-46458683	15p12	PREDICTED: Rattus norvegicus paraneoplastic antigen MA2 (predicted) (Pnma2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652025-S	ILMN_48631	AMDHD1_PREDICTED	XM_235065.4	XM_235065.4		299735	109480470	XM_235065.4	Amdhd1_predicted	XP_235065.3	ILMN_1356434	0003120347	S	1382	CCTGTCACCAAACCTGATGGCCGGAGTTTGATCCTGGAGCTCACATGGTG	7	-	30557277-30557326	7q13	PREDICTED: Rattus norvegicus amidohydrolase domain containing 1 (predicted) (Amdhd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394353-S	ILMN_302731	SQLE	NM_017136.1	NM_017136.1		29230	8394353	NM_017136.1	Sqle	NP_058832.1	ILMN_1364854	0001400685	S	1804	GTCAGAGCCATGGGCTACAAAACCTCGGGCTCTTTTCAGTAGTGGTGCTA	7	+	96111386-96111435	7q33	Rattus norvegicus squalene epoxidase (Sqle), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IDA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]	Catalysis of the formation of a 2,3-epoxide in squalene [goid 4506] [evidence ISS]; Catalysis of the formation of a 2,3-epoxide in squalene [goid 4506] [evidence IDA]; Catalysis of the formation of a 2,3-epoxide in squalene [goid 4506] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661027-S	ILMN_265743	TTC18_PREDICTED	XM_001064202.1	XM_001064202.1		361006	109502123	XM_001064202.1	Ttc18_predicted	XP_001064202.1	ILMN_1355081	0000870091	S	2883	CGTCTGGGGTGTGAAGGGCCATCTCTACTTCCTGAGTGGAAACCATGCCG				15p16	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 18 (predicted) (Ttc18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605779-S	ILMN_266907	PMVK	NM_001008352.1	NM_001008352.1		310645	56605779	NM_001008352.1	Pmvk	NP_001008353.1	ILMN_1351884	0002060519	S	642	GGGTGAGCAGAGACTGATGGACCGGGCGAACCCTGCTTCTACCAGATGTG	2	+	181664881-181664930	2q34	Rattus norvegicus phosphomevalonate kinase (Pmvk), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]	Catalysis of the reaction: ATP + (R)-5-phosphomevalonate = ADP + (R)-5-diphosphomevalonate [goid 4631] [evidence IEA]; Catalysis of the reaction: ATP + (R)-5-phosphomevalonate = ADP + (R)-5-diphosphomevalonate [goid 4631] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105660	MGC105660
Rattus norvegicus	RefSeq	GI_62646597	ILMN_270472	RGD1307116_PREDICTED	XM_345494.2	XM_345494.2		366288	62646597	XM_345494.2	RGD1307116_predicted	XP_345495.2	ILMN_1649988	0003450097	S	1	ATGGAGACTTCAGAACCTACTCACCCTCCCCCGTCGTCCACGGATCAGCA	3|NW_047680.1	+	6703-6752		PREDICTED: Rattus norvegicus similar to dJ492J12.1 (novel protein similar to zinc finger protein human immunodeficiency virus type I enhancer-binding protein 1 (HIVEP1)) (predicted) (RGD1307116_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652318-S	ILMN_274447	FBXO43	XM_001059120.1	XM_001059120.1		315034	109482120	XM_001059120.1	Fbxo43	XP_001059120.1	ILMN_1364118	0001230041	S	2266	CTTAAAACGCCTCTGAAGAGACTAAGGAACCACTCCCGCGCTGGCCCGTG				7q22	PREDICTED: Rattus norvegicus F-box protein 43 (Fbxo43), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34878991-S	ILMN_51952	RGD1310738_PREDICTED	XM_223565.3	XM_223565.3		305478	109499941	XM_223565.3	RGD1310738_predicted	XP_223565.2	ILMN_1371946	0007100731	S	1087	AGTGGCTCCGGGTACTGCCCTGTAAGCATGAGTTCCACCGAGACTGCGTA	14	+	84766131-84766132:84766287-84766334	14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610009J22 (predicted) (RGD1310738_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526853-S	ILMN_297163	IFI35	NM_001009625.1	NM_001009625.1		287719	57526853	NM_001009625.1	Ifi35	NP_001009625.1	ILMN_1353674	0005050066	S	748	TGGGTCGGCAGCAGGTCCTTTTGAGGGTCTCTCCCTATGTGAGTGGGGAG	10	+	90483052-90483101	10q32.1	Rattus norvegicus interferon-induced protein 35 (Ifi35), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108976	MGC108976
Rattus norvegicus	RefSeq	GI_62649036-S	ILMN_290540	TSCOT_PREDICTED	XM_001062037.1	XM_001062037.1		298034	109476558	XM_001062037.1	Tscot_predicted	XP_001062037.1	ILMN_1369618	0002190156	S	1534	GGGTCACGACAAGGAGAGTGTGCGGATACACAGAGGAGCTGAAATGCCAG				5q24	PREDICTED: Rattus norvegicus thymic stromal cotransporter (predicted) (Tscot_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758535-S	ILMN_283647	AATF	NM_053720.1	NM_053720.1		114512	16758535	NM_053720.1	Aatf	NP_446172.1	ILMN_1374139	0004280736	S	1695	TGGGCAGTGACATTAGCATCCTCTCACGCTAACCTCTCACAGGACCCACC	10	-	72701779-72701819:72701820-72701828	10q26	Rattus norvegicus apoptosis antagonizing transcription factor (Aatf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any process that modulates the rate or extent of progress through the mitotic cell cycle [goid 7346] [evidence ISS]; The first few specialized divisions of an activated animal egg [goid 40016] [evidence ISS]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of beta-amyloid [goid 42985] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]; Interacting selectively with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48156] [evidence IPI]	Ded	Ded
Rattus norvegicus	RefSeq	GI_62667211-S	ILMN_49811	LOC367891	XM_579009.1	XM_579009.1		367891	62667211	XM_579009.1	LOC367891	XP_579009.1	ILMN_1372323	0005910059	S	326	TTGGGCCTTTTCTCCACCATCCAACCCGGTCTTCGGAGCCTGTGGCATTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300006C06 (LOC367891), mRNA.					
Rattus norvegicus	RefSeq	GI_62718077-S	ILMN_64174	LOC501286	XM_576701.1	XM_576701.1		501286	62718077	XM_576701.1	LOC501286	XP_576701.1	ILMN_1372580	0000450471	S	580	CAAGTTGCGGGCGAACATCCGCGATCCGCTCTAAGCATCAAACGCTGTCC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501286), mRNA.					
Rattus norvegicus	RefSeq	GI_62664226-S	ILMN_51020	PURA_PREDICTED	XM_226016.4	XM_226016.4		307498	109506446	XM_226016.4	Pura_predicted	XP_226016.2	ILMN_1365232	0002630092	S	860	CTCCGAGGAGATGAAGAAGATTCAAGAGAAGCAGAGGGAGAAGCGGGCCG	18	+	28923132-28923181	18p11	PREDICTED: Rattus norvegicus purine rich element binding protein A (predicted) (Pura_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640686	ILMN_49495	RGD1311308_PREDICTED	XM_218755.3	XM_218755.3		308701	62640686	XM_218755.3	RGD1311308_predicted	XP_218755.2	ILMN_1650812	0005910273	S	2791	CCCCAACGGCCACTGCCCCTCACCCAACAACGACAGAAACGACTTTCAAT				1q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A530046H20 (predicted) (RGD1311308_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955127	ILMN_57816	LGI1	NM_145769.2	NM_145769.2		252892	58696430	NM_145769.2	Lgi1	NP_665712.1	ILMN_1649734	0002970706	S	1447	GCTTGACCAGATTCATTGGCGACTCCAAAGTCATGAAGTGGGGCGGCTCC	1	+	242633807-242633856	1q53	Rattus norvegicus leucine-rich repeat LGI family, member 1 (Lgi1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence NAS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105310	MGC105310
Rattus norvegicus	RefSeq	GI_62664776	ILMN_295590	CMTM3_PREDICTED	XM_226200.3	XM_226200.3		291813	62664776	XM_226200.3	Cmtm3_predicted	XP_226200.1	ILMN_1649884	0002230347	S	1355	GCAGGACCACCAGTGACATGGGCCTTCTATCCCTTGGGGGCTGATACTGT	19	-	579635-579684	19p14	PREDICTED: Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 3 (predicted) (Cmtm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639595-S	ILMN_58909	LOC308556	XM_218633.3	XM_218633.3		308556	62639595	XM_218633.3	LOC308556	XP_218633.3	ILMN_1359452	0005340601	S	2848	GTGGCCCATTCTCCATGAAGCGATTTGGGCTACAACTTCCTGCTTTGGCC				1q22	PREDICTED: Rattus norvegicus hypothetical LOC308556 (LOC308556), mRNA.					
Rattus norvegicus	RefSeq	GI_62649017-S	ILMN_285860	PTPN3	XM_001055793.1	XM_001055793.1		362524	109476509	XM_001055793.1	Ptpn3	XP_001055793.1	ILMN_1368019	0005690164	S	2799	AGACTTCCTGGAGTTTGTGAAGTACGTGAGGTCCCTGCGGGTAGGCGGTG				5q24	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 3, transcript variant 2 (Ptpn3), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660150-S	ILMN_291084	RP1L1_PREDICTED	XM_001066326.1	XM_001066326.1		289463	109500309	XM_001066326.1	Rp1l1_predicted	XP_001066326.1	ILMN_1355490	0005080082	S	84	TAAGGAGACCCCTGCGGATGAGGGTAAGGAGACCCCTGCGGATGAGAGTA					PREDICTED: Rattus norvegicus retinitis pigmentosa 1-like 1 (predicted) (Rp1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654343-S	ILMN_52381	NME6	XM_343488.3	XM_343488.3		58964	109483979	XM_343488.3	Nme6	XP_343489.1	ILMN_1371074	0003290711	S	567	TCCTGTCGGTCCCTGAGGACTATGCAGTGTGCAGCCTTTCTCTTAGGGTC	8	+	114212186-114212235	8q32	PREDICTED: Rattus norvegicus expressed in non-metastatic cells 6, protein (nucleoside diphosphate kinase) (Nme6), mRNA.		The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650751-S	ILMN_268943	RGD1305497_PREDICTED	XR_009346.1	XR_009346.1		314173	109479453	XR_009346.1	RGD1305497_predicted		ILMN_1363141	0006510671	S	2898	CCTGCTAGCTATGGACAGGAATCCAGTATCTCCAGCATCCATTACTTCGA					PREDICTED: Rattus norvegicus similar to Expressed sequence C79407 (predicted) (RGD1305497_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649253-S	ILMN_65501	LOC298251	XM_233195.3	XM_233195.3		298251	62649253	XM_233195.3	LOC298251	XP_233195.3	ILMN_1359474	0001410347	S	1080	CAGAGCGGGCTCAGCCAATCCACATGCCAGTTCATTCGCAGCCGACTCTT					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10986 (LOC298251), mRNA.					
Rattus norvegicus	RefSeq	GI_13592096-S	ILMN_271866	STX3	NM_031124.1	NM_031124.1		81802	13592096	NM_031124.1	Stx3	NP_112386.1	ILMN_1364538	0002570619	S	952	GGCCTAAGGGGCTGCTGCACTGAAATCTTGGCCTGACCACTCTTGTCTCC	1	-	214554566-214554589:214556217-214556242	1q43	Rattus norvegicus syntaxin 3 (Stx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The initial attachment of a synaptic vesicle membrane to the presynaptic membrane, mediated by proteins protruding from the membrane of the synaptic vesicle and the target membrane [goid 16081] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IDA]; The directed movement of substances within a cell [goid 46907] [evidence TAS]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Interacting selectively with arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 50544] [evidence IDA]	Stx3a	Stx3a
Rattus norvegicus	RefSeq	GI_62665372-S	ILMN_271782	BANP_PREDICTED	XM_001077496.1	XM_001077496.1		292064	109508895	XM_001077496.1	Banp_predicted	XP_001077496.1	ILMN_1352893	0003940601	S	1964	CTGCTGGAAGGTGCCTCAGGGTTTGCGTCTCACTGCTGGTCTCCAAAGGA				19q12	PREDICTED: Rattus norvegicus Btg3 associated nuclear protein (predicted) (Banp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666226-S	ILMN_64050	RGD1563723_PREDICTED	XM_577943.2	XM_577943.2		502462	109509556	XM_577943.2	RGD1563723_predicted	XP_577943.2	ILMN_1365304	0006590017	S	105	CATCAAGAACCAATACCCGAGCTACTGGGACAGGCAGGAACTGGCTATGC	20	+	38281633-38281682	20q12	PREDICTED: Rattus norvegicus similar to putative homeobox protein (predicted) (RGD1563723_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643173-S	ILMN_266420	RGD1562936_PREDICTED	XR_007989.1	XR_007989.1		294835	109466219	XR_007989.1	RGD1562936_predicted		ILMN_1367539	0000510280	S	615	GGACCCGGCACTATGAGACACCTCTACAATGGACCCAATCAACCCTGACC				2q22	PREDICTED: Rattus norvegicus similar to Heat shock protein HSP 90-beta (HSP 84) (predicted) (RGD1562936_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865467-A	ILMN_294832	CCNA1	NM_001011949.1	NM_001011949.1		295052	58865467	NM_001011949.1	Ccna1	NP_001011949.1	ILMN_1376739	0006420368	S	1419	GCATAAAGCATGCCTCAGTATACCCCATCGACCGCAGCAAGCAATCAGGG	2	-	144275749-144275798	2q26	Rattus norvegicus cyclin A1 (Ccna1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655954-S	ILMN_265092	PANK3_PREDICTED	XM_001066086.1	XM_001066086.1		360511	109490511	XM_001066086.1	Pank3_predicted	XP_001066086.1	ILMN_1352816	0000510050	S	2022	AGAGTGAGTGGCATTCTGTGCTCTTTCTCTACCATGTATATCTCAGGCCC				10q12	PREDICTED: Rattus norvegicus pantothenate kinase 3 (predicted) (Pank3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662897	ILMN_280796	RGD1561238_PREDICTED	XM_001069254.1	XM_001069254.1		502091	109504344	XM_001069254.1	RGD1561238_predicted	XP_001069254.1	ILMN_1650671	0003170133	S	260	CCATGTGCAACAAGCCCATTGCTGGCCCCACGGAGACCTCACAGAGCATT				16q12.3	PREDICTED: Rattus norvegicus similar to ring finger protein 122 homolog (predicted) (RGD1561238_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39930466-S	ILMN_285876	GABRQ	NM_031733.1	NM_031733.1		65187	39930466	NM_031733.1	Gabrq	NP_113921.1	ILMN_1373771	0004150082	S	1795	TTTCAGCTCTTTAACCCTAACCGGGTCCCTAAGGTTGACAGGTGGTCCCG	X	+	158855848-158855897	Xq37	Rattus norvegicus gamma-aminobutyric acid (GABA) receptor, theta (Gabrq), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576310-S	ILMN_301469	OLR1514	NM_001000036.1	NM_001000036.1		287514	47576310	NM_001000036.1	Olr1514	NP_001000036.1	ILMN_1354241	0003450739	S	876	CCGTGACATGAAGGCGGCTTTGAAGAAACTCTTCCACTGCCCCTCTTCCT	10	-	61493206-61493255	10q24	Rattus norvegicus olfactory receptor 1514 (Olr1514), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1514; ratchr10-61507754-61506810_ORF	Olr1514; ratchr10-61507754-61506810_ORF
Rattus norvegicus	RefSeq	GI_62658268-S	ILMN_59465	RGD1308126_PREDICTED	XM_213563.3	XM_213563.3		287929	109493689	XM_213563.3	RGD1308126_predicted	XP_213563.1	ILMN_1349164	0007100044	S	869	CGGGTACCAGTATGGTTGCCTGGTGAGTCCACACCTCAGTATGGATGGGC	11	+	86940872-86940921	11q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610001E06 (predicted) (RGD1308126_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648981-S	ILMN_50986	LOC500457	XM_575821.1	XM_575821.1		500457	62648981	XM_575821.1	LOC500457	XP_575821.1	ILMN_1374905	0005270168	S	1117	CCAATTTCATGGGTCAGGGGCTGTATGCCTCCGTCACTGTTTGGATCCCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA C730036D15 (LOC500457), mRNA.					
Rattus norvegicus	RefSeq	GI_56961654-S	ILMN_299912	CMTM8	NM_198754.2	NM_198754.2		301045	56961654	NM_198754.2	Cmtm8	NP_942049.1	ILMN_1372621	0001400021	S	1052	TGGGGAGTGTTGTGGCTTCTAATGAATCCTGAGGTCTCCTGATGTCCTCC	8	-	119209148-119209197	8q32	Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 8 (Cmtm8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Cklfsf8; MGC108531	Cklfsf8; MGC108531
Rattus norvegicus	RefSeq	GI_62661338-S	ILMN_53158	LOC361034	XM_341309.2	XM_341309.2		361034	62661338	XM_341309.2	LOC361034	XP_341310.2	ILMN_1359529	0006200438	S	5035	CTCTGAGCAGTGGCGGGATCTTAGGGCTATCCAGGCAGGAACCAGAGTGA				15p14	PREDICTED: Rattus norvegicus similar to FLJ00128 protein (predicted) (LOC361034), mRNA.					
Rattus norvegicus	RefSeq	GI_34869033-S	ILMN_60075	LOC366392	XM_345546.1	XM_345546.1		366392	34869033	XM_345546.1	LOC366392	XP_345547.1	ILMN_1364022	0001190270	S	276	ACGCGTGTGCCACTTGCTGGTGCTGCAGATACAATGTTTGTTCATTCATC				5q31	PREDICTED: Rattus norvegicus similar to small nuclear ribonucleoparticle-associated protein (LOC366392), mRNA.					
Rattus norvegicus	RefSeq	GI_62645189-S	ILMN_286950	RGD1560313_PREDICTED	XM_001059499.1	XM_001059499.1		366069	109470059	XM_001059499.1	RGD1560313_predicted	XP_001059499.1	ILMN_1361198	0002850008	S	3136	GTTATGGGCCGAGTGGTCATGCTACAGGCATATACCAAGGGTTGGCTCGG				3q21	PREDICTED: Rattus norvegicus similar to myosin IIIB (predicted) (RGD1560313_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648580-S	ILMN_53566	LOC500398	XM_575757.1	XM_575757.1		500398	62648580	XM_575757.1	LOC500398	XP_575757.1	ILMN_1361017	0001660537	S	2935	GGCTAAGGTCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC500398), mRNA.					
Rattus norvegicus	RefSeq	GI_62645264-S	ILMN_50177	LOC499813	XM_580020.1	XM_580020.1		499813	62645264	XM_580020.1	LOC499813	XP_580020.1	ILMN_1365301	0006510465	S	232	CCCGCGTCCACCTGGAACTCTCCGAAAAAGACAAACGCGGTTCCTCCTAC					PREDICTED: Rattus norvegicus LOC499813 (LOC499813), mRNA.					
Rattus norvegicus	RefSeq	GI_11120697-S	ILMN_264378	PROM1	NM_021751.1	NM_021751.1		60357	11120697	NM_021751.1	Prom1	NP_068519.1	ILMN_1364705	0004480551	S	3339	GTGTGTACAGCAGGCACAACCTTCCTTGTGGATTTCCGTCTGCTCACTGC	14	+	72230123-72230172	14q21	Rattus norvegicus prominin 1 (Prom1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Prom	Prom
Rattus norvegicus	RefSeq	GI_62642705-S	ILMN_57197	LOC499501	XM_574825.1	XM_574825.1		499501	62642705	XM_574825.1	LOC499501	XP_574825.1	ILMN_1356833	0002190403	S	765	GCTTCAGCACAGTCCCAGATGGCTGGCGGTAAGGCTAGAAAGAACTCCGG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499501), mRNA.					
Rattus norvegicus	RefSeq	GI_62717868-S	ILMN_52787	LOC503299	XM_578835.1	XM_578835.1		503299	62717868	XM_578835.1	LOC503299	XP_578835.1	ILMN_1374992	0005130273	S	642	ACCCAGCACACCTTCAAGCTGGAGCAGCGTTTTGGGAGGGGGAACGTCGA					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC503299), mRNA.					
Rattus norvegicus	RefSeq	GI_62641025-S	ILMN_287406	TNFRSF19L_PREDICTED	XM_001067297.1	XM_001067297.1		361615	109462521	XM_001067297.1	Tnfrsf19l_predicted	XP_001067297.1	ILMN_1362111	0000770672	S	1218	ACGTCAGGGCGAGATTACCATCTTGTCTGTGGGCAGGTTCCGTGTGGCTC				1q32	PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 19-like (predicted) (Tnfrsf19l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27718418-S	ILMN_262673	LRRC10_PREDICTED	XM_001080952.1	XM_001080952.1		314848	109481982	XM_001080952.1	Lrrc10_predicted	XP_001080952.1	ILMN_1348962	0004810315	S	782	GGCAGAGGAGACCCCAGAACCTGACCGCAGAAAAACTAGGAGATCCGCAC				7q22	PREDICTED: Rattus norvegicus leucine-rich repeat-containing 10 (predicted) (Lrrc10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650011-S	ILMN_265213	CLCN6_PREDICTED	XM_001074014.1	XM_001074014.1		295586	109477693	XM_001074014.1	Clcn6_predicted	XP_001074014.1	ILMN_1371706	0006220215	S	2725	CTGGCCTCCACAGCCAGCACGAAGGCTCCCAGTCAACCATTTGCTCAGAT				5q36	PREDICTED: Rattus norvegicus chloride channel 6 (predicted) (Clcn6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657252-S	ILMN_52388	LOC287776	XM_221056.3	XM_221056.3		287776	62657252	XM_221056.3	LOC287776	XP_221056.3	ILMN_1369958	0000520072	S	3923	ACAGTTTACCAAAGACACATCGGGAAATACCCACAGCACCCTGATAGGCC				10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33887 (LOC287776), mRNA.					
Rattus norvegicus	RefSeq	GI_62641021-S	ILMN_65749	RAB6B	XM_574503.1	XM_574503.1		84379	62641021	XM_574503.1	Rab6b	XP_574503.1	ILMN_1358812	0005390193	S	886	CCCCTGCCCCTTTTTTCTGTGAGGATGTGGCAGGAAGCTCACTGCTTTGG				1q32	PREDICTED: Rattus norvegicus RAB6B, member RAS oncogene family (Rab6b), mRNA.					
Rattus norvegicus	RefSeq	GI_62641506	ILMN_266242	MS4A14	NM_181082.2	NM_181082.2		293743	31342056	NM_181082.2	Ms4a14	NP_851596.1	ILMN_1650854	0003850097	S	3324	ACCAACAGACCAGCGGTCAGAAGATCTGAGGCCAGATAATTACCCTGCGT	1	-	213809577-213809626	1q43	Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 14 (Ms4a14), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302088-S	ILMN_285486	GABRR3	NM_138897.1	NM_138897.1		192258	20302088	NM_138897.1	Gabrr3	NP_620252.1	ILMN_1372968	0000360403	S	1744	AGTTGGGCAGTTAAACTGGGATAGAGCCAGTCATGTCTCTTGGCCTCAAG	11	-	41667821-41667870	11q12	Rattus norvegicus gamma-aminobutyric acid (GABA) receptor, rho 3 (Gabrr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640891-S	ILMN_276957	SYTL2_PREDICTED	XM_001061661.1	XM_001061661.1		361604	109462401	XM_001061661.1	Sytl2_predicted	XP_001061661.1	ILMN_1356423	0006020176	S	2650	TCTGGGAGGTCTCCGGATCGGCTTTGGAACAGGGAAAAGCTACGGGACTG				1q32	PREDICTED: Rattus norvegicus synaptotagmin-like 2 (predicted) (Sytl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578040-S	ILMN_294386	OLR1057	NM_001000072.1	NM_001000072.1		288866	47578040	NM_001000072.1	Olr1057	NP_001000072.1	ILMN_1354021	0006940739	S	311	TCTTGGGAGGCACAGAGTTTTTCCTTTTGGCTACCATGTCCTATGACCGC	7	-	7913437-7913486	7q11	Rattus norvegicus olfactory receptor 1057 (Olr1057), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-7913797-7912859_ORF; Olr1057	ratchr7-7913797-7912859_ORF; Olr1057
Rattus norvegicus	RefSeq	GI_62647335-S	ILMN_288407	RGD1564615_PREDICTED	XR_007937.1	XR_007937.1		312371	109473563	XR_007937.1	RGD1564615_predicted		ILMN_1366177	0006520408	S	2101	AGTCTTCCTGAGCCACCCAACGGGAAGCCCTGAGTCCAGCAGCAGAAGCT				4q24	PREDICTED: Rattus norvegicus similar to mKIAA0241 protein (predicted) (RGD1564615_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653404-S	ILMN_51451	LOC503191	XM_578714.1	XM_578714.1		503191	62653404	XM_578714.1	LOC503191	XP_578714.1	ILMN_1360632	0004480112	S	1240	ACAGCATTCCTTCGGGACCTGAGAGTGAGGAGCCCTGCCACTTACCAGCT					PREDICTED: Rattus norvegicus similar to photoreceptor outer segment all-trans retinol dehydrogenase (LOC503191), mRNA.					
Rattus norvegicus	RefSeq	GI_62646319-S	ILMN_269849	LOC684302	XM_001069325.1	XM_001069325.1		684302	109471247	XM_001069325.1	LOC684302	XP_001069325.1	ILMN_1362095	0003140487	S	930	GTGTGTCTCCAGGAAGGCGATGAGAACCCCCGTGACTTTACCACCCTCTT					PREDICTED: Rattus norvegicus similar to Intraflagellar transport 52 homolog (Protein NGD5 homolog) (LOC684302), mRNA.					
Rattus norvegicus	RefSeq	GI_62657062-S	ILMN_63392	RGD1561189_PREDICTED	XM_340907.3	XM_340907.3		360632	109489031	XM_340907.3	RGD1561189_predicted	XP_340908.2	ILMN_1349217	0006130563	S	3048	CCAGTGGGATCCTGCTCTGAATCTCTGGACTCCTCCACTGTGAATTGGGG	10	-	90113448-90113497	10q32.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300010M03 (predicted) (RGD1561189_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078722-S	ILMN_299056	RGD1309522	NM_001013997.1	NM_001013997.1		306102	62078722	NM_001013997.1	RGD1309522	NP_001014019.1	ILMN_1356008	0001050435	S	1815	TGTGCAGAGGTGTTGGATGAAAACTACAAGTCCATCTCAGTGCAGCAGCC	15	+	82851792-82851841	15q21	Rattus norvegicus similar to hypothetical protein FLJ22624 (RGD1309522), mRNA.		The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62644354-S	ILMN_276332	RGD1306230	NM_001037655.1	NM_001037655.1		365902	83320097	NM_001037655.1	RGD1306230	NP_001032744.1	ILMN_1351779	0002470110	S	995	CCCACCTACTGTTGGGAGCAGTCTTCACAGAGGCCGAGAAGGCCAGGATA				2q34	Rattus norvegicus similar to hypothetical protein FLJ30525 (RGD1306230), mRNA.				MGC125117	MGC125117
Rattus norvegicus	RefSeq	GI_62661231-S	ILMN_67872	LOC501974	XM_577402.1	XM_577402.1		501974	62661231	XM_577402.1	LOC501974	XP_577402.1	ILMN_1349058	0005080156	S	955	GGGAACGGCCACTGCCGAGTGAAGACAATCCAATGGCAAATCACTGGTGT					PREDICTED: Rattus norvegicus similar to mKIAA0112 protein (LOC501974), mRNA.					
Rattus norvegicus	RefSeq	GI_62658175-S	ILMN_291587	B3GNT5	XM_001060426.1	XM_001060426.1		116740	109494692	XM_001060426.1	B3gnt5	XP_001060426.1	ILMN_1362313	0000540528	S	845	ATGTGTTCATGGGCCTCTGCGCCAATAAAGTGGGGGTCGTGCCACAGGAC				11q23	PREDICTED: Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 (B3gnt5), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]	Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide = UDP + N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide [goid 8457] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide = UDP + N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide [goid 8457] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lipopolysaccharide = UDP + N-acetyl-D-glucosaminyl-lipopolysaccharide [goid 8917] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lipopolysaccharide = UDP + N-acetyl-D-glucosaminyl-lipopolysaccharide [goid 8917] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643815-S	ILMN_263174	GATAD2B	NM_001024888.1	NM_001024888.1		310614	67846053	NM_001024888.1	Gatad2b	NP_001020059.1	ILMN_1358423	0003850600	S	2231	CAGTGAGGTGGGATCTTTGCCTCTGATAGAGGTCAGAATGAGGTCCTGGG	2	+	182615596-182615645	2q34	Rattus norvegicus GATA zinc finger domain containing 2B (Gatad2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	RGD1308533	RGD1308533
Rattus norvegicus	RefSeq	GI_62661799-S	ILMN_268366	RGD1304646_PREDICTED	XM_001073902.1	XM_001073902.1		306103	109502798	XM_001073902.1	RGD1304646_predicted	XP_001073902.1	ILMN_1351540	0002370735	S	2765	CTTCAACACCAGAAAATCCGCATGGCCCTTGTAGAACCACAGATACCAGG				15q21	PREDICTED: Rattus norvegicus similar to mitotic control protein dis3 homolog (predicted) (RGD1304646_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639254	ILMN_268420	RGD1562436_PREDICTED	XM_001075271.1	XM_001075271.1		365213	109461340	XM_001075271.1	RGD1562436_predicted	XP_001075271.1	ILMN_1650822	0000870131	S	274	CAGAGCCGGAAGCAAAGACTGGAGGATGAGGTGTCTGAGGAACTGGCCTC				1q21	PREDICTED: Rattus norvegicus similar to Nanos2 (predicted) (RGD1562436_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662893	ILMN_281756	ANGPT2	XM_001065522.1	XM_001065522.1		89805	109504354	XM_001065522.1	Angpt2	XP_001065522.1	ILMN_1650006	0001690097	S	1573	CTGCAAGTGTTCCCAGATGCTCACAGGAGGCTGGTGGTTCGACGCATGTG				16q12.5	PREDICTED: Rattus norvegicus angiopoietin 2 (Angpt2), mRNA.		Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655906-S	ILMN_61180	PDIA2_PREDICTED	XM_213263.4	XM_213263.4		287164	109487926	XM_213263.4	Pdia2_predicted	XP_213263.3	ILMN_1365839	0001980301	S	1409	CAGCTAACGAGCTGGAGGCCTTCTCTGTGCATGGCTATCCCACTCTCAAG	10	-	15463392-15463441	10q12	PREDICTED: Rattus norvegicus protein disulfide isomerase associated 2 (predicted) (Pdia2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655685-S	ILMN_281894	RGD1565166_PREDICTED	XM_001079046.1	XM_001079046.1		287059	109489705	XM_001079046.1	RGD1565166_predicted	XP_001079046.1	ILMN_1361904	0004210315	S	1027	TGGCAGAATACCACCCGGACAATGGAGAGCCAACTCCACCCACACGGTCA				10q12	PREDICTED: Rattus norvegicus similar to MGC45438 protein (predicted) (RGD1565166_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576328-S	ILMN_274751	OLR91	NM_001000139.1	NM_001000139.1		293232	47576328	NM_001000139.1	Olr91	NP_001000139.1	ILMN_1368225	0002470176	S	523	GTGATCGTTCATTCTTATTGTGAGCACATGGCTGTCGTCAAGCTGGCAGC	1	+	161076868-161076917	1q32	Rattus norvegicus olfactory receptor 91 (Olr91), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161156092-161157039_ORF; Olr91	ratchr1-161156092-161157039_ORF; Olr91
Rattus norvegicus	RefSeq	GI_62644764-S	ILMN_47816	LOC296582	XM_231081.3	XM_231081.3		296582	62644764	XM_231081.3	LOC296582	XP_231081.3	ILMN_1357270	0006900538	S	131	TTGGGCTGGCCAGTGGACCAGGTTCAAGGTGACAGGCCTCTGTGGCTCTG				3p13	PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC296582), mRNA.					
Rattus norvegicus	RefSeq	GI_16758733-S	ILMN_277334	TPT1	NM_053867.1	NM_053867.1		116646	16758733	NM_053867.1	Tpt1	NP_446319.1	ILMN_1351006	0006220133	S	493	CCAGATGGCATGGTTGCTCTACTGGACTACCGTGAAGATGGTGTGACTCC	15	+	56754289-56754338	15q11	Rattus norvegicus tumor protein, translationally-controlled 1 (Tpt1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence ISS]; A heterodimer of tubulins alpha and beta that constitutes the protomer for microtubule assembly [goid 45298] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105360	MGC105360
Rattus norvegicus	RefSeq	GI_34882675-S	ILMN_59106	LOC302005	XM_229530.2	XM_229530.2		302005	34882675	XM_229530.2	LOC302005	XP_229530.2	ILMN_1359874	0001980592	S	360	GGAAAACATGGCTCTAAGGACAACTGGAGGGGGGTGGTCCTAGCCGAGGT					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC302005), mRNA.					
Rattus norvegicus	RefSeq	GI_62640863-S	ILMN_264063	RGD1561783_PREDICTED	XM_001068254.1	XM_001068254.1		502348	109462256	XM_001068254.1	RGD1561783_predicted	XP_001068254.1	ILMN_1349288	0007040332	S	669	GCCAGGGGAGCCCAACAAAACCCACCTGGTCACATTCTTCCAGACAGACC				1q31	PREDICTED: Rattus norvegicus similar to StAR-related protein 1-4E (predicted) (RGD1561783_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660388-S	ILMN_282584	LOC498353	NM_001017499.1	NM_001017499.1		498353	62945357	NM_001017499.1	LOC498353	NP_001017499.1	ILMN_1372790	0003850280	S	2012	CTGAAGCCAGGAACCCAGGTGATGGTGCTGTCCACAAGACTCCTGAAGCC	14	+	36379028-36379045:36385945-36385976	14p11	Rattus norvegicus similar to Sec1 family domain containing protein 2 (Syntaxin binding protein 1-like 1) (Neuronal Sec1) (LOC498353), mRNA.		The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62650508-S	ILMN_286033	KCNF1	XM_001074279.1	XM_001074279.1		298908	109479180	XM_001074279.1	Kcnf1	XP_001074279.1	ILMN_1373423	0003390397	S	2324	GTCTCAGGCTGGTTACCCCAAGAGTGACTACTGCACACCCTAGTGCCAGG				6q16	PREDICTED: Rattus norvegicus potassium voltage-gated channel, subfamily F, member 1 (Kcnf1), mRNA.					
Rattus norvegicus	RefSeq	GI_62663799	ILMN_69455	LOC361269	XM_341552.2	XM_341552.2		361269	62663799	XM_341552.2	LOC361269	XP_341553.2	ILMN_1649825	0001240152	S	7583	TGCGTGTGGTCAGAGGCTTATGAACCGCATGTTTCAGAGGTTTTGCCACA				17q12.3	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 18 (LOC361269), mRNA.					
Rattus norvegicus	RefSeq	GI_58865443-A	ILMN_301755	DOC2G	NM_001011937.1	NM_001011937.1		293654	58865443	NM_001011937.1	Doc2g	NP_001011937.1	ILMN_1376478	0001230139	S	1144	GACCTGGGCACAGCTGATGATTTCATTGGTGGGGTGCAGCTGAGTGGCAG	1	+	206589131-206589158:206589230-206589251	1q42	Rattus norvegicus double C2, gamma (Doc2g), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663548	ILMN_274340	LOC684872	XM_001072267.1	XM_001072267.1		684872	109505822	XM_001072267.1	LOC684872	XP_001072267.1	ILMN_1649922	0006020184	S	72	GCAGTTCCCCGTGGGCCGCGTGCACCGTCTGTTGCGCAAGGGAAACTACT					PREDICTED: Rattus norvegicus similar to histone 1, H2af (LOC684872), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.22461	ILMN_291223	LETM1	NM_001005884.1	NM_001005884.1		305457	54400735	NM_001005884.1	Letm1	NP_001005884.1	ILMN_1530368	0006400112	S	2497	TCTGAGGTGATTTTTAGTGGCAAATCTAATATTTTGTCTGTGGAATAAAT	14	+	82677351-82677400	14q21	Rattus norvegicus leucine zipper-EF-hand containing transmembrane protein 1 (Letm1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC94466	MGC94466
Rattus norvegicus	RefSeq	GI_54400735-S	ILMN_291223	LETM1	NM_001005884.1	NM_001005884.1		305457	54400735	NM_001005884.1	Letm1	NP_001005884.1	ILMN_1372514	0007050673	S	2468	CCATGGTGACACGGCACACGAGTGATTGCTCTGAGGTGATTTTTAGTGGC	14	+	82677322-82677371	14q21	Rattus norvegicus leucine zipper-EF-hand containing transmembrane protein 1 (Letm1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC94466	MGC94466
Rattus norvegicus	RefSeq	GI_50657403-S	ILMN_297802	MUG2	NM_001002826.1	NM_001002826.1		408236	50657403	NM_001002826.1	Mug2	NP_001002826.1	ILMN_1374541	0006450132	S	3858	CACCATCCGTGTGTCAGGGGAAGGATGTGTGTATGCTCAGACTACGCTGA	4	+	158440803-158440842:158440995-158441004	4q42	Rattus norvegicus murinoglobulin 2 (Mug2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 17114] [evidence NAS];  [goid 17114] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655482-S	ILMN_49616	LOC367324	XM_346081.2	XM_346081.2		367324	62655482	XM_346081.2	LOC367324	XP_346082.2	ILMN_1360766	0001940519	S	572	AGAGATACCCATCAACATGAGCCGCGTTCGCACCAAGACCGTGAGGAAGG				9q36	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S17 (LOC367324), mRNA.					
Rattus norvegicus	RefSeq	GI_62656817-S	ILMN_283817	RGD1311234_PREDICTED	XM_001080761.1	XM_001080761.1		363656	109491348	XM_001080761.1	RGD1311234_predicted	XP_001080761.1	ILMN_1352775	0002650092	S	606	GGGAAGCTGGCGTCGATGTCCTGGGGCTGCCCCTGTTGGATCGATTCAGT				10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A830053O21 gene (predicted) (RGD1311234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786183-S	ILMN_284629	TSC22D3	NM_031345.1	NM_031345.1		83514	13786183	NM_031345.1	Tsc22d3	NP_112635.1	ILMN_1363488	0006400520	S	1775	TGATCCCTTCGGGGCCTGGAAAATGCACCCAGGAAGCTTGTGAAAGAAGG	X	-	128336530-128336579	Xq35	Rattus norvegicus TSC22 domain family, member 3 (Tsc22d3), mRNA.		Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEA]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence IEP]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]	Dsipi; Gilz	Dsipi; Gilz
Rattus norvegicus	RefSeq	GI_62658548-S	ILMN_56593	ZFP68_PREDICTED	XM_221977.3	XM_221977.3		304337	62658548	XM_221977.3	Zfp68_predicted	XP_221977.3	ILMN_1352183	0000610341	S	2014	CCCACATCTTGGTCATCACAGACAAGCAGAAGGCAGGGAAGCTGAAGAAG				12q11	PREDICTED: Rattus norvegicus zinc finger protein 68 (predicted) (Zfp68_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19526482-S	ILMN_269288	DNAJC5	NM_024161.2	NM_024161.2		79130	19526482	NM_024161.2	Dnajc5	NP_077075.1	ILMN_1359259	0005270064	S	518	GCTGTGGGAAGTGCAAGCCCAAGGCACCTGAGGGTGAAGAGACAGAATTC	3	+	170685007-170685056	3q43	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 5 (Dnajc5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	Csp	Csp
Rattus norvegicus	RefSeq	GI_62666391-S	ILMN_272954	WASF1	NM_001025114.1	NM_001025114.1		294568	68341972	NM_001025114.1	Wasf1	NP_001020285.1	ILMN_1349962	0005550131	S	2154	CGAGAATGGAATCTTGAAGGCAGCTCTGTCCGTGGTTGAGCCTTATTCCG	20|NW_047612.1	+	73303-73352		Rattus norvegicus WAS protein family, member 1 (Wasf1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109303	MGC109303
Rattus norvegicus	RefSeq	GI_62639674-S	ILMN_61858	NUP62	XM_218620.3	XM_218620.3		65274	62639674	XM_218620.3	Nup62	XP_218620.2	ILMN_1375012	0007040471	S	2565	CCTTCATGGGGTGGGCAGGCTGCAGGTACAAGAAGAAAGTCCTGTCTACC				1q22	PREDICTED: Rattus norvegicus nucleoporin 62 (Nup62), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 42059] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 42059] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of non-apoptotic programmed cell death, cell death resulting from activation of endogenous cellular processes, by a mechanism other than apoptosis [goid 43072] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence ISS]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the nuclear pore complex [goid 17056] [evidence IEA]; Functions to provide a physical support for the assembly of a multiprotein receptor signaling complex [goid 30159] [evidence ISS]; Functions to provide a physical support for the assembly of a multiprotein receptor signaling complex [goid 30159] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]; Interacting selectively with a phosphotyrosine-binding (PTB) domain of a protein [goid 51425] [evidence IEA]; Interacting selectively with a phosphotyrosine-binding (PTB) domain of a protein [goid 51425] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577026-S	ILMN_266621	OLR286	NM_001000554.1	NM_001000554.1		365384	47577026	NM_001000554.1	Olr286	NP_001000554.1	ILMN_1366754	0001240463	S	780	TGCCCGGCCTCATGCCATAAGCTCCTTCGACCTCAACAAGCTGGTATCTG	1	-	199965735-199965784	1q41	Rattus norvegicus olfactory receptor 286 (Olr286), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr286	Olr286
Rattus norvegicus	RefSeq	GI_58865507-A	ILMN_291518	SMARCD3	NM_001011966.1	NM_001011966.1		296732	58865507	NM_001011966.1	Smarcd3	NP_001011966.1	ILMN_1376683	0004850338	S	1473	TGTCAGCCGCTACTTCTACTGTAAGATCCAGCAGCGCAGGCAGGAGCTGG	4	+	5959351-5959375:5959615-5959639	4q11	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (Smarcd3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a muscle cell [goid 42692] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a muscle cell [goid 42692] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein binding [goid 43393] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein binding [goid 43393] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence IEA]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643280-S	ILMN_63193	LOC497755	XM_579728.1	XM_579728.1		497755	62643280	XM_579728.1	LOC497755	XP_579728.1	ILMN_1365572	0000770551	S	5654	CCATCTTCATGTCTCTTTGTCTGTGGTTTCTTACCCGGCAAGGATTCTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_198768 (LOC497755), mRNA.					
Rattus norvegicus	RefSeq	GI_62654071-S	ILMN_61889	LOC301105	XM_217306.3	XM_217306.3		301105	62654071	XM_217306.3	LOC301105	XP_217306.3	ILMN_1374295	0001190670	S	414	AGCAACCTTGCCAACACTGTAACAGAAGAGAGAGATGGTGCTGTCAAGGA					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (hnRNP-Q) (Synaptotagmin binding, cytoplasmic RNA interacting protein) (Liver regeneration-related protein LRRG077) (Ab2-339) (LOC301105), mRNA.					
Rattus norvegicus	RefSeq	GI_62656075-S	ILMN_69956	CSF2	XM_340799.3	XM_340799.3		116630	109488104	XM_340799.3	Csf2	XP_340800.3	ILMN_1365336	0004210670	S	75	TGTCACCCGGCCCTGGAAGCATGTAGATGCCATCAAAGAAGCTCTGAGCC	10	-	39667707-39667756	10q22	PREDICTED: Rattus norvegicus colony stimulating factor 2 (granulocyte-macrophage) (Csf2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The directed movement of fluid across epithelia [goid 42045] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence ISS]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence ISS]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence TAS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the granulocyte macrophage colony-stimulating factor receptor [goid 5129] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31340608-S	ILMN_287385	TRDN	NM_021666.2	NM_021666.2		59299	31340608	NM_021666.2	Trdn	NP_067698.1	ILMN_1365913	0000730746	S	3861	GGGTCTGTATCTCCAGGTTACCAGGAACCATCAAAACAAACAGCTCAGAG	1	-	24515061-24515110	1p11	Rattus norvegicus triadin (Trdn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]	The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence NAS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62655705-S	ILMN_283161	RGD1311451_PREDICTED	XM_001079214.1	XM_001079214.1		287063	109489721	XM_001079214.1	RGD1311451_predicted	XP_001079214.1	ILMN_1371972	0002030041	S	802	CCTGACCGGAACATTGATCTGACCCTGCGACTCAACCCCAAAGCCCAGAC				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110025F24 (predicted) (RGD1311451_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_7106412-S	ILMN_267048	SLC6A3	NM_012694.1	NM_012694.1		24898	7106412	NM_012694.1	Slc6a3	NP_036826.1	ILMN_1353130	0000540288	S	3221	GGCCTGTTGGCTTTGAGACTGTAGTATGGCAGAGAAGGCTCCGGTTTACC	1	-	30515249-30515298	1p11	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 (Slc6a3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]	The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence ISS]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence IEA]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence IDA]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence IEA]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence ISS]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence IEA]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence ISS]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence IEA]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]	Catalysis of the transfer of dopamine from one side of the membrane to the other. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 5329] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dopamine(out) + Na+(out) = dopamine(in) + Na+(in) [goid 5330] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dopamine(out) + Na+(out) = dopamine(in) + Na+(in) [goid 5330] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]	Dat1	Dat1
Rattus norvegicus	RefSeq	GI_19705476-S	ILMN_273152	RNF39	NM_134374.1	NM_134374.1		171387	19705476	NM_134374.1	Rnf39	NP_599201.1	ILMN_1361742	0002030524	S	1843	ATGGTGCTACCTCCCTTCTCAGGCTGGGGGCAACTCAGACATCCCAAACA	20	-	1697638-1697687	20p12	Rattus norvegicus ring finger protein 39 (Rnf39), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hzfw1; Lirf	Hzfw1; Lirf
Rattus norvegicus	RefSeq	GI_62644432-S	ILMN_52781	LOC502598	XM_578085.1	XM_578085.1		502598	62644432	XM_578085.1	LOC502598	XP_578085.1	ILMN_2039835	0004730370	S	247	GGATCCTCCTATGGTGTAACGTGGATGAACACAGTAGGTGCAGAGCTGCT					PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (LOC502598), mRNA.					
Rattus norvegicus	RefSeq	GI_9506564-S	ILMN_300955	EGR4	NM_019137.1	NM_019137.1		25129	9506564	NM_019137.1	Egr4	NP_062010.1	ILMN_1359043	0001240041	S	1861	GTCCTCTCGGTCCACCCACAGAGCAGGCGATACCTTAGGACTGAAGAGAG	4	-	119765384-119765433	4q34	Rattus norvegicus early growth response 4 (Egr4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	NGFI-C; Egr4l1	NGFI-C; Egr4l1
Rattus norvegicus	RefSeq	GI_62642839-S	ILMN_63627	MRPS36_PREDICTED	XM_215468.3	XM_215468.3		294696	109464324	XM_215468.3	Mrps36_predicted	XP_215468.3	ILMN_1373115	0003190053	S	690	CAGGCGGTCACTTGAATCTCCTACCTTATGTATCTTGGTCACTTCCCCAC	2	-	31531071-31531120	2q12	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S36 (predicted) (Mrps36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577786-S	ILMN_302578	OLR1236	NM_001000812.1	NM_001000812.1		405098	47577786	NM_001000812.1	Olr1236	NP_001000812.1	ILMN_1351514	0002810441	S	756	TGGTGCCTCAGCATTCATGTATCTTAAGCCTTCTCCTGTTGGATCAGAGG	8	+	40568091-40568140	8q22	Rattus norvegicus olfactory receptor 1236 (Olr1236), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1236	Olr1236
Rattus norvegicus	RefSeq	GI_62664444-S	ILMN_290163	PRRC1	NM_001033887.1	NM_001033887.1		291444	76559908	NM_001033887.1	Prrc1	NP_001029059.1	ILMN_1363078	0004920452	S	1354	AAACGTCACCCGGACTGATTGGCACCTGGCTTTCACTGGCATGTCTCGCC	18	+	53155326-53155375	18q12.1	Rattus norvegicus proline-rich coiled-coil 1 (Prrc1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]		Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51036670-S	ILMN_291255	SLC17A1	NM_133554.2	NM_133554.2		171080	51036670	NM_133554.2	Slc17a1	NP_598238.2	ILMN_1355503	0005290673	S	1534	CGGCTGTGAAGTTAGTAGAAGAGTGAGCACCTGAGAAGCATGAGGTCAGC					Rattus norvegicus solute carrier family 17 (sodium phosphate), member 1 (Slc17a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in) [goid 5436] [evidence TAS]; Catalysis of the transfer of phosphate (PO4 3-) ions from one side of a membrane to the other [goid 15114] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Napi-1	Napi-1
Rattus norvegicus	RefSeq	GI_62643390-S	ILMN_68359	PHF17_PREDICTED	XM_227074.4	XM_227074.4		310352	109464716	XM_227074.4	Phf17_predicted	XP_227074.4	ILMN_1359883	0000070746	S	4647	GTGAGTGTACGGCCTCTCACCATTTTAGGAGGCACCAGATTCATTTGCAC	2	+	128552132-128552181	2q26	PREDICTED: Rattus norvegicus PHD finger protein 17 (predicted) (Phf17_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.90858	ILMN_68359	PHF17_PREDICTED	XM_227074.4	XM_227074.4		310352	109464716	XM_227074.4	Phf17_predicted	XP_227074.4	ILMN_1530427	0005890102	S	4594	ATTTATAGAGGGATAACCTGTGAAGCCATAGAAAGAAAACCTAAATTGAT	2	+	128552079-128552128	2q26	PREDICTED: Rattus norvegicus PHD finger protein 17 (predicted) (Phf17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090364-S	ILMN_289280	WDR79	NM_001007610.1	NM_001007610.1		287432	56090364	NM_001007610.1	Wdr79	NP_001007611.1	ILMN_1364306	0003060528	S	1545	ATGTTTCCAGAGCCCACCAATAGCGGGGATGAAGGTGAGCCGGAGCTGGA	10	-	56381076-56381125	10q24	Rattus norvegicus WD repeat domain 79 (Wdr79), mRNA.				MGC94565	MGC94565
Rattus norvegicus	RefSeq	GI_62649381-S	ILMN_48953	LOC313484	XM_233356.3	XM_233356.3		313484	62649381	XM_233356.3	LOC313484	XP_233356.3	ILMN_1360972	0002320301	S	1371	CCCAGTGAGCCCAGCCAGCAGTCTACCCAGGAGGAGTCCAACTAAGCTGA				5q35	PREDICTED: Rattus norvegicus similar to doublesex and mab-3 related transcription factor 6 (LOC313484), mRNA.					
Rattus norvegicus	RefSeq	GI_62642067-S	ILMN_49498	LOC365426	XM_345007.2	XM_345007.2		365426	62642067	XM_345007.2	LOC365426	XP_345008.2	ILMN_1350499	0004570520	S	24	ATTAAGATACCCAGTATTGGCTCTTGCCGTGTGCTGGTGTTGGAGGACCC				1q43	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (LOC365426), mRNA.					
Rattus norvegicus	RefSeq	GI_31377488-A	ILMN_297669	DYNC1H1	NM_019226.2	NM_019226.2		29489	31377488	NM_019226.2	Dync1h1	NP_062099.2	ILMN_1376672	0003140497	S	15422	ATGGGCTGGGAAGGGTGAAGTGTGCGGTTTCCAAGGGCTGACCAAATGGC				6q32	Rattus norvegicus dynein cytoplasmic 1 heavy chain 1 (Dync1h1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IPI]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	Dnchc1; Dnch1	Dnchc1; Dnch1
Rattus norvegicus	RefSeq	GI_62662010-S	ILMN_272871	LOC686853	XM_001076022.1	XM_001076022.1		686853	109502849	XM_001076022.1	LOC686853	XP_001076022.1	ILMN_1371465	0001090128	S	112	GGCTTAGCCAGTGAGTACATAAAAAGAGCTAGAGCCATTCTGAGCGACGG					PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC686853), mRNA.					
Rattus norvegicus	RefSeq	GI_55741552-S	ILMN_302591	UXT	NM_001006982.1	NM_001006982.1		299313	55741552	NM_001006982.1	Uxt	NP_001006983.1	ILMN_1351410	0004610402	S	276	TGTGGCCCTGGGATACGGTTTTTTCCTGGAACTGACACTGGCCGAAGCTC	X	-	12626106-12626155	Xq12	Rattus norvegicus ubiquitously expressed transcript (Uxt), mRNA.	A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species [goid 930] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A multisubunit chaperone that acts to delivers unfolded proteins to cytosolic chaperonin. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits [goid 16272] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized [goid 51297] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized [goid 51297] [evidence ISS]	Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC105797	MGC105797
Rattus norvegicus	RefSeq	GI_61557416-S	ILMN_293160	SLC30A3	NM_001013243.1	NM_001013243.1		366568	61557416	NM_001013243.1	Slc30a3	NP_001013261.1	ILMN_1348982	0002370746	S	1436	ATAGCTGTAAGCGATTCAGGGGTGTGGGGCGTGTGGAAGCCCCCTGCCAT	6	+	25264567-25264616	6q14	Rattus norvegicus solute carrier family 30 (zinc transporter), member 3 (Slc30a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]	Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]	ZnT3	ZnT3
Rattus norvegicus	RefSeq	GI_62718640-S	ILMN_50702	LOC501443	XM_576853.1	XM_576853.1		501443	62718640	XM_576853.1	LOC501443	XP_576853.1	ILMN_1362868	0007000047	S	1867	CTGGGGAAAAGCCCCATGTTTGTGCCAGTTGTGGGAGGGCCTTCATCCAG					PREDICTED: Rattus norvegicus similar to Zinc finger protein 81 (HFZ20) (LOC501443), mRNA.					
Rattus norvegicus	RefSeq	GI_61556896-S	ILMN_278781	PHYHD1	NM_001013081.1	NM_001013081.1		296621	61556896	NM_001013081.1	Phyhd1	NP_001013099.1	ILMN_1367049	0005570041	S	1049	GGTCCACCAGACAGGGAGCCAAGAAGCAGAAATGACTGAGCAGGAGCCCA	3	+	9325398-9325447	3p12	Rattus norvegicus phytanoyl-CoA dioxygenase domain containing 1 (Phyhd1), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC109475	MGC109475
Rattus norvegicus	RefSeq	GI_62654207-S	ILMN_68384	RGD1311530_PREDICTED	XM_217247.4	XM_217247.4		300967	109483833	XM_217247.4	RGD1311530_predicted	XP_217247.3	ILMN_1358516	0006380403	S	1769	AATGGCGACTACCGAGACACTGGGATGGTCCTCGTGAACCCCTTCTGCCA	8	-	108526941-108526990	8q32	PREDICTED: Rattus norvegicus similar to mucin 7, salivary (predicted) (RGD1311530_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47059103-S	ILMN_279057	ATP6V1G2	NM_212490.1	NM_212490.1		368044	47059103	NM_212490.1	Atp6v1g2	NP_997655.1	ILMN_1366718	0007000332	S	1393	CCCCAAAGCTTGCTGCTTCCTGGAGCTGAAGAGATCTGTGACATTCATGC	20	-	3626380-3626429	20p12	Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit G2 (Atp6v1g2), mRNA.	A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen [goid 16471] [evidence TAS]; A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen [goid 16471] [evidence IEA]; A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen [goid 16471] [evidence ISS]; Penetrating at least one phospholipid bilayer of a synaptic vesicle membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30285] [evidence IEA]; Penetrating at least one phospholipid bilayer of a synaptic vesicle membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30285] [evidence ISS]	The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]	ATP6G	ATP6G
Rattus norvegicus	RefSeq	GI_62659026-S	ILMN_61540	LOC363928	XM_344116.2	XM_344116.2		363928	62659026	XM_344116.2	LOC363928	XP_344117.2	ILMN_1365623	0004070400	S	765	GCAGTGTTTGGCTCTGCGCCCCCTGAATGGGAAATGACTGGAGCAAGAAG				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC363928), mRNA.					
Rattus norvegicus	RefSeq	GI_62654238	ILMN_69788	RNU3IP2_PREDICTED	XM_343469.3	XM_343469.3		363134	109483851	XM_343469.3	Rnu3ip2_predicted	XP_343470.3	ILMN_1650328	0005420239	S	1426	TCCAGTGGTGGGGACTTCTTGGTGGCTGGAGTAGGACAGGAACACAGGCT	8	+	111630649-111630695:111630800-111630802	8q32	PREDICTED: Rattus norvegicus RNA, U3 small nucleolar interacting protein 2 (predicted) (Rnu3ip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662461	ILMN_277070	TSSK6_PREDICTED	XM_001071471.1	XM_001071471.1		290670	109504015	XM_001071471.1	Tssk6_predicted	XP_001071471.1	ILMN_1650029	0003940168	S	1372	CGCTGAGGCCGGCTGTTGGGTTCTGATTCCTCCTACACAACCCGATTGCT				16p14	PREDICTED: Rattus norvegicus testis-specific serine kinase 6 (predicted) (Tssk6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664366-S	ILMN_64044	LOC502159	XM_577615.1	XM_577615.1		502159	62664366	XM_577615.1	LOC502159	XP_577615.1	ILMN_1350982	0002480204	S	253	CCAGGAGTTCTTTGCCCTCCATACGTGGGATCAGTGAAGATGAGTGCAGC					PREDICTED: Rattus norvegicus similar to Spink5 protein (LOC502159), mRNA.					
Rattus norvegicus	RefSeq	GI_13929001-S	ILMN_300277	PFKM	NM_031715.1	NM_031715.1		65152	13929001	NM_031715.1	Pfkm	NP_113903.1	ILMN_1364760	0006040411	S	2407	TGATCATGGTCAGCTCACACCCTGGTAGACCTCAGCCCATGGCTTCTCAG	7	+	136845695-136845744	7q36	Rattus norvegicus phosphofructokinase, muscle (Pfkm), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence ISS]	A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence NAS]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis [goid 30388] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a fructose substrate molecule [goid 8443] [evidence NAS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a fructose substrate molecule [goid 8443] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a fructose substrate molecule [goid 8443] [evidence IMP]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	PFK-A	PFK-A
Rattus norvegicus	RefSeq	GI_62639548-A	ILMN_279540	KLK10	NM_001004100.1	NM_001004100.1		292850	51870930	NM_001004100.1	Klk10	NP_001004100.1	ILMN_1376968	0000520020	S	575	GCTCCAGGGTAACTCTCCTCAGCCAGAAGCAGTGTGAGACCTTCTACCCG	1	+	94213669-94213718	1q22	Rattus norvegicus kallikrein related-peptidase 10 (Klk10), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663085-S	ILMN_286921	ADAMTS16_PREDICTED	XM_001057527.1	XM_001057527.1		306664	109460632	XM_001057527.1	Adamts16_predicted	XP_001057527.1	ILMN_1370542	0000450504	S	3483	CCTGCATGAGAAACCCGAGACCTCCACAGCGTGCAACACCCATTTCTGCC				17p14	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16 (predicted) (Adamts16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646642-S	ILMN_273123	RGD1306404_PREDICTED	XM_001056833.1	XM_001056833.1		296733	109472918	XM_001056833.1	RGD1306404_predicted	XP_001056833.1	ILMN_1362341	0004920471	S	3522	CTCAGTGAGGAACTGTACCACCGTTGTCGCCTCAGCAACTTGGAGGGGCT				4q11	PREDICTED: Rattus norvegicus similar to mKIAA1402 protein (predicted) (RGD1306404_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948473-S	ILMN_275403	SYAP1	NM_001004253.1	NM_001004253.1		302678	51948473	NM_001004253.1	Syap1	NP_001004253.1	ILMN_1364936	0000510369	S	1144	CTGGGAAAAGGAGCTACAACAGGAGCTGCAGGAATATGAAGTGGTAGCGG	X	+	52580407-52580456	Xq21	Rattus norvegicus synapse associated protein 1 (Syap1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]			MGC94115	MGC94115
Rattus norvegicus	RefSeq	GI_62656675-S	ILMN_62783	RASL10B_PREDICTED	XM_220782.3	XM_220782.3		303382	109488689	XM_220782.3	Rasl10b_predicted	XP_220782.3	ILMN_1357062	0003170333	S	762	TTGGTGCGCAAGACCTGGAAGTGCGGCTACGTGGAGTGCTCGGCCAAGTA	10	+	71502732-71502781	10q26	PREDICTED: Rattus norvegicus RAS-like, family 10, member B (predicted) (Rasl10b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33414514-S	ILMN_295197	PXK	NM_182821.1	NM_182821.1		306203	33414514	NM_182821.1	Pxk	NP_877973.1	ILMN_1355525	0002470086	S	2465	ACTGTCTCAGTCCTCAGCAATTAAATCCAGTGGGGGTAGAGGGAGGGCCA	15	-	18744984-18745033	15p14	Rattus norvegicus PX domain containing serine/threonine kinase (Pxk), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	MGC114238	MGC114238
Rattus norvegicus	RefSeq	GI_62644991-S	ILMN_59190	RGD1565012_PREDICTED	XM_231163.3	XM_231163.3		311882	109468069	XM_231163.3	RGD1565012_predicted	XP_231163.3	ILMN_1368875	0000070546	S	1044	CCTGGACAGCTTCAGGCATTTTCACTGGAGGAGCTCGGAAGACCGTGCTG	3	+	13851960-13852009	3p11	PREDICTED: Rattus norvegicus similar to beta-1,3-N-acetylglucosaminyltransferase bGnT-5 (predicted) (RGD1565012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090338	ILMN_300225	FAM100A	NM_001007668.1	NM_001007668.1		302941	56090338	NM_001007668.1	Fam100a	NP_001007669.1	ILMN_1650262	0000070358	S	1048	CCTAGTTTATGGGGCAGCTGGACTTTGCATGTTAGAGTGAGCCCCAAGCC	10	+	10817837-10817886	10q12	Rattus norvegicus family with sequence similarity 100, member A (Fam100a), mRNA.				MGC95014	MGC95014
Rattus norvegicus	RefSeq	GI_34854768	ILMN_279233	LOC682835	XM_001063328.1	XM_001063328.1		682835	109461000	XM_001063328.1	LOC682835	XP_001063328.1	ILMN_1649789	0002850746	S	2401	GTGGCGGTAGAGATTTTCTCCATCCTGGCCTCCACTGCTGGACTTTTGGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC682835), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54262188-S	ILMN_269108	RTN2	NM_201562.2	NM_201562.2		308410	54262188	NM_201562.2	Rtn2	NP_963856.1	ILMN_1350737	0001340088	S	1771	CGCGGAGCCTGCTGGGACTTGTAGTTGAATAGTGAGGACGCTGCTCTGCA	1	+	78660113-78660162	1q21	Rattus norvegicus reticulon 2 (Z-band associated protein) (Rtn2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]			RTN2-B	RTN2-B
Rattus norvegicus	RefSeq	GI_62666642-S	ILMN_64762	LOC501527	XM_576928.1	XM_576928.1		501527	62666642	XM_576928.1	LOC501527	XP_576928.1	ILMN_1368479	0006650347	S	737	CTGGGCAGCACCGCACGAGCGAACCTGAGCCTCGGAACCACAAAAATAGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501527), mRNA.					
Rattus norvegicus	RefSeq	GI_62659097-S	ILMN_266195	LOC498198	XM_001070575.1	XM_001070575.1		498198	109496571	XM_001070575.1	LOC498198	XP_001070575.1	ILMN_1368287	0006520358	S	974	ACCCTGACAGCCAGAAGAAACTGCAGGAGGAAATCGACAGGGCTCTACCC					PREDICTED: Rattus norvegicus similar to Cytochrome P450 3A2 (CYPIIIA2) (P450-PCN2) (P450/6-beta-A) (Testosterone 6-beta-hydroxylase) (LOC498198), mRNA.					
Rattus norvegicus	RefSeq	GI_62658773	ILMN_271702	GM52	NM_001014771.1	NM_001014771.1		288602	62821769	NM_001014771.1	Gm52	NP_001014771.1	ILMN_1650878	0004920132	S	1299	CCTCGGGTTAGGCGCGGCTGGGATCGCCACCTCAACCATGTATTTCCAAA	12	+	23221769-23221818	12q12	Rattus norvegicus envelope glycoprotein syncytin-A (Gm52), mRNA.	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres [goid 19028] [evidence IEA]; The lipid bilayer and associated glycoproteins that surround many types of virus particle [goid 19031] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Gm52	Gm52
Rattus norvegicus	RefSeq	GI_16758311-S	ILMN_276541	SFRP4	NM_053544.1	NM_053544.1		89803	16758311	NM_053544.1	Sfrp4	NP_445996.1	ILMN_1352716	0004760438	S	1858	GGTTAATCCATCAAGAGAGCTGGGCCATCCCACTCCAGGGCATCGTAAGG				17q11	Rattus norvegicus secreted frizzled-related protein 4 (Sfrp4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence TAS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649593-S	ILMN_263465	NT5C1A_PREDICTED	XM_001055008.1	XM_001055008.1		313574	109477180	XM_001055008.1	Nt5c1a_predicted	XP_001055008.1	ILMN_1362883	0006100451	S	863	CTCCAAAGGCCTGCGGCTGGAGTGCCCGATTCGTACTTACTTGGTGACAG				5q36	PREDICTED: Rattus norvegicus 5'-nucleotidase, cytosolic IA (predicted) (Nt5c1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665951-S	ILMN_269010	SPOCK2_PREDICTED	XM_001055146.1	XM_001055146.1		361840	109510079	XM_001055146.1	Spock2_predicted	XP_001055146.1	ILMN_1369983	0001980546	S	2111	GAGGCAGGACCTGTTCACACAACAAGGCTTACCCTTCTGCTGACATCCAG				20q11	PREDICTED: Rattus norvegicus sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 (predicted), transcript variant 2 (Spock2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651737-S	ILMN_266934	MBD3_PREDICTED	XM_001076468.1	XM_001076468.1		362834	109481569	XM_001076468.1	Mbd3_predicted	XP_001076468.1	ILMN_1359297	0001170504	S	905	ATGACGACATCAGGAAGCAGGAGGAGCTGGTACAGCAGGTGCGCAAGCGC				7q11	PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 3 (predicted) (Mbd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663701-S	ILMN_63856	TM7SF1_PREDICTED	XM_237907.3	XM_237907.3		289287	62663701	XM_237907.3	Tm7sf1_predicted	XP_237907.2	ILMN_1355889	0005290441	S	2530	GCCCTGTACCACATCTCTTTGCCTTTGAGTAAACTTCTGGGTTGCAGGCC				17q12.1	PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 1 (predicted) (Tm7sf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789298-S	ILMN_263499	XPO1	NM_053490.1	NM_053490.1		85252	29789298	NM_053490.1	Xpo1	NP_445942.1	ILMN_1353641	0004120133	S	2926	GACTACGTGGCTAATCTCCTTAAGTCTGCGTTCCCTCACCTACAAGATGC	14	+	103976632-103976678:103977083-103977085	14q22	Rattus norvegicus exportin 1, CRM1 homolog (yeast) (Xpo1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Stacks of endoplasmic reticulum (ER) membranes containing a high density of nuclear pores, thought to form from excess nuclear membrane components, that have been described in a number of different cells. Annulate lamellar membranes are continuous with and embedded within the ER [goid 5642] [evidence ISS]; Stacks of endoplasmic reticulum (ER) membranes containing a high density of nuclear pores, thought to form from excess nuclear membrane components, that have been described in a number of different cells. Annulate lamellar membranes are continuous with and embedded within the ER [goid 5642] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence IDA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence ISS]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_39930504-S	ILMN_263434	LOC684988	XM_001053043.1	XM_001053043.1		684988	109467935	XM_001053043.1	LOC684988	XP_001053043.1	ILMN_1351503	0006980373	S	471	GCTCTGGTGGCATAAATGCTGTTGCGTACACAAGCAATAAAATCACTTTG	3	-	5696561-5696596:5696597-5696610	3p12	PREDICTED: Rattus norvegicus similar to ribosomal protein S13 (LOC684988), mRNA.					
Rattus norvegicus	RefSeq	GI_9506896-S	ILMN_270468	MGAT3	NM_019239.1	NM_019239.1		29582	9506896	NM_019239.1	Mgat3	NP_062112.1	ILMN_1351382	0003850669	S	2387	ACTCTAGGAGTCTAGTTCTCGGGGTGGGACAGGAGCTGGACACCATGTGG	7	+	118456834-118456883	7q34	Rattus norvegicus mannoside acetyl glucosaminyltransferase 3 (Mgat3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R [goid 3830] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658266-S	ILMN_59387	RGD1566036_PREDICTED	XM_573330.2	XM_573330.2		498119	109493687	XM_573330.2	RGD1566036_predicted	XP_573330.2	ILMN_1363709	0006290692	S	762	CACAGAAGATCCTGGTGGGCCTAGTGAGTGTGAAGATGATGAGGGAGCCC	11	-	86897581-86897630	11q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310008H04 (predicted) (RGD1566036_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577324-S	ILMN_262505	OLR417	NM_001000388.1	NM_001000388.1		296679	47577324	NM_001000388.1	Olr417	NP_001000388.1	ILMN_1362548	0003170687	S	551	CCAGTGCTCTGCTGAAACTTGCCTGTTCTGACACCCACATTAATGAGCTG	3	+	16421895-16421944	3q11	Rattus norvegicus olfactory receptor 417 (Olr417), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Olr417	Olr417
Rattus norvegicus	RefSeq	GI_62667463-S	ILMN_64053	GPR112_PREDICTED	XM_229201.4	XM_229201.4		302860	109511262	XM_229201.4	Gpr112_predicted	XP_229201.4	ILMN_1351364	0002360112	S	8288	ACTTTCTGCTCGTGTCTTTGACTTGGATGGGCCTGGAGGCAGTCCACATG	X	+	141597371-141597420	Xq36	PREDICTED: Rattus norvegicus G protein-coupled receptor 112 (predicted) (Gpr112_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652208-S	ILMN_57678	LOC500840	XM_580127.1	XM_580127.1		500840	62652208	XM_580127.1	LOC500840	XP_580127.1	ILMN_1352296	0001450059	S	96	GTCAGCTCGTGGCTCCTGAAGACTGATGTTCTCTCCCAAACACTGGTCAC					PREDICTED: Rattus norvegicus LOC500840 (LOC500840), mRNA.					
Rattus norvegicus	RefSeq	GI_62665578-S	ILMN_278219	RGD1559984_PREDICTED	XM_001075529.1	XM_001075529.1		499399	109509710	XM_001075529.1	RGD1559984_predicted	XP_001075529.1	ILMN_1348900	0006100603	S	417	AAGAAGAGGGCGCATCTGTGTTTGCCTGGATTTGGGAAGCACTCAGACTC				20p12	PREDICTED: Rattus norvegicus RGD1559984 (predicted) (RGD1559984_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948485-S	ILMN_271690	PNKP	NM_001004259.1	NM_001004259.1		308576	51948485	NM_001004259.1	Pnkp	NP_001004259.1	ILMN_1371479	0004200270	S	1294	CCGCACTGAGGCAGGGGAAGCAAGTCGTGATTGATAACACCAACCCAGAC	1	+	95334871-95334920	1q22	Rattus norvegicus polynucleotide kinase 3'-phosphatase (Pnkp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence ISS]; The series of events required to receive a stimulus indicating DNA damage has occurred and convert it to a molecular signal [goid 42769] [evidence ISS]; The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside [goid 46939] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside monophosphate = ADP + nucleoside diphosphate [goid 19201] [evidence ISS]; Catalysis of the reaction: 3'-phosphopolynucleotide + H2O = a polynucleotide + phosphate. Hydrolyzes the free 3'-phosphate resulting from single strand breaks in DNA due to oxidative damage [goid 46403] [evidence ISS]; Catalysis of the reaction: ATP + 5'-dephospho-DNA = ADP + 5'-phospho-DNA [goid 46404] [evidence ISS]	MGC94448	MGC94448
Rattus norvegicus	RefSeq	GI_11067444-S	ILMN_301227	AKAP14	NM_021703.1	NM_021703.1		60332	11067444	NM_021703.1	Akap14	NP_067735.1	ILMN_1363467	0001780253	S	1554	CAGTGCCAACGCCTACTTCACCATCAAGTTCAACAAGAGCAAACCTGCGG	X	+	7754241-7754289:7758380-7758380	Xq12	Rattus norvegicus A kinase (PRKA) anchor protein 14 (Akap14), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62650931	ILMN_293597	LOC680519	XM_001055856.1	XM_001055856.1		680519	109478402	XM_001055856.1	LOC680519	XP_001055856.1	ILMN_1651153	0002970176	S	2153	AGCAGCTCAGAGTCCTCCAGTGAAGCGAGCAACTCCTCCGACAGCAGTCA	6	+	103730006-103730055	6q24	PREDICTED: Rattus norvegicus similar to CG12750-PA, transcript variant 1 (LOC680519), mRNA.		The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]; The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393512-S	ILMN_277781	GZMK	NM_017119.1	NM_017119.1		29165	8393512	NM_017119.1	Gzmk	NP_058815.1	ILMN_1369266	0004570577	S	678	CCATGCCCTAGTCTCTGGGGGCTATAAATGTGGCATCTCCAACAAGCCTG	2	-	44589449-44589498	2q14	Rattus norvegicus granzyme K (Gzmk), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62643497-S	ILMN_50427	LOC310445	XM_227179.3	XM_227179.3		310445	62643497	XM_227179.3	LOC310445	XP_227179.3	ILMN_1372719	0006980075	S	3112	AACAGGGTCTCCAGGTCTCTACGAAGCAGAAAGTGTCCCCATGGGACCTG					PREDICTED: Rattus norvegicus similar to mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like (LOC310445), mRNA.					
Rattus norvegicus	RefSeq	GI_62651493-S	ILMN_66874	LOC503070	XM_578590.1	XM_578590.1		503070	62651493	XM_578590.1	LOC503070	XP_578590.1	ILMN_1351655	0000870128	S	102	GTTACCACAATCTGTGTCCAGTGTGAGGTGCAGCTGGTGGAATCTGGGGG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC503070), mRNA.					
Rattus norvegicus	RefSeq	GI_62661264-S	ILMN_48490	SOCS4_PREDICTED	XM_223934.4	XM_223934.4		305828	109501531	XM_223934.4	Socs4_predicted	XP_223934.3	ILMN_1371403	0002810008	S	1452	CCACTCCGTTAATCCGGACTTTCCCCTTTTCCTTGCAGCACATTTGCAGG	15	+	23242848-23242897	15p14	PREDICTED: Rattus norvegicus suppressor of cytokine signaling 4 (predicted) (Socs4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718658-S	ILMN_52018	LOC501444	XM_576855.1	XM_576855.1		501444	62718658	XM_576855.1	LOC501444	XP_576855.1	ILMN_1354806	0002060463	S	527	TTTTCCAGGGGACCTCCGGCTGCCATCATGTGTTGTGGTGACACCAACTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501444), mRNA.					
Rattus norvegicus	RefSeq	GI_62662510-S	ILMN_283035	LOC686275	XM_001073242.1	XM_001073242.1		686275	109504061	XM_001073242.1	LOC686275	XP_001073242.1	ILMN_1364154	0000070537	S	847	ATGACATCAAGAAGGTGGTGAAGCAGGTGGCCGAGGGCCCACTAAAGGGC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC686275), mRNA.					
Rattus norvegicus	RefSeq	GI_62650441-S	ILMN_279454	RGD1561716_PREDICTED	XR_008727.1	XR_008727.1		500624	109479107	XR_008727.1	RGD1561716_predicted		ILMN_1364328	0004010044	S	299	CAACAAGAGCAGAAGGACAGGGTCTGGACGGCTAATGCCTTGGGTGCTGG				6q14	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648552-S	ILMN_275663	ADHFE1	NM_001025423.1	NM_001025423.1		362474	70794741	NM_001025423.1	Adhfe1	NP_001020594.1	ILMN_1350285	0004920575	S	1451	ATCGCCATCGGCCCTTACAACGGAAGCTACGAGAGCAGAAGTTGGTCAGG	5	-	9277286-9277335	5q11	Rattus norvegicus alcohol dehydrogenase, iron containing, 1 (Adhfe1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of molecular hydrogen (H2) into, out of, within or between cells [goid 15993] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: (S)-3-hydroxybutanoate + 2-oxoglutarate = acetoacetate + (R)-2-hydroxyglutarate [goid 47988] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665602-S	ILMN_57341	LOC502412	XM_577893.1	XM_577893.1		502412	62665602	XM_577893.1	LOC502412	XP_577893.1	ILMN_1370010	0007050600	S	1045	GACGGAAGGATGGAGGACTTCAGACAAAGGATGAGGGATCGTCAGAGCGG				20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2300002M23 (LOC502412), mRNA.					
Rattus norvegicus	RefSeq	GI_62649455-S	ILMN_293753	NSUN4_PREDICTED	XM_001070636.1	XM_001070636.1		298426	109477055	XM_001070636.1	Nsun4_predicted	XP_001070636.1	ILMN_1352671	0002680128	S	1222	GATGACTCCATCAGAGGCATTGTAACAGGCTGGCGGCAGGTGTGTCCCAG				5q36	PREDICTED: Rattus norvegicus NOL1/NOP2/Sun domain family, member 4 (predicted) (Nsun4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12248186-S	ILMN_291234	P2RY12	NM_022800.1	NM_022800.1		64803	12248186	NM_022800.1	P2ry12	NP_073637.1	ILMN_1353994	0004760433	S	966	TCTGTTCTACGTGAAGGAGAGCACCCTGTGGCTGACGTCCTTGAACGCCT	2	-	148611273-148611322	2q31	Rattus norvegicus purinergic receptor P2Y, G-protein coupled 12 (P2ry12), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence NAS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 43270] [evidence ISS]; A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B, which occurs as a result of a single trigger reaction or compound [goid 43491] [evidence IMP]	Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence ISS]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IEA];  [goid 1621] [evidence IDA];  [goid 1621] [evidence ISS];  [goid 1621] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	P2y12	P2y12
Rattus norvegicus	RefSeq	GI_62646256-S	ILMN_267970	RGD1563145_PREDICTED	XM_001068099.1	XM_001068099.1		499937	109471223	XM_001068099.1	RGD1563145_predicted	XP_001068099.1	ILMN_1353299	0000430136	S	122	ACCAGCGGGCAAGCAAAATCCGCAGACGCAAGGCCCAGCAGGCGAAAGCT				3q42	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L13 (predicted) (RGD1563145_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621123-S	ILMN_296601	C1GALT1	NM_022950.1	NM_022950.1		65044	12621123	NM_022950.1	C1galt1	NP_075239.1	ILMN_1362982	0001500463	S	1233	AGGCAACCCCTGAAAGCAGACCAGGAGTGGACTGTGGTCAAATGGTCTAC	4	+	32933782-32933794:32933795-32933831	4q21	Rattus norvegicus core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 (C1galt1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the addition of a galactosyl residue to a non-reducing O-linked N-acetylgalactosamine residue in an O-glycan [goid 16263] [evidence ISS]; Catalysis of the addition of a galactosyl residue to a non-reducing O-linked N-acetylgalactosamine residue in an O-glycan [goid 16263] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981527-S	ILMN_277503	MAPK10	NM_012806.1	NM_012806.1		25272	6981527	NM_012806.1	Mapk10	NP_036938.1	ILMN_1364626	0002810372	S	1481	AAGGCCAGCCCTCACCTTCAGGTGCAGCAGTGAACAGCAGTGAGAGTCTC	14	+	7998745-7998764:8010199-8010228	14p22	Rattus norvegicus mitogen activated protein kinase 10 (Mapk10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Jnk3; SAPb; SAPKC; Serk2	Jnk3; SAPb; SAPKC; Serk2
Rattus norvegicus	RefSeq	GI_62653583-S	ILMN_289266	LOC683334	XM_001062351.1	XM_001062351.1		683334	109484563	XM_001062351.1	LOC683334	XP_001062351.1	ILMN_1358047	0004670133	S	979	TGCAGCAAGAAGCAGGCAGCCACATAAAGGGAAAAGCTGAAGGTTCCCAG					PREDICTED: Rattus norvegicus hypothetical protein LOC683334 (LOC683334), mRNA.					
Rattus norvegicus	RefSeq	GI_62647631-S	ILMN_52706	LOC500207	XM_575559.1	XM_575559.1		500207	62647631	XM_575559.1	LOC500207	XP_575559.1	ILMN_1370501	0004730438	S	105	TGGTCTATACAAAGACTAAACATCCTGAGGGCCCAGGAGCGGCAGGACCC					PREDICTED: Rattus norvegicus similar to LRRGT00008 (LOC500207), mRNA.					
Rattus norvegicus	RefSeq	GI_62644172-S	ILMN_288362	GSTM4	NM_001024304.1	NM_001024304.1		499689	66730312	NM_001024304.1	Gstm4	NP_001019475.1	ILMN_1374123	0000430040	S	731	CTTGGGGCAATAAGTAGGGCTTTGACTCGGGCAGGAAGTGGGAACCTGGG	2	-	203606370-203606403:203606404-203606419	2q34	Rattus norvegicus glutathione S-transferase, mu 4 (Gstm4), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving nitrobenzene (nitrobenzol), a derivative of benzene with an NO2 group attached to the ring. It is a yellow aromatic liquid used in perfumery and manufactured in large quantities in the preparation of aniline [goid 18916] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 42178] [evidence ISS]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659737-S	ILMN_66718	LY9_PREDICTED	XM_222892.3	XM_222892.3		289227	62659737	XM_222892.3	Ly9_predicted	XP_222892.3	ILMN_1374815	0001340605	S	2431	TGTCATCCTCCTTACCTCATGAGCCCGTGTACAGGTCAGGCAGAGTCTCC				13q24	PREDICTED: Rattus norvegicus lymphocyte antigen 9 (predicted) (Ly9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657050-S	ILMN_62694	GCN5L2_PREDICTED	XM_239340.4	XM_239340.4		303539	109489017	XM_239340.4	Gcn5l2_predicted	XP_239340.4	ILMN_1369542	0003170110	S	2774	GCCCCTTGTAGAATGTCTGGTGGCCAGGGAATGAACTGCTAGTCCTTACC	10	-	89642248-89642297	10q32.1	PREDICTED: Rattus norvegicus GCN5 general control of amino acid synthesis-like 2 (yeast) (predicted) (Gcn5l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648339-S	ILMN_64005	RGD1562899_PREDICTED	XM_575724.2	XM_575724.2		500366	109472844	XM_575724.2	RGD1562899_predicted	XP_575724.1	ILMN_1351967	0003940609	S	502	GCCATCAGGGGCGTTGTCCTGGAGACTGTCAGAAATGGGATGGTGGAGAG	4	+	184636920-184636969	4q44	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210417D09 (predicted) (RGD1562899_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27662899-S	ILMN_268170	CHST12	NM_001037775.1	NM_001037775.1		304322	83649692	NM_001037775.1	Chst12	NP_001032864.1	ILMN_1351631	0004200048	S	1095	CAGATAGACTACGACTTCGTGGGGAAGCTGGAGACCCTGGATGAGGATGC	12	-	14577911-14577960	12q11	Rattus norvegicus carbohydrate sulfotransferase 12 (Chst12), mRNA.		The chemical reactions and pathways resulting in the formation of dermatan sulfate, any glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units [goid 30208] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 4'-sulfate [goid 47756] [evidence ISS]	MGC112823	MGC112823
Rattus norvegicus	RefSeq	GI_62655817-S	ILMN_289608	CCNF	XM_001054372.1	XM_001054372.1		117524	109490291	XM_001054372.1	Ccnf	XP_001054372.1	ILMN_1352346	0001240440	S	3290	TCATGTGACCTCAGGAAAAGGAAACTGATGACCGCCCCTTGGTTCTAGCC				10q12	PREDICTED: Rattus norvegicus cyclin F (Ccnf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state [goid 320] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656825-S	ILMN_287978	LOC287569	XR_005445.1	XR_005445.1		287569	109488656	XR_005445.1	LOC287569		ILMN_1361795	0002190040	S	3671	GCAGGGAGGGAATCAGACCACTGAGGGCAAGGTCAGCATCAGTAGATGAG	10	-	71350205-71350254	10q26	PREDICTED: Rattus norvegicus similar to FLJ34922 protein (LOC287569), misc RNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The process by which a virus reproduces. Usually, this is by infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle [goid 16032] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653294-S	ILMN_270516	PIN1_PREDICTED	XM_001077069.1	XM_001077069.1		298696	109484347	XM_001077069.1	Pin1_predicted	XP_001077069.1	ILMN_1368732	0007050195	S	799	GTTCCTAAAATGACTGGGAGGGGGGCTCTGAGAAGGGGACTCTGAGCATC				8q13	PREDICTED: Rattus norvegicus protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1 (predicted) (Pin1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645193-S	ILMN_290161	LOC499806	NM_001024311.1	NM_001024311.1		499806	66730304	NM_001024311.1	LOC499806	NP_001019482.1	ILMN_1350096	0002680685	S	1254	GAGGACAGCAACAACGAAGACGACGAAGGCCCCGCTAAGAAGGAGACTCG	3	+	52757396-52757445	3q21	Rattus norvegicus similar to RIKEN cDNA 4933404M02 (LOC499806), mRNA.					
Rattus norvegicus	RefSeq	GI_62640684-S	ILMN_49417	TJP1_PREDICTED	XM_218747.4	XM_218747.4		292994	109458874	XM_218747.4	Tjp1_predicted	XP_218747.3	ILMN_1365283	0001570403	S	7102	CCTGTACCTCTTGAGCCTTGAACTTTGACCTCTGCAGCAATAAAGCAGCA	1	-	119685097-119685146	1q22	PREDICTED: Rattus norvegicus tight junction protein 1 (predicted) (Tjp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19745169-S	ILMN_275862	CX3CL1	NM_134455.1	NM_134455.1		89808	19745169	NM_134455.1	Cx3cl1	NP_604450.1	ILMN_1371113	0006590082	S	2922	TGGTTCCCGCGCCTCGTGGGCCAAAACAATCTGAGGAGGACTTTGGAAGG	19	-	10667025-10667074	19p12	Rattus norvegicus chemokine (C-X3-C motif) ligand 1 (Cx3cl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-independent cell-cell adhesion [goid 51041] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of calcium-independent cell-cell adhesion [goid 51041] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IDA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Cx3c; Scyd1	Cx3c; Scyd1
Rattus norvegicus	RefSeq	GI_61556819-S	ILMN_270330	AKR1C21	NM_001013057.1	NM_001013057.1		291283	61556819	NM_001013057.1	Akr1c21	NP_001013075.1	ILMN_1349692	0000610372	S	1163	CAGGGAAGATGTCTCCCGAAAGACCTATGGTTGGAACACTGCTCAGCTGC	17	-	77034823-77034872	17q12.3	Rattus norvegicus aldo-keto reductase family 1, member C21 (Akr1c21), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653615-S	ILMN_271684	BUD13	NM_001025277.1	NM_001025277.1		300687	70608164	NM_001025277.1	Bud13	NP_001020448.1	ILMN_1374439	0002970711	S	1861	TGCCAGCAAGAAAGCTGTGGAGGAGCTTGCCTACAAGTGGAGTGTTGAGG	8	+	49282617-49282666	8q23	Rattus norvegicus BUD13 homolog (S. cerevisiae) (Bud13), mRNA.				MGC116139	MGC116139
Rattus norvegicus	RefSeq	GI_8393958-S	ILMN_285933	PIM1	NM_017034.1	NM_017034.1		24649	8393958	NM_017034.1	Pim1	NP_058730.1	ILMN_1355211	0006590451	S	1231	GACTGTGGGTCACCAAGATGGGCCAGGGTAGGGGAAAAACATTTGGGGGG	20	+	7821729-7821778	20p12	Rattus norvegicus pim-1 oncogene (Pim1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645467-S	ILMN_266284	EHF_PREDICTED	XM_001072326.1	XM_001072326.1		295965	109470292	XM_001072326.1	Ehf_predicted	XP_001072326.1	ILMN_1353429	0007040528	S	1905	GTTGACATTTGGGGCTGGGTCATTCTTTGTGCTGAGGGTTGTAGGGGGGC				3q32	PREDICTED: Rattus norvegicus ets homologous factor (predicted) (Ehf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657717-S	ILMN_64293	LOC501764	XM_577164.1	XM_577164.1		501764	62657717	XM_577164.1	LOC501764	XP_577164.1	ILMN_1364672	0002810717	S	24	GAGCATTCCACTGGCTATAAGCTGATGGGTGAAGGCCTACAGAAAATTTC					PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase 4a1 (LOC501764), mRNA.					
Rattus norvegicus	RefSeq	GI_18158452-S	ILMN_289734	GALE	NM_080783.1	NM_080783.1		114860	18158452	NM_080783.1	Gale	NP_542961.1	ILMN_1356000	0002760253	S	1046	GCGCATGGCTGAGGCTCTCCTTACCACGGACCAGAAAAGAGCAGCTACCT	5	+	154750022-154750036:154750037-154750071	5q36	Rattus norvegicus galactose-4-epimerase, UDP (Gale), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence ISS]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IEA]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]	Catalysis of the reaction: UDP-glucose = UDP-galactose [goid 3978] [evidence ISS]; Catalysis of the reaction: UDP-glucose = UDP-galactose [goid 3978] [evidence IEA]; Catalysis of the reaction: UDP-glucose = UDP-galactose [goid 3978] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]; Catalysis of the reaction: UDP-glucose = UDP-galactose [goid 3978] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090396-S	ILMN_289938	CYB5D2	NM_001007671.1	NM_001007671.1		303293	56090396	NM_001007671.1	Cyb5d2	NP_001007672.1	ILMN_1371920	0000670048	S	1344	GCCCTGCTGGCACTTGGAGCAGTAGCAAAACAGGACTGTGGCTCTCAGTG	10	-	59667074-59667123	10q24	Rattus norvegicus cytochrome b5 domain containing 2 (Cyb5d2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	MGC94212	MGC94212
Rattus norvegicus	RefSeq	GI_62641863-S	ILMN_62303	AHNAK	XM_574618.1	XM_574618.1		191572	62641863	XM_574618.1	Ahnak	XP_574618.1	ILMN_1373639	0007100332	S	8514	TGGTCAGCGGTGGTCAGTCATGTTGGTGAAAGAGCAGCAAGTCAGTCCCG				1q43	PREDICTED: Rattus norvegicus AHNAK nucleoprotein (desmoyokin) (Ahnak), mRNA.					
Rattus norvegicus	RefSeq	GI_47577902-S	ILMN_273789	OLR1155	NM_001000433.1	NM_001000433.1		300414	47577902	NM_001000433.1	Olr1155	NP_001000433.1	ILMN_1370041	0001850025	S	384	CCCTCTGAGGTACTTGGTCATCATGGAACCTTGTTTTTGTGTCCTGCTGG	8	-	17948522-17948571	8q13	Rattus norvegicus olfactory receptor 1155 (Olr1155), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-17948955-17948017_ORF; Olr1155	ratchr8-17948955-17948017_ORF; Olr1155
Rattus norvegicus	RefSeq	GI_62646846-S	ILMN_61334	RGD1561539_PREDICTED	XM_575377.2	XM_575377.2		500023	109471733	XM_575377.2	RGD1561539_predicted	XP_575377.2	ILMN_1354297	0004730097	S	634	GCCTCTGCCAAGGGCGTCAGTATGCCTCCCAACAGCTATATGCCTGGGTA	4	+	31767904-31767953	4q13	PREDICTED: Rattus norvegicus similar to Homeobox protein DLX-6 (predicted) (RGD1561539_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654709-S	ILMN_296639	NOD3L	NM_001024360.1	NM_001024360.1		501101	66730524	NM_001024360.1	nod3l	NP_001019531.1	ILMN_1360185	0007000059	S	686	CAACAGCCTTGCGGAGCCTCGTGTTGGCTGAGAACAGCATTAGCCCAGAG	9	-	10289311-10289360	9q12	Rattus norvegicus NOD3-like protein (nod3l), mRNA.					
Rattus norvegicus	RefSeq	GI_47577176-S	ILMN_267847	OLR347	NM_001000758.1	NM_001000758.1		405031	47577176	NM_001000758.1	Olr347	NP_001000758.1	ILMN_1351038	0006940044	S	677	TGCGTTCAGCTGCAGGACATCAGAAGGCCATGTCCACCTGTATATCTCAT	1	+	216127047-216127096	1q43	Rattus norvegicus olfactory receptor 347 (Olr347), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr347	Olr347
Rattus norvegicus	RefSeq	GI_62654362-S	ILMN_53312	KIF9_PREDICTED	XM_236648.4	XM_236648.4		316013	109483985	XM_236648.4	Kif9_predicted	XP_236648.4	ILMN_1370962	0006520497	S	7490	CTGCAGAGTGAGCTCTAGCTACAAACGCCCCTAGTTGTGAGCTGCTGGTG	8	+	114999438-114999487	8q32	PREDICTED: Rattus norvegicus kinesin family member 9 (predicted) (Kif9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012405-S	ILMN_55038	RT1-149	XM_579222.1	XM_579222.1		414784	62665557	XM_579222.1	RT1-149	XP_579222.1	ILMN_1352269	0000060184	S	1041	GGGAAAGGAGTCTACGCCCCTGCTCCAGCATGAAGACAGCTGCCTGGAGT				20p12	PREDICTED: Rattus norvegicus RT1 class I, T24, gene 4 (RT1-149), mRNA.					
Rattus norvegicus	RefSeq	GI_13027433	ILMN_52317	GOLPH3	NM_023977.2	NM_023977.2		78961	62461579	NM_023977.2	Golph3	NP_076467.2	ILMN_1650851	0003850053	S	811	GCGCTTGCTGGCCCTCATTTACCTAGCCCATGCCTCAGATGTTTTGGAAA	2	+	61815484-61815533	2q16	Rattus norvegicus golgi phosphoprotein 3 (coat-protein) (Golph3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			Gmx33	Gmx33
Rattus norvegicus	RefSeq	GI_62662489-S	ILMN_54388	RGD1304711_PREDICTED	XM_214334.4	XM_214334.4		290679	109503215	XM_214334.4	RGD1304711_predicted	XP_214334.4	ILMN_1349259	0001660603	S	2717	CTCTGAAAAGCCAGGAGAGAAAGAGCGGAGACAGCAAAGGGCAGGGGACC	16	-	21906891-21906940	16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921521J11 (predicted) (RGD1304711_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644811-S	ILMN_50004	BRD3_PREDICTED	XM_342396.2	XM_342396.2		362092	62644811	XM_342396.2	Brd3_predicted	XP_342397.2	ILMN_1375184	0007000301	S	1945	TCGCTCCGCAAGAAAGACCTCCAGCCTCCACGTGCACCTAAGGGAAAGTC				3p12	PREDICTED: Rattus norvegicus bromodomain containing 3 (predicted) (Brd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560031-S	ILMN_300275	ACCN4	NM_022234.1	NM_022234.1		63882	11560031	NM_022234.1	Accn4	NP_071570.1	ILMN_1349908	0006110397	S	2322	CCTTGGGACCTAGGCATGTTGGGCTGGTTCTACTTCCCTCTTTCCAGGCC	9	+	74749376-74749425	9q33	Rattus norvegicus amiloride-sensitive cation channel 4, pituitary (Accn4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Asic4; Spasic	Asic4; Spasic
Rattus norvegicus	RefSeq	GI_16758033-S	ILMN_62027	IGFALS	NM_053329.2	NM_053329.2		79438	71896591	NM_053329.2	Igfals	NP_445781.2	ILMN_1364924	0000540253	S	1553	TTCTGGTTGGATATCTCACACAACCACCTGGAGACGCTGGCCGAAGGCCT	10	+	14130084-14130133	10q12	Rattus norvegicus insulin-like growth factor binding protein, acid labile subunit (Igfals), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A complex of three proteins, which in animals is approximately 150kDa and consists of the insulin-like growth factor (IGF), the insulin-like growth factor binding protein-3 (IGFBP-3), or -5 (IGFBP-5) and an acid-labile subunit (ALS). The complex plays a role in growth and development [goid 42567] [evidence IMP]; A complex of three proteins, which in animals is approximately 150kDa and consists of the insulin-like growth factor (IGF), the insulin-like growth factor binding protein-3 (IGFBP-3), or -5 (IGFBP-5) and an acid-labile subunit (ALS). The complex plays a role in growth and development [goid 42567] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]	Als	Als
Rattus norvegicus	RefSeq	GI_58743354-A	ILMN_273673	CRISP2_PREDICTED	NM_001011710.1	NM_001011710.1		360445	58743354	NM_001011710.1	Crisp2_predicted	NP_001011710.1	ILMN_1376664	0004540471	S	127	GGCAGATATTTCAACTGTCAAATCAACACTTCCAGCCATGGCTTGGTTCC	9	+	16249686-16249713:16251126-16251134:16251135-16251147	9q12	Rattus norvegicus cysteine-rich secretory protein 2 (predicted) (Crisp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654594	ILMN_273673	CRISP2_PREDICTED	NM_001011710.1	NM_001011710.1		360445	58743354	NM_001011710.1	Crisp2_predicted	NP_001011710.1	ILMN_1650877	0006350068	S	900	CCCAGCGTGCAGCATGACAGACTACATGAGAAGGGGTACAGACTTAGTTG	9	+	16271484-16271533	9q12	Rattus norvegicus cysteine-rich secretory protein 2 (predicted) (Crisp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661810-S	ILMN_62349	LOC498559	XM_573834.1	XM_573834.1		498559	62661810	XM_573834.1	LOC498559	XP_573834.1	ILMN_1361470	0005700368	S	871	GCTGACCAATATTTAGCCTGGTCAGTGAGCTAAAAGTGAGTGCGTTGACC				15q21	PREDICTED: Rattus norvegicus similar to OTTHUMP00000018508 (LOC498559), mRNA.					
Rattus norvegicus	RefSeq	GI_9506444-S	ILMN_291681	CAR2	NM_019291.1	NM_019291.1		54231	9506444	NM_019291.1	Car2	NP_062164.1	ILMN_1364348	0004050332	S	961	TCTCATGTGGTGGTAGCATGGTGGCAGGCTGGTGGTTGACTTAGGGCATC	2	-	88077543-88077592	2q23	Rattus norvegicus carbonic anhydrase II (Car2), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence ISS]; The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence IEA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; The directed movement of carbon dioxide (CO2) into, out of, within or between cells [goid 15670] [evidence ISS]; The directed movement of carbon dioxide (CO2) into, out of, within or between cells [goid 15670] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence TAS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence TAS]; Any process that activates or increases the frequency, rate, or extent of a process that reduces the internal pH of a cell [goid 32849] [evidence IMP]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that modulates the frequency, rate or extent of bone tissue loss (resorption) [goid 45124] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence IMP]; The regulated release of a substance by a cell, a group of cells, or a tissue [goid 46903] [evidence ISS]; The regulated release of a substance by a cell, a group of cells, or a tissue [goid 46903] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Car2	Car2
Rattus norvegicus	RefSeq	GI_62662802-S	ILMN_281590	RGD1562638_PREDICTED	XM_001070118.1	XM_001070118.1		290818	109504352	XM_001070118.1	RGD1562638_predicted	XP_001070118.1	ILMN_1366350	0002900458	S	2081	CATCAGCTGCCGGTCTCCAGATGGACCTCTACCAAAGGACTCTTGATCTC				16q12.3	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 3 (predicted) (RGD1562638_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078912-S	ILMN_300156	OAF	NM_001014090.1	NM_001014090.1		315594	62078912	NM_001014090.1	Oaf	NP_001014112.1	ILMN_1350828	0001990441	S	1422	GCTCTTGTGTCCAGTTACAGTGCCTTCTTTCTACCCTGGGGGCAACGGGG	8	-	46225083-46225132	8q22	Rattus norvegicus OAF homolog (Drosophila) (Oaf), mRNA.					
Rattus norvegicus	RefSeq	GI_62660737-S	ILMN_52648	RGD1561422_PREDICTED	XM_573644.2	XM_573644.2		498402	109499951	XM_573644.2	RGD1561422_predicted	XP_573644.1	ILMN_1367159	0003850239	S	2535	CCAAAGTGTCTCTCATCTCGGGCAGCAAGGCACCACCTCCAGAAGTCCTG	14	+	85319902-85319951	14q21	PREDICTED: Rattus norvegicus similar to ASC-1 complex subunit P100 (predicted) (RGD1561422_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648791	ILMN_64006	LOC500436	XM_575798.1	XM_575798.1		500436	62648791	XM_575798.1	LOC500436	XP_575798.1	ILMN_1651079	0002030619	S	1470	GGGCTGCTTGAGTAAGGAGGATATTGAGCGCATGGTCCAGGAAGCTGAGA					PREDICTED: Rattus norvegicus similar to heat shock protein 8 (LOC500436), mRNA.					
Rattus norvegicus	RefSeq	GI_6978560-S	ILMN_265069	ATP7B	NM_012511.1	NM_012511.1		24218	6978560	NM_012511.1	Atp7b	NP_036643.1	ILMN_1357509	0003290113	S	4633	CACCCTGCTTGGATTTTAGTGCAGGAGAGGAAGCCAGCACTCCTCAGGCC	16	+	74679194-74679243	16q12.5	Rattus norvegicus ATPase, Cu++ transporting, beta polypeptide (Atp7b), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence IEA]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence ISS]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; The directed movement of copper ions into a cell or organelle [goid 15677] [evidence IEA]; The directed movement of copper ions into a cell or organelle [goid 15677] [evidence ISS]; The directed movement of copper (Cu) ions within a cell [goid 15680] [evidence ISS]; The directed movement of copper (Cu) ions within a cell [goid 15680] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence ISS]; The process of binding or confining calcium ions such that they are separated from other components of a biological system [goid 51208] [evidence IEA]; The process of binding or confining calcium ions such that they are separated from other components of a biological system [goid 51208] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence IEA]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The directed movement of copper ions into a cell or organelle [goid 15677] [evidence IEA]; The directed movement of copper (Cu) ions within a cell [goid 15680] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEA]; The process of binding or confining calcium ions such that they are separated from other components of a biological system [goid 51208] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence IEA]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of copper ions into a cell or organelle [goid 15677] [evidence IEA]; The directed movement of copper (Cu) ions within a cell [goid 15680] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]; The process of binding or confining calcium ions such that they are separated from other components of a biological system [goid 51208] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence IEA]; Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IDA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IDA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+ = ADP + phosphate + Cu2+, directly driving the transport of the copper ions across a membrane [goid 43682] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence IEA]; Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]	Hts; PINA; Wd	Hts; PINA; Wd
Rattus norvegicus	RefSeq	GI_47577298-S	ILMN_285712	OLR407	NM_001000828.1	NM_001000828.1		405117	47577298	NM_001000828.1	Olr407	NP_001000828.1	ILMN_1370065	0003130390	S	254	TGCTGACGCACAGTCAGTCCATCTCATATGCTGGATGCATTACCCAGGTA	3	+	16234029-16234078	3p11	Rattus norvegicus olfactory receptor 407 (Olr407), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr407	Olr407
Rattus norvegicus	RefSeq	GI_62642923-S	ILMN_68107	LOC365668	XM_345153.2	XM_345153.2		365668	62642923	XM_345153.2	LOC365668	XP_345154.2	ILMN_2039000	0005360100	S	581	CAGAGCGAGAGCTCTTCCCGTTCAGTGACTGACCGTTGGCGAGCAGTGCT				2q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610528A15 (predicted) (LOC365668), mRNA.					
Rattus norvegicus	RefSeq	GI_62651553-S	ILMN_69597	LOC366768	XM_345755.2	XM_345755.2		366768	62651553	XM_345755.2	LOC366768	XP_345756.2	ILMN_1363690	0006290079	S	704	CCAAACCCAGAACATTCAAGAAGGGGTTAATGGTGTCTTCTCCCAGGTCC				6q33	PREDICTED: Rattus norvegicus similar to Ig H-chain V-region VH105 (LOC366768), mRNA.					
Rattus norvegicus	RefSeq	GI_47576932-S	ILMN_281057	OLR245	NM_001000215.1	NM_001000215.1		293390	47576932	NM_001000215.1	Olr245	NP_001000215.1	ILMN_1352136	0001090368	S	437	CCTGTGTCATTGGGTTCCTTTGTTCTCTCAGCATCACCTTCACCATATTC	1	+	165435840-165435889	1q33	Rattus norvegicus olfactory receptor 245 (Olr245), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr245; ratchr1-165546067-165547050_ORF	Olr245; ratchr1-165546067-165547050_ORF
Rattus norvegicus	RefSeq	GI_62657059-S	ILMN_284791	RGD1564228_PREDICTED	XM_001081442.1	XM_001081442.1		360630	109491870	XM_001081442.1	RGD1564228_predicted	XP_001081442.1	ILMN_1369703	0001090524	S	2309	ACATGCACAGGATGCTTCCCACGATTTGGAGGAGACAGGGTCTGACAGTG					PREDICTED: Rattus norvegicus similar to Naglu (predicted) (RGD1564228_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577468-S	ILMN_288916	OLR475	NM_001000686.1	NM_001000686.1		404891	47577468	NM_001000686.1	Olr475	NP_001000686.1	ILMN_1372325	0004050161	S	650	TGCTCATTGTAGTAGCAGTGTTACGCATGCACTCGGCTGATGGCAGGAGA	3	+	69243392-69243441	3q24	Rattus norvegicus olfactory receptor 475 (Olr475), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr475	Olr475
Rattus norvegicus	RefSeq	GI_62660699-S	ILMN_50385	LOC305466	XM_223586.3	XM_223586.3		305466	62660699	XM_223586.3	LOC305466	XP_223586.3	ILMN_1367448	0002650139	S	5433	CCCAAGCTTGCTAGTCACTGGGAGGTGTCCCTGTATAAGTCTGTGCCAAC				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9030221M09 gene (predicted) (LOC305466), mRNA.					
Rattus norvegicus	RefSeq	GI_62655059-S	ILMN_53663	SF3B1	XM_343570.2	XM_343570.2		84486	62655059	XM_343570.2	Sf3b1	XP_343571.2	ILMN_1358274	0000780035	S	5704	GCAGCTCAAAGGAGACTTCTGCCCCTTAAGTGACATTTTCCTGGTGGAGG				9q31	PREDICTED: Rattus norvegicus splicing factor 3b, subunit 1 (Sf3b1), mRNA.		The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948505-S	ILMN_262953	RGD1303144	NM_001004266.1	NM_001004266.1		311833	51948505	NM_001004266.1	RGD1303144	NP_001004266.1	ILMN_1360237	0006660619	S	1458	ATGTGGGGAGCCAGGAACAAGCCCCAAAGACACTCAAATCCCCTGCCCTC	3	+	7821101-7821150	3p12	Rattus norvegicus HypB, AroK, ADK and rho factor domain containing protein RGD1303144 (RGD1303144), mRNA.		The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate [goid 19205] [evidence IEA]	MGC94995	MGC94995
Rattus norvegicus	RefSeq	GI_34863075-S	ILMN_278970	RGD1561792_PREDICTED	XM_001070434.1	XM_001070434.1		298861	109479101	XM_001070434.1	RGD1561792_predicted	XP_001070434.1	ILMN_1361799	0002760278	S	160	GCCTTGCACCTTCATCGAGACCATCCGCACACAGCAGCTTATCTCCGGGA				6q14	PREDICTED: Rattus norvegicus similar to CG14903-PA (predicted) (RGD1561792_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656714-S	ILMN_64736	LOC363662	XM_343952.2	XM_343952.2		363662	62656714	XM_343952.2	LOC363662	XP_343953.2	ILMN_1359995	0004920242	S	5523	ATGCCAACAGCCCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTGCG				10q26	PREDICTED: Rattus norvegicus similar to Breast carcinoma amplified sequence 3 homolog (K20D4) (LOC363662), mRNA.					
Rattus norvegicus	RefSeq	GI_9507148-S	ILMN_275342	STCH	NM_019271.1	NM_019271.1		29734	9507148	NM_019271.1	Stch	NP_062144.1	ILMN_1374798	0003290008	S	1329	CCAAGCTGGGATTGATGGAGGGTGCTGGCCTCTCCAAGTTAGTGCTTTAG	11	-	14521965-14522014	11p11	Rattus norvegicus stress 70 protein chaperone, microsome-associated, 60kD human homolog (Stch), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663873-S	ILMN_51575	LOC502145	XM_577598.1	XM_577598.1		502145	62663873	XM_577598.1	LOC502145	XP_577598.1	ILMN_1354557	0005900435	S	571	CTCTAGCACAGTCGCCAGCAGTATGCCCTTTGCCTCGCCGAAATGTCTCC					PREDICTED: Rattus norvegicus similar to interleukin 15 receptor precursor (LOC502145), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717752-S	ILMN_298365	LOC685745	XR_006283.1	XR_006283.1		685745	109512811	XR_006283.1	LOC685745		ILMN_1366542	0004230600	S	1548	GGACACGTTCCTGAGACGCTGGATGTGAAATGCCGCACACAACATTCGGG	Un|NW_047830.1	-	94458-94507		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC685745), mRNA.					
Rattus norvegicus	RefSeq	GI_62079020-S	ILMN_277958	RGD1310571	NM_001014147.1	NM_001014147.1		361301	62079020	NM_001014147.1	RGD1310571	NP_001014169.1	ILMN_1349756	0002360070	S	2240	GGGGACTGGAAGGATGGCTCAGCAGTTAGGAGCGTGGACTACTCATGCAG				18p12	Rattus norvegicus similar to hypothetical protein (RGD1310571), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62659398-S	ILMN_279171	RGD1562613_PREDICTED	XR_008169.1	XR_008169.1		363994	109498707	XR_008169.1	RGD1562613_predicted		ILMN_1367940	0000050181	S	382	ACCCAAGGAGACGCAGCACCAAATCCCCAGGTCCCTGATTAGCCTGCAGA				13q13	PREDICTED: Rattus norvegicus similar to U2 small nuclear ribonucleoprotein B (predicted) (RGD1562613_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650296-S	ILMN_52628	RGD1562146_PREDICTED	XM_580093.2	XM_580093.2		500612	109477881	XM_580093.2	RGD1562146_predicted	XP_580093.2	ILMN_1370280	0005720619	S	380	GGTACAGCCAGGTCCATGAGCAACCTGCAAGTGCGAGGCCATCTTCAGAC	6	-	9878213-9878262	6q12	PREDICTED: Rattus norvegicus RGD1562146 (predicted) (RGD1562146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47058989-S	ILMN_285422	ABCB7	NM_212518.1	NM_212518.1		302395	47058989	NM_212518.1	Abcb7	NP_997683.1	ILMN_1361471	0003610128	S	2043	TGTCCTGAGCCAGGGAAAAGTAGCTGAACGTGGTACCCACTATGGTCTGC	X	-	92280333-92280382	Xq31	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 7 (Abcb7), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646534-S	ILMN_264569	RGD1564340_PREDICTED	XM_575302.1	XM_575302.1		499953	62646534	XM_575302.1	RGD1564340_predicted	XP_575302.1	ILMN_1374875	0007000750	S	1136	CGGTTCCTGGCTTCTTCAAGGGAACTCAGCCCCTCAGCCTCAGCACCTTA	3	+	170363267-170363316	3q43	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC5356 (predicted) (RGD1564340_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647889-S	ILMN_288408	LOC687292	XM_001077865.1	XM_001077865.1		687292	109474015	XM_001077865.1	LOC687292	XP_001077865.1	ILMN_1362004	0005700592	S	129	AAAGGCACATTTTCCAATGACGGCTGCAAACCAACAGCTTCCCCGGGTGG					PREDICTED: Rattus norvegicus hypothetical protein LOC687292 (LOC687292), mRNA.					
Rattus norvegicus	RefSeq	GI_19923681-S	ILMN_264838	PTGS2	NM_017232.2	NM_017232.2		29527	19923681	NM_017232.2	Ptgs2	NP_058928.2	ILMN_1349422	0001580048	S	4208	TGAACCTGGGAATTCAGGTTAAGTATGTGACTGCTGCCGTGCCTCAGAGA	13	+	64435249-64435298	13q21	Rattus norvegicus prostaglandin-endoperoxide synthase 2 (Ptgs2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence TAS]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IMP]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IMP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus [goid 9750] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus [goid 10042] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The release of a mature ovum/oocyte from an ovary [goid 30728] [evidence IMP]; A process that increases synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 31915] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32227] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IMP]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51926] [evidence IMP]; Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51968] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence ISS]; Catalysis of the reaction: arachidonate + donor-H2 + 2 O2 = prostaglandin H2 + acceptor + H2O [goid 4666] [evidence TAS]; Catalysis of the reaction: arachidonate + donor-H2 + 2 O2 = prostaglandin H2 + acceptor + H2O [goid 4666] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a lipid [goid 8289] [evidence IMP]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	COX-2; Cox2	COX-2; Cox2
Rattus norvegicus	RefSeq	GI_27664905-S	ILMN_269411	LOC687799	XM_001080182.1	XM_001080182.1		687799	109479458	XM_001080182.1	LOC687799	XP_001080182.1	ILMN_1361008	0002480286	S	106	GGAAAAGACAACGGGAAGGCCAAGGCTAAGGCAGTGTCACGCTCACAGAG					PREDICTED: Rattus norvegicus similar to H2A histone family, member V isoform 1 (LOC687799), mRNA.					
Rattus norvegicus	RefSeq	GI_62667086-S	ILMN_275296	RGD1565579_PREDICTED	XM_001056445.1	XM_001056445.1		367860	109512139	XM_001056445.1	RGD1565579_predicted	XP_001056445.1	ILMN_1361204	0002900133	S	174	GGTTGGTGTGAATTCTGTTGAAGGAGGGAGCAAGGAAGAAGGAGAGGGCT				Xq31	PREDICTED: Rattus norvegicus similar to tubulin, alpha 1 (predicted) (RGD1565579_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657556-S	ILMN_55951	LOC498041	XM_573243.1	XM_573243.1		498041	62657556	XM_573243.1	LOC498041	XP_573243.1	ILMN_1364788	0004120286	S	632	GCTCAAAGGACCAATTTGTGGCTTAAAGTGGGACCCAGCAGAACCAAGAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498041), mRNA.					
Rattus norvegicus	RefSeq	GI_11875204-S	ILMN_295922	GATA6	NM_019185.1	NM_019185.1		29300	11875204	NM_019185.1	Gata6	NP_062058.1	ILMN_1363338	0000770520	S	1607	AAGAAGAGATGGGTCTTTGTAGGAAGGGGCAGCACAGTGGGCGTGTGGCC	18	+	2534536-2534585	18p13	Rattus norvegicus GATA binding protein 6 (Gata6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19033371-S	ILMN_292206	MAK10	NM_133324.1	NM_133324.1		64472	19033371	NM_133324.1	Mak10	NP_579858.1	ILMN_1370276	0006510452	S	2084	CCAATGCAGACCGGGAGGTCAGCAGGATCCTAAAGGTTGCCAAGCCTAAC	17	-	10942027-10942060:10944421-10944436	17p14	Rattus norvegicus MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) (Mak10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population [goid 48659] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	T4a	T4a
Rattus norvegicus	RefSeq	GI_62660065-S	ILMN_67697	LOC498322	XM_579816.1	XM_579816.1		498322	62660065	XM_579816.1	LOC498322	XP_579816.1	ILMN_1353966	0000780113	S	124	GTCGACCACAGGGGAGTTGAAGACGGAATGGTAGCAACGCCAGCAGCGGC					PREDICTED: Rattus norvegicus LOC498322 (LOC498322), mRNA.					
Rattus norvegicus	RefSeq	GI_62655313-S	ILMN_56587	WNT6_PREDICTED	XM_237295.4	XM_237295.4		316526	109486258	XM_237295.4	Wnt6_predicted	XP_237295.4	ILMN_1358623	0000160601	S	1376	TCGAGGAGAACTGCCTGTGCCGCTTCCACTGGTGCTGCGTGGTGCAATGC	9	+	74117178-74117227	9q33	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 6 (predicted) (Wnt6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641281-S	ILMN_276299	LOC687721	XM_001079922.1	XM_001079922.1		687721	109462867	XM_001079922.1	LOC687721	XP_001079922.1	ILMN_1375153	0000510368	S	610	CTCCTACATTCCCTGGAGCTTGTCCTATCTCGGGCTGTTCGGGACCTGCT					PREDICTED: Rattus norvegicus similar to interleukin 27 (LOC687721), mRNA.					
Rattus norvegicus	RefSeq	GI_6978740-S	ILMN_283445	CYP2A2	NM_012693.1	NM_012693.1		24895	6978740	NM_012693.1	Cyp2a2	NP_036825.1	ILMN_1356756	0004050739	S	1750	CACTCAGTCCTCTACACAAGAGCAGCATGTCCCCAAGCCCAACGTACAGG	1	+	82063784-82063833	1q21	Rattus norvegicus cytochrome P450, subfamily 2A, polypeptide 1 (Cyp2a2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence IDA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence TAS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	CYP2A21; RATCYP2A21	CYP2A21; RATCYP2A21
Rattus norvegicus	RefSeq	GI_62657715-S	ILMN_64203	LOC501763	XM_577163.1	XM_577163.1		501763	62657715	XM_577163.1	LOC501763	XP_577163.1	ILMN_1361116	0001170717	S	1810	CTGGCTGCACCGAAGAGGCGAAGACATTTTCATCTTGTGTAAAGCGGAGG					PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (LOC501763), mRNA.					
Rattus norvegicus	RefSeq	GI_6978432-S	ILMN_266002	ACADSB	NM_013084.1	NM_013084.1		25618	6978432	NM_013084.1	Acadsb	NP_037216.1	ILMN_1375035	0006420369	S	1174	ATCGAGTGGATGGGAGGGGTCGGCTACACCAAAGATTACCCTGTGGAGAA	1	+	191025467-191025516	1q41	Rattus norvegicus acyl-Coenzyme A dehydrogenase, short/branched chain (Acadsb), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA];  [goid 16937] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642006-S	ILMN_65042	RGD1311340_PREDICTED	XM_219672.4	XM_219672.4		309243	109459942	XM_219672.4	RGD1311340_predicted	XP_219672.4	ILMN_1367209	0006840411	S	239	TTTTCTTTCGGAAGGGGCGTTCCTGTCGGTTAGCACCACGCCCTGACACC	1	-	220221764-220221813	1q43	PREDICTED: Rattus norvegicus similar to chorein isoform B; chorein (predicted) (RGD1311340_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641917-S	ILMN_65042	RGD1311340_PREDICTED	XM_219672.4	XM_219672.4		309243	109459942	XM_219672.4	RGD1311340_predicted	XP_219672.4	ILMN_1372429	0002260132	S	9646	GTTGGAGCAGTGGCAAGGCCAACGGGTGGCATCATAGATATGGCCAGCAG	1	-	220017511-220017560	1q43	PREDICTED: Rattus norvegicus similar to chorein isoform B; chorein (predicted) (RGD1311340_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662971-S	ILMN_60278	PROZ_PREDICTED	XM_225018.4	XM_225018.4		306608	109503578	XM_225018.4	Proz_predicted	XP_225018.4	ILMN_1360563	0004050139	S	871	AGGGACTTTGCAGAGCATGTCCTTATCCCTGGAACGAAGGGTGTCCTCAG	16	-	81311043-81311092	16q12.5	PREDICTED: Rattus norvegicus protein Z, vitamin K-dependent plasma glycoprotein (predicted) (Proz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653995-S	ILMN_276209	RGD1561222_PREDICTED	XM_001076681.1	XM_001076681.1		503214	109484898	XM_001076681.1	RGD1561222_predicted	XP_001076681.1	ILMN_1373996	0001170577	S	695	CACACTTGATCGCTCGGGACCCTTATGACCTGATGGGGGCCGCTCTGATT				8q24	PREDICTED: Rattus norvegicus similar to RNA binding protein with multiple splicing 2 (predicted) (RGD1561222_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393392-S	ILMN_282486	GABRD	NM_017289.1	NM_017289.1		29689	8393392	NM_017289.1	Gabrd	NP_058985.1	ILMN_1356228	0006620435	S	1637	GCCCTTGGGAGCTGTGAAGTTTTAGACTCAGGATGGGCCTGATTTCTGGG	5	-	172203167-172203216	5q36	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit delta (Gabrd), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	MGC105467; GABAA-RD	MGC105467; GABAA-RD
Rattus norvegicus	RefSeq	GI_62638533-S	ILMN_54335	RGD1563824_PREDICTED	XM_574313.2	XM_574313.2		499020	109457743	XM_574313.2	RGD1563824_predicted	XP_574313.2	ILMN_1360241	0002230064	S	2004	GAACCTGTGCTGTCAGGGCACTCTTCCTCACGCTGTTGTTACTCATGCAC	1	+	41916917-41916966	1q11	PREDICTED: Rattus norvegicus similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted) (RGD1563824_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222303-S	ILMN_279046	LY49S6	NM_001009488.1	NM_001009488.1		494196	57222303	NM_001009488.1	Ly49s6	NP_001009488.1	ILMN_1361534	0006100048	S	1082	AAAACGAGGAACTGTGGATGGGAGGACTGGTTGGGGTAGTGTCTTGACTG	4	-	167934457-167934506	4q42	Rattus norvegicus Ly49 stimulatory receptor 6 (Ly49s6), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656293-S	ILMN_58598	CNTROB_PREDICTED	XM_220600.4	XM_220600.4		303240	109488276	XM_220600.4	Cntrob_predicted	XP_220600.3	ILMN_1369760	0000360750	S	2629	GCCCCTAAGACTGAAAAGCCTGCTCGGAAGAAAAGTGGGCATCCTGGCCC	10	-	56094558-56094607	10q24	PREDICTED: Rattus norvegicus centrobin, centrosomal BRCA2 interacting protein (predicted) (Cntrob_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653852-S	ILMN_50716	LOC501014	XM_580150.1	XM_580150.1		501014	62653852	XM_580150.1	LOC501014	XP_580150.1	ILMN_1370838	0003450242	S	613	GCCTGGAGGCCATTACATCAAGTGCAAGAGGAGGCTTCACGAAGGACTCG					PREDICTED: Rattus norvegicus LOC501014 (LOC501014), mRNA.					
Rattus norvegicus	RefSeq	GI_6981521-S	ILMN_284660	SDC4	NM_012649.1	NM_012649.1		24771	6981521	NM_012649.1	Sdc4	NP_036781.1	ILMN_1352387	0003520672	S	2236	CTAGTAGCTTAAAAGGTCTGGGCTGTGTGGGGGTGGGGCGGTCATACCAC	3	-	155446310-155446359	3q42	Rattus norvegicus syndecan 4 (Sdc4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix [goid 43034] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IMP]	Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IPI]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence NAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IMP]	Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence IDA]; Interacting selectively with alpha-actinin, one of a family of proteins that cross-link F-actin as antiparallel homodimers. Alpha-actinin has a molecular mass of 93-103 KDa; at the N-terminus there are two calponin homology domains, at the C-terminus there are two EF-hands. These two domains are connected by the rod domain. This domain is formed by triple-helical spectrin repeats [goid 51393] [evidence IPI]	RYUDOCA; RATRYUDOCA	RYUDOCA; RATRYUDOCA
Rattus norvegicus	RefSeq	GI_47577558-S	ILMN_272497	OLR514	NM_001000314.1	NM_001000314.1		295767	47577558	NM_001000314.1	Olr514	NP_001000314.1	ILMN_1352644	0003360097	S	388	CTGCTCTACACTGTCCTCATGTCACCGAAAGTTTGTTGGGTTCTTATGGC	3	-	69820545-69820594	3q24	Rattus norvegicus olfactory receptor 514 (Olr514), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr514	Olr514
Rattus norvegicus	RefSeq	GI_62642449-A	ILMN_298748	OBFC1	NM_001011943.1	NM_001011943.1		294025	58865455	NM_001011943.1	Obfc1	NP_001011943.1	ILMN_1376839	0003780619	S	1287	TTGATGCACGTCCTGAACTGCGTGCTCCTCAACCTCCGCTGGGACCTGAA	1	-	252875678-252875727	1q54	Rattus norvegicus oligonucleotide/oligosaccharide-binding fold containing 1 (Obfc1), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13592064-S	ILMN_297264	RPS6KA1	NM_031107.1	NM_031107.1		81771	13592064	NM_031107.1	Rps6ka1	NP_112369.1	ILMN_2039107	0002600215	S	2764	CGACTGGCTCCTCAGCAGAACTTGGTGTCCCCAGCCATCTCTTTTTCCAT				5q36	Rattus norvegicus ribosomal protein S6 kinase polypeptide 1 (Rps6ka1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of ribosomal protein S6 [goid 4711] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13786147-S	ILMN_277868	TFAM	NM_031326.1	NM_031326.1		83474	13786147	NM_031326.1	Tfam	NP_112616.1	ILMN_1365074	0001090358	S	1227	CACAGCTGTGGCAGAGCCATTGCAGTTTCTAAGAACCTTCCGGGCTTTAC	20	+	18112454-18112503	20p11	Rattus norvegicus transcription factor A, mitochondrial (Tfam), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The process whereby new strands of DNA are synthesized in the mitochondrion [goid 6264] [evidence TAS]; The synthesis of RNA from a mitochondrial DNA template, usually by a specific mitochondrial RNA polymerase [goid 6390] [evidence TAS]; The synthesis of RNA from a mitochondrial DNA template, usually by a specific mitochondrial RNA polymerase [goid 6390] [evidence IMP]; The aggregation, arrangement and bonding together of a set of components to form a mitochondrial respiratory chain complex [goid 33108] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]	Mttfa	Mttfa
Rattus norvegicus	RefSeq	GI_56799402-S	ILMN_277016	FNTB	NM_172034.2	NM_172034.2		64511	56799402	NM_172034.2	Fntb	NP_742031.1	ILMN_1352070	0004120041	S	2315	GGGACAGTGACCAGCAGGAAGGCAAGTGCTGTCCGTGTGCTGAATTCTGG	6	+	99511102-99511151	6q24	Rattus norvegicus farnesyltransferase, CAAX box, beta (Fntb), mRNA.		Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IEA]	Catalysis of the reaction: trans,trans-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate [goid 4311] [evidence ISS]; Catalysis of the reaction: trans,trans-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate [goid 4311] [evidence IEA]; Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate [goid 4660] [evidence IDA]; Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate [goid 4660] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105303	MGC105303
Rattus norvegicus	RefSeq	GI_47576850-S	ILMN_265851	OLR20	NM_001000118.1	NM_001000118.1		293083	47576850	NM_001000118.1	Olr20	NP_001000118.1	ILMN_1365582	0003610132	S	591	ACTTCTGACTGACATTGGACTCAGTGGTAGCTGCTTTGTGTTTATTGCCA	1	+	142539857-142539906	1q32	Rattus norvegicus olfactory receptor 20 (Olr20), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr20	Olr20
Rattus norvegicus	RefSeq	GI_6981271-S	ILMN_272070	NGFR	XM_001081319.1	XM_001081319.1		24596	109491708	XM_001081319.1	Ngfr	XP_001081319.1	ILMN_1365512	0000770465	S	3028	TGCAGGTACGGTTTAGCATGTGTTTGGTTCTGGGGGTCTCTCCAGCCTTG				10q31	PREDICTED: Rattus norvegicus nerve growth factor receptor (TNFR superfamily, member 16) (Ngfr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IMP]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal [goid 16048] [evidence IEA]; The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal [goid 16048] [evidence ISS]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence IEA]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 40037] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42488] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42488] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEA]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of muscle development [goid 48635] [evidence IPI]; Any process that stops, prevents or reduces the frequency, rate or extent of hair follicle development [goid 51799] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal [goid 16048] [evidence IEA]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42488] [evidence IEA]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with neurotrophin, any of a family of growth factors that block apoptosis in neurons and thus promote nerve growth, to initiate a change in cell activity [goid 5030] [evidence IPI];  [goid 5035] [evidence IEA];  [goid 5035] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with neurotrophin, any of a family of growth factors that block apoptosis in neurons and thus promote nerve growth [goid 43121] [evidence IPI]; Interacting selectively with nerve growth factor [goid 48406] [evidence IEA]; Interacting selectively with nerve growth factor [goid 48406] [evidence ISS];  [goid 5035] [evidence IEA]; Interacting selectively with nerve growth factor [goid 48406] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_52345432-S	ILMN_282334	CYP4A8	NM_031605.2	NM_031605.2		266674	52345432	NM_031605.2	Cyp4a8	NP_113793.2	ILMN_1369586	0002370463	S	2183	AGAGCCATTGTTCCAGCAACCTAACACAGTCCTTCTCTGACTGTCACCTC	5	-	135547102-135547151	5q36	Rattus norvegicus cytochrome P450, family 4, subfamily a, polypeptide 8 (Cyp4a8), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	MGC93354; Cyp4a12	MGC93354; Cyp4a12
Rattus norvegicus	RefSeq	GI_62821816-S	ILMN_63949	FCER1A	NM_012724.3	NM_012724.3		25047	62821816	NM_012724.3	Fcer1a	NP_036856.1	ILMN_1364767	0003850091	S	630	GGCGGTGATTCTGTTTGCTGTGGACACTGGGTTATGGTTCTCAACCCACA	13	-	89430357-89430406	13q24	Rattus norvegicus Fc receptor, IgE, high affinity I, alpha polypeptide (Fcer1a), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of type I hypersensitivity, a type of inflammatory response [goid 1812] [evidence ISS]; The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells [goid 1820] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence ISS]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mast cell degranulation [goid 43306] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-3 [goid 45401] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of granulocyte macrophage colony-stimulating factor [goid 45425] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]	Combining with an immunoglobulin of the IgE isotype via the Fc region to initiate a change in cell activity [goid 19767] [evidence ISS]; Combining with high affinity with an immunoglobulin of the IgE isotype via the Fc region to initiate a change in cell activity [goid 19768] [evidence TAS]; Interacting selectively with an immunoglobulin of the IgE isotype [goid 19863] [evidence TAS]; Interacting selectively with an immunoglobulin of the IgE isotype [goid 19863] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an immunoglobulin of the IgE isotype [goid 19863] [evidence IEA]	Iger01; RATIGER01	Iger01; RATIGER01
Rattus norvegicus	RefSeq	GI_62665209-S	ILMN_302152	LOC689421	XM_001071043.1	XM_001071043.1		689421	109508025	XM_001071043.1	LOC689421	XP_001071043.1	ILMN_1356503	0005390364	S	1560	AGGTCAGATCCAAGGGAAGGCGACCGACATCCAGAACCTGAATGAACCAA	19	+	36855972-36856021	19q12	PREDICTED: Rattus norvegicus similar to Beta-2-syntrophin (59 kDa dystrophin-associated protein A1, basic component 2) (Syntrophin 3) (SNT3) (Syntrophin-like) (SNTL), transcript variant 2 (LOC689421), mRNA.					
Rattus norvegicus	RefSeq	GI_62646198-S	ILMN_298745	RGD1564277_PREDICTED	XR_008131.1	XR_008131.1		502686	109471104	XR_008131.1	RGD1564277_predicted		ILMN_1352498	0005720154	S	235	AGGCAAAGAAGACCCCTGGAACGCCATCACTTGGAGCCATCCTGGCAGCA					PREDICTED: Rattus norvegicus similar to translocator of inner mitochondrial membrane 17a (predicted) (RGD1564277_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865721-A	ILMN_295283	PHYHIPL	NM_001012076.1	NM_001012076.1		309901	58865721	NM_001012076.1	Phyhipl	NP_001012076.1	ILMN_1376691	0001450471	S	1047	TGTGGCTCTTTCCCTGGGCACCGTGGCAGAAATCACTGGTCATCAGCTCA	20	+	18848907-18848956	20p11	Rattus norvegicus phytanoyl-CoA 2-hydroxylase interacting protein-like (Phyhipl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62640898-S	ILMN_59869	LOC499202	XM_574488.1	XM_574488.1		499202	62640898	XM_574488.1	LOC499202	XP_574488.1	ILMN_1369797	0005720170	S	941	GATTCTCGGGCGCTTGGTCTAACACTCATCTCCAGGATAGAGCAGTGCCG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499202), mRNA.					
Rattus norvegicus	RefSeq	GI_47576274-S	ILMN_295927	OLR1294	NM_001000597.1	NM_001000597.1		367064	47576274	NM_001000597.1	Olr1294	NP_001000597.1	ILMN_1357821	0004780286	S	113	TGGTAGCAGGGAACCTGGGGATGATTGCATTGATTTGGCTCAGTTCGCAC	8	-	41666638-41666687	8q22	Rattus norvegicus olfactory receptor 1294 (Olr1294), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1294	Olr1294
Rattus norvegicus	RefSeq	GI_62657798-S	ILMN_48885	NFKBIZ_PREDICTED	XM_221537.4	XM_221537.4		304005	109493074	XM_221537.4	Nfkbiz_predicted	XP_221537.4	ILMN_1362295	0003140097	S	1291	CGGCCCTGCATTTGGCAGCGGAGGAAGCAAATCTGGAACTCATTCGCCTC	11	+	45808122-45808171	11q12	PREDICTED: Rattus norvegicus nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta (predicted) (Nfkbiz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645838-S	ILMN_55179	ANAPC1_PREDICTED	XM_230589.4	XM_230589.4		311412	109468792	XM_230589.4	Anapc1_predicted	XP_230589.4	ILMN_1357954	0006660685	S	6046	CTTTGCTGAGACTGGCTCCTGTGCTGCTCGGGAATCCACAGCCGATGGTT	3	-	116214924-116214973	3q36	PREDICTED: Rattus norvegicus anaphase promoting complex subunit 1 (predicted) (Anapc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641139-S	ILMN_48692	XLKD1_PREDICTED	XM_219001.4	XM_219001.4		293186	109459263	XM_219001.4	Xlkd1_predicted	XP_219001.2	ILMN_1363923	0002650142	S	2282	CCCCCCGGAGGTATCATGCTGACACACAGACAGCTCAGACTTGGTAAAAG	1	-	168601939-168601988	1q33	PREDICTED: Rattus norvegicus extracellular link domain-containing 1 (predicted) (Xlkd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559938-S	ILMN_301682	HNF4A	NM_022180.1	NM_022180.1		25735	11559938	NM_022180.1	Hnf4a	NP_071516.1	ILMN_1354435	0002100128	S	1316	CAGCCATCACCACCAAGTGGCTCTGGATCTGAATCCTACAAGCTCCTGCC	3	+	154482700-154482749	3q42	Rattus norvegicus hepatocyte nuclear factor 4, alpha (Hnf4a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis [goid 6591] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IDA]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence ISS]; Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates [goid 7164] [evidence IDA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IDA]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane [goid 33159] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42524] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells [goid 45216] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of gluconeogenesis [goid 45722] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids [goid 45723] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50732] [evidence IDA]; Any process involved in the maintenance of an internal equilibrium of lipid within an organism or cell [goid 55088] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IPI]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence TAS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IPI]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tcf4; Hnf4	Tcf4; Hnf4
Rattus norvegicus	RefSeq	GI_62647847-S	ILMN_280882	ZFYVE20_PREDICTED	XM_001076679.1	XM_001076679.1		312562	109473943	XM_001076679.1	Zfyve20_predicted	XP_001076679.1	ILMN_1353801	0002340253	S	2440	CCCCTAACTGACAGCAGTGGGCAGGAACTGGGCAGAGTCTTTGGTAGCAT				4q34	PREDICTED: Rattus norvegicus zinc finger, FYVE domain containing 20 (predicted) (Zfyve20_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.18388	ILMN_161362	RN.18388	Rn.18388		Rn.18388		51866170	CR754213			ILMN_1530361	0003520408	S	298	ATTTTGCTCCTACAAATGATCAGATACTGAAGTCCCAAGTAATAGATCTT					CR754213 Rattus norvegicus muscle Sprague-Dawley Rattus norvegicus cDNA clone GP0AAA12ZG06, mRNA					
Rattus norvegicus	RefSeq	GI_62638425-S	ILMN_48929	LOC499000	XM_574292.1	XM_574292.1		499000	62638425	XM_574292.1	LOC499000	XP_574292.1	ILMN_1371967	0005290270	S	463	AGGTGACAAGTGGGACCCTGGAAATGGTGACCCAAGGAAAGGGAGGCAGC				1p11	PREDICTED: Rattus norvegicus similar to DHHC-containing protein 10 (LOC499000), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649784-S	ILMN_70029	MAP3K6_PREDICTED	XM_232732.4	XM_232732.4		313022	109475612	XM_232732.4	Map3k6_predicted	XP_232732.4	ILMN_1373466	0006420059	S	4074	ATGCAGAATTTGGAGAGCCATCTTGGCACAGCGAGCAGGAGCCACGTCGG	5	-	151873836-151873885	5q36	PREDICTED: Rattus norvegicus mitogen-activated protein kinase kinase kinase 6 (predicted) (Map3k6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164090-S	ILMN_293562	UQCRH	NM_001009480.1	NM_001009480.1		366448	57164090	NM_001009480.1	Uqcrh	NP_001009480.1	ILMN_1372306	0005890040	S	303	CATGCAGAGTCGCTTGCCTCAGCCTCGTCACTGGGAATCGGAACAGCTTG	5	+	136263428-136263477	5q36	Rattus norvegicus ubiquinol-cytochrome c reductase hinge protein (Uqcrh), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1 [goid 5750] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III [goid 6122] [evidence IC ]; The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III [goid 6122] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c [goid 8121] [evidence IEA]	MGC109658	MGC109658
Rattus norvegicus	RefSeq	GI_62648916-S	ILMN_272025	ZBTB5_PREDICTED	XM_001065117.1	XM_001065117.1		298084	109476349	XM_001065117.1	Zbtb5_predicted	XP_001065117.1	ILMN_1357571	0005390161	S	3577	GGGTCTGAGCTGTCCGGTGGCTTTCGTGAATTTCCGCCAGTAGTAAGCAG				5q22	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 5 (predicted) (Zbtb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576906-S	ILMN_278642	OLR233	NM_001000207.1	NM_001000207.1		293377	47576906	NM_001000207.1	Olr233	NP_001000207.1	ILMN_1353514	0003060139	S	716	CTACCTGTGGTTCCCACCTTATTGTTGTCATCCTTTTTTATGGGTCAGGG	1	-	164411282-164411331	1q33	Rattus norvegicus olfactory receptor 233 (Olr233), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr233; ratchr1-164507524-164506577_ORF	Olr233; ratchr1-164507524-164506577_ORF
Rattus norvegicus	RefSeq	GI_54400727-S	ILMN_298542	CCIN	NM_001005904.1	NM_001005904.1		298392	54400727	NM_001005904.1	Ccin	NP_001005904.1	ILMN_1370631	0000110161	S	1716	GCTGGACCAAAAGATAGGTGAATGGAAGACCCTTGCCTGCCCACCCGAGG	5	+	60447399-60447448	5q22	Rattus norvegicus calicin (Ccin), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94933	MGC94933
Rattus norvegicus	RefSeq	GI_27659491-S	ILMN_161719	LOC292072	XM_214704.1	XM_214704.1			27659491	XM_214704.1	LOC292072		ILMN_2040879	0002710546	S	789	GCCTATGGATCACCTGGAACCTTGCATTTTGTACGCTTGCCACACCCTCG					Rattus norvegicus similar to Adenine phosphoribosyltransferase (APRT) (LOC292072), mRNA.					
Rattus norvegicus	RefSeq	GI_62643646-S	ILMN_268435	RGD1561998_PREDICTED	XM_001061963.1	XM_001061963.1		502533	109466706	XM_001061963.1	RGD1561998_predicted	XP_001061963.1	ILMN_1356592	0006770093	S	631	GCCCTGCACCAGGCTATGCAGAGAAATGAACACATGCCTCAAGGATCAAG				2q31	PREDICTED: Rattus norvegicus similar to hypothetical protein C130079G13 (predicted) (RGD1561998_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665242-S	ILMN_62091	LOC497726	XM_579646.1	XM_579646.1		497726	62665242	XM_579646.1	LOC497726	XP_579646.1	ILMN_1349375	0000380176	S	2981	ATCTCCACAGACGCCACACGCATCCACATGAGCAAAAGTACAAATGGTTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_138518 (LOC497726), mRNA.					
Rattus norvegicus	RefSeq	GI_16758735-S	ILMN_298217	NLGN1	NM_053868.1	NM_053868.1		116647	16758735	NM_053868.1	Nlgn1	NP_446320.1	ILMN_1364761	0001990750	S	3762	GCTGTAATGGCACAGCAGAAGCTCATGCTGAAATTGCCAGTAAACCACAG	2	-	111189218-111189267	2q24	Rattus norvegicus neuroligin 1 (Nlgn1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 9278515] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The process by which synaptic vesicles are directed to specific destination membranes, mediated by molecules at the vesicle membrane and target membrane surfaces [goid 16080] [evidence ISS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [pmid 9278515] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The process by which synaptic vesicles are directed to specific destination membranes, mediated by molecules at the vesicle membrane and target membrane surfaces [goid 16080] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [pmid 9325340] [evidence IDA]; The process by which voltage-gated ion channels become localized to distinct subcellular domains in the neuron. Specific targeting, clustering, and maintenance of these channels in their respective domains are essential to achieve high conduction velocities of action potential propagation [goid 45161] [pmid 9278515] [evidence TAS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence ISS]	Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence ISS]; Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644562-S	ILMN_59357	LOC362059	XM_347024.2	XM_347024.2		362059	62644562	XM_347024.2	LOC362059	XP_347025.2	ILMN_1354908	0002120072	S	618	GCGCCATCGAGCAGAGAAGAACCAAACGTGAACGAATGCCGCTGAGGAAA					PREDICTED: Rattus norvegicus hypothetical LOC362059 (LOC362059), mRNA.					
Rattus norvegicus	RefSeq	GI_62646868-S	ILMN_62400	LOC500033	XM_575388.1	XM_575388.1		500033	62646868	XM_575388.1	LOC500033	XP_575388.1	ILMN_1373927	0004200129	S	679	CAAGAGGATGCCTGTGGCTGCTGGGAGTACAAATGAACAAAAGGTGGGGG				4q21	PREDICTED: Rattus norvegicus similar to EMeg32 protein (LOC500033), mRNA.					
Rattus norvegicus	RefSeq	GI_8393609-S	ILMN_276390	KPNB1	XM_001081365.1	XM_001081365.1		24917	109491766	XM_001081365.1	Kpnb1	XP_001081365.1	ILMN_1373492	0002350725	S	3290	ACCCGGAAGTGAGGAGTGTGCACGGATGCTGAATGTTTGGGAATGAGAGG				10q31	PREDICTED: Rattus norvegicus karyopherin (importin) beta 1 (Kpnb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane [goid 6610] [evidence ISS]; The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane [goid 6610] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_61889093-S	ILMN_53812	CCL5	NM_031116.2	NM_031116.2		81780	61889093	NM_031116.2	Ccl5	NP_112378.2	ILMN_1355610	0003610286	S	222	GCAGCAAGTGCTCCAACCTTGCAGTCGTCTTTGTCACTCGAAGGAACCGC	10	-	71606096-71606126:71608997-71609015	10q26	Rattus norvegicus chemokine (C-C motif) ligand 5 (Ccl5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus [goid 34612] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of viral genome replication [goid 45071] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of viral genome replication [goid 45071] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of viral genome replication [goid 45071] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence IEA]	Scya5; RANTES	Scya5; RANTES
Rattus norvegicus	RefSeq	GI_62660683-S	ILMN_278532	STK32B_PREDICTED	XM_001062946.1	XM_001062946.1		305431	109500815	XM_001062946.1	Stk32b_predicted	XP_001062946.1	ILMN_1371111	0005690377	S	1098	CCGAGAGAAACTCAGGAGGCAGCAGGGACATGATGGTCAGCTCTCAGACC				14q21	PREDICTED: Rattus norvegicus serine/threonine kinase 32B (predicted) (Stk32b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662291-S	ILMN_60739	LOC502043	XM_577475.1	XM_577475.1		502043	62662291	XM_577475.1	LOC502043	XP_577475.1	ILMN_1361896	0006840020	S	1261	GCCATGAGGTCTGCCTTGGACGATCCTACATCACAAAGCATCTGAGGAAG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L5 (LOC502043), mRNA.					
Rattus norvegicus	RefSeq	GI_62652703-S	ILMN_59901	RGD1311154_PREDICTED	XM_217075.4	XM_217075.4		300317	109480970	XM_217075.4	RGD1311154_predicted	XP_217075.4	ILMN_1362632	0000460377	S	790	CCCTGCTATTACAAGCCAGAGGCACCCGGATGTGAGCCCCCAGATCACCT	7	+	116388933-116388937:116389753-116389797	7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12242 (predicted) (RGD1311154_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758393-S	ILMN_281218	SMPD3	NM_053605.1	NM_053605.1		94338	16758393	NM_053605.1	Smpd3	NP_446057.1	ILMN_1360602	0004920047	S	4557	ACACAGGGGCAGTCACAGGGACCACTTGAATCCTAACCGGCTCTGCCTGT	19	-	36112591-36112640	19q12	Rattus norvegicus sphingomyelin phosphodiesterase 3, neutral (Smpd3), mRNA.	The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER [goid 137] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine, any of a class of phospholipids in which the amino group of sphingosine is in amide linkage with one of several fatty acids, while the terminal hydroxyl group of sphingosine is esterified to phosphorylcholine [goid 6684] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regulated release of a peptide hormone from secretory granules [goid 30072] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IEA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	cca1	cca1
Rattus norvegicus	RefSeq	GI_47577752-S	ILMN_301462	OLR1252	NM_001000454.1	NM_001000454.1		300577	47577752	NM_001000454.1	Olr1252	NP_001000454.1	ILMN_1352629	0001340408	S	584	ATGAGCTGGAGGTCTTTGTTGTTATAGGCATCAACATCCTTGTGCCCAGC	8	-	40771351-40771400	8q22	Rattus norvegicus olfactory receptor 1252 (Olr1252), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1252	Olr1252
Rattus norvegicus	RefSeq	GI_62651245-S	ILMN_54099	LOC500718	XM_580111.1	XM_580111.1		500718	62651245	XM_580111.1	LOC500718	XP_580111.1	ILMN_1368522	0006420014	S	1609	CTAGCACCTGGGAGACGGAGACAGGAGGATTGCTACAAGTCTGGAGTCAT					PREDICTED: Rattus norvegicus LOC500718 (LOC500718), mRNA.					
Rattus norvegicus	RefSeq	GI_14091769-S	ILMN_283436	GSK3B	NM_032080.1	NM_032080.1		84027	14091769	NM_032080.1	Gsk3b	NP_114469.1	ILMN_1349648	0000150762	S	1328	GCCTCAGATACTAATGCTGGAGACCGTGGACAGACCAATAACGCCGCTTC	11	-	64284878-64284921:64294622-64294627	11q21	Rattus norvegicus glycogen synthase kinase 3 beta (Gsk3b), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43227] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state [goid 320] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns [goid 7163] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; The specification and formation of anisotropic intracellular organization or cell growth patterns [goid 30010] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm [goid 46827] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with one of the p53 family of proteins [goid 2039] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA];  [goid 4696] [evidence IDA];  [goid 4696] [evidence TAS];  [goid 4696] [evidence ISS];  [goid 4696] [evidence IDA];  [goid 4696] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48156] [evidence IDA]; Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein [goid 50321] [evidence IEA]; Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein [goid 50321] [evidence ISS]; Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein [goid 50321] [evidence IDA]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639180-S	ILMN_64785	LOC499103	XM_574394.1	XM_574394.1		499103	62639180	XM_574394.1	LOC499103	XP_574394.1	ILMN_1371684	0002480725	S	759	CTACTTCTCGTTCCAGAACCCGTAAACATCTGGCTTCTGTTGACCCAGTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A830041P22 gene (LOC499103), mRNA.					
Rattus norvegicus	RefSeq	GI_62661312-S	ILMN_51954	OSGEP	XM_214163.4	XM_214163.4		290028	109501550	XM_214163.4	Osgep	XP_214163.2	ILMN_1369920	0000670128	S	858	GCGCACTGTGGCTCCAAAGAAGCCCTCATCGTCGGGGGAGTTGGATGTAA	15	-	26897336-26897340:26897525-26897569	15p14	PREDICTED: Rattus norvegicus O-sialoglycoprotein endopeptidase (Osgep), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8567331-S	ILMN_53892	CALCA	NM_017338.2	NM_017338.2		24241	76880487	NM_017338.2	Calca	NP_059034.1	ILMN_1366705	0006520059	S	319	AGGCTGAGGGCTCTAGCTTGGACAGCCCCAGATCTAAGCGGTGTGGGAAT	1	-	172688488-172688522:172689188-172689202	1q34	Rattus norvegicus calcitonin/calcitonin-related polypeptide, alpha (Calca), transcript variant 1, mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IEA]	The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence IEA]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence ISS]; The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure [goid 1944] [evidence IEA]; The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure [goid 1944] [evidence ISS]; The regulation of blood pressure mediated by detection of stimuli and a neurological response [goid 1976] [evidence IEA]; The regulation of blood pressure mediated by detection of stimuli and a neurological response [goid 1976] [evidence ISS]; An increase in the internal diameter of an artery, triggered by vasomotor suppression, during the chemoreceptor response to decreased blood pressure [goid 1984] [evidence ISS]; An increase in the internal diameter of an artery, triggered by vasomotor suppression, during the chemoreceptor response to decreased blood pressure [goid 1984] [evidence IEA]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IDA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of a neurophysiological process [goid 31645] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of a neurophysiological process [goid 31645] [evidence IEA]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 alpha production [goid 32730] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 alpha production [goid 32730] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-8 production [goid 32757] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-8 production [goid 32757] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IDA]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of adenylate cyclase activity [goid 45762] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence IMP]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence ISS]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within the cytosol of a cell or between the cytosol and its surroundings [goid 51480] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within the cytosol of a cell or between the cytosol and its surroundings [goid 51480] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence IEA]; The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure [goid 1944] [evidence IEA]; The regulation of blood pressure mediated by detection of stimuli and a neurological response [goid 1976] [evidence IEA]; An increase in the internal diameter of an artery, triggered by vasomotor suppression, during the chemoreceptor response to decreased blood pressure [goid 1984] [evidence IEA]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of a neurophysiological process [goid 31645] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 alpha production [goid 32730] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-8 production [goid 32757] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within the cytosol of a cell or between the cytosol and its surroundings [goid 51480] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence TAS]; Interacting selectively with a calcitonin receptor [goid 31716] [evidence TAS]; Interacting selectively with a calcitonin receptor [goid 31716] [evidence ISS]; Interacting selectively with a calcitonin receptor [goid 31716] [evidence IMP]; Interacting selectively with a calcitonin receptor [goid 31716] [evidence IEA]; Interacting selectively with a calcitonin receptor [goid 31716] [evidence ISS]; Interacting selectively with a calcitonin receptor [goid 31716] [evidence IEA]	CAL6; Calc; CGRP; calcitonin; Cal1; RATCAL6	CAL6; Calc; CGRP; calcitonin; Cal1; RATCAL6
Rattus norvegicus	RefSeq	GI_56119151-S	ILMN_265968	ABCB8	NM_001007796.1	NM_001007796.1		362302	56119151	NM_001007796.1	Abcb8	NP_001007797.1	ILMN_1366035	0003390390	S	1998	TGGCCAAGTCTGTGAGGCTGGGACCCACGAAGAACTCCTTCAAAAAGGCG	4	-	6134025-6134059:6134706-6134720	4q11	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 8 (Abcb8), nuclear gene encoding mitochondrial protein, mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	MGC93731	MGC93731
Rattus norvegicus	RefSeq	GI_62659701-S	ILMN_64916	RGD1561967_PREDICTED	XM_573497.2	XM_573497.2		498272	109498155	XM_573497.2	RGD1561967_predicted	XP_573497.1	ILMN_1364910	0002680446	S	1829	CTGCAGGACCTCTCCTGGACCGCTGACATTTGGACGTTCATGGAGTTTCA	13	-	85953445-85953494	13q24	PREDICTED: Rattus norvegicus similar to UDP-N-acteylglucosamine pyrophosphorylase 1 homolog (predicted) (RGD1561967_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978548-S	ILMN_289485	ATP1B1	NM_013113.1	NM_013113.1		25650	6978548	NM_013113.1	Atp1b1	NP_037245.1	ILMN_1370316	0005670524	S	2095	GTGCTCCGAAGCTGTGTCTGATCTGGATCTGCCCGTCACTTTGGCTAGTG	13	-	80214437-80214486	13q23	Rattus norvegicus ATPase, Na+/K+ transporting, beta 1 polypeptide (Atp1b1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	ATPBS	ATPBS
Rattus norvegicus	RefSeq	GI_47577578-S	ILMN_301306	OLR604	NM_001000656.1	NM_001000656.1		404855	47577578	NM_001000656.1	Olr604	NP_001000656.1	ILMN_1351916	0002230129	S	682	AAGACGCATTCAGCCAGTGGGCTTCGCAAGGCTTTCTCCACCTGTGCATC	3	-	71764949-71764998	3q24	Rattus norvegicus olfactory receptor 604 (Olr604), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence ISS]	Olr604	Olr604
Rattus norvegicus	RefSeq	GI_47576864-S	ILMN_294541	OLR215	NM_001000198.1	NM_001000198.1		293362	47576864	NM_001000198.1	Olr215	NP_001000198.1	ILMN_1364128	0001340041	S	885	GGAGGTCACTGGAGCTTTGAGGAGAGTCTTTGGGAAAAAGTTGTCAGTGC	1	+	164076022-164076071	1q33	Rattus norvegicus olfactory receptor 215 (Olr215), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr215	Olr215
Rattus norvegicus	RefSeq	GI_62661723-S	ILMN_57701	ESD_MAPPED	XM_214241.4	XM_214241.4		290401	109501877	XM_214241.4	Esd_mapped	XP_214241.4	ILMN_1371986	0001780132	S	711	GACGAGTTCCTCTCGAATGGCCAGTTACTCCCTGACAACTTCATCGCTGC	15	+	55571898-55571947	15q11	PREDICTED: Rattus norvegicus esterase D/formylglutathione hydrolase (mapped) (Esd_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_40786508-S	ILMN_288198	CXADRL1	NM_199406.1	NM_199406.1		361873	40786508	NM_199406.1	Cxadrl1	NP_955438.1	ILMN_1359359	0000940341	S	1323	GATCCTGTATCTTCAATGAAATATGCCTTGTGCTCCTGCACTCCACCAAC	2	-	9545013-9545062	2q11	Rattus norvegicus coxsackie virus and adenovirus receptor-like 1 (Cxadrl1), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649353-S	ILMN_70288	LOC502971	XM_578477.1	XM_578477.1		502971	62649353	XM_578477.1	LOC502971	XP_578477.1	ILMN_1373513	0004610097	S	2351	GTTCCCGGAGCACTTCCGCTCAGTTAGAACCAGTATCCCACCCTTCTACT				5q33	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434P0316 (LOC502971), mRNA.					
Rattus norvegicus	RefSeq	GI_62644558-S	ILMN_284687	FUBP1	NM_001037653.1	NM_001037653.1		654496	83320093	NM_001037653.1	Fubp1	NP_001032742.1	ILMN_1361276	0001780170	S	1647	GCAGCTTGGGCTGCCTATTATGCCCACTATTACCAGCAGCAGGCACAGCC				2q45	Rattus norvegicus far upstream element (FUSE) binding protein 1 (Fubp1), mRNA.			Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648588-S	ILMN_290062	RGD1565999_PREDICTED	XM_001069656.1	XM_001069656.1		297805	109476086	XM_001069656.1	RGD1565999_predicted	XP_001069656.1	ILMN_1355135	0006220403	S	1087	CCCCTATGCCCTGTGTTTTCTGAGACCCATTGCTACGTCAGGCTTACTTC				5q12	PREDICTED: Rattus norvegicus similar to short chain dehydrogenase reductase 9 (predicted) (RGD1565999_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664658-S	ILMN_291100	RGD1306286_PREDICTED	XM_001056478.1	XM_001056478.1		364902	109507593	XM_001056478.1	RGD1306286_predicted	XP_001056478.1	ILMN_1351159	0001940497	S	7469	GCATGGCCGCCTTCCTGTCAGTTCAGGTGCCTGCAGAAGACCAGATTCGT				18q12.3	PREDICTED: Rattus norvegicus similar to mKIAA1632 protein (predicted) (RGD1306286_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40786502-S	ILMN_264815	UNC5C	NM_199407.1	NM_199407.1		362049	40786502	NM_199407.1	Unc5c	NP_955439.1	ILMN_1350387	0001940402	S	9130	CACTCCGCTTGTCGCCTTGCTGTGCGGTGGAGGTGAGGGATACCAGCTTT	2	+	239721033-239721082	2q44	Rattus norvegicus unc-5 homolog C (C. elegans) (Unc5c), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A transmembrane receptor activity that responds to the netrin family of ligands and results in chemotaxis when activated [goid 5042] [evidence ISS]; A transmembrane receptor activity that responds to the netrin family of ligands and results in chemotaxis when activated [goid 5042] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758347-S	ILMN_283217	PRDX6	NM_053576.1	NM_053576.1		94167	16758347	NM_053576.1	Prdx6	NP_446028.1	ILMN_1351805	0000110446	S	986	CTGCAGGGTCTGTGATCAGCAAGGTAGTGTCAGTGTGGGCTCCATGCTAG	13	-	76824802-76824851	13q22	Rattus norvegicus peroxiredoxin 6 (Prdx6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The assembly of a bleb, a cell extension characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusions [goid 32060] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IDA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666230-S	ILMN_64225	LOC502464	XM_580248.1	XM_580248.1		502464	62666230	XM_580248.1	LOC502464	XP_580248.1	ILMN_1350456	0005690706	S	270	GAGAATCCCACCATCCCCAATGGCACAGCCAGAAGAACCATGCCAAGCAG					PREDICTED: Rattus norvegicus LOC502464 (LOC502464), mRNA.					
Rattus norvegicus	RefSeq	GI_19924074-S	ILMN_271105	LOC171573	NM_138537.1	NM_138537.1		171573	19924074	NM_138537.1	LOC171573	NP_612546.1	ILMN_1362856	0005340647	S	334	CTGCTGCAGTGCTGTTCCTTGAATCCTGGCAATGGAGCATGTCAGCGAGC	8	+	37774905-37774913:37776066-37776106	8q21	Rattus norvegicus spleen protein 1 precursor (LOC171573), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62665519	ILMN_52773	KIF7_PREDICTED	XM_218828.4	XM_218828.4		293047	109458946	XM_218828.4	Kif7_predicted	XP_218828.4	ILMN_1650959	0003520086	S	3830	GGCCCCATGTAGCAGCTCAGGAACCTCTCTGGCCATCTTCCCTTCTGGAA	1	-	135473323-135473372	1q31	PREDICTED: Rattus norvegicus kinesin family member 7 (predicted) (Kif7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640755-S	ILMN_52773	KIF7_PREDICTED	XM_218828.4	XM_218828.4		293047	109458946	XM_218828.4	Kif7_predicted	XP_218828.4	ILMN_1371808	0003390035	S	2771	AGAGGAATAGACGCAGTGGCAGCAATGGCTCTGTGGTGAGCCTGGAGCAG	1	-	135476889-135476938	1q31	PREDICTED: Rattus norvegicus kinesin family member 7 (predicted) (Kif7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649634-S	ILMN_62408	RGD1308876_PREDICTED	XM_342915.3	XM_342915.3		362597	109475465	XM_342915.3	RGD1308876_predicted	XP_342916.1	ILMN_1372997	0002030338	S	840	CTACTAAGCACTCTTCGTGGGGCAGGTGTGGGTGGGAACAGAATGCCAGC	5	+	145504626-145504675	5q36	PREDICTED: Rattus norvegicus similar to 2610027C15Rik protein (predicted) (RGD1308876_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576440-S	ILMN_275867	OLR894	NM_001000940.1	NM_001000940.1		405277	47576440	NM_001000940.1	Olr894	NP_001000940.1	ILMN_1359390	0003130026	S	106	GTCACTGGAAACCTGACTATCATCGTTTTGACCTTCGTGGACTCCCATCT	7	-	3295213-3295262	7q11	Rattus norvegicus olfactory receptor 894 (Olr894), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr894	Olr894
Rattus norvegicus	RefSeq	GI_62667406	ILMN_293167	GPC4	NM_001014108.1	NM_001014108.1		317322	62078948	NM_001014108.1	Gpc4	NP_001014130.1	ILMN_1650537	0006770204	S	2068	ATTCTGGGAAGAGTGCCAACGAGAAAGCTGACAGTGCCGGTGGTGCCCCT	X	-	138967103-138967152	Xq36	Rattus norvegicus glypican 4 (Gpc4), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_16758605-S	ILMN_276061	ARGBP2	NM_053770.1	NM_053770.1		114901	16758605	NM_053770.1	Argbp2	NP_446222.1	ILMN_1357635	0007000403	S	5861	GATCGCCCTTCACCACATCTCCACAGATCACAAGCTAAGGTGAATCTGGA	16	-	49722870-49722919	16q11	Rattus norvegicus Arg/Abl-interacting protein ArgBP2 (Argbp2), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IPI]			
Rattus norvegicus	RefSeq	GI_62658617-S	ILMN_264639	LRCH4_PREDICTED	XM_001068283.1	XM_001068283.1		360779	109497051	XM_001068283.1	Lrch4_predicted	XP_001068283.1	ILMN_1349727	0000070577	S	1900	TCTTAGAGGCCTGTCGGAAAATGGGTGTGCCAGAGGAGTCCCTGTGCCAG				12q12	PREDICTED: Rattus norvegicus leucine-rich repeats and calponin homology (CH) domain containing 4 (predicted) (Lrch4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659504-S	ILMN_51092	LOC498253	XM_573477.1	XM_573477.1		498253	62659504	XM_573477.1	LOC498253	XP_573477.1	ILMN_1366198	0000630242	S	408	AGGCACACCAGTAGTTCCTGTCTCTGTACCGTTCCAGTACCCCTGTACCC					PREDICTED: Rattus norvegicus similar to regulator of G-protein signalling like 2 (LOC498253), mRNA.					
Rattus norvegicus	RefSeq	GI_8393921-S	ILMN_279927	PCTP	NM_017225.1	NM_017225.1		29510	8393921	NM_017225.1	Pctp	NP_058921.1	ILMN_1369371	0002340736	S	1352	CTGCAAGCCCCAGGTTTCCGAAGACAGCGTGTGTGTAGTATGCTGACTGT	10	-	78400712-78400761	10q26	Rattus norvegicus phosphatidylcholine transfer protein (Pctp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence TAS]	Interacting selectively with a lipid [goid 8289] [evidence IEA]; Enables the directed movement of phosphatidylcholine into, out of, within or between cells. Phosphatidylcholine refers to a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 8525] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_47576908-S	ILMN_279607	OLR234	NM_001000208.1	NM_001000208.1		293379	47576908	NM_001000208.1	Olr234	NP_001000208.1	ILMN_1356175	0002850075	S	661	ATTGTCTCTACTGTGATCCAGATGCAGTCTGGAGAGGGGAGACTCAAGGC	1	+	164460512-164460561	1q33	Rattus norvegicus olfactory receptor 234 (Olr234), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr234	Olr234
Rattus norvegicus	RefSeq	GI_62643226-S	ILMN_60327	ARMC1_PREDICTED	XM_215537.4	XM_215537.4		294948	109464620	XM_215537.4	Armc1_predicted	XP_215537.2	ILMN_1366381	0002850021	S	2512	GGCCGTGAGACCATTATGTTCATTAACGTTGTGGCTTTCTGGAAGGAGGG	2	-	104228791-104228840	2q24	PREDICTED: Rattus norvegicus armadillo repeat containing 1 (predicted) (Armc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959245-S	ILMN_270028	AP3M2	NM_133305.1	NM_133305.1		140667	18959245	NM_133305.1	Ap3m2	NP_579839.1	ILMN_1357567	0000770546	S	2955	GCAGGGGACACTTCAGGTCACTTTCACAGGCTCTGGGGGATTCCGAGGTT	16	+	73705858-73705907	16q12.5	Rattus norvegicus adaptor-related protein complex 3, mu 2 subunit (Ap3m2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence NAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances within a cell [goid 46907] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93230	MGC93230
Rattus norvegicus	RefSeq	GI_62638882-S	ILMN_295097	SAPS1_PREDICTED	XM_001071295.1	XM_001071295.1		361502	109461182	XM_001071295.1	Saps1_predicted	XP_001071295.1	ILMN_1357553	0005670427	S	3608	GCTCTGGTGCAGATGCTCACATCCAGCCTTTCACTCAGGATCACCGTGGG				1q12	PREDICTED: Rattus norvegicus SAPS domain family, member 1 (predicted) (Saps1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47523969-S	ILMN_284587	OLR1718	NM_214460.1	NM_214460.1		405205	47523969	NM_214460.1	Olr1718	NP_999625.1	ILMN_1358323	0001240026	S	431	GGTCGTGGGGAATAGCTCATTGTGCATCTCTGGTCTACACCTTACTGCTC	20	-	1129199-1129248	20p12	Rattus norvegicus olfactory receptor 1718 (Olr1718), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or26; Olr1718	Or26; Olr1718
Rattus norvegicus	RefSeq	GI_62657334-S	ILMN_268978	ICT1_PREDICTED	XM_001081688.1	XM_001081688.1		303673	109492191	XM_001081688.1	Ict1_predicted	XP_001081688.1	ILMN_1359643	0006840075	S	721	GGAGTGGTGTCAGAAGGTTCCTTTGGAGGGAAGGCTGCAGGTCATCCAGG				10q32.3	PREDICTED: Rattus norvegicus immature colon carcinoma transcript 1 (predicted) (Ict1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643125-S	ILMN_55351	RGD1560629_PREDICTED	XM_574885.2	XM_574885.2		499561	109464569	XM_574885.2	RGD1560629_predicted	XP_574885.2	ILMN_1370742	0001050400	S	471	CGTTATTTTTGGTGTGCCCCAGATGATGCCACAGCTGGAGAAGAAACTTG	2	+	83700167-83700191:83707507-83707531	2q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930016P21 (predicted) (RGD1560629_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638742-S	ILMN_64509	LOC502267	XM_577728.1	XM_577728.1		502267	62638742	XM_577728.1	LOC502267	XP_577728.1	ILMN_1371777	0000360092	S	1940	CGCGAGCTGGCTAAAATCCTTGCTACTCCTGCAGATTAACCTTGTCATGC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502267), mRNA.					
Rattus norvegicus	RefSeq	GI_62666627-S	ILMN_63864	LOC503430	XM_578971.1	XM_578971.1		503430	62666627	XM_578971.1	LOC503430	XP_578971.1	ILMN_1354479	0001580176	S	555	AAGAAGGGTGGGGACAGGGCGGGACGAGTCCTGGAAACGCCCACAATGAT					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC503430), mRNA.					
Rattus norvegicus	RefSeq	GI_62653329-S	ILMN_70215	LOC300439	XM_238535.3	XM_238535.3		300439	62653329	XM_238535.3	LOC300439	XP_238535.3	ILMN_1350085	0002340332	S	2750	CTCCCCCGGAGGGTGGCTGCTCACGGGGCTTCTTTAGAGCTGTATGTTTT					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 25 (LOC300439), mRNA.					
Rattus norvegicus	RefSeq	GI_62641838-S	ILMN_284863	SLC22A19	XM_001072873.1	XM_001072873.1		286961	109463465	XM_001072873.1	Slc22a19	XP_001072873.1	ILMN_1352187	0001660605	S	1719	GAGGAAAAGCTCAAGAGAGGTAAAGAAAGATGCGGTTGCCAAAGTGACAC				1q43	PREDICTED: Rattus norvegicus solute carrier family 22 (organic anion transporter), member 19 (Slc22a19), mRNA.					
Rattus norvegicus	RefSeq	GI_62651111-S	ILMN_47742	RGD1565693_PREDICTED	XM_576079.2	XM_576079.2		500697	109478566	XM_576079.2	RGD1565693_predicted	XP_576079.1	ILMN_1358461	0003140154	S	1668	ACGGATGCTTGGCTACCCAGTGACACATTCCAAGGTGGAGGAACAAGACC	6	+	111797271-111797320	6q31	PREDICTED: Rattus norvegicus similar to GLE1-like, RNA export mediator isoform 1 (predicted) (RGD1565693_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665999-S	ILMN_274665	DCBLD1_PREDICTED	XM_001058071.1	XM_001058071.1		309773	109510145	XM_001058071.1	Dcbld1_predicted	XP_001058071.1	ILMN_1366034	0002570575	S	518	TTCTGAGGCTGGGCGATTTGAACATTGAGTCCAAGACCTGCGCTTCCGAC				20q11	PREDICTED: Rattus norvegicus discoidin, CUB and LCCL domain containing 1 (predicted) (Dcbld1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666001-S	ILMN_274665	DCBLD1_PREDICTED	XM_001058071.1	XM_001058071.1		309773	109510145	XM_001058071.1	Dcbld1_predicted	XP_001058071.1	ILMN_1353334	0005550575	S	1468	GAACCTGAGTATGCCACACCTATCGTGGAGAGGCACCTGCTGCGAGCTCA				20q11	PREDICTED: Rattus norvegicus discoidin, CUB and LCCL domain containing 1 (predicted) (Dcbld1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62461581-S	ILMN_48766	MAPK14	NM_031020.2	NM_031020.2		81649	62461581	NM_031020.2	Mapk14	NP_112282.2	ILMN_1352809	0001660338	S	3099	CAGTCCAGCTCCACGTCATCCCCTCACAATGGTTAGTAGCAACGTCTGGG	20	+	7000051-7000100	20p12	Rattus norvegicus mitogen activated protein kinase 14 (Mapk14), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope [goid 5623] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 44445] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 10601328] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 10601328] [evidence ISS]	A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; A series of molecular signals in which a stress-activated MAP kinase cascade relays one or more of the signals; MAP kinase cascades involve at least three protein kinase activities and culminate in the phosphorylation and activation of a MAP kinase [goid 51403] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [pmid 7914033] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [pmid 7914033] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence TAS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IDA];  [goid 8339] [evidence ISS];  [goid 8339] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 8339] [evidence ISS];  [goid 8339] [pmid 7914033] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Exip; RK; Prkm14; Sapk2A; Prkm15; p38; Hog; p38Hog; MGC105413; CSPB1; CSBP; Mxi2; Csbp2; Csbp1; p38alpha	Exip; RK; Prkm14; Sapk2A; Prkm15; p38; Hog; p38Hog; MGC105413; CSPB1; CSBP; Mxi2; Csbp2; Csbp1; p38alpha
Rattus norvegicus	RefSeq	GI_62652689-S	ILMN_59118	LOC315106	XM_235459.3	XM_235459.3		315106	62652689	XM_235459.3	LOC315106	XP_235459.1	ILMN_1363539	0005900408	S	1181	GCGTCTCATGACCACAGGGAAAATATCTGCCCGAAAGACTAGACAGGTAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210421G13 (LOC315106), mRNA.					
Rattus norvegicus	RefSeq	GI_56090476-S	ILMN_301492	THYN1	NM_001007661.1	NM_001007661.1		300470	56090476	NM_001007661.1	Thyn1	NP_001007662.1	ILMN_1360299	0005270438	S	846	GGATGGAGTGACCGCACCGAGATTTTCTGAGACAGCAGGAGAAAGCTTGC	8|NW_047806.1	+	181079-181128		Rattus norvegicus thymocyte nuclear protein 1 (Thyn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]			MGC72984	MGC72984
Rattus norvegicus	RefSeq	GI_62656899-A	ILMN_289227	SNX11	NM_001012012.1	NM_001012012.1		303493	58865601	NM_001012012.1	Snx11	NP_001012012.1	ILMN_1376452	0004850670	S	921	GGACCCTGCTGTGCCTTTGGATCCTGGTCAGCTAGACACAGTGTGGGGAA	10	-	85518057-85518106	10q31	Rattus norvegicus sorting nexin 11 (Snx11), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653470-S	ILMN_279953	KIRREL3_PREDICTED	XM_001057259.1	XM_001057259.1		315546	109484460	XM_001057259.1	Kirrel3_predicted	XP_001057259.1	ILMN_1356855	0004780333	S	3167	TGGAGGCTGAGAAATGACCCCGACCAAAGGAGTATTTGCCTGGGAGCCCG				8q21	PREDICTED: Rattus norvegicus kin of IRRE like 3 (Drosophila) (predicted), transcript variant 2 (Kirrel3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658676-S	ILMN_271761	ZAN_PREDICTED	XM_001076525.1	XM_001076525.1		304379	109497134	XM_001076525.1	Zan_predicted	XP_001076525.1	ILMN_1351980	0005420170	S	2623	GTAACCACTGTCACCACTGGAAAAACCGCTCTCCCGACAGAAGTGCCCAC				12q12	PREDICTED: Rattus norvegicus zonadhesin (predicted) (Zan_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651165-S	ILMN_50104	LOC500708	XM_580108.1	XM_580108.1		500708	62651165	XM_580108.1	LOC500708	XP_580108.1	ILMN_1360374	0002340180	S	717	CTGGTCCCCAGTGAGATGCAGCGAGCCACACATCTTGGGATGTCACAGCA					PREDICTED: Rattus norvegicus LOC500708 (LOC500708), mRNA.					
Rattus norvegicus	RefSeq	GI_62660300-S	ILMN_61636	IGJ_PREDICTED	XM_341195.2	XM_341195.2		360922	62660300	XM_341195.2	Igj_predicted	XP_341196.2	ILMN_1362274	0000380576	S	846	GTGGAGAGCTGGAGCTTCTGCACTCTATCCTAGTCTTTCTCACTGTGCAG				14p22	PREDICTED: Rattus norvegicus immunoglobulin joining chain (predicted) (Igj_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18266685-S	ILMN_271017	TXNL1	XM_001059942.1	XM_001059942.1		140922	109507405	XM_001059942.1	Txnl1	XP_001059942.1	ILMN_1360014	0003390731	S	466	GCTTACGAAAAGACCTGTCCTTCTTGGAGTCTGACTGCGACGAGCAGCTG				18q12.1	PREDICTED: Rattus norvegicus thioredoxin-like 1 (Txnl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction that interconverts reduced sulfide groups and oxidized disulfide bonds in a substrate [goid 15036] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62649085-S	ILMN_290698	LOC682605	XM_001062261.1	XM_001062261.1		682605	109476560	XM_001062261.1	LOC682605	XP_001062261.1	ILMN_1361155	0000460059	S	511	GACAATATCATTGACCTAACTAAGACTGATCGCTGTCTCCAGGCCCGAGG					PREDICTED: Rattus norvegicus similar to Major urinary protein precursor (MUP) (Alpha-2u-globulin) (Alpha(2)-euglobulin) (Allergen Rat n 1) (Rat n I) (LOC682605), mRNA.					
Rattus norvegicus	RefSeq	GI_62666452-S	ILMN_53963	RGD1563950_PREDICTED	XM_233308.4	XM_233308.4		298316	109510372	XM_233308.4	RGD1563950_predicted	XP_233308.4	ILMN_1364990	0002630504	S	3106	GTAGCTTTCATACGGTTTGTGCACCACACCCAAGGCAACCAGAGCTGTGG	X	+	7978226-7978275	Xq12	PREDICTED: Rattus norvegicus similar to NF-kappa-B-repressing factor (Transcription factor NRF) (predicted) (RGD1563950_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659004-S	ILMN_60269	POP5_PREDICTED	XM_213794.4	XM_213794.4		117241	109496017	XM_213794.4	Pop5_predicted	XP_213794.1	ILMN_1368760	0005340041	S	1071	GCTGTCTGCTGGACAGAGAGTCGGTTGAAGAGCTTTCGGACAGTGCTGGG	12	-	42645188-42645237	12q16	PREDICTED: Rattus norvegicus processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae) (predicted) (Pop5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21687156-S	ILMN_262498	KLRH1	NM_139187.2	NM_139187.2		246043	21687156	NM_139187.2	Klrh1	NP_631926.1	ILMN_1357811	0002100139	S	421	GGAAAAGACATGGGATGAAAGTGAGGCATCCTGCAGGCTCCTGGGTTCTC	4	-	167132626-167132675	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily H, member 1 (Klrh1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653607-S	ILMN_61622	LOC363056	XM_343384.2	XM_343384.2		363056	62653607	XM_343384.2	LOC363056	XP_343385.2	ILMN_1362271	0005080609	S	2391	TCCGATGGCCTGCACCCACGCGCTGCACAAGGAGTGTATCAAATTCTGGG				8q22	PREDICTED: Rattus norvegicus LOC363056 (predicted) (LOC363056), mRNA.					
Rattus norvegicus	RefSeq	GI_47576246-S	ILMN_289750	OLR1313	NM_001000794.1	NM_001000794.1		405078	47576246	NM_001000794.1	Olr1313	NP_001000794.1	ILMN_1360090	0005690324	S	29	TCACCTTGCTGGGTATCCCTGAAACACAGGGCCTGGAGAATGTCTTGCTC	8	+	42543769-42543818	8q22	Rattus norvegicus olfactory receptor 1313 (Olr1313), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1313	Olr1313
Rattus norvegicus	RefSeq	GI_6981581-S	ILMN_269947	SST	NM_012659.1	NM_012659.1		24797	6981581	NM_012659.1	Sst	NP_036791.1	ILMN_1363280	0003290167	S	231	GTCTGAGCCCAACCAGACAGAGAACGATGCCCTGGAGCCTGAGGATTTGC	11	+	79125882-79125931	11q23	Rattus norvegicus somatostatin (Sst), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Smst; SS-14; SS-28	Smst; SS-14; SS-28
Rattus norvegicus	RefSeq	GI_62638794-S	ILMN_67128	LOC499058	XM_574337.1	XM_574337.1		499058	62638794	XM_574337.1	LOC499058	XP_574337.1	ILMN_1370101	0002480332	S	1368	CCCTTTACCCATCGCTGTCGTCTTGGAAAGCACAGCAGAATCCATACTGG					PREDICTED: Rattus norvegicus similar to CDNA sequence BC029103 (LOC499058), mRNA.					
Rattus norvegicus	RefSeq	GI_62644340-S	ILMN_48453	LOC310761	XM_227557.3	XM_227557.3		310761	62644340	XM_227557.3	LOC310761	XP_227557.3	ILMN_1364891	0000460161	S	419	GTCAGTGTCCAAGAAGCCTAAATACCGGACACATGGCTTTGTTAAACAGG				2q34	PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (LOC310761), mRNA.					
Rattus norvegicus	RefSeq	GI_62656200-S	ILMN_53854	MAPK7	XM_340813.2	XM_340813.2		114509	62656200	XM_340813.2	Mapk7	XP_340814.2	ILMN_1362476	0001580113	S	2763	TGCAGGTTCATCTCAGACCCACCGTTCAGCCTTAAGCAGCCGCCTGAGCC					PREDICTED: Rattus norvegicus mitogen-activated protein kinase 7 (Mapk7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence EXP]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62661808-S	ILMN_268993	LOC686547	XM_001074155.1	XM_001074155.1		686547	109502804	XM_001074155.1	LOC686547	XP_001074155.1	ILMN_1357551	0004590452	S	4349	CTTCCTATGCCTGTGAGGATAATGAGTCTCTGGAGAAGCTGGAGAGAGCG					PREDICTED: Rattus norvegicus similar to TBC1 domain family member 4 (Akt substrate of 160 kDa) (AS160), transcript variant 1 (LOC686547), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649678-S	ILMN_268770	CLSPN_PREDICTED	XM_001058264.1	XM_001058264.1		298534	109477246	XM_001058264.1	Clspn_predicted	XP_001058264.1	ILMN_1356996	0005910538	S	4114	AAAGCTGTGCTTCAAAAACTCGCTACCCTGTCTGACCTCAACCCCAGCGC				5q36	PREDICTED: Rattus norvegicus claspin homolog (Xenopus laevis) (predicted) (Clspn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653537-S	ILMN_288129	RGD1565120_PREDICTED	XM_001064837.1	XM_001064837.1		500982	109484549	XM_001064837.1	RGD1565120_predicted	XP_001064837.1	ILMN_1374389	0004850093	S	793	ACCCGGTTCTTTCCGGGCGAGAAGACTCGCGGAGACTCTAGACTGTTCCT				8q22	PREDICTED: Rattus norvegicus similar to brain-specific homeodomain protein (predicted) (RGD1565120_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718147-S	ILMN_68034	LOC292602	XM_218275.2	XM_218275.2		292602	62718147	XM_218275.2	LOC292602	XP_218275.2	ILMN_1364107	0003450041	S	1149	CAGTCTGAGGACATTGGGGATGGCCACAACACTACTGATGTAAATGGTGG					PREDICTED: Rattus norvegicus similar to zinc finger and SCAN domain containing 4 (LOC292602), mRNA.					
Rattus norvegicus	RefSeq	GI_62667181-S	ILMN_47964	LOC503448	XM_578998.1	XM_578998.1		503448	62667181	XM_578998.1	LOC503448	XP_578998.1	ILMN_1358406	0000540167	S	473	CGTTATGGAAGGGGAAGTAGAAGGAGGGGGTGGGGGACTTGGGTACAAGG					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC503448), mRNA.					
Rattus norvegicus	RefSeq	GI_62651853-S	ILMN_62950	LOC500811	XM_580124.1	XM_580124.1		500811	62651853	XM_580124.1	LOC500811	XP_580124.1	ILMN_1354355	0006860605	S	707	CAGGCCTAAAGATCCCTGGACCCAGCAGTGTGTGAAGGCTTGGGACAGAG					PREDICTED: Rattus norvegicus LOC500811 (LOC500811), mRNA.					
Rattus norvegicus	RefSeq	GI_62648736-S	ILMN_61252	LOC500423	XM_580065.1	XM_580065.1		500423	62648736	XM_580065.1	LOC500423	XP_580065.1	ILMN_1372005	0003710059	S	453	CGGTTACGCTTTTCTGGATGGTTTTCCTTCGGAGTGCGACCCTCAGCGCG					PREDICTED: Rattus norvegicus LOC500423 (LOC500423), mRNA.					
Rattus norvegicus	RefSeq	GI_18158432-S	ILMN_300339	PSMB8	NM_080767.1	NM_080767.1		24968	18158432	NM_080767.1	Psmb8	NP_542945.1	ILMN_1362728	0007100348	S	932	AGGCTATGGAGACATCTTTGTTTACCCTCTCACTCAGCCAGCCCTCACGG	20	-	4786303-4786352	20p12	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7) (Psmb8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence TAS]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence NAS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Ring10; Lmp7	Ring10; Lmp7
Rattus norvegicus	RefSeq	GI_62658082-S	ILMN_70227	LOC288136	XM_221491.2	XM_221491.2		288136	62658082	XM_221491.2	LOC288136	XP_221491.2	ILMN_1359035	0006040358	S	1347	GACGCGTGTGCTCCTTCCAGTAAATCCAGGCCAACTAGTGTCAGTAGCTC				11q21	PREDICTED: Rattus norvegicus similar to DnaJ homolog subfamily B member 6 (Heat shock protein J2) (HSJ-2) (MRJ) (mDj4) (LOC288136), mRNA.					
Rattus norvegicus	RefSeq	GI_47576468-S	ILMN_283123	OLR1601	NM_001000087.1	NM_001000087.1		289261	47576468	NM_001000087.1	Olr1601	NP_001000087.1	ILMN_1366865	0003170717	S	677	TGAGGATCCCTACAGCACAGGGACGCCACAAAGCCTTCTCCACCTGCACC	13	+	90101790-90101839	13q24	Rattus norvegicus olfactory receptor 1601 (Olr1601), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1601	Olr1601
Rattus norvegicus	RefSeq	GI_62653283-S	ILMN_68050	LOC500952	XM_576364.1	XM_576364.1		500952	62653283	XM_576364.1	LOC500952	XP_576364.1	ILMN_1366480	0004540605	S	402	GCAGAGCCCACTTGCGATGAAAGGACTAGGAAAGTCCCATTGCAGCCCTC					PREDICTED: Rattus norvegicus similar to KIAA1545 protein (LOC500952), mRNA.					
Rattus norvegicus	RefSeq	GI_47576430-S	ILMN_269723	OLR1584	NM_001000081.1	NM_001000081.1		289247	47576430	NM_001000081.1	Olr1584	NP_001000081.1	ILMN_1369016	0004760537	S	588	GGTTCATGGGGCAGTGATTGGTGTGGCCACTGGATGCAATTTTCTCCTCA	13	+	89783032-89783081	13q24	Rattus norvegicus olfactory receptor 1584 (Olr1584), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1584	Olr1584
Rattus norvegicus	RefSeq	GI_47576530-S	ILMN_282328	OLR1630	NM_001000092.1	NM_001000092.1		290005	47576530	NM_001000092.1	Olr1630	NP_001000092.1	ILMN_1373882	0003870348	S	886	GCTGTCATGGGAAAAATTGCTGCCCAGTACCTCCGACCACCCAAAATTGC	15	-	26559971-26560020	15p14	Rattus norvegicus olfactory receptor 1630 (Olr1630), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1630	Olr1630
Rattus norvegicus	RefSeq	GI_62718417-S	ILMN_299486	LOC301772	XM_229238.3	XM_229238.3		301772	62718417	XM_229238.3	LOC301772	XP_229238.3	ILMN_1367077	0005270398	S	590	GAGGCGAGGGGTCCAAAAAGATCGGCAAAGTCATTTACCAAGTTCCAGGC	Un|NW_047889.1	-	325726-325775		PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC301772), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62646933-S	ILMN_65413	RBM28_PREDICTED	XM_231550.4	XM_231550.4		312182	109471836	XM_231550.4	Rbm28_predicted	XP_231550.2	ILMN_1364296	0005910026	S	2852	GCAGCACCTGAGAACTGTCTGTCCCTGGCGGAGGGGCTAACTGGAGATAT	4	-	55996511-55996560	4q22	PREDICTED: Rattus norvegicus RNA binding motif protein 28 (predicted) (Rbm28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506414-S	ILMN_296143	AVPR2	NM_019136.1	NM_019136.1		25108	9506414	NM_019136.1	Avpr2	NP_062009.1	ILMN_1373218	0007050746	S	887	GGGATCCGGAAGCTCCTCTGGAAAGACCCCCCTTTGTGTTGCTCATGCTG	X	+	159823098-159823121:159823283-159823308	Xq37	Rattus norvegicus arginine vasopressin receptor 2 (Avpr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon [goid 32609] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence TAS]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence TAS]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62649544-S	ILMN_299238	RGD1563015_PREDICTED	XM_001073668.1	XM_001073668.1		500537	109477120	XM_001073668.1	RGD1563015_predicted	XP_001073668.1	ILMN_1374734	0002810142	S	887	GAGAGGAAAGCATAACATCACCACTCCTGCTGGCTCTGTGGGCTGTACGC				5q36	PREDICTED: Rattus norvegicus RGD1563015 (predicted) (RGD1563015_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645008-S	ILMN_60064	LOC311889	XM_231169.2	XM_231169.2		311889	62645008	XM_231169.2	LOC311889	XP_231169.2	ILMN_1356508	0004780494	S	320	GGGCCTTGCAAAGACGACCCAAGGATCTCAGGGAAGAAGAGTGGAACCAG				3p11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (LOC311889), mRNA.					
Rattus norvegicus	RefSeq	GI_62660542-S	ILMN_265273	TBC1D19_PREDICTED	XM_001055693.1	XM_001055693.1		289657	109500668	XM_001055693.1	Tbc1d19_predicted	XP_001055693.1	ILMN_1366837	0002810154	S	1835	CAATGGCCCTACACACCAAATACTGCGCTTGCATGCTGACGGTTGCCAAG				14q11	PREDICTED: Rattus norvegicus TBC1 domain family, member 19 (predicted) (Tbc1d19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651268-S	ILMN_271111	TRAF3_PREDICTED	XM_001071666.1	XM_001071666.1		362788	109479945	XM_001071666.1	Traf3_predicted	XP_001071666.1	ILMN_1353682	0000780750	S	1877	GGGGTTGAACAGGTCTGTCTTCACGAAGGTCCTCGCCCTCAGAAAGGACC				6q32	PREDICTED: Rattus norvegicus Tnf receptor-associated factor 3 (predicted) (Traf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643596-S	ILMN_55263	LOC310269	XM_226983.3	XM_226983.3		310269	62643596	XM_226983.3	LOC310269	XP_226983.3	ILMN_1363335	0006040278	S	4429	AGGAAGACCATGATAACAGCAGGGGAATGGGAAGGCAGGCACCGATGGCC				2q24	PREDICTED: Rattus norvegicus similar to MEGF6 (predicted) (LOC310269), mRNA.					
Rattus norvegicus	RefSeq	GI_62662146-I	ILMN_52564	ANXA11_PREDICTED	XM_573849.1	XM_573849.1		290527	62662146	XM_573849.1	Anxa11_predicted	XP_573849.1	ILMN_1376036	0005570603	S	2685	CTGCCAGCGTGTTTTCTTCCGCTTTATGACTCAGAGATCCCGGCCCTGTT				16p16	PREDICTED: Rattus norvegicus annexin A11 (predicted) (Anxa11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663969-S	ILMN_280800	ARHGAP21_PREDICTED	XM_001074395.1	XM_001074395.1		307178	109506233	XM_001074395.1	Arhgap21_predicted	XP_001074395.1	ILMN_1364451	0000510100	S	6428	ACACAGGTGGATACAGAACTCCCATTCCTTAGTCATTCCAGGCGGATCTG				17q12.3	PREDICTED: Rattus norvegicus Rho GTPase activating protein 21 (predicted) (Arhgap21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652501-S	ILMN_49444	DDEF1_PREDICTED	XM_235296.4	XM_235296.4		314961	109480749	XM_235296.4	Ddef1_predicted	XP_235296.4	ILMN_1372152	0003170731	S	4029	CGTTACTGAACATGCAACATTAGCAGAGGTGGGTTCTGTGCTCCGGGTGG	7	-	101303545-101303594	7q33	PREDICTED: Rattus norvegicus development and differentiation enhancing (predicted) (Ddef1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663900-S	ILMN_60282	LOC361275	XM_341560.2	XM_341560.2		361275	62663900	XM_341560.2	LOC361275	XP_341561.2	ILMN_1356446	0002680092	S	2264	GTCTGGCAGTCGGATCAATGGCTACAGCGAGTCCCATGGAAACACTTGGG				17q12.3	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40283 (predicted) (LOC361275), mRNA.					
Rattus norvegicus	RefSeq	GI_39930332-S	ILMN_281051	RET	NM_012643.1	NM_012643.1		24716	39930332	NM_012643.1	Ret	NP_036775.1	ILMN_1372073	0002680528	S	4143	GCTGCTATGGTACGTGTTTTGGTCTCCTCCGTTCTGACACAACTCCCGTG	4	-	154449067-154449116	4q42	Rattus norvegicus ret proto-oncogene (Ret), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IEA]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The morphogenesis of an embryonic epithelium into a tube-shaped structure [goid 1838] [evidence IEA]; The morphogenesis of an embryonic epithelium into a tube-shaped structure [goid 1838] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence ISS]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence IEA]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62719325-S	ILMN_60310	GUCY2D	NM_130737.3	NM_130737.3		113911	62719325	NM_130737.3	Gucy2d	NP_570093.1	ILMN_1352322	0006380315	S	3178	ATACAGAATCCACGTCAGCCGAAACACTGTCCAGGCCCTGCTTAGCCTTG				1q32	Rattus norvegicus guanylate cyclase 2d (Gucy2d), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27668203-S	ILMN_58150	MMRN2_PREDICTED	XM_224646.2	XM_224646.2		306288	109503087	XM_224646.2	Mmrn2_predicted	XP_224646.1	ILMN_1353977	0006020601	S	2551	CGTGGCATCTACCTGTTTGCAGTGAGCGTTACATTTGGTCCAGGCCCCGG	16	+	10051476-10051525	16p16	PREDICTED: Rattus norvegicus multimerin 2 (predicted) (Mmrn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665515-S	ILMN_52831	LOC498973	XM_574260.1	XM_574260.1		498973	62665515	XM_574260.1	LOC498973	XP_574260.1	ILMN_1352974	0002810014	S	734	GTCATACAGACACTAAGAGAACACAAATGCCAGCCCAGGTTACTGTATCC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498973), mRNA.					
Rattus norvegicus	RefSeq	GI_62078534-S	ILMN_268585	UBQLNL	NM_001013899.1	NM_001013899.1		293287	62078534	NM_001013899.1	Ubqlnl	NP_001013921.1	ILMN_1349359	0006550112	S	1885	CTCTTCCCATTCCCTACAAGCCCCCGAGGTTCGTTTCAGCAAAGAGATGG	1	-	161985259-161985308	1q32	Rattus norvegicus ubiquilin-like (Ubqlnl), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62656376-S	ILMN_63140	DHX33_PREDICTED	XM_213370.4	XM_213370.4		287464	109488349	XM_213370.4	Dhx33_predicted	XP_213370.4	ILMN_1353878	0002630487	S	1896	AGGGGACATGGAGAGTGTCCGCCGTTGCCTGGCTCACAGCCTCTTTATGA	10	-	57890725-57890774	10q24	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 33 (predicted) (Dhx33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645028-S	ILMN_264874	GPR21_PREDICTED	XM_001054010.1	XM_001054010.1		311911	109469809	XM_001054010.1	Gpr21_predicted	XP_001054010.1	ILMN_1372922	0003390411	S	3120	GGGCGAGTGAAAGGTGCCAGCTCAGTCAAGGGGGTTTCAGATGAGGACAC				3q11	PREDICTED: Rattus norvegicus G protein-coupled receptor 21 (predicted) (Gpr21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718035-S	ILMN_62224	LOC501280	XM_576695.1	XM_576695.1		501280	62718035	XM_576695.1	LOC501280	XP_576695.1	ILMN_1359055	0000380458	S	662	TCCAGACCCTTTCTGCCACTTAGCATGCATATAATCAGACTGGAACGGGG					PREDICTED: Rattus norvegicus similar to myosin regulatory light chain-like (LOC501280), mRNA.					
Rattus norvegicus	RefSeq	GI_19424299-S	ILMN_299957	GCHFR	NM_133595.1	NM_133595.1		171128	19424299	NM_133595.1	Gchfr	NP_598279.1	ILMN_1368610	0003870411	S	566	CCATGTGCAGAAGGCAAGCTACCCTGAGGATGGTCCCTGGATCCTACACA	3	+	105687257-105687306	3q35	Rattus norvegicus GTP cyclohydrolase I feedback regulator (Gchfr), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances [goid 9890] [evidence IEA]; Any process that stops or reduces the activity of the enzyme GTP cyclohydrolase I [goid 43105] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45428] [evidence NAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IPI]; Interacting selectively with the enzyme GTP cyclohydrolase I [goid 43106] [evidence IPI]; Interacting selectively with the enzyme GTP cyclohydrolase I [goid 43106] [evidence IDA]	MGC108604	MGC108604
Rattus norvegicus	RefSeq	GI_47577534-S	ILMN_268777	OLR673	NM_001000351.1	NM_001000351.1		295880	47577534	NM_001000351.1	Olr673	NP_001000351.1	ILMN_1368233	0002120538	S	665	TCACTCTGAGAGCCCACAGTTATGAAGGTCGACGGAAAGCTCTTTCTACC	3	-	73309668-73309717	3q24	Rattus norvegicus olfactory receptor 673 (Olr673), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr673	Olr673
Rattus norvegicus	RefSeq	GI_62659884-S	ILMN_53673	RGD1564043_PREDICTED	XM_223014.4	XM_223014.4		289335	109498285	XM_223014.4	RGD1564043_predicted	XP_223014.3	ILMN_1367735	0001190044	S	1678	AGAGCCTTGAACCTTGGAGAGAGGCCACAGGAGGACAGAGCTTGGGCACA	13	+	98950479-98950528	13q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E430021N18 (predicted) (RGD1564043_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47155560-S	ILMN_284785	DNAJC7	NM_213625.1	NM_213625.1		303536	47155560	NM_213625.1	Dnajc7	NP_998790.1	ILMN_1358044	0006200377	S	1334	CTCGTTATGACAGTGGACAGGATCTGGATGAGGAGGGCATGAATATGGGC	10	-	89528214-89528263	10q32.1	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 7 (Dnajc7), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]	MGC105609; CCRP	MGC105609; CCRP
Rattus norvegicus	RefSeq	GI_62650414-S	ILMN_276029	RGD1311605_PREDICTED	XM_001068870.1	XM_001068870.1		298841	109479067	XM_001068870.1	RGD1311605_predicted	XP_001068870.1	ILMN_1351721	0001850605	S	738	ATCCACCACGCTAGCCATCTCCATTCTACTTTGGGGAACCCAGCGCCGGA				6q14	PREDICTED: Rattus norvegicus similar to apoptosis related protein APR-3; p18 protein (predicted) (RGD1311605_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646260-S	ILMN_268448	DHX35_PREDICTED	XM_001068289.1	XM_001068289.1		362260	109471229	XM_001068289.1	Dhx35_predicted	XP_001068289.1	ILMN_1373991	0002350044	S	2810	GACCCCGTGGGGCTTCTCTTTAGCAGGGATTCACCACAGTTTAGATGCCC				3q42	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 35 (predicted) (Dhx35_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662493-S	ILMN_54568	LOC361133	XM_346939.2	XM_346939.2		361133	62662493	XM_346939.2	LOC361133	XP_346940.1	ILMN_1350041	0000450075	S	76	AGCGGGAAAAGAGAAACGAGAGGGGCCAGAGGGCAAAATGGACGCAAGAC					PREDICTED: Rattus norvegicus hypothetical LOC361133 (LOC361133), mRNA.					
Rattus norvegicus	RefSeq	GI_62647452-S	ILMN_67490	RPIA_PREDICTED	XM_342707.3	XM_342707.3		362383	109472155	XM_342707.3	Rpia_predicted	XP_342708.2	ILMN_1375214	0000380520	S	1587	TGTTGGAAGCCCCTGGTGGAAACGCCCTCTGGCAGCAAGCACACAGCATT	4	-	103935113-103935162	4q32	PREDICTED: Rattus norvegicus ribose 5-phosphate isomerase A (predicted) (Rpia_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642764-S	ILMN_60059	LOC502500	XM_577981.1	XM_577981.1		502500	62642764	XM_577981.1	LOC502500	XP_577981.1	ILMN_1354277	0001050181	S	2025	CTGCCAGTAGAGCCCAAACCAGAAGAAATGGTGCCCAGAGAGAGCGAGCA					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502500), mRNA.					
Rattus norvegicus	RefSeq	GI_6981239-S	ILMN_289346	MYL3	NM_012606.1	NM_012606.1		24585	6981239	NM_012606.1	Myl3	NP_036738.1	ILMN_1353893	0004050647	S	536	CGCTGGGTGAGAGGCTGACAGAAGACGAGGTAGAGAAACTGATGGCTGGT	8	+	115145093-115145098:115146155-115146198	8q32	Rattus norvegicus myosin, light polypeptide 3 (Myl3), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line [goid 31672] [evidence IEA]; The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line [goid 31672] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IEA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IEA]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; Any process that modulates the frequency, rate or extent of striated muscle contraction [goid 6942] [evidence IEA]; Any process that modulates the frequency, rate or extent of striated muscle contraction [goid 6942] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IEA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IDA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric actin, also known as G-actin [goid 3785] [evidence IEA]; Interacting selectively with monomeric actin, also known as G-actin [goid 3785] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Mylc1v; MGC93574	Mylc1v; MGC93574
Rattus norvegicus	RefSeq	GI_62644739-S	ILMN_284079	TRAF2_PREDICTED	XM_001077727.1	XM_001077727.1		311786	109469556	XM_001077727.1	Traf2_predicted	XP_001077727.1	ILMN_1373728	0004850484	S	1493	CAGTGGCTGCCCCCTCTTCTGCCCGGTGTCCAAGATAGAGGCCAAGAATT				3p13	PREDICTED: Rattus norvegicus Tnf receptor-associated factor 2 (predicted) (Traf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090541-A	ILMN_298471	KLF2	NM_001007684.1	NM_001007684.1		306330	56090541	NM_001007684.1	Klf2	NP_001007685.1	ILMN_1376868	0005220440	S	795	CGCCACGCACACTTGCAGCTACACCAACTGCGGCAAGACCTACACCAAGA	16	-	17942558-17942607	16p14	Rattus norvegicus Kruppel-like factor 2 (lung) (Klf2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Klf2; Lklf	Klf2; Lklf
Rattus norvegicus	RefSeq	GI_62642758-S	ILMN_59786	LOC502497	XM_580250.1	XM_580250.1		502497	62642758	XM_580250.1	LOC502497	XP_580250.1	ILMN_1374972	0000940619	S	504	GGTCCTCACAGCTGTTGCATAGAAAGAGGCTGCCCTCCAGGGTTTTGCAG					PREDICTED: Rattus norvegicus LOC502497 (LOC502497), mRNA.					
Rattus norvegicus	RefSeq	GI_62663269-S	ILMN_51761	SPTLC1_PREDICTED	XM_341495.3	XM_341495.3		361213	109504675	XM_341495.3	Sptlc1_predicted	XP_341496.3	ILMN_1365055	0001340079	S	2325	CTCGCTGCACAGGCAGAGGAATGGGGCCTCTAACCGTCGTTTTCGGATGT	17	+	17614529-17614578	17p14	PREDICTED: Rattus norvegicus serine palmitoyltransferase, long chain base subunit 1 (predicted) (Sptlc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647126-S	ILMN_51722	RGD1560283_PREDICTED	XM_342669.3	XM_342669.3		362348	109471959	XM_342669.3	RGD1560283_predicted	XP_342670.1	ILMN_1353190	0006380273	S	168	CTCTCATCAATGACCAGTGGGTGGTGTCTGCAGCTCACTGTTACAAGTCC	4	-	69023824-69023825:69024696-69024743	4q22	PREDICTED: Rattus norvegicus similar to trypsinogen 8 (predicted) (RGD1560283_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641561-S	ILMN_69234	NKX6-2_PREDICTED	XM_219447.4	XM_219447.4		309095	109459560	XM_219447.4	Nkx6-2_predicted	XP_219447.2	ILMN_1369820	0000840440	S	1218	GGCGTGAGGCGCGGAGTGCGGGGTTTGGGCCGATCACTTTGTATAATCAA	1	-	199397378-199397427	1q41	PREDICTED: Rattus norvegicus NK6 transcription factor related, locus 2 (Drosophila) (predicted) (Nkx6-2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083628-S	ILMN_295596	CUL5	NM_022683.1	NM_022683.1		64624	12083628	NM_022683.1	Cul5	NP_073174.1	ILMN_1369400	0002970148	S	2419	GGCTGATCGAGCACAAGTACATCAGGAGGGATGAGGCCGACATCAACACC	8	-	57081022-57081071	8q24	Rattus norvegicus cullin 5 (Cul5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity [goid 31461] [evidence IEA]; A ubiquitin ligase complex in which a cullin from the Cul5 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an elongin-BC adaptor and a SOCS/BC box protein [goid 31466] [evidence TAS]	Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEP]; The regulation of the levels, transport, and metabolism of calcium ions within the cytosol of a cell or between the cytosol and its surroundings [goid 51480] [evidence IMP]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 16931] [evidence TAS]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660173-S	ILMN_51657	BMP2K	XM_573559.2	XM_573559.2		498333	109499492	XM_573559.2	Bmp2k	XP_573559.2	ILMN_1366429	0003130435	S	3175	CCCCTTCGGTGCTGCTCCATTCCCTTCTAAACAGTAGACACTTCAGGTGG	14	-	13937690-13937703:13937704-13937739	14p22	PREDICTED: Rattus norvegicus BMP-2 inducible kinase (Bmp2k), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660175-S	ILMN_51657	BMP2K	XM_573559.2	XM_573559.2		498333	109499492	XM_573559.2	Bmp2k	XP_573559.2	ILMN_1372461	0006520373	S	1101	TGGTTCAGGGACCCACTCAGCAGCCACCACAGCAGCATAGAGTTCTCCAG	14	-	13967448-13967497	14p22	PREDICTED: Rattus norvegicus BMP-2 inducible kinase (Bmp2k), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657380-S	ILMN_60914	ST6GALNAC1	XM_221248.4	XM_221248.4		287920	109489414	XM_221248.4	St6galnac1	XP_221248.4	ILMN_1358337	0000060064	S	1379	ATCTCTGTGACAAGGTGAGCGCCTATGGCTTCATCACCCAGGGCCACGAG	10	-	106872124-106872160:106872310-106872322	10q32.3	PREDICTED: Rattus norvegicus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 (St6galnac1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9312] [evidence ISS]	Catalysis of the reaction: CMP-N-acetylneuraminate + glycano-1,3-(N-acetyl-alpha-D-galactosaminyl)-glycoprotein = CMP + glycano-(2,6-alpha-N-acetylneuraminyl)-(N-acetyl-D-galactosaminyl)-glycoprotein [goid 1665] [evidence ISS]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662587-A	ILMN_277631	MFAP3L	NM_001012049.1	NM_001012049.1		306424	58865673	NM_001012049.1	Mfap3l	NP_001012049.1	ILMN_1376616	0002470242	S	1704	ATCTGGAGTGCTGGGGTACAGAACTGATAAGACGGAGCAGGGGTCTGTCC	16	-	32751636-32751685	16p12	Rattus norvegicus microfibrillar-associated protein 3-like (Mfap3l), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62665083	ILMN_297759	CC2D1A	NM_001013869.1	NM_001013869.1		288908	62078472	NM_001013869.1	Cc2d1a	NP_001013891.1	ILMN_1650981	0002340364	S	2545	TGGCCTTTGACCAAGAGCGGCTAGAAAGGAAGATCCTGGCCCTGAGGCAG	19	+	25709675-25709706:25709792-25709809	19q11	Rattus norvegicus coiled-coil and C2 domain containing 1A (Cc2d1a), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576052-S	ILMN_282803	OLR964	NM_001001073.1	NM_001001073.1		405963	47576052	NM_001001073.1	Olr964	NP_001001073.1	ILMN_1360419	0004010484	S	879	GCAAGTCAGGCGAGCCTTTATGAGCATGGTAAGGAAGATGGTGTTTTTTC	7	+	5178841-5178890	7q11	Rattus norvegicus olfactory receptor 964 (Olr964), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr964	Olr964
Rattus norvegicus	RefSeq	GI_62650655-S	ILMN_47741	NOVA1	XM_234098.4	XM_234098.4		298992	109478154	XM_234098.4	Nova1	XP_234098.2	ILMN_1370933	0002060053	S	3085	GAGTGTGATGCTCCATGTCTGAATTTCGTCCAGCCTCTCTCTGAACTGTG	6	-	66197310-66197359	6q21	PREDICTED: Rattus norvegicus neuro-oncological ventral antigen 1, transcript variant 2 (Nova1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655274-S	ILMN_54109	RNF11_PREDICTED	XM_237327.4	XM_237327.4		316552	109486283	XM_237327.4	Rnf11_predicted	XP_237327.4	ILMN_1356160	0006860390	S	2127	TTGTTCAGTGTTCATAACCTTGCTTAGTTTCCCAGTGGATCCCATGATGG	9	-	80183667-80183716	9q34	PREDICTED: Rattus norvegicus ring finger protein 11 (predicted) (Rnf11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560045-S	ILMN_287499	CYB5A	NM_022245.1	NM_022245.1		64001	11560045	NM_022245.1	Cyb5a	NP_071581.1	ILMN_1361209	0004200056	S	404	TGGGTGATCCCAGCCATCTCAGCCCTGGTGGTAGCTCTGATGTATCGCCT	18	+	81452260-81452309	18q12.3	Rattus norvegicus cytochrome b5 type A (microsomal) (Cyb5a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [pmid 14561759] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IEP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	MGC108694	MGC108694
Rattus norvegicus	RefSeq	GI_62078922-S	ILMN_298646	DZIP1L	NM_001014095.1	NM_001014095.1		315952	62078922	NM_001014095.1	Dzip1l	NP_001014117.1	ILMN_1359074	0001240022	S	3310	GGTGAAGGGATATGCAAAACTAACCAGGACACCATTCCACCCTGCCCCGG	8	+	104542010-104542059	8q31	Rattus norvegicus DAZ interacting protein 1-like (Dzip1l), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1311430	RGD1311430
Rattus norvegicus	RefSeq	GI_62652631-S	ILMN_262837	RGD1563870_PREDICTED	XM_001074700.1	XM_001074700.1		500895	109482456	XM_001074700.1	RGD1563870_predicted	XP_001074700.1	ILMN_1355445	0005360427	S	637	GGCCTGGCAGAGGCTTTGTTGAATCGTGGGCTGCTGGCAAAGGAAGGCTA				7q34	PREDICTED: Rattus norvegicus similar to CG3104-PA, isoform A (predicted) (RGD1563870_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.6249	ILMN_281432	CRAT	NM_001004085.2	NM_001004085.2		311849	54020749	NM_001004085.2	Crat	NP_001004085.1	ILMN_1530370	0004560377	S	1369	TTCAACATCACACCTGAGATCAAGAATGACATAGAGAAGGCCAAACAGAA	3	-	9450866-9450915	3p12	Rattus norvegicus carnitine acetyltransferase (Crat), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence TAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + carnitine = CoA + O-acetylcarnitine [goid 4092] [evidence IDA]; Catalysis of the reaction: acetyl-CoA + carnitine = CoA + O-acetylcarnitine [goid 4092] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94385	MGC94385
Rattus norvegicus	RefSeq	GI_54020749-S	ILMN_281432	CRAT	NM_001004085.2	NM_001004085.2		311849	54020749	NM_001004085.2	Crat	NP_001004085.1	ILMN_1355604	0000730725	S	2479	GGAAATACCCAGGGACCAGGAGTCAGAGGACTATCTATCGATGAGGGGCC	3	-	9447786-9447835	3p12	Rattus norvegicus carnitine acetyltransferase (Crat), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence TAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + carnitine = CoA + O-acetylcarnitine [goid 4092] [evidence IDA]; Catalysis of the reaction: acetyl-CoA + carnitine = CoA + O-acetylcarnitine [goid 4092] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94385	MGC94385
Rattus norvegicus	RefSeq	GI_62644072-S	ILMN_276158	ZFP697_PREDICTED	XM_001064717.1	XM_001064717.1		295310	109467259	XM_001064717.1	Zfp697_predicted	XP_001064717.1	ILMN_1369858	0003140592	S	1357	GTTAACCACTTGCGCGTGCACACCGGGGAGAAGCCCTTCAGCTGCGGCCA				2q34	PREDICTED: Rattus norvegicus zinc finger protein 697 (predicted) (Zfp697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641203	ILMN_51707	RGD1309578_PREDICTED	XM_341916.2	XM_341916.2		361637	62641203	XM_341916.2	RGD1309578_predicted	XP_341917.2	ILMN_1649853	0005220181	S	2324	CAAGAATTCAGCAACGAGTCCCTGCTCCCAAACCCCATGGGAGAGAGAGC				1q35	PREDICTED: Rattus norvegicus similar to Aa2-174 (predicted) (RGD1309578_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656103-S	ILMN_48561	RGD1309585_PREDICTED	XM_340803.3	XM_340803.3		360531	109488124	XM_340803.3	RGD1309585_predicted	XP_340804.3	ILMN_1353760	0002370707	S	857	TCCAGCTACAGGTGAACACTCTCCGACGCTACAAACGGCACTACAAGCTG	10	+	43402502-43402551	10q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11526 (predicted) (RGD1309585_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646420-S	ILMN_61333	LOC502693	XM_578190.1	XM_578190.1		502693	62646420	XM_578190.1	LOC502693	XP_578190.1	ILMN_1352815	0004230364	S	14	CCCAGTGTGGGCGTCAGAGCTGGAACAGGTTGGAGAGCATCTGTATGAAC					PREDICTED: Rattus norvegicus similar to S-antigen precursor - malaria parasite (Plasmodium falciparum) (strain NF7/Ghana) (LOC502693), mRNA.					
Rattus norvegicus	RefSeq	GI_62641723-S	ILMN_282195	ZDHHC24	NM_001039100.1	NM_001039100.1		293665	84993240	NM_001039100.1	Zdhhc24	NP_001034189.1	ILMN_1374351	0000110463	S	705	GAGTGGGCTCGGGGTCAACACTCCTACGACCTGGGCATGAGCCACAACCT	1	+	207498339-207498388	1q43	Rattus norvegicus zinc finger, DHHC domain containing 24 (Zdhhc24), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865425-A	ILMN_264094	MBD1	NM_001011924.1	NM_001011924.1		291439	58865425	NM_001011924.1	Mbd1	NP_001011924.1	ILMN_1376815	0002190619	S	2113	CCGTCTAGTTTCCTGGACTGCATTGCCAGTTTTGCCTGGGATCCCGATTC	18	+	71082356-71082405	18q12.2	Rattus norvegicus methyl-CpG binding domain protein 1 (Mbd1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650164-S	ILMN_67244	SLC35E2_PREDICTED	XM_233711.4	XM_233711.4		313765	109475924	XM_233711.4	Slc35e2_predicted	XP_233711.4	ILMN_1371375	0003830053	S	1142	TGGTCACAGCCACCAGCCAAGGCCCAAACGATGACACAGAGCCACTGGTT	5	+	172453517-172453566	5q36	PREDICTED: Rattus norvegicus solute carrier family 35, member E2 (predicted) (Slc35e2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661466-S	ILMN_66159	EFS_PREDICTED	XM_237944.4	XM_237944.4		290212	109501608	XM_237944.4	Efs_predicted	XP_237944.3	ILMN_1369822	0002190687	S	1930	GCAGCTCTCATGTCCAGTACCCAGGCCAACCAGCCGCCATGTCTCTTTGT	15	-	33019521-33019570	15p13	PREDICTED: Rattus norvegicus embryonal Fyn-associated substrate (predicted) (Efs_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666447-S	ILMN_269963	NDUFA1_PREDICTED	XM_001063150.1	XM_001063150.1		363441	109512517	XM_001063150.1	Ndufa1_predicted	XP_001063150.1	ILMN_1350827	0003990053	S	237	GGTGTCCACTGCGTACATCCACAAGTTCACCAACGGGGGCAAGGAAAAGA				Xq11	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (predicted) (Ndufa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647314-S	ILMN_61162	LOC500135	XM_575487.1	XM_575487.1		500135	62647314	XM_575487.1	LOC500135	XP_575487.1	ILMN_1372875	0003290288	S	27	GAAGCAAGTAGGTGCCCTTCCGGGTTCCGTGCCGAATCTGCGGTTGCAGA				4q24	PREDICTED: Rattus norvegicus similar to Glycyl-tRNA synthetase (LOC500135), mRNA.					
Rattus norvegicus	Unigene	Rn.11455	ILMN_160931	RN.11455	Rn.11455		Rn.11455		49495470	CO387879			ILMN_1530321	0004120735	S	263	GACTCTGTTTTAGTATTCTGAGATTGTTAGTATGAACTTGGCAATGGAAA					AGENCOURT_26623295 NIH_MGC_253 Rattus norvegicus cDNA clone IMAGE:7305010 5', mRNA					
Rattus norvegicus	RefSeq	GI_47576318-S	ILMN_280574	OLR1520	NM_001000714.1	NM_001000714.1		404963	47576318	NM_001000714.1	Olr1520	NP_001000714.1	ILMN_1370545	0004070292	S	733	CTGGCTGTGGTGGCTCTCTTCTATGGGACGCTTGGTATGGTGTATCTGAG	10	+	61659536-61659585	10q24	Rattus norvegicus olfactory receptor 1520 (Olr1520), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1520	Olr1520
Rattus norvegicus	RefSeq	GI_6978736-A	ILMN_281379	CYP1B1	NM_012940.1	NM_012940.1		25426	6978736	NM_012940.1	Cyp1b1	NP_037072.1	ILMN_1376635	0000670180	S	4580	CTTTTGCTGGTCACCATCTTCATCAGAGTATCCACCTCCTGTCAGGGCAG	6	-	2545814-2545863	6q11	Rattus norvegicus cytochrome P450, family 1, subfamily b, polypeptide 1 (Cyp1b1), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IDA]; The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 8210] [evidence IMP]; The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 9404] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern [goid 18894] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641016-S	ILMN_65483	LOC499213	XM_574501.1	XM_574501.1		499213	62641016	XM_574501.1	LOC499213	XP_574501.1	ILMN_1365399	0004920148	S	1491	GCAGAGAATCCAGTGTCCTTGGCACAGCCTACTGCTGACCAGAGCATGGG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC499213), mRNA.					
Rattus norvegicus	RefSeq	GI_62656627-S	ILMN_283010	NXN_PREDICTED	XM_001080610.1	XM_001080610.1		360577	109491337	XM_001080610.1	Nxn_predicted	XP_001080610.1	ILMN_1369001	0006660441	S	1696	GGGATCAGTACACACAACCCTAAGCCAGAGGGAACTCTCCCGTGACACCC				10q26	PREDICTED: Rattus norvegicus nucleoredoxin (predicted), transcript variant 2 (Nxn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639023-S	ILMN_56093	LOC297949	XM_232841.3	XM_232841.3		297949	62639023	XM_232841.3	LOC297949	XP_232841.3	ILMN_1369164	0002650463	S	1025	GTCAAGGGCACCTTCTTCTGAAGATGTCCCAGTTCACAAGACCAACCTGC				1q21	PREDICTED: Rattus norvegicus similar to zinc finger and SCAN domain containing 4 (LOC297949), mRNA.					
Rattus norvegicus	RefSeq	GI_47575868-S	ILMN_299659	HDGF	NM_053707.2	NM_053707.2		114499	47575868	NM_053707.2	Hdgf	NP_446159.1	ILMN_1358138	0005670450	S	1583	TTGGGCCAGGACCTGAAGAGAGCTGAGAGTCGAAGGATCAACTGATTGGC	2	+	179991745-179991794	2q34	Rattus norvegicus hepatoma-derived growth factor (Hdgf), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642563-S	ILMN_47811	LOC502393	XM_577872.1	XM_577872.1		502393	62642563	XM_577872.1	LOC502393	XP_577872.1	ILMN_1350257	0005050551	S	633	CCTCGCATGCCCTTCATCGGGAAGATGGAACCCTTTGGAAATACCGAGGC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502393), mRNA.					
Rattus norvegicus	RefSeq	GI_28461126-S	ILMN_60768	UGT1A8	NM_175846.2	NM_175846.2		301595	89276784	NM_175846.2	Ugt1a8	NP_787040.2	ILMN_1363636	0003870113	S	494	CCGTGGTCTTCAGCGGGGGAATATTTTGCCACTACCTTGATGAGGGTGCC	9	+	87017522-87017571	9q35	Rattus norvegicus UDP glycosyltransferase 1 family, polypeptide A8 (Ugt1a8), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The modification of a protein by amino acid glucuronidation [goid 18411] [evidence TAS]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence TAS]	Ugt1; Ugt1a9	Ugt1; Ugt1a9
Rattus norvegicus	RefSeq	GI_47577532-S	ILMN_291367	OLR502	NM_001000311.1	NM_001000311.1		295763	47577532	NM_001000311.1	Olr502	NP_001000311.1	ILMN_1354902	0000610070	S	39	CCTAGTGGGTATCACTGACTCATCCGAGCTACAGGTCCCACTGTTTGGAC	3	-	69623544-69623593	3q24	Rattus norvegicus olfactory receptor 502 (Olr502), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr502	Olr502
Rattus norvegicus	RefSeq	GI_34882832-S	ILMN_275460	LOC367485	XM_346161.2	XM_346161.2		367485	62718538	XM_346161.2	LOC367485	XP_346162.2	ILMN_1363464	0005080735	S	157	ACAAGGTGCAGGCCAACGAGGAAGAGGAGCGGCTGAATAGAGAACTGGAG	Un|NW_047912.1	+	51156-51205		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC367485), mRNA.					
Rattus norvegicus	RefSeq	GI_62650796-S	ILMN_54907	LOC500667	XM_580103.1	XM_580103.1		500667	62650796	XM_580103.1	LOC500667	XP_580103.1	ILMN_1373391	0004010180	S	984	ACACAGGGAGGTTGAGCTGGTGTCTAACGAGAGCCTTCATACCTGCTGAC					PREDICTED: Rattus norvegicus LOC500667 (LOC500667), mRNA.					
Rattus norvegicus	RefSeq	GI_62661748-S	ILMN_263694	RGD1560137_PREDICTED	XR_008828.1	XR_008828.1		290372	109502742	XR_008828.1	RGD1560137_predicted		ILMN_1362307	0003360369	S	332	GCTATGGTCGCTCCTCAAAGGACTATTCTCCCCAAAGTCTTCAGCCGTGC				15q11	PREDICTED: Rattus norvegicus similar to expressed sequence AU021034 (predicted) (RGD1560137_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57528263-S	ILMN_280233	MCCC1	NM_001009653.1	NM_001009653.1		294972	57528263	NM_001009653.1	Mccc1	NP_001009653.1	ILMN_1365662	0003120403	S	2182	GTGAACTGTGTCCCCAGAGAAATGGTCTACTGCACAGCGCCTTACCTGTC	2	-	122416814-122416863	2q25	Rattus norvegicus methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) (Mccc1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions [goid 9374] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC95141	MGC95141
Rattus norvegicus	RefSeq	Rn.15587	ILMN_280233	MCCC1	NM_001009653.1	NM_001009653.1		294972	57528263	NM_001009653.1	Mccc1	NP_001009653.1	ILMN_1530393	0001740239	S	411	TATGGAGTTTGCTGAATTTTGTAAGCAAGAAGGAATTATTTTTATAGGTC	2	-	122460344-122460393	2q25	Rattus norvegicus methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) (Mccc1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions [goid 9374] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC95141	MGC95141
Rattus norvegicus	RefSeq	GI_62647698-S	ILMN_56112	LOC500232	XM_580049.1	XM_580049.1		500232	62647698	XM_580049.1	LOC500232	XP_580049.1	ILMN_1352031	0003130408	S	459	GGCAGGACCTGACACTCTGAGGATACACGACTGAGGGCAGCCTATGCTAG					PREDICTED: Rattus norvegicus LOC500232 (LOC500232), mRNA.					
Rattus norvegicus	RefSeq	GI_62641146-S	ILMN_49018	RGD1565926_PREDICTED	XM_346994.3	XM_346994.3		361629	109459268	XM_346994.3	RGD1565926_predicted	XP_346995.3	ILMN_1352092	0002190044	S	624	GGCACCGGAGGGAAGCAGCATTGGAGTCCTAGTGTACTGACAAGAGTGGG	1	+	168929941-168929990	1q33	PREDICTED: Rattus norvegicus RGD1565926 (predicted) (RGD1565926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114319-S	ILMN_263955	SLPIL2	NM_001008872.1	NM_001008872.1		408229	57114319	NM_001008872.1	Slpil2	NP_001008872.1	ILMN_1370338	0005900075	S	252	GAAGTCTGGGAGTTGCCTCAGATTTGCAGTACCATGTCGGCCGCTTCCCC	3	-	155290580-155290629	3q42	Rattus norvegicus antileukoproteinase-like 2 (Slpil2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648156-S	ILMN_55091	LOC500316	XM_575666.1	XM_575666.1		500316	62648156	XM_575666.1	LOC500316	XP_575666.1	ILMN_1367241	0004010288	S	1251	CTCAGAGCATATCCACCGGCAACCAGGCGAAGATACCAGAAAAAGGTCGC				4q42	PREDICTED: Rattus norvegicus similar to proacrosin-binding protein (LOC500316), mRNA.					
Rattus norvegicus	RefSeq	GI_62645512-S	ILMN_62667	LOC362186	XM_342486.2	XM_342486.2		362186	62645512	XM_342486.2	LOC362186	XP_342487.2	ILMN_1370143	0006040324	S	2471	GCTCATCCGAGAAAACAGACTGAGAGTGGATACTGGTGTCGCCTATTGCC				3q33	PREDICTED: Rattus norvegicus similar to Kinesin family member 18A (LOC362186), mRNA.					
Rattus norvegicus	RefSeq	GI_62654496-S	ILMN_59813	CMYA1_PREDICTED	XM_236702.4	XM_236702.4		316071	109484097	XM_236702.4	Cmya1_predicted	XP_236702.4	ILMN_1349157	0003360139	S	5361	TCCCATGCTAAGGCAGTTCCTCCACAGTCCCTCCAGGTTCAACAGCGACC	8	-	124995987-124996036	8q32	PREDICTED: Rattus norvegicus cardiomyopathy associated 1 (predicted) (Cmya1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643867-S	ILMN_69061	RGD1560263_PREDICTED	XM_574989.2	XM_574989.2		499670	109465230	XM_574989.2	RGD1560263_predicted	XP_574989.1	ILMN_1349755	0000780088	S	1434	GGTGTGTAAGATACACGCTTCCAGACAGAACTGTACGTGCCACAGTTTGC	2	-	189589083-189589132	2q34	PREDICTED: Rattus norvegicus similar to nuclear receptor binding factor 2 (predicted) (RGD1560263_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078510-S	ILMN_291152	KLKBL4	NM_001013888.1	NM_001013888.1		291846	62078510	NM_001013888.1	Klkbl4	NP_001013910.1	ILMN_1352066	0006400369	S	1465	TGTACTATGACTACTACGGTGGGGAGGCGGGGGAAGGCAGGGCTGTGGCT	19	+	9954495-9954544	19p13	Rattus norvegicus plasma kallikrein-like protein 4 (Klkbl4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]	Klkbl4	Klkbl4
Rattus norvegicus	RefSeq	GI_47576596-S	ILMN_295155	OLR1666	NM_001000108.1	NM_001000108.1		291929	47576596	NM_001000108.1	Olr1666	NP_001000108.1	ILMN_1363420	0005890673	S	777	CCTCAGTTCTACATGGACACAGGCTTCTTGGGCAGGAGTGTTTGCTTCTG	19	-	23193241-23193290	19q11	Rattus norvegicus olfactory receptor 1666 (Olr1666), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr19-23198893-23197955_ORF; Olr1666	ratchr19-23198893-23197955_ORF; Olr1666
Rattus norvegicus	RefSeq	GI_62650743-S	ILMN_268474	BTBD5_PREDICTED	XM_001080070.1	XM_001080070.1		299103	109479448	XM_001080070.1	Btbd5_predicted	XP_001080070.1	ILMN_1356333	0002370324	S	1493	GGGAGACGGTTGCCTCCATGGCTGATAAGAGGATTCACTTTGGCGTTGGA				6q24	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 5 (predicted) (Btbd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079162-S	ILMN_267502	ATG9A	NM_001014218.1	NM_001014218.1		363254	62079162	NM_001014218.1	Atg9a	NP_001014240.1	ILMN_1368406	0006450458	S	3948	CTCCCCCAGTTCTGCTCGGCTGTGGAAGGTAAACTTATGCCGAAGGTGGC	9	-	74463740-74463789	9q33	Rattus norvegicus ATG9 autophagy related 9 homolog A (S. cerevisiae) (Atg9a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A double-membrane-bounded vesicle in which endogenous cellular material is sequestered; known as autophagosome in yeast [goid 5776] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence ISS]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		MGC105908	MGC105908
Rattus norvegicus	RefSeq	GI_62657840-S	ILMN_57235	RGD1559779_PREDICTED	XM_573274.2	XM_573274.2		498073	109493216	XM_573274.2	RGD1559779_predicted	XP_573274.1	ILMN_1366887	0002120402	S	853	CCTGAGGAACCACAAATCATACCCCAGAGAGACTATGCCTTCATTGGACC	11	+	51401865-51401914	11q21	PREDICTED: Rattus norvegicus similar to testes development-related NYD-SP17 (predicted) (RGD1559779_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46048524-S	ILMN_266709	CYP4A10	NM_153307.1	NM_153307.1		50549	46048524	NM_153307.1	Cyp4a10	NP_695219.1	ILMN_1356098	0001580070	S	1027	CCCTAAGCACCAACAAAGATGCAGAGAGGAAGTTCAGAGTGTCCTGGGGG	5	+	135908844-135908893	5q36	Rattus norvegicus cytochrome P450, family 4, subfamily a, polypeptide 10 (Cyp4a10), mRNA.			Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.28077	ILMN_160518	RN.28077	Rn.28077		Rn.28077		46871041	CN542885			ILMN_1530312	0004010324	S	138	ATTCCAAACTCCAGTGACATAGACATTGAATTTTTTATCCTTTAGGAAAT					UI-R-EB1-clp-g-04-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone UI-R-EB1-clp-g-04-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_42491371-S	ILMN_293064	ERMP1	NM_184050.2	NM_184050.2		373544	42491371	NM_184050.2	Ermp1	NP_908939.2	ILMN_1373829	0002450181	S	4912	AGATCCCCCACCCTGTCTTGCTGTGAAGGAGGTTAGACCACAAGCCAGCC	1	-	233327087-233327136	1q52	Rattus norvegicus endoplasmic reticulum metallopeptidase 1 (Ermp1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652653-S	ILMN_292008	BOP1	NM_001024250.1	NM_001024250.1		300050	66730442	NM_001024250.1	Bop1	NP_001019421.1	ILMN_1364860	0000070095	S	2218	TCAGGAGGCCTGGAGAGGGTGCGTGTCCCTCACACAGAATCGATAGAGAG	7	-	114500370-114500419	7q34	Rattus norvegicus block of proliferation 1 (Bop1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence ISS]; The formation of the constituents of the large ribosomal subunit, their assembly, and their transport to the sites of protein synthesis [goid 42273] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any complex of RNA and protein [goid 43021] [evidence ISS]	MGC109114	MGC109114
Rattus norvegicus	RefSeq	GI_25140982-S	ILMN_280666	ERC2	NM_170787.1	NM_170787.1		259269	25140982	NM_170787.1	Erc2	NP_740768.1	ILMN_1365902	0006860609	S	2301	GGAGCTGATGAATGCCTTGGAGAAGACCAGACAGGAACTGGACGCCACCA	16	+	3428774-3428823	16p16	Rattus norvegicus ELKS/RAB6-interacting/CAST family member 2 (Erc2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [pmid 12923177] [evidence NAS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [pmid 12163476] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [pmid 12163476] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 12163476] [evidence TAS]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IPI]; The biosynthesis of a synapse [goid 7416] [pmid 12163476] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12163476] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 12163476] [evidence NAS]	ERC2; CAST	ERC2; CAST
Rattus norvegicus	RefSeq	GI_62078670-S	ILMN_298086	CUEDC1	NM_001013971.1	NM_001013971.1		303419	62078670	NM_001013971.1	Cuedc1	NP_001013993.1	ILMN_1367656	0002940672	S	1645	GCTTCTTCAGCCACAGTCCAGCCTAGCCACTGCCGCTTTCCACAGGACTT	10	+	76487992-76488041	10q26	Rattus norvegicus CUE domain containing 1 (Cuedc1), mRNA.					
Rattus norvegicus	RefSeq	GI_8394404-S	ILMN_298651	SLC7A5	NM_017353.1	NM_017353.1		50719	8394404	NM_017353.1	Slc7a5	NP_059049.1	ILMN_1365729	0002570133	S	3031	AGGGCAAGTCTTGGTCCACGTTCATGGTGCTGACCCAGGCCCTCTGAGAA	19	-	52121105-52121154	19q12	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 (Slc7a5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence ISS]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence IEA]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence IEA]; Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence ISS]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]	TA1; E16	TA1; E16
Rattus norvegicus	RefSeq	GI_62648819-S	ILMN_65420	UBAP2_PREDICTED	XM_232901.4	XM_232901.4		313169	109474733	XM_232901.4	Ubap2_predicted	XP_232901.4	ILMN_1356127	0001340397	S	3965	GTCCAGCATAAGCCTGGTGCCTATATGTCTGCGCACAGCAGGGGCTTCTG	5	-	58610656-58610705	5q22	PREDICTED: Rattus norvegicus ubiquitin-associated protein 2 (predicted) (Ubap2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17939349-S	ILMN_294381	CHST10	NM_080397.1	NM_080397.1		140568	17939349	NM_080397.1	Chst10	NP_536322.1	ILMN_1368596	0006840093	S	2516	CTGCCTGGGGTTGAGAGGAATTGTGCCAGTTTTTCCTAGAGGTGACAGCC	9	-	37851861-37851910	9q21	Rattus norvegicus carbohydrate sulfotransferase 10 (Chst10), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence ISS]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence ISS]; Catalysis of the synthesis of the HKK-1 carbohydrate epitope; adds a sulfate group to a precursor, GlcA-beta-(1,3)-Gal-beta-(1,4)-GlcNAc-beta-(1->R), forming sulfo-3GlcA-beta-(1,3)-Gal-beta-(1,4)-GlcNAc-beta-(1->R) [goid 16232] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Hnk-1st	Hnk-1st
Rattus norvegicus	RefSeq	GI_62659327-S	ILMN_271923	SOX13_PREDICTED	XM_001060642.1	XM_001060642.1		289026	109498624	XM_001060642.1	Sox13_predicted	XP_001060642.1	ILMN_1374539	0006350440	S	1688	AGGGCCTGGACCCCAACATGCCTGTCATCATCAATACCTGCAGTCTCCGG				13q13	PREDICTED: Rattus norvegicus SRY (sex determining region Y)-box 13 (predicted) (Sox13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576130	ILMN_276044	OLR1386	NM_214834.1	NM_214834.1		287237	47576130	NM_214834.1	Olr1386	NP_999999.1	ILMN_1650711	0004590546	S	882	AAACAGGGAGGTGATGGGGGCTCTGAGAAAAGGGCTGGGCCGTTGCAAGG	10	+	34304803-34304852	10q21	Rattus norvegicus olfactory receptor 1386 (Olr1386), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1386	Olr1386
Rattus norvegicus	RefSeq	GI_46485430-S	ILMN_287658	ANKRA2	NM_207595.1	NM_207595.1		294679	46485430	NM_207595.1	Ankra2	NP_997478.1	ILMN_1363126	0000780114	S	1476	CTCCATCTTGTTTCTCTCCACTCCTGTATTAACTTTGACTTTCACAGGAC	2	+	28864381-28864430	2q12	Rattus norvegicus ankyrin repeat, family A (RFXANK-like), 2 (Ankra2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence ISS]	MGC94130; ANKRA	MGC94130; ANKRA
Rattus norvegicus	RefSeq	GI_62663198-S	ILMN_269683	TXNDC15	NM_001024998.1	NM_001024998.1		307180	68163436	NM_001024998.1	Txndc15	NP_001020169.1	ILMN_1365031	0004850605	S	1393	AAGCATGGGCTAGGACAGGAAGTGTGGGCTACGATGGGGAGCATGGGCTA	17	-	14938373-14938422	17p14	Rattus norvegicus thioredoxin domain containing 15 (Txndc15), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]		MGC109343	MGC109343
Rattus norvegicus	RefSeq	GI_62656204-S	ILMN_264247	GRAP	NM_001025749.1	NM_001025749.1		363616	71043783	NM_001025749.1	Grap	NP_001020920.1	ILMN_1365380	0002760047	S	674	CTGGGCTTCTTCCCACGGAGCTATGTGCAACCGGTACACTTGTGACCCCA	10	+	47830611-47830655:47830656-47830660	10q23	Rattus norvegicus GRB2-related adaptor protein (Grap), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC112733	MGC112733
Rattus norvegicus	RefSeq	GI_62660984-S	ILMN_70144	LOC360999	XM_341274.2	XM_341274.2		360999	62660984	XM_341274.2	LOC360999	XP_341275.2	ILMN_1362277	0006550487	S	394	CTGGGATCAAAATTCTCCAATGACAAAACAGTAAAAGAAGAACAAAGCGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730466H23 (LOC360999), mRNA.					
Rattus norvegicus	RefSeq	GI_13027415-S	ILMN_298909	CYBB	NM_023965.1	NM_023965.1		66021	13027415	NM_023965.1	Cybb	NP_076455.1	ILMN_1352424	0006590750	S	1534	GGACGGCCCAACTGGGATAACGAGTTCAAGACCATTGCAAGTCAACACCC	X	-	25515804-25515853	Xq13	Rattus norvegicus cytochrome b-245, beta polypeptide (Cybb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 45730] [evidence ISS]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence TAS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	Gp91-phox	Gp91-phox
Rattus norvegicus	RefSeq	GI_62661258-S	ILMN_48042	CDKN3_PREDICTED	XM_214152.4	XM_214152.4		289993	109501528	XM_214152.4	Cdkn3_predicted	XP_214152.2	ILMN_1364508	0006520601	S	570	CACAGCAAGCCATAGACAGCCTTCGAGATGTCAGGGGATCTGGGGCGATA	15	+	22627040-22627089	15p14	PREDICTED: Rattus norvegicus cyclin-dependent kinase inhibitor 3 (predicted) (Cdkn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656609-S	ILMN_58856	RAB11FIP4_PREDICTED	XM_220737.4	XM_220737.4		303337	109488611	XM_220737.4	Rab11fip4_predicted	XP_220737.4	ILMN_1351802	0004670279	S	222	TTGCCGTGGAGTATTCGCCATGAAAGGGTGCGAGGAGCTGCTGAAGGACG	10	+	65806936-65806961:65808296-65808319	10q25	PREDICTED: Rattus norvegicus RAB11 family interacting protein 4 (class II) (predicted) (Rab11fip4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641831	ILMN_281806	LOC684771	XM_001075342.1	XM_001075342.1		684771	109463431	XM_001075342.1	LOC684771	XP_001075342.1	ILMN_1650466	0003140452	S	592	GGCCGCCGATCCTTCTTTGGCTTTGAGAGACCTGAAGACTTGCCTGGAGT					PREDICTED: Rattus norvegicus similar to cell division cycle associated 5, transcript variant 2 (LOC684771), mRNA.					
Rattus norvegicus	RefSeq	GI_62653793-S	ILMN_269904	FEM1B_PREDICTED	XM_001074110.1	XM_001074110.1		315745	109484824	XM_001074110.1	Fem1b_predicted	XP_001074110.1	ILMN_1357677	0002350196	S	2435	CCCGAGCAGTTCGGGCTAATGACATTAACTACCAAGACCAGATCCCCCGG				8q24	PREDICTED: Rattus norvegicus feminization 1 homolog b (C. elegans) (predicted) (Fem1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653097-S	ILMN_56953	LOC503170	XM_580262.1	XM_580262.1		503170	62653097	XM_580262.1	LOC503170	XP_580262.1	ILMN_1369687	0001980364	S	652	GACCATTTGGAGAAAGAGGTAGGGATAAGGATGCCCTCTGCCCTGCGAGC					PREDICTED: Rattus norvegicus LOC503170 (LOC503170), mRNA.					
Rattus norvegicus	RefSeq	GI_34859712-S	ILMN_281177	RGD1562344_PREDICTED	XM_001065351.1	XM_001065351.1		295337	109467318	XM_001065351.1	RGD1562344_predicted	XP_001065351.1	ILMN_1368024	0000070181	S	577	GAAACCTGGAGGGCTGAAGAAGAGGGTTCTCCCCGGACTGAGCATACTTC				2q34	PREDICTED: Rattus norvegicus similar to Gm566 protein (predicted) (RGD1562344_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638708-S	ILMN_62836	RGD1559699_PREDICTED	XM_344831.3	XM_344831.3		365132	109457851	XM_344831.3	RGD1559699_predicted	XP_344832.3	ILMN_1370098	0004150086	S	1967	AGCTGTGTTGCTGCATGCCAAGGAAAAAGAAACCTCGCCTGGGGCAGAAC	1	-	51234359-51234408	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1559699_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453369-S	ILMN_290963	ABCB1B	NM_012623.2	NM_012623.2		24646	25453369	NM_012623.2	Abcb1b	NP_036755.2	ILMN_1368948	0004120332	S	3833	GATGGTTCAGGCTGGAGCAAAGCGCTCATGAGCTGGGAGTATTTGAGGTG	4	+	21912183-21912214:21912215-21912232	4q12	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 1B (Abcb1b), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence IEP]; Establishment of the endothelial barrier between the blood and the brain. The endothelial cells in the brain capillaries are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier [goid 14045] [evidence IMP]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells [goid 15893] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O + xenobiotic(in) = ADP + phosphate + xenobiotic(out) [goid 8559] [evidence IEA]; Enables the directed movement of a drug into, out of, within or between cells. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 15238] [evidence IMP]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Mdr1; Pgy1; Abcb1b; Abcb1	Mdr1; Pgy1; Abcb1b; Abcb1
Rattus norvegicus	RefSeq	GI_16758963-S	ILMN_267469	HOMER3	NM_053310.1	NM_053310.1		29548	16758963	NM_053310.1	Homer3	NP_445762.1	ILMN_1365683	0003440095	S	827	GGAGGCTCGGGTGCAGACCAAGGACCAGGAGATCCAGACTTTGAAGAATC	16	-	19619013-19619035:19619125-19619151	16p14	Rattus norvegicus homer homolog 3 (Drosophila) (Homer3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]	Vesl-3	Vesl-3
Rattus norvegicus	RefSeq	GI_62645253-S	ILMN_288563	LNP_PREDICTED	XM_001061085.1	XM_001061085.1		362151	109470076	XM_001061085.1	Lnp_predicted	XP_001061085.1	ILMN_1357129	0003140427	S	2886	GCATGTGGAACTGGACTTGAATGTCAGCTTTGCACTCTTGGGCAAACTTC				3q23	PREDICTED: Rattus norvegicus limb and neural patterns (predicted) (Lnp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643254-S	ILMN_61864	RGD1565147_PREDICTED	XM_574908.2	XM_574908.2		499583	109464665	XM_574908.2	RGD1565147_predicted	XP_574908.2	ILMN_1362855	0005290148	S	2180	CATCCTTCAAGACCTGGAGAAGAACTTCCTGGTGCAGCGGGTACCACCGG	2	-	109526363-109526412	2q24	PREDICTED: Rattus norvegicus similar to N-acetylated alpha-linked acidic dipeptidase 2 (predicted) (RGD1565147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742744-S	ILMN_292435	NINJ1	NM_012867.1	NM_012867.1		25338	25742744	NM_012867.1	Ninj1	NP_036999.1	ILMN_1354493	0006520156	S	794	AGAAGGACCAGGATATGCCCCTCCCTTTGCTGATACACCAGTGACCCTAC	17	-	21410976-21411025	17p14	Rattus norvegicus ninjurin 1 (Ninj1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27720832-S	ILMN_286847	RGD1560540_PREDICTED	XM_001058807.1	XM_001058807.1		315833	109485018	XM_001058807.1	RGD1560540_predicted	XP_001058807.1	ILMN_1366942	0006100279	S	2017	CTACCTGGTGGGCGGCTGGAACGAGGGCGAGAAGAAGTACAAGAAATGCA				8q31	PREDICTED: Rattus norvegicus similar to hypothetical protein D930047P17 (predicted) (RGD1560540_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978646-S	ILMN_288605	CHGB	NM_012526.1	NM_012526.1		24259	6978646	NM_012526.1	Chgb	NP_036658.1	ILMN_1359665	0001340435	S	2080	CAGCGGGGCTGACAGTCGGAGAGACGAGCCATTCGCTGAAAGACAGCATT	3	+	120584617-120584628:120584629-120584666	3q36	Rattus norvegicus chromogranin B (Chgb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC156676	MGC156676
Rattus norvegicus	RefSeq	GI_62651763-S	ILMN_58309	STNO_PREDICTED	XM_234899.4	XM_234899.4		314619	109480211	XM_234899.4	Stno_predicted	XP_234899.4	ILMN_1354987	0000630551	S	4406	AGCCGTGGGGCTTGGTTGTCCCAGAGAGCTGGTAACTCAGGAAATCGGTG	7	+	11161616-11161665	7q11	PREDICTED: Rattus norvegicus strawberry notch homolog (Drosophila) (predicted) (Stno_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507016-S	ILMN_301745	SCAF1	NM_019384.1	NM_019384.1		56081	9507016	NM_019384.1	Scaf1	NP_062257.1	ILMN_1351179	0001980097	S	3699	ACAGTGGGATGATGGGGAAGGTTGCTGTGAGGAAGAGGAGAGCCCACCCT	1	-	95475696-95475745	1q22	Rattus norvegicus SR-related CTD-associated factor 1 (Scaf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IMP]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]	Sr-a1	Sr-a1
Rattus norvegicus	RefSeq	GI_62650197-S	ILMN_68985	RGD1310271_PREDICTED	XM_233727.4	XM_233727.4		313778	109475920	XM_233727.4	RGD1310271_predicted	XP_233727.4	ILMN_1359683	0000940647	S	1544	TGCCCACAGGCCAAGCCTCACCAAAGCAGGAGAATGGGTCAGGGACCATA	5	-	173082730-173082779	5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC45873 (predicted) (RGD1310271_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650199-S	ILMN_68985	RGD1310271_PREDICTED	XM_233727.4	XM_233727.4		313778	109475920	XM_233727.4	RGD1310271_predicted	XP_233727.4	ILMN_1374747	0004850739	S	845	CTATTCCAGCCAAGGAGTCTGCCCGAAGCCGGTCCCAAAAGGGGAGTCTT	5	-	173083848-173083897	5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC45873 (predicted) (RGD1310271_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665128-S	ILMN_55972	LOC498938	XM_574223.1	XM_574223.1		498938	62665128	XM_574223.1	LOC498938	XP_574223.1	ILMN_1350923	0003290132	S	8319	CAGAAGAAGCCTTTGGCTTCAGTGCAGGCCAGTGGTTCAGGGCTGTGGAG					PREDICTED: Rattus norvegicus similar to Rho-GTPase-activating protein PS-GAP-a (LOC498938), mRNA.					
Rattus norvegicus	RefSeq	GI_62643584-S	ILMN_54700	FSTL5_PREDICTED	XM_345223.3	XM_345223.3		365823	109464957	XM_345223.3	Fstl5_predicted	XP_345224.2	ILMN_1362549	0003130524	S	4182	GGGAGATTGACAGTGAGACAAAGCTGGAACCACTCTCTGTAGCTCAGTGG	2	+	167671148-167671197	2q32	PREDICTED: Rattus norvegicus ollistatin-like 5 (predicted) (Fstl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662780-S	ILMN_61283	LOC502090	XM_577528.1	XM_577528.1		502090	62662780	XM_577528.1	LOC502090	XP_577528.1	ILMN_1357896	0000460154	S	141	GACTTGTCCAGCTTCCCGCAGTGCCCAGATCATGAGTACAAGAGGGCCAC					PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (LOC502090), mRNA.					
Rattus norvegicus	RefSeq	GI_62643171-S	ILMN_267644	LOC499573	XM_574897.1	XM_574897.1		499573	62643171	XM_574897.1	LOC499573	XP_574897.1	ILMN_1349020	0005550411	S	295	ACAGCCCCTATCAAGGGCGTCAGTGAACAGAGGCAGAACCTCACAGCAGC	2	-	94928845-94928894	2q23	PREDICTED: Rattus norvegicus LRRGT00056 (LOC499573), mRNA.					
Rattus norvegicus	RefSeq	GI_62655737-S	ILMN_68732	LOC363547	XM_343863.2	XM_343863.2		363547	62655737	XM_343863.2	LOC363547	XP_343864.2	ILMN_1359272	0000610112	S	450	CTGAGGGAGACCTTGGGGTACCTGAGGGAGACCTTGGAAAGGAGATTGAG					PREDICTED: Rattus norvegicus similar to eukaryotic initiation factor 5A isoform I variant A (LOC363547), mRNA.					
Rattus norvegicus	RefSeq	GI_62652586-S	ILMN_53398	RGD1311993_PREDICTED	XM_235415.4	XM_235415.4		315072	109480861	XM_235415.4	RGD1311993_predicted	XP_235415.4	ILMN_1359011	0001240040	S	3305	AGGCCCTCCGCCATGACACGGACTCCAGGACCAGAAACTTCTACCTGAAC	7	-	112697956-112698005	7q34	PREDICTED: Rattus norvegicus hypothetical LOC315072 (predicted) (RGD1311993_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649692-S	ILMN_271405	PHC2	XM_001059705.1	XM_001059705.1		313038	109477276	XM_001059705.1	Phc2	XP_001059705.1	ILMN_1352632	0005220504	S	3550	GGCTGGAGGCACTGTGGACGAAGCCTTTGGTTTTCCACTCCATACCTGCT				5q36	PREDICTED: Rattus norvegicus polyhomeotic-like 2 (Drosophila) (Phc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664536-S	ILMN_63243	MALT1_PREDICTED	XM_225927.4	XM_225927.4		307366	109506663	XM_225927.4	Malt1_predicted	XP_225927.4	ILMN_1351849	0003840053	S	2384	ATGCCTGATGAGACTTGCCACAGCTCCACATCTACCTCAGCGGGAGCAGG	18	+	61759411-61759460	18q12.1	PREDICTED: Rattus norvegicus mucosa associated lymphoid tissue lymphoma translocation gene 1 (predicted) (Malt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648995-S	ILMN_51816	LOC500461	XM_575824.1	XM_575824.1		500461	62648995	XM_575824.1	LOC500461	XP_575824.1	ILMN_1350961	0006370348	S	701	CACTTGTAAGCTCCAGACACTACTTGGCAGCAGAACACAGCCTCATGTGC					PREDICTED: Rattus norvegicus similar to FSD1-like (LOC500461), mRNA.					
Rattus norvegicus	RefSeq	GI_62660435-S	ILMN_47763	PHOX2B	XM_344239.2	XM_344239.2		364152	62660435	XM_344239.2	Phox2b	XP_344240.2	ILMN_1368599	0004010603	S	1436	CAAGGGATGTGAGCCTGGACTTCGGGGCACTCTCAGGGGGCTGTGTCTGA				14p11	PREDICTED: Rattus norvegicus paired-like homeobox 2b (Phox2b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mature cells of the hindbrain. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21533] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence IEA]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659896-S	ILMN_54209	LOC317051	XM_229754.3	XM_229754.3		317051	62659896	XM_229754.3	LOC317051	XP_229754.3	ILMN_1353998	0001450487	S	2441	TTCAGCGGGCCACAGTCCCAAGGCCAAGTGTGGGAGGCTCAGCGACTTCT				13q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930507C10 (predicted) (LOC317051), mRNA.					
Rattus norvegicus	RefSeq	GI_62663503-S	ILMN_58872	LOC306926	XM_225320.2	XM_225320.2		306926	62663503	XM_225320.2	LOC306926	XP_225320.1	ILMN_1357679	0006380402	S	113	CCGATACACAAAGATACACAAAGAATCTCTTAAGGGGGTCCCCAAGTTCC				17p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC306926), mRNA.					
Rattus norvegicus	RefSeq	GI_52630317-A	ILMN_262544	DMD	NM_001005246.1	NM_001005246.1		24907	52630319	NM_001005246.1	Dmd	NP_001005246.1	ILMN_1376680	0001850093	S	1614	GGAAGCCTTTTCCACATGGCAGATGATTTGGGCAGAGCGATGGAGTCCTT	X	+	71670990-71670990:71670991-71671039	Xq22	Rattus norvegicus dystrophin, muscular dystrophy (Dmd), transcript variant Dp71c, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence IEA]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; A specialized region of connection between a cell and the extracellular matrix [goid 30055] [evidence IEA]; A specialized region of connection between a cell and the extracellular matrix [goid 30055] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix [goid 43034] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide [goid 43043] [evidence ISS]; The chemical reactions and pathways involving neurotransmitter receptors [goid 45213] [evidence IEA]; The chemical reactions and pathways involving neurotransmitter receptors [goid 45213] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence IEA]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	RATDMD; DNADMD1	RATDMD; DNADMD1
Rattus norvegicus	RefSeq	GI_27707657-S	ILMN_297562	RGD1562126_PREDICTED	XM_001059571.1	XM_001059571.1		302511	109511498	XM_001059571.1	RGD1562126_predicted	XP_001059571.1	ILMN_1370538	0005420435	S	411	GAAACTCGCAGCCTCTGACACTTTGGGGACCAGTTATCAGGGTGAGGAGC				Xq12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930403L05 (predicted) (RGD1562126_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645536-S	ILMN_286801	AGPAT7_PREDICTED	XM_001080478.1	XM_001080478.1		296048	109470534	XM_001080478.1	Agpat7_predicted	XP_001080478.1	ILMN_1372370	0006100398	S	1410	ACCTGTTGCTGGGTTCACCACGCCCTGCTGCCATGACTTTGCATGCCGAG				3q34	PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 7 (lysophosphatidic acid acyltransferase, eta) (predicted) (Agpat7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658780-S	ILMN_268516	AUTS2_PREDICTED	XM_001071840.1	XM_001071840.1		304419	109497098	XM_001071840.1	Auts2_predicted	XP_001071840.1	ILMN_1370911	0004120113	S	4355	GTCCATCACCCCGAGCTGTCTCGGCAGGAGGTGTGTACATAGAATGTAAA				12q12	PREDICTED: Rattus norvegicus autism susceptibility candidate 2 (predicted) (Auts2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658778-S	ILMN_268516	AUTS2_PREDICTED	XM_001071840.1	XM_001071840.1		304419	109497098	XM_001071840.1	Auts2_predicted	XP_001071840.1	ILMN_1350844	0000430070	S	244	ATGGACTCCGGAAAAAGCGGAGGTCGCGATCACAGCGAGACCGGGAGAGA				12q12	PREDICTED: Rattus norvegicus autism susceptibility candidate 2 (predicted) (Auts2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342206-S	ILMN_48335	CTSR	NM_175581.2	NM_175581.2		290975	31342206	NM_175581.2	Ctsr	NP_783171.1	ILMN_1369532	0001340102	S	496	GGCAAACGGGCAAACTCATCCCTCTGAGTGTGCAGAACCTCGTGGACTGT				17p14	Rattus norvegicus cathepsin R (Ctsr), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656261-S	ILMN_301497	DHRS7C_PREDICTED	XM_001078936.1	XM_001078936.1		287411	109491035	XM_001078936.1	Dhrs7c_predicted	XP_001078936.1	ILMN_1368597	0000730551	S	1004	CGCTGTTGTGGCCTGTGGAGTGAAGGAGAAGCTCAGTGTCCCAGAAGAGG				10q24	PREDICTED: Rattus norvegicus dehydrogenase/reductase (SDR family) member 7C (predicted) (Dhrs7c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655647-S	ILMN_64378	LOC497860	XM_573041.1	XM_573041.1		497860	62655647	XM_573041.1	LOC497860	XP_573041.1	ILMN_1370994	0005890670	S	367	ATCTGCGCCTGCGTACTTACAACACCCACTTAGCCACGAGGCTTTACCGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930517K11 (LOC497860), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648709-S	ILMN_59987	CPNE3_PREDICTED	XM_232809.3	XM_232809.3		313087	62648709	XM_232809.3	Cpne3_predicted	XP_232809.3	ILMN_1372283	0003190154	S	2501	TGTAACTCTAGCTTCAGGGGGTCTGGTGGTCTCCTCTGCCCTCCACGAGG				5q13	PREDICTED: Rattus norvegicus copine III (predicted) (Cpne3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866296-S	ILMN_57030	LOC312959	XM_232658.2	XM_232658.2		312959	34866296	XM_232658.2	LOC312959	XP_232658.2	ILMN_1349189	0001400471	S	707	GGATCAGTTCTTAAGAGCAGCCCCAACAGACCGAAAAGGTCTTGTTGCAG					PREDICTED: Rattus norvegicus similar to SON DNA-binding protein isoform A (LOC312959), mRNA.					
Rattus norvegicus	RefSeq	GI_62642155-S	ILMN_51424	RANBP6_PREDICTED	XM_219796.3	XM_219796.3		309326	109459997	XM_219796.3	Ranbp6_predicted	XP_219796.1	ILMN_1372533	0000430025	S	3193	TTAGCCTTGAAGATCCCTGTGCCAAACGCCTAGCTAACGTTGTCCGTCAG	1	-	233519772-233519821	1q52	PREDICTED: Rattus norvegicus RAN binding protein 6 (predicted) (Ranbp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56961652-S	ILMN_299586	SERPINA10	NM_133617.2	NM_133617.2		171154	56961652	NM_133617.2	Serpina10	NP_598301.2	ILMN_1354651	0006450047	S	1270	GGTGGATGAAAGGGGAACTGAGGTGGTGTCAGGGACGGTGTCAGAGATCA	6	-	127887962-127888011	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 (Serpina10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Rasp1; MGC108600	Rasp1; MGC108600
Rattus norvegicus	RefSeq	GI_62650445-S	ILMN_277103	LOC500625	NM_001025151.1	NM_001025151.1		500625	68342012	NM_001025151.1	LOC500625	NP_001020322.1	ILMN_1374775	0002230647	S	2537	CTGGACTGAAACTTTTCTTGCTGTCCCTCTTTTTATGCGGTGGCAGGCAG	6	+	28282053-28282067	6q14	Rattus norvegicus hypothetical protein LOC500625 (LOC500625), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657515-S	ILMN_69524	LOC360685	XM_346908.2	XM_346908.2		360685	62657515	XM_346908.2	LOC360685	XP_346909.1	ILMN_1355568	0001570114	S	192	GCACAGTACGCAAGGGCAAAATCACCAGCCACATCCTACCACTACACCCC					PREDICTED: Rattus norvegicus hypothetical LOC360685 (LOC360685), mRNA.					
Rattus norvegicus	RefSeq	GI_62645064	ILMN_302536	RGD1561766_PREDICTED	XR_009374.1	XR_009374.1		366023	109469780	XR_009374.1	RGD1561766_predicted		ILMN_1650445	0002470750	S	347	AGTCCAGGCGTCTCTGGCGGCAAACACCTTCACCATTTCAGGCCAGGACA				3p11	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (predicted) (RGD1561766_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656071-S	ILMN_69794	LOC303140	XM_220427.4	XM_220427.4		303140	109488100	XM_220427.4	LOC303140	XP_220427.4	ILMN_1368217	0006020008	S	1551	CAAGCGAATAAGACGAGTGTCAGCCATGAGTAAGAAAGGGTCTGCACCAG	10	-	39408827-39408871:39409201-39409205	10q22	PREDICTED: Rattus norvegicus up-regulator of carnitine transporter, OCTN2 (LOC303140), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.24621	ILMN_161273	RN.24621	Rn.24621		Rn.24621		13893528	BG671429			ILMN_1530150	0002510008	S	430	ATACAGTTTTATTCTGTTACCTTGGAGTGTAAGTAATTTGATTTAGATGG					DRNBRC10 Rat DRG Library Rattus norvegicus cDNA clone DRNBRC10 5', mRNA					
Rattus norvegicus	RefSeq	GI_57527002-S	ILMN_292631	ZNF622	NM_001009652.1	NM_001009652.1		294846	57527002	NM_001009652.1	Znf622	NP_001009652.1	ILMN_1348951	0002120332	S	1315	GTTGCTAGAAATCAAAAGGCTGTGGGCAGGGTCCTCCAGCAGTACCGAGC	2	+	77584485-77584534	2q22	Rattus norvegicus zinc finger protein 622 (Znf622), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108936; Znf622	MGC108936; Znf622
Rattus norvegicus	RefSeq	GI_62664805-S	ILMN_264664	CSNK2A2_PREDICTED	XM_001061000.1	XM_001061000.1		307641	109508405	XM_001061000.1	Csnk2a2_predicted	XP_001061000.1	ILMN_1349155	0003170400	S	1633	AGCAAACTGCCATTGCTCTCGCCATGTCCTCTTTGGTGTCAGAAGATGGC				19p13	PREDICTED: Rattus norvegicus casein kinase II, alpha 2, polypeptide (predicted) (Csnk2a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644196-S	ILMN_64080	RGD1560967_PREDICTED	XM_575015.2	XM_575015.2		362021	109465452	XM_575015.2	RGD1560967_predicted	XP_575015.2	ILMN_1374586	0005050136	S	2677	GGGACTGAAAGGTGCTTCTTCAACCTACCCGACCTTGAGACTCTGCTTGG	2	-	204279059-204279108	2q34	PREDICTED: Rattus norvegicus similar to Pins (predicted) (RGD1560967_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758915-S	ILMN_300163	ZBTB7A	NM_054002.1	NM_054002.1		117107	16758915	NM_054002.1	Zbtb7a	NP_446454.1	ILMN_1370613	0004850390	S	2644	CGGCAGCAGTTGTGGGTGGACGTAGCCAAGATCAGAGGTAACCCCAGGAA	7	-	10047709-10047758	7q11	Rattus norvegicus zinc finger and BTB domain containing 7a (Zbtb7a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of osteoclast differentiation [goid 45670] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence ISS]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Lrf; OCZF; Zbtb7	Lrf; OCZF; Zbtb7
Rattus norvegicus	RefSeq	GI_23463290-S	ILMN_302277	FFAR1	NM_153304.1	NM_153304.1		266607	23463290	NM_153304.1	Ffar1	NP_695216.1	ILMN_1372381	0002570273	S	751	AAACCCGGACTTAGAAGGCTCCTGGAGGAAGTTGGGGCTCATCACAGGAG	1	-	85917730-85917779	1q21	Rattus norvegicus free fatty acid receptor 1 (Ffar1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Gpr40	Gpr40
Rattus norvegicus	RefSeq	GI_62648189-S	ILMN_268761	LOC683249	XM_001065095.1	XM_001065095.1		683249	109474259	XM_001065095.1	LOC683249	XP_001065095.1	ILMN_1359187	0005050673	S	111	CATCAAGCACGGGAACACATTCCAGATTCATGGGGTCAGCTTGCAGCAGC					PREDICTED: Rattus norvegicus similar to poly (ADP-ribose) polymerase family, member 11 (LOC683249), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717944-S	ILMN_57024	LOC501260	XM_580180.1	XM_580180.1		501260	62717944	XM_580180.1	LOC501260	XP_580180.1	ILMN_1349621	0003170348	S	19	CCACTGTGTCAGAGGACACGTATCTGGAAAAGGCACCCTCAAAACTGGTC					PREDICTED: Rattus norvegicus LOC501260 (LOC501260), mRNA.					
Rattus norvegicus	RefSeq	GI_62339285-S	ILMN_276751	PCDHB15_PREDICTED	XM_001055818.1	XM_001055818.1		291646	109506485	XM_001055818.1	Pcdhb15_predicted	XP_001055818.1	ILMN_1365383	0003870546	S	2402	CAGCGGTGCAGGAACCCTGTCCCACAACTACCAGTATGAGGTGTCTCTTA	18	+	30287688-30287737	18p11	PREDICTED: Rattus norvegicus protocadherin beta 15 (predicted) (Pcdhb15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21070947	ILMN_275711	GNG8	NM_139185.1	NM_139185.1		245986	21070947	NM_139185.1	Gng8	NP_631924.1	ILMN_1650457	0006380338	S	500	GCCTGCCATTTAGGGGAAAATGAGGCACGGGGCAAAAACGTGGGGGCCAC	1	+	77223262-77223311	1q21	Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 8 (Gng8), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56961623-S	ILMN_298275	AP2S1	NM_022952.2	NM_022952.2		65046	56961623	NM_022952.2	Ap2s1	NP_075241.2	ILMN_1351091	0004850333	S	701	AACTGTGCCATTATTGTGTGATGCTGTGAGTGTGCGTGTGTGCAGCCCCC	1	+	77081119-77081168	1q21	Rattus norvegicus adaptor-related protein complex 2, sigma 1 subunit (Ap2s1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; An AP-type membrane coat adaptor complex that consists of beta1, gamma1, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network [goid 30121] [evidence TAS]; An AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles [goid 30122] [evidence TAS]; An AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles [goid 30122] [evidence IDA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	Ap17	Ap17
Rattus norvegicus	RefSeq	GI_62651029-S	ILMN_66697	RGD1563913_PREDICTED	XM_580106.2	XM_580106.2		500691	109478482	XM_580106.2	RGD1563913_predicted	XP_580106.2	ILMN_1363383	0000580348	S	501	AGCCCGCCACTAGAGAGGCTGACCCGAAGCCCTATTCAACCCATACAGGA	6	-	107137247-107137296	6q24	PREDICTED: Rattus norvegicus RGD1563913 (predicted) (RGD1563913_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644741-S	ILMN_284730	EDF1_PREDICTED	XM_001077770.1	XM_001077770.1		296570	109469564	XM_001077770.1	Edf1_predicted	XP_001077770.1	ILMN_1358198	0001980520	S	223	CAGCGACGAGGAGAAGATGTGGAGACATCCAAAAAATGGGCTGCTGGCCA				3p13	PREDICTED: Rattus norvegicus endothelial differentiation-related factor 1 (predicted) (Edf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718697-S	ILMN_54623	LOC501451	XM_576862.1	XM_576862.1		501451	62718697	XM_576862.1	LOC501451	XP_576862.1	ILMN_1373277	0004060672	S	80	GGAAGAGGGAAGAGATGGTCAGAGTGTAGTGGGGAGAGGTGAGGGTTCTG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC501451), mRNA.					
Rattus norvegicus	RefSeq	GI_62664635-S	ILMN_52056	LOC361349	XM_346964.2	XM_346964.2		361349	62664635	XM_346964.2	LOC361349	XP_346965.1	ILMN_1374444	0006650292	S	1778	TCGAGCCCCGGGTGTGCTTCTGCGACTGCCTTCTAGCCAAAGTGAAGCTT					PREDICTED: Rattus norvegicus hypothetical LOC361349 (LOC361349), mRNA.					
Rattus norvegicus	RefSeq	GI_62651672-S	ILMN_301786	RGD1561463_PREDICTED	XR_009002.1	XR_009002.1		366822	109481502	XR_009002.1	RGD1561463_predicted		ILMN_1367926	0000360594	S	643	GGGCTGGTTCTATAACAGGATCCAGGTATTTCCAATCCCGTCCAAGGTCG				7q11	PREDICTED: Rattus norvegicus similar to Sfrs7 protein (predicted) (RGD1561463_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948397-S	ILMN_277688	TMEM66	NM_001004213.1	NM_001004213.1		290796	51948397	NM_001004213.1	Tmem66	NP_001004213.1	ILMN_1355217	0002470746	S	1373	CTAAGAATGGAGCACCCTCCTCCTGAGACTGAGCCCAGACAGCCTAAGCT	16	-	61744979-61745028	16q12.2	Rattus norvegicus transmembrane protein 66 (Tmem66), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93866	MGC93866
Rattus norvegicus	RefSeq	GI_62653222-S	ILMN_64898	LOC300350	XM_235808.3	XM_235808.3		300350	62653222	XM_235808.3	LOC300350	XP_235808.3	ILMN_1369452	0006130301	S	1259	GCTAGCAGTTGCAGAATCCTAGATACCAAACCCAATCCTGCATACCCCAA					PREDICTED: Rattus norvegicus similar to Rho-GTPase-activating protein 26 (Oligophrenin-1 like protein) (GTPase regulator associated with focal adhesion kinase) (LOC300350), mRNA.					
Rattus norvegicus	RefSeq	GI_16757979-S	ILMN_262689	ORM1	NM_053288.1	NM_053288.1		24614	16757979	NM_053288.1	Orm1	NP_445740.1	ILMN_1374464	0006770484	S	416	GGACCTTCATGCTTGCCTTTAACCTGACAGATGAGAACCGGGGGCTGTCC	5	+	80326564-80326613	5q24	Rattus norvegicus orosomucoid 1 (Orm1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	AGP; Agpa1; Orm; orosomucoid	AGP; Agpa1; Orm; orosomucoid
Rattus norvegicus	RefSeq	GI_57164020-S	ILMN_55110	TACSTD2	NM_001009540.2	NM_001009540.2		494343	82617595	NM_001009540.2	Tacstd2	NP_001009540.2	ILMN_1370329	0004850358	S	1441	CCTCTGCCATCGTTCATATGGAATAAAAGGCGTGTCCGACGTCTGCAGTC	4	-	97803361-97803410	4q31	Rattus norvegicus tumor-associated calcium signal transducer 2 (Tacstd2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Prp1; MGC72570	Prp1; MGC72570
Rattus norvegicus	RefSeq	GI_62651513-S	ILMN_67758	LOC503078	XM_578598.1	XM_578598.1		503078	62651513	XM_578598.1	LOC503078	XP_578598.1	ILMN_1349846	0003840136	S	107	CCTGTCTCTCACCTGCACTGTCGCTGGGGACACCTCCAAGAGCCAAGTTT					PREDICTED: Rattus norvegicus similar to immunogloblin heavy chain variable region (LOC503078), mRNA.					
Rattus norvegicus	RefSeq	GI_62664323	ILMN_298574	SH3RF2	NM_001034187.1	NM_001034187.1		307472	77736551	NM_001034187.1	Sh3rf2	NP_001029359.1	ILMN_1651011	0002190279	S	2011	GCCGCCTGCGTCTGCACCACCCTCCATCCTCGTGAAACCAGAAAATTCAA	18	+	35340996-35341045	18p11	Rattus norvegicus SH3 domain containing ring finger 2 (Sh3rf2), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114566	MGC114566
Rattus norvegicus	RefSeq	GI_62655051-S	ILMN_270377	LOC316395	XM_001062004.1	XM_001062004.1		316395	109487088	XM_001062004.1	LOC316395	XP_001062004.1	ILMN_1362350	0000730672	S	6346	CGAGGTGGGGAAAACCATTGGCTTAACATTTAGTTTTCCAGCCTGAGGGG				9q31	PREDICTED: Rattus norvegicus similar to HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 isoform 1 (LOC316395), mRNA.					
Rattus norvegicus	RefSeq	GI_18376836-S	ILMN_267616	AS3MT	NM_080890.1	NM_080890.1		140925	18376836	NM_080890.1	As3mt	NP_543166.1	ILMN_1349101	0006940373	S	1171	CACCGAGCATGAGGGGGTGGCTAAAGGGCAGTCACAAAGTCTTCTGAGCC	1	+	252060915-252060964	1q54	Rattus norvegicus arsenic (+3 oxidation state) methyltransferase (As3mt), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 9404] [evidence IDA]; The chemical reactions and pathways involving arsonoacetate, a synthetic, organic compound containing a single arsenic atom. Arsonoacetate and other arsenic containing compounds are used in agricultural applications as animal feed additives, cotton defoliants and post-emergence grass herbicides [goid 18872] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group (CH3-) to a protein [goid 8276] [evidence TAS]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence TAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + arsenite = S-adenosyl-L-homocysteine + methylarsonate [goid 30791] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + methylarsonite = S-adenosyl-L-homocysteine + dimethylarsinate [goid 30792] [evidence IDA]	Cyt19	Cyt19
Rattus norvegicus	RefSeq	GI_34879253-S	ILMN_61279	LOC289781	XM_223612.2	XM_223612.2		289781	34879253	XM_223612.2	LOC289781	XP_223612.2	ILMN_1375103	0000460435	S	11	GAAGAATGAGCGCATTGTGTCCAATGCCGTTTCTCCCTTAGCACATGCCG				14q21	PREDICTED: Rattus norvegicus similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) (LOC289781), mRNA.					
Rattus norvegicus	RefSeq	GI_62655712-S	ILMN_283315	LOC687579	XM_001079231.1	XM_001079231.1		687579	109489723	XM_001079231.1	LOC687579	XP_001079231.1	ILMN_1363259	0002450369	S	561	AGCCCAGGAAGACAGAGAGAAAGGGCAGACGCCCAAAACGTGACTGCTGG					PREDICTED: Rattus norvegicus similar to mitochondria-associated granulocyte macrophage CSF signaling molecule (LOC687579), mRNA.					
Rattus norvegicus	RefSeq	GI_62655844-S	ILMN_293786	RGD1304924_PREDICTED	XM_001058896.1	XM_001058896.1		302982	109490350	XM_001058896.1	RGD1304924_predicted	XP_001058896.1	ILMN_1371257	0003390138	S	1124	CTTGACCGCACCTTGGGTCGCCTCCTGCCCATCAATACAACAAGACAGGC				10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31364 (predicted) (RGD1304924_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758931-S	ILMN_299281	NEU3	NM_054010.1	NM_054010.1		117185	16758931	NM_054010.1	Neu3	NP_446462.1	ILMN_1360276	0004540725	S	1667	CTGTGCTGTAGTTGTGGCTCTGCTGTTGGCTTGCTTCAGGACTCTGGATG	1	-	157172603-157172652	1q32	Rattus norvegicus sialidase 3 (membrane sialidase) (Neu3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates [goid 4308] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641322-S	ILMN_278917	ZFP688_PREDICTED	XM_001078412.1	XM_001078412.1		293511	109462897	XM_001078412.1	Zfp688_predicted	XP_001078412.1	ILMN_1371632	0006520010	S	760	GTCCGAGGAGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACAT				1q36	PREDICTED: Rattus norvegicus zinc finger protein 688 (predicted) (Zfp688_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655754-S	ILMN_287332	CLDN6_PREDICTED	XM_001055688.1	XM_001055688.1		287098	109490260	XM_001055688.1	Cldn6_predicted	XP_001055688.1	ILMN_1366985	0000870433	S	466	ACTTCTACAACCCCTTGGTCGCAGACGCTCAAAAGCGAGAGCTAGGGGCC				10q12	PREDICTED: Rattus norvegicus claudin 6 (predicted) (Cldn6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576090-S	ILMN_302565	OLR1407	NM_001000005.1	NM_001000005.1		287262	47576090	NM_001000005.1	Olr1407	NP_001000005.1	ILMN_1370789	0004590193	S	586	GACCTGATGGTCTTCACCATTGGTGGACTGGTATTTCTGACTCCATTTAC	10	+	36577972-36578021	10q22	Rattus norvegicus olfactory receptor 1407 (Olr1407), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1407	Olr1407
Rattus norvegicus	RefSeq	GI_62663349-S	ILMN_285454	LOC679020	XM_001054275.1	XM_001054275.1		679020	109505506	XM_001054275.1	LOC679020	XP_001054275.1	ILMN_1358920	0002350494	S	590	CCGTCATCCCCAAGGTCGTGGTCATCAAGCAGAATGGAGCCGTCATCACC					PREDICTED: Rattus norvegicus similar to nucleoredoxin (LOC679020), mRNA.					
Rattus norvegicus	RefSeq	GI_62666997-S	ILMN_295855	RGD1565939_PREDICTED	XM_001063149.1	XM_001063149.1		302446	109511915	XM_001063149.1	RGD1565939_predicted	XP_001063149.1	ILMN_1351097	0000840195	S	204	GCCACCAATCAGGAGTCTGATTGAGAGGTCAAAGTGTGGACCCTGTACCC				Xq22	PREDICTED: Rattus norvegicus similar to Expressed sequence AW011752 (predicted) (RGD1565939_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577790-S	ILMN_287799	OLR1234	NM_001000446.1	NM_001000446.1		300558	47577790	NM_001000446.1	Olr1234	NP_001000446.1	ILMN_1375005	0006040075	S	575	GTACTAGCACCTATGTCAACGAGCTTGTGAGCTCTGCTGTGGTTGGAGCA	8	+	40545017-40545066	8q22	Rattus norvegicus olfactory receptor 1234 (Olr1234), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1234; ratchr8-40553209-40554150_ORF	Olr1234; ratchr8-40553209-40554150_ORF
Rattus norvegicus	RefSeq	GI_13929135-S	ILMN_262666	DEAF1	NM_031801.1	NM_031801.1		83632	13929135	NM_031801.1	Deaf1	NP_113989.1	ILMN_1349190	0003780035	S	1908	CAGACTGTGCCCTTGGAAACAAACTCCTGCCAGAGACCAAGGAACGCTGG	1	-	201491253-201491302	1q41	Rattus norvegicus deformed epidermal autoregulatory factor 1 (Drosophila) (Deaf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_48675851-S	ILMN_281208	UBQLN1	NM_053747.2	NM_053747.2		114590	48675851	NM_053747.2	Ubqln1	NP_446199.2	ILMN_1351250	0001780102	S	2075	GTCTTTGGAACAGTGGGAATCGATGTCTCTGGTTAAGGCCGCTGCATGCG	17	+	12418791-12418840	17p14	Rattus norvegicus ubiquilin 1 (Ubqln1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence ISS]; Any process that modulates the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31396] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Da41	Da41
Rattus norvegicus	RefSeq	GI_62639404-S	ILMN_53454	CEBPG	XM_341842.3	XM_341842.3		25301	109458572	XM_341842.3	Cebpg	XP_341843.3	ILMN_1370451	0002690138	S	737	TGCAGAGAGTAAACCAGCTCAAGGAGGAGAACGAGCGGCTGGAAGCCAAA	1	-	87553548-87553597	1q21	PREDICTED: Rattus norvegicus CCAAT/enhancer binding protein (C/EBP), gamma (Cebpg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEP]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 16071] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The directed killing of a target cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors [goid 42267] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45078] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA repair [goid 45739] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA repair [goid 45739] [evidence ISS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659583-S	ILMN_274302	DARS2	NM_001034143.1	NM_001034143.1		304919	77627986	NM_001034143.1	Dars2	NP_001029315.1	ILMN_1373237	0000870315	S	1884	GGAGCACCCAGCATCAGAGATGTCATAGCCTTCCCTAAATCCTACCGAGG	13	-	76600245-76600294	13q22	Rattus norvegicus aspartyl-tRNA synthetase 2 (mitochondrial) (Dars2), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6422] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp) [goid 4815] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	RGD1308286; MGC124683	RGD1308286; MGC124683
Rattus norvegicus	RefSeq	GI_37591182	ILMN_268826	SLC10A6	NM_198049.1	NM_198049.1		289459	37591182	NM_198049.1	Slc10a6	NP_932166.1	ILMN_1649959	0006940333	S	921	TCAGGCATACAAGAGGAGGCAGAAGAGTCAATACAGGAGACAGCACCCGG	14	+	7291844-7291893	14p22	Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter family), member 6 (Slc10a6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed, sodium-dependent, movement of organic anions into, out of, within or between cells [goid 43251] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other, in a sodium dependent manner [goid 43250] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62644721	ILMN_68525	LOC499750	XM_575085.1	XM_575085.1		499750	62644721	XM_575085.1	LOC499750	XP_575085.1	ILMN_1650670	0003990048	S	181	AGCTGCTTCTGTGCCCTCGTTGTTGTGGCGCTTGGTGTCTTTCGGGCCAA					PREDICTED: Rattus norvegicus LOC499750 (LOC499750), mRNA.					
Rattus norvegicus	RefSeq	GI_28460695-S	ILMN_269342	EEF1A2L1	NM_033539.1	NM_033539.1		29652	15805030	NM_033539.1	Eef1a2l1	NP_284925.1	ILMN_2039950	0001410475	S	1317	GTGTCATCAAAGCCGTGGACAAGAAGGCTGCAGGAGCTGGCAAAGTCACC	8	-	83463893-83463942	8q31	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 2 like 1 (Eef1a2l1), mRNA.				Eef1a2; SI	Eef1a2; SI
Rattus norvegicus	RefSeq	GI_28460695-S	ILMN_269342	EEF1A2L1	NM_033539.1	NM_033539.1		29652	15805030	NM_033539.1	Eef1a2l1	NP_284925.1	ILMN_2039949	0003370360	S	1297	GAGGCAGACAGTTGCTGTGGGTGTCATCAAAGCCGTGGACAAGAAGGCTG	8	-	83463913-83463962	8q31	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 2 like 1 (Eef1a2l1), mRNA.				Eef1a2; SI	Eef1a2; SI
Rattus norvegicus	RefSeq	GI_62663564-S	ILMN_295242	TTRAP	NM_001034947.1	NM_001034947.1		498749	77917591	NM_001034947.1	Ttrap	NP_001030119.1	ILMN_1359509	0001940605	S	538	CAGGAAGTGATTCCCTCCTACTGTGCCTACCTAAGGAAGAGAGCACGCAC	17	-	47296171-47296220	17p11	Rattus norvegicus Traf and Tnf receptor associated protein (Ttrap), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC124734	MGC124734
Rattus norvegicus	RefSeq	GI_16757981-S	ILMN_284452	REG3B	NM_053289.1	NM_053289.1		24618	16757981	NM_053289.1	Reg3b	NP_445741.1	ILMN_1357508	0004920520	S	593	CCAGACAGCAAACAGCTTTAGTTTGTCCTGAAGCACATCCTGTCAAGGGG	4	+	112358823-112358872	4q34	Rattus norvegicus regenerating islet-derived 3 beta (Reg3b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Pap1	Pap1
Rattus norvegicus	RefSeq	GI_27706069-S	ILMN_271021	RGD1564849_PREDICTED	XM_228314.1	XM_228314.1		294530	27706069	XM_228314.1	RGD1564849_predicted	XP_228314.1	ILMN_1364253	0007100519	S	20	ATGTCAGGACTGTCGGGAAATACAGGACCTGCTATGGTACCTCACTCCGG	20	+	47379481-47379530	20q13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L37a (predicted) (RGD1564849_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19526774-S	ILMN_286230	KIDINS220	NM_053795.1	NM_053795.1		116478	19526774	NM_053795.1	Kidins220	NP_446247.1	ILMN_1358016	0000870524	S	6998	CACTGTCTGTGAAGTCGATGCTGGAGTGCCAAATGCACACGGAGACTAGG				6q16	Rattus norvegicus kinase D-interacting substrate of 220 kDa (Kidins220), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]	Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 19887] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]	ARMS	ARMS
Rattus norvegicus	RefSeq	GI_16758071-S	ILMN_266480	CACNG2	NM_053351.1	NM_053351.1		84347	16758071	NM_053351.1	Cacng2	NP_445803.1	ILMN_1372288	0003360402	S	938	GTATCCAGAAGGACAGCAAGGACTCTCTCCACGCCAACACAGCCAACCGC	7	-	115913572-115913621	7q34	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 2 (Cacng2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence IEA]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; The process in which membrane potential changes in the hyperpolarizing direction from the resting potential, usually from negative to more negative [goid 60081] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence TAS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS];  [goid 5246] [evidence NAS]	Ipr328	Ipr328
Rattus norvegicus	RefSeq	GI_47576418-S	ILMN_267236	OLR1579	NM_001000078.1	NM_001000078.1		289239	47576418	NM_001000078.1	Olr1579	NP_001000078.1	ILMN_1361314	0003290433	S	755	GCTGTGCCTCCACTGTATACTTCAAGCCCAAGTCAGAGAACACCAAGGAC	13	-	89335157-89335206	13q24	Rattus norvegicus olfactory receptor 1579 (Olr1579), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1579	Olr1579
Rattus norvegicus	RefSeq	GI_62651663	ILMN_53137	BLOC1S1_PREDICTED	XM_213833.4	XM_213833.4		288785	109480119	XM_213833.4	Bloc1s1_predicted	XP_213833.1	ILMN_1651137	0002100463	S	350	ACTTCAACCAGGCACTTAAGGAAATCGGGGATGTGGAGAACTGGGCTCGG	7	-	2218281-2218311:2218787-2218805	7q11	PREDICTED: Rattus norvegicus biogenesis of lysosome-related organelles complex-1, subunit 1 (predicted) (Bloc1s1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661362-S	ILMN_264895	RNASE1L1	NM_001013232.1	NM_001013232.1		364303	61557375	NM_001013232.1	Rnase1l1	NP_001013250.1	ILMN_1356826	0001190470	S	72	GGGTAGGAAACCTTCAGTCCAGGATTTTAAGAGGCAGCACATGGATCCGG	15	-	27099947-27099996	15p14	Rattus norvegicus ribonuclease, RNase A family, 1-like 1 (pancreatic) (Rnase1l1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RNase 1	RNase 1
Rattus norvegicus	RefSeq	GI_62664723	ILMN_57709	LOC498894	XM_574181.1	XM_574181.1		498894	62664723	XM_574181.1	LOC498894	XP_574181.1	ILMN_1650367	0002760168	S	83	ATGTTTGTGCCTGTCCTGGGAGAGACCATGGGTTAAGAGGGGAGCTGCGG				18q13	PREDICTED: Rattus norvegicus similar to H2A histone family, member V isoform 1 (LOC498894), mRNA.					
Rattus norvegicus	RefSeq	GI_23463262-S	ILMN_288961	NPW	NM_153294.1	NM_153294.1		259224	23463262	NM_153294.1	Npw	NP_695206.1	ILMN_1358725	0006900687	S	629	AGAACCGATGGCGCCCCCGTGCTTGACCTAAGCAGGAGCACAGCTTGTAG	10	-	13908155-13908179:13908180-13908204	10q12	Rattus norvegicus neuropeptide W (Npw), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.11689	ILMN_290536	PHYHIP	NM_001017376.1	NM_001017376.1		290356	62821760	NM_001017376.1	Phyhip	NP_001017376.1	ILMN_1530414	0001090047	S	402	CATTATTTCATTGACCTGAACAAGAAGGAAAATAAGAATTCCAACAAGTT	15	+	50864710-50864759	15p11	Rattus norvegicus phytanoyl-CoA hydroxylase interacting protein (Phyhip), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661974	ILMN_290536	PHYHIP	NM_001017376.1	NM_001017376.1		290356	62821760	NM_001017376.1	Phyhip	NP_001017376.1	ILMN_1650571	0005220095	S	927	CAGCGCCTCTTCAACCCCAGCACCAACCTCTACTTTGCGGACTTCTACTG	15	+	50869903-50869952	15p11	Rattus norvegicus phytanoyl-CoA hydroxylase interacting protein (Phyhip), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662156-S	ILMN_284490	RGD1309388_PREDICTED	XR_007603.1	XR_007603.1		290537	109503697	XR_007603.1	RGD1309388_predicted		ILMN_1374928	0000130022	S	5344	CTCTGCCAAGTCAAAGGCAGCAAGGAGAGACCACTGTCTACACTGAACTG					PREDICTED: Rattus norvegicus similar to DIP13 alpha (predicted) (RGD1309388_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578090-S	ILMN_285547	OLR597	NM_001000331.1	NM_001000331.1		295827	47578090	NM_001000331.1	Olr597	NP_001000331.1	ILMN_1367129	0006450195	S	684	CCGTTCTGCTGAGGGGAGGTTCAAAGCTTTTTCTACTTGCACCTCCCACT	3	+	71675273-71675322	3q24	Rattus norvegicus olfactory receptor 597 (Olr597), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-71570962-71571894_ORF; Olr597	ratchr3-71570962-71571894_ORF; Olr597
Rattus norvegicus	RefSeq	GI_29126231-S	ILMN_287352	SLCO3A1	NM_177481.1	NM_177481.1		140915	29126231	NM_177481.1	Slco3a1	NP_803434.1	ILMN_1362594	0000610538	S	1952	ACTATAAACGCTACATCAAAAACCACGAGGGCGGGCTGAGCACCAGTGAG				1q31	Rattus norvegicus solute carrier organic anion transporter family, member 3a1 (Slco3a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of prostaglandins into, out of, within or between cells [goid 15732] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Slc21a11	Slc21a11
Rattus norvegicus	RefSeq	GI_9507026-S	ILMN_293886	RALGDS	XM_001079127.1	XM_001079127.1		29622	109469674	XM_001079127.1	Ralgds	XP_001079127.1	ILMN_1359002	0003170438	S	3061	CAAGACTACATGCAATGGGAGGTTTGTGGGGAGGGGGAAGACGACTGGAT				3p12	PREDICTED: Rattus norvegicus ral guanine nucleotide dissociation stimulator (Ralgds), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 16220] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62650377-S	ILMN_269554	RGD1305264_PREDICTED	XM_001065384.1	XM_001065384.1		298782	109478989	XM_001065384.1	RGD1305264_predicted	XP_001065384.1	ILMN_1367385	0002370601	S	2380	CCAGTATCTCTCAAAGGCGTACAAGTGCGACACACAGTCCGGTTGTTGGG				6q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20272 (predicted) (RGD1305264_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650427-S	ILMN_59204	LOC500621	XM_343032.2	XM_343032.2		500621	62650427	XM_343032.2	LOC500621	XP_343033.2	ILMN_1363878	0003360692	S	0	GAGAAGAGCTTTCGTCCTCTTCTGCTCAAGATGGTGGCGTCCCGGGCAAT				6q14	PREDICTED: Rattus norvegicus similar to hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit (LOC500621), mRNA.					
Rattus norvegicus	RefSeq	GI_19705486-S	ILMN_296952	UST4R	NM_134379.1	NM_134379.1		171397	19705486	NM_134379.1	UST4r	NP_599206.1	ILMN_1350685	0002370113	S	1608	GCCCTGGATCTTCTATGGAGGCTTCGCCATCCTCAGTGGGTTTATTGTGC	1	-	210619920-210619969	1q43	Rattus norvegicus integral membrane transport protein UST4r (UST4r), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	MGC112602	MGC112602
Rattus norvegicus	RefSeq	GI_34861940-S	ILMN_298871	RGD1565190_PREDICTED	XM_344998.1	XM_344998.1		365415	34861940	XM_344998.1	RGD1565190_predicted	XP_344999.1	ILMN_1361682	0004560750	S	35	TGAATGGCCTCTTTGGGAAGTTGTGGTATGATGGTTATGGAGCTGCCCAG	1	-	217138073-217138122	1q43	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1565190_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34853076	ILMN_272305	RGD1564718_PREDICTED	XR_007954.1	XR_007954.1		300928	109465830	XR_007954.1	RGD1564718_predicted		ILMN_1649886	0004850035	S	475	GGGAAGCAAAGGCTGCCCGTCTGTGTTGAGAAGAAAGCTTCTGGCAAGGC				2q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1564718_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652693-S	ILMN_268636	RGD1309798_PREDICTED	XM_001075769.1	XM_001075769.1		300060	109482528	XM_001075769.1	RGD1309798_predicted	XP_001075769.1	ILMN_1366326	0002940279	S	1347	GAGAAGTCAGGAAGCCTGGGGAGCAGAAAATGGGGGAGAGCCAGAGTGAG				7q34	PREDICTED: Rattus norvegicus similar to Apolipoprotein L3 (Apolipoprotein L-III) (ApoL-III) (TNF-inducible protein CG12-1) (CG12_1) (predicted) (RGD1309798_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705530-S	ILMN_62205	SVOP	NM_134404.2	NM_134404.2		171442	72534839	NM_134404.2	Svop	NP_599231.2	ILMN_1365477	0000870504	S	1922	GTGTCTTCACTGTGTTTGGCCTATGTTCATCGAGGGTTGCCCGCCCCAGG	12	+	43624644-43624693	12q16	Rattus norvegicus SV2 related protein (Svop), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556772-S	ILMN_267061	CLK4	NM_001013041.1	NM_001013041.1		287269	61556772	NM_001013041.1	Clk4	NP_001013059.1	ILMN_1371901	0003870706	S	1104	TGGAGCGGATACTCGGGCCCATCCCAGCACACATGATCCAAAAGACAAGG	10	+	36799424-36799472:36800046-36800046	10q22	Rattus norvegicus CDC like kinase 4 (Clk4), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661862-S	ILMN_65186	LOC501984	XM_577413.1	XM_577413.1		501984	62661862	XM_577413.1	LOC501984	XP_577413.1	ILMN_1367287	0000460524	S	1469	CAAGAGGACCGAGCATGAAGGGTTCCACGCCGCTCTCCATAAGAGCAGTA				15p14	PREDICTED: Rattus norvegicus similar to TRAV6-6 (LOC501984), mRNA.					
Rattus norvegicus	RefSeq	GI_6981671-S	ILMN_300920	TPM4	NM_012678.1	NM_012678.1		24852	6981671	NM_012678.1	Tpm4	NP_036810.1	ILMN_1357093	0000430332	S	695	ACTTGCCCAGGCCAAAGAAGAGAACGTGGGCTTGCATCAGACACTGGACC	16	-	18109064-18109113	16p14	Rattus norvegicus tropomyosin 4 (Tpm4), mRNA.	An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm [goid 2102] [evidence ISS]; An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm [goid 2102] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence ISS]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IEA]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647882-S	ILMN_279595	LOC686935	XM_001075403.1	XM_001075403.1		686935	109473929	XM_001075403.1	LOC686935	XP_001075403.1	ILMN_1349139	0006290301	S	378	GGTCATGCTCAAGTCAGCCGTGCTCTTCAGCCACAGGAAGATGCGCTTTC					PREDICTED: Rattus norvegicus similar to CG9996-PA (LOC686935), mRNA.					
Rattus norvegicus	RefSeq	GI_19923702-S	ILMN_277422	CD44	NM_012924.2	NM_012924.2		25406	19923702	NM_012924.2	Cd44	NP_037056.2	ILMN_1352966	0003850722	S	3584	GCATGAGGAGGCATGATGTACAACCCCCAGACCACTCTTTCCATCACCAC	3	-	88023321-88023370	3q31	Rattus norvegicus Cd44 molecule (Cd44), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IDA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a blood vessel to attain its fully functional state [goid 1955] [evidence IEP]; The series of events that restore integrity to damaged tissue during or following an inflammatory response [goid 2246] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence NAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IMP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of neutrophil apoptosis [goid 33031] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus [goid 33189] [evidence IEP]; The binding and fusion of a macrophage to one or more other cells to form a multinucleated cell [goid 34238] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence ISS]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IMP]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]	RHAMM; CD44A; METAA; MGC124941	RHAMM; CD44A; METAA; MGC124941
Rattus norvegicus	RefSeq	GI_62642340-S	ILMN_269767	MORN4	NM_001024975.1	NM_001024975.1		293950	68163377	NM_001024975.1	Morn4	NP_001020146.1	ILMN_1359602	0005900170	S	1304	GGCAGAGGGCAACCCTATCCGGGCATCTGTGAAATGATCTGGAATCGCAC	1	+	248774799-248774848	1q54	Rattus norvegicus MORN repeat containing 4 (Morn4), mRNA.				MGC109365	MGC109365
Rattus norvegicus	RefSeq	GI_26449165-S	ILMN_281686	IMPA2	NM_172224.1	NM_172224.1		282636	26449165	NM_172224.1	Impa2	NP_757378.1	ILMN_1367402	0006550647	S	1148	CCCGGACCTCGGTGCTTAGCTGATCCTCTCTAATCTCGGGTAGCCCCTTT	18	+	63839876-63839925	18q12.1	Rattus norvegicus inositol (myo)-1(or 4)-monophosphatase 2 (Impa2), mRNA.			Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: myo-inositol 1-phosphate + H2O = myo-inositol + phosphate [goid 8934] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with lithium ions (Li+) [goid 31403] [evidence IEA]	MGC93085	MGC93085
Rattus norvegicus	RefSeq	GI_62662245-S	ILMN_57790	RGD1308922_PREDICTED	XM_224702.4	XM_224702.4		306284	109503084	XM_224702.4	RGD1308922_predicted	XP_224702.2	ILMN_1349138	0005340309	S	1033	GTGGCTACCAGCCCATCCCTGGAAGCACCCAAGACTCTGAACATATTTCC	16	-	9824836-9824885	16p16	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0514 (predicted) (RGD1308922_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666850-S	ILMN_52494	LOC501559	XM_576964.1	XM_576964.1		501559	62666850	XM_576964.1	LOC501559	XP_576964.1	ILMN_1357410	0004920632	S	2673	AGAAGCCTAGAGAAGAAGTGCATCCTCTCCATCAGGTCATGGCGAGTGCA				Xq21	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 23 (LOC501559), mRNA.					
Rattus norvegicus	RefSeq	GI_62664511-S	ILMN_272722	LOC682714	XM_001062776.1	XM_001062776.1		682714	109507427	XM_001062776.1	LOC682714	XP_001062776.1	ILMN_1360618	0003780113	S	1124	TCCGAGGAGAGCCCAGGAACTCTGTCCCACACTGAAGATGAAGCCCACTC					PREDICTED: Rattus norvegicus similar to chloride ion pump-associated 55 kDa protein (LOC682714), mRNA.			Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces oxygen [goid 16670] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758101-S	ILMN_270427	SLPI	NM_053372.1	NM_053372.1		84386	16758101	NM_053372.1	Slpi	NP_445824.1	ILMN_1360286	0005570114	S	487	CGGTTCCGGGTTCCGGTGCTCTGGGGTGCCCAAGCTTTGGACATTTGAAT	3	-	155373941-155373990	3q42	Rattus norvegicus secretory leukocyte peptidase inhibitor (Slpi), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34856844	ILMN_283236	RGD1561393_PREDICTED	XM_342232.1	XM_342232.1		361932	34856844	XM_342232.1	RGD1561393_predicted	XP_342233.1	ILMN_1651126	0005390300	S	1980	CTCCAAGTCCTCATTGCATCGCCCCCTTGACCTAGATACACCAACCAGTG	2	-	123427014-123427063	2q25	PREDICTED: Rattus norvegicus similar to CG15133-PA (predicted) (RGD1561393_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718271-S	ILMN_266539	LOC688519	XM_001067241.1	XM_001067241.1		688519	109513244	XM_001067241.1	LOC688519	XP_001067241.1	ILMN_1352740	0001740484	S	1315	GAGACTGTGACTTCTCAGCACAGTGTCTATGCATCTTTAGAAGGCTCTGG	Un|NW_047874.1	+	442244-442293		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC688519), mRNA.					
Rattus norvegicus	RefSeq	GI_62718709-S	ILMN_55364	LOC301934	XM_229431.3	XM_229431.3		301934	62718709	XM_229431.3	LOC301934	XP_229431.3	ILMN_1372745	0000670632	S	583	AGCTTCCTTCACTGTTTCCTCAAGTGAAAGACGCCCATCTCGCAAGTGCC					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC301934), mRNA.					
Rattus norvegicus	RefSeq	GI_62664999-S	ILMN_287206	VMD2L1_PREDICTED	XM_001070841.1	XM_001070841.1		364973	109508597	XM_001070841.1	Vmd2l1_predicted	XP_001070841.1	ILMN_1359750	0003390435	S	1695	GGCCTACAGAAAGCCGACCTGTTCATTTTGACCAACCGTGTCTCCCACTA				19q11	PREDICTED: Rattus norvegicus vitelliform macular dystrophy 2-like protein 1 (predicted) (Vmd2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648948	ILMN_49350	LOC502948	XM_578452.1	XM_578452.1		502948	62648948	XM_578452.1	LOC502948	XP_578452.1	ILMN_1650458	0002940603	S	2	TGACCAACACCATTTTTCGGGTCAATACAGTCACCACCTTGGTGGAGAAC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC502948), mRNA.					
Rattus norvegicus	RefSeq	GI_62641921-S	ILMN_65221	RGD1564018_PREDICTED	XM_345002.3	XM_345002.3		365421	109459946	XM_345002.3	RGD1564018_predicted	XP_345003.1	ILMN_1361036	0000520397	S	478	CGTCAGCAGGAAAAGCTGGATGTCAAACACTTCATTGAGAAGCGCCTACC	1	+	220879733-220879782	1q43	PREDICTED: Rattus norvegicus similar to lysophospholipase I (predicted) (RGD1564018_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079044-S	ILMN_283581	RBM42	NM_001014159.1	NM_001014159.1		361545	62079044	NM_001014159.1	Rbm42	NP_001014181.1	ILMN_1353872	0003450093	S	1330	GCTTCAAAGACCCCAGTGACTATGTGCGTGCCATGCGTGAGATGAATGGG	1	-	85692996-85692998:85693080-85693126	1q21	Rattus norvegicus RNA binding motif protein 42 (Rbm42), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663482-S	ILMN_57617	LOC498739	XM_574017.1	XM_574017.1		498739	62663482	XM_574017.1	LOC498739	XP_574017.1	ILMN_1373351	0006290519	S	1905	TACGGTGGCCCAAGTAATTCGTGTCCCTGTCACACAAGCGCACCAGGTCG					PREDICTED: Rattus norvegicus similar to GDP-mannose 4, 6-dehydratase (LOC498739), mRNA.					
Rattus norvegicus	RefSeq	GI_62667229-S	ILMN_51111	LOC497847	XM_579479.1	XM_579479.1		497847	62667229	XM_579479.1	LOC497847	XP_579479.1	ILMN_1353128	0002340128	S	3041	GTCAGCCTATGCTTAGAAGACATCATGGAGAAGCTCCGCCACGCCTTCCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_023971 (LOC497847), mRNA.					
Rattus norvegicus	RefSeq	GI_62644252-S	ILMN_66678	LOC499698	XM_575026.1	XM_575026.1		499698	62644252	XM_575026.1	LOC499698	XP_575026.1	ILMN_1356118	0006370204	S	1850	AGCAAACTTGAGCCTCGGAACCACAGGGGAGGGCACAGGAGTGGCAGGAC					PREDICTED: Rattus norvegicus similar to LRRGT00171 (LOC499698), mRNA.					
Rattus norvegicus	RefSeq	GI_62644981-S	ILMN_58742	PHF19_PREDICTED	XM_231165.4	XM_231165.4		296653	109468073	XM_231165.4	Phf19_predicted	XP_231165.4	ILMN_1350776	0005690088	S	808	GGCCCTGAGCAGCAGGATGAAGGCATCGACAGCCACACGTTCGAAAGCAT	3	-	13905571-13905620	3p11	PREDICTED: Rattus norvegicus PHD finger protein 19 (predicted) (Phf19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507228-S	ILMN_290845	UCN	NM_019150.1	NM_019150.1		29151	9507228	NM_019150.1	Ucn	NP_062023.1	ILMN_1360395	0000060577	S	415	GTGGGCAAGTGATCGGCCCCGTATGGGGTCCAGAAAGCCTTGACCCTTTC	6	+	25217463-25217465:25217466-25217512	6q14	Rattus norvegicus urocortin (Ucn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; The regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach [goid 30157] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IDA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51966] [evidence IDA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659082-S	ILMN_270400	RGD1310191	XM_001080704.1	XM_001080704.1		360829	109497567	XM_001080704.1	RGD1310191	XP_001080704.1	ILMN_1367796	0006020131	S	3330	GTTCCAACAGTGAGAAAGCAGGTGTCAGAGAAGCAGATGGGCCTTGACTG				12q16	PREDICTED: Rattus norvegicus similar to Ab2-034 (RGD1310191), mRNA.					
Rattus norvegicus	RefSeq	GI_62078658-S	ILMN_271961	TEKT4	NM_001013965.1	NM_001013965.1		302991	62078658	NM_001013965.1	Tekt4	NP_001013987.1	ILMN_1372118	0003390348	S	1374	CCAACAGCCTTTTCATCGACCGCCAGAAGTGTATGACCCACCGCAACCGC	10	+	14726919-14726968	10q12	Rattus norvegicus tektin 4 (Tekt4), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Tektin4; Tek4; RGD1308075	Tektin4; Tek4; RGD1308075
Rattus norvegicus	RefSeq	GI_62718300-S	ILMN_52873	LOC291900	XM_238040.2	XM_238040.2		291900	62718300	XM_238040.2	LOC291900	XP_238040.2	ILMN_1363827	0004570348	S	57	TTCCGCTGGAGCTGTGCAAAGACCAGAGCCACCCGCCTTTTTCTGACAGT					PREDICTED: Rattus norvegicus hypothetical LOC291900 (LOC291900), mRNA.					
Rattus norvegicus	RefSeq	GI_40786464-S	ILMN_292363	YIPF1	NM_199383.1	NM_199383.1		298312	40786464	NM_199383.1	Yipf1	NP_955415.1	ILMN_1374597	0002100148	S	1079	GTTGGGAAGGTGCGGCTCTTCTGGACACAGCATCCACTGTTGGAAAGCAG	5	+	128461038-128461087	5q34	Rattus norvegicus Yip1 domain family, member 1 (Yipf1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]			MGC72975	MGC72975
Rattus norvegicus	RefSeq	GI_62645463	ILMN_265812	RGD1308745_PREDICTED	XM_001071590.1	XM_001071590.1		311252	109470286	XM_001071590.1	RGD1308745_predicted	XP_001071590.1	ILMN_1650243	0004810438	S	2067	GTTCTGTGCCAACAAGGACCCCAGTACCCCTTCTAACATCTGCACTGCTG				3q31	PREDICTED: Rattus norvegicus similar to E430002G05Rik protein (predicted) (RGD1308745_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758083-S	ILMN_301552	CCS	NM_053425.1	NM_053425.1		84485	16758083	NM_053425.1	Ccs	NP_445877.1	ILMN_1349826	0002340133	S	713	CTGGGAAGAGGTTGGCCTGTGGCATCATTGCACGCTCTGCTGGCCTTTTC	1	-	207430184-207430224:207430322-207430330	1q43	Rattus norvegicus copper chaperone for superoxide dismutase (Ccs), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered [goid 51353] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered [goid 51353] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase [goid 16532] [evidence TAS]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605799-S	ILMN_264934	ZNF655	NM_001008362.1	NM_001008362.1		360764	56605799	NM_001008362.1	Znf655	NP_001008363.1	ILMN_1363594	0006760402	S	3851	GCGACCAATAGTCACTTCTGGTGACTGAGGCAGAGGATTTGATTCATCCC	12	-	9670272-9670321	12p11	Rattus norvegicus zinc finger protein 655 (Znf655), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95009; RGD1309158	MGC95009; RGD1309158
Rattus norvegicus	RefSeq	GI_34868808-S	ILMN_286858	MMP25_PREDICTED	XM_001055465.1	XM_001055465.1		302963	109490254	XM_001055465.1	Mmp25_predicted	XP_001055465.1	ILMN_1375170	0002940687	S	1617	AAAGTACTGGCGGTATGACGAAGTGGCCGGGAGCCCAGACCCTGATTACC					PREDICTED: Rattus norvegicus matrix metalloproteinase 25 (predicted) (Mmp25_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652695-S	ILMN_59454	LOC500903	XM_576305.1	XM_576305.1		500903	62652695	XM_576305.1	LOC500903	XP_576305.1	ILMN_1360638	0003940707	S	76	GCTGTGTTGCCTTCCCCCTCACCCACAGGAAGGATTTCCAGTAAGTTGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210421G13 (LOC500903), mRNA.					
Rattus norvegicus	RefSeq	GI_62664680	ILMN_265032	LIPG	NM_001012741.1	NM_001012741.1		291437	60678259	NM_001012741.1	Lipg	NP_001012759.1	ILMN_1651147	0001570239	S	1131	CAACGCAGACTCCCAGAACCTGCCCTTGGAGATCGTGGAGAAGATTGAGC	18	-	71799665-71799682:71800675-71800706	18q12.3	Rattus norvegicus lipase, endothelial (Lipg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 50746] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate [goid 4465] [evidence IEA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	lipase	lipase
Rattus norvegicus	RefSeq	GI_62717807-S	ILMN_49187	LOC363309	XM_343649.3	XM_343649.3		363309	109512867	XM_343649.3	LOC363309	XP_343650.3	ILMN_1353469	0002900377	S	2087	TCCTCATGGATGCTGTGCTCTGGTGACCTGGACTGCCCATACTTTTGCTG	Un|NW_047838.1	-	189687-189736		PREDICTED: Rattus norvegicus similar to tubulin-specific chaperone d (LOC363309), mRNA.					
Rattus norvegicus	RefSeq	GI_62651155-S	ILMN_277270	TC2N	NM_001025152.1	NM_001025152.1		500707	68342016	NM_001025152.1	Tc2n	NP_001020323.1	ILMN_1374410	0003360128	S	1397	CTGCAAATCCTCGAGGCACAATACCTTCCAAGTTCATCAACACCTCTGGC	6	-	125872789-125872801:125894363-125894399	6q32	Rattus norvegicus tandem C2 domains, nuclear (Tc2n), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]			Tac2-N	Tac2-N
Rattus norvegicus	RefSeq	GI_62655920-S	ILMN_62071	RGD1310922_PREDICTED	XM_213260.4	XM_213260.4		287170	109487936	XM_213260.4	RGD1310922_predicted	XP_213260.3	ILMN_1355053	0004730133	S	947	GGGCCTGGACTACAGAATAAATATGTTTGCTTTGTATCTTGTAAAAACCA				10q12	PREDICTED: Rattus norvegicus similar to chromosome 16 open reading frame 33; minus -99 protein (predicted) (RGD1310922_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642650-S	ILMN_54426	ARSK	XM_345131.3	XM_345131.3		365619	109464188	XM_345131.3	Arsk	XP_345132.3	ILMN_1374852	0005860400	S	2264	GCACCCTCCAAAGGGCAACTACAATCACCTTGTGTCCTTTGTGGACAAGC	2	-	3124705-3124754	2q11	PREDICTED: Rattus norvegicus arylsulfatase K (Arsk), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2 [goid 8484] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865999-A	ILMN_295910	CALR3	NM_001012212.1	NM_001012212.1		364529	58865999	NM_001012212.1	Calr3	NP_001012212.1	ILMN_1376657	0002630154	S	1165	GGCAAGGCCACCTGGGGGGAAACTAAGGGTCCAGAAAAGGAGATGGATGC	16	+	17841801-17841827:17842540-17842562	16p14	Rattus norvegicus calreticulin 3 (Calr3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650691-S	ILMN_263309	BAZ1A_PREDICTED	XM_001079067.1	XM_001079067.1		314126	109479392	XM_001079067.1	Baz1a_predicted	XP_001079067.1	ILMN_1367946	0004060731	S	4536	GCTTGGACTGCATGTCTCACCCAGTAATGTGGACCAGGCTAGCACGCCAC				6q23	PREDICTED: Rattus norvegicus bromodomain adjacent to zinc finger domain, 1A (predicted) (Baz1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393692-S	ILMN_270985	RPSA	NM_017138.1	NM_017138.1		29236	8393692	NM_017138.1	Rpsa	NP_058834.1	ILMN_1372467	0005050079	S	950	CTGAGCTCCTCTGCAGGTGCCTGAGCGAAGGGAAAAAAGGTGGAAGGAAA	8	+	125104029-125104031:125104032-125104078	8q32	Rattus norvegicus ribosomal protein SA (Rpsa), mRNA.	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEP]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Combining with a laminin, a glycoprotein that constitutes the majority of proteins in the basement membrane, to initiate a change in cell activity [goid 5055] [evidence TAS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IC ]; Interacting selectively with any part of a ribosome [goid 43022] [evidence ISS]; Interacting selectively with laminins, glycoproteins that are major constituents of the basement membrane of cells [goid 43236] [evidence ISS]	Lamr1	Lamr1
Rattus norvegicus	RefSeq	GI_47777713-S	ILMN_297031	OLR684	NM_001001378.1	NM_001001378.1		295890	47777713	NM_001001378.1	Olr684	NP_001001378.1	ILMN_1374369	0002810433	S	542	CACTACTGGGACTTGCGTGCACTGACACCTTCTTCCTTGGCATCACCGTC	3	+	73509840-73509889	3q24	Rattus norvegicus olfactory receptor 684 (Olr684), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr684	Olr684
Rattus norvegicus	RefSeq	GI_62648502-S	ILMN_280887	RGD1563586_PREDICTED	XR_008001.1	XR_008001.1		500382	109475987	XR_008001.1	RGD1563586_predicted		ILMN_1370134	0006760112	S	292	ACAAGGGTCTCCTTGCTGTTCATTGTATTACACCTGAGGAGGCCAAGTAC				5q11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S4, X isoform (predicted) (RGD1563586_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654075-S	ILMN_62068	RGD1560775_PREDICTED	XM_576442.2	XM_576442.2		501031	109483776	XM_576442.2	RGD1560775_predicted	XP_576442.2	ILMN_1364740	0004760497	S	1104	GCCACCGGAGACCCTGGAGAGGGTGGAGTCGAAAGGATTCAAATTCCGTC	8	-	93934419-93934422:93947552-93947576:93948343-93948363	8q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930579C12 gene (predicted) (RGD1560775_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661872-S	ILMN_65623	LOC364331	XM_344355.2	XM_344355.2		364331	62661872	XM_344355.2	LOC364331	XP_344356.2	ILMN_1353135	0000520278	S	2157	GTGACTCCCTTCGGCAATTTGAGGTGGTACAAACAAGACACAGGCAGAGC				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC364331), mRNA.					
Rattus norvegicus	RefSeq	GI_62647549-S	ILMN_49033	LOC502811	XM_578310.1	XM_578310.1		502811	62647549	XM_578310.1	LOC502811	XP_578310.1	ILMN_1357603	0001230750	S	145	AGGTGTTGGATCGCAGTGTGAAATCTGGAGTTCCTTCAAGGTTCAGTGCC					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa chain (LOC502811), mRNA.					
Rattus norvegicus	RefSeq	GI_11560007-S	ILMN_281439	MMP8	NM_022221.1	NM_022221.1		63849	11560007	NM_022221.1	Mmp8	NP_071557.1	ILMN_1371081	0002100687	S	1100	CCAACTATGGATTCCCAAGGAGTGTCCAAGCCATTGATGCAGCTGTTTCC	8	+	4409672-4409721	8q11	Rattus norvegicus matrix metallopeptidase 8 (Mmp8), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IMP]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IMP]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62649500-S	ILMN_286972	RGD1309582_PREDICTED	XM_001066935.1	XM_001066935.1		313482	109476976	XM_001066935.1	RGD1309582_predicted	XP_001066935.1	ILMN_1359042	0004070440	S	2232	GATGCACTTCACAAGCTTCCGGAGACCCCCACAACCCCAGCGCCCTTTTT				5q35	PREDICTED: Rattus norvegicus hypothetical LOC313482 (predicted) (RGD1309582_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655641-S	ILMN_64109	LOC497858	XM_573039.1	XM_573039.1		497858	62655641	XM_573039.1	LOC497858	XP_573039.1	ILMN_1352672	0006770315	S	676	GGATCATAGAGTCTTCAAACGCCTGGAGAACCAGGACCTGGCACAAAGAC				10q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32871 (LOC497858), mRNA.					
Rattus norvegicus	RefSeq	GI_52421336-S	ILMN_64497	PTBP1	NM_022516.4	NM_022516.4		29497	77416350	NM_022516.4	Ptbp1	NP_071961.1	ILMN_1356425	0000610253	S	2362	GTTTTGTTCTCTGCCCGCCTCTGACTATGCCCAGTTGAGGGGCTGACCTC	7	-	11355830-11355879	7q11	Rattus norvegicus polypyrimidine tract binding protein 1 (Ptbp1), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence TAS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence TAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	Pybp1; Pybp2; Ptb; Pybp	Pybp1; Pybp2; Ptb; Pybp
Rattus norvegicus	RefSeq	GI_19173757-S	ILMN_262971	MTDH	NM_133398.1	NM_133398.1		170910	19173757	NM_133398.1	Mtdh	NP_596889.1	ILMN_1367730	0002900671	S	1906	AGCTCTTCCCAAGTGCCACCGATGTTACAAGACACAGACAAACCCAAGTC	7	+	69582017-69582066	7q22	Rattus norvegicus metadherin (Mtdh), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IPI]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Lyric	Lyric
Rattus norvegicus	RefSeq	GI_62650322-S	ILMN_298926	RGD1565310_PREDICTED	XM_001057346.1	XM_001057346.1		362697	109478861	XM_001057346.1	RGD1565310_predicted	XP_001057346.1	ILMN_1349900	0003990433	S	3024	TCTGTCCCCTGGGGGTGACAAGCCTTACAGCCCTTTAGAGCCTGTGGCTT				6q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110018J12 (predicted) (RGD1565310_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653487-I	ILMN_55466	ATPI	XM_576379.1	XM_576379.1		25392	62653487	XM_576379.1	Atpi	XP_576379.1	ILMN_1375562	0000840593	S	181	CAGATGTGAAAGCCTCGATTCTACAGGACTTTGTCGTGTTGGAAGACGTA				5q36	PREDICTED: Rattus norvegicus ATPase inhibitor (Atpi), mRNA.					
Rattus norvegicus	RefSeq	GI_11693155-S	ILMN_290146	FXYD4	NM_022388.1	NM_022388.1		64190	11693155	NM_022388.1	Fxyd4	NP_071783.1	ILMN_1375044	0001410446	S	1090	TGGCCCTGAGTGGCAAGTGCAAATGTAGGCGCAACCATACGCCCAGTTCC	4	-	154234021-154234025:154234457-154234493:154234568-154234575	4q42	Rattus norvegicus FXYD domain-containing ion transport regulator 4 (Fxyd4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Chif	Chif
Rattus norvegicus	RefSeq	GI_8392880-S	ILMN_47707	AIF1	NM_017196.2	NM_017196.2		29427	78126174	NM_017196.2	Aif1	NP_058892.1	ILMN_1359219	0006590022	S	528	TCTGAGTTGCCCTAATTGGAGGTGGATATAACACGGTGGGACCGAGGACC	20	+	3716198-3716212:3716213-3716247	20p12	Rattus norvegicus allograft inflammatory factor 1 (Aif1), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence ISS]; An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IEA]	A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42116] [evidence NAS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Bart1; mrf-1; iba1	Bart1; mrf-1; iba1
Rattus norvegicus	RefSeq	GI_62657019-S	ILMN_60913	RGD1561080_PREDICTED	XM_340895.3	XM_340895.3		360620	109488949	XM_340895.3	RGD1561080_predicted	XP_340896.2	ILMN_1359176	0005720411	S	1141	GGCCACAGAGACTCCATCACCACTGTCCGCTCCTTCCTGGATGACTTTGA	10	+	87672541-87672580:87675691-87675700	10q31	PREDICTED: Rattus norvegicus similar to Wasp-binding protein (predicted) (RGD1561080_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654077-S	ILMN_62153	LOC501032	XM_576443.1	XM_576443.1		501032	62654077	XM_576443.1	LOC501032	XP_576443.1	ILMN_1349595	0001500204	S	1380	GTAAAGCCCAACATAAGGAGGCAAGCTATACCCGAGAAGAAGCAAGAAAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501032), mRNA.					
Rattus norvegicus	RefSeq	GI_62655693-S	ILMN_282365	UBN1_PREDICTED	XM_001079088.1	XM_001079088.1		302935	109489711	XM_001079088.1	Ubn1_predicted	XP_001079088.1	ILMN_1368675	0006400204	S	5454	CAGGCGTGGCCGTTTCTTAGGTGTGAGAGGGGCTTTTGTGCCGCAACTAT				10q12	PREDICTED: Rattus norvegicus ubinuclein 1 (predicted) (Ubn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649540-S	ILMN_294220	LAO1_PREDICTED	XM_001069751.1	XM_001069751.1		298483	109477060	XM_001069751.1	Lao1_predicted	XP_001069751.1	ILMN_1371960	0001340162	S	1686	CACTGGTCCCTTGGTCTGCAAGCAGGAGCCGTGCTGGGAAAGTGACAAGA				5q36	PREDICTED: Rattus norvegicus L-amino acid oxidase 1 (predicted) (Lao1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648644-S	ILMN_56660	LOC502936	XM_578438.1	XM_578438.1		502936	62648644	XM_578438.1	LOC502936	XP_578438.1	ILMN_1349502	0002510097	S	868	AGGAGTTCCGGGAGGGCTCCTCAGGGCAGCATTTGCCCACTGACGTTAAT					PREDICTED: Rattus norvegicus similar to thioredoxin 2 (LOC502936), mRNA.					
Rattus norvegicus	RefSeq	GI_62655476-S	ILMN_270675	RGD1562136_PREDICTED	XM_001070947.1	XM_001070947.1		501195	109487572	XM_001070947.1	RGD1562136_predicted	XP_001070947.1	ILMN_1372724	0002900039	S	2729	CAGGAGAGGCCGGCTCCCAGCTTACTGCATCAATCCAAGTTTTTGGTGGC				9q36	PREDICTED: Rattus norvegicus similar to D1Ertd622e protein (predicted) (RGD1562136_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717888-S	ILMN_53998	LOC501246	XM_576665.1	XM_576665.1		501246	62717888	XM_576665.1	LOC501246	XP_576665.1	ILMN_1370180	0002510239	S	553	CGCAGGCGCCACATCTGGTCACTATTTGATGCCATTTCAATGTTCTCAGG					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC501246), mRNA.					
Rattus norvegicus	RefSeq	GI_62662016-S	ILMN_50925	CLN5_PREDICTED	XM_224477.3	XM_224477.3		306128	62662016	XM_224477.3	Cln5_predicted	XP_224477.3	ILMN_1372804	0006130121	S	797	CAGCAGTATCTGGGCAAGCACAATAGAGGGGAAAACGGAACAGCTGGTGT				15q22	PREDICTED: Rattus norvegicus ceroid-lipofuscinosis, neuronal 5 (predicted) (Cln5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646342-S	ILMN_272789	RBPSUHL_PREDICTED	XM_001071311.1	XM_001071311.1		362268	109471282	XM_001071311.1	Rbpsuhl_predicted	XP_001071311.1	ILMN_1367419	0000380204	S	1346	ACGCTGGGCTCAAGGTGTGGTTCGGAGATGTGGAGGCAGAAACCATGTAC				3q42	PREDICTED: Rattus norvegicus recombining binding protein suppressor of hairless-like (Drosophila) (predicted) (Rbpsuhl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657462-S	ILMN_66434	LOC287871	XM_213539.3	XM_213539.3		287871	62657462	XM_213539.3	LOC287871	XP_213539.3	ILMN_1361980	0002450097	S	5884	TAAAGCCGTGAGAAGTCGCTGCCCTTGCCAGATGAGAACGGTGGGGTGTG				10q32.3	PREDICTED: Rattus norvegicus similar to p150 target of rapamycin (TOR)-scaffold protein containing WD-repeats (predicted) (LOC287871), mRNA.					
Rattus norvegicus	RefSeq	GI_62653588-S	ILMN_290241	TREH	XM_001062931.1	XM_001062931.1		60576	109484574	XM_001062931.1	Treh	XP_001062931.1	ILMN_1372412	0003610373	S	1644	CTGATGCTTCTGGACCGCTATGGTGACCAGCTGACTTCCGGGACCCAGTT				8q22	PREDICTED: Rattus norvegicus trehalase (brush-border membrane glycoprotein) (Treh), mRNA.		The chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi [goid 5991] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IDA]	Catalysis of the reaction: alpha,alpha-trehalose + H2O = 2 D-glucose [goid 4555] [evidence ISS]; Catalysis of the reaction: alpha,alpha-trehalose + H2O = 2 D-glucose [goid 4555] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27668353-S	ILMN_59816	RGD1306126	XM_213267.2	XM_213267.2		287150	109487915	XM_213267.2	RGD1306126	XP_213267.1	ILMN_1358978	0000110427	S	674	CGTGTGGTGTCTGGACGGTTCCCCTTTCCCACATGGAAGCCTGTAGCCGT	10	-	15057852-15057901	10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC2494 (RGD1306126), mRNA.					
Rattus norvegicus	RefSeq	GI_62648226-S	ILMN_273293	RGD1564770_PREDICTED	XM_001067717.1	XM_001067717.1		500335	109474313	XM_001067717.1	RGD1564770_predicted	XP_001067717.1	ILMN_1350169	0000380242	S	476	GGTTCACTGCCAAAGAGACCTGCAAATTCCACGATGCAACTCTTGCTGTG				4q42	PREDICTED: Rattus norvegicus similar to CD69 antigen (p60, early T-cell activation antigen) (predicted) (RGD1564770_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642897-S	ILMN_66581	LOC361892	XM_347009.2	XM_347009.2		361892	62642897	XM_347009.2	LOC361892	XP_347010.1	ILMN_1353680	0001410504	S	405	CACACAGTGGTCGTGAGGTGTAGACTCCAAAGCTAGTTCATGCGTGTGCC					PREDICTED: Rattus norvegicus hypothetical LOC361892 (LOC361892), mRNA.					
Rattus norvegicus	RefSeq	GI_62646084-S	ILMN_294977	KIF3B_PREDICTED	XM_001061386.1	XM_001061386.1		296284	109471061	XM_001061386.1	Kif3b_predicted	XP_001061386.1	ILMN_1352633	0002470113	S	5143	CAGTTCTGCCTCACTGTGCCTCTTGAGTTTGAGGGGTACTATGGTCATCG				3q41	PREDICTED: Rattus norvegicus kinesin family member 3B (predicted), transcript variant 2 (Kif3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424153-S	ILMN_278490	MMP10	NM_133514.1	NM_133514.1		117061	19424153	NM_133514.1	Mmp10	NP_598198.1	ILMN_1375105	0003610438	S	1607	CCACAGAGCATCACCTGAGCACAGAAGTGAAAGCTTCTCGGTACACTAGG	8	+	4375641-4375690	8q11	Rattus norvegicus matrix metallopeptidase 10 (Mmp10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40786450-S	ILMN_279697	EIF2S2	NM_199380.1	NM_199380.1		296302	40786450	NM_199380.1	Eif2s2	NP_955412.1	ILMN_1367136	0001230309	S	1115	GTGGTGGAGATTTGGCTGGACAGGTTACCATCAGAGTGGATGTACCATTG	3	-	145346666-145346715	3q42	Rattus norvegicus eukaryotic translation initiation factor 2, subunit 2 (beta) (Eif2s2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645951-S	ILMN_60975	RRBP1_PREDICTED	XM_230637.4	XM_230637.4		311483	109468921	XM_230637.4	Rrbp1_predicted	XP_230637.4	ILMN_1364363	0006550332	S	4283	AATTGTCTGTATTTCTCAGTGGGGCCGGGTCGGGAAGCAACAGGCCAGGT	3	-	132388984-132389033	3q41	PREDICTED: Rattus norvegicus ribosome binding protein 1 homolog 180kDa (dog) (predicted) (Rrbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640696-S	ILMN_49995	LOC499174	XM_574469.1	XM_574469.1		499174	62640696	XM_574469.1	LOC499174	XP_574469.1	ILMN_1363051	0005050369	S	2009	GTCGAGCCCTGGTAATGGAGGTCATAGAGAGAATCAATCTCAGTACTGCC				1q22	PREDICTED: Rattus norvegicus similar to LAG1 longevity assurance homolog 3 (LOC499174), mRNA.					
Rattus norvegicus	RefSeq	GI_62666639-S	ILMN_267004	RGD1565862_PREDICTED	XM_001065451.1	XM_001065451.1		302579	109511611	XM_001065451.1	RGD1565862_predicted	XP_001065451.1	ILMN_1358407	0001230500	S	981	CACCACAGATGATGGCTCCAAGAGGGTTGGGATGGTAATCCACCAGGTAG				Xq13	PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (predicted) (RGD1565862_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647527-S	ILMN_48101	LOC502799	XM_578298.1	XM_578298.1		502799	62647527	XM_578298.1	LOC502799	XP_578298.1	ILMN_1366700	0004780592	S	313	TCTACTACTGTCAACAGGCTTCTAGTGCTCCTCCCACAGTGATTCAGGCC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502799), mRNA.					
Rattus norvegicus	RefSeq	GI_62641326-S	ILMN_279564	LOC687796	XM_001078497.1	XM_001078497.1		687796	109462905	XM_001078497.1	LOC687796	XP_001078497.1	ILMN_1367199	0002810403	S	2034	TTGGGACCACCAACCAAGGGGACCAGCGTATCCTGCGTAGTAGTGCTCCT					PREDICTED: Rattus norvegicus hypothetical protein LOC687795, transcript variant 2 (LOC687796), mRNA.					
Rattus norvegicus	RefSeq	GI_62666012-S	ILMN_275776	RGD1560557_PREDICTED	XR_007676.1	XR_007676.1		499437	109510158	XR_007676.1	RGD1560557_predicted		ILMN_1357702	0006660673	S	1415	GCTGTGGCCATGGTCCTGGCTGGTGGAATTCAAAGAACTGATGCTGCAGG				20q11	PREDICTED: Rattus norvegicus similar to minichromosome maintenance protein 8 isoform 1 (predicted) (RGD1560557_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645842-S	ILMN_269533	RGD1310131_PREDICTED	XM_001081124.1	XM_001081124.1		296145	109470798	XM_001081124.1	RGD1310131_predicted	XP_001081124.1	ILMN_1365566	0005080184	S	1642	CGCTCCTTCCAGGCCAGCCATGTGTCCAAGGTCACCATCTTTGTGTCTCG				3q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ37440 (predicted) (RGD1310131_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50428575-S	ILMN_292058	DDAH1	NM_022297.2	NM_022297.2		64157	50428575	NM_022297.2	Ddah1	NP_071633.1	ILMN_1357122	0005900040	S	2350	AGACTGGGCCTCATCTCGTCCCCCTCAGTGGCCGGAAGTGAGAAAATCAA	2	+	244069816-244069830	2q44	Rattus norvegicus dimethylarginine dimethylaminohydrolase 1 (Ddah1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6525] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence IMP]; Any process that activates or increases angiogenesis [goid 45766] [evidence IMP]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline [goid 16403] [evidence TAS]; Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline [goid 16403] [evidence IDA]; Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline [goid 16403] [evidence IEA]; Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline [goid 16403] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654326-S	ILMN_274128	IHPK2	XM_576471.1	XM_576471.1		59268	62654326	XM_576471.1	Ihpk2	XP_576471.1	ILMN_1372551	0007040609	S	1501	TGTCACAGAGATAAGTGAGGAGAGTGGGGAGTGAGCTTGCTGGCTAGTCC	8	+	113861584-113861617:113861618-113861633	8q32	PREDICTED: Rattus norvegicus inositol hexaphosphate kinase 2 (Ihpk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence ISS]	Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence ISS]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078696-S	ILMN_285787	NPL	NM_001013984.1	NM_001013984.1		304860	62078696	NM_001013984.1	Npl	NP_001014006.1	ILMN_1363958	0002470129	S	2164	TTGCCACTACTGTTAATACCTAAAGCCTCACCCCTACCTCTATCCTGGGG	13	-	68524283-68524332	13q21	Rattus norvegicus N-acetylneuraminate pyruvate lyase (Npl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: N-acetylneuraminate = N-acetyl-D-mannosamine + pyruvate [goid 8747] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643127-S	ILMN_55439	LOC361911	XM_347010.2	XM_347010.2		361911	62643127	XM_347010.2	LOC361911	XP_347011.2	ILMN_1365508	0003120390	S	670	GCTGCGAGTGGAGGATAGCTCTGGAGAAGTGGCCGGGTGTAGTGGTTGTT					PREDICTED: Rattus norvegicus hypothetical LOC361911 (LOC361911), mRNA.					
Rattus norvegicus	RefSeq	GI_31377511-S	ILMN_270357	SDC3	NM_053893.2	NM_053893.2		116673	31377511	NM_053893.2	Sdc3	NP_446345.2	ILMN_1354087	0002120647	S	2682	CAACTGGATGGACTCATACTCCAGCAGGCTCATCCCAATGCTGTAGGCCC	5	-	149488084-149488133	5q36	Rattus norvegicus syndecan 3 (Sdc3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27708771-S	ILMN_280494	RGD1560203_PREDICTED	XM_001072248.1	XM_001072248.1		302685	109511755	XM_001072248.1	RGD1560203_predicted	XP_001072248.1	ILMN_1364791	0005550148	S	258	GAAACCAGACCGCAAAAGTTGGCAGGGGGGCTTTCGGGCCATGGAATGCG				Xq21	PREDICTED: Rattus norvegicus similar to ferritin heavy polypeptide-like 17 (predicted) (RGD1560203_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646081-S	ILMN_296675	RGD1310192_PREDICTED	XM_001063019.1	XM_001063019.1		296280	109471081	XM_001063019.1	RGD1310192_predicted	XP_001063019.1	ILMN_1362192	0001690593	S	766	CGAGGTGATAGTGAAGGAGTATGAGTGCAGATCCTCAGGCCGCGTGGTGG				3q41	PREDICTED: Rattus norvegicus similar to bA392M18.1 (novel protein similar to testis specific protein TSPY) (predicted) (RGD1310192_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659611-S	ILMN_281463	LOC498265	NM_001017493.1	NM_001017493.1		498265	62945345	NM_001017493.1	LOC498265	NP_001017493.1	ILMN_1365220	0005360056	S	2698	GCCTGGCTGCTGTCGGAACTGGGGGCACTGCAAGAAAGGATTGAGAAGCT	13	-	79711192-79711241	13q22	Rattus norvegicus similar to hypothetical protein FLJ10706 (LOC498265), mRNA.					
Rattus norvegicus	RefSeq	GI_62666206-S	ILMN_63164	LOC502453	XM_577934.1	XM_577934.1		502453	62666206	XM_577934.1	LOC502453	XP_577934.1	ILMN_1374914	0003840286	S	2766	GTGTGGAGACGCACTCACCAGGCCCTGTACATCTTTAAAGTGCAGGGCAG				20q12	PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502453), mRNA.					
Rattus norvegicus	RefSeq	GI_51948381-S	ILMN_287801	RILPL2	NM_001004205.1	NM_001004205.1		288652	51948381	NM_001004205.1	Rilpl2	NP_001004205.1	ILMN_1360115	0006420128	S	965	TCAGAGCAAAGTCAAAGGAAGATGCTCTCATGGCTCACCTGCTCCCCGGG	12	+	33250225-33250274	12q15	Rattus norvegicus Rab interacting lysosomal protein-like 2 (Rilpl2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653464-S	ILMN_280750	RICS_PREDICTED	XM_001056872.1	XM_001056872.1		315530	109484469	XM_001056872.1	RICS_predicted	XP_001056872.1	ILMN_1374509	0004590717	S	6765	CAGCAAGCGCCAGAGCAGTGTGACTGTCGTGTCCCAGTACGATAACCTGG				8q21	PREDICTED: Rattus norvegicus RhoGAP involved in beta-catenin-N-cadherin and NMDA receptor signaling (predicted) (RICS_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662390-S	ILMN_270256	RGD1565495_PREDICTED	XR_008573.1	XR_008573.1		306336	109503938	XR_008573.1	RGD1565495_predicted		ILMN_1353630	0006840722	S	1000	GCAAAAGATGGGTCTCCAGAGCTCCTGTCTATTCACGGAGGACACACTGC				16p14	PREDICTED: Rattus norvegicus similar to retinoblastoma binding protein 7 (predicted) (RGD1565495_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646282-S	ILMN_53996	LOC502689	XM_578186.1	XM_578186.1		502689	62646282	XM_578186.1	LOC502689	XP_578186.1	ILMN_1374844	0001190725	S	385	GCTGCCTGGTGCAGGAAAGGGCTCAGAATTGGGCAGACACACCAAATACG				3q42	PREDICTED: Rattus norvegicus similar to C20orf118 (LOC502689), mRNA.					
Rattus norvegicus	RefSeq	GI_42476055-S	ILMN_293207	CAPN1	NM_019152.2	NM_019152.2		29153	42476055	NM_019152.2	Capn1	NP_062025.1	ILMN_1373652	0004060095	S	2854	TTATGGAGGACCAGGACCTAGGGGGTGGGTTGGGGAGGTCCCATGTTTCA	1	-	208620316-208620365	1q43	Rattus norvegicus calpain 1 (Capn1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence IC ]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IDA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IDA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638874-S	ILMN_296027	RGD1565210_PREDICTED	XM_001071740.1	XM_001071740.1		499072	109461194	XM_001071740.1	RGD1565210_predicted	XP_001071740.1	ILMN_1362094	0005890619	S	127	TTGGACGTGGCGGGTATGGCGGCGCTGCTGACCGGCGTGTTCGCGCAGCT				1q12	PREDICTED: Rattus norvegicus RGD1565210 (predicted) (RGD1565210_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653444-S	ILMN_53310	LOC363035	XM_343366.2	XM_343366.2		363035	62653444	XM_343366.2	LOC363035	XP_343367.2	ILMN_1365047	0005690026	S	2034	AGCATCTCTTGGGGCCAGTTTTCCACAGAAGTTTAGGGCTCAGAGGAGGC				8q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6030404E16 (predicted) (LOC363035), mRNA.					
Rattus norvegicus	RefSeq	GI_52486809-I	ILMN_295681	TACC2	NM_001004415.1	NM_001004415.1		309025	52486809	NM_001004415.1	Tacc2	NP_001004415.1	ILMN_1375978	0000380193	I	5391	GACGAGTGTCTCTTCCCCTCCAGAGCCTGATGAAAGCAGTGACGAGAAGC	1	+	189943764-189943813	1q37	Rattus norvegicus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant 1, mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle [goid 22027] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles [goid 30953] [evidence ISS]; Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton [goid 32886] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646749-S	ILMN_282950	RGD1562636_PREDICTED	XR_008278.1	XR_008278.1		502725	109473032	XR_008278.1	RGD1562636_predicted		ILMN_1364499	0002690433	S	72	GATCTCCCCCAAACTGGACAAGTCACTGGGCAGCAAGGAGGAAGCCGGCA				4q12	PREDICTED: Rattus norvegicus similar to protein phosphatase 1, regulatory (inhibitor) subunit 3B (predicted) (RGD1562636_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638318-A	ILMN_300963	HBS1L	NM_001011934.1	NM_001011934.1		293408	58865445	NM_001011934.1	Hbs1l	NP_001011934.1	ILMN_1376943	0006450059	S	2455	AAGGAAGCCTATCTTACTGGGGCTGGGAGAGTCCATCTGTGACCTGGTGC	1	+	16736865-16736914	1p12	Rattus norvegicus Hbs1-like (S. cerevisiae) (Hbs1l), mRNA.		The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662401-S	ILMN_271623	LOC498604	XM_001069426.1	XM_001069426.1		498604	109503951	XM_001069426.1	LOC498604	XP_001069426.1	ILMN_1370033	0005390372	S	1660	GACAGAGAATTGGAAAAGGTTCTTGGTGCCGGTGACAGAGCCCGTGCCCC				16p14	PREDICTED: Rattus norvegicus similar to B-cell novel protein 1 (LOC498604), mRNA.					
Rattus norvegicus	RefSeq	GI_56090330-S	ILMN_264473	LYPD1	NM_001007727.1	NM_001007727.1		360838	56090330	NM_001007727.1	Lypd1	NP_001007728.1	ILMN_1352757	0007000348	S	1683	GGCAGGCGAGAAGAGGAGAGAAAAGGAGACGGGGAGAAAAACAGCATGAG	13	-	38399710-38399759	13q11	Rattus norvegicus Ly6/Plaur domain containing 1 (Lypd1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]			MGC95169; Lypdc1	MGC95169; Lypdc1
Rattus norvegicus	RefSeq	GI_27677097-S	ILMN_50969	AKAP13	XM_214969.4	XM_214969.4		293024	109458926	XM_214969.4	Akap13	XP_214969.4	ILMN_2039408	0000780730	S	4809	CCTGCTGGCTCTGGTGAAATGGAAGAGGAGGAGATGGACAGCATCACTGA	1	+	131284973-131285022	1q31	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein 13 (Akap13), mRNA.		Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_31745167-S	ILMN_271257	RETNLG	NM_181625.1	NM_181625.1		288135	31745167	NM_181625.1	Retnlg	NP_853656.1	ILMN_1351830	0003360110	S	172	GTCAAGGCTACAGGCAGATTGGCCTCCTGTCCTCCTGGAATGGCTGTCAC	11	-	53174731-53174744:53175295-53175330	11q21	Rattus norvegicus resistin-like gamma (Retnlg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence NAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	retn1g	retn1g
Rattus norvegicus	RefSeq	GI_62649209-S	ILMN_265679	RGD1560539_PREDICTED	XM_001055007.1	XM_001055007.1		502966	109476731	XM_001055007.1	RGD1560539_predicted	XP_001055007.1	ILMN_1358990	0003130279	S	269	CACGTGCTGCTTGGAATGAAACCCTCCGATTGTCATTCTGCAAATACCTC				5q32	PREDICTED: Rattus norvegicus similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) (predicted) (RGD1560539_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54400729-S	ILMN_298800	CCT2	NM_001005905.1	NM_001005905.1		299809	54400729	NM_001005905.1	Cct2	NP_001005905.1	ILMN_1355549	0006100131	S	1577	GCGGAAGCAGCAGAGGTGATTCTACGAGTGGACAACATCATCAAAGCGGC	7	-	56393191-56393240	7q22	Rattus norvegicus chaperonin containing TCP1, subunit 2 (beta) (Cct2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence ISS]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC94480	MGC94480
Rattus norvegicus	RefSeq	GI_62078486-S	ILMN_298398	FAM161A	NM_001013876.1	NM_001013876.1		289833	62078486	NM_001013876.1	Fam161a	NP_001013898.1	ILMN_1352280	0006130670	S	1478	CGAGGGCGCGAGCAAGCCATCAGAAGGAGCGAAAAGGCCAGGATGAAAGA	14	+	103702953-103702975:103705473-103705499	14q22	Rattus norvegicus family with sequence similarity 161, member A (Fam161a), mRNA.					
Rattus norvegicus	RefSeq	GI_62639007-S	ILMN_288059	NALP5_PREDICTED	XM_001069546.1	XM_001069546.1		308325	109461101	XM_001069546.1	Nalp5_predicted	XP_001069546.1	ILMN_1356176	0005570113	S	2813	TCCTGGCGTTGATACTGGCAAACAACAGAAAGCTGACGCACCTGAGCCTG				1q12	PREDICTED: Rattus norvegicus NACHT, leucine rich repeat and PYD containing 5 (predicted) (Nalp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660223-S	ILMN_55122	LOC501890	XM_577313.1	XM_577313.1		501890	62660223	XM_577313.1	LOC501890	XP_577313.1	ILMN_1365926	0004280064	S	1379	CTGCCATACATGTGCACTAGACTGGGGTCCTGAGCTGAAGAAAGTATTGA				14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (LOC501890), mRNA.					
Rattus norvegicus	RefSeq	GI_56847617-A	ILMN_272338	KRT16	NM_001008752.1	NM_001008752.1		303530	56847617	NM_001008752.1	Krt16	NP_001008752.1	ILMN_1376926	0000520347	S	627	CAACAACCTTCGCCGTGTGCTGGATGAACTGACTATGTCCAGGGCAGACC	10	-	89176834-89176883	10q32.1	Rattus norvegicus keratin 16 (Krt16), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins [goid 45104] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins [goid 45104] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641855-S	ILMN_290656	MTA2	XM_001077908.1	XM_001077908.1		361724	109463537	XM_001077908.1	Mta2	XP_001077908.1	ILMN_1351228	0000070706	S	3130	GGGAAGAGTAAACATATCAGGTGTTGGTCCCTGGCAGGGGGAAGGGGGAG				1q43	PREDICTED: Rattus norvegicus metastasis-associated gene family, member 2 (Mta2), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]; Any complex that mediates dynamic changes in eukaryotic chromatin [goid 16585] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642290-S	ILMN_296504	ATAD1	NM_001035002.1	NM_001035002.1		309532	78097111	NM_001035002.1	Atad1	NP_001030174.1	ILMN_1369531	0004120706	S	724	GCTGCCAGGTCATAGTGATGGGAGCTACCAATCGTCCTCAAGACCTTGAC	1	-	236696333-236696375:236700280-236700286	1q52	Rattus norvegicus ATPase family, AAA domain containing 1 (Atad1), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	Ab2-088	Ab2-088
Rattus norvegicus	RefSeq	GI_62660883-S	ILMN_273198	PEX13_PREDICTED	XM_001062825.1	XM_001062825.1		305581	109501110	XM_001062825.1	Pex13_predicted	XP_001062825.1	ILMN_1353532	0002060048	S	1758	GCGGTTGAATGAAAGCATTTGCTCATGGCTGTCCCGGGCGTTCTGCTGCT				14q22	PREDICTED: Rattus norvegicus peroxisomal biogenesis factor 13 (predicted) (Pex13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18266689-S	ILMN_280771	DAXX	NM_080891.1	NM_080891.1		140926	18266689	NM_080891.1	Daxx	NP_543167.1	ILMN_1355481	0006350519	S	1852	CCCCCAAGCAAGAGATTTCGGAAGGAAAAGAAGCAACTGGGACCTGGGCC	20	-	5123677-5123726	20p12	Rattus norvegicus death-domain associated protein (Daxx), mRNA.	A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence IEA]	A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells [goid 281] [evidence ISS]; A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells [goid 281] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence ISS]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with an androgen receptor [goid 50681] [evidence ISS]; Interacting selectively with an androgen receptor [goid 50681] [evidence IEA]	MGC156601	MGC156601
Rattus norvegicus	RefSeq	GI_62662065-S	ILMN_284809	RGD1560183_PREDICTED	XM_001079115.1	XM_001079115.1		290501	109502975	XM_001079115.1	RGD1560183_predicted	XP_001079115.1	ILMN_1366454	0006550600	S	2299	CCTTGCAGCTTGACCCTGTGGCAGTAGGCACCAAGGAGAATTACAGTCTC				15q25	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14624 (predicted) (RGD1560183_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666885-S	ILMN_54399	LOC501567	XM_576971.1	XM_576971.1		501567	62666885	XM_576971.1	LOC501567	XP_576971.1	ILMN_1359862	0000540154	S	2076	GAGTGGAAAACTGCCACCTGGAATTAACTCAAACCAGTCCTTACCAGTGG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ36601 (LOC501567), mRNA.					
Rattus norvegicus	RefSeq	GI_62639250-S	ILMN_68435	LOC365207	XM_344866.2	XM_344866.2		365207	62639250	XM_344866.2	LOC365207	XP_344867.2	ILMN_1356524	0006290504	S	2354	GTGGTTTGCTGTCATTTGCCCGATGCTGACCTGGAGGGTAGGGCTGCAAT				1q21	PREDICTED: Rattus norvegicus similar to carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) (LOC365207), mRNA.					
Rattus norvegicus	RefSeq	GI_62648111-S	ILMN_52708	BCL2L13_PREDICTED	XM_232252.4	XM_232252.4		312682	109472571	XM_232252.4	Bcl2l13_predicted	XP_232252.2	ILMN_1369596	0005720369	S	2692	AGAGGGACCCAGGCACTCACTGTAGCTAGTGGGACTCGGCAGTCGCGTAT	4	+	157290930-157290979	4q42	PREDICTED: Rattus norvegicus BCL2-like 13 (apoptosis facilitator) (predicted) (Bcl2l13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576450-S	ILMN_269879	OLR892	NM_001000060.1	NM_001000060.1		288816	47576450	NM_001000060.1	Olr892	NP_001000060.1	ILMN_1363546	0006040575	S	872	GGAACAAGCAAGTGAAACAGGCATTCAGTGACTCTGTAAAGAGAATTTCA	7	-	3231297-3231346	7q11	Rattus norvegicus olfactory receptor 892 (Olr892), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr892	Olr892
Rattus norvegicus	RefSeq	GI_13242282-S	ILMN_285197	GUCY2E	NM_024380.1	NM_024380.1		79222	13242282	NM_024380.1	Gucy2e	NP_077356.1	ILMN_1366846	0006180056	S	3200	CACAGAGCTGAAGGGCAAGGGTGTTGAGGACACGTACTGGCTTGTGGGCA	10	-	56013659-56013696:56013854-56013865	10q24	Rattus norvegicus guanylate cyclase 2e (Gucy2e), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_13929183-A	ILMN_278575	KCNMA1	NM_031828.1	NM_031828.1		83731	13929183	NM_031828.1	Kcnma1	NP_114016.1	ILMN_1376878	0005860601	S	5214	CTTCTGAGTCACCCAAGCAAGTTATGTGGACTGTGGGAGGATCTGGAATG				15p16	Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (Kcnma1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IEA]; Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 44444] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; The membrane portion of the presynaptic active zone; it is the site where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters [goid 48787] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IEA]; The regulation of the levels, transport, and metabolism of potassium ions within a cell or between a cell and its external environment [goid 30007] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids [goid 31960] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving aldosterone [goid 32344] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving aldosterone [goid 32344] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus [goid 34465] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence ISS]; Any process that modulates the frequency, rate or extent of increases in the diameter of blood vessels [goid 42312] [evidence IDA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; The rhythm of the locomotor activity of an organism during its 24 hour activity cycle [goid 45475] [evidence ISS]; The rhythm of the locomotor activity of an organism during its 24 hour activity cycle [goid 45475] [evidence IEA]; Any process that decreases cell volume [goid 45794] [evidence ISS]; Any process that decreases cell volume [goid 45794] [evidence IEA]; The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin [goid 46541] [evidence ISS]; The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin [goid 46541] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence ISS]; The regulation of body fluids process by which parasympathetic nerves stimulate the bladder wall muscle to contract and expel urine from the body [goid 60073] [evidence ISS]; The reflex process by which a mechanical stimulus applied to the eye elicits a response of the eyelid closing [goid 60082] [evidence ISS]; The reflex process by which a mechanical stimulus applied to the eye elicits a response of the eyelid closing [goid 60082] [evidence IEA]; The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body [goid 60083] [evidence ISS]; The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body [goid 60083] [evidence ISS]; The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body [goid 60083] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle contraction [goid 60087] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle contraction [goid 60087] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence ISS]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence ISS]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IDA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Catalysis of the transmembrane transfer of potassium by a channel with a unit conductance of 100 to 220 picoSiemens that opens in response to stimulus by concerted actions of internal calcium ions and membrane potential. Large conductance calcium-activated potassium channels are less sensitive to calcium than are small or intermediate conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 60072] [evidence ISS]; Catalysis of the transmembrane transfer of potassium by a channel with a unit conductance of 100 to 220 picoSiemens that opens in response to stimulus by concerted actions of internal calcium ions and membrane potential. Large conductance calcium-activated potassium channels are less sensitive to calcium than are small or intermediate conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 60072] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17610306] [evidence IPI]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kcnma; Slo	Kcnma; Slo
Rattus norvegicus	RefSeq	GI_62641408-S	ILMN_289525	RGD1564300_PREDICTED	XM_001053680.1	XM_001053680.1		361661	109463026	XM_001053680.1	RGD1564300_predicted	XP_001053680.1	ILMN_1372883	0005050039	S	1184	AAGCTGATGAGACCCTCCGAAGAACCATCTCTCAGACGATGAGGGAAGCC				1q41	PREDICTED: Rattus norvegicus similar to phosphoseryl-tRNA kinase (predicted) (RGD1564300_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34872267-S	ILMN_56026	RGD1560424_PREDICTED	XM_233601.3	XM_233601.3		298595	109475740	XM_233601.3	RGD1560424_predicted	XP_233601.3	ILMN_1374849	0005420142	S	1741	TGCCTGGAGCCGCTGACAAACGTCCCCTCCAACCAGCAGACCTCAAAACT	5	-	159562483-159562532	5q36	PREDICTED: Rattus norvegicus similar to Peptidyl arginine deiminase, egg and embryo abundant (predicted) (RGD1560424_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646454-S	ILMN_284408	RNPC1_PREDICTED	XM_001054287.1	XM_001054287.1		366262	109471420	XM_001054287.1	Rnpc1_predicted	XP_001054287.1	ILMN_1357070	0004150138	S	1488	AGTTCTCAGGTGTCTGTTGCTGTGCCATGGGGGCCTTCTTCTGGCCCTGT				3q42	PREDICTED: Rattus norvegicus RNA-binding region (RNP1, RRM) containing 1 (predicted) (Rnpc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14389294-S	ILMN_269736	PI4KB	NM_031083.1	NM_031083.1		81747	14389294	NM_031083.1	Pi4kb	NP_112345.1	ILMN_1349824	0000510400	S	2962	GGTAACCATGAGAGCTGGCCAAAGGGTAGGAGAGCCAACCATGGGGTCCA	2	+	189906378-189906427	2q34	Rattus norvegicus phosphatidylinositol 4-kinase, catalytic, beta (Pi4kb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence TAS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence IDA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758759-S	ILMN_263892	MAP3K1	NM_053887.1	NM_053887.1		116667	16758759	NM_053887.1	Map3k1	NP_446339.1	ILMN_1369633	0006860008	S	5029	AAACTCGCGGGCAGCCACGTTGATAGTCTGCTGGCCTCATACCACTGACC	2	-	43062346-43062395	2q14	Rattus norvegicus mitogen activated protein kinase kinase kinase 1 (Map3k1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IDA]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IDA]; Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IMP]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; The initiation of the activity of the inactive enzyme JUN kinase kinase (JNKK) activity in response to phosphorylation by a member of the JUN kinase kinase kinase (JNKKK) family, or another upstream kinase. JNKKs are involved in a signaling pathway that is primarily activated by cytokines and exposure to environmental stress [goid 7256] [evidence IDA]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence ISS]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence IEA]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence ISS]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence IEA]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IDA]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the assembly of actin filament bundles [goid 32232] [evidence IDA]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEA]; The process by which a ubiquitin moiety, or multiple moieties, are covalently attached to the target protein, thereby initiating the degradation of that protein [goid 42787] [evidence IGI]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of viral transcription [goid 50434] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of JUN kinase kinases (JNKKs) [goid 4706] [evidence IDA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IEA];  [goid 4710] [evidence IDA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family [goid 8432] [evidence IPI]; Catalysis of the phosphorylation of tyrosine and threonine residues in a c-Jun NH2-terminal kinase (JNK), a member of a subgroup of mitogen-activated protein kinases (MAPKs), which signal in response to cytokines and exposure to environmental stress. JUN kinase kinase (JNKK) is a dual-specificity protein kinase kinase and requires activation by a serine/threonine kinase JUN kinase kinase kinase [goid 8545] [evidence ISS]; Catalysis of the phosphorylation of tyrosine and threonine residues in a c-Jun NH2-terminal kinase (JNK), a member of a subgroup of mitogen-activated protein kinases (MAPKs), which signal in response to cytokines and exposure to environmental stress. JUN kinase kinase (JNKK) is a dual-specificity protein kinase kinase and requires activation by a serine/threonine kinase JUN kinase kinase kinase [goid 8545] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]; Interacting selectively with sphingolipids, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 46625] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase [goid 51019] [evidence IPI]	Mekk1	Mekk1
Rattus norvegicus	RefSeq	GI_62661025-S	ILMN_262564	ZMYND17_PREDICTED	XM_001056023.1	XM_001056023.1		289904	109502086	XM_001056023.1	Zmynd17_predicted	XP_001056023.1	ILMN_1367172	0005910397	S	1239	CGCATCCCTCAAACCAGAACAGGTCTATTCCAAGCCCAACAAGCAACCGG				15p16	PREDICTED: Rattus norvegicus zinc finger, MYND domain containing 17 (predicted) (Zmynd17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638666-S	ILMN_265784	SMOC2_PREDICTED	XM_001053117.1	XM_001053117.1		292401	109460847	XM_001053117.1	Smoc2_predicted	XP_001053117.1	ILMN_1360317	0003390097	S	2669	CCCCAGCCTCTCAGTCTACGTCTGTGGCTGCATTGTGAACACACGTTGCG				1q12	PREDICTED: Rattus norvegicus SPARC related modular calcium binding 2 (predicted), transcript variant 2 (Smoc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656340-S	ILMN_61355	YBX2_PREDICTED	XM_220618.4	XM_220618.4		303250	109488394	XM_220618.4	Ybx2_predicted	XP_220618.3	ILMN_1360787	0006020577	S	1105	CCCACCACCATACTGGAGTGATTCCAACTCAGAGGACACCCAGAGCTACC	10	+	56785533-56785553:56785554-56785582	10q24	PREDICTED: Rattus norvegicus Y box protein 2 (predicted) (Ybx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652045-S	ILMN_49520	MRPL42_PREDICTED	XM_216882.4	XM_216882.4		299743	109480457	XM_216882.4	Mrpl42_predicted	XP_216882.3	ILMN_1351838	0002640594	S	206	CCAGACGACTACAATTGCAAGGTAGAGCTGGCATTGACGTCTGATGGCAG	7	-	32697771-32697804:32702598-32702613	7q13	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L42 (predicted) (Mrpl42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647690-S	ILMN_55644	TEX261_PREDICTED	XM_216192.3	XM_216192.3		297392	62647690	XM_216192.3	Tex261_predicted	XP_216192.2	ILMN_1357216	0001740041	S	1802	GAGTGGGGGAGGGGGTAGAAAGTTTATGGCTGGGTTAGAGATGCAGACCG				4q34	PREDICTED: Rattus norvegicus testis expressed gene 261 (predicted) (Tex261_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650779-S	ILMN_270954	SOS2	XM_001080400.1	XM_001080400.1		85384	109479475	XM_001080400.1	Sos2	XP_001080400.1	ILMN_1358348	0003440497	S	3906	CCTACCAAAACTGCCACCAAAGACTTACAAGCGGGAGCTTTCACACCCGC					PREDICTED: Rattus norvegicus son of sevenless homolog 2 (Drosophila) (Sos2), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641613-S	ILMN_49176	EPS8L2_PREDICTED	XM_341958.3	XM_341958.3		361674	109459595	XM_341958.3	Eps8l2_predicted	XP_341959.2	ILMN_1367112	0001050279	S	2922	GCACCAGACATAGGTTCTGACTTCAAATGTCCCATCCCGCCCAAAGAGCC	1	+	201560574-201560623	1q41	PREDICTED: Rattus norvegicus EPS8-like 2 (predicted) (Eps8l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659042-S	ILMN_264795	ALKBH2_PREDICTED	XM_001080423.1	XM_001080423.1		304578	109497501	XM_001080423.1	Alkbh2_predicted	XP_001080423.1	ILMN_1365422	0001400075	S	896	TGTGACCACATTGGGGAGCACAGAGACGATGAACGAGAACTGGCCCCGGG				12q16	PREDICTED: Rattus norvegicus alkB, alkylation repair homolog 2 (E. coli) (predicted) (Alkbh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656835-S	ILMN_265410	RGD1304870_PREDICTED	XM_001081215.1	XM_001081215.1		287912	109491626	XM_001081215.1	RGD1304870_predicted	XP_001081215.1	ILMN_1365737	0001770577	S	382	GACAGTGTCTGGTGCATCAAGCCAGAAGCAGCCGCAGGGATGGAAGTGTT				10q26	PREDICTED: Rattus norvegicus similar to Tceb2 protein (predicted) (RGD1304870_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663544-S	ILMN_265751	LOC684287	XM_001069729.1	XM_001069729.1		684287	109505743	XM_001069729.1	LOC684287	XP_001069729.1	ILMN_1363404	0000520722	S	128	TCAGAGCTGCAGCGGTTCGGGTGGGCAGCATCATGGATGAGAAGATGCTC					PREDICTED: Rattus norvegicus similar to prolactin-like protein 1 (LOC684287), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647975	ILMN_293965	LY49I5	NM_001009501.2	NM_001009501.2		494211	61889122	NM_001009501.2	Ly49i5	NP_001009501.1	ILMN_1650344	0002100347	S	552	TCCCCTCAGCACACAGCCAGGTGTGTTGAAATGCACTGGTTCTGCCATGG	4	-	167857613-167857648:167858675-167858688	4q42	Rattus norvegicus Ly49 inhibitory receptor 5 (Ly49i5), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646956-S	ILMN_262489	TNPO3	XM_001064267.1	XM_001064267.1		296954	109473260	XM_001064267.1	Tnpo3	XP_001064267.1	ILMN_1355068	0001090142	S	3320	TACCATCCCGCCACACAGGGAGAGACTTCACCCTCCAAGGCATCCTAAGG				4q22	PREDICTED: Rattus norvegicus transportin 3 (Tnpo3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_12083630-S	ILMN_284146	BID	NM_022684.1	NM_022684.1		64625	12083630	NM_022684.1	Bid	NP_073175.1	ILMN_1373775	0006220438	S	820	ACACTGGAGTGAAGCCAGGTCCCAGAGAACAGCCGCGTCTCCCTATTTCC	4	-	157296547-157296596	4q42	Rattus norvegicus BH3 interacting domain death agonist (Bid), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34866294-S	ILMN_64278	LOC302112	XM_229683.2	XM_229683.2		302112	34866294	XM_229683.2	LOC302112	XP_229683.2	ILMN_1360283	0006450746	S	293	GGCGGCAGAAGAGGAGGAGACTGTAGAGGCTGACGTGTCGGAGGAAGAAA				6q24	PREDICTED: Rattus norvegicus similar to M phase phosphoprotein 6 (LOC302112), mRNA.					
Rattus norvegicus	RefSeq	GI_61556929-S	ILMN_279113	CREB3	NM_001013092.1	NM_001013092.1		298400	61556929	NM_001013092.1	Creb3	NP_001013110.1	ILMN_1353224	0004120619	S	996	CTGTATTCACATAAAAAGGAGTAGGGGAGAGCCAGCCTTTGCTCACGGGC	5	+	60045314-60045363	5q22	Rattus norvegicus cAMP responsive element binding protein 3 (Creb3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 8140] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with a CCR1 chemokine receptor [goid 31726] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717948-S	ILMN_57207	LOC503310	XM_578845.1	XM_578845.1		503310	62717948	XM_578845.1	LOC503310	XP_578845.1	ILMN_1352765	0002640632	S	2	GGGGTTGCTGGCTCTTATGGCTCCTTCATGTAGAAAGGAGCTTCCATCTC					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503310), mRNA.					
Rattus norvegicus	RefSeq	GI_62650742-S	ILMN_268311	RGD1307621_PREDICTED	XM_001080064.1	XM_001080064.1		314168	109479446	XM_001080064.1	RGD1307621_predicted	XP_001080064.1	ILMN_1356927	0002450601	S	895	GGGTGTGGTGGCTTAAGAGAATTTTCCCAACGAGTTTTCTGCCACGGGGC				6q24	PREDICTED: Rattus norvegicus hypothetical LOC314168 (predicted) (RGD1307621_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656779-S	ILMN_294480	LOC303448	NM_001037190.1	NM_001037190.1		303448	81295342	NM_001037190.1	LOC303448	NP_001032267.1	ILMN_1363990	0000870685	S	1081	TTGACCTCATGGCCTACATGGCCTTGAAGGAGTAAGAAACCCAGACCCAC	10	-	79571734-79571749:79571750-79571783	10q26	Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC303448), mRNA.		The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MGC114475	MGC114475
Rattus norvegicus	RefSeq	GI_34880911-S	ILMN_65089	LOC360875	XM_346923.1	XM_346923.1		360875	34880911	XM_346923.1	LOC360875	XP_346924.1	ILMN_1349093	0006510239	S	173	GGCTAACGCTGGGACGATGAATTGCTTGCACTCTTGGAGAAGCCCATACC					PREDICTED: Rattus norvegicus hypothetical LOC360875 (LOC360875), mRNA.					
Rattus norvegicus	RefSeq	GI_62662655-S	ILMN_50650	ENPP6_PREDICTED	XM_224853.4	XM_224853.4		306460	109503346	XM_224853.4	Enpp6_predicted	XP_224853.3	ILMN_1368726	0004200301	S	1054	AGCAGAGAGTCGAGAGGCGCTTCCGTTTTGGATGAACAGCACCGGCAAGC	16	-	48397442-48397485:48416912-48416917	16q11	PREDICTED: Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 6 (predicted) (Enpp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654055-S	ILMN_60994	LOC300874	XM_217220.3	XM_217220.3		300874	62654055	XM_217220.3	LOC300874	XP_217220.3	ILMN_1371583	0004210170	S	8	GCAGACAGATATTCACACGGGTGTGAGTGTGCAAATAGAACCATCCAGGC				8q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (LOC300874), mRNA.					
Rattus norvegicus	RefSeq	GI_62652369-S	ILMN_65775	RGD1310430_PREDICTED	XM_343234.3	XM_343234.3		362905	109480693	XM_343234.3	RGD1310430_predicted	XP_343235.1	ILMN_1368465	0004150433	S	1095	CTCAACTTGCCTTGTGCTGGGCGTAAGCGGGAAGATGGAGGTGTCCGTGG	7	+	79300181-79300230	7q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921531G14 (predicted) (RGD1310430_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659482	ILMN_280506	APOBEC4	NM_001017492.1	NM_001017492.1		498251	62945335	NM_001017492.1	Apobec4	NP_001017492.1	ILMN_1649792	0001580193	S	1175	GAAATCTCCCTCGGGCAGGCCAGTGAAGAAGGAGGAGGCTAGGAAGGGGT	13	+	67745554-67745603	13q21	Rattus norvegicus apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) (Apobec4), mRNA.		Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2 [goid 16814] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Apobec4	Apobec4
Rattus norvegicus	RefSeq	GI_40538867-S	ILMN_300534	BRE	NM_199270.1	NM_199270.1		362704	40538867	NM_199270.1	Bre	NP_954891.1	ILMN_1365962	0004120563	S	1301	TTCCTGGAAGCCGCTTGGAATGTCTTCATGGCGGCCTTTTGCTCACGCAG	6	-	24407018-24407067	6q13	Rattus norvegicus brain and reproductive organ-expressed protein (Bre), mRNA.	A ubiquitin ligase complex found in the nucleus [goid 152] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence ISS]	Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence ISS]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664611-S	ILMN_50475	POLI_PREDICTED	XM_225844.4	XM_225844.4		291526	109506761	XM_225844.4	Poli_predicted	XP_225844.4	ILMN_1359813	0003190133	S	2138	GAGAACTGATGGCCGAATGGAAGAGAGCTGGGGCAGAGTTCCCCTCTGTG	18	-	67213119-67213168	18q12.1	PREDICTED: Rattus norvegicus polymerase (DNA directed), iota (predicted) (Poli_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27670433-S	ILMN_161737	LOC299458	XM_234734.1	XM_234734.1			27670433	XM_234734.1	LOC299458		ILMN_2040142	0004780056	S	27	TGTGGCAACAGCTACAGGTGTCCACTCCCAGGTCAAGCTGCTGCAGTCTG					Rattus norvegicus similar to Ig H-chain V-region precursor (LOC299458), mRNA.					
Rattus norvegicus	RefSeq	GI_62655410-S	ILMN_266482	RGD1563692_PREDICTED	XM_001070416.1	XM_001070416.1		501185	109487522	XM_001070416.1	RGD1563692_predicted	XP_001070416.1	ILMN_1365106	0001580524	S	1486	CCCTGCCAGTGACCCTACCTACTGGACCACAGCCTACTTTGATTTTCTGC				9q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22671 (predicted) (RGD1563692_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664332-S	ILMN_62088	LOC498853	XM_574138.1	XM_574138.1		498853	62664332	XM_574138.1	LOC498853	XP_574138.1	ILMN_1373326	0006180450	S	29	GGACTTGAAGACAGCCACTGCCATCGTCCTTGTGTGGAAAGGAACTAGGG				18p11	PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC498853), mRNA.					
Rattus norvegicus	RefSeq	GI_48843736-A	ILMN_279861	FANCD2	NM_001001719.1	NM_001001719.1		312641	48843736	NM_001001719.1	Fancd2	NP_001001719.1	ILMN_1376860	0001570164	S	4033	TGTGGACACTCCAAGATTCACCAGGACACAAGACTCACCAAACATGTGCC	4	+	149493736-149493750:149495260-149495294	4q42	Rattus norvegicus Fanconi anemia, complementation group D2 (Fancd2), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The cell cycle process whereby the side by side pairing and physical juxtaposition of homologous chromosomes is created at the metaphase plate [goid 7129] [evidence ISS]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666820-S	ILMN_50661	LOC317494	XM_228942.3	XM_228942.3		317494	62666820	XM_228942.3	LOC317494	XP_228942.3	ILMN_1352527	0004060148	S	6692	GACAATGACAGAACACACCAGGGTCACCAAGAAATTGATGAACAGCTGGC				Xq21	PREDICTED: Rattus norvegicus similar to Nance-Horan syndrome protein (LOC317494), mRNA.					
Rattus norvegicus	RefSeq	GI_62659093-S	ILMN_266499	LOC498196	XM_001070664.1	XM_001070664.1		498196	109496575	XM_001070664.1	LOC498196	XP_001070664.1	ILMN_1370570	0002060358	S	873	GATGATTCCAACATATCCTCTTCAACGTGACCCACAGCACTGGACGGAGC					PREDICTED: Rattus norvegicus similar to Cytochrome P450 3A2 (CYPIIIA2) (P450-PCN2) (P450/6-beta-A) (Testosterone 6-beta-hydroxylase) (LOC498196), mRNA.					
Rattus norvegicus	RefSeq	GI_62645260-S	ILMN_49920	LOC499812	XM_575152.1	XM_575152.1		499812	62645260	XM_575152.1	LOC499812	XP_575152.1	ILMN_1367426	0006220440	S	778	CAGCCGGCGACTAGAGCCCACCTCTGCAGAGACAAAGGCATCCAAGGTTT					PREDICTED: Rattus norvegicus LOC499812 (LOC499812), mRNA.					
Rattus norvegicus	RefSeq	GI_62641037-S	ILMN_288870	FOLR2_PREDICTED	XM_001067815.1	XM_001067815.1		293154	109462537	XM_001067815.1	Folr2_predicted	XP_001067815.1	ILMN_1354017	0003870164	S	399	GGAGTGGTGGGAAGCCTGTCGTACCTCCTTTACCTGCAAGAGAGACTGGC				1q32	PREDICTED: Rattus norvegicus folate receptor 2 (fetal) (predicted) (Folr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651119-S	ILMN_48110	STON2_PREDICTED	XM_234454.4	XM_234454.4		314349	109478596	XM_234454.4	Ston2_predicted	XP_234454.4	ILMN_1372835	0006220008	S	2447	CTCTGGGAACAGCCAAGTACGAGCACGCCTTCAACTCCATTGTGTGGAGG	6	-	115266961-115267010	6q31	PREDICTED: Rattus norvegicus stonin 2 (predicted) (Ston2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650496-S	ILMN_284593	RGD1563464_PREDICTED	XR_008916.1	XR_008916.1		313970	109479165	XR_008916.1	RGD1563464_predicted		ILMN_1369945	0001770195	S	956	ACTACAGCAACAGGGTTGTGGACGTCATGGCCTACATGGCCTACAAGGAG				6q15	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1563464_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656811-S	ILMN_290416	RGD1562534_PREDICTED	XM_001080900.1	XM_001080900.1		363648	109491436	XM_001080900.1	RGD1562534_predicted	XP_001080900.1	ILMN_1358049	0002690711	S	67	GAACAAAAGCAAGGAGTTGGCCGGATGGAGACCACCCAGGAAAGCCTGCG					PREDICTED: Rattus norvegicus similar to Insulin-like growth factor binding protein 4 precursor (IGFBP-4) (predicted) (RGD1562534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641379-S	ILMN_286306	LOC309016	XM_001080483.1	XM_001080483.1		309016	109462987	XM_001080483.1	LOC309016	XP_001080483.1	ILMN_1356622	0000430504	S	4210	AGGACACAGCAGGGCAGAAGCATTTGAAGACAGCCCACCACAGCACTTTC				1q37	PREDICTED: Rattus norvegicus similar to bromodomain and WD repeat domain containing 2 (LOC309016), mRNA.					
Rattus norvegicus	RefSeq	GI_16418472-S	ILMN_283947	A	NM_052979.1	NM_052979.1		24152	16418472	NM_052979.1	A	NP_443211.1	ILMN_1358051	0003830113	S	605	GGCTTATAGGTGGGCGTGGCCAGTGGTTGTGAGTTGTGGGCGCTTTCAGA	3	+	145536741-145536790	3q42	Rattus norvegicus agouti (A), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IEA]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence ISS]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored [goid 32438] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored [goid 32438] [evidence IEA]; The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 42438] [evidence ISS]; The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 42438] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40789236-S	ILMN_268869	PCDHA4	NM_053933.1	NM_053933.1		116741	40789236	NM_053933.1	Pcdha4	NP_446385.1	ILMN_1360132	0001050020	S	2170	TCCACTGTCCCCAGTGAGAGCGTGTGCGGGCCTCCAAAACCAGTAATGGT	18	+	29685647-29685696	18p11	Rattus norvegicus protocadherin alpha 4 (Pcdha4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence NAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cnr1; MGC93781	Cnr1; MGC93781
Rattus norvegicus	RefSeq	GI_16758719-S	ILMN_297893	NAT2	NM_053854.1	NM_053854.1		116632	16758719	NM_053854.1	Nat2	NP_446306.1	ILMN_1356946	0001500592	S	993	CTTGCAGACCCTAGAAGGGGTTCACTGTTTGGTTGGCTCCACCCTCACTT	16	-	23845921-23845970	16p14	Rattus norvegicus N-Acetyltransferase-2 (arylamine N-acetyltransferase) (Nat2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence IDA]; Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence IEA]; Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence TAS]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652813-S	ILMN_298537	SREBF2	NM_001033694.1	NM_001033694.1		300095	76096331	NM_001033694.1	Srebf2	NP_001028866.1	ILMN_1354176	0001740053	S	3173	AAGGCTGGCCCACAGTTTCCGCCCAGCATACCGCAAGGTGTTCCTGCATG	7	+	120574853-120574889:120578165-120578177	7q34	Rattus norvegicus sterol regulatory element binding transcription factor 2 (Srebf2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence TAS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	SREBP-2; MGC124823; SREBP2; Srebf2_retired	SREBP-2; MGC124823; SREBP2; Srebf2_retired
Rattus norvegicus	RefSeq	GI_62655328-S	ILMN_63557	FBXO36_PREDICTED	XM_343610.3	XM_343610.3		363268	109486301	XM_343610.3	Fbxo36_predicted	XP_343611.1	ILMN_1363613	0002120377	S	502	CAGCTCCAGAGGCAGATCCGCAAGAAGAAGCAAAGACAGGGAAGCGAGAC	9	+	84164557-84164606	9q35	PREDICTED: Rattus norvegicus F-box only protein 36 (predicted) (Fbxo36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758025-S	ILMN_294851	SYT8	NM_053325.1	NM_053325.1		60566	16758025	NM_053325.1	Syt8	NP_445777.1	ILMN_1357428	0002370348	S	876	AACATCCTCCAAGAAGGGCACAACTAACCCCTACTTCAACGAGGCCTTCG	1	+	202685731-202685780	1q41	Rattus norvegicus synaptotagmin VIII (Syt8), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577252-S	ILMN_281548	OLR728	NM_001000363.1	NM_001000363.1		295917	47577252	NM_001000363.1	Olr728	NP_001000363.1	ILMN_1355717	0003610288	S	643	TCCTATGTGGTCATCCTTCGCTCCCTGAGGAATCACAGTTCAGAAGGGCG	3	+	74436805-74436854	3q24	Rattus norvegicus olfactory receptor 728 (Olr728), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-74332535-74333464_ORF; tpcr06	ratchr3-74332535-74333464_ORF; tpcr06
Rattus norvegicus	RefSeq	GI_62658988-S	ILMN_269189	CIT	NM_001029911.1	NM_001029911.1		83620	71361668	NM_001029911.1	Cit	NP_001025082.1	ILMN_1364883	0002680288	S	5941	GCAGCAGCCCTAACAAGCGAGGCCCACCAACATACAACGAGCACATCACC	12	-	41859413-41859459:41864893-41864895	12q16	Rattus norvegicus citron (rho-interacting, serine/threonine kinase 21) (Cit), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IMP]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]	The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets [goid 70] [evidence ISS]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IMP]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence NAS]; A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IMP]; The cell cycle process whereby a cell progresses from metaphase to anaphase during mitosis, triggered by the destruction of mitotic cyclins [goid 7091] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8064] [evidence IPI]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The process by which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons [goid 48699] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of dendrite morphogenesis [goid 50774] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence TAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506474-S	ILMN_282538	CDC2	NM_019296.1	NM_019296.1		54237	9506474	NM_019296.1	Cdc2	NP_062169.1	ILMN_1358490	0006770440	S	839	GGGAGCCTCGCGTCCCACGTCAAGAACCTGGATGAAAACGGCTTGGACTT	20	+	20030682-20030731	20p11	Rattus norvegicus cell division cycle 2, G1 to S and G2 to M (Cdc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]; A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis [goid 30496] [evidence ISS]	Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; A signal transduction-based surveillance mechanism that acts during a mitotic cell cycle to ensure accurate chromosome segregation by preventing entry into mitosis in the presence of damaged DNA [goid 7095] [evidence ISS]; A signal transduction-based surveillance mechanism that acts during a mitotic cell cycle to ensure accurate chromosome segregation by preventing entry into mitosis in the presence of damaged DNA [goid 7095] [evidence IEA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IDA]; The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells [goid 30261] [evidence IMP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IEP]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + (DNA-directed RNA polymerase) = ADP + phospho-(DNA-directed RNA polymerase) [goid 8353] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence IPI]; Interacting selectively with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size [goid 30544] [evidence ISS]; Interacting selectively with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size [goid 30544] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652955-S	ILMN_289923	PUS7L_PREDICTED	XM_001058268.1	XM_001058268.1		315264	109482784	XM_001058268.1	Pus7l_predicted	XP_001058268.1	ILMN_1349169	0005270128	S	1958	TGAAACACCCCCACAATGTATCACACCGACTGGTCCATCCCGACCCCGCC				7q35	PREDICTED: Rattus norvegicus pseudouridylate synthase 7 homolog (S. cerevisiae)-like (predicted) (Pus7l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658348-S	ILMN_66528	LOC363853	XM_344062.2	XM_344062.2		363853	62658348	XM_344062.2	LOC363853	XP_344063.2	ILMN_1357825	0000050279	S	739	GTGTCCCTCAGTCAGGTGGTGGGAGACCAAGACCAGGGAAATACCAGGTG					PREDICTED: Rattus norvegicus similar to Fibrillin 3 precursor (LOC363853), mRNA.					
Rattus norvegicus	RefSeq	GI_35215303-S	ILMN_267014	ASAM	NM_173154.1	NM_173154.1		286939	35215303	NM_173154.1	Asam	NP_775177.1	ILMN_1365205	0006220400	S	3668	GCCCGAAGACAGAGTGAGAGCCATGACGGGCTCCAAACCTTACTCCATTG	8	+	43769243-43769292	8q22	Rattus norvegicus adipocyte-specific adhesion molecule (Asam), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]			Ol16; CLMP; ACAM	Ol16; CLMP; ACAM
Rattus norvegicus	RefSeq	GI_11177873-S	ILMN_263763	LOC502613	XR_006084.1	XR_006084.1		502613	109467938	XR_006084.1	LOC502613		ILMN_1370153	0005860750	S	185	CTGCGGAGGAAACCGGCGAGGAGAAGCAGGATACACAGGAGAAAGAAGGT	3	+	5781379-5781428	3p12	PREDICTED: Rattus norvegicus similar to endosulfine alpha isoform 2 (LOC502613), mRNA.					
Rattus norvegicus	RefSeq	GI_27677235-S	ILMN_268543	SNRPD2_PREDICTED	XM_001054247.1	XM_001054247.1		292688	109510074	XM_001054247.1	Snrpd2_predicted	XP_001054247.1	ILMN_1353053	0006180059	S	280	AGGAGATATGGACTGAGGTCCCCAAGAGCGGCAAGGGCAAGAAGAAGTCC					PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein D2 (predicted) (Snrpd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717926-S	ILMN_268543	SNRPD2_PREDICTED	XM_001054247.1	XM_001054247.1		292688	109510074	XM_001054247.1	Snrpd2_predicted	XP_001054247.1	ILMN_1359518	0000580068	S	402	AACCCGCTCATCGCTGGCAAGTAAAATGGAGGCCAGCCTCAGCCCTCTGA					PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein D2 (predicted) (Snrpd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644972-S	ILMN_58205	GAPVD1_PREDICTED	XM_231161.4	XM_231161.4		311880	109468052	XM_231161.4	Gapvd1_predicted	XP_231161.4	ILMN_1355312	0002230019	S	4871	CGATGACAGAAAGTGACCAAGACCAGGCCCACCAAGGCAGCAGACTGTAG	3	-	13696122-13696156:13696157-13696171	3p11	PREDICTED: Rattus norvegicus GTPase activating protein and VPS9 domains 1 (predicted) (Gapvd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21717662-S	ILMN_296703	RASD2	NM_133568.1	NM_133568.1		171099	21717662	NM_133568.1	Rasd2	NP_598252.1	ILMN_1357585	0003940075	S	3331	TCCTGCAGTGACCCCAGCCTCAACCCCGAGAGTATACCAGGTACTTGTCC	19	+	14103856-14103905	19p11	Rattus norvegicus RASD family, member 2 (Rasd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]	Rhes	Rhes
Rattus norvegicus	RefSeq	GI_6981121-S	ILMN_280520	KCNC1	XM_001080138.1	XM_001080138.1		25327	109461984	XM_001080138.1	Kcnc1	XP_001080138.1	ILMN_2040259	0004890338	S	2433	AAATTCACACTGCCACCCTCTTCCACCTCCGTTTGGCATGCTTGCGACCC				1q22	PREDICTED: Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 1, transcript variant 2 (Kcnc1), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40018579-S	ILMN_280826	MGC72560	NM_199102.1	NM_199102.1		308869	40018579	NM_199102.1	MGC72560	NP_954533.1	ILMN_1352579	0006660066	S	735	TTGCCATCGGCCTTCATGCTCTGGTTAGGGTGAGGTTGGGGCCAAGAGGA	1	+	159372705-159372754	1q32	Rattus norvegicus hypothetical LOC308869 (MGC72560), mRNA.					
Rattus norvegicus	RefSeq	GI_62655351-S	ILMN_64822	LOC363271	XM_347118.2	XM_347118.2		363271	62655351	XM_347118.2	LOC363271	XP_347119.1	ILMN_1355132	0005220022	S	82	GACTCTGATGTCGGTTGGGTCATCGCGGGGTCTTGATTCCTGGGACTTCC					PREDICTED: Rattus norvegicus hypothetical LOC363271 (LOC363271), mRNA.					
Rattus norvegicus	RefSeq	GI_62660861	ILMN_266982	EHBP1_PREDICTED	XM_001056760.1	XM_001056760.1		305556	109501043	XM_001056760.1	Ehbp1_predicted	XP_001056760.1	ILMN_1650732	0004480037	S	3664	ATAGAAGACTGGCAGAAGACCGAGGCCCAGAAGCGACGGGAACAGCTCCT				14q22	PREDICTED: Rattus norvegicus EH domain binding protein 1 (predicted), transcript variant 2 (Ehbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647107-S	ILMN_274256	LOC312273	XM_001071129.1	XM_001071129.1		312273	109473399	XM_001071129.1	LOC312273	XP_001071129.1	ILMN_1371476	0006290368	S	446	GAGTGCCTGGTGTCTGGCTGGGGTGTTCTGAAATTTGGCTTTGAGAGTCC				4q22	PREDICTED: Rattus norvegicus Trypsin V-A (LOC312273), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660830-S	ILMN_265334	PLEK	NM_001025750.1	NM_001025750.1		364206	71043673	NM_001025750.1	Plek	NP_001020921.1	ILMN_1352911	0001400093	S	1482	CAATCTTGTGCCTGTATAACTTGCCAGGGGAACTCTGGAGACCTCACGGA	14	-	97841711-97841760	14q22	Rattus norvegicus pleckstrin (Plek), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]		MGC112902	MGC112902
Rattus norvegicus	RefSeq	GI_62646386	ILMN_59528	LOC499944	XM_580036.1	XM_580036.1		499944	62646386	XM_580036.1	LOC499944	XP_580036.1	ILMN_1650766	0006420347	S	271	GGCGGTCCTGGCATCTGAAGGGCAGCAGCACACCCAACTTTTCTTCTTGT					PREDICTED: Rattus norvegicus LOC499944 (LOC499944), mRNA.					
Rattus norvegicus	RefSeq	GI_62663209-S	ILMN_276255	DOK3_PREDICTED	XM_001069255.1	XM_001069255.1		306760	109505462	XM_001069255.1	Dok3_predicted	XP_001069255.1	ILMN_1370914	0004050440	S	1419	CAACTTTTGACCTGCAGGGACAAGCCAGGAGGCTTAGTGAGGAGCCACAC				17p14	PREDICTED: Rattus norvegicus docking protein 3 (predicted) (Dok3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34859257	ILMN_277456	CRLS1	NM_001014258.1	NM_001014258.1		366196	62079246	NM_001014258.1	Crls1	NP_001014280.1	ILMN_1650170	0002510110	S	750	CGCTGCTGTGTTTTATGTCAGATACCGAACTCTGCCAACACCGCGAACAC	3	+	120660870-120660912:120661761-120661767	3q36	Rattus norvegicus cardiolipin synthase 1 (Crls1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor) [goid 16780] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47058969-S	ILMN_301159	OLR1750	NM_212493.1	NM_212493.1		294204	47058969	NM_212493.1	Olr1750	NP_997658.1	ILMN_1357723	0006900092	S	883	GTAAAGAGGGCACTCAAGAGGCTGCTGTGGAAGGAAGTAGAGCCCACGTG	20	+	1543708-1543757	20p12	Rattus norvegicus olfactory receptor 1750 (Olr1750), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or1; MOR256-21; Olr1750; Olfr90	Or1; MOR256-21; Olr1750; Olfr90
Rattus norvegicus	RefSeq	GI_62664397-S	ILMN_48985	LOC498862	XM_579876.1	XM_579876.1		498862	62664397	XM_579876.1	LOC498862	XP_579876.1	ILMN_1369739	0000060181	S	395	GTCGTCCCGAGACCGGCAGGCCTTGGCCCAAATGTCCAGATGGTGAGAGA					PREDICTED: Rattus norvegicus LOC498862 (LOC498862), mRNA.					
Rattus norvegicus	RefSeq	GI_62643799-S	ILMN_65581	UBE2Q_PREDICTED	XM_215612.4	XM_215612.4		295252	109465089	XM_215612.4	Ube2q_predicted	XP_215612.4	ILMN_1349847	0002760487	S	3132	CCTACTTGATGCTGCTCTAATTCTGCCTACACCCACCAGATTAGGGGTGC	2	+	181988843-181988892	2q34	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2Q (putative) (predicted) (Ube2q_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653981-S	ILMN_57136	LOC315728	XM_236312.3	XM_236312.3		315728	62653981	XM_236312.3	LOC315728	XP_236312.3	ILMN_1373605	0001740059	S	4362	CCCTGGGCATGCACTCAGACACACATGAGCAATGACAGGGACAGTGACAA				8q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230114P05 (LOC315728), mRNA.					
Rattus norvegicus	RefSeq	GI_62638848-S	ILMN_287891	RGD1310536_PREDICTED	XM_001069506.1	XM_001069506.1		365176	109461099	XM_001069506.1	RGD1310536_predicted	XP_001069506.1	ILMN_1363098	0001090091	S	1074	TGTGGTGAGGGCTTCGTGCAGGGTGCCGCACTTCGGAGACACAAGAAGAT				1q12	PREDICTED: Rattus norvegicus similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20 (predicted) (RGD1310536_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644862-S	ILMN_52614	NUP188	XM_345335.3	XM_345335.3		366016	109467989	XM_345335.3	Nup188	XP_345336.2	ILMN_1354669	0000630671	S	5411	TAGCTGAAGAGGTCAACAGCACGGGCAGAGGACAAAGGGTCTGGGTGCTC	3	+	9387965-9388014	3p12	PREDICTED: Rattus norvegicus nucleoporin 188 (Nup188), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656195-S	ILMN_53586	LOC497921	XM_573107.1	XM_573107.1		497921	62656195	XM_573107.1	LOC497921	XP_573107.1	ILMN_1367001	0005700563	S	1042	CCTGAGGACAAACTGGAACAGAGTCGCAGAGCAGGTTCGAGCTGGGCTAA				10q22	PREDICTED: Rattus norvegicus similar to novel protein (LOC497921), mRNA.					
Rattus norvegicus	RefSeq	GI_62643069-S	ILMN_263920	CDH9_PREDICTED	XM_001058100.1	XM_001058100.1		29163	109466191	XM_001058100.1	Cdh9_predicted	XP_001058100.1	ILMN_1351026	0003850072	S	2330	CGGAGATGTATGGGGGTGATGACAGTGACCGGGACTGAGTCCTGTATGAC				2q21	PREDICTED: Rattus norvegicus cadherin 9 (predicted) (Cdh9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654720-S	ILMN_48964	MRPL14_PREDICTED	XM_217350.4	XM_217350.4		301250	109485806	XM_217350.4	Mrpl14_predicted	XP_217350.2	ILMN_1352541	0004760605	S	565	TCCACGTCTATAACAAGAGCGGGGTGGGCAAGGTGGGTGACCAGATCCTG	9	-	10902128-10902177	9q12	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L14 (predicted) (Mrpl14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645401-S	ILMN_263287	NYW1	XM_001069366.1	XM_001069366.1		59319	109470254	XM_001069366.1	Nyw1	XP_001069366.1	ILMN_1355719	0002900278	S	5026	GGTTGGAGGGAGGAGATTCCAGGTCAGAATGTGAGGTCTTGGTCTGTGAC				3q24	PREDICTED: Rattus norvegicus ischemia related factor NYW-1 (Nyw1), mRNA.					
Rattus norvegicus	RefSeq	GI_61889106-S	ILMN_59274	RPH3AL	NM_133591.2	NM_133591.2		171123	61889106	NM_133591.2	Rph3al	NP_598275.1	ILMN_1365776	0001340577	S	1658	TTCTTCAGTGGAAAACAAAGCTCCCACCCTGCCTCATGCTCGCTGGCCCA	10	-	63180113-63180162	10q24	Rattus norvegicus rabphilin 3A-like (without C2 domains) (Rph3al), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis [goid 17158] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45744] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence IPI]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Noc2	Noc2
Rattus norvegicus	RefSeq	GI_6981533-S	ILMN_283731	SHOX2	NM_013028.1	NM_013028.1		25546	6981533	NM_013028.1	Shox2	NP_037160.1	ILMN_1360521	0006900551	S	1498	CCATGTTTGGAAGAGCAAGAAGAGGGAAGACAGTGTGGAAACGAGGAGGG	2	-	156881059-156881108	2q31	Rattus norvegicus short stature homeobox 2 (Shox2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of the digestive tract are generated and organized during embryonic development. The digestive tract is the tube extending from the mouth to the anus, including the pharynx, esophagus, stomach, and intestines [goid 48557] [evidence ISS]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638408-I	ILMN_48174	RNF146_PREDICTED	XM_574289.1	XM_574289.1		308051	62638408	XM_574289.1	Rnf146_predicted	XP_574289.1	ILMN_1376209	0002630132	S	22	CTCCGAAGCGGAGGAGAAAAGACTGCGAGGAGGCTGCGGCTGTGACCGAG				1p11	PREDICTED: Rattus norvegicus ring finger protein 146 (predicted) (Rnf146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661260	ILMN_48307	SAMD4_PREDICTED	XM_223945.4	XM_223945.4		305826	109501523	XM_223945.4	Samd4_predicted	XP_223945.3	ILMN_1649741	0000630592	S	2391	AGAAACTGAAGATGACAGTGACCGCGCTGGCCGTGAAATGGACTGCTGCG	15	+	22951788-22951789:22951790-22951837	15p14	PREDICTED: Rattus norvegicus sterile alpha motif domain containing 4 (predicted) (Samd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661029-S	ILMN_265428	DNAJC9_PREDICTED	XM_001064040.1	XM_001064040.1		364240	109502119	XM_001064040.1	Dnajc9_predicted	XP_001064040.1	ILMN_1371966	0006860411	S	1036	GGGTTGTGGTGTGATGGTTGGGAGGGTGGGTTTGACATTTGCTTCCGTGG				15p16	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 9 (predicted) (Dnajc9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31343520-S	ILMN_300594	PSIP1	NM_175765.2	NM_175765.2		313323	31343520	NM_175765.2	Psip1	NP_786941.1	ILMN_1352860	0004210671	S	2214	GCGTGCCTCTTTGTAATAATGTGTAGTATGACAGCTAGATGCCTATTGGG	5	-	102305226-102305275	5q31	Rattus norvegicus PC4 and SFRS1 interacting protein 1 (Psip1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Ledgf; Psip2	Ledgf; Psip2
Rattus norvegicus	RefSeq	GI_62650131-S	ILMN_264440	LOC503000	XM_001078135.1	XM_001078135.1		503000	109475852	XM_001078135.1	LOC503000	XP_001078135.1	ILMN_1354721	0002360324	S	276	GCAGAAGGTCCGCGTGCTGCTCATGCTGAGGAAGATGGGGTCAAATCTGA	5	+	166628602-166628647:166629249-166629252	5q36	PREDICTED: Rattus norvegicus similar to beta-catenin-interacting protein ICAT (LOC503000), mRNA.			Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9507244-S	ILMN_295335	YWHAG	NM_019376.1	NM_019376.1		56010	9507244	NM_019376.1	Ywhag	NP_062249.1	ILMN_1365061	0000630136	S	3203	CGCCGCGGAGCTTCTCTGAACGACCTCTGTGCTTTCTTGTCATGTTATGC	12	+	21887824-21887873	12q12	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide (Ywhag), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence ISS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with protein kinase C [goid 5080] [evidence ISS]; Interacting selectively with protein kinase C [goid 5080] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Modulates the activity of an enzyme [goid 30234] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62659826-S	ILMN_287511	RGD1562462_PREDICTED	XM_001057207.1	XM_001057207.1		289245	109499087	XM_001057207.1	RGD1562462_predicted	XP_001057207.1	ILMN_1373800	0000060601	S	2451	GCAGGTCATCAAGAATAGGAGGAGAACCAGTAGATCTCCCGATCCCTATG				13q24	PREDICTED: Rattus norvegicus similar to Ifi204 protein (predicted) (RGD1562462_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645123-S	ILMN_65584	LOC499799	XM_575136.1	XM_575136.1		499799	62645123	XM_575136.1	LOC499799	XP_575136.1	ILMN_1351627	0001400193	S	77	GGGCAGCATCTCGAACATATGGCCACTGGAAAACATTTCCTGAACAAAAC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499799), mRNA.					
Rattus norvegicus	RefSeq	GI_62644060-S	ILMN_57200	LOC497764	XM_579499.1	XM_579499.1		497764	62644060	XM_579499.1	LOC497764	XP_579499.1	ILMN_1358086	0001190402	S	3897	CCACACTGTCACTGGGCACAGACCACTCAGTCTGCTTCTCATAGTCACCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031027 (LOC497764), mRNA.					
Rattus norvegicus	RefSeq	GI_6978702-S	ILMN_272536	CPT1B	NM_013200.1	NM_013200.1		25756	6978702	NM_013200.1	Cpt1b	NP_037332.1	ILMN_1363541	0006760040	S	2509	CAGGCCCGGTCGAGGTGGGATTGGAGTGGTGAGGGAACTTTGATCTTTTT	7	-	127737399-127737448	7q34	Rattus norvegicus carnitine palmitoyltransferase 1b, muscle (Cpt1b), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]	The transfer of acyl groups to and from acyl-CoA molecules to form O-acylcarnitine, which can exchange across the mitochondrial inner membrane with unacylated carnitine [goid 6853] [evidence ISS]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence IDA]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]	Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	M-CPTI; MGC93637; CPT-IB	M-CPTI; MGC93637; CPT-IB
Rattus norvegicus	RefSeq	GI_13592126-S	ILMN_60428	PAX8	NM_031141.2	NM_031141.2		81819	77020243	NM_031141.2	Pax8	NP_112403.2	ILMN_1351489	0002480075	S	1539	GTTGTCATGGGGACAGTGGGAACAACCAGGCAACAGGAGGACTTGGCCTG	3	-	2672375-2672424	3p13	Rattus norvegicus paired box gene 8 (Pax8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IMP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IMP]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	MGC93376	MGC93376
Rattus norvegicus	RefSeq	GI_62651897-S	ILMN_65160	SLC41A2_PREDICTED	XM_343191.3	XM_343191.3		362861	109480370	XM_343191.3	Slc41a2_predicted	XP_343192.3	ILMN_1350462	0001660725	S	1879	TATCGGAGACCGAGATGGCGACGTTGGAGACTAACGGACCGACAAGCTGC	7	+	22666981-22667014:22667015-22667030	7q13	PREDICTED: Rattus norvegicus solute carrier family 41, member 2 (predicted) (Slc41a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660857-S	ILMN_295429	UGP2	NM_001024743.1	NM_001024743.1		289827	67078525	NM_001024743.1	Ugp2	NP_001019914.1	ILMN_1358829	0006660402	S	1711	TCCCCCCAGGAGCAGTGTTAGAGAACAAGATTGTATCTGGGAACCTTCGG	14	-	102073048-102073061:102073062-102073097	14q22	Rattus norvegicus UDP-glucose pyrophosphorylase 2 (Ugp2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UTP + alpha-D-glucose 1-phosphate = diphosphate + UDP-glucose [goid 3983] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644125-S	ILMN_281495	RSBN1_PREDICTED	XM_001065582.1	XM_001065582.1		310749	109467322	XM_001065582.1	Rsbn1_predicted	XP_001065582.1	ILMN_1369131	0003360711	S	6464	TTTGCCTGGCGGACTATTTGCGTTTGTGTGGCCTTAGTTTGTTTATTGAC				2q34	PREDICTED: Rattus norvegicus rosbin, round spermatid basic protein 1 (predicted) (Rsbn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656807-S	ILMN_69611	NEK8_PREDICTED	XM_220639.3	XM_220639.3		287473	62656807	XM_220639.3	Nek8_predicted	XP_220639.3	ILMN_1374126	0005860671	S	2012	GGCTGTTCGATTTACAGCTCAGATTACCCATCCAAAGCACCCCCACCCCG				10q25	PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)- related kinase 8 (predicted) (Nek8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577330-S	ILMN_299096	OLR419	NM_001000968.1	NM_001000968.1		405321	47577330	NM_001000968.1	Olr419	NP_001000968.1	ILMN_1371883	0000110347	S	565	TGTTCCAACATTTTTGCCAACCAGTGTGTGCTGCTCTACTGGGGAGGAGC	3	+	16449995-16450044	3q11	Rattus norvegicus olfactory receptor 419 (Olr419), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr419	Olr419
Rattus norvegicus	RefSeq	GI_58865423-A	ILMN_268462	ATP6V0D1	NM_001011927.1	NM_001011927.1		291969	58865423	NM_001011927.1	Atp6v0d1	NP_001011927.1	ILMN_1376638	0007100619	S	1261	CCCCTCGGGACTGCTCATAGGTCTAAAAAGAGTTAGGCACCTTTCCCCTG	19	-	35342315-35342364	19q11	Rattus norvegicus ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 (Atp6v0d1), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642191-S	ILMN_300628	IFIT2	NM_001024753.1	NM_001024753.1		294091	67078505	NM_001024753.1	Ifit2	NP_001019924.1	ILMN_1364134	0003870129	S	1460	AGGCGGCTTTCTAGAGATGAATCTGATCCTGAGGCCTTGCGCATCTTGGC	1	+	238563843-238563892	1q52	Rattus norvegicus interferon-induced protein with tetratricopeptide repeats 2 (Ifit2), mRNA.	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655131-S	ILMN_266175	LOC689253	XM_001070133.1	XM_001070133.1		689253	109486149	XM_001070133.1	LOC689253	XP_001070133.1	ILMN_1365170	0001340050	S	4369	GAAGATGGCAAGTTGATTGTAGTGGGTGTCGGCAAACCAGCCGAGATGCG	9	+	58885879-58885923:58887879-58887883	9q31	PREDICTED: Rattus norvegicus similar to neurobeachin-like 1 (LOC689253), mRNA.					
Rattus norvegicus	RefSeq	GI_61556938-S	ILMN_279436	SLC38A6	NM_001013099.1	NM_001013099.1		299139	61556938	NM_001013099.1	Slc38a6	NP_001013117.1	ILMN_1373638	0002190400	S	2248	TGCTGCTGTTGCCTGCCAAGGGCTGGGGTTAGAAACTGGGCCACCATCCT	6	+	95778737-95778756	6q24	Rattus norvegicus solute carrier family 38, member 6 (Slc38a6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Snat6	Snat6
Rattus norvegicus	RefSeq	GI_40538881-S	ILMN_51399	SEC61A1	NM_199256.1	NM_199256.1		80843	40538881	NM_199256.1	Sec61a1	NP_954865.1	ILMN_1367801	0005700520	S	1546	ACCAGGGTGAGGGCACAGGCTCCAGAACTGCCCCGGAAGGTGCTCTTACT				4q34	Rattus norvegicus SEC61, alpha subunit (S. cerevisiae) (Sec61a1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IEA]; Interacting selectively with any part of a ribosome [goid 43022] [evidence ISS]	Sec61a	Sec61a
Rattus norvegicus	RefSeq	GI_62664857-S	ILMN_65194	LOC364937	XM_577643.1	XM_577643.1		364937	62664857	XM_577643.1	LOC364937	XP_577643.1	ILMN_1360172	0001190273	S	752	GGAACCCCAAGGCCAGAATGGGCTAGAGAGGGAGTTGAAGGTTGGCTCAG				19p13	PREDICTED: Rattus norvegicus similar to nuclease sensitive element binding protein 1 (LOC364937), mRNA.					
Rattus norvegicus	RefSeq	GI_21489966	ILMN_263833	LRRC15	NM_145083.1	NM_145083.1		246296	21489966	NM_145083.1	Lrrc15	NP_659551.1	ILMN_1650474	0003840364	S	1461	CCCAGATACGCCCAGCTATCCCGACACCACATCTGTTTCCTCTACCACGG	11	+	72378550-72378599	11q22	Rattus norvegicus leucine rich repeat containing 15 (Lrrc15), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Lib	Lib
Rattus norvegicus	RefSeq	GI_62658269-S	ILMN_59555	PRKDC_PREDICTED	XM_341020.3	XM_341020.3		360748	109493691	XM_341020.3	Prkdc_predicted	XP_341021.3	ILMN_1369977	0002190128	S	12233	GTAGCTCGAGGCAACAAAGACTACAACATTCGTGCACAAGAGCCAGAGAG	11	-	86951865-86951914	11q23	PREDICTED: Rattus norvegicus protein kinase, DNA activated, catalytic polypeptide (predicted) (Prkdc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645225-S	ILMN_285046	METAPL1_PREDICTED	XM_001059115.1	XM_001059115.1		311748	109470035	XM_001059115.1	Metapl1_predicted	XP_001059115.1	ILMN_1354287	0002350128	S	928	CTAGACAACCGAAGGTCCGCACAGTTCGAGCACACAGTCCTCATCACGCC				3q21	PREDICTED: Rattus norvegicus methionine aminopeptidase-like 1 (predicted) (Metapl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705512-A	ILMN_278583	TMEM14C	NM_134395.1	NM_134395.1		171432	19705512	NM_134395.1	Tmem14c	NP_599222.1	ILMN_1376821	0002120053	S	212	GGGCCAGTTGCATCCGCACCCAGTGCTTGTACCTTGAACTCATTTCTTCC	17	-	29707243-29707292	17p12	Rattus norvegicus transmembrane protein 14C (Tmem14c), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_18426859-S	ILMN_294731	LEF1	NM_130429.1	NM_130429.1		161452	18426859	NM_130429.1	Lef1	NP_569113.1	ILMN_1369385	0006110040	S	790	CCTCAGGTCAAACAGGAGCACCCCCACACGGACAGCGACCTAATGCACGT	2	+	228661719-228661768	2q43	Rattus norvegicus lymphoid enhancer binding factor 1 (Lef1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus [goid 21542] [evidence ISS]; The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus [goid 21542] [evidence IEA]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process that gives rise to the paraxial mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 48341] [evidence ISS]; The process that gives rise to the paraxial mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 48341] [evidence IEA]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of causing local conformational micropolymorphism of DNA in which the original B-DNA structure is only distorted but not extensively modified [goid 8301] [evidence ISS]; The function of causing local conformational micropolymorphism of DNA in which the original B-DNA structure is only distorted but not extensively modified [goid 8301] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577498-S	ILMN_302421	OLR488	NM_001000308.1	NM_001000308.1		295754	47577498	NM_001000308.1	Olr488	NP_001000308.1	ILMN_1354446	0002030215	S	696	AGGTAGGAAAAAGGCTCTCTCCACTTGCGGTTCCCATCTGACAGTGGTGG	3	-	69432242-69432291	3q24	Rattus norvegicus olfactory receptor 488 (Olr488), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr488; ratchr3-69329359-69328433_ORF	Olr488; ratchr3-69329359-69328433_ORF
Rattus norvegicus	RefSeq	GI_56605747-S	ILMN_264243	EIF4A2	NM_001008335.1	NM_001008335.1		303831	56605747	NM_001008335.1	Eif4a2	NP_001008336.1	ILMN_1372755	0007040068	S	1764	GCTAAGCCTCAGCAAGCAATCATCCTAGGTAGGGTTAACAACCCCCCAGT	11	-	79950658-79950707	11q23	Rattus norvegicus eukaryotic translation initiation factor 4A2 (Eif4a2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94588	MGC94588
Rattus norvegicus	RefSeq	GI_62643165-S	ILMN_276643	RGD1561219_PREDICTED	XR_009538.1	XR_009538.1		499571	109466330	XR_009538.1	RGD1561219_predicted		ILMN_1354672	0005130452	S	1037	CTCCCGAATGTGTCTTTAGATAGCCCTGTCCTGGTGGTATTTTTCATAGC				2q23	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1561219_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648506-S	ILMN_49929	LOC497800	XM_579398.1	XM_579398.1		497800	62648506	XM_579398.1	LOC497800	XP_579398.1	ILMN_1365308	0000060139	S	4226	GAAGGATTTGCTTGCTATGTCTGAGACCTTGAGATCAACCCTACCTGGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017167 (LOC497800), mRNA.					
Rattus norvegicus	RefSeq	GI_62666496	ILMN_56253	ELK1	XM_234523.3	XM_234523.3		314436	62666496	XM_234523.3	Elk1	XP_234523.2	ILMN_1651026	0001660019	S	1647	TCTTCGCCAGCCTTCCAGTGGCCGCCCTTACACGTCTCCTACTTCAGTGG				Xq12	PREDICTED: Rattus norvegicus ELK1, member of ETS oncogene family (Elk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657410-S	ILMN_62340	LOC363701	XM_577140.1	XM_577140.1		363701	62657410	XM_577140.1	LOC363701	XP_577140.1	ILMN_1365140	0000670520	S	514	CCTCGGTGAGGAAACAATATCCCTGGAGCCTTTTTATTGGGGAGGAGGGG				10q32.2	PREDICTED: Rattus norvegicus similar to Immunoglobulin superfamily, member 7 (LOC363701), mRNA.					
Rattus norvegicus	RefSeq	GI_62651483-S	ILMN_66418	LOC503063	XM_578584.1	XM_578584.1		503063	62651483	XM_578584.1	LOC503063	XP_578584.1	ILMN_1374417	0006860040	S	1054	GAAACACAGTGAGGGAAGTCCACTCATCAGCAGGGACACCTCCCAAGAGC				6q32	PREDICTED: Rattus norvegicus similar to Igh-1a_predicted protein (LOC503063), mRNA.					
Rattus norvegicus	RefSeq	GI_62644270-S	ILMN_67481	LOC295419	XM_215688.3	XM_215688.3		295419	62644270	XM_215688.3	LOC295419	XP_215688.2	ILMN_1359734	0005360037	S	2136	CGGATTCCCAAGAAACAGAGGAAAAAGACCATTGTGGAAGAACTGCTGGC					PREDICTED: Rattus norvegicus similar to expressed sequence AA408582 (predicted) (LOC295419), mRNA.					
Rattus norvegicus	RefSeq	GI_40538863-S	ILMN_266519	CA3	NM_019292.3	NM_019292.3		54232	40538863	NM_019292.3	Ca3	NP_062165.2	ILMN_1368331	0002320403	S	1605	CCTGAGACAGGAAGGAGGGAATGCCAGCACTGAAGCTGAGAGTTTGTACT	2	-	88105909-88105958	2q23	Rattus norvegicus carbonic anhydrase 3 (Ca3), mRNA.				Car3	Car3
Rattus norvegicus	RefSeq	GI_62663582-S	ILMN_271320	HIST1H1A_PREDICTED	XM_001071190.1	XM_001071190.1		291145	109505785	XM_001071190.1	Hist1h1a_predicted	XP_001071190.1	ILMN_1372308	0002810180	S	614	CCTAAGGCTGCCAAGGTGAAGGTGACAAAGCCAAAGACTCCAGCTAAGCC				17p11	PREDICTED: Rattus norvegicus histone 1, H1a (predicted) (Hist1h1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651807-S	ILMN_60712	LOC500801	XM_576190.1	XM_576190.1		500801	62651807	XM_576190.1	LOC500801	XP_576190.1	ILMN_1370527	0006200373	S	1954	GTATGGGGAGGTGGCTCCTACTGGTCCCCGGGGGCAGCACTGACTTCTTT				7q11	PREDICTED: Rattus norvegicus similar to Cytochrome P450 4F6 (CYPIVF6) (LOC500801), mRNA.					
Rattus norvegicus	RefSeq	GI_62717950-S	ILMN_57295	LOC503311	XM_578846.1	XM_578846.1		503311	62717950	XM_578846.1	LOC503311	XP_578846.1	ILMN_2039578	0006550328	S	5	AGAAGAGGATGTCTCTGAGGAGGATGAGCGCACCATCCTTCCAGAAGCGG					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC503311), mRNA.					
Rattus norvegicus	RefSeq	GI_62665781-S	ILMN_65805	DNAH8	XM_228058.4	XM_228058.4		207117	109509250	XM_228058.4	Dnah8	XP_228058.4	ILMN_1359523	0000070164	S	13942	TGGGACAGGCGGAACGGGAAGCTCACAGAATCCACCCCGAAGGTTCTCTT	20	+	9199668-9199717	20p12	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 8 (Dnah8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659624-S	ILMN_59826	DPT_PREDICTED	XM_213925.3	XM_213925.3		289178	109498105	XM_213925.3	Dpt_predicted	XP_213925.1	ILMN_1374030	0005860279	S	1702	CTGGGTAGACAGGAGTGGCAAGGGAAGAAGGGATCTTGGGTTATCCACAG	13	+	80591097-80591146	13q23	PREDICTED: Rattus norvegicus dermatopontin (predicted) (Dpt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718550-S	ILMN_67749	LOC503362	XM_578901.1	XM_578901.1		503362	62718550	XM_578901.1	LOC503362	XP_578901.1	ILMN_1365987	0000730736	S	51	CTAACTAATGTCCTGGGCTGCATTAGCACCACACTGACTGGCTCTGCGTG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503362), mRNA.					
Rattus norvegicus	RefSeq	GI_62661916-S	ILMN_68236	LOC364377	XM_344400.2	XM_344400.2		364377	62661916	XM_344400.2	LOC364377	XP_344401.2	ILMN_1357188	0001400164	S	350	CAGCCTGAGAGACGCTGCTGTGTACCACTGTATCCTGAGAGTAGCACGCT					PREDICTED: Rattus norvegicus similar to T cell receptor V-alpha J-alpha (LOC364377), mRNA.					
Rattus norvegicus	RefSeq	GI_62667062-S	ILMN_64408	LOC501590	XM_580214.1	XM_580214.1		501590	62667062	XM_580214.1	LOC501590	XP_580214.1	ILMN_1369081	0001340338	S	1037	GAATCTCAGGGGGAGTCTGATTCTGAGGCCAAGGGGGAACCCGAGCAAGA				Xq31	PREDICTED: Rattus norvegicus LOC501590 (LOC501590), mRNA.					
Rattus norvegicus	RefSeq	GI_62653581-S	ILMN_289105	VPS11_PREDICTED	XM_001061508.1	XM_001061508.1		315600	109484561	XM_001061508.1	Vps11_predicted	XP_001061508.1	ILMN_1362258	0006180133	S	3049	CCAGTGAGGAGGGCACCTCGGCAACCTCTCTGTGGACAATAGCTGCTTTA				8q22	PREDICTED: Rattus norvegicus vacuolar protein sorting 11 (yeast) (predicted) (Vps11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644571-S	ILMN_285314	LOC688159	XM_001081340.1	XM_001081340.1		688159	109517867	XM_001081340.1	LOC688159	XP_001081340.1	ILMN_1349997	0001850500	S	114	GTATGAAGGGGACTTTCCCAGGGCTGCGGACCTTCCAGAGAAGACTGAGG					PREDICTED: Rattus norvegicus similar to mutS homolog 4 (LOC688159), mRNA.					
Rattus norvegicus	RefSeq	GI_27666751-S	ILMN_277700	RGD1559590_PREDICTED	XM_001072259.1	XM_001072259.1		303889	109494493	XM_001072259.1	RGD1559590_predicted	XP_001072259.1	ILMN_2039613	0001260113	S	278	CCACTCCTTCAGCCGATGCCCCTATGTTTGTGATGAGTGTGAACCACGAG				11q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1559590_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667575-S	ILMN_69819	LOC367945	XM_346363.2	XM_346363.2		367945	62667575	XM_346363.2	LOC367945	XP_346364.2	ILMN_1358474	0004540292	S	4	CTGCCAAAGGCACAGCTAGTATGCCAAGGTACACAGTTACTATGCCAAGG					PREDICTED: Rattus norvegicus similar to flocculin-like protein (LOC367945), mRNA.					
Rattus norvegicus	RefSeq	GI_62660992-S	ILMN_49462	LOC501943	XM_577369.1	XM_577369.1		501943	62660992	XM_577369.1	LOC501943	XP_577369.1	ILMN_1363373	0006510072	S	965	CCACTCGAAGTCGCATGGACGAGCTACCAAGAGGAGACAATACCCTTCAG					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC501943), mRNA.					
Rattus norvegicus	RefSeq	GI_62638241-S	ILMN_291165	VTA1	NM_001025640.1	NM_001025640.1		292640	71043753	NM_001025640.1	Vta1	NP_001020811.1	ILMN_1368882	0003450519	S	917	AGACCTCAGTTCCCCGAGTAAGACAGTGGCTCCTGTTGTCGTCAGCTGCC	1	-	9512500-9512549	1p13	Rattus norvegicus Vps20-associated 1 homolog (S. cerevisiae) (Vta1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112826	MGC112826
Rattus norvegicus	RefSeq	GI_8394052-S	ILMN_291950	PRPS1	NM_017243.1	NM_017243.1		29562	8394052	NM_017243.1	Prps1	NP_058939.1	ILMN_1356859	0001770594	S	1540	CCTGTACGGCAGGGGCGGGTAGCTCAATGCAGTAATCAATTTTTGGGAGG	X	+	128271451-128271500	Xq35	Rattus norvegicus phosphoribosyl pyrophosphate synthetase 1 (Prps1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways resulting in the formation of AMP, adenosine monophosphate [goid 6167] [evidence IDA]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9156] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IDA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]; The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar [goid 19693] [evidence IDA]; The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar [goid 19693] [evidence IDA]; The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells [goid 44249] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IEA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_16758555-S	ILMN_55458	CASP11	NM_053736.1	NM_053736.1		114555	16758555	NM_053736.1	Casp11	NP_446188.1	ILMN_1368144	0002640152	S	797	GAGGTGGAAACTCTGGAGAAGTGTGGATCAGAGAGTCTTCAGGAGCCCAC				8q11	Rattus norvegicus caspase 11 (Casp11), mRNA.				MGC124949; Casp4	MGC124949; Casp4
Rattus norvegicus	RefSeq	GI_34869653	ILMN_48892	RGD1304610_PREDICTED	XM_223939.3	XM_223939.3		305831	109501537	XM_223939.3	RGD1304610_predicted	XP_223939.2	ILMN_1651072	0006100450	S	1275	CAGATGTGAGTGGAGATGAGCGTGTGAGCGATGAGGAGACTGACCTGGGC	15	-	23513742-23513791	15p14	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 14, ERATO Doi 436, expressed (predicted) (RGD1304610_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653350	ILMN_266474	RP9H_PREDICTED	XM_001074462.1	XM_001074462.1		363032	109484298	XM_001074462.1	Rp9h_predicted	XP_001074462.1	ILMN_1650578	0004810044	S	783	GTGGCATCCTCAGCACCATCCACAGACCAAAGGACAGAGCCACCGAAAGC				8q13	PREDICTED: Rattus norvegicus retinitis pigmentosa 9 homolog (human) (predicted) (Rp9h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342640-S	ILMN_300499	SMUG1	NM_177934.2	NM_177934.2		315344	31342640	NM_177934.2	Smug1	NP_808795.1	ILMN_1371658	0003060301	S	553	AAGAGCACCCTAAGCGACCAGTGTTGGGACTGGAGTGCCCGCAGTCAGAG	7	-	142064859-142064908	7q36	Rattus norvegicus single-strand-selective monofunctional uracil-DNA glycosylase 1 (Smug1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IDA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence ISS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The disruption of the bond between the sugar in the backbone and the C or T base, causing the base to be removed and leaving a depyrimidinated sugar [goid 45008] [evidence ISS]	Catalysis of the removal of oxidized bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site [goid 702] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence TAS]; Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine [goid 4844] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases present in single-stranded DNA [goid 17065] [evidence ISS]; Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases present in single-stranded DNA [goid 17065] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62655040	ILMN_265495	OBFC2A	NM_001014216.1	NM_001014216.1		363227	62079158	NM_001014216.1	Obfc2a	NP_001014238.1	ILMN_1650056	0005050546	S	668	TGGCAGAAGCAATGGCCCAGGACCCATCAGTCCACAGCTACCAGGAGAAC	9	+	47200256-47200305	9q22	Rattus norvegicus oligonucleotide/oligosaccharide-binding fold containing 2A (Obfc2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	Obfc2a; MGC108887	Obfc2a; MGC108887
Rattus norvegicus	RefSeq	GI_62652733-S	ILMN_271884	DDX17	XM_001076554.1	XM_001076554.1		315133	109482568	XM_001076554.1	Ddx17	XP_001076554.1	ILMN_1355095	0000940368	S	2131	GCCTTTGGGGCGCAAGCAGGCCAATACACCTATGCTCAAGGCACCTATGG				7q34	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (Ddx17), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393480-S	ILMN_293449	GRIK1	NM_017241.1	NM_017241.1		29559	8393480	NM_017241.1	Grik1	NP_058937.1	ILMN_1354440	0003130458	S	3017	CAGAGGACTATGTCTTTATCCATAACCCCAGTCGTGGACAGAGGGGGAAG	11	-	27704036-27704085	11q11	Rattus norvegicus glutamate receptor, ionotropic, kainate 1 (Grik1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [pmid 10627597] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of gamma-aminobutyric acid [goid 14054] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IDA]; Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32230] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32230] [evidence IDA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity [goid 48172] [evidence IDA]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence IDA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [pmid 12533604] [evidence TAS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [pmid 12533604] [evidence TAS]	Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA];  [goid 15277] [evidence ISS];  [goid 15277] [evidence ISS];  [goid 15277] [evidence IDA];  [goid 15277] [evidence ISS]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IDA]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IDA]; Catalysis of the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion [goid 22843] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]	GluR5; GluR-5	GluR5; GluR-5
Rattus norvegicus	RefSeq	GI_62640895-S	ILMN_277285	RGD1565584_PREDICTED	XM_001062098.1	XM_001062098.1		293112	109462405	XM_001062098.1	RGD1565584_predicted	XP_001062098.1	ILMN_1366571	0004760100	S	4218	GGCAGTTTGGAGAATTAGGAGTCTCAGCAGTGGCAAGATTAGAGTGTCCT				1q32	PREDICTED: Rattus norvegicus similar to tyrosine kinase-associated leucine zipper protein LAZipII (predicted) (RGD1565584_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_7110598-S	ILMN_265770	GCK	NM_012565.1	NM_012565.1		24385	7110598	NM_012565.1	Gck	NP_036697.1	ILMN_1360645	0001050048	S	2069	GATGAACCCTCCCAGGAGATGCCAGAGGTTAGAGCCCCAGAGTCCTTGCT	14	-	86572725-86572774	14q21	Rattus norvegicus glucokinase (Gck), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence TAS]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence ISS]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence IMP]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH [goid 6739] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A series of molecular signals in which an ion or small molecule is formed or released into the cytosol, thereby helping relay the signal within the cell [goid 19932] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43266] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of gluconeogenesis [goid 45721] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of gluconeogenesis [goid 45721] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 45725] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 45725] [evidence ISS]; The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y [goid 46835] [evidence ISS]; The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y [goid 46835] [evidence IDA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 51156] [evidence IDA]; The series of events in which a glucose stimulus is received by a cell and converted into a molecular signal [goid 51594] [evidence IEA]; The series of events in which a glucose stimulus is received by a cell and converted into a molecular signal [goid 51594] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of gluconeogenesis [goid 45721] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 45725] [evidence IEA]; The series of events in which a glucose stimulus is received by a cell and converted into a molecular signal [goid 51594] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of gluconeogenesis [goid 45721] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 45725] [evidence ISS]; The series of events in which a glucose stimulus is received by a cell and converted into a molecular signal [goid 51594] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence IDA]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence IEA]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence ISS]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence IDA]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IEA]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IDA]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate [goid 4340] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RNGK2; GLUKA	RNGK2; GLUKA
Rattus norvegicus	RefSeq	GI_62643080-S	ILMN_53116	ZFR	XM_345169.3	XM_345169.3		365703	109464512	XM_345169.3	Zfr	XP_345170.3	ILMN_1356617	0003450315	S	3307	GGAAACGAAGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGG	2	+	61639890-61639939	2q16	PREDICTED: Rattus norvegicus zinc finger RNA binding protein (Zfr), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643716-S	ILMN_292616	RGD1564674_PREDICTED	XR_008860.1	XR_008860.1		499649	109466980	XR_008860.1	RGD1564674_predicted		ILMN_1364169	0006860167	S	582	CACTGCCTGCAGAGCCGAAGGAAAACCTGATGTAGGGAAAATGGGGGTGG				2q34	PREDICTED: Rattus norvegicus similar to high mobility group protein (predicted) (RGD1564674_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928715-S	ILMN_284463	SERPINA3N	NM_031531.1	NM_031531.1		24795	13928715	NM_031531.1	Serpina3n	NP_113719.1	ILMN_1372782	0001850164	S	1711	TGTGCACGATTACCGGCCAACCCACATGGACCAAGAAGAACACTTGCTGG	6	+	128468963-128469012	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A, member 3N (Serpina3n), mRNA.	A generic term for parts of cells prepared by disruptive biochemical techniques [goid 267] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Spin2c; MGC93363; CPi-26; SPI3; Spi-2.2; Spin3	Spin2c; MGC93363; CPi-26; SPI3; Spi-2.2; Spin3
Rattus norvegicus	RefSeq	GI_62655226-S	ILMN_50719	SLC23A3_PREDICTED	XM_346061.3	XM_346061.3		367298	109486162	XM_346061.3	Slc23a3_predicted	XP_346062.2	ILMN_1354753	0005890315	S	1787	CAGGAGAGACAGCCGACTTGTTGCCTAACTCAGGGGAGTCAAGCTCTCCG	9	-	74409261-74409310	9q33	PREDICTED: Rattus norvegicus solute carrier family 23 (nucleobase transporters), member 3 (predicted) (Slc23a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659116-S	ILMN_283998	LOC687424	XM_001076559.1	XM_001076559.1		687424	109497267	XM_001076559.1	LOC687424	XP_001076559.1	ILMN_1373355	0004570215	S	274	TGCGTGGCGGACCGAAGGAACGGGAACGAAGCAGGGAAAGGCCGAACCTA					PREDICTED: Rattus norvegicus similar to Protein deltex-1 (Deltex-1) (Deltex1) (mDTX1) (FXI-T1), transcript variant 2 (LOC687424), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659120-S	ILMN_283998	LOC687424	XM_001076559.1	XM_001076559.1		687424	109497267	XM_001076559.1	LOC687424	XP_001076559.1	ILMN_1362518	0003170113	S	775	GCCACCGTGTGCCACCACATCGAGAATGTTCTTAAGGAGGATGCCCGGGG					PREDICTED: Rattus norvegicus similar to Protein deltex-1 (Deltex-1) (Deltex1) (mDTX1) (FXI-T1), transcript variant 2 (LOC687424), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34872674-S	ILMN_283998	LOC687424	XM_001076559.1	XM_001076559.1		687424	109497267	XM_001076559.1	LOC687424	XP_001076559.1	ILMN_1372758	0004200458	S	2318	GATTGCTCATCACCGCCTGGGAGCGCAGACTCATCTTCACTATTGGAACA					PREDICTED: Rattus norvegicus similar to Protein deltex-1 (Deltex-1) (Deltex1) (mDTX1) (FXI-T1), transcript variant 2 (LOC687424), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647743-S	ILMN_58478	LOC500244	XM_575594.1	XM_575594.1		500244	62647743	XM_575594.1	LOC500244	XP_575594.1	ILMN_1352366	0000430347	S	3288	CCCATGAACTCTGGGGGCCATCCTAATGACAGAAACAGAGGACTGCAGCC				4q34	PREDICTED: Rattus norvegicus similar to AP2 associated kinase 1 (LOC500244), mRNA.					
Rattus norvegicus	RefSeq	GI_62655122-S	ILMN_67340	RGD1562029_PREDICTED	XM_576575.2	XM_576575.2		501150	109486133	XM_576575.2	RGD1562029_predicted	XP_576575.2	ILMN_1369931	0005550008	S	1963	GCCTATCGTGAAGAAGCAGGAGGACCCCACAGAGGAAACGTGGAAGGCAG	9	+	58184117-58184166	9q31	PREDICTED: Rattus norvegicus similar to KIAA2012 protein (predicted) (RGD1562029_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655124-S	ILMN_67340	RGD1562029_PREDICTED	XM_576575.2	XM_576575.2		501150	109486133	XM_576575.2	RGD1562029_predicted	XP_576575.2	ILMN_1364355	0000510292	S	3146	AACGCCTGATGGAAATGGCTGAGGAAGAACGGCTGGAGTACCAGAGGCAG	9	+	58206714-58206763	9q31	PREDICTED: Rattus norvegicus similar to KIAA2012 protein (predicted) (RGD1562029_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666682-S	ILMN_66820	LOC501538	XM_580209.1	XM_580209.1		501538	62666682	XM_580209.1	LOC501538	XP_580209.1	ILMN_1369833	0000940736	S	741	GTAGACTTGCTGATGGTATGACACCATCCCTCTGCCCTCAGCAGCTGATC					PREDICTED: Rattus norvegicus LOC501538 (LOC501538), mRNA.					
Rattus norvegicus	RefSeq	GI_62646971	ILMN_67235	CPA2_PREDICTED	XM_216107.3	XM_216107.3		296959	62646971	XM_216107.3	Cpa2_predicted	XP_216107.2	ILMN_1650345	0002940594	S	1143	TTGCCTTTGAACTGAGGGACACAGGTTTCTATGGCTTCCTCCTGCCAGCC				4q22	PREDICTED: Rattus norvegicus carboxypeptidase A2 (pancreatic) (predicted) (Cpa2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666526	ILMN_57979	RGD1565965_PREDICTED	XM_237746.4	XM_237746.4		302513	109510433	XM_237746.4	RGD1565965_predicted	XP_237746.2	ILMN_1651174	0004560520	S	580	GGCAGTCCTTAGCCCCATATCACGCCTCTCTTTTCAGCTGACTTATCTTT	X	+	19777956-19777996:19777997-19778005	Xq12	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_021262; AF171072 (predicted) (RGD1565965_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8567353-S	ILMN_301579	GNMT	NM_017084.1	NM_017084.1		25134	8567353	NM_017084.1	Gnmt	NP_058780.1	ILMN_1358041	0000580605	S	889	CTGGCTCCGGCTCCCACCCTAAGACCATCGCCTACCACAGATATTGCAGA	9	+	10130345-10130394	9q12	Rattus norvegicus glycine N-methyltransferase (Gnmt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence IMP]; The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 46655] [evidence TAS]	Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence TAS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence IDA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence TAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine [goid 17174] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine [goid 17174] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658485-S	ILMN_52477	RGD1565135_PREDICTED	XM_221922.4	XM_221922.4		304294	109495209	XM_221922.4	RGD1565135_predicted	XP_221922.4	ILMN_1350644	0006130242	S	2234	GTGGGACTGGCCTCATCAAATCTGAAGGCTGCAACCGCATGTCTTGCCGC	12	+	11955912-11955961	12p11	PREDICTED: Rattus norvegicus similar to E3 ubiquitin ligase TRIAD3B (predicted) (RGD1565135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880516-S	ILMN_285123	RGD1562140_PREDICTED	XR_008562.1	XR_008562.1		498247	109498771	XR_008562.1	RGD1562140_predicted		ILMN_1356754	0006620746	S	1139	GAAGTGATTTGGATGAGGACAACGGAGGGGGAGGACAGGAAAATGGGTCC				13q21	PREDICTED: Rattus norvegicus similar to brain Zn-finger protein (predicted) (RGD1562140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659449-S	ILMN_285123	RGD1562140_PREDICTED	XR_008562.1	XR_008562.1		498247	109498771	XR_008562.1	RGD1562140_predicted		ILMN_1352631	0006660411	S	1534	CCACTCATGTAGGAAGTGTAAACGCTTTTCCAGCTTTTGTTTACTTTGGG				13q21	PREDICTED: Rattus norvegicus similar to brain Zn-finger protein (predicted) (RGD1562140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645329-S	ILMN_53464	DNAJC10	XM_215751.4	XM_215751.4		295690	109468350	XM_215751.4	Dnajc10	XP_215751.2	ILMN_1367373	0002320546	S	3855	CCTGCTCCCTAGTCTGTCTGCATGAAGGTTATGCCGTAGGTTTGAGTTGG	3	+	63184898-63184947	3q24	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 10 (Dnajc10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718810-S	ILMN_64091	LOC501484	XM_576891.1	XM_576891.1		501484	62718810	XM_576891.1	LOC501484	XP_576891.1	ILMN_1349547	0004610706	S	2128	ACTTGGAAGAAGTGCTGGGTGGGGAGGGTTTTCTGACCCGGTGTGGGGAG					PREDICTED: Rattus norvegicus similar to GRINL1A downstream protein Gdown4 (LOC501484), mRNA.					
Rattus norvegicus	RefSeq	GI_62655809-S	ILMN_289447	KCTD5_PREDICTED	XM_001057031.1	XM_001057031.1		287109	109490289	XM_001057031.1	Kctd5_predicted	XP_001057031.1	ILMN_1372575	0000070110	S	1606	CTCATGGGGGAGCTGGCGCCTACCAGTGCCTTTGTTGTGCCTGGGATGGA				10q12	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 5 (predicted) (Kctd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660493-S	ILMN_281950	LOC498368	NM_001017500.1	NM_001017500.1		498368	62945351	NM_001017500.1	LOC498368	NP_001017500.1	ILMN_1365433	0002570035	S	1498	GTGCCTACTGTGTGCTAGAGCTTAACTTCAGGGACAGTCACCCAGGGAAC	14	+	47158053-47158102	14p11	Rattus norvegicus similar to RIKEN cDNA 0610040J01 (LOC498368), mRNA.					
Rattus norvegicus	RefSeq	GI_62656625-S	ILMN_283488	TIMM22	XM_001080619.1	XM_001080619.1		79463	109491343	XM_001080619.1	Timm22	XP_001080619.1	ILMN_1356422	0001340075	S	915	CAACTCTCCAGCTGTGAACAGGGAGGTGTCAGTGTTCGCCCATAGCCACC				10q26	PREDICTED: Rattus norvegicus translocase of inner mitochondrial membrane 22 homolog (yeast) (Timm22), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51890218-S	ILMN_271800	CCT5	NM_001004078.1	NM_001004078.1		294864	51890218	NM_001004078.1	Cct5	NP_001004078.1	ILMN_1349110	0000840398	S	1416	CAGACCATGACTGAAGTCCGAGCTAGACAAGTGAAGGAGTCTAACCCTGC	2	-	83683490-83683539	2q22	Rattus norvegicus chaperonin containing Tcp1, subunit 5 (epsilon) (Cct5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence ISS]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656948-S	ILMN_56418	SP6_PREDICTED	XM_343961.3	XM_343961.3		363672	109488891	XM_343961.3	Sp6_predicted	XP_343962.2	ILMN_1364135	0001780687	S	1123	GGGGCAAAGGCAAACGCGAAGCCGAAGGCAGCTCGGCGTCCTCCAACTGA	10	+	85744771-85744820	10q31	PREDICTED: Rattus norvegicus Sp6 transcription factor (predicted) (Sp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665490-S	ILMN_279681	RGD1311055_PREDICTED	XM_001078890.1	XM_001078890.1		292058	109508985	XM_001078890.1	RGD1311055_predicted	XP_001078890.1	ILMN_1363858	0002480091	S	303	AAATTGGAGCAGATGCGGGATGAGGAGCGGAAGGAGGAGACTTTCACCCC				19q12	PREDICTED: Rattus norvegicus similar to HSPC037 protein (predicted) (RGD1311055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658025-S	ILMN_281257	MFI2_PREDICTED	XM_001073388.1	XM_001073388.1		288038	109494539	XM_001073388.1	Mfi2_predicted	XP_001073388.1	ILMN_1369749	0003610441	S	2282	CTGCTTCAGGCCACGCCCTGCCCAGGAAAAGCTACAGAATCCAACCCAAG				11q22	PREDICTED: Rattus norvegicus antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 (predicted) (Mfi2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641541-S	ILMN_293385	MKI67_PREDICTED	XM_001056221.1	XM_001056221.1		291234	109463072	XM_001056221.1	Mki67_predicted	XP_001056221.1	ILMN_1356467	0004590180	S	3595	GCACAGAGAAAGCAACCAGCCAGGGAAACCAGGAGCAGACTCAAAGAGCC				1q41	PREDICTED: Rattus norvegicus antigen identified by monoclonal antibody Ki-67 (predicted) (Mki67_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660588-S	ILMN_267587	RGD1561042_PREDICTED	XM_001055728.1	XM_001055728.1		498386	109500692	XM_001055728.1	RGD1561042_predicted	XP_001055728.1	ILMN_1375102	0000430128	S	2320	GTTGAGTCTGGCAGGGAATGTGACTCCCAATGACCAGTGTCCCAGGGTGG				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730509K17 gene (predicted) (RGD1561042_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660586-S	ILMN_267587	RGD1561042_PREDICTED	XM_001055728.1	XM_001055728.1		498386	109500692	XM_001055728.1	RGD1561042_predicted	XP_001055728.1	ILMN_1360761	0004050692	S	5047	GCTGAAGCAGCTGGGAGACTACAGGTTCTCTGGATTTCCTCTTCACATGC				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730509K17 gene (predicted) (RGD1561042_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660590	ILMN_267587	RGD1561042_PREDICTED	XM_001055728.1	XM_001055728.1		498386	109500692	XM_001055728.1	RGD1561042_predicted	XP_001055728.1	ILMN_1650661	0006040450	S	1452	CACTGTCCACACAGGAGCGAAGCCCCAAGGCTGAACTGGAGACTTTGTAC				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730509K17 gene (predicted) (RGD1561042_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641360-S	ILMN_59517	LOC361654	XM_341935.2	XM_341935.2		361654	62641360	XM_341935.2	LOC361654	XP_341936.2	ILMN_1365960	0004060138	S	1190	GGAGCTGGCAGAGCTGAGGGACAGGGTTCAGGCTGGTCCTAAGAACGAAA				1q36	PREDICTED: Rattus norvegicus similar to cDNA sequence BC017158 (predicted) (LOC361654), mRNA.					
Rattus norvegicus	RefSeq	GI_52138601-S	ILMN_294606	PAFAH1B2	NM_022387.3	NM_022387.3		64189	52138601	NM_022387.3	Pafah1b2	NP_071782.1	ILMN_1358552	0000630131	S	1808	CACATACTAAGCAAGTGCTCTGCCGCTGAGGTAATCCCTAGACATGCTTG	8	-	48938661-48938710	8q22	Rattus norvegicus platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit (Pafah1b2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Catalysis of the reaction: 1-radyl-2-acyl-sn-glycero-3-phospholipid + 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine = 1-alkyl-2-lyso-sn-glycero-3-phosphocholine + 1-radyl-2-acetyl-sn-glycero-3-phospholipid [goid 47179] [evidence TAS]	MGC93124	MGC93124
Rattus norvegicus	RefSeq	GI_62645040-S	ILMN_267057	NR6A1	XM_001060553.1	XM_001060553.1		362125	109469834	XM_001060553.1	Nr6a1	XP_001060553.1	ILMN_1350650	0003940273	S	1597	TGCCTTGGGTAGGCAGGACAGGCTCCAGAGGAAAGGGCCAGAGACCAGAT				3q11	PREDICTED: Rattus norvegicus nuclear receptor subfamily 6, group A, member 1 (Nr6a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666697-S	ILMN_67536	COL4A5_PREDICTED	XM_343778.3	XM_343778.3		363457	109510568	XM_343778.3	Col4a5_predicted	XP_343779.2	ILMN_1360944	0004280441	S	3941	GACTCCCAGGACTTTCTGGTCAAAAGGGTGATGGAGGAGCCCCTGGCCTT	X	-	36946016-36946048:36947335-36947351	Xq14	PREDICTED: Rattus norvegicus collagen, type IV, alpha 5 (predicted) (Col4a5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640923-S	ILMN_281000	RGD1565984_PREDICTED	XM_001064027.1	XM_001064027.1		308834	109462444	XM_001064027.1	RGD1565984_predicted	XP_001064027.1	ILMN_1353901	0003990397	S	2856	GCAGGAACAGGAGAAGGAGGCACGGAGCAGGGCAGCTTACATCTCTACAC				1q32	PREDICTED: Rattus norvegicus similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (predicted) (RGD1565984_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638781-S	ILMN_269356	FPR1_PREDICTED	XM_001057934.1	XM_001057934.1		292409	109460890	XM_001057934.1	Fpr1_predicted	XP_001057934.1	ILMN_1372937	0001340180	S	696	CCACAGGCAAGGTCTTATCAAATCCAGCCGTCCCTTGCGAGTTCTCTCTT				1q12	PREDICTED: Rattus norvegicus formyl peptide receptor 1 (predicted) (Fpr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078836-S	ILMN_269842	RGD1309726	NM_001014052.1	NM_001014052.1		311720	62078836	NM_001014052.1	RGD1309726	NP_001014074.1	ILMN_1359175	0003170079	S	1748	GCTGGCCCTGCTGAGGATCTTGGTGTCTGGGAGTGGGCAGTATATCTTCC	3	+	170629600-170629649	3q43	Rattus norvegicus similar to Hypothetical protein C20orf135 (RGD1309726), mRNA.					
Rattus norvegicus	RefSeq	GI_62656087-S	ILMN_47754	LOC497905	XM_573092.1	XM_573092.1		497905	62656087	XM_573092.1	LOC497905	XP_573092.1	ILMN_1354801	0006200162	S	420	CGACTCAGCTTCATAAGGTCGCCCACAAAGACCACTGTCCTCTGAGCAGG				10q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC497905), mRNA.					
Rattus norvegicus	RefSeq	GI_62647400-S	ILMN_65150	LOC500168	XM_575520.1	XM_575520.1		500168	62647400	XM_575520.1	LOC500168	XP_575520.1	ILMN_1370884	0005390575	S	13	GTATGGAATTGCAGAGTTCATGCTCAAAATCAGCAGGAGCAACTGGGGAT					PREDICTED: Rattus norvegicus similar to Ig kappa chain precursor V region (mouse 24A) - shrew mouse (LOC500168), mRNA.					
Rattus norvegicus	RefSeq	GI_62662091-S	ILMN_62435	LOC502036	XM_577468.1	XM_577468.1		502036	62662091	XM_577468.1	LOC502036	XP_577468.1	ILMN_1359305	0000380091	S	1122	GCCAGAGAGAACGGAGATTTTCATCACAAGGAGCTAGACCATGACTGCCC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502036), mRNA.					
Rattus norvegicus	RefSeq	GI_62660131-S	ILMN_286565	WDFY3_PREDICTED	XM_001060403.1	XM_001060403.1		305164	109500259	XM_001060403.1	Wdfy3_predicted	XP_001060403.1	ILMN_1363993	0005690195	S	10528	TATAGCTTACAGCACGAGAGGGGGGCAGACGATGGGCCTCGGAACTGCTG				14p22	PREDICTED: Rattus norvegicus WD repeat and FYVE domain containing 3 (predicted), transcript variant 2 (Wdfy3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657667-S	ILMN_293876	CHAF1B	NM_001024741.1	NM_001024741.1		288242	67078529	NM_001024741.1	Chaf1b	NP_001019912.1	ILMN_1351353	0004200603	S	1728	CTGGAGAGCCCCAGGATGAGCCTCCCGAACTGAAGAGACCTAAGCTTGAA	11	+	34130723-34130772	11q11	Rattus norvegicus chromatin assembly factor 1, subunit B (p60) (Chaf1b), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_6978891-S	ILMN_263468	GHRHR	NM_012850.1	NM_012850.1		25321	6978891	NM_012850.1	Ghrhr	NP_036982.1	ILMN_1368059	0000070452	S	1546	GCTCTGAAGGGGAGCTCTTGTCAGCAGCCATTATTTGCACTTCCGGTGCA	4	+	84148424-84148473	4q24	Rattus norvegicus growth hormone releasing hormone receptor (Ghrhr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IDA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence IEA]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence ISS]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence IEA]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of water within an organism or cell [goid 30104] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of water within an organism or cell [goid 30104] [evidence ISS]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30816] [evidence IDA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33143] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33143] [evidence ISS]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; Any process that modulates the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43567] [evidence IEA]; Any process that modulates the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43567] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence ISS]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence IEA]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence ISS]; The process whose specific outcome is the progression of a somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60133] [evidence IEA]; The process whose specific outcome is the progression of a somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60133] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA];  [goid 4999] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence IDA]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence IEA]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence ISS]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA];  [goid 4999] [evidence IEA]	GHRHREC	GHRHREC
Rattus norvegicus	RefSeq	GI_62659172	ILMN_277543	RGD1559752_PREDICTED	XR_008321.1	XR_008321.1		288951	109498503	XR_008321.1	RGD1559752_predicted		ILMN_1650611	0006980133	S	1046	TGGCTGAGTGTGAGAAGGAACCGAGGATAGCCAATAACGCCCAGGAGCAC				13p12	PREDICTED: Rattus norvegicus similar to MITF-2B protein (predicted) (RGD1559752_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665324-S	ILMN_66074	LOC292045	XM_226511.3	XM_226511.3		292045	62665324	XM_226511.3	LOC292045	XP_226511.3	ILMN_1368689	0000070551	S	1737	CTGGTAGCTGCAGAGTCCCCGGTTGGTCGACACAGGAAGAGCGTTGAGAA				19q12	PREDICTED: Rattus norvegicus similar to chromodomain Y-like protein 2 (LOC292045), mRNA.					
Rattus norvegicus	RefSeq	GI_62649183-S	ILMN_262912	IFNA1	XM_001052991.1	XM_001052991.1		298210	109516197	XM_001052991.1	Ifna1	XP_001052991.1	ILMN_1369143	0001340091	S	499	GTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAGCCAACTTGCTGGG				5q32	PREDICTED: Rattus norvegicus interferon-alpha 1 (Ifna1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]	 [goid 5126] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643797-S	ILMN_65489	PBXIP1	XM_227420.4	XM_227420.4		310644	109465074	XM_227420.4	Pbxip1	XP_227420.4	ILMN_1364525	0001770440	S	2044	CTGGAGGACAGCCTGGAGGAGGTGGCACTGAAACAAACGGGTGACGATGA	2	+	181646382-181646431	2q34	PREDICTED: Rattus norvegicus pre-B-cell leukemia transcription factor interacting protein 1 (Pbxip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_11120717-S	ILMN_276550	RBCK1	NM_021764.1	NM_021764.1		60383	11120717	NM_021764.1	Rbck1	NP_068532.2	ILMN_1359443	0004010685	S	2058	CTAGCTTCCCTACCCTTACTAGCCACCAGCCTTAAACACAGCCTTGGCCT	3	-	142644379-142644428	3q41	Rattus norvegicus RanBP-type and C3HC4-type zinc finger containing 1 (Rbck1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with protein kinase C [goid 5080] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RBCK1	RBCK1
Rattus norvegicus	RefSeq	GI_27684996-S	ILMN_49861	PRKAG3_PREDICTED	XM_237293.4	XM_237293.4		301518	109486257	XM_237293.4	Prkag3_predicted	XP_237293.3	ILMN_2040509	0006040689	S	1214	ACTGCGCTGGACATCTTTGTGGACCGACGAGTGTCTGCACTGCCTGTGGT	9	-	74074544-74074593	9q33	PREDICTED: Rattus norvegicus protein kinase, AMP-activated, gamma 3 non-catatlytic subunit (predicted) (Prkag3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655211-S	ILMN_49861	PRKAG3_PREDICTED	XM_237293.4	XM_237293.4		301518	109486257	XM_237293.4	Prkag3_predicted	XP_237293.3	ILMN_1369558	0006130162	S	1441	CAGGATTGCACGGGAACAGGTGCATAGGCTGGTGTTGGTGGATGAGACCC	9	-	74071556-74071587:74071918-74071935	9q33	PREDICTED: Rattus norvegicus protein kinase, AMP-activated, gamma 3 non-catatlytic subunit (predicted) (Prkag3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653172-S	ILMN_61440	LOC503175	XM_578699.2	XM_578699.2		503175	109481399	XM_578699.2	LOC503175	XP_578699.2	ILMN_1361350	0006520348	S	42	ATCCGAGGCAGCCACAGGTTATCTTGGAGCTCGTCTTGTGTATCAACCTG	7|NW_047790.1	-	67717-67749:74823-74839		PREDICTED: Rattus norvegicus similar to Protein KIAA0280 (LOC503175), mRNA.					
Rattus norvegicus	RefSeq	GI_62650107-S	ILMN_63645	RGD1565870_PREDICTED	XM_578506.2	XM_578506.2		502996	109475795	XM_578506.2	RGD1565870_predicted	XP_578506.2	ILMN_1368099	0006290341	S	1190	AACAACTTCTACGCCACACTGCCGCGCTGAGCCGATTGACTGATGAGGTG	5	-	162487153-162487202	5q36	PREDICTED: Rattus norvegicus similar to Hypothetical protein DJ1198H6.2 (predicted) (RGD1565870_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036640-S	ILMN_300730	KCNJ8	NM_017099.2	NM_017099.2		25472	51036640	NM_017099.2	Kcnj8	NP_058795.2	ILMN_1370443	0001170494	S	1999	CTACCAGAGCCCAGGTTCATCCCCCTTAACTCCTGAGCCCTCAAGTAAGG	4	-	180143595-180143644	4q44	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 8 (Kcnj8), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.2 subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SUR1 subunit stimulates channel activity [goid 8282] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; The directed movement of potassium ions into a cell or organelle [goid 10107] [evidence IDA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IEA]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA];  [goid 15272] [evidence IDA];  [goid 15272] [evidence IEA];  [goid 15272] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir6.1; uKATP-1; UKATP1	Kir6.1; uKATP-1; UKATP1
Rattus norvegicus	RefSeq	GI_62660663-S	ILMN_66155	MXD4_PREDICTED	XM_341241.3	XM_341241.3		360961	109499916	XM_341241.3	Mxd4_predicted	XP_341242.2	ILMN_1365576	0005910204	S	870	GGTGGATATAGAGGGCATGGAGTTTGGCCCTGGGGAGCTGGACAGTGTTG	14	+	82264091-82264140	14q21	PREDICTED: Rattus norvegicus Max dimerization protein 4 (predicted) (Mxd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981383-S	ILMN_272514	PPARD	NM_013141.1	NM_013141.1		25682	6981383	NM_013141.1	Ppard	NP_037273.1	ILMN_1357865	0000450494	S	1973	CTCTCTGAGTCCGACTTTCCAAGAAACTTGCCTGGACTGACTGCCATCCC	20	+	6542950-6542999	20p12	Rattus norvegicus peroxisome proliferator-activated receptor delta (Ppard), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence NAS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence NAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence NAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The chemical reactions and pathways involving any of the vitamin A compounds, retinol, retinal (retinaldehyde) and retinoic acid, all of which are derivatives of beta-carotene [goid 6776] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence IEA]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus [goid 9266] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence ISS]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence ISS]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence ISS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43124] [evidence NAS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence NAS]; The directed movement of keratinocytes, epidermal cells which synthesize keratin, from one site to another [goid 51546] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence TAS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IPI]	Pparb	Pparb
Rattus norvegicus	RefSeq	GI_62643755-S	ILMN_63363	RGD1565775	XM_342277.3	XM_342277.3		361980	109465066	XM_342277.3	RGD1565775	XP_342278.3	ILMN_1354105	0005570577	S	2579	CGCAGCGAGAAGAGAGATGTGATGCTACCAATAGGACGGTGACTCTGACT	2	+	180842587-180842636	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810403A07 (RGD1565775), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_25742827-S	ILMN_282687	SCN7A	NM_031686.1	NM_031686.1		64155	25742827	NM_031686.1	Scn7a	NP_113874.1	ILMN_1351576	0003800286	S	6018	GAAGAGTTGGGGGCAACCAGCATGTTTAGGGGTTTTCAGTGCCCTGATCC	3	-	48633787-48633836	3q21	Rattus norvegicus sodium channel, voltage-gated, type VII, alpha (Scn7a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence TAS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]	Na-G; Scn6a	Na-G; Scn6a
Rattus norvegicus	RefSeq	GI_62648263-S	ILMN_279755	GPRC5A	XM_001071868.1	XM_001071868.1		312790	109474392	XM_001071868.1	Gprc5a	XP_001071868.1	ILMN_1359282	0002510193	S	1809	AGGAGCAGCTAAAGGTCACGTGTCTACCCTCTGTGCACTGCCCCACGATG				4q43	PREDICTED: Rattus norvegicus G protein-coupled receptor, family C, group 5, member A (Gprc5a), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242286-S	ILMN_281883	HES5	NM_024383.1	NM_024383.1		79225	13242286	NM_024383.1	Hes5	NP_077359.1	ILMN_1356643	0004200408	S	367	GCATGCAGCCAGCGACACGCAGATGAAGCTGCTTTACCACTTCCAGCGGC	5	+	171764411-171764460	5q36	Rattus norvegicus hairy and enhancer of split 5 (Drosophila) (Hes5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into an auditory hair cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 42668] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into an auditory hair cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 42668] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393582-S	ILMN_292151	HTR2A	NM_017254.1	NM_017254.1		29595	8393582	NM_017254.1	Htr2a	NP_058950.1	ILMN_1357212	0001410739	S	1290	GTGAACACTATACCAGCATTGGCCTACAAGTCTAGTCAGCTCCAGGTGGG	15	+	55532017-55532066	15q11	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 2A (Htr2a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a serotonin receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7208] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IMP]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	5Ht-2	5Ht-2
Rattus norvegicus	RefSeq	GI_62663120-S	ILMN_264347	RGD1563615_PREDICTED	XM_001064593.1	XM_001064593.1		290952	109505356	XM_001064593.1	RGD1563615_predicted	XP_001064593.1	ILMN_1367852	0004780164	S	3668	TGGGTGCAGGTCACTCTGGATCTGTAGAAGATAGACAGCCCCTTCCTAAC				17p14	PREDICTED: Rattus norvegicus similar to Contactin associated protein-like 3 precursor (Cell recognition molecule Caspr3) (predicted) (RGD1563615_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929153-S	ILMN_264154	CD164	NM_031812.1	NM_031812.1		83689	13929153	NM_031812.1	Cd164	NP_114000.1	ILMN_1365886	0003360301	S	2621	GAAACCTTTCAGAGTTTTCATCTGATTTGTCCGGAGGCTCTAGTTCTGTC	20	+	45497968-45498017	20q12	Rattus norvegicus CD164 molecule, sialomucin (Cd164), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]		MGC-24v	MGC-24v
Rattus norvegicus	RefSeq	GI_62651882-S	ILMN_64370	RGD1565311_PREDICTED	XM_343188.3	XM_343188.3		362858	109480395	XM_343188.3	RGD1565311_predicted	XP_343189.3	ILMN_1352287	0006370706	S	4333	GCATAGCCAGTCCGTGCGCTTCAGATCCAGTGGGAGACCCCATGGCTTAA	7	-	21167345-21167394	7q13	PREDICTED: Rattus norvegicus similar to RNA polymerase III subunit RPC2 (predicted) (RGD1565311_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665126-S	ILMN_289816	RGD1306157_PREDICTED	XM_001071216.1	XM_001071216.1		291947	109508629	XM_001071216.1	RGD1306157_predicted	XP_001071216.1	ILMN_1362355	0007000397	S	2416	CCAATAGAGAAGTGAAGGTCCGTGTGTGCAGGTCTGGCCGATTGACCGCG				19q11	PREDICTED: Rattus norvegicus similar to CG9882-PA (predicted) (RGD1306157_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647523-S	ILMN_47916	LOC502797	XM_578296.1	XM_578296.1		502797	62647523	XM_578296.1	LOC502797	XP_578296.1	ILMN_1361145	0004590685	S	167	ACCAGGGAAATCTCCTCAGCTCCTGATCCATAGTGCAACCAGCTTGGCAG					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502797), mRNA.					
Rattus norvegicus	RefSeq	GI_9506518-S	ILMN_297836	HAPLN1	NM_019189.1	NM_019189.1		29331	9506518	NM_019189.1	Hapln1	NP_062062.1	ILMN_1361552	0006550132	S	696	GCCTGGAGTCAGGAACTACGGGTTCTGGGACAAGGATAAGAGCAGATATG	2	+	19633615-19633664	2q12	Rattus norvegicus hyaluronan and proteoglycan link protein 1 (Hapln1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence TAS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]	Crtl1	Crtl1
Rattus norvegicus	RefSeq	GI_62641266-S	ILMN_54790	LOC499263	XM_574558.1	XM_574558.1		499263	62641266	XM_574558.1	LOC499263	XP_574558.1	ILMN_1373324	0001400494	S	1734	CATGGAGCCGTGAGACTTCAGATCCTCCTGGGAAGCCGTTGGAACCAGCT				1q36	PREDICTED: Rattus norvegicus similar to KTSR5831 (LOC499263), mRNA.					
Rattus norvegicus	RefSeq	GI_16758337-S	ILMN_301992	FTCD	NM_053567.1	NM_053567.1		89833	16758337	NM_053567.1	Ftcd	NP_446019.1	ILMN_1349772	0006110671	S	1804	GGTAGGGCCTGATTGGGGGTGGTATCCCGACACTCTCTGTTATCTGTGGC	20	-	12470308-12470357	20p12	Rattus norvegicus formiminotransferase cyclodeaminase (Ftcd), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6547] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IMP]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]	Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space [goid 19215] [evidence TAS]; Catalysis of the reaction: 5-formimidoyltetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimidoyl-L-glutamate [goid 30409] [evidence TAS]; Catalysis of the reaction: 5-formimidoyltetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimidoyl-L-glutamate [goid 30409] [evidence IEA]; Catalysis of the reaction: 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH3 [goid 30412] [evidence TAS]; Catalysis of the reaction: 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH3 [goid 30412] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647876-S	ILMN_64715	RGD1560513_PREDICTED	XM_575621.2	XM_575621.2		500271	109472437	XM_575621.2	RGD1560513_predicted	XP_575621.1	ILMN_1370230	0000070528	S	59	CATCATGAACACCAATGTTCCCCGCGCCTCAGTGCCAGAGGGATTGCTCT	4	-	134698603-134698652	4q34	PREDICTED: Rattus norvegicus similar to macrophage migration inhibitory factor (predicted) (RGD1560513_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643299-S	ILMN_275169	SKIL	XM_001057072.1	XM_001057072.1		114208	109464675	XM_001057072.1	Skil	XP_001057072.1	ILMN_1365076	0006550592	S	2057	CCATGCTGAGGCCGACAGGCAAGAACTGCAAGATGAACTGAGACAGGAGC	2	-	116669598-116669647	2q24	PREDICTED: Rattus norvegicus SKI-like, transcript variant 1 (Skil), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31542028-S	ILMN_273234	ABCC1	NM_022281.2	NM_022281.2		24565	31542028	NM_022281.2	Abcc1	NP_071617.2	ILMN_1363447	0001570170	S	2524	GGTATCAGCTACCTGCCCCAAGTGGATGTCATCATTGTCATGAGTGGCGG	10	-	478261-478310	10q11	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (Abcc1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Mrp1; Mrp; Avcc1a; Abcc1a	Mrp1; Mrp; Avcc1a; Abcc1a
Rattus norvegicus	RefSeq	GI_62643745-I	ILMN_62753	SEMA4A_PREDICTED	XM_574973.1	XM_574973.1		310630	62643745	XM_574973.1	Sema4a_predicted	XP_574973.1	ILMN_1375829	0004010605	S	2	AACGCAGGCTTCTAGCACTGGTCAGACTGGGAGAGGGAGCCCAAGAGGCA				2q34	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A (predicted) (Sema4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21617858-S	ILMN_288959	SDS	NM_053962.2	NM_053962.2		25044	21617858	NM_053962.2	Sds	NP_446414.2	ILMN_1352915	0004230619	S	1201	TGCAAACCCCACTGGCCTCGCTGGTTGTCATTGTGTGTGGTGGCAGCAAC	12	-	37281311-37281360	12q16	Rattus norvegicus serine dehydratase (Sds), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence TAS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: L-serine = pyruvate + NH3 [goid 3941] [evidence TAS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IDA]; Catalysis of the reaction: L-serine = pyruvate + NH3 [goid 3941] [evidence IEA]; Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3 [goid 4794] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	TDH; Sdhe1; RATSDHE1; MGC108581; Sdh	TDH; Sdhe1; RATSDHE1; MGC108581; Sdh
Rattus norvegicus	RefSeq	GI_56090611-S	ILMN_295342	CDCA3	NM_001007648.1	NM_001007648.1		297594	56090611	NM_001007648.1	Cdca3	NP_001007649.1	ILMN_1359147	0002320397	S	1095	CGCAGTAGACGGAAGACAAACAACAAGGTTCTAGGGAGGTCCCCACTCAC	4	+	160955723-160955772	4q42	Rattus norvegicus cell division cycle associated 3 (Cdca3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]		MGC94266	MGC94266
Rattus norvegicus	RefSeq	GI_62641468-S	ILMN_64698	LOC293521	XM_219368.3	XM_219368.3		293521	62641468	XM_219368.3	LOC293521	XP_219368.3	ILMN_1355929	0003360324	S	895	GCCTACGGCACCAGCGCACTCATAATGGAGAACCGCCCTTCAGGTGTCTT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130023H24 gene (predicted) (LOC293521), mRNA.					
Rattus norvegicus	RefSeq	GI_62658615-S	ILMN_271302	FBXO24_PREDICTED	XM_001076446.1	XM_001076446.1		304374	109497130	XM_001076446.1	Fbxo24_predicted	XP_001076446.1	ILMN_1368602	0002320066	S	1665	TACCTCAGCCAGATCCACAGTTGCCCCACGTTGCAGGACCGGATGGAGAA				12q12	PREDICTED: Rattus norvegicus F-box only protein 24 (predicted) (Fbxo24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643820	ILMN_291469	LOC361990	NM_001014175.1	NM_001014175.1		361990	62079082	NM_001014175.1	LOC361990	NP_001014197.1	ILMN_1650944	0005390092	S	2536	GGTGGACCAGAGAGCAAACCTGACTCCTATCTTCTGAGGACTTGCCTTCC	2	-	182772240-182772289	2q34	Rattus norvegicus similar to DKFZP547E1010 protein (LOC361990), mRNA.					
Rattus norvegicus	RefSeq	GI_62643588-S	ILMN_54888	RAPGEF2_PREDICTED	XM_227301.4	XM_227301.4		310533	109464963	XM_227301.4	Rapgef2_predicted	XP_227301.4	ILMN_1361539	0001170278	S	6628	ACCCGTGAGTGGCTTTGTGGACGCTGCCTGTGGAGGAGGCGAAAGTGTAC	2	-	170473153-170473202	2q32	PREDICTED: Rattus norvegicus Rap guanine nucleotide exchange factor (GEF) 2 (predicted) (Rapgef2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981039-S	ILMN_281143	HOXA1	NM_013075.1	NM_013075.1		25607	6981039	NM_013075.1	Hoxa1	NP_037207.1	ILMN_1353666	0000730053	S	764	ACAAGTACCTAACAAGAGCCCGCAGTGAGATAGCCGCGTCCCTGCAACTC	4	-	80457089-80457138	4q24	Rattus norvegicus homeo box A1 (Hoxa1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 3 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21569] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 4 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21570] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 5 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21571] [evidence ISS]; The process that contributes to the act of creating the structural organization of the facial nerve. This process pertains to the physical shaping of a rudimentary structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities [goid 21612] [evidence ISS]; The process whose specific outcome is the progression of the facial nucleus over time, from its formation to the mature structure [goid 21754] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648751-S	ILMN_61966	LOC500427	XM_575789.1	XM_575789.1		500427	62648751	XM_575789.1	LOC500427	XP_575789.1	ILMN_1352546	0002900128	S	1006	GGCCGGTAATGATGGGAAAGATTGAACGGGCTCTCCGAGTGTCTCCTCTG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC500427), mRNA.					
Rattus norvegicus	RefSeq	GI_62079238-S	ILMN_294641	CLK2	NM_001014254.1	NM_001014254.1		365842	62079238	NM_001014254.1	Clk2	NP_001014276.1	ILMN_1368228	0000060079	S	1999	CCTCATGTGGAGTCGGATGGGGGGCAGAATGACGTAACCAGGTGGTGTCT				2q34	Rattus norvegicus CDC-like kinase 2 (Clk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649479-S	ILMN_295145	RGD1560716_PREDICTED	XM_001071572.1	XM_001071572.1		298444	109477071	XM_001071572.1	RGD1560716_predicted	XP_001071572.1	ILMN_1349498	0001980438	S	291	GGGGAAGCCACGGAAAGCGGGTGGTTGTAGTTGCCTAGTGACTAAGGACG				5q36	PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (predicted) (RGD1560716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640847-S	ILMN_57281	LOC502344	XM_577811.1	XM_577811.1		502344	62640847	XM_577811.1	LOC502344	XP_577811.1	ILMN_1360662	0006180142	S	3760	GATCCTCTGAAAGCTCAAGGGGTAGTGCAGGGGACAGAAGCGTTTGCTCG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ39743 (LOC502344), mRNA.					
Rattus norvegicus	RefSeq	GI_62663158-S	ILMN_66362	LOC498693	XM_573977.1	XM_573977.1		498693	62663158	XM_573977.1	LOC498693	XP_573977.1	ILMN_1364479	0005420114	S	6491	TGGTCAAAAGAGAGGCGTGGCAGAAAGGGCCAGACAGCCCCAGAAATGCG				17p14	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932411G14 (LOC498693), mRNA.					
Rattus norvegicus	RefSeq	GI_62654505-S	ILMN_60449	LOC316085	XM_236715.3	XM_236715.3		316085	62654505	XM_236715.3	LOC316085	XP_236715.3	ILMN_1364379	0002340451	S	4477	CTGGTTCATCATGTTCTCAGCTCTCCTGGCTGCCGTGTACGTGTGCAGTC				8q32	PREDICTED: Rattus norvegicus similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted) (LOC316085), mRNA.					
Rattus norvegicus	RefSeq	GI_62640951-S	ILMN_62473	DGAT2	XM_574498.1	XM_574498.1		252900	62640951	XM_574498.1	Dgat2	XP_574498.1	ILMN_1376048	0000940754	S	322	CCTTCAGGACATGTTGCCCTCCTGGGCTCTGTGCATATTTTATCCCCGGG				1q32	PREDICTED: Rattus norvegicus diacylglycerol O-acyltransferase homolog 2 (mouse) (Dgat2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 6071] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence ISS]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence IEA]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence ISS]	Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol [goid 3846] [evidence ISS]; Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol [goid 3846] [evidence IEA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence IDA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence ISS]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence IEA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641700-S	ILMN_272451	RGD1305824_PREDICTED	XM_001070736.1	XM_001070736.1		361695	109463318	XM_001070736.1	RGD1305824_predicted	XP_001070736.1	ILMN_1354221	0001170524	S	832	CCACCAGGCCTCTTTGGATTTGCTCAGGAAGTTTGGGACATGCCAGCCTG				1q42	PREDICTED: Rattus norvegicus similar to 2410001H17Rik protein (predicted) (RGD1305824_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662077-S	ILMN_283837	DOCK9	XM_001078910.1	XM_001078910.1		259237	109502965	XM_001078910.1	Dock9	XP_001078910.1	ILMN_1371166	0001450195	S	6638	GCCCCCTGGAGGAGAAGACAAGCGTGCTACCAAATTCCCTGCACATCTTC				15q25	PREDICTED: Rattus norvegicus dedicator of cytokinesis 9 (Dock9), mRNA.	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence ISS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090276-S	ILMN_268939	RPLP1	NM_001007604.1	NM_001007604.1		140661	56090276	NM_001007604.1	Rplp1	NP_001007605.1	ILMN_1360590	0003520110	S	2	GGCCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGAAGCTAA	8	-	66047502-66047551	8q24	Rattus norvegicus ribosomal protein, large, P1 (Rplp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72935	MGC72935
Rattus norvegicus	RefSeq	GI_62666476-S	ILMN_266697	WDR44	XM_001061437.1	XM_001061437.1		246152	109512479	XM_001061437.1	Wdr44	XP_001061437.1	ILMN_1365867	0004050731	S	2783	CGTCAGCCATCTTTGCTCCAAACCCAAGTTTGATGCTATCCTTGGATGTG				Xq12	PREDICTED: Rattus norvegicus WD repeat domain 44 (Wdr44), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IMP]	Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_6981431-S	ILMN_288016	PTGER1	NM_013100.1	NM_013100.1		25637	6981431	NM_013100.1	Ptger1	NP_037232.1	ILMN_1373922	0006380673	S	1880	GTGCTGCATCCTGTGGGTCCGCAACACTGTCACAGCACTGGGGGGAAAGA	19	-	26160802-26160851	19q11	Rattus norvegicus prostaglandin E receptor 1 (subtype EP1) (Ptger1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666589-S	ILMN_61917	WDR13_PREDICTED	XM_228783.4	XM_228783.4		317370	109510475	XM_228783.4	Wdr13_predicted	XP_228783.4	ILMN_1364436	0006590136	S	1428	TTTGATGCCCCTGGCCGGCTGCTCTGGGCAGGTGATGACCGTGGCAGTGT	X	+	26397613-26397662	Xq13	PREDICTED: Rattus norvegicus WD repeat domain 13 (predicted) (Wdr13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576338-S	ILMN_276193	OLR1531	NM_001001102.1	NM_001001102.1		405998	47576338	NM_001001102.1	Olr1531	NP_001001102.1	ILMN_1358177	0000730600	S	183	CCTTGGAAATTTAGCCTTTGCTGATGCCTGCAGTTCATCCTCGGTGACAC	11	+	41811320-41811369	11q12	Rattus norvegicus olfactory receptor 1531 (Olr1531), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1531	Olr1531
Rattus norvegicus	RefSeq	GI_48926646-S	ILMN_278637	DCI	NM_017306.3	NM_017306.3		29740	48926646	NM_017306.3	Dci	NP_059002.1	ILMN_1361402	0003840551	S	856	CTTGGAAAAGCTCAAGCAAAAGAAGGGCTGACCTAAGGGTGCCACACGGG	10	+	13697057-13697087:13697088-13697106	10q12	Rattus norvegicus dodecenoyl-coenzyme A delta isomerase (Dci), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence TAS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA [goid 4165] [evidence IDA]; Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA [goid 4165] [evidence IEA]; Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA [goid 4165] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA [goid 4165] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654037-S	ILMN_291558	RGD1561808_PREDICTED	XR_008016.1	XR_008016.1		367126	109485072	XR_008016.1	RGD1561808_predicted		ILMN_1369093	0007050427	S	60	CAAGGTTGGCACCACATCTGCCTTGACCCCTAAGGTGAGTCCTCTGGGTT				8q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (predicted) (RGD1561808_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28212263	ILMN_272981	TAAR8B	NM_175601.1	NM_175601.1		319106	28212263	NM_175601.1	Taar8b	NP_783191.1	ILMN_1650729	0007000632	S	534	CCTAGTAAGTGCTCTCAACTGTGTAGGAGGCTGCCAAGTTGCGATCAATC	1	+	21830446-21830495	1p12	Rattus norvegicus trace-amine-associated receptor 8b (Taar8b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta7	Ta7
Rattus norvegicus	RefSeq	GI_16758783-S	ILMN_288333	DNASE1L3	NM_053907.1	NM_053907.1		116687	16758783	NM_053907.1	Dnase1l3	NP_446359.1	ILMN_1356205	0006370398	S	1281	CAAGTTGGGAGGAGAGCCTTCTGTTACATCACCCTGACCACGGGCACCCT	15	+	18935223-18935272	15p14	Rattus norvegicus deoxyribonuclease 1-like 3 (Dnase1l3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence TAS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks [goid 4520] [evidence IDA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC108624	MGC108624
Rattus norvegicus	RefSeq	GI_62645956-S	ILMN_282789	ZFP339_PREDICTED	XM_001054248.1	XM_001054248.1		296201	109470923	XM_001054248.1	Zfp339_predicted	XP_001054248.1	ILMN_1374531	0000540079	S	1628	GAGACGCCGGTGCCACATTTACTTGGACTTTTGGTCTGAGGCGTGCCCCT				3q41	PREDICTED: Rattus norvegicus zinc finger protein 339 (predicted) (Zfp339_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662295-I	ILMN_60926	BTD_PREDICTED	XM_577477.1	XM_577477.1		306262	62662295	XM_577477.1	Btd_predicted	XP_577477.1	ILMN_1375542	0006660086	S	935	AGCAGACAACCTGCGCAAGCCTTCTCACCTGAGCCTGATGGGCTATTCAG				16p16	PREDICTED: Rattus norvegicus biotinidase (predicted) (Btd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652758-S	ILMN_266784	ADSL_PREDICTED	XM_001076341.1	XM_001076341.1		315150	109482505	XM_001076341.1	Adsl_predicted	XP_001076341.1	ILMN_1369783	0006900161	S	1467	CTACGGAAGTGTGATGGCAGTGAAGGCGGAGCTGTGTCTGTAGAGGAGAG				7q34	PREDICTED: Rattus norvegicus adenylosuccinate lyase (predicted) (Adsl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718730-S	ILMN_56755	LOC501457	XM_576867.1	XM_576867.1		501457	62718730	XM_576867.1	LOC501457	XP_576867.1	ILMN_1358134	0006400592	S	391	CTGTGGGGTCAGACTTCGAGAGATTCATCATGTGGGAGTGACGTCTTACG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501457), mRNA.					
Rattus norvegicus	RefSeq	GI_62656560-S	ILMN_282531	RGD1307493_PREDICTED	XM_001080742.1	XM_001080742.1		303317	109491331	XM_001080742.1	RGD1307493_predicted	XP_001080742.1	ILMN_1355596	0004150079	S	1464	CCTGGGGTAGTCTCTGCCTTCGGGATGTTGATAAGCCTCTGGATTTGTGG					PREDICTED: Rattus norvegicus similar to membrane protein expressed in epithelial-like lung adenocarcinoma (predicted) (RGD1307493_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659766-S	ILMN_68229	DUSP23_PREDICTED	XM_341156.3	XM_341156.3		360881	109498229	XM_341156.3	Dusp23_predicted	XP_341157.1	ILMN_1366372	0001170632	S	505	GGCCGTCTTCCAGTTCTACCAGCGAACAAAATGAGGGGTTCGGTAGCCCC	13	-	88637654-88637670:88637671-88637703	13q24	PREDICTED: Rattus norvegicus dual specificity phosphatase 23 (predicted) (Dusp23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646168-S	ILMN_281503	OTOR_PREDICTED	XM_001053452.1	XM_001053452.1		366206	109470908	XM_001053452.1	Otor_predicted	XP_001053452.1	ILMN_1351666	0006620402	S	327	CCCCAGCAACTTGGTTAGAGAGCAACGAGTGTACCAGGAGGCCACCAAGG				3q41	PREDICTED: Rattus norvegicus otoraplin (predicted) (Otor_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653456-S	ILMN_272689	TMEM45B	NM_001033067.1	NM_001033067.1		315524	74271856	NM_001033067.1	Tmem45b	NP_001028239.1	ILMN_1370988	0002650239	S	1046	AGCGGCTCGGATGAGGAGTGACCTCAGGCTTGGAGCTGTGGAGACCTCAC	8	-	31180539-31180568:31180569-31180588	8q13	Rattus norvegicus transmembrane protein 45b (Tmem45b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124767; RGD1305586	MGC124767; RGD1305586
Rattus norvegicus	RefSeq	GI_62078980-S	ILMN_273100	U1SNRNPBP	NM_001014127.1	NM_001014127.1		360803	62078980	NM_001014127.1	U1snrnpbp	NP_001014149.1	ILMN_1348842	0005690524	S	1029	GTGTTCACATGCCGTCATCCCAGCACTCGGGAGTTGGAGGCAGGAGTATG	12	-	33224533-33224582	12q15	Rattus norvegicus U11/U12 snRNP 35K (U1snrnpbp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656279-S	ILMN_263509	LOC687570	XM_001079185.1	XM_001079185.1		687570	109491071	XM_001079185.1	LOC687570	XP_001079185.1	ILMN_1364015	0006980020	S	3457	GAAGGCTCTGTGCTGCCTGTGTGGAGTGCTCATGGGGAAGGTTACATGGC					PREDICTED: Rattus norvegicus similar to phosphoribosylformylglycinamidine synthase (LOC687570), mRNA.		The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate [goid 6189] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + 5'-phosphoribosylformylglycinamide + L-glutamine + H2O = ADP + phosphate + 5'-phosphoribosylformylglycinamidine + L-glutamate [goid 4642] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663977-S	ILMN_284177	LOC678897	XM_001053690.1	XM_001053690.1		678897	109506254	XM_001053690.1	LOC678897	XP_001053690.1	ILMN_1364594	0006660095	S	2485	GCTTTACCCGCCTCCTCTGCTTTAAGTGCAAGTAAGATACCCGGGCCACG					PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 158 isoform a (LOC678897), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642736-S	ILMN_58654	THBS4	XM_342172.3	XM_342172.3		29220	109464253	XM_342172.3	Thbs4	XP_342173.3	ILMN_1350042	0001690091	S	3231	CACCATACCAGAGGACTTCCAGGAGTTCCAGATCCAGACCTTTGACCGCC	2	-	23010999-23011048	2q12	PREDICTED: Rattus norvegicus thrombospondin 4 (Thbs4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IDA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Interacting selectively with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids [goid 1968] [evidence IDA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence IDA]; Interacting selectively with laminin-1, a glycoprotein trimer with the subunit composition alpha1, beta1, gamma1 [goid 43237] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62649734-S	ILMN_67673	BAI2_PREDICTED	XM_232778.4	XM_232778.4		313058	109475561	XM_232778.4	Bai2_predicted	XP_232778.4	ILMN_1362409	0002650592	S	4800	ATTTTCACACTCCACTTTGGAACTACCAGGAGCCAGCGCCCCTCCCCCTC	5	+	149045982-149046031	5q36	PREDICTED: Rattus norvegicus brain-specific angiogenesis inhibitor 2 (predicted) (Bai2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576982-S	ILMN_273630	OLR267	NM_001000228.1	NM_001000228.1		293435	47576982	NM_001000228.1	Olr267	NP_001000228.1	ILMN_1349980	0005890333	S	786	TGTGATGCCCAAGTCCAGCTACTCCACTGACCAGAACAAAGTGATGTCTG	1	+	165935971-165936020	1q33	Rattus norvegicus olfactory receptor 267 (Olr267), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-166045849-166046793_ORF; Olr267	ratchr1-166045849-166046793_ORF; Olr267
Rattus norvegicus	RefSeq	GI_62642786-S	ILMN_61151	LOC499514	XM_574838.1	XM_574838.1		499514	62642786	XM_574838.1	LOC499514	XP_574838.1	ILMN_1369362	0006900139	S	735	GAAAGAAATGGCAAAATCCGAATCGGCTGGGGACTTTCCGTGTGGGCGGC					PREDICTED: Rattus norvegicus similar to nucleophosmin 1 (LOC499514), mRNA.					
Rattus norvegicus	RefSeq	GI_21955177-S	ILMN_269345	HDGFRP3	NM_145785.1	NM_145785.1		252941	21955177	NM_145785.1	Hdgfrp3	NP_665728.1	ILMN_1367226	0003180255	S	2169	AAATCCCAGCGTGGTCGTGATGATGAAGGTGATGCAGGGCTATGAGGCTT	1	-	138099128-138099177	1q31	Rattus norvegicus hepatoma-derived growth factor, related protein 3 (Hdgfrp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34855276-S	ILMN_291675	HOXD13_PREDICTED	XM_001063399.1	XM_001063399.1		288154	109470111	XM_001063399.1	Hoxd13_predicted	XP_001063399.1	ILMN_1360924	0000050286	S	688	CTAGCCAACGGGTGGAACAGCCAGGTGTATTGTGCCAAGGACCAGCCGCA				3q23	PREDICTED: Rattus norvegicus homeo box D13 (predicted) (Hoxd13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543457-S	ILMN_281737	PAK2	NM_053306.2	NM_053306.2		29432	31543457	NM_053306.2	Pak2	NP_445758.2	ILMN_1372206	0005900441	S	1652	GCTTGACGCCTCTGATCCTGGCAGCTAAAGAAGCAATGAAGAGTAACCGC	11	+	70588365-70588400:70588401-70588414	11q22	Rattus norvegicus p21 (CDKN1A)-activated kinase 2 (Pak2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	gamma-PAK	gamma-PAK
Rattus norvegicus	RefSeq	GI_62658748-I	ILMN_66715	LOC304396	XM_222072.3	XM_222072.3		304396	62658748	XM_222072.3	LOC304396	XP_222072.3	ILMN_1375440	0003990563	S	115	AGATTAGCAGCCACATCCCGGCGTCCAGTGAACCTGGAGCGAACGCCTTT				12q12	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434K1815 (LOC304396), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34879639-S	ILMN_264802	RGD1309120	XM_001054484.1	XM_001054484.1		360994	109500146	XM_001054484.1	RGD1309120	XP_001054484.1	ILMN_1361310	0002320025	S	207	TCCCCGGCAAGGGCAGTGTATGGGGTGTTGCTTACAAACTACCAGTCGGG	14	-	112115963-112116002:112122454-112122463	14q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510006C20 (RGD1309120), mRNA.					
Rattus norvegicus	RefSeq	GI_62657464-S	ILMN_66526	CHMP6_PREDICTED	XM_237816.4	XM_237816.4		287873	109489459	XM_237816.4	Chmp6_predicted	XP_237816.2	ILMN_1375080	0002370672	S	1333	TGGACACACTAAGCCACCAACGCCCAGGAGGCACAGAACTGGGAGGACCT	10	+	109323129-109323178	10q32.3	PREDICTED: Rattus norvegicus chromatin modifying protein 6 (predicted) (Chmp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666884-S	ILMN_288503	RGD1561320_PREDICTED	XM_001059223.1	XM_001059223.1		363472	109511836	XM_001059223.1	RGD1561320_predicted	XP_001059223.1	ILMN_1367295	0001990154	S	472	GGGCGCTCAGATTCAGTTTCCACTCGCCTTTCCAACTGTGATCCCCCACC				Xq22	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1561320_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621143-S	ILMN_161709	AQP9	NM_022960.2	NM_022960.2		65054	55742829	NM_022960.2	Aqp9	NP_075249.1	ILMN_2040898	0006650349	S	1391	TTCTTCAGAGAAGATGTCACCTGTGTGCCTATGCAGACTTGGGGCGGGGG	8	-	75611762-75611811	8q24	Rattus norvegicus aquaporin 9 (Aqp9), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells [goid 6863] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS];  [goid 15722] [evidence IDA]; The directed movement of polyols, any polyhydric alcohol, into, out of, within or between cells [goid 15791] [evidence IEA]; The directed movement of polyols, any polyhydric alcohol, into, out of, within or between cells [goid 15791] [evidence ISS]; The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of, within or between cells [goid 15837] [evidence ISS]; The directed movement of pyrimidines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells [goid 15855] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other [goid 5345] [evidence ISS]; Catalysis of the transfer of pyrimidines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other [goid 5350] [evidence ISS]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence ISS]	MGC93419	MGC93419
Rattus norvegicus	RefSeq	GI_62654451-S	ILMN_57683	LOC360443	XM_346841.2	XM_346841.2		360443	62654451	XM_346841.2	LOC360443	XP_346842.1	ILMN_1357413	0003140091	S	3180	CGGCTCAAATATCACCCGAGATTCTTCCACGGTCACCGACTCCGTCATTC					PREDICTED: Rattus norvegicus hypothetical LOC360443 (LOC360443), mRNA.					
Rattus norvegicus	RefSeq	GI_8393847-S	ILMN_270079	MECR	NM_017209.1	NM_017209.1		29470	8393847	NM_017209.1	Mecr	NP_058905.1	ILMN_1350310	0006860369	S	997	GCTGATTCTCATTCTCTGCAACCTCATCCGCCAAGGCCAGCTCACAGCCC	5	+	150724914-150724963	5q36	Rattus norvegicus mitochondrial trans-2-enoyl-CoA reductase (Mecr), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+ [goid 19166] [evidence ISS]	Nrbf1	Nrbf1
Rattus norvegicus	RefSeq	GI_39930498-S	ILMN_284944	LANCL1	NM_053723.1	NM_053723.1		114515	39930498	NM_053723.1	Lancl1	NP_446175.1	ILMN_1354187	0001980341	S	1186	AGGGCCTGTAAGTTTGCTGAGTGGTGCTTAGACTATGGAGAGCACGGGTG	9	-	65800092-65800130:65800499-65800509	9q32	Rattus norvegicus lanC (bacterial lantibiotic synthetase component C)-like 1 (Lancl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence IEA]	p40; GPR69A; MGC93999	p40; GPR69A; MGC93999
Rattus norvegicus	RefSeq	GI_62643001-S	ILMN_49500	LOC499537	XM_574859.1	XM_574859.1		499537	62643001	XM_574859.1	LOC499537	XP_574859.1	ILMN_1372268	0004010286	S	2666	CAGCCATGCCAGTTACAGCGGACCCTCCTCTCTCCTAACTCATTTTGCTC				2q16	PREDICTED: Rattus norvegicus similar to FYN binding protein (LOC499537), mRNA.					
Rattus norvegicus	RefSeq	GI_62643773-S	ILMN_64167	SCAMP3	XM_342279.3	XM_342279.3		65169	109465076	XM_342279.3	Scamp3	XP_342280.2	ILMN_1354138	0000070739	S	1390	GCCATGACTCTAAGCCTGACTGGAGGTGTGGAGAGCCCACTGTGACTCAG	2	+	181263516-181263565	2q34	PREDICTED: Rattus norvegicus secretory carrier membrane protein 3 (Scamp3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_27677427-S	ILMN_61363	LOC304872	XM_222750.1	XM_222750.1		304872	27677427	XM_222750.1	LOC304872	XP_222750.1	ILMN_1356114	0004670059	S	1451	CGAATTGGCGCAGCACATCCGCATGCACAATGGGGAGAGACCCTACCAGT					PREDICTED: Rattus norvegicus similar to zinc finger protein 648 (LOC304872), mRNA.					
Rattus norvegicus	RefSeq	GI_62659638-S	ILMN_60548	POU2F1	XM_341148.3	XM_341148.3		171068	109498134	XM_341148.3	Pou2f1	XP_341149.3	ILMN_1364844	0006290112	S	1990	CCCTCACAGTTTGCTGCTGGAGGTGCCTTACTCAGTCTCAATCCGGGGAC	13	-	81608998-81609028:81610960-81610978	13q23	PREDICTED: Rattus norvegicus POU domain, class 2, transcription factor 1 (Pou2f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27715462-S	ILMN_265452	RGD1566188_PREDICTED	XR_007873.1	XR_007873.1		298338	109512468	XR_007873.1	RGD1566188_predicted		ILMN_1359737	0006450044	S	906	GTACAGGAAGCCTGGCAACAGTCGCAGAGCCGGTGATTGGTACTGTGATG					PREDICTED: Rattus norvegicus similar to testis expressed sequence 13B (predicted) (RGD1566188_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642384-S	ILMN_289944	KAZALD1	NM_001033064.1	NM_001033064.1		293997	74271918	NM_001033064.1	Kazald1	NP_001028236.1	ILMN_1364623	0004850014	S	1068	GGTGGATATAGCACCCCAACCCTGCTGTGGAGAAGGCCTGGAGAAGACTG	1	+	250192799-250192848	1q54	Rattus norvegicus Kazal-type serine peptidase inhibitor domain 1 (Kazald1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]	MGC125157	MGC125157
Rattus norvegicus	RefSeq	GI_62662403-S	ILMN_268052	GLT25D1_PREDICTED	XM_001065857.1	XM_001065857.1		290637	109503912	XM_001065857.1	Glt25d1_predicted	XP_001065857.1	ILMN_1354976	0006200440	S	1765	GACAGAGCCAAGTCCCAGAAGATGCGGGAACAGCAAGCACTGAGCCGTGA				16p14	PREDICTED: Rattus norvegicus glycosyltransferase 25 domain containing 1 (predicted), transcript variant 3 (Glt25d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454311-S	ILMN_264102	BZW1	NM_198789.1	NM_198789.1		363232	38454311	NM_198789.1	Bzw1	NP_942084.1	ILMN_2039706	0001090544	S	1507	GGTTACTGGGAAGGTTGGGTTTGGTTCCTGAACCGTGTGTAAGGAGCTGC	9	+	57065429-57065478	9q31	Rattus norvegicus basic leucine zipper and W2 domains 1 (Bzw1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC73015	MGC73015
Rattus norvegicus	RefSeq	GI_62650879-S	ILMN_274909	SIX4_PREDICTED	XM_001080700.1	XM_001080700.1		299138	109479519	XM_001080700.1	Six4_predicted	XP_001080700.1	ILMN_1360356	0003940056	S	2084	GTGAGCCACGCCTCGCCAGCAGTCCACCAGGATTTTGTAAGAGAACAGCG				6q24	PREDICTED: Rattus norvegicus sine oculis-related homeobox 4 homolog (Drosophila) (predicted) (Six4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653394-S	ILMN_265074	MBD3L2_PREDICTED	XM_001075118.1	XM_001075118.1		300375	109484280	XM_001075118.1	Mbd3l2_predicted	XP_001075118.1	ILMN_1370055	0005910400	S	448	GGGGTAACAATGCCAGTACCTCTTCGTCTGTCACCATCGTACTGCCTACA				8q12	PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 3-like 2 (predicted) (Mbd3l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662948-S	ILMN_279223	MGC112830	NM_001025718.1	NM_001025718.1		361178	71043769	NM_001025718.1	MGC112830	NP_001020889.1	ILMN_1360118	0000630400	S	2179	GAACCGTTAACTGCACAGCTGCCCTTAGCTGCCTGTTCTAAATGATGGTC	16	-	81018168-81018217	16q12.5	Rattus norvegicus similar to transcription factor (MGC112830), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656147-S	ILMN_50813	WNT3A_PREDICTED	XM_220546.4	XM_220546.4		303181	109488200	XM_220546.4	Wnt3a_predicted	XP_220546.4	ILMN_1362833	0005220537	S	1227	GCGCACTGAGCGACGGAGGGAGAAATGCCACTGTGTTTTCCACTGGTGCT	10	-	45553737-45553786	10q22	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 3A (predicted) (Wnt3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647880-S	ILMN_64886	LOC297483	XM_232222.3	XM_232222.3		297483	62647880	XM_232222.3	LOC297483	XP_232222.3	ILMN_1370674	0004120129	S	2781	GTACAGACACAACACGCCAAGGAAAGGGCTTGGGCACTGGGGAGTCTTGG				4q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10539 (predicted) (LOC297483), mRNA.					
Rattus norvegicus	RefSeq	GI_62648370-S	ILMN_300021	RGD1564159_PREDICTED	XR_007759.1	XR_007759.1		502882	109474149	XR_007759.1	RGD1564159_predicted		ILMN_1364352	0004150577	S	36	GAATCTGGAACTGAAGCCGGGGAATAAGTACAGCACTCAGGGCAAGCAAC				4q42	PREDICTED: Rattus norvegicus similar to eukaryotic translation elongation factor 1 epsilon 1 (predicted) (RGD1564159_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638279-S	ILMN_64248	RAET1E_PREDICTED	XM_218124.2	XM_218124.2		292450	62638279	XM_218124.2	Raet1e_predicted	XP_218124.2	ILMN_1370737	0004560609	S	892	AGGGCAAAGGAAGGAGGAACCATGTACAGGAGGAGCCCTTGAGAGAGCGG				1p13	PREDICTED: Rattus norvegicus retinoic acid early transcript 1E (predicted) (Raet1e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577160-S	ILMN_264295	OLR340	NM_001000253.1	NM_001000253.1		293785	47577160	NM_001000253.1	Olr340	NP_001000253.1	ILMN_1353882	0000510102	S	754	TCAGGCATCTTCATGTATTTACAGCCCAGCTCCAGTCACACCATGGGAAG	1	+	216001824-216001873	1q43	Rattus norvegicus olfactory receptor 340 (Olr340), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr340	Olr340
Rattus norvegicus	RefSeq	GI_27719330-S	ILMN_50025	LOC300342	XM_235797.1	XM_235797.1		300342	27719330	XM_235797.1	LOC300342	XP_235797.1	ILMN_1350661	0000060369	S	785	GATCTGTGAGGAGGATGTATCTCCCTTTGCTCAGATCTGTGAGGAGGATG					PREDICTED: Rattus norvegicus similar to antigen 332, putative (LOC300342), mRNA.					
Rattus norvegicus	RefSeq	GI_62646209-S	ILMN_50612	FER1L4_PREDICTED	XM_230795.3	XM_230795.3		296307	62646209	XM_230795.3	Fer1l4_predicted	XP_230795.3	ILMN_1361225	0002810292	S	5344	AGGACCTGGAGTTCACAGACACAGGGGGCAACGTCTACATCCTCACAGGG				3q42	PREDICTED: Rattus norvegicus fer-1-like 4 (C. elegans) (predicted) (Fer1l4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665968-S	ILMN_271785	LOC499431	XM_001056763.1	XM_001056763.1		499431	109510112	XM_001056763.1	LOC499431	XP_001056763.1	ILMN_1357158	0004200671	S	2709	GATGGCTTACCAGTCCAAGGCTGCTGGAACAAGTGATGCCTCTAACCTCG				20q11	PREDICTED: Rattus norvegicus similar to alpha 1 type XIII collagen isoform 16 (LOC499431), mRNA.					
Rattus norvegicus	RefSeq	GI_23308738-S	ILMN_270966	ANGPT1	NM_053546.1	NM_053546.1		89807	23308738	NM_053546.1	Angpt1	NP_445998.1	ILMN_1364587	0001690537	S	1728	AGGACCCAGTTACTCCTTACGTTCCACAACCATGATGATCCGGCCCTTGG	7	-	78195616-78195665	7q31	Rattus norvegicus angiopoietin 1 (Angpt1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B3 stimulus [goid 33552] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Ang-1; Agpt1; Agpt	Ang-1; Agpt1; Agpt
Rattus norvegicus	RefSeq	GI_62662778	ILMN_61196	LOC306511	XM_224924.2	XM_224924.2		306511	62662778	XM_224924.2	LOC306511	XP_224924.2	ILMN_1649908	0001340121	S	94	CTGATAGCCAGTGATGTCTTTGTGTCTGCAGGGGCTACTGGGAACAGGGG				16q12.2	PREDICTED: Rattus norvegicus similar to ribosomal protein L9 (LOC306511), mRNA.					
Rattus norvegicus	RefSeq	GI_62661402	ILMN_62970	LOC364336	XM_344360.2	XM_344360.2		364336	62661402	XM_344360.2	LOC364336	XP_344361.2	ILMN_1650481	0001690402	S	365	CAGGAAACCCCATGGTTCAAGGAATGAATGGCTTTGTGGCTGAGTTCAGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC364336), mRNA.					
Rattus norvegicus	RefSeq	GI_38454231-S	ILMN_293283	KLRA5	NM_198746.1	NM_198746.1		297666	38454231	NM_198746.1	Klra5	NP_942041.1	ILMN_1357827	0005570333	S	192	GGGTTGCAGAACCAAGTGAAGCCTGAGGAGACTAAAGGGCCCAAAGAAGC	4	-	168760534-168760538:168762166-168762210	4q42	Rattus norvegicus killer cell lectin-like receptor, subfamily A, member 5 (Klra5), mRNA.		The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor [goid 30101] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Ly-49.9	Ly-49.9
Rattus norvegicus	RefSeq	GI_62643527-S	ILMN_273584	LOC683159	XM_001064716.1	XM_001064716.1		683159	109466765	XM_001064716.1	LOC683159	XP_001064716.1	ILMN_1357582	0002230195	S	55	GAGGCGTCCAAGCAGCATGAAGTGAACCTGCAAGCCAGGTGCTACGAGCT					PREDICTED: Rattus norvegicus hypothetical protein LOC683159 (LOC683159), mRNA.					
Rattus norvegicus	RefSeq	GI_62655979-S	ILMN_64986	LOC363576	XM_343879.2	XM_343879.2		363576	62655979	XM_343879.2	LOC363576	XP_343880.2	ILMN_1369860	0001740692	S	384	GGTGGAGAATCACAGGGAGGACTATAAGCGGAATGGCAAGTCTTCATGGA				10q21	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 13, Wayne State University 177, expressed (LOC363576), mRNA.					
Rattus norvegicus	RefSeq	GI_62657562-S	ILMN_56229	NRIP1_PREDICTED	XM_221724.2	XM_221724.2		304157	62657562	XM_221724.2	Nrip1_predicted	XP_221724.1	ILMN_1355813	0002190066	S	6420	TGATTACCTGCTGCATGACAAGTGCATGGGAAACCCTGTGCATCCGTGCA				11q11	PREDICTED: Rattus norvegicus nuclear receptor interacting protein 1 (predicted) (Nrip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648133-S	ILMN_262811	CD163_PREDICTED	XM_001061914.1	XM_001061914.1		312701	109474186	XM_001061914.1	Cd163_predicted	XP_001061914.1	ILMN_1350943	0000060603	S	3627	AGAAGTCTATGTAGCCTAAGAGGCTGATCACTGAAAGGGGTGCACCAACC				4q42	PREDICTED: Rattus norvegicus CD163 antigen (predicted) (Cd163_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659556-S	ILMN_56425	RASAL2_PREDICTED	XM_222780.4	XM_222780.4		304893	109498072	XM_222780.4	Rasal2_predicted	XP_222780.4	ILMN_1369925	0001990450	S	4071	AACAAGAAATTAGCAAACTGAAGGAGCGTCTGCGGGTGTCCAGCCGGCGG	13	-	72388717-72388766	13q22	PREDICTED: Rattus norvegicus RAS protein activator like 2 (predicted) (Rasal2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639345	ILMN_50506	POLR2I_PREDICTED	XM_214895.4	XM_214895.4		292778	109458541	XM_214895.4	Polr2i_predicted	XP_214895.2	ILMN_1651148	0001850022	S	280	GCAGTGTTCTTCCAGTCACACAGTGCCCGAGCTGAGGATGCCATGCGCCT	1	-	85489180-85489194:85489374-85489408	1q21	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide I (predicted) (Polr2i_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661378-A	ILMN_282388	LMO7	NM_001001515.1	NM_001001515.1		361084	48040389	NM_001001515.1	Lmo7	NP_001001515.1	ILMN_1376827	0001240315	S	5102	CCGGAGCCGAAGTCAGAATCCGAAACCACCAACTGTACTGCAATGACTGC	15	+	85927174-85927223	15q21	Rattus norvegicus LIM domain only 7 (Lmo7), mRNA.	An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin. The myosin may be organized into filaments [goid 31032] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with actinin, any member of a family of proteins that crosslink F-actin [goid 42805] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638815-S	ILMN_283228	LOC683463	XM_001066042.1	XM_001066042.1		683463	109461042	XM_001066042.1	LOC683463	XP_001066042.1	ILMN_1366909	0001170170	S	2235	GGAACCATCCAGGCTCAGGAGGGCGGGAGCTATCTCACCTGTCGTATCAA					PREDICTED: Rattus norvegicus similar to paired-Ig-like receptor B (LOC683463), mRNA.					
Rattus norvegicus	RefSeq	GI_62638421-S	ILMN_48767	RGD1566336_PREDICTED	XM_217737.4	XM_217737.4		308064	109457648	XM_217737.4	RGD1566336_predicted	XP_217737.4	ILMN_1367221	0001410162	S	2113	CCGCCCTGGGGCTTCTTCACGTTTGGGAAGTTTTCATTACACATCCTGCG	1	+	30061353-30061402	1p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933440J22 (predicted) (RGD1566336_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655710-S	ILMN_275081	CORO7	XM_001077234.1	XM_001077234.1		192276	109489609	XM_001077234.1	Coro7	XP_001077234.1	ILMN_1351989	0003140056	S	3399	GGAGAAAGGGTCTCGTGGAGCTAACAGCCTCATTACAGTGGTGTGGACCC				10q12	PREDICTED: Rattus norvegicus coronin 7 (Coro7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62655708-S	ILMN_275081	CORO7	XM_001077234.1	XM_001077234.1		192276	109489609	XM_001077234.1	Coro7	XP_001077234.1	ILMN_1362544	0003870369	S	689	TGTAAGGACAAGCAACTTCGGATCTTTGACCCCAGAGCAAGAGCCCAGGC				10q12	PREDICTED: Rattus norvegicus coronin 7 (Coro7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62647790-S	ILMN_278954	RGD1562825_PREDICTED	XM_001076182.1	XM_001076182.1		500257	109473921	XM_001076182.1	RGD1562825_predicted	XP_001076182.1	ILMN_1352439	0006550446	S	1052	TCCAGGACATCAGCCCCTTCTACCAGCGTCGCCTCTTTGACCTCTATAAG				4q34	PREDICTED: Rattus norvegicus similar to carbohydrate (chondroitin 4) sulfotransferase 13 (predicted) (RGD1562825_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928941-S	ILMN_267329	PER2	NM_031678.1	NM_031678.1		63840	13928941	NM_031678.1	Per2	NP_113866.1	ILMN_1367467	0002570088	S	5588	AGCTCTCAGAGTTTGTGCGATGATTTGTGAGCCTTGCCGGACAAGCGGTT	9	-	90645464-90645513	9q36	Rattus norvegicus period homolog 2 (Drosophila) (Per2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	rPER2	rPER2
Rattus norvegicus	RefSeq	GI_62659381-S	ILMN_64997	LOC363991	XM_344144.2	XM_344144.2		363991	62659381	XM_344144.2	LOC363991	XP_344145.2	ILMN_1362872	0000940408	S	1217	CACCAAGTCGCACTCTGACTATTATGCGCCATCCCTGGGCCTTCCACAAG				13q13	PREDICTED: Rattus norvegicus similar to class II basic helix-loop-helix protein (LOC363991), mRNA.					
Rattus norvegicus	RefSeq	GI_21426772-S	ILMN_289122	LOC246266	NM_144750.1	NM_144750.1		246266	21426772	NM_144750.1	LOC246266	NP_653351.1	ILMN_1355386	0004610072	S	2175	CGGAAGACCTTGTTTCCAGGAAGTGCTCCTTGGCCCCCAACCTGTTGCAG	6	+	136928452-136928501	6q32	Rattus norvegicus lysophospholipase (LOC246266), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid [goid 6528] [evidence IDA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IMP]; Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IEA]; Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3 [goid 4067] [evidence IMP]; Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3 [goid 4067] [evidence IDA]; Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate [goid 4622] [evidence IMP]; Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate [goid 4622] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC112599	MGC112599
Rattus norvegicus	RefSeq	GI_62657221-S	ILMN_49618	RGD1307288_PREDICTED	XM_213490.4	XM_213490.4		287761	109489192	XM_213490.4	RGD1307288_predicted	XP_213490.2	ILMN_1364769	0003850739	S	654	AAGCCCTCACCAGGCTCTCTACTGCCACCTTGTGCCAGCTGTTCTGGAGT	10	+	95771817-95771866	10q32.1	PREDICTED: Rattus norvegicus similar to Protein C21orf58 (predicted) (RGD1307288_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662022-S	ILMN_51282	LOC502032	XM_577464.1	XM_577464.1		502032	62662022	XM_577464.1	LOC502032	XP_577464.1	ILMN_1357166	0005290136	S	503	CCCAGATCCGCACACACAGCCTGAAAATCCAGCGTACAAGGAGAAGAGGC				15q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC502032), mRNA.					
Rattus norvegicus	RefSeq	GI_62656101-S	ILMN_48479	LOC303155	XM_220442.3	XM_220442.3		303155	62656101	XM_220442.3	LOC303155	XP_220442.3	ILMN_1357133	0002450019	S	1410	GTGTGGAGTCAGCACAGCCATCTTTCCTCCCTTTCAAGCAGAGCACGACA				10q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9030624B09 (predicted) (LOC303155), mRNA.					
Rattus norvegicus	RefSeq	Rn.43070	ILMN_52718	RGD1311559_PREDICTED	XM_235398.4	XM_235398.4		315055	109480871	XM_235398.4	RGD1311559_predicted	XP_235398.4	ILMN_1530356	0001980369	S	4357	TATTGCTGACAGCCTCTACTGTAAAGTTACCTCACGTCACCCAGAAACTT	7	+	111274276-111274325	7q34	PREDICTED: Rattus norvegicus hypothetical LOC315055 (predicted) (RGD1311559_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652571-S	ILMN_52718	RGD1311559_PREDICTED	XM_235398.4	XM_235398.4		315055	109480871	XM_235398.4	RGD1311559_predicted	XP_235398.4	ILMN_1361069	0002370722	S	5295	TGCATGTGAAGATGCGGGTAAGGGCTTGACTGGTCTGCACCACTGCCTGC	7	+	111275214-111275263	7q34	PREDICTED: Rattus norvegicus hypothetical LOC315055 (predicted) (RGD1311559_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664233-S	ILMN_51479	DND1_PREDICTED	XM_226008.3	XM_226008.3		307492	62664233	XM_226008.3	Dnd1_predicted	XP_226008.3	ILMN_1351722	0006420601	S	2095	AGCAGTGACCCCTTCTTCCTACAGGCACCCTAATGGGTAAGCAGAGCCTG				18p11	PREDICTED: Rattus norvegicus dead end homolog 1 (zebrafish) (predicted) (Dnd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114251-S	ILMN_275795	V1RG15	NM_001008939.1	NM_001008939.1		494286	57114251	NM_001008939.1	V1rg15	NP_001008939.1	ILMN_1357999	0001660670	S	351	CCAAGCAATCACAATCAATTTGAGCCACTCCAGGTGGGCGAAGCTTGCAC	1	+	71825392-71825441	1q21	Rattus norvegicus vomeronasal 1 receptor, G15 (V1rg15), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717916-S	ILMN_55271	LOC367400	XM_346127.2	XM_346127.2		367400	62717916	XM_346127.2	LOC367400	XP_346128.2	ILMN_1366240	0003130021	S	271	GTTGTGAAGGCTACAAGGAGAGGGGTTACTTCAGCGAAGTTGGCATGAGG				Xq34	PREDICTED: Rattus norvegicus similar to ORF (LOC367400), mRNA.					
Rattus norvegicus	RefSeq	GI_62662423-S	ILMN_265490	FKBP8	NM_001037180.1	NM_001037180.1		290652	81295378	NM_001037180.1	Fkbp8	NP_001032257.1	ILMN_1360786	0006400736	S	1404	GGTCGCACACCCCAACAAGCAGGAAAGACTGAGACCCTGAAAGGGGGCAT	16	-	19402043-19402092	16p14	Rattus norvegicus FK506 binding protein 8, 38kDa (Fkbp8), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence ISS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC125185	MGC125185
Rattus norvegicus	RefSeq	GI_62660273-S	ILMN_282384	PPAT	XM_001076038.1	XM_001076038.1		117544	109500531	XM_001076038.1	Ppat	XP_001076038.1	ILMN_1373308	0002370725	S	3576	CATGCATTGTGTGTAATGGCGGCGTGGAGGGGTAAGGCCGTTAGGTCAGT				14p11	PREDICTED: Rattus norvegicus phosphoribosyl pyrophosphate amidotransferase (Ppat), mRNA.		The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine [goid 9113] [evidence IEA]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O [goid 4044] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576944-S	ILMN_277170	OLR250	NM_001001037.1	NM_001001037.1		405923	47576944	NM_001001037.1	Olr250	NP_001001037.1	ILMN_1353775	0000630368	S	852	GGTGGTCCCCATGTTGAACCCGCTCATCTACAGTCTCAGCAACAATGAGA	1	+	165544117-165544166	1q33	Rattus norvegicus olfactory receptor 250 (Olr250), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr250	Olr250
Rattus norvegicus	RefSeq	GI_62663684-S	ILMN_62800	ARMC4_PREDICTED	XM_225474.4	XM_225474.4		307036	109505074	XM_225474.4	Armc4_predicted	XP_225474.4	ILMN_1364578	0002630377	S	2666	TCAAAAACCCACACCCAGATGTGAAGGCCAGTGCAGCGTGGGCGCTCTGT	17	-	63868889-63868938	17q12.1	PREDICTED: Rattus norvegicus armadillo repeat containing 4 (predicted) (Armc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641888-S	ILMN_294012	MS4A12_PREDICTED	XM_001075172.1	XM_001075172.1		293741	109463577	XM_001075172.1	Ms4a12_predicted	XP_001075172.1	ILMN_1367036	0003190440	S	1090	CCATTACCCCACCACAGAGGAAAGACAAGAGGGCCGAAACCTAACTGCAG				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 12 (predicted) (Ms4a12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652226-S	ILMN_301430	TMEM5	NM_001024759.1	NM_001024759.1		299841	67078499	NM_001024759.1	Tmem5	NP_001019930.1	ILMN_1370250	0006860735	S	1272	ACACATCCAGTCAGCACAGCGCTCCTCTGCAGTTACTCAAGGCCATGGGG	7	-	61858142-61858191	7q22	Rattus norvegicus transmembrane protein 5 (Tmem5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078932-S	ILMN_289840	LINCR	NM_001014100.1	NM_001014100.1		316326	62078932	NM_001014100.1	Lincr	NP_001014122.1	ILMN_1372419	0006860537	S	1039	GCCAAAGGAGAAACCTCTGTCTGGATGTTCGGTCAGCAAGCCCAGCCGAG	9	-	35190704-35190753	9q21	Rattus norvegicus lung-inducible neuralized-related C3HC4 RING domain protein (Lincr), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577052	ILMN_295786	OLR774	NM_001000918.1	NM_001000918.1		405233	47577052	NM_001000918.1	Olr774	NP_001000918.1	ILMN_1650775	0002810427	S	778	TGGCCCCACCCTCACTCCCAGATAGACAAATTTCTTGCCTTTTTTGATGC	3	-	97376356-97376405	3q34	Rattus norvegicus olfactory receptor 774 (Olr774), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr774	Olr774
Rattus norvegicus	RefSeq	GI_62640800-S	ILMN_54789	AP3B2_PREDICTED	XM_218859.4	XM_218859.4		308777	109458917	XM_218859.4	Ap3b2_predicted	XP_218859.3	ILMN_1358361	0000730154	S	3432	TGACTAGTGGGAGTCTGGTCCTGCTGACTCTGGATGCCCGGGGAACTGGA	1	-	137672803-137672852	1q31	PREDICTED: Rattus norvegicus adaptor-related protein complex 3, beta 2 subunit (predicted) (Ap3b2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655671-S	ILMN_65610	LOC497663	XM_579619.1	XM_579619.1		497663	62655671	XM_579619.1	LOC497663	XP_579619.1	ILMN_1367148	0001410170	S	8042	GGCATCTCCAAGTATTACCCCTGGACGATAGGAATTGACTCCGGCGTGCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133381 (LOC497663), mRNA.					
Rattus norvegicus	RefSeq	GI_42627892-S	ILMN_263470	MUP5	NM_203325.1	NM_203325.1		298107	42627892	NM_203325.1	Mup5	NP_976070.1	ILMN_1355639	0006860451	S	692	CCATCTTGTGTCACAGAAAAGTGCAATCCTGGTCTCTCCAGCGTCTTCCC	5	-	78468212-78468261	5q24	Rattus norvegicus major urinary protein 5 (Mup5), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence NAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]	PGCL6	PGCL6
Rattus norvegicus	RefSeq	GI_62652569-S	ILMN_52633	CHRAC1_PREDICTED	XM_235400.4	XM_235400.4		315058	109480867	XM_235400.4	Chrac1_predicted	XP_235400.3	ILMN_1354675	0002450722	S	696	GCATTCGCTCTTTCAGTGGGAAGGACTAGACAGCAGCCTCCTCCACAGGC	7	+	110814623-110814672	7q34	PREDICTED: Rattus norvegicus chromatin accessibility complex 1 (predicted) (Chrac1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576088-S	ILMN_302885	OLR1406	NM_001000786.1	NM_001000786.1		405064	47576088	NM_001000786.1	Olr1406	NP_001000786.1	ILMN_1355182	0002190025	S	798	TGCAGTGGCCTCTGTCATCTTCACTGTGGTGACACCCATGGTCAACCCTT	10	+	36563537-36563586	10q22	Rattus norvegicus olfactory receptor 1406 (Olr1406), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1406	Olr1406
Rattus norvegicus	RefSeq	GI_62642908-S	ILMN_67309	LOC362315	XM_342631.2	XM_342631.2		362315	62642908	XM_342631.2	LOC362315	XP_342632.2	ILMN_1373694	0002350093	S	624	AAGCAGACACAGAAGGAACACCCATTCAGAGACTGCCCCACATGTGGCCC					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC362315), mRNA.					
Rattus norvegicus	RefSeq	GI_18426821-S	ILMN_271225	SERPINB7	NM_130404.1	NM_130404.1		117092	18426821	NM_130404.1	Serpinb7	NP_569088.1	ILMN_1373151	0005340167	S	897	CTTTGTTGAGTCCAGGGCTGATCTGTCTGGAATTGCCTCTGGAGGTCGTC	13	+	13506126-13506175	13p13	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B, member 7 (Serpinb7), mRNA.		The directed movement of acetylcholine into, out of, within or between cells. Acetylcholine is an acetic acid ester of the organic base choline and functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 15870] [evidence IDA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IDA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Megsin	Megsin
Rattus norvegicus	RefSeq	GI_62647285-S	ILMN_59619	LOC502770	XM_578268.1	XM_578268.1		502770	62647285	XM_578268.1	LOC502770	XP_578268.1	ILMN_1349457	0005130100	S	241	GGGTGGTGGACTTCATGGCCTACATGGCCTCCAAGAAGGAAGAAAGCCTG				4q24	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC502770), mRNA.					
Rattus norvegicus	RefSeq	GI_62657864-S	ILMN_58321	PVRL3_PREDICTED	XM_213626.4	XM_213626.4		288124	109493205	XM_213626.4	Pvrl3_predicted	XP_213626.4	ILMN_1352327	0003360435	S	2287	ACTGTGGCCATAAACTCAGTGAGTGTGATGTGTGCAAGAGCAGAAGTGGC	11	+	55888425-55888474	11q21	PREDICTED: Rattus norvegicus poliovirus receptor-related 3 (predicted) (Pvrl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542446-S	ILMN_298666	CYR61	NM_031327.2	NM_031327.2		83476	31542446	NM_031327.2	Cyr61	NP_112617.2	ILMN_1372919	0000070270	S	1769	GGGGACACTCTGTGAGTGCCCTTGAGGCTACTACCTGCACTCTAAACTGC	2	-	243824469-243824518	2q44	Rattus norvegicus cysteine-rich, angiogenic inducer, 61 (Cyr61), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence TAS]; Any process that activates or increases angiogenesis [goid 45766] [evidence TAS]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence TAS]	MGC93040	MGC93040
Rattus norvegicus	RefSeq	GI_62641497-A	ILMN_297529	HRASLS3	NM_017060.1	NM_017060.1		24913	8393561	NM_017060.1	Hrasls3	NP_058756.1	ILMN_1376347	0005360059	S	507	TCACTGGAGTGGGCTTGGCGGCCTTGGGCCTCATTGGAGTCATGCTCTCA	1	+	210315075-210315124	1q43	Rattus norvegicus HRAS like suppressor 3 (Hrasls3), mRNA.				Hrev107	Hrev107
Rattus norvegicus	RefSeq	GI_62666151	ILMN_60658	RGD1304770_PREDICTED	XM_228271.4	XM_228271.4		309810	109509600	XM_228271.4	RGD1304770_predicted	XP_228271.4	ILMN_1650866	0001240433	S	899	GGAAGAGCGAGGACCAGAAGGCTTTGAGCAGCATAAATGGAAACATGCAG	20	-	44097845-44097894	20q12	PREDICTED: Rattus norvegicus similar to Na+ dependent glucose transporter 1 (predicted) (RGD1304770_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648747-S	ILMN_61790	LOC500425	XM_575787.1	XM_575787.1		500425	62648747	XM_575787.1	LOC500425	XP_575787.1	ILMN_1360704	0002680692	S	722	GAGAGTGAAGACTACCAGCTCAAAGGACCATCCTCCAGCATCATGATCAG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC500425), mRNA.					
Rattus norvegicus	RefSeq	GI_56605737	ILMN_271086	RPO1-1	NM_001008330.1	NM_001008330.1		301246	56605737	NM_001008330.1	Rpo1-1	NP_001008331.1	ILMN_1650547	0002320369	S	1126	GGCTGCTCTTGGAGTTTGACCTTTTCCCAACTGCTCCGCTATGCCCGGTG	9	+	10302257-10302306	9q12	Rattus norvegicus RNA polymerase 1-1 (Rpo1-1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Polr1c; MGC105583; Ac2-127	Polr1c; MGC105583; Ac2-127
Rattus norvegicus	RefSeq	GI_62647947-A	ILMN_293841	DCIR2	NM_001005880.1	NM_001005880.1		297584	54312085	NM_001005880.1	Dcir2	NP_001005880.1	ILMN_1376382	0006650711	S	154	GCCAGGTTCCCGCTCACTGCTTTTTACATCCTTGATGGTATTTCTCCTGC	4	+	159515339-159515388	4q42	Rattus norvegicus dendritic cell inhibitory receptor 2 (Dcir2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663281-S	ILMN_284338	GADD45G	XM_001053888.1	XM_001053888.1		291005	109505494	XM_001053888.1	Gadd45g	XP_001053888.1	ILMN_1367453	0002480195	S	851	GAAGAACCGACCAGCGAGGCAGGTGTGACTCAGCAAGCAGCCTTCAGTGA				17p14	PREDICTED: Rattus norvegicus growth arrest and DNA-damage-inducible 45 gamma (Gadd45g), mRNA.		The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652125-S	ILMN_53219	LOC362880	XM_347085.2	XM_347085.2		362880	62652125	XM_347085.2	LOC362880	XP_347086.1	ILMN_1351381	0000060039	S	548	GTACCAGGAGTGGGGTGTTATGACCAGCCTGCCCGTGTTTCTTTGTGGAA					PREDICTED: Rattus norvegicus hypothetical LOC362880 (LOC362880), mRNA.					
Rattus norvegicus	RefSeq	GI_62666900-S	ILMN_293671	RGD1560330_PREDICTED	XR_007973.1	XR_007973.1		501571	109511891	XR_007973.1	RGD1560330_predicted		ILMN_1355893	0000380722	S	358	AGCATCACAGTCACAGCCTACAATCCCCTGGTCTACTCTCACAGGCCATG				Xq22	PREDICTED: Rattus norvegicus similar to LRRGT00057 (predicted) (RGD1560330_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870422-S	ILMN_301504	LOC683674	XM_001064018.1	XM_001064018.1		683674	109496498	XM_001064018.1	LOC683674	XP_001064018.1	ILMN_1371678	0007040725	S	301	CCCTTTTCAGCCCCCAAGGGAACAAAGCCGACGACAGCCGAATGAGCTTG					PREDICTED: Rattus norvegicus similar to Protein C7orf26 homolog (LOC683674), mRNA.					
Rattus norvegicus	RefSeq	GI_62661822-S	ILMN_62972	POU4F1	XM_341372.2	XM_341372.2		114503	62661822	XM_341372.2	Pou4f1	XP_341373.2	ILMN_1353913	0004230280	S	2502	CCCCATCAGAACCATTTCTGTGCGCCAACATACAACAGGGAGGTGTGTCC				15q22	PREDICTED: Rattus norvegicus POU domain, class 4, transcription factor 1 (Pou4f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence IEA]; Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence TAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The orderly movement of cells that will reside in the hindbrain [goid 21535] [evidence IEA]; The orderly movement of cells that will reside in the hindbrain [goid 21535] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the peripheral nervous system [goid 48934] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the peripheral nervous system [goid 48934] [evidence ISS]; The series of events during equilibrioception by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception plays an important role in the ability of an organism to perceive its orientation with respect to gravity [goid 51355] [evidence IEA]; The series of events during equilibrioception by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception plays an important role in the ability of an organism to perceive its orientation with respect to gravity [goid 51355] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642059-S	ILMN_49177	DMRT3_PREDICTED	XM_219926.4	XM_219926.4		293976	109459992	XM_219926.4	Dmrt3_predicted	XP_219926.4	ILMN_1352917	0003060215	S	2453	GCACTCAGGCTAGCTCGGACGGCACAGGCTCATATTTAAGCTCGGACAGT	1	+	229058447-229058496	1q51	PREDICTED: Rattus norvegicus doublesex and mab-3 related transcription factor 3 (predicted) (Dmrt3_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.22786	ILMN_160572	CAR14_PREDICTED	Rn.22786		Rn.22786		62643906	XM_342297	Car14_predicted		ILMN_1530429	0005390504	S	1434	GGAAAAAAGGGCTGCTAATAGGGTTTTAATTATTTTTTGCTCAATATATG					PREDICTED: Rattus norvegicus carbonic anhydrase 14 (predicted) (Car14_predicted),					
Rattus norvegicus	RefSeq	GI_31342543-S	ILMN_262721	SLC4A10	NM_178092.2	NM_178092.2		295645	31342543	NM_178092.2	Slc4a10	NP_835193.1	ILMN_1370516	0006290138	S	3232	AGCCATGGAGGACGAGGGCACAGTACAACTCCCACTGGAGGGACACTACA	3	+	44264332-44264381	3q21	Rattus norvegicus solute carrier family 4, sodium bicarbonate transporter-like, member 10 (Slc4a10), mRNA.	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	 [goid 15380] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090318-S	ILMN_268659	MAPRE3	NM_001007656.1	NM_001007656.1		298848	56090318	NM_001007656.1	Mapre3	NP_001007657.1	ILMN_1362964	0006620053	S	1512	AAGCTGAGGAGGCAGTGCTGTGGGTCCAGGGATCAGGGAGAGAGAAAGGA	6	-	25496533-25496582	6q14	Rattus norvegicus microtubule-associated protein, RP/EB family, member 3 (Mapre3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis [goid 30496] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]	MGC94312	MGC94312
Rattus norvegicus	RefSeq	GI_62655082-A	ILMN_288172	AOX3L1	NM_001008522.1	NM_001008522.1		316421	56606093	NM_001008522.1	Aox3l1	NP_001008522.1	ILMN_1376937	0000050402	S	4304	AGACAGAGTAAATGGTACTGCGGAAGGAGCAGAAAGGAGACCTGGTGTGC	9	+	57038888-57038897	9q31	Rattus norvegicus aldehyde oxidase 3-like 1 (Aox3l1), mRNA.			Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660472	ILMN_49795	LOC498365	XM_573599.1	XM_573599.1		498365	62660472	XM_573599.1	LOC498365	XP_573599.1	ILMN_1650942	0000380152	S	1583	TCTTGGGGGTGGGGAGAGAGAAAGGGATGTTTATGCTCCTGGGGGTAGCG				14p11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23235 (LOC498365), mRNA.					
Rattus norvegicus	RefSeq	GI_62657672-S	ILMN_61985	RGD1565360_PREDICTED	XM_221630.4	XM_221630.4		288240	109492943	XM_221630.4	RGD1565360_predicted	XP_221630.4	ILMN_1370872	0003610603	S	2501	GCACGCGCCTCGGGAGAGTAATTCTGTTTGCAGAAGTGACCTCTACGACC	11	-	34486518-34486567	11q11	PREDICTED: Rattus norvegicus similar to homolog of Human holocarboxylase synthetase gene HLCS (predicted) (RGD1565360_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640798-S	ILMN_54693	CPEB1_PREDICTED	XM_218858.4	XM_218858.4		293056	109458915	XM_218858.4	Cpeb1_predicted	XP_218858.3	ILMN_1366444	0000360048	S	2583	GGTTTGTCGCACCTTATGTTGCACTTACGTTGGGGGAGGGTTGATAGAAG	1	-	137556817-137556866	1q31	PREDICTED: Rattus norvegicus cytoplasmic polyadenylation element binding protein 1 (predicted) (Cpeb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648536-S	ILMN_278795	CPA6_PREDICTED	XM_001060173.1	XM_001060173.1		312913	109475963	XM_001060173.1	Cpa6_predicted	XP_001060173.1	ILMN_1364825	0000670452	S	1278	AGCTGTGAAGGCACTTCGGTCAGTGCACGGGATACGGTACAGACATGGCC				5q11	PREDICTED: Rattus norvegicus carboxypeptidase A6 (predicted) (Cpa6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665931-S	ILMN_266067	CXXC6_PREDICTED	XM_001080580.1	XM_001080580.1		309902	109510045	XM_001080580.1	Cxxc6_predicted	XP_001080580.1	ILMN_1365132	0006940014	S	5680	GGCTCAGTGCTGATTGAGTGTGCCCGGAAAGAGCTTCATGCTACCACCTC				20p11	PREDICTED: Rattus norvegicus CXXC finger 6 (predicted) (Cxxc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658731-S	ILMN_277222	RHBDL7_PREDICTED	XM_001077358.1	XM_001077358.1		360793	109497195	XM_001077358.1	Rhbdl7_predicted	XP_001077358.1	ILMN_1364635	0006900400	S	866	TCCACCTGGCTCCTACCCCACACAGGGTTGCCACACTCATCTGACTCCAA				12q12	PREDICTED: Rattus norvegicus rhomboid, veinlet-like 7 (Drosophila) (predicted) (Rhbdl7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654563-S	ILMN_276700	LOC300472	XM_001054836.1	XM_001054836.1		300472	109484421	XM_001054836.1	LOC300472	XP_001054836.1	ILMN_1348778	0002360563	S	3433	GGGTTCCCAAACCTGGGGTGCATAGGTACTAAACCAAGCAGTGCAACCTG					PREDICTED: Rattus norvegicus similar to Vacuolar protein sorting 26 homolog (VPS26 protein homolog) (LOC300472), mRNA.					
Rattus norvegicus	RefSeq	GI_34856129-S	ILMN_283393	HTATIP2_PREDICTED	XM_001080298.1	XM_001080298.1		292935	109462014	XM_001080298.1	Htatip2_predicted	XP_001080298.1	ILMN_1375028	0005130438	S	1227	CCAGTCTGGTCTCCTAGTGGCACAGTGCTGATGGTGCATGTAGCTGAGTG				1q22	PREDICTED: Rattus norvegicus HIV-1 tat interactive protein 2, homolog (human) (predicted) (Htatip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11968125-S	ILMN_289998	PPIB	NM_022536.1	NM_022536.1		64367	11968125	NM_022536.1	Ppib	NP_071981.1	ILMN_1370397	0005910035	S	517	GGAAGGCATGGATGTGGTACGGAAGGTGGAGAACACCAAGACGGACAGCC	8	+	70348333-70348342:70349009-70349048	8q24	Rattus norvegicus peptidylprolyl isomerase B (Ppib), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The directed movement of substances into, out of, or within the nucleus [goid 51169] [evidence TAS]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IEA]	Scylp; CypB	Scylp; CypB
Rattus norvegicus	RefSeq	GI_62664855-S	ILMN_65106	LOC368112	XM_577642.1	XM_577642.1		368112	62664855	XM_577642.1	LOC368112	XP_577642.1	ILMN_1375011	0000770280	S	838	GGAACCTGGGTGATGGCTACACATTCATCATTCACGAGCTACTTCTGCTC				19p13	PREDICTED: Rattus norvegicus similar to death effector domain-containing (LOC368112), mRNA.					
Rattus norvegicus	RefSeq	GI_62078874-S	ILMN_284624	ERRFI1	NM_001014071.1	NM_001014071.1		313729	62078874	NM_001014071.1	Errfi1	NP_001014093.1	ILMN_1366212	0006770037	S	2707	GATAAGCACAAAGAGAAGGTGCTTGCTAACAGAGGGACACCGCTGCCATG	5	+	168025688-168025737	5q36	Rattus norvegicus ERBB receptor feedback inhibitor 1 (Errfi1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1307599; Ralt; Xxx; gene 33	RGD1307599; Ralt; Xxx; gene 33
Rattus norvegicus	RefSeq	GI_57113826-S	ILMN_272593	V1RE22	NM_001008960.1	NM_001008960.1		494305	57113826	NM_001008960.1	V1re22	NP_001008960.1	ILMN_1373822	0000610647	S	823	TCTCTGTGTTTTCCTGTATTGGGTTCCTTTGTGGTGAGCCATAACCCTGA	1	-	58357085-58357134	1q12	Rattus norvegicus vomeronasal 1 receptor, E22 (V1re22), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19173741-S	ILMN_51305	TMLHE	NM_133387.2	NM_133387.2		170898	78187982	NM_133387.2	Tmlhe	NP_596878.2	ILMN_1356307	0003710750	S	1126	CAGGGCTGTCATCAACACTGTGCCTTACGACGTTGTCCGTCGTTGGTATG	20	+	55208-55257	20p12	Rattus norvegicus trimethyllysine hydroxylase, epsilon (Tmlhe), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence TAS]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence ISS]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence IEA]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of the reaction: N6,N6,N6-trimethyl-L-lysine + 2-oxoglutarate + O2 = 3-hydroxy-N6,N6,N6-trimethyl-L-lysine + succinate + CO2 [goid 50353] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Catalysis of the reaction: N6,N6,N6-trimethyl-L-lysine + 2-oxoglutarate + O2 = 3-hydroxy-N6,N6,N6-trimethyl-L-lysine + succinate + CO2 [goid 50353] [evidence IEA]	Tmlh; MGC94841	Tmlh; MGC94841
Rattus norvegicus	RefSeq	GI_62667284-S	ILMN_54047	WBP5_PREDICTED	XM_215278.4	XM_215278.4		294067	109511122	XM_215278.4	Wbp5_predicted	XP_215278.3	ILMN_1360900	0004780465	S	281	TGAGCCAAAGCCTGAGGAAGAGCCAAAGCCTGAGGAGAAGCCAGAGGAGG	X	+	123556130-123556179	Xq35	PREDICTED: Rattus norvegicus WW domain binding protein 5 (predicted) (Wbp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657770-S	ILMN_278605	CPOX	NM_001037095.1	NM_001037095.1		304024	79749364	NM_001037095.1	Cpox	NP_001032172.1	ILMN_1350718	0004210168	S	1093	GAGGCGTTCCGCTTTGTGAAGACGTGTGCCGAGGCAGTGGTTCCTTCCTA	11	-	42753481-42753530	11q12	Rattus norvegicus coproporphyrinogen oxidase (Cpox), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IDA]	The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O [goid 4109] [evidence IEA]; Catalysis of the reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O [goid 4109] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]	MGC124847	MGC124847
Rattus norvegicus	RefSeq	GI_50511325-S	ILMN_268003	MRGPRB13	NM_001002283.1	NM_001002283.1		404643	50511325	NM_001002283.1	Mrgprb13	NP_001002283.1	ILMN_1352027	0003710121	S	881	GGACTCTCAGGCTGCTACTGCACAGAGCCATGCAAGATATCCCTGAGGAA	1	-	98165641-98165690	1q22	Rattus norvegicus MAS-related GPR, member B13 (Mrgprb13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgB8	MrgB8
Rattus norvegicus	RefSeq	GI_62656956-A	ILMN_267840	KRT24	NM_001004131.1	NM_001004131.1		287675	51889725	NM_001004131.1	Krt24	NP_001004131.1	ILMN_1376642	0006620603	S	1375	CCCAGCAAGACGAGGGTAACGAAGACCATCATAGAGGAGGTGGTAGATGG				10q32.1	Rattus norvegicus keratin 24 (Krt24), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]	Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62661674-S	ILMN_55309	NKX2-6_PREDICTED	XM_344429.3	XM_344429.3		364418	109501841	XM_344429.3	Nkx2-6_predicted	XP_344430.3	ILMN_1370820	0004210746	S	850	CAGGGAGTCACGGCCTAGTGAAAAACCTGGGCTCACCTACCGACATCAGG	15	+	49715579-49715596:49715597-49715628	15p11	PREDICTED: Rattus norvegicus NK2 transcription factor related, locus 6 (Drosophila) (predicted) (Nkx2-6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718056-S	ILMN_272058	LOC501282	XR_007919.1	XR_007919.1		501282	109486622	XR_007919.1	LOC501282		ILMN_1365487	0006370497	S	13	AGCAGTGGCTTCTGGACTGCGCTGGTTCTGGCGGCCGCGGCGCTAAAGTT					PREDICTED: Rattus norvegicus similar to lymphocyte antigen 6 complex, locus E ligand (LOC501282), mRNA.		Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663963-A	ILMN_278121	MLLT10	NM_001012162.1	NM_001012162.1		361285	58865895	NM_001012162.1	Mllt10	NP_001012162.1	ILMN_1376910	0002570487	S	3210	ACCACCAACCCCTTCCTCACCATCCACGGGGACAGCACAAGCCAGAAAGT	17	+	92388456-92388505	17q12.3	Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (Mllt10), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576524	ILMN_283464	OLR1629	NM_001001015.1	NM_001001015.1		405389	47576524	NM_001001015.1	Olr1629	NP_001001015.1	ILMN_1650683	0004920037	S	666	GGTCACTGTCCAACGCCAGTCCTCTAGTGGGTCATCAAAAGCACTTTCTA	15	-	26543450-26543499	15p14	Rattus norvegicus olfactory receptor 1629 (Olr1629), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1629	Olr1629
Rattus norvegicus	RefSeq	GI_52345438-S	ILMN_274205	NXPH4	NM_021680.2	NM_021680.2		59316	52345438	NM_021680.2	Nxph4	NP_067712.2	ILMN_1361576	0001990309	S	1367	CTTCCTAACCTTGCTGAATCAAAAGTCCTGATGGGGGGCTCCGCCTGGCC	7	-	67502740-67502789	7q22	Rattus norvegicus neurexophilin 4 (Nxph4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			Nph4	Nph4
Rattus norvegicus	RefSeq	GI_62660115-S	ILMN_48400	LOC498329	XM_579817.1	XM_579817.1		498329	62660115	XM_579817.1	LOC498329	XP_579817.1	ILMN_1351360	0001400253	S	1252	ACTGTTTACTGCTTCTGCGGCCAACATCTCGTGTGTGGTCGGTCAGCCTG					PREDICTED: Rattus norvegicus LOC498329 (LOC498329), mRNA.					
Rattus norvegicus	RefSeq	GI_22538394	ILMN_288341	FXYD2	NM_017349.2	NM_017349.2		29639	22538394	NM_017349.2	Fxyd2	NP_059045.2	ILMN_1650783	0001940129	A	23	GCAGTGCCAAGGGGACGGAGAATCCCTTCGAGTATGACTATGAAACCGTC	8	+	48384031-48384066:48384353-48384366	8q22	Rattus norvegicus FXYD domain-containing ion transport regulator 2 (Fxyd2), transcript variant b, mRNA.	Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IMP]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IPI]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	GNAKATP; ATP1C; Atp1g1	GNAKATP; ATP1C; Atp1g1
Rattus norvegicus	RefSeq	GI_62718544-S	ILMN_67322	LOC501421	XM_576831.2	XM_576831.2		501421	109513744	XM_576831.2	LOC501421	XP_576831.2	ILMN_1359152	0002680390	S	771	CCAACATCCTGAATGAAAACAGCACTTGAGAGACAACTCGGGGGACCGCC	Un|NW_047912.1	-	111059-111094:111213-111226		PREDICTED: Rattus norvegicus hypothetical LOC501421 (LOC501421), mRNA.					
Rattus norvegicus	RefSeq	GI_62641873-S	ILMN_289860	RGD1306622_PREDICTED	XM_001074493.1	XM_001074493.1		293736	109463527	XM_001074493.1	RGD1306622_predicted	XP_001074493.1	ILMN_1355491	0004780739	S	3649	TGTGAGGAGGGAGGCTTTTTGCAGACGCTCCACAGCCATCAGGACACCCA				1q43	PREDICTED: Rattus norvegicus similar to KIAA0954 protein (predicted) (RGD1306622_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506816-S	ILMN_294497	INS2	NM_019130.1	NM_019130.1		24506	9506816	NM_019130.1	Ins2	NP_062003.1	ILMN_1361379	0005690152	S	141	ATTCTTCTACACACCCATGTCCCGCCGCGAAGTGGAGGACCCACAAGTGG	1	-	202935690-202935693:202936193-202936238	1q41	Rattus norvegicus insulin 2 (Ins2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A complex composed of RNA of the small nucleolar RNA (snoRNA) and protein, found in the nucleolus of a eukaryotic cell. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type [goid 5732] [evidence ISS]; A complex composed of RNA of the small nucleolar RNA (snoRNA) and protein, found in the nucleolus of a eukaryotic cell. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type [goid 5732] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response [goid 2674] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids [goid 6521] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; Any process that modulates the frequency, rate or extent of transmembrane transporter activity [goid 22898] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell [goid 32270] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]; Any process that stops or reduces the activity of the enzyme NAD(P)H oxidase [goid 33861] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen [goid 45818] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of glycolysis [goid 45821] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 45922] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence ISS]; Any process that increases the frequency, rate or extent of insulin receptor signaling [goid 46628] [evidence ISS]; The change in morphology and behavior of an alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 46631] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50709] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of fatty acid within an organism or cell [goid 55089] [evidence ISS]; Any process that decreases the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 60266] [evidence ISS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62078614-S	ILMN_289536	ALDOAL1	NM_001013943.1	NM_001013943.1		299052	62078614	NM_001013943.1	Aldoal1	NP_001013965.1	ILMN_1368275	0005860403	S	1399	GGCGTGGAGGCGGCAGGTATCACCTTTTTCAGGGTATGTCTGTAATACCG	6	+	75813414-75813463	6q23	Rattus norvegicus aldolase A-like 1 (Aldoal1), mRNA.		The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657663-S	ILMN_291900	DOPEY2_PREDICTED	XM_001055500.1	XM_001055500.1		304077	109494074	XM_001055500.1	Dopey2_predicted	XP_001055500.1	ILMN_1351692	0006180390	S	7018	CTGCAGCAACTGGAGGAGTGTGTGGAGCAGGACTTTCTGGAGTATCCGGA				11q11	PREDICTED: Rattus norvegicus dopey family member 2 (predicted) (Dopey2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646994-S	ILMN_68285	EXOC4	XM_342655.3	XM_342655.3		116654	109471898	XM_342655.3	Exoc4	XP_342656.3	ILMN_1360257	0001190176	S	2832	AGAGCTAGAGTACATCCATGCCCTGACCCTGCTGCACCGAAGCCAGACTG	4	+	61283551-61283600	4q22	PREDICTED: Rattus norvegicus exocyst complex component 4 (Exoc4), mRNA.	A protein complex peripherally associated with the plasma membrane that determines where secretory vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals [goid 145] [evidence IEA]; A protein complex peripherally associated with the plasma membrane that determines where secretory vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals [goid 145] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The process of directing proteins towards a membrane using signals contained within the protein [goid 6612] [evidence IMP]; The process by which vesicles are directed to specific destination membranes, mediated by microtubules that grow between molecules at the vesicle membrane and target membrane surfaces [goid 6903] [evidence TAS]; The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of a protein into, out of, within or between cells [goid 51223] [evidence IMP]; The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]		
Rattus norvegicus	RefSeq	Rn.24237	ILMN_267819	STAT2	NM_001011905.1	NM_001011905.1		288774	58865379	NM_001011905.1	Stat2	NP_001011905.1	ILMN_1530441	0006220551	S	2939	TATGGAACGATTTTAATGTTTTGATAATTGGCTAAGTTGGTATGAAGCAA	7	+	1580157-1580206	7q11	Rattus norvegicus signal transducer and activator of transcription 2 (Stat2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651639-A	ILMN_267819	STAT2	NM_001011905.1	NM_001011905.1		288774	58865379	NM_001011905.1	Stat2	NP_001011905.1	ILMN_1376440	0002900441	S	3036	CATCGCTATCCTGGGACCTGTCAAACCCAGAACCTTGCCCATGGTAGGCA	7	+	1580254-1580303	7q11	Rattus norvegicus signal transducer and activator of transcription 2 (Stat2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758225-S	ILMN_301240	PPP1R9B	NM_053474.1	NM_053474.1		84686	16758225	NM_053474.1	Ppp1r9b	NP_445926.1	ILMN_1372298	0003120670	S	4010	CCCCACGTTAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGAACCCT				10q31	Rattus norvegicus protein phosphatase 1, regulatory subunit 9B (Ppp1r9b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Neb2	Neb2
Rattus norvegicus	RefSeq	GI_8393179-S	ILMN_280411	COX4I1	NM_017202.1	NM_017202.1		29445	8393179	NM_017202.1	Cox4i1	NP_058898.1	ILMN_1372305	0000780504	S	503	GGCCATGCAGACCAAGCGGATGCTGGACATGAAGGTCAACCCCATTCAGG	19	+	51030007-51030056	19q12	Rattus norvegicus cytochrome c oxidase subunit IV isoform 1 (Cox4i1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cox4; Cox4a; MGC105470	Cox4; Cox4a; MGC105470
Rattus norvegicus	RefSeq	GI_27717710-S	ILMN_68047	RGD1564744_PREDICTED	XM_234961.2	XM_234961.2		314652	109480326	XM_234961.2	RGD1564744_predicted	XP_234961.1	ILMN_1373551	0005080100	S	149	CTGTCTCCGAGCTCACCTGCATCTACTCCGACCTTATCTTGCACGATGAG	7	+	16247057-16247106	7q12	PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P1 (predicted) (RGD1564744_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640680-A	ILMN_277365	SEC11A	NM_031723.2	NM_031723.2		65166	61889100	NM_031723.2	Sec11a	NP_113911.2	ILMN_1376568	0006370338	S	592	GTTTCTGCTGGGTTTATTTGTGCTGGTCCATCGTGAGTAAGAAGCCGGCC	1	-	137109794-137109843	1q31	Rattus norvegicus SEC11 homolog A (S. cerevisiae) (Sec11a), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]	Spc18	Spc18
Rattus norvegicus	RefSeq	GI_62642820-S	ILMN_62661	MAP1B	XM_215469.4	XM_215469.4		29456	109464279	XM_215469.4	Map1b	XP_215469.2	ILMN_1362692	0006620364	S	10310	GATCCACTGGCTGTGATTCCTACACAATCTGGCAGCACCATCCTGACCCC	2	-	30416741-30416790	2q12	PREDICTED: Rattus norvegicus microtubule-associated protein 1b (Map1b), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	A process that results in a parallel arrangement of microtubules [goid 1578] [evidence IEA]; A process that results in a parallel arrangement of microtubules [goid 1578] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IDA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27686982-S	ILMN_62661	MAP1B	XM_215469.4	XM_215469.4		29456	109464279	XM_215469.4	Map1b	XP_215469.2	ILMN_2040245	0005820594	S	7808	CGTGGAAGCCAGGCACTCGCACACCCAACTGACTTCTGCTAGGTATTGGC	2	-	30419243-30419292	2q12	PREDICTED: Rattus norvegicus microtubule-associated protein 1b (Map1b), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	A process that results in a parallel arrangement of microtubules [goid 1578] [evidence IEA]; A process that results in a parallel arrangement of microtubules [goid 1578] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IDA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_61556884-S	ILMN_276989	PLEKHA3	NM_001013077.1	NM_001013077.1		295674	61556884	NM_001013077.1	Plekha3	NP_001013095.1	ILMN_1365357	0002230091	S	1076	GCATCAGCAGCCATTCGGGAAGAAAGCAGACTTACGGCCAAGACACACTC	3	+	59396038-59396087	3q23	Rattus norvegicus pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 (Plekha3), mRNA.			Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [evidence IEA]; Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663022-A	ILMN_299415	SFTPD	NM_012878.1	NM_012878.1		25350	7949132	NM_012878.1	Sftpd	NP_037010.1	ILMN_1376503	0001450358	S	381	AAGGCCCCTCTGGGAAGCAGGGAAACATAGGACCCCAAGGCAAACCAGGT	16|NW_047478.1	-	41370-41419		Rattus norvegicus surfactant associated protein D (Sftpd), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence ISS]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; Any process that modulates the surface tension of a liquid. Surface tension is the property that makes a liquid behave as if it had an elastic skin on its surface at the interface with a gas or an immiscible liquid [goid 50828] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	SP-D; SPD	SP-D; SPD
Rattus norvegicus	RefSeq	GI_13929067-S	ILMN_292989	MCHR1	NM_031758.1	NM_031758.1		83567	13929067	NM_031758.1	Mchr1	NP_113946.1	ILMN_1360340	0006400047	S	1094	AGTCGCCTCCAAGTCAGGCCACCCCATCAAACCGTGGGGAGAGATACTGA	7	+	119559499-119559548	7q34	Rattus norvegicus melanin-concentrating hormone receptor 1 (Mchr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An immotile primary cilium that may be missing the central pair of microtubules, or the central pair of microtubules and outer dynein arms. Some primary cilia also have altered arrangements of outer microtubules (fewer than nine and/or not always present as doublets). Nonmotile primary cilia typically function as sensory organelles that concentrate and organize sensory signaling molecules [goid 31513] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IDA]; Combining with the cyclic peptide hormone melanin-concentrating hormone to initiate a change in cell activity [goid 30273] [evidence IDA]; Combining with the cyclic peptide hormone melanin-concentrating hormone to initiate a change in cell activity [goid 30273] [evidence IEA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IDA]	Slc1; Gpr24	Slc1; Gpr24
Rattus norvegicus	RefSeq	GI_56119163-S	ILMN_300002	N-PAC	NM_001007800.1	NM_001007800.1		360477	56119163	NM_001007800.1	N-pac	NP_001007801.1	ILMN_1374313	0003850112	S	1381	GGCCAGTCACAGCAGACACTCTTGGACATCCTCAATCAGGGACAATTGGC	10	+	10677281-10677330	10q12	Rattus norvegicus cytokine-like nuclear factor n-pac (N-pac), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses [goid 6098] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+ [goid 4616] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]	3930401k13rik; MGC94905	3930401k13rik; MGC94905
Rattus norvegicus	RefSeq	GI_62655527-S	ILMN_277037	RGD1561734_PREDICTED	XM_001054710.1	XM_001054710.1		501201	109487645	XM_001054710.1	RGD1561734_predicted	XP_001054710.1	ILMN_1352397	0004560373	S	1475	GTTCTCAGTCGGATGACCAGTCCAGCAGCAATAAGGGCTACACCCCCCTG				9q38	PREDICTED: Rattus norvegicus similar to KIAA1913 (predicted) (RGD1561734_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651424-S	ILMN_283453	RGD1562527_PREDICTED	XM_001062616.1	XM_001062616.1		500750	109480089	XM_001062616.1	RGD1562527_predicted	XP_001062616.1	ILMN_1370620	0004210592	S	525	CACCAGCGGCCAGATCATTGGGAGCCTTTTGGTGCTCTCTGTGCTGGAGA				6q33	PREDICTED: Rattus norvegicus RGD1562527 (predicted) (RGD1562527_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648395-S	ILMN_66596	LOC502893	XM_578395.1	XM_578395.1		502893	62648395	XM_578395.1	LOC502893	XP_578395.1	ILMN_1371847	0004280739	S	593	CCCTGGGGGAGATGCCAAATTGCCTGTGATCCTGTCTCCGAACACCTACC					PREDICTED: Rattus norvegicus similar to Probable polypeptide N-acetylgalactosaminyltransferase 8 (Protein-UDP acetylgalactosaminyltransferase 8) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 8) (Polypeptide GalNAc transferase 8) (GalNAc-T8) (pp-GaNTase 8)... (LOC502893), mRNA.					
Rattus norvegicus	RefSeq	GI_62650602-S	ILMN_68044	LOC497814	XM_579429.1	XM_579429.1		497814	62650602	XM_579429.1	LOC497814	XP_579429.1	ILMN_1352145	0004670594	S	5550	GGTAAGCGCGGTGGAGTCACACATCCATTCCCCTTTGTACACGTGACTTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019304 (LOC497814), mRNA.					
Rattus norvegicus	RefSeq	GI_47576286-S	ILMN_271564	OLR1288	NM_001000798.1	NM_001000798.1		405082	47576286	NM_001000798.1	Olr1288	NP_001000798.1	ILMN_1373071	0006380497	S	662	ATGTCTTCATTATTGCCACCATCCTCTACATTCACTCCAGCGAGGGGAAG	8	-	41528471-41528520	8q22	Rattus norvegicus olfactory receptor 1288 (Olr1288), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1288	Olr1288
Rattus norvegicus	RefSeq	GI_62652398-S	ILMN_67158	RPL38_PREDICTED	XM_345835.2	XM_345835.2		366919	62652398	XM_345835.2	Rpl38_predicted	XP_345836.2	ILMN_1372945	0001690093	S	854	CGGATGCATGGGAGTCACCATCTTGGAGCGGCCGGAGCCAATGGATCTTA					PREDICTED: Rattus norvegicus ribosomal protein L38 (predicted) (Rpl38_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653511-S	ILMN_56670	LOC302091	XM_229665.3	XM_229665.3		302091	62653511	XM_229665.3	LOC302091	XP_229665.3	ILMN_1369341	0003710168	S	4	CCAAGCAGACAGACGTAACGGAGGAAATTGAGAGAGTTCTTGGCATCCTC				8q21	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4b (LOC302091), mRNA.					
Rattus norvegicus	RefSeq	GI_41152507-S	ILMN_58993	P22K15	NM_199266.2	NM_199266.2		296229	73663903	NM_199266.2	P22k15	NP_954887.1	ILMN_1349745	0000050110	S	554	CTCTGGGACTGACTGGGCTGTTACCCACCACTTGCAGACGTTGATTCTAG	3	-	138330509-138330558	3q41	Rattus norvegicus cystatin related protein 2 (P22k15), mRNA.			 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661350-S	ILMN_53863	SALL2_PREDICTED	XM_223992.4	XM_223992.4		305854	109501556	XM_223992.4	Sall2_predicted	XP_223992.4	ILMN_1362246	0003870440	S	3813	ATGGCAGCCTTGTTCAAAGGGGCTGGCAACTGTCCATGGAAGGCCCAGCT	15	-	27763363-27763412	15p14	PREDICTED: Rattus norvegicus sal-like 2 (Drosophila) (predicted) (Sall2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12025519-S	ILMN_264743	HIST1H2AA	NM_021839.1	NM_021839.1		24828	12025519	NM_021839.1	Hist1h2aa	NP_068611.1	ILMN_1369793	0002900440	S	105	TCGCCAAGGGAACTACGCAGAGCGAATTGGGGCTGGCACACCAGTGTACT	17	-	48289766-48289815	17p11	Rattus norvegicus histone cluster 1, H2aa (Hist1h2aa), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Th2a	Th2a
Rattus norvegicus	RefSeq	GI_31342647-S	ILMN_296174	ORC1L	NM_177931.2	NM_177931.2		313479	31342647	NM_177931.2	Orc1l	NP_808792.1	ILMN_1365376	0000060592	S	2357	ACAGTCAGCATGTGGCTCTGTGCAGAATGGAGGGACTGCCTTACCCAACC	5	+	129901472-129901521	5q35	Rattus norvegicus origin recognition complex, subunit 1-like (yeast) (Orc1l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657193-S	ILMN_48481	METTL2_PREDICTED	XM_343972.3	XM_343972.3		363687	109489172	XM_343972.3	Mettl2_predicted	XP_343973.3	ILMN_1370775	0006110068	S	1457	GTGGAGTTCAAAGGACAACTTGCAGGGGTCGGTTCTCTCCTACCTGTTGG	10	+	94536324-94536373	10q32.1	PREDICTED: Rattus norvegicus methyltransferase like 2 (predicted) (Mettl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661116-S	ILMN_60371	LOC498451	XM_573710.1	XM_573710.1		498451	62661116	XM_573710.1	LOC498451	XP_573710.1	ILMN_1354328	0002100717	S	486	ACAAGAGTATTCCTTGCAGTGTAGCTGCAGGGGCAGTCGAGGCAGCTTTC					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20604 (LOC498451), mRNA.					
Rattus norvegicus	RefSeq	GI_62645524-S	ILMN_282139	TMEM16C_PREDICTED	XM_001080134.1	XM_001080134.1		311287	109470478	XM_001080134.1	Tmem16c_predicted	XP_001080134.1	ILMN_1353381	0003990050	S	4705	GCCTGAGAATCTAACGTCTTCCACTTGATCTGGGCATGGAGCTCAGTGGC				3q33-q34	PREDICTED: Rattus norvegicus transmembrane protein 16C (predicted) (Tmem16c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342661-S	ILMN_298957	SERPINF1	NM_177927.2	NM_177927.2		287526	31342661	NM_177927.2	Serpinf1	NP_808788.1	ILMN_1365894	0003170341	S	1100	GCTCACCCAAGTGGAACACAGGGCAGCTTTTGAGTGGAATGAGGAGGGGG	10	-	62713631-62713680	10q24	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade F, member 1 (Serpinf1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Dmrs91; Pedf	Dmrs91; Pedf
Rattus norvegicus	RefSeq	GI_62641551-S	ILMN_296334	DPYSL4	XM_001057768.1	XM_001057768.1		25417	109463110	XM_001057768.1	Dpysl4	XP_001057768.1	ILMN_1368477	0002760427	S	1742	GGCTGACGATCACATTGCCAGACGCACAGCTCAGAAGATCATGGCACCCC				1q41	PREDICTED: Rattus norvegicus dihydropyrimidinase-like 4 (Dpysl4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667587-S	ILMN_47965	LOC503486	XM_579041.1	XM_579041.1		503486	62667587	XM_579041.1	LOC503486	XP_579041.1	ILMN_1351760	0000380711	S	240	ACCAGGGGCAGAAGGCTGGAAGGTCTGGTCCTCAACAGCATTTGGAAGAA				Xq37	PREDICTED: Rattus norvegicus similar to tissue-nonspecific alkaline phosphatase (LOC503486), mRNA.					
Rattus norvegicus	RefSeq	GI_62078968-S	ILMN_287217	FKBP10	NM_001014120.1	NM_001014120.1		360627	62078968	NM_001014120.1	Fkbp10	NP_001014142.1	ILMN_1349017	0002230110	S	2452	CCTGCACTTGGTGCTAACCTGATGGGAGAAAGATGGGCAGAGTCTTGGAC	10	+	89366304-89366353	10q32.1	Rattus norvegicus FK506 binding protein 10 (Fkbp10), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_8393918-S	ILMN_69656	PCSK1	NM_017091.2	NM_017091.2		25204	77695924	NM_017091.2	Pcsk1	NP_058787.1	ILMN_1353032	0003840112	S	2307	TGAGGGTCTCTATGAAGCCCTGGAAAAGCTCAACAAGCCCTCCCAGCTTG	2	+	1967499-1967548	2q11	Rattus norvegicus proprotein convertase subtilisin/kexin type 1 (Pcsk1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence IMP]; The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide [goid 43043] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IPI]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IPI]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IPI]	PC3; PC1; BDP	PC3; PC1; BDP
Rattus norvegicus	RefSeq	GI_51854216-A	ILMN_266308	ABCG3L1	NM_001004076.2	NM_001004076.2		289453	70778848	NM_001004076.2	Abcg3l1	NP_001004076.2	ILMN_1376371	0000450020	S	1713	CAGGCTTCCTGCCTGTACTCTCGTGGATTCGGTACTTTAGCATTCCTCAT	14	-	6238789-6238838	14p22	Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 3-like 1 (Abcg3l1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	MGC114213	MGC114213
Rattus norvegicus	RefSeq	GI_62078622-S	ILMN_290342	RGD1304605	NM_001013947.1	NM_001013947.1		299944	62078622	NM_001013947.1	RGD1304605	NP_001013969.1	ILMN_1371326	0000070113	S	1554	CTGTGGAGTCCTACCCATAGTGGCAACAATCAACATCTACTTTCTGCCAG	7	-	93866821-93866870	7q32	Rattus norvegicus hypothetical LOC299944 (RGD1304605), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660027-S	ILMN_279665	RGD1560335_PREDICTED	XM_001060543.1	XM_001060543.1		305626	109500224	XM_001060543.1	RGD1560335_predicted	XP_001060543.1	ILMN_1371919	0005890041	S	3200	GCCGCGCTTGCTTCTGCTATGCACTGATTTGCTCTGTTCCAGTTGCCACG				14p22	PREDICTED: Rattus norvegicus similar to GPI7 (predicted) (RGD1560335_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640784-S	ILMN_54073	BLM_PREDICTED	XM_218837.4	XM_218837.4		308755	109458974	XM_218837.4	Blm_predicted	XP_218837.4	ILMN_1361497	0002260020	S	4141	GATCCCGCTCAGCCTCGTGTGCTTCTCAGGCAACATCAGCAGCCAGTAGA	1	-	136272477-136272526	1q31	PREDICTED: Rattus norvegicus Bloom syndrome homolog (human) (predicted) (Blm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649853-S	ILMN_276978	FUSIP1	NM_001025738.1	NM_001025738.1		362630	71043779	NM_001025738.1	Fusip1	NP_001020909.1	ILMN_1367144	0006110100	S	520	CAGTCCTAGAAACAGTAGACCGACTGGAAGACCACGGCGTAGCCGAAGCC	5	+	154644824-154644835:154645165-154645202	5q36	Rattus norvegicus FUS interacting protein (serine-arginine rich) 1 (Fusip1), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, or within the cytoplasm of a cell [goid 16482] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, or within the cytoplasm of a cell [goid 16482] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism [goid 48025] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism [goid 48025] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; An activity which assists splicing of substrate RNA(s) by facilitating the formation and stabilization of a series of catalytic conformations in which key RNA sequences are positioned for a series of two transesterification reactions which result in removal of the intron sequence and joining of two exons [goid 31202] [evidence IEA]; An activity which assists splicing of substrate RNA(s) by facilitating the formation and stabilization of a series of catalytic conformations in which key RNA sequences are positioned for a series of two transesterification reactions which result in removal of the intron sequence and joining of two exons [goid 31202] [evidence ISS]; An activity which assists splicing of substrate RNA(s) by facilitating the formation and stabilization of a series of catalytic conformations in which key RNA sequences are positioned for a series of two transesterification reactions which result in removal of the intron sequence and joining of two exons [goid 31202] [evidence ISS]	MGC112885	MGC112885
Rattus norvegicus	RefSeq	GI_6978887-S	ILMN_264746	GFRA1	NM_012959.1	NM_012959.1		25454	6978887	NM_012959.1	Gfra1	NP_037091.1	ILMN_1362117	0005670025	S	3293	TGAGCCCTGAAAGTATGACTGGCTTCTCACCCTCCCACAGAGCAGGGAGC	1	-	264614588-264614637	1q55	Rattus norvegicus GDNF family receptor alpha 1 (Gfra1), mRNA.	Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence TAS]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence TAS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61557394-S	ILMN_272800	PTTG1IP	NM_001013238.1	NM_001013238.1		365548	61557394	NM_001013238.1	Pttg1ip	NP_001013256.1	ILMN_1367251	0005050121	S	2156	AGCAGGGAGAGCAGCCACAGAACCAAGCCCATCACACCCAGTGCCTTAGT	20	-	11414711-11414760	20p12	Rattus norvegicus pituitary tumor-transforming 1 interacting protein (Pttg1ip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_56605795-S	ILMN_299690	RGD1310686	NM_001008360.1	NM_001008360.1		360480	56605795	NM_001008360.1	RGD1310686	NP_001008361.1	ILMN_1366519	0003060082	S	2298	AGGCTTCTGAGCCTGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCT	10	+	10913764-10913813	10q12	Rattus norvegicus similar to chromosome 16 open reading frame 5 (RGD1310686), mRNA.		A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence ISS]; A series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor [goid 33209] [evidence ISS]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the initiation of apoptosis (programmed cell death) [goid 42771] [evidence ISS]		MGC94589	MGC94589
Rattus norvegicus	RefSeq	GI_62643890-S	ILMN_70190	BNIPL_PREDICTED	XM_342294.2	XM_342294.2		361994	62643890	XM_342294.2	Bnipl_predicted	XP_342295.2	ILMN_1362096	0000050139	S	836	CCATACCTTGGACAGGAGGCTTCGGAAAAACCTTCGAGCCCTGGTGGTCG					PREDICTED: Rattus norvegicus BCL2/adenovirus E1B 19kD interacting protein like (predicted) (Bnipl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758305-S	ILMN_289705	IDI1	NM_053539.1	NM_053539.1		89784	16758305	NM_053539.1	Idi1	NP_445991.1	ILMN_1367519	0001740687	S	663	CCGGGGAGCTGGAAGAAAATGATGCCATGGGTGTCAAACGAGCAGCACAG	17	-	72560036-72560085	17q12.1	Rattus norvegicus isopentenyl-diphosphate delta isomerase 1 (Idi1), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence TAS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail [goid 16117] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the isomerization of isopentenyl diphosphate into dimethylallyl diphosphate [goid 4452] [evidence TAS]; Catalysis of the isomerization of isopentenyl diphosphate into dimethylallyl diphosphate [goid 4452] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	MGC108635	MGC108635
Rattus norvegicus	RefSeq	GI_57114259-S	ILMN_268713	V1RJ4	NM_001008944.1	NM_001008944.1		494290	57114259	NM_001008944.1	V1rj4	NP_001008944.1	ILMN_1358948	0005690397	S	493	TCAGATGGTTACTGTGTAAACAAGCAGTTTGGGAACCACAATACAGGGTC	1	+	73593627-73593676	1q21	Rattus norvegicus vomeronasal 1 receptor, J4 (V1rj4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663983-S	ILMN_280248	LOC682593	XM_001062202.1	XM_001062202.1		682593	109475979	XM_001062202.1	LOC682593	XP_001062202.1	ILMN_1373756	0007000132	S	2909	CTGCTTTTCAGTTTCTGGGCCACAGGCATGTACCAGGGTAGCCAGCTTGG					PREDICTED: Rattus norvegicus similar to acyl-Coenzyme A binding domain containing 5 (LOC682593), mRNA.					
Rattus norvegicus	RefSeq	GI_62648494-S	ILMN_280248	LOC682593	XM_001062202.1	XM_001062202.1		682593	109475979	XM_001062202.1	LOC682593	XP_001062202.1	ILMN_1351553	0004780338	S	1047	GGAGCAATTTGGACAAGAGGAGTATTACTTAGGTGGTGATCCTGCTCAGC					PREDICTED: Rattus norvegicus similar to acyl-Coenzyme A binding domain containing 5 (LOC682593), mRNA.					
Rattus norvegicus	RefSeq	GI_62651031-S	ILMN_66781	DPF3_PREDICTED	XM_238462.4	XM_238462.4		299186	109478450	XM_238462.4	Dpf3_predicted	XP_238462.4	ILMN_1363433	0006040070	S	1187	ACGGCTTTGATGAGGACGATTTGGAAGAGCCTCGCTCCTGTCGAGGACGC	6	-	107220931-107220980	6q24	PREDICTED: Rattus norvegicus D4, zinc and double PHD fingers, family 3 (predicted) (Dpf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11693167-S	ILMN_62822	GNG11	NM_022396.1	NM_022396.1		64199	11693167	NM_022396.1	Gng11	NP_071791.1	ILMN_1354189	0005690563	S	437	TCTCAGAGGAGAGCACCTGAGTGCAGTTATTGGATGAAGGCCTGGCTCTC				4q13	Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 11 (Gng11), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31342223-S	ILMN_274162	SSX2IP	NM_175597.2	NM_175597.2		308023	31342223	NM_175597.2	Ssx2ip	NP_783187.1	ILMN_1349734	0003290253	S	2712	GGGTGAAGGGACGGCTGATGAGGATATGGGAGACCTGGGTGGTGATCTTT	2	+	244638039-244638088	2q44	Rattus norvegicus synovial sarcoma, X breakpoint 2 interacting protein (Ssx2ip), mRNA.	An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence NAS]; Interacting selectively with actinin, any member of a family of proteins that crosslink F-actin [goid 42805] [evidence IPI]	ADIP	ADIP
Rattus norvegicus	RefSeq	GI_62645498-S	ILMN_268912	RCN1_PREDICTED	XM_001073225.1	XM_001073225.1		362182	109470326	XM_001073225.1	Rcn1_predicted	XP_001073225.1	ILMN_1354661	0004810435	S	2225	AGAAATGCAGTCCCTTCCTGGCTGTGAGGCTAGGGATCCAGATGTAGTGG				3q32	PREDICTED: Rattus norvegicus reticulocalbin 1 (predicted) (Rcn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454229-S	ILMN_294398	ATP6V1E1	NM_198745.1	NM_198745.1		297566	38454229	NM_198745.1	Atp6v1e1	NP_942040.1	ILMN_1374964	0000450358	S	871	CTGGTAATCAGTGGACACCCTCTACAGCTACTGCCCTTGGCTCAGTGTCA	4	-	157204148-157204197	4q42	Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit E1 (Atp6v1e1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence ISS]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	Atp6e; Atp6e2; P31; MGC72933; Vma4	Atp6e; Atp6e2; P31; MGC72933; Vma4
Rattus norvegicus	RefSeq	GI_62656946-S	ILMN_56319	SP2_MAPPED	XM_220916.4	XM_220916.4		303499	109488889	XM_220916.4	Sp2_mapped	XP_220916.4	ILMN_1349408	0003610390	S	1791	TCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCGGACAGCAA	10	-	85678893-85678901:85680142-85680182	10q31	PREDICTED: Rattus norvegicus Sp2 transcription factor (mapped) (Sp2_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62717740-S	ILMN_68116	LOC316856	XM_229366.3	XM_229366.3		316856	62717740	XM_229366.3	LOC316856	XP_229366.3	ILMN_1370149	0005700465	S	828	CACGAAGTCCAGTTCACTGAGAAGACTGTCATTGCCACAACCTCCCTGGG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC316856), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666657-S	ILMN_263720	PLS3	XM_001057425.1	XM_001057425.1		81748	109512452	XM_001057425.1	Pls3	XP_001057425.1	ILMN_1358347	0003940204	S	2068	ACCAACCTTACTCGCAGGTGCATGATTAGCAAGTCAGCTAGTCTCAGGTG				Xq14	PREDICTED: Rattus norvegicus plastin 3 (T-isoform) (Pls3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence IEP]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650268-S	ILMN_51351	LOC500609	XM_580091.1	XM_580091.1		500609	62650268	XM_580091.1	LOC500609	XP_580091.1	ILMN_1358437	0005670270	S	40	GTCAGTGTTAGGACACACGGTGAGGTTAGGAAAACAGTGAACACAATGGC					PREDICTED: Rattus norvegicus LOC500609 (LOC500609), mRNA.					
Rattus norvegicus	RefSeq	GI_62645363-S	ILMN_55178	ACTG_PREDICTED	XM_213540.3	XM_213540.3		287876	62645363	XM_213540.3	Actg_predicted	XP_213540.3	ILMN_1362269	0000840364	S	1498	GTCCCCAGGCTAGTGGATCTCTGTGAGCACCATGTAGTGATCTGTGCAGG				10q32.3	PREDICTED: Rattus norvegicus actin, gamma, cytoplasmic (predicted) (Actg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641601-S	ILMN_48609	RGD1560565_PREDICTED	XM_574586.2	XM_574586.2		499287	109459606	XM_574586.2	RGD1560565_predicted	XP_574586.2	ILMN_1368681	0001940369	S	948	CTGGGAACTGTATGAGTGGGATGAGGAAGAGGAAGAGATGGCCCTGGAGC	1	-	201307190-201307209:201307310-201307339	1q41	PREDICTED: Rattus norvegicus similar to Tumor protein p53 inducible protein 5 (predicted) (RGD1560565_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641599	ILMN_48609	RGD1560565_PREDICTED	XM_574586.2	XM_574586.2		499287	109459606	XM_574586.2	RGD1560565_predicted	XP_574586.2	ILMN_1650438	0003190070	S	2039	TCCAGGACCATGGCAGGATGGAAGGCCAAGAGAATGTGACTGTGTGCAGG	1	-	201298976-201298977:201299052-201299099	1q41	PREDICTED: Rattus norvegicus similar to Tumor protein p53 inducible protein 5 (predicted) (RGD1560565_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667227-S	ILMN_50943	LOC503461	XM_579014.1	XM_579014.1		503461	62667227	XM_579014.1	LOC503461	XP_579014.1	ILMN_1365136	0003840497	S	209	AGTGGCGGAGGTTGCCAAGGCTACTAGGAAGATGGTGTCCATGTCTGCCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC503461), mRNA.					
Rattus norvegicus	RefSeq	GI_58865441-A	ILMN_262610	BTBD1	XM_001067480.1	XM_001067480.1		293060	109462240	XM_001067480.1	Btbd1	XP_001067480.1	ILMN_1376965	0002360603	S	1178	ATGGCACCAAAGGACTGAAGAAAGTGGTGCATGAGACCCCTGCTGCAAGC				1q31	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 1 (Btbd1), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649849-S	ILMN_50707	RGD1559655_PREDICTED	XM_342947.3	XM_342947.3		362629	109475662	XM_342947.3	RGD1559655_predicted	XP_342948.3	ILMN_1365238	0006900487	S	1653	GACTCCCTTGTGTGTCCAAAGGATGAGGGTCCAGTGGCTGAGACTGAGGC	5	+	154526578-154526627	5q36	PREDICTED: Rattus norvegicus similar to interleukin-22 receptor alpha chain (predicted) (RGD1559655_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648166-S	ILMN_266443	RGD1562596_PREDICTED	XM_001065923.1	XM_001065923.1		362438	109474231	XM_001065923.1	RGD1562596_predicted	XP_001065923.1	ILMN_1352964	0000430411	S	4231	CAGCGGAGATGACCGAAGAAGAGACACCCAAGAAAACCACCCCCATCCGC				4q42	PREDICTED: Rattus norvegicus similar to mKIAA0159 protein (predicted) (RGD1562596_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393695-S	ILMN_286570	STMN1	NM_017166.1	NM_017166.1		29332	8393695	NM_017166.1	Stmn1	NP_058862.1	ILMN_1349419	0002030600	S	643	CCCGACCCCTTCCTAAATATCCAAAGACTGTACTGGCCAGTGTCATTTAC	5	+	153231673-153231722	5q36	Rattus norvegicus stathmin 1 (Stmn1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The removal of tubulin heterodimers from one or both ends of a microtubule [goid 7019] [evidence TAS]; The removal of tubulin heterodimers from one or both ends of a microtubule [goid 7019] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle [goid 7052] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule polymerization [goid 31115] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence IPI]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence ISS]	stathmin; PR22; PP17; OP18; Lap18; SMN; PP19; MGC72884; prosolin	stathmin; PR22; PP17; OP18; Lap18; SMN; PP19; MGC72884; prosolin
Rattus norvegicus	RefSeq	GI_62651728-S	ILMN_56579	RGD1564722_PREDICTED	XM_343160.3	XM_343160.3		362832	109480180	XM_343160.3	RGD1564722_predicted	XP_343161.2	ILMN_1363441	0004760463	S	762	GGCTGGGCCTGGGCAGGGAGATGGACTTTGTGTAAGATAGTGGGGAACTC	7	-	10517844-10517893	7q11	PREDICTED: Rattus norvegicus similar to C19orf36 protein (predicted) (RGD1564722_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659208-S	ILMN_52221	LOC501852	XM_577265.1	XM_577265.1		501852	62659208	XM_577265.1	LOC501852	XP_577265.1	ILMN_1361720	0001240184	S	145	CTGTTGCCTTAATTAGTGGCGTCTATGGACCTCTTCAGGGCGCTACCACC				13p11	PREDICTED: Rattus norvegicus similar to Nol5a_predicted protein (LOC501852), mRNA.					
Rattus norvegicus	RefSeq	GI_11068132-S	ILMN_292821	MCPT8	NM_021598.1	NM_021598.1		29269	11068132	NM_021598.1	Mcpt8	NP_067609.1	ILMN_1360988	0000610097	S	512	GGAAGGCCAGAAGTGTGAAGACATGTCCAGAAACTACAACGACTCCATCC	15	+	34410808-34410857	15p12	Rattus norvegicus mast cell protease 8 (Mcpt8), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	RMCP8	RMCP8
Rattus norvegicus	RefSeq	GI_62647070-S	ILMN_267372	RGD1563055_PREDICTED	XR_008344.1	XR_008344.1		502742	109473319	XR_008344.1	RGD1563055_predicted		ILMN_1361988	0004010377	S	222	CGCCTTCAAAGCTCTGCACACTGAGGCTTTCATGAGCTCCAGTCCTCCGG				4q22	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (predicted) (RGD1563055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32441277-S	ILMN_290219	CYP2D5	NM_173304.2	NM_173304.2		286963	32441277	NM_173304.2	Cyp2d5	NP_775426.1	ILMN_1349991	0005700348	S	1431	CGGCCGGACAGCCCCGGCCCAGCACCCTTGGCAACTTTGCTATTTCAGTT	7	-	120760543-120760592	7q34	Rattus norvegicus cytochrome P450, family 2, subfamily d, polypeptide 5 (Cyp2d5), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	MGC108540; Cyp2d10; Cyp2d5	MGC108540; Cyp2d10; Cyp2d5
Rattus norvegicus	RefSeq	GI_58866027-S	ILMN_279387	RNASE13	NM_001012231.1	NM_001012231.1		497194	58866027	NM_001012231.1	Rnase13	NP_001012231.1	ILMN_1355637	0004210398	S	132	CCCGAAGGGTTTCCACGGGTACTGTAATGGCCTCATGGCCTACGTGAGAG	15	-	27356058-27356107	15p14	Rattus norvegicus ribonuclease, RNase A family, 13 (non-active) (Rnase13), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27659255-S	ILMN_50658	LOC292030	XM_226489.1	XM_226489.1		292030	27659255	XM_226489.1	LOC292030	XP_226489.1	ILMN_1368314	0001980164	S	227	CGGTCCAGGCCACCCTAGCACCACGCTCTTCTACTTCTTTTTCACGTCCC					PREDICTED: Rattus norvegicus similar to snRNP core protein SMX5d (LOC292030), mRNA.					
Rattus norvegicus	RefSeq	GI_34851418-S	ILMN_49146	LOC361380	XM_346971.1	XM_346971.1		361380	34851418	XM_346971.1	LOC361380	XP_346972.1	ILMN_1351115	0003290632	S	617	CTTGGACAGGATGTTTGCCTGGTTGCTAAGGAGAGGCTGACGCCTGCGAG					PREDICTED: Rattus norvegicus hypothetical LOC361380 (LOC361380), mRNA.					
Rattus norvegicus	RefSeq	GI_62650659-S	ILMN_48017	PRKCM	XM_234108.4	XM_234108.4		85421	109478193	XM_234108.4	Prkcm	XP_234108.4	ILMN_1373671	0001170538	S	2727	AAAGCGATGACTCGAGGTGGGAACAGTATGCAGGCGAGCAGGGACTGCAG	6	-	70364236-70364285	6q22	PREDICTED: Rattus norvegicus protein kinase C, mu (Prkcm), mRNA.					
Rattus norvegicus	RefSeq	GI_62649309-S	ILMN_68204	SLC35D1_PREDICTED	XM_216462.4	XM_216462.4		298280	109475144	XM_216462.4	Slc35d1_predicted	XP_216462.3	ILMN_1357848	0003830242	S	709	TTCACAGGAGATGCACAAAAGGCAATGGAGTTTGAGGGCTGGGCCGACGC	5	-	124129539-124129568:124144415-124144434	5q34	PREDICTED: Rattus norvegicus solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 (predicted) (Slc35d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641103-S	ILMN_297911	RGD1562400_PREDICTED	XM_001076653.1	XM_001076653.1		499237	109462637	XM_001076653.1	RGD1562400_predicted	XP_001076653.1	ILMN_1372977	0003840609	S	698	CCACCAAGGGTCGACAAAAGGCATTTTCCACCTGCACCTCCCACCTCACG				1q33	PREDICTED: Rattus norvegicus similar to olfactory receptor MOR204-14 (predicted) (RGD1562400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640927-S	ILMN_273897	ALG8	NM_001034127.1	NM_001034127.1		293129	77628005	NM_001034127.1	Alg8	NP_001029299.1	ILMN_1374339	0000630037	S	1454	CCTCGTGGAAGCTGAAGTACCCCTTCATCCCTTTGCTGCTGACCTCGGTG	1	+	154627697-154627746	1q32	Rattus norvegicus asparagine-linked glycosylation 8 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) (Alg8), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Catalysis of the transfer of a mannose residue from GDP-mannose to an oligosaccharide, forming an alpha-1,3-linkage [goid 33] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC124750	MGC124750
Rattus norvegicus	RefSeq	GI_62651842-S	ILMN_62413	LOC500807	XM_576196.1	XM_576196.1		500807	62651842	XM_576196.1	LOC500807	XP_576196.1	ILMN_1373665	0001240398	S	390	CTGGGCTTTTGGGGCGGAGACGTTATCCACTTGATTTGGACTGGCTCCTG					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2-32k (LOC500807), mRNA.					
Rattus norvegicus	RefSeq	GI_16758283-S	ILMN_284917	SLC5A7	NM_053521.1	NM_053521.1		85426	16758283	NM_053521.1	Slc5a7	NP_445973.1	ILMN_1352660	0006840112	S	4450	GCTTGTAGCTGGAACGATATGTTAACAAGCTGTCAAATGCTCAGTGCCAA	9	+	165497-165546	9q11	Rattus norvegicus solute carrier family 5 (choline transporter), member 7 (Slc5a7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IEA]; The chemical reactions and pathways resulting in the formation of acetylcholine, the acetic acid ester of the organic base choline [goid 8292] [evidence ISS]; The chemical reactions and pathways resulting in the formation of acetylcholine, the acetic acid ester of the organic base choline [goid 8292] [evidence IMP]; The directed movement of choline into, out of, within or between cells. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 15871] [evidence ISS]; The directed movement of choline into, out of, within or between cells. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 15871] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: choline(out) + Na+(out) = choline(in) + Na+(in) [goid 5307] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: choline(out) + Na+(out) = choline(in) + Na+(in) [goid 5307] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Cht1	Cht1
Rattus norvegicus	RefSeq	GI_62658609-S	ILMN_264949	ACTL6B_PREDICTED	XM_001069085.1	XM_001069085.1		288563	109497056	XM_001069085.1	Actl6b_predicted	XP_001069085.1	ILMN_1365887	0000130066	S	1430	ATCCACAGCGTTGTAGGGAACAGCCAGAGGGGCGGTCTACCAGCCAGAAA				12q12	PREDICTED: Rattus norvegicus actin-like 6B (predicted) (Actl6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342641-S	ILMN_264908	IL1RAPL1	NM_177935.2	NM_177935.2		317553	31342641	NM_177935.2	Il1rapl1	NP_808796.1	ILMN_1350761	0002850402	S	1985	CAGCGGCCACAGACAAAGTCAAGCAGGGAGCCGAATCCAGATGAAGCCCA	X	-	73692392-73692441	Xq22	Rattus norvegicus interleukin 1 receptor accessory protein-like 1 (Il1rapl1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]	Il1rapl	Il1rapl
Rattus norvegicus	RefSeq	GI_13027447-S	ILMN_287333	ZFP354C	NM_023988.1	NM_023988.1		78972	13027447	NM_023988.1	Zfp354c	NP_076478.1	ILMN_1364264	0007100398	S	1141	ACTGGAGGACAGCTTTGCCAGTGCTTACAGTGTGGGAGAACCTTTACACG	10	-	36387702-36387751	10q22	Rattus norvegicus zinc finger protein 354C (Zfp354c), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Aj18; Znf354c; Zfn354c	Aj18; Znf354c; Zfn354c
Rattus norvegicus	RefSeq	GI_62647856-S	ILMN_63820	SLC25A26_PREDICTED	XM_342726.2	XM_342726.2		362403	62647856	XM_342726.2	Slc25a26_predicted	XP_342727.2	ILMN_1360703	0005360193	S	545	AGCTGTCTGTGGGGCTTTTGCAGGTGCGAGGGATCATACTGTGCTGGGGA				4q34	PREDICTED: Rattus norvegicus solute carrier family 25, member 26 (predicted) (Slc25a26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012363-A	ILMN_302894	RT1-T24-1	NM_001008858.1	NM_001008858.1		361787	57012363	NM_001008858.1	RT1-T24-1	NP_001008858.1	ILMN_1376693	0007000253	S	937	GTTATTGCTGTTTTCTTCAAGCTGTGGCCATCATTGCAGCTGTGGCCATC	20	+	2922672-2922721	20p12	Rattus norvegicus histocompatibility 2, T region locus 24 (RT1-T24-1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		H2-T24	H2-T24
Rattus norvegicus	RefSeq	GI_62645469-S	ILMN_275191	ELF5_PREDICTED	XM_001079426.1	XM_001079426.1		366142	109470397	XM_001079426.1	Elf5_predicted	XP_001079426.1	ILMN_1372312	0006620528	S	649	CTCCTGAAGAAAACTGTGGCATCTTGGAGTGGGAAGACAGGGAGCAGGGC				3q32	PREDICTED: Rattus norvegicus E74-like factor 5 (predicted) (Elf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648055-S	ILMN_50097	LOC362420	XM_342740.2	XM_342740.2		362420	62648055	XM_342740.2	LOC362420	XP_342741.2	ILMN_1351804	0004560440	S	995	GACCAAAGCTGTAGACCATCACCCAGTGACCAACCCTGTTGCCCTTGGAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9030407H20 (predicted) (LOC362420), mRNA.					
Rattus norvegicus	RefSeq	GI_62652717-I	ILMN_60533	GGA1_PREDICTED	XM_576308.1	XM_576308.1		300066	62652717	XM_576308.1	Gga1_predicted	XP_576308.1	ILMN_1375809	0002680494	S	10	TTCGGAGCGTTGTTCCGGAAGTGGTCACGGGTGTCTGCGTGACGCTAACT				7q34	PREDICTED: Rattus norvegicus golgi associated, gamma adaptin ear containing, ARF binding protein 1 (predicted) (Gga1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644146-S	ILMN_283092	DDX20	XM_001066705.1	XM_001066705.1		84473	109467341	XM_001066705.1	Ddx20	XP_001066705.1	ILMN_1368469	0000450017	S	2696	CGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCTACTGGGAC				2q34	PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 20, 103kD (Ddx20), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IDA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IPI]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IPI]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62666836-S	ILMN_51677	LOC302687	XM_228943.2	XM_228943.2		302687	62666836	XM_228943.2	LOC302687	XP_228943.2	ILMN_1364805	0004050519	S	1029	ATGAGGCAAATGGCCTTACTGGAGGCTCAGCGTACACCTGTGATTGACCC					PREDICTED: Rattus norvegicus similar to Sex comb on midleg-like protein 2 (LOC302687), mRNA.					
Rattus norvegicus	RefSeq	GI_62665048-S	ILMN_284344	DNAJB1_PREDICTED	XM_001069407.1	XM_001069407.1		361384	109508565	XM_001069407.1	Dnajb1_predicted	XP_001069407.1	ILMN_1369706	0001940692	S	2101	CCTGGGGAGGGAATGGATCTGTTCTTTGGAGCTAGCCTGGTGCTCTGACC				19q11	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 1 (predicted) (Dnajb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576654-S	ILMN_272822	OLR853	NM_001000398.1	NM_001000398.1		298038	47576654	NM_001000398.1	Olr853	NP_001000398.1	ILMN_1368021	0005910102	S	581	TGCTTGTCATGACAGTGGGCAGTATTGTTCTGTTGATGATTCCTCTGCTG	5	+	70400890-70400939	5q24	Rattus norvegicus olfactory receptor 853 (Olr853), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr853	Olr853
Rattus norvegicus	RefSeq	GI_62643322-S	ILMN_291500	USP13_PREDICTED	XM_001066621.1	XM_001066621.1		310306	109466501	XM_001066621.1	Usp13_predicted	XP_001066621.1	ILMN_1367025	0006860154	S	2285	ATGGGATTCCAGCGCAGTCAGGCGGTACAGGCTCTACAAGCCACGAACCA				2q25	PREDICTED: Rattus norvegicus ubiquitin specific protease 13 (isopeptidase T-3) (predicted) (Usp13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651459-S	ILMN_65159	LOC299279	XM_234496.3	XM_234496.3		299279	62651459	XM_234496.3	LOC299279	XP_234496.3	ILMN_1349936	0006550008	S	1344	CTTGGCCCACGTCTTGCACAGTTGGAGCCCTCTCTCGAAGCTGTCATTGC				6q32	PREDICTED: Rattus norvegicus similar to BC049975 protein (LOC299279), mRNA.					
Rattus norvegicus	RefSeq	GI_62647011-S	ILMN_69069	LOC312226	XM_231601.3	XM_231601.3		312226	62647011	XM_231601.3	LOC312226	XP_231601.3	ILMN_1368344	0002370600	S	1566	GTGGACGATGGGTCTGGGGTCTCCACTATTTCCCAGGAGGAATCAGGCTT				4q22	PREDICTED: Rattus norvegicus similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (LOC312226), mRNA.					
Rattus norvegicus	RefSeq	GI_62648086	ILMN_51536	RGD1562214_PREDICTED	XM_575654.2	XM_575654.2		500305	109472549	XM_575654.2	RGD1562214_predicted	XP_575654.2	ILMN_1650109	0005340446	S	1148	ACGAAGCCTATCTCTTCAGCGTGACACAAGCCGCCATGAGAAAAGCCACG	4	+	155533210-155533259	4q42	PREDICTED: Rattus norvegicus similar to decapping enzyme Dcp1b (predicted) (RGD1562214_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576940	ILMN_302247	OLR799	NM_001000854.1	NM_001000854.1		405144	47576940	NM_001000854.1	Olr799	NP_001000854.1	ILMN_1650891	0003850025	S	750	TGGCTACGGCTGCTGCTTGTTCCTCTATGTGAAACCCAAGCAGACCCAGG	4	+	68169472-68169521	4q22	Rattus norvegicus olfactory receptor 799 (Olr799), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr799	Olr799
Rattus norvegicus	RefSeq	GI_47577054-S	ILMN_291191	OLR29	NM_001000691.1	NM_001000691.1		404896	47577054	NM_001000691.1	Olr29	NP_001000691.1	ILMN_1357793	0004480025	S	402	GAGTAGTGGTAACTGTGTACTGATGGTAGGTGTTTCCTGGGCTACTGGGG	1	-	142820173-142820222	1q32	Rattus norvegicus olfactory receptor 29 (Olr29), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr29	Olr29
Rattus norvegicus	RefSeq	GI_47777715-S	ILMN_270349	OLR736	NM_001001384.1	NM_001001384.1		366118	47777715	NM_001001384.1	Olr736	NP_001001384.1	ILMN_1358910	0000580451	S	405	CCAACAGGTGTGTGCTGTCCTTGTAGGATCAGCTTGGATAGGAGGCTTTG	3	-	74580074-74580123	3q24	Rattus norvegicus olfactory receptor 736 (Olr736), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr736	Olr736
Rattus norvegicus	RefSeq	GI_62649623-S	ILMN_302428	DNALI1	NM_001031647.1	NM_001031647.1		298524	72255522	NM_001031647.1	Dnali1	NP_001026817.1	ILMN_1373816	0005390673	S	957	GGAAGGTGGTGGAACCCTGTCCATGTGTGGTTCATAAATTGGCTGGCCTG	5	-	144400400-144400449	5q36	Rattus norvegicus dynein, axonemal, light intermediate chain 1 (Dnali1), mRNA.	Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]	MGC116176	MGC116176
Rattus norvegicus	RefSeq	GI_62652427-S	ILMN_68817	RGD1561749_PREDICTED	XM_216934.4	XM_216934.4		299933	109480774	XM_216934.4	RGD1561749_predicted	XP_216934.3	ILMN_1356153	0005130446	S	937	CCTCGCTGAGTTTCAGGAAGTGTGGCAGCAGAGTGTTCCCGAGGGGATGA	7	-	91609081-91609130	7q31	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC5528 (predicted) (RGD1561749_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657321-S	ILMN_57502	RAB37_PREDICTED	XM_343983.2	XM_343983.2		363704	62657321	XM_343983.2	Rab37_predicted	XP_343984.2	ILMN_1349625	0005130390	S	495	TGGCCAGAGAGTATGGTGTTCCCTTCATGGAGACCAGTGCCAAGACTGGC					PREDICTED: Rattus norvegicus RAB37, member of RAS oncogene family (predicted) (Rab37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666400-S	ILMN_274028	RGD1560119_PREDICTED	XR_008328.1	XR_008328.1		298169	109512566	XR_008328.1	RGD1560119_predicted		ILMN_1366543	0001340110	S	1000	TGTGGATCAGCGAACAAGAGTATGACGAGTCGGGCCCCTCCATCGTCCAC				Xq11	PREDICTED: Rattus norvegicus similar to actin alpha 1 skeletal muscle protein (predicted) (RGD1560119_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718540-S	ILMN_276113	LOC501420	XM_580192.1	XM_580192.1		501420	62718540	XM_580192.1	LOC501420	XP_580192.1	ILMN_1352645	0000520088	S	2001	CACTTGAAGAAGTGCTGGGTGGGGAGGGTCTTCTGACCCGGTATGGGGAG	Un|NW_047912.1	+	68299-68348		PREDICTED: Rattus norvegicus hypothetical LOC501420 (LOC501420), mRNA.					
Rattus norvegicus	RefSeq	GI_62662375-S	ILMN_265123	RGD1561287_PREDICTED	XM_001063920.1	XM_001063920.1		498600	109503880	XM_001063920.1	RGD1561287_predicted	XP_001063920.1	ILMN_1353304	0000670044	S	944	GTGTGACCAGGGCCCAGTGCCAACAGACGTGGTGTAGTGGTGCAGATGCT				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510049I19 (predicted) (RGD1561287_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51491888-S	ILMN_299495	MAS1	NM_012757.2	NM_012757.2		25153	51491888	NM_012757.2	Mas1	NP_036889.1	ILMN_1350238	0006220541	S	1791	GACTCAGAGAACCTGGGGAGGCTGTGTGATGACTGCTGTGTGCTCCTAGG	1	+	42185543-42185592	1q11	Rattus norvegicus MAS1 oncogene (Mas1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with angiotensin to initiate a change in cell activity [goid 1595] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62655639-S	ILMN_279323	RGD1566405_PREDICTED	XM_001078518.1	XM_001078518.1		360467	109489666	XM_001078518.1	RGD1566405_predicted	XP_001078518.1	ILMN_1366327	0004210576	S	813	TGGCTCTCGTGATTGCTGGCATTTCCCTCCAAGCTGCGAACCTCTACGGC				10q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810036I24 (predicted) (RGD1566405_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41054819-S	ILMN_273755	CHRDL1	NM_199502.1	NM_199502.1		363455	41054819	NM_199502.1	Chrdl1	NP_955796.1	ILMN_1349973	0003060156	S	3624	CCCGTGCTAGATGATTCACTCACAAACCTTCCCGCCCAGGTGTTCTCTGA	X	+	35245881-35245930	Xq14	Rattus norvegicus kohjirin (Chrdl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IMP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IMP]		Kjr; Ng1; Neurogenesin-1	Kjr; Ng1; Neurogenesin-1
Rattus norvegicus	RefSeq	GI_62642269-S	ILMN_56381	RGD1559756_PREDICTED	XM_345031.3	XM_345031.3		365460	109460113	XM_345031.3	RGD1559756_predicted	XP_345032.3	ILMN_1363865	0003130128	S	2950	GCTCTACTCTCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCC	1	-	246261329-246261378	1q54	PREDICTED: Rattus norvegicus similar to tolloid-like-2 protein (predicted) (RGD1559756_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51591906-S	ILMN_265017	GK11	NM_001003977.1	NM_001003977.1		408242	51591906	NM_001003977.1	Gk11	NP_001003977.1	ILMN_1363895	0005220519	S	177	CACAGCTGCCCACTGCTATAGCTACCATGTTTTGTTGGGCCGAAACAATC	1	-	94448039-94448067:94448919-94448939	1q22	Rattus norvegicus glandular kallikrein 11 (Gk11), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Gk6; Klk6; Klk1c6; rGK-6	Gk6; Klk6; Klk1c6; rGK-6
Rattus norvegicus	RefSeq	GI_47576626-S	ILMN_272358	OLR1680	NM_001000891.1	NM_001000891.1		405192	47576626	NM_001000891.1	Olr1680	NP_001000891.1	ILMN_1370513	0001990520	S	248	CTAACCTTGGAGGCTCCACAAAGGCCATCAGTTACATGAGGTGTGCAGTT	20	-	275258-275307	20p12	Rattus norvegicus olfactory receptor 1680 (Olr1680), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1680	Olr1680
Rattus norvegicus	RefSeq	GI_62644275-S	ILMN_67740	BCAR3_PREDICTED	XM_227657.4	XM_227657.4		310838	109465514	XM_227657.4	Bcar3_predicted	XP_227657.4	ILMN_1369511	0005570408	S	2816	CCAGATCCTAACTGCCCTCTCACGGAAACTGGAACCTCCTTCTGGAAAGC	2	+	219187846-219187895	2q42	PREDICTED: Rattus norvegicus breast cancer anti-estrogen resistance 3 (predicted) (Bcar3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653334-S	ILMN_264612	RGD1308026_PREDICTED	XM_001074087.1	XM_001074087.1		363029	109484274	XM_001074087.1	RGD1308026_predicted	XP_001074087.1	ILMN_1356556	0002510440	S	1037	CATTGTTGTTGGGGGCTGGCAAGATGACTTAGGAGGTCAAGGGTCTTGGC				8q13	PREDICTED: Rattus norvegicus similar to 2310047B19Rik protein (predicted) (RGD1308026_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652424-S	ILMN_68641	COLEC10_PREDICTED	XM_235330.3	XM_235330.3		299928	109480772	XM_235330.3	Colec10_predicted	XP_235330.1	ILMN_1349356	0004670110	S	690	TGCAGAACTACAGCAACTGGAAGGAGGGGGAGCCTAGTGACCCCTATGGC	7	+	90843650-90843699	7q31	PREDICTED: Rattus norvegicus collectin sub-family member 10 (C-type lectin) (predicted) (Colec10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664464-S	ILMN_264662	RGD1311600_PREDICTED	XM_001057553.1	XM_001057553.1		307310	109507333	XM_001057553.1	RGD1311600_predicted	XP_001057553.1	ILMN_1373341	0002030273	S	836	CACTTGTGCCTTGCCCGAATTGTGGCCGGACCTTTGCTGTACACCGCCTA				18q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933409D10 (predicted) (RGD1311600_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666977-S	ILMN_287056	RGD1565651_PREDICTED	XR_007607.1	XR_007607.1		367804	109511820	XR_007607.1	RGD1565651_predicted		ILMN_1349620	0005700176	S	271	ATGAGTGGGGTAAAACCCAGGAGGCCAGGGAAGGAGGCCTTGGCCCGGAA				Xq22	PREDICTED: Rattus norvegicus similar to ferritin light chain - mouse (predicted) (RGD1565651_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929065-S	ILMN_279775	CPZ	NM_031766.1	NM_031766.1		83575	13929065	NM_031766.1	Cpz	NP_113954.1	ILMN_1352304	0005890520	S	1958	CATGGTGGTGGGCTTACTTCACATCCCTGAGTCCACACAAGCCACGCTGG	14	+	80880406-80880455	14q21	Rattus norvegicus carboxypeptidase Z (Cpz), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506890-S	ILMN_301819	SLC3A2	NM_019283.1	NM_019283.1		50567	9506890	NM_019283.1	Slc3a2	NP_062156.1	ILMN_1372377	0002360010	S	1700	GAGGGCACCTCCCTGAGCCTGGAAAACCTGAGCCTGAATCCTTATGAGGG	1	-	211376079-211376128	1q43	Rattus norvegicus solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (Slc3a2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence IMP]; The directed movement of tryptophan, 2-amino-3-(1H-indol-3-yl)propanoic acid, into, out of, within or between cells [goid 15827] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence IMP]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]	Mdu1	Mdu1
Rattus norvegicus	RefSeq	GI_62640925-S	ILMN_281320	RGD1559529_PREDICTED	XM_001064087.1	XM_001064087.1		499209	109462448	XM_001064087.1	RGD1559529_predicted	XP_001064087.1	ILMN_1359265	0003170091	S	704	GGCCTTTGTGGAGGAGGTGCTGAAGATCGCCCTGAGTGATGGATTCTGCA				1q32	PREDICTED: Rattus norvegicus similar to potassium channel tetramerisation domain containing 11 (predicted) (RGD1559529_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662539-S	ILMN_281117	RGD1559968_PREDICTED	XM_001070777.1	XM_001070777.1		306380	109504039	XM_001070777.1	RGD1559968_predicted	XP_001070777.1	ILMN_1353214	0002360673	S	3359	CTCCAGTCACTGCCAAGGTCAAGCGCAACGTCTCAGAGAGAAAGGACCAC				16p14	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a (predicted) (RGD1559968_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15559216-S	ILMN_300373	GATA2	NM_033442.1	NM_033442.1		25159	15559216	NM_033442.1	Gata2	NP_254277.1	ILMN_1357165	0000060673	S	3062	ATGTGTCCCAAGCTTCGATTCTGTGTGCGGTGGTGGCAGTGGTGCAGCAG	4	+	122288179-122288228	4q34	Rattus norvegicus GATA binding protein 2 (Gata2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IEA]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IDA]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IEA]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13027437-S	ILMN_287015	NPFFR2	NM_023980.1	NM_023980.1		78964	13027437	NM_023980.1	Npffr2	NP_076470.1	ILMN_2040157	0000270646	S	814	ATCAAGATGCTGCTGACTGTGGCCCTCCTTTTCATCCTTTCCTGGCTTCC	14	-	20042246-20042295	14p22	Rattus norvegicus neuropeptide FF receptor 2 (Npffr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence IEA]	Npff2; Npgpr; Gpr74	Npff2; Npgpr; Gpr74
Rattus norvegicus	RefSeq	GI_47576888-S	ILMN_273941	OLR809	NM_001000849.1	NM_001000849.1		405139	47576888	NM_001000849.1	Olr809	NP_001000849.1	ILMN_1365244	0005720088	S	756	AACAGCCATCTTTACATACATGAGGCCTGTGGGCAGATCCTCAGCAGGAC	4	+	70694131-70694180	4q23	Rattus norvegicus olfactory receptor 809 (Olr809), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr809	Olr809
Rattus norvegicus	RefSeq	GI_62658795-S	ILMN_70400	MRPS17_PREDICTED	XM_213762.4	XM_213762.4		288621	109495697	XM_213762.4	Mrps17_predicted	XP_213762.4	ILMN_1363698	0006200193	S	829	GAAGAGCTCAAGTCCTCCTGAACCTGGGGAAGAGGGAGCCAGAGGATGGA	12	+	27923287-27923307:27923308-27923336	12q13	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S17 (predicted) (Mrps17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758671-S	ILMN_298711	S100A8	NM_053822.1	NM_053822.1		116547	16758671	NM_053822.1	S100a8	NP_446274.1	ILMN_1350690	0006400288	S	239	GTTCCTTGCGTTGGTGATAAGGGTGGGCGTGGCAGCTCATAAAGACAGCC	2	+	182962397-182962446	2q34	Rattus norvegicus S100 calcium binding protein A8 (S100a8), mRNA.		The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Mrp8	Mrp8
Rattus norvegicus	RefSeq	GI_62644463-S	ILMN_269063	MTTP	XM_001076172.1	XM_001076172.1		310900	109467618	XM_001076172.1	Mttp	XP_001076172.1	ILMN_1353921	0004810184	S	3600	GGGGACCCCCTTGTAGCTATCATTTTCTCTATGCATCGGTTGCTGGGTGG				2q44	PREDICTED: Rattus norvegicus microsomal triglyceride transfer protein (Mttp), mRNA.	The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by a lipid bilayer [goid 31988] [evidence IDA]	The covalent or non-covalent attachment of lipid moieties to an amino acid in a protein [goid 6497] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IDA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence IPI]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEP]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IDA]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62655222-I	ILMN_50455	IHH	XM_576589.1	XM_576589.1		84399	62655222	XM_576589.1	Ihh	XP_576589.1	ILMN_1375526	0004920576	S	1159	GGCCCATGCAGAACAAGGCATGATGGGGCTAGGGACCAGAGTGTATCTAG				9q33	PREDICTED: Rattus norvegicus Indian hedgehog homolog, (Drosophila) (Ihh), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IDA]; The removal of an internal amino acid sequence (an intein) from a protein during protein maturation; the excision of inteins is precise and the N- and C-terminal exteins are joined by a normal peptide bond. Protein splicing involves 4 nucleophilic displacements by the 3 conserved splice junction residues [goid 16539] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation [goid 32332] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652058-S	ILMN_50107	TMTC3_PREDICTED	XM_235093.4	XM_235093.4		314785	109480525	XM_235093.4	Tmtc3_predicted	XP_235093.4	ILMN_1351619	0004200338	S	2775	GTCTCAGTCTAACAAGCAGTCAACAGGAAATGCAGACCAAGATGCCCCCC	7	-	38096245-38096294	7q13	PREDICTED: Rattus norvegicus transmembrane and tetratricopeptide repeat containing 3 (predicted) (Tmtc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647309-S	ILMN_60889	ZNRF1_PREDICTED	XM_342692.3	XM_342692.3		362367	109472081	XM_342692.3	Znrf1_predicted	XP_342693.3	ILMN_1350903	0005080132	S	4284	GCATACAGAGTGGCCCTGAGGCAAAGGCACCATGTGCTGCTTGCACGTCT	4	+	83359622-83359671	4q24	PREDICTED: Rattus norvegicus zinc and ring finger 1 (predicted) (Znrf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666441-S	ILMN_53252	LOC363439	XM_343759.2	XM_343759.2		363439	62666441	XM_343759.2	LOC363439	XP_343760.2	ILMN_1365293	0000060538	S	1816	TGGCCAGATGGATGGGTGTGACTGAAGCCATAGTGAAGAGATGGTTTCGG				Xq11	PREDICTED: Rattus norvegicus similar to testis expressed homeobox 2 (LOC363439), mRNA.					
Rattus norvegicus	RefSeq	GI_62658594-S	ILMN_279494	RGD1305455	XM_001067153.1	XM_001067153.1		288545	109496746	XM_001067153.1	RGD1305455	XP_001067153.1	ILMN_1363644	0005360050	S	1595	CTGAGGACGGGGCTCTTCGAGCTGAGCCAGCACATGAAACTGAAGCTCCA				12q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10925, transcript variant 2 (RGD1305455), mRNA.					
Rattus norvegicus	RefSeq	GI_62656915-S	ILMN_54736	RGD1560033_PREDICTED	XM_220919.4	XM_220919.4		287657	109488897	XM_220919.4	RGD1560033_predicted	XP_220919.3	ILMN_1349200	0002120546	S	6748	TTCCCCCCGGAAGGTGTGGGAGAACAAGAACCTTTGGAACCTGAGCCTGG	10	-	86062747-86062796	10q31	PREDICTED: Rattus norvegicus similar to GPR158-like 1 (predicted) (RGD1560033_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646779-I	ILMN_58112	AKAP9	XM_575357.1	XM_575357.1		246150	62646779	XM_575357.1	Akap9	XP_575357.1	ILMN_1375539	0004230575	S	4027	CATCCGGCCAAGAGGAAGAAATTGAGGCGGTGTTGGAAGGAAGAGACCTC				4q13	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein (yotiao) 9 (Akap9), mRNA.	A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IPI]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62644657-S	ILMN_285673	LOC365985	XM_001080050.1	XM_001080050.1		365985	109467785	XM_001080050.1	LOC365985	XP_001080050.1	ILMN_1374482	0004590139	S	2720	CTCCCTAACATACTGCAGATACCTGTGTCAAGGGCCTGCTCCATGGGCCC					PREDICTED: Rattus norvegicus similar to adenylate kinase 5 isoform 1 (LOC365985), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IEA]	Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate [goid 19205] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659743-S	ILMN_284961	RGD1561848_PREDICTED	XM_001055047.1	XM_001055047.1		498287	109499058	XM_001055047.1	RGD1561848_predicted	XP_001055047.1	ILMN_1363299	0006900309	S	1430	GGGCCCACACACATGCCCTGACAAATCATTTACTTAGACAGGCCTCCTGG				13q24	PREDICTED: Rattus norvegicus similar to lymphocyte antigen 108 isoform s (predicted) (RGD1561848_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242278-S	ILMN_274677	GJA3	NM_024376.1	NM_024376.1		79217	13242278	NM_024376.1	Gja3	NP_077352.1	ILMN_1364441	0006450270	S	1275	AAGGGGCTCACTGACAGCAGTGGCAGCAGCTTAGAGGAGAGTGCCTTGGT	15	-	36052809-36052858	15p12	Rattus norvegicus gap junction protein, alpha 3 (Gja3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_13540651-S	ILMN_289671	CXCL1	NM_030845.1	NM_030845.1		81503	13540651	NM_030845.1	Cxcl1	NP_110472.1	ILMN_1355237	0004920113	S	624	GTGCTAGAAGGTGTTGAGCGGGAAGAAGGGCGGAGAGATGAGAGTCTGGG	14	-	18690598-18690647	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (Cxcl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IDA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Gro1; CINC-1	Gro1; CINC-1
Rattus norvegicus	RefSeq	GI_24308483-S	ILMN_269980	SLC17A8	NM_153725.1	NM_153725.1		266767	24308483	NM_153725.1	Slc17a8	NP_714947.1	ILMN_1354999	0007050672	S	2892	GTTGGCCCACCCAAGGTTGTCCTCTCAGAGCCAAAGCTGAGACTGGCAGA	7	-	26361704-26361753	7q13	Rattus norvegicus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 (Slc17a8), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IDA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence ISS]; Enables the directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 5326] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Vglut3	Vglut3
Rattus norvegicus	RefSeq	GI_13786141-S	ILMN_269562	SLIT3	NM_031321.1	NM_031321.1		83467	13786141	NM_031321.1	Slit3	NP_112611.1	ILMN_1357807	0000110358	S	4745	AATGCTGCCAGCCGATTCGGAGCAAGCGGCGGAAATACGTCTTCCAGTGC	10	+	20576659-20576689	10q12	Rattus norvegicus slit homolog 3 (Drosophila) (Slit3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IMP]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IMP]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Megf5	Megf5
Rattus norvegicus	RefSeq	GI_47578092-S	ILMN_296387	OLR630	NM_001001059.1	NM_001001059.1		405947	47578092	NM_001001059.1	Olr630	NP_001001059.1	ILMN_1349508	0001400288	S	671	CAGCAGAGAGCCGTTCCAAAGCTCTTTCCACATGCGGTTCACATATAACC	3	-	72317962-72318011	3q24	Rattus norvegicus olfactory receptor 630 (Olr630), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr630	Olr630
Rattus norvegicus	RefSeq	GI_19924034-S	ILMN_271076	AKR1C18	NM_138510.1	NM_138510.1		171516	19924034	NM_138510.1	Akr1c18	NP_612519.1	ILMN_1362755	0005420040	S	1023	CAGCCCTAGCCATGAGTTCTGCTCGAAGCTCCTTTGTGTGATGCTCGACT	17	+	77286330-77286379	17q12.3	Rattus norvegicus aldo-keto reductase family 1, member C18 (Akr1c18), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 6709] [evidence ISS]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence ISS]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + 17-alpha,20-alpha-dihydroxypregn-4-en-3-one = NAD(P)H + H+ + 17-alpha-hydroxyprogesterone [goid 47006] [evidence IDA]; Catalysis of the reaction: NAD(P)+ + 17-alpha,20-alpha-dihydroxypregn-4-en-3-one = NAD(P)H + H+ + 17-alpha-hydroxyprogesterone [goid 47006] [evidence ISS]; Catalysis of the reaction: NAD(P)+ + 17-alpha,20-alpha-dihydroxypregn-4-en-3-one = NAD(P)H + H+ + 17-alpha-hydroxyprogesterone [goid 47006] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_34875050-S	ILMN_302301	RGD1560032_PREDICTED	XR_007408.1	XR_007408.1		290219	109502395	XR_007408.1	RGD1560032_predicted		ILMN_1364082	0001050092	S	150	CAAGAAAGGCCGGAAGAAGACCAAGGCCAACAATGCAAAGGCAGTCTGTG				15p13	PREDICTED: Rattus norvegicus similar to OTTMUSP00000000438 (predicted) (RGD1560032_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644524-S	ILMN_273106	LOC687191	XM_001077062.1	XM_001077062.1		687191	109467660	XM_001077062.1	LOC687191	XP_001077062.1	ILMN_1357430	0006040170	S	3580	CAGCCAGGACCCTCTGGATTGCCAGGACCTAAAGGAGAAAAGGGCTACCC					PREDICTED: Rattus norvegicus similar to collagen, type XXIV, alpha 1 (LOC687191), mRNA.					
Rattus norvegicus	RefSeq	GI_62646435-S	ILMN_62399	LOC366258	XM_575291.1	XM_575291.1		366258	62646435	XM_575291.1	LOC366258	XP_575291.1	ILMN_1371695	0006350673	S	442	CCCATGATGTAGACCCCATTGAGCTGGTTAACTCGGAAGACAAGGGTGCT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC366258), mRNA.					
Rattus norvegicus	RefSeq	GI_13540666-S	ILMN_282757	MIA1	XM_001077720.1	XM_001077720.1		81510	109461515	XM_001077720.1	Mia1	XP_001077720.1	ILMN_1368559	0002030168	S	120	CGGCTTTTCTGGGGAGGCAGTGTGCAGGGAGATTACTATGGAGACCTGGC				1q21	PREDICTED: Rattus norvegicus melanoma inhibitory activity 1 (Mia1), mRNA.					
Rattus norvegicus	RefSeq	GI_8393069-S	ILMN_283068	CD1D1	NM_017079.1	NM_017079.1		25109	8393069	NM_017079.1	Cd1d1	NP_058775.1	ILMN_1362642	0003450215	S	1667	CAAAGCTGCTGACTGATGATTACCCCAAAGGCTTCTTCCAGTGTGTGGTC	2	-	179011283-179011332	2q34	Rattus norvegicus CD1d1 molecule (Cd1d1), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45078] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-4 [goid 45404] [evidence ISS]; The process by which an antigen-presenting cell expresses lipid antigen of endogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family [goid 48006] [evidence ISS]; The process by which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family [goid 48007] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer T cell activation [goid 51135] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation [goid 51138] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an endogenous cellular lipid antigen [goid 30883] [evidence ISS]; Interacting selectively with an exogenous lipid antigen (examples include microbial lipids and glycolipids) [goid 30884] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Cd1; Cd1d	Cd1; Cd1d
Rattus norvegicus	RefSeq	GI_62652454-S	ILMN_266743	RGD1311362	NM_001025024.1	NM_001025024.1		362914	68163484	NM_001025024.1	RGD1311362	NP_001020195.1	ILMN_1365503	0007000053	S	686	CATGGACCCTGCAGTAGGATGGGGAGCTGTCTACACGCTGTCTGAGTTTG	7	+	94880094-94880143	7q33	Rattus norvegicus similar to hypothetical protein FLJ10204 (RGD1311362), mRNA.				MGC109256	MGC109256
Rattus norvegicus	RefSeq	GI_62641728-S	ILMN_275813	B3GNT6_PREDICTED	XM_001072516.1	XM_001072516.1		293667	109463359	XM_001072516.1	B3gnt6_predicted	XP_001072516.1	ILMN_1364399	0001090168	S	2160	CCGAGCTCCAAGGAGGAAAGGGTCTGTAGGTCCTGGGGGTTAAAAGTCCC				1q43	PREDICTED: Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (predicted) (B3gnt6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663710-S	ILMN_64401	LOC498772	XM_574058.1	XM_574058.1		498772	62663710	XM_574058.1	LOC498772	XP_574058.1	ILMN_1371100	0004210451	S	1779	CATTGCGTCACCCACAGAACCAGTCCTGAAGAACAGCAGCCTCAGCTCCC					PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC498772), mRNA.					
Rattus norvegicus	RefSeq	GI_38454287-S	ILMN_276242	P4HA3	NM_198775.1	NM_198775.1		361612	38454287	NM_198775.1	P4ha3	NP_942070.1	ILMN_1350336	0003190068	S	1422	ATCTGAGCTCCGTAGAAGCTGGAGGAGCCACAGCCTTTATCTATGGCAAC	1	+	157715971-157715972:157718592-157718639	1q32	Rattus norvegicus procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III (P4ha3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; An enzyme complex that catalyzes the formation of procollagen trans-4-hydroxy-L-proline and succinate from procollagen L-proline and 2-oxoglutarate, requiring Fe2+ and ascorbate [goid 16222] [evidence TAS]	The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence IMP]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657416-S	ILMN_268816	RGD1565046_PREDICTED	XR_009482.1	XR_009482.1		501741	109492190	XR_009482.1	RGD1565046_predicted		ILMN_1355983	0004050021	S	634	CCTTAGAGGTGCTCTGGGAGGCACGGCATTTGGCCCTGTCACGAATACCA				10q32.2	PREDICTED: Rattus norvegicus similar to CLM6 (predicted) (RGD1565046_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642958-S	ILMN_69845	LOC499533	XM_579976.1	XM_579976.1		499533	62642958	XM_579976.1	LOC499533	XP_579976.1	ILMN_1364568	0001240373	S	356	GCAGGGCACTTGCTGTAGTTTGGGAAAAGGGATTGGGCTTCAGTCTTCAG					PREDICTED: Rattus norvegicus LOC499533 (LOC499533), mRNA.					
Rattus norvegicus	RefSeq	GI_62717822-S	ILMN_50092	LOC503293	XM_578827.1	XM_578827.1		503293	62717822	XM_578827.1	LOC503293	XP_578827.1	ILMN_1350097	0001980494	S	1258	TGAGGTCACTGTCGAGAGGGGAAGGAGGAAAGGAGGGTGCGCTTGGCCAT					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC503293), mRNA.					
Rattus norvegicus	RefSeq	GI_47577826	ILMN_285882	OLR1213	NM_001000815.1	NM_001000815.1		405101	47577826	NM_001000815.1	Olr1213	NP_001000815.1	ILMN_1650181	0004610594	S	432	GTGCCATTTGATGATGGTGGGAGTGTATGTGATGGGGCTTGTGGGCGCCA	8	+	39592342-39592391	8q21	Rattus norvegicus olfactory receptor 1213 (Olr1213), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1213	Olr1213
Rattus norvegicus	RefSeq	GI_48675873-S	ILMN_283877	RCAN1	NM_153724.2	NM_153724.2		266766	48675873	NM_153724.2	Rcan1	NP_714946.2	ILMN_1370716	0004480093	S	1936	CAGAAGGTGGCTTCCCCTGAGGAGCAAATGGGTTGATGTTCTCCAAACCC	11	-	32386724-32386773	11q11	Rattus norvegicus regulator of calcineurin 1 (Rcan1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IMP]; Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein [goid 43666] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell differentiation [goid 51151] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the enzyme protein phosphatase 2B [goid 30346] [evidence TAS]	Mcip1	Mcip1
Rattus norvegicus	RefSeq	GI_56676345-S	ILMN_282479	LMCD1_PREDICTED	XM_001076072.1	XM_001076072.1		494021	109473961	XM_001076072.1	Lmcd1_predicted	XP_001076072.1	ILMN_1359800	0003780438	S	1363	TCTCGTGGACAAGGGATCTCTCCTGGGGGGAAAGGATGGGATTTCAACTC				4q42	PREDICTED: Rattus norvegicus LIM and cysteine-rich domains 1 (predicted) (Lmcd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642722-S	ILMN_58016	CKMT2	XM_574829.1	XM_574829.1		117001	62642722	XM_574829.1	Ckmt2	XP_574829.1	ILMN_1353001	0006420315	S	895	GTTGCGTGTTACGGATTTTGCATTCCTCGATAAGCGGAAGGGGGACGCCC					PREDICTED: Rattus norvegicus creatine kinase, mitochondrial 2, sarcomeric (Ckmt2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence TAS]	The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase [goid 46314] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence TAS]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13591958-S	ILMN_65822	GNRHR	NM_031038.1	NM_031038.1		81668	13591958	NM_031038.1	Gnrhr	NP_112300.1	ILMN_1367342	0006380040	S	2291	GGCACAGAGATATTACGCTCCCTCACTGCCCATAGGTCAGCAGCAGTAGC				14p21	Rattus norvegicus gonadotropin releasing hormone receptor (Gnrhr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with gonadotropin-releasing hormone to initiate a change in cell activity [goid 4968] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence IDA]	Lhrhr	Lhrhr
Rattus norvegicus	RefSeq	GI_18543332-S	ILMN_279922	SYCP2	NM_130735.1	NM_130735.1		83820	18543332	NM_130735.1	Sycp2	NP_570091.1	ILMN_1356374	0005130128	S	4251	GACTCAACAACATCTGTTGGCAATGGCCTGTCAAGCTCGGGGACACAGGG	3	-	167439649-167439651:167439750-167439796	3q43	Rattus norvegicus synaptonemal complex protein 2 (Sycp2), mRNA.	A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656354-S	ILMN_273336	PELP1	NM_001024270.2	NM_001024270.2		360552	76253844	NM_001024270.2	Pelp1	NP_001019441.2	ILMN_1366983	0001170739	S	3342	GATTGTCCCCCTGATGATGAGAAGCCACCACCTGCTACAGAGCCTGACTC	10	-	57220378-57220427	10q24	Rattus norvegicus proline, glutamic acid and leucine rich protein 1 (Pelp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	RGD1306320; MGC124791	RGD1306320; MGC124791
Rattus norvegicus	RefSeq	GI_62655580-S	ILMN_60087	MYH11	XM_573030.2	XM_573030.2		24582	109487679	XM_573030.2	Myh11	XP_573030.2	ILMN_1371040	0000070553	S	6020	CATTACCCCACCTCTCACCAGGAGTCAACCACAGCCCTGCACAAAGGATG	10	+	776152-776201	10q11	PREDICTED: Rattus norvegicus myosin, heavy polypeptide 11, smooth muscle (Myh11), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; A filament of myosin found in a muscle cell of any type [goid 5859] [evidence ISS]; Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The contractile fiber of smooth muscle cells [goid 30485] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]	A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence NAS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle fiber over time, from its formation to the mature structure [goid 48739] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence NAS]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646827-S	ILMN_270591	CALU	NM_001033898.1	NM_001033898.1		64366	76559924	NM_001033898.1	Calu	NP_001029070.1	ILMN_1350627	0002470520	S	1977	ACGATTTGGGCACCTTACGTGAAAGCATTGAACCTCCTGATACAGAGGGG	4	+	56254928-56254977	4q22	Rattus norvegicus calumenin (Calu), transcript variant 2, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IDA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644962-A	ILMN_301751	ZBTB43	NM_001012094.1	NM_001012094.1		311872	58865757	NM_001012094.1	Zbtb43	NP_001012094.1	ILMN_1376353	0002340041	S	4852	CTCTTAGGCCCCAGAACCATGGGATGGTAAGCAGATTGTTGTTAGGTGCG	3	-	12454393-12454442	3p11	Rattus norvegicus zinc finger and BTB domain containing 43 (Zbtb43), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643361-S	ILMN_293717	RGD1564029_PREDICTED	XR_008595.1	XR_008595.1		499598	109466527	XR_008595.1	RGD1564029_predicted		ILMN_1367831	0002510735	S	349	CAGCAAAGGCTGCTGGCCTGCACTAAGAAGAAAGCTGCTGGCAAAGGGGG				2q25	PREDICTED: Rattus norvegicus similar to Ribosomal protein L7a (predicted) (RGD1564029_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646180-S	ILMN_288733	LOC681732	XM_001058194.1	XM_001058194.1		681732	109470991	XM_001058194.1	LOC681732	XP_001058194.1	ILMN_1367844	0007000435	S	285	GAAGAGCCAGAATGACTTGACCAACTGTCCTGCAAAGGACCAGGATGGAC					PREDICTED: Rattus norvegicus similar to Cystatin S precursor (LM protein) (LOC681732), mRNA.					
Rattus norvegicus	RefSeq	GI_57012379	ILMN_291357	KB21	NM_001008814.1	NM_001008814.1		407761	57012379	NM_001008814.1	Kb21	NP_001008814.1	ILMN_1649938	0000840070	S	1522	GAAGGGACTCAGCCACTCGCTCACTTTGAAATGACCCTCACTCTTGGCCC	7	-	140208337-140208386	7q36	Rattus norvegicus type II keratin Kb21 (Kb21), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648447-S	ILMN_68890	LOC502922	XM_578423.1	XM_578423.1		502922	62648447	XM_578423.1	LOC502922	XP_578423.1	ILMN_1362670	0001340288	S	204	GGGACACAGCTCTCAGCTAAAGCACCTACTCATGAACGCGTGGTCAGCAG					PREDICTED: Rattus norvegicus similar to growth hormone-inducible soluble protein (LOC502922), mRNA.					
Rattus norvegicus	RefSeq	GI_62650956-S	ILMN_276683	RGD1562381_PREDICTED	XM_001080819.1	XM_001080819.1		314248	109479540	XM_001080819.1	RGD1562381_predicted	XP_001080819.1	ILMN_1356345	0004560131	S	24	GCCGCATTTGCACCAAGGCCATGAAGAAGGCGGCCTGGGTCATCATTGAG				6q24	PREDICTED: Rattus norvegicus similar to ribosomal protein S17 (predicted) (RGD1562381_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649255-S	ILMN_65595	HOOK1_PREDICTED	XM_233196.3	XM_233196.3		313370	62649255	XM_233196.3	Hook1_predicted	XP_233196.3	ILMN_1370987	0000670026	S	3831	GCTGAGTAAGGCAGATTGAGCTGGCAGGCTGTGGGGCTGTGGTCTACATC				5q33	PREDICTED: Rattus norvegicus hook homolog 1 (Drosophila) (predicted) (Hook1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079056-S	ILMN_287421	IL33	NM_001014166.1	NM_001014166.1		361749	62079056	NM_001014166.1	Il33	NP_001014188.1	ILMN_1367779	0002260632	S	2195	GTATACAATAGCCGGTGGGGTGTAGAACAAAAGAGGCCAGGAACCACCGT	1	+	233685546-233685595	1q52	Rattus norvegicus interleukin 33 (Il33), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]		Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	Rn.106849	ILMN_287421	IL33	NM_001014166.1	NM_001014166.1		361749	62079056	NM_001014166.1	Il33	NP_001014188.1	ILMN_1530360	0004280369	S	2075	TACTAAAGAAAGGTTTGTATTCAACCACGTAGTAATATTTCAAGCTACTA	1	+	233685426-233685475	1q52	Rattus norvegicus interleukin 33 (Il33), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]		Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56961648	ILMN_52012	MTPN	NM_024374.3	NM_024374.3		79215	62177140	NM_024374.3	Mtpn	NP_077350.1	ILMN_1649889	0006290347	S	967	CTGGGGGCTCCTGGCTGGTTAAGAGCGCTGCCTGCAGTTAGTGACCAAAA	4	-	62897066-62897115	4q22	Rattus norvegicus myotrophin (Mtpn), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]	The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IEP]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar granule cell. Differentiation includes the processes involved in commitment of a neuroblast to a granule cell fate. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21707] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence NAS]; The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage [goid 43403] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]	MGC108675; Gcdp	MGC108675; Gcdp
Rattus norvegicus	RefSeq	GI_6978680-S	ILMN_283051	COMT	NM_012531.1	NM_012531.1		24267	6978680	NM_012531.1	Comt	NP_036663.1	ILMN_1350513	0003130722	S	1146	CACCAGTTAGGCCCAGCAGGAAGTCAGCAAACTGTAAATGTCCAGACGCC	11	+	84581382-84581431	11q23	Rattus norvegicus catechol-O-methyltransferase (Comt), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence TAS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IMP]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IMP]; The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 8210] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 45963] [evidence IMP]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence TAS]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IMP]; The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs [goid 48609] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving homocysteine [goid 50668] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]; The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + a catechol = S-adenosyl-L-homocysteine + a guaiacol [goid 16206] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + a catechol = S-adenosyl-L-homocysteine + a guaiacol [goid 16206] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + a catechol = S-adenosyl-L-homocysteine + a guaiacol [goid 16206] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649621-S	ILMN_266335	GNL2	NM_001025736.1	NM_001025736.1		362593	71043773	NM_001025736.1	Gnl2	NP_001020907.1	ILMN_1358784	0007050008	S	2026	GCACCCACCAAAAGGGCAAGGAAGTGGAATGCACAGGTGGAAGAAGAGCC	5	+	144397415-144397415:144397978-144398026	5q36	Rattus norvegicus guanine nucleotide binding protein-like 2 (nucleolar) (Gnl2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC116342; RGD1305006	MGC116342; RGD1305006
Rattus norvegicus	RefSeq	GI_47576024-S	ILMN_275384	OLR143	NM_001000163.1	NM_001000163.1		293281	47576024	NM_001000163.1	Olr143	NP_001000163.1	ILMN_1350171	0005270110	S	757	GTGCCAATGATAGGGGTCTCTACAGTCCACCGTTTTGGGAAGCATGCTCC	1	+	161884203-161884252	1q32	Rattus norvegicus olfactory receptor 143 (Olr143), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr143	Olr143
Rattus norvegicus	RefSeq	GI_62664631-S	ILMN_51766	RGD1306734_PREDICTED	XM_344700.3	XM_344700.3		364899	109506792	XM_344700.3	RGD1306734_predicted	XP_344701.2	ILMN_1360032	0005420324	S	1458	TGCCTACCAGCAGCAGGCCCGAGAAGCAGAAAAGGAAGAGGAACGCCAAG	18	+	71151459-71151508	18q12.2	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32743 (predicted) (RGD1306734_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646446-S	ILMN_62936	LOC366255	XM_578192.1	XM_578192.1		366255	62646446	XM_578192.1	LOC366255	XP_578192.1	ILMN_1367168	0006420446	S	1534	CTCCTGGCACAGCCCACAGGGTAACAGGTTGGACACAACTAGGCCGCTAT					PREDICTED: Rattus norvegicus similar to N-acetyltransferase, homolog of S. cerevisiae ARD1 (LOC366255), mRNA.					
Rattus norvegicus	RefSeq	GI_13928991-S	ILMN_51122	RPS12	NM_031709.1	NM_031709.1		65139	13928991	NM_031709.1	Rps12	NP_113897.1	ILMN_1356995	0003130537	S	15	CCGCCAAGTTCCGCGGAGAAGCTCCGGGGTGCGTTCAAGATTCGGCGTCA				1p12	Rattus norvegicus ribosomal protein S12 (Rps12), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654948-S	ILMN_263981	NPAS2_PREDICTED	XM_001058630.1	XM_001058630.1		316351	109487014	XM_001058630.1	Npas2_predicted	XP_001058630.1	ILMN_1375226	0002510452	S	3061	CCAATGGAAAACGGGGTTGGCCGTGGGAGATGGGAAGAAGCGGTTGTGTG				9q21	PREDICTED: Rattus norvegicus neuronal PAS domain protein 2 (predicted) (Npas2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575855-S	ILMN_278032	SLC20A2	NM_017223.2	NM_017223.2		29502	47575855	NM_017223.2	Slc20a2	NP_058919.1	ILMN_1370678	0000380280	S	3452	AGCCGCTGTTCTCTTCTGATGGCGGCGGGAGAGCGTCGGTGTCACTAAAA				16q12.5	Rattus norvegicus solute carrier family 20 (phosphate transporter), member 2 (Slc20a2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; Any process by which an organism has an effect on an organism of a different species [goid 44419] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence IEA]	Ab1-188; Pit-2; Glvr2; Ram1	Ab1-188; Pit-2; Glvr2; Ram1
Rattus norvegicus	RefSeq	GI_62656504-S	ILMN_53148	LOC497947	XM_579761.1	XM_579761.1		497947	62656504	XM_579761.1	LOC497947	XP_579761.1	ILMN_1366476	0005420164	S	672	AGCATTTTAGAGGCTGTGGCAAGAGGACTGAGTGAGAGAGCAGCCAGGGC					PREDICTED: Rattus norvegicus LOC497947 (LOC497947), mRNA.					
Rattus norvegicus	RefSeq	GI_62658203-S	ILMN_55672	DGCR6_PREDICTED	XM_221270.4	XM_221270.4		303794	109493574	XM_221270.4	Dgcr6_predicted	XP_221270.2	ILMN_1367367	0000870435	S	723	TGATCTCTCTGAGGAGCTGACTAGACCCTGGCTATGCCCGCTGCCACCCA	11	-	84922875-84922924	11q23	PREDICTED: Rattus norvegicus DiGeorge syndrome critical region gene 6 (predicted) (Dgcr6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078524-S	ILMN_267956	RGD1311703	NM_001013898.1	NM_001013898.1		293160	62078524	NM_001013898.1	RGD1311703	NP_001013920.1	ILMN_1369155	0001500181	S	1107	GCCATGCTGCAGACCATTGATGACAGTCCCTGCTTGTTGAGTCTCTGCTC	1	+	174184741-174184790	1q34	Rattus norvegicus similar to sid2057p (RGD1311703), mRNA.				MGC109208	MGC109208
Rattus norvegicus	RefSeq	GI_62663659-S	ILMN_61464	LOC498763	XM_574049.1	XM_574049.1		498763	62663659	XM_574049.1	LOC498763	XP_574049.1	ILMN_1350265	0006520300	S	1717	CCCTCACAGGAAGTTTATTATCACCTCCCCACCCCCTCACAGGAAGTTTA					PREDICTED: Rattus norvegicus similar to CG32241-PA (LOC498763), mRNA.					
Rattus norvegicus	RefSeq	GI_62658762	ILMN_278693	WBSCR21	XM_001077591.1	XM_001077591.1		360831	109497211	XM_001077591.1	Wbscr21	XP_001077591.1	ILMN_1650975	0000430204	S	1	GGCGGAGCGTGCGCAGGAAGCACGTTTTGAGAGCTGTGAGAATGTTCTGC					PREDICTED: Rattus norvegicus Williams Beuren syndrome chromosome region 21 (Wbscr21), mRNA.					
Rattus norvegicus	RefSeq	GI_62650332-S	ILMN_54276	LOC503013	XM_578526.1	XM_578526.1		503013	62650332	XM_578526.1	LOC503013	XP_578526.1	ILMN_1373081	0004050129	S	0	ATGATTTACTCTGGTTGTGGGGTTGCCCCTGAGTTCAGGCCTTCCGAGAG					PREDICTED: Rattus norvegicus similar to neurofilament, heavy polypeptide 200kDa (LOC503013), mRNA.					
Rattus norvegicus	RefSeq	GI_27436862-S	ILMN_278336	HACL1	NM_053493.1	NM_053493.1		85255	27436862	NM_053493.1	Hacl1	NP_445945.1	ILMN_1350232	0004480576	S	1704	CAAACGCCAGAAGAGCTCCAAGACTCGCTGAGGCAGGCTCTGAAAGACAC	16	-	7075065-7075114	16p16	Rattus norvegicus 2-hydroxyacyl-CoA lyase 1 (Hacl1), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	Pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway [goid 1561] [evidence IEA]; Pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway [goid 1561] [evidence ISS]; Pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway [goid 1561] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence ISS]; Catalysis of the cleavage of C-C bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond [goid 16830] [evidence IEA]; Catalysis of the cleavage of C-C bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond [goid 16830] [evidence ISS]; Catalysis of the cleavage of C-C bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond [goid 16830] [evidence IDA]; Interacting selectively with thiamin pyrophosphate, the diphosphoric ester of thiamin. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases [goid 30976] [evidence IEA]; Interacting selectively with thiamin pyrophosphate, the diphosphoric ester of thiamin. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases [goid 30976] [evidence ISS]; Interacting selectively with thiamin pyrophosphate, the diphosphoric ester of thiamin. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases [goid 30976] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Hpcl2	Hpcl2
Rattus norvegicus	RefSeq	GI_62645878-S	ILMN_272478	RGD1309979_PREDICTED	XM_001081180.1	XM_001081180.1		296162	109470831	XM_001081180.1	RGD1309979_predicted	XP_001081180.1	ILMN_1359506	0003060609	S	1855	TGTGTGCACCATGTGCATGCCTCCAGAGTCCAGAAGAGGGCATGAGATCC				3q36	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 116 (predicted) (RGD1309979_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577274-S	ILMN_278804	OLR39	NM_001000128.1	NM_001000128.1		293198	47577274	NM_001000128.1	Olr39	NP_001000128.1	ILMN_1366037	0007000619	S	930	CTTCCAAAGGACTCAGCAACAGGTCTCCACTGAGAAGCCCCAGTCCCTGC	1	-	160073283-160073332	1q32	Rattus norvegicus olfactory receptor 39 (Olr39), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-160153279-160152290_ORF; Olr39	ratchr1-160153279-160152290_ORF; Olr39
Rattus norvegicus	RefSeq	GI_62655897-S	ILMN_60720	LOC302999	XM_220257.2	XM_220257.2		302999	62655897	XM_220257.2	LOC302999	XP_220257.2	ILMN_1354856	0001940551	S	2532	GGCCTGAGGGACATTTACAGCGAGGGTAGCTTTGATGACAGGAGCCGTGC				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A030007D23 gene (LOC302999), mRNA.					
Rattus norvegicus	RefSeq	GI_62658134-S	ILMN_51176	LOC287990	XM_221315.3	XM_221315.3		287990	62658134	XM_221315.3	LOC287990	XP_221315.3	ILMN_1358451	0006770309	S	7344	CCAGAGATCAGAGCAGACAGAAGTCAGGGCAGGCAAGCGGGGCAGGTGAA				11q23	PREDICTED: Rattus norvegicus similar to mKIAA0804 protein (predicted) (LOC287990), mRNA.					
Rattus norvegicus	RefSeq	GI_62648196-S	ILMN_57212	LOC500326	XM_575678.1	XM_575678.1		500326	62648196	XM_575678.1	LOC500326	XP_575678.1	ILMN_1357429	0003140110	S	28	AGATCAAGAGGGACATCAGCAGGAAGAAGCTGGAGCTGTTCACTAGCATC				4q42	PREDICTED: Rattus norvegicus similar to the first amino acid was determined to be isoleucine rather than methionine by comparison to mTEF1 (ascession # L13853); TEF-1-related factor (LOC500326), mRNA.					
Rattus norvegicus	RefSeq	GI_62657023-S	ILMN_61091	GJC1	XM_343965.3	XM_343965.3		363677	109488953	XM_343965.3	Gjc1	XP_343966.3	ILMN_1353027	0003130364	S	560	AGACGGTCTTCGTGGTCTTCTACTTCGCCGTCGGGCTGCTGTCGGCGCTG	10	-	87759517-87759566	10q31	PREDICTED: Rattus norvegicus gap junction membrane channel protein chi 1 (Gjc1), mRNA.					
Rattus norvegicus	RefSeq	GI_62659602-S	ILMN_58777	RGD1566064_PREDICTED	XM_341141.3	XM_341141.3		360865	109498087	XM_341141.3	RGD1566064_predicted	XP_341142.3	ILMN_1365042	0002510095	S	8530	GGGGCCCTTGTGGATCACTGTCTGGAGTCAGAGGCAATCAGGCCCAGGCT	13	-	78334771-78334820	13q22	PREDICTED: Rattus norvegicus similar to KIAA1096 protein (predicted) (RGD1566064_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575867-S	ILMN_289832	THBD	NM_031771.2	NM_031771.2		83580	47575867	NM_031771.2	Thbd	NP_113959.1	ILMN_1363727	0006660450	S	3100	GCCCTGGCCTATACACAAGAATTGGGACCTCCCTTGGGATCTGGCTAGAA	3	-	137159458-137159507	3q41	Rattus norvegicus thrombomodulin (Thbd), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654217-S	ILMN_68822	MRPL3_PREDICTED	XM_217239.4	XM_217239.4		300974	109483905	XM_217239.4	Mrpl3_predicted	XP_217239.4	ILMN_1357060	0003390113	S	1152	ATGAGAGCGTGTGGCAGCCCAGCGAACCTTCCATCACCTTTGCCTGATGC	8	+	110152950-110152996:110152997-110152999	8q32	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L3 (predicted) (Mrpl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664912-S	ILMN_274347	RGD1565975_PREDICTED	XM_001065138.1	XM_001065138.1		291903	109508489	XM_001065138.1	RGD1565975_predicted	XP_001065138.1	ILMN_1353482	0005270520	S	521	GGTGGAAGGAGGTGATTCAGAAGAGAGCGAGATTCAGTGGATGTGCCCGG				19p11	PREDICTED: Rattus norvegicus RGD1565975 (predicted) (RGD1565975_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638529-S	ILMN_54161	FNDC1_PREDICTED	XM_217792.3	XM_217792.3		308099	62638529	XM_217792.3	Fndc1_predicted	XP_217792.3	ILMN_1367977	0004010010	S	6280	CATCCAGCTCCAGCCACCTTGTCAAGGGCTTGCTCTTTGCAGCCACACTT				1q11	PREDICTED: Rattus norvegicus fibronectin type III domain containing 1 (predicted) (Fndc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138616-S	ILMN_301931	YME1L1	NM_053682.2	NM_053682.2		114217	52138616	NM_053682.2	Yme1l1	NP_446134.2	ILMN_1349005	0004050110	S	2360	CCTACAGTCTCCTTTGCAACACTTCCAACCCCCACTTCTGACTTGGTATC	17	+	96796065-96796114	17q12.3	Rattus norvegicus YME1-like 1 (S. cerevisiae) (Yme1l1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC93290; FtsH1	MGC93290; FtsH1
Rattus norvegicus	RefSeq	GI_62644325-S	ILMN_270613	RGD1305326_PREDICTED	XM_001076863.1	XM_001076863.1		295462	109467635	XM_001076863.1	RGD1305326_predicted	XP_001076863.1	ILMN_1359977	0000070047	S	1151	AGCTAAAGGAGGACCTGGCTGAGGCTACAGAATCCCTGGAGAACGTGCGC				2q43	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20647 (predicted) (RGD1305326_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646231-S	ILMN_51719	LOC499932	XM_575277.1	XM_575277.1		499932	62646231	XM_575277.1	LOC499932	XP_575277.1	ILMN_1352788	0003170398	S	764	TTCTTTTGGCTCCAGGGCTACGCTCCAGGCACTAGATGCAGCGGCCCAAG					PREDICTED: Rattus norvegicus similar to N-myc downstream regulated gene 3 (LOC499932), mRNA.					
Rattus norvegicus	RefSeq	GI_9910119-S	ILMN_264605	ADAM2	NM_020077.1	NM_020077.1		56806	9910119	NM_020077.1	Adam2	NP_064462.1	ILMN_1368097	0005290332	S	2053	GTGCCTACCGCTCCAAGTCTGCAAGGTGGCCATTTTTCCTGATCATCCCT	15	-	45451676-45451725	15p12	Rattus norvegicus ADAM metallopeptidase domain 2 (Adam2), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence NAS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	PH-30; Ftnb	PH-30; Ftnb
Rattus norvegicus	RefSeq	GI_9507056-S	ILMN_295677	RNF4	NM_019182.1	NM_019182.1		29274	9507056	NM_019182.1	Rnf4	NP_062055.1	ILMN_2039579	0006220328	S	1477	GGGAGCAGTGCCCATCCCACCCCATCTCTATTCACCAACTGTTCTCAGGA	14	-	82091378-82091427	14q21	Rattus norvegicus ring finger protein 4 (Rnf4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IMP]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence TAS]; Initiates or upregulates transcription in the presence of zinc [goid 42156] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an androgen receptor [goid 50681] [evidence IPI]	MGC72476	MGC72476
Rattus norvegicus	RefSeq	GI_62657898-S	ILMN_270690	RGD1560903_PREDICTED	XR_008500.1	XR_008500.1		363786	109494405	XR_008500.1	RGD1560903_predicted		ILMN_1351040	0005690458	S	428	GAGCCACCTAGAGAAGCCCACTTTGTGGGACTAACGGAAAGGAGCCTAGG				11q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1560903_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576496-S	ILMN_287945	OLR881	NM_001000056.1	NM_001000056.1		288792	47576496	NM_001000056.1	Olr881	NP_001000056.1	ILMN_1371332	0000430520	S	416	GACTCCTTCTTTGCTGTTGGATAGCTGGGGTAATCATCATACTGCCTCCC	7	-	2563432-2563481	7q11	Rattus norvegicus olfactory receptor 881 (Olr881), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr881	Olr881
Rattus norvegicus	RefSeq	GI_62657029-S	ILMN_281563	RGD1560383_PREDICTED	XM_001081416.1	XM_001081416.1		497994	109491831	XM_001081416.1	RGD1560383_predicted	XP_001081416.1	ILMN_1373387	0002810273	S	693	CAGTGACCAAACAGGCAGTGGTGAATGGAGACGTGGCGAAGGAGAGTGCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330509G02 (predicted) (RGD1560383_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650135-S	ILMN_65064	LOC366514	XM_345612.2	XM_345612.2		366514	62650135	XM_345612.2	LOC366514	XP_345613.2	ILMN_1357453	0003190008	S	1076	CTTCATGTCCTCAAATCACTGGGACAGGGAAACAGTCCAGGATGCAGACG					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG07099 (LOC366514), mRNA.					
Rattus norvegicus	RefSeq	GI_62656533-S	ILMN_54646	HIC1_PREDICTED	XM_220706.4	XM_220706.4		303310	109488526	XM_220706.4	Hic1_predicted	XP_220706.4	ILMN_1371722	0004280341	S	2355	CCTCTACCCGCTGGCCAAATTCACTGCAGAGCTAGGACTCAGCCCGGATA	10	-	62471642-62471691	10q24	PREDICTED: Rattus norvegicus hypermethylated in cancer 1 (predicted) (Hic1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660315-S	ILMN_279175	UGT2B10_PREDICTED	XM_001074665.1	XM_001074665.1		305264	109500495	XM_001074665.1	Ugt2b10_predicted	XP_001074665.1	ILMN_1366231	0004610056	S	1375	GAATCCACCACGATCAGCCAGTGAAACCTCTGGATAGAGCCGTCTTCTGG				14p21	PREDICTED: Rattus norvegicus UDP glycosyltransferase 2 family, polypeptide B10 (predicted) (Ugt2b10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55926132-S	ILMN_286351	RFC2	NM_053786.1	NM_053786.1		116468	55926132	NM_053786.1	Rfc2	NP_446238.1	ILMN_1358965	0000050576	S	1266	AGCTCTGCCTGCCGAGTACTAGAGTCACAGGTGTGTGTCCTGCTTGCTTT	12	-	23185762-23185811	12q12	Rattus norvegicus replication factor C (activator 1) 2 (Rfc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase [goid 5663] [evidence IEA]; A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase [goid 5663] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex [goid 3689] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC95315	MGC95315
Rattus norvegicus	RefSeq	GI_62658678-S	ILMN_62788	LOC501824	XM_577236.1	XM_577236.1		501824	62658678	XM_577236.1	LOC501824	XP_577236.1	ILMN_1359526	0000460600	S	337	ACGTCAATCCACTGGAAAGGATGGGGGTAGATCCCAGAAAGGAGCCTGAG					PREDICTED: Rattus norvegicus similar to insulin receptor substrate 3 (LOC501824), mRNA.					
Rattus norvegicus	RefSeq	GI_47576038-S	ILMN_273317	OLR1433	NM_001000525.1	NM_001000525.1		363606	47576038	NM_001000525.1	Olr1433	NP_001000525.1	ILMN_1363493	0003360403	S	687	CTCCGCTGCAGGGCGGCAGAAGACTTTCAATACCTGCGGCTCGCATCTCA	10	+	44548168-44548217	10q22	Rattus norvegicus olfactory receptor 1433 (Olr1433), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1433	Olr1433
Rattus norvegicus	RefSeq	GI_62650704-S	ILMN_264118	INSM2_PREDICTED	XM_001079190.1	XM_001079190.1		314131	109479402	XM_001079190.1	Insm2_predicted	XP_001079190.1	ILMN_1363489	0005290528	S	1676	ATATCCGAGAGAAGCACCGGCTATGGCACGCTGTCCGAGAGGAGCTGCTA				6q23	PREDICTED: Rattus norvegicus insulinoma-associated 2 (predicted) (Insm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138634-S	ILMN_266924	ETFDH	NM_198742.2	NM_198742.2		295143	52138634	NM_198742.2	Etfdh	NP_942037.2	ILMN_1348782	0006200215	S	1973	TTAACTGGGTGGTCCCAGAAGGTGGAGGAGGACCTGCTTACAATGGCATG	2	-	171008837-171008886	2q32	Rattus norvegicus electron-transferring-flavoprotein dehydrogenase (Etfdh), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: reduced ETF + ubiquinone = ETF + ubiquinol [goid 4174] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]; Catalysis of the reaction: reduced ETF + ubiquinone = ETF + ubiquinol [goid 4174] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC93785	MGC93785
Rattus norvegicus	RefSeq	GI_62643667-S	ILMN_59004	LOC497758	XM_579454.1	XM_579454.1		497758	62643667	XM_579454.1	LOC497758	XP_579454.1	ILMN_1356263	0001500301	S	4363	GTGGTGACTAGACATGCAGAAACACAAAGCAGTGCTGAGGTGGCCTAAGT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022280 (LOC497758), mRNA.					
Rattus norvegicus	RefSeq	GI_62642376-S	ILMN_61414	SEMA4G_PREDICTED	XM_342055.3	XM_342055.3		361764	109460170	XM_342055.3	Sema4g_predicted	XP_342056.2	ILMN_1353442	0001940019	S	4253	GAGAATGGCTGTACTTCTTCAGGAATGCCCCCCACTCATCACCCAGGTGG	1	+	250068862-250068911	1q54	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (predicted) (Sema4g_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655925-S	ILMN_264774	RGD1311343_PREDICTED	XM_340781.2	XM_340781.2		360506	62655925	XM_340781.2	RGD1311343_predicted	XP_340782.1	ILMN_1351241	0004070086	S	494	GATGAATGTGAACCTTCCTGTCTTCTCTGGTGAGAGTCCACTGAGATCCC	10	-	15930582-15930627:15930628-15930631	10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930524B15 (predicted) (RGD1311343_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662271-S	ILMN_262886	LOC290595	XM_001065661.1	XM_001065661.1		290595	109503855	XM_001065661.1	LOC290595	XP_001065661.1	ILMN_1369565	0004200082	S	492	GGGAGCTACAGATTCAGAGACTTCCAAGCTGACTGGCGAACAGAGTAGCA				16p14	PREDICTED: Rattus norvegicus hypothetical gene supported by AF152002 (LOC290595), mRNA.					
Rattus norvegicus	RefSeq	GI_62654024-S	ILMN_287483	SENP6_PREDICTED	XM_001061212.1	XM_001061212.1		300860	109485025	XM_001061212.1	Senp6_predicted	XP_001061212.1	ILMN_1358834	0000630471	S	4666	GCAGGTGCAGCTCGAGTCTCAGAGCCCAGGATTACCTTTGCAGTTTATCT				8q31	PREDICTED: Rattus norvegicus SUMO/sentrin specific peptidase 6 (predicted) (Senp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652083-S	ILMN_51259	PPFIA2_PREDICTED	XM_343204.3	XM_343204.3		362876	109480546	XM_343204.3	Ppfia2_predicted	XP_343205.3	ILMN_1374449	0005670278	S	4648	GCTGAACACCTGCCTCTGATCATGTGATTTAACCTGGAGCCCAAAATGAC	7	+	45616231-45616280	7q21	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (predicted) (Ppfia2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646448-S	ILMN_282626	RGD1562846_PREDICTED	XM_001053128.1	XM_001053128.1		502694	109471399	XM_001053128.1	RGD1562846_predicted	XP_001053128.1	ILMN_1357042	0002680047	S	701	ACTGGGGTGGAACGAGAACAGAGCGAGAGATTCAATGTGTATTTGATGCC				3q42	PREDICTED: Rattus norvegicus similar to Docking protein 5 (Downstream of tyrosine kinase 5) (Protein dok-5) (predicted), transcript variant 2 (RGD1562846_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56606075-S	ILMN_298386	ISG20	XM_001064354.1	XM_001064354.1		293052	109462179	XM_001064354.1	Isg20	XP_001064354.1	ILMN_1369277	0001500605	S	408	AACAACTGGCGGGGCCACTGCTCTGTAGAAGATGCCAGGGCCACAATGGA				1q31	PREDICTED: Rattus norvegicus interferon stimulated exonuclease 20 (Isg20), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]	The hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides [goid 738] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 6401] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]	Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule [goid 175] [evidence ISS]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a single-stranded DNA molecule [goid 8310] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661575-S	ILMN_50128	SETDB2_PREDICTED	XM_224248.3	XM_224248.3		305931	62661575	XM_224248.3	Setdb2_predicted	XP_224248.3	ILMN_1350429	0001050129	S	1618	CTACCAGTAGAGAAGACACTTCCCCAGCATACGGGTGTAAGCACGCAGCC					PREDICTED: Rattus norvegicus SET domain, bifurcated 2 (predicted) (Setdb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639258-S	ILMN_68869	LOC292687	XM_214869.3	XM_214869.3		292687	62639258	XM_214869.3	LOC292687	XP_214869.2	ILMN_1363914	0005890181	S	1224	TCACTGGCTTCTTCAGTGAGTGCCTCTACAGCTGGGCGAGGAATGAGGCG				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20084 (predicted) (LOC292687), mRNA.					
Rattus norvegicus	RefSeq	GI_62639422-S	ILMN_54337	DPY19L3_PREDICTED	XM_218514.4	XM_218514.4		308519	109458594	XM_218514.4	Dpy19l3_predicted	XP_218514.4	ILMN_1356733	0005700102	S	2204	ACGTCGCCAATGGACATGAGATGGATGGGCCAGGAGAGAGTGACCCTGAC	1	-	88245543-88245576:88247211-88247226	1q21	PREDICTED: Rattus norvegicus dpy-19-like 3 (C. elegans) (predicted) (Dpy19l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27693577-S	ILMN_288632	ADAMTSL4	NM_001034012.1	NM_001034012.1		310670	77404406	NM_001034012.1	Adamtsl4	NP_001029184.1	ILMN_2040184	0005420349	S	3439	CAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGACAGTTCTC	2|NW_047645.1	+	122028-122053:122193-122216		Rattus norvegicus ADAMTS-like 4 (Adamtsl4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC116260; Tsrc1	MGC116260; Tsrc1
Rattus norvegicus	RefSeq	GI_62644634-S	ILMN_288632	ADAMTSL4	NM_001034012.1	NM_001034012.1		310670	77404406	NM_001034012.1	Adamtsl4	NP_001029184.1	ILMN_2038984	0005910682	S	3407	CACCTGCGACCTTCTAGGAAGCGGCCCTGTAACAGCCAACCCTGCAACCA	2|NW_047645.1	+	121996-122045		Rattus norvegicus ADAMTS-like 4 (Adamtsl4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC116260; Tsrc1	MGC116260; Tsrc1
Rattus norvegicus	RefSeq	GI_62653220-S	ILMN_64818	LOC315409	XM_235805.3	XM_235805.3		315409	62653220	XM_235805.3	LOC315409	XP_235805.3	ILMN_1367176	0007050156	S	3153	AATATCACACATACAGGAGGCCCTGGGGAACAGCCGCCGCATGAGCATCG				8q11	PREDICTED: Rattus norvegicus similar to mKIAA1377 protein (LOC315409), mRNA.					
Rattus norvegicus	RefSeq	GI_62664276-S	ILMN_289472	PCDHGC3	NM_053943.1	NM_053943.1		116782	71143095	NM_053943.1	Pcdhgc3	NP_446395.1	ILMN_1363973	0000780066	S	2429	GTTGTGATCCCGTGTTCTATAGACAGGTGTTGGGTGCAGAGAGCGCCCCC	18	+	30716972-30717021	18p11	Rattus norvegicus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928777-S	ILMN_285738	AKT3	NM_031575.1	NM_031575.1		29414	13928777	NM_031575.1	Akt3	NP_113763.1	ILMN_1370315	0002690008	S	1205	AAACGCCTTGGTGGAGGGCCAGATGATCCAAAAGAGATAATGAGGCACAG	13	-	92813876-92813894:92825848-92825878	13q25	Rattus norvegicus v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) (Akt3), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Pkbg	Pkbg
Rattus norvegicus	RefSeq	GI_62655018-S	ILMN_269435	RGD1562143_PREDICTED	XM_001062088.1	XM_001062088.1		299504	109487076	XM_001062088.1	RGD1562143_predicted	XP_001062088.1	ILMN_1362801	0003940463	S	396	TATCAAGCCCGCCTACTTTAACCTCCTCCTGGCTTCTGTGGGGAGGCCCC				9q22	PREDICTED: Rattus norvegicus similar to Ctps protein (predicted) (RGD1562143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660648-S	ILMN_273667	RGD1305605_PREDICTED	XM_001058941.1	XM_001058941.1		289724	109500759	XM_001058941.1	RGD1305605_predicted	XP_001058941.1	ILMN_1372060	0003140017	S	2663	CTGATCTGTGAGAAGAGCAAGCCAGTCCCCCTAAAGCAGTTCACCCCCCG				14q21	PREDICTED: Rattus norvegicus similar to 2610033H07Rik protein (predicted) (RGD1305605_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656617-S	ILMN_59301	RGD1564005_PREDICTED	XM_340854.3	XM_340854.3		360575	109488620	XM_340854.3	RGD1564005_predicted	XP_340855.3	ILMN_1368758	0005550390	S	3082	CTGGCTTCTCTCTGCCAGGGGCTCAAAAGGGGCACAAACGTGGGTCAAGA	10	+	66646528-66646577	10q26	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1564005_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657266-A	ILMN_274423	SLC16A6	NM_198760.1	NM_198760.1		303772	58801513	NM_198760.1	Slc16a6	NP_942055.1	ILMN_1376607	0001940132	S	1484	TGTGCCAGAATCCTCACTCAGGTGAAAACCAGACAGACGGGCATCGCGGG	10	+	98874639-98874688	10q32.1	Rattus norvegicus solute carrier family 16, member 6 (monocarboxylic acid transporter 7) (Slc16a6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Mct7B; MGC94224	Mct7B; MGC94224
Rattus norvegicus	RefSeq	GI_13591964-S	ILMN_294379	GTF2B	NM_031041.1	NM_031041.1		81673	13591964	NM_031041.1	Gtf2b	NP_112303.1	ILMN_1366282	0003190497	S	872	CGACAGTCCTACAGACTGATCTACCCTCGGGCTCCAGATCTCTTCCCTTC	2	+	240895297-240895346	2q44	Rattus norvegicus general transcription factor IIB (Gtf2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078654-S	ILMN_296194	RGD1306568	NM_001013963.1	NM_001013963.1		302890	62078654	NM_001013963.1	RGD1306568	NP_001013985.1	ILMN_1354853	0003190102	S	1779	TGGTGCACAAGTAACCAGGGCCGCCACATCCTGCCAAGGAAGTCTTACAG	10	+	3697982-3698031	10q11	Rattus norvegicus similar to C530044N13Rik protein (RGD1306568), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21914828-S	ILMN_299767	PDCD4	NM_022265.2	NM_022265.2		64031	21914828	NM_022265.2	Pdcd4	NP_071601.2	ILMN_1354540	0001340019	S	945	GGGATCCGGAGGAGGGCAGCAGCCTGTCAATCACCTTGTTAAAGAGATCG	1	+	260197033-260197078:260198844-260198847	1q55	Rattus norvegicus programmed cell death 4 (Pdcd4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of JUN kinase activity [goid 43508] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Dug	Dug
Rattus norvegicus	RefSeq	GI_62654669-S	ILMN_69347	USP49_PREDICTED	XM_236919.4	XM_236919.4		316211	109485752	XM_236919.4	Usp49_predicted	XP_236919.4	ILMN_1357463	0006110341	S	1990	CAGGTGGTCTGGCCGTAACCATCGTGAGAAGATCGGGGTCCATGTCGTCT	9	-	8778331-8778378:8779105-8779106	9q12	PREDICTED: Rattus norvegicus ubiquitin specific peptidase 49 (predicted) (Usp49_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642846-S	ILMN_63991	LY78_PREDICTED	XM_226731.3	XM_226731.3		294706	62642846	XM_226731.3	Ly78_predicted	XP_226731.2	ILMN_1370630	0003130064	S	1822	GCGCAAATCCCCCATTGTTGAGGGGAGTCAAGGTCTCTGACGTCATGCTG				2q12	PREDICTED: Rattus norvegicus lymphocyte antigen 78 (predicted) (Ly78_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664070-S	ILMN_263374	ZFP521_PREDICTED	XM_001073019.1	XM_001073019.1		307579	109506967	XM_001073019.1	Zfp521_predicted	XP_001073019.1	ILMN_1353751	0006400368	S	3808	GCTCGTGCCAGACGCCAACAGCACACAGTTGAAAACGCCCCAAGTGTCAC				18p13	PREDICTED: Rattus norvegicus zinc finger protein 521 (predicted) (Zfp521_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655128-S	ILMN_67509	ALS2CR13_PREDICTED	XM_343576.3	XM_343576.3		363236	109486141	XM_343576.3	Als2cr13_predicted	XP_343577.2	ILMN_1362586	0006620609	S	1681	CCAGTGATGTGAAACAGCAAGGCTCCTGGAAGGACTCGTGGTCCCCTGAG	9	+	58540747-58540796	9q31	PREDICTED: Rattus norvegicus amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (predicted) (Als2cr13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577788-S	ILMN_289406	OLR1237	NM_001000963.1	NM_001000963.1		405315	47577788	NM_001000963.1	Olr1237	NP_001000963.1	ILMN_1366976	0000580494	S	544	CCCTTGCTTCAGCTCTCCTGCACAAGCACTGATGTTAATAAGCTCGTAGC	8	+	40582332-40582381	8q22	Rattus norvegicus olfactory receptor 1237 (Olr1237), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1237	Olr1237
Rattus norvegicus	RefSeq	GI_42794261-S	ILMN_53029	GIMAP5	NM_145680.3	NM_145680.3		246774	77873384	NM_145680.3	Gimap5	NP_663713.1	ILMN_1355145	0004480347	S	1041	GGGCAGCTGGATGGCTAAAATGCTTTGCAGAGTCACGTCCTGCTTGGACT	4	+	76842911-76842960	4q24	Rattus norvegicus GTPase, IMAP family member 5 (Gimap5), transcript variant 2, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Ian4l1; Ian5; IAN4	Ian4l1; Ian5; IAN4
Rattus norvegicus	RefSeq	GI_62650578-S	ILMN_291859	RGD1563296_PREDICTED	XM_001076141.1	XM_001076141.1		314030	109479251	XM_001076141.1	RGD1563296_predicted	XP_001076141.1	ILMN_1372047	0000050026	S	2174	GACCCCTTGGTGAAGGTGGGAAACTGCGACTTGCTGCCGATTTTGCACAG					PREDICTED: Rattus norvegicus similar to component of oligomeric golgi complex 5 isoform 1 (predicted) (RGD1563296_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652719-I	ILMN_270512	RBP1	XM_001076209.1	XM_001076209.1		300067	109482551	XM_001076209.1	Rbp1	XP_001076209.1	ILMN_1375313	0006940022	I	1450	CTGGCCCCCCAGGAGAAGCCCAATAGTCAACAGGTCTCAGAGGAATTGGC				7q34	PREDICTED: Rattus norvegicus reg I binding protein I (Rbp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence IEA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina [goid 16918] [evidence IEA]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656396-S	ILMN_62959	FBXW11_PREDICTED	XM_220281.4	XM_220281.4		303024	109487953	XM_220281.4	Fbxw11_predicted	XP_220281.4	ILMN_1355074	0000380632	S	2219	TGGGTAGTCGTTTGGCACCCAGCACGTCACCAAGAACACAAGGCTGCTTT	10	+	17598205-17598254	10q12	PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 11 (predicted) (Fbxw11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605771-S	ILMN_284879	FRMD8	NM_001008348.1	NM_001008348.1		309172	56605771	NM_001008348.1	Frmd8	NP_001008349.1	ILMN_1357967	0001740672	S	2522	CCTGCCCAGTGAACTCCAGAAGTCTTAGCAGCAGAGAGAAAAGGCTGGCC	1	-	208489644-208489693	1q43	Rattus norvegicus FERM domain containing 8 (Frmd8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94709	MGC94709
Rattus norvegicus	RefSeq	GI_62718073-S	ILMN_268801	LOC316507	XM_001059653.1	XM_001059653.1		316507	109486586	XM_001059653.1	LOC316507	XP_001059653.1	ILMN_1368830	0005360136	S	1236	CTGCACATTGGCTGCTAGGCCAGAGAAGGGACAGGGGGACCCATGACATA					PREDICTED: Rattus norvegicus similar to src homology 2 domain-containing transforming protein D (LOC316507), mRNA.					
Rattus norvegicus	RefSeq	GI_62645263-S	ILMN_50088	HOXD3_MAPPED	XM_213633.4	XM_213633.4		288152	109468289	XM_213633.4	Hoxd3_mapped	XP_213633.2	ILMN_1370469	0000540465	S	2503	TCACAAATGGTCCTTCATGGGTAGAGTCAGGCAGCCCGGTGGCATAGCGC	3	+	57362331-57362380	3q23	PREDICTED: Rattus norvegicus homeo box D3 (mapped) (Hoxd3_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_47087090-S	ILMN_301427	RING1	NM_212549.1	NM_212549.1		309626	47087090	NM_212549.1	Ring1	NP_997714.1	ILMN_1368055	0000630091	S	1461	GACAGCTTCATCTCCCAAAGCCCCCCAGCCAGACAGCAAGAGGACAGACA	20	+	4971914-4971963	20p12	Rattus norvegicus ring finger protein 1 (Ring1), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence ISS]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence ISS]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence ISS]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence IEA]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence IEA]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence IEA]	The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence ISS]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC112563	MGC112563
Rattus norvegicus	RefSeq	GI_62645230-S	ILMN_285522	ITGA6	XM_001059528.1	XM_001059528.1		114517	109470041	XM_001059528.1	Itga6	XP_001059528.1	ILMN_1351793	0005720402	S	3548	TCAAAGCCTGCTCAGCGCCCCGTATATGAGACTGACTACACCCAGGACGG				3q22	PREDICTED: Rattus norvegicus integrin, alpha 6, transcript variant 4 (Itga6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence IEA]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits [goid 33627] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence IEA]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with laminins, glycoproteins that are major constituents of the basement membrane of cells [goid 43236] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_22779854	ILMN_287992	BRS3	NM_152845.1	NM_152845.1		260319	22779854	NM_152845.1	Brs3	NP_690058.1	ILMN_1650219	0003390736	S	1215	CACTGTGATGGGGCGGGTTCCAGCTACTGGGAGTGCACACGTCTCTGAAA	X	+	141692863-141692912	Xq36	Rattus norvegicus bombesin-like receptor 3 (Brs3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with bombesin to initiate a change in cell activity [goid 4946] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21489986-S	ILMN_263991	PCYOX1	NM_145085.1	NM_145085.1		246302	21489986	NM_145085.1	Pcyox1	NP_659553.1	ILMN_1371164	0007100056	S	3519	CCAGTGGGCACCTCGAACTGGGAAGCAGTGAGCCCCACAATGTTCTATTT	4	-	120568079-120568128	4q34	Rattus norvegicus prenylcysteine oxidase 1 (Pcyox1), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue [goid 30328] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue [goid 30328] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: S-prenyl-L-cysteine + O2 + H20 = a prenal + L-cysteine + H202 [goid 1735] [evidence ISS]; Catalysis of the reaction: S-prenyl-L-cysteine + O2 + H20 = a prenal + L-cysteine + H202 [goid 1735] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cl-(out) = ADP + phosphate + Cl-(in) [goid 8555] [evidence IMP]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Clp55	Clp55
Rattus norvegicus	RefSeq	GI_24899634-S	ILMN_301968	SOSTDC1	NM_153737.1	NM_153737.1		266803	24899634	NM_153737.1	Sostdc1	NP_714959.1	ILMN_1352748	0002120609	S	1223	ATCCCCCTCGTGTTGACCTCTCTTGGAGTGGAATGCCAGCAATGCAAGGC	6	+	55070058-55070107	6q16	Rattus norvegicus sclerostin domain containing 1 (Sostdc1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence NAS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Usag1	Usag1
Rattus norvegicus	RefSeq	GI_62644264-S	ILMN_67228	LOC499700	XM_575029.1	XM_575029.1		499700	62644264	XM_575029.1	LOC499700	XP_575029.1	ILMN_1372966	0002510270	S	5	TTAAAAAATAACTTCTCCTTCTGTTCTAGGACGCGTATGCCGCAGCGGCC					PREDICTED: Rattus norvegicus similar to cDNA sequence BC010552 (LOC499700), mRNA.					
Rattus norvegicus	RefSeq	Rn.1569	ILMN_273360	RGD1306327	XM_001060645.1	XM_001060645.1		361018	109502162	XM_001060645.1	RGD1306327	XP_001060645.1	ILMN_1530328	0001580121	S	2155	CCCTCCCAACAGTAAATTATTTTCATTGCTTTTTCATAACTGTATTCTTA				15p14	PREDICTED: Rattus norvegicus similar to downregulated in renal cell carcinoma, transcript variant 2 (RGD1306327), mRNA.					
Rattus norvegicus	RefSeq	GI_62657888	ILMN_269295	LOC288109	XM_001067387.1	XM_001067387.1		288109	109494388	XM_001067387.1	LOC288109	XP_001067387.1	ILMN_1649738	0007100113	S	2319	TCGAAGCTCTGAGAAGGTCCTCCCCCTACCAGTCTTCTGCATCGTGGCCA				11q21	PREDICTED: Rattus norvegicus Msid2 (LOC288109), mRNA.					
Rattus norvegicus	RefSeq	GI_27667775-S	ILMN_269295	LOC288109	XM_001067387.1	XM_001067387.1		288109	109494388	XM_001067387.1	LOC288109	XP_001067387.1	ILMN_2039153	0003190307	S	2377	GTGTGGGCTGCGGCCCTGTACTTTTTCTTCCAGAACCTCAGCAGCTGGGA				11q21	PREDICTED: Rattus norvegicus Msid2 (LOC288109), mRNA.					
Rattus norvegicus	RefSeq	GI_62658966-S	ILMN_58504	LOC498187	XM_579792.1	XM_579792.1		498187	62658966	XM_579792.1	LOC498187	XP_579792.1	ILMN_1368642	0003940465	S	263	CGGGCTCCATCGGGAGACTGTGTCTGTTATTTTATCGTCAGCCCCAACGT					PREDICTED: Rattus norvegicus LOC498187 (LOC498187), mRNA.					
Rattus norvegicus	RefSeq	GI_62648327-S	ILMN_298209	TUBA3B	NM_001024336.1	NM_001024336.1		500363	66730458	NM_001024336.1	Tuba3b	NP_001019507.1	ILMN_1374080	0003190114	S	1416	GGCAGCCATCCATTTCCGCCTTCCCCACCATTGTCACTAAAGGCTATGTT	4	+	183294605-183294654	4q44	Rattus norvegicus tubulin, alpha 3B (Tuba3b), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659340-S	ILMN_274159	PPFIA4	XM_001061955.1	XM_001061955.1		140592	109498649	XM_001061955.1	Ppfia4	XP_001061955.1	ILMN_1369094	0003450072	S	4636	GGGTGGGTGATAGAAGCTGGTAGTGGAAGAGGACAGGGAAGTGCTTGGGC				13q13	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 (Ppfia4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659076-S	ILMN_64833	LOC304572	XM_222254.3	XM_222254.3		304572	62659076	XM_222254.3	LOC304572	XP_222254.3	ILMN_1371228	0003290575	S	5772	GCGCTGCACGCCAACAACCAGCTCCTAGGTATCAGCATCTGTGAAGACAA				12q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410025L10 (LOC304572), mRNA.					
Rattus norvegicus	RefSeq	GI_11120691-S	ILMN_275938	MAPK12	NM_021746.1	NM_021746.1		60352	11120691	NM_021746.1	Mapk12	NP_068514.1	ILMN_1355866	0005910519	S	1444	TCACGAACCCTCCATCTCCAAGCCAGTTCTTCAGATTTTGAGCGCCCGAG	7	-	127431053-127431102	7q34	Rattus norvegicus mitogen-activated protein kinase 12 (Mapk12), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Sapk3	Sapk3
Rattus norvegicus	RefSeq	GI_17105345-S	ILMN_273738	PLSCR1	NM_057194.1	NM_057194.1		117540	17105345	NM_057194.1	Plscr1	NP_476542.1	ILMN_1350138	0000730010	S	1202	GCCGATAGACGCTGAGAGGAGATCAAGGAATCAAAGGAACGCACCATGGC	8	+	97226375-97226424	8q31	Rattus norvegicus phospholipid scramblase 1 (Plscr1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence TAS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	MGC93252	MGC93252
Rattus norvegicus	RefSeq	GI_62662673-S	ILMN_51664	RGD1565715_PREDICTED	XM_341434.3	XM_341434.3		361149	109503390	XM_341434.3	RGD1565715_predicted	XP_341435.1	ILMN_1362392	0005910215	S	684	GTTGATGATGTCTTGTTGGGCAAGAGGAGAGAAGAGGCTTGAAGACGGGC	16	+	49551721-49551724:49552201-49552201:49552202-49552246	16q11	PREDICTED: Rattus norvegicus similar to low density lipoprotein receptor-related protein binding protein (predicted) (RGD1565715_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718091-S	ILMN_65055	LOC501289	XM_576703.1	XM_576703.1		501289	62718091	XM_576703.1	LOC501289	XP_576703.1	ILMN_1370068	0002690725	S	2185	CCTGGTTAAACCCACAGAGGTGTTTACAGGCTGAAGAAACCTCAGTCCTG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501289), mRNA.					
Rattus norvegicus	RefSeq	GI_62652742-I	ILMN_61799	CBX6_PREDICTED	XM_576309.1	XM_576309.1		315136	62652742	XM_576309.1	Cbx6_predicted	XP_576309.1	ILMN_1375506	0004280364	S	309	GCCCGGGCCCAGGCGGAGGCCCTCCGCATCAGTGATGTGCATTTCTCTGT				7q34	PREDICTED: Rattus norvegicus chromobox homolog 6 (predicted) (Cbx6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650251-S	ILMN_50532	SFRS7_PREDICTED	XM_343003.2	XM_343003.2		362687	62650251	XM_343003.2	Sfrs7_predicted	XP_343004.2	ILMN_1366143	0003610670	S	654	GATCAGCTTCACTCAGAAGATCTAGATCCCGCTCAAGGTCGAGATCAAGA				6q11	PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 7 (predicted) (Sfrs7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657705-S	ILMN_63664	LOC501761	XM_577161.1	XM_577161.1		501761	62657705	XM_577161.1	LOC501761	XP_577161.1	ILMN_1358311	0004810280	S	2039	CGGTGTGACTTTAACCAAGCAACTTAAGTCCATGTGGATCAAGGACCTCC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501761), mRNA.					
Rattus norvegicus	RefSeq	GI_62659865-S	ILMN_52557	TMEM63A_PREDICTED	XM_223000.4	XM_223000.4		289318	109498278	XM_223000.4	Tmem63a_predicted	XP_223000.4	ILMN_1352703	0000430735	S	3108	CCACGGGCTTTGTAGCCGCCTCTGCACCTGCTGTGCTTCTGGGTTTTTGT	13	+	96704006-96704055	13q26	PREDICTED: Rattus norvegicus transmembrane protein 63a (predicted) (Tmem63a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647531-S	ILMN_48278	LOC502802	XM_578301.1	XM_578301.1		502802	62647531	XM_578301.1	LOC502802	XP_578301.1	ILMN_1356612	0001580184	S	186	TCTCAGCTCCTGATCTATGATGCAACCAGCTTGGCAGATGGCGTCCCATC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502802), mRNA.					
Rattus norvegicus	RefSeq	GI_62651909-S	ILMN_65692	LOC366784	XM_345767.2	XM_345767.2		366784	62651909	XM_345767.2	LOC366784	XP_345768.2	ILMN_1365373	0005420538	S	56	TGTGTGCTCTAGGTTGGCAGAGCAAGGGAGGATGGGGGTGCCCTACTGCA				7q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC366784), mRNA.					
Rattus norvegicus	RefSeq	GI_57113788-S	ILMN_267622	V1RG9	NM_001008916.1	NM_001008916.1		494266	57113788	NM_001008916.1	V1rg9	NP_001008916.1	ILMN_1367816	0001190040	S	561	CTATGATGGCCTGTGTCTGGGTCTCATGGCCTGCTCAAGTGTCTATATGG	1	-	71866583-71866632	1q21	Rattus norvegicus vomeronasal 1 receptor, G9 (V1rg9), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	V1rg14	V1rg14
Rattus norvegicus	RefSeq	GI_62647333-S	ILMN_62053	LSM5_PREDICTED	XM_224630.3	XM_224630.3		306222	109472075	XM_224630.3	Lsm5_predicted	XP_224630.2	ILMN_1357878	0003130369	S	277	CTGGAGGAGAAGGGCCTGAAGTATGAGTGGATTTCCTTGACTTATGCTGG	4	-	85657037-85657061:85657062-85657086	4q24	PREDICTED: Rattus norvegicus LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663411-S	ILMN_53004	GCM2_PREDICTED	XM_225247.4	XM_225247.4		291047	109504822	XM_225247.4	Gcm2_predicted	XP_225247.4	ILMN_1363796	0001780064	S	1607	CCAGACCTACTCTGGCTTTCCCTCAAGAAACAGATCCCTCCAGGACAGCT	17	+	29610835-29610884	17p12	PREDICTED: Rattus norvegicus glial cells missing homolog 2 (Drosophila) (predicted) (Gcm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655070-S	ILMN_278990	RGD1306941_PREDICTED	XM_001067792.1	XM_001067792.1		316406	109487190	XM_001067792.1	RGD1306941_predicted	XP_001067792.1	ILMN_1349081	0001050632	S	876	CAATGTACTGGCTGGATGGCGGACATTCTGGAGGAAGCAATACGTGGGTC				9q31	PREDICTED: Rattus norvegicus similar to CG31122-PA (predicted) (RGD1306941_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654552-S	ILMN_62873	LOC503233	XM_578763.1	XM_578763.1		503233	62654552	XM_578763.1	LOC503233	XP_578763.1	ILMN_1373629	0004780010	S	178	GCGCCCTGCAAAATGGCGCCCTACACACCTCTGGTTTGGGAAGTTTTTGG					PREDICTED: Rattus norvegicus similar to ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 (LOC503233), mRNA.					
Rattus norvegicus	RefSeq	GI_16758099-S	ILMN_291373	FXC1	NM_053371.1	NM_053371.1		84384	16758099	NM_053371.1	Fxc1	NP_445823.1	ILMN_1354482	0000450601	S	640	AGAGCAGCTTGTGAACTTAATTCCCCAAACCAGGAAGGTGGAGACCCAGG				1q33	Rattus norvegicus fractured callus expressed transcript 1 (Fxc1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IEA]	The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the mitochondria inner membrane. Inner membrane proteins are first imported into the matrix space where the matrix-targeting sequence is removed; how these proteins then are incorporated into the inner membrane is not known [goid 45039] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tim9b	Tim9b
Rattus norvegicus	RefSeq	GI_62653965-S	ILMN_267854	RGD1309791_PREDICTED	XM_236252.3	XM_236252.3		300718	62653965	XM_236252.3	RGD1309791_predicted	XP_236252.3	ILMN_1349026	0005670609	S	1469	GGACCCCGCAGCTTCCAGAGCCAGGGAACACCTATGAGCAAATCCCAGCT	8	+	58090557-58090606	8q24	PREDICTED: Rattus norvegicus similar to SH2 domain protein 2A (T cell-specific adapter protein) (TSAd) (VEGF receptor-associated protein) (SH2 domain containing adapter protein) (predicted) (RGD1309791_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642322-S	ILMN_58652	ENTPD7_PREDICTED	XM_239062.4	XM_239062.4		309390	109460124	XM_239062.4	Entpd7_predicted	XP_239062.3	ILMN_1350870	0004230427	S	2075	CACTGGACCTGCTGTGGATCGAGCAAGTGGTGCCGATGATTGGGGTGCAG	1	-	247098860-247098909	1q54	PREDICTED: Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 7 (predicted) (Entpd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027401-S	ILMN_298704	ARHGEF9	NM_023957.1	NM_023957.1		66013	13027401	NM_023957.1	Arhgef9	NP_076447.1	ILMN_1349180	0002510341	S	3535	GTAGGTTTTGTTCCTGACAGACTCCCGTCCCAGGACAACTGAGGCACGTG				Xq31	Rattus norvegicus Cdc42 guanine nucleotide exchange factor (GEF) 9 (Arhgef9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The maintenance of membrane composition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft) [goid 1941] [evidence IMP]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IPI]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645479-S	ILMN_61066	LOC499846	XM_575186.1	XM_575186.1		499846	62645479	XM_575186.1	LOC499846	XP_575186.1	ILMN_1352865	0005670402	S	1042	ATAAGGCCACTGAAAGCCATCTGAGGGCCCCGCTTACATGCTGCCACCTC				3q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C130096D04 gene (LOC499846), mRNA.					
Rattus norvegicus	RefSeq	GI_62648875-S	ILMN_285378	CD72	NM_001015016.1	NM_001015016.1		313498	62543518	NM_001015016.1	Cd72	NP_001015016.1	ILMN_1349019	0003930382	S	1095	TACAGACCTTTTCCCCTGCATTTGTGAGCTGGAGGCGCTCAGGTTTCCTG	5	-	59918618-59918667	5q22	Rattus norvegicus Cd72 molecule (Cd72), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC108873	MGC108873
Rattus norvegicus	RefSeq	GI_62649087-S	ILMN_56489	LOC502952	XM_578457.1	XM_578457.1		502952	62649087	XM_578457.1	LOC502952	XP_578457.1	ILMN_1374264	0006650059	S	736	AGCATTACCTGCACTTGCAGGTCCCAGTGAGCCCATGCTCCAGTTTCTGA					PREDICTED: Rattus norvegicus similar to alpha-2u globulin PGCL4 (LOC502952), mRNA.					
Rattus norvegicus	RefSeq	GI_62655846-S	ILMN_294424	MAPK8IP3	XM_001057684.1	XM_001057684.1		302983	109490358	XM_001057684.1	Mapk8ip3	XP_001057684.1	ILMN_1359487	0006350463	S	5169	TGGCCTCTACTGCACTCTTCCCACCAGAGAAGCACAGATCCAGGGGCACT				10q12	PREDICTED: Rattus norvegicus mitogen-activated protein kinase 8 interacting protein 3 (Mapk8ip3), mRNA.			Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62650353-S	ILMN_270045	SLC30A6_PREDICTED	XM_001065683.1	XM_001065683.1		298786	109478995	XM_001065683.1	Slc30a6_predicted	XP_001065683.1	ILMN_1366762	0006450711	S	1639	GAAGTCTGAATGCCAGCTGCTTTGTAACCGCCAACGCTGTGACACTCTGG				6q12	PREDICTED: Rattus norvegicus solute carrier family 30 (zinc transporter), member 6 (predicted) (Slc30a6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577632-S	ILMN_269408	OLR544	NM_001001052.1	NM_001001052.1		405940	47577632	NM_001001052.1	Olr544	NP_001001052.1	ILMN_1374165	0003190050	S	97	ATAGTTTACATATTAACTTTGGTGGGAAATATGGGCTTAATAATCCTAGT	3	-	70610309-70610358	3q24	Rattus norvegicus olfactory receptor 544 (Olr544), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr544	Olr544
Rattus norvegicus	RefSeq	GI_11024661-S	ILMN_299571	MCA32	NM_021585.1	NM_021585.1		59105	11024661	NM_021585.1	Mca32	NP_067596.1	ILMN_1355362	0003990364	S	1310	GAAGGATCCATCGCCCTCTTCTGGCACCTGCAGGCACTACACTCATGTGC				10q32.1	Rattus norvegicus mast cell antigen 32 (Mca32), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62653434-S	ILMN_52889	LOC360437	XM_346825.2	XM_346825.2		360437	62653434	XM_346825.2	LOC360437	XP_346826.2	ILMN_1369150	0001660152	S	3026	CCTGATGTACGGAGGCAGGGGGGCCCAGGAAGTTTTTTGTCATCACCTTC					PREDICTED: Rattus norvegicus hypothetical LOC360437 (LOC360437), mRNA.					
Rattus norvegicus	RefSeq	GI_6980971-S	ILMN_273011	GOT2	NM_013177.1	NM_013177.1		25721	6980971	NM_013177.1	Got2	NP_037309.1	ILMN_1356903	0002360717	S	2013	CATGCCATAACCTTCTGTCTCAGCAAAGAGCCGGGGAGAGTGGGACCCTG	19	+	9655028-9655077	19p13	Rattus norvegicus glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (Got2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle [goid 6107] [evidence ISS]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence TAS]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IDA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6531] [evidence IMP]; The chemical reactions and pathways resulting in the formation of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6532] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6533] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence TAS]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including aspartate [goid 19550] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including 2-oxoglutarate [goid 19551] [evidence ISS]; The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-) [goid 43648] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]	Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IDA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence ISS]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IDA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IMP]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IEA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IMP]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]	ASPATA	ASPATA
Rattus norvegicus	RefSeq	GI_62640973-S	ILMN_63440	LOC502351	XM_577821.1	XM_577821.1		502351	62640973	XM_577821.1	LOC502351	XP_577821.1	ILMN_1359556	0001190433	S	598	CTGAGCTGTCACCAAAGGGTGCTGTCACTGGAGATGTGCAAACAGGAGTG					PREDICTED: Rattus norvegicus similar to CG1404-PA, isoform A (LOC502351), mRNA.					
Rattus norvegicus	RefSeq	GI_62647146-S	ILMN_276177	ARHGEF5	XM_001073085.1	XM_001073085.1		140898	109473423	XM_001073085.1	Arhgef5	XP_001073085.1	ILMN_1374938	0003940064	S	5261	CTTCATAGGAAAAGGGACTGTGGGGCCTGAGCCTAGGTGCTGGACTTTGG				4q23	PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 5 (Arhgef5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34870341-S	ILMN_291697	FOXE3	XM_001069443.1	XM_001069443.1		171302	109477032	XM_001069443.1	Foxe3	XP_001069443.1	ILMN_1360783	0004670121	S	577	TTCCGCCTGGACAGCCTGCTGGGCTTGCAAACCGAGCCGCCAGGACCCTT				5q36	PREDICTED: Rattus norvegicus forkhead box E3 (Foxe3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISO]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence IMP]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISO]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence IMP]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence IEA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISO]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence NAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644260-S	ILMN_67050	LOC365924	XM_345284.2	XM_345284.2		365924	62644260	XM_345284.2	LOC365924	XP_345285.2	ILMN_1349355	0004060170	S	428	TTTCCGCCTGCTTGCTGAGCTTTCCAGCCCCTTTGTAAACCAGAGATCCC				2q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930577M16 (LOC365924), mRNA.					
Rattus norvegicus	RefSeq	GI_62642284-S	ILMN_57196	RGD1566018_PREDICTED	XM_577863.2	XM_577863.2		502386	109460031	XM_577863.2	RGD1566018_predicted	XP_577863.2	ILMN_1354282	0000070136	S	1260	GTGGGATCGTCCGTCCTCCCCTCTACTTAGCATGTCTTCAGAAGAAGCAG	1	+	235963862-235963911	1q52	PREDICTED: Rattus norvegicus similar to ovarian fibroin-like substance-1 (predicted) (RGD1566018_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654977-S	ILMN_265861	NCK2_PREDICTED	XM_001059817.1	XM_001059817.1		316369	109487038	XM_001059817.1	Nck2_predicted	XP_001059817.1	ILMN_1359798	0002060093	S	2299	GTACCCCAGGTGTGCCATCCACATAGTGCTTTTGCCCTTTGGCTTGTTTG				9q22	PREDICTED: Rattus norvegicus non-catalytic region of tyrosine kinase adaptor protein 2 (predicted) (Nck2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644929-S	ILMN_56198	RGD1304977_PREDICTED	XM_238325.4	XM_238325.4		296634	109468016	XM_238325.4	RGD1304977_predicted	XP_238325.4	ILMN_1367549	0006220450	S	6156	TTCGGTACCCTCGCCAGTCAGAACGCACCCACTTTCGGATCCTTGTCCCA	3	+	11163802-11163851	3p11	PREDICTED: Rattus norvegicus similar to mKIAA0023 protein (predicted) (RGD1304977_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540688-S	ILMN_281396	MSN	NM_030863.1	NM_030863.1		81521	13540688	NM_030863.1	Msn	NP_110490.1	ILMN_1354418	0000540504	S	2014	GGCCCACCTGTGTAGCCAATGGAACCTCCTCTTCCTTCTTTGTCACACTC	X	+	83784131-83784180	Xq31	Rattus norvegicus moesin (Msn), mRNA.	A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence ISS]; A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere [goid 22614] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IPI]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence TAS]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656643-S	ILMN_61090	SPACA3_PREDICTED	XM_213416.3	XM_213416.3		287557	109488652	XM_213416.3	Spaca3_predicted	XP_213416.1	ILMN_1355397	0004760452	S	486	AGATCAGCAGCCGGAAGTGGTGCAAAAACCTCGCCCCGAACGGCCCCAAT	10	+	69088606-69088655	10q26	PREDICTED: Rattus norvegicus sperm acrosome associated 3 (predicted) (Spaca3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718195-S	ILMN_70199	LOC501319	XM_576731.1	XM_576731.1		501319	62718195	XM_576731.1	LOC501319	XP_576731.1	ILMN_1365025	0001050022	S	939	TACTTTCTTCTTCAGAAAACATCACTTGAGAGACAACTTGGGGGACCGCC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501319), mRNA.					
Rattus norvegicus	RefSeq	GI_62648572-S	ILMN_281677	MRPL15_PREDICTED	XM_001062230.1	XM_001062230.1		297799	109475995	XM_001062230.1	Mrpl15_predicted	XP_001062230.1	ILMN_1363300	0002030110	S	950	CTGCCTTCAGTAAATCAGACATGTGAGCCAGGGGGGCTGAACACGGGCTC				5q12	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L15 (predicted) (Mrpl15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653858	ILMN_283149	RGD1560364_PREDICTED	XR_007475.1	XR_007475.1		363087	109484976	XR_007475.1	RGD1560364_predicted		ILMN_1651096	0003060095	S	11126	AGGATCCCATCACAGCCAAGAGAGCCTTTGAAGCCATCGAGAGCGCGCAG				8q24	PREDICTED: Rattus norvegicus similar to vacuolar protein sorting 13C protein (predicted) (RGD1560364_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644145-S	ILMN_61418	LOC362009	XM_347019.2	XM_347019.2		362009	62644145	XM_347019.2	LOC362009	XP_347020.1	ILMN_1361047	0001660128	S	152	TGTCTCCAGTGAGGATGTCTTGTCAGCATCGTTTCCATAGCGACCAGGAC					PREDICTED: Rattus norvegicus hypothetical LOC362009 (LOC362009), mRNA.					
Rattus norvegicus	RefSeq	GI_62665293-S	ILMN_64668	LOC307855	XM_226477.3	XM_226477.3		307855	62665293	XM_226477.3	LOC307855	XP_226477.3	ILMN_1353545	0004610102	S	5450	AGGAAAAGAAAGCAAGAAAGCATTGGGCTGGGTGGTGGCGGTGGTGCGAC				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5430401O09 gene (predicted) (LOC307855), mRNA.					
Rattus norvegicus	RefSeq	GI_16758883-S	ILMN_267385	CD52	NM_053983.1	NM_053983.1		117054	16758883	NM_053983.1	Cd52	NP_446435.1	ILMN_1361667	0000520019	S	224	AAAACCACCACCGCTGTCAGAAAAACCCCTGGGAAACCCCCCAAGGCTGG	5	-	152843245-152843294	5q36	Rattus norvegicus CD52 antigen (Cd52), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]			B7	B7
Rattus norvegicus	RefSeq	GI_62718111-S	ILMN_66118	LOC367472	XM_576707.1	XM_576707.1		367472	62718111	XM_576707.1	LOC367472	XP_576707.1	ILMN_1373229	0004780170	S	732	CTGTGTTTCAGATACCCAAGGGCCTTTGACAACTCCAGTATCTTTTTCAG					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367472), mRNA.					
Rattus norvegicus	RefSeq	GI_62659152-S	ILMN_49055	FVT1_PREDICTED	XM_341106.3	XM_341106.3		360833	109497753	XM_341106.3	Fvt1_predicted	XP_341107.1	ILMN_1357787	0002350148	S	2389	TGTTCCCAGGTTGCCACAGTTTCTATGTCCTGGCGCGTTTTACCCTGTCC	13	-	12915047-12915096	13p13	PREDICTED: Rattus norvegicus follicular lymphoma variant translocation 1 (predicted) (Fvt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655866-S	ILMN_266544	CACNA1H	NM_153814.1	NM_153814.1		114862	71274193	NM_153814.1	Cacna1h	NP_722521.1	ILMN_1354730	0000460504	S	7405	GGACCAGTAATTCCTCACAGGCAGGAGGGCACCACAGCTCCATCCATGTG	10	-	14621788-14621837	10q12	Rattus norvegicus calcium channel, voltage-dependent, T type, alpha 1H subunit (Cacna1h), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a low voltage-gated channel [goid 8332] [evidence IDA]		
Rattus norvegicus	Unigene	Rn.13478	ILMN_161050	RN.13478	Rn.13478		Rn.13478		3020026	AA893147			ILMN_1530223	0000510494	S	203	AACATCCAAATATCAGTTAATCTCCTGTGTAGAAAACTATGAGTCGAATA					EST196950 Normalized rat kidney, Bento Soares Rattus sp. cDNA clone RKIBC70 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_56606052-S	ILMN_276032	RPL9	NM_001007598.2	NM_001007598.2		29257	56606052	NM_001007598.2	Rpl9	NP_001007599.2	ILMN_1362251	0001190398	S	575	GAGAAGGGAACCGTCCAGCAGCCTGACGAATGAGACCTCAGTTTCCTAGC	14	+	45595639-45595667:45595668-45595675:45595797-45595809	14p11	Rattus norvegicus ribosomal protein L9 (Rpl9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27465612-S	ILMN_281229	TFPI2	NM_173141.1	NM_173141.1		286926	27465612	NM_173141.1	Tfpi2	NP_775164.1	ILMN_1359732	0003390152	S	647	CTGGATGCTTGCAACCGTGCCTGTGTTAAAGCCTTGAAGAAGCCCAAGAG	4	-	28807513-28807532:28807884-28807913	4q13	Rattus norvegicus tissue factor pathway inhibitor 2 (Tfpi2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665197-S	ILMN_297406	LOC246187	XM_001074656.1	XM_001074656.1		246187	109508717	XM_001074656.1	LOC246187	XP_001074656.1	ILMN_1356461	0002350452	S	1293	CTTGTATGCGGGAGTGCCTGCCTCCGGTGAAGCCTGTTCCTTTGATGGAG				19q12	PREDICTED: Rattus norvegicus liver regeneration-related protein (LOC246187), mRNA.					
Rattus norvegicus	RefSeq	GI_62663727-S	ILMN_65274	LOC498777	XM_574063.1	XM_574063.1		498777	62663727	XM_574063.1	LOC498777	XP_574063.1	ILMN_1365420	0005050364	S	284	GGGGACAATTTTCAGTCGTAAAAATGGCCTACCACGTCCCATCCCTCCCC					PREDICTED: Rattus norvegicus similar to CG6715-PA (LOC498777), mRNA.					
Rattus norvegicus	RefSeq	GI_62662607-S	ILMN_64842	GRLF1_PREDICTED	XM_224781.3	XM_224781.3		306400	62662607	XM_224781.3	Grlf1_predicted	XP_224781.3	ILMN_1357979	0000940348	S	1057	AAGTCAGGGGGCTGATGGCTCCTCCAAAGCTTTCCAATTACCGCACCAGC				1q21	PREDICTED: Rattus norvegicus glucocorticoid receptor DNA binding factor 1 (predicted) (Grlf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649676	ILMN_64450	LOC502983	XM_578489.1	XM_578489.1		502983	62649676	XM_578489.1	LOC502983	XP_578489.1	ILMN_1649802	0006110138	S	894	GCCCCTGACACCTTTCATAGTCAGATGGAAGAGGCAATGGCTTCCAGAGG					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC4368 (LOC502983), mRNA.					
Rattus norvegicus	RefSeq	GI_47575896-S	ILMN_284766	OLR588	NM_001000329.1	NM_001000329.1		295822	47575896	NM_001000329.1	Olr588	NP_001000329.1	ILMN_1353418	0002060500	S	750	GGCCATCTATCAGGGCACACTTCTATTCATTTATTCTCGGCCCAGCTCCC	3	+	71563748-71563797	3q24	Rattus norvegicus olfactory receptor 588 (Olr588), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr588; ratchr3-71459371-71460315_ORF	Olr588; ratchr3-71459371-71460315_ORF
Rattus norvegicus	RefSeq	GI_27668728-S	ILMN_272092	B3GNT3_PREDICTED	XM_001069599.1	XM_001069599.1		290638	109503957	XM_001069599.1	B3gnt3_predicted	XP_001069599.1	ILMN_1351009	0006130440	S	746	ACTTCATCCCCACTCTGGTGACAGCTGAGGACAAGTACCCGCCCTACTGC				16p14	PREDICTED: Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 (predicted) (B3gnt3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27718848-S	ILMN_292029	LOC299915	XM_235301.1	XM_235301.1		299915	27718848	XM_235301.1	LOC299915	XP_235301.1	ILMN_1360921	0000580300	S	26	CTGGAGGCCCTCAGAAAGGCAATAAATACACGGCCCGGGAGGGGGTCAAA	7|NW_047791.1	+	94694-94743		PREDICTED: Rattus norvegicus similar to lymphocyte protein tyrosine kinase (LOC299915), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576448-S	ILMN_300836	OLR1592	NM_001000084.1	NM_001000084.1		289254	47576448	NM_001000084.1	Olr1592	NP_001000084.1	ILMN_1370724	0000580131	S	529	GTGCTCAGGTTGGCCTGTACGGATACATCGTTGGTGGTTATTGTGGACGC	13	-	89885913-89885962	13q24	Rattus norvegicus olfactory receptor 1592 (Olr1592), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr13-90075375-90074452_ORF; Olr1592	ratchr13-90075375-90074452_ORF; Olr1592
Rattus norvegicus	RefSeq	GI_62647224-S	ILMN_279915	IGF2BP3	XM_001055450.1	XM_001055450.1		312320	109473466	XM_001055450.1	Igf2bp3	XP_001055450.1	ILMN_1353191	0006110035	S	3952	GACCTGCTCTCCTGCTTGGATCTCAGGGGAGGTATGCTTAAGGCCAGAGC				4q24	PREDICTED: Rattus norvegicus insulin-like growth factor 2, binding protein 3 (Igf2bp3), mRNA.			Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the 5' untranslated region of an mRNA molecule [goid 48027] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662936-S	ILMN_58611	RGD1311283_PREDICTED	XM_225063.4	XM_225063.4		306647	109503567	XM_225063.4	RGD1311283_predicted	XP_225063.3	ILMN_1361715	0000060707	S	2370	CTGTCAGAGCCGGCACAGTGAAGAGGCAAATAAGAAGCTGGTGGAAGCTC	16	-	80571286-80571335	16q12.5	PREDICTED: Rattus norvegicus similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) (predicted) (RGD1311283_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647704-S	ILMN_264887	SPR	XM_001069367.1	XM_001069367.1		29270	109473755	XM_001069367.1	Spr	XP_001069367.1	ILMN_1357712	0002810279	S	1048	CAGGTGAAGAGGGCGGGGTCTGATTCACAGAGAGGACCGAGGGTATTGAA				4q34	PREDICTED: Rattus norvegicus sepiapterin reductase (Spr), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving L-phenylalanine, the levorotatory isomer of 2-amino-3-phenylpropanoic acid [goid 6558] [evidence ISS]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence TAS]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence IEA]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence IMP]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]; The chemical reactions and pathways involving pteridine, pyrazino(2,3-dipyrimidine), the parent structure of pterins and the pteroyl group [goid 19889] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42415] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence ISS]; The chemical reactions and pathways involving tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 46146] [evidence ISS]; The process by which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron [goid 48667] [evidence ISS]; The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system that can be controlled at will [goid 50882] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 7,8-dihydrobiopterin + NADP+ = sepiapterin + NADPH + H+ [goid 4757] [evidence TAS]; Catalysis of the reaction: 7,8-dihydrobiopterin + NADP+ = sepiapterin + NADPH + H+ [goid 4757] [evidence IEA]; Catalysis of the reaction: 7,8-dihydrobiopterin + NADP+ = sepiapterin + NADPH + H+ [goid 4757] [evidence IMP]; Catalysis of the reaction: 7,8-dihydrobiopterin + NADP+ = sepiapterin + NADPH + H+ [goid 4757] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576190-S	ILMN_268791	OLR996	NM_001000700.1	NM_001000700.1		404924	47576190	NM_001000700.1	Olr996	NP_001000700.1	ILMN_1352892	0001240731	S	35	TGGGACTGACGGATGACCCACAACTGAAAACTCTGATCTTCACCTTTCTG	7	+	6358985-6359034	7q11	Rattus norvegicus olfactory receptor 996 (Olr996), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr996	Olr996
Rattus norvegicus	RefSeq	GI_62653955-S	ILMN_55772	LOC367078	XM_345934.2	XM_345934.2		367078	62653955	XM_345934.2	LOC367078	XP_345935.2	ILMN_1362100	0007040292	S	779	CCACCCACATATCATCAGGCTCTACCAGGAGGGCTGTTACCATCAGAGAC					PREDICTED: Rattus norvegicus similar to KIAA0999 protein (LOC367078), mRNA.					
Rattus norvegicus	RefSeq	GI_62639015-S	ILMN_55344	OBOX5_PREDICTED	XM_218256.4	XM_218256.4		308331	109458099	XM_218256.4	Obox5_predicted	XP_218256.4	ILMN_1359010	0000130242	S	310	CCTGTGGCTCCAAGGAAGCCCCGAATGGAAAAACGCACTCAGTACTCCAC	1	-	67197714-67197763	1q12	PREDICTED: Rattus norvegicus oocyte specific homeobox 5 (predicted) (Obox5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641218-S	ILMN_269511	RGD1561491_PREDICTED	XM_001079182.1	XM_001079182.1		365362	109462785	XM_001079182.1	RGD1561491_predicted	XP_001079182.1	ILMN_1374613	0002680091	S	4990	ACCTTTGCCAACCCAGATAACACAGAGAGTGGCTATGAGAAAGCAGTGCC				1q35	PREDICTED: Rattus norvegicus similar to ATP-binding cassette transporter sub-family A member 14 (predicted) (RGD1561491_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664202-S	ILMN_280957	LOC682469	XM_001061636.1	XM_001061636.1		682469	109507126	XM_001061636.1	LOC682469	XP_001061636.1	ILMN_1373837	0002760184	S	264	GCTTGCACTTCTGCTGGAAGGTTCACTTGTTTGGGCTCCCCGGAAGGACC					PREDICTED: Rattus norvegicus similar to jumonji domain containing 1B (LOC682469), mRNA.					
Rattus norvegicus	RefSeq	GI_62642002-S	ILMN_300300	RGD1561135_PREDICTED	XR_009151.1	XR_009151.1		365416	109463650	XR_009151.1	RGD1561135_predicted		ILMN_1371109	0007040717	S	407	CAGCTGAAGCGCCAGCCTACATCACCCAGAGAAGCCTACTTTGTGAGGAC				1q43	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641073-S	ILMN_68354	RGD1563970_PREDICTED	XM_574516.2	XM_574516.2		499223	109459177	XM_574516.2	RGD1563970_predicted	XP_574516.2	ILMN_1363824	0006860086	S	1549	GTATGTGGACCACCCTCTTAAGCTCTCACCTACATCTACGCAGTGCCCCA	1	-	162173282-162173311:162173312-162173331	1q32	PREDICTED: Rattus norvegicus similar to Tripartite motif protein 30-like (predicted) (RGD1563970_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657590-S	ILMN_275909	USP16	XM_001066902.1	XM_001066902.1		288306	109493856	XM_001066902.1	Usp16	XP_001066902.1	ILMN_1373990	0005420440	S	3003	GTCTAGAGTCACACTGACACCAGGACTTCACATCGCTTCCAGCACTACAG				11q11	PREDICTED: Rattus norvegicus ubiquitin specific peptidase 16 (Usp16), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657589-S	ILMN_275909	USP16	XM_001066902.1	XM_001066902.1		288306	109493856	XM_001066902.1	Usp16	XP_001066902.1	ILMN_1360673	0006420440	S	2516	AACCAAAGGGCAGTGGTTTCACATCAGCGACACACACGTGCAAGCGGTGC				11q11	PREDICTED: Rattus norvegicus ubiquitin specific peptidase 16 (Usp16), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639472	ILMN_262774	RGD1563363_PREDICTED	XM_001077206.1	XM_001077206.1		292820	109461767	XM_001077206.1	RGD1563363_predicted	XP_001077206.1	ILMN_1650768	0004210132	S	4036	ATCCAGGGACTGGTCTCACCTTTAGCCCAAGCAGCCGAGGAACAGTGGCA				1q21-q22	PREDICTED: Rattus norvegicus similar to Zfp536 protein (predicted) (RGD1563363_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641470-S	ILMN_64788	DMBT1	XM_577842.1	XM_577842.1		170568	62641470	XM_577842.1	Dmbt1	XP_577842.1	ILMN_1359015	0005220008	S	7476	GAGGATGCTGGAGTCATCTGTTCAGATATGTGGCCTACTACCACCCCAGA				1q37	PREDICTED: Rattus norvegicus deleted in malignant brain tumors 1 (Dmbt1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding a phagocytic vesicle [goid 30670] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The proliferation of cells in the inner cell mass [goid 1833] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation [goid 30858] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13162348-S	ILMN_275688	ACCN2	NM_024154.1	NM_024154.1		79123	13162348	NM_024154.1	Accn2	NP_077068.1	ILMN_1354195	0005340609	S	3196	CCTCAAAGGGAGACAGAATGACTCTGTGCCTTCACTGATGGAAGTCTGGG				7q36	Rattus norvegicus amiloride-sensitive cation channel 2, neuronal (Accn2), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence NAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA];  [goid 15280] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Asic1	Asic1
Rattus norvegicus	RefSeq	GI_62661151-S	ILMN_63849	KCTD6_PREDICTED	XM_223921.4	XM_223921.4		305792	109501394	XM_223921.4	Kctd6_predicted	XP_223921.3	ILMN_1370334	0004150047	S	1063	AAAGAGGGTGTTGCTCTGACTAGTTTCCAGACCAGTAGGCCGTATTGCAG	15	-	18681254-18681303	15p14	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 6 (predicted) (Kctd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663029-S	ILMN_275109	LOC679595	XM_001053629.1	XM_001053629.1		679595	109503625	XM_001053629.1	LOC679595	XP_001053629.1	ILMN_1355839	0000610403	S	186	CCTTGAGCCTGATACGAGTATTTCTACCAATGCCGCTGACTGTCAGGCTG	16|NW_047479.1	-	92234-92283		PREDICTED: Rattus norvegicus hypothetical protein LOC679595 (LOC679595), mRNA.					
Rattus norvegicus	RefSeq	GI_56676357-S	ILMN_301171	IPPK	NM_001008556.1	NM_001008556.1		306808	56676357	NM_001008556.1	Ippk	NP_001008556.1	ILMN_1351826	0000870450	S	1160	CAAAGGTGCAGCAGTACCGAGTAGCCATGACCGCCAAGGACTGTTCCATC	17	-	21150478-21150523:21159092-21159095	17p14	Rattus norvegicus inositol 1,3,4,5,6-pentakisphosphate 2-kinase (Ippk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group into inositol or an inositol derivative. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms [goid 46853] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate = ADP + 1D-myo-inositol hexakisphosphate [goid 35299] [evidence ISS]	rIpk1; C9orf12; RGD1311271	rIpk1; C9orf12; RGD1311271
Rattus norvegicus	RefSeq	GI_62717801-S	ILMN_48785	LOC501226	XM_576649.2	XM_576649.2		501226	109512865	XM_576649.2	LOC501226	XP_576649.2	ILMN_1359466	0006940390	S	713	TCCAGGACAAGATCTCCCTTGGAGAGAAGTGCTACAGGAGGAGTACTACG	Un|NW_047836.1	-	356198-356247		PREDICTED: Rattus norvegicus hypothetical LOC501226 (LOC501226), mRNA.					
Rattus norvegicus	RefSeq	GI_62656792-S	ILMN_275183	EPN3	NM_001024791.1	NM_001024791.1		360605	67078443	NM_001024791.1	Epn3	NP_001019962.1	ILMN_1365679	0001660324	S	2081	CAAGCTAGGGACTGACTGCATCTTGGGATCGAGGACTACGCCCGCCTAAT	10	-	83130387-83130436	10q31	Rattus norvegicus epsin 3 (Epn3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]		Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656249-S	ILMN_300385	RGD1565284_PREDICTED	XM_001078765.1	XM_001078765.1		497929	109491018	XM_001078765.1	RGD1565284_predicted	XP_001078765.1	ILMN_1374061	0001690672	S	658	GTACCACAAAGCTGATCCAGGCAAACCCTCTTCTTGGCCCTGTGGGCAGG				10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A530088H08 gene (predicted) (RGD1565284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644626-S	ILMN_63282	LOC365977	XM_345312.2	XM_345312.2		365977	62644626	XM_345312.2	LOC365977	XP_345313.2	ILMN_2038988	0004480372	S	635	CATCCGAAAGTTCATTTTTCAGGTTTGCGGGACAGGCATATAGCTTTGGG					PREDICTED: Rattus norvegicus similar to Dual specificity phosphatase 14 (LOC365977), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40786476-S	ILMN_291890	RGD735194	NM_199389.1	NM_199389.1		303183	40786476	NM_199389.1	RGD735194	NP_955421.1	ILMN_1358341	0000730035	S	1504	CCCTACCTGGGAACTACATCTTCCTTGGATGGGCCGGGAGAAGCCACAAC	10	-	45713139-45713188	10q22	Rattus norvegicus similar to RIKEN cDNA 1110031B06 (RGD735194), mRNA.				MGC72593	MGC72593
Rattus norvegicus	RefSeq	GI_62641093-S	ILMN_69233	PPFIBP2	XM_219201.4	XM_219201.4		308918	109459203	XM_219201.4	Ppfibp2	XP_219201.4	ILMN_1354441	0003360601	S	2596	GCCACAAAGGGGACAGACTTTGGGGACTCTAGCCAAATGTGGACTCAGGG	1	+	165124741-165124790	1q33	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor-type, F interacting protein, binding protein 2 (Ppfibp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome [goid 15074] [evidence IEA]; The process by which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome [goid 15074] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the integration of lambdoid phage DNA during establishment, probably by forming a transient DNA-protein link [goid 8907] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the integration of lambdoid phage DNA during establishment, probably by forming a transient DNA-protein link [goid 8907] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651210-S	ILMN_52461	AK7_PREDICTED	XM_234507.3	XM_234507.3		314416	62651210	XM_234507.3	Ak7_predicted	XP_234507.3	ILMN_1362415	0004780500	S	2418	CTCGGAGCCTCTCGTACCAATCCCACGCACTACCACGAACGCATGAGATC				6q32	PREDICTED: Rattus norvegicus adenylate kinase 7 (predicted) (Ak7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638452-S	ILMN_50163	LOC363391	XM_347132.2	XM_347132.2		363391	62638452	XM_347132.2	LOC363391	XP_347133.2	ILMN_1363790	0000770181	S	287	GCTAACCATCCAGCCGCCAGGGACCAAGAGTCCAGAGATTAGAAATACAC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC363391), mRNA.					
Rattus norvegicus	RefSeq	GI_62656592	ILMN_287265	SLC46A1	NM_001013969.1	NM_001013969.1		303333	62078666	NM_001013969.1	Slc46a1	NP_001013991.1	ILMN_1650282	0005670577	S	1243	CCATGTTGATGGCCTCCGGCATCTTCAACTCACTCTACCCGGCCACTCTG	10	+	64581360-64581409	10q25	Rattus norvegicus solute carrier family 46, member 1 (Slc46a1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 15884] [evidence ISS]; The directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 15884] [evidence ISS]; The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of, within or between cells [goid 15886] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Enables the directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 8517] [evidence ISS]; Enables the directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 8517] [evidence ISS]; Enables the directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of, within or between cells [goid 15232] [evidence ISS]	MGC108986	MGC108986
Rattus norvegicus	RefSeq	GI_62651229-S	ILMN_302049	EML1	XM_001069752.1	XM_001069752.1		362783	109478627	XM_001069752.1	Eml1	XP_001069752.1	ILMN_1366113	0003390162	S	642	ACACTCGGTGGCACGCTTGGTGCTCAATAAATGGTCATCTGTGCCGGGGG	6	+	132868534-132868563:132868564-132868583	6q32	PREDICTED: Rattus norvegicus echinoderm microtubule associated protein like 1 (Eml1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62659925-S	ILMN_262557	KCTD3	XM_001066967.1	XM_001066967.1		305055	109499257	XM_001066967.1	Kctd3	XP_001066967.1	ILMN_1361373	0004480204	S	2646	GACAGAGGGAAGATGTGTGAGGGAGCCCGATGTGGGCTTAGACGTGCACA				13q26	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 3 (Kctd3), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50811824-S	ILMN_56359	PRM3	NM_001002855.2	NM_001002855.2		442921	71896559	NM_001002855.2	Prm3	NP_001002855.1	ILMN_1365978	0006840408	S	353	TGCTGCTGGAGCCCGAAAAGCAAGATGGTGCTGAGGATGCTGTGGCCCAG	10	+	4815119-4815168	10q11	Rattus norvegicus protamine 3 (Prm3), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660864-S	ILMN_59310	LOC498424	XM_573673.1	XM_573673.1		498424	62660864	XM_573673.1	LOC498424	XP_573673.1	ILMN_1363212	0007000020	S	2339	TGCAGAGTGTGAGGACTCAGACACGGGAACAAGCAGCAGCGAGACGTCAG				Xq31	PREDICTED: Rattus norvegicus similar to 5330440M15Rik protein (LOC498424), mRNA.					
Rattus norvegicus	RefSeq	GI_62660171-S	ILMN_281991	PAQR3	NM_001012033.1	NM_001012033.1		305203	58865641	NM_001012033.1	Paqr3	NP_001012033.1	ILMN_2040870	0003190646	A	1059	CAGGGTCCCACTCTGTAGCCCTGGAACGTGCTAATAAAGACCAGGCTGGC	14	+	13932009-13932058	14p22	Rattus norvegicus progestin and adipoQ receptor family member III (Paqr3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651937-S	ILMN_67157	OLR1088_PREDICTED	XM_234873.4	XM_234873.4		299582	109480294	XM_234873.4	Olr1088_predicted	XP_234873.4	ILMN_1363522	0001770288	S	836	TCGTGCATTTTGGCTGTGTCTCCATCATCTACCTGCGGCCAGACTCCGGG	7	-	12666818-12666867	7q11	PREDICTED: Rattus norvegicus olfactory receptor 1088 (predicted) (Olr1088_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649652-S	ILMN_63294	LOC298536	XM_216537.3	XM_216537.3		298536	62649652	XM_216537.3	LOC298536	XP_216537.3	ILMN_1352563	0006510484	S	3392	CCGGGAGAAGGGCAAACTCCTGCACGGTCAGAATGGATCTGTGCCAAACG					PREDICTED: Rattus norvegicus similar to expressed sequence AU040320 (predicted) (LOC298536), mRNA.					
Rattus norvegicus	RefSeq	GI_19424161-S	ILMN_301996	RPH3A	NM_133518.1	NM_133518.1		171039	19424161	NM_133518.1	Rph3a	NP_598202.1	ILMN_1366341	0006450731	S	2472	AGATGAGAGCCCTTTCTGGTCCTCAGAGATTGGGTGGTGGGTGTTGGGAG	12	+	36753131-36753180	12q16	Rattus norvegicus rabphilin 3A (Rph3a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence TAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643693-S	ILMN_60236	LOC499646	XM_579995.1	XM_579995.1		499646	62643693	XM_579995.1	LOC499646	XP_579995.1	ILMN_1364963	0006220156	S	394	CTCAGCGCCCTCTGTGGAGACTGTCCAAGTCGTGACAGGTGGGAAAGCTT					PREDICTED: Rattus norvegicus LOC499646 (LOC499646), mRNA.					
Rattus norvegicus	RefSeq	GI_27708753-S	ILMN_279533	RGD1564836_PREDICTED	XM_001071767.1	XM_001071767.1		302676	109511746	XM_001071767.1	RGD1564836_predicted	XP_001071767.1	ILMN_1361766	0002680609	S	114	TCCGAAGAGACCTCGGGACCGACTAAAGGGAAGCAAGAATAAGGGGGCAG				Xq21	PREDICTED: Rattus norvegicus similar to HMGA1b (predicted) (RGD1564836_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527343-A	ILMN_286957	OASL	NM_001009681.1	NM_001009681.1		304545	57527343	NM_001009681.1	Oasl	NP_001009681.1	ILMN_1376666	0000510605	S	1698	TCACACCAGGACCTCTACGCTCTCAAGACTGGGTCAGTGAATGGCCGTCC	12	-	42956698-42956747	12q16	Rattus norvegicus 2'-5'-oligoadenylate synthetase-like (Oasl), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560110-S	ILMN_295895	ELTD1	NM_022294.1	NM_022294.1		64124	11560110	NM_022294.1	Eltd1	NP_071630.1	ILMN_1369759	0003130022	S	4011	TCCTCTTCACAAGCTGTGGCCGTGGTGGATAGTGAGGAGCAGGAGGTCCT	2	+	249866623-249866672	2q45	Rattus norvegicus EGF, latrophilin and seven transmembrane domain containing 1 (Eltd1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Etl	Etl
Rattus norvegicus	RefSeq	GI_62663628-S	ILMN_286095	LOC498759	XR_009616.1	XR_009616.1		498759	109505926	XR_009616.1	LOC498759		ILMN_1365937	0006660600	S	585	ATGGTTCCATTGCCTGCTGGTTTTTCCAGAGATCCTGAACTGTCCTGGAA				17q11	PREDICTED: Rattus norvegicus LRRGT00094 (LOC498759), misc RNA.			Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651113-S	ILMN_47829	LOC500699	XM_576081.1	XM_576081.1		500699	62651113	XM_576081.1	LOC500699	XP_576081.1	ILMN_1354865	0001090008	S	2021	GACCAGGACGTGAAGGAATGAACGCTGCCAACCCGTTTCCTATGAAACCA				6q31	PREDICTED: Rattus norvegicus similar to WW domain binding protein 11 (predicted) (LOC500699), mRNA.					
Rattus norvegicus	RefSeq	GI_62645187-S	ILMN_68705	LOC311115	XM_230007.3	XM_230007.3		311115	62645187	XM_230007.3	LOC311115	XP_230007.3	ILMN_1367782	0003060601	S	6432	GAGAAGGACACACACAGATGTCTTCAGAATGTCAGAAGACTGCCTGAGGC				3q21	PREDICTED: Rattus norvegicus similar to zinc finger protein 650 (LOC311115), mRNA.					
Rattus norvegicus	RefSeq	GI_56090266-A	ILMN_271346	S100A1	NM_001007636.1	NM_001007636.1		295214	56090266	NM_001007636.1	S100a1	NP_001007637.1	ILMN_1376604	0003120717	S	281	GGACTTCCAGGAGTTTGTTGTGCTGGTGGCTGCTCTCACAGTGGCTTGTA	2	-	182784843-182784892	2q34	Rattus norvegicus S100 calcium binding protein A1 (S100a1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence NAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence ISS]; Interacting selectively with S100 alpha protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48155] [evidence ISS]; Interacting selectively with an ATPase, any enzyme that catalyzes the hydrolysis of ATP [goid 51117] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51036678-S	ILMN_298425	MNAT1	NM_153472.2	NM_153472.2		266713	51036678	NM_153472.2	Mnat1	NP_703202.1	ILMN_1369015	0004210010	S	1084	ACACCACCGCTGGCTGCTGTGTTCAGGTGTTTATGGCAGTCTGGACCAAG	6	+	95698355-95698404	6q24	Rattus norvegicus menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) (Mnat1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus [goid 21591] [evidence ISS]; The chemical reactions and pathways in multicellular organisms that occur at the tissue, organ, or organismal level. These processes, unlike cellular metabolism, can include transport of substances between cells when that transport is required [goid 44236] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the activity of an enzyme [goid 50790] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645422-S	ILMN_58109	LOC499838	XM_580024.1	XM_580024.1		499838	62645422	XM_580024.1	LOC499838	XP_580024.1	ILMN_1369057	0003120463	S	2008	CTGCTCCAGGTTCCGGCCCAGTTGGAGTTCCTGTTCTGACTTCCTTCAGG					PREDICTED: Rattus norvegicus LOC499838 (LOC499838), mRNA.					
Rattus norvegicus	RefSeq	GI_62650608-A	ILMN_287555	SSTR1	NM_012719.1	NM_012719.1		25033	6981583	NM_012719.1	Sstr1	NP_036851.1	ILMN_1376326	0003610358	S	3215	GGGTCCACAGTGACCTGACATCTAACCTGCAATGGTCGAATGCACTGTTG	6	+	78806607-78806656	6q23	Rattus norvegicus somatostatin receptor 1 (Sstr1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor [goid 7215] [evidence IEA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor [goid 7215] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IMP]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IEA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence ISS]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence ISS]	Gpcrrna	Gpcrrna
Rattus norvegicus	RefSeq	GI_62662759-S	ILMN_273207	DCTN6_PREDICTED	XM_001059405.1	XM_001059405.1		290798	109504257	XM_001059405.1	Dctn6_predicted	XP_001059405.1	ILMN_1358192	0006290110	S	658	GCATCACGCTGACTTTACACTGGAGACTTGAGTTGGAGGGAGGAGGGTCC				16q12.3	PREDICTED: Rattus norvegicus dynactin 6 (predicted) (Dctn6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645803-S	ILMN_273435	ATP8B4	XM_001055184.1	XM_001055184.1		311396	109468764	XM_001055184.1	Atp8b4	XP_001055184.1	ILMN_1361022	0004560097	S	3706	CCGTGGCCTCCAGCTGCCAACGCCTGTCAGATAGTGATGTTTTCTGCAGG	3	-	113781189-113781238	3q36	PREDICTED: Rattus norvegicus ATPase, class I, type 8B, member 4 (Atp8b4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the movement of phospholipids from one membrane face to the other ('flippase' activity), driven by the hydrolysis of ATP [goid 4012] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662760-S	ILMN_277895	RGD1565555_PREDICTED	XM_001067825.1	XM_001067825.1		290799	109504310	XM_001067825.1	RGD1565555_predicted	XP_001067825.1	ILMN_1354184	0003390184	S	3	GCCCCATCAGTGTTACCACGGCAAAGCTAGAAGAGACTACAATGTTACTC				16q12.3	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1565555_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645824-S	ILMN_54433	RGD1304904_PREDICTED	XM_238283.4	XM_238283.4		296130	109468777	XM_238283.4	RGD1304904_predicted	XP_238283.4	ILMN_1354191	0005550632	S	2386	CAGCAGATACCCAGCCCTACAGGACCCCAGCTCCACCTGTCACCTACATT	3	+	114938975-114939024	3q36	PREDICTED: Rattus norvegicus similar to mitochondrial glycerol 3-phosphate acyltransferase (predicted) (RGD1304904_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648433-S	ILMN_68290	LOC502913	XM_578415.1	XM_578415.1		502913	62648433	XM_578415.1	LOC502913	XP_578415.1	ILMN_1371309	0002570500	S	60	CCAAGCCTGAAAAGAAGCCCGGAAAAGAGAGTTGAAAAAGGTCCGCTCCC				4q43	PREDICTED: Rattus norvegicus similar to germinal histone H4 gene (LOC502913), mRNA.					
Rattus norvegicus	RefSeq	GI_13928719-S	ILMN_278680	WT1	NM_031534.1	NM_031534.1		24883	13928719	NM_031534.1	Wt1	NP_113722.1	ILMN_1360850	0005270551	S	1248	GCCCTTCAGCTGTCGGTGGCACAGTTGTCAGAAAAAGTTTGCGCGGTCAG	3	+	90575897-90575946	3q32	Rattus norvegicus Wilms tumor 1 (Wt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IEA]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo [goid 1823] [evidence IEA]; The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo [goid 1823] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; Any process that establishes and transmits the specification of sexual status of an individual organism [goid 7530] [evidence IEA]; Any process that establishes and transmits the specification of sexual status of an individual organism [goid 7530] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence IEA]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IEA]; The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo [goid 1823] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; Any process that establishes and transmits the specification of sexual status of an individual organism [goid 7530] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_28461146-S	ILMN_298249	FCGR2B	NM_175756.1	NM_175756.1		289211	28461146	NM_175756.1	Fcgr2b	NP_786932.1	ILMN_1353489	0002370484	S	952	CTCTTGAGATTGGGAAAAGCAAACCAGTAAGGCCAGGACCTAGCGTCTCC	13	-	86809403-86809452	13q24	Rattus norvegicus Fc fragment of IgG, low affinity IIb, receptor (CD32) (Fcgr2b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents, or reduces the rate of type I hypersensitivity, a type of inflammatory response [goid 1811] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2862] [evidence ISS]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence ISS]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence ISS]; The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50777] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an immunoglobulin of an IgG isotype [goid 19864] [evidence ISS]; Interacting selectively with an immunoglobulin of an IgG isotype [goid 19864] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Fcgr2; FCRII	Fcgr2; FCRII
Rattus norvegicus	RefSeq	GI_62654328-S	ILMN_51645	NCKIPSD_PREDICTED	XM_238555.4	XM_238555.4		301009	109483964	XM_238555.4	Nckipsd_predicted	XP_238555.3	ILMN_1360584	0006620324	S	2692	GCGCCTTCTGTCAGCTCTGTGCTTTGCCTTAGCTTTGCAGTGAGTGCTGC	8	+	113873646-113873695	8q32	PREDICTED: Rattus norvegicus NCK interacting protein with SH3 domain (predicted) (Nckipsd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_60678265-S	ILMN_273031	ENPP5	NM_001012744.1	NM_001012744.1		316249	60678265	NM_001012744.1	Enpp5	NP_001012762.1	ILMN_1358663	0005900152	S	1739	CCCCTCCGTGGCTTTCTTTGGCTCAGTAGGTAGATGGTGCTCTACTTGGG	9	-	12574546-12574595	9q12	Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 5 (Enpp5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Npp5; MGC105517	Npp5; MGC105517
Rattus norvegicus	RefSeq	GI_40538877-I	ILMN_286146	NEXN	NM_139230.1	NM_139230.1		246172	40538877	NM_139230.1	Nexn	NP_631976.1	ILMN_1376073	0004590520	I	77	TCGGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGG	2	-	250782335-250782384	2q45	Rattus norvegicus nexilin (F actin binding protein) (Nexn), transcript variant s, mRNA.	An adherens junction which connects a cell to the extracellular matrix [goid 5924] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; An adherens junction which connects a cell to the extracellular matrix [goid 5924] [pmid 9832551] [evidence IPI]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51493] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51493] [evidence ISS]	Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664601-S	ILMN_67444	RGD1562758_PREDICTED	XM_574168.2	XM_574168.2		498881	109506743	XM_574168.2	RGD1562758_predicted	XP_574168.1	ILMN_1374906	0004230592	S	1147	GTTGTTGAGGAGTCCCCATCCCAACTCAGCCCCCAACACTGAACATCTCC	18	+	64976080-64976129	18q12.1	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1562758_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656151-S	ILMN_51085	JMJD4_PREDICTED	XM_220561.3	XM_220561.3		287359	109488206	XM_220561.3	Jmjd4_predicted	XP_220561.3	ILMN_1372812	0001570368	S	1393	GAGAGTGGACACCAGCGTGTTCTCACCACAGCCAGAGGAGTTGCTTCAGC	10	+	45759829-45759878	10q22	PREDICTED: Rattus norvegicus jumonji domain containing 4 (predicted) (Jmjd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640702-S	ILMN_50253	ARRDC4	XM_218783.4	XM_218783.4		293019	109458901	XM_218783.4	Arrdc4	XP_218783.3	ILMN_1350700	0000450242	S	1258	TTGGCACTGGCCCTGCCGGAGCAGCCTGAAGCACCACCAAATTATGCAGA	1	-	123524578-123524597:123525498-123525527	1q22	PREDICTED: Rattus norvegicus arrestin domain containing 4 (Arrdc4), mRNA.					
Rattus norvegicus	RefSeq	GI_62718858-S	ILMN_285159	LOC680012	XM_001055313.1	XM_001055313.1		680012	109514039	XM_001055313.1	LOC680012	XP_001055313.1	ILMN_1351665	0005700072	S	325	CTCAGCCCCGTAACTGATGTGGCTTGTGACTGGGTTGTGACTGTGTCGTG	Un|NW_048029.1	-	11059-11108		PREDICTED: Rattus norvegicus similar to tolloid-like 2 (LOC680012), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652129-S	ILMN_53482	YEATS4_PREDICTED	XM_216890.3	XM_216890.3		299810	109480541	XM_216890.3	Yeats4_predicted	XP_216890.2	ILMN_1374047	0003170093	S	1170	GTGATTAGTATGGTGTGTTAGTTCTTCAGGCTCACGTCTGCCCCGGCTAC	7	-	56559432-56559481	7q22	PREDICTED: Rattus norvegicus YEATS domain containing 4 (predicted) (Yeats4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882873-S	ILMN_282887	LOC367592	XM_346222.1	XM_346222.1		367592	34882873	XM_346222.1	LOC367592	XP_346223.1	ILMN_1360578	0002970577	S	842	ACGCCACAGTCATGGATGACAGTAATGTGCCCAATCTGATCGCCGCACCT	Un|NW_047925.1	+	24708-24757		PREDICTED: Rattus norvegicus hypothetical LOC367592 (LOC367592), mRNA.					
Rattus norvegicus	RefSeq	GI_47087088-S	ILMN_285164	PRR3	NM_212544.1	NM_212544.1		361788	47087088	NM_212544.1	Prr3	NP_997709.1	ILMN_1361060	0003170670	S	1991	GGCCCTAAGGAAGTGGGTCAGGAGGTATGTGTGCAAGAGGAGAGAGAGCG	20	+	2946167-2946216	20p12	Rattus norvegicus proline-rich polypeptide 3 (Prr3), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cat56	Cat56
Rattus norvegicus	RefSeq	GI_62642276-S	ILMN_56740	LOC365462	XM_345033.2	XM_345033.2		365462	62642276	XM_345033.2	LOC365462	XP_345034.2	ILMN_1362168	0005860577	S	7393	CTTCCCAGGGCAAACGGAGGCGGTTAGAAGCCAAGTGAAACCTGGATAGC				1q54	PREDICTED: Rattus norvegicus similar to DKFZP564P1916 protein (predicted) (LOC365462), mRNA.					
Rattus norvegicus	RefSeq	GI_6980991-S	ILMN_282738	GSTT2	NM_012796.1	NM_012796.1		29487	6980991	NM_012796.1	Gstt2	NP_036928.1	ILMN_1371280	0002100403	S	987	TCTGGCTCTGGGAGGAGCTTTGCTCAAAAGGGACACCACCTATCCTTAGC	20	+	13225078-13225127	20p12	Rattus norvegicus glutathione S-transferase, theta 2 (Gstt2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718447-S	ILMN_60610	LOC301193	XM_236873.3	XM_236873.3		301193	62718447	XM_236873.3	LOC301193	XP_236873.3	ILMN_1352411	0005360044	S	670	GGAGAAATGATGAAATTCAGACGGGTCTGTTAGTGGACAATCAGAAAGGC				14p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC301193), mRNA.					
Rattus norvegicus	RefSeq	GI_62653579-S	ILMN_292348	RGD1566119_PREDICTED	XM_001066891.1	XM_001066891.1		500987	109484599	XM_001066891.1	RGD1566119_predicted	XP_001066891.1	ILMN_1349617	0007000193	S	1189	ACACCCAGATACCAGCACAAGTCGGTGAATCCCTGTCTGGACTGAGCCTC				8q22	PREDICTED: Rattus norvegicus similar to Histone H2A.x (H2a/x) (predicted) (RGD1566119_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644868-S	ILMN_52867	PPP2R4_PREDICTED	XM_342405.3	XM_342405.3		362102	109467990	XM_342405.3	Ppp2r4_predicted	XP_342406.3	ILMN_1373881	0006100711	S	1330	GATGGGTGCTAAGCAGGGTCTGAGTTGGGGGAATTAACCAGAGTATGGCC	3	+	9490981-9491030	3p12	PREDICTED: Rattus norvegicus protein phosphatase 2A, regulatory subunit B (PR 53) (predicted) (Ppp2r4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718592-S	ILMN_47735	LOC501433	XM_576843.1	XM_576843.1		501433	62718592	XM_576843.1	LOC501433	XP_576843.1	ILMN_1362233	0004070026	S	376	ACATGTTGTCTCTGCACATAGCTCCACATGTACTGTGGGGTCAGACTTCG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501433), mRNA.					
Rattus norvegicus	RefSeq	GI_62649631-S	ILMN_280373	OSCP1	NM_001029923.1	NM_001029923.1		362595	71361634	NM_001029923.1	Oscp1	NP_001025094.1	ILMN_1349245	0005050110	S	1049	GTCATCAGCATACAGGCCACACAGGACCAGCAACGGAGTGAGGAGTTGGC	5	+	145440499-145440522:145441130-145441155	5q36	Rattus norvegicus organic solute carrier protein 1 (Oscp1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]		MGC116206	MGC116206
Rattus norvegicus	RefSeq	GI_62662006-S	ILMN_50469	LOC502028	XM_577459.1	XM_577459.1		502028	62662006	XM_577459.1	LOC502028	XP_577459.1	ILMN_1370078	0006100692	S	383	GGTACACACAGCAGATGTAGGGCTCTCCCTGGACATTCTCTTTGGGAAGG					PREDICTED: Rattus norvegicus similar to POU domain, class 5, transcription factor 1-like protein 2 (LOC502028), mRNA.					
Rattus norvegicus	RefSeq	GI_62718187-S	ILMN_69855	LOC501316	XM_580187.1	XM_580187.1		501316	62718187	XM_580187.1	LOC501316	XP_580187.1	ILMN_1371086	0005340603	S	355	CTTTGTCTTGGGAACAGCACCTGCACCAGAGACTGGAGACTTCCTGCAAG					PREDICTED: Rattus norvegicus LOC501316 (LOC501316), mRNA.					
Rattus norvegicus	RefSeq	GI_56605627-S	ILMN_290158	SFT2D1	NM_001008302.1	NM_001008302.1		292305	56605627	NM_001008302.1	Sft2d1	NP_001008303.1	ILMN_1354859	0002100603	S	556	TGCCCAGGAGGAGTGACTGGGAACTGATGCTGTGCCTGCTCCAGTGATCA	1	-	47050029-47050078	1q11	Rattus norvegicus SFT2 domain containing 1 (Sft2d1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62647219-S	ILMN_279433	RGD1564321_PREDICTED	XM_001055123.1	XM_001055123.1		500114	109473460	XM_001055123.1	RGD1564321_predicted	XP_001055123.1	ILMN_1368130	0004070731	S	503	TCAAGGAGGCTATCACACCCTTACAGGAGCTTTTCCTTCACACCACCGGC				4q24	PREDICTED: Rattus norvegicus similar to diamine oxidase-like protein 2 (predicted) (RGD1564321_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50979279-A	ILMN_277988	ENC1	NM_001003401.1	NM_001003401.1		294674	50979279	NM_001003401.1	Enc1	NP_001003401.1	ILMN_1376802	0005270170	S	2431	GGGCTTTTCCCTTGTTGTACCTCATTCAGCTTCTGATTTCCACGGCCCCA	2	+	27730541-27730590	2q12	Rattus norvegicus ectodermal-neural cortex 1 (Enc1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667526-S	ILMN_265939	RGD1565857_PREDICTED	XM_001053900.1	XM_001053900.1		309266	109462276	XM_001053900.1	RGD1565857_predicted	XP_001053900.1	ILMN_1364673	0004210632	S	1416	AAAGAGCAGGGGACATGGGTGTTGCAGAAGAGCAGCGGGGCCAGGGTAAA				Xq37	PREDICTED: Rattus norvegicus similar to paraneoplastic antigen like 5 (predicted) (RGD1565857_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644368-S	ILMN_49678	LOC502595	XM_578081.1	XM_578081.1		502595	62644368	XM_578081.1	LOC502595	XP_578081.1	ILMN_1370174	0000780593	S	89	CCCCAGCCCAAAATTGAAGGTCTTGACGCTCCCAAGAGAGTTGCTATGGC				2q42	PREDICTED: Rattus norvegicus similar to UPF0197 protein C11orf10 homolog (LOC502595), mRNA.					
Rattus norvegicus	RefSeq	GI_9945329-S	ILMN_277097	ADAM17	NM_020306.1	NM_020306.1		57027	9945329	NM_020306.1	Adam17	NP_064702.1	ILMN_1360815	0002450670	S	3671	CTCAGCAAGCAGACACTCGCGTTACCTCAGGCTTTGGGGCTTCAGGACCC	6	-	41882807-41882856	6q16	Rattus norvegicus ADAM metallopeptidase domain 17 (Adam17), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IMP]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	TACE	TACE
Rattus norvegicus	RefSeq	GI_58865453-A	ILMN_300803	SCYL1	NM_001011938.1	NM_001011938.1		293684	58865453	NM_001011938.1	Scyl1	NP_001011938.1	ILMN_1376547	0006350022	S	2309	GGAGGCTGAAAGCAGGCAGGTGAAGGCAGAGCTAGCCCGAAAAAAGCGAG	1	-	208385702-208385739:208385840-208385851	1q43	Rattus norvegicus SCY1-like 1 (S. cerevisiae) (Scyl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666168-S	ILMN_61471	LOC502434	XM_577915.1	XM_577915.1		502434	62666168	XM_577915.1	LOC502434	XP_577915.1	ILMN_1354978	0001780167	S	599	GTCTGCTGCAGGAGGTGTGGGCATTCCATTTCCTGTGGATCTGGATGGAA					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502434), mRNA.					
Rattus norvegicus	RefSeq	GI_8393044-S	ILMN_59143	CAPZA3	NM_017164.2	NM_017164.2		29324	82617577	NM_017164.2	Capza3	NP_058860.2	ILMN_1365294	0006350064	S	870	TACGGAGGGATCTTCCAGTGACACGCACTTTGATTGACTGGCAACGGATC	4	+	177163894-177163943	4q44	Rattus norvegicus capping protein (actin filament) muscle Z-line, alpha 3 (Capza3), mRNA.	A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments [goid 8290] [evidence IPI]; A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments [goid 8290] [evidence IEA]; A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments [goid 8290] [evidence IEA]	The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Cappa3	Cappa3
Rattus norvegicus	RefSeq	GI_62647961	ILMN_297395	TPI1	NM_022922.1	NM_022922.1		24849	12621073	NM_022922.1	Tpi1	NP_075211.1	ILMN_1650818	0000580020	S	1228	CCTTTTACTCTTAGAGGCCTGGGATATCCCCTCCCTGTAGTGCCGAAGCC	4	-	160933511-160933560	4q42	Rattus norvegicus triosephosphate isomerase 1 (Tpi1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses [goid 6098] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis [goid 19682] [evidence ISS]	Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate [goid 4807] [evidence IDA]; Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate [goid 4807] [evidence IEA]; Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate [goid 4807] [evidence ISS]; Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate [goid 4807] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence ISS]	Tpi	Tpi
Rattus norvegicus	RefSeq	GI_55741480-S	ILMN_268871	MME	NM_012608.2	NM_012608.2		24590	55741480	NM_012608.2	Mme	NP_036740.1	ILMN_1352558	0006550168	S	2957	TCCGCCATTTACCCACTTGAGTGATGTTGAGACTCTTCAGCCCCCTACAG	2	+	153114007-153114056	2q31	Rattus norvegicus membrane metallo endopeptidase (Mme), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 6518] [evidence IMP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IMP]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93576; CD10; Nep	MGC93576; CD10; Nep
Rattus norvegicus	RefSeq	GI_62639637-S	ILMN_269991	KLK15_PREDICTED	XM_001080538.1	XM_001080538.1		292873	109461854	XM_001080538.1	Klk15_predicted	XP_001080538.1	ILMN_1374984	0006110605	S	392	TCCTCGGTGAGGACTGCGTGGTGTCAGGCTGGGGCCTGTTATCAGACAAC					PREDICTED: Rattus norvegicus kallikrein 15 (predicted) (Klk15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667258-S	ILMN_52578	LOC501621	XM_577021.1	XM_577021.1		501621	62667258	XM_577021.1	LOC501621	XP_577021.1	ILMN_1362907	0005690739	S	1296	GGAGCAGGAGGGAAGGGGAGAAGCAGAAGAGGTTGAGGAGAAAGAAGCCC				Xq35	PREDICTED: Rattus norvegicus similar to nuclear RNA export factor 7 (LOC501621), mRNA.					
Rattus norvegicus	RefSeq	GI_28212217-S	ILMN_293766	TAAR8C	NM_175600.1	NM_175600.1		319105	28212217	NM_175600.1	Taar8c	NP_783190.1	ILMN_1369189	0000430673	S	778	ACCTTGGGGGTCACTGTCCTGGCATTTATTGTCTCATGGCTCCCATACAC	1	+	21815411-21815460	1p12	Rattus norvegicus trace-amine-associated receptor 8c (Taar8c), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta10	Ta10
Rattus norvegicus	RefSeq	GI_62718121-S	ILMN_66591	LOC301824	XM_229303.3	XM_229303.3		301824	62718121	XM_229303.3	LOC301824	XP_229303.3	ILMN_1363405	0006380500	S	930	CTGCAGGATCGGGTAGGGATGCTCACACGGGCTGAACGAAATCAGTTGGT					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC301824), mRNA.					
Rattus norvegicus	RefSeq	GI_27683408-S	ILMN_284659	DIRAS2_PREDICTED	XM_001053689.1	XM_001053689.1		291006	109505496	XM_001053689.1	Diras2_predicted	XP_001053689.1	ILMN_1359054	0004050162	S	817	TCGATGGCAAGAAGAGCAAGCAGCAGAAGAGGAAGGAGAAGCTCAAGGGC				17p14	PREDICTED: Rattus norvegicus DIRAS family, GTP-binding RAS-like 2 (predicted) (Diras2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661838-S	ILMN_63945	LOC498563	XM_573838.1	XM_573838.1		498563	62661838	XM_573838.1	LOC498563	XP_573838.1	ILMN_1369907	0005900333	S	0	ATGAGAGGCAAGTACTACCTATTTTGCACTGGTGGCCAGTGGGCTAAAAG				15q23	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L5 (LOC498563), mRNA.					
Rattus norvegicus	RefSeq	GI_9506710-S	ILMN_263216	GALR3	NM_019173.1	NM_019173.1		29235	9506710	NM_019173.1	Galr3	NP_062046.1	ILMN_1368934	0003780471	S	1041	ACGCCAGGCCTCGTGGTTGGAGTATGGAGCCCAGAGGGGATGCTCTGCGT				7q34	Rattus norvegicus galanin receptor 3 (Galr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IDA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_51036653-S	ILMN_298683	MAFG	NM_022386.2	NM_022386.2		64188	51036653	NM_022386.2	Mafg	NP_071781.1	ILMN_1364637	0003990368	S	1243	GTGGAAGGTGTGTCAGTGTGTCCTGCGATGGGTCCGGTGTCACTGTTTAC	10	-	110020069-110020118	10q32.3	Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian) (Mafg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Behavior in a fully developed and mature organism [goid 30534] [evidence IEA]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermal cell differentiation [goid 45604] [evidence IEA]; Any process that modulates the frequency, rate or extent of epidermal cell differentiation [goid 45604] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_53850599-S	ILMN_300382	SRFBP1	NM_001005536.1	NM_001005536.1		291469	53850599	NM_001005536.1	Srfbp1	NP_001005536.1	ILMN_1351300	0002510685	S	1306	TCCTGGGAAGCAAGCAGGAGGCGGAAGGAGCAGCAGTCCAAAATCGCTGT	18	+	47870764-47870813	18q11	Rattus norvegicus serum response factor binding protein 1 (Srfbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		MGC95245; p49/STRAP	MGC95245; p49/STRAP
Rattus norvegicus	RefSeq	GI_62718211-S	ILMN_289337	LOC690482	XM_001074567.1	XM_001074567.1		690482	109513500	XM_001074567.1	LOC690482	XP_001074567.1	ILMN_1352798	0000360280	S	240	CCTAGAGTATCAGGACGCTGGGAGAGAAACATCTTCCCCTGAAACTGCCC	Un|NW_047883.1	+	1372415-1372428:1372794-1372829		PREDICTED: Rattus norvegicus hypothetical protein LOC690482 (LOC690482), mRNA.					
Rattus norvegicus	RefSeq	GI_19173755-S	ILMN_264435	ERG	NM_133397.1	NM_133397.1		170909	19173755	NM_133397.1	Erg	NP_596888.1	ILMN_1367872	0006940609	S	1538	GAGCTGGGGAAGGAAGCCGGGGAAAGAAAACCAAAGACTCACAGGGGAGG	11	-	35655780-35655829	11q11	Rattus norvegicus avian erythroblastosis virus E-26 (v-ets) oncogene related (Erg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.22757	ILMN_273799	TARS	NM_001006976.1	NM_001006976.1		294810	55741822	NM_001006976.1	Tars	NP_001006977.1	ILMN_1530369	0006110400	S	1400	TTGTTTGGATTTTCTTCGCACGGTATATAGTGTCTTTGGATTTTCATTTA	2	-	60772638-60772687	2q16	Rattus norvegicus threonyl-tRNA synthetase (Tars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6435] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr) [goid 4829] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC95288	MGC95288
Rattus norvegicus	RefSeq	GI_55741822-S	ILMN_273799	TARS	NM_001006976.1	NM_001006976.1		294810	55741822	NM_001006976.1	Tars	NP_001006977.1	ILMN_1358103	0004590609	S	2107	TGCGCAGTAAGCAGGCAGAGGAGGAGTTTTAACAGGCACATGGCCCGAGC	2	-	60766182-60766200:60766201-60766231	2q16	Rattus norvegicus threonyl-tRNA synthetase (Tars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6435] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr) [goid 4829] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC95288	MGC95288
Rattus norvegicus	RefSeq	GI_62654610-S	ILMN_294310	RGD1564811_PREDICTED	XM_001065631.1	XM_001065631.1		316157	109514122	XM_001065631.1	RGD1564811_predicted	XP_001065631.1	ILMN_1357349	0002260070	S	1656	GCTTTTCCCACCAGACAGTAACATCCGCGTGCTGTTCCAATACCAGCCTG				9q11	PREDICTED: Rattus norvegicus similar to hypothetical protein phosphatase 2C domain containing protein (predicted) (RGD1564811_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650020-S	ILMN_267119	MASP2	NM_172043.1	NM_172043.1		64459	78042604	NM_172043.1	Masp2	NP_742040.1	ILMN_1361635	0004540021	S	1995	CCTGGGGTTCTATTAACTGTGGGGGGTCAGAACAGTATGGGGTCTACACG	5	+	165696326-165696375	5q36	Rattus norvegicus mannan-binding lectin serine peptidase 2 (Masp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 1867] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway [goid 6956] [evidence NAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MAp19; MASP-2	MAp19; MASP-2
Rattus norvegicus	RefSeq	GI_62658586-S	ILMN_58416	LOC304353	XM_221996.3	XM_221996.3		304353	62658586	XM_221996.3	LOC304353	XP_221996.3	ILMN_1361917	0004610609	S	358	GCAGGACCTCAGCACCAACTGCTGAAACTTCTGTCTGGCTGCATGTACGC				12q11	PREDICTED: Rattus norvegicus similar to family with sequence similarity 55, member C (LOC304353), mRNA.					
Rattus norvegicus	RefSeq	GI_62656875	ILMN_284097	ABI3	NM_001013118.1	NM_001013118.1		303476	61557011	NM_001013118.1	Abi3	NP_001013136.1	ILMN_1650202	0001340092	S	790	TGTCTCGCAAGAGCATAAAGGCGCCCGCTACACCTGCCTCTGCCACGCTG	10	-	84545088-84545137	10q31	Rattus norvegicus ABI family, member 3 (Abi3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_21914882-S	ILMN_161714	GHSR	NM_032075.2	NM_032075.2			21914882	NM_032075.2	Ghsr		ILMN_2040073	0000240768	S	2775	GTGATTTGTGCTTTGCCCCACCCTGACAGTCTCTCTCTGTGTGCCTTCAG						The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence ISS]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence ISS]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence IEA]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence ISS]; Any process that increases appetite [goid 32100] [evidence ISS]; Any process that increases appetite [goid 32100] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production [goid 32691] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42536] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42536] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction of the hindgut, the posterior part of the alimentary canal, including the rectum, and the large intestine [goid 43134] [evidence IMP]; Any process that increases the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43568] [evidence IEA]; Any process that increases the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43568] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45409] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 45923] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IDA]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence IEA]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence ISS]	 [goid 1616] [evidence TAS];  [goid 1616] [evidence IDA];  [goid 1616] [evidence ISS];  [goid 1616] [evidence IMP];  [goid 1616] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with the growth hormone receptor [goid 5131] [evidence TAS]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence ISS]; Combining with growth hormone-releasing hormone to initiate a change in cell activity [goid 16520] [evidence ISS]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_47576702-S	ILMN_294548	OLR171	NM_001000176.1	NM_001000176.1		293318	47576702	NM_001000176.1	Olr171	NP_001000176.1	ILMN_1349618	0002690402	S	758	CCTATGTCCCAGCCTTCTTCAACTTTTTCACTCATCGCTTTGGGAGAACC	1	+	162564273-162564322	1q33	Rattus norvegicus olfactory receptor 171 (Olr171), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr171	Olr171
Rattus norvegicus	RefSeq	GI_56090446-S	ILMN_289443	ZNF672	NM_001007669.1	NM_001007669.1		303165	56090446	NM_001007669.1	Znf672	NP_001007670.1	ILMN_1365781	0000540128	S	2710	GGCCCAAGAAAAGTTACCTGAAGTCCTGGGCAATAGCAAGATGCAAAGCC	10	-	43953399-43953448	10q22	Rattus norvegicus zinc finger protein 672 (Znf672), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93893	MGC93893
Rattus norvegicus	RefSeq	GI_62654282	ILMN_49362	LOC363144	XM_343481.2	XM_343481.2		363144	62654282	XM_343481.2	LOC363144	XP_343482.1	ILMN_1649729	0003360411	S	972	CTTAGAGGAAGAGGCAGAAATGGCCGGGATGAGTTGGTGGAGAGCCGGAC				8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D330022A01 gene (predicted) (LOC363144), mRNA.					
Rattus norvegicus	RefSeq	GI_62651998-S	ILMN_70122	TMEM16D_PREDICTED	XM_235024.3	XM_235024.3		299714	62651998	XM_235024.3	Tmem16d_predicted	XP_235024.3	ILMN_1353101	0006940433	S	2717	GGCAGCAAGGAGCCGACTGACGGAGGTGGAGTCCCGCTGTCGTGAAATCA				7q13	PREDICTED: Rattus norvegicus transmembrane protein 16D (eight membrane-spanning domains) (predicted) (Tmem16d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646959-S	ILMN_66686	NRF1_PREDICTED	XM_231566.3	XM_231566.3		312195	62646959	XM_231566.3	Nrf1_predicted	XP_231566.3	ILMN_1372548	0006130017	S	1700	AGAGGTCTGGGCAAAGCACCACCAGGATACCAGGGAACAGGACCCCAAAC				4q22	PREDICTED: Rattus norvegicus nuclear respiratory factor 1 (predicted) (Nrf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664169	ILMN_299849	IWS1	NM_001034918.1	NM_001034918.1		291705	77917529	NM_001034918.1	Iws1	NP_001030090.1	ILMN_1649758	0004200142	S	2313	CTGGAGATCCTGGCTTCTGTGCCCGTGCGAGAGTCCCAATGCCATCAAAC	18	+	24514131-24514180	18p12	Rattus norvegicus IWS1 homolog (S. cerevisiae) (Iws1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]			RGD1304762; MGC124986	RGD1304762; MGC124986
Rattus norvegicus	RefSeq	GI_62664741-S	ILMN_58517	SDCCAG33_PREDICTED	XM_225688.4	XM_225688.4		307217	109506852	XM_225688.4	Sdccag33_predicted	XP_225688.4	ILMN_1368226	0006660576	S	3074	GCCTGAAGGACCTCTCCAAGCTGCCACTCAGTCAGATCCAAGAGCAGCAG	18	-	80537610-80537659	18q12.3	PREDICTED: Rattus norvegicus serologically defined colon cancer antigen 33 (predicted) (Sdccag33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882677-S	ILMN_59197	LOC367543	XM_346204.1	XM_346204.1		367543	34882677	XM_346204.1	LOC367543	XP_346205.1	ILMN_1369061	0001050592	S	261	CCCTCTCTCTATCTGGTCAATGCCATGGATACCCAAGCTGTGGAGCATAA					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367543), mRNA.					
Rattus norvegicus	RefSeq	GI_62645827-S	ILMN_54617	MRPS5_PREDICTED	XM_215833.4	XM_215833.4		296134	109468782	XM_215833.4	Mrps5_predicted	XP_215833.2	ILMN_1358174	0007040082	S	1252	GACTGGCAAGACGTAAAGGCCATGCAGGGAATGAAGCGCTCTGTGTGGTT	3	+	115138731-115138780	3q36	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S5 (predicted) (Mrps5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34858592	ILMN_287768	RASSF8_PREDICTED	XM_001074931.1	XM_001074931.1		312846	109474489	XM_001074931.1	Rassf8_predicted	XP_001074931.1	ILMN_1650635	0002940053	S	1113	GCAGGCCACCAAGAGGTTACAGGACAAGGAGCAGGAGCTGGAGCAGTTGA				4q44	PREDICTED: Rattus norvegicus Ras association (RalGDS/AF-6) domain family 8 (predicted) (Rassf8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646998-S	ILMN_68450	SLC35B4_PREDICTED	XM_216122.4	XM_216122.4		296969	109471837	XM_216122.4	Slc35b4_predicted	XP_216122.2	ILMN_1349823	0000730333	S	958	ACGTGTGCATCCGGGGTGTGTTCATCCTTACCACAGAGTGCAGCTCCCTC	4	-	61483412-61483461	4q22	PREDICTED: Rattus norvegicus solute carrier family 35, member B4 (predicted) (Slc35b4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667199-S	ILMN_49073	LOC302324	XM_228445.3	XM_228445.3		302324	62667199	XM_228445.3	LOC302324	XP_228445.3	ILMN_1350221	0000380050	S	2845	CAATTGCCTGTACTGAACTGGGCCATGGAAAATGCGAGGGATGGCTTTGG				Xq31	PREDICTED: Rattus norvegicus similar to testis protein TEX16 (LOC302324), mRNA.					
Rattus norvegicus	RefSeq	GI_62653586-S	ILMN_292992	RGD1564560_PREDICTED	XM_001067324.1	XM_001067324.1		500988	109484607	XM_001067324.1	RGD1564560_predicted	XP_001067324.1	ILMN_1351983	0005130435	S	3466	GCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCC				8q22	PREDICTED: Rattus norvegicus similar to RCK (predicted) (RGD1564560_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638214-S	ILMN_269198	RGD1566017_PREDICTED	XM_001069000.1	XM_001069000.1		365037	109460435	XM_001069000.1	RGD1566017_predicted	XP_001069000.1	ILMN_1374706	0004230070	S	3810	AACTGGTAACCGCAGCCAGACTCTTCAAACTGCCACCAAGCCCTGAGGCC				1p13	PREDICTED: Rattus norvegicus similar to SAM and SH3 domain containing protein 1 (Proline-glutamate repeat-containing protein) (predicted) (RGD1566017_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653696-S	ILMN_262843	UBE2Q2_PREDICTED	XM_001072896.1	XM_001072896.1		363065	109484734	XM_001072896.1	Ube2q2_predicted	XP_001072896.1	ILMN_1363583	0005390095	S	1524	AGTGGTGTTACCTGTTCTCTCAGGAGGGTACGTGTTGGGCGGAGGAGCAC				8q24	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2Q (putative) 2 (predicted) (Ube2q2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57528424-S	ILMN_276613	SFRS2	NM_001009720.1	NM_001009720.1		494445	57528424	NM_001009720.1	Sfrs2	NP_001009720.1	ILMN_1351635	0004670053	S	853	GCCGCTTAACAGAGGACTTTGGGGGAAAGGACCACAAACTCAGTCCATCG	10	-	106954626-106954675	10q32.3	Rattus norvegicus splicing factor, arginine/serine-rich 2 (SC-35) (Sfrs2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC73009	MGC73009
Rattus norvegicus	RefSeq	GI_51948371-S	ILMN_278029	COPS3	NM_001004200.1	NM_001004200.1		287367	51948371	NM_001004200.1	Cops3	NP_001004200.1	ILMN_1350917	0002100066	S	1261	AGAGCATGGGCTCACAAGAAGATGACTCAGGAAACAAGCCCTCCAGCTAC	10	-	46140096-46140144:46140451-46140451	10q22	Rattus norvegicus COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) (Cops3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence ISS]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94156	MGC94156
Rattus norvegicus	RefSeq	GI_19424191-S	ILMN_279555	CBWD1	NM_133535.1	NM_133535.1		171057	19424191	NM_133535.1	Cbwd1	NP_598219.1	ILMN_1363173	0004760576	S	1188	CTGTGGCAGAGACAAAAGAACAAACGACAGCACCAGGCCAAGATGGAGCC	1	-	228360810-228360859	1q51	Rattus norvegicus COBW domain containing 1 (Cbwd1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653698-S	ILMN_270063	FBXO22	NM_001037770.1	NM_001037770.1		300724	83642813	NM_001037770.1	Fbxo22	NP_001032859.1	ILMN_1355271	0006200500	S	1499	TAAGTGCCCTGGGAGGTTGAGAGGCCACCCGGAAGGTGGAGGTTCAAGTA	8	+	58767322-58767371	8q24	Rattus norvegicus F-box protein 22 (Fbxo22), mRNA.				MGC124731	MGC124731
Rattus norvegicus	RefSeq	GI_6981629-S	ILMN_292646	TAT	NM_012668.1	NM_012668.1		24813	6981629	NM_012668.1	Tat	NP_036800.1	ILMN_1367659	0003060040	S	2092	CCTAAAATAGGAGGACACCTCACTGAAGGAGAAAGAAGGGACCGGAGGCC	19	+	39865105-39865154	19q12	Rattus norvegicus tyrosine aminotransferase (Tat), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence TAS]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9074] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]	Catalysis of the reaction: L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate [goid 4838] [evidence TAS]; Catalysis of the reaction: L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate [goid 4838] [evidence IEA]; Catalysis of the reaction: L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate [goid 4838] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine = 1-aminocyclopropane-1-carboxylate + methylthioadenosine [goid 16847] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577514-S	ILMN_283957	OLR495	NM_001000310.1	NM_001000310.1		295759	47577514	NM_001000310.1	Olr495	NP_001000310.1	ILMN_1361993	0006220047	S	777	CCTACAACCACGGACTAATCACTCCTTAGACACTGACAAGATGGCCTCTG	3	-	69531045-69531094	3q24	Rattus norvegicus olfactory receptor 495 (Olr495), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr495	Olr495
Rattus norvegicus	RefSeq	GI_58865955-A	ILMN_289552	TSSC1	NM_001012192.1	NM_001012192.1		362721	58865955	NM_001012192.1	Tssc1	NP_001012192.1	ILMN_1376645	0005670093	S	481	TGGCCTGTGTCGTGTGGGAACCGATGGGGGATGGGAAGAAGGTCATTTCC	6	+	46709202-46709208:46725845-46725887	6q16	Rattus norvegicus tumor suppressing subtransferable candidate 1 (Tssc1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648826-S	ILMN_294319	DNAI1	NM_001024342.1	NM_001024342.1		500442	66730472	NM_001024342.1	Dnai1	NP_001019513.1	ILMN_1359284	0003290300	S	2115	CGAAAGATGCCGAAGGAGAAGAAGGGGCAGGAAGTGCAGAAGGGTCCAGC	5	+	59057089-59057103:59059853-59059887	5q22	Rattus norvegicus dynein, axonemal, intermediate chain 1 (Dnai1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51592087-S	ILMN_279153	USP2	NM_053774.2	NM_053774.2		115771	51592087	NM_053774.2	Usp2	NP_446226.2	ILMN_1358226	0001570632	S	1827	TGGGAGGTCACTATACAGCCTACTGCCGAAGTCCGGTTACGGGCGAATGG	8	+	47075557-47075606	8q22	Rattus norvegicus ubiquitin specific peptidase 2 (Usp2), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	MGC93284	MGC93284
Rattus norvegicus	RefSeq	GI_62642716-S	ILMN_57743	LOC361876	XM_342170.2	XM_342170.2		361876	62642716	XM_342170.2	LOC361876	XP_342171.2	ILMN_1374458	0003940095	S	903	ACAGTGGCCAGGATCATCACAGCCCGTCTGACAGCACAACTGCTGCTTCC					PREDICTED: Rattus norvegicus similar to autophagy 10-like (LOC361876), mRNA.					
Rattus norvegicus	RefSeq	GI_56799426-S	ILMN_289091	RCAN2	NM_175578.3	NM_175578.3		140666	56799426	NM_175578.3	Rcan2	NP_783168.1	ILMN_1375039	0002100441	S	3076	TGCAGAGCAAGGGATTCTCGCACTAGGTTGAGCACGGAGAGGGGAGAAGG	9	-	12623343-12623392	9q12	Rattus norvegicus regulator of calcineurin 2 (Rcan2), mRNA.		A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]		MGC93057; Zaki-4; Dcip2	MGC93057; Zaki-4; Dcip2
Rattus norvegicus	RefSeq	GI_62648934-S	ILMN_287749	RGD1305807	NM_001025276.1	NM_001025276.1		298077	70608180	NM_001025276.1	RGD1305807	NP_001020447.1	ILMN_1351420	0003140446	S	2231	GGTCGAGTGCATTTGCAGGGGACTCGGGTTTGGTTCCCAGCGTCCACGTT	5	+	62395272-62395321	5q22	Rattus norvegicus hypothetical LOC298077 (RGD1305807), mRNA.				MGC114401	MGC114401
Rattus norvegicus	RefSeq	GI_47576006-S	ILMN_268768	OLR1449	NM_001000775.1	NM_001000775.1		405050	47576006	NM_001000775.1	Olr1449	NP_001000775.1	ILMN_1361014	0004540131	S	612	TATTCTTGTACTGATACCTTTCCTGGCCATCCTAGCTTCCTATGCTCAGG	10	+	44881923-44881972	10q22	Rattus norvegicus olfactory receptor 1449 (Olr1449), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1449	Olr1449
Rattus norvegicus	RefSeq	GI_48040436-S	ILMN_286387	OIT3	NM_001001507.1	NM_001001507.1		294559	48040436	NM_001001507.1	Oit3	NP_001001507.1	ILMN_1374871	0006400064	S	1973	GAATTGTATCTGTCCTCATGGGAGGGCATCGCCTTCACTTCCTCCGTTCC	Un|NW_047852.1	+	137715-137764		Rattus norvegicus oncoprotein induced transcript 3 (Oit3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Lzp	Lzp
Rattus norvegicus	RefSeq	GI_40786462-S	ILMN_281303	ATP6V1D	NM_199386.1	NM_199386.1		299159	40786462	NM_199386.1	Atp6v1d	NP_955418.1	ILMN_1361269	0005900348	S	1129	CCTTCCTACCCACTTGTAAACCTTGGCACTGTTGTCTGAGGCTGTGCAGC	6	-	101479537-101479586	6q24	Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), mRNA.	A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]		Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34870097-S	ILMN_66149	LOC363851	XM_344060.1	XM_344060.1		363851	34870097	XM_344060.1	LOC363851	XP_344061.1	ILMN_1366986	0002940402	S	241	GCGACCCAGCTACAGACCCAGGTTGCAGTAACGCTGTGAGACGTGCAATA					PREDICTED: Rattus norvegicus similar to hypothetical protein C230069C04 (LOC363851), mRNA.					
Rattus norvegicus	RefSeq	GI_8393034-S	ILMN_296538	PNCK	NM_017275.1	NM_017275.1		29660	8393034	NM_017275.1	Pnck	NP_058971.1	ILMN_1357156	0003390446	S	1517	TGCATTGCGTGGCTGTTCTGTGCTTTGCTGACTGTGGGTGGTCCTGCTTG	X	-	159555577-159555626	Xq37	Rattus norvegicus pregnancy upregulated non-ubiquitously expressed CaM kinase (Pnck), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [pmid 11264466] [evidence TAS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Camk1b	Camk1b
Rattus norvegicus	RefSeq	GI_62647839-S	ILMN_275852	LSM3_PREDICTED	XM_001073506.1	XM_001073506.1		297455	109473885	XM_001073506.1	Lsm3_predicted	XP_001073506.1	ILMN_1373878	0003360068	S	620	CTCCAGCCCTCCAGTCAGTGTGACCGCCTTGCTCTTCAGGAGTTGGTTTG				4q34	PREDICTED: Rattus norvegicus LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27229229-S	ILMN_278745	CCR9	NM_172329.1	NM_172329.1		282832	27229229	NM_172329.1	Ccr9	NP_758832.1	ILMN_1360631	0000540332	S	2040	GGAGAATATGTTGGGATGGTGGGGACCTAGCCTTTGGGACTTCCTTAGGG	8	+	128541454-128541503	8q32	Rattus norvegicus chemokine (C-C motif) receptor 9 (Ccr9), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654403-S	ILMN_55202	RGD1562243_PREDICTED	XM_343495.3	XM_343495.3		363156	109484032	XM_343495.3	RGD1562243_predicted	XP_343496.3	ILMN_1367805	0001410372	S	1554	CATCAAGCGTATGCGGGCTCAGCTTCCTCGTGTCAAAGTCCATGCCTACT	8	-	118621587-118621621:118622171-118622185	8q32	PREDICTED: Rattus norvegicus similar to F-box and leucine-rich repeat protein 2 (predicted) (RGD1562243_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646923-S	ILMN_283760	LOC685756	XM_001065145.1	XM_001065145.1		685756	109471827	XM_001065145.1	LOC685756	XP_001065145.1	ILMN_1366524	0002810050	S	1238	GGCAGTCCCTGGGTAGGGGATCTTTCTATGCCCTTTGGACTTTGGGGTCC	4	-	51421101-51421150	4q22	PREDICTED: Rattus norvegicus hypothetical protein LOC685756 (LOC685756), mRNA.					
Rattus norvegicus	RefSeq	GI_62639910-S	ILMN_69402	LOC365257	XM_344897.2	XM_344897.2		365257	62639910	XM_344897.2	LOC365257	XP_344898.2	ILMN_1349610	0001500494	S	1047	GGTAGAGAGGTGGGCACTGGAGCCCCTTTATCATCAAAGAAAGCTCAGCC					PREDICTED: Rattus norvegicus similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog) (LOC365257), mRNA.					
Rattus norvegicus	RefSeq	GI_27465630-S	ILMN_285796	PCYT1B	NM_173151.1	NM_173151.1		286936	27465630	NM_173151.1	Pcyt1b	NP_775174.1	ILMN_1357159	0005420575	S	1637	GAGGTGGCTAAGTGCTTCCAAAATGGGCACGTCAAAGACCAGTTCCAGCC	X	+	81086735-81086784	Xq22	Rattus norvegicus phosphate cytidylyltransferase 1, choline, beta (Pcyt1b), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline [goid 4105] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	CCT-beta; CTB; Cctbeta	CCT-beta; CTB; Cctbeta
Rattus norvegicus	RefSeq	GI_62657657-S	ILMN_280456	RDA279	XM_001070821.1	XM_001070821.1		245975	109493915	XM_001070821.1	Rda279	XP_001070821.1	ILMN_1358039	0004560088	S	1306	TGGAGGTTGCTCACAGCTCTCAAGTTGTTGTGTCTGGAAGCCGAGCGGTT				11q11	PREDICTED: Rattus norvegicus hypothetical protein RDA279 (Rda279), mRNA.					
Rattus norvegicus	RefSeq	GI_62653550-S	ILMN_286999	TECTA_PREDICTED	XM_001059588.1	XM_001059588.1		300653	109484536	XM_001059588.1	Tecta_predicted	XP_001059588.1	ILMN_1354901	0003520164	S	7178	AGTCGGTCTGTCCCGTGCTCTTTCAGGATCGCCGTGGTTACAGACAAGGC				8q22	PREDICTED: Rattus norvegicus tectorin alpha (predicted) (Tecta_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656777-S	ILMN_67961	LOC287622	XM_220861.3	XM_220861.3		287622	62656777	XM_220861.3	LOC287622	XP_220861.3	ILMN_1360052	0005910402	S	2874	TCAAGTGCCTGAGGAGGCCACTGCATCAGGCGGCCTTTAGGTGTAGTTAG				10q26	PREDICTED: Rattus norvegicus similar to adaptor molecule SRCASM (LOC287622), mRNA.					
Rattus norvegicus	RefSeq	GI_13592060-S	ILMN_69988	RPL36A	NM_031105.1	NM_031105.1		81769	13592060	NM_031105.1	Rpl36a	NP_112367.1	ILMN_1365467	0004730288	S	4	CCGGGTCTCTCGTTTTCATCGCAGACACTTCTGCTGCAAAGATGGTCAAC				6q24	Rattus norvegicus large subunit ribosomal protein L36a (Rpl36a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577110-S	ILMN_296089	OLR322	NM_001000762.1	NM_001000762.1		405036	47577110	NM_001000762.1	Olr322	NP_001000762.1	ILMN_1358148	0004590750	S	603	TGGGATGCTCACTACGCTGTGGTTTTTCTTGCTCCTGATATCTTACATGG	1	-	214920645-214920694	1q43	Rattus norvegicus olfactory receptor 322 (Olr322), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr322	Olr322
Rattus norvegicus	RefSeq	GI_62641538	ILMN_296725	CLRN3	NM_001014026.1	NM_001014026.1		309082	62078782	NM_001014026.1	Clrn3	NP_001014048.1	ILMN_1650583	0003440537	S	1672	GCTGGGTTCCCATGATGTCAGTGGAAGCGTGCTGGGTCCTCAACCTTGTG	1	-	195132973-195133022	1q41	Rattus norvegicus clarin 3 (Clrn3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1305043	RGD1305043
Rattus norvegicus	RefSeq	GI_62649276-S	ILMN_270638	LOC313391	XM_001056029.1	XM_001056029.1		313391	109476783	XM_001056029.1	LOC313391	XP_001056029.1	ILMN_1356367	0005390594	S	888	TGATAAGCAGACTGATTCTGTGACGGCTGGAGATGCTCGTGACAAGGCTG				5q33	PREDICTED: Rattus norvegicus similar to APG4 autophagy 4 homolog C (LOC313391), mRNA.					
Rattus norvegicus	RefSeq	GI_62638654-S	ILMN_60319	LOC499048	XM_574329.1	XM_574329.1		499048	62638654	XM_574329.1	LOC499048	XP_574329.1	ILMN_1350842	0004230348	S	677	GGATTCTCCACGACCCTGAGAACACAATTTGGAAATCTCAGGTTTAATGG					PREDICTED: Rattus norvegicus similar to kinesin family member 25 isoform 1 (LOC499048), mRNA.					
Rattus norvegicus	RefSeq	GI_47577602-S	ILMN_275047	OLR533	NM_001000673.1	NM_001000673.1		404876	47577602	NM_001000673.1	Olr533	NP_001000673.1	ILMN_1359215	0002650086	S	582	ACTTCTGCTCTTCGTCTTTGTGAGCTCCATTGAGGTACTCACTATCTTGG	3	-	70381274-70381323	3q24	Rattus norvegicus olfactory receptor 533 (Olr533), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr533	Olr533
Rattus norvegicus	RefSeq	GI_62651975-S	ILMN_68989	LOC503130	XM_580260.1	XM_580260.1		503130	62651975	XM_580260.1	LOC503130	XP_580260.1	ILMN_1360846	0005420279	S	266	GTGGTCACAGCTTAATAGCCAGGACAGGCAGAAGGCACTGCGGAAGGGAC					PREDICTED: Rattus norvegicus LOC503130 (LOC503130), mRNA.					
Rattus norvegicus	RefSeq	GI_62643037-I	ILMN_51141	RAI14_PREDICTED	XM_574862.1	XM_574862.1		294804	62643037	XM_574862.1	Rai14_predicted	XP_574862.1	ILMN_1375727	0006290746	S	813	CATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAA				2q16	PREDICTED: Rattus norvegicus retinoic acid induced 14 (predicted) (Rai14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645817-S	ILMN_268410	ITPRIPL1	NM_001025043.1	NM_001025043.1		499885	68163518	NM_001025043.1	Itpripl1	NP_001020214.1	ILMN_1368969	0003610551	S	1572	TGGCAGCACAGGATGCTTTCCCAGCGGCTCCAGGACCTTCTCTGGTTCTT	3	-	114684778-114684827	3q36	Rattus norvegicus inositol 1,4,5-triphosphate receptor interacting protein-like 1 (Itpripl1), mRNA.					
Rattus norvegicus	RefSeq	GI_6981541-S	ILMN_284088	SLC16A1	NM_012716.1	NM_012716.1		25027	6981541	NM_012716.1	Slc16a1	NP_036848.1	ILMN_1355191	0006450129	S	2945	CCCACCTCCCGCCACACACACCAGACTTACAGGGGAACTTCTATCATGCT	2	+	199880303-199880352	2q34	Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 1 (Slc16a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the movement of a monocarboxylate, any compound containing a single carboxyl group (COOH or COO-), by uniport, symport or antiport across a membrane by a carrier-mediated mechanism [goid 15355] [evidence IEA]	RNMCT1; MCT1; RATMCT1	RNMCT1; MCT1; RATMCT1
Rattus norvegicus	RefSeq	GI_62651961-S	ILMN_270957	LOC691669	XM_001079209.1	XM_001079209.1		691669	109480364	XM_001079209.1	LOC691669	XP_001079209.1	ILMN_1352506	0006350037	S	473	TGGCATTCTATTGTGTTCTTGGATACTTAGGATCTCTGGCCCTAGTGAGC	7	-	18174909-18174958	7q13	PREDICTED: Rattus norvegicus similar to vomeronasal 2, receptor, 2 (LOC691669), mRNA.					
Rattus norvegicus	RefSeq	GI_57164064-S	ILMN_278389	V1RC41	NM_001009515.1	NM_001009515.1		494235	57164064	NM_001009515.1	V1rc41	NP_001009515.1	ILMN_1372792	0006900484	S	633	TCTACATAGCATCAGCCACTTGAGAGCATCCCCTGAAGAAAGAGCCACCC	4	+	86802627-86802676	4q24	Rattus norvegicus vomeronasal 1 receptor, C41 (V1rc41), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653673-S	ILMN_64899	EXPH5_PREDICTED	XM_236272.4	XM_236272.4		315663	109483490	XM_236272.4	Exph5_predicted	XP_236272.4	ILMN_1370691	0000670372	S	5447	CACGAGGTCCCAAGTCCACCTCATCCATTTCCAGGCCGATTGACTATGGA	8	+	56835158-56835207	8q24	PREDICTED: Rattus norvegicus exophilin 5 (predicted) (Exph5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929097-S	ILMN_281404	NEFL	NM_031783.1	NM_031783.1		83613	13929097	NM_031783.1	Nefl	NP_113971.1	ILMN_1361065	0003870538	S	1883	GTTTGCTTGCAGAGTGGCTTTCTGGCTTGCTGCCAACCTGTGCATGGTCC	15	+	47640033-47640082	15p12	Rattus norvegicus neurofilament, light polypeptide (Nefl), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence NAS]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence IEA]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence ISS]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway [goid 33596] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons [goid 8089] [evidence ISS]; The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons [goid 8090] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; The regrowth of axons outside the central nervous system (outside the brain and spinal cord) following an axonal injury [goid 14012] [evidence IEA]; The regrowth of axons outside the central nervous system (outside the brain and spinal cord) following an axonal injury [goid 14012] [evidence ISS]; The directed movement of mitochondria along microtubules in nerve cell axons [goid 19896] [evidence ISS]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence IEA]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence ISS]; The assembly of neurofilaments into bundles, in which the filaments are longitudinally oriented, with numerous crossbridges between them. Neurofilament bundles may be cross-linked to each other, to membrane-bounded organelles or other cytoskeletal structures such as microtubules [goid 33693] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; The formation of the bundles of intermediate filaments, known as tonofilaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs [goid 45110] [evidence IEA]; The formation of the bundles of intermediate filaments, known as tonofilaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs [goid 45110] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IEA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid [goid 43274] [evidence IPI]	NF-L; Nfl	NF-L; Nfl
Rattus norvegicus	RefSeq	GI_62644927-S	ILMN_56104	RGD1305081_PREDICTED	XM_342410.3	XM_342410.3		362107	109468013	XM_342410.3	RGD1305081_predicted	XP_342411.3	ILMN_1361213	0006550725	S	467	CCCACCTCCAGAAAGAGACATTGCCAGCCTGCCTTGAAGACCCACCCAGA	3	+	11075554-11075590:11075591-11075603	3p11	PREDICTED: Rattus norvegicus similar to ionized calcium binding adapter molecule 2 (Iba2) (predicted) (RGD1305081_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649355-S	ILMN_70378	LOC502972	XM_578478.1	XM_578478.1		502972	62649355	XM_578478.1	LOC502972	XP_578478.1	ILMN_1361571	0003450309	S	915	AGCTGGAGCATAGGCACAGGCGACCCAAAGGCAGCCATAAATGCCCTCTG				5q33	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC502972), mRNA.					
Rattus norvegicus	RefSeq	GI_62655357-S	ILMN_65168	RGD1560168_PREDICTED	XM_346069.3	XM_346069.3		367307	109486313	XM_346069.3	RGD1560168_predicted	XP_346070.2	ILMN_1357618	0002340452	S	2794	CCCTGGGTCTGGAGAAGGAGTCTGATGAGGAGCCTGAGGACTGAATGCTA	9	+	85856205-85856248:85856249-85856254	9q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930429A22 (predicted) (RGD1560168_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718004-S	ILMN_60336	LOC501276	XM_576691.1	XM_576691.1		501276	62718004	XM_576691.1	LOC501276	XP_576691.1	ILMN_1371112	0003870373	S	156	CAGAACCTAGACGCTGGGAGAGAAACATCAACCCCTGGCACTGAACTAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501276), mRNA.					
Rattus norvegicus	RefSeq	GI_62078740-S	ILMN_273498	F12	NM_001014006.1	NM_001014006.1		306761	62078740	NM_001014006.1	F12	NP_001014028.1	ILMN_1361887	0004070008	S	1858	ACTCCGGGGGTCCTCTGGTATGTGATGAAGGAGTTACAGAGCGTCAGCTC	17	+	15259341-15259390	17p14	Rattus norvegicus coagulation factor XII (Hageman factor) (F12), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 70009] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653959-S	ILMN_56127	DDX10_PREDICTED	XM_236263.4	XM_236263.4		300710	109483488	XM_236263.4	Ddx10_predicted	XP_236263.4	ILMN_1352932	0006840324	S	2740	GGCCTGTCTTTAGCAGAGGACGAAGAGCTGGTGTTACATCTCCTCAAAAG	8	-	56558087-56558136	8q24	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 (predicted) (Ddx10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649967-S	ILMN_56760	LOC298605	XM_238429.3	XM_238429.3		298605	62649967	XM_238429.3	LOC298605	XP_238429.3	ILMN_1368828	0000430131	S	1334	GGAATCAGACCCAGATTTCTTTCCCCAGCAATGTCCTCAGGTCTCCAGGG				5q36	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC37938 (LOC298605), mRNA.					
Rattus norvegicus	RefSeq	GI_47578082-S	ILMN_284283	OLR624	NM_001000650.1	NM_001000650.1		404847	47578082	NM_001000650.1	Olr624	NP_001000650.1	ILMN_1357308	0006370280	S	665	CCCTGAGAAACCACAGTGCAGAAGGAAGACGAAAGGCCTTGTCTACATGT	3	+	72201556-72201605	3q24	Rattus norvegicus olfactory receptor 624 (Olr624), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr624	Olr624
Rattus norvegicus	RefSeq	GI_56605739-S	ILMN_271548	WDFY1	NM_001008331.1	NM_001008331.1		301549	56605739	NM_001008331.1	Wdfy1	NP_001008332.1	ILMN_1354634	0003610541	S	1198	CACACTGATCCTGGAGCTGGATGGTACGTCTGCTACACGTTACGCACAGC	9	-	79010263-79010312	9q34	Rattus norvegicus WD repeat and FYVE domain containing 1 (Wdfy1), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC93914	MGC93914
Rattus norvegicus	RefSeq	Rn.8557	ILMN_271548	WDFY1	NM_001008331.1	NM_001008331.1		301549	56605739	NM_001008331.1	Wdfy1	NP_001008332.1	ILMN_1530375	0004200075	S	981	TTTGAGTTCCAGGTTCGAGTTTGTGATTCCTGTTATGACTCCATCAAAGA	9	-	79012628-79012673:79012674-79012677	9q34	Rattus norvegicus WD repeat and FYVE domain containing 1 (Wdfy1), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC93914	MGC93914
Rattus norvegicus	RefSeq	GI_22219457-S	ILMN_67199	OBP3	NM_147215.2	NM_147215.2		259247	77695920	NM_147215.2	Obp3	NP_671748.2	ILMN_1365227	0004920010	S	611	GCCTGAGCCTCCAGATTGCAGGGCAAGATCTATTTCTTCATCCTTTGTTC	5	-	78089221-78089257:78089970-78089982	5q24	Rattus norvegicus alpha-2u globulin PGCL4 (Obp3), transcript variant 1, mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence IDA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]	MGC108576	MGC108576
Rattus norvegicus	RefSeq	GI_9945325-S	ILMN_297176	ADAM3A	NM_020302.1	NM_020302.1		57021	9945325	NM_020302.1	Adam3a	NP_064698.1	ILMN_1367026	0003870195	S	2120	GCTGCCCTTAGATAAAAGCACACCGTTGGTTATCAAGCGGCCTGGCACTC	16	+	71772909-71772958	16q12.4	Rattus norvegicus ADAM metallopeptidase domain 3A (cyritestin 1) (Adam3a), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	tMDCI	tMDCI
Rattus norvegicus	RefSeq	GI_62652610-S	ILMN_285397	RGD1562627_PREDICTED	XM_345846.2	XM_345846.2		366949	62652610	XM_345846.2	RGD1562627_predicted	XP_345847.2	ILMN_1368153	0005220136	S	862	CACATTCTGGAGAGCGAGAAGTGCCAGCTCCAGAGCCAGGTGGAGCAGCT	7	-	113707217-113707266	7q34	PREDICTED: Rattus norvegicus similar to pancreatic beta-cell specific transcriptional activator (predicted) (RGD1562627_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647177-S	ILMN_273446	TAS2R135	NM_001025062.1	NM_001025062.1		502757	68163548	NM_001025062.1	Tas2r135	NP_001020233.1	ILMN_1352606	0002900168	S	702	GAAGACTCTCTTGGCCCTCTCAGAACTTCGGGATGTTTGGGCACAGGCCC	4	+	70175464-70175513	4q23	Rattus norvegicus taste receptor, type 2, member 135 (Tas2r135), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394220-S	ILMN_281484	RPS3A	NM_017153.1	NM_017153.1		29288	8394220	NM_017153.1	Rps3a	NP_058849.1	ILMN_1354829	0001940102	S	748	ACTGGTGATGAGACAGGTGCTAAGGTTGAACGAGCTGATGGCTATGAACC	2	-	178092416-178092465	2q34	Rattus norvegicus ribosomal protein S3a (Rps3a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665482	ILMN_50936	LOC502206	XM_577666.1	XM_577666.1		502206	62665482	XM_577666.1	LOC502206	XP_577666.1	ILMN_1650741	0006840053	S	2598	GGGCCGTCTTCCTGATTATAGCCCCAGAGTCTACCACCCTGTAAAGAGCT					PREDICTED: Rattus norvegicus similar to WW-domain oxidoreductase (LOC502206), mRNA.					
Rattus norvegicus	RefSeq	GI_62654057-S	ILMN_282145	UBE2CBP	NM_001039610.1	NM_001039610.1		315863	88853858	NM_001039610.1	Ube2cbp	NP_001034699.1	ILMN_1360263	0006770072	S	1071	TTGCCAGCTCCTGGGAAGGTGACATCAGTGTCCACCCTTTAACCCTGCCC	8	-	91594887-91594936	8q31	Rattus norvegicus ubiquitin-conjugating enzyme E2C binding protein (Ube2cbp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC124836	MGC124836
Rattus norvegicus	RefSeq	GI_62644575-S	ILMN_59976	LHX8	XM_575064.1	XM_575064.1		116473	62644575	XM_575064.1	Lhx8	XP_575064.1	ILMN_1370310	0005910315	S	317	TCAGATGTTTGTGTGTAAACTGGAGGGAAAGGACGTGCCGGAGCTGGCGG					PREDICTED: Rattus norvegicus LIM homeobox protein 8 (Lhx8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence IEA]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron that will reside in the forebrain [goid 21879] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron that will reside in the forebrain [goid 21879] [evidence ISS]; The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell [goid 21884] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642256-S	ILMN_55828	RGD1310408_PREDICTED	XM_220005.4	XM_220005.4		294054	109460111	XM_220005.4	RGD1310408_predicted	XP_220005.4	ILMN_1362807	0002510286	S	4874	AGATGATGGAATGGCGGCCTAAACACCCAACACGCTGGAATCGACAGTGC	1	+	245991019-245991068	1q54	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730509K17 gene (predicted) (RGD1310408_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656438	ILMN_291228	PEMT	XM_001078986.1	XM_001078986.1		25511	109488211	XM_001078986.1	Pemt	XP_001078986.1	ILMN_1651073	0006200270	S	111	CCTCAAGGAGTCCAGAGTGACCACATTTCCCTTCAGCGTGCTGGACAACC	10	-	46302821-46302870	10q22	PREDICTED: Rattus norvegicus phosphatidylethanolamine N-methyltransferase (Pemt), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways involving glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue [goid 6650] [evidence IMP]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus [goid 33273] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 50747] [evidence IMP]	Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidylethanolamine = S-adenosyl-L-homocysteine + phosphatidyl-N-methylethanolamine [goid 4608] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidylethanolamine = S-adenosyl-L-homocysteine + phosphatidyl-N-methylethanolamine [goid 4608] [evidence IEA]; Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule [goid 8170] [evidence IEA]; Interacting selectively with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine [goid 8429] [evidence IDA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644996-S	ILMN_59436	LOC497767	XM_579388.1	XM_579388.1		497767	62644996	XM_579388.1	LOC497767	XP_579388.1	ILMN_1355030	0004120736	S	2693	GTTGGAAGCCACCACAGTCCTATCCCCAAGCAGGTCTTTGCTCGTGGCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC081816; NM_017043 (LOC497767), mRNA.					
Rattus norvegicus	RefSeq	GI_31377502-S	ILMN_294477	KCNA1	NM_173095.2	NM_173095.2		24520	31377502	NM_173095.2	Kcna1	NP_775118.1	ILMN_1351365	0001450136	S	3759	CGACCAGAAGCCAAGAGAAATGTTTTTGGGAATGTGGAAGGCCACTCCGG	4	-	163009925-163009974	4q42	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 1 (Kcna1), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IMP]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA];  [goid 5251] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv1.1; Kcpvd; Kcna	Kv1.1; Kcpvd; Kcna
Rattus norvegicus	RefSeq	GI_62658544-S	ILMN_274320	RGD1311980	XM_001074613.1	XM_001074613.1		304334	109496679	XM_001074613.1	RGD1311980	XP_001074613.1	ILMN_1374500	0001240685	S	2351	TGCAGGCTGTGCGAGACTGTGTGGAGAAGGATGGTGTGAGCAGTGTGGTG				12q11	PREDICTED: Rattus norvegicus similar to cDNA sequence BC004044 (RGD1311980), mRNA.					
Rattus norvegicus	RefSeq	GI_62663098-S	ILMN_279268	MTRR	NM_001039003.1	NM_001039003.1		290947	84781675	NM_001039003.1	Mtrr	NP_001034092.1	ILMN_1371038	0001340025	S	1354	GGAGGCCCCAGCAAAGTATGTGCAAGACAACCTCCAGCATCACAGCCAGC	17	+	5115239-5115288	17p14	Rattus norvegicus 5-methyltetrahydrofolate-homocysteine methyltransferase reductase (Mtrr), mRNA.			Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112912	MGC112912
Rattus norvegicus	RefSeq	GI_62667268-S	ILMN_53174	LOC317403	XM_228818.2	XM_228818.2		317403	62667268	XM_228818.2	LOC317403	XP_228818.1	ILMN_1357389	0003140377	S	1605	CGGGAGGCAAAAGAGTTTGACCAGAAACTCCAAGACTTAACAGACCACAG					PREDICTED: Rattus norvegicus hypothetical LOC317403 (LOC317403), mRNA.					
Rattus norvegicus	RefSeq	GI_62645651-S	ILMN_69065	TTBK1_PREDICTED	XM_230495.4	XM_230495.4		311349	109468705	XM_230495.4	Ttbk1_predicted	XP_230495.4	ILMN_1363629	0002340369	S	4359	AGGGCAGGTAGGAAGCACATCAAGAGCCTTTGCATAGGAAGCTTCGGTCC	3	-	107517523-107517572	3q35	PREDICTED: Rattus norvegicus tau tubulin kinase 1 (predicted) (Ttbk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649336-S	ILMN_69421	THEA_PREDICTED	XM_233269.3	XM_233269.3		298302	62649336	XM_233269.3	Thea_predicted	XP_233269.3	ILMN_1364488	0000870309	S	2156	GACCACCAATGTGGCTGGCCTGTCCTCGGAGTTCTACAACACTTTCAAGG					PREDICTED: Rattus norvegicus thioesterase, adipose associated (predicted) (Thea_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657860-S	ILMN_58141	LOC498077	XM_573279.1	XM_573279.1		498077	62657860	XM_573279.1	LOC498077	XP_573279.1	ILMN_1355404	0003440133	S	889	CATTCTCACCAAGTGAATAAGAACATGGAGAACTGGGTGGCGGTACAGGG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498077), mRNA.					
Rattus norvegicus	RefSeq	GI_47577456-S	ILMN_274758	OLR470	NM_001000300.1	NM_001000300.1		295741	47577456	NM_001000300.1	Olr470	NP_001000300.1	ILMN_1365559	0007050280	S	694	GAGGGAAGGCACAAGGCATTCTCTACCTGTGGTTCCCACATGATGGCTGT	3	+	69188252-69188301	3q24	Rattus norvegicus olfactory receptor 470 (Olr470), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr470	Olr470
Rattus norvegicus	RefSeq	GI_47576498-S	ILMN_291384	OLR1617	NM_001000839.1	NM_001000839.1		405128	47576498	NM_001000839.1	Olr1617	NP_001000839.1	ILMN_1367298	0005860273	S	638	TTCCGTTTCTCTTCATCATGGGAACTTATATATTGGTCCTGAGAGCTGTA	15	+	26175377-26175426	15p14	Rattus norvegicus olfactory receptor 1617 (Olr1617), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1617	Olr1617
Rattus norvegicus	RefSeq	GI_21902530-S	ILMN_280501	STX17	NM_145723.1	NM_145723.1		252853	21902530	NM_145723.1	Stx17	NP_663775.1	ILMN_1348980	0006620037	S	1534	CTTCACTGTGGCACGGGTGTTTTCCTGGTCTTTCCTGTCTCCAGGTGAGG	5	+	64854254-64854303	5q22	Rattus norvegicus syntaxin 17 (Stx17), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27709115-S	ILMN_59408	LOC302724	XM_229001.1	XM_229001.1		302724	27709115	XM_229001.1	LOC302724	XP_229001.1	ILMN_1366287	0001940092	S	839	CCTGCTCCCTACAGATCTCAGGTTATGCAGAAGGCTTAGCAAAGTGAAGG					PREDICTED: Rattus norvegicus similar to family with sequence similarity 47, member A (LOC302724), mRNA.					
Rattus norvegicus	RefSeq	GI_29789368-S	ILMN_301911	PTPRG	NM_134356.1	NM_134356.1		171357	29789368	NM_134356.1	Ptprg	NP_599183.1	ILMN_1367742	0001580154	S	4134	GCTGTGTGCCCTTACCACCTTGTCCCAGCAGCTAGAGAATGAAAACGCTG	15	-	14449362-14449374:14449405-14449441	15p16-p15	Rattus norvegicus protein tyrosine phosphatase, receptor type, G (Ptprg), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence NAS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]	Ptpg	Ptpg
Rattus norvegicus	RefSeq	GI_62639035-S	ILMN_56922	LOC502301	XM_577765.1	XM_577765.1		502301	62639035	XM_577765.1	LOC502301	XP_577765.1	ILMN_1358055	0005700538	S	2055	TCCATGGGCCACCAAGGAAGTAGGCTGAGCAGACACTCTCATGTTACCTG				1q21	PREDICTED: Rattus norvegicus similar to Ca(2+)-sensing receptor (LOC502301), mRNA.					
Rattus norvegicus	RefSeq	GI_62645905-S	ILMN_58575	SMOX_PREDICTED	XM_218704.4	XM_218704.4		308652	109468856	XM_218704.4	Smox_predicted	XP_218704.3	ILMN_1365608	0001410692	S	2145	AATGGGATTCGCCTTCTGTAGTGGACACCGGGCTGACTTCCGACCTGGCT	3	+	119254188-119254237	3q36	PREDICTED: Rattus norvegicus spermine oxidase (predicted) (Smox_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657122-S	ILMN_279638	LOC681237	XM_001060874.1	XM_001060874.1		681237	109489043	XM_001060874.1	LOC681237	XP_001060874.1	ILMN_1356923	0004540035	S	301	AAATGCCCACCACCTACACAGCCACAGCAGCAGGCAAAGCCACAGGAGCA	10	-	90615024-90615073	10q32.1	PREDICTED: Rattus norvegicus hypothetical protein LOC681237 (LOC681237), mRNA.					
Rattus norvegicus	RefSeq	GI_62660407-S	ILMN_285038	TXK	NM_001024255.1	NM_001024255.1		305311	66730394	NM_001024255.1	Txk	NP_001019426.1	ILMN_1367012	0006420673	S	1733	GCGGAAACCTGGTGATCTAAAACGGAACACCAGCCCACAGGGTCATCTTG	14	+	37922527-37922541:37922542-37922576	14p11	Rattus norvegicus TXK tyrosine kinase (Txk), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58037555-S	ILMN_275362	SLC25A21	NM_133614.2	NM_133614.2		171151	58037555	NM_133614.2	Slc25a21	NP_598298.1	ILMN_1350758	0000060133	S	2286	GTTCTTGACTAACTAGCCCTGTGGGGTATTTCAACTAGGGGCAAGCTCAC				6q23	Rattus norvegicus solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (Slc25a21), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC105329; Odc1	MGC105329; Odc1
Rattus norvegicus	RefSeq	GI_62645146-A	ILMN_288898	RBMS1	NM_001012184.1	NM_001012184.1		362138	58865939	NM_001012184.1	Rbms1	NP_001012184.1	ILMN_1376410	0006840632	S	1562	GTTCCCGTTGAGGAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTC	3	-	42439613-42439651:42441178-42441188	3q21	Rattus norvegicus RNA binding motif, single stranded interacting protein 1 (Rbms1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25282416-S	ILMN_272661	IFI47	NM_172019.1	NM_172019.1		246208	25282416	NM_172019.1	Ifi47	NP_742016.1	ILMN_1366852	0006370040	S	1365	CTACTACACGCGCACACAGTTCCTTAACGTGGTGGTCGAAGATGCTAAAC	10	+	34204751-34204800	10q21	Rattus norvegicus interferon gamma inducible protein 47 (Ifi47), mRNA.		Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_6981695-S	ILMN_269372	UTRN	NM_013070.1	NM_013070.1		25600	6981695	NM_013070.1	Utrn	NP_037202.1	ILMN_1367387	0006200465	S	10422	GTCCCCAGCAGGCCACAGGCAATTTGAAGCATTTATCCAGCCAACCAACG	1	-	7100073-7100096:7100097-7100105:7103565-7103581	1p13	Rattus norvegicus utrophin (Utrn), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence ISS]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IDA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662357-S	ILMN_70406	LOC497704	XM_579521.1	XM_579521.1		497704	62662357	XM_579521.1	LOC497704	XP_579521.1	ILMN_1351630	0005390142	S	1379	CCACACTGGCTTCATGGCCCTCTCGGGAAAAGTGGCTGCTTACAGGTGTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031653 (LOC497704), mRNA.					
Rattus norvegicus	RefSeq	GI_62660916-S	ILMN_62167	LOC305567	XM_223671.3	XM_223671.3		305567	62660916	XM_223671.3	LOC305567	XP_223671.3	ILMN_1362139	0000110398	S	1814	ACGTGGTAATGCGGCAGTGAGTCTGGCGTGGGGTCAGCTACAGTGCTCAG				14q22	PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG23547 (LOC305567), mRNA.					
Rattus norvegicus	RefSeq	GI_61556862-S	ILMN_275518	BTBD9	NM_001013073.1	NM_001013073.1		294318	61556862	NM_001013073.1	Btbd9	NP_001013091.1	ILMN_1369176	0006370315	S	1741	GTGTTCCACTGTGTCCACTTCGAGTGTCCGGAGCAGCAGAGCACCCAGAA				20p12	Rattus norvegicus BTB (POZ) domain containing 9 (Btbd9), mRNA.		The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657585-S	ILMN_57405	HEMK2_PREDICTED	XM_213675.3	XM_213675.3		288309	109492778	XM_213675.3	Hemk2_predicted	XP_213675.1	ILMN_1368770	0002940450	S	613	GCAGGCAAGCAGGCCAAGAAACCCTGTCAGTCCTCAGGTTCAGCAAGTCC	11	+	27119239-27119288	11q11	PREDICTED: Rattus norvegicus HemK methyltransferase family member 2 (predicted) (Hemk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639388-S	ILMN_52772	UBLE1B_PREDICTED	XM_218502.3	XM_218502.3		308508	62639388	XM_218502.3	Uble1b_predicted	XP_218502.3	ILMN_1353608	0005360215	S	1334	CCCCGTGGATGACAAGGATGACAAGGCCAGCAAGTTAGCCAAGACAGACA				1q21	PREDICTED: Rattus norvegicus ubiquitin-like 1 (sentrin) activating enzyme E1B (predicted) (Uble1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663044-S	ILMN_69537	LOC364653	XM_344557.3	XM_344557.3		364653	109503646	XM_344557.3	LOC364653	XP_344558.3	ILMN_1358123	0000870113	S	1988	GGAACACCGATAACGCGATAGAACAAGCCTCTCCTCCACTACTGTGCGGG	16|NW_047481.1	-	11399-11440:11527-11534		PREDICTED: Rattus norvegicus similar to WD repeat domain 17 (LOC364653), mRNA.					
Rattus norvegicus	RefSeq	GI_27687348-S	ILMN_274781	PPID	NM_001004279.1	NM_001004279.1		361967	51948527	NM_001004279.1	Ppid	NP_001004279.1	ILMN_1354575	0004540494	S	1041	GGCTGATCTTAAGAAGGCGCAGGAGATAGCCCCAGGAGATAAAGCTATCC	2	+	171006922-171006922:171007004-171007046:171007686-171007691	2q32	Rattus norvegicus peptidylprolyl isomerase D (cyclophilin D) (Ppid), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IMP]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence IMP]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence TAS]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IDA]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IEA]	Cyp-40; MGC93768; CypD	Cyp-40; MGC93768; CypD
Rattus norvegicus	RefSeq	GI_51948527-S	ILMN_274781	PPID	NM_001004279.1	NM_001004279.1		361967	51948527	NM_001004279.1	Ppid	NP_001004279.1	ILMN_1361286	0004760603	S	966	GGACCCTTCAAACACTAAAGCACTATACCGAAAAGCACAAGGATGGCAAG	2	+	171006847-171006896	2q32	Rattus norvegicus peptidylprolyl isomerase D (cyclophilin D) (Ppid), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IMP]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence IMP]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence TAS]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IDA]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IEA]	Cyp-40; MGC93768; CypD	Cyp-40; MGC93768; CypD
Rattus norvegicus	RefSeq	GI_62644476-S	ILMN_55176	LOC365954	XM_575051.1	XM_575051.1		365954	62644476	XM_575051.1	LOC365954	XP_575051.1	ILMN_1374056	0006040750	S	685	CTGGCATGGCCTTCCATGTTCCTATCCCCAATCTCATTTCCTGGTATGAC				2q44	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC365954), mRNA.					
Rattus norvegicus	RefSeq	GI_62641296-S	ILMN_276457	RGD1306636_PREDICTED	XM_001078017.1	XM_001078017.1		293498	109462869	XM_001078017.1	RGD1306636_predicted	XP_001078017.1	ILMN_1351850	0003290131	S	1131	GTCTTCGCACCAGACCCTTGAAAGAAGCTGTTCCCTTCCAGCACCTGAGC				1q36	PREDICTED: Rattus norvegicus hypothetical LOC293498 (predicted) (RGD1306636_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648057-S	ILMN_50184	PLXND1_PREDICTED	XM_232283.4	XM_232283.4		312652	109472513	XM_232283.4	Plxnd1_predicted	XP_232283.4	ILMN_1365553	0006450176	S	6656	CCCCACGAAAGGAGGAAGGTGAAGGTGCGAGCTGTAGCTGGACTACTTGA	4	-	152080596-152080645	4q42	PREDICTED: Rattus norvegicus plexin D1 (predicted) (Plxnd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654336-S	ILMN_275066	TREX1	XM_001055797.1	XM_001055797.1		301014	109483973	XM_001055797.1	Trex1	XP_001055797.1	ILMN_1370137	0005670671	S	2428	TGCAGAGACAGATTTGGAAGACGCCGAGATGGACTGTAGCTGAGGGCCTG	8	-	114073400-114073407:114073408-114073449	8q32	PREDICTED: Rattus norvegicus three prime repair exonuclease 1 (Trex1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Interacting selectively with the mismatch repair complex MutLalpha [goid 32405] [evidence IEA]; Interacting selectively with the mismatch repair complex MutSalpha [goid 32407] [evidence IEA]; Interacting selectively with an adenyl deoxyribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety [goid 32558] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659506-S	ILMN_51180	LOC364004	XM_344149.2	XM_344149.2		364004	62659506	XM_344149.2	LOC364004	XP_344150.2	ILMN_1354574	0000070403	S	153	CAGGAAGCAGAGGTGAATGCTGGTGAACAGGAAGCAGAGGTGAATGCTGG					PREDICTED: Rattus norvegicus similar to circumsporozoite protein (LOC364004), mRNA.					
Rattus norvegicus	RefSeq	GI_62667453-A	ILMN_282959	RPL10	NM_031100.1	NM_031100.1		81764	13592052	NM_031100.1	Rpl10	NP_112362.1	ILMN_1376415	0006020563	S	103	GCCATACCCAAAGTCTCGTTTCTGTCGTGGTGTCCCTGATGCTAAGATCC	X	-	160337862-160337875:160337955-160337990	Xq37	Rattus norvegicus ribosomal protein L10 (Rpl10), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence NAS]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34876584-S	ILMN_270414	RGD1559604_PREDICTED	XM_001068266.1	XM_001068266.1		498790	109506117	XM_001068266.1	RGD1559604_predicted	XP_001068266.1	ILMN_1360278	0001450390	S	98	GGCACCAGTATACCCAACGAGGTTCCCAAGAGTAAGTCACTGGAGGCTGT				17q12.3	PREDICTED: Rattus norvegicus similar to protein RAKd (predicted) (RGD1559604_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663776-S	ILMN_270414	RGD1559604_PREDICTED	XM_001068266.1	XM_001068266.1		498790	109506117	XM_001068266.1	RGD1559604_predicted	XP_001068266.1	ILMN_1372695	0003360021	S	1111	CCTGGACGGCTCAGCAACTCACATTCAACTGAAGCTCCAGCTAATGGACT				17q12.3	PREDICTED: Rattus norvegicus similar to protein RAKd (predicted) (RGD1559604_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660522-S	ILMN_54351	LOC363320	XM_343660.3	XM_343660.3		363320	109512956	XM_343660.3	LOC363320	XP_343661.3	ILMN_1352441	0002970156	S	1127	GTAACTGCTTGTCTACTATGTCTCCAAGGCAAGCCACAGGCTATAAGCCA	Un|NW_047851.1	-	2452104-2452153		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC363320), mRNA.					
Rattus norvegicus	RefSeq	GI_62717896-S	ILMN_54351	LOC363320	XM_343660.3	XM_343660.3		363320	109512956	XM_343660.3	LOC363320	XP_343661.3	ILMN_1362659	0003290593	S	667	GACACAGACCAGGACAAGATCTCTCTTGGAGAGAAGATCTACAGGAGGAG	Un|NW_047851.1	-	2452564-2452613		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC363320), mRNA.					
Rattus norvegicus	RefSeq	GI_62639155-S	ILMN_272608	LOC499100	XM_001068636.1	XM_001068636.1		499100	109461394	XM_001068636.1	LOC499100	XP_001068636.1	ILMN_1351613	0003990020	S	1238	GGTGGAGGCTACCTCACTGGGACAAAGAGACGACAAACTGCAGGCACTAC				1q21	PREDICTED: Rattus norvegicus similar to doublesex and mab-3 related transcription factor 7 (LOC499100), mRNA.					
Rattus norvegicus	RefSeq	GI_18543362-S	ILMN_289560	FGF22	NM_130751.1	NM_130751.1		170579	18543362	NM_130751.1	Fgf22	NP_570107.1	ILMN_1362761	0003290332	S	321	GGAGCGCATCGAGGAGAACGGCTACAACACATACGCCTCACGACGTTGGA	7	-	11463417-11463466	7q11	Rattus norvegicus fibroblast growth factor 22 (Fgf22), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]	The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928995-S	ILMN_276515	ARL2	NM_031711.1	NM_031711.1		65142	13928995	NM_031711.1	Arl2	NP_113899.1	ILMN_1359568	0001170411	S	736	GCTGTCACCCATCTCCCAAAGTGGCCTGCAGCCGCCATGCCAAAAGGAAA	1	-	208909548-208909597	1q43	Rattus norvegicus ADP-ribosylation factor-like 2 (Arl2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of acetylcholine into, out of, within or between cells. Acetylcholine is an acetic acid ester of the organic base choline and functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 15870] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638369-S	ILMN_68867	MOXD1	XM_220095.4	XM_220095.4		294119	109457638	XM_220095.4	Moxd1	XP_220095.3	ILMN_1371903	0006020471	S	1847	TGGTGTGCGGGACATCAGCTTCCTCACGTCTGCATGGCGTTTTCCCTCTC	1	-	21601146-21601195	1p12	PREDICTED: Rattus norvegicus monooxygenase, DBH-like 1 (Moxd1), mRNA.		The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657118-S	ILMN_274620	RGD1566146_PREDICTED	XM_577126.1	XM_577126.1		501725	62657118	XM_577126.1	RGD1566146_predicted	XP_577126.1	ILMN_1370942	0006510039	S	339	CCCAGTGTGCTGTCAGACTACCTGCCGCCCTAGCTGTGGAGTGTCCAGCT	10	-	88788080-88788129	10q32.1	PREDICTED: Rattus norvegicus similar to keratin associated protein 4-10 (predicted) (RGD1566146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62543500-S	ILMN_282637	DDX47	NM_001015005.1	NM_001015005.1		297685	62543500	NM_001015005.1	Ddx47	NP_001015005.1	ILMN_1350598	0003360100	S	1465	TGCTCGGCCATCTGGGAGCTTGTTCTCTCTGAGGATCGGAGTGTCGTTGC	4	+	171940396-171940445	4q43	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105650	MGC105650
Rattus norvegicus	RefSeq	GI_9506878-I	ILMN_296013	MAF	NM_019318.1	NM_019318.1		54267	9506878	NM_019318.1	Maf	NP_062191.1	ILMN_1375563	0001580594	I	1649	CACCGCCTACCCCACACATACCCTGGACTTGCACAAGGGTCAAAGATCTG	19	-	45859756-45859805	19q12	Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) (Maf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]; The synthesis of RNA on a template of DNA [goid 6351] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence NAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of chondrocyte differentiation [goid 32330] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	cMaf; Maf2	cMaf; Maf2
Rattus norvegicus	RefSeq	GI_62654436-S	ILMN_56956	LOC503231	XM_578759.1	XM_578759.1		503231	62654436	XM_578759.1	LOC503231	XP_578759.1	ILMN_1374583	0001190132	S	73	AAGATGGCTGCCCCTTACAAAGATGGGTGCCCCCTACAAAGATGGCTGCC					PREDICTED: Rattus norvegicus similar to hypothetical protein PFL1490w (LOC503231), mRNA.					
Rattus norvegicus	RefSeq	GI_61889089-S	ILMN_69138	FAAH	NM_024132.3	NM_024132.3		29347	77695931	NM_024132.3	Faah	NP_077046.1	ILMN_1357566	0004670458	S	2347	GTTGTGGAGACAAGGTTTCTCTCAGTAGCCCTGGCTGTCCAGGACCTCAC	5	+	136328638-136328687	5q36	Rattus norvegicus fatty acid amide hydrolase (Faah), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IC ]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 9062] [evidence IDA]	Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3 [goid 4040] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IMP]; Interacting selectively with a lipid [goid 8289] [evidence IMP]; Interacting selectively with a lipid [goid 8289] [evidence IDA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IDA]; Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction [goid 16884] [evidence IEA];  [goid 17064] [evidence TAS];  [goid 17064] [evidence IMP];  [goid 17064] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62651352-S	ILMN_59291	LOC500737	XM_576116.1	XM_576116.1		500737	62651352	XM_576116.1	LOC500737	XP_576116.1	ILMN_1367439	0005080113	S	248	GGGAAGGGGCTGGAGTGGGTTGCATCCATTACTAATACTGGTGGTAGCAC				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V-III region VH26 precursor (LOC500737), mRNA.					
Rattus norvegicus	RefSeq	GI_62652281-S	ILMN_61525	LOC366910	XM_345831.2	XM_345831.2		366910	62652281	XM_345831.2	LOC366910	XP_345832.2	ILMN_1352562	0005690176	S	755	GGCCTTCCATGTTCCTACCCCCAGTCTGGCATTGCTCAACGACAACTTCG					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC366910), mRNA.					
Rattus norvegicus	RefSeq	GI_62658818-S	ILMN_285751	LOC363915	XR_009243.1	XR_009243.1		363915	109497284	XR_009243.1	LOC363915		ILMN_1367343	0006550164	S	3245	GAGCACACGACCATCATAGACCGAGGGCTGGGAGGCTTCGAGGAGAACAA				12q14	PREDICTED: Rattus norvegicus similar to CG14446-PA (LOC363915), mRNA.					
Rattus norvegicus	RefSeq	GI_47577186-S	ILMN_285878	OLR744	NM_001000577.1	NM_001000577.1		366122	47577186	NM_001000577.1	Olr744	NP_001000577.1	ILMN_1366682	0001940471	S	95	ACCTGGCTACAGTGTTGGGCAATGGCCTCATTGTTGTGACAATTAGTGTC	3	-	74724139-74724188	3q24	Rattus norvegicus olfactory receptor 744 (Olr744), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr744	Olr744
Rattus norvegicus	RefSeq	GI_62653754-S	ILMN_268328	RGD1559463_PREDICTED	XM_001074725.1	XM_001074725.1		300748	109484804	XM_001074725.1	RGD1559463_predicted	XP_001074725.1	ILMN_1352715	0003440112	S	1806	CAGGCTGGGTGGGGAGGGCATGGGATAGAACAGTTTGCTTTTCCTGTGGG				8q24	PREDICTED: Rattus norvegicus similar to Stomatin-like 1 (predicted) (RGD1559463_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656259-S	ILMN_301178	MYH13	XM_001078857.1	XM_001078857.1		29605	109491030	XM_001078857.1	Myh13	XP_001078857.1	ILMN_1360194	0002900164	S	5846	CTCGTTGCCATGGGCCACCTCCAGGAGAGCAGAGGGAGACTGGGAAAAAT				10q24	PREDICTED: Rattus norvegicus myosin, heavy polypeptide 13, skeletal muscle (Myh13), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652466	ILMN_47832	TRMT12	XM_235337.3	XM_235337.3		314999	109480805	XM_235337.3	Trmt12	XP_235337.3	ILMN_1651128	0000050341	S	1300	GAGGACACGAATCCTACATGTCCACCCAGTGAAATCTTACGCCCCCCACG	7	+	95629590-95629639	7q33	PREDICTED: Rattus norvegicus tRNA methyltranferase 12 homolog (S. cerevisiae) (Trmt12), mRNA.		The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090643-S	ILMN_269028	ABHD6	NM_001007680.1	NM_001007680.1		305795	56090643	NM_001007680.1	Abhd6	NP_001007681.1	ILMN_1364746	0001580019	S	1892	CCACAGGGAAGAGCGCCTGACCGGGTGGGTTCCCTAGGAGTGATTTACAA	15	-	18846772-18846821	15p14	Rattus norvegicus abhydrolase domain containing 6 (Abhd6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94917	MGC94917
Rattus norvegicus	RefSeq	GI_18266699-S	ILMN_276795	HNRPH1	NM_080896.1	NM_080896.1		140931	18266699	NM_080896.1	Hnrph1	NP_543172.1	ILMN_1370138	0003450528	S	1257	GAATGGGAGGGATGTCTAGCATGTCTAGTATGAGTGGTGGATGGGGAATG	10	+	35929457-35929506	10q22	Rattus norvegicus heterogeneous nuclear ribonucleoprotein H1 (Hnrph1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]	Hnrph; MGC124573; Hnrnph1	Hnrph; MGC124573; Hnrnph1
Rattus norvegicus	RefSeq	GI_62659462-S	ILMN_287835	PRG4_PREDICTED	XM_001070215.1	XM_001070215.1		289104	109498799	XM_001070215.1	Prg4_predicted	XP_001070215.1	ILMN_1360637	0001170133	S	3393	TGTGCCTACTAGAACAGCAAGAGCAATCACCACGCGCTCAGGGCAGACCC				13q21	PREDICTED: Rattus norvegicus proteoglycan 4, (megakaryocyte stimulating factor, articular superficial zone protein, camptodactyly, arthropathy, coxa vara, pericarditis syndrome) (predicted) (Prg4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644029-S	ILMN_272940	HIST2H4_PREDICTED	XM_001062199.1	XM_001062199.1		295277	109467220	XM_001062199.1	Hist2h4_predicted	XP_001062199.1	ILMN_1354052	0000430093	S	1	ATGTCTGGCAGAGGAAAGGGTGGTAAGGGCTTAGGCAAGGGTGGCGCCAA				2q34	PREDICTED: Rattus norvegicus histone 2, H4 (predicted) (Hist2h4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34576548-S	ILMN_300200	RTKN	NM_184046.1	NM_184046.1		297383	34576548	NM_184046.1	Rtkn	NP_908935.1	ILMN_1366266	0000940215	S	2497	CTGCACTGGAGAGCGGAGAGGAAAGCACCTCCCTTGTGACCCCTACATCA	4	+	117363894-117363943	4q34	Rattus norvegicus rhotekin (Rtkn), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; Any process that modulates the frequency, rate or extent of anti-apoptosis [goid 45767] [evidence ISS]; Any process that modulates the frequency, rate or extent of anti-apoptosis [goid 45767] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that modulates the frequency, rate or extent of anti-apoptosis [goid 45767] [evidence ISS]	Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of GTP to GDP and orthophosphate [goid 5095] [evidence ISS]; Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of GTP to GDP and orthophosphate [goid 5095] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence ISS]; Interacting selectively with the GTP-bound form of the Rho protein [goid 17049] [evidence ISS]; Interacting selectively with the GTP-bound form of the Rho protein [goid 17049] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of GTP to GDP and orthophosphate [goid 5095] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with the GTP-bound form of the Rho protein [goid 17049] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576924-S	ILMN_262667	OLR241	NM_001000734.1	NM_001000734.1		404992	47576924	NM_001000734.1	Olr241	NP_001000734.1	ILMN_1364717	0002630452	S	852	GCTGAATCCCCTCATCTATAGCCTGAGAAACAGAGATGTAAAGGAGGCCC	1	+	165320566-165320615	1q33	Rattus norvegicus olfactory receptor 241 (Olr241), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr241	Olr241
Rattus norvegicus	RefSeq	GI_62652464-S	ILMN_47744	LOC500875	XM_576274.1	XM_576274.1		500875	62652464	XM_576274.1	LOC500875	XP_576274.1	ILMN_1352590	0001740168	S	96	GAGAGAGACAGTCTTTTGAGGCTTCTGCCCACTGCCATGGATGAGCCATC				7q33	PREDICTED: Rattus norvegicus similar to STELLA (LOC500875), mRNA.					
Rattus norvegicus	RefSeq	GI_62656924-S	ILMN_55296	CCDC49_PREDICTED	XM_340890.3	XM_340890.3		360613	109488914	XM_340890.3	Ccdc49_predicted	XP_340891.3	ILMN_1365917	0006110019	S	1028	CAGGAAGGAGAGAGACAGCCCGTCACCTAAAAAGGAGGTCTACCAGCGGC	10	-	86496501-86496550	10q31	PREDICTED: Rattus norvegicus coiled-coil domain containing 49 (predicted) (Ccdc49_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27662981-S	ILMN_276204	RGD1306782_PREDICTED	XM_001077385.1	XM_001077385.1		300091	109482621	XM_001077385.1	RGD1306782_predicted	XP_001077385.1	ILMN_1371193	0002570601	S	112	TCCGCTGCGGCCAGTAAGAAGCGGCGGGAAGAACCGACCATACAGTGGAT				7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700029P11 (predicted) (RGD1306782_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578028-S	ILMN_276846	OLR1065	NM_001000498.1	NM_001000498.1		304633	47578028	NM_001000498.1	Olr1065	NP_001000498.1	ILMN_1361891	0003710128	S	113	TGGGGAACTCAGCCATCATTCTGTTGACTCTGCTGGATTACCGCCTCCAA	7	+	8120065-8120114	7q11	Rattus norvegicus olfactory receptor 1065 (Olr1065), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1065; ratchr7-8119953-8120891_ORF	Olr1065; ratchr7-8119953-8120891_ORF
Rattus norvegicus	RefSeq	GI_42476305-S	ILMN_270737	TCEB2	NM_031129.2	NM_031129.2		81807	42476305	NM_031129.2	Tceb2	NP_112391.1	ILMN_1349239	0002030279	S	17	GCGCGTCGAGCCAGAAGCAGCCGCCGGGATGGACGTGTTTCTCATGATCC	10	-	13089452-13089471:13089577-13089579:13089580-13089606	10q12	Rattus norvegicus transcription elongation factor B (SIII), polypeptide 2 (Tceb2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1 [goid 30891] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any function that supports basal (unregulated) transcription of genes by core RNA polymerase II. Five general transcription factors are necessary and sufficient for such basal transcription in yeast: TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBF) [goid 16251] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62648624-S	ILMN_55541	PLEKHF2_PREDICTED	XM_342803.3	XM_342803.3		362484	109474651	XM_342803.3	Plekhf2_predicted	XP_342804.2	ILMN_1373010	0000870053	S	3022	TGCAGGAAATGAGGAAAGCACAGTAGAGCATGGCCTGGGGGCTCCGTTCC	5	-	24835918-24835967	5q13	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family F (with FYVE domain) member 2 (predicted) (Plekhf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654876-S	ILMN_56865	LOC503245	XM_578776.1	XM_578776.1		503245	62654876	XM_578776.1	LOC503245	XP_578776.1	ILMN_1357403	0003360441	S	632	TGCTGATGTCCCATGCCACAAACAGGGCTTTGAAGTGGTCCAGGATTCCC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC503245), mRNA.					
Rattus norvegicus	RefSeq	GI_62663318-S	ILMN_58703	SUSD3_PREDICTED	XM_225203.3	XM_225203.3		306810	62663318	XM_225203.3	Susd3_predicted	XP_225203.2	ILMN_1373197	0003170279	S	1792	CAGGGCCGTCCTCAACCACACAGTAAGTTCAATGCTGCCCCAGGCTATGG				17p14	PREDICTED: Rattus norvegicus sushi domain containing 3 (predicted) (Susd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577464-S	ILMN_289252	OLR689	NM_001000997.1	NM_001000997.1		405357	47577464	NM_001000997.1	Olr689	NP_001000997.1	ILMN_1352144	0005290131	S	674	GAGCTCACAGTTCTGAAGGCAGACGTAAAGCTCTCTCTACCTGTGGTTCC	3	-	73569765-73569814	3q24	Rattus norvegicus olfactory receptor 689 (Olr689), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr689	Olr689
Rattus norvegicus	RefSeq	GI_47059109-S	ILMN_285900	DOM3Z	NM_212497.1	NM_212497.1		361799	47059109	NM_212497.1	Dom3z	NP_997662.1	ILMN_1349647	0003290471	S	982	CTTCTACAGGCACAAGCTGCTGAAATGGTGGGCTCAGTCGTTCCTCCCGG	20	-	4094296-4094337:4094448-4094455	20p12	Rattus norvegicus DOM-3 homolog Z (C. elegans) (Dom3z), mRNA.			Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	MGC95256	MGC95256
Rattus norvegicus	RefSeq	GI_9506900-S	ILMN_285970	MPDZ	NM_019196.1	NM_019196.1		29365	9506900	NM_019196.1	Mpdz	NP_062069.1	ILMN_1372573	0000840338	S	7025	CCACGTAGTCATGGAAGACAGAGAAGAAGCCCAGAACCTTCTAATGCTGA	5	-	100009409-100009458	5q31	Rattus norvegicus multiple PDZ domain protein (Mpdz), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646685-S	ILMN_277477	LOC311984	XM_001062783.1	XM_001062783.1		311984	109472970	XM_001062783.1	LOC311984	XP_001062783.1	ILMN_1370088	0004540195	S	3432	ACTGTCCTGGCCTATAGAATTTCCCGTTTGCTCCAAATGGTCAGCCAGGC				4q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A530088I07 gene (LOC311984), mRNA.					
Rattus norvegicus	RefSeq	GI_62653011-S	ILMN_52378	LOC500926	XM_576335.1	XM_576335.1		500926	62653011	XM_576335.1	LOC500926	XP_576335.1	ILMN_1351762	0006290500	S	1139	CGCCATGGGGAGGGCTTTTGGGAGAGGCAGACTGGCTTAGGCAGCATCTG				7q36	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr287 (LOC500926), mRNA.					
Rattus norvegicus	RefSeq	GI_62654104-S	ILMN_63554	LOC300864	XM_236440.3	XM_236440.3		300864	62654104	XM_236440.3	LOC300864	XP_236440.3	ILMN_1368880	0000610279	S	74	AGGAAGAGGACCTGGTGCAGACCTTGTAGGAAGAGGACCTGGTGCAGACC					PREDICTED: Rattus norvegicus similar to circumsporozoite protein - Plasmodium vivax (isolate VK247)  (fragment) (LOC300864), mRNA.					
Rattus norvegicus	RefSeq	GI_62653314-S	ILMN_69430	TYK2_PREDICTED	XM_233741.2	XM_233741.2		298706	62653314	XM_233741.2	Tyk2_predicted	XP_233741.1	ILMN_1349863	0004480136	S	3283	CTAGCCAGAGTCCCCCCACGAAATTCATCGAGCTCATCGGCGTAACCCAG					PREDICTED: Rattus norvegicus tyrosine kinase 2 (predicted) (Tyk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651886-S	ILMN_64630	NUAK1	XM_234998.4	XM_234998.4		299694	109480400	XM_234998.4	Nuak1	XP_234998.3	ILMN_1349303	0002340739	S	2165	CCGGCTGGCAGACAGTAGCTTCTCCCTTCTTGCTGATATGGACGACGTGA	7	+	21528247-21528296	7q13	PREDICTED: Rattus norvegicus NUAK family, SNF1-like kinase, 1 (Nuak1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758687-S	ILMN_273309	KCNJ9	NM_053834.1	NM_053834.1		116560	16758687	NM_053834.1	Kcnj9	NP_446286.1	ILMN_1359445	0004050093	S	2064	ATCCTCAGGTTACAGGCAAACAAGCGGTGGAGGTAAACCCGGAGCAGGGG				13q24	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 9 (Kcnj9), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA];  [goid 15467] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Girk3; Kir3.3	Girk3; Kir3.3
Rattus norvegicus	RefSeq	GI_62649546-S	ILMN_294697	RGD1564804_PREDICTED	XM_001069921.1	XM_001069921.1		313551	109477065	XM_001069921.1	RGD1564804_predicted	XP_001069921.1	ILMN_1359493	0007000369	S	1318	TGGAGACTAAAGCAGCGGCCCGGCAGGCCACGTTTGGGGAGTCATCCTAA				5q36	PREDICTED: Rattus norvegicus similar to chromosome 1 open reading frame 50 (predicted) (RGD1564804_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59891434	ILMN_299379	CCL9	NM_001012357.1	NM_001012357.1		360579	59891434	NM_001012357.1	Ccl9	NP_001012357.1	ILMN_1348926	0003990524	S	417	TAAAAGATTGGAGCAAAACTCACAACCACAGATCTACAAACAATAACATT	10	-	71646753-71646757:71646758-71646802	10q26	Rattus norvegicus chemokine (C-C motif) ligand 9 (Ccl9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	MGC108969	MGC108969
Rattus norvegicus	RefSeq	GI_62662682-S	ILMN_276412	LOC266761	XM_001064152.1	XM_001064152.1		266761	109503397	XM_001064152.1	Loc266761	XP_001064152.1	ILMN_1353124	0004480278	S	1519	CATCGAGACCCTAGATACTTCCCAGACCCTGAGGAATTCCAGCCAGAGCG	16	+	50230682-50230731	16q11	PREDICTED: Rattus norvegicus cytochrome P450-like protein (Loc266761), mRNA.					
Rattus norvegicus	RefSeq	GI_62659685-S	ILMN_264643	MGST3_PREDICTED	XM_001076104.1	XM_001076104.1		289197	109498992	XM_001076104.1	Mgst3_predicted	XP_001076104.1	ILMN_1351313	0006420131	S	141	ACAGCTAGAGCCGCACCCAGGCATTGCTGCACGGCTCAGGTCTGCACCAG				13q24	PREDICTED: Rattus norvegicus microsomal glutathione S-transferase 3 (predicted) (Mgst3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576232-S	ILMN_276860	OLR1320	NM_001000471.1	NM_001000471.1		300621	47576232	NM_001000471.1	Olr1320	NP_001000471.1	ILMN_1354955	0002510373	S	380	GTAACCCCTTGCTCTACAATGTCACCATGTCTTACCAAGTCTGTGCACGG	8	+	42714170-42714219	8q22	Rattus norvegicus olfactory receptor 1320 (Olr1320), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1320	Olr1320
Rattus norvegicus	RefSeq	GI_62653513-S	ILMN_56767	LOC367059	XM_345920.2	XM_345920.2		367059	62653513	XM_345920.2	LOC367059	XP_345921.2	ILMN_1367110	0002260068	S	0	ATGACAACAGAGTGTGCATGGCCTGACTGCTGCCCCAGGCTTTTCAATGC				8q21	PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC367059), mRNA.					
Rattus norvegicus	RefSeq	GI_62647887-S	ILMN_65236	LOC500274	XM_575624.1	XM_575624.1		500274	62647887	XM_575624.1	LOC500274	XP_575624.1	ILMN_1361871	0004590592	S	780	GCCCTGTATTTAGCAAGAGGTCACGATTGGGATTCAAGGCAACAACTGGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500274), mRNA.					
Rattus norvegicus	RefSeq	GI_31542918-S	ILMN_262554	GRIN2C	NM_012575.2	NM_012575.2		24411	31542918	NM_012575.2	Grin2c	NP_036707.2	ILMN_1358782	0005700014	S	4324	TTGGCCAGGTTTGGGGGACAGGCCAGCTTGGGCTCCTCTGGCTTCTATTT	10	-	105323546-105323595	10q32.2	Rattus norvegicus glutamate receptor, ionotropic, NMDA2C (Grin2c), mRNA.	The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another along an axis [goid 33058] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another along an axis [goid 33058] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence IEA];  [goid 4972] [evidence ISS];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]	NR2C	NR2C
Rattus norvegicus	RefSeq	GI_62638610-S	ILMN_58192	LOC502240	XM_217965.3	XM_217965.3		502240	62638610	XM_217965.3	LOC502240	XP_217965.3	ILMN_1351555	0005570563	S	1976	TGATGGCTGCACAGCCCAGGCACAGCAGGTGGGTCCCATTGCAGCCCCAT				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502240), mRNA.					
Rattus norvegicus	RefSeq	GI_62662260-S	ILMN_58784	LOC498592	XM_573868.1	XM_573868.1		498592	62662260	XM_573868.1	LOC498592	XP_573868.1	ILMN_1373932	0003520025	S	608	GCGGAAAAAGGCTCTGCTGGATCCCTACTGACACACATGAGGATAGCTGC				1q21	PREDICTED: Rattus norvegicus similar to LRRGT00149 (LOC498592), mRNA.					
Rattus norvegicus	RefSeq	GI_51854224-S	ILMN_279289	EGLN2	NM_001004083.1	NM_001004083.1		308457	51854224	NM_001004083.1	Egln2	NP_001004083.1	ILMN_1367614	0005900687	S	1719	CTGCCATGTCTGGTCCATTGCGTGTTGAGCTGAGGGGAGGCAGGATTTGG	1	-	82233429-82233478	1q21	Rattus norvegicus EGL nine homolog 2 (C. elegans) (Egln2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 45732] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 45732] [evidence ISS]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence ISS]; Interacting selectively with and responding, e.g. by conformational change, to changes in the cellular level of oxygen (O2) [goid 19826] [evidence ISS]	MGC93666; MGC93662; PHD-1	MGC93666; MGC93662; PHD-1
Rattus norvegicus	RefSeq	GI_62665192-S	ILMN_59404	NFATC3_PREDICTED	XM_341680.2	XM_341680.2		361400	62665192	XM_341680.2	Nfatc3_predicted	XP_341681.2	ILMN_1353054	0004050451	S	3511	GCAGGCTCTCTCTCAGAGGTGCTGCTCTTGCAGGTGACCTGGTTGCATAG				19q12	PREDICTED: Rattus norvegicus nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 (predicted) (Nfatc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649397-S	ILMN_279284	ZCCHC11_PREDICTED	XM_001060223.1	XM_001060223.1		313481	109476882	XM_001060223.1	Zcchc11_predicted	XP_001060223.1	ILMN_1367956	0004780133	S	4956	GCCCACAGCAACCAGCCAATCCTGATGTCTCAAGGGTATCCGTACCTCAG				5q35	PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 11 (predicted), transcript variant 1 (Zcchc11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079142-S	ILMN_290253	YIPF2	NM_001014208.1	NM_001014208.1		363027	62079142	NM_001014208.1	Yipf2	NP_001014230.1	ILMN_1359949	0000050601	S	1051	GGCCCACAGGCCAAACTCAATGGGGAGACTACTGCCCTCCGATGAAGATT	8	-	20695195-20695236:20695315-20695322	8q13	Rattus norvegicus Yip1 domain family, member 2 (Yipf2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]			RGD1307512	RGD1307512
Rattus norvegicus	RefSeq	GI_16758569-S	ILMN_263394	CDC37	NM_053743.1	NM_053743.1		114562	16758569	NM_053743.1	Cdc37	NP_446195.1	ILMN_1375218	0004670026	S	1500	CTGGGCAGGGTCTGTCCCTATGGGTCTATGGTCACTGTTTCTCTTCTGTC	8	-	20164204-20164253	8q13	Rattus norvegicus cell division cycle 37 homolog (S. cerevisiae) (Cdc37), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEP]	Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650324-S	ILMN_53928	LOC366550	XM_345634.2	XM_345634.2		366550	62650324	XM_345634.2	LOC366550	XP_345635.2	ILMN_1363821	0006130519	S	1077	GCAGCAGGGAATGTCAGAGAGTGTAATCCACGGGATGAGAACCGCCATGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110018J12 (LOC366550), mRNA.					
Rattus norvegicus	RefSeq	GI_62667082-S	ILMN_65549	LOC501594	XM_580217.1	XM_580217.1		501594	62667082	XM_580217.1	LOC501594	XP_580217.1	ILMN_1370116	0004810113	S	2010	ACACCCTTCTCCGGTATCTGATCCAGCAAACTCTTGGTTGGGAAGCCCTG					PREDICTED: Rattus norvegicus LOC501594 (LOC501594), mRNA.					
Rattus norvegicus	RefSeq	GI_62658461-S	ILMN_269141	USP42_PREDICTED	XM_001072044.1	XM_001072044.1		288482	109496609	XM_001072044.1	Usp42_predicted	XP_001072044.1	ILMN_1372226	0003990593	S	3817	CTCTCGAGCTATGAGGCCGTTGGCCATTTCCGGAGAACAGAGGGCACCTT				12p11	PREDICTED: Rattus norvegicus ubiquitin specific protease 42 (predicted) (Usp42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641844-S	ILMN_61323	TAF6L_PREDICTED	XM_219557.4	XM_219557.4		309194	109459826	XM_219557.4	Taf6l_predicted	XP_219557.2	ILMN_1359063	0006590066	S	1962	GCTGGGCGCTCTCAGACTATTCGCTGTACCTGCCGCTATGAGGCTGCTAA	1	-	211445335-211445344:211445345-211445384	1q43	PREDICTED: Rattus norvegicus TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor (predicted) (Taf6l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651724-S	ILMN_56306	PLEKHJ1	XM_234909.4	XM_234909.4		314634	109480176	XM_234909.4	Plekhj1	XP_234909.1	ILMN_1366259	0002970138	S	470	CTACAGGAATGAGATCAGGAAGATGACCGGCAAGGACCCGCTGGAGCAGT	7	+	10428151-10428184:10428252-10428267	7q11	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family J member 1 (Plekhj1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576512-S	ILMN_282024	OLR879	NM_001000586.1	NM_001000586.1		366793	47576512	NM_001000586.1	Olr879	NP_001000586.1	ILMN_1370495	0006400138	S	527	GCTGTGACGCTGCTCCCATCCTGAAGATCAGCTGCTCCAACACTGAGTTC	7	-	2466600-2466649	7q11	Rattus norvegicus olfactory receptor 879 (Olr879), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr879	Olr879
Rattus norvegicus	RefSeq	GI_47576858-S	ILMN_274446	OLR211	NM_001000196.1	NM_001000196.1		293358	47576858	NM_001000196.1	Olr211	NP_001000196.1	ILMN_2040494	0004810392	S	868	TACAGCCTTAGAAACAAAGATGTGAAAGGGGCTCTTGGAAAGTTGGTTGG	1	-	163987216-163987265	1q33	Rattus norvegicus olfactory receptor 211 (Olr211), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr211; ratchr1-164083610-164082684_ORF	Olr211; ratchr1-164083610-164082684_ORF
Rattus norvegicus	RefSeq	GI_62641704-S	ILMN_286911	PTPRCAP	NM_001024289.1	NM_001024289.1		499300	66730346	NM_001024289.1	Ptprcap	NP_001019460.1	ILMN_1350554	0000580563	S	758	ACCAGTTCCCCGAAGTGTGTGCGCCCCAGATAGACACTGGACAGGTGATA	1	+	206740816-206740865	1q42	Rattus norvegicus protein tyrosine phosphatase, receptor type, C-associated protein (Ptprcap), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575904-S	ILMN_290075	OLR1461	NM_001000022.1	NM_001000022.1		287349	47575904	NM_001000022.1	Olr1461	NP_001000022.1	ILMN_1353234	0002510315	S	14	CAACAGTGACCCACTTCATCCTCAGGGGCTTCTCTGATGTTCCACAGCTG	10	+	45107854-45107903	10q22	Rattus norvegicus olfactory receptor 1461 (Olr1461), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1461	Olr1461
Rattus norvegicus	RefSeq	GI_62661298-S	ILMN_51280	RGD1561412_PREDICTED	XM_573750.2	XM_573750.2		498490	109501569	XM_573750.2	RGD1561412_predicted	XP_573750.2	ILMN_2040295	0001820068	S	590	AGGTCGTCAAGCTGGCCTGCATGGACACTTACTTGGTTGAGGTGCTGATG	15	-	26056799-26056848	15p14	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr735 (predicted) (RGD1561412_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663093-S	ILMN_289854	POLS_PREDICTED	XM_001062703.1	XM_001062703.1		306672	109460665	XM_001062703.1	Pols_predicted	XP_001062703.1	ILMN_1373805	0005860148	S	3877	CTGTCATCCACAGGCACAGGTATGTGTGTCCATCCCCGTAATGGTGAACC				17p14	PREDICTED: Rattus norvegicus polymerase (DNA directed) sigma (predicted) (Pols_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662932-S	ILMN_58427	LOC498663	XM_573944.1	XM_573944.1		498663	62662932	XM_573944.1	LOC498663	XP_573944.1	ILMN_1358067	0002850408	S	12	GTGGCCATCAGAGCACATGGCCTCTTCCCTGTAAACACTGGCCTCACACT					PREDICTED: Rattus norvegicus similar to F-box only protein 25 (LOC498663), mRNA.					
Rattus norvegicus	RefSeq	GI_62665746-S	ILMN_64131	SFRS3_PREDICTED	XM_342107.2	XM_342107.2		361814	62665746	XM_342107.2	Sfrs3_predicted	XP_342108.2	ILMN_1354928	0001570538	S	2512	CCACCCTGTATTGGACCATAGGCACTGACCGAGGCATGAAGCTGAACAGG				20p12	PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 3 (SRp20) (predicted) (Sfrs3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42761471-S	ILMN_279839	CYP24A1	NM_201635.1	NM_201635.1		25279	42761471	NM_201635.1	Cyp24a1	NP_963966.1	ILMN_1356862	0003440026	S	3145	GAGTTTTGGCCTGGTCTATGTTGGCTCCTGGGTTCAATCCTCAGCACTAC	3	-	161539738-161539787	3q42	Rattus norvegicus cytochrome P450, subfamily 24 (Cyp24a1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence TAS]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence IDA]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence ISS]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42369] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the hydroxylation of C-24 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycalciferol [goid 8403] [evidence TAS]; Catalysis of the hydroxylation of C-24 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycalciferol [goid 8403] [evidence IDA]; Catalysis of the hydroxylation of C-24 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycalciferol [goid 8403] [evidence ISS]; Catalysis of the hydroxylation of C-24 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycalciferol [goid 8403] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor [goid 16709] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the hydroxylation of C-1 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 1-alpha,25-dihydroxycalciferol [goid 30342] [evidence ISS]; Catalysis of the hydroxylation of C-1 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 1-alpha,25-dihydroxycalciferol [goid 30342] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp24; VITD12; 25-hydroxyvitaminD324-hydroxylase	Cyp24; VITD12; 25-hydroxyvitaminD324-hydroxylase
Rattus norvegicus	RefSeq	GI_62652581-S	ILMN_53139	LOC315051	XM_235395.3	XM_235395.3		315051	62652581	XM_235395.3	LOC315051	XP_235395.3	ILMN_1362826	0006510092	S	484	CTGGTCCCTCTGTGGTTCCATGTCCTACAGGTGAGTCAGAACTGCAACTC				7q34	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC315051), mRNA.					
Rattus norvegicus	RefSeq	GI_47575930-S	ILMN_281048	OLR1482	NM_001000026.1	NM_001000026.1		287484	47575930	NM_001000026.1	Olr1482	NP_001000026.1	ILMN_1364014	0002630369	S	477	TACCTTGCTCATGGCCAGATTGTCATTCTGTGAGGACAATGTGATCCCCC	10	+	60635257-60635306	10q24	Rattus norvegicus olfactory receptor 1482 (Olr1482), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1482	Olr1482
Rattus norvegicus	RefSeq	GI_62645318-S	ILMN_52958	LOC366086	XM_345376.2	XM_345376.2		366086	62645318	XM_345376.2	LOC366086	XP_345377.2	ILMN_1355075	0005570088	S	1082	CCCCCCAAAGGGGAGACCAAAAAGAAGCGAGCACCCTGGCTTATCCATTG				3q24	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC366086), mRNA.					
Rattus norvegicus	RefSeq	GI_62643086-A	ILMN_278504	TGAP1	NM_001007635.2	NM_001007635.2		294892	76443659	NM_001007635.2	tGap1	NP_001007636.2	ILMN_1376970	0000460204	S	3825	GCTTCTGGAAAATCACCTATTATGAACGAATTCCTAGGTGGCCGCAACAG	2	+	92223981-92224030	2q23	Rattus norvegicus GTPase activating protein testicular GAP1 (tGap1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_13929199-A	ILMN_270387	SEPT9	NM_031837.1	NM_031837.1		83788	13929199	NM_031837.1	Sept9	NP_114025.1	ILMN_1376484	0006290050	A	2736	AATCAGGACTTTGAAGGAAATCTCCAGCACGTCGGACCCAGGGCACCCCG	10	+	107479693-107479742	10q32.3	Rattus norvegicus septin 9 (Sept9), transcript variant 1, mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2 [goid 3918] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Slpa; Msf; Eseptin	Slpa; Msf; Eseptin
Rattus norvegicus	RefSeq	GI_62658792-S	ILMN_70229	RGD1560258_PREDICTED	XM_341069.3	XM_341069.3		360799	109495691	XM_341069.3	RGD1560258_predicted	XP_341070.2	ILMN_1354716	0006400148	S	290	CACGCACACGCCTCGCATGAACGGGAACCTGAGACAGGAGGATCTTGAGT	12	-	27848097-27848123:27850535-27850542:27850543-27850557	12q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930579G22 (predicted) (RGD1560258_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643921-S	ILMN_273272	FCGR1	XM_001062370.1	XM_001062370.1		295279	109467224	XM_001062370.1	Fcgr1	XP_001062370.1	ILMN_1362025	0004200411	S	1054	AGCGATGACGTGTATGAAGAAGTAACAGCCACTGTAAGATAGGCCACCCC				2q34	PREDICTED: Rattus norvegicus Fc receptor, IgG, high affinity I (Fcgr1), mRNA.					
Rattus norvegicus	RefSeq	GI_18426827-S	ILMN_51787	CYP26A1	NM_130408.1	NM_130408.1		154985	18426827	NM_130408.1	Cyp26a1	NP_569092.1	ILMN_1366914	0005910372	S	1420	GCTGCTAAATGGACCTCCTACAATGAAGACAAGCCCCACCGTCTACCCTG				1q53	Rattus norvegicus cytochrome P450, family 26, subfamily A, polypeptide 1 (Cyp26a1), mRNA.		The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of retinoic acid, one of the three components that makes up vitamin A [goid 34653] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence IEA]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEA]	Interacting selectively with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid [goid 1972] [evidence ISS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA];  [goid 8401] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp26	Cyp26
Rattus norvegicus	RefSeq	GI_62658913-S	ILMN_54928	CUTL2_PREDICTED	XM_222184.4	XM_222184.4		288665	109495914	XM_222184.4	Cutl2_predicted	XP_222184.4	ILMN_1362087	0005700706	S	4450	GACTGCTCTTCATTGCACACCCCCCAAGCAAAAGAGACTGGGGAACAGGT	12	+	35909738-35909787	12q16	PREDICTED: Rattus norvegicus cut-like 2 (Drosophila) (predicted) (Cutl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658759-S	ILMN_278348	LOC368190	XM_001077538.1	XM_001077538.1		368190	109497207	XM_001077538.1	LOC368190	XP_001077538.1	ILMN_1352098	0006100520	S	1547	CTGTGACGAGACTTGGAGCTTGAATTCCTGAGTGTGGCCTGTGCATCTGC				12q12	PREDICTED: Rattus norvegicus similar to Williams-Beuren syndrome critical region 18 (LOC368190), mRNA.					
Rattus norvegicus	RefSeq	GI_62656788	ILMN_268188	RGD1307981_PREDICTED	XM_001081177.1	XM_001081177.1		360602	109491660	XM_001081177.1	RGD1307981_predicted	XP_001081177.1	ILMN_1650615	0006860131	S	3260	CATGTGAAGCAGACTGGGATTCCATTTTTACACCTCTGCTATCCTTAGCC				10q26	PREDICTED: Rattus norvegicus similar to cisplatin resistance-associated overexpressed protein (predicted) (RGD1307981_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646550-S	ILMN_262796	RGD1565465_PREDICTED	XM_001070413.1	XM_001070413.1		499956	109469349	XM_001070413.1	RGD1565465_predicted	XP_001070413.1	ILMN_1349135	0004810167	S	1596	CCCAGGCATTGGGAACTTTGGTGACCGGTACTTTGGGACAGATGCAGTCC	3	-	170707990-170708029:170708107-170708116	3q43	PREDICTED: Rattus norvegicus similar to Uridine-cytidine kinase 1-like 1 (predicted), transcript variant 1 (RGD1565465_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576262-S	ILMN_300506	OLR1302	NM_001000463.1	NM_001000463.1		300603	47576262	NM_001000463.1	Olr1302	NP_001000463.1	ILMN_1358202	0006290458	S	435	CTCCCTAATTTCAGGAGTGTACATTATTGGTGTGATCTGTGCATCAGCTC	8	-	42322583-42322632	8q22	Rattus norvegicus olfactory receptor 1302 (Olr1302), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1302	Olr1302
Rattus norvegicus	RefSeq	GI_27719550-S	ILMN_268168	OLR1146_PREDICTED	XM_001075891.1	XM_001075891.1		300407	109484320	XM_001075891.1	Olr1146_predicted	XP_001075891.1	ILMN_1367777	0003170408	S	711	AAGAGGCAATTACAAGGCCCTTTCTACCTGTGGGTCTCACTTGTCAGTTG				8q13	PREDICTED: Rattus norvegicus olfactory receptor 1146 (predicted) (Olr1146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57863756-S	ILMN_267267	TMCO1	NM_001009631.1	NM_001009631.1		289196	57863756	NM_001009631.1	Tmco1	NP_001009631.1	ILMN_1367197	0000510348	S	672	GGCACCTGGCCACATTCTCGGTTTGAGCTATTTCTCGGCTGTGGATATGA	13	+	82994778-82994827	13q23	Rattus norvegicus transmembrane and coiled-coil domains 1 (Tmco1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109554	MGC109554
Rattus norvegicus	RefSeq	Rn.50843	ILMN_272008	KIF5C_PREDICTED	XM_001064328.1	XM_001064328.1		311024	109469893	XM_001064328.1	Kif5c_predicted	XP_001064328.1	ILMN_1530430	0006200025	S	744	ACTTGGAGTTTCATATCAAGGTTTCCTATTTTGAGATCTACTTGGACAAA				3q12	PREDICTED: Rattus norvegicus kinesin family member 5C (predicted) (Kif5c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645078-S	ILMN_272008	KIF5C_PREDICTED	XM_001064328.1	XM_001064328.1		311024	109469893	XM_001064328.1	Kif5c_predicted	XP_001064328.1	ILMN_1349624	0004150215	S	3150	GACACTATCCTGCATCATCTCCAACAGCCGTCCATGCCGTCCGGGGAGGA				3q12	PREDICTED: Rattus norvegicus kinesin family member 5C (predicted) (Kif5c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650877	ILMN_58936	DHRS7_PREDICTED	XM_234304.3	XM_234304.3		299131	62650877	XM_234304.3	Dhrs7_predicted	XP_234304.3	ILMN_1650190	0003360433	S	2496	GACAACAGCAGGGAGCGCAGGAGTGGACCTGTATTCCTCCACCACCAGAA				6q24	PREDICTED: Rattus norvegicus dehydrogenase/reductase (SDR family) member 7 (predicted) (Dhrs7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654263-S	ILMN_48475	GNAT1_PREDICTED	XM_343480.3	XM_343480.3		363143	109483947	XM_343480.3	Gnat1_predicted	XP_343481.2	ILMN_1367275	0000940519	S	910	GCATCTGCTTTCCCGATTACGATGGACCTAACACTTACGACGATGCCGGC	8	-	112927072-112927098:112927215-112927237	8q32	PREDICTED: Rattus norvegicus guanine nucleotide binding protein, alpha transducing 1 (predicted) (Gnat1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642162-S	ILMN_51800	UHRF2_PREDICTED	XM_219801.4	XM_219801.4		309331	109459998	XM_219801.4	Uhrf2_predicted	XP_219801.3	ILMN_1357820	0004210025	S	3455	CTCCTAGTGGTCTCCATCTGCAGCTTAGGAGGGCTGTGCTGGCTTTTGAG	1	+	233841202-233841251	1q52	PREDICTED: Rattus norvegicus ubiquitin-like, containing PHD and RING finger domains 2 (predicted) (Uhrf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.2173	ILMN_51800	UHRF2_PREDICTED	XM_219801.4	XM_219801.4		309331	109459998	XM_219801.4	Uhrf2_predicted	XP_219801.3	ILMN_1530420	0004050168	S	3270	ATGGTGATTGTTTTCTGGTGTTTTATGCAAATTGACTACTAATGACTAAT	1	+	233841017-233841066	1q52	PREDICTED: Rattus norvegicus ubiquitin-like, containing PHD and RING finger domains 2 (predicted) (Uhrf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660302-S	ILMN_263358	ENAM_PREDICTED	XM_001073517.1	XM_001073517.1		289525	109500417	XM_001073517.1	Enam_predicted	XP_001073517.1	ILMN_1370394	0003360091	S	3666	TGGAGGGCCAAGCCTACCTAATGGTGCTCTCTCCACACCCACCGAAAGTC				14p22-p21	PREDICTED: Rattus norvegicus enamelin (predicted) (Enam_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661591-S	ILMN_274371	LOC681273	XR_006018.1	XR_006018.1		681273	109458910	XR_006018.1	LOC681273		ILMN_1373474	0000870465	S	747	GAAGGCAGGACATGGGAAATCTAAAGGCTACAACAGCTGCCCTGTGGCCC	1	-	127524822-127524846:127525836-127525860	1q31	PREDICTED: Rattus norvegicus similar to spermatogenesis associated 13 (LOC681273), mRNA.					
Rattus norvegicus	RefSeq	GI_41281618	ILMN_267926	PCDHA10	NM_053939.1	NM_053939.1		116778	41281618	NM_053939.1	Pcdha10	NP_446391.1	ILMN_1650026	0003450148	S	2418	CCCTTGCCCAGTGACCGAAGTGGGAATGGAAAATCATTCTGCTGGAGGAG	18	+	29724020-29724069	18p11	Rattus norvegicus protocadherin alpha 10 (Pcdha10), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	rCNRv10	rCNRv10
Rattus norvegicus	RefSeq	GI_62660025-S	ILMN_65527	LOC289879	XM_214125.3	XM_214125.3		289879	62660025	XM_214125.3	LOC289879	XP_214125.3	ILMN_1356801	0003450273	S	849	TCCAGGGTAGTTCCTGTTCCTACGGAAGCATGGGTTGGGGGGTGCAGTGT				14p22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC289879), mRNA.					
Rattus norvegicus	RefSeq	GI_62642838-S	ILMN_63528	CDK7	XM_215467.4	XM_215467.4		171150	109464292	XM_215467.4	Cdk7	XP_215467.2	ILMN_1370151	0001740110	S	990	TCGTCCAGGGCCAACACCTGGATGCCAGCTTCCAAGACCAAACTGTCCAG	2	-	31502113-31502162	2q12	PREDICTED: Rattus norvegicus cyclin-dependent kinase 7 (homolog of Xenopus MO15 cdk-activating kinase) (Cdk7), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence TAS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the reaction: ATP + (DNA-directed RNA polymerase) = ADP + phospho-(DNA-directed RNA polymerase) [goid 8353] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718253-S	ILMN_278081	LOC689658	XM_001071539.1	XM_001071539.1		689658	109513374	XM_001071539.1	LOC689658	XP_001071539.1	ILMN_1349308	0006660064	S	581	ACGGATCCCAGGAAGACAGCCCCCTGAGGAATGAGTTTCTCTCTCAGGAA	Un|NW_047879.1	+	93525-93574		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC689658), mRNA.					
Rattus norvegicus	RefSeq	GI_62641188	ILMN_266409	RGD1564255_PREDICTED	XM_001078790.1	XM_001078790.1		499253	109462747	XM_001078790.1	RGD1564255_predicted	XP_001078790.1	ILMN_1649925	0004200136	S	1957	CCTTAGGGACTGCCTGCTGCGACGCCGAGACCTCTTCCATTGTGTCCTAG				1q35	PREDICTED: Rattus norvegicus similar to CDNA sequence BC063749 (predicted) (RGD1564255_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643177-S	ILMN_57830	RGD1566273_PREDICTED	XM_577997.2	XM_577997.2		502513	109464541	XM_577997.2	RGD1566273_predicted	XP_577997.2	ILMN_1359777	0003610082	S	1343	GTATCCACCCTGGACACAGCACGGTGACCTGTGAGCGTATGTACCAAGAG	2	+	76961548-76961597	2q22	PREDICTED: Rattus norvegicus similar to exo-alpha-sialidase (EC 3.2.1.18) - Trypanosoma cruzi (predicted) (RGD1566273_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644035-S	ILMN_274556	RGD1565469_PREDICTED	XM_001063293.1	XM_001063293.1		502584	109467239	XM_001063293.1	RGD1565469_predicted	XP_001063293.1	ILMN_1368583	0002350519	S	773	CGCTCATGCGAGTAACCCCAGCCACAGCAGAAGAGGACAAAGAAAGGGTC				2q34	PREDICTED: Rattus norvegicus RGD1565469 (predicted) (RGD1565469_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394232-S	ILMN_294217	MAPK9	NM_017322.1	NM_017322.1		50658	8394232	NM_017322.1	Mapk9	NP_059018.1	ILMN_1357949	0000940253	S	2322	GTCTTTCTCACTGACAGAAGCCACCACGTCCAGCCAGAGCACATGGTCTC	10	+	35384018-35384067	10q22	Rattus norvegicus mitogen-activated protein kinase 9 (Mapk9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	SAPK	SAPK
Rattus norvegicus	RefSeq	GI_34878732-S	ILMN_272875	MFHAS1_PREDICTED	XM_001058880.1	XM_001058880.1		306508	109504253	XM_001058880.1	Mfhas1_predicted	XP_001058880.1	ILMN_1357770	0005340725	S	3623	CATCTGCCCCAAGAACGGCAGCGAGCGCGTGAATGTGGCTTTGGTTTACC				16q12.2	PREDICTED: Rattus norvegicus malignant fibrous histiocytoma amplified sequence 1 (predicted) (Mfhas1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653149-S	ILMN_267706	ITGA5_MAPPED	XM_001070203.1	XM_001070203.1		315346	109483010	XM_001070203.1	Itga5_mapped	XP_001070203.1	ILMN_1371909	0007000309	S	4151	GGCAAGTCGGGAATTACCCAGGACACAGTGGCAAACAGACCTGGAACCTC				7q36	PREDICTED: Rattus norvegicus integrin alpha 5 (mapped) (Itga5_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_68163500	ILMN_266864	LOC497888	NM_001025031.1	NM_001025031.1		497888	68163500	NM_001025031.1	LOC497888	NP_001020202.1	ILMN_1530497	0000840332	S	194	TATTTTTAAGTATGCACCAATGTTTGAGAGCGACTTTATCCAGATTAGCA	10	+	31533460-31533509	10q21	Rattus norvegicus hypothetical protein LOC497888 (LOC497888), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62655991-S	ILMN_266864	LOC497888	NM_001025031.1	NM_001025031.1		497888	68163500	NM_001025031.1	LOC497888	NP_001020202.1	ILMN_1373718	0006520706	S	2011	AACCCATTTAAAGACGACCCACAGCAGGAAGCAGCAACAGAGACCAGGGC	10	+	31536385-31536395:31536396-31536434	10q21	Rattus norvegicus hypothetical protein LOC497888 (LOC497888), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62652752-S	ILMN_263270	GRAP2	NM_001034944.1	NM_001034944.1		366962	77917585	NM_001034944.1	Grap2	NP_001030116.1	ILMN_1353462	0003940452	S	959	TTTGAGGCCCTGGAGGAAGATGAGCTGGGGCTCAGAAGTGGAGAGGTGGT	7	+	118930921-118930970	7q34	Rattus norvegicus GRB2-related adaptor protein 2 (Grap2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC125066	MGC125066
Rattus norvegicus	RefSeq	GI_62656220-S	ILMN_54921	LOC497923	XM_573110.1	XM_573110.1		497923	62656220	XM_573110.1	LOC497923	XP_573110.1	ILMN_1361948	0003850168	S	2264	GCCATGCACTCCTCAAGAACTAAGTCAGTTGAGACAAGAGCGTGCCCGGA				10q23	PREDICTED: Rattus norvegicus similar to zinc finger protein 286 (LOC497923), mRNA.					
Rattus norvegicus	RefSeq	GI_6981397-S	ILMN_272296	PRKCB1	XM_001079542.1	XM_001079542.1		25023	109462821	XM_001079542.1	Prkcb1	XP_001079542.1	ILMN_1351123	0002690152	S	1923	CATGGTGCCTCTGTTGGCATCCGTCATGTGGAGAGCTTGTCTTAGAGGGC				1q36	PREDICTED: Rattus norvegicus protein kinase C, beta 1 (Prkcb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42488] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence ISS];  [goid 5246] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17893151] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643560-S	ILMN_53376	LOC499636	XM_574959.1	XM_574959.1		499636	62643560	XM_574959.1	LOC499636	XP_574959.1	ILMN_1372348	0005670161	S	1589	CAGACGACCTGAGTTCAGGACCTTGCACCCTCATGGGAGGTTTACTCCAG				2q31	PREDICTED: Rattus norvegicus similar to Mss4 protein (LOC499636), mRNA.					
Rattus norvegicus	RefSeq	GI_18677746-S	ILMN_277159	TAS1R3	NM_130818.1	NM_130818.1		170634	18677746	NM_130818.1	Tas1r3	NP_570831.1	ILMN_1371907	0001170600	S	2195	GGGTCAGCCTGGGCTTGGTGCACATCACCAATGCAGTGTTAGCTTTCCTC	5	-	172718883-172718932	5q36	Rattus norvegicus taste receptor, type 1, member 3 (Tas1r3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IC ]	The series of events required for a sweet taste stimulus to be received and converted to a molecular signal [goid 1582] [evidence TAS]; The series of events required for a sweet taste stimulus to be received and converted to a molecular signal [goid 1582] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required to receive a sweet taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50916] [evidence IDA]; The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates [goid 50917] [evidence ISS]; The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates [goid 50917] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence IDA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence IDA]; Combining with soluble sweet compounds to initiate a change in cell activity. These receptors are responsible for the sense of sweet taste [goid 33041] [evidence ISS]	T1r3	T1r3
Rattus norvegicus	RefSeq	GI_62649423-S	ILMN_50898	LOC500520	XM_575881.1	XM_575881.1		500520	62649423	XM_575881.1	LOC500520	XP_575881.1	ILMN_1360249	0003850008	S	754	GGAGCTGTAGATACAAGCCTCACCAACAGAATTCAAGAGATGGACGAGAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500520), mRNA.					
Rattus norvegicus	RefSeq	GI_11177893-S	ILMN_289114	TSC1	NM_021854.1	NM_021854.1		60445	11177893	NM_021854.1	Tsc1	NP_068626.1	ILMN_1350934	0006290008	S	3326	GTAGCTTTTCTGAGACCCTGAAGACAGAACTGGGCAAAGACTCGGCGGGC	3	+	7672778-7672827	3p12	Rattus norvegicus tuberous sclerosis 1 (Tsc1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway [goid 33596] [evidence ISS]; A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway [goid 33596] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IMP]; Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice [goid 44430] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence IEA]; The directed movement of rRNA from the nucleus to the cytoplasm [goid 6407] [evidence ISS]; The directed movement of rRNA from the nucleus to the cytoplasm [goid 6407] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence IEA]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence IEA]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31397] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31397] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the TOR signaling pathway [goid 32007] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the TOR signaling pathway [goid 32007] [evidence IEA]; Any process that initiates the activity of an inactive GTPase of the Rho family through the replacement of GDP by GTP [goid 32862] [evidence ISS]; Any process that initiates the activity of an inactive GTPase of the Rho family through the replacement of GDP by GTP [goid 32862] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEA]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 32956] [evidence IMP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein [goid 43666] [evidence ISS]; Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein [goid 43666] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that reduces cell size [goid 45792] [evidence ISS]; Any process that reduces cell size [goid 45792] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51492] [evidence IMP]; Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51492] [evidence ISS]; Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51492] [evidence IEA]; Any process that modulates the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51893] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51894] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51894] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Modulates the rate of GTP hydrolysis by a GTPase [goid 30695] [evidence IMP]; Interacting selectively with a GTPase activating protein [goid 32794] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13994172-I	ILMN_295192	NR4A3	NM_031628.1	NM_031628.1		58853	13994172	NM_031628.1	Nr4a3	NP_113816.1	ILMN_1375922	0001230128	S	3963	GCTCCTGGAGGCTGAGTTACAGAATAATCAAATGGGGTGTTCGTGGTGAC	5	+	64752873-64752922	5q22	Rattus norvegicus nuclear receptor subfamily 4, group A, member 3 (Nr4a3), transcript variant 1, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process by which the anatomical structures of the semicircular canals are generated and organized. Morphogenesis pertains to the creation of form [goid 48752] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; A reflex process by which a response to an angular or linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the inner ear and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness [goid 60005] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	NOR-2	NOR-2
Rattus norvegicus	RefSeq	GI_62649409-S	ILMN_280564	RGD1311126_PREDICTED	XM_001062289.1	XM_001062289.1		298366	109476898	XM_001062289.1	RGD1311126_predicted	XP_001062289.1	ILMN_1363536	0006380048	S	1766	GAGACGGCAGCAGATCCCCAGTCTCATCAGTGTCCCTGTAGCTTTCTGCA				5q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4922503N01 (predicted) (RGD1311126_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644925-S	ILMN_56011	LAMC3_PREDICTED	XM_231139.4	XM_231139.4		311862	109468030	XM_231139.4	Lamc3_predicted	XP_231139.4	ILMN_1373192	0002370427	S	4376	AACAGGAGCTGGAAGAAGCTAAACAGGTGGCCTCTGGGCTGAGCACTGTG	3	+	11042631-11042656:11043522-11043545	3p12-p11	PREDICTED: Rattus norvegicus laminin gamma 3 (predicted) (Lamc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641288-S	ILMN_277943	TBX6_PREDICTED	XM_001080027.1	XM_001080027.1		365371	109462886	XM_001080027.1	Tbx6_predicted	XP_001080027.1	ILMN_1373212	0001340575	S	1440	CCCCCACCAAATGGCTGGCTTGGGCCTCTCTTCTACCCTTTAGTTCACAC				1q36	PREDICTED: Rattus norvegicus T-box 6 (predicted) (Tbx6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661729	ILMN_57966	LOC290404	XM_224405.3	XM_224405.3		290404	62661729	XM_224405.3	LOC290404	XP_224405.3	ILMN_1650846	0004670692	S	261	GATCCAGTTCAGCTTGACTCACAAGCACTCATGTCCCTCGCAGGAGTGGA				15q11	PREDICTED: Rattus norvegicus similar to 2410004I17Rik protein (predicted) (LOC290404), mRNA.					
Rattus norvegicus	RefSeq	GI_62652770-S	ILMN_63132	LOC503162	XM_578686.1	XM_578686.1		503162	62652770	XM_578686.1	LOC503162	XP_578686.1	ILMN_1373678	0002060671	S	26	GCCACGCATCTTGTATGAAGTCTGGAGTGATGGCACCGAGGCTTTCAAGC				7q34	PREDICTED: Rattus norvegicus similar to Ly6-C antigen gene (LOC503162), mRNA.					
Rattus norvegicus	RefSeq	GI_62660980-S	ILMN_69010	LOC501940	XM_577366.1	XM_577366.1		501940	62660980	XM_577366.1	LOC501940	XP_577366.1	ILMN_1375114	0002450440	S	60	AGCCAGGTCGCTCAGGCTGAGATGTCCCACACCAAGATCCACCAATACAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5230400G24 (LOC501940), mRNA.					
Rattus norvegicus	RefSeq	GI_62078920-S	ILMN_277757	PLSCR2	NM_001014094.1	NM_001014094.1		315883	62078920	NM_001014094.1	Plscr2	NP_001014116.1	ILMN_1364945	0002320288	S	1015	CTGTGGTGGGGACCAATAGGAGACGACGGAGAAGATCTGAAGTCTACACA	8	+	97273936-97273985	8q31	Rattus norvegicus phospholipid scramblase 2 (Plscr2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62078994-S	ILMN_272310	RGD1309106	NM_001014130.1	NM_001014130.1		360864	62078994	NM_001014130.1	RGD1309106	NP_001014152.1	ILMN_1358636	0004120484	S	1348	GCTCTTAAAAGTCAAGCAGAGTGGCTGGAGGGCAGAAAATGGCAGAGAGG	13	-	77633101-77633150	13q22	Rattus norvegicus similar to hypothetical protein (RGD1309106), mRNA.					
Rattus norvegicus	RefSeq	GI_62661406-S	ILMN_63151	LOC498507	XM_344363.2	XM_344363.2		498507	62661406	XM_344363.2	LOC498507	XP_344364.2	ILMN_1352789	0000870300	S	1134	GAGCTGAACACAAACACCCATGGCCGGGTGAGAGGAGATAATGTGGAGCA				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC498507), mRNA.					
Rattus norvegicus	RefSeq	GI_27699403-S	ILMN_63151	LOC498507	XM_344363.2	XM_344363.2		498507	62661406	XM_344363.2	LOC498507	XP_344364.2	ILMN_1371969	0006350253	S	1176	GTGGAGCAGAGTCCTTCAGCTCTGAGTCTCCATAAGGGAACCAATCCTGC				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC498507), mRNA.					
Rattus norvegicus	RefSeq	GI_16758263-S	ILMN_264208	HRH3	NM_053506.1	NM_053506.1		85268	16758263	NM_053506.1	Hrh3	NP_445958.1	ILMN_1365804	0005130279	S	2362	AAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGG	3	-	169155339-169155388	3q43	Rattus norvegicus histamine receptor H3 (Hrh3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IMP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of gamma-aminobutyric acid [goid 14053] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine [goid 14061] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of serotonin [goid 14063] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IDA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]	MGC105370	MGC105370
Rattus norvegicus	RefSeq	GI_62658396-S	ILMN_263348	FLT3	XM_001068655.1	XM_001068655.1		140635	109496532	XM_001068655.1	Flt3	XP_001068655.1	ILMN_1358338	0001340026	S	3458	CTCAGAGCCGCCATCACCACAGGTTCAGGAGAAGACTCACAGAGAAAGAA				12p11	PREDICTED: Rattus norvegicus FMS-like tyrosine kinase 3 (Flt3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby a relatively unspecialized precursor cell acquires specialized features of B cells, T cells, or natural killer cells [goid 30098] [evidence IDA]; The process whereby a relatively unspecialized precursor cell acquires specialized features of B cells, T cells, or natural killer cells [goid 30098] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644092-S	ILMN_58827	IGSF2_PREDICTED	XM_227554.3	XM_227554.3		310727	62644092	XM_227554.3	Igsf2_predicted	XP_227554.3	ILMN_1349278	0001450750	S	3611	CACACCAGATGGGGCCTTGTACTTTGAGTCTGGGGCACTTACTTGGATTG				2q34	PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 2 (predicted) (Igsf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114221	ILMN_267325	V1RG5	NM_001008909.1	NM_001008909.1		494261	57114221	NM_001008909.1	V1rg5	NP_001008909.1	ILMN_1650778	0005130092	S	644	GTCTGGGTCTCATGGCCTATTCAAGTGTCTCCATGGTGAGTATCCTCTGC	1	-	71257010-71257059	1q21	Rattus norvegicus vomeronasal 1 receptor, G5 (V1rg5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645490-S	ILMN_278279	RGD1565840_PREDICTED	XM_001079651.1	XM_001079651.1		295975	109470434	XM_001079651.1	RGD1565840_predicted	XP_001079651.1	ILMN_1372532	0002970341	S	1053	GGCGAAAATGAGACTCCTCACCTTTATGGGAATGGCAGTGGAAAACAAAG				3q32	PREDICTED: Rattus norvegicus similar to Dendritic cell protein GA17 (predicted) (RGD1565840_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577422-S	ILMN_288269	OLR695	NM_001000628.1	NM_001000628.1		404820	47577422	NM_001000628.1	Olr695	NP_001000628.1	ILMN_1371319	0001170139	S	319	GGTGGGGCCGAGATGATTCTTCTGACAGCCATGGCCTATGACCGTTATGT	3	-	73681011-73681060	3q24	Rattus norvegicus olfactory receptor 695 (Olr695), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr695	Olr695
Rattus norvegicus	RefSeq	GI_6981167-S	ILMN_292022	LPL	NM_012598.1	NM_012598.1		24539	6981167	NM_012598.1	Lpl	NP_036730.1	ILMN_1357053	0002810092	S	3420	CGCTGTTGTGGCTATCTGGGGTGTAGATTTGTGGTGCTAACTCTGTGTCC	16	-	22532653-22532702	16p14	Rattus norvegicus lipoprotein lipase (Lpl), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence ISS]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate [goid 4465] [evidence IDA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate [goid 4465] [evidence ISS]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate [goid 4465] [evidence IEA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any triester of glycerol [goid 17129] [evidence IDA]	MGC93586	MGC93586
Rattus norvegicus	RefSeq	GI_62657069-S	ILMN_63749	RGD1564337_PREDICTED	XM_573196.2	XM_573196.2		498000	109489036	XM_573196.2	RGD1564337_predicted	XP_573196.1	ILMN_1354146	0004050520	S	177	ACCCGGAACATCGTGACCGGCCTGGGCATCGGAGCCCTGGTGTTAGCTAT	10	-	90307511-90307560	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein D11Ertd99e (predicted) (RGD1564337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758109-A	ILMN_282187	SLC34A2	NM_053380.1	NM_053380.1		84395	16758109	NM_053380.1	Slc34a2	NP_445832.1	ILMN_1376422	0000130609	S	3546	CCCGCCCCCAAGTACTGCTTCCAATTGCAGGGTGCTGTAAACAAGAGAGG	14	-	62659891-62659940	14q11	Rattus norvegicus solute carrier family 34 (sodium phosphate), member 2 (Slc34a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]	Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA];  [goid 15321] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648319-S	ILMN_62942	SOX5	XM_342784.2	XM_342784.2		140587	62648319	XM_342784.2	Sox5	XP_342785.2	ILMN_1352600	0004230086	S	1155	GCCATGGAGCAGACAAAAGAGTTGTCCCATAGCTCCCGCTACAGGGATGC				4q44	PREDICTED: Rattus norvegicus SRY (sex determining region Y)-box 5 (Sox5), mRNA.					
Rattus norvegicus	RefSeq	GI_19424349-S	ILMN_289906	GBP2	NM_133624.1	NM_133624.1		171164	19424349	NM_133624.1	Gbp2	NP_598308.1	ILMN_1362381	0003780446	S	2096	GACCACTGGGCAGCATCAGAAGAAGTTCGCCCAGCCACATATGTTCCTCC	2	+	240540995-240541044	2q44	Rattus norvegicus guanylate nucleotide binding protein 2 (Gbp2), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC93208	MGC93208
Rattus norvegicus	RefSeq	GI_7106352-S	ILMN_273081	ME1	NM_012600.1	NM_012600.1		24552	7106352	NM_012600.1	Me1	NP_036732.1	ILMN_1365946	0001990288	S	1374	CCCTGGAGTTGCTCTTGGGGTAGTGGCCTGTGGACTGAGACACATCAATG	8	-	91851336-91851385	8q31	Rattus norvegicus malic enzyme 1 (Me1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence ISS]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [pmid 8187880] [evidence ISS]	Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate [goid 4470] [evidence IDA]; Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+. Also decarboxylates oxaloacetate [goid 4473] [evidence ISS]; Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+. Also decarboxylates oxaloacetate [goid 4473] [evidence IDA]; Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+. Also decarboxylates oxaloacetate [goid 4473] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MOD1	MOD1
Rattus norvegicus	RefSeq	GI_32306544-S	ILMN_286992	CSN1S1	NM_138874.2	NM_138874.2		24284	32306544	NM_138874.2	Csn1s1	NP_620229.2	ILMN_1367738	0000070053	S	865	CACCTTCAAGCCCATTGCCCCCAAGGATGCTGAAAACACCAATGTGTGGT	14	-	21870691-21870740	14p21	Rattus norvegicus casein alpha s1 (Csn1s1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Casa; Csna; Csn1	Casa; Csna; Csn1
Rattus norvegicus	RefSeq	GI_62649359-S	ILMN_47826	LOC502973	XM_578479.1	XM_578479.1		502973	62649359	XM_578479.1	LOC502973	XP_578479.1	ILMN_2039965	0004920328	S	15	TGCTCCCACACTCGTGAAGCTGGAAGTGAAGGCACTGCTGAAGAAGGATG					PREDICTED: Rattus norvegicus similar to C87414 protein (LOC502973), mRNA.					
Rattus norvegicus	RefSeq	GI_62650115-S	ILMN_263143	RGD1563334_PREDICTED	XM_001074305.1	XM_001074305.1		502999	109477670	XM_001074305.1	RGD1563334_predicted	XP_001074305.1	ILMN_1349789	0004590086	S	889	GGCCCACAACCTGAGTCTCCTGGGCCTTTTAATGAGGCCGCTTATTTAGA				5q36	PREDICTED: Rattus norvegicus similar to novel protein similar to esterases (predicted) (RGD1563334_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929121-S	ILMN_275129	SPAG4	NM_031792.1	NM_031792.1		83623	13929121	NM_031792.1	Spag4	NP_113980.1	ILMN_1352960	0004540097	S	1325	AAGCAACTGGGGCCACCCACGCTTCACATGCTTATATCGAGTCCGTGCCC	3	+	146476817-146476866	3q42	Rattus norvegicus sperm associated antigen 4 (Spag4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62078470-S	ILMN_283370	LOC288521	NM_001013868.1	NM_001013868.1		288521	62078470	NM_001013868.1	LOC288521	NP_001013890.1	ILMN_1352773	0000630500	S	1166	AACAGGGAACAAGTGCTCTGGAGCACTGAAGTCCGATGGCTGTGGGCGGC	12	-	16645636-16645685	12q11	Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (CD43) (W3/13 antigen) (LOC288521), mRNA.					
Rattus norvegicus	RefSeq	GI_62640878-S	ILMN_58910	LOC499199	XM_574486.1	XM_574486.1		499199	62640878	XM_574486.1	LOC499199	XP_574486.1	ILMN_1370373	0007000176	S	840	CTTCAGGGAGTAAGAGGCACTGGCCCACCCGCCCTAACAAGGACACTGAT				1q32	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC499199), mRNA.					
Rattus norvegicus	RefSeq	GI_62642798-S	ILMN_61683	GFM2	XM_226707.4	XM_226707.4		294672	109464288	XM_226707.4	Gfm2	XP_226707.4	ILMN_1357296	0006180687	S	1980	CATCTCACGGTGTGTGCAGAAGGCCCTGAAGAAAGCTGACAAGCAGGTGC	2	+	27645596-27645617:27647616-27647643	2q12	PREDICTED: Rattus norvegicus G elongation factor, mitochondrial 2 (Gfm2), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21070937-S	ILMN_297809	OTOS	NM_139188.1	NM_139188.1		246044	21070937	NM_139188.1	Otos	NP_631927.1	ILMN_1359439	0005390711	S	163	AGGAAGCAGATCCCAACGCCCAGCCACCAGCCATGCCTTACTGGCCTTTT	9	-	91865495-91865544	9q36	Rattus norvegicus otospiralin (Otos), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IMP]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_34874039-S	ILMN_59568	LOC361225	XM_346948.1	XM_346948.1		361225	34874039	XM_346948.1	LOC361225	XP_346949.1	ILMN_1374651	0003140014	S	328	GTCTCTGCCAAGTCACCGTGGGAACGCTGAAGAAGTGCACACTCGGTAGC					PREDICTED: Rattus norvegicus hypothetical LOC361225 (LOC361225), mRNA.					
Rattus norvegicus	RefSeq	GI_27665033-S	ILMN_53948	RGD1560580_PREDICTED	XM_222167.2	XM_222167.2		288646	109495847	XM_222167.2	RGD1560580_predicted	XP_222167.1	ILMN_1353126	0006020286	S	567	GCAGTACACCAGAGGCGACGGGTCCAAAAAGATTGGCAAGGTCATTTACC	12	+	31881181-31881230	12q14	PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (predicted) (RGD1560580_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978798-S	ILMN_267671	EGR1	NM_012551.1	NM_012551.1		24330	6978798	NM_012551.1	Egr1	NP_036683.1	ILMN_1369005	0001990132	S	2737	GAGTGATGTTTCAGGGGAGGCTTTAGAGCACGATGAGGAAGAGGGCTGAG	18	+	27346975-27347024	18p12	Rattus norvegicus early growth response 1 (Egr1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	zif-268; Ngf1; Krox-24; Ngfi; NGFI-A	zif-268; Ngf1; Krox-24; Ngfi; NGFI-A
Rattus norvegicus	RefSeq	GI_62641624-S	ILMN_49911	RGD1308955	XM_215122.4	XM_215122.4		293628	109459605	XM_215122.4	RGD1308955	XP_215122.3	ILMN_1358283	0000360139	S	1352	GAAGGCAGCTCCTCTGCTGGAGGTTCCCAAGCCTCATTCACCAGGGTGCT	1	-	201685434-201685483	1q41	PREDICTED: Rattus norvegicus similar to Cc1-9 (RGD1308955), mRNA.					
Rattus norvegicus	RefSeq	GI_62659575-S	ILMN_57326	MRPS14_PREDICTED	XM_213906.4	XM_213906.4		289143	109498067	XM_213906.4	Mrps14_predicted	XP_213906.1	ILMN_1373382	0006860079	S	946	AAACCTGTGCTCCGTGTGGTCTGGGCCTGGTACTGAAGGCAAGAGGAAGG	13	+	75620273-75620322	13q22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S14 (predicted) (Mrps14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654097-S	ILMN_63135	LOC363115	XM_343448.2	XM_343448.2		363115	62654097	XM_343448.2	LOC363115	XP_343449.2	ILMN_1369951	0001450408	S	1929	CATGGGGGTAGCAACAGGAACTCCCTAACAGCACGGGTCCTGATTCCGAG				8q31	PREDICTED: Rattus norvegicus similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (LOC363115), mRNA.					
Rattus norvegicus	RefSeq	GI_62654777-S	ILMN_51829	LOC301295	XM_217363.3	XM_217363.3		301295	62654777	XM_217363.3	LOC301295	XP_217363.3	ILMN_1368205	0007050450	S	3664	GGGCTATCAGCGCTATTGAGAACAGTCTGGGGAATTACGGCTCCATGAAG				9q13	PREDICTED: Rattus norvegicus similar to EF-hand domain (C-terminal) containing 1 (LOC301295), mRNA.					
Rattus norvegicus	RefSeq	GI_30348967-S	ILMN_300348	SYTL5	NM_178333.1	NM_178333.1		302538	30348967	NM_178333.1	Sytl5	NP_848016.1	ILMN_1351920	0002360671	S	2128	CATGGGAAGGCTGTGGACTGGATGGACTCTCGTGGGGAAGAACAACGCCT	X	-	24945520-24945569	Xq13	Rattus norvegicus synaptotagmin-like 5 (Sytl5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47059176-S	ILMN_302395	BAT2	NM_212462.1	NM_212462.1		294250	47059176	NM_212462.1	Bat2	NP_997627.1	ILMN_1357588	0004810372	S	6187	CAGGATTACCGAAAGCTGAGCAGCAACCTTGGGGGTCCTGGGTCATCACG	20	+	3737138-3737187	20p12	Rattus norvegicus HLA-B associated transcript 2 (Bat2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662398	ILMN_271165	LOC684180	XM_001069294.1	XM_001069294.1		684180	109503945	XM_001069294.1	LOC684180	XP_001069294.1	ILMN_1650396	0003780725	S	927	GACCCCCCTGGGTCCATGGCCACTTGTATCACATCTGCAGTCTTGGAGAG					PREDICTED: Rattus norvegicus hypothetical protein LOC684180 (LOC684180), mRNA.					
Rattus norvegicus	RefSeq	GI_6981617-S	ILMN_288120	SYCP3	XM_001079975.1	XM_001079975.1		25561	109481814	XM_001079975.1	Sycp3	XP_001079975.1	ILMN_1368138	0006520458	S	457	GTGTTGCAGCAGTGGGAACTGGATATGCAGAAATTTGAGGAACAAGGAGA				7q13	PREDICTED: Rattus norvegicus synaptonemal complex protein 3 (Sycp3), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence ISS]; A proteinaceous core found between sister chromatids during meiotic prophase [goid 800] [evidence ISS]; A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them [goid 802] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The first division of meiosis in which homologous chromosomes are paired and segregated from each other, occurring in the constitutive absence of chiasmata [goid 705] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a female [goid 7066] [evidence ISS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence ISS]; The cell cycle process whereby the side by side pairing and physical juxtaposition of homologous chromosomes is created at the metaphase plate [goid 7129] [evidence ISS]; The cell cycle process whereby the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination [goid 7130] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The replacement of somatic histones within sperm chromatin with sperm-specific histones or protamines with unique DNA-binding properties, resulting in condensation of the sperm chromatin [goid 35093] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651410-S	ILMN_282498	RGD1562891_PREDICTED	XM_001061595.1	XM_001061595.1		500748	109480077	XM_001061595.1	RGD1562891_predicted	XP_001061595.1	ILMN_1358559	0001410082	S	438	AAGCAGCGATGAAATCCTTGCTCGACTGACATCTGCGGTGCAGAGGGAGC					PREDICTED: Rattus norvegicus similar to Rap guanine nucleotide exchange factor 5 (Guanine nucleotide exchange factor for Rap1) (predicted) (RGD1562891_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090205-S	ILMN_289611	MRPL24	NM_001007637.1	NM_001007637.1		295224	56090205	NM_001007637.1	mrpl24	NP_001007638.1	ILMN_1373933	0006840279	S	1445	CCAGAACCACTAGCTTGAGAGGCAATCAATGTGCTTTCCCAATCCCTGGG	2	+	180001576-180001625	2q34	Rattus norvegicus mitochondrial ribosomal protein L24 (mrpl24), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC94307	MGC94307
Rattus norvegicus	RefSeq	GI_27708527-S	ILMN_293820	RGD1565778_PREDICTED	XM_228890.1	XM_228890.1		302638	27708527	XM_228890.1	RGD1565778_predicted	XP_228890.1	ILMN_1367979	0001690167	S	911	AGGCCTGGATCTTCCAGCAGATGCTTCGACTCTCTGATCTGGGCACTTTC	X	+	61299529-61299578	Xq22	PREDICTED: Rattus norvegicus similar to Magea5 (predicted) (RGD1565778_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50511313-S	ILMN_281843	MRGPRX2	NM_001002280.1	NM_001002280.1		404640	50511313	NM_001002280.1	Mrgprx2	NP_001002280.1	ILMN_1363807	0003940066	S	453	CAATGGCCCTGGTTGGTGTGAGACATTTGATTTAATTGCTACTGCATGGC	1	-	98260394-98260443	1q22	Rattus norvegicus MAS-related GPR, member X2 (Mrgprx2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Interacting selectively and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators) [goid 42923] [evidence ISS]	MrgB1	MrgB1
Rattus norvegicus	RefSeq	GI_6981701-S	ILMN_285229	VCSA1	NM_012684.1	NM_012684.1		24867	6981701	NM_012684.1	Vcsa1	NP_036816.1	ILMN_1349405	0005050072	S	1852	AGCTCGAAGGTGTGGCTTTCTGGCAAGCCTTCTGCTCCACCGATGCTCTC	14	-	21376817-21376866	14p21	Rattus norvegicus variable coding sequence A1 (Vcsa1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 48585] [evidence IDA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IDA]	Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]	Smr1g; Arp; RNSMR1G; RATSMR1A; Smr1	Smr1g; Arp; RNSMR1G; RATSMR1A; Smr1
Rattus norvegicus	RefSeq	GI_62663556	ILMN_56063	LOC497716	XM_579571.1	XM_579571.1		497716	62663556	XM_579571.1	LOC497716	XP_579571.1	ILMN_1650862	0007100138	S	1516	CCCCGCATGCCCCGGACTGCTAAGAAGGTTCAACGGGCAGATTTAGAGAA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053689 (LOC497716), mRNA.					
Rattus norvegicus	RefSeq	GI_13928923-S	ILMN_275736	SYT11	NM_031667.1	NM_031667.1		60568	13928923	NM_031667.1	Syt11	NP_113855.1	ILMN_1363764	0004560041	S	2266	TGCTTGCAGGTCAGGGGACCAGGGGATGAAATAAGATGTCCATGTGGCCC	2	-	180873830-180873879	2q34	Rattus norvegicus synaptotagmin XI (Syt11), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence TAS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25453387-S	ILMN_288597	CABIN1	NM_053575.1	NM_053575.1		94165	25453387	NM_053575.1	Cabin1	NP_446027.1	ILMN_1351949	0002760079	S	7136	GACTTTCTCTACAAGCCCGTGTGTACTGACCAGGCCCACAGTCCAGTGCC	20	-	13444881-13444930	20p12	Rattus norvegicus calcineurin binding protein 1 (Cabin1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule [goid 8170] [evidence IEA]; Interacting selectively with the enzyme protein phosphatase 2B [goid 30346] [evidence IDA]	Cain	Cain
Rattus norvegicus	RefSeq	GI_62661300-S	ILMN_51377	RGD1564460_PREDICTED	XM_573751.2	XM_573751.2		498491	109501571	XM_573751.2	RGD1564460_predicted	XP_573751.1	ILMN_1365791	0001090066	S	2713	CCACCGCCTCTCCCGATGGCTCCAGAAGGAGGACTATTTTGATTTGTCCC	15	+	26076037-26076086	15p14	PREDICTED: Rattus norvegicus similar to toll-like receptor 11 (predicted) (RGD1564460_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653432-A	ILMN_298863	MAP2K5	NM_001033987.1	NM_001033987.1		29568	77157801	NM_001033987.1	Map2k5	NP_001029159.1	ILMN_1376514	0005360687	S	1945	GAGACCTCAGCAGGACACTGACCACCCAGGACCAGGCATCAAGGTCACAA				8q24	Rattus norvegicus mitogen activated protein kinase kinase 5 (Map2k5), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 11544482] [evidence EXP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IC ]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IMP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [pmid 11544482] [evidence EXP]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Mek5	Mek5
Rattus norvegicus	RefSeq	GI_16758253-S	ILMN_277865	CNGA1	NM_053497.1	NM_053497.1		85259	16758253	NM_053497.1	Cnga1	NP_445949.1	ILMN_1352813	0006450369	S	1830	CCCTAAAGACCTGGAAGAGAAGGTCACTCGAATGGAGGGGTCAGTGGACC	14	+	38032779-38032828	14p11	Rattus norvegicus cyclic nucleotide gated channel alpha 1 (Cnga1), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]; A protein complex that forms a transmembrane channel through which cations ions may pass in response to an intracellular cyclic nucleotide binding to the channel complex or one of its constituent parts [goid 17071] [evidence IDA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of a cation by a channel that opens when intracellular cyclic nucleotide has been bound by the channel complex or one of its constituent parts [goid 5221] [evidence TAS]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]	HCN; Cncg	HCN; Cncg
Rattus norvegicus	RefSeq	Rn.1100	ILMN_277810	PON2	NM_001013082.1	NM_001013082.1		296851	61556887	NM_001013082.1	Pon2	NP_001013100.1	ILMN_1530349	0003710170	S	1514	AGATAGCATTTCCATGTTTTGTACCTCCAGCTTTGTTTACTGTTTTACAA	4	-	30033424-30033473	4q13	Rattus norvegicus paraoxonase 2 (Pon2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol [goid 4063] [evidence IEA]; Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate [goid 4064] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556887-S	ILMN_277810	PON2	NM_001013082.1	NM_001013082.1		296851	61556887	NM_001013082.1	Pon2	NP_001013100.1	ILMN_1358318	0005360162	S	1403	CACCTCCGTGCCACCAACCTCTAGGAGTCCACTGAAACAGGGAGTGTTAT	4	-	30033535-30033584	4q13	Rattus norvegicus paraoxonase 2 (Pon2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol [goid 4063] [evidence IEA]; Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate [goid 4064] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576364-S	ILMN_266927	OLR1547	NM_001001107.1	NM_001001107.1		406003	47576364	NM_001001107.1	Olr1547	NP_001001107.1	ILMN_1350363	0000050091	S	428	TAACATTGTCCCTGGTAGGTGGATTTATCCATGCCTTAATTCATGAAGGC	11	+	42167700-42167749	11q12	Rattus norvegicus olfactory receptor 1547 (Olr1547), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1547	Olr1547
Rattus norvegicus	RefSeq	GI_62662477-S	ILMN_53776	RGD1565815_PREDICTED	XM_573888.2	XM_573888.2		498610	109503239	XM_573888.2	RGD1565815_predicted	XP_573888.1	ILMN_1353815	0004610390	S	24	CTAGATCACTGCTTCTCGGCCTCACCAGGAAACTAGTAAGTTCCTCTGGG	16	-	20538539-20538588	16p14	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 1 (predicted) (RGD1565815_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718275-S	ILMN_279538	LOC689796	XM_001072032.1	XM_001072032.1		689796	109513392	XM_001072032.1	LOC689796	XP_001072032.1	ILMN_1354724	0004810520	S	649	GACCAGCAACGTCCAGATCCAGCATCATCAGGTCTCAGAAAGTGCAAGAG	Un|NW_047879.1	-	353674-353693:354416-354445		PREDICTED: Rattus norvegicus hypothetical protein LOC689796 (LOC689796), mRNA.					
Rattus norvegicus	RefSeq	GI_62655521	ILMN_53146	PTPRM	XM_343640.2	XM_343640.2		29616	62655521	XM_343640.2	Ptprm	XP_343641.2	ILMN_1650983	0003060427	S	16029	ATCATCCGAAGTGGAGGGTTCTACTAAGCCCAGCGGCAGGACAGCAGCAG				9q37	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, M (Ptprm), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648484	ILMN_48790	LOC297570	XM_232260.4	XM_232260.4		297570	109472873	XM_232260.4	LOC297570	XP_232260.3	ILMN_1651038	0000430092	S	1505	GTGAGCCTGCCTGACCTTATCTCTGGGGAATGTGATCTTTCTTGGTGCCG	4|NW_047708.1	-	77745-77794		PREDICTED: Rattus norvegicus similar to peroxisome biogenesis factor 26 (LOC297570), mRNA.					
Rattus norvegicus	RefSeq	GI_16758787-S	ILMN_286730	PTPN6	NM_053908.1	NM_053908.1		116689	16758787	NM_053908.1	Ptpn6	NP_446360.1	ILMN_1360373	0003840040	S	1996	TCCGCTGGGCAGACAGAGACCTGTAGTCCACACCACCCCCATCTTGTTGT	4	-	160843787-160843826:160843827-160843836	4q42	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 6 (Ptpn6), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein [goid 42105] [evidence ISS]	Any process that stops, prevents, or reduces the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin [goid 2924] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence TAS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; Any process that modulates the frequency, rate or extent of B cell differentiation [goid 45577] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50732] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50860] [evidence ISS]	Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence IEA]; Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence TAS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]	Ptph6; MGC124580; Shp-1	Ptph6; MGC124580; Shp-1
Rattus norvegicus	RefSeq	GI_62645957-S	ILMN_282943	CSRP2BP_PREDICTED	XM_001054440.1	XM_001054440.1		362224	109470925	XM_001054440.1	Csrp2bp_predicted	XP_001054440.1	ILMN_1374515	0006510079	S	2629	CATTTCTGCTTGTTCATCCCGAGTGGAGGAGAGCAGGGATTGCCACGTTC				3q41	PREDICTED: Rattus norvegicus cysteine and glycine-rich protein 2 binding protein (predicted) (Csrp2bp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871652-S	ILMN_68222	KCTD11_PREDICTED	XM_343923.2	XM_343923.2		363634	109488392	XM_343923.2	Kctd11_predicted	XP_343924.1	ILMN_1365727	0002230592	S	1359	GAGGTGCTACGGGTGGCTCTGGAACATGGCTTCCGCCTGGATTCTGTCTT	10	-	56723516-56723565	10q24	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 11 (predicted) (Kctd11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758361-S	ILMN_263830	COX5B	NM_053586.1	NM_053586.1		94194	16758361	NM_053586.1	Cox5b	NP_446038.1	ILMN_1373904	0007050064	S	328	GCTGCACCAAGGCGAGAGCCAGCGATGCCCCAACTGTGGAACACATTACA	9	+	35627146-35627195	9q21	Rattus norvegicus cytochrome c oxidase subunit Vb (Cox5b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence TAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641516-S	ILMN_291652	RGD1308918_PREDICTED	XM_001054804.1	XM_001054804.1		293570	109463051	XM_001054804.1	RGD1308918_predicted	XP_001054804.1	ILMN_1353080	0005690066	S	2604	CAGGCTTAGAAATGAGATGCTGGACTGCCCTGCTTGGGTTGTGCCCCAGG				1q41	PREDICTED: Rattus norvegicus similar to KIAA0157 gene product is novel. (predicted) (RGD1308918_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639333-S	ILMN_293078	RGD1306245_PREDICTED	XM_001078996.1	XM_001078996.1		308493	109461639	XM_001078996.1	RGD1306245_predicted	XP_001078996.1	ILMN_1352851	0003360333	S	1518	CCACGGGCAAGCATGACGGCTCTGTGTTCGGTGTCCGGTACTTTACCTGT				1q21	PREDICTED: Rattus norvegicus similar to CLIP-170-related protein (predicted) (RGD1306245_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664840-A	ILMN_282247	CES7	NM_001012056.1	NM_001012056.1		307660	58865679	NM_001012056.1	Ces7	NP_001012056.1	ILMN_1376497	0004210537	S	1152	GTGGCTACATACTGCCCATGAGGGAAGCGCCTGAGATTCTTTTCGGCTCC	19	+	11926654-11926661:11929246-11929287	19p12	Rattus norvegicus carboxylesterase 7 (Ces7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660371-S	ILMN_66991	SEC3L1_PREDICTED	XM_223340.3	XM_223340.3		305287	62660371	XM_223340.3	Sec3l1_predicted	XP_223340.3	ILMN_1368953	0001770687	S	3086	CCGCAAGGTCATTAAGGAGTATCCCGGCAAGGAAGTGAAGAAGGGTCTGG				14p11	PREDICTED: Rattus norvegicus SEC3-like 1 (S. cerevisiae) (predicted) (Sec3l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090424-S	ILMN_268408	UBE2J2	NM_001007655.1	NM_001007655.1		298689	56090424	NM_001007655.1	Ube2j2	NP_001007656.1	ILMN_1350044	0001190092	S	1287	TGCAGTTGCTGCTGAGGGACACAGGGGCCAGAGCTTGATGCAGGCGAGAC	5	+	172796410-172796459	5q36	Rattus norvegicus ubiquitin-conjugating enzyme E2, J2 homolog (yeast) (Ube2j2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718330-S	ILMN_54180	LOC501366	XM_576779.1	XM_576779.1		501366	62718330	XM_576779.1	LOC501366	XP_576779.1	ILMN_1373025	0004050632	S	689	AGGCAGGGCACTGAGTGCTGGAAGATCCAGGCAGCAGCCTGGGGTAATAT					PREDICTED: Rattus norvegicus LOC501366 (LOC501366), mRNA.					
Rattus norvegicus	RefSeq	GI_62649680-S	ILMN_270194	SFPQ	XM_001058863.1	XM_001058863.1		252855	109477261	XM_001058863.1	Sfpq	XP_001058863.1	ILMN_1371231	0000870538	S	2173	CCTAGAGGAATGGGGCCTGGAACGCCAGCAGGATATGGTAGAGGGAGAGA				5q36	PREDICTED: Rattus norvegicus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) (Sfpq), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948457-S	ILMN_288578	RPAP3	NM_001004243.1	NM_001004243.1		300189	51948457	NM_001004243.1	Rpap3	NP_001004243.1	ILMN_1352344	0001400162	S	1983	GATACGGCGGTGGCTGACCTCCATGATTGGACATTGTTACCTCTTCTGTG				7q36	Rattus norvegicus RNA polymerase II associated protein 3 (Rpap3), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663474-S	ILMN_263050	RGD1562844_PREDICTED	XR_008337.1	XR_008337.1		306892	109505715	XR_008337.1	RGD1562844_predicted		ILMN_1371747	0002810402	S	690	GGTGCCGGCTTCACTGCTGATGATACCCTACAAGGGCGATGAGCTGTGCT				17p12	PREDICTED: Rattus norvegicus similar to serine (or cysteine) proteinase inhibitor, clade B, member 9 (predicted) (RGD1562844_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659600-S	ILMN_58695	VAMP4_PREDICTED	XM_344168.3	XM_344168.3		364033	109498084	XM_344168.3	Vamp4_predicted	XP_344169.2	ILMN_1354870	0003840091	S	1031	TGCTGAGAGAGCTGCGTAACCATCCTGTGCGTATTGCAGGAGTGCCACCC	13	+	78266096-78266145	13q22	PREDICTED: Rattus norvegicus vesicle-associated membrane protein 4 (predicted) (Vamp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577774-S	ILMN_297976	OLR1242	NM_001000450.1	NM_001000450.1		300567	47577774	NM_001000450.1	Olr1242	NP_001000450.1	ILMN_1374831	0005220170	S	763	GGTGCATTTATGTACCTTAAACCCTCTTCAGTTGGGTCTATGGATGAAGG	8	+	40643209-40643258	8q22	Rattus norvegicus olfactory receptor 1242 (Olr1242), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1242	Olr1242
Rattus norvegicus	RefSeq	GI_62645780-A	ILMN_287865	FOXA2	NM_012743.1	NM_012743.1		25099	6981035	NM_012743.1	Foxa2	NP_036875.1	ILMN_1376893	0003520538	S	1682	GGCCCCAAAGGAGCAGTTTCACCTGTCTGTGTCCCTAAATAGCTGGGCCA	3	-	136739493-136739542	3q41	Rattus norvegicus forkhead box A2 (Foxa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any constituent part of a cell, the basic structural and functional unit of all organisms [goid 44464] [evidence ISS]	The formation of ectoderm during gastrulation [goid 1705] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that modulates the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10551] [evidence IEA]; Any process that modulates the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10551] [evidence ISS]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mature cells of the hindbrain. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21533] [evidence ISS]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process whereby a cell becomes capable of differentiating autonomously into a neuron in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed [goid 48665] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	Hnf3b	Hnf3b
Rattus norvegicus	RefSeq	Rn.10948	ILMN_287865	FOXA2	NM_012743.1	NM_012743.1		25099	6981035	NM_012743.1	Foxa2	NP_036875.1	ILMN_1530196	0005340397	S	1974	ATGTAGTTTTAACAGAAAACCAGAGGGTTGTATTGATGTTTAAAAGAGAA	3	-	136739201-136739250	3q41	Rattus norvegicus forkhead box A2 (Foxa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any constituent part of a cell, the basic structural and functional unit of all organisms [goid 44464] [evidence ISS]	The formation of ectoderm during gastrulation [goid 1705] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that modulates the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10551] [evidence IEA]; Any process that modulates the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10551] [evidence ISS]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mature cells of the hindbrain. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21533] [evidence ISS]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process whereby a cell becomes capable of differentiating autonomously into a neuron in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed [goid 48665] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	Hnf3b	Hnf3b
Rattus norvegicus	RefSeq	GI_62649608-S	ILMN_297327	SF3A3	NM_001025698.1	NM_001025698.1		313583	71043735	NM_001025698.1	Sf3a3	NP_001020869.1	ILMN_1356020	0006940338	S	1569	GTGGTTGGCCATGCCTGGGCTTCCGTGAGAAGCCTGAGAAAATTTTTCCC	5	+	144059511-144059511:144059512-144059560	5q36	Rattus norvegicus splicing factor 3a, subunit 3 (Sf3a3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	LRRGT00093; MGC116354	LRRGT00093; MGC116354
Rattus norvegicus	RefSeq	GI_34862163-S	ILMN_50903	CWF19L2_PREDICTED	XM_343131.2	XM_343131.2		362804	109480108	XM_343131.2	Cwf19l2_predicted	XP_343132.1	ILMN_1372638	0002060121	S	2422	GTACCCAGAGGCTTGCCTTACTTTGCTGTAGACTTTGGACTTCAGGGAGG	7	+	479672-479721	7q11	PREDICTED: Rattus norvegicus CWF19-like 2, cell cycle control (S. pombe) (predicted) (Cwf19l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665961-S	ILMN_270566	RGD1566140_PREDICTED	XM_001055761.1	XM_001055761.1		499430	109510096	XM_001055761.1	RGD1566140_predicted	XP_001055761.1	ILMN_1370809	0003520736	S	451	CAATCTGGAGGAAAACGAGATAGTGGATGTTCCGGTGGAGAAGCTGGCCG				20q11	PREDICTED: Rattus norvegicus similar to Leucine rich repeat containing 20 (predicted) (RGD1566140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658356-S	ILMN_66985	RGD1564563_PREDICTED	XM_577205.2	XM_577205.2		501796	109494957	XM_577205.2	RGD1564563_predicted	XP_577205.2	ILMN_1367364	0004070088	S	410	CCTGGATGGGTCTGTCATACAATAACAAGGAAAGCAAGTGGCAGTGGGAG	12	-	1842264-1842313	12p12	PREDICTED: Rattus norvegicus similar to SIGNR4 (predicted) (RGD1564563_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665268-S	ILMN_63330	RGD1562056_PREDICTED	XM_574239.2	XM_574239.2		498950	109508103	XM_574239.2	RGD1562056_predicted	XP_574239.2	ILMN_1373051	0006840731	S	1049	CCCTGTATCAGAGCAAAGGTTACAGTGGCTTCAACTGCGGTCTCCACGGG	19	-	39821820-39821869	19q12	PREDICTED: Rattus norvegicus similar to MARVEL (membrane-associating) domain containing 3 isoform a (predicted) (RGD1562056_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58219525-S	ILMN_275356	RPS6KB2	NM_001010962.1	NM_001010962.1		361696	58219525	NM_001010962.1	Rps6kb2	NP_001010962.1	ILMN_1370952	0006130008	S	1587	AGATGAGAGTGTGCTTGTGTGGGGGGAGGGTGAGCCTTACAATCGTGTAC	1	-	206741086-206741135	1q42	Rattus norvegicus ribosomal protein S6 kinase, polypeptide 2 (Rps6kb2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of ribosomal protein S6 [goid 4711] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62643741-S	ILMN_62479	RGD1304953_PREDICTED	XM_342276.3	XM_342276.3		361979	109465049	XM_342276.3	RGD1304953_predicted	XP_342277.1	ILMN_1360051	0003840059	S	248	GGACTCCTCGAGTGCATGTCTGCCAATCTCCAGCTACAGACTCAGCTTGC	2	-	180371247-180371296	2q34	PREDICTED: Rattus norvegicus similar to SSTK-interacting protein (predicted) (RGD1304953_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647034-S	ILMN_70198	LOC362341	XM_342661.2	XM_342661.2		362341	62647034	XM_342661.2	LOC362341	XP_342662.2	ILMN_1359843	0002120091	S	1939	GTCCAGGGTGAATCCTGAAGCTGTAGCCTCTCTCTGCAGCTCCTGAACGC				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B130055L09 (predicted) (LOC362341), mRNA.					
Rattus norvegicus	RefSeq	GI_62646451-S	ILMN_284247	SPO11_PREDICTED	XM_001053782.1	XM_001053782.1		366261	109471418	XM_001053782.1	Spo11_predicted	XP_001053782.1	ILMN_1365725	0001940730	S	1067	AAGAGATGGAGATGCTGGCCGACTCTAAGACGAAGGCGGAGATCCAAGCC				3q42	PREDICTED: Rattus norvegicus sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae) (predicted) (Spo11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643029-S	ILMN_50780	RGD1564365_PREDICTED	XM_226821.4	XM_226821.4		294793	109464490	XM_226821.4	RGD1564365_predicted	XP_226821.4	ILMN_1349386	0003360273	S	1099	GCAGCAATGGCCTCCAAGATTATCAGGCACTCCCACCCACTGACCCCTTC	2	+	58997024-58997073	2q16	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC37820 (predicted) (RGD1564365_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873962-S	ILMN_50034	RGD1566002_PREDICTED	XM_221003.3	XM_221003.3		303576	109489128	XM_221003.3	RGD1566002_predicted	XP_221003.3	ILMN_1367895	0001190369	S	283	CTCCCTGATTGGCTTCGTGTGGTCACATCTGACAAGGAGACGTAGAAACT	10	+	92101394-92101438:92101439-92101443	10q32.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110001N18 (predicted) (RGD1566002_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638419-S	ILMN_301816	EXOC3	NM_001024964.1	NM_001024964.1		252881	68226708	NM_001024964.1	Exoc3	NP_001020135.1	ILMN_1373269	0006130091	S	1937	AAGAGCGCAAGGAGGGTGCTGAGAAGATGGTCAGAGAGGCGGAACAGCTC	1	+	29926379-29926428	1p11	Rattus norvegicus exocyst complex component 3 (Exoc3), mRNA.		A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		Sec6; rSec6; Sec6l1	Sec6; rSec6; Sec6l1
Rattus norvegicus	RefSeq	GI_62662804-S	ILMN_48230	LOC498648	XM_573930.1	XM_573930.1		498648	62662804	XM_573930.1	LOC498648	XP_573930.1	ILMN_1354944	0000730458	S	2175	CTCCTGGTCCAGGTGCCACCTACCAGCAAAGATGACGAAGCATTGCCCTT					PREDICTED: Rattus norvegicus similar to MGC78955 protein (LOC498648), mRNA.					
Rattus norvegicus	RefSeq	GI_48843732-A	ILMN_276125	VMAC	NM_001001720.1	NM_001001720.1		363327	48843732	NM_001001720.1	Vmac	NP_001001720.1	ILMN_1376302	0005220039	S	166	GACGAGCTGGGTCGCGCCAAGGACCGGGAGATTTTCACCCTCCAAGAGCA	Un|NW_047865.1	+	363252-363277:364019-364042		Rattus norvegicus vimentin-type intermediate filament associated coiled-coil protein (Vmac), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space [goid 19215] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_8393192-I	ILMN_292847	CREM	NM_017334.1	NM_017334.1		25620	8393192	NM_017334.1	Crem	NP_059030.1	ILMN_1375833	0000940025	I	22	CGGCCAACAAGACCACTCTGTATGCAAAAGCCCAACATGGCTGTAACTGG	17	+	62822657-62822692:62822693-62822706	17q12.1	Rattus norvegicus cAMP responsive element modulator (Crem), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence TAS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IEP]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	CREM-17X; Icer	CREM-17X; Icer
Rattus norvegicus	RefSeq	GI_8393192-A	ILMN_292847	CREM	NM_017334.1	NM_017334.1		25620	8393192	NM_017334.1	Crem	NP_059030.1	ILMN_1376694	0004850148	A	146	AGATCCGAGCTCCTACTACTGCTTTGCCACAAGGTGTGGTGATGGCTGCC	17	+	62830705-62830754	17q12.1	Rattus norvegicus cAMP responsive element modulator (Crem), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence TAS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IEP]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	CREM-17X; Icer	CREM-17X; Icer
Rattus norvegicus	RefSeq	GI_6981307-S	ILMN_290309	OPRD1	NM_012617.1	NM_012617.1		24613	6981307	NM_012617.1	Oprd1	NP_036749.1	ILMN_1361683	0004540397	S	1369	CTGAGGAATCAAAGGCTCCGGGTTGGAGGGGTGGGGGTTGGGAGGGCAGA				5q36	Rattus norvegicus opioid receptor, delta 1 (Oprd1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4986] [evidence IEA];  [goid 4986] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34877326-S	ILMN_69965	LOC360933	XM_341210.2	XM_341210.2		360933	109499658	XM_341210.2	LOC360933	XP_341211.2	ILMN_1364979	0002480079	S	780	TCCGAACCGTAGTGATGTCCTTGAGGAAGAGCAGATGCATGGAGAACCCC	14	+	42379287-42379336	14p11	PREDICTED: Rattus norvegicus similar to Ac1591 (LOC360933), mRNA.					
Rattus norvegicus	RefSeq	GI_62661507-S	ILMN_266048	MCPT8L3	XM_001057839.1	XM_001057839.1		408207	109502444	XM_001057839.1	Mcpt8l3	XP_001057839.1	ILMN_1355683	0002900242	S	586	AGATGAAGGCTACTGCTGGGGGAGACTCAGGGGGTCCCGTTGTGTGTGAT				15p12	PREDICTED: Rattus norvegicus mast cell protease 8-like 3 (Mcpt8l3), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662956-S	ILMN_59478	RGD1563853_PREDICTED	XM_341464.3	XM_341464.3		361181	109503554	XM_341464.3	RGD1563853_predicted	XP_341465.2	ILMN_1360919	0006100181	S	3238	CGTGAGGTTGAGCAGAGAGAACAAGGCTCCATAGTGCTGTTGGCATGGTG	16	-	81241961-81242010	16q12.5	PREDICTED: Rattus norvegicus similar to cullin 4A (predicted) (RGD1563853_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577090-S	ILMN_264911	OLR311	NM_001000555.1	NM_001000555.1		365385	47577090	NM_001000555.1	Olr311	NP_001000555.1	ILMN_1370624	0005860685	S	800	GCCCTGAGAGAAGCAAAGTTACCTCAGTGCTGTACTCAATCCTCAGCCCA	1	+	200774569-200774618	1q41	Rattus norvegicus olfactory receptor 311 (Olr311), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-200923762-200924694_ORF; Olr311	ratchr1-200923762-200924694_ORF; Olr311
Rattus norvegicus	RefSeq	GI_57164044-S	ILMN_274846	V1RE27	NM_001009526.1	NM_001009526.1		494246	57164044	NM_001009526.1	V1re27	NP_001009526.1	ILMN_1351482	0001050446	S	315	GAGTGTCTTCCAGGCAGTTACTATCAGCCCCAGAAACTCCTACAGGAAAG	1	-	57429023-57429072	1q12	Rattus norvegicus vomeronasal 1 receptor, E27 (V1re27), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25282444-S	ILMN_273804	ENTPD2	NM_172030.1	NM_172030.1		64467	25282444	NM_172030.1	Entpd2	NP_742027.1	ILMN_1356443	0005360142	S	1674	CAGGGTGAGGTCCATTCGGAGTGGGACTTTTGTTCTGATCTTCAGGGCCC	3	+	3569589-3569638	3p13	Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 2 (Entpd2), mRNA.	A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside diphosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with diphosphate on its glycose moiety [goid 9181] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	NTPDase2; Cd39l1	NTPDase2; Cd39l1
Rattus norvegicus	RefSeq	GI_6978870-S	ILMN_296357	GAD2	NM_012563.1	NM_012563.1		24380	6978870	NM_012563.1	Gad2	NP_036695.1	ILMN_1371012	0000450433	S	1745	CCGCATGGTCATCTCAAACCCTGCAGCAACTCACCAAGACATTGACTTCC	17	+	96321635-96321684	17q12.3	Rattus norvegicus glutamic acid decarboxylase 2 (Gad2), mRNA.	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes [goid 6540] [evidence IDA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence TAS]	Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2 [goid 4351] [evidence IEA]; Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2 [goid 4351] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	gad65	gad65
Rattus norvegicus	RefSeq	GI_62661444-S	ILMN_65094	PRMT5_PREDICTED	XM_344405.3	XM_344405.3		364382	109501598	XM_344405.3	Prmt5_predicted	XP_344406.3	ILMN_1350743	0005690546	S	2534	GTCAGGAGAAAAGGCAGAGGCTTGTGGGAGAGCCCCAGGAGTGTGCATGA	15	-	32575054-32575103	15p13	PREDICTED: Rattus norvegicus protein arginine N-methyltransferase 5 (predicted) (Prmt5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981611-S	ILMN_48442	VAMP1	NM_013090.2	NM_013090.2		25624	76443676	NM_013090.2	Vamp1	NP_037222.2	ILMN_1357688	0002060050	S	672	GTGGCACAGTCCTGAAAGTCACTGCCCGAAGAGAACACCCAGCACCTCCT	4	+	161338485-161338534	4q42	Rattus norvegicus vesicle-associated membrane protein 1 (Vamp1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Syb1	Syb1
Rattus norvegicus	RefSeq	GI_47577150-S	ILMN_268157	OLR337	NM_001000507.1	NM_001000507.1		309225	47577150	NM_001000507.1	Olr337	NP_001000507.1	ILMN_1367398	0006420605	S	474	GATCCAAACCAGCTCCATATTCCAGCTTCATTTCTGTGGCTCTCGGGTCA	1	+	215332977-215333026	1q43	Rattus norvegicus olfactory receptor 337 (Olr337), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-215490934-215491890_ORF	ratchr1-215490934-215491890_ORF
Rattus norvegicus	RefSeq	GI_62665410-S	ILMN_283199	FANCA_PREDICTED	XM_001079493.1	XM_001079493.1		361435	109509026	XM_001079493.1	Fanca_predicted	XP_001079493.1	ILMN_1355147	0001940577	S	4128	TGTGTTACCTCAGGCCAGCAGAAGCATCTCCGAGCTCCAGGATAGCCCTG				19q12	PREDICTED: Rattus norvegicus Fanconi anemia, complementation group A (predicted) (Fanca_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638206-S	ILMN_263573	RGD1309759_PREDICTED	XM_001059157.1	XM_001059157.1		361448	109460370	XM_001059157.1	RGD1309759_predicted	XP_001059157.1	ILMN_1357994	0001690082	S	1242	GGAGACGTAAGACAAAGCGACTGCCAAGAACTCCCAGGTGCCTTTGCTGC				1p13	PREDICTED: Rattus norvegicus similar to cDNA sequence BC013529 (predicted), transcript variant 2 (RGD1309759_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639386-S	ILMN_52689	WTIP_PREDICTED	XM_341839.3	XM_341839.3		361552	109458567	XM_341839.3	Wtip_predicted	XP_341840.3	ILMN_1360450	0002230215	S	1637	CTGGTCTCAGCTCCCACGGCAGAGATCGGAGGGCCTTAGAGATAGATGGT	1	-	86561411-86561460	1q21	PREDICTED: Rattus norvegicus WT1-interacting protein (predicted) (Wtip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47059188-S	ILMN_277508	G7C	NM_212499.1	NM_212499.1		309611	47059188	NM_212499.1	G7c	NP_997664.1	ILMN_1353208	0001450739	S	4199	GCAAGGCCGAATCAACCTGACTCCACAAGCCCCCTCCCCGAAGTCTAGAA	20	-	3863732-3863781	20p12	Rattus norvegicus G7c protein (G7c), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			NG37; C6orf27	NG37; C6orf27
Rattus norvegicus	RefSeq	GI_62718780-S	ILMN_269794	LOC691586	XM_001078931.1	XM_001078931.1		691586	109513948	XM_001078931.1	LOC691586	XP_001078931.1	ILMN_1369470	0006860092	S	825	CCCTGAAACTGCCCCAAGCGAGAAGCAGGTCAAGAAGGAAAAGGAGAGGC	Un|NW_047983.1	+	34484-34533		PREDICTED: Rattus norvegicus similar to Integrin alpha-6 precursor (VLA-6) (CD49f antigen) (LOC691586), mRNA.					
Rattus norvegicus	RefSeq	GI_62655049-S	ILMN_274614	DNAH7	XM_001065965.1	XM_001065965.1		252893	109487138	XM_001065965.1	Dnah7	XP_001065965.1	ILMN_1352554	0002900093	S	11276	TGTTTGATAACATTCTCCTCACCCAGTCTCGCTCATCAGGTTCTGGAGCG					PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 7 (Dnah7), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646791-S	ILMN_58663	RGD1559939_PREDICTED	XM_575360.2	XM_575360.2		500006	109471699	XM_575360.2	RGD1559939_predicted	XP_575360.2	ILMN_1350474	0003390673	S	3720	CAGGACACCTTCCCAAGAAGGCTCCCAAGACCTTACACAGGAGCAGAGAG	4	-	27237526-27237575	4q13	PREDICTED: Rattus norvegicus similar to peroxisome biogenesis factor 1 (predicted) (RGD1559939_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662039-S	ILMN_56056	LOC361091	XM_341376.2	XM_341376.2		361091	62662039	XM_341376.2	LOC361091	XP_341377.2	ILMN_1360938	0005890332	S	2352	GCTGCCGCAAGGATTGTCCCAGAATGGGTAGAGTATGATACCGAGATCCG				15q24	PREDICTED: Rattus norvegicus similar to UDP-glucose ceramide glucosyltransferase-like 2 (LOC361091), mRNA.					
Rattus norvegicus	RefSeq	GI_62662427-S	ILMN_274491	CRLF1_PREDICTED	XM_001070792.1	XM_001070792.1		290655	109503987	XM_001070792.1	Crlf1_predicted	XP_001070792.1	ILMN_1357454	0006510670	S	1305	GTGCTTGGATGCAGAAGTCACACAAGACCCGAAACCAGGACGAGGGGATC				16p14	PREDICTED: Rattus norvegicus cytokine receptor-like factor 1 (predicted) (Crlf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018565-S	ILMN_301864	IMPDH2	NM_199099.1	NM_199099.1		301005	40018565	NM_199099.1	Impdh2	NP_954530.1	ILMN_1374222	0002570059	S	1462	CATTGGTGCCAAGAGCTTAACCCAAGTCAGAGCCATGATGTACTCGGGGG	8	+	113611261-113611289:113611373-113611393	8q32	Rattus norvegicus inosine 5'-phosphate dehydrogenase 2 (Impdh2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence ISS]; The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate [goid 6177] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The expansion of a lymphocyte population by cell division [goid 46651] [evidence IEA]; The expansion of a lymphocyte population by cell division [goid 46651] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: inosine 5'-phosphate + NAD+ + H2O = xanthosine 5'-phosphate + NADH + H+ [goid 3938] [evidence IEA]; Catalysis of the reaction: inosine 5'-phosphate + NAD+ + H2O = xanthosine 5'-phosphate + NADH + H+ [goid 3938] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72938	MGC72938
Rattus norvegicus	RefSeq	GI_62667583-S	ILMN_70246	RGD1564173_PREDICTED	XM_579040.2	XM_579040.2		367947	109511258	XM_579040.2	RGD1564173_predicted	XP_579040.2	ILMN_1354694	0000610050	S	401	GTTCGGAAGTGGACAAAAGTCACTATGTGGAGAAGGCTGCGATTCTGAGG	X	+	144712495-144712544	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1564173_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662100-S	ILMN_272244	RARB	XM_001059523.1	XM_001059523.1		24706	109502148	XM_001059523.1	Rarb	XP_001059523.1	ILMN_1359077	0005270041	S	3848	CTTCTGAACCACCTGCTCTCCCACGGACTGGTCGGGCTAGGAAAGAAGTA					PREDICTED: Rattus norvegicus retinoic acid receptor, beta, transcript variant 2 (Rarb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43068] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. Morphogenesis pertains to the creation of form [goid 48048] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence NAS]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662098-S	ILMN_272244	RARB	XM_001059523.1	XM_001059523.1		24706	109502148	XM_001059523.1	Rarb	XP_001059523.1	ILMN_1359481	0001850270	S	3100	GGCAGTGGCCTCCTCTGGCCTTGTTCAATCACTATGATGCAGACTGACAG					PREDICTED: Rattus norvegicus retinoic acid receptor, beta, transcript variant 2 (Rarb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43068] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. Morphogenesis pertains to the creation of form [goid 48048] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence NAS]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653664-S	ILMN_64459	RGD1563866_PREDICTED	XM_236231.4	XM_236231.4		315652	109483468	XM_236231.4	RGD1563866_predicted	XP_236231.2	ILMN_1372334	0004060471	S	617	CCCCTTCAGCGGCCACCACTGGCGATTTCTATAAGAGGGAAACAAGCTGC	8	-	54601912-54601961	8q24	PREDICTED: Rattus norvegicus RGD1563866 (predicted) (RGD1563866_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61740620-S	ILMN_276183	RARRES2	NM_001013427.1	NM_001013427.1		297073	61740620	NM_001013427.1	Rarres2	NP_001013445.1	ILMN_1370339	0005340341	S	410	GGTAAAGTTCTAGGCCGGATGGTCCACTGCCCAATACTGAAGCAAGGGCC	4	-	76660058-76660107	4q24	Rattus norvegicus retinoic acid receptor responder (tazarotene induced) 2 (Rarres2), mRNA.		The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity [goid 1523] [evidence IEA]; The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity [goid 1523] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC108804	MGC108804
Rattus norvegicus	RefSeq	GI_62664882-S	ILMN_268223	MCM5_PREDICTED	XM_001064207.1	XM_001064207.1		291885	109508445	XM_001064207.1	Mcm5_predicted	XP_001064207.1	ILMN_2038852	0001260561	S	1820	GGAGTGGGGCTCGTCAGCATGAGAGGGATATTGACCGTCGTTCCAGCATC				19p11	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae) (predicted) (Mcm5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27658603-S	ILMN_268223	MCM5_PREDICTED	XM_001064207.1	XM_001064207.1		291885	109508445	XM_001064207.1	Mcm5_predicted	XP_001064207.1	ILMN_2040160	0000840669	S	1913	AGGCCCTCAGCAAGATGAAACTGCAGCCCTTTGCTACGGAGGCCGACGTC				19p11	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae) (predicted) (Mcm5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642823-I	ILMN_62844	MCCC2_PREDICTED	XM_574842.1	XM_574842.1		361884	62642823	XM_574842.1	Mccc2_predicted	XP_574842.1	ILMN_1375598	0001340161	S	100	TCTTCTGTTCCTCATTGGCGGAGTCGAGAGGCGTGGCGCGCTGCACCGAC				2q12	PREDICTED: Rattus norvegicus methylcrotonoyl-Coenzyme A carboxylase 2 (beta) (predicted) (Mccc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659707-S	ILMN_65264	OLFML2B_PREDICTED	XM_222868.4	XM_222868.4		304960	109498156	XM_222868.4	Olfml2b_predicted	XP_222868.4	ILMN_1355412	0000730403	S	2964	GCTTGCAGCCAGAAGCAGGAGTGCGGGGCTCAGGAAAGAAGTGCTAAGTG	13	+	86518651-86518700	13q24	PREDICTED: Rattus norvegicus olfactomedin-like 2B (predicted) (Olfml2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661636-S	ILMN_53238	RGD1311539_PREDICTED	XM_214216.4	XM_214216.4		290322	109501811	XM_214216.4	RGD1311539_predicted	XP_214216.3	ILMN_1366251	0003170286	S	2591	CAGGGCTCACTGGGGATAACTCTTGGACTCAGCCGCCTACAGTGCTATGC	15	+	44389181-44389230	15p12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10871 (predicted) (RGD1311539_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664068-A	ILMN_263803	B4GALT6	NM_031740.1	NM_031740.1		65196	13929041	NM_031740.1	B4galt6	NP_113928.1	ILMN_1376522	0005890452	S	5503	GCAGAGTTGTTGAGAAGCAAACTGTCGCCGTGTTTTTTGGAAGGTGGAAG	18	-	12421232-12421281	18p12	Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 (B4galt6), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide [goid 6688] [evidence TAS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the reaction: UDP-galactose + glucosylceramide = lactosylceramide (galactosyl-beta-1,4-glucosylceramide) + UDP [goid 8489] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642021-S	ILMN_264230	ZFP216_PREDICTED	XM_001079764.1	XM_001079764.1		293960	109463700	XM_001079764.1	Zfp216_predicted	XP_001079764.1	ILMN_1357227	0002480673	S	2080	GGCTGCAGTAGACTTCTTTAGTGGTATCCAGCACCACTTGCAGAGGGCTG				1q51	PREDICTED: Rattus norvegicus zinc finger protein 216 (predicted) (Zfp216_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649338-S	ILMN_278298	RGD1310313_PREDICTED	XM_001059237.1	XM_001059237.1		298308	109476870	XM_001059237.1	RGD1310313_predicted	XP_001059237.1	ILMN_1359639	0003440538	S	1596	GCTGAAAACTTAGGATGTGATGCTTCTGCCCGGAAATGGCCTCCAAACTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110001M20 (predicted) (RGD1310313_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650711	ILMN_265057	NKX2-9_PREDICTED	XM_001079326.1	XM_001079326.1		299061	109479412	XM_001079326.1	Nkx2-9_predicted	XP_001079326.1	ILMN_1650111	0001740746	S	482	TGCAAGGTTACACTGCCTTCGGACCGGGCTCAGCATTAGGCCTCTTCCCT				6q23	PREDICTED: Rattus norvegicus NK2 transcription factor related, locus 9 (Drosophila) (predicted) (Nkx2-9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948443-S	ILMN_276058	AURKAIP1	NM_001004237.1	NM_001004237.1		298687	51948443	NM_001004237.1	Aurkaip1	NP_001004237.1	ILMN_1352882	0000360132	S	403	TAGCCAGGGGGAGGAGGAAGCCAAACAGGGAGACAGGGAAGTCTGGGATG	5	+	172685389-172685438	5q36	Rattus norvegicus aurora kinase A interacting protein 1 (Aurkaip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45862] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	Akip; MGC94202	Akip; MGC94202
Rattus norvegicus	RefSeq	GI_62661000	ILMN_297369	ANXA7	NM_130416.1	NM_130416.1		155423	18426843	NM_130416.1	Anxa7	NP_569100.1	ILMN_1651088	0000460039	S	2631	GCACATGCACCCAACCACTTGCATGCCTATTTTCCTGAGGAGGCCAGGAG	15	+	4076821-4076870	15p16	Rattus norvegicus annexin A7 (Anxa7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence ISS]	The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IDA]; The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part [goid 7599] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment [goid 9651] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of water within a cell [goid 9992] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IDA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_61097936-A	ILMN_301560	VEGFB	NM_053549.1	NM_053549.1		89811	61097936	NM_053549.1	Vegfb	NP_446001.1	ILMN_1376698	0000780446	S	1375	GATCTCAACAAACAGCAAGAATAAAGAGGGGCCGGGTGTGTAGCTCAGCC	1	-	209658010-209658059	1q43	Rattus norvegicus vascular endothelial growth factor B (Vegfb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655967-S	ILMN_266022	RGD1560437_PREDICTED	XR_008389.1	XR_008389.1		288039	109490521	XR_008389.1	RGD1560437_predicted		ILMN_1364552	0005080286	S	978	GGCTTACATGGCCTCCAAGGAGTAAGAAACTGTGGACTACCCACCCCAGC				10q12	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560437_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650914-I	ILMN_60710	RDH11_PREDICTED	XM_576057.1	XM_576057.1		362757	62650914	XM_576057.1	Rdh11_predicted	XP_576057.1	ILMN_1375818	0002900603	S	351	GCTGACGTTTCACCCCTCACAGTGATAGTCATGGTTCTTCCCAGACTTGG				6q24	PREDICTED: Rattus norvegicus retinol dehydrogenase 11 (predicted) (Rdh11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242315-S	ILMN_286067	ADAMTS1	NM_024400.1	NM_024400.1		79252	13242315	NM_024400.1	Adamts1	NP_077376.1	ILMN_1367103	0007000075	S	4751	TCCTGCCACAACCCTGTGACAGTGAATGCTTTGTAGGAATGAGAGCAGCC	11	-	25433838-25433887	11q11	Rattus norvegicus a disintegrin-like and metallopeptidse (reprolysin type) with thrombospondin type 1 motif, 1 (Adamts1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664838-S	ILMN_266841	AMFR_PREDICTED	XM_001062954.1	XM_001062954.1		361367	109508430	XM_001062954.1	Amfr_predicted	XP_001062954.1	ILMN_1353982	0001010364	S	1642	CGCCTAGAGGAGACCTTGGACTTCAGCGAGGTAGAGCTAGAGCCCGTAGA				19p12	PREDICTED: Rattus norvegicus autocrine motility factor receptor (predicted) (Amfr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661010-S	ILMN_51566	VCL_PREDICTED	XM_223781.3	XM_223781.3		305679	62661010	XM_223781.3	Vcl_predicted	XP_223781.3	ILMN_1356762	0001780576	S	4236	ACCAACATCAGTGACGAGGAGTCTGAGCAGCCAGCGGAGATGGAGGGGGT				15p16	PREDICTED: Rattus norvegicus vinculin (predicted) (Vcl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50300482-S	ILMN_298024	SLCO4C1	NM_001002024.1	NM_001002024.1		432363	50300482	NM_001002024.1	Slco4c1	NP_001002024.1	ILMN_1369388	0003190092	S	1843	CTGGGAGTGCAGTTCATGCTTCTTCGGTTGTTAGGCACGATACCTGGGCC	9	-	96046087-96046103:96047492-96047524	9q36	Rattus norvegicus solute carrier organic anion transporter family, member 4C1 (Slco4c1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Oatp-M1; Slc21A20; Oatp4c1; Oatp-H	Oatp-M1; Slc21A20; Oatp4c1; Oatp-H
Rattus norvegicus	RefSeq	GI_13786173-S	ILMN_275078	TIMELESS	NM_031340.1	NM_031340.1		83508	13786173	NM_031340.1	Timeless	NP_112630.1	ILMN_1370013	0004210215	S	3937	CTCAGTGGTTGAACCCAGGACACATGATTGTGCCCGTTACTGCAGTTGGG				7q11	Rattus norvegicus timeless homolog (Drosophila) (Timeless), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence ISS]; The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle [goid 33261] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IMP]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Tim	Tim
Rattus norvegicus	RefSeq	GI_62655895-S	ILMN_60627	WFIKKN1_PREDICTED	XM_343870.3	XM_343870.3		363555	109487914	XM_343870.3	Wfikkn1_predicted	XP_343871.2	ILMN_1368890	0004150035	S	2367	TGGGCCACTGGTCATCATGGGTGAGGTTCGTGAAGGTGTGGCTGTGTTGG	10	-	15141929-15141978	10q12	PREDICTED: Rattus norvegicus WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 (predicted) (Wfikkn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644628-S	ILMN_63365	LOC295015	XM_227132.4	XM_227132.4		295015	109465735	XM_227132.4	LOC295015	XP_227132.4	ILMN_1362744	0001990692	S	2406	CGCGCGGGGAAGCTTTTTACTAATAGAATACCGGACGGTGGGGAACGAGG	2|NW_047644.1	+	300504-300553		PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC295015), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_57113828-S	ILMN_269978	V1RE23	NM_001008962.1	NM_001008962.1		494306	57113828	NM_001008962.1	V1re23	NP_001008962.1	ILMN_1359618	0002120471	S	369	AGTTCCAAAGCATGTCAACCTCTCTATTTTCCTTTGCTGGGCCCTGTGTT	1	-	58063996-58064045	1q12	Rattus norvegicus vomeronasal 1 receptor, E23 (V1re23), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646925-S	ILMN_291295	LOC500054	NM_001024322.1	NM_001024322.1		500054	66730277	NM_001024322.1	LOC500054	NP_001019493.1	ILMN_1373773	0000580711	S	2493	TGAACAGATGCCGTCTCACCAAGCGGGGATATACTAAAAGGAGGGTTTCC	4	-	52233569-52233618	4q22	Rattus norvegicus similar to POT1-like telomere end-binding protein (LOC500054), mRNA.	The terminal region of a linear chromosome in the nucleus that includes the telomeric DNA repeats and associated proteins [goid 784] [evidence IEA]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978820-S	ILMN_63886	F2R	NM_012950.2	NM_012950.2		25439	82617582	NM_012950.2	F2r	NP_037082.2	ILMN_1372371	0006860041	S	3331	CTGTTACCACTGCACTTGTGAACTTTCGTGTCATTGTTTTGTGTTCACCC				2q12	Rattus norvegicus coagulation factor II (thrombin) receptor (F2r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin [goid 31094] [evidence IEA]; A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin [goid 31094] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin [goid 31094] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IMP]; The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared during or following an inflammatory response [goid 2248] [evidence IEA]; The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared during or following an inflammatory response [goid 2248] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IMP]; The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 7260] [evidence IEA]; The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 7260] [evidence ISS]; The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence IEA]; The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence ISS]; The biological process by which a synapse between a motor neuron and a muscle is initially formed [goid 7529] [evidence IDA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of blood coagulation [goid 30194] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of blood coagulation [goid 30194] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of blood coagulation [goid 30194] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that modulates the frequency, rate, or extent of interleukin-1 beta production [goid 32651] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IEA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IMP]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence IMP]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IDA]; The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared during or following an inflammatory response [goid 2248] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 7260] [evidence IEA]; The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of blood coagulation [goid 30194] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IEA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Combining with thrombin to initiate a change in cell activity [goid 15057] [evidence TAS]; Combining with thrombin to initiate a change in cell activity [goid 15057] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Combining with thrombin to initiate a change in cell activity [goid 15057] [evidence IEA]	TRGPC; MGC93622; Par1	TRGPC; MGC93622; Par1
Rattus norvegicus	RefSeq	GI_16758625-S	ILMN_295460	TM4SF4	NM_053785.1	NM_053785.1		116467	16758625	NM_053785.1	Tm4sf4	NP_446237.1	ILMN_1366742	0002060278	S	1009	ACTGCACACATGGGCTGCTAACTCCTGTCCGGTTGGATCCTCTCTGGCAG	2	+	146683515-146683564	2q31	Rattus norvegicus transmembrane 4 L six family member 4 (Tm4sf4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]		Lrtm4	Lrtm4
Rattus norvegicus	RefSeq	GI_62657494	ILMN_302167	SECTM1A	NM_001013043.1	NM_001013043.1		287885	61556779	NM_001013043.1	Sectm1a	NP_001013061.1	ILMN_1650465	0002230278	S	1159	GAGGTCAGGGTCTCTCCACTACCCAAAGATCTCCAGCGTAAGCCTGATGC	10	-	110284143-110284192	10q32.3	Rattus norvegicus secreted and transmembrane 1A (Sectm1a), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]	Sectm1	Sectm1
Rattus norvegicus	RefSeq	GI_62641324-S	ILMN_280844	RGD1561284_PREDICTED	XM_001080255.1	XM_001080255.1		499267	109462920	XM_001080255.1	RGD1561284_predicted	XP_001080255.1	ILMN_1359764	0001170403	S	4059	GAACACACACCAAAGAAGGGGGTTGGTTCAGGGGGTGGGCAACACAGGCA					PREDICTED: Rattus norvegicus similar to CDNA sequence BC006909 (predicted) (RGD1561284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645165-S	ILMN_282465	RGD1565122_PREDICTED	XM_001056795.1	XM_001056795.1		295654	109470007	XM_001056795.1	RGD1565122_predicted	XP_001056795.1	ILMN_1351195	0006020156	S	3704	GACATGGCGGAAGAGCTGCTGAAACGGTGTCTGTGCCATAACCGGTCCTG				3q21	PREDICTED: Rattus norvegicus similar to tetratricopeptide repeat domain 21B (predicted) (RGD1565122_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655474-S	ILMN_49286	RGD1308143_PREDICTED	XM_237468.3	XM_237468.3		316685	62655474	XM_237468.3	RGD1308143_predicted	XP_237468.3	ILMN_1360866	0006940731	S	2134	CATACACACCTACGAAGATCCTCCCAACACCGCCTGCTGCTGTAAAGAGC					PREDICTED: Rattus norvegicus similar to D330021B20 protein (predicted) (RGD1308143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659078-S	ILMN_64914	POLE_MAPPED	XM_222255.4	XM_222255.4		304573	109496178	XM_222255.4	Pole_mapped	XP_222255.3	ILMN_1366864	0002480131	S	6702	AGTGCCGTGGTATGAAAGAGACCCATATGCCTGTGTACTGCGGCTGCGCA	12	-	46491927-46491976	12q16	PREDICTED: Rattus norvegicus polymerase (DNA directed), epsilon (mapped) (Pole_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62661687-S	ILMN_55962	TNFRSF10B_PREDICTED	XM_344431.3	XM_344431.3		364420	109501850	XM_344431.3	Tnfrsf10b_predicted	XP_344432.3	ILMN_1360982	0000770725	S	1119	CCTGCTAGGTGCCTTGGAAGCGGTGGGAGAAAGATGTGCCCTGGAGGAAA	15	+	50162092-50162141	15p11	PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 10b (predicted) (Tnfrsf10b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663879-S	ILMN_294960	RGD1563247_PREDICTED	XM_344630.2	XM_344630.2		364781	62663879	XM_344630.2	RGD1563247_predicted	XP_344631.2	ILMN_1372424	0003940048	S	28	GGTTACACTGATGCTGACCCAGGTAGAGGTTACACTGATGCTGACCCAGG	17	+	80130885-80130934	17q12.3	PREDICTED: Rattus norvegicus similar to At1g76010/T4O12_22 (predicted) (RGD1563247_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662950-S	ILMN_59230	TMCO3_PREDICTED	XM_225016.4	XM_225016.4		306607	109503574	XM_225016.4	Tmco3_predicted	XP_225016.4	ILMN_1369927	0002630181	S	1924	AGGGCTTCATGTGTTCCCCACCTTTGTGATCTACGAGCTGACCGTGCTGG	16	-	81075295-81075343:81079554-81079554	16q12.5	PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains 3 (predicted) (Tmco3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656048-S	ILMN_277532	SEC24A_PREDICTED	XM_001073105.1	XM_001073105.1		287275	109490668	XM_001073105.1	Sec24a_predicted	XP_001073105.1	ILMN_1349400	0004210195	S	3707	ACAAGTGACGAGTCGTGGGCTGCTGAGGAACCACTTTCAGAGTTCCTGGG				10q22	PREDICTED: Rattus norvegicus SEC24 related gene family, member A (S. cerevisiae) (predicted) (Sec24a_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.27185	ILMN_160599	RN.27185	Rn.27185		Rn.27185		41108937	CK595869			ILMN_1530279	0002030672	S	552	AAAGGAGAATTGGGTCAGGAGAGGATGATGCCTTGATTTAGGAGAACAGA					AGENCOURT_17840719 NIH_MGC_238 Rattus norvegicus cDNA clone IMAGE:7133155 5', mRNA					
Rattus norvegicus	RefSeq	GI_62642481-S	ILMN_66489	LOC365484	XM_574689.1	XM_574689.1		365484	62642481	XM_574689.1	LOC365484	XP_574689.1	ILMN_1373406	0002060064	S	973	AGTCACACAGGCCACAAAACCCAAGGGGAGATATGCTACTGGACCTGAGG				1q55	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E430018M08 (LOC365484), mRNA.					
Rattus norvegicus	RefSeq	GI_14010878	ILMN_286442	PSMD1	NM_031978.1	NM_031978.1		83806	14010878	NM_031978.1	Psmd1	NP_114184.1	ILMN_1650835	0001190619	S	2788	CACCAGCGAAGACATTGAGGAACTTGTGGAACCCGTGGCAGCACATGGCC	9	+	84880501-84880550	9q35	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (Psmd1), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the activity of an enzyme [goid 30234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660091	ILMN_68831	LOC364096	XM_344206.2	XM_344206.2		364096	62660091	XM_344206.2	LOC364096	XP_344207.2	ILMN_1650619	0005890091	S	75	GTACCAGCGAGGGTCTGGTTGCATAAGAGTCGGACAGATTGAAGGCACTG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC364096), mRNA.					
Rattus norvegicus	RefSeq	GI_62649443-S	ILMN_294051	LOC690021	XM_001072959.1	XM_001072959.1		690021	109475335	XM_001072959.1	LOC690021	XP_001072959.1	ILMN_1352518	0006650398	S	1104	TGCCTTACACCACCATGTGCATCAAGGAGGCCCTGAGGCTCTACTCACCT	5	-	135767987-135768036	5q36	PREDICTED: Rattus norvegicus similar to Cytochrome P450 4A2 precursor (CYPIVA2) (Lauric acid omega-hydroxylase) (P450-LA-omega 2) (P450 K-5) (P-450 K-2) (LOC690021), mRNA.					
Rattus norvegicus	Unigene	Rn.16542	ILMN_160989	RN.16542	Rn.16542		Rn.16542		51980511	BC081957			ILMN_1530364	0007100524	S	2961	GCTAGACCATTGTTACTTGAGAGCCTGTCTCAGAAAAACCAAATAATAAA					Rattus norvegicus WD repeat domain 23 (predicted), mRNA (cDNA clone					
Rattus norvegicus	RefSeq	GI_62641741-S	ILMN_292162	CTSW	NM_001024242.1	NM_001024242.1		293676	66730452	NM_001024242.1	Ctsw	NP_001019413.1	ILMN_1359033	0004210148	S	1079	GGACCGACCAGTTAAGAAAGCCCCAGTCTCTTGTCCACCTTGAGGCCAGC	1	-	208108748-208108755:208108756-208108797	1q43	Rattus norvegicus cathepsin W (Ctsw), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]	MGC112764	MGC112764
Rattus norvegicus	RefSeq	GI_62667049-S	ILMN_268548	SNX12_PREDICTED	XM_001069787.1	XM_001069787.1		363478	109512067	XM_001069787.1	Snx12_predicted	XP_001069787.1	ILMN_1350162	0001090450	S	802	CACAGTCCAGCTTTGACACGACTGGGTCTGACGTAGGAGGTGCAGGATCG				Xq31	PREDICTED: Rattus norvegicus sorting nexin 12 (predicted) (Snx12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758385-I	ILMN_300287	NNAT	NM_053601.1	NM_053601.1		94270	16758385	NM_053601.1	Nnat	NP_446053.1	ILMN_1376130	0002350047	I	138	GGGTAGGATTCGCTTTTCGAAATCCTCCAGGGACACAGCCCATTGCGAGA	3	+	148270489-148270538	3q42	Rattus norvegicus neuronatin (Nnat), transcript variant 1, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]		Peg5; MGC156562	Peg5; MGC156562
Rattus norvegicus	RefSeq	GI_62661801-S	ILMN_61906	RGD1305077_PREDICTED	XM_224451.4	XM_224451.4		306104	109501800	XM_224451.4	RGD1305077_predicted	XP_224451.3	ILMN_1371349	0004120451	S	2196	AAAGTCAGCCCTGCTGCAGACGAAGAACCAGATGGCACTGGATTTGGAGC	15	+	83028035-83028084	15q21	PREDICTED: Rattus norvegicus similar to Progesterone-induced blocking factor 1 (predicted) (RGD1305077_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652133-S	ILMN_53844	CPM_PREDICTED	XM_235168.3	XM_235168.3		314855	62652133	XM_235168.3	Cpm_predicted	XP_235168.3	ILMN_1373155	0000110164	S	1384	CCGTGACCCCGTGGAATCGGGGATCGGTTACCCCAGGTTATGGCAACTCT				7q22	PREDICTED: Rattus norvegicus carboxypeptidase M (predicted) (Cpm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090227-S	ILMN_275583	ZFP219	NM_001007681.1	NM_001007681.1		305848	56090227	NM_001007681.1	Zfp219	NP_001007682.1	ILMN_1353885	0006660181	S	2539	GTCACAGTGCCTTAGACGTGGCAGAGGTGAGGGTCAAAGAACGGGGTCCT	15	-	27434357-27434406	15p14	Rattus norvegicus zinc finger protein 219 (Zfp219), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Znf219; MGC94294	Znf219; MGC94294
Rattus norvegicus	RefSeq	GI_62667068-S	ILMN_64672	LOC501591	XM_576994.1	XM_576994.1		501591	62667068	XM_576994.1	LOC501591	XP_576994.1	ILMN_1360175	0005080446	S	294	GGTTTTACAAGAAAACCACCTAATGCATGTGAGGGAGTGGGCCTTGTGAC					PREDICTED: Rattus norvegicus similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) (LOC501591), mRNA.					
Rattus norvegicus	RefSeq	GI_61835220-S	ILMN_50651	PCK1	NM_198780.3	NM_198780.3		362282	61835220	NM_198780.3	Pck1	NP_942075.1	ILMN_1363828	0003520048	S	2220	GGGGGGTTTGGTTCCACTTCGAGGTCACTCAGGAATCCAGTTCTTCACGT	3	+	164017944-164017993	3q42	Rattus norvegicus phosphoenolpyruvate carboxykinase 1, cytosolic (Pck1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence TAS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle [goid 6107] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IDA]; The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate [goid 46327] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate [goid 46327] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 [goid 4611] [evidence IDA]; Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 [goid 4611] [evidence ISS]; Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2 [goid 4613] [evidence IDA]; Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2 [goid 4613] [evidence ISS]; Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2 [goid 4613] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate [goid 17076] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence ISS]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IEA]	GTP; Pepck; MGC93820; RATPEPCK; PEPCK-C; PCK	GTP; Pepck; MGC93820; RATPEPCK; PEPCK-C; PCK
Rattus norvegicus	RefSeq	GI_62655010-S	ILMN_68054	ERCC5_MAPPED	XM_217387.4	XM_217387.4		301382	109486022	XM_217387.4	Ercc5_mapped	XP_217387.4	ILMN_1355376	0002100541	S	3103	AGCTCCAGTGAGGATGGCGAGGACAAAGCCAAGGCTGTCTTAGTGACTGC	9	+	43292906-43292955	9q22	PREDICTED: Rattus norvegicus excision repair cross-complementing rodent repair deficiency, complementation group 5 (mapped) (Ercc5_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62642782-S	ILMN_60966	RGD1566212_PREDICTED	XM_574837.2	XM_574837.2		499512	109464268	XM_574837.2	RGD1566212_predicted	XP_574837.1	ILMN_1372363	0000360494	S	566	GAAGTCTGGGGAAAGTGCTTGGCTCAGGGTTTGACAGAGAGAAGAAGACA	2	+	25951806-25951855	2q12	PREDICTED: Rattus norvegicus similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 2 (predicted) (RGD1566212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981293-S	ILMN_302906	NTRK2	NM_012731.1	NM_012731.1		25054	6981293	NM_012731.1	Ntrk2	NP_036863.1	ILMN_1366426	0006550315	S	4663	ACATTCAGTGTGCTCAGGTCAAGTCTCTCGCTCGGGGCTCTGTTTCGGGG	17	-	11494500-11494549	17p14	Rattus norvegicus neurotrophic tyrosine kinase, receptor, type 2 (Ntrk2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence ISS]; A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix [goid 48786] [evidence IDA]; A synapse in which an action potential in the presynaptic cell increases the probability of an action potential occurring in the postsynaptic cell [goid 60076] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11784714] [evidence EXP]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11248116] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 9560161] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 11007890] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 7970708] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 15167895] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 10908605] [evidence EXP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; The regulated release of glutamate by a cell or group of cells. The glutamate is the most abundant excitatory neurotransmitter in the nervous system [goid 14047] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; The series of molecular signals generated as a consequence of a brain-derived neurotrophic factor receptor binding to one of its physiological ligands [goid 31547] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence ISS]; Development of a rod cell, one of the sensory cells in the eye that reacts to the presence of light. Rod cells contain the photopigment rhodopsin or porphyropsin and are responsible for vision in dim light [goid 46548] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence IDA]; Any process that modulates the frequency, rate or extent of dendrite development [goid 50773] [evidence IMP]; Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51968] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IMP]; Combining with neurotrophin, any of a family of growth factors that block apoptosis in neurons and thus promote nerve growth, to initiate a change in cell activity [goid 5030] [evidence IMP]; Combining with neurotrophin, any of a family of growth factors that block apoptosis in neurons and thus promote nerve growth, to initiate a change in cell activity [goid 5030] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with brain-derived neurotrophic factor [goid 48403] [evidence IDA]; Interacting selectively with brain-derived neurotrophic factor [goid 48403] [evidence IMP]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	TRKB1; RATTRKB1; Tkrb	TRKB1; RATTRKB1; Tkrb
Rattus norvegicus	RefSeq	GI_62643318-S	ILMN_269129	ACTL6A	NM_001039033.1	NM_001039033.1		361925	84781661	NM_001039033.1	Actl6a	NP_001034122.1	ILMN_1355194	0000610154	S	1214	GATTGCAAACAACACGACGGTGGAGCGGAGGTTCAGCTCGTGGATCGGCG	2	+	118935239-118935288	2q25	Rattus norvegicus actin-like 6A (Actl6a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any complex that mediates dynamic changes in eukaryotic chromatin [goid 16585] [evidence ISS]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence ISS]	Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	RGD1307747; MGC112664	RGD1307747; MGC112664
Rattus norvegicus	RefSeq	GI_62667404	ILMN_60754	LOC317323	XM_228678.3	XM_228678.3		317323	62667404	XM_228678.3	LOC317323	XP_228678.3	ILMN_1650887	0004150129	S	1	CAGCAAAAAAGTGTTCTGAAAAGTGGCGGACCATCTCAAAGAAGGAAAAA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC317323), mRNA.					
Rattus norvegicus	RefSeq	GI_25742789-S	ILMN_292786	SCNN1G	NM_017046.1	NM_017046.1		24768	25742789	NM_017046.1	Scnn1g	NP_058742.1	ILMN_2040681	0003190669	S	2556	GGGGATCATGTTTGGAGAGGGCACAGTAGAGAGAAGCCAAGGGGTGTGGT	1	+	180589125-180589174	1q36	Rattus norvegicus sodium channel, nonvoltage-gated 1 gamma (Scnn1g), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IMP]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15280] [evidence IMP];  [goid 15280] [evidence IEA];  [goid 15280] [evidence IDA];  [goid 15280] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence IPI]	ENaC	ENaC
Rattus norvegicus	RefSeq	GI_57528200-S	ILMN_293005	YARS2	NM_001009627.1	NM_001009627.1		287924	57528200	NM_001009627.1	Yars2	NP_001009627.1	ILMN_1360282	0004850010	S	1239	TGCCATTCCTGATGGTCCCCGAGGGTATCGGATGATCACAGAAGGTGGAG	11	+	86612647-86612670:86614498-86614523	11q23	Rattus norvegicus tyrosyl-tRNA synthetase 2 (mitochondrial) (Yars2), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6437] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + L-tyrosyl-tRNA(Tyr) [goid 4831] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	RGD1311696; CGI-04	RGD1311696; CGI-04
Rattus norvegicus	RefSeq	GI_6981669-S	ILMN_263110	TON	NM_012677.1	NM_012677.1		24841	6981669	NM_012677.1	Ton	NP_036809.1	ILMN_1362236	0004050471	S	612	GTCATGCTGTGTGCAGGAGAGATGGAAGGAGGAAAAGACACTTGTGCGGG	1	-	94471889-94471891:94472249-94472295	1q22	Rattus norvegicus tonin (Ton), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	KLK2; rGK-2; Klk1c2	KLK2; rGK-2; Klk1c2
Rattus norvegicus	RefSeq	GI_47576778-S	ILMN_299088	OLR832	NM_001000898.1	NM_001000898.1		405208	47576778	NM_001000898.1	Olr832	NP_001000898.1	ILMN_1360880	0001690692	S	871	CGCAACAAGCAGGTCCACCAGGCTCTGAGGGAGACTCTTTGCAGAAAAAA	4	-	152925436-152925485	4q42	Rattus norvegicus olfactory receptor 832 (Olr832), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr832	Olr832
Rattus norvegicus	RefSeq	GI_62638400-S	ILMN_284703	RGD1563264_PREDICTED	XR_007694.1	XR_007694.1		292195	109460606	XR_007694.1	RGD1563264_predicted		ILMN_1370572	0004570500	S	584	GGAAAGGTCAGGCTGGGGCACCTGGTCCATAGGAAGACATGTACCACTGT				1p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1563264_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645443	ILMN_273281	RGD1560961_PREDICTED	XM_001079189.1	XM_001079189.1		311241	109470375	XM_001079189.1	RGD1560961_predicted	XP_001079189.1	ILMN_1650152	0006660735	S	1794	GCTGGCAGAAGGTTGACATTGGGCAACCAATTGCTTTGGGCTCATCAGGG				3q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610038L10 gene (predicted) (RGD1560961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718502-S	ILMN_64965	LOC501405	XM_576817.1	XM_576817.1		501405	62718502	XM_576817.1	LOC501405	XP_576817.1	ILMN_1369238	0002360132	S	729	AAAATTTCATCCATTGCTCTGCAGGAGGAAGGTCCTACTGGTGAGCCAAG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501405), mRNA.					
Rattus norvegicus	RefSeq	GI_62662527-S	ILMN_273036	IL12RB1	XM_001070117.1	XM_001070117.1		171333	109503969	XM_001070117.1	Il12rb1	XP_001070117.1	ILMN_1366586	0004780280	S	2119	CTGGGAGATGTGACCCAGGGAGCCTCGGTACTTGGTGATCTTTGGTGGAT				16p14	PREDICTED: Rattus norvegicus interleukin 12 receptor, beta 1 (Il12rb1), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_34877793-S	ILMN_273036	IL12RB1	XM_001070117.1	XM_001070117.1		171333	109503969	XM_001070117.1	Il12rb1	XP_001070117.1	ILMN_2040265	0003890189	S	1682	GCGTTGAGGTGCAGATTTCCCGTTTATCCATCGTTTTCGCGTCTCTGGGA				16p14	PREDICTED: Rattus norvegicus interleukin 12 receptor, beta 1 (Il12rb1), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62642473-S	ILMN_66016	LOC499371	XM_574686.1	XM_574686.1		499371	62642473	XM_574686.1	LOC499371	XP_574686.1	ILMN_1356796	0001740358	S	8	GGTAAGGATGTGGAGCAAGGGGAACACTCCTCCATTGCTGGTGGGATGCA					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499371), mRNA.					
Rattus norvegicus	RefSeq	GI_62656368-S	ILMN_62692	SPAG7_PREDICTED	XM_220574.4	XM_220574.4		303260	109488410	XM_220574.4	Spag7_predicted	XP_220574.2	ILMN_1368965	0006660722	S	839	CTTTGACCTCCAGCAAAGCAGGGGCATGGAGGGACAAGGCTGCTGCTATC	10	-	57543982-57544031	10q24	PREDICTED: Rattus norvegicus sperm associated antigen 7 (predicted) (Spag7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560047-S	ILMN_286979	RAD50	NM_022246.1	NM_022246.1		64012	11560047	NM_022246.1	Rad50	NP_071582.1	ILMN_1354275	0005130056	S	4103	GGGAGGGATGTGGATTGGGTGAAGGGAACTGTGTATGGCAGGTTTGAGAG	10	-	39113023-39113072	10q22	Rattus norvegicus RAD50 homolog (S. cerevisiae) (Rad50), mRNA.	The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IDA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Intracellular foci at which aggregated proteins have been sequestered [goid 16234] [evidence IDA]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence TAS]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence ISS]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence ISS]; The nucleus of either the ovum or the spermatozoon following fertilization. Thus, in the fertilized ovum, there are two pronuclei, one originating from the ovum, the other from the spermatozoon that brought about fertilization; they approach each other, but do not fuse until just before the first cleavage, when each pronucleus loses its membrane to release its contents [goid 45120] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA recombination during mitosis [goid 19] [evidence ISS]; A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence TAS]; Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence TAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence TAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence ISS]; The maintenace of proper telomeric length by the addition of telomeric repeats by telomerase [goid 7004] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity [goid 7131] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Catalysis of the hydrolysis of ester linkages within a single-stranded deoxyribonucleic acid molecule by creating internal breaks [goid 14] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end [goid 8408] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end [goid 8408] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659130-S	ILMN_48129	LOC498203	XM_573421.1	XM_573421.1		498203	62659130	XM_573421.1	LOC498203	XP_573421.1	ILMN_1348871	0004150333	S	768	GCCTTATGTCTGTGAAGGCTCTCAGGGATGTAGGCATAAGGGCAGGTTCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498203), mRNA.					
Rattus norvegicus	RefSeq	GI_62657228-S	ILMN_295973	LOC685766	XM_001081538.1	XM_001081538.1		685766	109492019	XM_001081538.1	LOC685766	XP_001081538.1	ILMN_1366752	0002940427	S	1225	TCAGGTTCTGAAAACCAGCCAGAAGCCTCAGTTCAGCCTACAGTGCTCCC				10q32.1	PREDICTED: Rattus norvegicus proline-rich protein (LOC685766), mRNA.	A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]		Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663337-S	ILMN_292874	KIF13A_PREDICTED	XM_001058501.1	XM_001058501.1		308173	109505591	XM_001058501.1	Kif13a_predicted	XP_001058501.1	ILMN_1370672	0000670139	S	5904	CTGCCCAGGAGAGGTGACGATAGAACACACTACGAACATTTTGGAGGACC				17p13	PREDICTED: Rattus norvegicus kinesin family member 13A (predicted) (Kif13a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638375-S	ILMN_69139	RGD1306962_PREDICTED	XM_220112.4	XM_220112.4		309570	109457641	XM_220112.4	RGD1306962_predicted	XP_220112.4	ILMN_1365510	0004810427	S	1685	GGACTCTGCTAAGTGGTGTTGCGATGGCCTTGTTTTATCTCTGGGAGGAC	1	-	22202820-22202856:22202949-22202961	1p12	PREDICTED: Rattus norvegicus similar to dJ55C23.6 gene product (predicted) (RGD1306962_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655691-S	ILMN_282196	PPL_PREDICTED	XM_001079075.1	XM_001079075.1		302934	109489709	XM_001079075.1	Ppl_predicted	XP_001079075.1	ILMN_1370926	0005890132	S	5275	TCTGTAGCCGTCAAGAGGGAGCAGAGGGAGAACCACCTGAGGCGCTCCAT				10q12	PREDICTED: Rattus norvegicus periplakin (predicted) (Ppl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34859707-S	ILMN_293543	RGD1563867_PREDICTED	XR_008905.1	XR_008905.1		293291	109462589	XR_008905.1	RGD1563867_predicted		ILMN_1363201	0002320619	S	159	AGATATGATCCGGGAGGTGTGCAGCTTCGCGCCCTACGAGCAGTGCGTCA				1q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (predicted) (RGD1563867_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28173569-S	ILMN_278811	HDC	NM_017016.1	NM_017016.1		24443	28173569	NM_017016.1	Hdc	NP_058712.1	ILMN_1352199	0005290239	S	2019	CTGCTGCCCTCTGCAGGCCATGGTGTAGGTGACGGGAGTCTTCAATCAGA	3	-	114119596-114119618:114119619-114119645	3q36	Rattus norvegicus histidine decarboxylase (Hdc), mRNA.		The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents, and compounds derived from amino acids, as carried out by individual cells [goid 6519] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6548] [evidence ISS]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 42423] [evidence IEA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents, and compounds derived from amino acids, as carried out by individual cells [goid 6519] [evidence IEA]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]	Catalysis of the reaction: L-histidine = histamine + CO2 [goid 4398] [evidence IEA]; Catalysis of the reaction: L-histidine = histamine + CO2 [goid 4398] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound [goid 16831] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	MGC156577	MGC156577
Rattus norvegicus	RefSeq	GI_62638465	ILMN_50772	LOC499008	XM_574301.1	XM_574301.1		499008	62638465	XM_574301.1	LOC499008	XP_574301.1	ILMN_1649713	0000940750	S	321	GACTTCGAGAGATTCATTATTTGGGAGTGACGTCTTAAGAAAGGAAACCC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC499008), mRNA.					
Rattus norvegicus	RefSeq	GI_20302078-S	ILMN_277263	XTP3TPA	NM_138892.1	NM_138892.1		192252	20302078	NM_138892.1	Xtp3tpa	NP_620247.1	ILMN_1360240	0004280110	S	538	CTGAGTTGGGAAACCAGGCTTCCACCTAGAAAAACAGTGCTAGTCTGGTC	1	-	186520014-186520035:186520036-186520063	1q36	Rattus norvegicus XTP3-transactivated protein A (Xtp3tpa), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	RS21-C6	RS21-C6
Rattus norvegicus	RefSeq	GI_34860517-S	ILMN_161825	LOC367028	XM_345903.1	XM_345903.1			34860517	XM_345903.1	LOC367028		ILMN_2039328	0007320180	S	45	GCCCCGAAACTCAGCAAGAAGCCAGCAGCATAAAAGTGAGTCCATCATCT					Rattus norvegicus similar to SH3-domain binding protein 1 (LOC367028), mRNA.					
Rattus norvegicus	RefSeq	GI_62657618-S	ILMN_65082	RGD1304621_PREDICTED	XM_221669.4	XM_221669.4		304104	109492917	XM_221669.4	RGD1304621_predicted	XP_221669.4	ILMN_1374177	0000780397	S	6810	GGCCCAGCAGCCAGACACCTTCCTTGCTCACATCCAAACGGTCTGTGAAG	11	-	30733339-30733388	11q11	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0539 (predicted) (RGD1304621_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027419-S	ILMN_292493	GFRA4	NM_023967.1	NM_023967.1		66023	13027419	NM_023967.1	Gfra4	NP_076457.1	ILMN_1349426	0005860114	S	723	GGATGGTGCCATACAAGCCTTTGACAGCTCGCAACCATCAGTTCTGCAGG	3	-	118712571-118712619:118713361-118713361	3q36	Rattus norvegicus GDNF family receptor alpha 4 (Gfra4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence ISS]	 [goid 16167] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659841-S	ILMN_51374	LOC497692	XM_579641.1	XM_579641.1		497692	62659841	XM_579641.1	LOC497692	XP_579641.1	ILMN_1364065	0003290519	S	1584	TGAAGACCATCCCTACTTCGACGGGGAAGAGTCTGCTTGTGTCTGGATGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_134453 (LOC497692), mRNA.					
Rattus norvegicus	RefSeq	GI_47577656-S	ILMN_269876	OLR556	NM_001000929.1	NM_001000929.1		405249	47577656	NM_001000929.1	Olr556	NP_001000929.1	ILMN_1373130	0005420066	S	408	AGCTGCCTCCTGGATCAGTGGGATTCCAGTAGAAATTGGGCAGACCTACC	3	+	70937504-70937553	3q24	Rattus norvegicus olfactory receptor 556 (Olr556), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr556	Olr556
Rattus norvegicus	RefSeq	GI_62642597-S	ILMN_50344	LOC365509	XM_345063.2	XM_345063.2		365509	62642597	XM_345063.2	LOC365509	XP_345064.2	ILMN_1352804	0001780373	S	1346	TGCATCCAATGCTGTGCCTCACTTTCTCCATCAACTGGATACCAATAGGG					PREDICTED: Rattus norvegicus similar to Obox5 protein (LOC365509), mRNA.					
Rattus norvegicus	RefSeq	GI_62641802-S	ILMN_59269	RPS6KA4_PREDICTED	XM_342004.3	XM_342004.3		361715	109459794	XM_342004.3	Rps6ka4_predicted	XP_342005.3	ILMN_1366903	0005270114	S	6514	CACCAAAGACCTGTGTTGGGGATGAGAAAGAGACCATGGGGGCCTCTAGA	1	-	209505564-209505613	1q43	PREDICTED: Rattus norvegicus ribosomal protein S6 kinase, polypeptide 4 (predicted) (Rps6ka4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653360-S	ILMN_48961	TBX20_PREDICTED	XM_235974.3	XM_235974.3		315497	62653360	XM_235974.3	Tbx20_predicted	XP_235974.3	ILMN_1360942	0006550091	S	1485	GCATTAGGCTCTCTCTGACAGATCTGATTCTGGCCCTAGGAAAGTGAGCA				8q13	PREDICTED: Rattus norvegicus T-box 20 (predicted) (Tbx20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659986-S	ILMN_60637	LOC305078	XM_223087.3	XM_223087.3		305078	62659986	XM_223087.3	LOC305078	XP_223087.3	ILMN_1369344	0005700075	S	3133	TTCTCATCCAGCAGGTCCGGGGCTTCCTCACAGCAGCCACTTGGGCTAAG				13q27	PREDICTED: Rattus norvegicus laminin chain (LOC305078), mRNA.					
Rattus norvegicus	RefSeq	GI_62652234-S	ILMN_269266	LOC500846	XM_001054944.1	XM_001054944.1		500846	109482055	XM_001054944.1	LOC500846	XP_001054944.1	ILMN_1355942	0005270692	S	1117	CGACCAGCCCTCTCTGAAATGCTCACGGATCAATACTGCAGAACTCTCCC				7q22	PREDICTED: Rattus norvegicus hypothetical protein LOC500846 (LOC500846), mRNA.					
Rattus norvegicus	RefSeq	GI_13928839-S	ILMN_51505	TXNRD1	NM_031614.1	NM_031614.1		58819	13928839	NM_031614.1	Txnrd1	NP_113802.1	ILMN_1351237	0003850687	S	3006	GCCCCACATCCGTGTGTTGAAGAGGAGAAAGGACCAGGGAACCAAAGGAG				7q13	Rattus norvegicus thioredoxin reductase 1 (Txnrd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm [goid 7369] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IMP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence IEA]; Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence ISS]; Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence IDA]; Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a disulfide group [goid 16654] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	MGC93353	MGC93353
Rattus norvegicus	RefSeq	GI_62656091-I	ILMN_282840	LOC686530	XM_001074611.1	XM_001074611.1		686530	109490739	XM_001074611.1	LOC686530	XP_001074611.1	ILMN_1375363	0001190041	S	1473	AGTCAACAAACTGCAAGCACCTGTTAATAAAGGTCTTAAATAATAAAAAA					PREDICTED: Rattus norvegicus similar to Nuclease sensitive element-binding protein 1 (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... (LOC686530), mRNA.					
Rattus norvegicus	RefSeq	GI_58865401-A	ILMN_268451	POLM	NM_001011912.1	NM_001011912.1		289757	58865401	NM_001011912.1	Polm	NP_001011912.1	ILMN_1376747	0000450091	S	2391	TGGCAGCAGAGTACTAAAACTTAGCCACATCAGGGGGCAGCCACACAGTG	14	-	86492143-86492192	14q21	Rattus norvegicus polymerase (DNA directed), mu (Polm), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins [goid 16446] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) [goid 3912] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649746-S	ILMN_68205	RGD1561205_PREDICTED	XM_575920.2	XM_575920.2		500557	109475574	XM_575920.2	RGD1561205_predicted	XP_575920.2	ILMN_1351783	0005700133	S	897	CGGACTCACTTAGACTTGAACTTGGACCTGACCCTAGCCGGACTTCAGGG	5	-	149695573-149695622	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610200G18 (predicted) (RGD1561205_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638833-S	ILMN_69051	LOC308320	XM_218215.4	XM_218215.4		308320	109457922	XM_218215.4	LOC308320	XP_218215.3	ILMN_1359849	0003990315	S	1610	CACCCCACATTGGTCTCTGGGTGTGGAGATTGTAGGGAGTAGCTTCAGCC	1	+	65180294-65180343	1q12	PREDICTED: Rattus norvegicus similar to 5730403M16Rik protein (LOC308320), mRNA.					
Rattus norvegicus	RefSeq	GI_62651231-S	ILMN_266184	DEGS2	NM_001017457.2	NM_001017457.2		314438	83649765	NM_001017457.2	Degs2	NP_001017457.1	ILMN_1349775	0003850270	S	952	AGTGCTCTGGGACTTCGTGTTTGAGGACTCTCTGGGACCCTACTCCAGGG	6	-	133021879-133021928	6q32	Rattus norvegicus degenerative spermatocyte homolog 2, lipid desaturase (Drosophila) (Degs2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the hydroxylation of sphingolipid long chain bases [goid 170] [evidence ISS]; Catalysis of the hydroxylation of sphingolipid long chain bases [goid 170] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor [goid 16705] [evidence IEA]	MGC112667; RGD1305023	MGC112667; RGD1305023
Rattus norvegicus	RefSeq	GI_62654069-S	ILMN_61802	SNX14_PREDICTED	XM_236461.4	XM_236461.4		315871	109483770	XM_236461.4	Snx14_predicted	XP_236461.3	ILMN_1358019	0000770315	S	2652	GCAGCTCTTTCAGGAGCATCGGCTGGTGTCACTCATAACCCTTCTCAGAG	8	-	93646532-93646532:93649309-93649357	8q31	PREDICTED: Rattus norvegicus sorting nexin 14 (predicted) (Snx14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865725-A	ILMN_295908	SEMA4A	NM_001012078.1	NM_001012078.1		310630	58865725	NM_001012078.1	Sema4a	NP_001012078.1	ILMN_1376428	0000610725	S	2936	GTCTCTGCCCTGGCTAGAATGGTGGGCATAATCTGAGCCTTGTTGTTCAC	2	-	180552517-180552566	2q34	Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A (Sema4a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659775-S	ILMN_68657	LOC360883	XM_341158.2	XM_341158.2		360883	62659775	XM_341158.2	LOC360883	XP_341159.2	ILMN_1355086	0006840035	S	825	ACTGTTCCCTCGGGCATTAAGCAACAGCAGACTTCCAGGATTTCCCAAGG				13q24	PREDICTED: Rattus norvegicus similar to put. type 5 nonmuscle actin (LOC360883), mRNA.					
Rattus norvegicus	RefSeq	GI_62643111-S	ILMN_54699	LOC499559	XM_579980.1	XM_579980.1		499559	62643111	XM_579980.1	LOC499559	XP_579980.1	ILMN_1371009	0001940707	S	372	GAAGGAACGCTTGGGCTCGGGTGATGTTCAGTCACAAGCAGAAAGACCTG					PREDICTED: Rattus norvegicus LOC499559 (LOC499559), mRNA.					
Rattus norvegicus	RefSeq	GI_56961646-S	ILMN_285297	F10	NM_017143.2	NM_017143.2		29243	56961646	NM_017143.2	F10	NP_058839.1	ILMN_1373082	0006900113	S	1410	GCTGGGGAGAGGGGTGTGCAAGGAAAGGGAAATACGGCATCTACACGAAG	16	-	81327347-81327396	16q12.5	Rattus norvegicus coagulation factor X (F10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; A pathway of blood coagulation in which the earlier stages of the cascade are bypassed and the activation of factor X to factor Xa is effected by the combination of factor VIIa + thromboplastin; this second pathway occurs when tissue extracts are present in optimal amounts and is much more rapid than the intrinsic pathway [goid 7598] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC108722	MGC108722
Rattus norvegicus	RefSeq	GI_62664112-S	ILMN_273374	RGD1563861_PREDICTED	XM_001055755.1	XM_001055755.1		498828	109507041	XM_001055755.1	RGD1563861_predicted	XP_001055755.1	ILMN_1360573	0000610563	S	663	CTCTGGACAAGTGGAGAGCCCTGCTTTCCTGAGGCTTCCACAGTGCTCTC				18p12	PREDICTED: Rattus norvegicus similar to ribosomal protein L10 (predicted) (RGD1563861_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34878286-S	ILMN_273374	RGD1563861_PREDICTED	XM_001055755.1	XM_001055755.1		498828	109507041	XM_001055755.1	RGD1563861_predicted	XP_001055755.1	ILMN_1365384	0005690156	S	295	GGATGGCTTTCATATCCAGGTGAGGCTCCGCCCTTTCCATGTCATGCGTA				18p12	PREDICTED: Rattus norvegicus similar to ribosomal protein L10 (predicted) (RGD1563861_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34933447-S	ILMN_262905	LOC682762	XR_009552.1	XR_009552.1		682762	109511567	XR_009552.1	LOC682762		ILMN_1362318	0006110601	S	265	AGCCGTCTGGGCCAAAGGAATAAGGAATGTTCCGTACCACCACATCCGAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC682762), mRNA.					
Rattus norvegicus	RefSeq	GI_13929161-S	ILMN_284594	RBBP7	NM_031816.1	NM_031816.1		83712	13929161	NM_031816.1	Rbbp7	NP_114004.1	ILMN_1359993	0003840184	S	1611	GCGCCAAAAAGGCATTGTATAGTAGGAAATGTAAGTGGGATGGCTTCTGG	X	-	52669964-52670013	Xq21	Rattus norvegicus retinoblastoma binding protein 7 (Rbbp7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13027421-S	ILMN_279212	NPY2R	NM_023968.1	NM_023968.1		66024	13027421	NM_023968.1	Npy2r	NP_076458.1	ILMN_1370905	0000130601	S	855	TGCCTTCCAACTTGCTGTGGACATCGACAGCCATGTCCTGGACCTGAAGG	2	+	150555816-150555865	2q31	Rattus norvegicus neuropeptide Y receptor Y2 (Npy2r), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of peptide secretion [goid 2793] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of a neurophysiological process [goid 31645] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of dopamine [goid 33603] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IMP]; Any process that activates or increases the duration or quality of non-rapid eye movement (NREM) sleep [goid 46010] [evidence IDA]; The regulated release of a substance by a cell, a group of cells, or a tissue [goid 46903] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50805] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence IMP]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence IMP]	Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IDA]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IDA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638850-S	ILMN_292425	RGD1564841_PREDICTED	XM_341777.2	XM_341777.2		361498	62638850	XM_341777.2	RGD1564841_predicted	XP_341778.2	ILMN_1362954	0007050300	S	560	ACACATGCTGTGTAGGTTTCTGTCAGAAGGCATCTCGGGAAGACCTTGCC	1	-	66549843-66549867:66691934-66691958	1q12	PREDICTED: Rattus norvegicus similar to NALP-alpha (predicted) (RGD1564841_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648496-S	ILMN_49349	LOC500381	XM_575739.1	XM_575739.1		500381	62648496	XM_575739.1	LOC500381	XP_575739.1	ILMN_1349668	0006040181	S	894	CCTATCGGAACAGCTGAAGTAGAACACCTGAGCACCATGGGGGCTACAAA				5q11	PREDICTED: Rattus norvegicus similar to mKIAA0974 protein (LOC500381), mRNA.					
Rattus norvegicus	RefSeq	GI_62642356-S	ILMN_60419	SPFH1_PREDICTED	XM_219858.4	XM_219858.4		293939	109460160	XM_219858.4	Spfh1_predicted	XP_219858.4	ILMN_1356408	0003710670	S	1181	CTGAGGAGACTCATGAACCCTCTGGAGAGAGCCCCATCCAAAACAAGGAG	1	+	249194717-249194766	1q54	PREDICTED: Rattus norvegicus SPFH domain family, member 1 (predicted) (Spfh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651067-S	ILMN_68377	RGD1310899_PREDICTED	XM_216747.4	XM_216747.4		299198	109478512	XM_216747.4	RGD1310899_predicted	XP_216747.2	ILMN_1370951	0007050129	S	422	GCCATGCACACACAAAGGAACCTATGCCGATGACTGCCTGGTGCAGAGGG	6	+	109025514-109025563	6q31	PREDICTED: Rattus norvegicus similar to CGI-35 protein (predicted) (RGD1310899_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591933-S	ILMN_301456	CTBS	NM_031023.1	NM_031023.1		81652	13591933	NM_031023.1	Ctbs	NP_112285.1	ILMN_1363445	0002650292	S	1050	TCTAGCCAGAGAGCAAACGGAGGAAATGTGGGGAGCCCTGAGACCACGGC	2	+	244662312-244662361	2q44	Rattus norvegicus chitobiase, di-N-acetyl- (Ctbs), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues [goid 6032] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues [goid 6032] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9313] [evidence IDA]	Catalysis of the random hydrolysis of N-acetyl-beta-D-glucosaminide 1,4-beta-linkages in chitin and chitodextrins [goid 4568] [evidence IDA]; Catalysis of the random hydrolysis of N-acetyl-beta-D-glucosaminide 1,4-beta-linkages in chitin and chitodextrins [goid 4568] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence TAS]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641377	ILMN_60323	LOC499272	XM_579937.1	XM_579937.1		499272	62641377	XM_579937.1	LOC499272	XP_579937.1	ILMN_1650677	0003120167	S	445	CCACTAAGAGCATTCGAGTGGGCAAAGAGAAGCAAGATCGACCCCAGGCC					PREDICTED: Rattus norvegicus LOC499272 (LOC499272), mRNA.					
Rattus norvegicus	RefSeq	GI_30520380-S	ILMN_287038	GPX1	NM_030826.2	NM_030826.2		24404	30520380	NM_030826.2	Gpx1	NP_110453.2	ILMN_1372510	0003390050	S	520	GTTCCAGTGCGCAGATACACCAGGCGCTTTCGCACCATCGACATCGAACC	16|NW_047483.1	+	95454-95503		Rattus norvegicus glutathione peroxidase 1 (Gpx1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence ISS]; A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The progression of an endothelial cell over time, from its formation to the mature structure [goid 1885] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2862] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid hydroperoxide stimulus. Lipid hydroperoxide is the highly reactive primary oxygenated products of polyunsaturated fatty acids [goid 6982] [evidence IMP]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The activation, by oxidative stress, of any of the steps required for cell death by apoptosis [goid 8631] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism [goid 9609] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV [goid 9650] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion [goid 10269] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse [goid 14902] [evidence ISS]; The modification of a protein amino acid by oxidation [goid 18158] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroperoxide stimulus. Hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH [goid 33194] [evidence ISS]; Any process that modulates the frequency, rate or extent of mammary gland epithelial cell proliferation [goid 33599] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence [goid 40029] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage [goid 43403] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 51450] [evidence ISS]; An interaction between two organisms living together in more or less intimate association. The term symbiont is used for the smaller (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism [goid 51702] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the protein kinase B signaling cascade, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B [goid 51897] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The multicellular organismal process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 60047] [evidence ISS]; The multicellular organismal process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 60047] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury [goid 60055] [evidence ISS]	Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence TAS]; Interacting selectively with selenium (Se) [goid 8430] [evidence IMP];  [goid 8539] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]; Catalysis of the reaction: a lipid hydroperoxide + 2 reduced glutathione = 2 H2O + lipid + 2 oxidized glutathione [goid 47066] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_49225970-S	ILMN_283134	SRD5A2	NM_022711.3	NM_022711.3		64677	49225970	NM_022711.3	Srd5a2	NP_073202.1	ILMN_1349107	0005360433	S	1429	GCAGGAGGAAGGGGAGCATCAGGAGAAATGTAGGAGAGAAGGGGAGGAGG	6	+	21489083-21489132	6q13	Rattus norvegicus steroid 5-alpha-reductase 2 (Srd5a2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IDA]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6702] [evidence IEA]; The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6702] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 6706] [evidence IDA]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence TAS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence IEA]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence TAS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]	Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor [goid 3865] [evidence IEA]; Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor [goid 3865] [evidence IDA]; Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor [goid 3865] [evidence ISS]; Catalysis of the removal of a C-5 double bond in the B ring of a sterol [goid 9917] [evidence IEA]; Catalysis of the removal of a C-5 double bond in the B ring of a sterol [goid 9917] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_21687013-S	ILMN_299235	CACNG6	NM_080694.1	NM_080694.1		140727	21687013	NM_080694.1	Cacng6	NP_542425.1	ILMN_1366019	0000840390	S	482	TGGTGCTCAGTAAAGGTGCAGAGTTCCTGCTCCGCTTGGGAGCTGTCTGC	1	-	64051893-64051942	1q12	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 6 (Cacng6), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638564-S	ILMN_290973	LOC685019	XM_001061948.1	XM_001061948.1		685019	109457782	XM_001061948.1	LOC685019	XP_001061948.1	ILMN_1367309	0007100309	S	1793	GGGGGTGGGTCAAGAACATCCGAAATGGCCTGATGAACCTGTGTTGCTGC	1	+	47783008-47783057	1q11	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC685019), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638572-S	ILMN_290973	LOC685019	XM_001061948.1	XM_001061948.1		685019	109457782	XM_001061948.1	LOC685019	XP_001061948.1	ILMN_1366437	0004780068	S	1377	CTACTTTTTGGAAAAGCAGGCTCTTCAAGAGTGTGACATCCCAACCCGGC	1	+	47782592-47782641	1q11	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC685019), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652486-S	ILMN_48798	LOC500877	XM_576277.1	XM_576277.1		500877	62652486	XM_576277.1	LOC500877	XP_576277.1	ILMN_1361130	0003060193	S	255	GTGTTGGGCCTTACCTAGTTTCAGAGCCTCAGGATATTTGCAAGTGGCTG					PREDICTED: Rattus norvegicus similar to Ab1-152 (LOC500877), mRNA.					
Rattus norvegicus	RefSeq	GI_62643078-S	ILMN_53041	LOC502510	XM_577993.1	XM_577993.1		502510	62643078	XM_577993.1	LOC502510	XP_577993.1	ILMN_1363401	0003940500	S	1849	TCTCCTTCTCGTTACTGTGGGTTGAACACGACCCCGTGCTGAGAGCAGGC				2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25439 (LOC502510), mRNA.					
Rattus norvegicus	RefSeq	GI_62652456-S	ILMN_264841	LOC314996	NM_001025008.1	NM_001025008.1		314996	68163454	NM_001025008.1	LOC314996	NP_001020179.1	ILMN_1352507	0003290242	S	1911	CCCAGGGACAGCTACCTCACACACTCTTTGACCACGCCTGCCTTACTCTC	7	-	95042951-95043000	7q33	Rattus norvegicus hypothetical protein LOC314996 (LOC314996), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108871	MGC108871
Rattus norvegicus	RefSeq	GI_62655205-S	ILMN_49451	ZNF142_PREDICTED	XM_237291.4	XM_237291.4		316524	109486151	XM_237291.4	Znf142_predicted	XP_237291.4	ILMN_1367418	0005290100	S	4651	TGCAATGTTTGCCACCGTGCTTTCCGCTGGGCTGCTGGACTGCGACATCA	9	-	73906273-73906322	9q33	PREDICTED: Rattus norvegicus zinc finger protein 142 (clone pHZ-49) (predicted) (Znf142_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666398-S	ILMN_271028	RGD1562408_PREDICTED	XM_001059172.1	XM_001059172.1		501502	109512531	XM_001059172.1	RGD1562408_predicted	XP_001059172.1	ILMN_1352864	0006840594	S	579	GTCCTGTAATAGCACTCGCCTGATGTCAAAGCTGCAAGTGGACGTGGTAG				Xq11	PREDICTED: Rattus norvegicus similar to SH2 domain protein 1A (Signaling lymphocyte activation molecule-associated protein) (predicted) (RGD1562408_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647753-S	ILMN_269078	RGD1562105_PREDICTED	XM_001070699.1	XM_001070699.1		500246	109473804	XM_001070699.1	RGD1562105_predicted	XP_001070699.1	ILMN_1368068	0004920364	S	2120	GAGGCTCAATGAAGAACTGGAGAGGGAGAGGAAGAAATTCGCAGCCCTGG				4q34	PREDICTED: Rattus norvegicus similar to Rho-GTPase-activating protein 25 (predicted) (RGD1562105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655080-S	ILMN_64287	LOC497839	XM_579192.1	XM_579192.1		497839	62655080	XM_579192.1	LOC497839	XP_579192.1	ILMN_1353910	0003520301	S	824	GGGGAGAGGACCATCTGGATCATGCCTGTGACCTTGAATGACCTCCTGGA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001008523 (LOC497839), mRNA.					
Rattus norvegicus	RefSeq	GI_62661149-S	ILMN_63672	OIT1_PREDICTED	XM_214143.3	XM_214143.3		289949	109501371	XM_214143.3	Oit1_predicted	XP_214143.1	ILMN_1362315	0002900047	S	573	CGCTCTGGTGAACGGAACTACCGGACGTGTGATAAGAAAGGCCAGCTTTG	15	+	18546475-18546488:18548116-18548151	15p14	PREDICTED: Rattus norvegicus oncoprotein induced transcript 1 homolog (mouse) (predicted) (Oit1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662687-S	ILMN_52567	RGD1559626_PREDICTED	XM_224879.3	XM_224879.3		306478	109503362	XM_224879.3	RGD1559626_predicted	XP_224879.1	ILMN_1368005	0006370047	S	489	AACCAAGCTGGACGAGAAGAAGTACCCGTACTGGTCCCACCAGCCCATTG	16	-	51796092-51796141	16q12.1	PREDICTED: Rattus norvegicus similar to ATP synthase D chain, mitochondrial (predicted) (RGD1559626_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393402-S	ILMN_268975	GABRR2	NM_017292.1	NM_017292.1		29695	8393402	NM_017292.1	Gabrr2	NP_058988.1	ILMN_1366995	0001340048	S	1609	GGTGGATACATGGACCTAATGACCACACTTCCTACACCAGGCCAAGCAGC	5	+	49387070-49387119	5q21	Rattus norvegicus gamma-aminobutyric acid (GABA) receptor, rho 2 (Gabrr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence ISS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEP]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence ISS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5237] [evidence TAS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence TAS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577762-S	ILMN_297019	OLR1246	NM_001000808.1	NM_001000808.1		405094	47577762	NM_001000808.1	Olr1246	NP_001000808.1	ILMN_1362473	0003290707	S	518	TCATCAACCACTACTTCTGTGATCTTGTGCCTTTGATGCAGCTCTCCTGC	8	+	40686882-40686931	8q22	Rattus norvegicus olfactory receptor 1246 (Olr1246), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1246	Olr1246
Rattus norvegicus	RefSeq	GI_62640919-S	ILMN_278416	ODZ4_PREDICTED	XM_001063599.1	XM_001063599.1		308831	109462417	XM_001063599.1	Odz4_predicted	XP_001063599.1	ILMN_1356890	0000070132	S	8527	AGGTGCTGAACACGGGGCGGGTGCAAGGCTATGACGGCTTCTTTGTGACT				1q32	PREDICTED: Rattus norvegicus odd Oz/ten-m homolog 4 (Drosophila) (predicted) (Odz4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644699-S	ILMN_281343	NOXA1_PREDICTED	XM_001077267.1	XM_001077267.1		311793	109469524	XM_001077267.1	Noxa1_predicted	XP_001077267.1	ILMN_1365297	0006420273	S	1153	CAAAGGCCGGAGGACTTGGACTTCCGCCAAGGGGACACAGTGGATGTTCT				3p13	PREDICTED: Rattus norvegicus NADPH oxidase activator 1 (predicted) (Noxa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653762-S	ILMN_268961	NEO1	XM_001074913.1	XM_001074913.1		81735	109484812	XM_001074913.1	Neo1	XP_001074913.1	ILMN_1349541	0006370139	S	4802	CGGAAAGTCATCGACAGTGAGGTGGTTTGACACCATTGGCAGGCATTGGC				8q24	PREDICTED: Rattus norvegicus neogenin (Neo1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A process whereby non-proliferating myoblasts fuse to existing fibres or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7520] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646706-S	ILMN_54619	RGD1563154_PREDICTED	XM_231389.4	XM_231389.4		296788	109471627	XM_231389.4	RGD1563154_predicted	XP_231389.4	ILMN_1357888	0005910041	S	2050	TCCACCACTACAGTCATAATTCATGTGCTTCCCTGGACTACAACACGGCC	4	-	14631836-14631885	4q11	PREDICTED: Rattus norvegicus similar to cadherin EGF LAG seven-pass G-type receptor 2 (predicted) (RGD1563154_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655112-S	ILMN_66612	ALS2	XM_343574.3	XM_343574.3		363235	109486112	XM_343574.3	Als2	XP_343575.2	ILMN_1364836	0004670048	S	6027	GGAGACTGAAGATTGGGAAGTGTGAGGAAGCAGGGAGCTGCAGTGGTCCT	9	-	57740860-57740909	9q31	PREDICTED: Rattus norvegicus amyotrophic lateral sclerosis 2 (juvenile) homolog (human), transcript variant 2 (Als2), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEP]; The process by which receptor molecules are returned to an active state and in an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal [goid 1881] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IMP]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rac family of proteins switching to a GTP-bound active state [goid 16601] [evidence IDA]; Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]; Any process that activates or increases the activity of a GTPase of the Rac family [goid 32855] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IEA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IEA]; Any process that modulates the volume of an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis [goid 51036] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 17112] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rac family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 30676] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Increases the activity of a protein serine/threonine kinase [goid 43539] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650730-S	ILMN_267391	RGD1560665_PREDICTED	XM_001079918.1	XM_001079918.1		500655	109479437	XM_001079918.1	RGD1560665_predicted	XP_001079918.1	ILMN_1366376	0001190048	S	601	TGTTGAAAGGCTTAGGTGGGACACCGGTGGCCTAGCGGGACATCAAGAGG				6q23	PREDICTED: Rattus norvegicus similar to translocator of inner mitochondrial membrane 17a (predicted) (RGD1560665_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653654-S	ILMN_64017	PPP2R1B_PREDICTED	XM_236227.3	XM_236227.3		315648	62653654	XM_236227.3	Ppp2r1b_predicted	XP_236227.3	ILMN_1362919	0000630647	S	2252	AGCGGCCCAGCTTAGGGGCACAAACACAGCAAAGGGACCAGCATGTCAGT				8q23-q24	PREDICTED: Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform (predicted) (Ppp2r1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648670-S	ILMN_58213	GEM_PREDICTED	XM_232788.4	XM_232788.4		297902	109474700	XM_232788.4	Gem_predicted	XP_232788.4	ILMN_1371574	0005860551	S	2452	GCGGAACTGGCCTCCTTGCAGTTTTTACTGCTCTATCGAACTGTGGAGAG	5	+	26007655-26007704	5q13	PREDICTED: Rattus norvegicus GTP binding protein (gene overexpressed in skeletal muscle) (predicted) (Gem_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650669-S	ILMN_48467	RGD1561653_PREDICTED	XM_343060.3	XM_343060.3		362736	109478202	XM_343060.3	RGD1561653_predicted	XP_343061.3	ILMN_1375139	0006040538	S	8670	CTGCCAGTGTCCAGTGCTCTCTCTTTGTTCGGCATAGAATCATGCACACC	6	-	71842855-71842904	6q22	PREDICTED: Rattus norvegicus similar to HECT domain containing 1 (predicted) (RGD1561653_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576426	ILMN_281062	OLR1583	NM_001000080.1	NM_001000080.1		289241	47576426	NM_001000080.1	Olr1583	NP_001000080.1	ILMN_1650799	0006770288	S	885	TAAGGAGGTCAAAGATGCCCTACGCAGAGCCCTGTGGCAGAAGCCACTTC	13	+	89425347-89425396	13q24	Rattus norvegicus olfactory receptor 1583 (Olr1583), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1583	Olr1583
Rattus norvegicus	RefSeq	GI_62645645	ILMN_264718	RGD1307128	NM_001012354.1	NM_001012354.1		311346	59891430	NM_001012354.1	RGD1307128	NP_001012354.1	ILMN_1650493	0005570273	S	63	CTCAAGACTCGCCTCCTACCGCTCAGTGCAGAGAAGACTCCACCAGGGAA	3	-	107371333-107371333:107371522-107371570	3q35	Rattus norvegicus similar to RIKEN cDNA 2810002D13 gene (RGD1307128), mRNA.				MGC109337	MGC109337
Rattus norvegicus	RefSeq	GI_34855088-S	ILMN_56285	RGD1560453_PREDICTED	XM_574890.2	XM_574890.2		499566	109464582	XM_574890.2	RGD1560453_predicted	XP_574890.2	ILMN_1361884	0006420592	S	1270	AGTTTTGTAGAGGCAGCTCATGAGTCCGATGGGCTGGCTGTCCTGGGAGT	2	-	88282144-88282193	2q23	PREDICTED: Rattus norvegicus similar to carbonic anhydrase 13 (predicted) (RGD1560453_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659942-S	ILMN_56781	LOC289329	XM_223007.3	XM_223007.3		289329	62659942	XM_223007.3	LOC289329	XP_223007.3	ILMN_1351047	0002510056	S	1632	GTGCCCAACTGTCAAATCCACAGAAAGCCGGATGCCAGCCCCACACGACT				13q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930548H24 (LOC289329), mRNA.					
Rattus norvegicus	RefSeq	GI_57164062-S	ILMN_279376	V1RC38	NM_001009518.1	NM_001009518.1		494238	57164062	NM_001009518.1	V1rc38	NP_001009518.1	ILMN_1357345	0004070278	S	641	GCATTAGCCACCTGAGAGCATCCCCTGAGAAAAGGGCCACTCAGACTGTC	4	+	86708828-86708877	4q24	Rattus norvegicus vomeronasal 1 receptor, C38 (V1rc38), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665085-S	ILMN_283525	RGD1307753_PREDICTED	XM_001068151.1	XM_001068151.1		288907	109508555	XM_001068151.1	RGD1307753_predicted	XP_001068151.1	ILMN_1350361	0006110332	S	1688	GCCCCACCTTCGAGCCCTCTCTCTCAGGGCCAACAGACTTCACATGACAA				19q11	PREDICTED: Rattus norvegicus similar to podocan protein (predicted) (RGD1307753_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644182-S	ILMN_63364	SORT1	XM_342317.3	XM_342317.3		83576	109465374	XM_342317.3	Sort1	XP_342318.2	ILMN_1362429	0004920692	S	3094	GCTGGTCATGCGAAGCCACCTCAGAGAAGGAAACAGAGGGTGCAGTGACT	2	+	203927810-203927859	2q34	PREDICTED: Rattus norvegicus sortilin 1, transcript variant 2 (Sort1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence IEA]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence NAS]; The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes [goid 6895] [evidence IEA]; The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes [goid 6895] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IEA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse [goid 14902] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse [goid 14902] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment [goid 32509] [evidence IEA]; The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment [goid 32509] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into a cell or organelle [goid 46323] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into a cell or organelle [goid 46323] [evidence ISS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IEA]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence ISS]; Transport of a vesicle from the plasma membrane to the endosome [goid 48227] [evidence IEA]; Transport of a vesicle from the plasma membrane to the endosome [goid 48227] [evidence ISS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence IEA]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with nerve growth factor, to block apoptosis in neurons and promote nerve growth, or to initiate a change in cell activity [goid 10465] [evidence IEA]; Combining with nerve growth factor, to block apoptosis in neurons and promote nerve growth, or to initiate a change in cell activity [goid 10465] [evidence ISS]; G-protein coupled receptor for the tridecapeptide neurotensin. Associated with G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) [goid 16492] [evidence TAS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS];  [goid 30379] [evidence IEA];  [goid 30379] [evidence ISS]; Interacting selectively with nerve growth factor [goid 48406] [evidence IEA]; Interacting selectively with nerve growth factor [goid 48406] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641690-S	ILMN_271057	NDUFS8_PREDICTED	XM_001069669.1	XM_001069669.1		293652	109463300	XM_001069669.1	Ndufs8_predicted	XP_001069669.1	ILMN_1374757	0005220300	S	431	GCTGAGCCAAGAGCAGATGGCAGCCGCCGGACTACACGCTATGACATTGA				1q42	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted) (Ndufs8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652169-S	ILMN_55655	LOC503137	XM_578659.1	XM_578659.1		503137	62652169	XM_578659.1	LOC503137	XP_578659.1	ILMN_1364171	0005890133	S	2416	GTCACACCGACAAAAAGCAGCTCCCTCTGGATGGCAGGCAGCACTCTCTG					PREDICTED: Rattus norvegicus similar to LRRGT00150 (LOC503137), mRNA.					
Rattus norvegicus	RefSeq	GI_62655730	ILMN_276384	RGD1308915	XM_001077604.1	XM_001077604.1		363545	109489627	XM_001077604.1	RGD1308915	XP_001077604.1	ILMN_1649836	0004570079	S	768	CTCAGCACTAGCCAACCTGAGCCCCTGCTCCATCCCACACAGGATCTACC				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200013P24 (RGD1308915), mRNA.					
Rattus norvegicus	RefSeq	GI_47576690-S	ILMN_275707	OLR1708	NM_001000276.1	NM_001000276.1		294166	47576690	NM_001000276.1	Olr1708	NP_001000276.1	ILMN_1372094	0000450082	S	733	TCTACAAGCTTCTGTGCATATCTAAACCCAACCTCAGGCTCTCCATCTAC	20	+	832534-832583	20p12	Rattus norvegicus olfactory receptor 1708 (Olr1708), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1708; ratchr20-831802-832716_ORF	Olr1708; ratchr20-831802-832716_ORF
Rattus norvegicus	RefSeq	GI_62657703-S	ILMN_63563	LOC501760	XM_577160.1	XM_577160.1		501760	62657703	XM_577160.1	LOC501760	XP_577160.1	ILMN_1365407	0004760280	S	2216	CAGAGCAATAGTGATAAAAACTGCATGCTTCTGTAAGGCAAAGGACACTG					PREDICTED: Rattus norvegicus similar to LRRGT00088 (LOC501760), mRNA.					
Rattus norvegicus	RefSeq	GI_62651884-S	ILMN_297520	TCP11L2	NM_001017458.1	NM_001017458.1		314683	62945271	NM_001017458.1	Tcp11l2	NP_001017458.1	ILMN_1364482	0001570746	S	1602	CACTTCCTACCAACTAAAGAGAAGCTGGCCCTGGAGACCAGATGGAGGCC	7	-	21280035-21280068:21280069-21280084	7q13	Rattus norvegicus t-complex 11 (mouse) like 2 (Tcp11l2), mRNA.				RGD1307494; MGC109402	RGD1307494; MGC109402
Rattus norvegicus	RefSeq	GI_62649782-S	ILMN_265800	SYTL1	NM_001025651.1	NM_001025651.1		297872	71043697	NM_001025651.1	Sytl1	NP_001020822.1	ILMN_1361173	0003450458	S	1371	CATTTCTGGATAAAGGAAGCTCAGGGCCTCGTACCACTGCGGCCAGGATC	5	+	151870796-151870845	5q36	Rattus norvegicus synaptotagmin-like 1 (Sytl1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence ISS]	MGC112642	MGC112642
Rattus norvegicus	RefSeq	GI_62642528-S	ILMN_68792	RGD1306116_PREDICTED	XM_342068.3	XM_342068.3		361774	109460301	XM_342068.3	RGD1306116_predicted	XP_342069.3	ILMN_1356668	0001410348	S	2858	CGCTGCTGGAGGGTGTGATTGTGTTAGAGGAGTTCTGCAAGGAGCTGGCG	1	+	263691658-263691707	1q55	PREDICTED: Rattus norvegicus LOC361774 (predicted) (RGD1306116_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639827-S	ILMN_66754	LOC499162	XM_579922.1	XM_579922.1		499162	62639827	XM_579922.1	LOC499162	XP_579922.1	ILMN_1374168	0005390112	S	1181	CTACTTGGCAGATACAAACTGACCAATGGATGATGTCAGGGAGTCTACAC					PREDICTED: Rattus norvegicus LOC499162 (LOC499162), mRNA.					
Rattus norvegicus	RefSeq	GI_62655012	ILMN_274259	HSPD1	NM_022229.1	NM_022229.1		63868	11560023	NM_022229.1	Hspd1	NP_071565.1	ILMN_1651010	0002190138	S	2036	GCATCAGGACTGTAGCGCTGTGTCACCACATGAGAAGTTCAGAAGCAGCC	9	-	53884281-53884330	9q31	Rattus norvegicus heat shock protein 1 (chaperonin) (Hspd1), nuclear gene encoding mitochondrial protein, mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence ISS]; Any of the inward folds of the mitochondrial inner membrane. Their number, extent, and shape differ in mitochondria from different tissues and organisms. They appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found. Their shape can vary with the respiratory state of the mitochondria [goid 30061] [evidence IDA]; Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins [goid 30135] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence IDA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 44459] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated [goid 46696] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The series of events in which a misfolded protein stimulus is received and converted into a molecular signal [goid 2236] [evidence IDA]; Any process that contributes to cytokine production by a B cell [goid 2368] [evidence ISS]; Any series of molecular signals generated as a consequence of binding to a toll-like receptor and relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of a T cell mediated immune response to tumor cell [goid 2842] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure [goid 6458] [evidence IC ]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate, or extent of interferon-alpha production [goid 32727] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-10 production [goid 32733] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IEP]; The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones [goid 42026] [evidence ISS]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that stimulates, induces or increases the rate of macrophage activation [goid 43032] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; The switching of activated B cells from IgM biosynthesis to biosynthesis of an IgG isotype, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and one of the IgG constant region gene segments in the immunoglobulin heavy chain locus [goid 48291] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IDA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with one of the p53 family of proteins [goid 2039] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IPI]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]; Interacting selectively with a misfolded protein [goid 51787] [evidence IPI]	Hsp60	Hsp60
Rattus norvegicus	RefSeq	GI_62654092-S	ILMN_62872	LOC501037	XM_580154.1	XM_580154.1		501037	62654092	XM_580154.1	LOC501037	XP_580154.1	ILMN_1369552	0001990056	S	338	CTGAAGGCAGGAATGAGACACAACAACGCAGAGCCACAGCCATCTGTCTC					PREDICTED: Rattus norvegicus LOC501037 (LOC501037), mRNA.					
Rattus norvegicus	RefSeq	GI_62652137-S	ILMN_263813	RGD1564876_PREDICTED	XM_001080983.1	XM_001080983.1		362883	109481996	XM_001080983.1	RGD1564876_predicted	XP_001080983.1	ILMN_1369091	0004060551	S	2048	AGTGCAGTCTGCCTGCGCGAGAGTGAGTGTTTCCTGGCGGGAAGAACAGT				7q22	PREDICTED: Rattus norvegicus similar to Solute carrier family 35, member E3 (predicted) (RGD1564876_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_22507313-S	ILMN_58735	NMT1	NM_148891.2	NM_148891.2		259274	67514568	NM_148891.2	Nmt1	NP_683689.1	ILMN_1373708	0005390064	S	1753	CAAAACATTCCTGGAGAAGCTCAAGTTCGGCATAGGGGACGGCAACCTGC	10	+	92229194-92229243	10q32.1	Rattus norvegicus N-myristoyltransferase 1 (Nmt1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The covalent or non-covalent attachment of a myristoyl moiety to the N-terminal amino acid residue of a protein [goid 6499] [evidence ISS]; The covalent or non-covalent attachment of a myristoyl moiety to the N-terminal amino acid residue of a protein [goid 6499] [evidence IEA]	Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide [goid 4379] [evidence ISS]; Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide [goid 4379] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule [goid 19107] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_6981537-S	ILMN_262473	ST8SIA1	NM_012813.1	NM_012813.1		25280	6981537	NM_012813.1	St8sia1	NP_036945.1	ILMN_1350880	0006110632	S	884	TGGTGAGTGCAGCCTTGGGCCTTTGTGAGGAGGTGTCCATCTACGGCTTC	4	-	180722670-180722719	4q44	Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 (St8sia1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IDA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IDA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	Siat8; Siat8a	Siat8; Siat8a
Rattus norvegicus	RefSeq	GI_62641350	ILMN_59091	LOC497040	XM_215087.3	XM_215087.3		497040	62641350	XM_215087.3	LOC497040	XP_215087.3	ILMN_1650204	0004280059	S	2374	CCATTGGCCCTGAAGCAACCTGGATATCGCAAACAGTGGGAGAAGCCCAT				1q36	PREDICTED: Rattus norvegicus polyserase-2 (LOC497040), mRNA.					
Rattus norvegicus	RefSeq	GI_20302050-S	ILMN_283588	NEDD8	NM_138878.1	NM_138878.1		25490	20302050	NM_138878.1	Nedd8	NP_620233.1	ILMN_1353274	0006760433	S	238	GATTCTAGGTGGTTCCGTCCTCCACCTGGTGTTGGCTCTTAGAGGAGGTG	15	-	33797738-33797787	15p13	Rattus norvegicus neural precursor cell expressed, developmentally down-regulated gene 8 (Nedd8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105320	MGC105320
Rattus norvegicus	RefSeq	GI_34852119-S	ILMN_278884	TRIM31_PREDICTED	XM_001075715.1	XM_001075715.1		294208	109509718	XM_001075715.1	Trim31_predicted	XP_001075715.1	ILMN_1367429	0003840687	S	1169	CAGAAATCTGGGAGCCCTCAGGTGGGGCATGCATCATTGGCGTGGCTACA				20p12	PREDICTED: Rattus norvegicus tripartite motif protein 31 (predicted) (Trim31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656564	ILMN_267807	GLOD4	NM_001014227.1	NM_001014227.1		363644	62079188	NM_001014227.1	Glod4	NP_001014249.1	ILMN_1650267	0000060746	S	545	GAAATGGGCTTTGCTGGGCTATGCTGATGACCAGTGCAAGCTGGAGCTAC	10	-	63582342-63582391	10q24	Rattus norvegicus glyoxalase domain containing 4 (Glod4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62648532-S	ILMN_285063	RGD1564053_PREDICTED	XM_001065792.1	XM_001065792.1		500390	109476033	XM_001065792.1	RGD1564053_predicted	XP_001065792.1	ILMN_1368353	0006130687	S	902	GTGAAGACAGCAGCTCTAGTCCGGCGGGAAGCTTGAAGATGGAGCCCAAG				5q11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1564053_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655651-S	ILMN_64547	USP7_PREDICTED	XM_340747.2	XM_340747.2		360471	62655651	XM_340747.2	Usp7_predicted	XP_340748.2	ILMN_1369921	0004050050	S	4376	GTGAACTTGGCCGACTTGGACTCTGCGTAGCTTTACGGGCCCTCTCCTTG				10q12	PREDICTED: Rattus norvegicus ubiquitin specific protease 7 (herpes virus-associated) (predicted) (Usp7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51092263-S	ILMN_295648	PRL3B1	NM_012535.1	NM_012535.1		24283	51092263	NM_012535.1	Prl3b1	NP_036667.1	ILMN_1354618	0006200593	S	511	GGGACTGGAGACCATACTCAGCAGGGTTCAACCTGGAGCTGTTGGAAGTG	17	-	44337295-44337322:44338940-44338961	17p11	Rattus norvegicus Prolactin family 3, subfamily b, member 1 (Prl3b1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Pl2; Csh2; rPLII	Pl2; Csh2; rPLII
Rattus norvegicus	RefSeq	GI_62659442-I	ILMN_48220	UCHL5_PREDICTED	XM_573467.1	XM_573467.1		360853	62659442	XM_573467.1	Uchl5_predicted	XP_573467.1	ILMN_1375610	0007040273	S	1801	CAACCTGGTTTTCAAGATACTGTTCTGGGTGTTCATTAAAAATTAAGGGT				13q21	PREDICTED: Rattus norvegicus ubiquitin carboxyl-terminal hydrolase L5 (predicted) (Uchl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254748-S	ILMN_265836	LAPTM5	NM_053538.2	NM_053538.2		89783	40254748	NM_053538.2	Laptm5	NP_445990.2	ILMN_1357030	0003800288	S	1870	ATGGTGGCAGCAAGGAGGGTCAGTCCAGGTGTCTCTGCCCACTTTCCCAT	5	+	149797749-149797798	5q36	Rattus norvegicus lysosomal-associated protein transmembrane 5 (Laptm5), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			gcd-10	gcd-10
Rattus norvegicus	RefSeq	GI_56090454-S	ILMN_291730	TMEM18	NM_001007748.1	NM_001007748.1		362722	56090454	NM_001007748.1	Tmem18	NP_001007749.1	ILMN_1367804	0001240706	S	1253	GTCAGCAGTACCCAGGCTGAGGGAGCAGTGGGCAGGTCTGGAAAAGAATG	6	+	48472855-48472904	6q16	Rattus norvegicus transmembrane protein 18 (Tmem18), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93786	MGC93786
Rattus norvegicus	RefSeq	GI_47577816-S	ILMN_301143	OLR1219	NM_001000965.1	NM_001000965.1		405318	47577816	NM_001000965.1	Olr1219	NP_001000965.1	ILMN_1366069	0004060411	S	898	GCGCTGAAGAGAACACTGAGGAGACTCACAGTGAGTGAACCACTGGGGCT	8	+	40336075-40336124	8q21	Rattus norvegicus olfactory receptor 1219 (Olr1219), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1219	Olr1219
Rattus norvegicus	RefSeq	GI_62652861-S	ILMN_272986	LOC362972	XM_001078083.1	XM_001078083.1		362972	109482582	XM_001078083.1	LOC362972	XP_001078083.1	ILMN_1356656	0003170039	S	1272	CTCAAGCATGGATATCACCCATCTCTCCACAAACCCCAAGGCAGCTCTGC				7q34	PREDICTED: Rattus norvegicus similar to adiponutrin (LOC362972), mRNA.					
Rattus norvegicus	RefSeq	GI_62665836-S	ILMN_287720	LOC499418	NM_001024296.1	NM_001024296.1		499418	66730328	NM_001024296.1	LOC499418	NP_001019467.1	ILMN_1359375	0003450008	S	876	TCATCAACACCTACGGCATCCTGAAGCAGCGTCCAGACTTGCGGGCCAAC	20	-	12489308-12489357	20p12	Rattus norvegicus similar to Putative protein C21orf56 homolog (LOC499418), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_66730350	ILMN_286128	LOC499240	NM_001024287.1	NM_001024287.1		499240	66730350	NM_001024287.1	LOC499240	NP_001019458.1	ILMN_1530478	0002690735	S	588	TTGGGCTTGAAGAAACAAAAAGGACAAAGAGCATCTAAAGAAAAAGAAAT	1	-	167337320-167337339:167338561-167338590	1q33	Rattus norvegicus similar to predicted gene ICRFP703B1614Q5.5 (LOC499240), mRNA.					
Rattus norvegicus	RefSeq	GI_62641116-S	ILMN_286128	LOC499240	NM_001024287.1	NM_001024287.1		499240	66730350	NM_001024287.1	LOC499240	NP_001019458.1	ILMN_1351095	0001660286	S	884	CTGAGGAACTGCTCAGGACACCTATTCACAGAGGGACAGGCATGCCCACT	1	-	167333428-167333477	1q33	Rattus norvegicus similar to predicted gene ICRFP703B1614Q5.5 (LOC499240), mRNA.					
Rattus norvegicus	RefSeq	GI_62656944-S	ILMN_56227	HOXB1_PREDICTED	XM_220896.3	XM_220896.3		303491	109488883	XM_220896.3	Hoxb1_predicted	XP_220896.3	ILMN_1359593	0005130400	S	760	TGCTCGTCAGAACCCAGCTCTCTCACTGCCCGGACCTTCGACTGGATGAA	10	+	85099392-85099441	10q31	PREDICTED: Rattus norvegicus homeo box B1 (predicted) (Hoxb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659472-S	ILMN_49624	RGD1561496_PREDICTED	XM_222721.4	XM_222721.4		289085	109498012	XM_222721.4	RGD1561496_predicted	XP_222721.4	ILMN_1360585	0006020082	S	3011	ACCAGCTTCAAGATCAACCCGAAACCGAGGAAGACCCCAGTCCGAACGTC	13	+	66712287-66712336	13q21	PREDICTED: Rattus norvegicus similar to 2310050N11Rik protein (predicted) (RGD1561496_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662774-S	ILMN_279183	RGD1563097_PREDICTED	XM_001068217.1	XM_001068217.1		364613	109504325	XM_001068217.1	RGD1563097_predicted	XP_001068217.1	ILMN_1370382	0006420750	S	65	CAAGGGCAGCAACAACGCTGAGAAGAGAGGCAAACGCCAGGTCCTCAGGC				16q12.3	PREDICTED: Rattus norvegicus similar to ribosomal protein S15a (predicted) (RGD1563097_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027393-S	ILMN_302390	SEBOX	NM_023951.1	NM_023951.1		58922	13027393	NM_023951.1	Sebox	NP_076441.1	ILMN_1364245	0001570592	S	390	AGCCCCCATTTTGGGTCCAGGGCAGAGTTGGTCAGGGGCTAAAGCTGCAG	10	+	64614419-64614468	10q25	Rattus norvegicus SEBOX homeobox (Sebox), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Sebox	Sebox
Rattus norvegicus	RefSeq	GI_47577698-S	ILMN_262679	OLR636	NM_001000645.1	NM_001000645.1		404841	47577698	NM_001000645.1	Olr636	NP_001000645.1	ILMN_1359868	0006980079	S	344	CCATGGCCTTTGACCGTTGTGTGGCCATCTGCAAGCCTCTCCACTGCATG	3	+	72454708-72454757	3q24	Rattus norvegicus olfactory receptor 636 (Olr636), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr636	Olr636
Rattus norvegicus	RefSeq	GI_62655097-A	ILMN_291010	ORC2L	NM_001012003.1	NM_001012003.1		301430	58865573	NM_001012003.1	Orc2l	NP_001012003.1	ILMN_1376515	0003800497	S	1609	GCAGTGTCGGGAAGCATTCCTTGTTAACAGTGATCTCACACTCCGAGCCC	9	-	57127318-57127367	9q31	Rattus norvegicus origin recognition complex, subunit 2-like (yeast) (Orc2l), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A multisubunit complex that is located at the replication origins of a chromosome [goid 808] [evidence IEA]; The region of a condensed chromosome kinetochore closest to centromeric DNA; in mammals the CREST antigens (CENP proteins) are found in this layer; this layer may help define underlying centromeric chromatin structure and position of the kinetochore on the chromosome [goid 939] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A multisubunit complex that is located at the replication origins of a chromosome in the nucleus [goid 5664] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally [goid 3688] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Orc2	Orc2
Rattus norvegicus	RefSeq	GI_51948531-S	ILMN_287329	TBC1D20	NM_001004281.1	NM_001004281.1		362237	51948531	NM_001004281.1	Tbc1d20	NP_001004281.1	ILMN_1363352	0002230364	S	1204	CTGGCAGTGGTGAAGAGTGCCCTGGAGTGGGCCCCTAAGTTCCAGCTGCA	3	+	142640037-142640086	3q41	Rattus norvegicus TBC1 domain family, member 20 (Tbc1d20), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]	MGC94895	MGC94895
Rattus norvegicus	RefSeq	GI_27690901-S	ILMN_67515	RGD1308861_PREDICTED	XM_213541.3	XM_213541.3		287881	109489503	XM_213541.3	RGD1308861_predicted	XP_213541.1	ILMN_2039772	0005900615	S	351	CATTCACCAGCGGGATGAGACAGGCTGGACACCACTGCATATCGCTTGCA	10	-	109942260-109942309	10q32.3	PREDICTED: Rattus norvegicus similar to protein phosphatase 1, regulatory subunit 12C; myosin-binding subunit 85 (predicted) (RGD1308861_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642150-S	ILMN_51139	RGD1310016_PREDICTED	XM_219778.4	XM_219778.4		309306	109460017	XM_219778.4	RGD1310016_predicted	XP_219778.4	ILMN_1352316	0000670348	S	3785	CTCGAGCCGCCCGTGTGGACAACTTTGTAGTAGCCCTGAAGAGACTGCAC	1	+	233316910-233316959	1q52	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1310016_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871614-S	ILMN_262703	RGD1310573_PREDICTED	XM_001079113.1	XM_001079113.1		363627	109491061	XM_001079113.1	RGD1310573_predicted	XP_001079113.1	ILMN_1352351	0006370551	S	391	CTGCCTAGCCTGCCCCGAGAGTCACAGATTTTCATCATCAGTCGCCACGG				10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9930039A11 gene (predicted) (RGD1310573_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394161-A	ILMN_287566	ACO1	NM_017321.1	NM_017321.1		50655	8394161	NM_017321.1	Aco1	NP_059017.1	ILMN_1376951	0006650047	S	3013	TAGCAAGATGAGCAAGTGGGCCCTGCCATTCCTGGAGGCTCAGCGGCAGG	5	+	57591363-57591412	5q22	Rattus norvegicus aconitase 1, soluble (Aco1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle [goid 6101] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IDA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence TAS]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence ISS]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence IDA]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence IEA]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence IDA]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence TAS]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence ISS]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence IEA]; Interacting selectively with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins [goid 30350] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with the 5' untranslated region of an mRNA molecule [goid 48027] [evidence IDA]; Interacting selectively with an iron-sulfur cluster, a combination of iron and sulfur atoms [goid 51536] [evidence IDA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]	Ratireb; Acon1	Ratireb; Acon1
Rattus norvegicus	RefSeq	GI_8394049-S	ILMN_266158	PRL4A1	NM_017036.1	NM_017036.1		24656	8394049	NM_017036.1	Prl4a1	NP_058732.1	ILMN_1360329	0001580161	S	384	CCATCTGTGGGCTGAAATGTGTGACAGGCTAGGATCCACTCCTCCTACCC	17	-	43276504-43276532:43278193-43278213	17p11	Rattus norvegicus prolactin family 4, subfamily a, member 1 (Prl4a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpa; Plpa	Prlpa; Plpa
Rattus norvegicus	RefSeq	GI_18426847-S	ILMN_271442	TRIM9	NM_130420.1	NM_130420.1		155812	18426847	NM_130420.1	Trim9	NP_569104.1	ILMN_1358697	0004730092	S	3369	TAAAAAACAACATGACCAGAGGACACAGGACCCAGCCACAACCCTGGGCC	6	-	92358779-92358828	6q24	Rattus norvegicus tripartite motif-containing 9 (Trim9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion-dependent exocytosis [goid 45955] [evidence IEP]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18959249-S	ILMN_300896	PRKCD	NM_133307.1	NM_133307.1		170538	18959249	NM_133307.1	Prkcd	NP_579841.1	ILMN_1360400	0005050603	S	2432	GCCCTGGTTTGCATCCTCACTGCCCATGAAGAAGAGTGGGTGACTGGTGA	16	-	5954441-5954490	16p16	Rattus norvegicus protein kinase C, delta (Prkcd), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The directed movement of aspartate, the anion of aspartic acid, into, out of, within or between cells [goid 15810] [evidence IMP]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32613] [evidence ISS]; The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32613] [evidence IEA]; The appearance of interleukin-12 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32615] [evidence ISS]; The appearance of interleukin-12 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32615] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 32963] [evidence IMP]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32613] [evidence IEA]; The appearance of interleukin-12 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32615] [evidence IEA]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence IEA]	Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol but not calcium [goid 4699] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Pkcd	Pkcd
Rattus norvegicus	RefSeq	GI_62650833-S	ILMN_56856	RGD1564654_PREDICTED	XM_234300.4	XM_234300.4		299142	109478280	XM_234300.4	RGD1564654_predicted	XP_234300.4	ILMN_1363252	0006290170	S	2322	AAGAGACCTTCGTCTTCCAGGTGGCCCTCTTCCAGCTCTCGGATGTTACC	6	+	96774261-96774310	6q24	PREDICTED: Rattus norvegicus similar to synaptotagmin XIV-related protein Strep14 (predicted) (RGD1564654_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48976077-S	ILMN_268213	MB	NM_021588.2	NM_021588.2		59108	48976077	NM_021588.2	Mb	NP_067599.1	ILMN_1354633	0002340528	S	824	GGAGACAGAGGGTTACTTAGAGGGAGTGGAGGGTGGAAAGTGGGCAGGTG	7	-	115087631-115087680	7q34	Rattus norvegicus myoglobin (Mb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IDA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]; A process whereby force is generated within slow-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The slow-twitch skeletal muscle is characterized by slow time parameters, low force development and resistance to fatigue [goid 31444] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence IEA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence NAS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641739-S	ILMN_297890	BLES03	NM_001024233.1	NM_001024233.1		266609	66793363	NM_001024233.1	Bles03	NP_001019404.1	ILMN_1367386	0002340576	S	1186	CCCTCAGAAGGGAGAAAACTTAGTGCTTCCAGTCCCTGCCCTTGGAGCCA	1	+	208072668-208072717	1q43	Rattus norvegicus basophilic leukemia expressed protein BLES03 (Bles03), mRNA.					
Rattus norvegicus	RefSeq	GI_13592056-S	ILMN_282800	RPL18	NM_031102.1	NM_031102.1		81766	13592056	NM_031102.1	Rpl18	NP_112364.1	ILMN_1359760	0003520195	S	538	CCGAAGGGCCAGCCGAGGCTACAAAAACTAACCCTGGCTCTTACTGTTAA	1	+	96189125-96189154:96189155-96189174	1q22	Rattus norvegicus ribosomal protein L18 (Rpl18), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665289-S	ILMN_262419	RGD1308307_PREDICTED	XM_001075729.1	XM_001075729.1		307852	109508783	XM_001075729.1	RGD1308307_predicted	XP_001075729.1	ILMN_1367404	0003840309	S	2749	GCCAAGGCCAAGCTCTACCCCGTCACCTCTTTTTTCACTCACAAGCGTAG				19q12	PREDICTED: Rattus norvegicus similar to pyruvate dehydrogenase phosphatase regulatory subunit (predicted), transcript variant 1 (RGD1308307_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59710098-A	ILMN_298162	GNG10	NM_053660.1	NM_053660.1		114119	59710098	NM_053660.1	Gng10	NP_446112.1	ILMN_1376746	0000380440	S	159	AGAATGCATGCAAGGACGCCCTGCTGCTTGGTGTTCCGGCTGGAAGCAAC	5	+	77087187-77087236	5q24	Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 10 (Gng10), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IDA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	MGC124511	MGC124511
Rattus norvegicus	RefSeq	GI_62650772-S	ILMN_53752	LOC500663	XM_576041.1	XM_576041.1		500663	62650772	XM_576041.1	LOC500663	XP_576041.1	ILMN_1354572	0001850735	S	611	CTGTGCACTGGGCAGCCAGCTCTGTAGCCAGAGATGCAGACAACATGTTA					PREDICTED: Rattus norvegicus similar to serologically defined colon cancer antigen 1 isoform a (LOC500663), mRNA.					
Rattus norvegicus	RefSeq	GI_62657222-S	ILMN_300704	RGD1559716_PREDICTED	XM_001081576.1	XM_001081576.1		498013	109492082	XM_001081576.1	RGD1559716_predicted	XP_001081576.1	ILMN_1357422	0003840576	S	4147	CCAGGAAGGCAGCTAAGACCAGACAGGGACAGAGACAGGTTTTCAGGGCC				10q32.1	PREDICTED: Rattus norvegicus similar to protein kinase/endoribonuclease(IRE1) alpha (predicted) (RGD1559716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666460-S	ILMN_268391	RGD1561445_PREDICTED	XM_001062216.1	XM_001062216.1		298320	109512498	XM_001062216.1	RGD1561445_predicted	XP_001062216.1	ILMN_1354860	0004060348	S	5010	AATGGCCAAGAAGAAAGCCCAAGCCTGGAGCCAAATGGCAGATCTCATGC				Xq12	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561445_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646536-S	ILMN_67745	RGD1306056_PREDICTED	XM_230961.4	XM_230961.4		296474	109469345	XM_230961.4	RGD1306056_predicted	XP_230961.4	ILMN_1362263	0003290435	S	8532	TCGAACATGCCCCAGAAGTGATATGGACCAGCGGCCAACCAAGAGCTGGC	3	-	170370199-170370248	3q43	PREDICTED: Rattus norvegicus similar to Peroxisomal proliferator-activated receptor A interacting complex 285 kDa protein (PPAR-alpha interacting complex protein 285) (predicted) (RGD1306056_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646538-S	ILMN_67745	RGD1306056_PREDICTED	XM_230961.4	XM_230961.4		296474	109469345	XM_230961.4	RGD1306056_predicted	XP_230961.4	ILMN_1364627	0002480048	S	1197	ACAGGAGTTACAGGAGTGGGTTCAGCGGGCACAAGACATGGAGCTGCGAG	3	-	170380693-170380742	3q43	PREDICTED: Rattus norvegicus similar to Peroxisomal proliferator-activated receptor A interacting complex 285 kDa protein (PPAR-alpha interacting complex protein 285) (predicted) (RGD1306056_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662049-S	ILMN_58959	KPNB3_PREDICTED	XM_224534.3	XM_224534.3		306182	62662049	XM_224534.3	Kpnb3_predicted	XP_224534.3	ILMN_1365751	0001190440	S	4463	GGCTTAGGATTTTCATTGCAGACTGTAATTGCTCAGAGCCACACGCAGCT				15q24	PREDICTED: Rattus norvegicus karyopherin (importin) beta 3 (predicted) (Kpnb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078556-S	ILMN_274007	SLC16A4	NM_001013913.1	NM_001013913.1		295356	62078556	NM_001013913.1	Slc16a4	NP_001013935.1	ILMN_1359771	0002120451	S	1621	CCACTGGCTGAAAGATGGAAACTCAAGCAGTCTGACCTTCTAAGGACTAC				2q34	Rattus norvegicus solute carrier family 16, member 4 (monocarboxylic acid transporter 5) (Slc16a4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_41281722-I	ILMN_268806	FMO4	NM_144561.1	NM_144561.1		246247	41281722	NM_144561.1	Fmo4	NP_653147.1	ILMN_1375784	0003290142	I	2181	CATAGTACAAACCTCTCACCAGAAGCTGCCACTGTGTCCTTGAGCCCTCC	13	-	78476257-78476306	13q22	Rattus norvegicus flavin containing monooxygenase 4 (Fmo4), transcript variant 2, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence NAS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	MGC93155	MGC93155
Rattus norvegicus	RefSeq	GI_62645052-S	ILMN_62132	LOC499792	XM_575127.1	XM_575127.1		499792	62645052	XM_575127.1	LOC499792	XP_575127.1	ILMN_1356702	0006650333	S	908	GTGTTGGGATTCTGGGGTGCACCCTTTTATTTGTGATTGGATGTTCGGTG					PREDICTED: Rattus norvegicus similar to Transcription factor Sp3 (SPR-2) (LOC499792), mRNA.					
Rattus norvegicus	RefSeq	GI_62652081-S	ILMN_51162	LOC500830	XM_576220.1	XM_576220.1		500830	62652081	XM_576220.1	LOC500830	XP_576220.1	ILMN_1349370	0006660278	S	774	CCTCTTCACTCTCTGGATGGCACGGGAGACCACGGGGAGAAGTTGTGCCA					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC500830), mRNA.					
Rattus norvegicus	RefSeq	GI_62657254-S	ILMN_52475	LOC498016	XM_579770.1	XM_579770.1		498016	62657254	XM_579770.1	LOC498016	XP_579770.1	ILMN_1368036	0002470072	S	210	GTGGCATTGGAAGGTGCAAAGAGCTACCCCGGAAACGAGGCACAACTCGC					PREDICTED: Rattus norvegicus LOC498016 (LOC498016), mRNA.					
Rattus norvegicus	RefSeq	GI_54312101-S	ILMN_288778	ITCH	NM_001005887.1	NM_001005887.1		311567	54312101	NM_001005887.1	Itch	NP_001005887.1	ILMN_1373173	0003130433	S	2203	GGGATGCAGGAGATCGATTTGAATGACTGGCAGAGACACGCCATCTACCG	3	+	145696153-145696202	3q42	Rattus norvegicus itchy, E3 ubiquitin protein ligase (Itch), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658556-S	ILMN_276234	DHRSX_PREDICTED	XM_001075035.1	XM_001075035.1		288525	109496699	XM_001075035.1	Dhrsx_predicted	XP_001075035.1	ILMN_1363567	0006860341	S	951	GTCTTGTAGACTGACTGGCGCGGCCTGGGTGGCGGTCGGGGAATAAAGGT				12q11	PREDICTED: Rattus norvegicus dehydrogenase/reductase (SDR family) X chromosome (predicted) (Dhrsx_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649911	ILMN_291356	LOC690388	XM_001074304.1	XM_001074304.1		690388	109475710	XM_001074304.1	LOC690388	XP_001074304.1	ILMN_1649838	0003940731	S	473	ACCTGACTCTGTGCCTCAAGGACCATCCGTACAGCGAAAAGTACCGAGGC	5	-	157564388-157564437	5q36	PREDICTED: Rattus norvegicus similar to phospholipase A2, group IIF (LOC690388), mRNA.					
Rattus norvegicus	RefSeq	GI_62646368-S	ILMN_275681	RGD1310800_PREDICTED	XM_001070779.1	XM_001070779.1		362269	109471317	XM_001070779.1	RGD1310800_predicted	XP_001070779.1	ILMN_1369953	0004610279	S	2422	ACCCCACCTAACATATCCTGCGGGGAAGGAGGAACTCCAGGGGTGCTGTT				3q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA F730014I05 (predicted) (RGD1310800_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577088-S	ILMN_302729	OLR768	NM_001000919.1	NM_001000919.1		405234	47577088	NM_001000919.1	Olr768	NP_001000919.1	ILMN_1369637	0005690402	S	472	AGTCACTTGTTAGTGGTTGTACAGCTACCTTACTGTGGTCCCAGGGAAAT	3	-	97180394-97180443	3q34	Rattus norvegicus olfactory receptor 768 (Olr768), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr768	Olr768
Rattus norvegicus	RefSeq	GI_58000424-A	ILMN_273704	SPETEX-2B	NM_001011697.1	NM_001011697.1		497084	58743344	NM_001011697.1	Spetex-2B	NP_001011697.1	ILMN_1376544	0002810685	S	39	GGGAGACCAAGGAGAGACCAGAACGAGGCAGAAGAAAGCTGGCCTCCTGT	15	+	6011246-6011295	15p16	Rattus norvegicus Spetex-2B protein (Spetex-2B), mRNA.					
Rattus norvegicus	RefSeq	GI_58743344-S	ILMN_273704	SPETEX-2B	NM_001011697.1	NM_001011697.1		497084	58743344	NM_001011697.1	Spetex-2B	NP_001011697.1	ILMN_1366059	0001990746	S	479	CTGAACTGCAAGCATCCTGTGAGGAGGGAAAGAGGTTCTGTGAGGAGGCC	15	+	6014630-6014679	15p16	Rattus norvegicus Spetex-2B protein (Spetex-2B), mRNA.					
Rattus norvegicus	RefSeq	GI_62644970-A	ILMN_291836	MAPKAP1	NM_001011964.1	NM_001011964.1		296648	58865505	NM_001011964.1	Mapkap1	NP_001011964.1	ILMN_1376703	0002510369	S	2111	CTGCTGGGCGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATTGGACTGAA	3	+	13642845-13642894	3p11	Rattus norvegicus mitogen-activated protein kinase associated protein 1 (Mapkap1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62651795-S	ILMN_267543	ILVBL_PREDICTED	XM_001074573.1	XM_001074573.1		362843	109481577	XM_001074573.1	Ilvbl_predicted	XP_001074573.1	ILMN_1352276	0004210184	S	2181	CAAGTGGGGAATGGGAGGACCAAAGCTCAAAGAGGCACCTTGGCAACCCC				7q11	PREDICTED: Rattus norvegicus ilvB (bacterial acetolactate synthase)-like (predicted) (Ilvbl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542160-S	ILMN_297370	ATP4B	NM_012510.2	NM_012510.2		24217	31542160	NM_012510.2	Atp4b	NP_036642.2	ILMN_1369490	0002510500	S	1294	GAACCCAGAGTCCGGCTACCACTAAGGGACAACCCATCTGTAGGGCATTT	16	+	81008877-81008926	16q12.5	Rattus norvegicus ATPase, H+/K+ exchanging, beta polypeptide (Atp4b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion [goid 1696] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence TAS]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	S76401S1	S76401S1
Rattus norvegicus	RefSeq	GI_16923967-S	ILMN_267979	NUDT1	NM_057120.1	NM_057120.1		117260	16923967	NM_057120.1	Nudt1	NP_476461.1	ILMN_1360956	0001660300	S	727	GGGGTTTGGAGAGATTGAGGATGGCCCGTAAGCCTTTAATAGGTGAGCTC	12	-	14775621-14775670	12q11	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 1 (Nudt1), mRNA.		The chemical reactions and pathways resulting in the breakdown of dGTP, guanosine triphosphate [goid 6203] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: 8-oxo-7,8-dihydroguanine triphosphate = 8-oxo-7,8-dihydroguanine phosphate + diphosphate [goid 8413] [evidence NAS]; Catalysis of the reaction: 8-oxo-7,8-dihydroguanine triphosphate = 8-oxo-7,8-dihydroguanine phosphate + diphosphate [goid 8413] [evidence ISS]; Catalysis of the reaction: 8-oxo-7,8-dihydroguanine triphosphate = 8-oxo-7,8-dihydroguanine phosphate + diphosphate [goid 8413] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Mth1	Mth1
Rattus norvegicus	RefSeq	GI_62654128-S	ILMN_299108	LOC503224	XM_001067730.1	XM_001067730.1		503224	109485160	XM_001067730.1	LOC503224	XP_001067730.1	ILMN_1359978	0005220139	S	1274	TGCGGCTCAGCCACAGGTGGTTGCTGCACAACTTTCACTTTGTGGAGCGG				8q31	PREDICTED: Rattus norvegicus similar to phospholipid scramblase 1 (LOC503224), mRNA.					
Rattus norvegicus	RefSeq	GI_62667150-S	ILMN_69205	LOC501607	XM_577007.1	XM_577007.1		501607	62667150	XM_577007.1	LOC501607	XP_577007.1	ILMN_1363927	0006200685	S	896	CCACCACGGCCTAAAGCTTGTCTTTAATAACAATAAGCGAAGAACGCCCA					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC501607), mRNA.					
Rattus norvegicus	RefSeq	GI_51854220-S	ILMN_293725	MPI	NM_001004081.1	NM_001004081.1		300741	51854220	NM_001004081.1	Mpi	NP_001004081.1	ILMN_1372411	0006590341	S	1149	TCATACCTTCAGTCCAAGGAGAAATCCCTCTGTCCCGTGGTGGAGTGCTC	8	-	61299018-61299067	8q24	Rattus norvegicus mannose phosphate isomerase (mapped) (Mpi), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate [goid 4476] [evidence ISS]; Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate [goid 4476] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Mpi; MGC94106	Mpi; MGC94106
Rattus norvegicus	RefSeq	GI_62655735-S	ILMN_68650	LOC361157	XM_341443.2	XM_341443.2		361157	62655735	XM_341443.2	LOC361157	XP_341444.2	ILMN_1364489	0001780390	S	23	ATCCCTGCGCCAGAGACACCGCCGGAACCTGAAGGAAACAGACCGGATAA					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC361157), mRNA.					
Rattus norvegicus	RefSeq	GI_23463318-S	ILMN_267019	CYP4F6	NM_153318.1	NM_153318.1		266689	23463318	NM_153318.1	Cyp4f6	NP_695230.1	ILMN_1366152	0005670358	S	1468	ACCCACAGAAGAGGTCACCTCTGGCTTTTATTCCCTTCTCAGCGGGACCC	7	-	13609681-13609730	7q11	Rattus norvegicus cytochrome P450 4F6 (Cyp4f6), mRNA.		The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93133	MGC93133
Rattus norvegicus	RefSeq	GI_47576526-S	ILMN_276508	OLR877	NM_001000707.1	NM_001000707.1		404956	47576526	NM_001000707.1	Olr877	NP_001000707.1	ILMN_1366947	0002030102	S	544	GGGCCCCTCATAGAAATAGCTTGTTCAGACACAAGGCTGCTGGAACTCTT	7	-	2337105-2337154	7q11	Rattus norvegicus olfactory receptor 877 (Olr877), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr877	Olr877
Rattus norvegicus	RefSeq	GI_16758023-S	ILMN_279806	SYT9	NM_053324.1	NM_053324.1		60564	16758023	NM_053324.1	Syt9	NP_445776.1	ILMN_1372501	0002450102	S	1323	CATGGACTATGACCGTGTAGGTCACAATGAGGTCATCGGCGTGTGCCAAG	1	+	164876752-164876766:164878944-164878978	1q33	Rattus norvegicus synaptotagmin IX (Syt9), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Sytv	Sytv
Rattus norvegicus	RefSeq	GI_56090438-S	ILMN_293560	RGD1359108	NM_001007702.1	NM_001007702.1		313155	56090438	NM_001007702.1	RGD1359108	NP_001007703.1	ILMN_1372455	0002370066	S	3183	CCAAGTCACTCCATCATGGTAAATGGGTAGATCCCTCCTTCTAGTGTGCC	5	-	51839907-51839956	5q22	Rattus norvegicus similar to RIKEN cDNA 3110043O21 (RGD1359108), mRNA.				MGC93924	MGC93924
Rattus norvegicus	RefSeq	GI_56605807-S	ILMN_267356	CENPN	NM_001008366.1	NM_001008366.1		361416	56605807	NM_001008366.1	Cenpn	NP_001008367.1	ILMN_1362893	0003170156	S	1652	ACCCAAACCCCAAACTAGGAGAATCAATGGGGAGAGCTGGGGCTACTACC	19	+	47051371-47051420	19q12	Rattus norvegicus centromere protein N (Cenpn), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]			MGC94524; Da2-4; Da2-27	MGC94524; Da2-4; Da2-27
Rattus norvegicus	RefSeq	GI_23463286-S	ILMN_302444	DCPS	NM_153302.1	NM_153302.1		266605	23463286	NM_153302.1	Dcps	NP_695214.1	ILMN_1362522	0003610239	S	881	CGCACCTGCTGGCTGAAGTGATCGAGAACCTGGAGTGTGACCCCAAGCAT	8	-	34902382-34902431	8q21	Rattus norvegicus decapping enzyme, scavenger (Dcps), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins [goid 184] [evidence IEA]; Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length [goid 290] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC124934; Hint-5	MGC124934; Hint-5
Rattus norvegicus	RefSeq	GI_62656611-S	ILMN_58856	LOC303337	XM_220737.3	XM_220737.3		303337	62656611	XM_220737.3	LOC303337	XP_220737.3	ILMN_1367415	0004200088	S	1670	GCCTGAGGACGGAGACGCAGGCAGGACCCCACACTCACTCTGTAAATGTA				10q25	PREDICTED: Rattus norvegicus similar to Rab11-FIP4-like (predicted) (LOC303337), mRNA.					
Rattus norvegicus	RefSeq	GI_21426798-S	ILMN_61046	FMO2	NM_144737.2	NM_144737.2		246245	78214353	NM_144737.2	Fmo2	NP_653338.2	ILMN_1357826	0005690132	S	1544	GAGCCAGGAATGCCATCCTCACCCAGAAGCAGCGGATCCTGAAGCCGTTA	13	-	78546738-78546787	13q22	Rattus norvegicus flavin containing monooxygenase 2 (Fmo2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]	The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence IEA]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence ISS]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576614-S	ILMN_285086	OLR1675	NM_001000894.1	NM_001000894.1		405196	47576614	NM_001000894.1	Olr1675	NP_001000894.1	ILMN_1364869	0003870593	S	321	GGGGGTTACAGAGTGTGTTCTCCTGGCTCTTATGTCCTTTGACCGATATG	20	-	213147-213196	20p12	Rattus norvegicus olfactory receptor 1675 (Olr1675), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1675	Olr1675
Rattus norvegicus	RefSeq	GI_47834340-S	ILMN_265377	OLR1739	NM_001001423.1	NM_001001423.1		405202	47834340	NM_001001423.1	Olr1739	NP_001001423.1	ILMN_1352007	0004210110	S	664	GTGGCTAGGATTCCATCAGCACAGGGGAAAAGGAAAGCACTGTCCACATG	20	+	1407709-1407758	20p12	Rattus norvegicus olfactory receptor 1739 (Olr1739), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	MOR156-2b; Or11; Olr1739	MOR156-2b; Or11; Olr1739
Rattus norvegicus	RefSeq	GI_62649134	ILMN_59110	LOC500483	XM_580071.1	XM_580071.1		500483	62649134	XM_580071.1	LOC500483	XP_580071.1	ILMN_1650108	0006760332	S	592	TGTGTGTGGCTTTCCCGGGCACCATCTGAGCTCGCCGTTTAGTTTTGGGG					PREDICTED: Rattus norvegicus LOC500483 (LOC500483), mRNA.					
Rattus norvegicus	RefSeq	GI_62666672-S	ILMN_66371	LOC501535	XM_576935.1	XM_576935.1		501535	62666672	XM_576935.1	LOC501535	XP_576935.1	ILMN_1357356	0000730400	S	539	GAGCTCAACCCAAGAGAAATCGAAGAGGTTGGTGCCTGTTCTAGTGTCCC					PREDICTED: Rattus norvegicus similar to HIV-1 induced protein HIN-1 isoform 1 (LOC501535), mRNA.					
Rattus norvegicus	RefSeq	GI_57164026-S	ILMN_280972	PMS1	NM_001009535.1	NM_001009535.1		494322	57164026	NM_001009535.1	Pms1	NP_001009535.1	ILMN_1361776	0000730161	S	2687	CCGTCCGCCTATCCAGACAGCTACCCATGTACTTACCGCAAGAGGATGTC	9	+	45292491-45292491:45292492-45292540	9q22	Rattus norvegicus PMS1 postmeiotic segregation increased 1 (S. cerevisiae) (Pms1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence IEA]; A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with double-stranded DNA containing one or more mismatches [goid 30983] [evidence IEA]	Pms1	Pms1
Rattus norvegicus	RefSeq	GI_62638686-S	ILMN_61856	RGD1563626_PREDICTED	XM_344827.3	XM_344827.3		365125	109457839	XM_344827.3	RGD1563626_predicted	XP_344828.3	ILMN_1372335	0000460129	S	1658	ACACTGTGGCTGGTCGTCTCAGGCCTCTACCGATGACACCTACAAAGGAC	1	+	50651946-50651995	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1563626_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654302-S	ILMN_265077	DUSP7	XM_001070874.1	XM_001070874.1		300980	109485239	XM_001070874.1	Dusp7	XP_001070874.1	ILMN_1370892	0006180435	S	1188	CCACACACCCAGTGAACAGCTCTACTTCTCCACACCCACCAACCATAACC				8q32	PREDICTED: Rattus norvegicus dual specificity phosphatase 7 (Dusp7), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651828-S	ILMN_61705	RGD1565010_PREDICTED	XM_234947.3	XM_234947.3		314660	109480336	XM_234947.3	RGD1565010_predicted	XP_234947.3	ILMN_1351723	0006550292	S	480	GACCTGCTGGCCTCCTTCAATGACCAGAGCACATCACACTACCTTGTGGT	7	+	15904623-15904672	7q12	PREDICTED: Rattus norvegicus similar to HSPC263 (predicted) (RGD1565010_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641850-S	ILMN_290497	GANAB_PREDICTED	XM_001077792.1	XM_001077792.1		293721	109463535	XM_001077792.1	Ganab_predicted	XP_001077792.1	ILMN_1362699	0002690142	S	3651	TCACGGTCACCTGTATTTATTGCTGGGAAGAAGGCTGAGGGTGGGGGGAG				1q43	PREDICTED: Rattus norvegicus alpha glucosidase 2 alpha neutral subunit (predicted) (Ganab_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651769-S	ILMN_270207	ARID3A_PREDICTED	XM_001076973.1	XM_001076973.1		314616	109481611	XM_001076973.1	Arid3a_predicted	XP_001076973.1	ILMN_1372686	0000110551	S	767	TCCGGATCAACAGCCAAGCCTCTGAGAGTCGCCAGGACCCAGCTGTAAAT				7q11	PREDICTED: Rattus norvegicus AT rich interactive domain 3A (Bright like) (predicted) (Arid3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644448-S	ILMN_53736	LOC360354	XM_346642.2	XM_346642.2		360354	62644448	XM_346642.2	LOC360354	XP_346643.1	ILMN_1355635	0005080632	S	1269	CAGAAATGCATGCAGAGGCAGGTTGGGGGCAAGAGAGGGAAGCTCTATAG					PREDICTED: Rattus norvegicus hypothetical LOC360354 (LOC360354), mRNA.					
Rattus norvegicus	RefSeq	GI_31343430-S	ILMN_299288	HRC	NM_181369.2	NM_181369.2		292905	31343430	NM_181369.2	Hrc	NP_852034.1	ILMN_1364719	0006100435	S	2052	GAGAGCCGCGAGGTCACAGGTCAGCAGGATGCCCAGGAGTATGAGAACTA	1	+	95807194-95807209:95807289-95807322	1q22	Rattus norvegicus histidine rich calcium binding protein (Hrc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding the sarcoplasmic reticulum [goid 33017] [evidence ISS]	Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62658600-S	ILMN_59037	RGD1563400_PREDICTED	XM_341045.3	XM_341045.3		360777	109495390	XM_341045.3	RGD1563400_predicted	XP_341046.3	ILMN_1352820	0005570092	S	154	GATCTTTCTGTTGTGGAAGCAAAGGGCAACCTCGACTTCCTGACGGCCCT	12	+	18574960-18574983:18579114-18579139	12q11	PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (predicted) (RGD1563400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660697-S	ILMN_50294	DEPDC5_PREDICTED	XM_223584.3	XM_223584.3		305464	62660697	XM_223584.3	Depdc5_predicted	XP_223584.3	ILMN_1352861	0000070139	S	5427	GAGAATAAACCACAGTATATCCACGTCACAGGTGAGGACCTGGTTGTGGG				14q21	PREDICTED: Rattus norvegicus DEP domain containing 5 (predicted) (Depdc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660731-S	ILMN_282428	LOC498400	NM_001017501.1	NM_001017501.1		498400	62945361	NM_001017501.1	LOC498400	NP_001017501.1	ILMN_1351015	0000840280	S	1470	GCAGTTCAGGGGCCTGGTTCCCTTGTAAGACCTATGTTGAGTGTTTTCCC	14	-	84971247-84971296	14q21	Rattus norvegicus similar to HORMA domain containing 2 (LOC498400), mRNA.		Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_18677754-S	ILMN_271138	LPHN3	NM_130822.1	NM_130822.1		170641	18677754	NM_130822.1	Lphn3	NP_570835.1	ILMN_1370509	0006510279	S	5027	GCGCTCATTGTGGCCCTGTTGAGTTAGGTTGTGATTAACAGCTCTGATGC	14	-	28385439-28385488	14p21	Rattus norvegicus latrophilin 3 (Lphn3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Lec3; Cirl3	Lec3; Cirl3
Rattus norvegicus	RefSeq	GI_27659717-S	ILMN_287467	ELA1	NM_012552.2	NM_012552.2		24331	27659717	NM_012552.2	Ela1	NP_036684.1	ILMN_1372211	0006980301	S	877	GATCTGAAGTAAGCGAGAAGGAGTTAGGGCTGGGGTTATCGCTCAGCGGC	7	-	139439485-139439534	7q36	Rattus norvegicus elastase 1, pancreatic (Ela1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	RATELAI1; ELAI1	RATELAI1; ELAI1
Rattus norvegicus	RefSeq	GI_42734504-I	ILMN_296895	ZMYND11	NM_203369.1	NM_203369.1		291259	42734504	NM_203369.1	Zmynd11	NP_976245.1	ILMN_1375503	0000870368	I	3834	CCCATCGTGGCTGTCCAGTTCTATGATGCGTTCTGGCATTTTGTAAGCTG	17	+	71418655-71418704	17q12.1	Rattus norvegicus zinc finger, MYND domain containing 11 (Zmynd11), transcript variant 3, mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	BS69; MGC72621	BS69; MGC72621
Rattus norvegicus	RefSeq	GI_62079200-S	ILMN_271529	TMEM55B	NM_001014233.1	NM_001014233.1		364298	62079200	NM_001014233.1	Tmem55b	NP_001014255.1	ILMN_1352959	0003290044	S	1560	GGGCTGAGGTAGGGTCACTGTCTTGGGAGAGGTCAGGGATTCATCTGTGC				15p14	Rattus norvegicus transmembrane protein 55B (Tmem55b), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644459-S	ILMN_277621	LOC365949	XR_009210.1	XR_009210.1		365949	109467708	XR_009210.1	LOC365949		ILMN_1366546	0001740685	S	1563	GCTGTGGGAGTCTTGAGATGTCACAAATTCTTTTTCCTGCTGGAACACTG				2q44	PREDICTED: Rattus norvegicus similar to nemo like kinase (LOC365949), mRNA.					
Rattus norvegicus	RefSeq	GI_62638480-S	ILMN_51610	VIP	XM_217838.4	XM_217838.4		117064	109457718	XM_217838.4	Vip	XP_217838.2	ILMN_1351517	0000540022	S	1176	GTGATAGGGACTCCACCTCTCATGGATTCATCTCTCCGACTAGGATTTGC	1	+	36369271-36369320	1p11	PREDICTED: Rattus norvegicus vasoactive intestinal polypeptide (Vip), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence NAS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11067388-S	ILMN_295807	BMP15	NM_021670.1	NM_021670.1		59302	11067388	NM_021670.1	Bmp15	NP_067702.1	ILMN_1362565	0004210403	S	1110	CCAGTGTTCCCTCCATCCTTACAAGGTCAGCTTCCATCAATTGGGCTGGG	X	-	29004214-29004263	Xq13	Rattus norvegicus bone morphogenetic protein 15 (Bmp15), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Gdf-9b	Gdf-9b
Rattus norvegicus	RefSeq	GI_62641434-S	ILMN_294492	RGD1565607_PREDICTED	XM_001074389.1	XM_001074389.1		293317	109462599	XM_001074389.1	RGD1565607_predicted	XP_001074389.1	ILMN_1357812	0001450156	S	782	GGTTTGATACTGAAGGAGAAAGGTGGGCAGTCAGCACCTGTGGCATCAGC					PREDICTED: Rattus norvegicus similar to mouse deubiquitinating enzyme 6 (predicted) (RGD1565607_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648334-S	ILMN_63728	LOC500365	XM_575723.1	XM_575723.1		500365	62648334	XM_575723.1	LOC500365	XP_575723.1	ILMN_1354705	0005900324	S	1062	GAGGGTGTGGACTGGGGGCACATAAGAAATGGACTCGCCAGAATGCAGGG					PREDICTED: Rattus norvegicus similar to KIAA0965 protein (LOC500365), mRNA.					
Rattus norvegicus	RefSeq	GI_12018233-S	ILMN_286503	INSL6	NM_022583.1	NM_022583.1		50546	12018233	NM_022583.1	Insl6	NP_072105.1	ILMN_1368222	0005360341	S	546	GGGAACCATCCCCAGAGGAAGCGCAGAGGTTTCGCAGATAAATGCTGTGC	1	-	232990681-232990730	1q52	Rattus norvegicus insulin-like 6 (Insl6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27721714-S	ILMN_59905	CCR8_PREDICTED	XM_236704.2	XM_236704.2		301066	109484099	XM_236704.2	Ccr8_predicted	XP_236704.1	ILMN_1363495	0006130400	S	728	AGCTGCGGGGTTGCCTGAACCACAACAGGACCAGAGCCATCAAACTGGTG	8	+	125076121-125076170	8q32	PREDICTED: Rattus norvegicus chemokine (C-C motif) receptor 8 (predicted) (Ccr8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659580-I	ILMN_57695	SERPINC1_PREDICTED	XM_573487.1	XM_573487.1		304917	62659580	XM_573487.1	Serpinc1_predicted	XP_573487.1	ILMN_1375622	0005270500	S	1880	CTCAAGCCCTAGGGATCTGCTTTGCTGAGAGCTACACCCAAGCTCAGTGG				13q22	PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1 (predicted) (Serpinc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34854225-S	ILMN_295665	SKIV2L2	NM_001034093.1	NM_001034093.1		365668	77539759	NM_001034093.1	Skiv2l2	NP_001029265.1	ILMN_2039959	0003800722	S	3273	GCAGCGAAAGCCATTGGAAACACAGAGCTGGAGAACAAGTTTGCTGAAGG				2q14	Rattus norvegicus superkiller viralicidic activity 2-like 2 (S. cerevisiae) (Skiv2l2), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]	MGC124848; Skiv2l2	MGC124848; Skiv2l2
Rattus norvegicus	RefSeq	GI_34854162-S	ILMN_295665	SKIV2L2	NM_001034093.1	NM_001034093.1		365668	77539759	NM_001034093.1	Skiv2l2	NP_001029265.1	ILMN_1357607	0006220441	S	516	AGCTTGGCGGACCTGATGCCCAGAGTCAAGGTACAGTCGGTTGAAACAGT	2	-	44299729-44299777:44300933-44300933	2q14	Rattus norvegicus superkiller viralicidic activity 2-like 2 (S. cerevisiae) (Skiv2l2), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]	MGC124848; Skiv2l2	MGC124848; Skiv2l2
Rattus norvegicus	RefSeq	GI_20301993-S	ILMN_278963	FAP	NM_138850.1	NM_138850.1		192203	20301993	NM_138850.1	Fap	NP_620205.1	ILMN_1351232	0006660037	S	2182	GGCGATGTGGTACTCTGACCAGAACCATGGCATATCATCTGGGCGCTCCC				3q21	Rattus norvegicus fibroblast activation protein, alpha (Fap), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659320-S	ILMN_272083	PPP1R15B_PREDICTED	XM_001060603.1	XM_001060603.1		304799	109498626	XM_001060603.1	Ppp1r15b_predicted	XP_001060603.1	ILMN_1373198	0003190725	S	1910	GGATCGCAAAGGACCATGGGAAGAATTTGCAAGGGATGGATGCAGGTTCC				13q13	PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 15b (predicted) (Ppp1r15b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577664-S	ILMN_268624	OLR559	NM_001000668.1	NM_001000668.1		404870	47577664	NM_001000668.1	Olr559	NP_001000668.1	ILMN_1369358	0005360333	S	323	GCTTCTTCCTAATGCTGGCAGCCACTGAAAGTATTCTCCTGGCCGTGATG	3	+	71007178-71007227	3q24	Rattus norvegicus olfactory receptor 559 (Olr559), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr559	Olr559
Rattus norvegicus	RefSeq	GI_62655550-S	ILMN_276707	LOC679075	XM_001054590.1	XM_001054590.1		679075	109487641	XM_001054590.1	LOC679075	XP_001054590.1	ILMN_2040480	0005670187	S	997	GGTCCGCGTTATGCAGGACACCACAGTGCTTTTGGATGCCCATACTCAGA					PREDICTED: Rattus norvegicus similar to l(3)mbt-like 3 (LOC679075), mRNA.					
Rattus norvegicus	RefSeq	GI_62659804-S	ILMN_70053	LOC498296	XM_573524.1	XM_573524.1		498296	62659804	XM_573524.1	LOC498296	XP_573524.1	ILMN_1365084	0003610253	S	3726	GGCCAAGCTATCGAGGAAAGACATCACCACTCAGGGGGAAAGCAGCTCAC					PREDICTED: Rattus norvegicus similar to MGC78859 protein (LOC498296), mRNA.					
Rattus norvegicus	RefSeq	GI_6978442-S	ILMN_65380	TGFBR1	NM_012775.2	NM_012775.2		29591	77695934	NM_012775.2	Tgfbr1	NP_036907.2	ILMN_2039256	0000620431	S	1271	GCAATGGGCTTAGTATTCTGGGAAATCGCTCGACGCTGTTCCATTGGCGG	5	+	64024780-64024828:64026036-64026036	5q22	Rattus norvegicus transforming growth factor, beta receptor 1 (Tgfbr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence IEA]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence IEA]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process by which the anatomical structures of cranial skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48701] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence IEA]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone [goid 51491] [evidence ISS]; The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone [goid 60017] [evidence IEA]; The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone [goid 60017] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence IEA]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence IEA]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence IEA]; The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone [goid 60017] [evidence IEA]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence IEA]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence ISS]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I TGF-beta receptor [goid 5025] [evidence IMP]; Interacting selectively with a type II transforming growth factor beta receptor [goid 5114] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IDA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IEA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IEA]	MGC93659	MGC93659
Rattus norvegicus	RefSeq	GI_62639655-S	ILMN_271202	JOSD2_PREDICTED	XM_001080592.1	XM_001080592.1		292876	109461870	XM_001080592.1	Josd2_predicted	XP_001080592.1	ILMN_1360126	0004670577	S	548	CTACTATAATCTGGACTCAAAGCTACGGGCACCTGAAGCCCTGGGGGGCG				1q22	PREDICTED: Rattus norvegicus Josephin domain containing 2 (predicted) (Josd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644397-S	ILMN_263596	RGD1307816_PREDICTED	XM_001075401.1	XM_001075401.1		295446	109467562	XM_001075401.1	RGD1307816_predicted	XP_001075401.1	ILMN_1369762	0007050154	S	2625	TGGCGGCATTAACAAGATCAAGCCAACGGGCCTCCTCACGGTCCCCTCTC				2q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630047E20 (predicted) (RGD1307816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657323-S	ILMN_270991	NAT9_PREDICTED	XM_001081673.1	XM_001081673.1		303669	109492209	XM_001081673.1	Nat9_predicted	XP_001081673.1	ILMN_1361019	0003610546	S	1096	CGGCAGTGGATTCTGGAGCAGACAAGCCACATGGAAGAGAGACCCTACAG				10q32.2	PREDICTED: Rattus norvegicus N-acetyltransferase 9 (predicted) (Nat9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657969-S	ILMN_276723	PTPLB_PREDICTED	XM_001071670.1	XM_001071670.1		288058	109494480	XM_001071670.1	Ptplb_predicted	XP_001071670.1	ILMN_1374372	0006940132	S	530	TGGTGATAGCGGTTGGGCTGGTGAGAGCATACCTGGCTAAGGGGAGCTAC				11q22	PREDICTED: Rattus norvegicus protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b (predicted) (Ptplb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649595-S	ILMN_263952	LOC362587	XM_001055153.1	XM_001055153.1		362587	109477186	XM_001055153.1	LOC362587	XP_001055153.1	ILMN_1354877	0001090152	S	17217	CCTTAACGGAGTTCACCAGCACACCAGTCCGTTTGCTTCCGTCTCCTGTG				5q36	PREDICTED: Rattus norvegicus similar to microfilament and actin filament cross-linker protein isoform a (LOC362587), mRNA.					
Rattus norvegicus	RefSeq	GI_25282396-S	ILMN_298052	HYAL2	NM_172040.1	NM_172040.1		64468	25282396	NM_172040.1	Hyal2	NP_742037.1	ILMN_1350489	0000870092	S	1602	GCCTGTTAGGGGGTAGGCAAATGAGTCTGGAGTTGGAGTGGGCAGTACCC	8	+	112820446-112820495	8q32	Rattus norvegicus hyaluronoglucosaminidase 2 (Hyal2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine [goid 30214] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642243-S	ILMN_55171	RGD1563697_PREDICTED	XM_574665.2	XM_574665.2		499353	109460102	XM_574665.2	RGD1563697_predicted	XP_574665.2	ILMN_1361392	0005220609	S	163	GCAGTAAAGGAAGCCCTGGATGATCTTGGAGAGGAGTTTTCTGGGAGGGG	1	-	243425389-243425438	1q53	PREDICTED: Rattus norvegicus similar to Cytochrome P450 2C24 (CYPIIC24) (P450-PROS2) (predicted) (RGD1563697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653130-S	ILMN_265696	ATF7_PREDICTED	XM_001068889.1	XM_001068889.1		315333	109482985	XM_001068889.1	Atf7_predicted	XP_001068889.1	ILMN_1371079	0004670446	S	1464	CCTCCCGATGCCGCCAAAAGCGAAAGCTGTGGGTCTCCTCCCTGGAAAAG				7q36	PREDICTED: Rattus norvegicus activating transcription factor 7 (predicted) (Atf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643813-S	ILMN_66211	RGD1560320_PREDICTED	XM_342287.3	XM_342287.3		361987	109465102	XM_342287.3	RGD1560320_predicted	XP_342288.3	ILMN_1353618	0003390072	S	4351	TAAAGCTGTTGGACTTCTGTTGGAGACTCTAGGGCCCCCTCCCACTGGCC	2	+	182522247-182522296	2q34	PREDICTED: Rattus norvegicus similar to brain specific protein 4 (predicted) (RGD1560320_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642960-S	ILMN_69924	LOC499534	XM_579977.1	XM_579977.1		499534	62642960	XM_579977.1	LOC499534	XP_579977.1	ILMN_1360803	0001780750	S	417	AGAACCGACTGCAGGGGCGCTGATAATGGGGCATCCCCTCAAGACCTAGA				2q16	PREDICTED: Rattus norvegicus LOC499534 (LOC499534), mRNA.					
Rattus norvegicus	RefSeq	GI_55741767-S	ILMN_273073	SCAMP2	NM_023955.1	NM_023955.1		65168	55741767	NM_023955.1	Scamp2	NP_076445.1	ILMN_1364132	0002970082	S	2003	CCTCAGTGGAGTCTAGGTTCCTATCCACTCATCTTGGGGTGCTCCACAGG	8	+	61342581-61342630	8q24	Rattus norvegicus secretory carrier membrane protein 2 (Scamp2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence TAS]	Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence TAS]	MGC94592	MGC94592
Rattus norvegicus	RefSeq	GI_62661474-S	ILMN_66902	RGD1564324_PREDICTED	XM_214176.3	XM_214176.3		290217	109501660	XM_214176.3	RGD1564324_predicted	XP_214176.1	ILMN_1356897	0002760411	S	310	AGCACTCTGGGAGCCAGTGAACCGGTGTGGGACAAGGACCACTAGAGACT	15	+	33270911-33270946:33272466-33272474:33272475-33272479	15p13	PREDICTED: Rattus norvegicus similar to dehydrogenase/reductase member 2 (predicted) (RGD1564324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576420-S	ILMN_271887	OLR157	NM_001000169.1	NM_001000169.1		293304	47576420	NM_001000169.1	Olr157	NP_001000169.1	ILMN_1350733	0002480451	S	915	GACCAGGGAGATTCGTGAGAGGGTTGCCAAGGTGTTTCAGTGGGGACAGG	1	+	162266683-162266732	1q32	Rattus norvegicus olfactory receptor 157 (Olr157), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr157	Olr157
Rattus norvegicus	RefSeq	GI_62649877-S	ILMN_52109	LOC502989	XM_578497.1	XM_578497.1		502989	62649877	XM_578497.1	LOC502989	XP_578497.1	ILMN_2039172	0003930056	S	241	GCTGACGTAGGAGTTAGACCTGGCACTCTGGTGTTGGTCACACTGAAGGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L10-like protein (LOC502989), mRNA.					
Rattus norvegicus	RefSeq	GI_62663974-S	ILMN_266548	THNSL1	NM_001025035.1	NM_001025035.1		498805	68163508	NM_001025035.1	Thnsl1	NP_001020206.1	ILMN_1370995	0006840072	S	2410	CTCAACCAGACGTCGGCAAGCCAGCTCTACCTCCTGAGCTCGTACAATGC	17	+	95208405-95208454	17q12.3	Rattus norvegicus threonine synthase-like 1 (S. cerevisiae) (Thnsl1), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins [goid 9088] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + shikimate = ADP + shikimate 3-phosphate [goid 4765] [evidence IEA]; Catalysis of the reaction: O-phospho-L-homoserine + H2O = L-threonine + phosphate [goid 4795] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647824-S	ILMN_62226	LOC497791	XM_579382.1	XM_579382.1		497791	62647824	XM_579382.1	LOC497791	XP_579382.1	ILMN_1354839	0005270138	S	1072	TGCTGAACGTGTCAGACTCTGGGATCTACCAGTGTGCTGCAGAAAACAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013225 (LOC497791), mRNA.					
Rattus norvegicus	RefSeq	GI_62660165-S	ILMN_293335	LOC305633	XM_001069109.1	XM_001069109.1		305633	109500329	XM_001069109.1	LOC305633	XP_001069109.1	ILMN_1358269	0004810020	S	3430	CGTCCGGGTCTGTGGCACTGCTCCAAGAAGCCTTACGCGCACACACAAAT				14p22	PREDICTED: Rattus norvegicus similar to Antxr2 protein (LOC305633), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62661423-S	ILMN_64037	LOC290158	XM_224118.3	XM_224118.3		290158	62661423	XM_224118.3	LOC290158	XP_224118.3	ILMN_1367696	0006370072	S	1045	TGCTATGAGGGTGAGTGGCCAGCAGGAGAGACGTGACCAGCAACAGGTGA				15p13	PREDICTED: Rattus norvegicus similar to T cell receptor V alpha 2 chain subunit (LOC290158), mRNA.					
Rattus norvegicus	RefSeq	GI_62645813-S	ILMN_53916	LOC311401	XM_230567.3	XM_230567.3		311401	62645813	XM_230567.3	LOC311401	XP_230567.3	ILMN_1355306	0004200519	S	1512	CTTGTGCAGCAGTGGGTCTTGGTGCCCATTGTGAGTACGGAAAGCCCTGT				3q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010106G01 (LOC311401), mRNA.					
Rattus norvegicus	RefSeq	GI_62649804-S	ILMN_48466	LOC502988	XM_578496.1	XM_578496.1		502988	62649804	XM_578496.1	LOC502988	XP_578496.1	ILMN_1371985	0002680142	S	78	TCTTCAGGGCGGGTGGACAACCTGGCGGTGGATTATACCTGGGAAGACCA				5q36	PREDICTED: Rattus norvegicus similar to Sestrin 2 (Hi95) (LOC502988), mRNA.					
Rattus norvegicus	RefSeq	GI_62667025-S	ILMN_264363	LAS1L_PREDICTED	XM_001067427.1	XM_001067427.1		296865	109512021	XM_001067427.1	Las1l_predicted	XP_001067427.1	ILMN_1359470	0003710037	S	2275	TGGAGGGCCTTCTCTGGAACCAAGGACAAATGCATGGGCTCAAAGCTGGC				Xq31	PREDICTED: Rattus norvegicus LAS1-like (S. cerevisiae) (predicted) (Las1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643849-S	ILMN_302683	RGD1561111_PREDICTED	XR_007422.1	XR_007422.1		310585	109467092	XR_007422.1	RGD1561111_predicted		ILMN_1368269	0002680369	S	1333	GCTGGGCAGAAAAGCCAAGTTTGCTGGCAGGTCCTTCAGGAGCCCTCTGG				2q34	PREDICTED: Rattus norvegicus similar to Eno1 protein (predicted) (RGD1561111_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645094-S	ILMN_64261	LOC497772	XM_579493.1	XM_579493.1		497772	62645094	XM_579493.1	LOC497772	XP_579493.1	ILMN_1359817	0003120138	S	12078	GCGGAGGCTTTATCTGCTCCTGCAGACCCGGGTTCAAACCCAGTACTTTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_030827 (LOC497772), mRNA.					
Rattus norvegicus	RefSeq	GI_62666479-S	ILMN_265765	RGD1562281_PREDICTED	XR_007887.1	XR_007887.1		501511	109512470	XR_007887.1	RGD1562281_predicted		ILMN_1355391	0005690064	S	3007	AGGAGTCTGAGCGTGGAACAGGAGCCATATACCTGGAATGATAACAAGGG				Xq12	PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 5 (eIF-5) (predicted) (RGD1562281_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560056	ILMN_283127	QTRT1	NM_022250.1	NM_022250.1		64016	11560056	NM_022250.1	Qtrt1	NP_071586.1	ILMN_1650576	0004730167	S	1140	GGGGGTAGCACGGCCCCTTTTTATTGAAGGTGTGGGTCTGAGGGTCTCCT	8	+	20521822-20521871	8q13	Rattus norvegicus queuine tRNA-ribosyltransferase 1 (Qtrt1), mRNA.		The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents [goid 8616] [evidence IEA]; The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents [goid 8616] [evidence TAS]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine [goid 8479] [evidence IEA]; Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine [goid 8479] [evidence TAS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Tgut; Tgt	Tgut; Tgt
Rattus norvegicus	RefSeq	GI_56605709-S	ILMN_269692	LTBR	NM_001008315.1	NM_001008315.1		297604	56605709	NM_001008315.1	Ltbr	NP_001008316.1	ILMN_1351077	0004730064	S	1937	GGGAGAGAGGACAGTGAGAAGGGCAGGGGGGCTTCAGTAGCATTACCACA	4	-	161431952-161432001	4q42	Rattus norvegicus lymphotoxin beta receptor (TNFR superfamily, member 3) (Ltbr), mRNA.		Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94657	MGC94657
Rattus norvegicus	RefSeq	GI_34871749	ILMN_275420	POLR2J_PREDICTED	XM_001077131.1	XM_001077131.1		288588	109497176	XM_001077131.1	Polr2j_predicted	XP_001077131.1	ILMN_1650149	0006220112	S	269	CAAGATCATCATTCGTGTGCAGACCACCCCAGACTACAGCCCCCAGGAGG				12q12	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide J (predicted) (Polr2j_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643690-S	ILMN_288552	DCHS2_PREDICTED	XR_008777.1	XR_008777.1		310550	109466936	XR_008777.1	Dchs2_predicted		ILMN_1371485	0002370184	S	11248	ACAGCAGTAGCACAGCCTGGGATTAAGGCAGTTCCCCCACGAATGCCAGC				2q34	PREDICTED: Rattus norvegicus dachsous 2 (Drosophila) (predicted) (Dchs2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56790292-S	ILMN_262491	SP7	NM_181374.2	NM_181374.2		300260	56790292	NM_181374.2	Sp7	NP_852039.2	ILMN_1352476	0004610079	S	745	GTCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCCAAGGCAGTTGGC	7	-	141110361-141110410	7q36	Rattus norvegicus Sp7 transcription factor (Sp7), transcript variant 2, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Osx	Osx
Rattus norvegicus	RefSeq	GI_62642750	ILMN_59353	LOC502494	XM_577976.1	XM_577976.1		502494	62642750	XM_577976.1	LOC502494	XP_577976.1	ILMN_1649816	0004670484	S	426	GGGCGGGCCGGCCAGTCACAACACGCTGACTCACTCCTACACTAATGATA					PREDICTED: Rattus norvegicus similar to Polr3g protein (LOC502494), mRNA.					
Rattus norvegicus	RefSeq	GI_17105339-S	ILMN_287131	GMPR	NM_057188.1	NM_057188.1		117533	17105339	NM_057188.1	Gmpr	NP_476536.1	ILMN_1371475	0002680333	S	1057	TCAGTAGGAGAGCCACATTCATCCGCGTGACCCAACAGCACAACACGGTG	17	-	25148056-25148105	17p13	Rattus norvegicus guanosine monophosphate reductase (Gmpr), mRNA.		The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: inosine 5'-phosphate + NH3 + NADP+ = guanosine 5'-phosphate + NADPH + H+ [goid 3920] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660306-S	ILMN_279014	RGD1310384_PREDICTED	XM_214018.3	XM_214018.3		289530	62660306	XM_214018.3	RGD1310384_predicted	XP_214018.2	ILMN_1361376	0006370300	S	1012	GGAGGGACCTGAACCTTTTGAGGGCAAATCTGCTAGCCACGAACCACAGC	14	-	21757517-21757566	14p21	PREDICTED: Rattus norvegicus hypothetical LOC289530 (predicted) (RGD1310384_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40068045-S	ILMN_265108	CCT4	NM_182814.2	NM_182814.2		29374	40068045	NM_182814.2	Cct4	NP_877966.1	ILMN_1350731	0001170332	S	1762	GAGGCTGGCTGACTGGCACGAGTATGGAGAGAAGTATTGTGGCTAGAGTG	14	+	103687545-103687594	14q22	Rattus norvegicus chaperonin containing Tcp1, subunit 4 (delta) (Cct4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence ISS]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; Partial folding of alpha- or beta-tubulin into a non-native folding intermediate, mediated by cytosolic chaperonin CCT [goid 7022] [evidence TAS]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence TAS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27545375-S	ILMN_280617	OLR1271	NM_173300.1	NM_173300.1		286959	27545375	NM_173300.1	Olr1271	NP_775422.1	ILMN_1351508	0005700010	S	797	CTCATATTTATCATTGGGGGGCTCAACACCTTGGTGCCCACCCTAGCAGT	8	+	41169888-41169937	8q22	Rattus norvegicus olfactory receptor 1271 (Olr1271), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olp4	Olp4
Rattus norvegicus	RefSeq	GI_62656440-S	ILMN_293163	RGD1561873_PREDICTED	XM_001077498.1	XM_001077498.1		501699	109490871	XM_001077498.1	RGD1561873_predicted	XP_001077498.1	ILMN_1368753	0002510750	S	10338	GTGGACTCAGCAGCCCACGGCCAATTCCAGCTACCCGTATGTTGAGATCT				10q22	PREDICTED: Rattus norvegicus similar to myosin XV (predicted) (RGD1561873_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658861-S	ILMN_52128	RGD1564803_PREDICTED	XM_579791.2	XM_579791.2		498181	109495883	XM_579791.2	RGD1564803_predicted	XP_579791.2	ILMN_1358300	0005220167	S	486	ACCGGAGCGGTTGAAAGCCAGGTGCGACCGTTAAAGCCGTTTCCTGGTGT	12	+	34196160-34196193:34196194-34196209	12q16	PREDICTED: Rattus norvegicus RGD1564803 (predicted) (RGD1564803_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718370-S	ILMN_266857	LOC501383	XM_001081029.1	XM_001081029.1		501383	109517022	XM_001081029.1	LOC501383	XP_001081029.1	ILMN_1366616	0003140373	S	314	GAAAGTGCAAGAGAGCTGGAATTAGGCACACACCAGTAGAGAGCTTCCTG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501383), mRNA.					
Rattus norvegicus	RefSeq	GI_47577030-S	ILMN_274283	OLR779	NM_001000917.1	NM_001000917.1		405232	47577030	NM_001000917.1	Olr779	NP_001000917.1	ILMN_1373240	0000610309	S	582	GCTGGAATTCATGGTGACAGCCAACAGTGGGTTCATCTCTGTGGGATCCT	3	-	97509672-97509721	3q34	Rattus norvegicus olfactory receptor 779 (Olr779), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr779	Olr779
Rattus norvegicus	RefSeq	GI_62660304-S	ILMN_282260	SMR3A	NM_001017497.1	NM_001017497.1		498341	62945353	NM_001017497.1	Smr3a	NP_001017497.1	ILMN_1366093	0000460451	S	201	TGGTCCAGGAATTGGTCAACCACCCCCTCCACATTTTGGTCCAGGATTTG	14	-	21573472-21573521	14p21	Rattus norvegicus submaxillary gland androgen regulated protein 3A (Smr3a), mRNA.					
Rattus norvegicus	RefSeq	GI_62652120-A	ILMN_284736	CNOT2	NM_001011988.1	NM_001011988.1		299805	58865551	NM_001011988.1	Cnot2	NP_001011988.1	ILMN_1376843	0003060025	S	1440	TGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCAT	7	-	55826366-55826415	7q22	Rattus norvegicus CCR4-NOT transcription complex, subunit 2 (Cnot2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666436-S	ILMN_270727	LOC682948	XM_001063823.1	XM_001063823.1		682948	109512527	XM_001063823.1	LOC682948	XP_001063823.1	ILMN_1360544	0002850168	S	446	TCTTCCAAGTAGTAGGGTATCAAACCAGGAGGCCCAGTAAGGTGGGGGCC					PREDICTED: Rattus norvegicus similar to Intraflagellar transport 52 homolog (Protein NGD5 homolog) (LOC682948), mRNA.					
Rattus norvegicus	RefSeq	GI_47577304	ILMN_268954	OLR40	NM_001000127.1	NM_001000127.1		293197	47577304	NM_001000127.1	Olr40	NP_001000127.1	ILMN_1650463	0005890204	S	902	AGGAAATCAGGCAGCACCTGGTAAGGTCATTCCTGAGTGCAGGCCCGTGA				1q32	Rattus norvegicus olfactory receptor 40 (Olr40), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-160170992-160170042_ORF; Olr40	ratchr1-160170992-160170042_ORF; Olr40
Rattus norvegicus	RefSeq	GI_13929117-S	ILMN_290506	NFE2L2	NM_031789.1	NM_031789.1		83619	13929117	NM_031789.1	Nfe2l2	NP_113977.1	ILMN_1372879	0001450097	S	1794	GCAGCAGACCAGAGATGGCAACGTGTTCCTTGTTCCCAAGAGCAAGAAGC	3	-	58367156-58367205	3q23	Rattus norvegicus nuclear factor, erythroid derived 2, like 2 (Nfe2l2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that modulates the frequency, rate or extent of embryonic development [goid 45995] [evidence ISS]; Any process that modulates the frequency, rate or extent of embryonic development [goid 45995] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that modulates the frequency, rate or extent of embryonic development [goid 45995] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that modulates the frequency, rate or extent of embryonic development [goid 45995] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643478-S	ILMN_267049	TM4SF1_PREDICTED	XM_001060042.1	XM_001060042.1		295061	109466689	XM_001060042.1	Tm4sf1_predicted	XP_001060042.1	ILMN_1361672	0000780619	S	1037	AGTAATAAACGGAGTGCTTGGGGGCACGTGTGGCTATTGCTGCTCTCGCC				2q31	PREDICTED: Rattus norvegicus transmembrane 4 superfamily member 1 (predicted) (Tm4sf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659861-S	ILMN_293954	LOC360888	XM_001061895.1	XM_001061895.1		360888	109499156	XM_001061895.1	LOC360888	XP_001061895.1	ILMN_1366392	0005290040	S	2260	CTGTGGAATGCTGGGTTTCGGCAGTGGACTTGGCGTGCCTTCCCATGATT					PREDICTED: Rattus norvegicus similar to lin-9 homolog (LOC360888), mRNA.					
Rattus norvegicus	RefSeq	GI_62652050-S	ILMN_49778	DSPG3_PREDICTED	XM_235083.3	XM_235083.3		314772	109480507	XM_235083.3	Dspg3_predicted	XP_235083.3	ILMN_1359612	0006450673	S	1199	CGTAAGGCGCTAGAGGATATTCGACTGGATGGAAACCCGATCAACCTCAG	7	+	35197790-35197839	7q13	PREDICTED: Rattus norvegicus dermatan sulphate proteoglycan 3 (predicted) (Dspg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540629-S	ILMN_262569	FABP7	NM_030832.1	NM_030832.1		80841	13540629	NM_030832.1	Fabp7	NP_110459.1	ILMN_1361259	0006130110	S	416	GGCAAAATGGTTGTGACTCTCACCTTTGGGGATGTCGTTGCTGTTCGCTG	20	+	36814024-36814037:36815878-36815913	20q11	Rattus norvegicus fatty acid binding protein 7, brain (Fabp7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The creation of greater cell numbers in the forebrain due to cell division of progenitor cells [goid 21846] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence IMP]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence TAS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661634-S	ILMN_282863	RGD1306787_PREDICTED	XM_001066752.1	XM_001066752.1		305968	109502609	XM_001066752.1	RGD1306787_predicted	XP_001066752.1	ILMN_1361585	0003990398	S	2646	GCTAGGTGCAGAAAAAGCAGGGGACATTGCCACCTACATGTCGAGCGCGT				15p12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21616 (predicted) (RGD1306787_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641023-S	ILMN_287246	RGD1308929_PREDICTED	XM_001067261.1	XM_001067261.1		361614	109462519	XM_001067261.1	RGD1308929_predicted	XP_001067261.1	ILMN_1350804	0006290064	S	1934	GGAGGGAAGACACTGGGGAAGTAGTGTGAAGAAGGGCAGGAGGGTGCTCA				1q32	PREDICTED: Rattus norvegicus LOC361614 (predicted) (RGD1308929_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655287-S	ILMN_278671	LOC363266	XR_005463.1	XR_005463.1		363266	109486289	XR_005463.1	LOC363266		ILMN_1351969	0001190091	S	2437	TTCGTACATGGCTAAGTTCTTTAAGGATGTGGAGGACACCTGTCTGCGGC	9	+	82215482-82215531	9q34	PREDICTED: Rattus norvegicus similar to HIV-1 Rev binding protein (LOC363266), misc RNA.					
Rattus norvegicus	RefSeq	GI_47577942-S	ILMN_267534	OLR1126	NM_001000880.1	NM_001000880.1		405179	47577942	NM_001000880.1	Olr1126	NP_001000880.1	ILMN_1370515	0000450184	S	479	GTCTCATGATGTTGTGGCTGTCCTTCTGCAAAAACTTGGAAATCCCACAC	8	-	17037954-17038003	8q13	Rattus norvegicus olfactory receptor 1126 (Olr1126), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1126	Olr1126
Rattus norvegicus	RefSeq	GI_62653237-S	ILMN_281651	CWC15	NM_001024987.1	NM_001024987.1		300361	68163412	NM_001024987.1	Cwc15	NP_001020158.1	ILMN_1370601	0002350750	S	600	CGCATGGAAAACATTCTGAGTGGAAACCCTCTCCTGAATCTCACGGGCCC	8	+	11256179-11256228	8q11	Rattus norvegicus CWC15 homolog (S. cerevisiae) (Cwc15), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]	MGC109502	MGC109502
Rattus norvegicus	RefSeq	GI_62652003-S	ILMN_70383	SCYL2_PREDICTED	XM_235050.4	XM_235050.4		314717	109480427	XM_235050.4	Scyl2_predicted	XP_235050.3	ILMN_1354135	0002900075	S	2977	GGCAACCCTTTCTTCAACCCACAGAGCTTCGCACAGCCACCACCAACTAC	7	-	26431666-26431715	7q13	PREDICTED: Rattus norvegicus SCY1-like 2 (S. cerevisiae) (predicted) (Scyl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090442-S	ILMN_291073	SLC25A19	NM_001007674.1	NM_001007674.1		303676	56090442	NM_001007674.1	Slc25a19	NP_001007675.1	ILMN_1363587	0003450039	S	1231	TTGCACTGTAGAAAGAAGGCCGTGGGGAAGGAGCCTGGTGCCTGGTGTGT	10	-	105694721-105694770	10q32.3	Rattus norvegicus solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 (Slc25a19), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC93911	MGC93911
Rattus norvegicus	RefSeq	GI_62651628-S	ILMN_51258	NACA_PREDICTED	XM_213821.3	XM_213821.3		288770	109480120	XM_213821.3	Naca_predicted	XP_213821.2	ILMN_1375140	0004760129	S	6174	GACGCCGACTGTCCAAGAGGAGAGCGAAGAAGAGGAGGTTGATGAAACGG	7	+	1341943-1341979:1342110-1342122	7q11	PREDICTED: Rattus norvegicus nascent-polypeptide-associated complex alpha polypeptide (predicted) (Naca_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57528293-S	ILMN_286631	RGD1311458	NM_001009678.1	NM_001009678.1		303948	57528293	NM_001009678.1	RGD1311458	NP_001009678.1	ILMN_1359497	0000050215	S	1616	AATCTGAGAGGGGGCGGTGGAAGTGAAACCGGCCTGCGGACGAAGAGACA	11	-	57497291-57497340	11q21	Rattus norvegicus similar to cDNA sequence BC027231; hypothetical protein MGC27931 (RGD1311458), mRNA.				MGC95106	MGC95106
Rattus norvegicus	RefSeq	GI_62639272-S	ILMN_281802	LOC687215	XM_001077552.1	XM_001077552.1		687215	109461504	XM_001077552.1	LOC687215	XP_001077552.1	ILMN_1358094	0002030441	S	868	GCAGGCAAAATACCCTCACCATACCAGATAAACTTCTTGTCCCGCTGTGT					PREDICTED: Rattus norvegicus similar to Cytochrome P450 2B12 (CYPIIB12) (LOC687215), mRNA.			Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647185-S	ILMN_54531	LOC502762	XM_578260.1	XM_578260.1		502762	62647185	XM_578260.1	LOC502762	XP_578260.1	ILMN_1366575	0000780538	S	231	GACTGCATGGGTAATGGATTTGCAGGTACACATTGTGGGACCTTGATGCC					PREDICTED: Rattus norvegicus similar to Crumbs protein homolog 1 precursor (LOC502762), mRNA.					
Rattus norvegicus	RefSeq	GI_13540704-S	ILMN_299816	PDK2	NM_030872.1	NM_030872.1		81530	13540704	NM_030872.1	Pdk2	NP_110499.1	ILMN_1355842	0001780672	S	2088	AGCCAGTTTTGTAATCTCAGATGCCTCACCCTTGCCCTCCGCACACAGGG	10	-	83710516-83710565	10q31	Rattus norvegicus pyruvate dehydrogenase kinase, isozyme 2 (Pdk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657746-A	ILMN_291698	BACE2	NM_001002802.1	NM_001002802.1		288227	50657389	NM_001002802.1	Bace2	NP_001002802.1	ILMN_1376470	0004060215	S	1235	ACGTGGTCTTTGACAGAGCTCAGAGGAGGGTGGGCTTTGCAGTGAGTCCC	11	+	37415674-37415723	11q12	Rattus norvegicus beta-site APP-cleaving enzyme 2 (Bace2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of beta-amyloid [goid 42985] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of beta-amyloid [goid 42985] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658317-S	ILMN_64741	RGD1565374_PREDICTED	XM_573339.2	XM_573339.2		498128	109494944	XM_573339.2	RGD1565374_predicted	XP_573339.2	ILMN_1351274	0000460072	S	442	GTCAAGAGCAGCATCCAGACCGGAAATGACAGGCTGAAGACAGTGCCAGA	12	-	2487623-2487672	12p12	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC199675 (predicted) (RGD1565374_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661195-S	ILMN_66157	LOC498476	XM_573733.1	XM_573733.1		498476	62661195	XM_573733.1	LOC498476	XP_573733.1	ILMN_1362957	0006450093	S	694	ACAGACCAGGACTACATCTCTCTGTGACAGAACTGTCCACCAGGAGCACT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930503E14 (LOC498476), mRNA.					
Rattus norvegicus	RefSeq	GI_62717870-S	ILMN_52962	LOC501240	XM_580179.1	XM_580179.1		501240	62717870	XM_580179.1	LOC501240	XP_580179.1	ILMN_1365961	0003610594	S	67	CATGGTAAAACATCCAAAACCCTCAAGACTGGCCGAGGGAACACAGGAAG					PREDICTED: Rattus norvegicus LOC501240 (LOC501240), mRNA.					
Rattus norvegicus	RefSeq	GI_27545435-S	ILMN_263971	OLR1082	NM_173335.1	NM_173335.1		287002	27545435	NM_173335.1	Olr1082	NP_775457.1	ILMN_1372799	0002260102	S	814	GCTGCAAGTGCTTCGGTCATGTATACTGTGGTCACCCCCATGCTGAACCC	7	-	12192766-12192815	7q11	Rattus norvegicus olfactory receptor 1082 (Olr1082), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661720-S	ILMN_57515	NUDT15_PREDICTED	XM_214236.3	XM_214236.3		290365	109501876	XM_214236.3	Nudt15_predicted	XP_214236.1	ILMN_1358826	0004540315	S	191	GGGAAGAGGCTGGGCTTCGCCTGAAAAATGTGCGCTTTGCTTCGGTGGTA	15	-	54173685-54173734	15p11	PREDICTED: Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 15 (predicted) (Nudt15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667567-S	ILMN_69464	LOC503481	XM_579038.1	XM_579038.1		503481	62667567	XM_579038.1	LOC503481	XP_579038.1	ILMN_1349694	0000540601	S	1111	TCCGGCTGTGTGCTGAGGATTGTGGTTGGTGGTGGAGAGCCTTTTTAACC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC503481), mRNA.					
Rattus norvegicus	RefSeq	GI_47575900-S	ILMN_270500	OLR145	NM_001000545.1	NM_001000545.1		365331	47575900	NM_001000545.1	Olr145	NP_001000545.1	ILMN_2038790	0006520576	S	677	CCGTGCTTGCTATTGCCTCCAAGGAAGAAAGGCTGAAGACTCTGAACACA	1	-	161912542-161912591	1q32	Rattus norvegicus olfactory receptor 145 (Olr145), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr145	Olr145
Rattus norvegicus	RefSeq	GI_47575900	ILMN_270500	OLR145	NM_001000545.1	NM_001000545.1		365331	47575900	NM_001000545.1	Olr145	NP_001000545.1	ILMN_1370323	0005360609	S	777	CGTGTCCATGGCTGCTCGCTATGGGAGGCATGCCCCACGCTATGTGCATA	1	-	161912442-161912491	1q32	Rattus norvegicus olfactory receptor 145 (Olr145), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr145	Olr145
Rattus norvegicus	RefSeq	GI_62667550-S	ILMN_68581	LOC501663	XM_580225.1	XM_580225.1		501663	62667550	XM_580225.1	LOC501663	XP_580225.1	ILMN_1357431	0001500086	S	1090	AGTATGGACCCCCGCAGGGCAAAGCTTGCTAGGGAATACCTCTGTGCTAG					PREDICTED: Rattus norvegicus LOC501663 (LOC501663), mRNA.					
Rattus norvegicus	RefSeq	GI_62661998-S	ILMN_50044	LOC364429	XM_577451.1	XM_577451.1		364429	62661998	XM_577451.1	LOC364429	XP_577451.1	ILMN_1350526	0003170605	S	286	CGCCAGGCAAGCTCTACACACTGGAAACTTACGTACCCATTACCACGTTC					PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC364429), mRNA.					
Rattus norvegicus	RefSeq	GI_62667084-S	ILMN_302803	RNF12	NM_001024892.1	NM_001024892.1		317241	67846063	NM_001024892.1	Rnf12	NP_001020063.1	ILMN_1354734	0002480121	S	1675	GATGGTCGACATAGGGCTCCAGTCGCATTTGATGAAAGTGGCTCTCTGCC	X	-	91969859-91969908	Xq31	Rattus norvegicus ring finger protein 12 (Rnf12), mRNA.			Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649918-S	ILMN_296166	TMCO4	NM_001034949.1	NM_001034949.1		500573	77917597	NM_001034949.1	Tmco4	NP_001030121.1	ILMN_1367305	0006520181	S	1236	CCCAGGAGGCTCTCAAGTACACCGTGCTCTCTGGTATCGTGGCTGCTCTA	5	+	157846703-157846735:157847771-157847787	5q36	Rattus norvegicus transmembrane and coiled-coil domains 4 (Tmco4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Tmco4; MGC124660	Tmco4; MGC124660
Rattus norvegicus	RefSeq	GI_34854682-S	ILMN_55519	RFPL4_PREDICTED	XM_218194.3	XM_218194.3		292583	109458101	XM_218194.3	Rfpl4_predicted	XP_218194.3	ILMN_1373572	0001780273	S	891	GTATCTGTCCCGTGATGAATCCAAGCATTTTCGGGCTTCCAGTTAACCCC	1	+	67471112-67471161	1q12	PREDICTED: Rattus norvegicus ret finger protein-like 4 (predicted) (Rfpl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655266-S	ILMN_295176	RGD1566037_PREDICTED	XR_007794.1	XR_007794.1		367303	109487380	XR_007794.1	RGD1566037_predicted		ILMN_1367493	0001690373	S	512	TGGGCTTGATGTAATGGATGCTGGCCCGGGAAGTACTCTGCATACGAGGT				9q34	PREDICTED: Rattus norvegicus similar to Ribosomal protein SA (predicted) (RGD1566037_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34878804-S	ILMN_49623	RGD1560523_PREDICTED	XM_573428.2	XM_573428.2		498211	109497758	XM_573428.2	RGD1560523_predicted	XP_573428.1	ILMN_1361968	0003120487	S	1014	GCTGCTCCTTGGGTGGCAAAATCCCTTGTTAAAGGAGGTCTGTGCAGGAG	13	-	16278683-16278732	13p13	PREDICTED: Rattus norvegicus similar to S-adenosylmethionine synthetase gamma form (Methionine adenosyltransferase) (predicted) (RGD1560523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659162-S	ILMN_49623	RGD1560523_PREDICTED	XM_573428.2	XM_573428.2		498211	109497758	XM_573428.2	RGD1560523_predicted	XP_573428.1	ILMN_1364192	0006400025	S	2308	CCAGCTTCCTTCAGAGAGCAGTGCTTTTGGTGGGGAGGAGGAAATCCCTT	13	-	16277389-16277438	13p13	PREDICTED: Rattus norvegicus similar to S-adenosylmethionine synthetase gamma form (Methionine adenosyltransferase) (predicted) (RGD1560523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663293-S	ILMN_285768	LOC679096	XM_001054685.1	XM_001054685.1		679096	109505509	XM_001054685.1	LOC679096	XP_001054685.1	ILMN_1364284	0003130091	S	180	CCCAAAGGATGTGAAGAGGGGGCAGAGCAACACCAGGAGGAAAACTGATG					PREDICTED: Rattus norvegicus similar to vitamin A-deficient testicular protein 11-like (LOC679096), mRNA.					
Rattus norvegicus	RefSeq	GI_6981697-S	ILMN_278470	VAV1	NM_012759.1	NM_012759.1		25156	6981697	NM_012759.1	Vav1	NP_036891.1	ILMN_1348914	0000770100	S	2637	AGGATGCCAGCAGGGTTGAGGGGCTGTGAGCTGTTCTCATTGGCAGAGGA	Un|NW_047936.1	+	208092-208141		Rattus norvegicus vav 1 oncogene (Vav1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence TAS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rac family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 30676] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Vav	Vav
Rattus norvegicus	RefSeq	GI_62653850	ILMN_50631	RGD1565416_PREDICTED	XM_236367.4	XM_236367.4		315776	109483589	XM_236367.4	RGD1565416_predicted	XP_236367.3	ILMN_1650253	0004060176	S	8136	GTTGTTCTCAGACACCTTTACTCTTTGTCCTCCAAGACTGCTCCAGGGCC	8	-	71532778-71532827	8q24	PREDICTED: Rattus norvegicus similar to talin 2 (predicted) (RGD1565416_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42475952-S	ILMN_289940	ATP6V0C	NM_130823.2	NM_130823.2		170667	42475952	NM_130823.2	Atp6v0c	NP_570836.1	ILMN_1363169	0003060450	S	1013	TAGTAGACTGTTGCCTTGTGGGGTTCCTGTTGCTGAGACTCCTTGGATGG	10	-	13415759-13415808	10q12	Rattus norvegicus ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (Atp6v0c), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol [goid 5773] [evidence IEA]; The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell [goid 5774] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6754] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate [goid 42625] [evidence NAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	Atp6l	Atp6l
Rattus norvegicus	RefSeq	GI_62659524-S	ILMN_54930	LOC497690	XM_579446.1	XM_579446.1		497690	62659524	XM_579446.1	LOC497690	XP_579446.1	ILMN_1366385	0005890128	S	4732	TAGAAGAGCAGGCCGAGAATGCTCAGGACAGTGGGGTGGAGCTACTCAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_021684 (LOC497690), mRNA.					
Rattus norvegicus	RefSeq	GI_47576380-S	ILMN_293908	OLR1557	NM_001000050.1	NM_001000050.1		288190	47576380	NM_001000050.1	Olr1557	NP_001000050.1	ILMN_1365909	0004560369	S	686	AGTCTGACAAGGGTGTAAGGAAAGCTTTCTCTACCTGTGGAGCCCATTTC	11	-	42319720-42319769	11q12	Rattus norvegicus olfactory receptor 1557 (Olr1557), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1557	Olr1557
Rattus norvegicus	RefSeq	GI_62660603-A	ILMN_287711	ABLIM2	NM_001001514.2	NM_001001514.2		360958	50355686	NM_001001514.2	Ablim2	NP_001001514.1	ILMN_1376340	0006400044	S	2225	CTGTGCTAGGCACTGGGGCACAGAGTGTCTGGGATGTGAGTGAAAGGCTT	14	-	80500171-80500220	14q21	Rattus norvegicus actin binding LIM protein family, member 2 (Ablim2), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642956-S	ILMN_69674	ZFP131	XM_227104.4	XM_227104.4		310375	109464425	XM_227104.4	Zfp131	XP_227104.4	ILMN_1353216	0004540435	S	2653	CTAACTAGTGGCTACAAATGCTGTCCCCACAACAGAAACGGTGGTGGCAG	2	-	51817685-51817734	2q16	PREDICTED: Rattus norvegicus zinc finger protein 131 (Zfp131), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_28212241-S	ILMN_53703	TAAR7B	NM_175586.2	NM_175586.2		294126	82524837	NM_175586.2	Taar7b	NP_783176.2	ILMN_1367120	0006770717	S	866	ACTTCATTGACTCCATCATTGACGCCTTCCTTGGGTTTGTCACGCCCACG	1	-	21967180-21967229	1p12	Rattus norvegicus trace-amine-associated receptor 7b (Taar7b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	TA12	TA12
Rattus norvegicus	RefSeq	GI_62666315-S	ILMN_68577	LOC499478	XM_574801.1	XM_574801.1		499478	62666315	XM_574801.1	LOC499478	XP_574801.1	ILMN_1353620	0005340400	S	295	CCACATGGGCATCCAACCCAGCAAGGCGGCAATCACTGGGCTAAATCTGA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L26 (LOC499478), mRNA.					
Rattus norvegicus	RefSeq	GI_62655254-S	ILMN_52548	LOC501169	XM_576594.1	XM_576594.1		501169	62655254	XM_576594.1	LOC501169	XP_576594.1	ILMN_1349458	0002370056	S	324	CCAACTTTCACAGATGCCTGGTACCTTCAGTACGTGGCCCAAACTGCAGC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC501169), mRNA.					
Rattus norvegicus	RefSeq	GI_62660912-S	ILMN_61991	LOC501931	XM_577357.1	XM_577357.1		501931	62660912	XM_577357.1	LOC501931	XP_577357.1	ILMN_1365919	0000630059	S	228	CTGAAAAACCGGCTGGACAACATTCAGCAGCTCGTCCTTTCTGCCCGGAA					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S28 (LOC501931), mRNA.					
Rattus norvegicus	RefSeq	GI_62718496-S	ILMN_64527	LOC291510	XM_225832.3	XM_225832.3		291510	62718496	XM_225832.3	LOC291510	XP_225832.3	ILMN_1358219	0005220372	S	2088	GCAGAAGAACGCCGCACAAGTAGTGAGTTTGAAACTTCGGAGGTTCCCAC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC291510), mRNA.					
Rattus norvegicus	Unigene	Rn.8461	ILMN_161253	RN.8461	Rn.8461		Rn.8461		62918866	DN935439			ILMN_1530462	0006370154	S	699	TTCAATGCCTAATGAAGAAGCTGAAATCCCTTTCTAATTGGTAGATTAAG					AGENCOURT_50136751 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone IMAGE:7936526 5', mRNA					
Rattus norvegicus	RefSeq	GI_62655163-S	ILMN_69874	LOC316457	XM_237217.4	XM_237217.4		316457	109486213	XM_237217.4	LOC316457	XP_237217.4	ILMN_1358197	0002810121	S	6574	CTATAGATTGGCTTCAGACTCTCCATAACTTCAGGGTCAAAGCCCCTTGC	9	+	63890776-63890825	9q32	PREDICTED: Rattus norvegicus similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III isoform 2 (LOC316457), mRNA.					
Rattus norvegicus	RefSeq	GI_62654976-S	ILMN_267557	TGFBRAP1_PREDICTED	XM_001060570.1	XM_001060570.1		301373	109487057	XM_001060570.1	Tgfbrap1_predicted	XP_001060570.1	ILMN_1365395	0006290358	S	2309	TCACAGGGGCTATGAGGGACAGCATCCACGCCAGGAGGACCACACAGGTG				9q22	PREDICTED: Rattus norvegicus transforming growth factor, beta receptor associated protein 1 (predicted) (Tgfbrap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18266691-S	ILMN_283939	SELENBP1	NM_080892.1	NM_080892.1		140927	18266691	NM_080892.1	Selenbp1	NP_543168.1	ILMN_1366203	0005900035	S	1436	GCTTCGTTACCCAGGGGGTGATTGCAGTTCTGACATCTGGATCTGAAGGC	2	-	189840583-189840632	2q34	Rattus norvegicus selenium binding protein 1 (Selenbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]	Selenbp2	Selenbp2
Rattus norvegicus	RefSeq	GI_62647641-S	ILMN_262644	CTNNA2_PREDICTED	XM_001070677.1	XM_001070677.1		297357	109473730	XM_001070677.1	Ctnna2_predicted	XP_001070677.1	ILMN_1354038	0006900427	S	3791	GAAGACAGGAAACATTCCTTGGAGACACTTGGATCCTTCTGCGGACCCCG				4q33	PREDICTED: Rattus norvegicus catenin (cadherin associated protein), alpha 2 (predicted) (Ctnna2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647643-S	ILMN_262644	CTNNA2_PREDICTED	XM_001070677.1	XM_001070677.1		297357	109473730	XM_001070677.1	Ctnna2_predicted	XP_001070677.1	ILMN_1367200	0002640450	S	2758	GCAGGGCTAGTCAACTTTCTACCCACCTCCCAACCTGTGCTGAGGGAGCT				4q33	PREDICTED: Rattus norvegicus catenin (cadherin associated protein), alpha 2 (predicted) (Ctnna2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850623-S	ILMN_272065	LEO1	NM_001005548.1	NM_001005548.1		300837	53850623	NM_001005548.1	Leo1	NP_001005548.1	ILMN_1374289	0000070154	S	1822	AACCGCTACAAAGGAGGCATCCGCGAGGAACGGGCCAGAATCTACTCCTC	8	+	80283381-80283405:80285563-80285587	8q24	Rattus norvegicus Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (Leo1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95290	MGC95290
Rattus norvegicus	RefSeq	GI_61557176-S	ILMN_298756	FHL4	NM_001013172.1	NM_001013172.1		314678	61557176	NM_001013172.1	Fhl4	NP_001013190.1	ILMN_1352295	0002570025	S	1305	TCCTGTTTCTGTGCTGCACCAACCACAGGGGATGAGTGAGCTTTCACCTC	7	+	20748316-20748365	7q13	Rattus norvegicus four and a half LIM domains 4 (Fhl4), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC116389	MGC116389
Rattus norvegicus	RefSeq	GI_47577142-S	ILMN_276679	OLR753	NM_001000921.1	NM_001000921.1		405237	47577142	NM_001000921.1	Olr753	NP_001000921.1	ILMN_1370956	0002100059	S	753	TGGACCCTGCATTTTCATCTATCTGTGGCCAGTTAGCATCACTTGGGTGG	3	+	96919498-96919547	3q34	Rattus norvegicus olfactory receptor 753 (Olr753), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr753	Olr753
Rattus norvegicus	RefSeq	GI_25742679-S	ILMN_288592	KEG1	NM_134330.1	NM_134330.1		171179	25742679	NM_134330.1	Keg1	NP_599157.1	ILMN_1355872	0006590132	S	1887	GTTGGGATGAGGAAGGAGGATGGGAAGCAGAACTGGGGTGCTGAAGGGAG	1	+	215795319-215795368	1q43	Rattus norvegicus kidney expressed gene 1 (Keg1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence NAS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]		Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence NAS]; Catalysis of the reaction: acyl-CoA + glycine = CoA + N-acylglycine [goid 47961] [evidence IEA]	HP33	HP33
Rattus norvegicus	RefSeq	GI_62662327-S	ILMN_62618	LOC502057	XM_577490.1	XM_577490.1		502057	62662327	XM_577490.1	LOC502057	XP_577490.1	ILMN_1357334	0001170711	S	155	AGGAACGACCCACACAAAACTGGATGAGAAGGTTTCTGCTCAAAGGAACC				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502057), mRNA.					
Rattus norvegicus	RefSeq	GI_62648247-S	ILMN_59533	LOC500346	XM_575698.1	XM_575698.1		500346	62648247	XM_575698.1	LOC500346	XP_575698.1	ILMN_1371555	0006370070	S	1701	GTCATACAGACCCTAAGAGAACACAAATGCCAGCGCAGGTTACTATATCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500346), mRNA.					
Rattus norvegicus	RefSeq	GI_62665427	ILMN_48322	LOC307926	XM_226575.3	XM_226575.3		307926	62665427	XM_226575.3	LOC307926	XP_226575.2	ILMN_1649780	0006380138	S	1247	GGCAGGGCATCCCGTCCACTGTTGAGCATTCAGCATTCAGCATTCGGCAT				19q12	PREDICTED: Rattus norvegicus similar to 1700054N08Rik protein (LOC307926), mRNA.					
Rattus norvegicus	RefSeq	GI_16758195-S	ILMN_280656	PLCL1	NM_053456.1	NM_053456.1		84587	16758195	NM_053456.1	Plcl1	NP_445908.1	ILMN_1351127	0002680465	S	4653	GGGCCGGGAGTATGGAATTCATTTTCTATTACCAGTGGTGGGCAGATCCA	9	+	54545646-54545695	9q31	Rattus norvegicus phospholipase C-like 1 (Plcl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651637-S	ILMN_296017	APOF	NM_001024351.1	NM_001024351.1		500761	66730496	NM_001024351.1	Apof	NP_001019522.1	ILMN_1351292	0006940075	S	863	CTCAGCCAGAGACCCGGAAGGATGCCCCCACATATAGAGATGACGTGGAA	7	+	1563617-1563666	7q11	Rattus norvegicus apolipoprotein F (Apof), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]	Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657530-S	ILMN_54558	BTG3_PREDICTED	XM_346415.2	XM_346415.2		360251	62657530	XM_346415.2	Btg3_predicted	XP_346416.1	ILMN_1364252	0005360324	S	754	GTGACCGGAATCACTGGATTAATCCTCACATGTTAGCACCTCACTAGCTC					PREDICTED: Rattus norvegicus B-cell translocation gene 3 (predicted) (Btg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20301981-S	ILMN_267272	UNC13D	NM_138844.1	NM_138844.1		192177	20301981	NM_138844.1	Unc13d	NP_620199.1	ILMN_1351794	0000510091	S	3897	TGGCAGGAAGGAGGGCAGGCACAGATGGAGAGCCACACACAGGAGAGTTT	10	-	106170545-106170594	10q32.3	Rattus norvegicus unc-13 homolog D (C. elegans) (Unc13d), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The formation of nodular inflammatory lesions, usually small or granular, firm, persistent, well-structured, and containing compactly grouped T lymphocytes and modified phagocytes such as epithelioid cells, giant cells, and other macrophages. Granuloma formation represents a chronic inflammatory response initiated by various infectious and noninfectious agents. The center of a granuloma consists of fused macrophages, which can become necrotic [goid 2432] [evidence ISS]; The process by which germinal centers form. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation [goid 2467] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence ISS]; The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a natural killer cell [goid 43320] [evidence ISS]; The regulated release of a substance by a cell, a group of cells, or a tissue [goid 46903] [evidence IEP]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Unc13h4; Munc13-4	Unc13h4; Munc13-4
Rattus norvegicus	RefSeq	GI_52138604-S	ILMN_274140	B4GALNT1	NM_022860.2	NM_022860.2		64828	52138604	NM_022860.2	B4galnt1	NP_074051.1	ILMN_1373152	0000110273	S	2150	CAGCACCATGTGTCCCGGCTCCAACATACCCCTACAGAAAGCACTGTGAC	7	+	67127609-67127658	7q22	Rattus norvegicus beta-1,4-N-acetyl-galactosaminyl transferase 1 (B4galnt1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The chemical reactions and pathways resulting in the formation of ceramide oligosaccharides carrying in addition to other sugar residues, one or more sialic acid residues [goid 1574] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ceramide oligosaccharides carrying in addition to other sugar residues, one or more sialic acid residues [goid 1574] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; Covalent attachment of a glycosyl residue to a lipid molecule [goid 30259] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + (N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide = UDP + N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide [goid 3947] [evidence IEA]; Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an oligosaccharide [goid 8376] [evidence IDA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]	MGC93424; Galgt1; GalNAc-T	MGC93424; Galgt1; GalNAc-T
Rattus norvegicus	RefSeq	GI_62646575-S	ILMN_69932	LOC499959	XM_575308.1	XM_575308.1		499959	62646575	XM_575308.1	LOC499959	XP_575308.1	ILMN_1368897	0003060711	S	713	GGGGGGCGCCAGAACCTGGATTTGGTTTTCTAAATAAAAATGGAAAAGCA					PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2S (LOC499959), mRNA.					
Rattus norvegicus	RefSeq	GI_51948467-S	ILMN_302553	TTC12	NM_001004246.1	NM_001004246.1		300696	51948467	NM_001004246.1	Ttc12	NP_001004246.1	ILMN_1352593	0003610041	S	1903	TGGCAACTGTATGGAAGTGCCCAGTGCAGCCTCTTCCTTGCTGAAGACAG	8	-	52736861-52736910	8q23	Rattus norvegicus tetratricopeptide repeat domain 12 (Ttc12), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94947	MGC94947
Rattus norvegicus	RefSeq	GI_34880447-S	ILMN_69616	RGD1566099_PREDICTED	XM_341128.2	XM_341128.2		360851	109497958	XM_341128.2	RGD1566099_predicted	XP_341129.1	ILMN_1374368	0002570136	S	323	TGCAGAGAGGTGCCTGCTGTGGTTCTGCCTGCAGACACTGTCCATATGGC	13	-	52165174-52165186:52166706-52166742	13q13	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1566099_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656923-S	ILMN_55208	PCGF2_PREDICTED	XM_213447.4	XM_213447.4		287662	109488864	XM_213447.4	Pcgf2_predicted	XP_213447.2	ILMN_1357855	0002640014	S	1188	ACTTCGAACTGCCTGCAGACGCCATCCTCCACCAGCAGGGGGCGCAAGAT	10	-	86439342-86439391	10q31	PREDICTED: Rattus norvegicus polycomb group ring finger 2 (predicted) (Pcgf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638671-S	ILMN_296991	PHF10	NM_001024747.1	NM_001024747.1		292404	67078517	NM_001024747.1	Phf10	NP_001019918.1	ILMN_1369048	0006350093	S	1485	CCCCCAACACCCAGGAAAGTGGGCAGAAGGGGGAAAAACAGCAAAGAGGG	1	-	53874304-53874353	1q12	Rattus norvegicus PHD finger protein 10 (Phf10), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657085-S	ILMN_64737	DHX8	XM_213460.4	XM_213460.4		287727	109489054	XM_213460.4	Dhx8	XP_213460.4	ILMN_1355270	0005890463	S	3828	CTCTGACCCAACCAAGCTAAGCAAGCAGAAGAAGCAGCAGCGCCTGGAGC	10	+	90805270-90805319	10q32.1	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 8 (Dhx8), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642520-S	ILMN_68357	LOC502392	XM_577871.1	XM_577871.1		502392	62642520	XM_577871.1	LOC502392	XP_577871.1	ILMN_1350019	0001090309	S	1005	AGAGTCATTCTGAGGCCGTGGGTGTTCGTGCGCTTGTGTGCATGTGTGGG					PREDICTED: Rattus norvegicus similar to fibroin 1 (LOC502392), mRNA.					
Rattus norvegicus	RefSeq	GI_40018591-S	ILMN_297506	HP1BP3	NM_199108.1	NM_199108.1		313647	40018591	NM_199108.1	Hp1bp3	NP_954539.1	ILMN_1362886	0002970121	S	3075	AGCTGCAGATGGCTGGGAAGTGGACTTGAGGAATGGGCTCGAATTGGTGG	5	+	157023942-157023991	5q36	Rattus norvegicus heterochromatin protein 1, binding protein 3 (Hp1bp3), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC72624	MGC72624
Rattus norvegicus	RefSeq	GI_47576358-S	ILMN_268149	OLR1543	NM_001001104.1	NM_001001104.1		406000	47576358	NM_001001104.1	Olr1543	NP_001001104.1	ILMN_1369732	0006980270	S	604	TCTGCCGTGATACAAGCCATTACCTTCATGAGTATTGCAGTCTCCTATGC	11	+	42097016-42097065	11q12	Rattus norvegicus olfactory receptor 1543 (Olr1543), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1543	Olr1543
Rattus norvegicus	RefSeq	GI_62646219-S	ILMN_264092	RGD1311678	XR_009625.1	XR_009625.1		296311	109471176	XR_009625.1	RGD1311678		ILMN_1371139	0002850711	S	2811	ATGACTGGAGTATCTTTCGGAGGGATCTGCTGCGGTTGCTGGTGGAGCCC				3q42	PREDICTED: Rattus norvegicus similar to 4921517L17Rik protein (RGD1311678), misc RNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079102-S	ILMN_293557	ISY1	NM_001014188.1	NM_001014188.1		362394	62079102	NM_001014188.1	Isy1	NP_001014210.1	ILMN_1364217	0000520082	S	1099	ACTAGGCCAAGCCAGAGCCCTTACTCTGGTGGGTGTGCTCGGTACGCCAT	4	-	122007116-122007165	4q34	Rattus norvegicus ISY1 splicing factor homolog (S. cerevisiae) (Isy1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_12018307-S	ILMN_298314	BARD1	NM_022622.1	NM_022622.1		64557	12018307	NM_022622.1	Bard1	NP_072144.1	ILMN_1365198	0002100142	S	2219	AACTGTCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGATGGCTCCTTC	9	-	70120337-70120386	9q33	Rattus norvegicus BRCA1 associated RING domain 1 (Bard1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A heterodimeric complex comprising BRCA1 and BARD1, which possesses ubiquitin ligase activity and is involved in genome maintenance, possibly by functioning in surveillance for DNA damage [goid 31436] [evidence IEA]; A heterodimeric complex comprising BRCA1 and BARD1, which possesses ubiquitin ligase activity and is involved in genome maintenance, possibly by functioning in surveillance for DNA damage [goid 31436] [evidence ISS]; A heterodimeric complex comprising BRCA1 and BARD1, which possesses ubiquitin ligase activity and is involved in genome maintenance, possibly by functioning in surveillance for DNA damage [goid 31436] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of proteins from the nucleus into the cytoplasm [goid 46826] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of proteins from the nucleus into the cytoplasm [goid 46826] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57526932-S	ILMN_301410	RGD1311805	NM_001009638.1	NM_001009638.1		291784	57526932	NM_001009638.1	RGD1311805	NP_001009638.1	ILMN_1354252	0006550017	S	1936	CCAGCGTTTGCGAGGGAACCCTAACTTCACACCAGGAGAACACTGTGAGG	18	+	3725085-3725119:3725543-3725557	18p13	Rattus norvegicus similar to RIKEN cDNA 2400010D15 (RGD1311805), mRNA.				C18orf8; MGC105615	C18orf8; MGC105615
Rattus norvegicus	RefSeq	GI_51948515-S	ILMN_277436	SNUPN	NM_001004270.1	NM_001004270.1		316108	51948515	NM_001004270.1	Snupn	NP_001004270.1	ILMN_1360420	0002480112	S	802	CTACCACAAACAGACCCACTATAGCCCGGGGAGTACCCCTTTGGTGGGCT	8	+	60726155-60726204	8q24	Rattus norvegicus snurportin 1 (Snupn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence TAS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export [goid 5846] [evidence TAS]	The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with a 7-methylguanosine (m7G) moiety or derivative located at the 5' end of an RNA molecule [goid 339] [evidence TAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	MGC95000	MGC95000
Rattus norvegicus	RefSeq	GI_62660943-S	ILMN_66063	LOC498428	XM_573679.1	XM_573679.1		498428	62660943	XM_573679.1	LOC498428	XP_573679.1	ILMN_1358037	0002350017	S	0	GAAGAGGCTAGCACACGAGAATCTGCCATGCCTTTCCTTGATGTGCAGAA				14q22	PREDICTED: Rattus norvegicus similar to NADH dehydrogenase (ubiquinone) Fe-S protein 5 (LOC498428), mRNA.					
Rattus norvegicus	RefSeq	GI_56605629-S	ILMN_276991	STARD3NL	NM_001008298.1	NM_001008298.1		291182	56605629	NM_001008298.1	Stard3nl	NP_001008299.1	ILMN_1369572	0002940139	S	863	GCCAGCTGAAGTGGTGGATCTGCTCACTGCTGGATGCTGATGAGCTAGTG	17	+	53435676-53435725	17q11	Rattus norvegicus STARD3 N-terminal like (Stard3nl), mRNA.				MGC105513	MGC105513
Rattus norvegicus	RefSeq	GI_62646627-S	ILMN_270177	RGD1565588_PREDICTED	XM_001057456.1	XM_001057456.1		499969	109472887	XM_001057456.1	RGD1565588_predicted	XP_001057456.1	ILMN_1354125	0000430180	S	2209	TGCAGACGAGATGGGTAAAGGTGAGCAGTGGGGGCGTGGCTAGGACAGAT				4q11	PREDICTED: Rattus norvegicus similar to calcium binding protein P22 (predicted) (RGD1565588_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789304-S	ILMN_286862	PTPRN	NM_053881.1	NM_053881.1		116660	29789304	NM_053881.1	Ptprn	NP_446333.1	ILMN_1363020	0002190750	S	2833	ACCCTGGAGCATGTCCGTGACCAGCGACCTGGCCTTGTCCGTTCTAAGGA	9	-	74528164-74528166:74528401-74528447	9q33	Rattus norvegicus protein tyrosine phosphatase, receptor type, N (Ptprn), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IDA]; A series of molecular signals in which an ion or small molecule is formed or released into the cytosol, thereby helping relay the signal within the cell [goid 19932] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IPI]	ICA512; Ia-2	ICA512; Ia-2
Rattus norvegicus	RefSeq	GI_62644327-S	ILMN_47815	LOC502586	XM_578072.1	XM_578072.1		502586	62644327	XM_578072.1	LOC502586	XP_578072.1	ILMN_1372282	0002100411	S	381	AATTTTCCCCTGCTCCATACCTCGGAGAGAGAGGAAGGCGGGAAGCAGGC					PREDICTED: Rattus norvegicus similar to GTPase activating protein (LOC502586), mRNA.					
Rattus norvegicus	RefSeq	GI_62667349-S	ILMN_57715	LOC501637	XM_577034.1	XM_577034.1		501637	62667349	XM_577034.1	LOC501637	XP_577034.1	ILMN_1371120	0004150400	S	884	ATGCGTGCTATCGGACCACCACGGCCTAAAACTGGTCTTCAATAACAATC					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC501637), mRNA.					
Rattus norvegicus	RefSeq	GI_62079004-S	ILMN_275501	RGD1308626	NM_001014139.1	NM_001014139.1		361087	62079004	NM_001014139.1	RGD1308626	NP_001014161.1	ILMN_1360758	0004590138	S	1869	TAGTCTAAAGCGTCGCAAAGGAGACAGCCAGACGGCAGAGTTAAGCGGTC	15	+	87769849-87769898	15q22	Rattus norvegicus similar to 9630044O09Rik protein (RGD1308626), mRNA.					
Rattus norvegicus	RefSeq	GI_62649011-S	ILMN_288585	RGD1308958_PREDICTED	XM_001059736.1	XM_001059736.1		298020	109476538	XM_001059736.1	RGD1308958_predicted	XP_001059736.1	ILMN_1359361	0000450164	S	2237	GCTATCCTTGGAGCAGTGCCATTCCTGGGGACATATTGGGCAGCAGTACC				5q24	PREDICTED: Rattus norvegicus similar to chromosome 9 open reading frame 5 (predicted) (RGD1308958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_60223066-S	ILMN_272842	ZBTB38	NM_001012471.1	NM_001012471.1		315936	60223066	NM_001012471.1	Zbtb38	NP_001012489.1	ILMN_1361434	0002190181	S	3584	CTCCGATCTCTTGGAGAGTCAACCTTGCACTGATTCGGAAGACAGCGACC	8	-	101782967-101783016	8q31	Rattus norvegicus zinc finger and BTB domain containing 38 (Zbtb38), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1310136	RGD1310136
Rattus norvegicus	RefSeq	GI_62659279-S	ILMN_266893	DYRK3	NM_001024767.1	NM_001024767.1		304775	67078483	NM_001024767.1	Dyrk3	NP_001019938.1	ILMN_1349770	0005860735	S	1741	TCCTACAAATGCTTTCCAGGGACTGGGCTCCAAGCTGCCTCCAGTCGTTG	13	-	44078157-44078199:44078200-44078206	13q13	Rattus norvegicus dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 (Dyrk3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664652-S	ILMN_53008	RGD1560744_PREDICTED	XM_225701.4	XM_225701.4		307251	109506818	XM_225701.4	RGD1560744_predicted	XP_225701.4	ILMN_1366193	0002900040	S	2047	GACCACGTAGAAACCATGTAGGGGTCTCTAGCTATTCTGTGGATGGCAGC	18	-	74418987-74419036	18q12.3	PREDICTED: Rattus norvegicus similar to ring finger protein 111 (predicted) (RGD1560744_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664186-S	ILMN_69106	SRP19_PREDICTED	XM_214599.4	XM_214599.4		291685	109506425	XM_214599.4	Srp19_predicted	XP_214599.1	ILMN_1374995	0004050066	S	539	CAGTTCTGCTGGGAGAGACGTGGCATCTTTGCGTGTGAGGGAACAGCTTT	18	+	26806196-26806245	18p12	PREDICTED: Rattus norvegicus signal recognition particle 19 (predicted) (Srp19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652482-S	ILMN_48632	LOC299964	XM_235352.3	XM_235352.3		299964	62652482	XM_235352.3	LOC299964	XP_235352.3	ILMN_1350782	0000580253	S	1442	CAATGACTGGGACAACTGTCTTACCTACAGGAGGCGGAGGGTAGAAAGGG				7q33	PREDICTED: Rattus norvegicus similar to KIAA0089 (LOC299964), mRNA.					
Rattus norvegicus	RefSeq	GI_62652774-S	ILMN_265383	ADCK5	XM_001075206.1	XM_001075206.1		362943	109482487	XM_001075206.1	Adck5	XP_001075206.1	ILMN_1371644	0004200403	S	1623	GCGGCCCATGCTGCTAGTGCTGCGAAACATCAACACAGTGCGCGCTATCA				7q34	PREDICTED: Rattus norvegicus aarF domain containing kinase 5 (Adck5), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666125-S	ILMN_263543	NT5DC1_PREDICTED	XM_215405.3	XM_215405.3		294456	62666125	XM_215405.3	Nt5dc1_predicted	XP_215405.3	ILMN_1364225	0003870142	S	1652	CGAGACGGGGAAATGCAGAAGACTCCTTGGTTTATACCTGGTCCTCTAAG	20	-	38652469-38652518	20q12	PREDICTED: Rattus norvegicus 5'-nucleotidase domain containing 1 (predicted) (Nt5dc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644156	ILMN_62046	RGD1306520	XM_227573.4	XM_227573.4		310775	109465345	XM_227573.4	RGD1306520	XP_227573.4	ILMN_1650018	0006940278	S	2140	CAAGCCATAGTACAACCAGGGAAGACAAGAGAACTGAAACAGAACACTGC	2	+	202155401-202155450	2q34	PREDICTED: Rattus norvegicus similar to receptor-interacting factor 1 (RGD1306520), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646217-S	ILMN_263935	SCAND1_PREDICTED	XM_001066597.1	XM_001066597.1		362252	109471174	XM_001066597.1	Scand1_predicted	XP_001066597.1	ILMN_1352873	0003060722	S	558	CCCCGGGCTCCCTGGACTGACAGCCTACCCCGAGTTAATAAAAGTTGAAT				3q42	PREDICTED: Rattus norvegicus SCAN domain-containing 1 (predicted) (Scand1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_66730342	ILMN_287392	LOC499306	NM_001024291.1	NM_001024291.1		499306	66730342	NM_001024291.1	LOC499306	NP_001019462.1	ILMN_1530475	0005690398	S	1161	GTGTGAGTTTATCCTGTTGTTTGCCTTTGGTTTTTCTATTTAAAACACTA	1	+	208999008-208999057	1q43	Rattus norvegicus hypothetical gene supported by BC078985 (LOC499306), mRNA.					
Rattus norvegicus	RefSeq	GI_56090258-S	ILMN_301104	SAT1	NM_001007667.1	NM_001007667.1		302642	56090258	NM_001007667.1	Sat1	NP_001007668.1	ILMN_1368419	0000940273	S	795	GGCAGCAGAGGAGTGAGGTGTGCCGGTATAGACAATGACCACCTCCATTG	X	+	61637880-61637893:61637894-61637929	Xq22	Rattus norvegicus spermidine/spermine N1-acetyl transferase 1 (Sat1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups [goid 6595] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence IEA]; Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence IDA]; Interacting selectively with spermidine, N-(3-aminopropyl)-1,4-diaminobutane [goid 19809] [evidence IDA]	MGC72945; Ab2-402; SSAT; Sat	MGC72945; Ab2-402; SSAT; Sat
Rattus norvegicus	RefSeq	GI_62650886-A	ILMN_273615	ZBTB1	NM_001004444.1	NM_001004444.1		314246	52138736	NM_001004444.1	Zbtb1	NP_001004444.1	ILMN_1376714	0005420019	S	2808	GGTGCACTGAATCTAACCTTTAAGGTTGACATGGGCTCAATCTTGGCCTG	6	+	98983845-98983894	6q24	Rattus norvegicus zinc finger and BTB domain containing 1 (Zbtb1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741636-S	ILMN_281554	KARS	NM_001006967.1	NM_001006967.1		292028	55741636	NM_001006967.1	Kars	NP_001006968.1	ILMN_1355205	0005360184	S	1911	AGAAGGAAACTGCAACAGCCACCGAGACCCCAGAAAGCACAGAGGCCAGC	19	-	41927690-41927739	19q12	Rattus norvegicus lysyl-tRNA synthetase (Kars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6430] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys) [goid 4824] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC94484	MGC94484
Rattus norvegicus	RefSeq	GI_34859776-S	ILMN_262862	TMEM77	NM_001025018.1	NM_001025018.1		362011	68163478	NM_001025018.1	Tmem77	NP_001020189.1	ILMN_2039502	0002810392	S	367	GGCCTTAGCTTCCTTCCGTCGGCCCTTGTAATTTGGACATTTGCTACCTT	2	+	201852258-201852307	2q34	Rattus norvegicus transmembrane protein 77 (Tmem77), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109061	MGC109061
Rattus norvegicus	RefSeq	GI_25742732-S	ILMN_267594	P2RY1	NM_012800.1	NM_012800.1		25265	25742732	NM_012800.1	P2ry1	NP_036932.1	ILMN_1371147	0004810402	S	2966	GCCCTAACTATGATGCAGCTTCCACTGCCAAAGGCTAATGGCTTATCTCC	2	+	150465643-150465692	2q31	Rattus norvegicus purinergic receptor P2Y, G-protein coupled 1 (P2ry1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 43270] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IEA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IDA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence TAS]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	P2y1; P2y	P2y1; P2y
Rattus norvegicus	RefSeq	GI_62663612-I	ILMN_59233	ZFP307_PREDICTED	XM_574037.1	XM_574037.1		306977	62663612	XM_574037.1	Zfp307_predicted	XP_574037.1	ILMN_1375333	0005130450	S	213	CTAATGAAGTTCTGGCCTCCAAAGGGCTTAGCTCTATTTCTCTCCAGCAG				17q11	PREDICTED: Rattus norvegicus zinc finger protein 307 (predicted) (Zfp307_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981393-S	ILMN_288519	PKIB	NM_012627.1	NM_012627.1		24678	6981393	NM_012627.1	Pkib	NP_036759.1	ILMN_1354207	0002680653	S	430	GACCAAGGCCAACCGAAGAAGCCCCTAGACGAAGACAAATAAAGGCTTAG	20	+	36749755-36749796:36749797-36749804	20q11	Rattus norvegicus protein kinase inhibitor beta, cAMP dependent, catalytic (Pkib), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]	Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence IEA]	RATPKINH; Prkacn2; PKINH	RATPKINH; Prkacn2; PKINH
Rattus norvegicus	RefSeq	GI_12621141-S	ILMN_276496	RASSF9	NM_022959.1	NM_022959.1		65053	12621141	NM_022959.1	Rassf9	NP_075248.1	ILMN_1358814	0006510504	S	1604	CACAGTCAGGATTCTGAAACGACTTTGGGAGATGTGCTACTGCTGGCAAC	7	+	40541490-40541539	7q13	Rattus norvegicus Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 (Rassf9), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The lipid bilayer surrounding a vesicle transporting substances between the trans-Golgi network and other parts of the cell [goid 12510] [evidence ISS]; The lipid bilayer surrounding a vesicle transporting substances between the trans-Golgi network and other parts of the cell [goid 12510] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The directed movement of substances within a cell [goid 46907] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	P-cip1	P-cip1
Rattus norvegicus	RefSeq	GI_62659238-S	ILMN_55480	LOC498221	XM_573441.1	XM_573441.1		498221	62659238	XM_573441.1	LOC498221	XP_573441.1	ILMN_1356710	0005220601	S	300	CAGAACAAACTCTTGATGGGGCTGAAGACACGGGTCGGGAAGCGGGACAG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC498221), mRNA.					
Rattus norvegicus	RefSeq	GI_13242288-S	ILMN_52673	PDRP	NM_024384.1	NM_024384.1		79227	13242288	NM_024384.1	Pdrp	NP_077360.1	ILMN_1374988	0005130408	S	478	CGTCTTTACCAACCTGGGCTACCGAGCCTTCTCACACTGTCCTTCTGAGC				10q12	Rattus norvegicus PDRP protein (Pdrp), mRNA.					
Rattus norvegicus	RefSeq	GI_27693470-S	ILMN_56515	RGD1311994_PREDICTED	XM_223228.2	XM_223228.2		289501	109499525	XM_223228.2	RGD1311994_predicted	XP_223228.1	ILMN_1360695	0007100168	S	2469	GCACGGGCACCAGGGAGTCATCAAATTGCTAGTGCAAAGATTGGCTTCCC	14	+	16589741-16589790	14p22	PREDICTED: Rattus norvegicus hypothetical LOC289501 (predicted) (RGD1311994_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644413-S	ILMN_265652	BDH2_PREDICTED	XM_001075590.1	XM_001075590.1		295458	109467583	XM_001075590.1	Bdh2_predicted	XP_001075590.1	ILMN_1374022	0006450102	S	1370	TGGAAGACAGGCCCTCCCTAGCCACAGAGAAAAGCAAACTGGCCGGGTGA				2q43	PREDICTED: Rattus norvegicus 3-hydroxybutyrate dehydrogenase, type 2 (predicted) (Bdh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641900-S	ILMN_295582	MS4A3_PREDICTED	XM_001075551.1	XM_001075551.1		293753	109463596	XM_001075551.1	Ms4a3_predicted	XP_001075551.1	ILMN_1350662	0002940600	S	624	GGAGTCAGGAATACCCCCTGAAGAAAGCGATTCTGAGAACCTGATCACCC				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 3 (predicted) (Ms4a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641895-S	ILMN_295582	MS4A3_PREDICTED	XM_001075551.1	XM_001075551.1		293753	109463596	XM_001075551.1	Ms4a3_predicted	XP_001075551.1	ILMN_1369712	0006350465	S	465	ATCAGGTGACTGTGAAGACCGGCAAGCTCTGAAAGCCAGGGTATTGAGTG				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 3 (predicted) (Ms4a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639282-A	ILMN_280658	ZFP382	NM_144749.1	NM_144749.1		246264	21426770	NM_144749.1	Zfp382	NP_653350.1	ILMN_1376863	0002370022	S	2308	GTAAATCGAACCTCGTCGCCCACCAGAAAACTCACAAGGCAGAGACGGTG	1	+	85184525-85184572	1q21	Rattus norvegicus zinc finger protein 382 (Zfp382), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence NAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IMP]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156588; Ks1	MGC156588; Ks1
Rattus norvegicus	RefSeq	GI_62647054-S	ILMN_48371	RGD1564660_PREDICTED	XM_578232.2	XM_578232.2		502733	109471802	XM_578232.2	RGD1564660_predicted	XP_578232.2	ILMN_1358993	0003360014	S	223	GGGCGGGACAAAAGAAGCAGAACACCTTTGCATTTCGCCTGTGCTAACGG	4	-	44709200-44709230:44710178-44710196	4q21	PREDICTED: Rattus norvegicus similar to Ankyrin repeat domain protein 7 (Testis-specific protein TSA806) (predicted) (RGD1564660_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638556-S	ILMN_55518	RPS6KA2	XM_341758.3	XM_341758.3		117269	109457754	XM_341758.3	Rps6ka2	XP_341759.2	ILMN_1374937	0000070021	S	2536	GCACAAAGATGGATCTGGCCTTGGCTGTCTCTCTGTTTCCTTTGCAGCCC	1	+	47557513-47557562	1q11	PREDICTED: Rattus norvegicus ribosomal protein S6 kinase polypeptide 2 (Rps6ka2), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090191-S	ILMN_282199	ZFAND6	NM_001007630.1	NM_001007630.1		293067	56090191	NM_001007630.1	Zfand6	NP_001007631.1	ILMN_1370487	0007040546	S	1415	CTGCTGACTGCAAGTTTCTTTGCGATTACTGTTCATTGGTCTGTGTGTGC	1	-	140885789-140885838	1q31	Rattus norvegicus zinc finger, AN1-type domain 6 (Zfand6), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94805; zgc:101121	MGC94805; zgc:101121
Rattus norvegicus	RefSeq	GI_47577028-S	ILMN_281231	OLR288	NM_001000231.1	NM_001000231.1		293590	47577028	NM_001000231.1	Olr288	NP_001000231.1	ILMN_1354578	0001780053	S	906	GCTGCAAAAGGTACTGCAGCGAGCAGCCCAAGTCCTAGGAGTCTCCTCCT	1	-	200028968-200029017	1q41	Rattus norvegicus olfactory receptor 288 (Olr288), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-200179915-200178959_ORF; Olr288	ratchr1-200179915-200178959_ORF; Olr288
Rattus norvegicus	RefSeq	GI_62078576-S	ILMN_290794	GTPBP5	NM_001013924.1	NM_001013924.1		296462	62078576	NM_001013924.1	Gtpbp5	NP_001013946.1	ILMN_1366596	0003360280	S	1458	CCAGTGTTGGACAGGGGTGGGCCAGCAGTCACAGGAAGCAAAAGCAACCT	3	+	169144677-169144726	3q43	Rattus norvegicus GTP binding protein 5 (Gtpbp5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644227-S	ILMN_65490	LOC499696	XM_575022.1	XM_575022.1		499696	62644227	XM_575022.1	LOC499696	XP_575022.1	ILMN_1373787	0000610465	S	2526	CCAAGTGTGAAGCCTATGTCGCCTCATACAACTCTGAAGCTGTTCCTGAC					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC499696), mRNA.					
Rattus norvegicus	RefSeq	GI_16923963-S	ILMN_292105	CNTN1	NM_057118.1	NM_057118.1		117258	16923963	NM_057118.1	Cntn1	NP_476459.1	ILMN_1356528	0004120088	S	2974	GACCTGACGGCCAACATGACGGTAAGCTGTTCTCCACGCACAAGCACTCC	7	+	130815580-130815629	7q35	Rattus norvegicus contactin 1 (Cntn1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The process by which a methyl group is covalently attached to a molecule [goid 32259] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]	F3	F3
Rattus norvegicus	RefSeq	GI_62659832-S	ILMN_48729	LOC501874	XM_577293.1	XM_577293.1		501874	62659832	XM_577293.1	LOC501874	XP_577293.1	ILMN_1360962	0003170292	S	2194	CCCCACGAATCCGGCTAAAAGTAAAAAGACTTGTGGCTCAATCTGGGATC					PREDICTED: Rattus norvegicus similar to flocculin-like protein (LOC501874), mRNA.					
Rattus norvegicus	RefSeq	GI_62664840-I	ILMN_64310	LOC307660	XM_574201.1	XM_574201.1		307660	62664840	XM_574201.1	LOC307660	XP_574201.1	ILMN_1375569	0002350537	S	1379	AGTCCCTGAAGAGCATTTCCTCAAGGACACAGACATTTGGCATCAAGCAG				19p12	PREDICTED: Rattus norvegicus carboxylesterase 615 (LOC307660), mRNA.					
Rattus norvegicus	RefSeq	GI_62662462-S	ILMN_277235	NDUFA13_PREDICTED	XR_008769.1	XR_008769.1		290671	109504017	XR_008769.1	Ndufa13_predicted		ILMN_1372006	0006220056	S	552	GGCTTCACCGGGTACACTTAGGGCCTGAGCCGACGTGCATAATAAAGAAT				16p14	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 (predicted) (Ndufa13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658067-S	ILMN_284956	RFC4_PREDICTED	XM_001056509.1	XM_001056509.1		288003	109494610	XM_001056509.1	Rfc4_predicted	XP_001056509.1	ILMN_1354129	0005720273	S	1094	ACCTGCAGCTGATGAGCCTCTGCGCAACTGTGATGCAGCAACTGACCCAG				11q23	PREDICTED: Rattus norvegicus replication factor C (activator 1) 4 (predicted) (Rfc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656129-S	ILMN_49863	LOC497912	XM_573099.1	XM_573099.1		497912	62656129	XM_573099.1	LOC497912	XP_573099.1	ILMN_1351856	0000380139	S	731	CTGGGTGCCAGGGATGTTAGAAGAAGGCTATGCAGGCAGAACCAGAGAAG				10q22	PREDICTED: Rattus norvegicus similar to butyrophilin related 1 (LOC497912), mRNA.					
Rattus norvegicus	RefSeq	GI_34854187-S	ILMN_69761	LOC294998	XM_238225.2	XM_238225.2		294998	34854187	XM_238225.2	LOC294998	XP_238225.2	ILMN_1354283	0006510494	S	311	GGCCCAGCGGAGAATCGGGACATTCTTTACCCAACAGCAATGAGAACGCC					PREDICTED: Rattus norvegicus hypothetical LOC294998 (LOC294998), mRNA.					
Rattus norvegicus	RefSeq	GI_9506992-A	ILMN_263334	EIF2AK2	NM_019335.1	NM_019335.1		54287	9506992	NM_019335.1	Eif2ak2	NP_062208.1	ILMN_1376267	0001940348	S	1062	TCCCGAGAACAGCACAAACGGTGACACAAGTCGATACAAGACCCGGTGCC					Rattus norvegicus eukaryotic translation initiation factor 2-alpha kinase 2 (Eif2ak2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of apoptosis in cells infected with a virus [goid 6926] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]	Pkr	Pkr
Rattus norvegicus	RefSeq	GI_62651358-S	ILMN_59540	LOC500739	XM_576119.1	XM_576119.1		500739	62651358	XM_576119.1	LOC500739	XP_576119.1	ILMN_1373663	0001580278	S	153	GTCATGCACTGGTTTCGCCAGGCTCCAGAGAACGGGATAGAATGGCTTGC					PREDICTED: Rattus norvegicus similar to Immunoglobulin heavy chain (gamma polypeptide) (LOC500739), mRNA.					
Rattus norvegicus	RefSeq	GI_13929131-S	ILMN_267274	PAX4	NM_031799.1	NM_031799.1		83630	13929131	NM_031799.1	Pax4	NP_113987.1	ILMN_2039497	0006560129	S	991	TCCTCATACATGGAATTTGCCTGGCCCTGCCTCACCACCCATCCTGTGCA	4	-	55313510-55313559	4q22	Rattus norvegicus paired box gene 4 (Pax4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661701-S	ILMN_299359	POLR3D	NM_001031653.1	NM_001031653.1		306012	72255538	NM_001031653.1	Polr3d	NP_001026823.1	ILMN_1355680	0003870487	S	1013	AGAGGGTCAAGTGGGCAAGCTACTCATCCGCAAATCAGGGAAGGTGCAGC	15	-	50839130-50839179	15p11	Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide D, 44kDa (Polr3d), mRNA.	RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template [goid 5666] [evidence IEA]	The synthesis of RNA from a DNA template by RNA polymerase III (Pol III), originating at a Pol III-specific promoter [goid 6383] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]	MGC116334	MGC116334
Rattus norvegicus	RefSeq	GI_18158458-S	ILMN_272221	DGKA	NM_080787.1	NM_080787.1		140866	18158458	NM_080787.1	Dgka	NP_542965.1	ILMN_2039333	0000240471	S	2834	ATCCTCCGCCACCTCACTGCTCCCACACAGACATCCTTACACAACCAGCG	7	-	2019013-2019062	7q11	Rattus norvegicus diacylglycerol kinase, alpha (Dgka), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence ISS]; Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]	Dagk1	Dagk1
Rattus norvegicus	RefSeq	GI_45544638-S	ILMN_288142	RNASE6	NM_206815.1	NM_206815.1		305842	45544638	NM_206815.1	Rnase6	NP_996538.1	ILMN_1349944	0006290168	S	228	TGTGGCTGCTACCTGCGGTTTGCCCAACATCACATGCAAGAACGGTCGGA	15	+	27117873-27117922	15p14	Rattus norvegicus ribonuclease, RNase A family, 6 (Rnase6), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659749-S	ILMN_67349	COPA_PREDICTED	XM_222899.3	XM_222899.3		304978	62659749	XM_222899.3	Copa_predicted	XP_222899.3	ILMN_1360723	0006110070	S	4095	CTACCGCCTTTGGTCCAATTCCACTAGCAAGCAGCAGGATGCAAGAAATG					PREDICTED: Rattus norvegicus coatomer protein complex subunit alpha (predicted) (Copa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653372-S	ILMN_49446	LOC500960	XM_576371.1	XM_576371.1		500960	62653372	XM_576371.1	LOC500960	XP_576371.1	ILMN_1371124	0006510041	S	740	GCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATATA					PREDICTED: Rattus norvegicus similar to Da1-12 (LOC500960), mRNA.					
Rattus norvegicus	RefSeq	GI_23463296-S	ILMN_283120	GRINA	NM_153308.1	NM_153308.1		266668	23463296	NM_153308.1	Grina	NP_695220.1	ILMN_1364042	0000510673	S	1480	CAACACCAGGTCCCAGGGGAGAAGGATCATACCAAGAGGTGAGGGTGCAC	7	+	114280084-114280133	7q34	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) (Grina), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_19705510-S	ILMN_292749	ATG3	NM_134394.1	NM_134394.1		171415	19705510	NM_134394.1	Atg3	NP_599221.1	ILMN_1373265	0001780168	S	1090	GTGATGAAGAAAATTATTGAGACCGTTGCAGAAGGCGGGGGAGAGCTTGG	11	-	57163849-57163898	11q21	Rattus norvegicus ATG3 autophagy related 3 homolog (S. cerevisiae) (Atg3), mRNA.	A ubiquitin ligase complex found in the cytoplasm [goid 153] [evidence ISS]; A ubiquitin ligase complex found in the cytoplasm [goid 153] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]	Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence ISS]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]	Pig1; PIG-1	Pig1; PIG-1
Rattus norvegicus	RefSeq	GI_62644140-S	ILMN_61154	LOC310756	XM_227549.4	XM_227549.4		310756	109465388	XM_227549.4	LOC310756	XP_227549.3	ILMN_1348852	0002510497	S	3360	GCGGTACTGGGGATTGAACCCAGAGCCTCAAATACGCTAGGCAAGCACTC	2	-	200054519-200054568	2q34	PREDICTED: Rattus norvegicus similar to Moloney leukemia virus 10 (LOC310756), mRNA.					
Rattus norvegicus	RefSeq	GI_62650433-S	ILMN_59449	LOC500622	XM_580096.1	XM_580096.1		500622	62650433	XM_580096.1	LOC500622	XP_580096.1	ILMN_1370571	0001570706	S	337	GGTTTACTGTCACCCGAAGGGGCCTAATGGAATCAGTTGGAAGGAGGCCC				6q14	PREDICTED: Rattus norvegicus hypothetical gene supported by BC088468; NM_001009712 (LOC500622), mRNA.					
Rattus norvegicus	RefSeq	GI_62648983-S	ILMN_51066	MRPL50_PREDICTED	XM_342835.2	XM_342835.2		362517	62648983	XM_342835.2	Mrpl50_predicted	XP_342836.1	ILMN_1359659	0005910068	S	925	AAGCCGCTGCTGAAGGCCTCGGGGAGTCTTTGAAGAGCTTACTGGTCTTC				5q22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L50 (predicted) (Mrpl50_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717894-S	ILMN_54267	LOC501248	XM_576667.2	XM_576667.2		501248	109512952	XM_576667.2	LOC501248	XP_576667.2	ILMN_1351075	0007000278	S	709	GACCCCAGTGCCAAGCAACAGCAGGCTTTCTGTGGAGATAGCCCCTCTTC	Un|NW_047851.1	-	2382389-2382415:2382551-2382573		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501248), mRNA.					
Rattus norvegicus	RefSeq	GI_62661650-S	ILMN_54123	SCARA3_PREDICTED	XM_344421.2	XM_344421.2		364405	62661650	XM_344421.2	Scara3_predicted	XP_344422.2	ILMN_1365032	0004060497	S	3135	CCTCTTCCTCTTGGTTGACCTGACACAGATGCACACTGACCTCACCCTAC				15p12	PREDICTED: Rattus norvegicus scavenger receptor class A, member 3 (predicted) (Scara3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650534-S	ILMN_64628	RGD1559651_PREDICTED	XM_576011.2	XM_576011.2		500637	109478095	XM_576011.2	RGD1559651_predicted	XP_576011.2	ILMN_1361308	0001690181	S	1295	CACATGGTCCAAAGGGGAGCGAGTCCTGAGCCTGCAACCCAGAGAACTGA	6	-	46355705-46355754	6q16	PREDICTED: Rattus norvegicus similar to Ab2-162 (predicted) (RGD1559651_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58219521-S	ILMN_277317	SLC25A29	NM_001010958.1	NM_001010958.1		314441	58219521	NM_001010958.1	Slc25a29	NP_001010958.1	ILMN_1362330	0001090601	S	1603	CTTAGTGCCACCCAGGATTCCCAGTGGTAGGTAGTCAGAGGGTCCAGGAG	6	-	133167007-133167056	6q32	Rattus norvegicus solute carrier family 25, member 29 (Slc25a29), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of acyl carnitine into, out of, within or between cells. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane [goid 6844] [evidence IEA]; The directed movement of acyl carnitine into, out of, within or between cells. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane [goid 6844] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of acyl carnitine into, out of, within or between cells. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane [goid 15227] [evidence IEA]; Enables the directed movement of acyl carnitine into, out of, within or between cells. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane [goid 15227] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948497-S	ILMN_47993	SPINT1	NM_001004265.2	NM_001004265.2		311331	67514571	NM_001004265.2	Spint1	NP_001004265.2	ILMN_1366349	0007040390	S	1536	CCCAGTGCAGGCTCTGTGGAGGTAGCTATTGCTGTATTGCTGGCCGTCTG	3	+	105769243-105769252:105769601-105769640	3q35	Rattus norvegicus serine peptidase inhibitor, Kunitz type 1 (Spint1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence IEA]; The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IEA]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	HAI-1	HAI-1
Rattus norvegicus	RefSeq	GI_62646876-S	ILMN_62759	RGD1561312_PREDICTED	XM_575392.2	XM_575392.2		500036	109471783	XM_575392.2	RGD1561312_predicted	XP_575392.1	ILMN_1371289	0000580133	S	3309	GGGAAGGGGGGAGGCAAAGAGAGTCTGTCAAGAAAAAGTGAGCTTGGCAC	4	-	40199493-40199502:40199503-40199542	4q21	PREDICTED: Rattus norvegicus similar to type 1 protein phosphatase targeting subunit RGL/GM (predicted) (RGD1561312_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657154-S	ILMN_284784	RGD1562370_PREDICTED	XM_573202.1	XM_573202.1		498006	62657154	XM_573202.1	RGD1562370_predicted	XP_573202.1	ILMN_1354796	0001570750	S	794	ATGTATGTCCACCATGCGGGTATGCAGTGCCTGAAGAGGCCGGAACTGGG	10	+	92056770-92056819	10q32.1	PREDICTED: Rattus norvegicus RGD1562370 (predicted) (RGD1562370_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20514763-S	ILMN_301604	LHX5	NM_139036.1	NM_139036.1		124451	20514763	NM_139036.1	Lhx5	NP_620605.1	ILMN_1372177	0002480025	S	1370	ACAACCCTAGGTTCACCGACATGATCTCGCACCCGGACACGCCCAGTCCG	12	-	37324290-37324339	12q16	Rattus norvegicus LIM homeobox 5 (Lhx5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEA]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence IEA]; The process that mediates the transfer of information from Purkinje cells to granule cell precursors resulting in an increase in rate of granule cell precursor cell proliferation [goid 21937] [evidence ISS]; The process that mediates the transfer of information from Purkinje cells to granule cell precursors resulting in an increase in rate of granule cell precursor cell proliferation [goid 21937] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090530-S	ILMN_264148	PF4	NM_001007729.1	NM_001007729.1		360918	56090530	NM_001007729.1	Pf4	NP_001007730.1	ILMN_1369599	0003800577	S	206	CCCACTGTGCGGTTCCCCAGCTCATAGCCACGCTGAAGAATGGGAGCAAA	14	-	18812612-18812637:18812775-18812798	14p22	Rattus norvegicus platelet factor 4 (Pf4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IPI]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of megakaryocyte differentiation [goid 45653] [evidence ISS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]	Pf4; PF-4; RATPF4A; Pf4a	Pf4; PF-4; RATPF4A; Pf4a
Rattus norvegicus	RefSeq	GI_62655793-S	ILMN_54827	LOC497668	XM_579473.1	XM_579473.1		497668	62655793	XM_579473.1	LOC497668	XP_579473.1	ILMN_1373786	0005860594	S	14354	CTGCGCTTTCATGTGTGTGGGTTTGGAGTTAGAAGTCAAGAGGAAGAACC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022954 (LOC497668), mRNA.					
Rattus norvegicus	RefSeq	GI_62654936-S	ILMN_63556	MRPL30_PREDICTED	XM_217378.4	XM_217378.4		301352	109485975	XM_217378.4	Mrpl30_predicted	XP_217378.1	ILMN_1350879	0006370494	S	862	TGGTTCTAAGCTCTGAGGAGTCCAAGCAAGGGCAGCATATCTCCTGAGGG	9	+	36849961-36850010	9q21	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L30 (predicted) (Mrpl30_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645004-I	ILMN_59880	STOM_PREDICTED	XM_575120.1	XM_575120.1		296655	62645004	XM_575120.1	Stom_predicted	XP_575120.1	ILMN_1376236	0004590075	S	1378	GGCGGGACTGGACCCGAACTCGAGACCCTTCGTTGTTAACGGCTTTCAGT				3p11	PREDICTED: Rattus norvegicus stomatin (predicted) (Stom_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527569-S	ILMN_265866	LRRC41	NM_001009710.1	NM_001009710.1		362566	57527569	NM_001009710.1	Lrrc41	NP_001009710.1	ILMN_1368622	0006350433	S	2468	GGGCCCATACCTCACAGGCCCATCCTCAGTACCGTCAGCTTGCAGGGACT	5	-	136234622-136234671	5q36	Rattus norvegicus leucine rich repeat containing 41 (Lrrc41), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1311221; MGC93681	RGD1311221; MGC93681
Rattus norvegicus	RefSeq	GI_62662866-S	ILMN_51961	MRPS31_PREDICTED	XM_214383.3	XM_214383.3		290850	62662866	XM_214383.3	Mrps31_predicted	XP_214383.3	ILMN_1362022	0002570372	S	1152	GACCTGTTTCTGCTTTTGAGCAGTGTGCTACCCAGAGCAGGAGAGACACC				16q12.5	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S31 (predicted) (Mrps31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664373-S	ILMN_70240	LOC497722	XM_579583.1	XM_579583.1		497722	62664373	XM_579583.1	LOC497722	XP_579583.1	ILMN_1369063	0001740397	S	1999	AGGAGCCCATTGGAGTGGCCATCGAGGAGGAACGTTTCCACCAGCAGGGA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053905 (LOC497722), mRNA.					
Rattus norvegicus	RefSeq	GI_62666542-S	ILMN_58795	ATP6AP2	XM_217592.4	XM_217592.4		302526	109510446	XM_217592.4	Atp6ap2	XP_217592.4	ILMN_1374034	0001850050	S	2057	CCCCCTGTGAAGTTACTCTGGTTTGTGTGCGATATGGCTTCAATCTGTAG	X	-	22264235-22264284	Xq13	PREDICTED: Rattus norvegicus ATPase, H+ transporting, lysosomal accessory protein 2 (Atp6ap2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process leading to the attainment of the full functional capacity of angiotensin by conversion of renin substrate into mature angiotensin in the blood [goid 2003] [evidence IEA]; The process leading to the attainment of the full functional capacity of angiotensin by conversion of renin substrate into mature angiotensin in the blood [goid 2003] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta1 [goid 32914] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta1 [goid 32914] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence IEA]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645506-S	ILMN_280227	RGD1564423_PREDICTED	XR_009324.1	XR_009324.1		499852	109470457	XR_009324.1	RGD1564423_predicted		ILMN_1368533	0001170167	S	35	GGGCCCCGGCTCCCGCTGTGGTCAAGAAACAGGTCAAAAAGGTGGTCAAT				3q33	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1564423_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27706077-S	ILMN_161793	LOC309858	XM_228305.1	XM_228305.1			27706077	XM_228305.1	LOC309858		ILMN_2040802	0004220725	S	753	CAGTGTTGACATGAAGGCCGAAGGCAGAAGGCAAATGAACGCGCTGGGCC										
Rattus norvegicus	RefSeq	GI_34871468-S	ILMN_280296	GJE1	XM_001075553.1	XM_001075553.1		288529	109496758	XM_001075553.1	Gje1	XP_001075553.1	ILMN_1363031	0000380253	S	856	CTTGGAGCTTGTGCTTTTGGGTTTAGGGAGGGTTTGGAAGACGTACAGGC				12q11	PREDICTED: Rattus norvegicus gap junction membrane channel protein epsilon 1 (Gje1), mRNA.	An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence IEA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence ISS]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62666212-S	ILMN_63416	LOC309796	XM_228184.3	XM_228184.3		309796	62666212	XM_228184.3	LOC309796	XP_228184.3	ILMN_1370887	0004010066	S	433	TGTTACCGATGGCTGCTGCAGGAGACTCCTGGGACAGGCAGGAACTGGCC					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC309796), mRNA.					
Rattus norvegicus	RefSeq	GI_62664048-S	ILMN_53086	NPC1_PREDICTED	XM_341579.2	XM_341579.2		361294	62664048	XM_341579.2	Npc1_predicted	XP_341580.2	ILMN_1374558	0000670075	S	3536	TCACCATGAGCACCAAAGGAAGCAGAGTGAGCAGGGCGGAAGAGGCACTG					PREDICTED: Rattus norvegicus Niemann-Pick disease, type C1 (predicted) (Npc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649104-S	ILMN_292013	PAPPA_PREDICTED	XM_001058647.1	XM_001058647.1		313262	109476575	XM_001058647.1	Pappa_predicted	XP_001058647.1	ILMN_1350814	0006940128	S	5007	TTTCACCCAGGAAGGACCAACTGTGGGGCAATGAACCGAGTCTCACCATG				5q24	PREDICTED: Rattus norvegicus pregnancy-associated plasma protein A (predicted) (Pappa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653304-A	ILMN_270628	PPAN	NM_001011980.1	NM_001011980.1		298699	58865535	NM_001011980.1	Ppan	NP_001011980.1	ILMN_1376862	0005910017	S	1385	CAGAGTGGCAACTGGCAGGCTCTGAAGCCACATGGCAGATCCCAGAGAGT	8	+	19913717-19913766	8q13	Rattus norvegicus peter pan homolog (Drosophila) (Ppan), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108837	MGC108837
Rattus norvegicus	RefSeq	GI_62649576-S	ILMN_301773	COL9A2_PREDICTED	XM_001053671.1	XM_001053671.1		362584	109477151	XM_001053671.1	Col9a2_predicted	XP_001053671.1	ILMN_1374091	0003060546	S	2261	GGGTTGGGGAAGAGAGAACTGCCCCTCCTAAGGGAAGAGGGTGGCTTTTC				5q36	PREDICTED: Rattus norvegicus procollagen, type IX, alpha 2 (predicted) (Col9a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666889-S	ILMN_289655	THOC1	XM_001060062.1	XM_001060062.1		302729	109511846	XM_001060062.1	Thoc1	XP_001060062.1	ILMN_1356610	0001450601	S	806	GAGGAGCTAACAAGGCTTTGGAATCTCTGTCCTGATAACATGGAAGCCTG				Xq22	PREDICTED: Rattus norvegicus THO complex 1 (Thoc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34874722-S	ILMN_64921	LOC364319	XM_344344.1	XM_344344.1		364319	34874722	XM_344344.1	LOC364319	XP_344345.1	ILMN_1365481	0000520039	S	19	TAAAAGATGCGAAGGAGGGTGAAGTGGGGGTGAGCAGCCAGCAGAAGGTG					PREDICTED: Rattus norvegicus similar to T cell receptor (LOC364319), mRNA.					
Rattus norvegicus	RefSeq	GI_13592098-S	ILMN_269192	STX4	NM_031125.1	NM_031125.1		81803	13592098	NM_031125.1	Stx4	NP_112387.1	ILMN_1373557	0005550619	S	769	GAGCTCAGCAGACTATGTGGAACGTGGGCAAGAACATGTCAAGATAGCGC	1	+	187132574-187132623	1q36	Rattus norvegicus syntaxin 4 (Stx4), mRNA.					
Rattus norvegicus	RefSeq	GI_62648286-S	ILMN_287231	LOC500354	NM_001037797.1	NM_001037797.1		500354	83642811	NM_001037797.1	LOC500354	NP_001032886.1	ILMN_1354628	0002690164	S	638	GTGTCCAGAGAATGCCCACAAGCCCCTAGAAACAGCCGCAGAAGAACTGG	4	+	173873648-173873697	4q43	Rattus norvegicus similar to C030030A07Rik protein (LOC500354), mRNA.				MGC114375	MGC114375
Rattus norvegicus	RefSeq	GI_62665449-S	ILMN_49304	TTC13	XM_214720.4	XM_214720.4		292095	109508199	XM_214720.4	Ttc13	XP_214720.4	ILMN_1356895	0006450450	S	3077	TCCTCAGTCAGGGCGGAAGATGGAGGAACAAGGTCCAGTAAAGGCTGCAG	19	-	54848667-54848716	19q12	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 13 (Ttc13), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639077-S	ILMN_59265	LOC292666	XM_214871.3	XM_214871.3		292666	62639077	XM_214871.3	LOC292666	XP_214871.3	ILMN_1370156	0005420129	S	1250	CAGTAAGTGACTCTCAATGGCCTATGGCTGCTGGCTATGACTTATCCTAC				1q21	PREDICTED: Rattus norvegicus similar to pregnancy-specific beta 1-glycoprotein (LOC292666), mRNA.					
Rattus norvegicus	RefSeq	GI_27686282	ILMN_290767	HIST1H4M_PREDICTED	XM_001061900.1	XM_001061900.1		291152	109505976	XM_001061900.1	Hist1h4m_predicted	XP_001061900.1	ILMN_1649934	0005550092	S	244	ACAGAGCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTTGTCTATGC				17q11	PREDICTED: Rattus norvegicus histone 1, H4m (predicted) (Hist1h4m_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34098960-S	ILMN_264019	GALR2	NM_019172.3	NM_019172.3		29234	34098960	NM_019172.3	Galr2	NP_062045.1	ILMN_1368530	0000460131	S	1004	ACCCCATCGTTTACGCTCTGGTCTCCAAGCATTTCCGTAAAGGTTTCCGC	10	+	106396009-106396058	10q32.3	Rattus norvegicus galanin receptor 2 (Galr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IMP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IEA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IDA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IEA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IMP]; Interacting selectively and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators) [goid 42923] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_57526951-S	ILMN_294205	DBX1	NM_001009644.1	NM_001009644.1		292934	57526951	NM_001009644.1	Dbx1	NP_001009644.1	ILMN_1364016	0000540044	S	747	CTGCCGAGAGCAGACCCTCCCTACAAAACTGAACCCTCATCCGGACCTCA	1	-	99437400-99437449	1q22	Rattus norvegicus developing brain homeobox 1 (Dbx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby a cell becomes capable of differentiating autonomously into a ventral spinal cord interneuron in an environment that is neutral with respect to the developmental pathway [goid 21521] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13994224-S	ILMN_267024	HSD17B10	NM_031682.1	NM_031682.1		63864	13994224	NM_031682.1	Hsd17b10	NP_113870.1	ILMN_1362553	0002940180	S	494	GCCAGGTTGGACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGC	X	+	41491154-41491158:41491254-41491298	Xq21	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 10 (Hsd17b10), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NAD+ + 2-methyl-3-hydroxybutyryl-CoA = NADH + H+ + 2-methylaceto-acetyl-CoA [goid 47015] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Hsd17b10	Hsd17b10
Rattus norvegicus	RefSeq	GI_62644826-S	ILMN_50784	RGD1565673_PREDICTED	XM_575102.2	XM_575102.2		499766	109467973	XM_575102.2	RGD1565673_predicted	XP_575102.2	ILMN_1369447	0005720020	S	1359	GGAAAGGGCGGCCACCACAATCAGACGCATGTATCGAGATGACCTAGGGC	3	+	8069735-8069784	3p12	PREDICTED: Rattus norvegicus similar to RNA polymerase I transcription termination factor 1 (predicted) (RGD1565673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654486-S	ILMN_278237	ACVR2B	NM_031554.1	NM_031554.1		25366	67514517	NM_031554.1	Acvr2b	NP_113742.1	ILMN_1374926	0001850390	S	1720	TGTGGACCTGCTCCCTAAAGAGTCCAGCATCTAAGCCCAGGACACTAGCG	8	+	124395659-124395692:124395693-124395708	8q32	Rattus norvegicus activin A receptor, type IIB (Acvr2b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence NAS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32927] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32927] [evidence IEA]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48617] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine/tyrosine = ADP + protein serine/threonine/tyrosine phosphate [goid 4712] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Combining with activin, one of two gonadal glycoproteins related to transforming growth factor beta, to initiate a change in cell activity [goid 17002] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IDA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence TAS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]; Interacting selectively with inhibin beta-A [goid 48186] [evidence IDA]; Interacting selectively with inhibin beta-B [goid 48187] [evidence IDA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_67514517	ILMN_278237	ACVR2B	NM_031554.1	NM_031554.1		25366	67514517	NM_031554.1	Acvr2b	NP_113742.1	ILMN_1530491	0002810156	S	1154	AAGCCTTCTATTGCCCACAGGGACTTCAAAAGCAAGAATGTTCTGCTGAA	8	+	124392539-124392558:124393378-124393407	8q32	Rattus norvegicus activin A receptor, type IIB (Acvr2b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence NAS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32927] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32927] [evidence IEA]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48617] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine/tyrosine = ADP + protein serine/threonine/tyrosine phosphate [goid 4712] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Combining with activin, one of two gonadal glycoproteins related to transforming growth factor beta, to initiate a change in cell activity [goid 17002] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IDA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence TAS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]; Interacting selectively with inhibin beta-A [goid 48186] [evidence IDA]; Interacting selectively with inhibin beta-B [goid 48187] [evidence IDA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651293-S	ILMN_274594	SIVA_PREDICTED	XM_001072975.1	XM_001072975.1		362791	109479987	XM_001072975.1	Siva_predicted	XP_001072975.1	ILMN_1365229	0004280452	S	366	TCCCGGGGCAGCACCCATTGCTTGTTCATCCTGCGTGAGATCTGTGGATG				6q32	PREDICTED: Rattus norvegicus Cd27 binding protein (Hindu God of destruction) (predicted) (Siva_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666034-S	ILMN_267767	RGD1566050_PREDICTED	XM_001053950.1	XM_001053950.1		499442	109510064	XM_001053950.1	RGD1566050_predicted	XP_001053950.1	ILMN_1361005	0001740064	S	1665	CGACAGCCTGCTTCAGATGACAGTAGAGTCAAAGTCCCTGCAGCCTTTCC				20q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32745 (predicted) (RGD1566050_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424193-S	ILMN_288858	RAB3C	NM_133536.1	NM_133536.1		171058	19424193	NM_133536.1	Rab3c	NP_598220.1	ILMN_1371214	0006860441	S	713	CAAGCAGAGCACGAGGCTCAAGGAAACCCCTCCTCCACCACAGCCCAACT	2	-	41457486-41457535	2q14	Rattus norvegicus RAB3C, member RAS oncogene family (Rab3c), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence TAS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence TAS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665047-S	ILMN_293349	RGD1564580_PREDICTED	XR_008840.1	XR_008840.1		364977	109508670	XR_008840.1	RGD1564580_predicted		ILMN_1351098	0004150605	S	359	AGTGCCGTGGCCCCTGGAGCTGATGAAAGCCAAGGCTGGGGCTGGCTTAG				19q11	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1564580_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408307-S	ILMN_301957	NAB1	NM_022856.1	NM_022856.1		64824	12408307	NM_022856.1	Nab1	NP_074047.1	ILMN_1352667	0000580347	S	2226	GCCACAGAAGAGGGAACCGAGATAGCACTGCAAAGTAACGGGCACCGACC				9q22	Rattus norvegicus Ngfi-A binding protein 1 (Nab1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14037] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14037] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermis development [goid 45682] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermis development [goid 45682] [evidence IEA]	Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665102	ILMN_54577	RGD1564108_PREDICTED	XM_238042.4	XM_238042.4		291936	109508009	XM_238042.4	RGD1564108_predicted	XP_238042.3	ILMN_1651179	0005130292	S	4231	GAAATGGGAGCGGGTTGGGAAATCTCGGTGCCTAGGGAACAATAGCCTGC	19	+	29841631-29841680	19q11	PREDICTED: Rattus norvegicus similar to hedgehog-interacting protein (predicted) (RGD1564108_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18777758-S	ILMN_264582	FGF6	NM_131908.1	NM_131908.1		170700	18777758	NM_131908.1	Fgf6	NP_571983.1	ILMN_1360567	0006100162	S	441	GTACACAACGCCCAGCTTCCAGGACGAATGCAAGTTCAGAGAAACCCTCC	4	+	163405378-163405387:163412255-163412294	4q42	Rattus norvegicus fibroblast growth factor 6 (Fgf6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEP]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981105-S	ILMN_302381	IRS1	NM_012969.1	NM_012969.1		25467	6981105	NM_012969.1	Irs1	NP_037101.1	ILMN_1360680	0004670301	S	5089	TTCCAAACCGAAGGAGGATGTATTCTACTGGGGTGTTTTCAAGTGTCGGC	9	-	81585466-81585515	9q34	Rattus norvegicus insulin receptor substrate 1 (Irs1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]	The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B, which occurs as a result of a single trigger reaction or compound [goid 43491] [evidence ISS]; A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B, which occurs as a result of a single trigger reaction or compound [goid 43491] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of phosphoinositide 3-kinase activity [goid 43552] [evidence IDA]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA];  [goid 5010] [evidence IMP]; Interacting selectively with the insulin receptor [goid 5158] [evidence IMP]; Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence IPI]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IPI]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IMP]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IPI]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IDA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence ISS]	IRS1IRM	IRS1IRM
Rattus norvegicus	RefSeq	GI_62662083-S	ILMN_61729	LOC497703	XM_579683.1	XM_579683.1		497703	62662083	XM_579683.1	LOC497703	XP_579683.1	ILMN_1368308	0001780288	S	5582	AATTATTGGAAAGCATTGATGGGCCCTGGCTGGGCAGGGTCTCCCCTGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_153630 (LOC497703), mRNA.					
Rattus norvegicus	RefSeq	GI_13929031-S	ILMN_272157	STK3	NM_031735.1	NM_031735.1		65189	13929031	NM_031735.1	Stk3	NP_113923.1	ILMN_1373576	0006100333	S	2529	GACCTGGGACCAGTCATTTCCTGCACTACACAGGGCCATTTTGATATCGT	7	-	70308219-70308268	7q22	Rattus norvegicus serine/threonine kinase 3 (STE20 homolog, yeast) (Stk3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MST2	MST2
Rattus norvegicus	RefSeq	GI_38454243-S	ILMN_289541	KIFC2	NM_198752.1	NM_198752.1		300053	38454243	NM_198752.1	KIFC2	NP_942047.1	ILMN_1366722	0003120373	S	2956	GGAGCCAGGAAGGCATGGTGACAGCGGGATGGATAGATGGATGGCTTGAG	7	+	114717592-114717641	7q34	Rattus norvegicus kinesin family member C2 (KIFC2), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47155556-S	ILMN_284945	ST8SIA6	NM_213624.1	NM_213624.1		291325	47155556	NM_213624.1	St8sia6	NP_998789.1	ILMN_1368410	0005390400	S	790	GCATTCCTCCTTTTGCCAGCCTTTTCCTATCGGGTCAACACCGGCATCTC	17	-	87928313-87928362	17q12.3	Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 (St8sia6), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence IEA]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycolipid, a compound containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid [goid 9247] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycolipid, a compound containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid [goid 9247] [evidence ISS]; The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y [goid 16051] [evidence IEA]; The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y [goid 16051] [evidence ISS]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence ISS]	Siat8f	Siat8f
Rattus norvegicus	RefSeq	GI_62650061-S	ILMN_61520	LOC298658	XM_238433.2	XM_238433.2		298658	62650061	XM_238433.2	LOC298658	XP_238433.2	ILMN_1360575	0002340093	S	685	CCAGGTGTATGGCTTGTATGCGTGTCTTTGCCACTGTGTGCCTGGTGCCG					PREDICTED: Rattus norvegicus hypothetical LOC298658 (LOC298658), mRNA.					
Rattus norvegicus	RefSeq	GI_62644298-S	ILMN_68968	RGD1561485_PREDICTED	XM_575033.2	XM_575033.2		499705	109465534	XM_575033.2	RGD1561485_predicted	XP_575033.1	ILMN_1363890	0005700603	S	162	GAAGCGCCATCTCTTCTTGTTGAATGATCTTTTGGTTGTGTCTAATAATA	2	-	221514345-221514394	2q42	PREDICTED: Rattus norvegicus similar to Rho GTPase activating protein 20 (predicted) (RGD1561485_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653679-S	ILMN_299423	ATM_MAPPED	XM_001068795.1	XM_001068795.1		300711	109484685	XM_001068795.1	Atm_mapped	XP_001068795.1	ILMN_1353725	0000430465	S	9156	ACTGACCTCCAGTCCACCCCCAGTGCAGACGATCAGGAGTGCAAACGAAG				8q24	PREDICTED: Rattus norvegicus ataxia telangiectasia mutated homolog (human) (mapped) (Atm_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62656097-S	ILMN_268802	LOC316373	XR_007934.1	XR_007934.1		316373	109487071	XR_007934.1	LOC316373		ILMN_1375191	0003870019	S	617	AAGGAAAACCTGATGCAGCGAAAAAGGGCGTGGTCAAGGCTGAGAAGAGC				9q22	PREDICTED: Rattus norvegicus similar to high-mobility group (nonhistone chromosomal) protein 1-like 1 (LOC316373), mRNA.					
Rattus norvegicus	RefSeq	GI_62643945	ILMN_276816	GPATCH4	NM_001024979.1	NM_001024979.1		295228	68163384	NM_001024979.1	Gpatch4	NP_001020150.1	ILMN_1650908	0003610025	S	1004	GGAAGAGATGGGAGTCTGTGATGAAGGAGGCAGAGATGTGACAGGCGGGC	2	+	180131354-180131403	2q34	Rattus norvegicus G patch domain containing 4 (Gpatch4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651677-S	ILMN_302880	RGD1561530_PREDICTED	XR_009018.1	XR_009018.1		299637	109481513	XR_009018.1	RGD1561530_predicted		ILMN_1365126	0002640161	S	1541	ATGGCCAGCACTGCCTCTTCAACAGCAGGGAGAGGAACCAGGTGCTCACT				7q11	PREDICTED: Rattus norvegicus similar to Tle6 protein (predicted) (RGD1561530_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850639-S	ILMN_282043	VISA	NM_001005556.1	NM_001005556.1		311430	53850639	NM_001005556.1	Visa	NP_001005556.1	ILMN_1348979	0004780609	S	2668	TAGTGCCTATCCCCGAGGGTGTGAGCACAAGTTCTTGCCGTCCTGCCCAG	3	+	118952807-118952856	3q36	Rattus norvegicus virus-induced signaling adapter (Visa), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Visa	Visa
Rattus norvegicus	RefSeq	GI_62646969-S	ILMN_263614	RGD1559502_PREDICTED	XM_001064934.1	XM_001064934.1		500068	109473273	XM_001064934.1	RGD1559502_predicted	XP_001064934.1	ILMN_1374699	0004050180	S	527	CCGGAGTGTCATCCTGGAAGGAGAGCGAAAGCGACCATCATCCGTCACCT				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025E21 (predicted) (RGD1559502_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654841-S	ILMN_54728	PLEKHB2_PREDICTED	XM_217372.4	XM_217372.4		301337	109485933	XM_217372.4	Plekhb2_predicted	XP_217372.3	ILMN_1363155	0001450014	S	3195	CTCAGATCATCCCTTGCCAAGAGGGCTCGTCTTAGGTCGCTAGTGCCCAC	9	+	33618017-33618066	9q21	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family B (evectins) member 2 (predicted) (Plekhb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666014-S	ILMN_54043	LOC361853	XM_342147.2	XM_342147.2		361853	62666014	XM_342147.2	LOC361853	XP_342148.2	ILMN_1369283	0005670673	S	3404	GATCCCCAGCGCCAGGAGTGGTTTGCCCGGTACTTCACGTTCTGAATGAC				20q11	PREDICTED: Rattus norvegicus similar to Hypothetical protein C6orf60 (predicted) (LOC361853), mRNA.					
Rattus norvegicus	RefSeq	GI_62639622-S	ILMN_268572	KLK9_PREDICTED	XM_001080422.1	XM_001080422.1		292851	109461836	XM_001080422.1	Klk9_predicted	XP_001080422.1	ILMN_1358473	0004730059	S	590	CTGCAATGCGCCAACATTAGCATCCTGGACAACAAGCTCTGCCGCTGGGC				1q22	PREDICTED: Rattus norvegicus kallikrein 9 (predicted) (Klk9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655923-S	ILMN_62242	LOC497878	XM_573063.1	XM_573063.1		497878	62655923	XM_573063.1	LOC497878	XP_573063.1	ILMN_1372827	0000360435	S	769	GGAGCTACAAGACAACACTGTACTGCTGGGGTACGGGTGGGGCAGGCAGA				10q12	PREDICTED: Rattus norvegicus similar to p19 (LOC497878), mRNA.					
Rattus norvegicus	RefSeq	GI_62645353-S	ILMN_275835	SLC43A1_PREDICTED	XM_230050.3	XM_230050.3		311168	62645353	XM_230050.3	Slc43a1_predicted	XP_230050.4	ILMN_1358919	0002760537	S	2328	TGCACATGCATTCTTTCCTGTGGGGGAGGGACTGAGGGGCTGGCTGTAGC	3	+	68089886-68089935	3q24	PREDICTED: Rattus norvegicus solute carrier family 43, member 1 (predicted) (Slc43a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649538	ILMN_297958	RGD1561325_PREDICTED	XM_001072642.1	XM_001072642.1		362577	109477105	XM_001072642.1	RGD1561325_predicted	XP_001072642.1	ILMN_1651109	0007050315	S	856	GCACAAGAAGCTCCAGAGTCAGTGCTCACCAAGGATGTCGTCGGCACCAG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32000 (predicted) (RGD1561325_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639600-S	ILMN_267032	LOC687856	XM_001080365.1	XM_001080365.1		687856	109461817	XM_001080365.1	LOC687856	XP_001080365.1	ILMN_1356957	0004850324	S	677	TGGTGGCTGTCGGGGAGGCAGCAGTCAAGCTCCTGATTCTTGGGCTCTGT					PREDICTED: Rattus norvegicus similar to Myeloid cell surface antigen CD33 precursor (Siglec-3) (LOC687856), mRNA.					
Rattus norvegicus	RefSeq	GI_46485443-S	ILMN_300475	GLTSCR2	NM_207591.1	NM_207591.1		292624	46485443	NM_207591.1	Gltscr2	NP_997474.1	ILMN_1374045	0004850154	S	1378	CGAGCCAAGTTCAAGCGCAAATACAAAGTGAAGCTGGTGGAGAAGCGGGC	1	-	76281118-76281160:76281276-76281282	1q21	Rattus norvegicus glioma tumor suppressor candidate region gene 2 (Gltscr2), mRNA.					
Rattus norvegicus	RefSeq	GI_62649916-S	ILMN_54096	RGD1560468_PREDICTED	XM_575939.2	XM_575939.2		500572	109475714	XM_575939.2	RGD1560468_predicted	XP_575939.1	ILMN_1364089	0003130088	S	1000	CTGGAAATCAGGGCAGAAACGAAGGCAGAGTGGAGACCAGTGAGGCTCGG	5	-	157719948-157719997	5q36	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560468_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718598-S	ILMN_48102	LOC503376	XM_578915.1	XM_578915.1		503376	62718598	XM_578915.1	LOC503376	XP_578915.1	ILMN_1360010	0006110364	S	686	TTCAGGAGCAGGAAGCCAATTGACAGGCGGATTAGCCTCAGTTCCAGGAG					PREDICTED: Rattus norvegicus similar to ENSANGP00000000140 (LOC503376), mRNA.					
Rattus norvegicus	RefSeq	GI_62665639-A	ILMN_270645	DDAH2	NM_212532.1	NM_212532.1		294239	47087078	NM_212532.1	Ddah2	NP_997697.1	ILMN_1376812	0004920347	S	1130	GCCGTCTAGGGAGTAGAATCAGGTAATAGAGGCTGGGTAGTCGTGGGAGA				20p12	Rattus norvegicus dimethylarginine dimethylaminohydrolase 2 (Ddah2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6525] [evidence IDA]	Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline [goid 16403] [evidence IDA]; Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline [goid 16403] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105993	MGC105993
Rattus norvegicus	RefSeq	GI_62657388-S	ILMN_61271	LOC360669	XM_346906.2	XM_346906.2		360669	62657388	XM_346906.2	LOC360669	XP_346907.2	ILMN_1351021	0000630593	S	416	TCCTGCACAGAAGCAACCCCAGACTCCAGAACTCCAGACTCCAACCCCAG					PREDICTED: Rattus norvegicus hypothetical LOC360669 (LOC360669), mRNA.					
Rattus norvegicus	RefSeq	GI_51871602-A	ILMN_270578	ST7	NM_001004102.1	NM_001004102.1		296911	51871602	NM_001004102.1	ST7	NP_001004102.1	ILMN_1376390	0002760711	S	1574	TACAGAGACAGCTGACCGGGAGCTACTTCCCTCTTTCCATGAAGTCTCAG	4	+	43594658-43594689:43597346-43597363	4q21	Rattus norvegicus suppression of tumorigenicity 7 (ST7), transcript variant 1, mRNA.				MGC124523	MGC124523
Rattus norvegicus	RefSeq	GI_9910529-S	ILMN_295419	EXTL3	NM_020097.1	NM_020097.1		56819	9910529	NM_020097.1	Extl3	NP_064482.1	ILMN_1359404	0001190095	S	2864	GCCCAGGCCCTTTGCTTGGAGAAGAGCAGGGAGAGTAGAAAGGGATGGCT	15	-	44400415-44400464	15p12	Rattus norvegicus exostoses (multiple)-like 3 (Extl3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Regr	Regr
Rattus norvegicus	RefSeq	GI_62651790-S	ILMN_59719	LOC500800	XM_576189.1	XM_576189.1		500800	62651790	XM_576189.1	LOC500800	XP_576189.1	ILMN_1361126	0000430156	S	788	GGGACCCCTGGATGCCTAATACACAAAGGGCTCTGACCTAAGCAGGGATG				7q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40365 (LOC500800), mRNA.					
Rattus norvegicus	RefSeq	GI_62643063-S	ILMN_52353	LOC499547	XM_574872.1	XM_574872.1		499547	62643063	XM_574872.1	LOC499547	XP_574872.1	ILMN_1361399	0000840100	S	307	GTTAGACCGCAGGGAAACAAATAATCCTATTAAAAAATGGGGTTCAGAGC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499547), mRNA.					
Rattus norvegicus	RefSeq	GI_62667566	ILMN_69376	RGD1565203_PREDICTED	XM_343847.3	XM_343847.3		363523	109511420	XM_343847.3	RGD1565203_predicted	XP_343848.2	ILMN_1650989	0000430400	S	384	GGTCGCCAACGCCCAGCGTCAACTCTTAATGGTTCCACAGGAGTACACTG	X	+	160540129-160540178	Xq37	PREDICTED: Rattus norvegicus similar to ESO3 protein (predicted) (RGD1565203_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663174	ILMN_67183	LOC498695	XM_573980.1	XM_573980.1		498695	62663174	XM_573980.1	LOC498695	XP_573980.1	ILMN_1649994	0004480364	S	1421	GACGGGTTGGCCTCAAACTCAGACATTTGCTTCCTTCTGCCTCTCCAGTG				17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5133401N09 (LOC498695), mRNA.					
Rattus norvegicus	RefSeq	GI_34882733-S	ILMN_61514	LOC307057	XM_225481.2	XM_225481.2		307057	34882733	XM_225481.2	LOC307057	XP_225481.2	ILMN_1354847	0006450601	S	2909	GGACATGCTGGAGCAGCTAGAGAGGTACAGTGGAAAGCAATATGGCAAGG					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC307057), mRNA.					
Rattus norvegicus	RefSeq	GI_56912234-A	ILMN_280877	KRT34	NM_001008758.1	NM_001008758.1		303528	56912234	NM_001008758.1	Krt34	NP_001008758.1	ILMN_1376401	0001980333	S	1127	ATGCTAGCGGCGGCTGCTGTGGACCTTGTGGCAGCTCTCGTTGCTCTTAA				10q32.1	Rattus norvegicus keratin 34 (Krt34), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ka29	Ka29
Rattus norvegicus	RefSeq	GI_62639073-S	ILMN_299583	CGM4	NM_012525.1	NM_012525.1		24257	66346734	NM_012525.1	Cgm4	NP_036657.1	ILMN_1363112	0003450632	S	2003	TGCTCCAATAGTTTCACCCAAACCCAAAGCTGGACCCCAGTCACCCATGG	1	+	77453546-77453595	1q21	Rattus norvegicus carcinoembryonic antigen gene family 4 (Cgm4), mRNA.				CEA4; Cea; CEA5; CGM4AA; Cear; RATCGM4AA; Psg16; Cgm4	CEA4; Cea; CEA5; CGM4AA; Cear; RATCGM4AA; Psg16; Cgm4
Rattus norvegicus	RefSeq	GI_62644370-S	ILMN_49762	LOC365936	XM_345288.2	XM_345288.2		365936	62644370	XM_345288.2	LOC365936	XP_345289.2	ILMN_1353294	0005340563	S	1026	CTGGGGCTGAGCGAGTGTGGCTTTACCACAAACATCTTGGAAAAACGCGG					PREDICTED: Rattus norvegicus similar to dynein (515 AA) (LOC365936), mRNA.					
Rattus norvegicus	RefSeq	GI_31342493-S	ILMN_267542	ENTPD3	NM_178106.2	NM_178106.2		316077	31342493	NM_178106.2	Entpd3	NP_835207.1	ILMN_1352156	0001740093	S	2731	ACCAAGGTGGGAGGTTGGGGGTGGATCCCATTGACCTGACAAAGCTCCTG	8	+	125573610-125573659	8q32	Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 3 (Entpd3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with diphosphate on its glycose moiety [goid 9134] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with diphosphate on its glycose moiety [goid 9134] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence ISS]	Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence ISS]	NTPDase3	NTPDase3
Rattus norvegicus	RefSeq	GI_62649321-S	ILMN_68716	LOC500515	XM_580080.1	XM_580080.1		500515	62649321	XM_580080.1	LOC500515	XP_580080.1	ILMN_1370957	0000380463	S	610	CAATTGCCACCCAGGTGCTGCAGGGGAAGCCCATGTTTCCTCCAATGGAC					PREDICTED: Rattus norvegicus LOC500515 (LOC500515), mRNA.					
Rattus norvegicus	RefSeq	GI_62658790-I	ILMN_281905	LOC687365	XM_001078177.1	XM_001078177.1		687365	109497247	XM_001078177.1	LOC687365	XP_001078177.1	ILMN_1375662	0005890504	S	1401	GGATGTCCATCCTCTTGGGTGACTCTGGGAGTCTGATCCCCACAGGGGCT					PREDICTED: Rattus norvegicus similar to potassium channel tetramerisation domain containing 7 (LOC687365), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_48675861-S	ILMN_290743	ACOT2	NM_138907.2	NM_138907.2		192272	48675861	NM_138907.2	Acot2	NP_620262.2	ILMN_1374066	0001850193	S	1738	GAACTTGCTTTGTAGACCAGAGGCTAGGCCTGAATTCTGAGGTTGGCCGG	6	+	108023756-108023805	6q31	Rattus norvegicus acyl-CoA thioesterase 2 (Acot2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater [goid 38] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence ISS]	Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A [goid 16790] [evidence IEA]	Acot2	Acot2
Rattus norvegicus	RefSeq	GI_62646456-S	ILMN_284570	LOC679036	XM_001054346.1	XM_001054346.1		679036	109471422	XM_001054346.1	LOC679036	XP_001054346.1	ILMN_1370263	0001940541	S	839	TTGACTAATTAAACTTTATGTGAATAAACTTTGACTTTACCTGTAAAAAA					PREDICTED: Rattus norvegicus similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (UCH-L3) (Ubiquitin thioesterase L3) (LOC679036), mRNA.					
Rattus norvegicus	RefSeq	GI_34860883-S	ILMN_284570	LOC679036	XM_001054346.1	XM_001054346.1		679036	109471422	XM_001054346.1	LOC679036	XP_001054346.1	ILMN_1361658	0001230110	S	353	CCACGCCATCGCGAACAACAAAGACAAGATGCACTTTGAGTCAGGGTCAG					PREDICTED: Rattus norvegicus similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (UCH-L3) (Ubiquitin thioesterase L3) (LOC679036), mRNA.					
Rattus norvegicus	RefSeq	GI_62644638-S	ILMN_63904	LOC502606	XM_578094.1	XM_578094.1		502606	62644638	XM_578094.1	LOC502606	XP_578094.1	ILMN_1373840	0000130181	S	1631	GGACTTGAGAGAGTCCAGTGCATTTCCACCCGCCAGCTCCAGACTGCTGT					PREDICTED: Rattus norvegicus similar to TDPOZ5 (LOC502606), mRNA.					
Rattus norvegicus	RefSeq	GI_62665870-S	ILMN_266999	LOC689927	XM_001069143.1	XM_001069143.1		689927	109509254	XM_001069143.1	LOC689927	XP_001069143.1	ILMN_1372360	0004780725	S	590	GTGCAGCACACAGGCCTGCAGCACAGGGTCACACAGCAGGAGGGCTGGCA	20	-	11174368-11174417	20p12	PREDICTED: Rattus norvegicus similar to keratin associated protein 10-10, transcript variant 3 (LOC689927), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with an iron-sulfur cluster, a combination of iron and sulfur atoms [goid 51536] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654844-S	ILMN_54916	LOC367201	XM_346007.2	XM_346007.2		367201	62654844	XM_346007.2	LOC367201	XP_346008.2	ILMN_1370584	0001240279	S	254	GGCTCGGCCACCCCAACCATCAGGACACTACAAGCTCATACAATTCCTTT				9q11	PREDICTED: Rattus norvegicus similar to Sulfotransferase K1 (rSULT1C2) (LOC367201), mRNA.					
Rattus norvegicus	RefSeq	GI_62718574-S	ILMN_69161	LOC503369	XM_578909.1	XM_578909.1		503369	62718574	XM_578909.1	LOC503369	XP_578909.1	ILMN_1364803	0004280451	S	494	CCATATGCCTGCCCTTCAAGGTGTGTTTCTGTCAGCGAGTCTTAGAATGG					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503369), mRNA.					
Rattus norvegicus	RefSeq	GI_47577300-S	ILMN_293452	OLR408	NM_001000384.1	NM_001000384.1		296672	47577300	NM_001000384.1	Olr408	NP_001000384.1	ILMN_1354668	0006520112	S	37	AACCTCCTGGGGCTCCCCATTCGGGCAGAAGACCAAGGTGTGTACTCTGT	3	+	16279296-16279345	3p11	Rattus norvegicus olfactory receptor 408 (Olr408), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr408; ratchr3-16175632-16176570_ORF	Olr408; ratchr3-16175632-16176570_ORF
Rattus norvegicus	RefSeq	GI_62667365-S	ILMN_273857	ELF4_PREDICTED	XM_001059821.1	XM_001059821.1		302811	109512564	XM_001059821.1	Elf4_predicted	XP_001059821.1	ILMN_1360099	0001980433	S	2405	CAGCTCAAGCATCGCTGGCATCAGACATGGCCTTCAAGAGCACTAGGGAG				Xq35	PREDICTED: Rattus norvegicus E74-like factor 4 (ets domain transcription factor) (predicted) (Elf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30842820-S	ILMN_300855	ABRA	NM_175844.2	NM_175844.2		286965	30842820	NM_175844.2	Abra	NP_787038.1	ILMN_1349223	0006420735	S	1066	CAGATAAAGTGGTGGGCATCCTCATGCGTGCCAGGAAACACGGACTGGTG	7	-	77507051-77507100	7q31	Rattus norvegicus actin-binding Rho activating protein (Abra), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence IDA]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of Rho protein signal transduction [goid 35025] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Rho protein signal transduction [goid 35025] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence ISS]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]	Stars; Ms1	Stars; Ms1
Rattus norvegicus	RefSeq	GI_58585239-S	ILMN_278091	CCDC7	NM_001011561.1	NM_001011561.1		497041	58585239	NM_001011561.1	Ccdc7	NP_001011561.1	ILMN_1361839	0001500128	S	1674	CCCTACTGAAGAAGAGTGACACACAGTCCGCTGGACAGAGGCAGGATCAG					Rattus norvegicus coiled-coil domain containing 7 (Ccdc7), mRNA.				MGC93946	MGC93946
Rattus norvegicus	RefSeq	GI_8392832-S	ILMN_291370	ACADM	NM_016986.1	NM_016986.1		24158	8392832	NM_016986.1	Acadm	NP_058682.1	ILMN_1362897	0006370400	S	1622	CTCAGGATTCTACACAGACACTGAGGAATGTGGCGGATTGGACCCATCAC	2	-	251866839-251866888	2q45	Rattus norvegicus acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain (Acadm), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage [goid 6082] [evidence ISS]; The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage [goid 6082] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence TAS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 9437] [evidence ISS]; The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 9437] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	MCAD	MCAD
Rattus norvegicus	RefSeq	GI_62665229	ILMN_61380	LOC502200	XM_577661.1	XM_577661.1		502200	62665229	XM_577661.1	LOC502200	XP_577661.1	ILMN_1650162	0001400113	S	31	GAATGTTGTCTTATGGTGGTCCATAAGGGGGCCACCCAGCCAGCTCCCGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004A20 (LOC502200), mRNA.					
Rattus norvegicus	RefSeq	GI_62638246-S	ILMN_264059	REPS1_PREDICTED	XM_001060697.1	XM_001060697.1		292944	109460376	XM_001060697.1	Reps1_predicted	XP_001060697.1	ILMN_1358771	0000460632	S	2390	CCGACCGTTCTCTCACCTCTAAGTGATGGCCGTTAACTGTGAACTCGCCC				1p12	PREDICTED: Rattus norvegicus RalBP1 associated Eps domain containing protein (predicted), transcript variant 3 (Reps1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643224-S	ILMN_60235	LOC499577	XM_574902.1	XM_574902.1		499577	62643224	XM_574902.1	LOC499577	XP_574902.1	ILMN_1354614	0003060484	S	2075	GCTACCTCGGTTACAGAAGGGTGCCATGGAAGTGTGGTATTATTATCCCC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499577), mRNA.					
Rattus norvegicus	RefSeq	GI_62655393-S	ILMN_264930	RGD1566074_PREDICTED	XM_001066845.1	XM_001066845.1		501183	109487504	XM_001066845.1	RGD1566074_predicted	XP_001066845.1	ILMN_1351291	0002650358	S	2901	GGCTGAACTGCACCCAGAGATCAGCAGAGACCACATTATAGAGGCCCTTC				9q36	PREDICTED: Rattus norvegicus RGD1566074 (predicted) (RGD1566074_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394199-S	ILMN_285367	SLC6A12	NM_017335.1	NM_017335.1		50676	8394199	NM_017335.1	Slc6a12	NP_059031.1	ILMN_1353136	0006940538	S	2181	CGCATTTGTAGGGAGTGCCAGAGGCCAGGTAACTCCAGAGCCAGGAACCT	4	+	157799718-157799767	4q42	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 (Slc6a12), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence TAS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Gat1; VGAT; BGT1; RNU28927	Gat1; VGAT; BGT1; RNU28927
Rattus norvegicus	RefSeq	GI_62664354	ILMN_63242	RGD1563192_PREDICTED	XM_225959.4	XM_225959.4		307446	109506561	XM_225959.4	RGD1563192_predicted	XP_225959.4	ILMN_1650430	0003850348	S	1015	GCTGTGGCTGAAAGAGTTGCTGCAGAGAGAAGGGAAAGGATTGGTCAAAC	18	+	38597679-38597728	18q11	PREDICTED: Rattus norvegicus similar to YTH domain containing 2 (predicted) (RGD1563192_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644854-S	ILMN_52187	LOC499769	XM_580011.1	XM_580011.1		499769	62644854	XM_580011.1	LOC499769	XP_580011.1	ILMN_1359366	0004570292	S	517	AAAAGCTACAGCAAAAATGCGAAGGAGCCTGTGCCGTGTCCCCCACGCCC					PREDICTED: Rattus norvegicus LOC499769 (LOC499769), mRNA.					
Rattus norvegicus	RefSeq	GI_40363264-S	ILMN_292106	PKLR	NM_012624.2	NM_012624.2		24651	40363264	NM_012624.2	Pklr	NP_036756.2	ILMN_1359213	0004480026	S	2825	AGTGTGCAAGGACCACAAAGATGTCCCCCCTCAGCCCCCTACCAGAAGGT	2	+	181223408-181223457	2q34	Rattus norvegicus pyruvate kinase, liver and red blood cell (Pklr), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism [goid 51707] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism [goid 51707] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism [goid 51707] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism [goid 51707] [evidence IEA]	Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence ISS]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	PKL; PK1; Pklg	PKL; PK1; Pklg
Rattus norvegicus	RefSeq	GI_31543366-S	ILMN_285436	OSGIN1	NM_138504.2	NM_138504.2		171493	31543366	NM_138504.2	Osgin1	NP_612513.1	ILMN_1354748	0006350139	S	2155	CTATCCTCAGGCGAGTCAAGGCCCAAGGTGGGAGCAGTAGCCATAGACCA	19	+	49690297-49690346	19q12	Rattus norvegicus oxidative stress induced growth inhibitor 1 (Osgin1), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650521-S	ILMN_286980	LOC686566	XM_001074769.1	XM_001074769.1		686566	109479192	XM_001074769.1	LOC686566	XP_001074769.1	ILMN_1350732	0003450369	S	1990	CTCCCCACTGAAGAACTGGAAGGTGACGGGTCTGTCTTGAAAAGGGGACC					PREDICTED: Rattus norvegicus similar to leader-binding protein 32 isoform 1 (LOC686566), mRNA.					
Rattus norvegicus	RefSeq	GI_62657942-S	ILMN_273820	STFA3_PREDICTED	XM_001070663.1	XM_001070663.1		288075	109494442	XM_001070663.1	Stfa3_predicted	XP_001070663.1	ILMN_1361234	0002360739	S	194	GGTGGATGTAGGGAATGGTCGTTTCCTTCACATGAAAGTCCTCAGAGGCC				11q22	PREDICTED: Rattus norvegicus stefin A3 (predicted) (Stfa3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575988-S	ILMN_273952	OLR94	NM_001001023.1	NM_001001023.1		405908	47575988	NM_001001023.1	Olr94	NP_001001023.1	ILMN_1374860	0002450452	S	425	CCGCTATTCCGACTCACGGTGTCATCCGGAACTTGGGGATAATGAGTGTC	1	-	161099500-161099549	1q32	Rattus norvegicus olfactory receptor 94 (Olr94), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr94	Olr94
Rattus norvegicus	RefSeq	GI_45331204-S	ILMN_266361	DMP1	NM_203493.2	NM_203493.2		25312	45331204	NM_203493.2	Dmp1	NP_987089.1	ILMN_1371023	0000070138	S	2569	AGTGCAAGCACCATCCCCGAGTCCTTTCCATGTGTTGCACATAGCACAGA	14	-	6637231-6637280	14p22	Rattus norvegicus dentin matrix protein 1 (Dmp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence TAS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]		DENTMAT	DENTMAT
Rattus norvegicus	RefSeq	GI_62645970-S	ILMN_61958	HARS2_PREDICTED	XM_342532.3	XM_342532.3		362227	109468935	XM_342532.3	Hars2_predicted	XP_342533.2	ILMN_1364969	0002120195	S	736	AGCAGCGGGGCAGAGGGTGATGTGTCTTCAGAGAGGGAGCCATAGATGCA	3	+	133299767-133299811:133299812-133299816	3q41	PREDICTED: Rattus norvegicus histidyl tRNA synthetase 2 (predicted) (Hars2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645082-S	ILMN_63632	LOC502626	XM_578119.1	XM_578119.1		502626	62645082	XM_578119.1	LOC502626	XP_578119.1	ILMN_1365936	0000780278	S	220	CAAGAACCACTTCCAGAGTCCTGCCAGGTTGCCAGAGTCCTTCCAGGTTG				3q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210409E12 (LOC502626), mRNA.					
Rattus norvegicus	RefSeq	GI_62641641-S	ILMN_50685	LOC499291	XM_579941.1	XM_579941.1		499291	62641641	XM_579941.1	LOC499291	XP_579941.1	ILMN_1363866	0006180494	S	127	AGGATTCCTCTCAGGAGCTGGTGTTGGGAACGAAGGAGGAGACTGTGCAC				1q41	PREDICTED: Rattus norvegicus LOC499291 (LOC499291), mRNA.					
Rattus norvegicus	RefSeq	GI_34870150-A	ILMN_268061	PTPRF	NM_019249.1	NM_019249.1		360406	9507012	NM_019249.1	Ptprf	NP_062122.1	ILMN_1376592	0002900167	S	6386	AGACAGTGGTGGGCGGGGAGGCGATAGGAAACACATCCCCAGTGTGCATT	5	-	138671828-138671877	5q36	Rattus norvegicus protein tyrosine phosphatase, receptor type, F (Ptprf), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; A synapse in which an action potential in the presynaptic cell increases the probability of an action potential occurring in the postsynaptic cell [goid 60076] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence IMP]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell projections [goid 31345] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 42059] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of dendrite morphogenesis [goid 50775] [evidence IMP]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the nerve growth factor receptor signaling pathway [goid 51387] [evidence IMP]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA];  [goid 5001] [evidence IDA]; Interacting selectively with the insulin receptor [goid 5158] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with a receptor that possesses protein tyrosine kinase activity [goid 30971] [evidence IPI]; Interacting selectively with phosphate [goid 42301] [evidence IDA]	LARFN5C	LARFN5C
Rattus norvegicus	RefSeq	GI_62655983-S	ILMN_267567	RGD1309561_PREDICTED	XM_001067906.1	XM_001067906.1		287212	109490540	XM_001067906.1	RGD1309561_predicted	XP_001067906.1	ILMN_1372688	0004760128	S	3030	GCACTTTGGGAATGAGTACTGAGCTGTATGACCCCACTCTGCAGACACCA				10q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31951 (predicted) (RGD1309561_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454207-S	ILMN_295138	KCTD13	NM_198736.1	NM_198736.1		293497	38454207	NM_198736.1	Kctd13	NP_942031.1	ILMN_1351737	0004610131	S	1475	CGTGTAGAAGGAGACAGTACCATCAACCATACTCCAAGCTGCTTTCCGCC	1	+	186122629-186122678	1q36	Rattus norvegicus potassium channel tetramerisation domain containing 13 (Kctd13), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IDA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence TAS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence TAS]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645608-S	ILMN_67141	VPS18_PREDICTED	XM_230471.3	XM_230471.3		296083	109468666	XM_230471.3	Vps18_predicted	XP_230471.1	ILMN_1371283	0004540079	S	3080	GCTCAAGGCTGACCTCGATGAGCTGGTGGCTGCTGAGTGTGTGTACTGTG	3	+	105815507-105815556	3q35	PREDICTED: Rattus norvegicus vacuolar protein sorting 18 (yeast) (predicted) (Vps18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605777-S	ILMN_287262	RGD1309594	NM_001008351.1	NM_001008351.1		309681	56605777	NM_001008351.1	RGD1309594	NP_001008352.1	ILMN_1365778	0005720039	S	1553	AACGACCTGAGGAAGGGCCAAGGGACAGGTAGAGCAGCGTGTGAAGAAGC	20	-	11034207-11034256	20p12	Rattus norvegicus similar to RIKEN cDNA 1810043G02; DNA segment, Chr 10, Johns Hopkins University 13, expressed (RGD1309594), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95110	MGC95110
Rattus norvegicus	RefSeq	GI_62658001-S	ILMN_279592	ZDHHC19	NM_001039259.1	NM_001039259.1		288045	86129541	NM_001039259.1	Zdhhc19	NP_001034348.1	ILMN_1353986	0000050014	S	1167	GAGAAGACTAAACACCCACCACCGTGTCCTCCCAAACCTTGTGGCCCAGG	11	-	70094465-70094514	11q22	Rattus norvegicus zinc finger, DHHC domain containing 19 (Zdhhc19), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156468	MGC156468
Rattus norvegicus	RefSeq	GI_62658002-S	ILMN_279592	ZDHHC19	NM_001039259.1	NM_001039259.1		288045	86129541	NM_001039259.1	Zdhhc19	NP_001034348.1	ILMN_1361055	0004730707	S	613	TCAGTGAGGATCCCAGGACCGTGCATGTGGTGCGAGTGAACCAAAGGGCT	11	-	70103194-70103243	11q22	Rattus norvegicus zinc finger, DHHC domain containing 19 (Zdhhc19), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156468	MGC156468
Rattus norvegicus	RefSeq	GI_62638297-S	ILMN_65129	LOC502218	XM_577680.1	XM_577680.1		502218	62638297	XM_577680.1	LOC502218	XP_577680.1	ILMN_1356755	0003520324	S	85	GTTCAGCTAGTGAGATGAATGTGTTATCTGTGAGCGCCGCTGTAACTGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200015N20 (LOC502218), mRNA.					
Rattus norvegicus	RefSeq	GI_57528278-S	ILMN_287103	SUMO1	NM_001009672.1	NM_001009672.1		301442	57528278	NM_001009672.1	Sumo1	NP_001009672.1	ILMN_1362579	0003520563	S	1016	CAGACACTGCTCCTTTTGATTCTGTTGTACTTTTTGGCCTGGGACATGGG	9	-	58212598-58212647	9q31	Rattus norvegicus SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (Sumo1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence ISS]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence ISS]	MGC109561	MGC109561
Rattus norvegicus	RefSeq	GI_62664086-S	ILMN_268377	DSC1_PREDICTED	XM_001053969.1	XM_001053969.1		291759	109506982	XM_001053969.1	Dsc1_predicted	XP_001053969.1	ILMN_1359408	0003140273	S	1926	GGAGTCCAGCAAAGGAGGTGTGCTAGGAGCAGCAGACACTGGCCGATATG				18p12	PREDICTED: Rattus norvegicus desmocollin 1 (predicted) (Dsc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393495-A	ILMN_295300	GSK3A	NM_017344.1	NM_017344.1		50686	8393495	NM_017344.1	Gsk3a	NP_059040.1	ILMN_1376822	0003060605	S	1319	GTGCCCACAGTTTCTTTGATGAACTGCGGAGTCTCGGAACCCAGCTCCCC	1	-	80505906-80505955	1q21	Rattus norvegicus glycogen synthase kinase 3 alpha (Gsk3a), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA];  [goid 4696] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein [goid 50321] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650855-S	ILMN_57943	LOC366625	XM_578543.1	XM_578543.1		366625	62650855	XM_578543.1	LOC366625	XP_578543.1	ILMN_1357281	0002360397	S	1788	CTTCCAAGGTCTTTGCTGTCAGCAGCCCTGAACCTTTTCCCGTTTACCTG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (LOC366625), mRNA.					
Rattus norvegicus	RefSeq	GI_62646587-S	ILMN_48005	LOC502705	XM_578205.1	XM_578205.1		502705	62646587	XM_578205.1	LOC502705	XP_578205.1	ILMN_1374631	0003990286	S	2	GTTTCAGATGTGCTCTCCGGGATCTGTTATAAATCAAGATGGCCAGCCTC					PREDICTED: Rattus norvegicus similar to VEPH isoform A (LOC502705), mRNA.					
Rattus norvegicus	RefSeq	GI_47576756	ILMN_272363	OLR836	NM_001000406.1	NM_001000406.1		298394	47576756	NM_001000406.1	Olr836	NP_001000406.1	ILMN_1649867	0005270600	S	596	GCATGGCGGTAGGTAATGCAGTATTTTTGGGGGTCCCAGTCCTGTTCATC	5	-	60254204-60254253	5q22	Rattus norvegicus olfactory receptor 836 (Olr836), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr836	Olr836
Rattus norvegicus	RefSeq	GI_62667183-S	ILMN_272897	RGD1562521_PREDICTED	XM_001055260.1	XM_001055260.1		302403	109512113	XM_001055260.1	RGD1562521_predicted	XP_001055260.1	ILMN_1352488	0006510167	S	1528	GATATGTATGATATGCCTCCTTTTGAAAGTGGGGTTCCCAAGCCAGGTGG					PREDICTED: Rattus norvegicus similar to Ppnx (predicted) (RGD1562521_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643886	ILMN_278993	MLLT11	NM_001013912.1	NM_001013912.1		295264	62078554	NM_001013912.1	Mllt11	NP_001013934.1	ILMN_1650165	0004060079	S	225	GGCGACCCCCTCCTTGAGTATAGCACCTTCAACTTCTGGAGAGCCCCTAT	2	-	190128979-190129028	2q34	Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 (Mllt11), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	RGD1305525	RGD1305525
Rattus norvegicus	RefSeq	GI_62718115-S	ILMN_66317	LOC367462	XM_578863.1	XM_578863.1		367462	62718115	XM_578863.1	LOC367462	XP_578863.1	ILMN_1370522	0001770500	S	376	AGGACAACTGGAGTGCGGTGGTCTTAGCCCATGTGCCGATCATGAAGGAC					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC367462), mRNA.					
Rattus norvegicus	RefSeq	GI_16923979-S	ILMN_302126	TFF1	NM_057129.1	NM_057129.1		117270	16923979	NM_057129.1	Tff1	NP_476470.1	ILMN_1361555	0006130435	S	275	AAGGTCCATCCGAGAGAACTGGTTACATCAAGACTCGGCACCCCCCTCCC	20	-	9526811-9526860	20p12	Rattus norvegicus trefoil factor 1 (Tff1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Protection of epithelial surfaces of the gastrointestinal tract from proteolytic and caustic digestive agents [goid 30277] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Ps2	Ps2
Rattus norvegicus	RefSeq	GI_55741503-S	ILMN_271931	RGD1359460	NM_001006959.1	NM_001006959.1		289562	55741503	NM_001006959.1	RGD1359460	NP_001006960.1	ILMN_1368907	0006510070	S	1879	GCACACTGCATCTCCGAGCTTACACACCTGAAGGGACTGCTCTGACTGTC	14	+	33123641-33123690	14p11	Rattus norvegicus MMR_HSR1 domain containing protein RGD1359460 (RGD1359460), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]		Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC95260	MGC95260
Rattus norvegicus	RefSeq	GI_47577574	ILMN_294563	OLR51	NM_001001021.1	NM_001001021.1		405904	47577574	NM_001001021.1	Olr51	NP_001001021.1	ILMN_1348828	0005570050	S	121	CTCTCTGGGAACAGCATGATCCTGTTGGTGATCCTTCGTGAGCAGAGCCT	1	-	160513533-160513582	1q32	Rattus norvegicus olfactory receptor 51 (Olr51), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr51	Olr51
Rattus norvegicus	RefSeq	GI_11024673-S	ILMN_297518	SLC9A3R1	NM_021594.1	NM_021594.1		59114	11024673	NM_021594.1	Slc9a3r1	NP_067605.1	ILMN_1364745	0004060161	S	1365	TGTCCCTTCACCAGTCCGCCAAGGACACCACTGGGACCCTCACTAAGCAA	10	+	105254623-105254672	10q32.2	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 (Slc9a3r1), mRNA.	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence ISS]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a beta-2 adrenergic receptor [goid 31698] [evidence ISS]; Interacting selectively with a beta-2 adrenergic receptor [goid 31698] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649313-S	ILMN_277330	OMA1_PREDICTED	XM_001063646.1	XM_001063646.1		298282	109476861	XM_001063646.1	Oma1_predicted	XP_001063646.1	ILMN_1366162	0001240047	S	1441	CCGGATGCTCTGCCCATTCAGAAGCAGGAGCAGATACCACTGACATACGC				5q34	PREDICTED: Rattus norvegicus OMA1 homolog, zinc metallopeptidase (S. cerevisiae) (predicted) (Oma1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18266687-S	ILMN_283328	BNIP3L	NM_080888.1	NM_080888.1		140923	18266687	NM_080888.1	Bnip3l	NP_543164.1	ILMN_1375128	0003850039	S	3080	CCAGAGTGACATGCATCCTTCGTCTGTCTCTTCGTCAGCACTGGCGTCAT	15	-	46516695-46516744	15p12	Rattus norvegicus BCL2/adenovirus E1B interacting protein 3-like (Bnip3l), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 8634] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 8634] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope [goid 5521] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Nix	Nix
Rattus norvegicus	RefSeq	GI_8393509-S	ILMN_272122	GUSB	NM_017015.1	NM_017015.1		24434	8393509	NM_017015.1	Gusb	NP_058711.1	ILMN_1350544	0001740465	S	2101	GCAGTGCCTTAGGCTCAGTAATGTGTCCTGCTGAGAAGTGTCCCAGGTCA	12	+	27757457-27757506	12q13	Rattus norvegicus glucuronidase, beta (Gusb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate [goid 4566] [evidence IDA]; Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate [goid 4566] [evidence ISS]; Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate [goid 4566] [evidence IMP]; Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate [goid 4566] [evidence IDA]; Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate [goid 4566] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]	Ac2-223; Gus-s	Ac2-223; Gus-s
Rattus norvegicus	RefSeq	GI_62648849-S	ILMN_275531	LOC684204	XM_001069391.1	XM_001069391.1		684204	109476392	XM_001069391.1	LOC684204	XP_001069391.1	ILMN_1360827	0001170181	S	1686	AACAACTTCGAGTGGCTGCTCTGATTAGCCGTGGACTGGAATGGGTAGCC					PREDICTED: Rattus norvegicus similar to Fanconi anemia, complementation group G (LOC684204), mRNA.					
Rattus norvegicus	RefSeq	GI_27708325-S	ILMN_277255	RGD1563947_PREDICTED	XM_001069749.1	XM_001069749.1		302630	109511720	XM_001069749.1	RGD1563947_predicted	XP_001069749.1	ILMN_1351607	0002260154	S	767	AAGCCTTGCGCAGACAGCTTCCAATTACCTACCACAAAGTTGACTGGAAC				Xq21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933400A11 (predicted) (RGD1563947_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506964-S	ILMN_267145	SLC26A4	NM_019214.1	NM_019214.1		29440	9506964	NM_019214.1	Slc26a4	NP_062087.1	ILMN_1372403	0000520168	S	2689	TGTTGACCCAACAGCCTCTGTGGGCAGGTGAGTTAGGAAGGGCTAATCAC	6	-	49389326-49389375	6q16	Rattus norvegicus solute carrier family 26, member 4 (Slc26a4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]; The directed movement of inorganic anions into, out of, within or between cells. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage [goid 15698] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence IEA]; Catalysis of the transfer of chloride ions from one side of a membrane to the other [goid 15108] [evidence IDA]; Catalysis of the transfer of iodide ions from one side of a membrane to the other [goid 15111] [evidence IDA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	Pds	Pds
Rattus norvegicus	RefSeq	GI_47577416-S	ILMN_290065	OLR456	NM_001000687.1	NM_001000687.1		404892	47577416	NM_001000687.1	Olr456	NP_001000687.1	ILMN_1365930	0002060112	S	300	CTTCTCAGCTGCACTGGACTATACCGAGTGTTACCTTTTGGCTGCCATGG	3	+	68983577-68983626	3q24	Rattus norvegicus olfactory receptor 456 (Olr456), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr456	Olr456
Rattus norvegicus	RefSeq	GI_62667595-S	ILMN_48505	PRRG3_PREDICTED	XM_219845.4	XM_219845.4		293935	109511375	XM_219845.4	Prrg3_predicted	XP_219845.4	ILMN_1360061	0004150102	S	797	TGACTGCACCCCAAGAGGCCACCAGTGAGGAGGCCAGTGTCTCTTACAGT	X	-	157599946-157599995	Xq37	PREDICTED: Rattus norvegicus proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) (predicted) (Prrg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662469-S	ILMN_277718	RGD1561336_PREDICTED	XR_008774.1	XR_008774.1		498609	109504022	XR_008774.1	RGD1561336_predicted		ILMN_1361754	0001570088	S	879	GGCCAGGTGGTGCTGCTCTTGGACGGTCTGGACTGTAAATCCTGCAACGT				16p14	PREDICTED: Rattus norvegicus similar to endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 4 (predicted) (RGD1561336_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662162-S	ILMN_282072	ARHGEF3_PREDICTED	XM_001055379.1	XM_001055379.1		290541	109503671	XM_001055379.1	Arhgef3_predicted	XP_001055379.1	ILMN_1363739	0000070687	S	1418	CCCAGAGTCCTGGCACTGAGAACAGGGAGCTGCGGGGAGAAACAAAACTT				16p16	PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 3 (predicted) (Arhgef3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651973-S	ILMN_68898	ASCL4_PREDICTED	XM_235013.3	XM_235013.3		299687	109480386	XM_235013.3	Ascl4_predicted	XP_235013.3	ILMN_1372934	0006420279	S	346	GAGCGTCACAGGCCGGACCTCAACAGCGATGGCGAGTCCAAAGCGTCCTC	7	-	20079956-20080005	7q13	PREDICTED: Rattus norvegicus achaete-scute complex-like 4 (Drosophila) (predicted) (Ascl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657648-S	ILMN_60725	LOC498061	XM_579778.1	XM_579778.1		498061	62657648	XM_579778.1	LOC498061	XP_579778.1	ILMN_1353864	0000360088	S	1638	TGCCACCTGGGATCAGCAAGGGCTTCTAGGGATCTGAACTATGGTCCTGG					PREDICTED: Rattus norvegicus LOC498061 (LOC498061), mRNA.					
Rattus norvegicus	RefSeq	GI_62647598-S	ILMN_51152	LOC502840	XM_578340.1	XM_578340.1		502840	62647598	XM_578340.1	LOC502840	XP_578340.1	ILMN_1361416	0004150497	S	401	GGGACTTGGGGGTTTAACTGTGGCCTTAGAGCAGGTGATGGGAGGGCTGA					PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC502840), mRNA.					
Rattus norvegicus	RefSeq	GI_47577070-S	ILMN_293129	OLR306	NM_001000766.1	NM_001000766.1		405040	47577070	NM_001000766.1	Olr306	NP_001000766.1	ILMN_1369451	0004010519	S	390	GCACTACAGTTCTAGAATGAGCCGACAGCTGTGTGGGGCACTGGCCATAG	1	+	200585065-200585114	1q41	Rattus norvegicus olfactory receptor 306 (Olr306), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr306	Olr306
Rattus norvegicus	RefSeq	GI_62641579-S	ILMN_296652	LOC293589	XM_001057183.1	XM_001057183.1		293589	109463114	XM_001057183.1	LOC293589	XP_001057183.1	ILMN_1352785	0005420095	S	1247	GGAGTCCTGCCTCTGTGGCTTGGTCAGGAGGTTTTCTCAGCCTCAAGAAG				1q41	PREDICTED: Rattus norvegicus putative GTP-binding protein (LOC293589), mRNA.					
Rattus norvegicus	RefSeq	GI_6978876-S	ILMN_284275	GATA1	NM_012764.1	NM_012764.1		25172	6978876	NM_012764.1	Gata1	NP_036896.1	ILMN_1357000	0005690494	S	1585	GGGTTTCACTATGCAGCCGAGGCTGGCTTTGAATTCCCTATGTAGTCCAG	X	+	26571802-26571851	Xq13	Rattus norvegicus GATA binding protein 1 (Gata1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Eryf1	Eryf1
Rattus norvegicus	RefSeq	GI_62652746-S	ILMN_61975	MAP3K7IP1_PREDICTED	XM_243623.3	XM_243623.3		315139	62652746	XM_243623.3	Map3k7ip1_predicted	XP_243623.3	ILMN_1363788	0003520364	S	1422	GCCTCCACCTTGGATGAAGCCACTCCTACTCTCACTAACCAGAGCCCCAC					PREDICTED: Rattus norvegicus mitogen-activated protein kinase kinase kinase 7 interacting protein 1 (predicted) (Map3k7ip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646842-S	ILMN_273915	LOC680561	XR_005795.1	XR_005795.1		680561	109471731	XR_005795.1	LOC680561		ILMN_1350569	0005340068	S	431	CACGGGAAGCTGGAGATGGTCCTGAACAAGTCAGAGCTCAATTACAAGCC	4	-	31472001-31472050	4q13	PREDICTED: Rattus norvegicus hypothetical protein LOC680561 (LOC680561), mRNA.					
Rattus norvegicus	RefSeq	GI_62645397-S	ILMN_56935	ZNF408_PREDICTED	XM_230283.3	XM_230283.3		311192	62645397	XM_230283.3	Znf408_predicted	XP_230283.3	ILMN_1357076	0002680563	S	1083	CCGCCACCTCAAGTCCCACATGACAGACAAGCCGTACCGATGCCCCATCT					PREDICTED: Rattus norvegicus zinc finger protein 408 (predicted) (Znf408_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948487-S	ILMN_275247	SIRT5	NM_001004256.1	NM_001004256.1		306840	51948487	NM_001004256.1	Sirt5	NP_001004256.1	ILMN_1349757	0005130270	S	1006	CCTGGAGCACAGATGCAGGGCACTGACAGGAGAAGTGGTTTTGTGGATGG	17	-	27135897-27135946	17p12	Rattus norvegicus sirtuin (silent mating type information regulation 2 homolog) 5 (S. cerevisiae) (Sirt5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing [goid 5677] [evidence IEA]	Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin [goid 6342] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6476] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the removal of one or more acetyl groups from a histone, requiring NAD [goid 17136] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MGC93823	MGC93823
Rattus norvegicus	RefSeq	GI_62663516-S	ILMN_59570	LOC364685	XM_577562.1	XM_577562.1		364685	62663516	XM_577562.1	LOC364685	XP_577562.1	ILMN_1356161	0006350133	S	167	GATGCAGGCCAACAACGCAAAGGCATCCAAGGTTCAAACCAAGTCTGCTT				17p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC364685), mRNA.					
Rattus norvegicus	RefSeq	GI_8393895-S	ILMN_294476	PACSIN1	NM_017294.1	NM_017294.1		29704	8393895	NM_017294.1	Pacsin1	NP_058990.1	ILMN_1359407	0004480088	S	1222	AGTGGTCAGACGATGAGAGCGGAAACCCCTTTGGGGGGAACGAGGCCAAT	20	+	5921024-5921073	20p12	Rattus norvegicus protein kinase C and casein kinase substrate in neurons 1 (Pacsin1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport [goid 30137] [evidence ISS]; A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport [goid 30137] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of endocytosis [goid 45806] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of endocytosis [goid 45806] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651859	ILMN_63214	LOC500815	XM_576202.1	XM_576202.1		500815	62651859	XM_576202.1	LOC500815	XP_576202.1	ILMN_1651120	0003520020	S	1572	GGCAGCAAGCAGTACCATATAAAAGGCTTCCCTCCTGCAGATAATGGTGC				7q13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (LOC500815), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27678467-S	ILMN_289364	RGD1565856_PREDICTED	XM_001068008.1	XM_001068008.1		293156	109462543	XM_001068008.1	RGD1565856_predicted	XP_001068008.1	ILMN_1357535	0007040121	S	823	GAGATTCGCAGGACCCGAGCACACCTAATGCCCTGAGGATGATCAGCTTG				1q32	PREDICTED: Rattus norvegicus similar to Hypothetical 55.1 kDa protein F09G8.5 in chromosome III (predicted) (RGD1565856_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647111-S	ILMN_50981	LOC500094	XM_575445.1	XM_575445.1		500094	62647111	XM_575445.1	LOC500094	XP_575445.1	ILMN_2040808	0005220240	S	3	CAGGTAGTAGCTGTTGCCACTCACCAAAGCCCTGTCAGACCTGGCCTATG				4q22	PREDICTED: Rattus norvegicus similar to T cell receptor variable region:SUBUNIT=beta:ISOTYPE=16 (LOC500094), mRNA.					
Rattus norvegicus	RefSeq	GI_21070935-S	ILMN_283555	SCD1	NM_139192.1	NM_139192.1		246074	21070935	NM_139192.1	Scd1	NP_631931.1	ILMN_1374191	0006400050	S	4435	GCTCTTCCCAGAGATCTACAACTATGACCCAGCCAAAGTGCAAGCCTACC	1	-	249458904-249458953	1q54	Rattus norvegicus stearoyl-Coenzyme A desaturase 1 (Scd1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence TAS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence TAS]; Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence IDA]; Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079124-S	ILMN_295753	RGD1311324	NM_001014195.1	NM_001014195.1		362711	62079124	NM_001014195.1	RGD1311324	NP_001014217.1	ILMN_1357101	0000940373	S	1956	TTCAGAATGGCCAGCACCACGGGGGCCAGCAACAGCCTCACTTCTACTAG	6	-	25485453-25485502	6q14	Rattus norvegicus similar to hypothetical protein FLJ20254 (RGD1311324), mRNA.					
Rattus norvegicus	RefSeq	GI_62638448-S	ILMN_49992	LOC499003	XM_574296.1	XM_574296.1		499003	62638448	XM_574296.1	LOC499003	XP_574296.1	ILMN_1357875	0005390619	S	1350	AAAATTTCATCCGTTGCTCTGCAGGAGAATGGTCCTACAGGTGATCGAAG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC499003), mRNA.					
Rattus norvegicus	RefSeq	GI_21070951-S	ILMN_282676	CRHBP	NM_139183.1	NM_139183.1		29625	21070951	NM_139183.1	Crhbp	NP_631922.1	ILMN_1355385	0005050398	S	1319	GTGTGGCAAGGGCAGGTGCTCCAAAGAGAAAGAAATGGCAGCACTCACCG	2	-	25801611-25801660	2q12	Rattus norvegicus corticotropin releasing hormone binding protein (Crhbp), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEP]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]	Interacting selectively with adrenocorticotropin-releasing hormone [goid 17047] [evidence IDA]; Interacting selectively with adrenocorticotropin-releasing hormone [goid 17047] [evidence ISS]; Interacting selectively with adrenocorticotropin-releasing hormone [goid 17047] [evidence IEA]; Interacting selectively with adrenocorticotropin-releasing hormone [goid 17047] [evidence IEA]	Crfbp	Crfbp
Rattus norvegicus	RefSeq	GI_9507190-S	ILMN_300321	TLE4	NM_019141.1	NM_019141.1		25565	9507190	NM_019141.1	Tle4	NP_062014.1	ILMN_1373497	0001170605	S	2437	CTGGACTCCTCCTCATAGCACTTTGCGCTGTTGTACTTTTCTGTTCACCC	1	-	217636219-217636268	1q43	Rattus norvegicus transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) (Tle4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence NAS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Esp2	Esp2
Rattus norvegicus	RefSeq	GI_62657009-S	ILMN_60359	RGD1306682_PREDICTED	XM_340892.3	XM_340892.3		360617	109488938	XM_340892.3	RGD1306682_predicted	XP_340893.1	ILMN_1363198	0002480537	S	230	GGGCCTTCGAGATTGAGATCAATGGGCAGCTGGTGTTCTCCAAGCTGGAG	10	-	87243599-87243648	10q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810046J19 (predicted) (RGD1306682_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650570	ILMN_66326	DUS4L_PREDICTED	XM_345654.3	XM_345654.3		366593	109478118	XM_345654.3	Dus4l_predicted	XP_345655.3	ILMN_1651062	0002370014	S	832	GGGTATGAAGAAACCCCACTGAAATGTGTCTGGGACTGGGTTGACATCGC	6	-	49510679-49510728	6q16	PREDICTED: Rattus norvegicus dihydrouridine synthase 4-like (S. cerevisiae) (predicted) (Dus4l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506754-A	ILMN_300433	GRIK2	NM_019309.1	NM_019309.1		54257	9506754	NM_019309.1	Grik2	NP_062182.1	ILMN_1376564	0004610139	S	4215	GTTTCTGTCAGGGGTGTGAGGTCAAGCATGAACGGTAGTGCGTGTGCACC				20q13	Rattus norvegicus glutamate receptor, ionotropic, kainate 2 (Grik2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence IMP]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity [goid 48172] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence IDA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence TAS]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15277] [evidence IDA];  [goid 15277] [evidence ISS];  [goid 15277] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a ubiquitin conjugating enzyme, any of the E2 proteins [goid 31624] [evidence IPI]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 1127911] [evidence IPI]	GluR6	GluR6
Rattus norvegicus	RefSeq	GI_62659338-S	ILMN_300448	CHI3L1	NM_053560.1	NM_053560.1		89824	61657900	NM_053560.1	Chi3l1	NP_446012.1	ILMN_1359657	0002070286	S	1329	GGCTCGGACCTGGTGAACAGGGAAATAGGGTAGGACGGTGGGATTGTGAA	13	+	47147262-47147311	13q13	Rattus norvegicus chitinase 3-like 1 (Chi3l1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues [goid 6032] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the random hydrolysis of N-acetyl-beta-D-glucosaminide 1,4-beta-linkages in chitin and chitodextrins [goid 4568] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Functions in the storage of nutritious substrates [goid 45735] [evidence IEA]	MGC109420	MGC109420
Rattus norvegicus	RefSeq	GI_62641042-S	ILMN_287735	RNF121_PREDICTED	XM_001068282.1	XM_001068282.1		308871	109462525	XM_001068282.1	Rnf121_predicted	XP_001068282.1	ILMN_1364199	0002370528	S	2084	CCTGGAAGTTTGAAGAAAGTGGGCGGGCATCATGGGTCAGCAGCACTGGG				1q32	PREDICTED: Rattus norvegicus ring finger protein 121 (predicted) (Rnf121_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661107-S	ILMN_59394	UBE2E2_PREDICTED	XM_341288.2	XM_341288.2		361013	62661107	XM_341288.2	Ube2e2_predicted	XP_341289.2	ILMN_1349255	0000840239	S	825	ATAAGACCAGGGGAACGGCCTGAGTGGTATGTGATGAGGCCAGGGAGAGA				15p16	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) (predicted) (Ube2e2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644886-S	ILMN_287919	GLT6D1_PREDICTED	XM_001078072.1	XM_001078072.1		296577	109469604	XM_001078072.1	Glt6d1_predicted	XP_001078072.1	ILMN_1365026	0004050735	S	948	CCCCTATGAGAGGAGACCTACATCAGCGGCCTACATCCCCTTTGGCCTGG				3p13	PREDICTED: Rattus norvegicus glycosyltransferase 6 domain containing 1 (predicted) (Glt6d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640824-S	ILMN_263745	RGD1566271_PREDICTED	XR_008499.1	XR_008499.1		365300	109462253	XR_008499.1	RGD1566271_predicted		ILMN_1373604	0000050059	S	326	AGAATCAGTGGAGCAAGCCCAAAGATGCGCAAGGTGGTGCAGCTGCTTCA				1q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (predicted) (RGD1566271_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.9239	ILMN_269931	SLC45A3_PREDICTED	XM_001059048.1	XM_001059048.1		304785	109498600	XM_001059048.1	Slc45a3_predicted	XP_001059048.1	ILMN_1530451	0000380341	S	1941	ATTTACTTTGCTACACAGGTAGTGTTTGACAAGAATGACTTGGCCAAATA				13q13	PREDICTED: Rattus norvegicus solute carrier family 45, member 3 (predicted) (Slc45a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659302-S	ILMN_269931	SLC45A3_PREDICTED	XM_001059048.1	XM_001059048.1		304785	109498600	XM_001059048.1	Slc45a3_predicted	XP_001059048.1	ILMN_1371059	0004810332	S	1759	TGGGTGAGCCACCTGAAGCCAAGGTTGTTACTGGACGGGGCATTTGCCTG				13q13	PREDICTED: Rattus norvegicus solute carrier family 45, member 3 (predicted) (Slc45a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639450-S	ILMN_55824	LOC308494	XM_238783.3	XM_238783.3		308494	62639450	XM_238783.3	LOC308494	XP_238783.3	ILMN_1366534	0003850519	S	2580	TTAGCAGGAGGCGGGACTTCTGGCGGACGTGACTGTGGCCCTGCCCGTTA					PREDICTED: Rattus norvegicus similar to SPBPJ4664.02 (LOC308494), mRNA.					
Rattus norvegicus	RefSeq	GI_47577780-S	ILMN_286367	OLR1241	NM_001000449.1	NM_001000449.1		300566	47577780	NM_001000449.1	Olr1241	NP_001000449.1	ILMN_1359565	0003130546	S	426	GAGCCTTATGTTTGGTTCATACATGATGGCATTCTCTGGTGCCATGGCTC	8	+	40620373-40620422	8q22	Rattus norvegicus olfactory receptor 1241 (Olr1241), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1241	Olr1241
Rattus norvegicus	RefSeq	GI_62647759-S	ILMN_293215	RAB43	NM_001024331.1	NM_001024331.1		500249	66730538	NM_001024331.1	Rab43	NP_001019502.1	ILMN_1358940	0005390239	S	865	AGCCTGGATGCTGGGTAGGAAGGGAAATGCAGGGAGTGTATCCTGTGCAG	4	-	121980184-121980233	4q34	Rattus norvegicus RAB43, member RAS oncogene family (Rab43), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638239-S	ILMN_271814	RGD1562920_PREDICTED	XM_001071113.1	XM_001071113.1		292486	109460463	XM_001071113.1	RGD1562920_predicted	XP_001071113.1	ILMN_1360255	0003940039	S	1450	TGGACCCAGGAGAATGCAGGGTAGGTGGTTCCGGTGGAGGTAGAATCAGG				1p13	PREDICTED: Rattus norvegicus similar to Aig1 protein (predicted) (RGD1562920_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644975-S	ILMN_58386	LOC499784	XM_575119.1	XM_575119.1		499784	62644975	XM_575119.1	LOC499784	XP_575119.1	ILMN_1354531	0001660014	S	168	TTCCCCAGGTCCCGGAAGCGCCACGTTCCAGATCACAGTTCCTTGGCCTT					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (LOC499784), mRNA.					
Rattus norvegicus	RefSeq	GI_57012385-S	ILMN_267375	RT1-O	NM_001008856.1	NM_001008856.1		24751	57012385	NM_001008856.1	RT1-O	NP_001008856.1	ILMN_1350686	0002060551	S	496	CAGCAACAGTGTCCACAGCTGGGACTCCTCTCAGGAGACTTGAAAAGGTG	20	+	2801586-2801635	20p12	Rattus norvegicus RT1 class Ib, locus H2-Q-like, grc region (RT1-O), mRNA.				Qlikea; RATQLIKEA; RT1-O1	Qlikea; RATQLIKEA; RT1-O1
Rattus norvegicus	RefSeq	GI_62078686-S	ILMN_287718	LOC304131	NM_001013979.1	NM_001013979.1		304131	62078686	NM_001013979.1	LOC304131	NP_001014001.1	ILMN_1360224	0000460519	S	1340	CTGGGTTAACACGCAGTGGACACGTTTGCGTTGGCGGTGTGGGTCTTTGG	11	+	27360512-27360561	11q11	Rattus norvegicus similar to C21ORF7 (LOC304131), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_61097909-S	ILMN_287713	CD69	NM_134327.1	NM_134327.1		29187	61097909	NM_134327.1	Cd69	NP_599154.1	ILMN_1360103	0002680673	S	1411	CAGGACATACACCTTGTGGTTGGACCCTGGAATAACTCCCATCTTGTCCC	4	-	166527826-166527875	4q42	Rattus norvegicus Cd69 molecule (Cd69), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 1867] [evidence TAS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929005-S	ILMN_287014	RAB2A	NM_031718.1	NM_031718.1		65158	13929005	NM_031718.1	Rab2a	NP_113906.1	ILMN_1369180	0002850239	S	572	ATGCTGCTACCAATGCATCTCACGGAGGCAACCAAGGAGGGCAGCAGGCA	5	+	22452131-22452180	5q13	Rattus norvegicus RAB2A, member RAS oncogene family (Rab2a), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577266-S	ILMN_267228	OLR397	NM_001000380.1	NM_001000380.1		296663	47577266	NM_001000380.1	Olr397	NP_001000380.1	ILMN_1352041	0001340056	S	453	GTCTAATGCCTGTGGCCTTGTACATACCCTTCTCTTGACTCGTCTATCTC	3	+	15687344-15687393	3p11	Rattus norvegicus olfactory receptor 397 (Olr397), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr397	Olr397
Rattus norvegicus	RefSeq	GI_12018281-S	ILMN_281012	NDUFV3L	NM_022607.1	NM_022607.1		64539	12018281	NM_022607.1	Ndufv3l	NP_072129.1	ILMN_2039465	0007210102	S	877	AGAGTTTCCACACAGCCCACAACCGGAACACAAGAGGCCAGCGCAGAACT	20	+	9957069-9957118	20p12	Rattus norvegicus NADH dehydrogenase (ubiquinone) flavoprotein 3-like (Ndufv3l), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]		Mipp65	Mipp65
Rattus norvegicus	RefSeq	GI_62659645-S	ILMN_262715	MAEL_PREDICTED	XM_001075736.1	XM_001075736.1		364039	109498971	XM_001075736.1	Mael_predicted	XP_001075736.1	ILMN_1363991	0005700139	S	1195	GGTTATTACCCATCTGGGGTGAAAATTTCGGGCTCGAACAGCAGCGTTCG				13q23	PREDICTED: Rattus norvegicus maelstrom homolog (Drosophila) (predicted) (Mael_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27690329-S	ILMN_271603	OTOP3_PREDICTED	XM_001081677.1	XM_001081677.1		287821	109492217	XM_001081677.1	Otop3_predicted	XP_001081677.1	ILMN_1354783	0001570594	S	1485	GGAGCCTGTGATCTCTGGTGTGCCGGAGAAGCAGGATATTGAGCTACCCC				10q32.3	PREDICTED: Rattus norvegicus otopetrin 3 (predicted) (Otop3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659084-S	ILMN_65178	GOLGA3_PREDICTED	XM_231418.3	XM_231418.3		312077	62659084	XM_231418.3	Golga3_predicted	XP_231418.3	ILMN_1371419	0001740161	S	5737	CACTGGTGGAGGCAGCCTTGGGCTGTGGGTTATAGGCTGCAAACACTGTG				12q16	PREDICTED: Rattus norvegicus golgi autoantigen, golgin subfamily a, 3 (predicted) (Golga3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651249-S	ILMN_54278	LOC500720	XM_580113.1	XM_580113.1		500720	62651249	XM_580113.1	LOC500720	XP_580113.1	ILMN_1364821	0005420014	S	843	CAAACCGAATCCTTGTAGAGTATGCAATGACAGAGGTAGTGACCAGTGCC					PREDICTED: Rattus norvegicus LOC500720 (LOC500720), mRNA.					
Rattus norvegicus	RefSeq	GI_47059184-S	ILMN_300673	CUTA	NM_212494.1	NM_212494.1		294288	47059184	NM_212494.1	Cuta	NP_997659.1	ILMN_1356829	0003130487	S	492	TGTCCGATCTGTGCACCCTTATGAAGTTGCCGAGGTGATCGCACTGCCCG	20	-	5175289-5175333:5175576-5175580	20p12	Rattus norvegicus cutA divalent cation tolerance homolog (E. coli) (Cuta), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	CutA1	CutA1
Rattus norvegicus	RefSeq	GI_47577062-S	ILMN_272197	OLR303	NM_001000239.1	NM_001000239.1		293601	47577062	NM_001000239.1	Olr303	NP_001000239.1	ILMN_1363879	0001570731	S	591	GACTGTTGTTGCAGACATGTTCCTGACAGGCCTGAACTTCCTATTGACCA	1	-	200483086-200483135	1q41	Rattus norvegicus olfactory receptor 303 (Olr303), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr303	Olr303
Rattus norvegicus	RefSeq	GI_62648023-S	ILMN_48623	RGD1304842_PREDICTED	XM_232266.4	XM_232266.4		312634	109472460	XM_232266.4	RGD1304842_predicted	XP_232266.2	ILMN_1356538	0000940706	S	2316	AACTCTCAGAACTGTGTTGGAGGGTACAGGGGGTTCCCAGGGCCTCGTGA	4	+	149164660-149164709	4q42	PREDICTED: Rattus norvegicus similar to FLJ22405 protein (predicted) (RGD1304842_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639690-S	ILMN_272137	CPT1C	XM_001078512.1	XM_001078512.1		308579	109461882	XM_001078512.1	Cpt1c	XP_001078512.1	ILMN_1371862	0005080438	S	2388	CTCCAGCAAGCAATCAAGCACAGAAACAGACTCACACCGGCTGGGGCAGC				1q22	PREDICTED: Rattus norvegicus carnitine palmitoyltransferase 1c (Cpt1c), mRNA.			Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659699-S	ILMN_64835	LOC498271	XM_579806.1	XM_579806.1		498271	62659699	XM_579806.1	LOC498271	XP_579806.1	ILMN_1358805	0002470010	S	551	TGCAGCCGGGACACGCTTAGCAGAGGGAGACAGGAGAGTGACAGAAGACA					PREDICTED: Rattus norvegicus LOC498271 (LOC498271), mRNA.					
Rattus norvegicus	RefSeq	GI_62647862-S	ILMN_262964	LOC500265	XR_007267.1	XR_007267.1		500265	109472422	XR_007267.1	LOC500265		ILMN_1361934	0005570093	S	1640	CAGTATTCAGTTGAGTGTGGAGAAAGGGTCCTCCCCTTCTAAGAGCCACC	4	-	130736899-130736948	4q34	PREDICTED: Rattus norvegicus nucleoporin 50-like (LOC500265), misc RNA.					
Rattus norvegicus	RefSeq	GI_62665914-S	ILMN_49390	LOC365556	XM_345097.2	XM_345097.2		365556	62665914	XM_345097.2	LOC365556	XP_345098.2	ILMN_1370726	0005420204	S	190	AAGCTGGCGCTGTGAAGAAGGGGCTACCCTTTTGCCGTCACATCGATGAC				20p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L5 (LOC365556), mRNA.					
Rattus norvegicus	RefSeq	GI_56676359-A	ILMN_275600	DHODH	NM_001008553.1	NM_001008553.1		65156	56676359	NM_001008553.1	Dhodh	NP_001008553.1	ILMN_1376991	0003440372	S	1213	GATGCCATTGGAGCAGATCATCGGAGGTGACCATACGTGCCAGAAGTCCC	19	-	39463383-39463403:39463404-39463432	19q12	Rattus norvegicus dihydroorotate dehydrogenase (Dhodh), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the formation of pyrimidine bases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors [goid 6207] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6221] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate [goid 6222] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (S)-dihydroorotate + acceptor = orotate + reduced acceptor [goid 4152] [evidence NAS]; Catalysis of the reaction: (S)-dihydroorotate + O2 = orotate + H2O2 [goid 4158] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666891-S	ILMN_289824	RGD1560892_PREDICTED	XR_007808.1	XR_007808.1		302730	109511848	XR_007808.1	RGD1560892_predicted		ILMN_1360476	0004540324	S	108	GCCACAGAGTCTACAGCCACTCTTACCATTGCCATGGAACTGGTTTCTGC				Xq22	PREDICTED: Rattus norvegicus similar to nuclear autoantigenic sperm protein (predicted) (RGD1560892_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242238-S	ILMN_296797	MST1	NM_024352.1	NM_024352.1		24566	13242238	NM_024352.1	Mst1	NP_077328.1	ILMN_1349185	0001980576	S	1934	ACCGGAGACGAGTACAAGAGAGTGAGATATGCACCGAGGGGTTGCTGGCC	8	+	113352344-113352393	8q32	Rattus norvegicus Macrophage stimulating 1 (hepatocyte growth factor-like) (Mst1), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEP]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	E2F2	E2F2
Rattus norvegicus	RefSeq	GI_62654943-S	ILMN_263826	LONRF2_PREDICTED	XM_001058206.1	XM_001058206.1		301361	109487012	XM_001058206.1	Lonrf2_predicted	XP_001058206.1	ILMN_1373428	0004610537	S	2523	CACACGCAAGCTGAACAGTCGCCAAGAGATGGCTAACAACGCACAGAGAG				9q21	PREDICTED: Rattus norvegicus LON peptidase N-terminal domain and ring finger 2 (predicted) (Lonrf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661968-S	ILMN_284012	RGD1564473_PREDICTED	XR_008424.1	XR_008424.1		364407	109502622	XR_008424.1	RGD1564473_predicted		ILMN_1358057	0005720324	S	125	GGAGCAGAGACTGTAGAGAGCTGAGACCAAAAAGGACTGTGCTGGAGCTG				15p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1564473_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11693147-A	ILMN_285748	ASCL1	NM_022384.1	NM_022384.1		64186	11693147	NM_022384.1	Ascl1	NP_071779.1	ILMN_1376443	0006130333	S	1445	GGCTGACAGGCCCTACTGGGAATGGACTTTGGAAGCAGGATGGCAGGAGA				7q13	Rattus norvegicus achaete-scute complex homolog 1 (Drosophila) (Ascl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into a neuroblast cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7400] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into a neuroblast cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7400] [evidence ISS]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence IEA]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of association neurons. Association neurons are cells located in the dorsal portion of the spinal cord that integrate sensory input. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21527] [evidence ISS]; The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of oligodendrocytes. Oligodendrocytes are non-neuronal cells. The primary function of oligodendrocytes is the myelination of nerve axons in the central nervous system. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21529] [evidence ISS]; The process whereby a cell becomes capable of differentiating autonomously into an oligodendrocyte in an environment that is neutral with respect to the developmental pathway [goid 21530] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into an oligodendrocyte [goid 21779] [evidence ISS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway [goid 45747] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system [goid 48709] [evidence ISS]; The process whereby in the subpallium, the developmental fate of a cell becomes restricted such that it will develop into a neuron. The subpallium is the base region of the telencephalon [goid 60163] [evidence IEA]; The process whereby in the subpallium, the developmental fate of a cell becomes restricted such that it will develop into a neuron. The subpallium is the base region of the telencephalon [goid 60163] [evidence ISS]; The process controlling the timing and/or rate at which a relatively unspecialized cell in the subpallium acquires features of a neuron. The subpallium is the base region of the telencephalon [goid 60165] [evidence IEA]; The process controlling the timing and/or rate at which a relatively unspecialized cell in the subpallium acquires features of a neuron. The subpallium is the base region of the telencephalon [goid 60165] [evidence ISS]; The biological process whose specific outcome is the progression of the olfactory pit from an initial condition to its mature state. This process begins with the formation of the olfactory pit, which is an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx [goid 60166] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]	Mash1	Mash1
Rattus norvegicus	RefSeq	GI_62640977-S	ILMN_63623	LOC502353	XM_577823.1	XM_577823.1		502353	62640977	XM_577823.1	LOC502353	XP_577823.1	ILMN_1374226	0002030022	S	1071	TGGGTGTGCTGCTGTGAAGATGACCTGGGAACGTTGATGGCGTGTCTCTC				1q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (LOC502353), mRNA.					
Rattus norvegicus	RefSeq	GI_13591863-S	ILMN_264835	VGF	NM_030997.1	NM_030997.1		29461	13591863	NM_030997.1	Vgf	NP_112259.1	ILMN_1364414	0001850551	S	2326	ACCAGACCTGTCAGACTTCTTTGGGGTCTGATCCTGGGGCCAGCCCAGGC	12	+	20906015-20906064	12q12	Rattus norvegicus VGF nerve growth factor inducible (Vgf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEA]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The physiological process by which dietary excess is sensed by the central nervous system and results in a reduction in food intake and increased energy expenditure [goid 2021] [evidence ISS]; The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence IEA]; The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow [goid 43084] [evidence IDA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence ISS]	The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IEA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19424233-S	ILMN_277667	ATP5G2	NM_133556.1	NM_133556.1		171082	19424233	NM_133556.1	Atp5g2	NP_598240.1	ILMN_1353161	0004280524	S	142	AGTTGCTTGGCAGTCCGGCGGCCTCTGACCTCGCTTATCCCTAGCCGCAG	7	-	141415315-141415364	7q36	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 2 (Atp5g2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667217-S	ILMN_266205	LOC685782	XM_001065244.1	XM_001065244.1		685782	109499514	XM_001065244.1	LOC685782	XP_001065244.1	ILMN_1360971	0004480286	S	1390	GCCAAGCACTGTGTCTATACCCAGGTGACCAGACTTTGCAGGTGCTGGCA	14	-	15654688-15654737	14p22	PREDICTED: Rattus norvegicus similar to PRAME family member 9 (LOC685782), mRNA.					
Rattus norvegicus	RefSeq	GI_20806160-S	ILMN_287794	GPR116	NM_139110.1	NM_139110.1		245977	20806160	NM_139110.1	Gpr116	NP_620810.1	ILMN_1365711	0000430601	S	4250	CAGGAGCTCTCAGAAATAGGGCCCCTGCCAAGAAAAGGGACCCATATCCA	9	-	13218601-13218650	9q12	Rattus norvegicus G protein-coupled receptor 116 (Gpr116), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Ig-Hepta; Gprhep	Ig-Hepta; Gprhep
Rattus norvegicus	RefSeq	GI_57222331-S	ILMN_280189	BIN2A	NM_001009524.1	NM_001009524.1		494244	57222331	NM_001009524.1	Bin2a	NP_001009524.1	ILMN_1360965	0004920092	S	2291	TGCCAGGCGTGGGTTCCACCATCCACCTTCTCACTTGACAGCAAACCCAG	8	-	26530779-26530828	8q13	Rattus norvegicus beta-galactosidase-like protein (Bin2a), mRNA.	A multimeric enzyme complex that in E. coli is a heterooctamer made up of four alpha subunits and four beta subunits. Catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides [goid 9341] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides [goid 4565] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577056-S	ILMN_267998	OLR300	NM_001000237.1	NM_001000237.1		293599	47577056	NM_001000237.1	Olr300	NP_001000237.1	ILMN_1374517	0003360253	S	796	TCTGGGCTCCTGGACAAAGTCATTGCTGTTCTGTATACCACTGTGACCCC	1	+	200429101-200429150	1q41	Rattus norvegicus olfactory receptor 300 (Olr300), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr300	Olr300
Rattus norvegicus	RefSeq	GI_27691187-S	ILMN_268741	RGD1311318_PREDICTED	XM_001062078.1	XM_001062078.1		295073	109466710	XM_001062078.1	RGD1311318_predicted	XP_001062078.1	ILMN_1374357	0002230010	S	503	GGGGTACCTTGGCAGCCACAGTGACTCAACTGCTACAGAATGATCCAAAT				2q31	PREDICTED: Rattus norvegicus similar to Arylacetamide deacetylase (AADAC) (predicted) (RGD1311318_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652206-S	ILMN_265921	LOC688338	XM_001081855.1	XM_001081855.1		688338	109519627	XM_001081855.1	LOC688338	XP_001081855.1	ILMN_1376277	0002760703	S	346	ATGATGCTCCAGTCCTGTTCCGGGCCAACCTGTCGCACTCCGGGGGTCTT					PREDICTED: Rattus norvegicus similar to glucosamine (N-acetyl)-6-sulfatase (LOC688338), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2 [goid 8484] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667437-S	ILMN_62720	LOC501649	XM_580224.1	XM_580224.1		501649	62667437	XM_580224.1	LOC501649	XP_580224.1	ILMN_1358180	0007000113	S	353	GCCTCAGGGGGTAGAAGTGTTTGCCCGGAGAGCTAGAGAGGACTTGAGTT					PREDICTED: Rattus norvegicus LOC501649 (LOC501649), mRNA.					
Rattus norvegicus	RefSeq	GI_62645036-S	ILMN_265190	RGD1307927_PREDICTED	XM_001054730.1	XM_001054730.1		311913	109469813	XM_001054730.1	RGD1307927_predicted	XP_001054730.1	ILMN_1355638	0002100131	S	2898	CTCTATGCCCAACCTCTTTGGCCAGATCCCAATGGGTGCCCACACTAGTC				3q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6030446I19 gene (predicted), transcript variant 2 (RGD1307927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666801-S	ILMN_275295	ASB11_PREDICTED	XM_001067257.1	XM_001067257.1		302666	109511697	XM_001067257.1	Asb11_predicted	XP_001067257.1	ILMN_1351689	0006760053	S	1473	GTAGGGATGGAGAAATGGCTGAGGAGTTACGCTCGCTGCTCTTGCTGAAG				Xq21	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing protein 11 (predicted) (Asb11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664015-S	ILMN_51478	LOC498815	XM_579873.1	XM_579873.1		498815	62664015	XM_579873.1	LOC498815	XP_579873.1	ILMN_1361051	0006040369	S	935	GAGACACTGGCAGCTTCATCCCTCGCCTTTCCCAGAGCAGCGGATCAGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by AY771707 (LOC498815), mRNA.					
Rattus norvegicus	Unigene	Rn.34193	ILMN_161543	RN.34193	Rn.34193		Rn.34193		20420455	BQ203990			ILMN_1530193	0000110450	S	596	ATAGGGATCGTTATCCTTGATTTGCTTTTCCTTACAGGGTTTTTAAAATT					UI-R-DN1-cmv-c-19-0-UI.s1 UI-R-DN1 Rattus norvegicus cDNA clone UI-R-DN1-cmv-c-19-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62666949	ILMN_265306	VSIG4	NM_001025004.1	NM_001025004.1		312102	68163442	NM_001025004.1	Vsig4	NP_001020175.1	ILMN_1650454	0002100253	S	575	GGACCACTACTGTCCCAGGAGGGAAGCTGCCGATCTTTGCCATAATCTTG	X	-	83874979-83875011:83882632-83882648	Xq31	Rattus norvegicus V-set and immunoglobulin domain containing 4 (Vsig4), mRNA.		Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-2 production [goid 32703] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-2 production [goid 32703] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108984	MGC108984
Rattus norvegicus	RefSeq	GI_62659391-S	ILMN_278352	GPR25_PREDICTED	XM_001064036.1	XM_001064036.1		363993	109498697	XM_001064036.1	Gpr25_predicted	XP_001064036.1	ILMN_1367997	0003120279	S	975	AGATGACAGCTCGGTGTTCTGGGGCCGATCCTCAAAGGCGAACTCTGCTT				13q13	PREDICTED: Rattus norvegicus G protein-coupled receptor 25 (predicted) (Gpr25_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62543542-S	ILMN_287771	TSPAN12	NM_001015026.1	NM_001015026.1		362326	62543542	NM_001015026.1	Tspan12	NP_001015026.1	ILMN_1374598	0000840148	S	2008	CTCCCAACCACAGAGCGTTTAAATGCCGTCTTGCTTCTGTATTGTTACCC	4	-	48085317-48085366	4q22	Rattus norvegicus tetraspanin 12 (Tspan12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109305	MGC109305
Rattus norvegicus	RefSeq	GI_13928795-S	ILMN_298211	PXMP2	NM_031587.1	NM_031587.1		29533	13928795	NM_031587.1	Pxmp2	NP_113775.1	ILMN_1358106	0005700458	S	610	TACACCGTGGATGAGGTGTGGGGAGATCCAACCACCAGCAGGAGAGAGCA	12	+	46550397-46550446	12q16	Rattus norvegicus peroxisomal membrane protein 2 (Pxmp2), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	T44	T44
Rattus norvegicus	RefSeq	GI_62666918-S	ILMN_56072	LOC367830	XM_346316.2	XM_346316.2		367830	62666918	XM_346316.2	LOC367830	XP_346317.2	ILMN_1357980	0005220040	S	2702	CGCCTTAGTACTGCGCAAACTGGTCTCCTTAACACTGGTGGGGCCAGAGG				Xq31	PREDICTED: Rattus norvegicus similar to FAM48A protein (LOC367830), mRNA.					
Rattus norvegicus	RefSeq	GI_62656127-S	ILMN_49710	RGD1561277_PREDICTED	XM_579757.2	XM_579757.2		497911	109488176	XM_579757.2	RGD1561277_predicted	XP_579757.2	ILMN_1363592	0002120736	S	121	ATCTTGCTTCCGGTTTCCGAGGGGGTTGGATTGTGTTCTCAGCCCTACGC	10	+	45142485-45142534	10q22	PREDICTED: Rattus norvegicus RGD1561277 (predicted) (RGD1561277_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11067374-S	ILMN_297056	SYT7	NM_021659.1	NM_021659.1		59267	11067374	NM_021659.1	Syt7	NP_067691.1	ILMN_2039207	0007400386	S	1296	GCGAGGTGAAGCACTGGAAAGACATGATCGCTCGTCCCCGGCAGCCTGTG	1	+	212935229-212935278	1q43	Rattus norvegicus synaptotagmin VII (Syt7), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress [goid 1778] [evidence IEA]; The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress [goid 1778] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644391-S	ILMN_271685	DKK4_PREDICTED	XM_001077211.1	XM_001077211.1		295445	109467647	XM_001077211.1	Dkk4_predicted	XP_001077211.1	ILMN_1363501	0003520242	S	1101	GGGGAAGAATGAGGAATGTGGTAAGAATGTGGAGCAGAAGAGGGCAGGAC				2q43	PREDICTED: Rattus norvegicus dickkopf homolog 4 (Xenopus laevis) (predicted) (Dkk4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42475955-S	ILMN_301612	ARPC1B	NM_019289.2	NM_019289.2		54227	42475955	NM_019289.2	Arpc1b	NP_062162.1	ILMN_1369239	0002850440	S	1242	GGAGGAGGGAAAGGGGTTGGGGAGGCTAAGGGCTGCTTTGCTGAATGCTT	12	-	9796405-9796454	12p11	Rattus norvegicus actin related protein 2/3 complex, subunit 1B (Arpc1b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_60223048-S	ILMN_273174	CLEC11A	NM_001012459.1	NM_001012459.1		29313	60223048	NM_001012459.1	Clec11a	NP_001012477.1	ILMN_1374221	0005860056	S	1546	CTGGGAGAAAGGGGAAGTGGACTGCTAGTGTACAGCCTGCACAAGCTAGG	1	-	94785510-94785559	1q22	Rattus norvegicus C-type lectin domain family 11, member a (Clec11a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence NAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]	Scgf	Scgf
Rattus norvegicus	RefSeq	GI_62645743-S	ILMN_279424	RGD1562221_PREDICTED	XM_001079845.1	XM_001079845.1		295980	109470447	XM_001079845.1	RGD1562221_predicted	XP_001079845.1	ILMN_1373518	0002680113	S	2578	TGGGCTTACCAGAATGGAGGCAGACCCGAGGATGGCACGTATGTCTGTGC				3q33	PREDICTED: Rattus norvegicus similar to FLJ46154 protein (predicted) (RGD1562221_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28849912-S	ILMN_58783	UGT1A1	NM_012683.2	NM_012683.2		24861	89276773	NM_012683.2	Ugt1a1	NP_036815.1	ILMN_1350470	0001450450	S	690	GCAGAGTGGTTTACTCCCCCTATGGGTCACTTGCCACTGAAATCTTACAG	9	+	87091930-87091979	9q35	Rattus norvegicus UDP glucuronosyltransferase 1 family, polypeptide A1 (Ugt1a1), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]	 [goid 6789] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; The chemical reactions and pathways involving biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs) [goid 18879] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]	Ugt1; Udpgt	Ugt1; Udpgt
Rattus norvegicus	RefSeq	GI_62654723	ILMN_267934	DSM-1	NM_001037215.2	NM_001037215.2		501103	84992996	NM_001037215.2	Dsm-1	NP_001032292.1	ILMN_1650976	0006650593	S	1653	CTAGGGGCTAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGACTCCCC	9	-	11039204-11039253	9q12	Rattus norvegicus D-serine modulator-1 (Dsm-1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; The directed movement of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride synthesized from adenosine 5'-phosphosulfate, into, out of, within or between cells [goid 46963] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Catalysis of the transfer of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride synthesized from adenosine 5'-phosphosulfatefrom one side of a membrane to the other [goid 46964] [evidence IEA]	MGC124695	MGC124695
Rattus norvegicus	RefSeq	GI_34855301-S	ILMN_60414	SNRPD2_PREDICTED	XM_214847.2	XM_214847.2		292688	34855301	XM_214847.2	Snrpd2_predicted	XP_214847.1	ILMN_1352362	0000360497	S	11	GTGCTCCAAAGGCTAAAGCAACGCGCTTGGAGGCGGGAGTGATCTGCTAG					PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein D2 (predicted) (Snrpd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34852648-S	ILMN_270868	TYSND1_PREDICTED	XM_001056113.1	XM_001056113.1		365571	109510100	XM_001056113.1	Tysnd1_predicted	XP_001056113.1	ILMN_1349751	0001690148	S	1419	CATCCTGTCGGCCGTGGTGCATGTGGATGATGCCCCAGTGATGCTACAGA				20q11	PREDICTED: Rattus norvegicus trypsin domain containing 1 (predicted) (Tysnd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659095-S	ILMN_66057	LOC498197	XM_573415.1	XM_573415.1		498197	62659095	XM_573415.1	LOC498197	XP_573415.1	ILMN_1357289	0003130333	S	1809	GGCCTAAGACAGGAGGGCCGCCATAAGCTGCTGCCATATCCAATGACGGG					PREDICTED: Rattus norvegicus similar to envelope glycoprotein (LOC498197), mRNA.					
Rattus norvegicus	RefSeq	GI_62663220-S	ILMN_277073	LOC498705	XM_001069765.1	XM_001069765.1		498705	109505472	XM_001069765.1	LOC498705	XP_001069765.1	ILMN_1349265	0002900138	S	597	CCAGGTTCACTTTCTGGCGGGGGAAGCATCTCAGGATTCCATTGCCGGGA				17p14	PREDICTED: Rattus norvegicus hypothetical protein LOC498705 (LOC498705), mRNA.					
Rattus norvegicus	RefSeq	GI_40254736-S	ILMN_295573	PPP4R1	NM_080907.2	NM_080907.2		140943	40254736	NM_080907.2	Ppp4r1	NP_543183.1	ILMN_1369824	0006100079	S	3548	TGCAGACTCTCTCCCGACTCTTTTCATGCTGGTCATGACGTGAAGGGGAC	9	+	104611524-104611573	9q37	Rattus norvegicus protein phosphatase 4, regulatory subunit 1 (Ppp4r1), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Pp4r1	Pp4r1
Rattus norvegicus	RefSeq	GI_62660844-S	ILMN_58329	LOC498422	XM_573671.1	XM_573671.1		498422	62660844	XM_573671.1	LOC498422	XP_573671.1	ILMN_1355903	0002570164	S	693	ATCTTCATGTCCTTAACCCTGGGGACGGGCATCTACTCCTTGTCTTCAGG					PREDICTED: Rattus norvegicus similar to LOC400794 protein (LOC498422), mRNA.					
Rattus norvegicus	RefSeq	GI_47577170-S	ILMN_276187	OLR344	NM_001001043.1	NM_001001043.1		405929	47577170	NM_001001043.1	Olr344	NP_001001043.1	ILMN_1349710	0000520121	S	316	GCCAGTGTTGACTGTTTCCTACTTGCTGTCATGGCTTTTGACAGGCATGC	1	+	216070983-216071032	1q43	Rattus norvegicus olfactory receptor 344 (Olr344), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr344	Olr344
Rattus norvegicus	RefSeq	GI_62651148-S	ILMN_49355	LOC500706	XM_580107.1	XM_580107.1		500706	62651148	XM_580107.1	LOC500706	XP_580107.1	ILMN_1359004	0005910497	S	393	CCTGGCTCATTCCCATGTCTGGCCAATAGGAGGAGAGTGGGATCTCAAGG					PREDICTED: Rattus norvegicus LOC500706 (LOC500706), mRNA.					
Rattus norvegicus	RefSeq	GI_62650129-S	ILMN_64719	LOC366506	XM_578511.1	XM_578511.1		366506	62650129	XM_578511.1	LOC366506	XP_578511.1	ILMN_1357514	0005860288	S	47	GCACAGAAATGGCATCCAGAAACCCTGGAACATGTGCTTTGCCAAGAAGC					PREDICTED: Rattus norvegicus similar to OTTMUSP00000000438 (LOC366506), mRNA.					
Rattus norvegicus	RefSeq	GI_47577234-S	ILMN_267387	OLR379	NM_001000261.1	NM_001000261.1		293812	47577234	NM_001000261.1	Olr379	NP_001000261.1	ILMN_1364212	0006110600	S	427	AGTTTTGTGGCTGGGGCTTACATTGCTGGCCTCCTCAGTGCCTTGGTGAG	1	-	216923935-216923984	1q43	Rattus norvegicus olfactory receptor 379 (Olr379), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr379; ratchr1-217085607-217084672_ORF	Olr379; ratchr1-217085607-217084672_ORF
Rattus norvegicus	RefSeq	GI_62078896-S	ILMN_298153	NCLN	NM_001014082.1	NM_001014082.1		314648	62078896	NM_001014082.1	Ncln	NP_001014104.1	ILMN_1371107	0001500400	S	2820	GATTGGCCCCTTGGGGTGGCCGTGGGTCTGCAGTTGGTGGGTTACAAAAT	7	+	9705918-9705967	7q11	Rattus norvegicus nicalin homolog (zebrafish) (Ncln), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1309355	RGD1309355
Rattus norvegicus	RefSeq	GI_47577926-S	ILMN_288763	OLR1137	NM_001001079.1	NM_001001079.1		405969	47577926	NM_001001079.1	Olr1137	NP_001001079.1	ILMN_1359157	0003840519	S	803	CGAGATATTCAGCAGTGGCATCTGTGATGTACACTGTAGTCCCTCAGATG	8	-	17279673-17279722	8q13	Rattus norvegicus olfactory receptor 1137 (Olr1137), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1137	Olr1137
Rattus norvegicus	RefSeq	GI_9507046-S	ILMN_288355	RGS7	NM_019343.1	NM_019343.1		54296	9507046	NM_019343.1	Rgs7	NP_062216.1	ILMN_1367303	0000050519	S	1997	GGAAGGTGTCATTTCACCCGTGTATCCACAGTCTTAAGCAAGCGCCCATC	13	-	90732600-90732649	13q24-q25	Rattus norvegicus regulator of G-protein signaling 7 (Rgs7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656588-I	ILMN_281084	LOC685246	XM_001062997.1	XM_001062997.1		685246	109488584	XM_001062997.1	LOC685246	XP_001062997.1	ILMN_1376135	0004730270	S	447	CCGGGTTATCGTAGGAGCTATCCGACCCCGTGTCATTGTAGGGTCCGCGA	10	+	64446844-64446893	10q25	PREDICTED: Rattus norvegicus hypothetical protein LOC685246 (LOC685246), mRNA.					
Rattus norvegicus	RefSeq	GI_62666623-S	ILMN_262426	RGD1566093_PREDICTED	XM_001060226.1	XM_001060226.1		501526	109511561	XM_001060226.1	RGD1566093_predicted	XP_001060226.1	ILMN_1365821	0005700372	S	1616	CCAATTTAGCCTGGCTCCTGAAGTTCTGGAACAGCTCTTCCTGTACCCAA				Xq13	PREDICTED: Rattus norvegicus similar to Fusion (involved in t(12;16) in malignant liposarcoma) (predicted) (predicted) (RGD1566093_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642182-S	ILMN_52693	LIPL2_PREDICTED	XM_220067.3	XM_220067.3		294094	62642182	XM_220067.3	Lipl2_predicted	XP_220067.3	ILMN_1368254	0001190164	S	1753	GGATTGCAACCTGTGAAACCCAGGGCAGAGTCCTCCATGTATAACATGCC				1q52	PREDICTED: Rattus norvegicus lipase-like, ab-hydrolase domain containing 2 (predicted) (Lipl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657659-S	ILMN_61358	LOC363747	XM_573263.1	XM_573263.1		363747	62657659	XM_573263.1	LOC363747	XP_573263.1	ILMN_1353702	0006450181	S	631	CTGGCAACCGATTCCTGCACTTTGCACCTCCCGACTTTCTTTTGAGGGTG					PREDICTED: Rattus norvegicus similar to TruB pseudouridine (psi) synthase homolog 2 (LOC363747), mRNA.					
Rattus norvegicus	RefSeq	GI_62653379-S	ILMN_49781	LOC315510	XM_235959.3	XM_235959.3		315510	62653379	XM_235959.3	LOC315510	XP_235959.3	ILMN_1358179	0001780019	S	4328	GGGGCTTCGGCAGGGCCATTGCTTCCAAAAGAGGGGATCCAAAACATATC				8q13	PREDICTED: Rattus norvegicus similar to immunoglobulin superfamily, member 9 (LOC315510), mRNA.					
Rattus norvegicus	RefSeq	GI_37059753-S	ILMN_296838	OPTN	NM_145081.3	NM_145081.3		246294	37059753	NM_145081.3	Optn	NP_659549.2	ILMN_1364655	0004540736	S	3446	GGAGAGAGATCAGTGACAGCATCTTCCACAGCAGCTAGGATACAGGGCAG	17	+	84348202-84348251	17q12.3	Rattus norvegicus optineurin (Optn), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [pmid 15837803] [evidence IDA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [pmid 15837803] [evidence IDA]	The process of directing proteins towards the Golgi using signals contained within the protein [goid 42] [evidence IEA]; The process of directing proteins towards the Golgi using signals contained within the protein [goid 42] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence ISS]; The directed movement of proteins from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane [goid 43001] [evidence IEA]; The directed movement of proteins from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane [goid 43001] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [pmid 15837803] [evidence IMP]	Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Fip2	Fip2
Rattus norvegicus	RefSeq	GI_62646082-S	ILMN_294683	PLAGL2_PREDICTED	XM_001061140.1	XM_001061140.1		296281	109471057	XM_001061140.1	Plagl2_predicted	XP_001061140.1	ILMN_1369580	0000520215	S	1514	TACTGGGCTTTCTTCCGCTCAACCTACCCCCATGTAACCCACCAGGGGCC				3q41	PREDICTED: Rattus norvegicus pleiomorphic adenoma gene-like 2 (predicted) (Plagl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659758-S	ILMN_302745	CCDC19	NM_001024882.1	NM_001024882.1		304984	67846041	NM_001024882.1	Ccdc19	NP_001020053.1	ILMN_1363351	0006180025	S	1396	GCAGATTGAGAAGGAGAAGCGGGAACAGGAGAAAAAGGCTGCGGGGTGCC	13	+	88550396-88550445	13q24	Rattus norvegicus coiled-coil domain containing 19 (Ccdc19), mRNA.				MGC116217	MGC116217
Rattus norvegicus	RefSeq	GI_8393152-S	ILMN_295234	PDLIM1	NM_017365.1	NM_017365.1		54133	8393152	NM_017365.1	Pdlim1	NP_059061.1	ILMN_1361838	0001940070	S	964	GGGGATCAGATTTATTGTGAAAAGCATGCCCGGGAGAGGGTCACACCACC	1	-	245350463-245350512	1q53	Rattus norvegicus PDZ and LIM domain 1 (elfin) (Pdlim1), mRNA.	Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	CLP36	CLP36
Rattus norvegicus	RefSeq	GI_16758439-S	ILMN_281768	EGR2	NM_053633.1	NM_053633.1		114090	16758439	NM_053633.1	Egr2	NP_446085.1	ILMN_1370369	0006380465	S	2594	GCAAGTGTCCTCTGTGCCTTGTGTGATGTGGGCAGTGTTACAGGGTCTGC	20	-	21884204-21884253	20p11	Rattus norvegicus early growth response 2 (Egr2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEP]; The specific actions or reactions of an organism that recur with measured regularity [goid 7622] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14037] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 3 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21569] [evidence ISS]; The process that contributes to the act of creating the structural organization of the facial nerve. This process pertains to the physical shaping of a rudimentary structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities [goid 21612] [evidence ISS]; The process that gives rise to rhombomere 3. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21660] [evidence ISS]; The process that gives rise to rhombomere 5. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21666] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IMP]; Division of the brain into a series of semi-repetitive parts or segments [goid 35284] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Krox20	Krox20
Rattus norvegicus	RefSeq	GI_62642142-S	ILMN_50879	RGD1306839_PREDICTED	XM_215236.3	XM_215236.3		293888	109459995	XM_215236.3	RGD1306839_predicted	XP_215236.3	ILMN_1355223	0007050538	S	339	GTTCCCCTAAGTTTCATCTTCACCTACCAGTATGACCTGGGCTACGGAAC	1	-	233032341-233032390	1q52	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5033414D02 (predicted) (RGD1306839_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658259-S	ILMN_58603	LOC501786	XM_577194.1	XM_577194.1		501786	62658259	XM_577194.1	LOC501786	XP_577194.1	ILMN_1363714	0000070497	S	853	GTGTTGTCTTTGGGGATAGCCCAGTAATTCGCCTTCTTGGCCCACAGGGG					PREDICTED: Rattus norvegicus similar to CG13990-PA (LOC501786), mRNA.					
Rattus norvegicus	RefSeq	GI_62657095-S	ILMN_65172	MPP3	XM_340911.3	XM_340911.3		114202	109489069	XM_340911.3	Mpp3	XP_340912.2	ILMN_1350187	0001190348	S	1887	CTGAGGACCCAGCAACTCCACTTGATGAACAGCAGCAAGAGATGGCCGCC	10	-	91057959-91057986:91059348-91059369	10q32.1	PREDICTED: Rattus norvegicus membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) (Mpp3), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_47577356-S	ILMN_296541	OLR709	NM_001001066.1	NM_001001066.1		405954	47577356	NM_001001066.1	Olr709	NP_001001066.1	ILMN_1351735	0006110095	S	320	GTACTGAGATTGTCATTCTGGTGGCAATGGCCTACGATCGCTATGTGGCA	3	-	74035108-74035157	3q24	Rattus norvegicus olfactory receptor 709 (Olr709), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr709	Olr709
Rattus norvegicus	RefSeq	GI_62646291	ILMN_54434	WFDC12	XM_579258.1	XM_579258.1		408227	62646291	XM_579258.1	Wfdc12	XP_579258.1	ILMN_1649719	0002690524	S	50	CTCTGGTAACTGGAGGTGGAGTCAAAGGCGCTGAAAATGGAGTTTGCCCG				3q42	PREDICTED: Rattus norvegicus WAP four-disulfide core domain 12 (Wfdc12), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_61557231-S	ILMN_302858	PQLC1	NM_001013189.1	NM_001013189.1		361352	61557231	NM_001013189.1	Pqlc1	NP_001013207.1	ILMN_1367288	0004760082	S	1526	CCTGCACACGATGATGCCATCTACTTAGCACAACAGCTCTGATGGTCACG	18	+	77187344-77187393	18q12.3	Rattus norvegicus PQ loop repeat containing 1 (Pqlc1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_39930538-S	ILMN_269604	MYOCD	NM_182667.1	NM_182667.1		246297	39930538	NM_182667.1	Myocd	NP_872608.1	ILMN_1361164	0003520435	S	4655	AGGGCACTGGGGACTGAGGAAGACAACACAGATTGCCCGAGTCTCTCAGA	10	-	51496470-51496519	10q24	Rattus norvegicus transcription factor myocardin (Myocd), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IMP]; Any process that modulates the frequency, rate or extent of smooth muscle cell differentiation [goid 51150] [evidence IMP]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	Mycd	Mycd
Rattus norvegicus	RefSeq	GI_62663425-S	ILMN_53870	TXNDC5_PREDICTED	XM_225257.3	XM_225257.3		306869	62663425	XM_225257.3	Txndc5_predicted	XP_225257.2	ILMN_1370755	0005910278	S	2351	GGCAAGGAGGCTCGAAACAAGACTACGTCTGCTTCCTAAGCATCAGGCGC					PREDICTED: Rattus norvegicus thioredoxin domain containing 5 (predicted) (Txndc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576452	ILMN_277337	OLR1593	NM_001000085.1	NM_001000085.1		289255	47576452	NM_001000085.1	Olr1593	NP_001000085.1	ILMN_1650387	0003130180	S	570	GGACACCTCCATGATTCTGGTTGAGGATGTGGTGCATGCCGTGGCCATCA	13	+	89913233-89913282	13q24	Rattus norvegicus olfactory receptor 1593 (Olr1593), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr13-90101548-90102495_ORF; Olr1593	ratchr13-90101548-90102495_ORF; Olr1593
Rattus norvegicus	RefSeq	GI_62659204-S	ILMN_51948	MYL6_PREDICTED	XM_343144.3	XM_343144.3		362816	109497766	XM_343144.3	Myl6_predicted	XP_343145.2	ILMN_1350588	0001450592	S	394	CACTGTGTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTAGTGGCGGGG	13	+	29671796-29671845	13p11	PREDICTED: Rattus norvegicus myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) (Myl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652885-S	ILMN_275557	TRMU_PREDICTED	XM_001078327.1	XM_001078327.1		362976	109482613	XM_001078327.1	Trmu_predicted	XP_001078327.1	ILMN_1368709	0004230446	S	1208	GTGGGAAAATCCTGCGGTTAGGGCCATCTGCCTACACACTCCAGAAGGGC				7q34	PREDICTED: Rattus norvegicus tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (predicted) (Trmu_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342198-S	ILMN_59587	CD6	NM_175577.3	NM_175577.3		25752	77539058	NM_175577.3	Cd6	NP_783167.2	ILMN_2040828	0000290246	S	2698	AGTTGGGACAAGAATGCAGGGATCTGTCCTGGAGGGCTAGAGGGCACGGA	1	-	213291013-213291062	1q43	Rattus norvegicus Cd6 molecule (Cd6), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IPI]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IPI]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IPI]	Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]	MGC108551; OX52	MGC108551; OX52
Rattus norvegicus	RefSeq	GI_62665353-S	ILMN_67619	LOC498958	XM_579893.1	XM_579893.1		498958	62665353	XM_579893.1	LOC498958	XP_579893.1	ILMN_1354365	0002360133	S	2021	TGCTATTACTGGGACTCTGCAAGCCCCGGCTGCACCATAGTAACGAGAGC				19q12	PREDICTED: Rattus norvegicus LOC498958 (LOC498958), mRNA.					
Rattus norvegicus	RefSeq	GI_62649270-S	ILMN_269549	RGD1565362_PREDICTED	XM_001055452.1	XM_001055452.1		313382	109476773	XM_001055452.1	RGD1565362_predicted	XP_001055452.1	ILMN_1363174	0004920131	S	3691	AGCTAAGAGGCACGGAACAGCTCCACCGCCAATGAAACTGCCCCCACCTT				5q33	PREDICTED: Rattus norvegicus similar to channel-interacting PDZ domain protein isoform 1 (predicted), transcript variant 2 (RGD1565362_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650071-S	ILMN_61969	LOC362665	XM_342982.2	XM_342982.2		362665	62650071	XM_342982.2	LOC362665	XP_342983.2	ILMN_1361124	0002230035	S	678	CCCAAAGAGAGGCACCGCTGGAACACTAACGAGAGATCATGATGCAGCCG					PREDICTED: Rattus norvegicus similar to KIAA0833 protein (LOC362665), mRNA.					
Rattus norvegicus	RefSeq	GI_13540692-A	ILMN_278369	MYOC	NM_030865.1	NM_030865.1		81523	13540692	NM_030865.1	Myoc	NP_110492.1	ILMN_1376768	0001450253	S	1930	GGGGTGACCACCACTCCTGTGGTTAGAACTGCTCCTGCAGTATTTACTCC	13	+	78314106-78314155	13q22	Rattus norvegicus myocilin (Myoc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Tigr	Tigr
Rattus norvegicus	RefSeq	GI_56799433-S	ILMN_281782	GPR85	NM_022254.3	NM_022254.3		64020	56799433	NM_022254.3	Gpr85	NP_071590.1	ILMN_1371834	0000460687	S	2461	TGTAAGTCAGCTGTCAGGGGAGCCCACAGCCTTAGTGTGACATCTGGCAC	4	-	39296261-39296310	4q21	Rattus norvegicus G protein-coupled receptor 85 (Gpr85), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC105281; Srep2	MGC105281; Srep2
Rattus norvegicus	RefSeq	GI_51948439-S	ILMN_278442	MRPL37	NM_001004235.1	NM_001004235.1		56281	51948439	NM_001004235.1	Mrpl37	NP_001004235.1	ILMN_1369643	0004730500	S	1306	CTTGCATGGTGCTGTGTGAACCAGGAACCTTCTGGGGCCTGATGCCTCTG	5	-	128135514-128135545:128135546-128135563	5q34	Rattus norvegicus mitochondrial ribosomal protein L37 (Mrpl37), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]			MGC94649; Rpml2	MGC94649; Rpml2
Rattus norvegicus	RefSeq	GI_62642411	ILMN_63108	LOC499365	XM_579952.1	XM_579952.1		499365	62642411	XM_579952.1	LOC499365	XP_579952.1	ILMN_1650511	0005080706	S	1283	TCTGTCTGGGCCTCGTGTTGTCATCTTTCCCCGTAGGGACTGTGTGTACG					PREDICTED: Rattus norvegicus LOC499365 (LOC499365), mRNA.					
Rattus norvegicus	RefSeq	GI_62650940-S	ILMN_62146	LOC302113	XM_229684.3	XM_229684.3		302113	62650940	XM_229684.3	LOC302113	XP_229684.3	ILMN_1348793	0005270372	S	331	GCCACTGAGGAAGAGGAGGAGAGCAGGAACACCACCACACTAGAGCAGGA				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC302113), mRNA.					
Rattus norvegicus	RefSeq	GI_29789248-S	ILMN_266114	PER3	NM_023978.1	NM_023978.1		78962	29789248	NM_023978.1	Per3	NP_076468.1	ILMN_1371382	0005570082	S	3091	ATGACATACCAGGTGCCGGAGAGGGGTAGAGACACCGTGCTGAGGGAAGA	5	-	168155409-168155436:168156060-168156081	5q36	Rattus norvegicus period homolog 3 (Drosophila) (Per3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	period3; rper3	period3; rper3
Rattus norvegicus	RefSeq	GI_34876461-S	ILMN_49804	LYZL1_PREDICTED	XM_344612.2	XM_344612.2		364745	109505052	XM_344612.2	Lyzl1_predicted	XP_344613.2	ILMN_1359393	0005860411	S	195	CCGGCCTGGACAATTACGGGGGATTTACCCTTGGAAACTGGCTCTGCATG	17	-	62069386-62069397:62069895-62069932	17q12.1	PREDICTED: Rattus norvegicus lysozyme-like 1 (predicted) (Lyzl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_22507309	ILMN_54067	OSTF1	NM_148892.2	NM_148892.2		259275	61889109	NM_148892.2	Ostf1	NP_683690.2	ILMN_1650896	0001980435	S	521	ATGTGGAACTGAACCAGCAGAACAAGCTGGGAGACACGGCTCTGCACGCA	1	-	222187178-222187208:222189942-222189960	1q43	Rattus norvegicus osteoclast stimulating factor 1 (Ostf1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Sh3d3	Sh3d3
Rattus norvegicus	RefSeq	GI_62642703-S	ILMN_57108	LOC310988	XM_227832.3	XM_227832.3		310988	62642703	XM_227832.3	LOC310988	XP_227832.3	ILMN_1371941	0000840465	S	954	TTTTCTATAAGGTCAATGGAGCCCCCATCTGAGAAGCTCTGGGAGCGGGA				2q11	PREDICTED: Rattus norvegicus similar to Psmc6 protein (LOC310988), mRNA.					
Rattus norvegicus	RefSeq	GI_62664284-S	ILMN_289812	CENTD3_PREDICTED	XM_001066167.1	XM_001066167.1		361314	109507227	XM_001066167.1	Centd3_predicted	XP_001066167.1	ILMN_1351443	0004850497	S	4839	CAGCCTTCCAACACAGACACCCAGCTTACCCACCCAAATCCCCTGCGCTT				18p11	PREDICTED: Rattus norvegicus centaurin, delta 3 (predicted) (Centd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663890-S	ILMN_266683	RGD1560691_PREDICTED	XM_001066143.1	XM_001066143.1		307124	109506077	XM_001066143.1	RGD1560691_predicted	XP_001066143.1	ILMN_1349171	0003710008	S	1563	CCAACTCCACCACTTCCGCTCTCTCAGTGTAGGCAGCCGTCTAGGGTGTA				17q12.3	PREDICTED: Rattus norvegicus similar to calcium/calmodulin-dependent protein kinase 1D (predicted), transcript variant 4 (RGD1560691_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638560-S	ILMN_55735	LOC499024	XM_579901.1	XM_579901.1		499024	62638560	XM_579901.1	LOC499024	XP_579901.1	ILMN_1364418	0004120242	S	380	ACTCCTCTGTCCAAGGAACTGCACAGTCCACACAACACTATGATTGCAGG					PREDICTED: Rattus norvegicus LOC499024 (LOC499024), mRNA.					
Rattus norvegicus	RefSeq	GI_8393585-S	ILMN_262936	HTR2B	NM_017250.1	NM_017250.1		29581	8393585	NM_017250.1	Htr2b	NP_058946.1	ILMN_1350766	0000670647	S	1530	GGATCAACCCTGCCATGTACCAGAGCCCAGTAAGGCTCCGAAGTTCAACC	9	-	84840443-84840492	9q35	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 2B (Htr2b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646657-S	ILMN_276010	RGD1560934_PREDICTED	XM_001061365.1	XM_001061365.1		499974	109472953	XM_001061365.1	RGD1560934_predicted	XP_001061365.1	ILMN_1373608	0005050440	S	1055	CCCCTGCCTTTGGAAGTTCTGTGGCTGCTTTCGGCAGTCCTAGCCCACAT				4q11	PREDICTED: Rattus norvegicus similar to nucleoporin like 2 (predicted) (RGD1560934_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658636-S	ILMN_289791	KIAA0415	NM_001037220.1	NM_001037220.1		641386	83281203	NM_001037220.1	Kiaa0415	NP_001032297.1	ILMN_1369742	0001770746	S	2194	CCTGATCCCAAGGGTGTCACTGTTCCTGTCAAAAATGCGGACCCTGGCCC	12	-	12492392-12492430:12492544-12492554	12p11	Rattus norvegicus KIAA0415 protein (Kiaa0415), mRNA.					
Rattus norvegicus	RefSeq	GI_62643565-S	ILMN_272939	RGD1563620_PREDICTED	XM_001062166.1	XM_001062166.1		310511	109466757	XM_001062166.1	RGD1563620_predicted	XP_001062166.1	ILMN_1374876	0007000446	S	1300	ATGATGAAGACCCTGAAGGAAGTGTGGATCCAGAAGGACAAGGATCCTAG				2q32	PREDICTED: Rattus norvegicus similar to retinoblastoma binding protein 4 (predicted) (RGD1563620_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666092-S	ILMN_57884	LOC502430	XM_577912.1	XM_577912.1		502430	62666092	XM_577912.1	LOC502430	XP_577912.1	ILMN_1356933	0006350537	S	528	ATCGGAGGCCGGCATTCCAGGCGCGACAAGTCGAACTCCGACGCTGGGAT					PREDICTED: Rattus norvegicus similar to small androgen receptor-interacting protein (LOC502430), mRNA.					
Rattus norvegicus	RefSeq	GI_62657509-S	ILMN_69092	TBCD_PREDICTED	XM_340955.2	XM_340955.2		360683	62657509	XM_340955.2	Tbcd_predicted	XP_340956.2	ILMN_1355350	0003360133	S	1334	GCTGCCTCCTGACACATCAAGTCGCATGTTCTCATCCGCAGCCAACACTG				10q32.3	PREDICTED: Rattus norvegicus tubulin-specific chaperone d (predicted) (Tbcd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653112-S	ILMN_57853	LOC366994	XM_345879.2	XM_345879.2		366994	62653112	XM_345879.2	LOC366994	XP_345880.2	ILMN_1360955	0000360358	S	1437	GTGCTGGTCTGGCCGTTCCTGTTACTGTAGTCCCTCAGTGTTCCACAGCC					PREDICTED: Rattus norvegicus hypothetical LOC366994 (LOC366994), mRNA.					
Rattus norvegicus	RefSeq	GI_62638965-S	ILMN_270447	RGD1565464_PREDICTED	XM_001058365.1	XM_001058365.1		292414	109460902	XM_001058365.1	RGD1565464_predicted	XP_001058365.1	ILMN_1372056	0001400750	S	2104	CTTGCTTTCCACGCTGTACTGGGATACCTCTGTCTCTTGGCCCTGGGAAG				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1565464_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506482-S	ILMN_301742	CHAD	NM_019164.1	NM_019164.1		29195	9506482	NM_019164.1	Chad	NP_062037.1	ILMN_1360446	0006400465	S	1494	CAAGCCCTTGACCCACCCTGATTGCCAGAAAAAATTTCAGCTCATGCCCC	10	+	83205582-83205631	10q31	Rattus norvegicus chondroadherin (Chad), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090549-S	ILMN_284840	GSTO1	NM_001007602.1	NM_001007602.1		114846	56090549	NM_001007602.1	Gsto1	NP_001007603.1	ILMN_1349038	0001570487	S	760	AAGTCTCTACCTACAGGACAGCCCCGAGGCCTGTGATTATGGGCTCTGAG	1	+	253238413-253238461:253238462-253238462	1q54	Rattus norvegicus glutathione S-transferase omega 1 (Gsto1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence NAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence NAS]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 2 glutathione + dehydroascorbate = glutathione disulfide + ascorbate [goid 45174] [evidence NAS]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94845	MGC94845
Rattus norvegicus	RefSeq	GI_62651521-S	ILMN_68129	LOC366756	XM_345743.2	XM_345743.2		366756	62651521	XM_345743.2	LOC366756	XP_345744.2	ILMN_1365833	0002510438	S	76	CTGGGGCTGAGCTTGTGAGACCTGGGACCTCTGTGAAGTTATCTTGCAAA					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain (LOC366756), mRNA.					
Rattus norvegicus	RefSeq	GI_47576278-S	ILMN_284911	OLR1292	NM_001000960.1	NM_001000960.1		405312	47576278	NM_001000960.1	Olr1292	NP_001000960.1	ILMN_1355556	0001770066	S	286	ACCTACCCTGGTTGCATGACTCAGCTCTACTTTTTCACCACTTTTGGAAC	8	-	41628485-41628534	8q22	Rattus norvegicus olfactory receptor 1292 (Olr1292), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1292	Olr1292
Rattus norvegicus	RefSeq	GI_62664714-S	ILMN_57250	RGD1566269_PREDICTED	XM_225661.4	XM_225661.4		307206	109506862	XM_225661.4	RGD1566269_predicted	XP_225661.3	ILMN_1374428	0004200176	S	4381	GGAGTACCCTGGGCCGACCTTTAATCCCAGCTATCTGAAGACACAGAAAG	18	+	83108411-83108460	18q13	PREDICTED: Rattus norvegicus similar to Neuropilin- and tolloid-like protein 1 (predicted) (RGD1566269_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650994-A	ILMN_285097	GALC	NM_001005888.1	NM_001005888.1		314360	54312097	NM_001005888.1	Galc	NP_001005888.1	ILMN_1376938	0005670563	S	1909	TCTCGCCTCTGGTATGTTGAACGGCAAGATCCTGTGGGAAAATGTGCCCG	6	-	122355754-122355803	6q32	Rattus norvegicus galactosylceramidase (Galc), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group [goid 6683] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: D-galactosyl-N-acylsphingosine + H2O = D-galactose + N-acylsphingosine [goid 4336] [evidence IEA]; Catalysis of the reaction: D-galactosyl-N-acylsphingosine + H2O = D-galactose + N-acylsphingosine [goid 4336] [evidence ISS]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659881	ILMN_53499	TRP53BP2_PREDICTED	XM_223012.3	XM_223012.3		305025	62659881	XM_223012.3	Trp53bp2_predicted	XP_223012.3	ILMN_1650710	0002690537	S	2958	TCCTTGGGTGTGTGGAGGAAGGAGAGAAGTCGCGTAGGTGGTGGATTGCG				13q26	PREDICTED: Rattus norvegicus transformation related protein 53 binding protein 2 (predicted) (Trp53bp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662880	ILMN_52912	DEFCR4_PREDICTED	XM_214386.2	XM_214386.2		290856	62662880	XM_214386.2	Defcr4_predicted	XP_214386.1	ILMN_1650746	0006770332	S	220	ATTGGGGAGAAGGCATTATGGGGATCTGCAACAAGAGATACGGAAGCCTC				16q12.5	PREDICTED: Rattus norvegicus defensin related cryptdin 4 (predicted) (Defcr4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666645-S	ILMN_64932	LOC367747	XM_346277.2	XM_346277.2		367747	62666645	XM_346277.2	LOC367747	XP_346278.2	ILMN_1364707	0003390500	S	1866	GCCAAGGACAAGGACAGAGACACAGAGTTTTGTCACAGGGTGTGTGATGT				Xq13	PREDICTED: Rattus norvegicus similar to nudix (nucleoside diphosphate linked moiety X)-type motif 11 (LOC367747), mRNA.					
Rattus norvegicus	RefSeq	GI_62661607-S	ILMN_51662	RGD1563689_PREDICTED	XM_573801.2	XM_573801.2		498530	109501795	XM_573801.2	RGD1563689_predicted	XP_573801.2	ILMN_1354226	0002060601	S	1608	GTGTGTGTCCTAGGCAGAGATTGAGGACGGCCCGTTTGCTCTCTCTTCAC	15	+	42042432-42042444:42042445-42042481	15p12	PREDICTED: Rattus norvegicus similar to KIAA0853 protein (predicted) (RGD1563689_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649768-S	ILMN_69255	ZDHHC18_PREDICTED	XM_342931.2	XM_342931.2		362613	62649768	XM_342931.2	Zdhhc18_predicted	XP_342932.2	ILMN_1355425	0001850450	S	1092	AAGCCAGACGCCAGCATGGTAGGAGGCCACCCCTAAATGTGACTGAGTGC				5q36	PREDICTED: Rattus norvegicus zinc finger, DHHC domain containing 18 (predicted) (Zdhhc18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865823	ILMN_269848	MAPKAPK3	NM_001012127.1	NM_001012127.1		315994	58865823	NM_001012127.1	Mapkapk3	NP_001012127.1	ILMN_1530406	0006760064	S	1507	GAGTCATTCTTAAAACAAAAGGAGAATTTTGTTGTCTTAATGTGTCACAT	8	-	112498673-112498722	8q32	Rattus norvegicus mitogen-activated protein kinase-activated protein kinase 3 (Mapkapk3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_22538396-I	ILMN_288838	FXYD2	NM_145717.1	NM_145717.1		29639	22538396	NM_145717.1	Fxyd2	NP_663769.1	ILMN_1375247	0006200403	A	1	CACAGGAAGATCGTGGAGAAGCCCTGGTGGCTGGGGAAATGACAGAGCTG	8	+	48381788-48381825:48381826-48381837	8q22	Rattus norvegicus FXYD domain-containing ion transport regulator 2 (Fxyd2), transcript variant a, mRNA.	Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IMP]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IPI]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	GNAKATP; ATP1C; Atp1g1	GNAKATP; ATP1C; Atp1g1
Rattus norvegicus	RefSeq	GI_62654466-S	ILMN_285568	LOC685004	XM_001061864.1	XM_001061864.1		685004	109484080	XM_001061864.1	LOC685004	XP_001061864.1	ILMN_1352306	0006510369	S	4055	GGGGCCACCGCCACTCCCCTTTACGAGATGAACTCAGACAGAACAAAGCA	8	+	123838043-123838092	8q32	PREDICTED: Rattus norvegicus similar to integrin alpha 9 (LOC685004), mRNA.					
Rattus norvegicus	RefSeq	GI_62667399-S	ILMN_60115	RAB33A_PREDICTED	XM_229145.3	XM_229145.3		317580	109511194	XM_229145.3	Rab33a_predicted	XP_229145.2	ILMN_1360480	0004560347	S	730	CATGTGCCTGGCTTGCCGACTGAAGGCCCAGAAATCCCTCTTGTACCGTG	X	+	134925053-134925102	Xq35	PREDICTED: Rattus norvegicus RAB33A, member of RAS oncogene family (predicted) (Rab33a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665114-S	ILMN_288496	LOC684624	XM_001070778.1	XM_001070778.1		684624	109508613	XM_001070778.1	LOC684624	XP_001070778.1	ILMN_1363427	0003140142	S	277	AAGTACACAGAAGAGGCGGATGTGAAGACGCCAGGAGAGAGGCACTGCTC					PREDICTED: Rattus norvegicus similar to U6 snRNA-associated Sm-like protein LSm6, transcript variant 1 (LOC684624), mRNA.					
Rattus norvegicus	RefSeq	GI_62663255-S	ILMN_48898	LOC502114	XM_577556.1	XM_577556.1		502114	62663255	XM_577556.1	LOC502114	XP_577556.1	ILMN_1358729	0002100452	S	215	TGCGGCAAGTCCCCAACTCCTGAGAAAGCCGCCTCCCAAGTTCTACAGCT					PREDICTED: Rattus norvegicus similar to dimerization cofactor of hepatocyte nuclear factor 1 ( HNF1) from muscle (LOC502114), mRNA.					
Rattus norvegicus	RefSeq	GI_34870025-S	ILMN_60916	LOC363844	XM_344053.1	XM_344053.1		363844	34870025	XM_344053.1	LOC363844	XP_344054.1	ILMN_1350140	0002760731	S	7	CCTGTGAGAGGCAGGTGCTTGGTTCAGGTGGGGACTCTGTCTTCGCATCA					PREDICTED: Rattus norvegicus similar to tubby like protein 4 (LOC363844), mRNA.					
Rattus norvegicus	RefSeq	GI_62655273-S	ILMN_53941	LOC316550	XM_237326.2	XM_237326.2		316550	62655273	XM_237326.2	LOC316550	XP_237326.1	ILMN_1352722	0000380390	S	1634	CTGTTGTTCCAAACTCTGACTGACGGGGAGATGCTATTGCAGTGAGATCG				9q34	PREDICTED: Rattus norvegicus similar to Rab18 (LOC316550), mRNA.					
Rattus norvegicus	RefSeq	GI_47576230-S	ILMN_277026	OLR1323	NM_001000472.1	NM_001000472.1		300624	47576230	NM_001000472.1	Olr1323	NP_001000472.1	ILMN_1362958	0004010086	S	384	CCCCTTGCTTTACAATACTGTAATGTCCTATCAAGTGTGGTCTTGGATGG	8	+	42763792-42763841	8q22	Rattus norvegicus olfactory receptor 1323 (Olr1323), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1323; ratchr8-42772175-42773110_ORF	Olr1323; ratchr8-42772175-42773110_ORF
Rattus norvegicus	RefSeq	GI_62639618-S	ILMN_268257	KLK12_PREDICTED	XM_001080413.1	XM_001080413.1		308564	109461832	XM_001080413.1	Klk12_predicted	XP_001080413.1	ILMN_1367128	0003520050	S	621	AGGGGTTCTTCAAGGTCTGGTTTCCTGGGGATCTGTTGGGCCTTGTGGTC				1q22	PREDICTED: Rattus norvegicus kallikrein 12 (predicted) (Klk12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661936-S	ILMN_267444	RGD1564878_PREDICTED	XM_001058604.1	XM_001058604.1		502002	109502462	XM_001058604.1	RGD1564878_predicted	XP_001058604.1	ILMN_1348899	0007040184	S	360	GAGAACTAAAGCTGTCAGTACCCTCATGTTGCCCCAGAGCGATGCCCAGG				15p12	PREDICTED: Rattus norvegicus similar to natural killer cell protease 7 (predicted) (RGD1564878_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341039-S	ILMN_296861	NAGLT1	NM_176080.2	NM_176080.2		337920	31341039	NM_176080.2	Naglt1	NP_788269.1	ILMN_1363450	0006980072	S	1733	GAAATATTCTGCAGCCAGGGTCTTCTCCAGCTGACAGGGAGCACGCAGTC	20	-	44164398-44164447	20q12	Rattus norvegicus Na+ dependent glucose transporter 1 (Naglt1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	MGC112591	MGC112591
Rattus norvegicus	RefSeq	GI_34855268-S	ILMN_277591	CEACAM11	NM_001025404.1	NM_001025404.1		292668	70912369	NM_001025404.1	Ceacam11	NP_001020575.1	ILMN_1370854	0004280092	S	854	AACCAGTGACCTGGACCTCGAAGAAGCAAAGACGGAAAGGAACCAAGTGC	1	+	77814892-77814941	1q21	Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule 11 (Ceacam11), mRNA.		The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62665165-S	ILMN_263378	RGD1307772	XM_001075785.1	XM_001075785.1		291974	109508795	XM_001075785.1	RGD1307772	XP_001075785.1	ILMN_1375212	0006980435	S	4156	CACTGGGGTTGGTAGAATGCCTGAAATGAAGTGCCTCCCAGCCGGTTCTG				19q11	PREDICTED: Rattus norvegicus similar to mKIAA1930 protein (RGD1307772), mRNA.					
Rattus norvegicus	RefSeq	GI_62639213-S	ILMN_269380	HIPK4	NM_001024776.1	NM_001024776.1		308449	67078469	NM_001024776.1	Hipk4	NP_001019947.1	ILMN_1350466	0000060195	S	1815	GCAGTGGTTGGGAAGAAGGAGAAGGCCACACGACTTCCACAGAGCCGTCT	1	+	82610457-82610506	1q21	Rattus norvegicus homeodomain interacting protein kinase 4 (Hipk4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718267-S	ILMN_279858	LOC689827	XM_001072168.1	XM_001072168.1		689827	109513396	XM_001072168.1	LOC689827	XP_001072168.1	ILMN_1365199	0002970113	S	654	GCTCAGCCAGCTCCTGATGGAGAACACATGTAGGAAGAAGTTGGTCCCCC	Un|NW_047879.1	-	444625-444674		PREDICTED: Rattus norvegicus similar to Myosin-9B (Myosin IXb) (Unconventional myosin-9b) (LOC689827), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639167-S	ILMN_279397	CIC_PREDICTED	XM_001077239.1	XM_001077239.1		308435	109461475	XM_001077239.1	Cic_predicted	XP_001077239.1	ILMN_1367191	0006840044	S	7828	GCAGAATGGCTCCTGTGAGGGCTGCAAGCTGGAGGGTAGTATGAGCCTTG				1q21	PREDICTED: Rattus norvegicus capicua homolog (Drosophila) (predicted) (Cic_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660691-S	ILMN_49956	LOC497698	XM_579523.1	XM_579523.1		497698	62660691	XM_579523.1	LOC497698	XP_579523.1	ILMN_1370341	0000130736	S	34	GCGAACCAAAAGCGGTGCTTCTCAAAGCCGCGTACGATGTGTCTTCCTTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031692 (LOC497698), mRNA.					
Rattus norvegicus	RefSeq	GI_62647702-S	ILMN_56296	LOC500234	XM_580050.1	XM_580050.1		500234	62647702	XM_580050.1	LOC500234	XP_580050.1	ILMN_1363193	0001770019	S	826	TGCAGCAAGGAGGTCAGGCTTTCCAGAGGGCTGCCTGGGGCTTAAGTCAA					PREDICTED: Rattus norvegicus LOC500234 (LOC500234), mRNA.					
Rattus norvegicus	RefSeq	GI_62663898-S	ILMN_56437	LOC291313	XM_225571.3	XM_225571.3		291313	62663898	XM_225571.3	LOC291313	XP_225571.3	ILMN_1371633	0002470050	S	995	CTCTGGGAAATACAGAGTTGGCACCCTTGTCGTGTGCCTCAGCACCAAAG					PREDICTED: Rattus norvegicus similar to low molecular weight glutenin (LOC291313), mRNA.					
Rattus norvegicus	RefSeq	GI_8393315-S	ILMN_299416	EPO	NM_017001.1	NM_017001.1		24335	8393315	NM_017001.1	Epo	NP_058697.1	ILMN_1351138	0006450082	S	1054	GACAGCCAAACTCATCTAGTGCCCTGCCGGAACTGTAATCCACGCCAGCC	12	-	19552042-19552091	12q12	Rattus norvegicus erythropoietin (Epo), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42523] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for an erythrocyte to attain its fully functional state [goid 43249] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence IEP]	Interacting selectively with the erythropoietin receptor [goid 5128] [evidence TAS]; Interacting selectively with the erythropoietin receptor [goid 5128] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The binding activity of a molecule that brings together a molecule of the JAK signal transduction pathway and one or more other molecules of the pathway, permitting them to function in a coordinated way [goid 8269] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_61557306-S	ILMN_267825	ITGB3BP	NM_001013213.1	NM_001013213.1		362548	61557306	NM_001013213.1	Itgb3bp	NP_001013231.1	ILMN_1373985	0000110324	S	656	ACAGGCTTTGGAGGGCAACAGACAACTTGAAGATCTCCTTGGTGTTTCCC	5	-	120474314-120474360:120476690-120476692	5q33	Rattus norvegicus integrin beta 3 binding protein (beta3-endonexin) (Itgb3bp), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_20806124-S	ILMN_279220	CXCL10	NM_139089.1	NM_139089.1		245920	20806124	NM_139089.1	Cxcl10	NP_620789.1	ILMN_1364335	0002850082	S	597	TCTAAGAGCTGGTCCGAATCTTCCCTCAGGCAGCTATGACGGCTCTCCTA	14	+	17267646-17267695	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 10 (Cxcl10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any process involved in the controlled movement of a cell [goid 6928] [evidence TAS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; The regulated release of proteins from a cell or group of cells [goid 9306] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IDA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scyb10; IP-10	Scyb10; IP-10
Rattus norvegicus	RefSeq	GI_62079014-S	ILMN_274069	RGD1309676	NM_001014140.1	NM_001014140.1		361118	62079014	NM_001014140.1	RGD1309676	NP_001014162.1	ILMN_1353579	0002760309	S	1167	CAACTCAGTGGTAGAGCATTTACCTAACGTGCACATGGCCCTGGGTAGGA	16	-	17425747-17425796	16p14	Rattus norvegicus similar to RIKEN cDNA 5730469M10 (RGD1309676), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62644069-S	ILMN_274238	CHD1L_PREDICTED	XM_001060704.1	XM_001060704.1		310707	109467235	XM_001060704.1	Chd1l_predicted	XP_001060704.1	ILMN_1350539	0001500402	S	2750	GGTCCAGTTTTCAGCAACCAGTTAGTTTGATTCATGTCCCCAGAGCAGCC				2q34	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 1-like (predicted) (Chd1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981439-S	ILMN_288687	PTK2	NM_013081.1	NM_013081.1		25614	6981439	NM_013081.1	Ptk2	NP_037213.1	ILMN_1359854	0000840110	S	4345	CCCAGGGAGGATCCCGCAGACAAACAGGGATGTGGTTTTCTTTAGATGTC	7	-	110933433-110933482	7q34	Rattus norvegicus PTK2 protein tyrosine kinase 2 (Ptk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence TAS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; Specialised type of cell-cell junction in cardiac muscle, which mediates mechanical and electrochemical integration between the individual cardiomyocytes. Consist of three different kinds of substructures: adherens junctions, desmosomes and gap junctions [goid 14704] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence IMP]; Generation of a long process from a neuron whose cell body resides in the central nervous system. The process carries efferent (outgoing) action potentials from the cell body towards target cells [goid 21955] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IMP]; The regulation of the levels, transport, and metabolism of chloride ions within a cell or between a cell and its external environment [goid 30644] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; The directed movement of the nucleus to a specific location within a cell [goid 40023] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organ of an organism [goid 46621] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51964] [evidence ISS]; Any process that activates or increases the rate or extent of glial cell proliferation [goid 60252] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence TAS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]	FRNK; FAK	FRNK; FAK
Rattus norvegicus	RefSeq	GI_11559946-S	ILMN_294734	CASK	NM_022184.1	NM_022184.1		29647	11559946	NM_022184.1	Cask	NP_071520.1	ILMN_1361780	0003450121	S	3715	GCATGTGGACAGTCGCGAGCGTTTATGCTGTCGGTGTGTCTGTGTTGGAC				Xq12	Rattus norvegicus calcium/calmodulin-dependent serine protein kinase (MAGUK family) (Cask), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IPI]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence TAS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence TAS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence IPI]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605783-S	ILMN_288888	MRRF	NM_001008354.1	NM_001008354.1		311903	56605783	NM_001008354.1	Mrrf	NP_001008355.1	ILMN_1353840	0006520551	S	3224	GCCACAAGGTGGAGGCTTTGCCAGGGTTCAGTTCTGCGAGTGACCAGAAT	3	+	15303369-15303418	3p11	Rattus norvegicus mitochondrial ribosome recycling factor (Mrrf), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]		MGC93722	MGC93722
Rattus norvegicus	RefSeq	GI_62663455-S	ILMN_55797	LOC498735	XM_574011.2	XM_574011.2		498735	109504849	XM_574011.2	LOC498735	XP_574011.2	ILMN_2040347	0006040431	S	1316	CTGGCAAGCCAGAGCAAAATGTTCCCAAATGGAGCTTGAGCACTGCTGGC	17	+	36311648-36311697	17p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC43581 (LOC498735), mRNA.					
Rattus norvegicus	RefSeq	GI_62646917-S	ILMN_298686	IQUB	NM_001034130.1	NM_001034130.1		296936	77627756	NM_001034130.1	Iqub	NP_001029302.1	ILMN_1358887	0003130609	S	2149	CAAACACGTGGAGTGGTCGCCCTGGAACTGCATTCTGCTCACCAAGGATG				4q22	Rattus norvegicus IQ motif and ubiquitin domain containing (Iqub), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence ISS]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116166; TRS4; N-WASP	MGC116166; TRS4; N-WASP
Rattus norvegicus	RefSeq	GI_62651903-A	ILMN_284286	TRA1_PREDICTED	NM_001012197.1	NM_001012197.1		362862	58865965	NM_001012197.1	Tra1_predicted	NP_001012197.1	ILMN_1376625	0005690440	S	2798	GGAGCCTGAAGACACCACAGAAGACACCACAGATGACTCCGAGCAGGATG	7	-	23333877-23333926	7q13	Rattus norvegicus tumor rejection antigen gp96 (predicted) (Tra1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640753-S	ILMN_52690	RGD1308541_PREDICTED	XM_218829.4	XM_218829.4		308768	109458944	XM_218829.4	RGD1308541_predicted	XP_218829.4	ILMN_1375186	0000840035	S	5456	GATTCCCCGAGCGAGGATCCCCAAGCTAGTGAGCATAAAGAGTGCTCTCC	1	+	135470286-135470335	1q31	PREDICTED: Rattus norvegicus hypothetical LOC308768 (predicted) (RGD1308541_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662313-S	ILMN_61907	LOC502053	XM_577486.1	XM_577486.1		502053	62662313	XM_577486.1	LOC502053	XP_577486.1	ILMN_1370422	0004760324	S	242	GAACACCCTCTGTACCTTCTTGGAAACATGGATGGACAAGAACCCTGAGG				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502053), mRNA.					
Rattus norvegicus	RefSeq	GI_62662994-S	ILMN_64217	LIG4_PREDICTED	XM_225045.4	XM_225045.4		290907	109503588	XM_225045.4	Lig4_predicted	XP_225045.1	ILMN_1361941	0006200452	S	2728	TGAGCTGCGGTTTCGTGGAGCAAAGGTGGTTTCCCGCTTATCTGAAGGGG	16	+	84888067-84888116	16q12.5	PREDICTED: Rattus norvegicus ligase IV, DNA, ATP-dependent (predicted) (Lig4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656270-S	ILMN_57402	RGD1564148_PREDICTED	XM_220587.4	XM_220587.4		287415	109488348	XM_220587.4	RGD1564148_predicted	XP_220587.3	ILMN_1371405	0000940402	S	945	AGCGTGGAAGGTCCGCGAGCTCAAAAGAATCAAGCGAGACAGAGAAGACC	10	-	55392689-55392738	10q24	PREDICTED: Rattus norvegicus similar to microfibrillar-associated protein 1 (predicted) (RGD1564148_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718181-S	ILMN_68451	LOC501302	XM_576715.2	XM_576715.2		501302	109513230	XM_576715.2	LOC501302	XP_576715.1	ILMN_1353013	0004150390	S	917	GGACGGTCTTCAGCTCTGGTTCAATCTCTTGTGCCATTTACCCATCAGTG	Un|NW_047874.1	+	208254-208303		PREDICTED: Rattus norvegicus hypothetical LOC501302 (LOC501302), mRNA.					
Rattus norvegicus	RefSeq	GI_62718366	ILMN_68451	LOC501302	XM_576715.2	XM_576715.2		501302	109513230	XM_576715.2	LOC501302	XP_576715.1	ILMN_1650051	0005390204	S	1765	GCACTTAAGAGACAACCTGGGGGACCGCCTTTCATTATGTGTGCTAGAGG	Un|NW_047874.1	+	209940-209989		PREDICTED: Rattus norvegicus hypothetical LOC501302 (LOC501302), mRNA.					
Rattus norvegicus	RefSeq	GI_62651537-S	ILMN_68815	LOC503089	XM_578609.1	XM_578609.1		503089	62651537	XM_578609.1	LOC503089	XP_578609.1	ILMN_1348869	0005690372	S	251	GGGCAAGGCCACACTGACAGTAGACAAATCTTCTAGCACAGCATACATGG				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin gamma-chain (LOC503089), mRNA.					
Rattus norvegicus	RefSeq	GI_9506702-S	ILMN_293684	FN1	NM_019143.1	NM_019143.1		25661	9506702	NM_019143.1	Fn1	NP_062016.1	ILMN_1348956	0003780019	S	8076	GGCTGTGTCCAAACACCCCACAGGACTCACTGTCCCAACAATCCTAATTG	9	-	70702386-70702435	9q33	Rattus norvegicus fibronectin 1 (Fn1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; The aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate [goid 7044] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate [goid 7044] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IMP]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IMP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEA]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 16504] [evidence IEA]; Increases the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 16504] [evidence ISS]; Interacting selectively with mercury (Hg) ions [goid 45340] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	fn-1; FIBNEC	fn-1; FIBNEC
Rattus norvegicus	RefSeq	GI_62665299-S	ILMN_273687	RGD1561144_PREDICTED	XM_001077726.1	XM_001077726.1		307859	109508918	XM_001077726.1	RGD1561144_predicted	XP_001077726.1	ILMN_1361444	0002230025	S	936	CTCACGCCGCAGCTCCAGACTTGGATTTACAACATCACCCATGGCTCGGG				19q12	PREDICTED: Rattus norvegicus similar to N-acetylglucosamine 6-O-sulfotransferase (predicted) (RGD1561144_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657975-S	ILMN_286001	ROPN1	NM_001025628.1	NM_001025628.1		288053	71043745	NM_001025628.1	Ropn1	NP_001020799.1	ILMN_1350446	0000730288	S	611	GATGGAGGACCACCCCGGATCCCTTTCAGCACCTTCCAGTTTCTGTACAC	11	-	67917639-67917688	11q22	Rattus norvegicus ropporin, rhophilin associated protein 1 (Ropn1), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]	MGC116277	MGC116277
Rattus norvegicus	RefSeq	GI_62660553-S	ILMN_267136	GPR125_PREDICTED	XM_001057272.1	XM_001057272.1		305408	109500688	XM_001057272.1	Gpr125_predicted	XP_001057272.1	ILMN_1358441	0000060609	S	4334	GGACTGGGCTGTGGAAACATGAAACAACTGTGTAGCACTGCGAGGGCTTC				14q11	PREDICTED: Rattus norvegicus G protein-coupled receptor 125 (predicted) (Gpr125_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660506-S	ILMN_55026	LOC363385	XM_343720.2	XM_343720.2		363385	62660506	XM_343720.2	LOC363385	XP_343721.2	ILMN_1364011	0006840528	S	35	CTTTCAGTGCCGCGGGTTGTGTAATAGTTTTGGTAGGAAGGCATCATCCC					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC363385), mRNA.					
Rattus norvegicus	RefSeq	GI_62643555-S	ILMN_272774	TRIM59_PREDICTED	XM_001062051.1	XM_001062051.1		365813	109466755	XM_001062051.1	Trim59_predicted	XP_001062051.1	ILMN_1360516	0001340673	S	884	CGTGTGCAGATGTTGAAACAGAGACCACTTCCTGAGGTCCAGCCTGTTGA				2q33	PREDICTED: Rattus norvegicus tripartite motif-containing 59 (predicted) (Trim59_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641962-S	ILMN_269204	PHLDA2_PREDICTED	XM_001065824.1	XM_001065824.1		293637	109463277	XM_001065824.1	Phlda2_predicted	XP_001065824.1	ILMN_1361885	0004590593	S	308	ATCACCATGGCGCTGATCGACTACCAGAACCGTCGGGCGCTGGAGGAGTT				1q41	PREDICTED: Rattus norvegicus pleckstrin homology-like domain, family A, member 2 (predicted) (Phlda2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13994216-S	ILMN_297901	GALR1	NM_012958.1	NM_012958.1		50577	13994216	NM_012958.1	Galr1	NP_037090.1	ILMN_1356924	0000630440	S	503	GCCGGTGGCCTACTACCAGCGCCTTTTTCATCGGGACAGCAACCAAACCT	18	-	78873671-78873720	18q12.3	Rattus norvegicus galanin receptor 1 (Galr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IDA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IEA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IEA]; Combining with galanin to initiate a change in cell activity [goid 4966] [evidence IMP]; Interacting selectively and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators) [goid 42923] [evidence IDA]; Interacting selectively and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators) [goid 42923] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Galnr1	Galnr1
Rattus norvegicus	RefSeq	GI_62666444-S	ILMN_270124	RGD1560927_PREDICTED	XM_001063269.1	XM_001063269.1		501507	109512519	XM_001063269.1	RGD1560927_predicted	XP_001063269.1	ILMN_2039640	0007210148	S	176	AAGGAATGCCCGGAGCCAAGAATGATGCGGGAATCAAAGGCCACGGTGAC				Xq11	PREDICTED: Rattus norvegicus RGD1560927 (predicted) (RGD1560927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655939-S	ILMN_262386	RGD1306625_PREDICTED	XM_001064031.1	XM_001064031.1		360508	109490475	XM_001064031.1	RGD1306625_predicted	XP_001064031.1	ILMN_1373271	0001400601	S	258	GGCCCTCAGGAAGTGGCTGAAGACAAACTTGCACGGGTTTTTGGAGAAGC				10q12	PREDICTED: Rattus norvegicus LOC360508 (predicted) (RGD1306625_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138599-S	ILMN_275146	TSNAX	NM_022262.3	NM_022262.3		64028	52138599	NM_022262.3	Tsnax	NP_071598.1	ILMN_1352444	0003990347	S	1891	CCTGGCTTGAGCGTCGCCCGCAGCTGACACCACCACATGTTTTCATCTAG	19|NW_047542.1	-	135647-135696		Rattus norvegicus translin-associated factor X (Tsnax), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with single-stranded DNA [goid 3697] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an A2A adenosine receptor [goid 31687] [evidence IPI]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC93125; Trax	MGC93125; Trax
Rattus norvegicus	RefSeq	GI_34874916-S	ILMN_67274	LOC364352	XM_344375.2	XM_344375.2		364352	62661900	XM_344375.2	LOC364352	XP_344376.2	ILMN_1372539	0006040398	S	7071	TCAGGAGACCCCGTGGTTCAAGGAATGAAAGGCTTCGAGGCTGAGTTCAG				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC364352), mRNA.					
Rattus norvegicus	RefSeq	GI_62661900-S	ILMN_67274	LOC364352	XM_344375.2	XM_344375.2		364352	62661900	XM_344375.2	LOC364352	XP_344376.2	ILMN_1353706	0000360097	S	8517	CTGGTGGAGCCTGCTGAAAGGACTGAGGTGCCTGTGAAGTTGGAGTCTGT				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC364352), mRNA.					
Rattus norvegicus	RefSeq	GI_34874920-S	ILMN_67274	LOC364352	XM_344375.2	XM_344375.2		364352	62661900	XM_344375.2	LOC364352	XP_344376.2	ILMN_1354012	0006420341	S	6452	GTTCCCTGGGGAAGGCCCTGTAGTCCTGATAGCTATAAGTTCAGTGTTCA				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC364352), mRNA.					
Rattus norvegicus	RefSeq	GI_38371734-S	ILMN_284041	ANKRD36	NM_198684.1	NM_198684.1		305491	38371734	NM_198684.1	Ankrd36	NP_941956.1	ILMN_1359227	0004480368	S	1573	CTCTACGTAACAGCCTTTCTGGCACCCTGGACTGATCACAGTCAGCCCTG	14	+	86265333-86265382	14q21	Rattus norvegicus ankyrin repeat domain 36 (Ankrd36), mRNA.		The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]		MGC94422; Ankrd48	MGC94422; Ankrd48
Rattus norvegicus	RefSeq	GI_62718768-S	ILMN_60435	LOC363420	XM_343743.2	XM_343743.2		363420	62718768	XM_343743.2	LOC363420	XP_343744.2	ILMN_1364999	0000050463	S	773	GAACTGCCACCATCCTCTGTGGAGACAAGGAGGTTCTCTGAAGAGGCCGA					PREDICTED: Rattus norvegicus similar to phospholipase C-like 2 (LOC363420), mRNA.					
Rattus norvegicus	RefSeq	GI_62664022-S	ILMN_51856	THOC1_PREDICTED	XM_214625.3	XM_214625.3		291797	62664022	XM_214625.3	Thoc1_predicted	XP_214625.3	ILMN_1374214	0000060088	S	2796	GCGCACAGCTCCAGCTTCCTGGTACCCTCTGCACTAAGCAAATTAAGGCA					PREDICTED: Rattus norvegicus THO complex 1 (predicted) (Thoc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642841-S	ILMN_63714	SLC30A5_PREDICTED	XM_226722.4	XM_226722.4		294698	109464293	XM_226722.4	Slc30a5_predicted	XP_226722.3	ILMN_1355249	0004810010	S	2538	GAGCCCCAGCGGCGTGAACAGTGGAGGTGGATAATGTCAGTTCAGAGTGA	2	-	31608120-31608169	2q12	PREDICTED: Rattus norvegicus solute carrier family 30 (zinc transporter), member 5 (predicted) (Slc30a5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978878-S	ILMN_301878	GC	NM_012564.1	NM_012564.1		24384	6978878	NM_012564.1	Gc	NP_036696.1	ILMN_1350338	0007040348	S	1327	TGGCGGAACGACTGAGGACAAAAATGCCCAATGCCTCCCCGGAAGAGCTG	14	+	20192339-20192388	14p22	Rattus norvegicus group specific component (Gc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence ISS]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence TAS]; Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of vitamins into, out of, within or between cells. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body [goid 51183] [evidence IEA]	RATDBP02; Vdbp; DBP02	RATDBP02; Vdbp; DBP02
Rattus norvegicus	RefSeq	GI_38454261-S	ILMN_293466	KCNT2	NM_198762.1	NM_198762.1		304827	38454261	NM_198762.1	Kcnt2	NP_942057.1	ILMN_1349650	0004590484	S	3170	CCCAGCAACGACTGAATCTCTACAGGAGGTCGGAAAGACAGGAGCTTGCT	13	+	53781431-53781480	13q13	Rattus norvegicus potassium channel, subfamily T, member 2 (Kcnt2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of potassium by a channel that opens in response to stimulus by a sodium ion or ions. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. Sodium activated potassium channels have distinctive properties, including a large single channel conductance, subconductance states, and a block of single channel currents at positive potentials, similar to inward rectification [goid 5228] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Slick	Slick
Rattus norvegicus	RefSeq	GI_56090480-S	ILMN_267971	LOC679610	XM_001053265.1	XM_001053265.1		679610	109471673	XM_001053265.1	LOC679610	XP_001053265.1	ILMN_1368052	0005910332	S	494	AGTCTGTGTGCAGAAAAAATCGAAAAGCAGCCATGTTTTGTAGAGCCTGC	4	+	25081386-25081435	4q12	PREDICTED: Rattus norvegicus hypothetical protein LOC679609, transcript variant 2 (LOC679610), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638768-S	ILMN_65660	LOC502280	XM_577741.1	XM_577741.1		502280	62638768	XM_577741.1	LOC502280	XP_577741.1	ILMN_1358785	0002570128	S	797	GGCTGACATCTTACCTGCTGTGATTGACATCACCGGCTTTTACAATGTGG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502280), mRNA.					
Rattus norvegicus	RefSeq	GI_62663530	ILMN_60378	LOC364699	XM_344588.2	XM_344588.2		364699	62663530	XM_344588.2	LOC364699	XP_344589.2	ILMN_1650317	0004760746	S	156	GGAACGGATGTACAGGAGTGTCTCTGTGTGGAACCTGAATGAATCTGCTG				17p12	PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC364699), mRNA.					
Rattus norvegicus	RefSeq	GI_57114273-S	ILMN_270437	V1RE7	NM_001008961.1	NM_001008961.1		494304	57114273	NM_001008961.1	V1re7	NP_001008961.1	ILMN_1369118	0004120056	S	325	GTCTTCCAAGCCATCACCATCAGTCCCAGAAACTCCTGCCTTAACGGTCT	1	-	58171791-58171840	1q12	Rattus norvegicus vomeronasal 1 receptor, E7 (V1re7), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643098-S	ILMN_54079	LOC499554	XM_574879.1	XM_574879.1		499554	62643098	XM_574879.1	LOC499554	XP_574879.1	ILMN_1363227	0000520300	S	948	GTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATGCCTAGAGCAGATG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499554), mRNA.					
Rattus norvegicus	RefSeq	GI_54020748-S	ILMN_291117	RASL11B	NM_001002830.2	NM_001002830.2		305302	54020748	NM_001002830.2	Rasl11b	NP_001002830.1	ILMN_1363087	0002900725	S	1640	GGCCCGGCTGAGTTGTGGCTGGGTGGCTGAGATAGTAAAATGCTGTCTTC	14	-	36393071-36393120	14p11	Rattus norvegicus RAS-like family 11 member B (Rasl11b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644342-S	ILMN_48537	LOC295350	XM_227564.3	XM_227564.3		295350	62644342	XM_227564.3	LOC295350	XP_227564.3	ILMN_1371426	0006650161	S	475	GGCCCTACACAGAGGAGCCTGTCACCTGGGCCTATTATGAGGTCACCAAA					PREDICTED: Rattus norvegicus similar to chitinase, acidic (LOC295350), mRNA.					
Rattus norvegicus	RefSeq	GI_62667423-S	ILMN_61833	LOC501648	XM_577044.1	XM_577044.1		501648	62667423	XM_577044.1	LOC501648	XP_577044.1	ILMN_1367022	0007040278	S	23	TGCAGTCTGGAGACTCTGACAAAGGAGCAGGGAGCAGTCGCAGCTGCTTT					PREDICTED: Rattus norvegicus similar to motile sperm domain containing 1 (LOC501648), mRNA.					
Rattus norvegicus	RefSeq	GI_62639329-S	ILMN_49753	LOC308488	XM_218473.3	XM_218473.3		308488	62639329	XM_218473.3	LOC308488	XP_218473.3	ILMN_1373110	0003440673	S	2003	AGCTGGTCAAGCTAGTTAGTCTAAAAGCCACAGGCCTGGTGCACTGCGGC				1q21	PREDICTED: Rattus norvegicus similar to zinc finger protein 565 (LOC308488), mRNA.					
Rattus norvegicus	RefSeq	GI_25742741-S	ILMN_58639	ARNT2	NM_012781.2	NM_012781.2		25243	80861406	NM_012781.2	Arnt2	NP_036913.2	ILMN_1351096	0003130184	S	2146	GGCGACCCGACGCAGGGGACTGGCAACTATAACATCGAGGACTTTGCTGA	1	-	140539831-140539880	1q31	Rattus norvegicus aryl hydrocarbon receptor nuclear translocator 2 (Arnt2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with an aryl hydrocarbon receptor [goid 17162] [evidence ISS]; Interacting selectively with an aryl hydrocarbon receptor [goid 17162] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with an aryl hydrocarbon receptor [goid 17162] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with an aryl hydrocarbon receptor [goid 17162] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50979277-S	ILMN_272048	IL22RA2	NM_001003404.1	NM_001003404.1		444986	50979277	NM_001003404.1	Il22ra2	NP_001003404.1	ILMN_1369853	0002480377	S	2247	CCACGTGTGGTGGCAGCATTCATGTTGTAAGATGCGGTAGTCTAAAGCCT	1	+	14890685-14890734	1p12	Rattus norvegicus interleukin 22 receptor, alpha 2 (Il22ra2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat3 protein [goid 42516] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence TAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with interleukin-22 [goid 42017] [evidence TAS]; Combining with interleukin-22 to initiate a change in cell activity [goid 42018] [evidence ISS]	Crf2-s1	Crf2-s1
Rattus norvegicus	RefSeq	GI_61557238-S	ILMN_299938	CBFB	NM_001013191.1	NM_001013191.1		361391	61557238	NM_001013191.1	Cbfb	NP_001013209.1	ILMN_1357005	0001770736	S	2563	GTCCAGCAGTAAAAAGATCACATGGTACTCCTGTTGTTGCCATCCCTCTG	19	+	35029103-35029152	19q11	Rattus norvegicus core-binding factor, beta subunit (Cbfb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby a relatively unspecialized precursor cell acquires specialized features of B cells, T cells, or natural killer cells [goid 30098] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Pebp2	Pebp2
Rattus norvegicus	RefSeq	GI_62718536-S	ILMN_66956	LOC501419	XM_576830.1	XM_576830.1		501419	62718536	XM_576830.1	LOC501419	XP_576830.1	ILMN_1349216	0002260707	S	1149	GGCCTCTGGGGTCATACCAGGTTTTACAACACTCAGTGCGTGGACCACAG					PREDICTED: Rattus norvegicus LOC501419 (LOC501419), mRNA.					
Rattus norvegicus	RefSeq	GI_62643460-S	ILMN_269375	ALG5	NM_001025407.1	NM_001025407.1		295051	70794775	NM_001025407.1	Alg5	NP_001020578.1	ILMN_1353221	0000520270	S	925	CCGACTTCGGTATCTGACCGGTGCCTGGAGGCTTGAGCAAACAAGGAAAG	2	+	143975266-143975315	2q26	Rattus norvegicus asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase) (Alg5), mRNA.		The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928791-S	ILMN_271709	PLA2G1B	NM_031585.1	NM_031585.1		29526	13928791	NM_031585.1	Pla2g1b	NP_113773.1	ILMN_1361743	0002190711	S	33	GCTTTGCTCACAGCAGGCGTTACTGCACACAGCATCAGCACTCGGGCTGT	12	-	42409423-42409459:42415144-42415156	12q16	Rattus norvegicus phospholipase A2, group IB, pancreas (Pla2g1b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, occurring at the tissue, organ, or organismal level of a multicellular organism [goid 44240] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, occurring at the tissue, organ, or organismal level of a multicellular organism [goid 44240] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes [goid 46470] [evidence IEA]; The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes [goid 46470] [evidence ISS]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence ISS]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IDA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence IEA]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate; requires Ca2+ [goid 47498] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate; requires Ca2+ [goid 47498] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653991-S	ILMN_273483	RGD1565496_PREDICTED	XM_001076292.1	XM_001076292.1		300783	109484868	XM_001076292.1	RGD1565496_predicted	XP_001076292.1	ILMN_1350417	0003130735	S	972	CAGGTACCCCTTCTACATGCTGTCCTGTATTGACATGGACTGGAAGGTGC				8q24	PREDICTED: Rattus norvegicus similar to Butyrate-induced transcript 1 (predicted) (RGD1565496_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14010872-S	ILMN_295784	CLTA	NM_031974.1	NM_031974.1		83800	14010872	NM_031974.1	Clta	NP_114180.1	ILMN_1355725	0002260427	S	846	CGCCCCTGGTGCATTGAAGAGCCACCCTGTGGAAACACTACGTCTCCGAT	5	+	60502154-60502170:60502171-60502203	5q22	Rattus norvegicus clathrin, light chain (Lca) (Clta), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IDA]; A clathrin coat found on a vesicle [goid 30125] [evidence NAS]; A clathrin coat found on a vesicle of the trans-Golgi network [goid 30130] [evidence IEA]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [evidence IEA]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [evidence NAS]; A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A clathrin coat found on a vesicle of the trans-Golgi network [goid 30130] [evidence IEA]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; The lipid bilayer surrounding a clathrin-coated endocytic vesicle [goid 30669] [pmid 11007890] [evidence EXP]; The lipid bilayer surrounding a clathrin-coated endocytic vesicle [goid 30669] [pmid 10908605] [evidence EXP]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEP]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	LCA1; LCA2; MGC105384; LCA3	LCA1; LCA2; MGC105384; LCA3
Rattus norvegicus	RefSeq	GI_13027407-S	ILMN_291720	FGF20	NM_023961.1	NM_023961.1		66017	13027407	NM_023961.1	Fgf20	NP_076451.1	ILMN_1354089	0005360020	S	516	CGGGACTCCAAGGGACGGTGCCAGGTCCAAAAGACACCAAAAGTTTACCC	16	+	55393621-55393670	16q12.1	Rattus norvegicus fibroblast growth factor 20 (Fgf20), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641607	ILMN_48852	LOC309108	XM_219480.3	XM_219480.3		309108	62641607	XM_219480.3	LOC309108	XP_219480.2	ILMN_1650538	0001340017	S	1827	TTGAGGACTCACTGGGTAGGCAGGAGCGCAAGGTCCAGGTATGCCGGAAA					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC35138 (predicted) (LOC309108), mRNA.					
Rattus norvegicus	RefSeq	GI_62078642-S	ILMN_280445	PQBP1	NM_001013957.1	NM_001013957.1		302557	62078642	NM_001013957.1	Pqbp1	NP_001013979.1	ILMN_1365577	0001770053	S	905	GCAGAAGCCTCCCGCAGCAAACAGCAGGACTGAATTTGTGTTCCCTGTAG	X	+	26642421-26642447:26642448-26642470	Xq13	Rattus norvegicus polyglutamine binding protein 1 (Pqbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645504-A	ILMN_283284	FSHB	NM_001007597.1	NM_001007597.1		25447	58531200	NM_001007597.1	Fshb	NP_001007598.1	ILMN_1376931	0006520114	S	248	CTGGCTGTGCCCGCCACTCAGACTCCCTCTACACATATCCAGTAGCCACT	3	-	92569439-92569488	3q33	Rattus norvegicus follicle stimulating hormone, beta polypeptide (Fshb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A gonadotrophic glycoprotein hormone secreted, in mammals, by the anterior pituitary gland; consists of alpha and beta subunits, the latter of which confers hormonal specificity [goid 16914] [evidence TAS]	The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals mediated by follicle-stimulating hormone [goid 42699] [evidence TAS]; The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules [goid 60011] [evidence IEA]; The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules [goid 60011] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; A gonadotrophic glycoprotein hormone secreted, in mammals, by the anterior pituitary gland [goid 16913] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62667414-S	ILMN_61210	RGD1564736_PREDICTED	XM_579035.2	XM_579035.2		367932	109511219	XM_579035.2	RGD1564736_predicted	XP_579035.2	ILMN_1361665	0005130131	S	235	TCCGGACCGAGAAGGGAGAGAAGGAGGAGGGATGCAGATGCACCGCGGAA	X	+	138247638-138247687	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1564736_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664624-S	ILMN_51291	MAPK4	XM_225726.4	XM_225726.4		54268	109506788	XM_225726.4	Mapk4	XP_225726.4	ILMN_1372492	0002940167	S	2007	GTTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTACCGG	18	-	70708280-70708329	18q12.2	PREDICTED: Rattus norvegicus mitogen-activated protein kinase 4 (Mapk4), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978858-S	ILMN_287097	FTH1	NM_012848.1	NM_012848.1		25319	6978858	NM_012848.1	Fth1	NP_036980.1	ILMN_1359793	0004610112	S	679	GCTGACGTCCCCAAGGCCATGTGACTTTACTGGTCACTGAGGCAGTGCAT	1	+	212432590-212432639	1q43	Rattus norvegicus ferritin, heavy polypeptide 1 (Fth1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O [goid 4322] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Fth	Fth
Rattus norvegicus	RefSeq	GI_62642451-S	ILMN_64953	LOC499369	XM_579953.1	XM_579953.1		499369	62642451	XM_579953.1	LOC499369	XP_579953.1	ILMN_1362537	0001340273	S	1875	CCTGGAGACGGCCATGCAGGATGCGGGGTGCTGATTTTTAATGCTTCTCG					PREDICTED: Rattus norvegicus LOC499369 (LOC499369), mRNA.					
Rattus norvegicus	RefSeq	GI_62639003-S	ILMN_287241	RGD1562235_PREDICTED	XM_001069001.1	XM_001069001.1		502294	109461091	XM_001069001.1	RGD1562235_predicted	XP_001069001.1	ILMN_1356023	0001980161	S	2286	GAGAGTCCATGCCGGAGAGAGAACGTATAACTGCAGGAAGGGCAGGAGGG				1q12	PREDICTED: Rattus norvegicus similar to mKIAA1431 protein (predicted) (RGD1562235_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012391-S	ILMN_264682	RT1-S2	NM_001008857.1	NM_001008857.1		24994	57012391	NM_001008857.1	RT1-S2	NP_001008857.1	ILMN_1368215	0001170528	S	328	CAGAGATGGGAGTCTCCTCCATCCACTGTCTCCAACACAGCCATGATTGC	20	+	2795133-2795142:2795275-2795314	20p12	Rattus norvegicus RT1 class Ib, locus H2-TL-like (S2) (RT1-S2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1.S1	RT1.S1
Rattus norvegicus	RefSeq	GI_62648690-S	ILMN_59109	OTUD6B_PREDICTED	XM_232795.4	XM_232795.4		297911	109474717	XM_232795.4	Otud6b_predicted	XP_232795.4	ILMN_1364412	0004590156	S	776	GCAGAGCCATTCAGACGACTTCCTGCCATTCCTAACCAACCCCAACACAG	5	-	29274049-29274098	5q13	PREDICTED: Rattus norvegicus OTU domain containing 6B (predicted) (Otud6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651664-S	ILMN_297374	METTL7B	NM_001024276.1	NM_001024276.1		366792	66730428	NM_001024276.1	Mettl7b	NP_001019447.1	ILMN_1350967	0006020519	S	1163	CCTCCCCACCATACACTCTATCCTGAACTACAGAGGAACAGAGAGCAGAC	7	-	2269447-2269496	7q11	Rattus norvegicus methyltransferase like 7B (Mettl7b), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. A droplet of triacylglycerol surrounded by a monolayer of phospholipids, interacting with the triacylglycerols and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins [goid 12511] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109041; RGD1305205	MGC109041; RGD1305205
Rattus norvegicus	RefSeq	GI_62653118-S	ILMN_266471	RGD1305138_PREDICTED	XR_008462.1	XR_008462.1		315329	109482995	XR_008462.1	RGD1305138_predicted		ILMN_1362876	0002640333	S	1555	GGGAAGGACATGGGGGCGACAGACTGGAAAGGTGCCAAAGGCTGACTATG				7q36	PREDICTED: Rattus norvegicus similar to expressed sequence AW556797 (predicted) (RGD1305138_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577476-S	ILMN_284436	OLR479	NM_001000305.1	NM_001000305.1		295748	47577476	NM_001000305.1	Olr479	NP_001000305.1	ILMN_1351245	0004210717	S	151	TACAGCCCTCAGCTTCATACACCCATGTACTTTTTCCTCAGTCACTTGGC	3	-	69309949-69309998	3q24	Rattus norvegicus olfactory receptor 479 (Olr479), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-69206521-69205580_ORF; Olr479	ratchr3-69206521-69205580_ORF; Olr479
Rattus norvegicus	RefSeq	GI_62642211-S	ILMN_53908	RGD1564130_PREDICTED	XM_347206.3	XM_347206.3		368042	109460085	XM_347206.3	RGD1564130_predicted	XP_347207.3	ILMN_1370131	0001240086	S	7027	TGTGTCTGGCCCTGCACCCAGGCATCAACTTAAAACCATCAGACCTCAGT	1	+	241286262-241286311	1q53	PREDICTED: Rattus norvegicus similar to TBP-associated factor 172 (TAF-172) (TAF(II)170) (predicted) (RGD1564130_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663789-S	ILMN_270863	RGD1562213_PREDICTED	XM_001068553.1	XM_001068553.1		498791	109506122	XM_001068553.1	RGD1562213_predicted	XP_001068553.1	ILMN_1349686	0001410373	S	541	GCACAGCCCAAAGGAAAGCTGTACCCGGACAAGGTCAAAAACGACCGGGG				17q12.3	PREDICTED: Rattus norvegicus similar to urocortin III (predicted) (RGD1562213_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656331-S	ILMN_60818	CENTB1_PREDICTED	XM_213365.3	XM_213365.3		287443	109488393	XM_213365.3	Centb1_predicted	XP_213365.2	ILMN_1364176	0007000692	S	2284	CGTAACTCTGCTACGATTGGCAAAGATGAGGGAGGCTGAAGCGGCCCAGG	10	-	56725955-56725996:56726344-56726351	10q24	PREDICTED: Rattus norvegicus centaurin, beta 1 (predicted) (Centb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717756-S	ILMN_68975	LOC501214	XM_576637.1	XM_576637.1		501214	62717756	XM_576637.1	LOC501214	XP_576637.1	ILMN_1353355	0002360195	S	523	CGGGGATAAAGTCAGGGAGAGTGAGTGCCCAGTTGTGCATTTGCAAAGCC					PREDICTED: Rattus norvegicus LOC501214 (LOC501214), mRNA.					
Rattus norvegicus	RefSeq	GI_6978826-S	ILMN_296477	FABP2	NM_013068.1	NM_013068.1		25598	6978826	NM_013068.1	Fabp2	NP_037200.1	ILMN_1373706	0001850056	S	423	GGAGCCTGGCGCAATGCAGAAGGGCTAGCTTGGTGTCGGATTCCTTTCTC	2	+	219604956-219605005	2q42	Rattus norvegicus fatty acid binding protein 2, intestinal (Fabp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence ISS]; The region that lies just beneath the plasma membrane on the apical edge of a cell [goid 45179] [evidence IDA]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence IEP]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence IDA]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of long-chain fatty acids into, out of, within or between cells. Long-chain fatty acids have a chain length of greater than 12 carbons [goid 5324] [evidence IDA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IPI]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IPI]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence TAS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	FABP	FABP
Rattus norvegicus	RefSeq	GI_62645459-S	ILMN_274137	LOC690364	XR_006769.1	XR_006769.1		690364	109488036	XR_006769.1	LOC690364		ILMN_1363975	0003610519	S	484	CCGAGCTGCTGGAGCCCATTCCATATGAATTCATGGCCTAATGTACGCAG	10	-	37536435-37536484	10q22	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC690364), mRNA.					
Rattus norvegicus	RefSeq	GI_62665807-S	ILMN_67006	AGPAT3_PREDICTED	XM_215367.4	XM_215367.4		294324	109509247	XM_215367.4	Agpat3_predicted	XP_215367.2	ILMN_1356104	0001770341	S	1659	TCACGGGGGCAGGTCAGCTGGATTCTTGTCCCACAGCGCTCTTTTGTCCT	20	+	10747523-10747572	20p12	PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 3 (predicted) (Agpat3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079120-S	ILMN_295114	RGD1359529	NM_001014193.1	NM_001014193.1		362626	62079120	NM_001014193.1	RGD1359529	NP_001014215.1	ILMN_1366485	0000780086	S	2460	ACTGCACTTTACTGAGGGGTTCGTGTCCAGCATCAGCTCACCTGCCTGAG	5	+	153702308-153702357	5q36	Rattus norvegicus similar to chromosome 1 open reading frame 63 (RGD1359529), mRNA.					
Rattus norvegicus	RefSeq	GI_57528218-S	ILMN_290672	CCDC98	NM_001009633.1	NM_001009633.1		289468	57528218	NM_001009633.1	Ccdc98	NP_001009633.1	ILMN_1359135	0002760603	S	1177	GGACAAAGCCTCCTCAAGCAGCCTCGATATAGACACAGAGGTGGGGAGCC	14	+	10094253-10094302	14p22	Rattus norvegicus coiled-coil domain containing 98 (Ccdc98), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94265	MGC94265
Rattus norvegicus	RefSeq	GI_62647270-S	ILMN_58926	RGD1564605_PREDICTED	XM_347220.3	XM_347220.3		368057	109472061	XM_347220.3	RGD1564605_predicted	XP_347221.2	ILMN_1372100	0002640725	S	3456	CATGGAAGCTTAGGTGGGCTGGGGCAAGCAGAAAAAACGAGAGAAGGGAG	4	-	80531762-80531811	4q24	PREDICTED: Rattus norvegicus similar to Homeobox protein A10 (predicted) (RGD1564605_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655455-S	ILMN_264311	ASB18_PREDICTED	XM_001066456.1	XM_001066456.1		316614	109487496	XM_001066456.1	Asb18_predicted	XP_001066456.1	ILMN_1356504	0000460102	S	1121	CGCCGGTGCCCGCTGTCATTGAAGTTCTGTTCAACTCCTACACTCAGCTC					PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing 18 (predicted) (Asb18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654699-S	ILMN_48026	LOC316229	XM_244043.3	XM_244043.3		316229	62654699	XM_244043.3	LOC316229	XP_244043.3	ILMN_1373094	0001340671	S	4618	GAGTCCTTCCTCTGAGCTTTCTCTGGAAGTGTCTGGGGCAGTCGGGAGCT				9q12	PREDICTED: Rattus norvegicus similar to RP3-330M21.4 (LOC316229), mRNA.					
Rattus norvegicus	RefSeq	GI_62644283-S	ILMN_68191	LOC499702	XM_575030.1	XM_575030.1		499702	62644283	XM_575030.1	LOC499702	XP_575030.1	ILMN_1364423	0002690619	S	4567	ATTAGTGGAGGGAAGCGCAAAGAATAAGGACAGCTCCAGGGGAAGCCCGC				2q42	PREDICTED: Rattus norvegicus similar to Synaptopodin-2 (Myopodin) (LOC499702), mRNA.					
Rattus norvegicus	RefSeq	GI_34876128-S	ILMN_267897	VMP_PREDICTED	XM_001062752.1	XM_001062752.1		291129	109505746	XM_001062752.1	Vmp_predicted	XP_001062752.1	ILMN_1372568	0001340672	S	647	TGGACACATGCAAGCTAGTCGGGGCTGTGCTCTTCTGCATTGGGGGCACA				17p11	PREDICTED: Rattus norvegicus vesicular membrane protein p24 (predicted) (Vmp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648517-S	ILMN_50619	LOC500386	XM_575744.1	XM_575744.1		500386	62648517	XM_575744.1	LOC500386	XP_575744.1	ILMN_1369909	0003190494	S	2656	GGTGGGGACAGGGGGAGGGCATTGAAGTTTTACAATCCTGGAATAGTTTG				5q11	PREDICTED: Rattus norvegicus similar to mKIAA1321 protein (LOC500386), mRNA.					
Rattus norvegicus	RefSeq	GI_62657577-S	ILMN_56963	LOC498048	XM_573248.1	XM_573248.1		498048	62657577	XM_573248.1	LOC498048	XP_573248.1	ILMN_1371063	0006350471	S	639	GAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACTGTCA					PREDICTED: Rattus norvegicus similar to ORF4 (LOC498048), mRNA.					
Rattus norvegicus	RefSeq	GI_62657248-S	ILMN_51838	LOC501731	XM_577130.1	XM_577130.1		501731	62657248	XM_577130.1	LOC501731	XP_577130.1	ILMN_1361353	0002260465	S	210	CTGCTGAAACTGAAGAAGGATTTTTCAGACAGCTTTGCTTCTACTCAGCC					PREDICTED: Rattus norvegicus similar to survival motor neuron domain containing 1 (LOC501731), mRNA.					
Rattus norvegicus	RefSeq	GI_62649342-S	ILMN_69776	LOC362557	XM_575879.1	XM_575879.1		362557	62649342	XM_575879.1	LOC362557	XP_575879.1	ILMN_1368592	0005220348	S	1857	CAGTGGGCGGGTGAGGAGGCTGTTGACAAATACTTCAAGCTGCCCCATGC				5q34-q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810475A17 (LOC362557), mRNA.					
Rattus norvegicus	RefSeq	GI_62643262-S	ILMN_62216	ECT2_PREDICTED	XM_342220.3	XM_342220.3		361921	109464643	XM_342220.3	Ect2_predicted	XP_342221.2	ILMN_1353146	0002350731	S	2708	GCTGTGAGCCGTCTGTCCAGCACATCTTCCTTAGCAGGTATTCCATCGCC	2	-	112970500-112970514:112973891-112973925	2q24	PREDICTED: Rattus norvegicus ect2 oncogene (predicted) (Ect2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651489-S	ILMN_66698	LOC503068	XM_578588.1	XM_578588.1		503068	62651489	XM_578588.1	LOC503068	XP_578588.1	ILMN_1367019	0005270066	S	820	GCAGGGATGCTGAGGACCACCAGGGGACGACAAGGACCAAAAAAGACTTC					PREDICTED: Rattus norvegicus similar to Ig heavy-chain V region precursor (LOC503068), mRNA.					
Rattus norvegicus	RefSeq	GI_62663855-S	ILMN_50049	LOC502138	XM_577590.1	XM_577590.1		502138	62663855	XM_577590.1	LOC502138	XP_577590.1	ILMN_1349859	0006380685	S	223	GAAAATGCCAGAAGCCTGTGACCTCACCACAGTGGAGCATAGGCCCATCC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502138), mRNA.					
Rattus norvegicus	RefSeq	GI_62650759-S	ILMN_53135	RGD1564906_PREDICTED	XM_576039.2	XM_576039.2		500661	109478304	XM_576039.2	RGD1564906_predicted	XP_576039.2	ILMN_1373424	0001780092	S	210	TCGAGGGAAGAGTCCTGCAAAAGGCCACAAAAACCACAAGCCCCTTCAGG	6	+	90950971-90951020	6q24	PREDICTED: Rattus norvegicus similar to Glutathione S-transferase 8 (GST 8-8) (Chain 8) (GST class-alpha) (predicted) (RGD1564906_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426810-S	ILMN_53700	SLC45A1	NM_144747.2	NM_144747.2		246258	62990186	NM_144747.2	Slc45a1	NP_653348.2	ILMN_1361870	0002320091	S	2059	CGATTACTACCAGAGTAAGAAGTTTGCAGGGTCCAGTGCGGACGGCACAC	5	-	167785071-167785120	5q36	Rattus norvegicus solute carrier family 45, member 1 (Slc45a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IMP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IMP]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Dnb5; Pasta; Past-A	Dnb5; Pasta; Past-A
Rattus norvegicus	RefSeq	GI_57527932-S	ILMN_293131	ARF3	NM_080904.2	NM_080904.2		140940	57527932	NM_080904.2	Arf3	NP_543180.1	ILMN_1360230	0000520575	S	2927	GGGCAGTGACATCTTGGTAACATCTGGCTTTGTGGTGGGGTTGGGGAGCT	7	-	137505509-137505558	7q36	Rattus norvegicus ADP-ribosylation factor 3 (Arf3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Ac1-253	Ac1-253
Rattus norvegicus	RefSeq	GI_62638748-S	ILMN_294159	LOC685793	XM_001065293.1	XM_001065293.1		685793	109457813	XM_001065293.1	LOC685793	XP_001065293.1	ILMN_1349432	0002640092	S	1343	TCAAAGAAGACAACCCACTCTCCCACAGAACCCCATTTGAGGATAGGCCC	1	-	50071067-50071116	1q12	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC685793), mRNA.					
Rattus norvegicus	RefSeq	GI_58000416-A	ILMN_292418	SPETEX-2G	NM_001009971.1	NM_001009971.1		361099	58000416	NM_001009971.1	Spetex-2G	NP_001009971.1	ILMN_1376853	0003130082	S	338	CCATGGCGAAGTACAAGGAGCTCATACAAGAGAACAATTCCTACCGCATC	15	-	5547521-5547525:5547968-5548012	15p16	Rattus norvegicus Spetex-2G protein (Spetex-2G), mRNA.					
Rattus norvegicus	RefSeq	GI_62657375-S	ILMN_276555	RGD1559519_PREDICTED	XR_009494.1	XR_009494.1		363708	109492277	XR_009494.1	RGD1559519_predicted		ILMN_1369472	0002850110	S	502	GGTCCCAGCCGATTAGGAAACAGGACCAGGCCAGAGGCTTTTGCACAGAA				10q32.3	PREDICTED: Rattus norvegicus similar to ribosomal protein L14 (predicted) (RGD1559519_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506376-S	ILMN_272907	AES	NM_019220.1	NM_019220.1		29466	9506376	NM_019220.1	Aes	NP_062093.1	ILMN_1361223	0003170142	S	1019	CCAGCTCACCCAGCTCTGGTTCCCTCAACCGCGGAAAGAAAGCATTGGCT	7	-	9616718-9616767	7q11	Rattus norvegicus amino-terminal enhancer of split (Aes), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence ISS]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]	Grg; MGC124620	Grg; MGC124620
Rattus norvegicus	RefSeq	GI_47577216-S	ILMN_297346	OLR735	NM_001000922.1	NM_001000922.1		405238	47577216	NM_001000922.1	Olr735	NP_001000922.1	ILMN_1350777	0004730100	S	414	ATGTGGCCTCCTGGTTGGAGCAGCATGGAGTGGGGGTTTGCTGCATTCTG	3	-	74571385-74571434	3q24	Rattus norvegicus olfactory receptor 735 (Olr735), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr735	Olr735
Rattus norvegicus	RefSeq	GI_16758737-S	ILMN_283165	PHOX2A	NM_053869.1	NM_053869.1		116648	16758737	NM_053869.1	Phox2a	NP_446321.1	ILMN_2039543	0005290767	S	1375	AGCTGGGCCACTCACTCCTTGAAATCAAGCAACCTGAAGAGTCCCACCGC	1	+	159277656-159277705	1q32	Rattus norvegicus paired-like homeobox 2a (Phox2a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of somatic motor neurons. Somatic motor neurons innervate skeletal muscle targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21523] [evidence ISS]; The process whose specific outcome is the progression of the locus ceruleus over time, from its formation to the mature structure. The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic [goid 21703] [evidence ISS]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IDA]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence ISS]; The process whose specific outcome is the progression of the parasympathetic nervous system over time, from its formation to the mature structure. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [goid 48486] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Arix	Arix
Rattus norvegicus	RefSeq	GI_6978630-S	ILMN_266452	CD4	NM_012705.1	NM_012705.1		24932	6978630	NM_012705.1	Cd4	NP_036837.1	ILMN_1368290	0001090519	S	1602	TTCAGACACTCAAGCACACCCAGCCAGCTTATTGATCCTCCGTAGCTGCC	4	-	160988609-160988658	4q42	Rattus norvegicus Cd4 molecule (Cd4), mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A conjugation process that results in the union of cellular and genetic information from compatible mating types [goid 747] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence IMP]; The process by which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation [goid 45058] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	W3/25; p55	W3/25; p55
Rattus norvegicus	RefSeq	GI_62644046-A	ILMN_269646	HSD3B1	NM_001007719.3	NM_001007719.3		360348	59797057	NM_001007719.3	Hsd3b1	NP_001007720.3	ILMN_1376535	0005890519	S	1425	CTTCCCTAATCCCCTGTCCAGAGACACACAGGTAGTTGTGCCTCAGCTGC	2	-	193501055-193501104	2q34	Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 (Hsd3b1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways resulting in the formation of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 6701] [evidence IDA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IEA]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IDA]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence ISS]; Catalysis of the reaction: a 3-oxo-delta(5)-steroid = a 3-oxo-delta(4)-steroid [goid 4769] [evidence IEA]; Catalysis of the reaction: a 3-oxo-delta(5)-steroid = a 3-oxo-delta(4)-steroid [goid 4769] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]	MGC105549	MGC105549
Rattus norvegicus	RefSeq	GI_62652135-S	ILMN_263642	MDM2_PREDICTED	XM_001080981.1	XM_001080981.1		314856	109481994	XM_001080981.1	Mdm2_predicted	XP_001080981.1	ILMN_1364670	0006100551	S	1561	TCCAGCTTCTCTCTGAACGCCATCGAGCCATGTGTGATTTGCCAGGGGCG				7q22	PREDICTED: Rattus norvegicus transformed mouse 3T3 cell double minute 2 homolog (mouse) (predicted) (Mdm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642608	ILMN_51523	LOC292282	XM_214765.2	XM_214765.2		292282	62642608	XM_214765.2	LOC292282	XP_214765.2	ILMN_1650859	0001190377	S	1	AGAGCTGGAGGCAGACATGAGGAAGCGAGTCAGTGTGAAGGGGCCTAGAC					PREDICTED: Rattus norvegicus similar to 2010315L10Rik protein (LOC292282), mRNA.					
Rattus norvegicus	RefSeq	GI_62652996-S	ILMN_51548	LOC312030	XM_231361.3	XM_231361.3		312030	62652996	XM_231361.3	LOC312030	XP_231361.3	ILMN_1355943	0001500037	S	4319	GGGAAGCCAGAAGAAAACGCTGGAAGAACCCACCAGCACTGGAGACGCAG				7q35	PREDICTED: Rattus norvegicus similar to mKIAA3013 protein (LOC312030), mRNA.					
Rattus norvegicus	RefSeq	GI_48976080-S	ILMN_284982	NOV	NM_030868.2	NM_030868.2		81526	48976080	NM_030868.2	Nov	NP_110495.1	ILMN_1351309	0002510082	S	1111	GTGCATTCGTTGAGGCAAACTGTTGCTGTCACAAGGCCCGCCATCACCTG	7	+	91169356-91169405	7q31	Rattus norvegicus nephroblastoma overexpressed gene (Nov), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666502-S	ILMN_56704	LOC367714	XM_346266.2	XM_346266.2		367714	62666502	XM_346266.2	LOC367714	XP_346267.1	ILMN_1357236	0001190184	S	1163	GCTGAGATCCAGATGGGGATATGAAGCGGATTGTGGTATTAGCCTCTTCC				Xq12	PREDICTED: Rattus norvegicus similar to mouse Rp2 protein (LOC367714), mRNA.					
Rattus norvegicus	RefSeq	GI_62667346-S	ILMN_57529	LOC501636	XM_577033.1	XM_577033.1		501636	62667346	XM_577033.1	LOC501636	XP_577033.1	ILMN_1369557	0000730390	S	344	TGGGGTTCAGAGCTAAACAAAGAATTCACAGCTGAGGAATGCCAAATGGC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501636), mRNA.					
Rattus norvegicus	RefSeq	GI_62663636-S	ILMN_60281	LOC498760	XM_574045.1	XM_574045.1		498760	62663636	XM_574045.1	LOC498760	XP_574045.1	ILMN_1363116	0002320041	S	540	AACTGTCTCCATGGGTTGTCTCCAAGTCACAGAGTGCTTTTGCACTGCGC					PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor 1 (LOC498760), mRNA.					
Rattus norvegicus	RefSeq	GI_62649998-S	ILMN_58483	LOC362655	XM_342973.2	XM_342973.2		362655	62649998	XM_342973.2	LOC362655	XP_342974.2	ILMN_1358551	0002030064	S	1091	GCCTAGAGGTACTGAGGATAAAGTACTATGGGATTGGCAAACTCTGGCGG				5q36	PREDICTED: Rattus norvegicus similar to casein kinase 1, gamma 3 (LOC362655), mRNA.					
Rattus norvegicus	RefSeq	GI_13786187-S	ILMN_302174	PPARGC1A	NM_031347.1	NM_031347.1		83516	13786187	NM_031347.1	Ppargc1a	NP_112637.1	ILMN_1367273	0001190328	S	1976	GGACGAATACCGCAGAGAGTATGAGAAGCGGGAGTCTGAAAGGGCCAAGC	14	+	64354089-64354138	14q11	Rattus norvegicus peroxisome proliferator-activated receptor gamma, coactivator 1 alpha (Ppargc1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IMP]; A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22904] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of gluconeogenesis [goid 45722] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of fatty acid oxidation [goid 46321] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IDA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]	Ppargc1	Ppargc1
Rattus norvegicus	RefSeq	GI_62654249-I	ILMN_70388	MAPKAPK3_PREDICTED	XM_576467.1	XM_576467.1		315994	62654249	XM_576467.1	Mapkapk3_predicted	XP_576467.1	ILMN_1376086	0002470348	S	23	TTGTCTGGCCCTTTAAGGCTGACCTAGCGGGGCCCCAAGTCCAGATGACG				8q32	PREDICTED: Rattus norvegicus mitogen-activated protein kinase-activated protein kinase 3 (predicted) (Mapkapk3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663831-S	ILMN_288015	RGD1566347_PREDICTED	XR_007800.1	XR_007800.1		361249	109505945	XR_007800.1	RGD1566347_predicted		ILMN_1370941	0004120039	S	1071	TGACAGTGGGCAGGAGGGGATAGACAGCATGGAGGTAGAAGGGATCAGTG				17q11	PREDICTED: Rattus norvegicus similar to BAF57 (predicted) (RGD1566347_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758019-S	ILMN_280256	NUP210	NM_053322.1	NM_053322.1		58958	16758019	NM_053322.1	Nup210	NP_445774.1	ILMN_1370368	0003140538	S	6706	GTCGGAGCCAGAACCTCACGAGTGGACGTGTATGGGCACCACATCAGTCA	4	-	125189797-125189846	4q34	Rattus norvegicus nucleoporin 210 (Nup210), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the nuclear pore complex [goid 17056] [evidence NAS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IDA]	Nup210	Nup210
Rattus norvegicus	RefSeq	GI_46048419-S	ILMN_275923	CLU	XM_001053033.1	XM_001053033.1		24854	109502529	XM_001053033.1	Clu	XP_001053033.1	ILMN_1362767	0002030059	S	1583	TGGACACAGTGGCAGAGAAAGCGCTACAGGAATACCGCAGGAAAAGCCGC				15p12	PREDICTED: Rattus norvegicus clusterin (Clu), mRNA.	An inclusion body resulting from dynein-dependent retrograde transport of an aggregated protein on microtubules [goid 16235] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647374-S	ILMN_64001	IL12RB2	XM_231873.4	XM_231873.4		171334	109472149	XM_231873.4	Il12rb2	XP_231873.4	ILMN_1362887	0006130494	S	2353	AGGGACCCTGACTCAAAACTGGGCAACCTGACCAGCCCCTTGACAGTCAC	4	-	96929962-96930011	4q31	PREDICTED: Rattus norvegicus interleukin 12 receptor, beta 2 (Il12rb2), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	Any process that modulates the frequency, rate or extent of T-helper cell differentiation [goid 45622] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62661842	ILMN_64124	LOC364468	XM_344454.2	XM_344454.2		364468	62661842	XM_344454.2	LOC364468	XP_344455.2	ILMN_1650223	0006350403	S	175	AATCCACAAGGAGCAGTCTCTGCCTACCTGCTGGACAGAGAGGGGCAGTT					PREDICTED: Rattus norvegicus similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) (LOC364468), mRNA.					
Rattus norvegicus	RefSeq	GI_9507180-S	ILMN_62721	TEF	NM_019194.2	NM_019194.2		29362	76362827	NM_019194.2	Tef	NP_062067.2	ILMN_1372235	0003130059	S	683	TTCAACCCTCGGAAGCACAAGTTTGCAGAGGAAGACCTGAAGCCCCAGCC	7	+	120174455-120174504	7q34	Rattus norvegicus thyrotrophic embryonic factor (Tef), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242292-S	ILMN_278645	HMGCL	NM_024386.1	NM_024386.1		79238	13242292	NM_024386.1	Hmgcl	NP_077362.1	ILMN_1371702	0002570279	S	1258	AGCAGCGCCTTTGCTGAAATGGTGGGCTCAATCTACTGCGGTGGCCGACT	5	+	154743841-154743890	5q36	Rattus norvegicus 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (Hmgcl), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Biosynthesis involves the formation of hydroxymethylglutaryl-CoA, which is cleaved to acetate and acetyl-CoA [goid 46951] [evidence IDA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IPI]; Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetyl-CoA + acetoacetate [goid 4419] [evidence IDA]; Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetyl-CoA + acetoacetate [goid 4419] [evidence IEA]; Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetyl-CoA + acetoacetate [goid 4419] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62654064-S	ILMN_295172	RGD1309873_PREDICTED	XM_001065048.1	XM_001065048.1		363112	109485113	XM_001065048.1	RGD1309873_predicted	XP_001065048.1	ILMN_1354720	0005390500	S	1572	CCGCTTTAAACTGGGATAGCTTCGACTCCAGCGACTACCAGCCCAAACTG				8q31	PREDICTED: Rattus norvegicus similar to hypothetical protein BC010003 (predicted) (RGD1309873_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16258814-S	ILMN_301872	KAP	NM_052802.1	NM_052802.1		24937	16258814	NM_052802.1	Kap	NP_434689.1	ILMN_1364732	0001090010	S	617	GGAAGTGGTCCTGGATGAGAAATGCTGTGTCAGGCACTTATGAGCTCTGC	4	-	170652233-170652282	4q43	Rattus norvegicus kidney androgen regulated protein (Kap), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62650471-S	ILMN_280898	WDR35_PREDICTED	XM_001072062.1	XM_001072062.1		298876	109479122	XM_001072062.1	Wdr35_predicted	XP_001072062.1	ILMN_1367572	0002320176	S	3118	AGAGGCGAAGAAGAGGACGAAGCCTTTGCGTGTGAAGAAGCTGTACGTGC				6q14	PREDICTED: Rattus norvegicus WD repeat domain 35 (predicted) (Wdr35_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717710-S	ILMN_66769	LOC501211	XM_580173.1	XM_580173.1		501211	62717710	XM_580173.1	LOC501211	XP_580173.1	ILMN_1358849	0000450647	S	781	GTTAGGGTGGTGCTGAGCGATCGCGGCTGGCCCTTTTTAAAGACCGGACT					PREDICTED: Rattus norvegicus LOC501211 (LOC501211), mRNA.					
Rattus norvegicus	RefSeq	GI_62655242-S	ILMN_271042	GMPPA	NM_001025056.1	NM_001025056.1		501167	68163562	NM_001025056.1	Gmppa	NP_001020227.1	ILMN_1372910	0002030162	S	1131	ATTGGGAAGGGGGTGACCATAGGCGAGGGTGTGCGTCTGCGGGAGAGTAT	9	+	74720031-74720080	9q33	Rattus norvegicus GDP-mannose pyrophosphorylase A (Gmppa), mRNA.		The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: GTP + alpha-D-mannose 1-phosphate = diphosphate + GDP-mannose [goid 4475] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16923947-S	ILMN_264048	CYP21A1	NM_057101.1	NM_057101.1		24298	16923947	NM_057101.1	Cyp21a1	NP_476442.1	ILMN_1372526	0005570037	S	1614	ACACTGGCTCTTCTCTGGGCACAACCCCTCAGTGCTCGGCAGTCATACCA	20	+	4128168-4128217	20p12	Rattus norvegicus cytochrome P450, subfamily 21A, polypeptide 1 (Cyp21a1), mRNA.		The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IMP]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: a steroid + donor-H2 + O2 = a 21-hydroxysteroid + acceptor + H2O [goid 4509] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	Cyp21; 21-OH	Cyp21; 21-OH
Rattus norvegicus	RefSeq	GI_61740630-S	ILMN_279759	TMED1	NM_001013432.1	NM_001013432.1		315461	61740630	NM_001013432.1	Tmed1	NP_001013450.1	ILMN_1349888	0003120435	S	1076	CTGGGAAGGAGACACGTCGGCAGCACACGTCTTGCCAGGACAGTCACTTT	8	-	20611345-20611394	8q13	Rattus norvegicus transmembrane emp24 protein transport domain containing 1 (Tmed1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]		MGC108769; Il1rl1l	MGC108769; Il1rl1l
Rattus norvegicus	RefSeq	GI_62648397-S	ILMN_66691	LOC502894	XM_578396.1	XM_578396.1		502894	62648397	XM_578396.1	LOC502894	XP_578396.1	ILMN_1374668	0003520647	S	568	AGCCCACCCAAGAGAGCCTGTACAGGGGCCCGGTGTCTGACAATACCATA				4q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9630033F20 gene (LOC502894), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_13929073-S	ILMN_294243	FIGF	NM_031761.1	NM_031761.1		360457	13929073	NM_031761.1	Figf	NP_113949.1	ILMN_1363525	0000770138	S	1297	GGGGCTCTTTTCTCTCAGGGCCCAAGCACACTCTTAAAGGAACACAGACG	X	-	50830759-50830808	Xq21	Rattus norvegicus c-fos induced growth factor (Figf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence TAS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IMP]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IEA]	Interacting selectively with any vascular endothelial growth factor receptor [goid 5172] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with vascular endothelial growth factor receptor 2 [goid 43184] [evidence ISS]; Interacting selectively with vascular endothelial growth factor receptor 3 [goid 43185] [evidence ISS]; Interacting selectively with vascular endothelial growth factor receptor 3 [goid 43185] [evidence IEA]	Vegf-d	Vegf-d
Rattus norvegicus	RefSeq	GI_47578062-S	ILMN_301633	OLR1014	NM_001000699.1	NM_001000699.1		404920	47578062	NM_001000699.1	Olr1014	NP_001000699.1	ILMN_1349098	0003120176	S	845	TCCTGAACCCCTTCATCTATACACTGAGGAACCAGCAAGTAAAACAAGCC	7	+	6800052-6800101	7q11	Rattus norvegicus olfactory receptor 1014 (Olr1014), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1014	Olr1014
Rattus norvegicus	RefSeq	GI_58866003-A	ILMN_295127	SERPINB6B	NM_001012214.1	NM_001012214.1		364705	58866003	NM_001012214.1	Serpinb6b	NP_001012214.1	ILMN_1376788	0006100601	S	1115	CAGCAGGACCAATGGGATTGTATTCTGTGGCCGGTTCTCCTCCCCATGAG	17	-	37816797-37816798:37816799-37816846	17p12	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B, member 6b (Serpinb6b), mRNA.			Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649535-S	ILMN_297791	RGD1305347_PREDICTED	XM_001072609.1	XM_001072609.1		362576	109477103	XM_001072609.1	RGD1305347_predicted	XP_001072609.1	ILMN_1372243	0005360600	S	720	TGCATTGACACCCCTCACGAAGGCAGCCCCGACCTACAAGTCCTGGGATT				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610528J11 (predicted) (RGD1305347_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653461-S	ILMN_54104	LOC500966	XM_580143.1	XM_580143.1		500966	62653461	XM_580143.1	LOC500966	XP_580143.1	ILMN_1354203	0007100333	S	284	CCACCAGTCAAGAAAGCCAACAACAAAAGCTGGAGAGCTGGGAGCGAAGG					PREDICTED: Rattus norvegicus LOC500966 (LOC500966), mRNA.					
Rattus norvegicus	RefSeq	GI_62639303-S	ILMN_290175	RGD1311713_PREDICTED	XM_001078570.1	XM_001078570.1		308478	109461603	XM_001078570.1	RGD1311713_predicted	XP_001078570.1	ILMN_1354308	0001780364	S	1305	CAGGCTCAGCTGCCTGTGGTGCGCTGAGAGCTTGTTGTACCACTGCCTGT				1q21	PREDICTED: Rattus norvegicus similar to SPRED-3 (predicted) (RGD1311713_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651951-S	ILMN_67854	LOC503125	XM_578645.1	XM_578645.1		503125	62651951	XM_578645.1	LOC503125	XP_578645.1	ILMN_1361793	0003190300	S	218	GCTGCTGGAGGAGAATGCTGTACTACGGGCTGAACTGCAAGCGCTCAAAC					PREDICTED: Rattus norvegicus similar to nuclear factor, interleukin 3 regulated (LOC503125), mRNA.					
Rattus norvegicus	RefSeq	GI_62638454-S	ILMN_50250	LOC499004	XM_574297.1	XM_574297.1		499004	62638454	XM_574297.1	LOC499004	XP_574297.1	ILMN_1372295	0001190390	S	614	GCTGCACCTCCATCTACCTGTTAGTTCTGTTGTGCAAGGCTTGTGTCGTC				1p11	PREDICTED: Rattus norvegicus similar to nidogen 2 (LOC499004), mRNA.					
Rattus norvegicus	RefSeq	GI_62645200-I	ILMN_69324	CYBRD1_PREDICTED	XM_575148.1	XM_575148.1		295669	62645200	XM_575148.1	Cybrd1_predicted	XP_575148.1	ILMN_1375782	0000630050	S	2	AGGCCACTGCAGCAACGCCAAGTTCTCCATCAGTCTGTCCTGGAGCATGG				3q21	PREDICTED: Rattus norvegicus cytochrome b reductase 1 (predicted) (Cybrd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657596-S	ILMN_58232	LOC498052	XM_573252.1	XM_573252.1		498052	62657596	XM_573252.1	LOC498052	XP_573252.1	ILMN_1350412	0002260170	S	355	CAGGGTGTGGTTCCAGAGGCTTTAGACCTGTGAGTTATGGAGTCCGTGGC					PREDICTED: Rattus norvegicus similar to keratin associated protein 13-1 (LOC498052), mRNA.					
Rattus norvegicus	RefSeq	GI_34447222-S	ILMN_289664	GRINL1A	NM_183402.1	NM_183402.1		192147	34447222	NM_183402.1	Grinl1a	NP_899652.1	ILMN_1365030	0001940064	S	1601	GAGACGCTGGATGTGAAATGCCGCACACGACACTCAGAAACCACAACCAG	8	-	75947588-75947637	8q24	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (Grinl1a), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	Any process by which the endoplasmic reticulum is maintained in a specific location within a cell and prevented from moving elsewhere [goid 51685] [evidence ISS]		Glurr	Glurr
Rattus norvegicus	RefSeq	GI_62660419	ILMN_69618	RGD1310774_PREDICTED	XM_223381.4	XM_223381.4		305317	109499652	XM_223381.4	RGD1310774_predicted	XP_223381.4	ILMN_1650575	0000870152	S	1719	TGCTGAATGGCAATATCGTGGAGGAGCTGGTGACTGTGGTCCATAGAGAG	14	-	41073219-41073223:41073916-41073960	14p11	PREDICTED: Rattus norvegicus similar to expressed sequence AA407526 isoform a (predicted) (RGD1310774_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658126-S	ILMN_50815	RGD1559917_PREDICTED	XM_212687.4	XM_212687.4		287993	109493495	XM_212687.4	RGD1559917_predicted	XP_212687.4	ILMN_1361190	0000430068	S	747	GCCGCAATTTGGTCCCGCCACATCGTGACTGCTACAGTATAGTTTCCTCC	11	+	81380142-81380191	11q23	PREDICTED: Rattus norvegicus similar to SMT3 suppressor of mif two 3 homolog 2 (predicted) (RGD1559917_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643851	ILMN_68360	LOC295258	XM_227433.3	XM_227433.3		295258	62643851	XM_227433.3	LOC295258	XP_227433.3	ILMN_1651071	0002690369	S	489	GAGACCTGCAATCAAGGATCCAAGGCAGATGTTGGTCAACGACATAGGAT					PREDICTED: Rattus norvegicus similar to TDPOZ3 (LOC295258), mRNA.					
Rattus norvegicus	RefSeq	GI_62650645	ILMN_70030	LOC366608	XM_345665.2	XM_345665.2		366608	62650645	XM_345665.2	LOC366608	XP_345666.2	ILMN_1650649	0006100056	S	3576	GACTAGACGTGCTGATGCGCCAGCTGTAGGAGTGTGAAAAAAGCACCTTG				6q21	PREDICTED: Rattus norvegicus similar to mKIAA0716 protein (LOC366608), mRNA.					
Rattus norvegicus	RefSeq	GI_62650312-S	ILMN_53303	LOC503009	XM_578522.1	XM_578522.1		503009	62650312	XM_578522.1	LOC503009	XP_578522.1	ILMN_1368341	0003060603	S	1636	TGGGTCAGAGGCCAGAGGGCCAAACAGCTCAGTGGAGACTCACGTTGCCT				6q11	PREDICTED: Rattus norvegicus similar to cyclin-dependent kinase-like 4 (LOC503009), mRNA.					
Rattus norvegicus	RefSeq	GI_62718062-S	ILMN_63455	LOC363331	XM_343669.2	XM_343669.2		363331	62718062	XM_343669.2	LOC363331	XP_343670.2	ILMN_1367516	0003840577	S	2350	GTGTACTCATGGGCACCAAGGACACGGTGGCCACAGGACTCACAGGGGCC					PREDICTED: Rattus norvegicus similar to S3-12 (LOC363331), mRNA.					
Rattus norvegicus	RefSeq	GI_42734404-A	ILMN_288456	ZMYND11	NM_203366.1	NM_203366.1		291259	42734402	NM_203366.1	Zmynd11	NP_976242.1	ILMN_1651198	0000290095	A	1341	GCGTGAAACAGAGAGAGTGGTGCGGGAAGCGCTGGAAAAGTTGCGTTCTG	17	+	71380033-71380072:71380277-71380286	17q12.1	Rattus norvegicus zinc finger, MYND domain containing 11 (Zmynd11), transcript variant 1, mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	BS69; MGC72621	BS69; MGC72621
Rattus norvegicus	RefSeq	GI_34875302	ILMN_295265	RGD1307537	NM_001013885.1	NM_001013885.1		291077	62078504	NM_001013885.1	RGD1307537	NP_001013907.1	ILMN_1651102	0001090576	S	553	CAGTCACTCCTTGTGGCCGGGAAAGTGCTGTCGTGGTGTTCAGAGATGCG	17	-	36277852-36277901	17p12	Rattus norvegicus similar to RIKEN cDNA 4933417A18 (RGD1307537), mRNA.					
Rattus norvegicus	RefSeq	GI_62718322-S	ILMN_53832	LOC296777	XM_216071.3	XM_216071.3		296777	62718322	XM_216071.3	LOC296777	XP_216071.3	ILMN_1357447	0001410551	S	780	CAAACATCCTGAACGAAAACAGCACTTGAGAGACAGCTTGGGGGACCGCC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC296777), mRNA.					
Rattus norvegicus	RefSeq	GI_62663144	ILMN_268683	RGD1564657_PREDICTED	XM_001065135.1	XM_001065135.1		306718	109505371	XM_001065135.1	RGD1564657_predicted	XP_001065135.1	ILMN_1650022	0004070114	S	358	AAAGATGGGTATGTGACTCCTGTGCGAAGACAGGGAGCATGTGGTGCATG				17p14	PREDICTED: Rattus norvegicus similar to cathepsin 1 precursor (predicted) (RGD1564657_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642962-S	ILMN_70013	LOC499535	XM_579978.1	XM_579978.1		499535	62642962	XM_579978.1	LOC499535	XP_579978.1	ILMN_1372793	0000610114	S	180	TGCTTCTGTGTAAGCGCGCATCCAGAGGCTCAGCGTTTCTGGTCCTGGGT				2q16	PREDICTED: Rattus norvegicus LOC499535 (LOC499535), mRNA.					
Rattus norvegicus	RefSeq	GI_62665714-S	ILMN_289166	SCUBE3_PREDICTED	XM_001078282.1	XM_001078282.1		294297	109509832	XM_001078282.1	Scube3_predicted	XP_001078282.1	ILMN_1359329	0001780113	S	3335	ATGAGCAGCTGGTGGAAGATATAGTGCGGGATGGCCGGCTGTACGCCTCT				20p12	PREDICTED: Rattus norvegicus signal peptide, CUB domain, EGF-like 3 (predicted) (Scube3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718131	ILMN_267776	LOC688625	XM_001067670.1	XM_001067670.1		688625	109513257	XM_001067670.1	LOC688625	XP_001067670.1	ILMN_1650067	0006840286	S	121	AGCTGAGAAGCACTTCCTTGGCTTTTTCACAGCCGTGTAGGCTGCATGCC	Un|NW_047874.1	+	672207-672215:683169-683209		PREDICTED: Rattus norvegicus hypothetical protein LOC688625 (LOC688625), mRNA.					
Rattus norvegicus	RefSeq	GI_8393398-S	ILMN_298960	GABRR1	NM_017291.1	NM_017291.1		29694	8393398	NM_017291.1	Gabrr1	NP_058987.1	ILMN_1373838	0006840373	S	3982	CTGGAAGAGACAAAGACCAGCCAAGCTGCCTAGAAGGGACAGTTCCAACC	5	+	49458332-49458381	5q21	Rattus norvegicus gamma-aminobutyric acid (GABA) receptor, rho 1 (Gabrr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence NAS]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Combining with gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to initiate a change in cell activity [goid 16917] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEP]		
Rattus norvegicus	RefSeq	GI_62649117-S	ILMN_293429	FRMD3_PREDICTED	XM_001059236.1	XM_001059236.1		298141	109476590	XM_001059236.1	Frmd3_predicted	XP_001059236.1	ILMN_1356676	0000940180	S	2007	GGACCTGCACATGGTGGACCCATCCAACACCAGTTCTCCACATTCCAACC				5q31	PREDICTED: Rattus norvegicus FERM domain containing 3 (predicted) (Frmd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424315-S	ILMN_290091	CAMK2G	NM_133605.1	NM_133605.1		171140	19424315	NM_133605.1	Camk2g	NP_598289.1	ILMN_1364240	0001990273	S	1676	TGACTCTGGAGGGCCTGAGTGACAGCCGCGGTCCTGTCCATTTGAGGTTT				15p16	Rattus norvegicus calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma (Camk2g), mRNA.	An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [pmid 11264466] [evidence TAS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655749-S	ILMN_69351	LOC360485	XM_346882.2	XM_346882.2		360485	62655749	XM_346882.2	LOC360485	XP_346883.1	ILMN_1353198	0001850441	S	481	CACTGGGACTTGTTGACTGCCGGTACCTTGAGCAGCAGGGGGAGATCCAT					PREDICTED: Rattus norvegicus hypothetical LOC360485 (LOC360485), mRNA.					
Rattus norvegicus	RefSeq	GI_62667546-S	ILMN_270146	HCFC1_PREDICTED	XM_001057067.1	XM_001057067.1		363519	109462325	XM_001057067.1	Hcfc1_predicted	XP_001057067.1	ILMN_1350267	0002030435	S	7237	CTGCCCGCAATGAAAAGGGCTACGGCCCTGCCACACAAGTGAGGTGGTTA				Xq37	PREDICTED: Rattus norvegicus host cell factor C1 (predicted) (Hcfc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577044-S	ILMN_287786	OLR297	NM_001000234.1	NM_001000234.1		293596	47577044	NM_001000234.1	Olr297	NP_001000234.1	ILMN_1364940	0005910504	S	794	CTGCTGGACTCCTGGACAAGGCAGTTGCTGTTCTGTACACCACTGTGACT	1	-	200325652-200325701	1q41	Rattus norvegicus olfactory receptor 297 (Olr297), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr297	Olr297
Rattus norvegicus	RefSeq	GI_62647763-S	ILMN_288856	COPG	NM_001031822.1	NM_001031822.1		297428	73532767	NM_001031822.1	Copg	NP_001026992.1	ILMN_1370587	0006200131	S	2310	GAACTTTGAAGCAGCCTGGGATGAGGTGGGAGATGAGTTTGAGAAGGAGG	4	+	122131907-122131956	4q34	Rattus norvegicus coatomer protein complex, subunit gamma (Copg), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state [goid 30126] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat [goid 48205] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_55741507-S	ILMN_302271	VEZT	NM_001006984.1	NM_001006984.1		299738	55741507	NM_001006984.1	Vezt	NP_001006985.1	ILMN_1359210	0004540348	S	2750	GAATGAGCCCTTTCTACTGTGTCCTTGCGGTGTGTAACTGCAGCGGTCAT	7	-	31096698-31096747	7q13	Rattus norvegicus vezatin, adherens junctions transmembrane protein (Vezt), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching [goid 43009] [evidence IEA]; The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching [goid 43009] [evidence ISS]		MGC94969	MGC94969
Rattus norvegicus	RefSeq	GI_62718703-S	ILMN_293831	LOC503397	XR_009201.1	XR_009201.1		503397	109515859	XR_009201.1	LOC503397		ILMN_1355342	0006130039	S	563	CAGGTCAATGTGTGCGGTTCACCAGAAGCAACGGGTCCAAAAAGATCGGC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC503397), mRNA.					
Rattus norvegicus	RefSeq	GI_62655971-S	ILMN_266187	LOC303057	XM_001067382.1	XM_001067382.1		303057	109490522	XM_001067382.1	LOC303057	XP_001067382.1	ILMN_1355193	0003290605	S	1504	TGATGCGACTGGAGAAGAGCCTGTGAAGAAACCGCAGACCCTCATGGAGC				10q21	PREDICTED: Rattus norvegicus similar to step II splicing factor SLU7; DNA segment, Chr 11, ERATO Doi 730, expressed; DNA segment, Chr 3, Brigham & Womens Genetics 0878 expressed, transcript variant 1 (LOC303057), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]; A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs [goid 30532] [evidence ISS]	The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition [goid 380] [evidence ISS]; Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome [goid 389] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Catalysis of the second transesterification reaction of spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure [goid 386] [evidence ISS]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with the pre-mRNA 3' splice site sequence [goid 30628] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651430-S	ILMN_274683	NUMB	NM_133287.1	NM_133287.1		29419	82524267	NM_133287.1	Numb	NP_579821.1	ILMN_1353560	0004920156	S	1684	GCTGCACTAGAAAGCAAGCCCAAGCAGCGCACCAACCCCTCTCCTACCAA				6q31	Rattus norvegicus numb gene homolog (Drosophila) (Numb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence NAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence NAS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978848-S	ILMN_289197	FNTA	NM_012847.1	NM_012847.1		25318	6978848	NM_012847.1	Fnta	NP_036979.1	ILMN_1351873	0005220619	S	1470	AGCATCTCCTGAAAGACATGGTGCACGGCTGTGTGCTGGGCGTGGCTAAG	16	+	70458221-70458270	16q12.4	Rattus norvegicus farnesyltransferase, CAAX box, alpha (Fnta), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The covalent attachment of a prenyl moiety to a protein amino acid [goid 18346] [evidence IEA]; The chemical reactions and pathways involving neurotransmitter receptors [goid 45213] [evidence ISS]; The chemical reactions and pathways involving neurotransmitter receptors [goid 45213] [evidence IEA]	Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate [goid 4660] [evidence IDA]; Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate [goid 4660] [evidence IEA]; Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families [goid 4662] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is changed [goid 30548] [evidence ISS]; Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is changed [goid 30548] [evidence IEA]	PFAS	PFAS
Rattus norvegicus	RefSeq	GI_62648127-S	ILMN_53565	LOC500312	XM_575663.2	XM_575663.2		500312	109472614	XM_575663.2	LOC500312	XP_575663.2	ILMN_1354383	0003060400	S	2408	CTTTTGTACCCGCTTACCTGAGCTCCAAAGGCAAAAACGTTGTGGCTGTG	4	+	160120009-160120058	4q42	PREDICTED: Rattus norvegicus similar to putative pheromone receptor V2R1b (LOC500312), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13786145-S	ILMN_269036	UGDH	NM_031325.1	NM_031325.1		83472	13786145	NM_031325.1	Ugdh	NP_112615.1	ILMN_1360736	0004060333	S	1972	TCGAAGCCGTGAAATCACTGTGCTAGGATGGCTGATGAAGGTCTCTGGAC	14	+	45570614-45570663	14p11	Rattus norvegicus UDP-glucose dehydrogenase (Ugdh), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: UDP-glucose + 2 NAD+ + H2O = UDP-glucuronate + 2 NADH + H+ [goid 3979] [evidence IDA]; Catalysis of the reaction: UDP-glucose + 2 NAD+ + H2O = UDP-glucuronate + 2 NADH + H+ [goid 3979] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660802-S	ILMN_297392	RGD1565273_PREDICTED	XR_007374.1	XR_007374.1		498413	109500997	XR_007374.1	RGD1565273_predicted		ILMN_1354437	0006980068	S	497	TTGCTCACCGCACCAGACCATGAGGAACACCAGCAAGGAGGTGCAGAGCA					PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565273_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577956-S	ILMN_279294	OLR1119	NM_001000988.1	NM_001000988.1		405346	47577956	NM_001000988.1	Olr1119	NP_001000988.1	ILMN_1371221	0002320133	S	339	TCTCCTTGGTGTGATGGCGTATGACCGCTATTTGGCCATATGTGATCCCC	8	-	16256718-16256767	8q12	Rattus norvegicus olfactory receptor 1119 (Olr1119), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1119	Olr1119
Rattus norvegicus	RefSeq	GI_62658805	ILMN_48301	SFRS8_PREDICTED	XM_222111.3	XM_222111.3		304431	62658805	XM_222111.3	Sfrs8_predicted	XP_222111.3	ILMN_1650597	0002060301	S	3168	AGGCTCTCACGGCTTCGGGCTGCTGGCTGTTCCTGTGTTGTTGGGATTCA				12q13	PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) (predicted) (Sfrs8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978716-S	ILMN_266096	CTRB1	NM_012536.1	NM_012536.1		24291	6978716	NM_012536.1	Ctrb1	NP_036668.1	ILMN_1368176	0005860204	S	465	CACCACTGGCTGGGGCAAGACCAAATACAATGCCCTCAAGACCCCTGAGA	19	-	41612014-41612032:41612937-41612967	19q12	Rattus norvegicus chymotrypsinogen B1 (Ctrb1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Ctrb1	Ctrb1
Rattus norvegicus	RefSeq	GI_62665974-S	ILMN_270118	NODAL_PREDICTED	XM_001055479.1	XM_001055479.1		294503	109510091	XM_001055479.1	Nodal_predicted	XP_001055479.1	ILMN_1351532	0002970632	S	734	GGCAACGCCGCCATCATTTGCCAGACAGAAGCCAACTATGTAGGAGGGTC				20q11	PREDICTED: Rattus norvegicus nodal homolog (mouse) (predicted) (Nodal_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27705937-S	ILMN_270118	NODAL_PREDICTED	XM_001055479.1	XM_001055479.1		294503	109510091	XM_001055479.1	Nodal_predicted	XP_001055479.1	ILMN_2039804	0002470376	S	843	GTACAATGCCTATCGCTGTGAGGGCGAGTGTCCTAACCCTGTGGGGGAGG				20q11	PREDICTED: Rattus norvegicus nodal homolog (mouse) (predicted) (Nodal_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653065-S	ILMN_55287	EPLIN	XM_217039.4	XM_217039.4		300228	109481311	XM_217039.4	eplin	XP_217039.4	ILMN_1352490	0006650390	S	2073	CGCCGAGGGGCAGGGACGGTCGTTCTTTTGAGCTGGAGAGTGAGAGTTTT	7	-	138519583-138519632	7q36	PREDICTED: Rattus norvegicus epithelial protein lost in neoplasm (eplin), mRNA.					
Rattus norvegicus	RefSeq	GI_34882512-S	ILMN_49510	LOC501333	XM_576744.2	XM_576744.2		501333	109513267	XM_576744.2	LOC501333	XP_576744.2	ILMN_1374642	0004760142	S	930	CAAACATCCTGAACGAAAACATCACTTGAGAGACAACTTGGGGGACCGCC	Un|NW_047874.1	-	867631-867666:867790-867803		PREDICTED: Rattus norvegicus hypothetical LOC501333 (LOC501333), mRNA.					
Rattus norvegicus	RefSeq	GI_57977272-S	ILMN_265254	PFKP	NM_206847.1	NM_206847.1		60416	57977272	NM_206847.1	Pfkp	NP_996729.1	ILMN_1350318	0005670097	S	2337	GTAGGCAAGCTGGAGCCGGTGCATAACCACGGAGAACTATCAGCCATCTG	17	+	74822698-74822747	17q12.2	Rattus norvegicus phosphofructokinase, platelet (Pfkp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	PFK-C; MGC105718	PFK-C; MGC105718
Rattus norvegicus	RefSeq	GI_62662396-S	ILMN_49465	LOC498603	XM_579837.1	XM_579837.1		498603	62662396	XM_579837.1	LOC498603	XP_579837.1	ILMN_1359501	0005890725	S	115	TACGCGGCTATGGCAGGGAGGGACCGGGAGAAATGGGTGCTGCTTCTACA					PREDICTED: Rattus norvegicus LOC498603 (LOC498603), mRNA.					
Rattus norvegicus	RefSeq	GI_62651298-S	ILMN_298545	CDCA4	NM_001037214.1	NM_001037214.1		500727	81295392	NM_001037214.1	Cdca4	NP_001032291.1	ILMN_1355961	0006370368	S	1948	AGACTGCAGGGTGCCGGGCATGTGTGTGCTTAGAAAGGGTGTGCAGCCCA	6	-	137819138-137819187	6q32	Rattus norvegicus cell division cycle associated 4 (Cdca4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]		MGC124732	MGC124732
Rattus norvegicus	RefSeq	GI_62647739-S	ILMN_273606	RGD1310925_PREDICTED	XM_001074745.1	XM_001074745.1		362392	109473857	XM_001074745.1	RGD1310925_predicted	XP_001074745.1	ILMN_1374736	0005290152	S	395	GGTAGACGGCTCTGTAAATGCCTATGCCATCAACGTGTCTCAGAAGAGGA				4q34	PREDICTED: Rattus norvegicus similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted) (RGD1310925_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654358-S	ILMN_53143	LOC316012	XM_236647.3	XM_236647.3		316012	62654358	XM_236647.3	LOC316012	XP_236647.3	ILMN_1369639	0002060066	S	3651	GCCACAGAGTCACAAGGAAGGACTTTTGGTCCAGCGACTCAAGAGCTGGG				8q32	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC316012), mRNA.					
Rattus norvegicus	RefSeq	GI_62662995-S	ILMN_64306	RGD1559498_PREDICTED	XM_573950.2	XM_573950.2		498667	109503615	XM_573950.2	RGD1559498_predicted	XP_573950.2	ILMN_1352634	0000770368	S	1153	CATCGAGGCTTACCAGGACTACGACCACCACGCTCAGGAGAAGTACGAAG	16	+	85101684-85101733	16q12.5	PREDICTED: Rattus norvegicus similar to expressed sequence AW121567 (predicted) (RGD1559498_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981075-S	ILMN_266052	IDE	NM_013159.1	NM_013159.1		25700	6981075	NM_013159.1	Ide	NP_037291.1	ILMN_1363792	0004730731	S	4188	GCGTGGCTATGCTCCCACACACAGGCAATAGTAACAGAAAGTGCTCCTGT	1	-	241547907-241547956	1q53	Rattus norvegicus insulin degrading enzyme (Ide), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; A proteasome complex found in the cytosol of a cell [goid 31597] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42447] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 43171] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 44257] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IDA]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence IMP]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence IMP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence TAS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IPI]; Interacting selectively with beta-endorphin, a peptide generated by the cleavage of pro-opiomelanocortin [goid 31626] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	INSDEGM	INSDEGM
Rattus norvegicus	RefSeq	GI_6981301-S	ILMN_291201	ODC1	NM_012615.1	NM_012615.1		24609	6981301	NM_012615.1	Odc1	NP_036747.1	ILMN_1369735	0006510204	S	2194	CAGGCTGTGTGTTACAGCAGTGAGTCTAGCCCAGCAGAGATGTGGATGAT	6	+	41315584-41315633	6q16	Rattus norvegicus ornithine decarboxylase 1 (Odc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups [goid 6595] [evidence IDA]; The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups [goid 6596] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine [goid 9446] [evidence IDA]	Catalysis of the reaction: L-ornithine = putrescine + CO2 [goid 4586] [evidence IDA]; Catalysis of the reaction: L-ornithine = putrescine + CO2 [goid 4586] [evidence ISS]; Catalysis of the reaction: L-ornithine = putrescine + CO2 [goid 4586] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	RNODC; Odc	RNODC; Odc
Rattus norvegicus	RefSeq	GI_62662205-S	ILMN_295363	OGDHL_PREDICTED	XM_001061630.1	XM_001061630.1		290566	109503798	XM_001061630.1	Ogdhl_predicted	XP_001061630.1	ILMN_1357558	0002100446	S	2898	TGAGCGCGTAGAGCGGCTCATCTTCTGCACAGGGAAGGTGTACTACGACC				16p16	PREDICTED: Rattus norvegicus oxoglutarate dehydrogenase-like (predicted) (Ogdhl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27692336-S	ILMN_283402	RPTN_PREDICTED	XM_227371.1	XM_227371.1		295190	27692336	XM_227371.1	Rptn_predicted	XP_227371.1	ILMN_1364772	0005570064	S	3289	ACAGCTAACACCTCCAGCCCTTTCTATGACTATGTCCAAGAGCAGGCAGC	2	+	186487048-186487097	2q34	PREDICTED: Rattus norvegicus repetin (predicted) (Rptn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543922-S	ILMN_302952	UGT2B5	NM_153314.2	NM_153314.2		266685	31543922	NM_153314.2	Ugt2b5	NP_695226.2	ILMN_1358017	0002470364	S	1521	TCCTGCTCACCTGTTCGGCAGTCATTGCAGTCCTTACTGTAAAATGCTTC	14	+	22366563-22366612	14p21	Rattus norvegicus UDP glucuronosyltransferase 2 family, polypeptide B5 (Ugt2b5), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]	Udpgtr-3; Udpgt; Rlug38	Udpgtr-3; Udpgt; Rlug38
Rattus norvegicus	RefSeq	GI_62717768-S	ILMN_69499	LOC367501	XM_346175.2	XM_346175.2		367501	62717768	XM_346175.2	LOC367501	XP_346176.2	ILMN_1371844	0003850204	S	388	GATGTCCCTCAGTATCAGCAGGATGGGGCGTGGAGAGTTCTGGCATCCTC					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC367501), mRNA.					
Rattus norvegicus	RefSeq	GI_9507050-S	ILMN_300802	RGS9	NM_019224.1	NM_019224.1		29481	9507050	NM_019224.1	Rgs9	NP_062097.1	ILMN_2040239	0006940010	S	2290	TGGGCGTGTGCTCTGGTTGACTCCCAACGGCCACCTTTTCCCTTTCACTG				10q32.1	Rattus norvegicus regulator of G-protein signaling 9 (Rgs9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IMP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]; Any process that activates or increases the activity of a GTPase [goid 43547] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664794-S	ILMN_62090	LOC307636	XM_226231.3	XM_226231.3		307636	62664794	XM_226231.3	LOC307636	XP_226231.3	ILMN_1350198	0006760619	S	220	CTTCACACGCAGAACCATCACGGAAGCAGTTGGCATTTCGGAAGACTGAC				19p13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L26 (LOC307636), mRNA.					
Rattus norvegicus	RefSeq	GI_62647987-S	ILMN_69773	LOC497797	XM_579680.1	XM_579680.1		497797	62647987	XM_579680.1	LOC497797	XP_579680.1	ILMN_1358851	0001690398	S	994	TATCCTGCCCCATTGTGCAGTGTGAACGAAAGGTCACAGTCTGCTCTGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_152848 (LOC497797), mRNA.					
Rattus norvegicus	RefSeq	GI_62644277-S	ILMN_67836	LOC310839	XM_227658.3	XM_227658.3		310839	62644277	XM_227658.3	LOC310839	XP_227658.3	ILMN_1355243	0006590019	S	4347	GCTGACGTGTGCTTCCATAGCGGGCAAGTTCCTTCATGTGGAGTAGTGCG				2q42	PREDICTED: Rattus norvegicus similar to dJ1033H22.1 (KIAA0554 protein) (predicted) (LOC310839), mRNA.					
Rattus norvegicus	RefSeq	GI_20302098-S	ILMN_301707	EAR11	NM_138902.1	NM_138902.1		192264	20302098	NM_138902.1	Ear11	NP_620257.1	ILMN_1363762	0006110215	S	533	TCCGGTGCCAGCACTTTGTACCTGAGCTCATCGGCTCCTGCCAAGATCAC	15|NW_047465.1	+	31222-31271		Rattus norvegicus eosinophil-associated, ribonuclease A family, member 11 (Ear11), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	R1; R7; EAR; ECP	R1; R7; EAR; ECP
Rattus norvegicus	RefSeq	GI_62665787-S	ILMN_66075	UBASH3A_PREDICTED	XM_228060.4	XM_228060.4		309666	109509236	XM_228060.4	Ubash3a_predicted	XP_228060.4	ILMN_1358733	0006290129	S	2378	TGTTGCCTGGACACAGAGCTGGAGGCAGAGTGATGCTCAAAAGCGGTGCA	20	+	9620175-9620224	20p12	PREDICTED: Rattus norvegicus ubiquitin associated and SH3 domain containing, A (predicted) (Ubash3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56676349-S	ILMN_299704	PRSS35	NM_001008560.1	NM_001008560.1		315866	56676349	NM_001008560.1	Prss35	NP_001008560.1	ILMN_1348864	0005270427	S	2792	CTCACTCAATCCATTGGCAGGGCGAAACCTTTTTCTGTTAGGCGTGTCCT	8	+	92025223-92025272	8q31	Rattus norvegicus protease, serine, 35 (Prss35), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_38454233-S	ILMN_284684	COL27A1	NM_198747.1	NM_198747.1		298101	38454233	NM_198747.1	Col27a1	NP_942042.1	ILMN_1375001	0006590358	S	5250	CAGCTCTGAGGGGACACAGCACATCACAATCCACTGCCTGAACATGACGG	5	+	80314667-80314716	5q24	Rattus norvegicus collagen, type XXVII, alpha 1 (Col27a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648158-S	ILMN_266135	RGD1562580_PREDICTED	XM_001063300.1	XM_001063300.1		500317	109474227	XM_001063300.1	RGD1562580_predicted	XP_001063300.1	ILMN_1370299	0001410452	S	1392	CTACTTCAACCTGCCAATCTGGGTACACGCACGGACAACGGCCCCCAAGA				4q42	PREDICTED: Rattus norvegicus similar to Probable G-protein coupled receptor 92 (predicted) (RGD1562580_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662962-S	ILMN_59742	TUBGCP3	XM_225013.4	XM_225013.4		306599	109503555	XM_225013.4	Tubgcp3	XP_225013.2	ILMN_1363010	0007050112	S	3345	TCACATTTCAAAGAGCGGGAGCCATGTGGAGGGAGGTTTCCTCGGCTCGC	16	+	81769356-81769405	16q12.5	PREDICTED: Rattus norvegicus tubulin, gamma complex associated protein 3 (Tubgcp3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence IEA]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence ISS]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence IEA]; Any of the spindle microtubules that come from each pole and overlap at the spindle midzone. This interdigitating structure consisting of antiparallel microtubules is responsible for pushing the poles of the spindle apart [goid 5827] [evidence IEA]; Any of the spindle microtubules that come from each pole and overlap at the spindle midzone. This interdigitating structure consisting of antiparallel microtubules is responsible for pushing the poles of the spindle apart [goid 5827] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence IEA]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34879096-S	ILMN_288310	LOC686087	XM_001066482.1	XM_001066482.1		686087	109500015	XM_001066482.1	LOC686087	XP_001066482.1	ILMN_1352231	0004230035	S	34	GCTGCTTTCCGAGGAGCCAGTGTTGCTGAGATTGCCAAAATGCTTTGGAG	14	-	88227182-88227231	14q21	PREDICTED: Rattus norvegicus similar to motile sperm domain containing 1 (LOC686087), mRNA.					
Rattus norvegicus	RefSeq	GI_62648799-S	ILMN_272493	DDX58_PREDICTED	XM_001067411.1	XM_001067411.1		297989	109476354	XM_001067411.1	Ddx58_predicted	XP_001067411.1	ILMN_1358658	0006180072	S	2433	CAGGGACAGTCAACACAAACCACAGCCCGTCCCCGACAGAGAAAACAAGA				5q22	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 (predicted) (Ddx58_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641881-S	ILMN_292924	MS4A10_PREDICTED	XM_001074991.1	XM_001074991.1		293739	109463564	XM_001074991.1	Ms4a10_predicted	XP_001074991.1	ILMN_1358054	0004570020	S	798	GCCGCCTCCCATCGGCTGGAGTCTGATGATGACACAGGCGTGACTCAATA				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 10 (predicted) (Ms4a10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661112-S	ILMN_59737	LOC498450	XM_573709.1	XM_573709.1		498450	62661112	XM_573709.1	LOC498450	XP_573709.1	ILMN_1367907	0000130041	S	36	GCCAGGACAAGAGAGAGCTGAACAGGCAGTGGGGGACTCTGTGCTTTGCT				15p16	PREDICTED: Rattus norvegicus similar to Hmgb1 protein (LOC498450), mRNA.					
Rattus norvegicus	RefSeq	GI_6981067-S	ILMN_270961	ICAM1	NM_012967.1	NM_012967.1		25464	6981067	NM_012967.1	Icam1	NP_037099.1	ILMN_1354506	0003520097	S	2462	CATGCCTCCACCCGGCTCCACCTCAAAGAGAATGCCTGGGAGAAAATGTT	8	+	20051799-20051848	8q13	Rattus norvegicus intercellular adhesion molecule 1 (Icam1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which a T cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 2457] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IDA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere [goid 22614] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits [goid 33627] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence IMP]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence TAS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP]	Interacting selectively with an integrin [goid 5178] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	ICAM; CD54	ICAM; CD54
Rattus norvegicus	RefSeq	GI_62650591-S	ILMN_67329	RGD1307943_PREDICTED	XM_343049.3	XM_343049.3		362727	109478127	XM_343049.3	RGD1307943_predicted	XP_343050.1	ILMN_1368375	0002640239	S	284	ACCTGGGCCTGTACACTGAAGATGAAGTTTTGGGTGACGATGGACATGCG	6	+	51744707-51744756	6q16	PREDICTED: Rattus norvegicus LOC362727 (predicted) (RGD1307943_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393943-S	ILMN_292085	PENK1	NM_017139.1	NM_017139.1		29237	8393943	NM_017139.1	Penk1	NP_058835.1	ILMN_1352410	0001660433	S	1114	TACGGAGGCTTTATGCGGTTTTGAAGCCCTTCCCAGCAGTGATCCCGGGC	5	-	17509609-17509634:17509635-17509658	5q12	Rattus norvegicus proenkephalin 1 (Penk1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IMP]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IMP]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]	Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect [goid 1515] [evidence IEA]; Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect [goid 1515] [evidence IEA]	Penk-rs; Penk2; MGC93514; Penk; Enk	Penk-rs; Penk2; MGC93514; Penk; Enk
Rattus norvegicus	RefSeq	GI_62641780-S	ILMN_279565	ZNHIT2_PREDICTED	XM_001071296.1	XM_001071296.1		309177	109463404	XM_001071296.1	Znhit2_predicted	XP_001071296.1	ILMN_1349025	0005910441	S	1147	GTTGAGGAGATGGCAACCCTTACTGGGGAGCTAGAACGGCTTTGGGGAGG				1q43	PREDICTED: Rattus norvegicus zinc finger, HIT domain containing 2 (predicted) (Znhit2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655418-S	ILMN_267263	DTYMK_PREDICTED	XM_001071259.1	XM_001071259.1		301622	109487532	XM_001071259.1	Dtymk_predicted	XP_001071259.1	ILMN_1349285	0006380113	S	826	GGAGAGCGTAGAAGGCTCGCATCTCAACACTGTTCCGCAGGAGCTAGTTC				9q36	PREDICTED: Rattus norvegicus deoxythymidylate kinase (predicted) (Dtymk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591972-S	ILMN_293623	ITPKA	NM_031045.1	NM_031045.1		81677	13591972	NM_031045.1	Itpka	NP_112307.1	ILMN_1362581	0003390692	S	1645	GGAAGGAAACAGTGGGCTTCTCCCCCAGCCTTGTCAAGTGACTTTGCACC	3	+	106266002-106266051	3q35	Rattus norvegicus inositol 1,4,5-trisphosphate 3-kinase A (Itpka), mRNA.		The chemical reactions and pathways involving inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms [goid 6020] [evidence IEA]; The chemical reactions and pathways involving inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms [goid 6020] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IDA]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IMP]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718358-S	ILMN_55450	LOC501378	XM_576791.1	XM_576791.1		501378	62718358	XM_576791.1	LOC501378	XP_576791.1	ILMN_1359882	0002030750	S	812	CCCCCATGCATTGGGCTTTCATGGATAGTTGTAGATCCATGCTCTTTCTC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501378), mRNA.					
Rattus norvegicus	RefSeq	GI_62651572-S	ILMN_47926	LOC500752	XM_576130.1	XM_576130.1		500752	62651572	XM_576130.1	LOC500752	XP_576130.1	ILMN_1354924	0002760288	S	574	CCTAAGGATAATAGGTATAGAAGAGAGTGAACACTCCCAGCTCAAAGGAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500752), mRNA.					
Rattus norvegicus	RefSeq	GI_19424251-S	ILMN_54218	ADAP1	NM_133567.2	NM_133567.2		171097	76496483	NM_133567.2	Adap1	NP_598251.1	ILMN_1374854	0005290390	S	1181	GTGGAAGCCCACTTCAAGCATAAACCCTAAGGAAGAGAGCCCGGAGGCCC	12	+	15876464-15876491:15876492-15876513	12q11	Rattus norvegicus ArfGAP with dual PH domains 1 (Adap1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence ISS]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phosphatidylinositol-3,4,5-triphosphate, the triphosphorylated derivative of phosphatidylinositol [goid 5547] [evidence IDA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	p42IP4	p42IP4
Rattus norvegicus	RefSeq	GI_62645447-S	ILMN_273598	RGD1562391_PREDICTED	XR_009283.1	XR_009283.1		366137	109470379	XR_009283.1	RGD1562391_predicted		ILMN_1369457	0006550066	S	191	ACTGGTGGAGTCGGTAGGTGCACCCAGTCCAAACTAGACACAGGGACGGT				3q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (predicted) (RGD1562391_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34857406-S	ILMN_273598	RGD1562391_PREDICTED	XR_009283.1	XR_009283.1		366137	109470379	XR_009283.1	RGD1562391_predicted		ILMN_2039848	0002600484	S	334	CAGGTGAACACAGCACCTAAGATGCGCCAATGGACCTACAGAGCTCAGGC				3q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (predicted) (RGD1562391_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664393-S	ILMN_48823	LOC498860	XM_574146.1	XM_574146.1		498860	62664393	XM_574146.1	LOC498860	XP_574146.1	ILMN_1353610	0002850279	S	2451	GCCCAAGATGGAGTTACCTATGACACCAAGATGGATGACAAGTGTGGGAC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498860), mRNA.					
Rattus norvegicus	RefSeq	GI_62641053	ILMN_263406	LOC685579	XM_001064405.1	XM_001064405.1		685579	109459157	XM_001064405.1	LOC685579	XP_001064405.1	ILMN_1651155	0004120347	S	501	GAGACAGCTGCCACCTTGACTACGAAGCACCCTGACTATGCCATCCTGGC	1	+	159935048-159935097	1q32	PREDICTED: Rattus norvegicus similar to ribonucleotide reductase M1 (LOC685579), mRNA.	An enzyme complex composed of 2-4 or more subunits, which usually contains nonheme iron and requires ATP for catalysis. Catalyzes the formation of 2'-deoxyribonucleoside diphosphate and thioredoxin disulfide from ribonucleoside diphosphate and thioredoxin [goid 5971] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin [goid 4748] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663787-S	ILMN_265284	AKR1CL1_PREDICTED	XM_001062861.1	XM_001062861.1		361267	109506059	XM_001062861.1	Akr1cl1_predicted	XP_001062861.1	ILMN_1369274	0003840463	S	830	ACCAACTGCAGAGGGGGGTGGTGGTTCTGGCCAAGAGCTTCAATGAGAAG				17q12.3	PREDICTED: Rattus norvegicus aldo-keto reductase family 1, member C-like 1 (predicted) (Akr1cl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717830	ILMN_298213	CESL1	NM_001024365.1	NM_001024365.1		501232	66730526	NM_001024365.1	Cesl1	NP_001019536.1	ILMN_1650982	0005550040	S	1782	GACAACCTCAGCCCCACCACAATGAGCTGTGAATGCAAGTCTCTGTCAGC	Un|NW_047844.1	+	132903-132952		Rattus norvegicus carboxylesterase-like 1 (Cesl1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]		Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661693-S	ILMN_56239	LOC361066	XM_341349.2	XM_341349.2		361066	62661693	XM_341349.2	LOC361066	XP_341350.2	ILMN_1357154	0005050372	S	1666	CCTCATACCGGAGACAGCAGCCCTAGGACCAAGAACAACACTGCCTTGGG				15p11	PREDICTED: Rattus norvegicus similar to 9930012K11Rik protein (predicted) (LOC361066), mRNA.					
Rattus norvegicus	RefSeq	GI_62651088-S	ILMN_69338	ANGEL1_PREDICTED	XM_343091.3	XM_343091.3		362765	109478540	XM_343091.3	Angel1_predicted	XP_343092.3	ILMN_1367240	0006770592	S	3599	CCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGAGGCCCAG	6	-	110825150-110825199	6q31	PREDICTED: Rattus norvegicus angel homolog 1 (Drosophila) (predicted) (Angel1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42409518-S	ILMN_270558	KRT19	NM_199498.1	NM_199498.1		360626	42409518	NM_199498.1	Krt19	NP_955792.1	ILMN_1373199	0002810332	S	1105	TGAAGTCCAGCTGAGTAACGTGCGTGCTGACACAGAGCGCCAGAACCAGG	10	-	89081178-89081227	10q32.1	Rattus norvegicus keratin 19 (Krt19), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix [goid 43034] [evidence IEA]; Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix [goid 43034] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence IEA]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]	MGC124534; Krt19; Ka19; MGC156553	MGC124534; Krt19; Ka19; MGC156553
Rattus norvegicus	RefSeq	GI_62657382-S	ILMN_61000	LOC498027	XM_573228.1	XM_573228.1		498027	62657382	XM_573228.1	LOC498027	XP_573228.1	ILMN_1369875	0002320446	S	859	GGCACAAGACGGTAAGAGGGCGGCCAAAGTTATCCAGGAAGTGGTATAGG					PREDICTED: Rattus norvegicus similar to Phosphatidylserine receptor (predicted) (LOC498027), mRNA.					
Rattus norvegicus	RefSeq	GI_50845390-S	ILMN_294785	LY6G5B	NM_001001934.1	NM_001001934.1		406867	50845390	NM_001001934.1	Ly6g5b	NP_001001934.1	ILMN_1370855	0006660707	S	284	GGGTTAATTGCTGCCAGTATGATTACTGCAACTCCTGGTCCAGTGCCCAG	20	+	3770453-3770502	20p12	Rattus norvegicus lymphocyte antigen 6 complex, locus G5B (Ly6g5b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_51948511-S	ILMN_266585	RGD1303271	NM_001004268.1	NM_001004268.1		313018	51948511	NM_001004268.1	RGD1303271	NP_001004268.1	ILMN_1351814	0007000546	S	1453	CAGCTGGACTGACTGCTGGCTGGGCCTGTTTCTTCTGTGGCCTGAAAGCA	5	-	151552355-151552404	5q36	Rattus norvegicus similar to chromosome 1 open reading frame 172 (RGD1303271), mRNA.				MGC94165	MGC94165
Rattus norvegicus	RefSeq	GI_62667136-S	ILMN_68494	LOC317203	XM_228473.3	XM_228473.3		317203	62667136	XM_228473.3	LOC317203	XP_228473.3	ILMN_1374028	0006770632	S	2156	CAGCCAACCTCAGATGACCCGCCACAGGTTGTTATGGAAGCAGTGGCTGC				Xq31	PREDICTED: Rattus norvegicus similar to ribosomal protein S6 kinase polypeptide 6 (LOC317203), mRNA.					
Rattus norvegicus	RefSeq	GI_62649178-S	ILMN_61340	LOC362540	XM_342860.2	XM_342860.2		362540	62649178	XM_342860.2	LOC362540	XP_342861.1	ILMN_1373650	0007040300	S	849	GGCGCCATGTTCCGAAGCTACTGGGCTTTGAGAAAAGAATTCCCAACAGG				5q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933428I03 (predicted) (LOC362540), mRNA.					
Rattus norvegicus	RefSeq	GI_51556266-S	ILMN_285609	CNTFR	NM_001003929.1	NM_001003929.1		313173	51556266	NM_001003929.1	Cntfr	NP_001003929.1	ILMN_1372239	0006400497	S	968	TGCTCACGCCACACCCTGGACTGAGGAACCACGGCATCTCACCACTGAAG	5|NW_047735.1	+	299421-299470		Rattus norvegicus ciliary neurotrophic factor receptor (Cntfr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA];  [goid 4897] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence IPI]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666853-S	ILMN_52664	LOC302697	XM_217622.3	XM_217622.3		302697	62666853	XM_217622.3	LOC302697	XP_217622.1	ILMN_1374801	0006400129	S	3329	GAGACAGAATCTCAGGCTGGAGAGATAGCTCAGTGGTTAAGAGCACTAGC				Xq21	PREDICTED: Rattus norvegicus similar to eukaryotic translation initiation factor 1A, Y-linked (LOC302697), mRNA.					
Rattus norvegicus	RefSeq	GI_62663768-S	ILMN_67616	LOC498788	XM_574073.1	XM_574073.1		498788	62663768	XM_574073.1	LOC498788	XP_574073.1	ILMN_1373905	0005910484	S	1077	GGCAAAGTTTAGAGCAGAGACTGAAGCAAAGGCCATTCTGAGCCTGTCCC					PREDICTED: Rattus norvegicus similar to LRRG00130 (LOC498788), mRNA.					
Rattus norvegicus	RefSeq	GI_7709991-S	ILMN_299639	BSG	NM_012783.2	NM_012783.2		25246	78126180	NM_012783.2	Bsg	NP_036915.1	ILMN_1357736	0003440279	S	1103	CTGAAGTATGTCACTACAGCCCTGTGGAGTGGGGGAGTGGGGTCATGAGG	7	-	11508001-11508050	7q11	Rattus norvegicus basigin (Bsg), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEP]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IEP]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IEA]	basignin; 5A11; EMMPRIN; HT7; CE9; Ox47R	basignin; 5A11; EMMPRIN; HT7; CE9; Ox47R
Rattus norvegicus	RefSeq	GI_62638199	ILMN_271545	RAET1L	NM_001013063.1	NM_001013063.1		292461	61556837	NM_001013063.1	Raet1l	NP_001013081.1	ILMN_1651090	0004230138	S	1147	TGGGAGCTGAACCGAGGACATCTCCAAGAACAGCAAGGGATCTTAACTAC	1	-	2150856-2150896:2150897-2150905	1p13	Rattus norvegicus retinoic acid early transcript 1L (Raet1l), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_9506758	ILMN_55338	BET1L	NM_019368.1	NM_019368.1		54400	9506758	NM_019368.1	Bet1l	NP_062241.1	ILMN_1650490	0005080711	S	392	TCTCCTACCTCTTTTCGAGGACAAGGACGTGAGCCAGTGGGAGCCAAGGG				1q41	Rattus norvegicus blocked early in transport 1 homolog (S. cerevisiae) like (Bet1l), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IDA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence ISS]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence ISS]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence ISS]	Gs15; Bet1	Gs15; Bet1
Rattus norvegicus	RefSeq	GI_62654833-S	ILMN_54371	RGD1561330_PREDICTED	XM_237047.4	XM_237047.4		316318	109485923	XM_237047.4	RGD1561330_predicted	XP_237047.4	ILMN_1353718	0006220037	S	878	CAATATCCAGCCCCAGTGTCTTCGCTAGGGTCTCCTACTTTGACAAGTGG	9	-	33298235-33298284	9q21	PREDICTED: Rattus norvegicus similar to TESP2 (predicted) (RGD1561330_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640806-S	ILMN_55166	LOC293057	XM_214982.3	XM_214982.3		293057	62640806	XM_214982.3	LOC293057	XP_214982.3	ILMN_1363033	0005340008	S	1484	GGCCCTCACCCCGTGGCCTGTAGGAAGGCTCTGCTATTGTTCAAACCCAT				1q31	PREDICTED: Rattus norvegicus similar to junction-mediating and regulatory protein (LOC293057), mRNA.					
Rattus norvegicus	RefSeq	GI_30348969-S	ILMN_64860	EGLN1	NM_178334.2	NM_178334.2		308913	76781449	NM_178334.2	Egln1	NP_848017.1	ILMN_1372484	0001230050	S	533	GCCACTGCAGCGGGAAGCTGGGCAACTACAGGATAAACGGCCGAACGAAA	19	-	55086515-55086515:55117645-55117693	19q12	Rattus norvegicus EGL nine homolog 1 (C. elegans) (Egln1), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; A homeostatic process involved in the maintenance of an internal equilibrium of oxygen within an organism or cell [goid 32364] [evidence IEA]; A homeostatic process involved in the maintenance of an internal equilibrium of oxygen within an organism or cell [goid 32364] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	PHD-2	PHD-2
Rattus norvegicus	RefSeq	GI_12621097-S	ILMN_297655	EPHX2	NM_022936.1	NM_022936.1		65030	12621097	NM_022936.1	Ephx2	NP_075225.1	ILMN_1359107	0006770563	S	1747	GGACGTGGCCTTATCCACAGCCAGCAGCATCGTTCTTTTGCCAGCAGTGA	15	-	45497755-45497804	15p12	Rattus norvegicus epoxide hydrolase 2, cytoplasmic (Ephx2), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence TAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The synthesis or release of any prostaglandin following a stimulus during an acute inflammatory response, resulting in an increase in its intracellular or extracellular levels [goid 2539] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; The chemical reactions and pathways involving linoleic acid, an unsaturated omega-6 fatty acid that has the molecular formula C18H32O2 [goid 43651] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IMP]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IMP]; Catalysis of the reaction: 4-nitrophenyl phosphate + H2O = 4-nitrophenol + phosphate [goid 3869] [evidence IDA]; Catalysis of the reaction: an epoxide + H2O = a glycol [goid 4301] [evidence IEA]; Catalysis of the reaction: an epoxide + H2O = a glycol [goid 4301] [evidence IDA]; Catalysis of the reaction: an epoxide + H2O = a glycol [goid 4301] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659263-S	ILMN_266351	R3HDM1	XM_001055266.1	XM_001055266.1		304763	109498561	XM_001055266.1	R3hdm1	XP_001055266.1	ILMN_1360478	0005360458	S	4286	AACCATGTCAAAACTATCCTCTGGGGGGCTCTGAGGGTGCTAAGGAGACC				13q12	PREDICTED: Rattus norvegicus R3H domain containing 1, transcript variant 3 (R3hdm1), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577692-S	ILMN_269423	OLR637	NM_001001126.1	NM_001001126.1		406053	47577692	NM_001001126.1	Olr637	NP_001001126.1	ILMN_1372666	0001980176	S	665	CTCTGAGAAACCACAGCGCAGAAGGAAGACGAAAGGCCTTGTCTACATGC	3	+	72474452-72474501	3q24	Rattus norvegicus olfactory receptor 637 (Olr637), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr637	Olr637
Rattus norvegicus	RefSeq	GI_62640722	ILMN_51232	LOC499182	XM_574475.1	XM_574475.1		499182	62640722	XM_574475.1	LOC499182	XP_574475.1	ILMN_1651138	0007100484	S	358	GCGAGAGGCAAGCGCAGGAACACAAGCAACAGAAACCAAGACTACTAGGA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499182), mRNA.					
Rattus norvegicus	RefSeq	GI_9506598-S	ILMN_299959	FGF2	NM_019305.1	NM_019305.1		54250	9506598	NM_019305.1	Fgf2	NP_062178.1	ILMN_1350498	0006860408	S	915	GAACTGGGCAGTATAAACTCGGATCCAAAACGGGGCCTGGACAGAAGGCC	2	+	123947035-123947084	2q25	Rattus norvegicus fibroblast growth factor 2 (Fgf2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; The directed movement of a MAP kinase to the nucleus upon activation [goid 189] [evidence IDA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis [goid 17158] [evidence IDA]; The process that activates or increases the rate or extent of granule cell precursor proliferation [goid 21940] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IDA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]; Any process that modulates the frequency, rate or extent of programmed cell death that occurs in the retina [goid 46668] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence ISS]	Interacting selectively with the nerve growth factor receptor [goid 5163] [evidence TAS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Fgf-2; bFGF	Fgf-2; bFGF
Rattus norvegicus	RefSeq	GI_62666274-S	ILMN_66549	ZBTB24_PREDICTED	XM_345114.3	XM_345114.3		365590	109509621	XM_345114.3	Zbtb24_predicted	XP_345115.3	ILMN_1365313	0002940204	S	1444	AGTGGAGATGAAGATGACCAGAGCACAGCCAAGAGGGCGACGTGTGGGAG	20	+	45411066-45411115	20q12	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 24 (predicted) (Zbtb24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654744-S	ILMN_50284	LOC501106	XM_576521.1	XM_576521.1		501106	62654744	XM_576521.1	LOC501106	XP_576521.1	ILMN_1374111	0002850136	S	2613	TCAAGGGCAGCAGAGAAGCAGAACGAATGCCAACCAGAGTCGGCCCATCC				9q12	PREDICTED: Rattus norvegicus similar to G-protein coupled receptor 115 (LOC501106), mRNA.					
Rattus norvegicus	RefSeq	GI_62646473-S	ILMN_64441	CTCFL_PREDICTED	XM_230900.3	XM_230900.3		296420	62646473	XM_230900.3	Ctcfl_predicted	XP_230900.3	ILMN_1350775	0004280348	S	3495	GACCCAGAGCATGAGAAGTCAGCCCCCTCCAGAAATGGAAGACCAGTGAC					PREDICTED: Rattus norvegicus CCCTC-binding factor (zinc finger protein)-like (predicted) (Ctcfl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654395-S	ILMN_54822	STAC_PREDICTED	XM_343491.3	XM_343491.3		363152	109484015	XM_343491.3	Stac_predicted	XP_343492.3	ILMN_1370819	0004060332	S	1668	GGAAGAACGGGACGGCTTCATCAGAGTCCTCAGTGGGAAGAAGAGAGGCC	8	-	115962003-115962052	8q32	PREDICTED: Rattus norvegicus src homology three (SH3) and cysteine rich domain (predicted) (Stac_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667146-S	ILMN_69028	LOC302328	XM_228452.3	XM_228452.3		302328	62667146	XM_228452.3	LOC302328	XP_228452.3	ILMN_1370430	0005390301	S	3715	CCATGTAGTTACTCAATGCAAATTCTGGTGGCCTCAGGTGAAGATGTCTG				Xq32	PREDICTED: Rattus norvegicus similar to premature ovarian failure 1B (LOC302328), mRNA.					
Rattus norvegicus	RefSeq	GI_62667626-S	ILMN_289823	LOC501670	XM_577067.1	XM_577067.1		501670	62667626	XM_577067.1	LOC501670	XP_577067.1	ILMN_1353554	0002230044	S	472	CCTGTCAGTGGAAGGGTGCCAGATCCCAAGGCAGTGGCAGGTGATATTGT	X|NW_048066.1	+	47427-47466:55654-55663		PREDICTED: Rattus norvegicus hypothetical LOC501670 (LOC501670), mRNA.					
Rattus norvegicus	RefSeq	GI_16758829-S	ILMN_276718	EIF2B4	NM_053950.1	NM_053950.1		117019	16758829	NM_053950.1	Eif2b4	NP_446402.1	ILMN_1355763	0006290332	S	1447	CTCATCACTCCGGTTGTTGAATCTGGTCTATGACGTGACTCCCCCCGAGC	6	+	25165382-25165431	6q14	Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 4 delta (Eif2b4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence TAS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence IDA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence NAS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence NAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IDA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress [goid 32057] [evidence IMP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence NAS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation [goid 31369] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Eif2b	Eif2b
Rattus norvegicus	RefSeq	GI_62656309-S	ILMN_59549	SAT2_PREDICTED	XM_340825.3	XM_340825.3		360547	109488372	XM_340825.3	Sat2_predicted	XP_340826.2	ILMN_1351412	0004200292	S	511	CGATTTGAAGGAGAGGCAATGAGGGAGTTGGCCGGATGCTGACTTATCCC	10	+	56442156-56442197:56442198-56442205	10q24	PREDICTED: Rattus norvegicus spermidine/spermine N1-acetyl transferase 2 (predicted) (Sat2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652903-S	ILMN_268317	RGD1306462	XR_005451.1	XR_005451.1		315214	109481166	XR_005451.1	RGD1306462		ILMN_1366237	0005390750	S	2601	ACAGAATATGCAGAGGACCCAGTCTCCACCACCCAGAGCGTCAGGTAGCC	7	-	127218272-127218321	7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700019P01 (RGD1306462), misc RNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718332-S	ILMN_288842	LOC679745	XM_001054303.1	XM_001054303.1		679745	109513078	XM_001054303.1	LOC679745	XP_001054303.1	ILMN_1361245	0000430082	S	574	CAACGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTGCAAGAGAGTTGG	Un|NW_047861.1	+	248760-248784:249506-249530		PREDICTED: Rattus norvegicus hypothetical protein LOC679745 (LOC679745), mRNA.					
Rattus norvegicus	RefSeq	GI_62649486-S	ILMN_54095	LOC500533	XM_575894.1	XM_575894.1		500533	62649486	XM_575894.1	LOC500533	XP_575894.1	ILMN_1363639	0004280438	S	1522	GGGGCCATCAGAGTTGGTGGTATGGTGTAAATAGAGCTGTTAAGTTGGAC					PREDICTED: Rattus norvegicus similar to DNMT1 associated protein-1 (LOC500533), mRNA.					
Rattus norvegicus	RefSeq	GI_13592042-S	ILMN_266180	RENBP	NM_031095.1	NM_031095.1		81759	13592042	NM_031095.1	Renbp	NP_112357.1	ILMN_1369241	0004850079	S	1037	CCAAGTGGCTGAATACACCTTCCACCAGTTTCGTGATCCTGAGTACGGGG	X	-	159849647-159849669:159853986-159854012	Xq37	Rattus norvegicus renin binding protein (Renbp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 6013] [evidence IEA]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence IEA]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence ISS]	Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate [goid 4476] [evidence IEA]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IDA]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate [goid 17076] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine [goid 50121] [evidence IDA]; Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine [goid 50121] [evidence TAS]; Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine [goid 50121] [evidence IEA]; Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine [goid 50121] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645325-S	ILMN_53289	RGD1562095_PREDICTED	XM_575157.2	XM_575157.2		499818	109468359	XM_575157.2	RGD1562095_predicted	XP_575157.1	ILMN_1359717	0000130546	S	955	GTGCTTGGGACGAGTGTGAGTGGGGATTAATGGAAGAGGAATGTTTACGG	3	+	62620608-62620657	3q24	PREDICTED: Rattus norvegicus similar to protein phosphatase 1, regulatory (inhibitor) subunit 1C (predicted) (RGD1562095_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012381-S	ILMN_281698	LOC681126	XM_001060532.1	XM_001060532.1		681126	109481305	XM_001060532.1	LOC681126	XP_001060532.1	ILMN_1360970	0004810519	S	786	GGAGACCCTCCGCCGCACCAGGGAGGAGATGAACGAGCTGAACCGCATCA	7	-	140180750-140180799	7q36	PREDICTED: Rattus norvegicus similar to keratin complex 2, basic, gene 25, transcript variant 1 (LOC681126), mRNA.					
Rattus norvegicus	RefSeq	GI_62659432-S	ILMN_47760	LOC498243	XM_579802.1	XM_579802.1		498243	62659432	XM_579802.1	LOC498243	XP_579802.1	ILMN_1367085	0003610451	S	942	TGCAACCAGCAATCTTTTGTTGCCCACCACTGAGAGTCATTGAAGGAAGC					PREDICTED: Rattus norvegicus LOC498243 (LOC498243), mRNA.					
Rattus norvegicus	RefSeq	GI_62650996-A	ILMN_299600	SPATA7	NM_138862.1	NM_138862.1		192225	20302019	NM_138862.1	Spata7	NP_620217.1	ILMN_1376540	0005080215	S	1834	GTCCAACAGGTCAATGATGAAACAGATTTCGAAGCCTTACCCTGGGACGG				6q32	Rattus norvegicus spermatogenesis associated 7 (Spata7), mRNA.		The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]		Wmp1; RSD-3	Wmp1; RSD-3
Rattus norvegicus	RefSeq	GI_50657413-S	ILMN_276935	ECG2	NM_001002816.1	NM_001002816.1		408237	50657413	NM_001002816.1	Ecg2	NP_001002816.1	ILMN_1368899	0004280301	S	57	GGACTGTGACATATACAAGAAGTACCCAGTAGTGGCCATCCCTTGCCCCA	18	-	58608180-58608229	18q12.1	Rattus norvegicus esophagus cancer-related protein 2 (Ecg2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639462-S	ILMN_56377	LOC494528	XM_577783.2	XM_577783.2		494528	109458557	XM_577783.2	LOC494528	XP_577783.2	ILMN_1370126	0003450129	S	74	TTCCTTTCTTCACTGCCTATGGGGGTGTTCTCTCGGGGAGCAAGCTGTGG	1	-	86393652-86393701	1q21	PREDICTED: Rattus norvegicus 11 kDa protein 1 (LOC494528), mRNA.					
Rattus norvegicus	RefSeq	GI_11990615-S	ILMN_279872	ACAN	NM_022190.1	NM_022190.1		58968	11990615	NM_022190.1	Acan	NP_071526.1	ILMN_1367163	0004610592	S	6795	CAGACCCCAACACCTACAAGCACAGGCTACAGAAGCGGACGATGAGACCC	1	+	134848369-134848379:134848854-134848892	1q31	Rattus norvegicus aggrecan (Acan), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEP]; The chemical reactions and pathways resulting in the formation of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans [goid 30166] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]	Agc	Agc
Rattus norvegicus	RefSeq	GI_17865340-S	ILMN_265688	PCDH21	NM_053572.1	NM_053572.1		93662	17865340	NM_053572.1	Pcdh21	NP_446024.1	ILMN_1367005	0002570253	S	4121	GGCCCGCACAGTATTGAGGGACAGGCACTAACCTGCTAAAGACCAGCCTG	16	-	13284117-13284166	16p14	Rattus norvegicus protocadherin 21 (Pcdh21), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	KIAA1775	KIAA1775
Rattus norvegicus	RefSeq	GI_62648701-S	ILMN_59534	RIPK2	XM_342810.3	XM_342810.3		362491	109474680	XM_342810.3	Ripk2	XP_342811.3	ILMN_1365904	0004230435	S	264	GGTGGCAGTGAAGCACCTGCACATTCACACGCCGCTGCTCGACAGTGAAA	5	-	30740887-30740892:30745635-30745678	5q13	PREDICTED: Rattus norvegicus receptor (TNFRSF)-interacting serine-threonine kinase 2 (Ripk2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence IEA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence IEA]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence ISS]; Interacting selectively with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family [goid 50700] [evidence IEA]; Interacting selectively with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family [goid 50700] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62648699-S	ILMN_59534	RIPK2	XM_342810.3	XM_342810.3		362491	109474680	XM_342810.3	Ripk2	XP_342811.3	ILMN_1352868	0006380390	S	1458	GAGCCAGATGACTGAAGCCTGCCTGAACCAATCCCTGGACGCCCTTCTGT	5	-	30715874-30715923	5q13	PREDICTED: Rattus norvegicus receptor (TNFRSF)-interacting serine-threonine kinase 2 (Ripk2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence IEA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence IEA]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence ISS]; Interacting selectively with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family [goid 50700] [evidence IEA]; Interacting selectively with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family [goid 50700] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639411-S	ILMN_53815	LOC292812	XM_214903.3	XM_214903.3		292812	62639411	XM_214903.3	LOC292812	XP_214903.3	ILMN_1360434	0004120053	S	61	CCTGCAGTCAGACCTACCTGGAGTCTGTGTGGGCTACAGACAGTGAGAGT				4q44	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC292812), mRNA.					
Rattus norvegicus	RefSeq	GI_56606087-S	ILMN_300489	CLDN19	NM_001008514.1	NM_001008514.1		298487	56606087	NM_001008514.1	Cldn19	NP_001008514.1	ILMN_1356908	0006220128	S	1410	GCCATCGCTCACCCCACTAACCAGCTTTCTCTCTTTTGACTTGCAGACCC	5	+	139842527-139842576	5q36	Rattus norvegicus claudin 19 (Cldn19), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	A neurological process that causes the sequential depolarization of a neuron's cell membrane along an axon [goid 19227] [evidence IEA]; The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents [goid 43297] [evidence IEA]; A neurological process that causes the sequential depolarization of a neuron's cell membrane along an axon [goid 19227] [evidence IEA]; The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents [goid 43297] [evidence IEA]; A neurological process that causes the sequential depolarization of a neuron's cell membrane along an axon [goid 19227] [evidence IEA]; The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents [goid 43297] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	claudin-19	claudin-19
Rattus norvegicus	RefSeq	GI_62649639-S	ILMN_268306	ADPRHL2_PREDICTED	XM_001057958.1	XM_001057958.1		362600	109477240	XM_001057958.1	Adprhl2_predicted	XP_001057958.1	ILMN_1372030	0003140064	S	1347	TGGGGCCATTGCTGGAGCTTACTATGGGGTGGAACAGGTGCCGGAGAGCT				5q36	PREDICTED: Rattus norvegicus ADP-ribosylhydrolase like 2 (predicted) (Adprhl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675378-S	ILMN_273381	CD36	NM_031561.2	NM_031561.2		29184	48675378	NM_031561.2	Cd36	NP_113749.2	ILMN_1361328	0005550025	S	2018	AACGCTTTGTTCCTCATCGAAGTAAACTGTTATCATGTCTGGGGTGGCCC	4	+	13525087-13525136	4q11	Rattus norvegicus CD36 molecule (thrombospondin receptor) (Cd36), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding the platelet alpha granule [goid 31092] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence IMP]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IMP]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IMP]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IMP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence IEP]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence IMP]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence IDA]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence TAS]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence IMP]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence IMP]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte [goid 43277] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IGI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence ISS]; Interacting selectively with high-density lipoprotein: one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 8035] [evidence ISS]	MGC108510; Fat; MGC91634	MGC108510; Fat; MGC91634
Rattus norvegicus	RefSeq	GI_56799391-S	ILMN_302774	CYP51	NM_012941.2	NM_012941.2		25427	56799391	NM_012941.2	Cyp51	NP_037073.1	ILMN_1364918	0005570670	S	2700	GGGTCCTAAGAAAGCAGGCTGACTAAGACACCAGGAGCAAGACAGTAAGC	4	+	26770811-26770860	4q13	Rattus norvegicus cytochrome P450, subfamily 51 (Cyp51), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45540] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: obtusifoliol + 3 O2 + 3 NADPH + 3 H+ = 4-alpha-methyl-5-alpha-ergosta-8,14,24(28)-trien-3-beta-ol + formate + 3 NADP+ + 3 H2O [goid 8398] [evidence IDA]; Catalysis of the reaction: obtusifoliol + 3 O2 + 3 NADPH + 3 H+ = 4-alpha-methyl-5-alpha-ergosta-8,14,24(28)-trien-3-beta-ol + formate + 3 NADP+ + 3 H2O [goid 8398] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RATCP14DM; MGC93630	RATCP14DM; MGC93630
Rattus norvegicus	RefSeq	GI_62660646-S	ILMN_273357	HDH	XM_001058820.1	XM_001058820.1		29424	109500755	XM_001058820.1	Hdh	XP_001058820.1	ILMN_1360694	0001780095	S	9841	GTGGAACAGAATCCGAGCTCTTGTAAGATGGTTCTGAGCCCCCCTGTCCC				14q21	PREDICTED: Rattus norvegicus Huntington disease gene homolog (Hdh), mRNA.					
Rattus norvegicus	RefSeq	GI_62647802-S	ILMN_267519	LOC686223	XM_001072956.1	XM_001072956.1		686223	109473788	XM_001072956.1	LOC686223	XP_001072956.1	ILMN_2038955	0003870747	S	621	GGGGAACTTCTACTACTTTTCCCGCACCCCAAAGACCTGGTATAGTGCGG					PREDICTED: Rattus norvegicus similar to CD207 antigen, langerin (LOC686223), mRNA.					
Rattus norvegicus	RefSeq	GI_58865355-A	ILMN_262390	SEPT4	XM_001081164.1	XM_001081164.1		287606	109491589	XM_001081164.1	Sept4	XP_001081164.1	ILMN_1376819	0006860372	S	629	CACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAGGAACGGAATCGC				10q26	PREDICTED: Rattus norvegicus septin 4 (Sept4), mRNA.	A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; Any of several heterooligomeric complexes containing multiple septins [goid 31105] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of sperm mitochondria; the process by which they take on their characteristic morphology; they are flattened, elongated, and arranged circumferentially into a tight helical coil around the tail-dense fibers of the mature sperm [goid 30382] [evidence IEA]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656737-I	ILMN_262390	SEPT4	XM_001081164.1	XM_001081164.1		287606	109491589	XM_001081164.1	Sept4	XP_001081164.1	ILMN_1375690	0003140348	S	684	GCTGACAAGAGAGAGTGGTACTGACTTCCCTATCCCTGCTGTCCCACCAG				10q26	PREDICTED: Rattus norvegicus septin 4 (Sept4), mRNA.	A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; Any of several heterooligomeric complexes containing multiple septins [goid 31105] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of sperm mitochondria; the process by which they take on their characteristic morphology; they are flattened, elongated, and arranged circumferentially into a tight helical coil around the tail-dense fibers of the mature sperm [goid 30382] [evidence IEA]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643133-S	ILMN_55744	LOC499562	XM_574886.1	XM_574886.1		499562	62643133	XM_574886.1	LOC499562	XP_574886.1	ILMN_1352545	0003520390	S	1031	CGTCATCAGACGGCAGTCCGTCGTTATCAAGTTTCCCAGTTCGCTGTTCC				2q23	PREDICTED: Rattus norvegicus similar to hypothetical protein A230042K10 (LOC499562), mRNA.					
Rattus norvegicus	RefSeq	GI_62646359-S	ILMN_279704	C20ORF165	NM_001025769.1	NM_001025769.1		499943	71043741	NM_001025769.1	C20orf165	NP_001020940.1	ILMN_1373871	0005220369	S	1430	CTCCTGCTCAGTCATGATGGGACTCACTTGGCTCTGACCCTGGAACTCTC	3	-	155859649-155859698	3q42	Rattus norvegicus chromosome 20 open reading frame 165 (C20orf165), mRNA.					
Rattus norvegicus	RefSeq	GI_62646361-S	ILMN_279704	C20ORF165	NM_001025769.1	NM_001025769.1		499943	71043741	NM_001025769.1	C20orf165	NP_001020940.1	ILMN_1358612	0006370408	S	483	GGAGGCCAGCTCCCAACCTGACATCTGCATCCTTACCCTGGCCATGATGA	3	-	155860596-155860645	3q42	Rattus norvegicus chromosome 20 open reading frame 165 (C20orf165), mRNA.					
Rattus norvegicus	RefSeq	GI_62654856-S	ILMN_55661	LOC503241	XM_578772.1	XM_578772.1		503241	62654856	XM_578772.1	LOC503241	XP_578772.1	ILMN_1365818	0006860400	S	1131	AGCTCTCTAGAACCCGTAAAGGAACCACCCCAGAGCCGTTGGACAGTGCA					PREDICTED: Rattus norvegicus similar to ferritin heavy chain (LOC503241), mRNA.					
Rattus norvegicus	RefSeq	GI_62645242-S	ILMN_289385	RGD1563716_PREDICTED	XR_007931.1	XR_007931.1		499810	109470086	XR_007931.1	RGD1563716_predicted		ILMN_1351715	0001190739	S	291	GCCAAGTCAGCAGGTGCCAAGTCTAGTGGTGGCAGGGAAGATTCGGAGTG				3q22	PREDICTED: Rattus norvegicus similar to hematological and neurological expressed sequence 1 (predicted) (RGD1563716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667191-S	ILMN_48418	LOC503451	XM_579001.1	XM_579001.1		503451	62667191	XM_579001.1	LOC503451	XP_579001.1	ILMN_1371057	0001240292	S	183	GTCCTGATAAATGAGAAAAAGACCAAGACAGGCAGTGAGGGCTTCGGGAG					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC503451), mRNA.					
Rattus norvegicus	RefSeq	GI_27675177-S	ILMN_285948	RGD1561582_PREDICTED	XM_001062852.1	XM_001062852.1		302337	109512251	XM_001062852.1	RGD1561582_predicted	XP_001062852.1	ILMN_1371965	0004280114	S	31	TTGTGTCCCTTTGTGTCCACTACAGGGGTCGGCAGCCCAGTGGCTGAAGT				Xq32	PREDICTED: Rattus norvegicus similar to Fus1 protein (predicted) (RGD1561582_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758777-S	ILMN_269171	EFNA5	NM_053903.1	NM_053903.1		116683	16758777	NM_053903.1	Efna5	NP_446355.1	ILMN_1358317	0004480458	S	664	GGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCCTCCTGGCGATGCTT	9	-	101227669-101227718	9q37	Rattus norvegicus ephrin A5 (Efna5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence NAS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence NAS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IMP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal [goid 45499] [evidence ISS]; Interacting selectively with an ephrin receptor [goid 46875] [evidence IDA]	Lerk7	Lerk7
Rattus norvegicus	RefSeq	GI_62658173-S	ILMN_290590	KLHL6_PREDICTED	XM_001062279.1	XM_001062279.1		287974	109494681	XM_001062279.1	Klhl6_predicted	XP_001062279.1	ILMN_1374143	0001990632	S	2324	CGTAGACAGGAAAACAGAAAGCCAACCCCAAACTCGGCTGGTGTCGCTTG				11q23	PREDICTED: Rattus norvegicus kelch-like 6 (Drosophila) (predicted) (Klhl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262178-S	ILMN_270981	DYNLL2	NM_080697.2	NM_080697.2		140734	54262178	NM_080697.2	Dynll2	NP_542428.1	ILMN_1367739	0004200041	S	2052	TGTTTTTCTTCAGTGCTGGCAGGGGAGGGTGGGAACTGGTGGTGACTGAG	10	-	76264105-76264154	10q26	Rattus norvegicus dynein light chain LC8-type 2 (Dynll2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; The process by which a neuronal cell in a multicellular organism interprets signals produced by potential target cells, with which it may form synapses [goid 8039] [evidence IEP]; The process by which a neuronal cell in a multicellular organism interprets signals produced by potential target cells, with which it may form synapses [goid 8039] [evidence IPI]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IDA]	MGC72334; Dlc2	MGC72334; Dlc2
Rattus norvegicus	RefSeq	GI_62646483-A	ILMN_291788	PHACTR3	NM_214459.1	NM_214459.1		362284	47523967	NM_214459.1	Phactr3	NP_999624.1	ILMN_1376553	0006450341	S	1405	GTAGCGAGAGCACAGGACTATGACAGGAGAGCAGACAAGCCCTGGACGAG				3q43	Rattus norvegicus phosphatase and actin regulator 3 (Phactr3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]	Scapin1; scapinin	Scapin1; scapinin
Rattus norvegicus	RefSeq	GI_62656161-S	ILMN_51745	RAI1_PREDICTED	XM_220520.4	XM_220520.4		303188	109488159	XM_220520.4	Rai1_predicted	XP_220520.4	ILMN_1364153	0002230239	S	2993	GACCCACTGTCCCCCAAGGCCCCTCTGATTTGTACCAAGGAGGAAGCAGA	10	+	46449977-46450026	10q22	PREDICTED: Rattus norvegicus retinoic acid induced 1 (predicted) (Rai1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657812-S	ILMN_49532	LOC363759	XM_344008.2	XM_344008.2		363759	62657812	XM_344008.2	LOC363759	XP_344009.2	ILMN_1354599	0006510164	S	135	GGATTCACAAAAGCAGCTTATGCCATCACTGTTGACCAGAATACTATGGG					PREDICTED: Rattus norvegicus similar to stress 70 protein chaperone, microsome-associated, 60kD human homolog (LOC363759), mRNA.					
Rattus norvegicus	RefSeq	GI_62645465-S	ILMN_275030	LOC311254	XM_001079389.1	XM_001079389.1		311254	109470395	XM_001079389.1	LOC311254	XP_001079389.1	ILMN_1365251	0005550551	S	1526	GCGACTTGCATAGCCTTCAGGACCGGGCGCTTGGTTGGGTGTTCATATGG				3q31-q32	PREDICTED: Rattus norvegicus hypothetical protein LOC311254 (LOC311254), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657187-S	ILMN_276160	CDC27	NM_001024793.1	NM_001024793.1		360643	67078435	NM_001024793.1	Cdc27	NP_001019964.1	ILMN_1359941	0007100142	S	2621	CTCTTGAGCCGCTATTGCCGTCGTTTGTCACCTAGACCATGAGTGCCGCT	10	-	93679140-93679189	10q32.1	Rattus norvegicus cell division cycle 27 homolog (S. cerevisiae) (Cdc27), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence IEA]	The cell cycle process whereby a cell progresses from metaphase to anaphase during mitosis, triggered by the destruction of mitotic cyclins [goid 7091] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655063-S	ILMN_277854	MARS2_PREDICTED	XM_001066991.1	XM_001066991.1		316403	109487177	XM_001066991.1	Mars2_predicted	XP_001066991.1	ILMN_1353574	0000940164	S	2012	GGCTAGTGAAAGCCCATAGGACCTAGGAACTCAGCCCTTATGGCTGATGG				9q31	PREDICTED: Rattus norvegicus methionine-tRNA synthetase 2 (mitochondrial) (predicted) (Mars2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655645-S	ILMN_275270	ATF7IP2	NM_001017471.1	NM_001017471.1		497859	62945297	NM_001017471.1	Atf7ip2	NP_001017471.1	ILMN_1355887	0004920195	S	1802	GGGTGGCTGGGAAGAAAATGAGGACAACTGGGAGAGCTAGCATAAAGCTG	10	-	5356571-5356620	10q11	Rattus norvegicus activating transcription factor 7 interacting protein 2 (Atf7ip2), mRNA.					
Rattus norvegicus	RefSeq	GI_62664739-S	ILMN_58432	LOC502181	XM_580239.1	XM_580239.1		502181	62664739	XM_580239.1	LOC502181	XP_580239.1	ILMN_1365970	0001340576	S	491	ACCTGACTGCCATCCTAAAGGGCTGACCCAGACTGTTGACCGCAAGGGTG					PREDICTED: Rattus norvegicus LOC502181 (LOC502181), mRNA.					
Rattus norvegicus	RefSeq	GI_62653919-S	ILMN_286533	RGD1311988_PREDICTED	XM_001058463.1	XM_001058463.1		315829	109485014	XM_001058463.1	RGD1311988_predicted	XP_001058463.1	ILMN_1367099	0004730082	S	2919	CACATGTCAACCGCCCGGAAGTCAAATCCACAACCATGGGCAGCTACGGC				8q24	PREDICTED: Rattus norvegicus similar to Protein C20orf129 (predicted) (RGD1311988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659855-S	ILMN_52044	AHCTF1_PREDICTED	XM_341161.3	XM_341161.3		360886	109498292	XM_341161.3	Ahctf1_predicted	XP_341162.3	ILMN_1356190	0001410398	S	8249	CGTGCGGGTGCGGCCGTTCAGCCAGGTCAGTCCATGGTCATTGCCTTGTT	13	-	95431783-95431832	13q26	PREDICTED: Rattus norvegicus AT hook containing transcription factor 1 (predicted) (Ahctf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393345-S	ILMN_286659	FABP6	NM_017098.1	NM_017098.1		25440	8393345	NM_017098.1	Fabp6	NP_058794.1	ILMN_1357837	0005130184	S	436	GCCACCAGGCTGGGCTCTGAGGGACTGCAACCCATCAATAAAAGTGCACC	10	-	28694783-28694832	10q21	Rattus norvegicus fatty acid binding protein 6, ileal (gastrotropin) (Fabp6), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]	IBABP	IBABP
Rattus norvegicus	RefSeq	GI_62652605-S	ILMN_54634	RGD1564237_PREDICTED	XM_216955.4	XM_216955.4		300027	109480905	XM_216955.4	RGD1564237_predicted	XP_216955.2	ILMN_1354285	0003440121	S	533	CCTCAAGGTGACAGGTTTAGCCACCCCCAGGTTGTCAAGGTTACTCATCC	7	+	113539943-113539992	7q34	PREDICTED: Rattus norvegicus similar to high density lipoprotein-binding protein (predicted) (RGD1564237_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657569-S	ILMN_279974	CHODL_PREDICTED	XM_001068598.1	XM_001068598.1		288289	109493908	XM_001068598.1	Chodl_predicted	XP_001068598.1	ILMN_1359498	0001580577	S	887	GCCTAGGAGGTCCCTACCTTTACCAGTGGAATGATGACAGGTGCAACATG				11q11	PREDICTED: Rattus norvegicus chondrolectin (predicted) (Chodl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302035-S	ILMN_281204	NBN	NM_138873.1	NM_138873.1		85482	20302035	NM_138873.1	Nbn	NP_620228.1	ILMN_1375215	0006040603	S	2535	GACCAAAGTCTCTTATCCACTAGCTGATTGATTTCCACCGTGGGTTGGGG	5	+	30576096-30576145	5q13	Rattus norvegicus nibrin (Nbn), mRNA.	The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence TAS]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence ISS]; Trimeric protein complex that possesses endonuclease activity; involved in DNA repair and checkpoint signaling. In Saccharomyces the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins related to the Saccharomyces proteins [goid 30870] [evidence ISS]; Intranuclear foci at which aggregated proteins have been sequestered [goid 42405] [evidence ISS]; Intranuclear foci at which aggregated proteins have been sequestered [goid 42405] [evidence ISS]	A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence TAS]; A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence ISS]; A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence IEA]; Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence TAS]; Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation [goid 1832] [evidence ISS]; An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation [goid 1832] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence TAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A signal transduction-based surveillance mechanism that acts during a mitotic cell cycle to ensure accurate chromosome segregation by preventing entry into mitosis in the presence of damaged DNA [goid 7095] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity [goid 7131] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence ISS]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IMP]; Any process that modulates the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48145] [evidence IDA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with damaged DNA [goid 3684] [evidence ISS]; Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	MGC93174; Nbs1	MGC93174; Nbs1
Rattus norvegicus	RefSeq	GI_62651039-S	ILMN_283950	PAPLN_PREDICTED	XM_001056967.1	XM_001056967.1		314297	109479620	XM_001056967.1	Papln_predicted	XP_001056967.1	ILMN_1367351	0000060672	S	3505	GGTGGCTGGAGACAGTGTGAACATTAGGTGGTCCAGGAACGGACTGCCAA				6q31	PREDICTED: Rattus norvegicus papilin, proteoglycan-like sulfated glycoprotein (predicted) (Papln_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665118-S	ILMN_289324	RBMXRT_PREDICTED	XM_001071004.1	XM_001071004.1		307779	109508623	XM_001071004.1	Rbmxrt_predicted	XP_001071004.1	ILMN_1366267	0001340315	S	1046	AAATTCGCGCAGTGCGCCCCCTACTCGTGGGCCACCACCATCTTATGGAG				19q11	PREDICTED: Rattus norvegicus RNA binding motif protein, X chromosome retrogene (predicted) (Rbmxrt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667569-S	ILMN_69549	LOC367944	XM_346362.2	XM_346362.2		367944	62667569	XM_346362.2	LOC367944	XP_346363.2	ILMN_1374658	0006510601	S	2531	GGCGGAAAAAAGGAGAGGGATGTGTAAGGAGTGTGGGTTTGGGGCGCTTC				Xq36	PREDICTED: Rattus norvegicus similar to Zinc finger protein ZIC 3 (Zinc finger protein of the cerebellum 3) (LOC367944), mRNA.					
Rattus norvegicus	RefSeq	GI_13592108-S	ILMN_300724	TGFB2	NM_031131.1	NM_031131.1		81809	13592108	NM_031131.1	Tgfb2	NP_112393.1	ILMN_1373682	0007040075	S	2344	CTGCCTGCCGAAGCTTCATGAGCAGCCATCTGTCCAGAAGGCCTGTTAAC	13	-	102719177-102719226	13q26	Rattus norvegicus transforming growth factor, beta 2 (Tgfb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence IEA]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence TAS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence IEA]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence IEA]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEA]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS];  [goid 7184] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epithelial cell migration [goid 10634] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IDA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence ISS]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence IEA]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of cell adhesion mediated by integrin [goid 33630] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence TAS]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins [goid 45726] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence ISS]; The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line [goid 48103] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process by which the anatomical structures of neurocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The neurocranium is the portion of the vertebrate skull surrounding the brain [goid 48702] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50777] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51280] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of catagen, the regression phase of the hair cycle [goid 51795] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of catagen, the regression phase of the hair cycle [goid 51795] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast [goid 51891] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast [goid 51891] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence IEA]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence ISS]; The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line [goid 48103] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of catagen, the regression phase of the hair cycle [goid 51795] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast [goid 51891] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]	Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence IEA]; Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS];  [goid 4702] [evidence ISS]; Interacting selectively with a type II transforming growth factor beta receptor [goid 5114] [evidence ISS]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IEA]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IMP]; Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666040-S	ILMN_267000	LIMS1_PREDICTED	XM_001053446.1	XM_001053446.1		309798	109510055	XM_001053446.1	Lims1_predicted	XP_001053446.1	ILMN_1373613	0004810403	S	4930	GCCGGGTAGTGAAAGAGAGAGGCTTCTTCCTGTGATAGACACGATGCTGC				20q11	PREDICTED: Rattus norvegicus LIM and senescent cell antigen-like domains 1 (predicted) (Lims1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32189354-S	ILMN_265698	SLC25A4	NM_053515.1	NM_053515.1		85333	32189354	NM_053515.1	Slc25a4	NP_445967.1	ILMN_1358247	0002320168	S	924	AGGTGCTTGGTCCAACGTACTGAGAGGCATGGGGGGTGCTTTTGTATTGG	16	+	49356905-49356954	16q11	Rattus norvegicus solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 (Slc25a4), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]; The directed movement of ADP, adenosine diphosphate, into, out of, within or between cells [goid 15866] [evidence IDA]; The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells [goid 15867] [evidence IDA]; The uptake of L-glutamate by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters [goid 51935] [evidence IEP]	Catalysis of the transfer of adenine nucleotides (AMP, ADP, and ATP) from one side of the membrane to the other [goid 295] [evidence TAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the reaction: ATP(out) + ADP(in) = ATP(in) + ADP(out) [goid 5471] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Ant1	Ant1
Rattus norvegicus	RefSeq	GI_62655872-S	ILMN_59123	LOC360495	XM_340769.2	XM_340769.2		360495	62655872	XM_340769.2	LOC360495	XP_340770.2	ILMN_1358873	0003710148	S	3022	TGGGCCACTCTAAAGGCTGTACCATCGCTAGGTCCCAGACTCTCCCCAAG				10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12681 (predicted) (LOC360495), mRNA.					
Rattus norvegicus	RefSeq	GI_62654604	ILMN_294470	LOC363174	XM_001065750.1	XM_001065750.1		363174	109514124	XM_001065750.1	LOC363174	XP_001065750.1	ILMN_1650876	0001850537	S	1633	AGAGCCATCCCGTGTCAGGCTTTGGGTCAGGAGTGTCCCTTGGACCTAGA				9q11	PREDICTED: Rattus norvegicus similar to shugoshin-like 1 (LOC363174), mRNA.					
Rattus norvegicus	RefSeq	GI_62647613-A	ILMN_282259	TACR1	NM_012667.1	NM_012667.1		24807	6981627	NM_012667.1	Tacr1	NP_036799.1	ILMN_1376350	0001050136	S	3171	TGGCTTCAGGACCCCTGGCAGGTGAGAATGCTGTTCCTTTCCGTCTCAGA	4	+	116780130-116780179	4q34	Rattus norvegicus tachykinin receptor 1 (Tacr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence TAS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with tachykinin to initiate a change in cell activity [goid 4995] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tac1r	Tac1r
Rattus norvegicus	RefSeq	GI_62646569-S	ILMN_69327	PCMTD2_PREDICTED	XM_230971.3	XM_230971.3		311726	109469375	XM_230971.3	Pcmtd2_predicted	XP_230971.3	ILMN_1374830	0000580722	S	1054	AGCATCAAGAGGGCTATGCGCCAGGAAGCCACCAGAGGAGGTGGTCTGAA	3	+	171012085-171012134	3q43	PREDICTED: Rattus norvegicus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 (predicted) (Pcmtd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642940-S	ILMN_284067	LOC294762	XM_001068789.1	XM_001068789.1		294762	109465961	XM_001068789.1	LOC294762	XP_001068789.1	ILMN_1370569	0006550685	S	2653	CTCCGAGTGATTGGGAATCAGACTGCAACTGGTTAAAGGACCACCACATC				2q15	PREDICTED: Rattus norvegicus similar to poly (ADP-ribose) polymerase family, member 8 (LOC294762), mRNA.					
Rattus norvegicus	RefSeq	GI_39930490-S	ILMN_275218	CDH8	NM_053393.1	NM_053393.1		84408	39930490	NM_053393.1	Cdh8	NP_445845.1	ILMN_1369697	0000780592	S	2954	CAATGGAACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGC				19p13	Rattus norvegicus cadherin 8 (Cdh8), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence NAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254793-S	ILMN_273827	CCL3	NM_013025.2	NM_013025.2		25542	40254793	NM_013025.2	Ccl3	NP_037157.2	ILMN_1369286	0006860022	S	572	GTAGCTATTTATTCTGAAAGACCTCAGGGCACATTCCTCAGCCCTCCCCC	10	-	71744691-71744740	10q26	Rattus norvegicus chemokine (C-C motif) ligand 3 (Ccl3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IDA]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence ISS]	Scya3; MIP-1a	Scya3; MIP-1a
Rattus norvegicus	RefSeq	GI_34864938-S	ILMN_49829	LOC365502	XM_345058.1	XM_345058.1		365502	34864938	XM_345058.1	LOC365502	XP_345059.1	ILMN_1372331	0004010278	S	391	CATCCACAGCCATGAGCATCTGCATACTTTTTCACAAAGCTCGAGTGCAG					PREDICTED: Rattus norvegicus similar to SPBPJ4664.02 (LOC365502), mRNA.					
Rattus norvegicus	RefSeq	GI_62718808-S	ILMN_269336	LOC688878	XM_001068684.1	XM_001068684.1		688878	109513276	XM_001068684.1	LOC688878	XP_001068684.1	ILMN_1370529	0002340706	S	876	CAAACATCCTGAATGAAAACAGCACCTGAGAGACAACTTGGGGGACAGCC	Un|NW_047874.1	+	1985639-1985653:1985771-1985805		PREDICTED: Rattus norvegicus hypothetical protein LOC688878 (LOC688878), mRNA.					
Rattus norvegicus	RefSeq	GI_62660257-S	ILMN_59471	LOC497695	XM_579325.1	XM_579325.1		497695	62660257	XM_579325.1	LOC497695	XP_579325.1	ILMN_1361436	0004280324	S	1468	GAATGCAGCAAGGAGCAGGGTTATCAGGTCTTTCTTGGGCAACTACGGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001009970 (LOC497695), mRNA.					
Rattus norvegicus	RefSeq	GI_56090334-S	ILMN_271489	MGC95152	NM_001007645.1	NM_001007645.1		297109	56090334	NM_001007645.1	MGC95152	NP_001007646.1	ILMN_1356591	0002480148	S	1231	GGGGACAGCCAGGATCTGAGCAAGTGCCCCTTAAGCTTTGAAGCCATAGA	4	+	83104781-83104830	4q24	Rattus norvegicus similar to B230212L03Rik protein (MGC95152), mRNA.					
Rattus norvegicus	RefSeq	GI_62649775-S	ILMN_69594	LOC500560	XM_575924.1	XM_575924.1		500560	62649775	XM_575924.1	LOC500560	XP_575924.1	ILMN_1355697	0005900671	S	158	GCGACAGGTGTCTGGAGGACCTGTGCTTAAACAATTGTATGGTAAAGGAG				5q36	PREDICTED: Rattus norvegicus similar to mitochondrial ATP synthase coupling factor 6 (LOC500560), mRNA.					
Rattus norvegicus	RefSeq	GI_62646619	ILMN_270629	RGD1565759_PREDICTED	XM_001058018.1	XM_001058018.1		362298	109472892	XM_001058018.1	RGD1565759_predicted	XP_001058018.1	ILMN_1650115	0000580450	S	1140	GCAGCCTTGGCTCCTGTACATAGCAGTGTGGAATCAGTGTGTGAGCAGCG				4q11	PREDICTED: Rattus norvegicus similar to actin-related protein 3-beta (predicted) (RGD1565759_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664426-S	ILMN_50564	LOC362373	XM_342697.2	XM_342697.2		362373	62664426	XM_342697.2	LOC362373	XP_342698.2	ILMN_1350263	0000670433	S	22	AGCCGTGTCTGGGCACCGTGTCTCCGGGTTTTGTCTTCATATCCTCGGCA				18q11	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC362373), mRNA.					
Rattus norvegicus	RefSeq	GI_62662020-S	ILMN_51187	LOC502031	XM_577463.1	XM_577463.1		502031	62662020	XM_577463.1	LOC502031	XP_577463.1	ILMN_1373515	0000670706	S	2309	GGGCGAGTTGACACAGACACAAAGACTGCCACAACTTAAACGAGCCAGGG					PREDICTED: Rattus norvegicus similar to glypican 6 precursor (LOC502031), mRNA.					
Rattus norvegicus	RefSeq	GI_62641713-S	ILMN_273882	ANKRD13D_PREDICTED	XM_001068648.1	XM_001068648.1		361699	109463335	XM_001068648.1	Ankrd13d_predicted	XP_001068648.1	ILMN_1366792	0000060021	S	2052	TAAACTGTCTGCTGCTGAGCTTTGGGCCTGGGGCACTGGAGGTAGGCTAG				1q42	PREDICTED: Rattus norvegicus ankyrin repeat domain 13 family, member D (predicted) (Ankrd13d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51854246-S	ILMN_50854	GNN	NM_001004093.1	NM_001004093.1		362863	51854246	NM_001004093.1	Gnn	NP_001004093.1	ILMN_1359209	0002190601	S	1592	GCAGGAAGTGAACAGGAGCCCCCTGCTAGCCCTTCTGAACTCCGCTTCTA				7q13	Rattus norvegicus Grp94 neighboring nucleotidase (Gnn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			MGC72977	MGC72977
Rattus norvegicus	RefSeq	GI_56090474-S	ILMN_270987	SKP1	NM_001007608.1	NM_001007608.1		287280	56090474	NM_001007608.1	Skp1	NP_001007609.1	ILMN_1363654	0001850471	S	1001	GGATGTCTTCCGACCTCTATGCTGCTGGTAAGCTCGTGTGCAGCTGGGCT	10	+	37680125-37680174	10q22	Rattus norvegicus S-phase kinase-associated protein 1 (Skp1), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1) [goid 19005] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655029-S	ILMN_51939	LOC501139	XM_576559.1	XM_576559.1		501139	62655029	XM_576559.1	LOC501139	XP_576559.1	ILMN_1371937	0006650538	S	323	GTCCGCAGAGAGAATCCAAAAAGCTGCAGGACGCGGGTAAGGCCCTGAGA					PREDICTED: Rattus norvegicus similar to Ormdl1 protein (LOC501139), mRNA.					
Rattus norvegicus	RefSeq	GI_62648208-S	ILMN_271396	RGD1562831_PREDICTED	XM_001067087.1	XM_001067087.1		362445	109474290	XM_001067087.1	RGD1562831_predicted	XP_001067087.1	ILMN_1361801	0000540593	S	515	TGCACAGAGAGTCATCATCACAGCCTTGGAAGTGGACAGACAACACTGCA				4q42	PREDICTED: Rattus norvegicus similar to osteoclast inhibitory lectin (predicted) (RGD1562831_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663733-S	ILMN_65536	LOC301899	XM_229383.3	XM_229383.3		301899	62663733	XM_229383.3	LOC301899	XP_229383.3	ILMN_1350488	0003870273	S	2285	CCCTCAAACCTCCATGCACACAGACCCCTCCCTTCCAAGGAGTAGTTAGT				17q12.1	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC301899), mRNA.					
Rattus norvegicus	RefSeq	GI_62653632-S	ILMN_62954	ZW10_PREDICTED	XM_343386.2	XM_343386.2		363059	62653632	XM_343386.2	Zw10_predicted	XP_343387.2	ILMN_1367297	0001170692	S	2644	GATGGGGGTGGGTATTAGGGGCACATTACTTGGTCTTACAAGAATTCGGG				8q23	PREDICTED: Rattus norvegicus ZW10 homolog, centromere/kinetochore protein (Drosophila) (predicted) (Zw10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254740-S	ILMN_268830	MT3	NM_053968.2	NM_053968.2		117038	40254740	NM_053968.2	Mt3	NP_446420.1	ILMN_1374039	0006130576	S	158	AGAAGAGCTGCTGCTCCTGTTGCCCTGCAGGATGTGAGAAGTGTGCCAAG	19	-	11284722-11284769:11286055-11286056	19p12	Rattus norvegicus metallothionein 3 (Mt3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The regulation of the levels, transport, and metabolism of metal ions within a cell or between a cell and its external environment [goid 6875] [evidence ISS]; The regulation of the levels, transport, and metabolism of metal ions within a cell or between a cell and its external environment [goid 6875] [evidence IEA]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50768] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of dendrite morphogenesis [goid 50774] [evidence NAS]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an iron-sulfur cluster, a combination of iron and sulfur atoms [goid 51536] [evidence IEA]	Mt-3; GIF	Mt-3; GIF
Rattus norvegicus	RefSeq	GI_62660331-S	ILMN_274642	SRD5A2L2_PREDICTED	XM_001065402.1	XM_001065402.1		364134	109500444	XM_001065402.1	Srd5a2l2_predicted	XP_001065402.1	ILMN_1358456	0006590088	S	799	ACAGTGTTGGCTCATCCCAGTCACACAGGGAGCAATGCTTGTTTCCCGAG				14p21	PREDICTED: Rattus norvegicus steroid 5 alpha-reductase 2-like 2 (predicted) (Srd5a2l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663607-S	ILMN_58964	ZNF307_PREDICTED	XM_214482.3	XM_214482.3		291164	62663607	XM_214482.3	Znf307_predicted	XP_214482.3	ILMN_1350329	0006180427	S	1242	GGTCAGAGTAGGGTGGCAAGCCTGGGGGATATTGTTGAAGCTCCTGAGAC				17q11	PREDICTED: Rattus norvegicus zinc finger protein 307 (predicted) (Znf307_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666123-A	ILMN_296060	TSPYL4	NM_001012075.1	NM_001012075.1		309828	58865719	NM_001012075.1	Tspyl4	NP_001012075.1	ILMN_1376888	0005890035	S	1500	GGCCTCCAAACTGCTTCTATGCCAAGCTCACGTGCTGTAGTTTGTACTGC	20	+	38640780-38640829	20q12	Rattus norvegicus TSPY-like 4 (Tspyl4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62659227-S	ILMN_286403	RGD1565260_PREDICTED	XR_007379.1	XR_007379.1		363970	109498535	XR_007379.1	RGD1565260_predicted		ILMN_1350512	0005270373	S	275	CTTGAAGGTTCTGAGGGTGAGCGTACTGAAAGCCCAGCAGTCACCAGTGT				13q11	PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (predicted) (RGD1565260_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650978-S	ILMN_63828	LOC366678	XM_578562.1	XM_578562.1		366678	62650978	XM_578562.1	LOC366678	XP_578562.1	ILMN_1371467	0005550446	S	80	CCGGAAACAGCTAGAAGAGGAGGAACGGAAGACGATCAGGGATGAGCACT				6q24	PREDICTED: Rattus norvegicus similar to M phase phosphoprotein 6 (LOC366678), mRNA.					
Rattus norvegicus	RefSeq	GI_62641332-S	ILMN_58196	LOC499269	XM_574566.1	XM_574566.1		499269	62641332	XM_574566.1	LOC499269	XP_574566.1	ILMN_1363511	0003060593	S	264	CAACTTGGTTCGGCCACTGCGACCCCACTGAAACCAGGCGCAGTCAGATA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700120K04 (LOC499269), mRNA.					
Rattus norvegicus	RefSeq	GI_62655542-S	ILMN_277203	KNTC2_PREDICTED	XM_001055564.1	XM_001055564.1		301701	109487647	XM_001055564.1	Kntc2_predicted	XP_001055564.1	ILMN_1354160	0003610008	S	1710	GACTCCCTGGAGAAACACAAGCACCTGCTGGAAAGCGCAGTGAACGAGGG				9q38	PREDICTED: Rattus norvegicus kinetochore associated 2 (predicted) (Kntc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.1373	ILMN_53780	MUTED_PREDICTED	XM_225255.4	XM_225255.4		306868	109504834	XM_225255.4	Muted_predicted	XP_225255.1	ILMN_1530278	0005050025	S	201	AATCCGTTACTTTGTAAAAGAATTTGAAGAAAAACGTGGTCTTCGAGAAT	17	+	32244818-32244845:32251447-32251468	17p12	PREDICTED: Rattus norvegicus muted homolog (mouse) (predicted) (Muted_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663424-S	ILMN_53780	MUTED_PREDICTED	XM_225255.4	XM_225255.4		306868	109504834	XM_225255.4	Muted_predicted	XP_225255.1	ILMN_1350942	0005860670	S	622	GAATGGGAACACACCTCATCCCCCCAAATCCTCCCACCAACCATGTAGCC	17	+	32264923-32264972	17p12	PREDICTED: Rattus norvegicus muted homolog (mouse) (predicted) (Muted_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341179-S	ILMN_294122	TPH2	NM_173839.2	NM_173839.2		317675	31341179	NM_173839.2	Tph2	NP_776211.1	ILMN_1357302	0002100280	S	2148	GATTGCACTGACCTTGTTGAAACCAATTTGTGGTACGCTTCCTGAAGTGC	7	-	54321415-54321464	7q22	Rattus norvegicus tryptophan hydroxylase 2 (Tph2), mRNA.		The chemical reactions and pathways resulting in the formation from tryptophan of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 6587] [evidence IEA]; The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9072] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: L-tryptophan + tetrahydrobiopterin + O2 = 5-hydroxy-L-tryptophan + 4-alpha-hydroxytetrahydrobiopterin + H2O [goid 4510] [evidence ISS]; Catalysis of the reaction: L-tryptophan + tetrahydrobiopterin + O2 = 5-hydroxy-L-tryptophan + 4-alpha-hydroxytetrahydrobiopterin + H2O [goid 4510] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ntph	Ntph
Rattus norvegicus	RefSeq	GI_62642690-S	ILMN_267196	LOC362068	XM_001056150.1	XM_001056150.1		362068	109465767	XM_001056150.1	LOC362068	XP_001056150.1	ILMN_1370031	0001770725	S	18867	GGGAGCCAAGAGGGAGGAACCTTGACTGATTCCCAGATTGTAGAGCTCAG					PREDICTED: Rattus norvegicus similar to very large G-protein coupled receptor 1 (LOC362068), mRNA.					
Rattus norvegicus	RefSeq	GI_62659690-S	ILMN_64391	PBX1_PREDICTED	XM_222911.4	XM_222911.4		304947	109498154	XM_222911.4	Pbx1_predicted	XP_222911.2	ILMN_1357396	0006650594	S	2324	CAGGTGTTTGCTAGGGACTGCCATACCTGGGCTTCTAAAGGTGCCACATG	13	-	83839778-83839827	13q24	PREDICTED: Rattus norvegicus pre-B-cell leukemia transcription factor 1 (predicted) (Pbx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742718-S	ILMN_283708	RIPK5	NM_199463.2	NM_199463.2		304791	55742718	NM_199463.2	Ripk5	NP_955750.1	ILMN_1373475	0005900497	S	5763	GGGCTGGCCTTAAAAGACACCTGGACCACAAACTCCCCTACAGGTTTCAG	13	+	45357570-45357619	13q13	Rattus norvegicus receptor interacting protein kinase 5 (Ripk5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	DustyPK	DustyPK
Rattus norvegicus	RefSeq	GI_62652690-S	ILMN_268322	RGD1565356_PREDICTED	XR_009032.1	XR_009032.1		500902	109482525	XR_009032.1	RGD1565356_predicted		ILMN_1351048	0002100707	S	1808	CACAACCAGGATTGGTGTGCCCTGGAGAAGCAGAGCCCTGAGGACTACGC				7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210421G13 (predicted) (RGD1565356_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654381-S	ILMN_54197	TMEM7_PREDICTED	XM_236656.3	XM_236656.3		316018	62654381	XM_236656.3	Tmem7_predicted	XP_236656.3	ILMN_1357981	0004570180	S	1220	CTGCGAGTGCTTCTGTGAGGTGTTAGAAGGCTGCTGCGGGTGCTTCGGTA				8q32	PREDICTED: Rattus norvegicus transmembrane protein 7 (predicted) (Tmem7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659020-S	ILMN_61275	LOC501839	XM_577252.1	XM_577252.1		501839	62659020	XM_577252.1	LOC501839	XP_577252.1	ILMN_1360415	0004730181	S	372	CAGGAAGCCACAGAGAGATGCCACGTGACCCAGCAAGCCTTTGGTCCGAA				12q16	PREDICTED: Rattus norvegicus similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding inhibitor) (DBI) (Endozepine) (EP) (LOC501839), mRNA.					
Rattus norvegicus	RefSeq	GI_16758037-S	ILMN_290873	TXN2	NM_053331.1	NM_053331.1		79462	16758037	NM_053331.1	Txn2	NP_445783.1	ILMN_1368589	0001450672	S	846	CTAGGGCTTGTTGCTATTCCCCTAGATGCTAGACAAAGCCTGGGCCAGCC	7	-	115833894-115833943	7q34	Rattus norvegicus thioredoxin 2 (Txn2), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol [goid 6662] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]	MGC93312	MGC93312
Rattus norvegicus	RefSeq	GI_62663118-S	ILMN_263701	RGD1308377_PREDICTED	XM_001060279.1	XM_001060279.1		306687	109505348	XM_001060279.1	RGD1308377_predicted	XP_001060279.1	ILMN_1362638	0005700551	S	3321	CTGTCATTGCTCTTTTGGGCTCTTTGTGGGGGGATTGCTATCAACATAAC				17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730414C17 (predicted) (RGD1308377_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665370-S	ILMN_68408	LOC498960	XM_579894.1	XM_579894.1		498960	62665370	XM_579894.1	LOC498960	XP_579894.1	ILMN_1363119	0002940324	S	406	ACAAGCCATGACAAGCCGGAGTCTCTGTAGCCTGGGCGGTGGGAAGCTAT					PREDICTED: Rattus norvegicus LOC498960 (LOC498960), mRNA.					
Rattus norvegicus	RefSeq	GI_56799413-S	ILMN_273099	STMN2	NM_053440.2	NM_053440.2		84510	56799413	NM_053440.2	Stmn2	NP_445892.1	ILMN_1367155	0002760619	S	1646	GGGGGCTAGGCAGGGCATTTGTGCCACTGTAAGAATCAGCAGAGACCCAG	2	-	95285055-95285104	2q23	Rattus norvegicus stathmin-like 2 (Stmn2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Scg10; MGC105372; Scgn10	Scg10; MGC105372; Scgn10
Rattus norvegicus	RefSeq	GI_62661813-S	ILMN_62520	KCTD12_PREDICTED	XM_344450.2	XM_344450.2		364458	62661813	XM_344450.2	Kctd12_predicted	XP_344451.2	ILMN_1349885	0004780026	S	1798	GCCCGCGGTGACCAATTAATACAGGAATGGTTAGTAGGGTCAGACAGCCC				15q22	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 12 (predicted) (Kctd12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664750-S	ILMN_59144	LOC498899	XM_574186.1	XM_574186.1		498899	62664750	XM_574186.1	LOC498899	XP_574186.1	ILMN_1365370	0003290670	S	2109	TGCTGACGAGGATGCGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGGG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498899), mRNA.					
Rattus norvegicus	RefSeq	GI_47577650-S	ILMN_297186	OLR648	NM_001000641.1	NM_001000641.1		404834	47577650	NM_001000641.1	Olr648	NP_001000641.1	ILMN_1366400	0003940040	S	869	CAGAGATGAAGAATGCCCTACGGAAAGTTTGGGGTCATCAAGGACTTCTG	3	+	72665710-72665759	3q24	Rattus norvegicus olfactory receptor 648 (Olr648), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr648	Olr648
Rattus norvegicus	RefSeq	GI_62663979-S	ILMN_284021	RGD1560083_PREDICTED	XM_001053631.1	XM_001053631.1		498806	109506252	XM_001053631.1	RGD1560083_predicted	XP_001053631.1	ILMN_1353262	0005670095	S	4686	GGAGGAACCCCAGGATCAGCGCATTGAGAGTAATGAGAGGTGTTGGACCG				17q12.3	PREDICTED: Rattus norvegicus similar to myosin IIIA (predicted) (RGD1560083_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642917-S	ILMN_281330	RGD1307735_PREDICTED	XM_001066855.1	XM_001066855.1		361898	109465930	XM_001066855.1	RGD1307735_predicted	XP_001066855.1	ILMN_1355050	0005390039	S	2042	TCAGAGACTTCCCCTTTACTCGGAACAGCCTGGCACCTCTGCCGGACCAA				2q14	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11795 (predicted) (RGD1307735_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654990-S	ILMN_67076	ANKRD39_PREDICTED	XM_346038.3	XM_346038.3		367251	109485948	XM_346038.3	Ankrd39_predicted	XP_346039.3	ILMN_1367918	0006100750	S	435	GCCGAGAAGGGTCATGAGGACATTTGCTCCCTCCTGTTACAACACAGCCC	9	-	35481862-35481911	9q21	PREDICTED: Rattus norvegicus ankyrin repeat domain 39 (predicted) (Ankrd39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654464-S	ILMN_58315	LOC501068	XM_576482.1	XM_576482.1		501068	62654464	XM_576482.1	LOC501068	XP_576482.1	ILMN_1367331	0000540369	S	875	TAGAAGGCCCTTACTTCTGCCTAAAAAGAATGCTGGGTCAGGGACTGCCC					PREDICTED: Rattus norvegicus similar to Ab2-143 (LOC501068), mRNA.					
Rattus norvegicus	RefSeq	GI_12018255-S	ILMN_298655	ECH1	NM_022594.1	NM_022594.1		64526	12018255	NM_022594.1	Ech1	NP_072116.1	ILMN_1364554	0000070008	S	849	ACTCCCGAGACCATTCTGTGGACGAGAGCCTTGACTATATGGCCACTTGG	1	+	83938522-83938562:83938711-83938719	1q21	Rattus norvegicus enoyl coenzyme A hydratase 1, peroxisomal (Ech1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Pxel	Pxel
Rattus norvegicus	RefSeq	GI_51036663-S	ILMN_289972	GNAI2	NM_031035.2	NM_031035.2		81664	51036663	NM_031035.2	Gnai2	NP_112297.1	ILMN_1367964	0004060575	S	2061	TCGCCCCAGGCCCGGGACCTCCAGCGTTGAACACTTCCTTGCTTTTTTCA	8	-	112862010-112862059	8q32	Rattus norvegicus guanine nucleotide binding protein, alpha inhibiting 2 (Gnai2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IMP]; The series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 1973] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence ISS]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IEA]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence ISS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IDA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor coupled to effectors through GTP-binding proteins [goid 7216] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IMP]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50805] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51927] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]	Galphai2	Galphai2
Rattus norvegicus	RefSeq	GI_62645909-S	ILMN_275825	RASSF2	NM_001037096.1	NM_001037096.1		311437	79749366	NM_001037096.1	Rassf2	NP_001032173.1	ILMN_1358492	0005290128	S	2031	GACCGGGTGTGTGCTGGGATAAATGGCACTCGTAGACTGGAGGGAAGGTC	3	-	119737079-119737128	3q36	Rattus norvegicus Ras association (RalGDS/AF-6) domain family member 2 (Rassf2), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124713	MGC124713
Rattus norvegicus	RefSeq	GI_62661002-S	ILMN_267293	ZFP503_PREDICTED	XM_001065659.1	XM_001065659.1		305687	109502140	XM_001065659.1	Zfp503_predicted	XP_001065659.1	ILMN_1367725	0001450079	S	3617	GCTCCAAGCGGACCCGTGGTTCAAAAGTGCATTATTTAGTTTGAGCTCCG				15p16	PREDICTED: Rattus norvegicus zinc finger protein 503 (predicted) (Zfp503_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660526-S	ILMN_55958	LOC361915	XM_342211.2	XM_342211.2		361915	62660526	XM_342211.2	LOC361915	XP_342212.2	ILMN_1349369	0001740020	S	1110	GCTCTGAGTACTTGAGGAAAGAAGCAGGAGAGAGCATATATCAGCAGCTT					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC361915), mRNA.					
Rattus norvegicus	RefSeq	GI_62651127-S	ILMN_48468	LOC500704	XM_576086.1	XM_576086.1		500704	62651127	XM_576086.1	LOC500704	XP_576086.1	ILMN_1369332	0001450711	S	264	AACTTGAGGCTCGGGACCACAGAAATAGCAGACCAAAGTACCCTAGAGGA					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500704), mRNA.					
Rattus norvegicus	RefSeq	GI_47577140-S	ILMN_298789	OLR332	NM_001000250.1	NM_001000250.1		293769	47577140	NM_001000250.1	Olr332	NP_001000250.1	ILMN_1355862	0005900458	S	802	TCCCTCAGCCACGACAAGGTGGTATCTGTCTTCTATGCTGTGGTGATCCC	1	-	215238483-215238532	1q43	Rattus norvegicus olfactory receptor 332 (Olr332), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr332; ratchr1-215397764-215396805_ORF	Olr332; ratchr1-215397764-215396805_ORF
Rattus norvegicus	RefSeq	GI_27229309-S	ILMN_69898	WRNIP1	NM_172332.2	NM_172332.2		282835	70778971	NM_172332.2	Wrnip1	NP_758835.1	ILMN_1351233	0001850072	S	2098	AGCCTGTGGACCAGGACTACCTGCCTGAGGAACTGAGAGGAGTTGACTTC	17	-	37982560-37982609	17p12	Rattus norvegicus Werner helicase interacting protein 1 (Wrnip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; Any process that modulates the frequency, rate or extent of initiation of DNA replication; the process by which DNA becomes competent to replicate. In eukaryotes, replication competence is established in early G1 and lost during the ensuing S phase [goid 30174] [evidence ISS]; Any process that modulates the frequency, rate or extent of initiation of DNA replication; the process by which DNA becomes competent to replicate. In eukaryotes, replication competence is established in early G1 and lost during the ensuing S phase [goid 30174] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Wrnip; Whip; MGC112594	Wrnip; Whip; MGC112594
Rattus norvegicus	RefSeq	GI_47576946-S	ILMN_298621	OLR251	NM_001000218.1	NM_001000218.1		293394	47576946	NM_001000218.1	Olr251	NP_001000218.1	ILMN_1365957	0002630368	S	671	TTCTCATTACCATCCTGAAGATGCACTCCACTGAGGGTCGACAGAAGGCC	1	-	165563478-165563527	1q33	Rattus norvegicus olfactory receptor 251 (Olr251), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-165674861-165673917_ORF; Olr251	ratchr1-165674861-165673917_ORF; Olr251
Rattus norvegicus	RefSeq	GI_6978670-S	ILMN_290209	CNGA2	NM_012928.1	NM_012928.1		25411	6978670	NM_012928.1	Cnga2	NP_037060.1	ILMN_1359887	0004760008	S	2828	CCGTGAGGGGAGTGGTAGGGTGGGTTTGAGTGTGTGTGCTCAGGGTCATA	X	-	157559103-157559152	Xq37	Rattus norvegicus cyclic nucleotide gated channel alpha 2 (Cnga2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEP]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]	OLFCH; Cncg4	OLFCH; Cncg4
Rattus norvegicus	RefSeq	GI_62652998-S	ILMN_280768	FAM113B	NM_001039454.1	NM_001039454.1		315283	86515433	NM_001039454.1	Fam113b	NP_001034543.1	ILMN_1370472	0005690465	S	1515	TGAGGGCGACTTTAGCTTTTATCCCCAGCCACCCATGCCCAACTTCCGCC	7	+	136105517-136105566	7q35-q36	Rattus norvegicus family with sequence similarity 113, member B (Fam113b), mRNA.				MGC124719	MGC124719
Rattus norvegicus	RefSeq	GI_62643137-S	ILMN_55915	LOC361085	XM_341369.2	XM_341369.2		361085	62643137	XM_341369.2	LOC361085	XP_341370.2	ILMN_1369406	0004730603	S	798	CACCTGCCGCAGAGGTTGAAGAGAGCCCACAACAAAGGAGAGAATTCAAG					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC361085), mRNA.					
Rattus norvegicus	RefSeq	GI_47777725-S	ILMN_267084	OLR1702	NM_001001374.1	NM_001001374.1		294157	47777725	NM_001001374.1	Olr1702	NP_001001374.1	ILMN_1355326	0000060026	S	883	GATGTAAAGGGAGCTTTGAAGAGACTGGTGAGAAAAGATAACAGCACTGG	20	+	770566-770615	20p12	Rattus norvegicus olfactory receptor 1702 (Olr1702), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Olr1702	Olr1702
Rattus norvegicus	RefSeq	GI_62654729-S	ILMN_270373	RUNX2	XM_346016.2	XM_346016.2		367218	62654729	XM_346016.2	Runx2	XP_346017.2	ILMN_1365491	0003130497	S	1224	CACCGACGTACCCAGGCGTATTTCAGATGATGACACTGCCACCTCTGACT	9	+	11965722-11965747:12019117-12019140	9q12	PREDICTED: Rattus norvegicus runt related transcription factor 2 (Runx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone [goid 2051] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEA]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence ISS]; Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 40036] [evidence IEA]; Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 40036] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that modulates the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42487] [evidence IEA]; Any process that modulates the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates [goid 42487] [evidence ISS]; Any process that modulates the frequency, rate or extent of osteoblast differentiation [goid 45667] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of smoothened signaling [goid 45879] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smoothened signaling [goid 45879] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656392-S	ILMN_64024	HBQ1_PREDICTED	XM_347266.2	XM_347266.2		303007	62656392	XM_347266.2	Hbq1_predicted	XP_347267.2	ILMN_1357116	0000670500	S	243	TCTGCGTGGACCCTGCTAACTTTCAGAGACTTCAACCCGGGGATGCATGC				10q12	PREDICTED: Rattus norvegicus hemoglobin, theta 1 (predicted) (Hbq1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643993-S	ILMN_297107	RGD1560823_PREDICTED	XR_007782.1	XR_007782.1		502559	109514783	XR_007782.1	RGD1560823_predicted		ILMN_1352174	0003990541	S	473	GGCCTGGACATAACATGACACCTGCAAACAAGGATCCAAGGCAGAAGTTG				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1560823_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662694-S	ILMN_53162	PCM1	XM_344524.3	XM_344524.3		81740	109503374	XM_344524.3	Pcm1	XP_344525.2	ILMN_1357501	0004010463	S	6363	GCTGGAAACCCTCAGATACTGAAAGAACCTGAAACAGTGGGAGCCCAGAG	16	-	54321903-54321922:54322967-54322996	16q12.1	PREDICTED: Rattus norvegicus pericentriolar material 1 (Pcm1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; An immotile primary cilium that may be missing the central pair of microtubules, or the central pair of microtubules and outer dynein arms. Some primary cilia also have altered arrangements of outer microtubules (fewer than nine and/or not always present as doublets). Nonmotile primary cilia typically function as sensory organelles that concentrate and organize sensory signaling molecules [goid 31513] [evidence ISS]; A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; cetriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome [goid 34451] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The assembly of a cilium, a specialized eukaryotic locomotor organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 42384] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized [goid 51297] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662690-S	ILMN_263698	RGD1305337_PREDICTED	XM_001063622.1	XM_001063622.1		290767	109504224	XM_001063622.1	RGD1305337_predicted	XP_001063622.1	ILMN_1354644	0002340541	S	1105	GGAGGTGGAAGTGGGAAAGAAGACGGAGTGGGAAGTGGGTATCTGCAAGG				16q12.1	PREDICTED: Rattus norvegicus similar to tripartite motif-containing 11 (predicted) (RGD1305337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718257	ILMN_50524	LOC501341	XM_576752.1	XM_576752.1		501341	62718257	XM_576752.1	LOC501341	XP_576752.1	ILMN_1650187	0007100563	S	3118	TGCCATCTGGGATGATAGGTCCCTGTACAGGATACTCGTGCTTGGTAAGT					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501341), mRNA.					
Rattus norvegicus	RefSeq	GI_62654633-S	ILMN_67594	LOC363180	XM_343520.2	XM_343520.2		363180	62654633	XM_343520.2	LOC363180	XP_343521.2	ILMN_1372144	0005340039	S	575	CATCTGTGTCCCCAGTGCAAAGGAACAGCAGTTTCATGAGAAAAGTACTC				9q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC363180), mRNA.					
Rattus norvegicus	RefSeq	GI_62657563-S	ILMN_278189	RGD1563102_PREDICTED	XM_001067643.1	XM_001067643.1		498044	109493885	XM_001067643.1	RGD1563102_predicted	XP_001067643.1	ILMN_1374036	0004590497	S	430	CGACCTTCTCAACTTCCTTTCCCACATAGCAGAGGCTCAGGGCGAGACAG				11q11	PREDICTED: Rattus norvegicus RGD1563102 (predicted) (RGD1563102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658730-S	ILMN_268809	STYXL1	NM_001037788.1	NM_001037788.1		360792	83649763	NM_001037788.1	Styxl1	NP_001032877.1	ILMN_1359295	0001740253	S	1017	GTCTCTGAGGAGTCTGGGTTGGGACTTTTGGGGGCTGGGAGTCTGGGTTT	12	+	22067056-22067105	12q12	Rattus norvegicus serine/threonine/tyrosine interacting-like 1 (Styxl1), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]	MGC112640; RGD1305845; Dusp24	MGC112640; RGD1305845; Dusp24
Rattus norvegicus	RefSeq	GI_20806166-S	ILMN_266705	NR2F6	NM_139113.1	NM_139113.1		245980	20806166	NM_139113.1	Nr2f6	NP_620813.1	ILMN_1369752	0002350008	S	1608	GCATGCTAGTGCCTCTGGTGTCCTGGGTATCTGGAAGGGCCACTGCAGCT	16	-	18535275-18535324	16p14	Rattus norvegicus nuclear receptor subfamily 2, group F, member 6 (Nr2f6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night) [goid 43153] [evidence ISS]; The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night) [goid 43153] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence ISS]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665498-S	ILMN_51768	LOC307951	XM_226573.3	XM_226573.3		307951	62665498	XM_226573.3	LOC307951	XP_226573.3	ILMN_1354562	0004810270	S	784	CTGGCCCTATGCGTTTTCCTGTGTGTTTTCTACCCCAAGTCATGGCCGCC					PREDICTED: Rattus norvegicus similar to solute carrier family 35, member F3 (LOC307951), mRNA.					
Rattus norvegicus	RefSeq	GI_62644589-S	ILMN_279735	LOC310946	XM_001078514.1	XM_001078514.1		310946	109467726	XM_001078514.1	LOC310946	XP_001078514.1	ILMN_1354050	0006370397	S	2508	ACAGCCGTCCTGATTCATCATGTGATTGTGTCAGCATGCAGAGGGCGGAG				2q45	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20331 (LOC310946), mRNA.					
Rattus norvegicus	RefSeq	GI_62660290-S	ILMN_61191	MOBKL1A_PREDICTED	XM_341194.2	XM_341194.2		360920	62660290	XM_341194.2	Mobkl1a_predicted	XP_341195.2	ILMN_1368499	0001780079	S	606	TTCCTATCCTGCCCTACCCCTTTGAGCAGTTTCTTGGGATTGCTTTGATG				14p22	PREDICTED: Rattus norvegicus MOB1, Mps One Binder kinase activator-like 1A (yeast) (predicted) (Mobkl1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59624972-S	ILMN_60902	KCNJ11	NM_031358.3	NM_031358.3		83535	59624972	NM_031358.3	Kcnj11	NP_112648.2	ILMN_1368736	0001190577	S	2676	CCAACTCCACCATTTGACATCCACCAGACATCATAGTCAAGGGCCTGGGC	1	-	96615268-96615317	1q22	Rattus norvegicus potassium inwardly rectifying channel, subfamily J, member 11 (Kcnj11), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.2 subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SUR1 subunit stimulates channel activity [goid 8282] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of potassium ions into a cell or organelle [goid 10107] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IEA]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI];  [goid 15272] [evidence IEA];  [goid 15272] [evidence IDA];  [goid 15272] [evidence IMP]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir6.2	Kir6.2
Rattus norvegicus	RefSeq	GI_21955161-S	ILMN_66894	IL13RA1	NM_145789.2	NM_145789.2		252963	62899062	NM_145789.2	Il13ra1	NP_665732.2	ILMN_2040922	0006940653	S	996	CAAGTTATGCTTTGATGACAACGACCTGTGGAGTAATTGGAGCGAAGCGC	X	-	8783440-8783489	Xq12	Rattus norvegicus interleukin 13 receptor, alpha 1 (Il13ra1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that activates or increases the frequency, rate, or extent of immunoglobulin production [goid 2639] [evidence IDA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with interleukin-13 to initiate a change in cell activity [goid 16515] [evidence IPI]	MGC105309	MGC105309
Rattus norvegicus	RefSeq	GI_62660510-S	ILMN_55216	LOC301215	XM_217332.3	XM_217332.3		301215	62660510	XM_217332.3	LOC301215	XP_217332.3	ILMN_1368343	0006660082	S	92	CTGCACCTTAAGAGCAGCATCATCAAGGCTGGATGTCGAATTGCCAGTAC					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC301215), mRNA.					
Rattus norvegicus	RefSeq	GI_62665183-S	ILMN_58875	LOC361399	XM_341679.2	XM_341679.2		361399	62665183	XM_341679.2	LOC361399	XP_341680.2	ILMN_1357987	0001090139	S	4083	GCACTAGGCTTACAGCCAGGGATGATGTGCTACTGCTGCCACTGCCACTG				19q12	PREDICTED: Rattus norvegicus similar to autoantigen (LOC361399), mRNA.					
Rattus norvegicus	RefSeq	GI_62667288	ILMN_54228	LOC317402	XM_228817.3	XM_228817.3		317402	62667288	XM_228817.3	LOC317402	XP_228817.3	ILMN_1650839	0003290372	S	1464	GGCCTTCTCTACCACTAGGCCCACAGTATCCTACACCCAGAGTTGCTGGA					PREDICTED: Rattus norvegicus similar to nuclear RNA export factor 1 (LOC317402), mRNA.					
Rattus norvegicus	RefSeq	GI_62658410-S	ILMN_264163	GSH1_PREDICTED	XM_001069419.1	XM_001069419.1		288457	109496543	XM_001069419.1	Gsh1_predicted	XP_001069419.1	ILMN_1368439	0002480575	S	1561	TCCCTTAAACAGGGACCAGGTCTTGCTGTTCGAAGAAGTCCCCTTAGCAG				12p11	PREDICTED: Rattus norvegicus genomic screened homeo box 1 (predicted) (Gsh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393754-S	ILMN_68691	MBC2	NM_017249.2	NM_017249.2		29579	75832131	NM_017249.2	Mbc2	NP_058945.2	ILMN_1351729	0005080180	S	3063	ACCCCTATGTGTCAGTGTTGCTGCTCCCAGACAAGAACCGAGGCACCAAG	7	-	1792157-1792206	7q11	Rattus norvegicus membrane bound C2 domain containing protein (Mbc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124625	MGC124625
Rattus norvegicus	RefSeq	GI_62656595-S	ILMN_264213	TMEM199	NM_001024992.1	NM_001024992.1		303332	68163424	NM_001024992.1	Tmem199	NP_001020163.1	ILMN_1348905	0004070041	S	928	GAATCCAGGCCTTTCCCCCAGATGGACTATACTGCCTTGAACTGGCCCAA	10	-	64617307-64617356	10q25	Rattus norvegicus transmembrane protein 199 (Tmem199), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109028	MGC109028
Rattus norvegicus	RefSeq	GI_68163424	ILMN_264213	TMEM199	NM_001024992.1	NM_001024992.1		303332	68163424	NM_001024992.1	Tmem199	NP_001020163.1	ILMN_1530495	0001230332	S	1155	AAAGATGTCTACCTTGTCCCGTTGTCTTCATTTTGTTATACTTTTCAGAA	10	-	64617080-64617129	10q25	Rattus norvegicus transmembrane protein 199 (Tmem199), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109028	MGC109028
Rattus norvegicus	RefSeq	GI_62657309-S	ILMN_269448	RGD1564512_PREDICTED	XR_009484.1	XR_009484.1		498021	109492196	XR_009484.1	RGD1564512_predicted		ILMN_1361255	0004560279	S	455	GGGGCCACATCCTTACGCTTTGTGTACCCTCTTGATTTTGCCCGTACCAG				10q32.2	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (predicted) (RGD1564512_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079114-S	ILMN_292263	DNAJC16	NM_001014194.1	NM_001014194.1		362652	62079114	NM_001014194.1	Dnajc16	NP_001014216.1	ILMN_1358362	0000730184	S	2373	CGAGGGCTCTTCGGATTGTAGCGTACCCCAGGGACAGGGTTTTCCAGAGA	5	-	160664616-160664665	5q36	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 16 (Dnajc16), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC109011; Dnajc16	MGC109011; Dnajc16
Rattus norvegicus	RefSeq	GI_62661430-S	ILMN_64395	LOC290196	XM_224155.3	XM_224155.3		290196	62661430	XM_224155.3	LOC290196	XP_224155.3	ILMN_1367717	0002510619	S	346	GCGCCACAGTGACACAGGGTACAGAGAGGGGCTAACAGAAACCTCAGATC					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 4 (LOC290196), mRNA.					
Rattus norvegicus	RefSeq	GI_27721598-S	ILMN_54197	TMEM7_PREDICTED	XM_236656.4	XM_236656.4		316018	109484004	XM_236656.4	Tmem7_predicted	XP_236656.4	ILMN_2039701	0006100220	S	635	AAGCATCGGACGTGAGCCCCCAAGCCAGTAACCCCTCCAAAGAGGACCCT	8	-	115389299-115389348	8q32	PREDICTED: Rattus norvegicus transmembrane protein 7 (predicted) (Tmem7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638616	ILMN_268236	LOC292393	XR_007133.1	XR_007133.1		292393	109513938	XR_007133.1	LOC292393		ILMN_1650680	0000940593	S	1	ATGGTGCCAGCCACTCATGACCAAGGCAGAGACAATGATGATGGTCGACC	Un|NW_047980.1	+	26538-26587		PREDICTED: Rattus norvegicus similar to KP78b CG17216-PA (LOC292393), mRNA.					
Rattus norvegicus	RefSeq	GI_19424265-S	ILMN_289752	IL1RL2	NM_133575.1	NM_133575.1		171106	19424265	NM_133575.1	Il1rl2	NP_598259.1	ILMN_1366873	0006770441	S	1520	GCCCTCGTCCAGGACGGCATGAAGGTCATTCTGATTGAACTGGAGAGAGT	9	+	39537269-39537318	9q21	Rattus norvegicus interleukin 1 receptor-like 2 (Il1rl2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA];  [goid 4909] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667262-S	ILMN_52835	LOC503464	XM_579017.1	XM_579017.1		503464	62667262	XM_579017.1	LOC503464	XP_579017.1	ILMN_1369624	0005860647	S	1559	GGACTGCTGTGACACGTATACATCCAAGTGCTATCGCCTGCTGCACCTGC				Xq35	PREDICTED: Rattus norvegicus similar to preferentially expressed antigen in melanoma-like 3 (LOC503464), mRNA.					
Rattus norvegicus	RefSeq	GI_13928901-S	ILMN_283007	KCNAB3	NM_031652.1	NM_031652.1		58981	13928901	NM_031652.1	Kcnab3	NP_113840.1	ILMN_1366457	0004280195	S	2016	GGGCCTTGAAATGTCATGAAGGGGGCAAGAACCTACACTGGGAAGGGGGC	10	+	56126455-56126504	10q24	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, beta member 3 (Kcnab3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667524-S	ILMN_265633	CETN2	XM_001053739.1	XM_001053739.1		84593	109462272	XM_001053739.1	Cetn2	XP_001053739.1	ILMN_1349966	0002350082	S	1248	GGCCACTCCACCTTCCATGACTTCACCTTACTCATGCATTTCCACAGAGC				Xq37	PREDICTED: Rattus norvegicus centrin 2 (Cetn2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence ISS]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence ISS]; A short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum that is similar in structure to a centriole. The basal body serves as a nucleation site for axoneme growth [goid 5932] [evidence IDA]; A short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum that is similar in structure to a centriole. The basal body serves as a nucleation site for axoneme growth [goid 5932] [evidence ISS]; A 9+0 cilium that forms the portion of the axoneme traversing the boundary between the photoreceptor inner and outer segments [goid 32391] [evidence ISS]	The cell cycle process whereby a daughter centriole is formed perpendicular to an existing centriole. An immature centriole contains a ninefold radially symmetric array of single microtubules; mature centrioles consist of a radial array of nine microtubule triplets, doublets, or singlets depending upon the species and cell type [goid 7099] [evidence ISS]; Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells [goid 32465] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a complex of G-protein beta/gamma subunits [goid 31683] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639083-I	ILMN_287430	MILL1	NM_001011931.2	NM_001011931.2		292671	77404357	NM_001011931.2	Mill1	NP_001011931.1	ILMN_1375280	0006650301	S	2047	GAAGCCACAGGTGTGCACTGTGATAAAGCAAGGCCGTGTGGAACTGTTGC	1	+	78101372-78101421	1q21	Rattus norvegicus MHC I like leukocyte 1 (Mill1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_58865431-A	ILMN_287430	MILL1	NM_001011931.2	NM_001011931.2		292671	77404357	NM_001011931.2	Mill1	NP_001011931.1	ILMN_1376883	0004780400	S	1008	TGGTGGCAACATAGAGAAGCGTGCTGTTATTGTGAACACTGTCTCTGGTG	1	+	78096063-78096112	1q21	Rattus norvegicus MHC I like leukocyte 1 (Mill1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_57164102-S	ILMN_300004	RGD1305457	NM_001009430.1	NM_001009430.1		314730	57164102	NM_001009430.1	RGD1305457	NP_001009430.1	ILMN_1371170	0001340148	S	937	CTCGCGTTTGGAGCCACTGGTAAACGACCTAACGCTACGCATTGGGAGGC	7	+	28039887-28039936	7q13	Rattus norvegicus similar to RIKEN cDNA 1700023M03 (RGD1305457), mRNA.				IKIP; MGC108928	IKIP; MGC108928
Rattus norvegicus	RefSeq	GI_62661662-S	ILMN_286412	KCTD9_PREDICTED	XM_001068535.1	XM_001068535.1		364410	109502646	XM_001068535.1	Kctd9_predicted	XP_001068535.1	ILMN_1375166	0000670121	S	2843	GCAGACAGAGGAGCTGAGAGATGCAAACAAAGTGTGCTTGGGAACTGCGG				15p12	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 9 (predicted) (Kctd9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653915-S	ILMN_286216	RGD1565090_PREDICTED	XM_001058331.1	XM_001058331.1		367112	109485010	XM_001058331.1	RGD1565090_predicted	XP_001058331.1	ILMN_1350953	0003520632	S	1066	ATGGGAATTAACGTGGTGGACTCGGCTGTATCTGGATTAGGTGGCTGCCC				8q24	PREDICTED: Rattus norvegicus similar to 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 (predicted) (RGD1565090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663589-S	ILMN_275117	ABT1	XM_001072491.1	XM_001072491.1		306960	109505830	XM_001072491.1	Abt1	XP_001072491.1	ILMN_1372272	0004920292	S	1240	CTGGCTGGAAAGAGTAGACTTGCCTTCCACTAGGGTAGTGGTCTGTGGTC				17q11	PREDICTED: Rattus norvegicus activator of basal transcription 1 (Abt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Any function that supports basal (unregulated) transcription of genes by core RNA polymerase II. Five general transcription factors are necessary and sufficient for such basal transcription in yeast: TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBF) [goid 16251] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51036645-S	ILMN_282474	CCR1	NM_020542.2	NM_020542.2		57301	51036645	NM_020542.2	Ccr1	NP_065417.1	ILMN_1356721	0006040022	S	1507	TGGGGATTCCCAGTCTTGTAGGGTCAAAGGGAACTTTGAGGTCGCTTAGG	8	-	128693950-128693999	8q32	Rattus norvegicus chemokine (C-C motif) receptor 1 (Ccr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEA]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence ISS]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence IEA]; Any process that modulates the rate or extent of fever [goid 31620] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IMP]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Interacting selectively with a C-C chemokine; C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 19957] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62666068-S	ILMN_274976	RGD1307755_PREDICTED	XM_001058192.1	XM_001058192.1		309775	109510149	XM_001058192.1	RGD1307755_predicted	XP_001058192.1	ILMN_1356659	0004570463	S	1277	TCGGCTCCGGCATCTGTACCTAGATGGAAACCCCTGGAACTGCACCTGCA				20q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730521E12 (predicted) (RGD1307755_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865727-A	ILMN_297316	ARHGEF2	NM_001012079.1	NM_001012079.1		310635	58865727	NM_001012079.1	Arhgef2	NP_001012079.1	ILMN_1376651	0002120450	S	4028	AAAGACCTGACACGCATGAGGTGCTGTCTCAGTGCCCGTTCTGAGGACTG	2	+	180775496-180775545	2q34	Rattus norvegicus rho/rac guanine nucleotide exchange factor (GEF) 2 (Arhgef2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95068	MGC95068
Rattus norvegicus	RefSeq	GI_62657995-S	ILMN_65348	MUC20_PREDICTED	XM_221383.3	XM_221383.3		303886	62657995	XM_221383.3	Muc20_predicted	XP_221383.3	ILMN_1357263	0006980279	S	1199	GAGCACGCCAACGGGGCTTGGGGGCCATATTTGCTGTGTTCTACATCATA				11q22	PREDICTED: Rattus norvegicus mucin 20 (predicted) (Muc20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606372-S	ILMN_283623	OLR378	NM_001001286.1	NM_001001286.1		405366	47606372	NM_001001286.1	Olr378	NP_001001286.1	ILMN_1369704	0004200091	S	758	GGACTCTCATCTTCATGTACATACGGAACAGCTCAGGCAAATCTCTACAG	1	-	216913326-216913375	1q43	Rattus norvegicus olfactory receptor 378 (Olr378), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr378	Olr378
Rattus norvegicus	RefSeq	GI_6981183-S	ILMN_271965	AMACR	NM_012816.1	NM_012816.1		25284	6981183	NM_012816.1	Amacr	NP_036948.1	ILMN_1371494	0006760605	S	1169	CTGAAGGCTGTATCTGTACTGGAGAAGGATGCCCACCACTGTCCGTATGG	2	+	60343996-60344045	2q16	Rattus norvegicus alpha-methylacyl-CoA racemase (Amacr), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: (2S)-2-methylacyl-CoA = (2R)-2-methylacyl-CoA [goid 8111] [evidence IDA]; Catalysis of the reaction: (2S)-2-methylacyl-CoA = (2R)-2-methylacyl-CoA [goid 8111] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	Da1-8; Marc1	Da1-8; Marc1
Rattus norvegicus	RefSeq	GI_62665274-S	ILMN_270419	RGD1309394_PREDICTED	XM_001077341.1	XM_001077341.1		292016	109508877	XM_001077341.1	RGD1309394_predicted	XP_001077341.1	ILMN_1355002	0005910242	S	2183	TGCTCCTTCAGGGGACACTGCTTGATTTTTTGTGGGATCTGAATGCTGCC				19q12	PREDICTED: Rattus norvegicus similar to adrift CG5032-PA (predicted) (RGD1309394_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642407-S	ILMN_62928	ELOVL3_PREDICTED	XM_219951.4	XM_219951.4		309449	109460174	XM_219951.4	Elovl3_predicted	XP_219951.3	ILMN_1353628	0004730546	S	1372	TCACAGGGAGTGATCTGTCGGTGGGGAGCCTGAAGGTGTGTGGAGGGATA	1	+	251355234-251355283	1q54	PREDICTED: Rattus norvegicus elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 (predicted) (Elovl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666284-S	ILMN_275181	RGD1311358	NM_001017448.1	NM_001017448.1		294519	62945251	NM_001017448.1	RGD1311358	NP_001017448.1	ILMN_1350240	0000460300	S	1096	CTGAGGAGCTGGAGCAGGAGCTGGAGCACTTAGCCAGGAAGATGGAAAGC	20	-	45732660-45732709	20q12-q13	Rattus norvegicus similar to RIKEN cDNA 2410017P07 (RGD1311358), mRNA.					
Rattus norvegicus	RefSeq	GI_47577262-S	ILMN_300033	OLR396	NM_001000831.1	NM_001000831.1		405120	47577262	NM_001000831.1	Olr396	NP_001000831.1	ILMN_1360604	0006620300	S	599	TCACTGAAGGAGGCTTACTTTTCATCCTGCCTCTGAGTAGCGTCATGGGC	3	+	15648405-15648454	3p11	Rattus norvegicus olfactory receptor 396 (Olr396), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr396	Olr396
Rattus norvegicus	RefSeq	GI_62646033-S	ILMN_291172	PYGB	XM_001057365.1	XM_001057365.1		25739	109471015	XM_001057365.1	Pygb	XP_001057365.1	ILMN_1362179	0007100152	S	3593	CACCACCTTGCATTGCTGTATCTGGTTCGGGATGGGCAGGAAAACGCCTC				3q41	PREDICTED: Rattus norvegicus brain glycogen phosphorylase (Pygb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IDA]	Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase [goid 4645] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence TAS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IC ]		
Rattus norvegicus	RefSeq	GI_62653107-S	ILMN_57493	LOC503173	XM_578697.1	XM_578697.1		503173	62653107	XM_578697.1	LOC503173	XP_578697.1	ILMN_1359327	0000050131	S	206	GCCCCTAGTGAAAATGCCCCTAGGCAGTCTGAAGCAGTGGTTGGAGCTGA					PREDICTED: Rattus norvegicus similar to WNK lysine deficient protein kinase 2 (LOC503173), mRNA.					
Rattus norvegicus	RefSeq	GI_62654120-S	ILMN_292510	RASGRF1	XM_001063783.1	XM_001063783.1		192213	109485081	XM_001063783.1	Rasgrf1	XP_001063783.1	ILMN_1352724	0003130341	S	3790	GGATGAAACCTTTGTGTTGGACGACGAAAGTCTGTATGAGGCCTCCCTCC				8q31	PREDICTED: Rattus norvegicus RAS protein-specific guanine nucleotide-releasing factor 1, transcript variant 2 (Rasgrf1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]	The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that activates or increases the activity of a GTPase of the Ras superfamily [goid 32320] [evidence ISS]; Any process that initiates the activity of an inactive GTPase of the Rac family through the replacement of GDP by GTP [goid 32863] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rac protein signal transduction [goid 35020] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Ras superfamily [goid 5099] [evidence TAS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_47576314-S	ILMN_266628	OLR1516	NM_001000038.1	NM_001000038.1		287520	47576314	NM_001000038.1	Olr1516	NP_001000038.1	ILMN_1374196	0005420471	S	417	GCGCTGCTCACTCTTGGTGATAACCTGTTGGACCCTCACAAACCTTGTTG	10	+	61555479-61555528	10q24	Rattus norvegicus olfactory receptor 1516 (Olr1516), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-61568686-61569657_ORF; Olr1516	ratchr10-61568686-61569657_ORF; Olr1516
Rattus norvegicus	RefSeq	GI_62648284-S	ILMN_61338	LOC500353	XM_575706.1	XM_575706.1		500353	62648284	XM_575706.1	LOC500353	XP_575706.1	ILMN_1363509	0000130528	S	24	CCCAAGCAACAGAGGGGACGCACACTTGGAACCCCAACAAGAGACTTGCT					PREDICTED: Rattus norvegicus LOC500353 (LOC500353), mRNA.					
Rattus norvegicus	RefSeq	GI_48675853-S	ILMN_276786	RALB	NM_053821.2	NM_053821.2		116546	48675853	NM_053821.2	Ralb	NP_446273.1	ILMN_1359738	0000610504	S	2003	ACTGGGGGCTGCCACTGAGCACACACACTCCTCCCATTTTCCAGAAGTGA				13q11	Rattus norvegicus v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) (Ralb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence NAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	dRalb	dRalb
Rattus norvegicus	RefSeq	GI_62665442-S	ILMN_287371	GALNT2_PREDICTED	XM_001054081.1	XM_001054081.1		292090	109509052	XM_001054081.1	Galnt2_predicted	XP_001054081.1	ILMN_1355124	0005390735	S	1582	TGCCGGGAGAACGACAGCAGACAGAAGTGGGAGCAGATCGAAGGCAACTC				19q12	PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (predicted) (Galnt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576236-S	ILMN_294861	OLR1318	NM_001001087.1	NM_001001087.1		405980	47576236	NM_001001087.1	Olr1318	NP_001001087.1	ILMN_1357936	0005360750	S	39	CCTTGTTGGCTTAACAGACAAACCGGAGCTGCAGCTGCCCATGTTCCTCC	8	+	42675946-42675995	8q22	Rattus norvegicus olfactory receptor 1318 (Olr1318), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1318	Olr1318
Rattus norvegicus	RefSeq	GI_62667201-S	ILMN_49308	LOC302333	XM_228458.3	XM_228458.3		302333	62667201	XM_228458.3	LOC302333	XP_228458.3	ILMN_1353256	0000580372	S	1937	GACGCCTCATGACAGTGCTGCTATGCAAGAAACATCAGATTTCATGGACC				Xq32	PREDICTED: Rattus norvegicus similar to Dach2 protein (LOC302333), mRNA.					
Rattus norvegicus	RefSeq	GI_62667359-S	ILMN_279206	RGD1562998_PREDICTED	XR_008560.1	XR_008560.1		302809	109512619	XR_008560.1	RGD1562998_predicted		ILMN_1353730	0000940139	S	811	AGAGCATCCTGGGCTCTTTCAACTTCAACAGCAACTCCCACCGTTCCACC				Xq35	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1562998_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576720-S	ILMN_274105	OLR1734	NM_001001119.1	NM_001001119.1		406018	47576720	NM_001001119.1	Olr1734	NP_001001119.1	ILMN_1352584	0005700435	S	320	CCACAGAATCACTGCTGCTCGCAGTGATGGCATTTGACCGTTTTGTGGCA	20	+	1336896-1336945	20p12	Rattus norvegicus olfactory receptor 1734 (Olr1734), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1734	Olr1734
Rattus norvegicus	RefSeq	GI_62661468-S	ILMN_264859	CKLFSF5_PREDICTED	XM_214187.3	XM_214187.3		290214	62661468	XM_214187.3	Cklfsf5_predicted	XP_214187.1	ILMN_1358050	0004590152	S	914	ACTGAGTTGATGCCCAGGACCACAGAGGGGGACCAGCAGTGATTCCAGGA	15	+	33041338-33041365:33041457-33041470:33041471-33041478	15p13	PREDICTED: Rattus norvegicus chemokine-like factor super family 5 (predicted) (Cklfsf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656394-S	ILMN_64200	STK10	XM_577078.1	XM_577078.1		29398	62656394	XM_577078.1	Stk10	XP_577078.1	ILMN_1373430	0002120551	S	3940	CCTCTCTGGCCCTGGAAGAGGATTTGAACCAGAAGAAGCGGGAACAGGAA				10q12	PREDICTED: Rattus norvegicus serine/threonine kinase 10 (Stk10), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645110-S	ILMN_269384	NEB_PREDICTED	XM_001056398.1	XM_001056398.1		311029	109469862	XM_001056398.1	Neb_predicted	XP_001056398.1	ILMN_1357209	0000360538	S	19745	AGCTCCCACAGCAGCGATCATCCTCAGTTGCCACCCAGCAGACAACACTG				3q12	PREDICTED: Rattus norvegicus nebulin (predicted) (Neb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662903-S	ILMN_281436	RGD1564276_PREDICTED	XM_001070018.1	XM_001070018.1		502093	109504350	XM_001070018.1	RGD1564276_predicted	XP_001070018.1	ILMN_1351344	0001740670	S	2427	TTGGAGCCAGAAACAGAGCGAAGATGGTGCACGGATGGTCCATCTAGCGC				16q12.3	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 2 isoform a (predicted) (RGD1564276_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424169-S	ILMN_281597	MMP3	NM_133523.1	NM_133523.1		171045	19424169	NM_133523.1	Mmp3	NP_598207.1	ILMN_1361666	0006660487	S	1514	CAGCTGACCCTGATAGCTCTTCCTCTGAAACTTGGCGCACTGAAGTGGTT	8	+	4328889-4328938	8q11	Rattus norvegicus matrix metallopeptidase 3 (Mmp3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34862889-S	ILMN_269558	RGD1563259_PREDICTED	XM_576197.1	XM_576197.1		500809	62651848	XM_576197.1	RGD1563259_predicted	XP_576197.1	ILMN_1350752	0007040044	S	828	CGTTCCACATCACCTGTCTGGGCAACTCGAAAACCTGATACATCAAATCC	7	-	17337341-17337390	7q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1563259_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651848-S	ILMN_269558	RGD1563259_PREDICTED	XM_576197.1	XM_576197.1		500809	62651848	XM_576197.1	RGD1563259_predicted	XP_576197.1	ILMN_1364589	0002120605	S	105	TGACGAGTTATTGTACCTCACAACTTGTGTTCACCAGATCACAGGGATGG	7	-	17338064-17338068:17338069-17338113	7q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1563259_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652603-S	ILMN_301789	RGD1562287_PREDICTED	XM_001074199.1	XM_001074199.1		300026	109482433	XM_001074199.1	RGD1562287_predicted	XP_001074199.1	ILMN_1362922	0000870017	S	294	GGAGCACCAGCCTGAGCACAGAGAAGCCACTGTGGGGACTAACAGAAGAG				7q34	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1562287_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638489-A	ILMN_274083	CNKSR3	NM_001012061.1	NM_001012061.1		308113	58865687	NM_001012061.1	Cnksr3	NP_001012061.1	ILMN_1376363	0001780368	S	3259	ATGTTTTCAGATTTACACGTGACCCAGTGTGGCCGTTGGCAGCCTGGGCG	1	-	37865932-37865981	1p11	Rattus norvegicus Cnksr family member 3 (Cnksr3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Magi1; Prp4	Magi1; Prp4
Rattus norvegicus	RefSeq	GI_62656562-S	ILMN_56134	RGD1563715_PREDICTED	XM_573146.2	XM_573146.2		497958	109488555	XM_573146.2	RGD1563715_predicted	XP_573146.2	ILMN_1367706	0001940576	S	2922	GTCTATTGCCAAGAACATTAGCCCTGAGGAGCGGCGCCAAACCCTGCTAC	10	-	63564473-63564522	10q24	PREDICTED: Rattus norvegicus similar to Gem (nuclear organelle) associated protein 4 (predicted) (RGD1563715_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19923688-S	ILMN_286767	DLGAP1	NM_022946.2	NM_022946.2		65040	19923688	NM_022946.2	Dlgap1	NP_075235.2	ILMN_1362457	0002360292	S	4116	GGGTGGGAAGGAATTGGTTCTGTTAGTTTCGTGTTCATCCTGGTGGGGCC	9	+	110018681-110018730	9q38	Rattus norvegicus discs, large (Drosophila) homolog-associated protein 1 (Dlgap1), mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9115257] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11178875] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10488079] [evidence IPI]	Gkap	Gkap
Rattus norvegicus	RefSeq	GI_62641448-S	ILMN_267640	ABCA15_PREDICTED	XM_001075753.1	XM_001075753.1		293442	109462763	XM_001075753.1	Abca15_predicted	XP_001075753.1	ILMN_1358819	0006860435	S	1973	GTGGAGGCATGAAGCGCAAACTCGCCATCATAATAGCCCTGATAGGGGGC				1q35	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 15 (predicted) (Abca15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638535-S	ILMN_54418	LOC365096	XM_344812.2	XM_344812.2		365096	62638535	XM_344812.2	LOC365096	XP_344813.2	ILMN_1374288	0005360064	S	1888	CGGTCACATCTGCTAATGCAACAGGAATGAACGATGGCGCCGCTGCTGTG				1q11	PREDICTED: Rattus norvegicus similar to Ab2-076 (LOC365096), mRNA.					
Rattus norvegicus	RefSeq	GI_62640422-S	ILMN_48261	MPHOSPH10_PREDICTED	XM_238166.4	XM_238166.4		293828	109458867	XM_238166.4	Mphosph10_predicted	XP_238166.2	ILMN_1373299	0006860273	S	1832	AGAGCAACCCAGATCATTCTAAGTCCAGCAGGGCAGCAGCTTCCGAGAAG	1	-	118816304-118816353	1q22	PREDICTED: Rattus norvegicus M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) (Mphosph10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14861865-S	ILMN_276022	VPS52	NM_033097.1	NM_033097.1		25218	14861865	NM_033097.1	Vps52	NP_149088.1	ILMN_1359731	0003290441	S	1919	AGCTGATCCGCGGCTTTGGTAGTTCCTGGAAGGCGTCAGTGGAGTCCCTG	20	-	5075089-5075138	20p12	Rattus norvegicus vacuolar protein sorting 52 homolog (S. cerevisiae) (Vps52), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		Sacm2l; Are1	Sacm2l; Are1
Rattus norvegicus	RefSeq	GI_62641330-S	ILMN_292914	LOC691909	XM_001080060.1	XM_001080060.1		691909	109459452	XM_001080060.1	LOC691909	XP_001080060.1	ILMN_1351450	0006040403	S	1178	TGGAACGGCCCTATCAGACACCTCCTAGCAAAGGCAAGAGCAAGGCCAAG	1	-	186870717-186870766	1q36	PREDICTED: Rattus norvegicus hypothetical protein LOC691909 (LOC691909), mRNA.					
Rattus norvegicus	RefSeq	GI_62641768-S	ILMN_57370	LOC309173	XM_219521.2	XM_219521.2		309173	62641768	XM_219521.2	LOC309173	XP_219521.2	ILMN_1373860	0003870528	S	698	CCTGTCCCGGATGCAGATGGATGGGCTGAAGGGGAGAAAGTATGGAGGGA					PREDICTED: Rattus norvegicus similar to expressed sequence AW491445 (predicted) (LOC309173), mRNA.					
Rattus norvegicus	RefSeq	GI_38454191-S	ILMN_272337	TMEM132D	NM_198727.1	NM_198727.1		288750	38454191	NM_198727.1	Tmem132d	NP_942022.1	ILMN_1356911	0003360026	S	3098	GCCATGCTCACAGATGACAAAGAACAGAAGAGCGAACCCCCTACGTCCCC	12	+	29964326-29964375	12q14	Rattus norvegicus transmembrane protein 132D (Tmem132d), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MOLT	MOLT
Rattus norvegicus	RefSeq	GI_14010864-S	ILMN_294934	HSPB1	NM_031970.1	NM_031970.1		24471	14010864	NM_031970.1	Hspb1	NP_114176.1	ILMN_1374332	0005420739	S	420	GCGTGGTGGAGATCACTGGCAAGCACGAAGAAAGGCAGGATGAACATGGC	12	-	21911654-21911683:21912345-21912364	12q12	Rattus norvegicus heat shock 27kDa protein 1 (Hspb1), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence IDA]	Hsp25; Hsp27	Hsp25; Hsp27
Rattus norvegicus	RefSeq	GI_62661317-S	ILMN_293650	RGD1560278_PREDICTED	XR_008988.1	XR_008988.1		364299	109502328	XR_008988.1	RGD1560278_predicted		ILMN_1372585	0004050121	S	391	GAGAAGACGGTGTATGTCGCCTTGGCTCCTGACCGTGATGCTAGATGCTG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (predicted) (RGD1560278_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605767-S	ILMN_267515	MESDC2	NM_001008345.1	NM_001008345.1		308796	56605767	NM_001008345.1	Mesdc2	NP_001008346.1	ILMN_1357266	0002970193	S	1607	GGAGGAGGGACCAGCAGAATCTTCCAGAGGAGCGGACCTCATCTACGGTA	1	+	140173137-140173186	1q31	Rattus norvegicus mesoderm development candidate 2 (Mesdc2), mRNA.				MGC94688	MGC94688
Rattus norvegicus	RefSeq	GI_19424241-S	ILMN_54675	TRAK2	NM_133560.2	NM_133560.2		171086	75905812	NM_133560.2	Trak2	NP_598244.2	ILMN_1352978	0001090619	S	2833	GGCCCCTCCTGATGTTGGCCAGCTGAAGATGAACTTGGTGGACAGGCTGA	9	-	57477814-57477863	9q31	Rattus norvegicus trafficking protein, kinesin binding 2 (Trak2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 12435728] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 12034717] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 12034717] [evidence IDA]	The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence IPI]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [pmid 12435728] [evidence IDA]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [pmid 12435728] [evidence IDA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [pmid 12435728] [evidence IDA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [pmid 12034717] [evidence NAS]	Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence IMP]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [pmid 12034717] [evidence IDA]	Als2cr3; MGC93214; GRIF-1	Als2cr3; MGC93214; GRIF-1
Rattus norvegicus	RefSeq	GI_14091774-S	ILMN_298279	HAO2	NM_032082.1	NM_032082.1		84029	14091774	NM_032082.1	Hao2	NP_114471.1	ILMN_1374418	0002640037	S	1086	GAGCTAGGTGCATTTTTCTTGGGAGACCAATCCTTTGGGGCCTTGCCTGC	2	-	193534587-193534636	2q34	Rattus norvegicus hydroxyacid oxidase 2 (long chain) (Hao2), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (S)-2-hydroxy-acid + O2 = 2-oxo acid + H2O2 [goid 3973] [evidence IDA]; Catalysis of the reaction: (S)-2-hydroxy-acid + O2 = 2-oxo acid + H2O2 [goid 3973] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Hao3	Hao3
Rattus norvegicus	RefSeq	GI_62646898-S	ILMN_63816	LSM8_PREDICTED	XM_216102.4	XM_216102.4		296913	109471774	XM_216102.4	Lsm8_predicted	XP_216102.1	ILMN_1372150	0003290750	S	343	CTTGGGGAACATCCGAGCAGAACCTCTGAACTCCGTAGCACACTGAGAGC	4	-	44717361-44717365:44717366-44717410	4q21	PREDICTED: Rattus norvegicus LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659050-S	ILMN_63232	RGD1309562_PREDICTED	XM_213811.4	XM_213811.4		288740	109496144	XM_213811.4	RGD1309562_predicted	XP_213811.1	ILMN_1353408	0005130433	S	616	GGCCTCCTGCCACCCTGCACATCAGAGAAGCTACGCAAAACGCACACTAC	12	-	43886717-43886766	12q16	PREDICTED: Rattus norvegicus similar to nitrogen fixation cluster-like (predicted) (RGD1309562_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642715-S	ILMN_270305	RGD1564936_PREDICTED	XM_342169.2	XM_342169.2		361875	62642715	XM_342169.2	RGD1564936_predicted	XP_342170.1	ILMN_1352446	0002940500	S	958	GCTTCTGGGGAGCCAGGGAGCAGAATGCTACGAGCTAAGGAACCAACAGA	2	-	21004643-21004692	2q12	PREDICTED: Rattus norvegicus similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (predicted) (RGD1564936_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643894-S	ILMN_273404	FAM63A	NM_001025118.1	NM_001025118.1		310665	68341970	NM_001025118.1	Fam63a	NP_001020289.1	ILMN_1358140	0004730441	S	1211	ACAGGAGGAGCAGGTGGTGTGGGAGAGCTTGCATAACGTGGATGGGGACA	2	+	190205088-190205137	2q34	Rattus norvegicus family with sequence similarity 63, member A (Fam63a), mRNA.				MGC109471	MGC109471
Rattus norvegicus	RefSeq	GI_9910253-S	ILMN_278801	OLR414	NM_020106.1	NM_020106.1		56821	9910253	NM_020106.1	Olr414	NP_064491.1	ILMN_1356858	0003800450	S	858	CATCTACAGCCTAAGAAATAAGGACATGAAAGGGGCCCTAAAGAGGCTCC	3	-	16377944-16377993	3q11	Rattus norvegicus olfactory receptor 414 (Olr414), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence NAS]	Gust43; Olr414	Gust43; Olr414
Rattus norvegicus	RefSeq	GI_49169996-S	ILMN_296636	E030032D13RIK	NR_002149.1	NR_002149.1		415052	49169996	NR_002149.1	E030032D13Rik		ILMN_1367141	0005690341	S	819	CATGCCTTGGACCTAGCAGGCCCTTGTCCCGCTGCAGGCTAATAAACGTG	20	-	3244469-3244518	20p12	Rattus norvegicus E030032D13Rik gene (E030032D13Rik), non-coding RNA.					
Rattus norvegicus	RefSeq	GI_62646655-S	ILMN_275849	RGD1560887_PREDICTED	XM_001061181.1	XM_001061181.1		499973	109472951	XM_001061181.1	RGD1560887_predicted	XP_001061181.1	ILMN_1360109	0001190372	S	2927	TCTGTTCCCAAAGGATTTCCAGGAGACCACAGACGCCCAGAAGGAGCCCC				4q11	PREDICTED: Rattus norvegicus similar to autophagy 9-like 2 (predicted) (RGD1560887_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652452	ILMN_69947	ATAD2_PREDICTED	XM_235326.3	XM_235326.3		314993	62652452	XM_235326.3	Atad2_predicted	XP_235326.3	ILMN_1650533	0001570390	S	4198	GCTTCTCTGCTATGCTTCTGTGCTAGAGAAAGGAGGGGGAGGAGGAAGGG				7q33	PREDICTED: Rattus norvegicus ATPase family, AAA domain containing 2 (predicted) (Atad2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28460705-S	ILMN_282964	TAAR7A	NM_175585.1	NM_175585.1		294125	28460705	NM_175585.1	Taar7a	NP_783175.1	ILMN_1369870	0002030563	S	721	CAGCAGGCTCAGAACATCGAGAAAATGAGCAAACAGACCACCAGGGCCTC	1	+	21977838-21977887	1p12	Rattus norvegicus trace-amine-associated receptor 7a (Taar7a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta8	Ta8
Rattus norvegicus	RefSeq	GI_62652415-S	ILMN_68131	RGD1307179_PREDICTED	XM_216918.4	XM_216918.4		299900	109480737	XM_216918.4	RGD1307179_predicted	XP_216918.2	ILMN_1365881	0006110594	S	796	GCAGCAGGGTGCGGAAGGATGATGGGTGCTGTGGCTACTCAGATGTCAGA	7	+	88174517-88174538:88174539-88174566	7q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D530033C11 (predicted) (RGD1307179_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652663-S	ILMN_57769	LOC500898	XM_576300.1	XM_576300.1		500898	62652663	XM_576300.1	LOC500898	XP_576300.1	ILMN_1359551	0005700195	S	1629	CCTCAGGTACAGGTGACGAGGAGAGCAAGAAGCCACCCTTATCCCAGCTC					PREDICTED: Rattus norvegicus similar to LOC443645 protein (LOC500898), mRNA.					
Rattus norvegicus	RefSeq	GI_62658071-I	ILMN_286238	LOC681467	XM_001057746.1	XM_001057746.1		681467	109494625	XM_001057746.1	LOC681467	XP_001057746.1	ILMN_1376000	0002060594	S	569	TTCCGCCGCATTGTGGAGTGATGGTCTGAGTGGGAGCGTAGAGTTCTCCC					PREDICTED: Rattus norvegicus similar to Beta crystallin S (Gamma crystallin S) (LOC681467), mRNA.					
Rattus norvegicus	RefSeq	GI_62650728-S	ILMN_51543	LOC314162	XM_234218.3	XM_234218.3		314162	62650728	XM_234218.3	LOC314162	XP_234218.3	ILMN_1365652	0000770435	S	764	CGAACAGAACCTCGAACTGATGACCGCACAGCTCTCCAACTTCAAGCGAG					PREDICTED: Rattus norvegicus similar to C330016H24Rik protein (LOC314162), mRNA.					
Rattus norvegicus	RefSeq	GI_62639069-S	ILMN_58730	RGD1563892_PREDICTED	XM_574375.2	XM_574375.2		499088	109458264	XM_574375.2	RGD1563892_predicted	XP_574375.2	ILMN_1353084	0002940632	S	2531	AGAGGAAATGGCACTGTCTTCGGGGCTTTGAGGGTCAAGTAGGAGTTGCC	1	+	77213205-77213254	1q21	PREDICTED: Rattus norvegicus similar to MGC15476 protein (predicted) (RGD1563892_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718048-S	ILMN_271282	LOC316130	XM_001061015.1	XM_001061015.1		316130	109486615	XM_001061015.1	LOC316130	XP_001061015.1	ILMN_1362335	0003440040	S	1612	CCAGCCCTGTGGTGTAGAAGCAGGAGGGTCAGTTCAAAGCCTGACTGCCA					PREDICTED: Rattus norvegicus similar to mannose-6-phosphate receptor binding protein 1 (LOC316130), mRNA.					
Rattus norvegicus	RefSeq	GI_13540653-S	ILMN_69214	GRB2	NM_030846.1	NM_030846.1		81504	13540653	NM_030846.1	Grb2	NP_110473.1	ILMN_1352046	0005890278	S	2011	GTCCACGAGTACGAATGGCAGGATTCGGGGGCTGGTTCGATGGTTGCATC				10q32.3	Rattus norvegicus growth factor receptor bound protein 2 (Grb2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 8316835] [evidence EXP]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IPI]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence IPI]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence IEA]; Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence IPI]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence ISS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]; Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108668	MGC108668
Rattus norvegicus	RefSeq	GI_62643055-I	ILMN_52004	PIP3AP_PREDICTED	XM_574868.1	XM_574868.1		310155	62643055	XM_574868.1	Pip3ap_predicted	XP_574868.1	ILMN_1375691	0006380372	S	2501	GTGGCATGTCCCCAGAAGTGTGCCATCCACAGAAGAAGAGGAAGATTGCC				2q16	PREDICTED: Rattus norvegicus phosphatidylinositol-3-phosphatase associated protein (predicted) (Pip3ap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667240-S	ILMN_293982	LOC501618	XM_001068786.1	XM_001068786.1		501618	109512334	XM_001068786.1	LOC501618	XP_001068786.1	ILMN_1360073	0002230136	S	128	CCAGCACATTCCACTGCAAGGACCGGAGTTGGGAAAAGGCTGCCCGGAAA				Xq34	PREDICTED: Rattus norvegicus LRRGT00179 (LOC501618), mRNA.					
Rattus norvegicus	RefSeq	GI_62654658-S	ILMN_68823	RGD1565959_PREDICTED	XM_238575.3	XM_238575.3		301230	109485735	XM_238575.3	RGD1565959_predicted	XP_238575.1	ILMN_1364308	0000360592	S	424	CCGGAGAAGGAAGAAGCGCGAGCCACACTCACACACCCACACTTCCAATC	9	+	8295146-8295195	9q12	PREDICTED: Rattus norvegicus RGD1565959 (predicted) (RGD1565959_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660390-S	ILMN_276243	RGD1564808_PREDICTED	XM_001068586.1	XM_001068586.1		289584	109500464	XM_001068586.1	RGD1564808_predicted	XP_001068586.1	ILMN_1372642	0006350575	S	1048	CGTCGTTCACTGTGGAAGTGGTCCTAACCGTGGGCATTACATCACCATCG				14p11	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 46 (predicted), transcript variant 2 (RGD1564808_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646745-S	ILMN_264426	RGD1560299_PREDICTED	XM_578220.1	XM_578220.1		502721	62646745	XM_578220.1	RGD1560299_predicted	XP_578220.1	ILMN_1368638	0005860441	S	381	TTTCACTCCTTCCCGGAGGAACTTTGGGCAGAGAATTGCTTCTCATGACC	4	-	17079071-17079120	4q12	PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (predicted) (RGD1560299_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658945-S	ILMN_57409	RGD1305685	XM_341084.3	XM_341084.3		360811	109495977	XM_341084.3	RGD1305685	XP_341085.2	ILMN_1373062	0006380647	S	2924	GGAAGCTGGGTGCTGTAGAGCCAATGTGTGCTGATGTGTGTCCGAGTGTG	12	-	36233492-36233541	12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13089 (RGD1305685), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758873-S	ILMN_264898	RAB28	NM_053978.1	NM_053978.1		117049	16758873	NM_053978.1	Rab28	NP_446430.1	ILMN_1373434	0000460270	S	1054	CTTGAGAGCACTGATGGTGGAAGTTATCAAGAAGGTGTTCCTTTGCTGGC	14	+	74481053-74481102	14q21	Rattus norvegicus RAB28, member RAS oncogene family (Rab28), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576514-S	ILMN_291363	OLR1624	NM_001000089.1	NM_001000089.1		290001	47576514	NM_001000089.1	Olr1624	NP_001000089.1	ILMN_1359108	0005390541	S	678	AGGACATTCCTCCGAAGGGAAGAGCAAAGCCATCTCTACGTGCACCACCC	15	-	26395667-26395716	15p14	Rattus norvegicus olfactory receptor 1624 (Olr1624), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1624; ratchr15-26412094-26411168_ORF	Olr1624; ratchr15-26412094-26411168_ORF
Rattus norvegicus	RefSeq	GI_31343536-S	ILMN_262877	SLC38A2	NM_181090.2	NM_181090.2		29642	31343536	NM_181090.2	Slc38a2	NP_851604.1	ILMN_1359139	0004920050	S	4522	CAGGCCACTGTGGCTTGTTGGCAGGGAGTGCTATGCCAGTTTCAATGAAA	7	-	135365212-135365261	7q35	Rattus norvegicus solute carrier family 38, member 2 (Slc38a2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence ISS]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence ISS]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Ata2; Atrc2; Sat2; Snat2	Ata2; Atrc2; Sat2; Snat2
Rattus norvegicus	RefSeq	GI_6980987-S	ILMN_279423	NR3C1	NM_012576.1	NM_012576.1		24413	6980987	NM_012576.1	Nr3c1	NP_036708.1	ILMN_1363519	0005130039	S	5795	CCAGCTGCTAGGACAGGGTCGGCGCTTCTGTCTAGAATATGCCTGAAAGG	18	-	32371978-32372027	18p11	Rattus norvegicus nuclear receptor subfamily 3, group C, member 1 (Nr3c1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6111] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence IMP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids [goid 31946] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IDA]; Any series of molecular signals generated as a consequence of a glucocorticoid binding to its receptor [goid 42921] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IMP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Maintenance of transcription by remodelling of chromatin into an 'open configuration'. Once established, this regulation is mitotically stable and is maintained over many cell divisions. It is also heritable [goid 48096] [pmid 12917342] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IPI]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a glucocorticoid to initiate a change in cell activity [goid 4883] [evidence IMP]; Combining with a glucocorticoid to initiate a change in cell activity [goid 4883] [evidence IEA]; Combining with a glucocorticoid to initiate a change in cell activity [goid 4883] [evidence ISS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence TAS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IDA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence TAS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IPI]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a glucocorticoid to initiate a change in cell activity [goid 4883] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [pmid 12917342] [evidence IPI]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [pmid 12917342] [evidence IPI]	GR; Gcr; Grl	GR; Gcr; Grl
Rattus norvegicus	RefSeq	GI_61556954-S	ILMN_287141	ABCD4	XM_001059055.1	XM_001059055.1		299196	109479657	XM_001059055.1	Abcd4	XP_001059055.1	ILMN_1372443	0001580546	S	1927	TGCCCACAGACAAGGAAGCCTGATGAGCCAGGAAGGAGCCACAGGTTCAC				6q31	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 4 (Abcd4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_34867398-S	ILMN_287141	ABCD4	XM_001059055.1	XM_001059055.1		299196	109479657	XM_001059055.1	Abcd4	XP_001059055.1	ILMN_1355783	0002970039	S	606	CAGGCTGGCTTGGGCCTGTGAGCATCTTTGGATATTTCATCCTGGGTACC				6q31	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 4 (Abcd4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62078766-S	ILMN_279740	RGD1309326	NM_001014018.1	NM_001014018.1		308568	62078766	NM_001014018.1	RGD1309326	NP_001014040.1	ILMN_1369210	0003610040	S	1825	AGATCTGGATTTAGTGGAGGGGTGAGGTGGGCAGCCCTGGAACTTTTGCC	1	+	94719935-94719984	1q22	Rattus norvegicus similar to RIKEN cDNA 2410002F23 (RGD1309326), mRNA.					
Rattus norvegicus	RefSeq	GI_62645213-S	ILMN_282622	RGD1562106_PREDICTED	XR_007536.1	XR_007536.1		502630	109470009	XR_007536.1	RGD1562106_predicted		ILMN_1359278	0001410605	S	40	AAAGAAAAAGCAGGTCCGCGTGGCGAGCAAGTCCTGGCACAGACTCAGGT				3q21	PREDICTED: Rattus norvegicus similar to histone deacetylase 1 (predicted) (RGD1562106_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644453-A	ILMN_283878	PDLIM5	NM_053326.1	NM_053326.1		64353	16758027	NM_053326.1	Pdlim5	NP_445778.1	ILMN_1376808	0002480402	S	1472	CCTGAATGTGGCCGGTGCCAGAGGAAGATCCTTGGGGAAGTCATCAATGC	2	-	240179675-240179722:240182024-240182025	2q44	Rattus norvegicus PDZ and LIM domain 5 (Pdlim5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]	The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence NAS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Functions to provide a physical support for the assembly of a multiprotein receptor signaling complex [goid 30159] [evidence NAS]; Interacting selectively with actinin, any member of a family of proteins that crosslink F-actin [goid 42805] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IMP]	Enh1; Enh	Enh1; Enh
Rattus norvegicus	RefSeq	GI_62641363-S	ILMN_283232	RGS10	XM_001079315.1	XM_001079315.1		54290	109462949	XM_001079315.1	Rgs10	XP_001079315.1	ILMN_1356835	0007050068	S	627	CTTCACCCCCATGGAGCAGAGGGATGGACTCTCAGACTGTGTGCAGGATG				1q36	PREDICTED: Rattus norvegicus regulator of G-protein signalling 10 (Rgs10), mRNA.		Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663512-S	ILMN_269319	RGD1564586_PREDICTED	XR_008661.1	XR_008661.1		498747	109505762	XR_008661.1	RGD1564586_predicted		ILMN_1359254	0003390341	S	625	AAGGCAGACAAGGGTCTCAGAAGCTCCTGGCTGAGGCTCGCAGGTCTAAG				17p11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1564586_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642738-S	ILMN_58737	LOC499511	XM_574836.1	XM_574836.1		499511	62642738	XM_574836.1	LOC499511	XP_574836.1	ILMN_1367229	0006840017	S	806	TCCAGAGACAAGGGAAGGCTGCTTTGGAGATGATTGCAGGGCTAGACGGG					PREDICTED: Rattus norvegicus similar to betaine-homocysteine methyltransferase 2 (LOC499511), mRNA.					
Rattus norvegicus	RefSeq	GI_47575851-S	ILMN_286519	SDC2	NM_013082.2	NM_013082.2		25615	47575851	NM_013082.2	Sdc2	NP_037214.1	ILMN_1361950	0001780411	S	2743	GGCCCTTCCAAAGCTGCACAATGCCCTCAATCACGGAGGCTGAGAATGTA	7	+	68405981-68406030	7q22	Rattus norvegicus syndecan 2 (Sdc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]	HSPG	HSPG
Rattus norvegicus	RefSeq	GI_62649245-S	ILMN_268877	AFAF	NM_001039345.1	NM_001039345.1		500502	86129597	NM_001039345.1	Afaf	NP_001034434.1	ILMN_1359679	0004060451	S	717	CCTACGCGACAAAACTTGTGAGAGCCAATACTCCGTCAACCCAGAGCTGG	5	-	115214915-115214959:115215867-115215871	5q33	Rattus norvegicus Acrosome formation associated factor (Afaf), mRNA.	The membrane that surrounds the acrosomal lumen. The acrosome is a special type of lysosome in the head of a spermatozoon that contains acid hydrolases and is concerned with the breakdown of the outer membrane of the ovum during fertilization [goid 2080] [evidence ISS]; The membrane that surrounds the acrosomal lumen. The acrosome is a special type of lysosome in the head of a spermatozoon that contains acid hydrolases and is concerned with the breakdown of the outer membrane of the ovum during fertilization [goid 2080] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Afaf	Afaf
Rattus norvegicus	RefSeq	GI_62638590-S	ILMN_57101	RGD1560991_PREDICTED	XM_577689.2	XM_577689.2		502227	109457732	XM_577689.2	RGD1560991_predicted	XP_577689.2	ILMN_1373599	0001230253	S	269	CCAGGAGCGAGTAGGGGAACTGATGGACCAGAATGCCTTTTCTCTTACCC	1	+	40864261-40864310	1q11	PREDICTED: Rattus norvegicus similar to general transcription factor IIH, polypeptide 5 (predicted) (RGD1560991_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527310-S	ILMN_266280	PLEKHM1	NM_001009677.1	NM_001009677.1		303584	57527310	NM_001009677.1	Plekhm1	NP_001009677.1	ILMN_1360981	0000450288	S	4752	GCCTAGGAGGTAGAGTCCTCCCGCTACCTGGACTGTGAGCATTAGAGCTG	10	-	92555783-92555832	10q32.1	Rattus norvegicus pleckstrin homology domain containing, family M (with RUN domain) member 1 (Plekhm1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94075	MGC94075
Rattus norvegicus	RefSeq	GI_47777711-S	ILMN_294996	OLR886	NM_001001382.1	NM_001001382.1		302254	47777711	NM_001001382.1	Olr886	NP_001001382.1	ILMN_1350377	0001170433	S	896	AAAAAATTGCATTCCTCTCAAAGGTGCAAAAAACAAAGAATACTACCTAG				7q11	Rattus norvegicus olfactory receptor 886 (Olr886), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr886	Olr886
Rattus norvegicus	RefSeq	GI_62650756-S	ILMN_269555	RGD1560952_PREDICTED	XR_009355.1	XR_009355.1		500660	109479460	XR_009355.1	RGD1560952_predicted		ILMN_1358607	0004540711	S	453	GCCCACTTTTGTGAGGACTAACGGGAAGGAGCCTGAGCTGCTGGAGTCCA				6q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1560952_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656928-S	ILMN_55475	ARL12_PREDICTED	XM_220907.4	XM_220907.4		303505	109488916	XM_220907.4	Arl12_predicted	XP_220907.4	ILMN_1369521	0006450707	S	1450	GGCCAGCCATGAAGTTCCACAACCACCCCAACCACTCCACCTACACAGAG	10	-	86689798-86689847	10q31	PREDICTED: Rattus norvegicus ADP-ribosylation factor-like 12 (predicted) (Arl12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036659-S	ILMN_268902	NUCKS1	NM_022799.2	NM_022799.2		64709	51036659	NM_022799.2	Nucks1	NP_073636.1	ILMN_1372669	0002630575	S	1468	TCCCGGGTGTGGAGGGAGGCCGTCCTGGAACTCAGTGTACTCGCTGTTCT	6	+	142905529-142905578	6q33	Rattus norvegicus nuclear casein kinase and cyclin-dependent kinase substrate 1 (Nucks1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence TAS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence TAS]; Interacting selectively with single-stranded DNA [goid 3697] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62662734-S	ILMN_56059	RGD1564308_PREDICTED	XM_577523.2	XM_577523.2		502086	109503391	XM_577523.2	RGD1564308_predicted	XP_577523.2	ILMN_1362591	0004590035	S	761	CAGCTGACCCTTATGTGGTGAAAGTGGGAAAGGTGATGCCTTCGAAAGGT	16	+	49593392-49593441	16q11	PREDICTED: Rattus norvegicus similar to LOC495042 protein (predicted) (RGD1564308_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651253-S	ILMN_271681	LOC691318	XM_001077680.1	XM_001077680.1		691318	109478742	XM_001077680.1	LOC691318	XP_001077680.1	ILMN_1357613	0006650619	S	1862	AGCTGCCTCAGGACCCCCACACCGAGAAAGCCTTGGAAGCTCACTGCAGA	6	+	135298594-135298643	6q32	PREDICTED: Rattus norvegicus similar to Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform (PP2A, B subunit, B gamma isoform) (PP2A, B subunit, B56 gamma isoform) (PP2A, B subunit, PR61 gamma isoform) (PP2A, B subunit, R5 gamma isoform) (PP2A, B su... (LOC691318), mRNA.					
Rattus norvegicus	RefSeq	GI_62661370	ILMN_273026	LOC364236	XR_005801.1	XR_005801.1		364236	109500185	XR_005801.1	LOC364236		ILMN_1649846	0004570685	S	171	AATTTGCCCCATATGATGAGAACTGGTTCTACACGAGCTGCTTCCACAGC	14|NW_047442.1	+	37057-37106		PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (LOC364236), mRNA.					
Rattus norvegicus	RefSeq	GI_13242258-S	ILMN_299655	HTR6	NM_024365.1	NM_024365.1		64354	13242258	NM_024365.1	Htr6	NP_077341.1	ILMN_1355737	0000360300	S	1856	GGTCTCAGAGCCGGGCCATTTGGTTCAGGTCAGTAGGAAAGCAATCTGTC	5|NW_047748.1	-	16328-16377		Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 6 (Htr6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide [goid 7187] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641126-S	ILMN_48087	LOC499242	XM_574535.1	XM_574535.1		499242	62641126	XM_574535.1	LOC499242	XP_574535.1	ILMN_1363816	0005860066	S	2468	ACTGTAGTTTGTCTTGTGTCCTTTTGTGTGAAATTGTTATGTCTAGCAAG					PREDICTED: Rattus norvegicus similar to RGD1310870_predicted protein (LOC499242), mRNA.					
Rattus norvegicus	RefSeq	GI_62640808-S	ILMN_275803	RGD1310022	XM_001060165.1	XM_001060165.1		293058	109458921	XM_001060165.1	RGD1310022	XP_001060165.1	ILMN_1351424	0000940609	S	295	GACGGTCATGGGGTAACAACAACTACCCACAGCAGAGACCAGAGCCCTAC	1	+	137985697-137985746	1q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610204K14, transcript variant 1 (RGD1310022), mRNA.					
Rattus norvegicus	RefSeq	GI_62638253-S	ILMN_274217	RGD1309903_PREDICTED	XM_001072524.1	XM_001072524.1		292947	109460491	XM_001072524.1	RGD1309903_predicted	XP_001072524.1	ILMN_1365323	0002260082	S	6672	CTCAACCAGATTCAGATCCTTCCAGACCCGACCTTCACTGCTCTCCAGCC				1p12	PREDICTED: Rattus norvegicus similar to mKIAA1244 protein (predicted) (RGD1309903_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652139-S	ILMN_274687	MDM1	NM_001017459.1	NM_001017459.1		314859	62945273	NM_001017459.1	Mdm1	NP_001017459.1	ILMN_1360593	0001090528	S	2493	GCAGGTGTCGGGGTTGCTGTGAGACGTGTGAAGGTCATCTGTCTGGAGAA	7	+	57481510-57481559	7q22	Rattus norvegicus Mdm1 nuclear protein homolog (mouse) (Mdm1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47577702-S	ILMN_296244	OLR635	NM_001000646.1	NM_001000646.1		404842	47577702	NM_001000646.1	Olr635	NP_001000646.1	ILMN_1359861	0003520487	S	665	CTCTGAGAAACCACAGTGCAGAAGGAAGACGAAAGGCCTTGTCTACATGC	3	+	72402068-72402117	3q24	Rattus norvegicus olfactory receptor 635 (Olr635), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr635	Olr635
Rattus norvegicus	RefSeq	GI_62543528-S	ILMN_287126	OLFM2	NM_001015017.1	NM_001015017.1		313783	62543528	NM_001015017.1	Olfm2	NP_001015017.1	ILMN_1360810	0002760070	S	1537	AGGTGCTGTACAACGTCACCCTCTTCCACGTCATCAGCACTGCCGGGGAC	8	-	19685844-19685893	8q13	Rattus norvegicus olfactomedin 2 (Olfm2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			MGC109424	MGC109424
Rattus norvegicus	RefSeq	GI_62645393-S	ILMN_56747	LOC499835	XM_575175.1	XM_575175.1		499835	62645393	XM_575175.1	LOC499835	XP_575175.1	ILMN_1367597	0000520403	S	976	AAGAGACAAGCTGGAGGCCCCGGAGAGAGTGCCCTCAGCTTTGGCACCGA					PREDICTED: Rattus norvegicus similar to MGC4707 protein isoform 4 (LOC499835), mRNA.					
Rattus norvegicus	RefSeq	GI_9506962-S	ILMN_281388	PPM2C	NM_019372.1	NM_019372.1		54705	9506962	NM_019372.1	Ppm2c	NP_062245.1	ILMN_1349827	0001690541	S	1922	GACCTCAGGGTACCTGCACTTGAGGCAGCTTGTTTCCTTACCCAGGTGTC	5	-	26234829-26234878	5q13	Rattus norvegicus protein phosphatase 2C, magnesium dependent, catalytic subunit (Ppm2c), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence TAS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IC ]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IC ]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IMP]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the removal of a serine- or threonine-bound phosphate group from a protein; action dependent on magnesium [goid 4724] [evidence IDA]; Catalysis of the reaction: [pyruvate dehydrogenase (lipoamide)] phosphate + H2O = [pyruvate dehydrogenase (lipoamide)] + phosphate [goid 4741] [evidence IDA]; Catalysis of the reaction: [pyruvate dehydrogenase (lipoamide)] phosphate + H2O = [pyruvate dehydrogenase (lipoamide)] + phosphate [goid 4741] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IMP]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IMP]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	PDP1	PDP1
Rattus norvegicus	RefSeq	GI_16758157-S	ILMN_49407	UFD1L	NM_053418.2	NM_053418.2		84478	77812693	NM_053418.2	Ufd1l	NP_445870.1	ILMN_1372253	0003850017	S	974	CTCTGGAGAAGGACAGTCGCTGCGGAAGAAGGGAAGAAAGCCCTAAGTGC	11|NW_047364.1	-	216705-216709:216710-216754		Rattus norvegicus ubiquitin fusion degradation 1 like (yeast) (Ufd1l), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758565-S	ILMN_294675	RAP2A	NM_053741.1	NM_053741.1		114560	16758565	NM_053741.1	Rap2a	NP_446193.1	ILMN_1364155	0001400347	S	383	GGCTACACCACCTCCTTCCGGGGCTCAGACTTGCGGGCTTTGTTTCACAA	15	+	105570476-105570525	15q24	Rattus norvegicus RAS related protein 2a? (Rap2a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651543-S	ILMN_69170	LOC503093	XM_578613.1	XM_578613.1		503093	62651543	XM_578613.1	LOC503093	XP_578613.1	ILMN_1369202	0002690465	S	25	AGCTGTACCAGTCTTGGGCTGAGCTGGTGAGGCCTGAGGCCACCATAAAA					PREDICTED: Rattus norvegicus similar to Ig H-chain V-region precursor (LOC503093), mRNA.					
Rattus norvegicus	RefSeq	GI_6978598-S	ILMN_302374	CADPS	NM_013219.1	NM_013219.1		26989	6978598	NM_013219.1	Cadps	NP_037351.1	ILMN_1364620	0003060070	S	4787	CCCTGGGGTCCTCTGTAGAGCTGTTTCTTTCTGTGGAAAGTAGTGGATCC	15	+	14319699-14319748	15p16	Rattus norvegicus Ca++-dependent secretion activator (Cadps), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence ISS]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of calcium ion-dependent exocytosis [goid 45956] [evidence IMP]; The regulated release of catecholamines by a cell or group of cells. The catecholamines are a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 50432] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Caps1; Caps2; Caps	Caps1; Caps2; Caps
Rattus norvegicus	RefSeq	GI_51036660-S	ILMN_56459	AGTR1A	NM_030985.3	NM_030985.3		24180	71896556	NM_030985.3	Agtr1a	NP_112247.2	ILMN_1364972	0000110239	S	1906	CTGTCCCCAGACAATGCTAGCCAGTGGTGTACTTATGTAGCAGTGTTACC	17	-	40629554-40629603	17p12	Rattus norvegicus angiotensin II receptor, type 1 (AT1A) (Agtr1a), mRNA.				AT1A; AT1R; AT1	AT1A; AT1R; AT1
Rattus norvegicus	RefSeq	GI_62646673-S	ILMN_53123	LOC499977	XM_575331.1	XM_575331.1		499977	62646673	XM_575331.1	LOC499977	XP_575331.1	ILMN_1362514	0001990500	S	1089	GTGTTTTCTGTACTGTGACCTGGTGTGGTTGACCGTGCAGTGCCCTGATC				4q11	PREDICTED: Rattus norvegicus similar to lipoma HMGIC fusion partner-like 3 (LOC499977), mRNA.					
Rattus norvegicus	RefSeq	GI_55742712-S	ILMN_265834	ECM1	NM_053882.1	NM_053882.1		116662	55742712	NM_053882.1	Ecm1	NP_446334.1	ILMN_1362266	0006350066	S	1552	GTGGTGAGGAGGAGAAACTGGCTTTCATTGAGGATCTCTGTGGTCCCCGG	2	-	190525443-190525479:190525790-190525802	2q34	Rattus norvegicus extracellular matrix protein 1 (Ecm1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718435-S	ILMN_59983	LOC367550	XM_346206.2	XM_346206.2		367550	62718435	XM_346206.2	LOC367550	XP_346207.2	ILMN_1355814	0003840128	S	172	AGGAGGAAGCTTATAACAATGTGGTGGAAAGCGCACAGGGGGACGCCCCA					PREDICTED: Rattus norvegicus similar to HIV-1 tat interactive protein 2, homolog (LOC367550), mRNA.					
Rattus norvegicus	RefSeq	GI_62667447-A	ILMN_268573	L1CAM	XM_001053015.1	XM_001053015.1		50687	109462306	XM_001053015.1	L1cam	XP_001053015.1	ILMN_1376861	0002480563	S	4470	TTGGCTAGACTTTTCCCTGCTGCCACCATACCCCAGGACCCCTTAGCAGC				Xq37	PREDICTED: Rattus norvegicus L1 cell adhesion molecule (L1cam), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; The attachment of one cell to another cell via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits [goid 33631] [evidence ISS]; The attachment of a cell to a second cell of the identical type via adhesion molecules [goid 34109] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with sialic acid, any of a variety of N- or O- substituted derivatives of neuraminic acid, a nine carbon monosaccharide. Sialic acids often occur in polysaccharides, glycoproteins, and glycolipids in animals and bacteria [goid 33691] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661316-S	ILMN_52135	NP_MAPPED	XM_214155.4	XM_214155.4		290029	109501551	XM_214155.4	Np_mapped	XP_214155.2	ILMN_1368463	0005290142	S	1251	TCTGGGCTCCTCTGCTTTCCCTAAAGCCACAAAGACCAAAGACCAACCCC	15	+	26937323-26937372	15p14	PREDICTED: Rattus norvegicus nucleoside phosphorylase (mapped) (Np_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62661169-S	ILMN_269763	LOC498464	XM_573721.1	XM_573721.1		498464	62661169	XM_573721.1	LOC498464	XP_573721.2	ILMN_1353784	0006980538	S	1	GTTGTGGTGACACCAACTGCCTGAGCGATTTCCCTTCATTTCCTAATGGG	15	+	19523275-19523319:19523320-19523324	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498464), mRNA.					
Rattus norvegicus	RefSeq	GI_34869583-S	ILMN_269763	LOC498464	XM_573721.1	XM_573721.1		498464	62661169	XM_573721.1	LOC498464	XP_573721.2	ILMN_1368333	0001990347	S	552	CCCTCGAAGGAGGAATGGACTTGGAGAAGTGGAGGAAGTTGGAGCCTGGC	15	+	19526234-19526283	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498464), mRNA.					
Rattus norvegicus	RefSeq	GI_62662104-S	ILMN_269763	LOC498464	XM_573721.1	XM_573721.1		498464	62661169	XM_573721.1	LOC498464	XP_573721.2	ILMN_1355764	0000870056	S	515	ACGTGGACTATAATCTGGGGCTCTCTTCTGATCAGGACCCTCGAAGGAGG	15	+	19526197-19526246	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498464), mRNA.					
Rattus norvegicus	RefSeq	GI_55741786-S	ILMN_296067	STX7	NM_021869.2	NM_021869.2		60466	55741786	NM_021869.2	Stx7	NP_068641.2	ILMN_1363223	0002190292	S	1679	GTGTCCCTCAGAACACTCATTAGACATGTATCTTTGGGTCCCGTCTTCGC	1	-	21722246-21722295	1p12	Rattus norvegicus syntaxin 7 (Stx7), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence IDA]; The lipid bilayer surrounding an early endosome [goid 31901] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IPI]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643579-S	ILMN_280060	SERPINI2	XM_001068611.1	XM_001068611.1		171149	109466838	XM_001068611.1	Serpini2	XP_001068611.1	ILMN_1374154	0004810338	S	833	GGTTCTCTGAGCTGCATGAAGAGGAAGTGGAAGTCAGCCTCCCTCGATTT				2q32	PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade I, member 2 (Serpini2), mRNA.		Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IDA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62666549-S	ILMN_59148	LOC367733	XM_346270.2	XM_346270.2		367733	62666549	XM_346270.2	LOC367733	XP_346271.2	ILMN_1372565	0003440458	S	2515	GCGACAGTGGGTCTGAGGGTGAAAGGGGTCAAATCCGTGAGAAGGGTAGT					PREDICTED: Rattus norvegicus similar to X-linked retinitis pigmentosa GTPase regulator (mRpgr) (LOC367733), mRNA.					
Rattus norvegicus	RefSeq	GI_62654540-S	ILMN_277977	ZDHHC3	NM_001039014.1	NM_001039014.1		301081	84781730	NM_001039014.1	Zdhhc3	NP_001034103.1	ILMN_1360792	0000070161	S	1665	CCTACCCCAGTTTCTGCCCTTTCCCAGCAAGATTTCAGTCATTGGGAGGG	8	-	127830611-127830660	8q32	Rattus norvegicus zinc finger, DHHC domain containing 3 (Zdhhc3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence ISS]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649221-S	ILMN_63730	LOC500495	XM_575859.1	XM_575859.1		500495	62649221	XM_575859.1	LOC500495	XP_575859.1	ILMN_1364301	0003060112	S	1674	CCTGCACTGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500495), mRNA.					
Rattus norvegicus	RefSeq	GI_6981543-S	ILMN_299101	SLC34A1	NM_013030.1	NM_013030.1		25548	6981543	NM_013030.1	Slc34a1	NP_037162.1	ILMN_1366195	0001400301	S	1980	GACTATTGCCTGGAGGCGAGGGACGGGATTTTTACAGAGCCCACAGTAGA	17	-	15263337-15263386	17p14	Rattus norvegicus solute carrier family 34 (sodium phosphate), member 1 (Slc34a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence ISS]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA];  [goid 15321] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15321] [evidence IEA]	Slc17a2; NAPI2A	Slc17a2; NAPI2A
Rattus norvegicus	RefSeq	GI_62639417-S	ILMN_54072	ANKRD27_PREDICTED	XM_341843.2	XM_341843.2		361555	62639417	XM_341843.2	Ankrd27_predicted	XP_341844.2	ILMN_1355150	0007100504	S	1459	GCCAGTGGGATTTGCGCAGTTAGTAGCCTGCTCCATTAATCCCCGCCATC				1q21	PREDICTED: Rattus norvegicus ankyrin repeat domain 27 (VPS9 domain) (predicted) (Ankrd27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650034-S	ILMN_298115	UBE4B_PREDICTED	XM_233679.3	XM_233679.3		298652	62650034	XM_233679.3	Ube4b_predicted	XP_233679.3	ILMN_1368431	0000380053	S	5367	TTACATGCCCGGACAAACACCACCACGTAACCACGTAGGCGCACTCGAGC	5	-	166406041-166406090	5q36	PREDICTED: Rattus norvegicus ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) (predicted) (Ube4b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47087094-S	ILMN_274745	TRIM39	NM_213562.1	NM_213562.1		309591	47087094	NM_213562.1	Trim39	NP_998727.1	ILMN_1350124	0000110091	S	2770	GAGGGTATTCAGTTCCTCCTACCACCTCAACAGGACTTTGTCCACTCTCC	20	+	2105690-2105739	20p12	Rattus norvegicus tripartite motif-containing 39 (Trim39), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rnf23	Rnf23
Rattus norvegicus	RefSeq	GI_62653409-S	ILMN_51738	LOC503192	XM_578715.1	XM_578715.1		503192	62653409	XM_578715.1	LOC503192	XP_578715.1	ILMN_1358768	0006370603	S	1492	GGAAGGCTTTCTACCGCAAGTCAGACCTCACAGTGCATCAGAGGACACAC				8q13	PREDICTED: Rattus norvegicus similar to Zinc finger protein ZFP (LOC503192), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652343-S	ILMN_64539	SLC25A32_PREDICTED	XM_235359.4	XM_235359.4		315023	109480715	XM_235359.4	Slc25a32_predicted	XP_235359.4	ILMN_1366496	0005420619	S	1440	CTCTCCCTGGAGTGGGTACCATCTGATAATGTTGAAGCCGATAGCCACTG	7	-	74651493-74651542	7q22	PREDICTED: Rattus norvegicus solute carrier family 25, member 32 (predicted) (Slc25a32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789374-S	ILMN_279660	PTPRC	XM_001063971.1	XM_001063971.1		24699	109498711	XM_001063971.1	Ptprc	XP_001063971.1	ILMN_1365809	0001770324	S	3790	CCAGCTCTAACCCCGAGCTCATAGGAACGGATTCGAGTGGGACAACGCAA				13q13	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, C (Ptprc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence TAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [pmid 3158393] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Any process that stops, prevents, or reduces the rate of T cell mediated cytotoxicity [goid 1915] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence ISS]; The chemical reactions and pathways resulting in the formation of immunoglobulin [goid 2378] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of T cell mediated immunity [goid 2711] [evidence ISS]; Any process that modulates the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin [goid 2923] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin [goid 2925] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence TAS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IDA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues [goid 31953] [evidence ISS]; A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle [goid 33261] [evidence ISS]; The attachment of a cell to a cell of a different type via adhesion molecules [goid 34113] [evidence ISS]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; Any process that modulates the frequency, rate or extent of B cell differentiation [goid 45577] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation [goid 45588] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50732] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B cell [goid 50855] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell [goid 50857] [evidence ISS]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that stops, prevents, or reduces the rate of T cell mediated cytotoxicity [goid 1915] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell [goid 50857] [evidence ISS]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS];  [goid 5001] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 19887] [evidence TAS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit [goid 43395] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642693-S	ILMN_56556	CETN3	XM_342168.3	XM_342168.3		170895	109464228	XM_342168.3	Cetn3	XP_342169.1	ILMN_1361791	0004230725	S	510	GCTCCGGGCCATGATCGAGGAGTTTGATAAGGACGGCGATGGGGAGATAA	2	+	9919322-9919368:9921974-9921976	2q11	PREDICTED: Rattus norvegicus centrin 3 (Cetn3), mRNA.	A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence IEA]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence ISS]; A short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum that is similar in structure to a centriole. The basal body serves as a nucleation site for axoneme growth [goid 5932] [evidence ISS]; A 9+0 cilium that forms the portion of the axoneme traversing the boundary between the photoreceptor inner and outer segments [goid 32391] [evidence ISS]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a complex of G-protein beta/gamma subunits [goid 31683] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659446-S	ILMN_48398	LOC498246	XM_573469.1	XM_573469.1		498246	62659446	XM_573469.1	LOC498246	XP_573469.1	ILMN_1359678	0006840368	S	825	TGATCTCTAGCTCCCAAGGGAAATTCATTCCAAACCTGAAGAGCTCCCAG				13q21	PREDICTED: Rattus norvegicus similar to RGS13 (LOC498246), mRNA.					
Rattus norvegicus	RefSeq	GI_62659982-S	ILMN_264334	IRF6_PREDICTED	XM_001067431.1	XM_001067431.1		364081	109499279	XM_001067431.1	Irf6_predicted	XP_001067431.1	ILMN_1356810	0004590441	S	3912	AGGGCTCCGCATCTATGTCCTGCTTGACCGACTGCAAACTTGGAAAGTGG				13q27	PREDICTED: Rattus norvegicus interferon regulatory factor 6 (predicted) (Irf6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667597-S	ILMN_264852	MAGEA10_PREDICTED	XR_007284.1	XR_007284.1		293832	109462265	XR_007284.1	Magea10_predicted		ILMN_1375190	0005910398	S	1115	ACCCAGTGTGGTATGCAGAGGCTTTGAGAGATGAGGAAGAGAGGGAATAG				Xq37	PREDICTED: Rattus norvegicus melanoma antigen family A, 10 (predicted) (Magea10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560126-S	ILMN_276696	KCNK12	NM_022292.1	NM_022292.1		64119	11560126	NM_022292.1	Kcnk12	NP_071628.1	ILMN_1363963	0003060026	S	1589	AGCTCATCTCAATGCGCGACCTCACGGCGTCCAACAAGGTGTCGCTGGCA	6	-	11282066-11282115	6q12	Rattus norvegicus potassium channel, subfamily K, member 12 (Kcnk12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	THIK-2	THIK-2
Rattus norvegicus	RefSeq	GI_62655791-S	ILMN_54733	LOC497667	XM_579667.1	XM_579667.1		497667	62655791	XM_579667.1	LOC497667	XP_579667.1	ILMN_1370541	0005690161	S	2322	GGAGTCTACAGCTCACCTCTTGAGTCTTGACCTTGTAACTTGCCTTGGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_139339 (LOC497667), mRNA.					
Rattus norvegicus	RefSeq	GI_62665734-S	ILMN_290140	SLC26A8_PREDICTED	XM_001078473.1	XM_001078473.1		309646	109509844	XM_001078473.1	Slc26a8_predicted	XP_001078473.1	ILMN_1363168	0003440541	S	3411	CAACGAGGACGCATGGTAGGTGACTCCAAAAAGCAGGCAGAGTAGCTCGG				20p12	PREDICTED: Rattus norvegicus solute carrier family 26, member 8 (predicted) (Slc26a8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47523961-S	ILMN_301785	OLR1714	NM_214456.1	NM_214456.1		294175	47523961	NM_214456.1	Olr1714	NP_999621.1	ILMN_1361921	0000540152	S	555	CTGTTCTGACACTCACCTCAATGAAATCCTGATGATGGCTTTGGCTGGGG	20	-	1102496-1102545	20p12	Rattus norvegicus olfactory receptor 1714 (Olr1714), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or28; ratchr20-1103100-1102171_ORF; Olr1714	Or28; ratchr20-1103100-1102171_ORF; Olr1714
Rattus norvegicus	RefSeq	GI_62717966-S	ILMN_58297	LOC367436	XM_346138.2	XM_346138.2		367436	62717966	XM_346138.2	LOC367436	XP_346139.2	ILMN_1368672	0000670551	S	43	CACAGTACAGAAAGCCAGTGGACTGGGTCATGGTTGGCCGAGCAGTGGAG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367436), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62657606-S	ILMN_58689	LOC363741	XM_344004.2	XM_344004.2		363741	62657606	XM_344004.2	LOC363741	XP_344005.2	ILMN_1367631	0006940315	S	978	CCACTGGGTTACAGTGTTGGCTGTGGCTATGGTAGCACCTACTCTCCAGT				11q11	PREDICTED: Rattus norvegicus similar to ribosomal protein (LOC363741), mRNA.					
Rattus norvegicus	RefSeq	GI_62648564-S	ILMN_52877	LOC500397	XM_575756.1	XM_575756.1		500397	62648564	XM_575756.1	LOC500397	XP_575756.1	ILMN_1366960	0000770594	S	1722	GAGAACACAAATGCCAGCCCAGATTACTGTATCCAGCAAAACTCTCAATA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500397), mRNA.					
Rattus norvegicus	RefSeq	GI_62638800-S	ILMN_67384	LOC499059	XM_574339.1	XM_574339.1		499059	62638800	XM_574339.1	LOC499059	XP_574339.1	ILMN_1351552	0001740427	S	1047	GGACCAATGTTGCTAGGGTCGGCAATCAATCTTTCTTCCCAGGATTTAGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (LOC499059), mRNA.					
Rattus norvegicus	RefSeq	GI_62646661-S	ILMN_276176	RGD1562906_PREDICTED	XM_001061478.1	XM_001061478.1		499975	109472955	XM_001061478.1	RGD1562906_predicted	XP_001061478.1	ILMN_1354295	0003870465	S	1884	CCTGGCAGGAGCCTGGTGTCTTGAGTTCTGAAGGCTCTCTTTTGACTGTG				4q11	PREDICTED: Rattus norvegicus similar to Drctnnb1a (predicted) (RGD1562906_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659179	ILMN_50462	LOC501847	XM_577260.1	XM_577260.1		501847	62659179	XM_577260.1	LOC501847	XP_577260.1	ILMN_1649919	0006650411	S	124	TGCTCCGTGCTCCTTGAGGTCGGTGAAGCAGCCAACCAGCCATCTCCGGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004A20 (LOC501847), mRNA.					
Rattus norvegicus	RefSeq	GI_42476238-S	ILMN_290578	RGD1303142	NM_201560.1	NM_201560.1		296346	42476238	NM_201560.1	RGD1303142	NP_963854.1	ILMN_1371021	0002760520	S	1227	GTTCTGAGGGCTGAAGAAACCATAATGACTGGAGACTGGCAGCAGTGGGG	3	-	154298563-154298612	3q42	Rattus norvegicus oxidative stress responsive gene (RGD1303142), mRNA.				osr1	osr1
Rattus norvegicus	RefSeq	GI_62718524-S	ILMN_66221	LOC501414	XM_580191.1	XM_580191.1		501414	62718524	XM_580191.1	LOC501414	XP_580191.1	ILMN_1351623	0003450037	S	580	CGGAGGGACACGATCCTGGGTGACACGGAGAGAGAAGACTGCCCTGAATT					PREDICTED: Rattus norvegicus LOC501414 (LOC501414), mRNA.					
Rattus norvegicus	RefSeq	GI_16758983-S	ILMN_277531	DDX52	NM_053525.1	NM_053525.1		85432	16758983	NM_053525.1	Ddx52	NP_445977.1	ILMN_1374434	0004610288	S	2082	CAAGTGTGAAGGAAAGTGTGATGCATGCTGTGGAGAGGCATCTGGAACAG	10	+	72245342-72245391	10q26	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 (Ddx52), mRNA.		Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence TAS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a RNA helix [goid 3724] [evidence NAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Rok1	Rok1
Rattus norvegicus	RefSeq	GI_40538859-S	ILMN_264507	ACO2	NM_024398.2	NM_024398.2		79250	40538859	NM_024398.2	Aco2	NP_077374.2	ILMN_1352530	0000130403	S	2968	AACGCTAGTGGCGGTGGCACACACCTGGCAGATGGATCTGAGTTCAAGTC	7	+	120266644-120266693	7q34	Rattus norvegicus aconitase 2, mitochondrial (Aco2), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence ISS]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle [goid 6101] [evidence ISS]; The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle [goid 6101] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence IDA]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence ISS]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence ISS]; Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate [goid 3994] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665509-S	ILMN_52322	LOC498970	XM_574257.1	XM_574257.1		498970	62665509	XM_574257.1	LOC498970	XP_574257.1	ILMN_1354797	0003130056	S	4577	GCGTCCTCTGCTACAGCGGGTCCGAGTCCTAACAGCATACTCGTATCCAG					PREDICTED: Rattus norvegicus similar to EG:49E4.1 (LOC498970), mRNA.					
Rattus norvegicus	RefSeq	GI_62643602-S	ILMN_55528	RGD1561499_PREDICTED	XM_226972.4	XM_226972.4		310256	109464707	XM_226972.4	RGD1561499_predicted	XP_226972.4	ILMN_1368468	0006760021	S	1378	CTAGACTGCTTTACCCAGGACCGCAGAAGGGACATCCGGTTTGACCACGG	2	+	117141624-117141673	2q24	PREDICTED: Rattus norvegicus similar to leucine rich repeat containing 31 (predicted) (RGD1561499_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27229311-S	ILMN_295414	CTHRC1	NM_172333.1	NM_172333.1		282836	27229311	NM_172333.1	Cthrc1	NP_758836.1	ILMN_1361478	0005270079	S	756	GCCATCTGGGTCGGCACCTGTTCAGATTACCCCAAAGGAGACGCTTCTAC	7	+	74639866-74639915	7q22	Rattus norvegicus collagen triple helix repeat containing 1 (Cthrc1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IMP]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718636-S	ILMN_50526	LOC314431	XM_234525.4	XM_234525.4		314431	109513811	XM_234525.4	LOC314431	XP_234525.3	ILMN_1367055	0005670403	S	629	GTGAGCTGGCAAGGAAGCTGGAGAAAGCTGGCCTCAATGGCTTCAAAGGC	Un|NW_047933.1	-	673624-673673		PREDICTED: Rattus norvegicus similar to PNPK6288 (LOC314431), mRNA.					
Rattus norvegicus	RefSeq	GI_55926225-S	ILMN_298503	ALOX5AP	NM_017260.2	NM_017260.2		29624	55926225	NM_017260.2	Alox5ap	NP_058956.1	ILMN_1357059	0005550019	S	621	TGTAGATGCTGTAAATCTAGCGGCCCTCGGGGCTCCGCCGCATCCGTTAA	12	-	6246074-6246123	12p11	Rattus norvegicus arachidonate 5-lipoxygenase activating protein (Alox5ap), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence TAS]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA];  [goid 19372] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Increases the activity of an enzyme [goid 8047] [evidence IEP]; Increases the activity of an enzyme [goid 8047] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654947-S	ILMN_296049	PDCL3	NM_001025709.1	NM_001025709.1		316348	71043633	NM_001025709.1	Pdcl3	NP_001020880.1	ILMN_1369781	0004010537	S	1501	CAGAGCTGTTCTTGGCTCTAAGGTCCTGTTAGGTTCGGCTTGGGGGACTG	9	+	38012448-38012497	9q21	Rattus norvegicus phosducin-like 3 (Pdcl3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process by which an organism has an effect on an organism of a different species [goid 44419] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116329	MGC116329
Rattus norvegicus	RefSeq	GI_22219455-S	ILMN_271094	LOC259245	NM_147213.1	NM_147213.1		259245	22219455	NM_147213.1	LOC259245	NP_671746.1	ILMN_1350838	0006770110	S	420	CAAGGACGGGGAAACCTTCCAGCTGATGAATCTCTTCGGCAGAACAAAGG	5	-	78682696-78682708:78683056-78683092	5q24	Rattus norvegicus alpha-2u globulin PGCL5 (LOC259245), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242313-S	ILMN_290245	ASPA	NM_024399.1	NM_024399.1		79251	13242313	NM_024399.1	Aspa	NP_077375.1	ILMN_1351659	0005080112	S	1167	TCTTTTCCTCAGCACCTTGGCCCCATGCCTCAAGCAGTAAGCATCCAGGC	10	-	60178829-60178878	10q24	Rattus norvegicus aspartoacylase (Aspa), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of oligodendrocytes in the central nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22010] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of oligodendrocyte differentiation [goid 48714] [evidence IMP]	Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Catalysis of the reaction: N-acyl-L-aspartate + H2O = a fatty acid anion + L-aspartate [goid 19807] [evidence TAS]; Catalysis of the reaction: N-acyl-L-aspartate + H2O = a fatty acid anion + L-aspartate [goid 19807] [evidence IEA]	MGC93408; MGC93407	MGC93408; MGC93407
Rattus norvegicus	RefSeq	GI_62654082-S	ILMN_62417	TBC1D2B	XM_236472.4	XM_236472.4		315880	109483782	XM_236472.4	Tbc1d2b	XP_236472.4	ILMN_1366709	0002450091	S	3221	AGCGGGACACTAGCCCTGACAAAGGCGAGCTGGTTAGCGATGAGGAGGAA	8	-	95113164-95113213	8q31	PREDICTED: Rattus norvegicus TBC1 domain family, member 2B (Tbc1d2b), mRNA.					
Rattus norvegicus	RefSeq	GI_15147225-S	ILMN_276720	GRIA3	NM_032990.1	NM_032990.1		29628	15147225	NM_032990.1	Gria3	NP_116785.1	ILMN_1368538	0002810364	S	2639	GCCTGCTCCTGCCACCAACACTCAGAATTACGCTACATACAGAGAAGGCT	X	-	3459734-3459783	Xq11	Rattus norvegicus glutamate receptor, ionotropic, AMPA3 (alpha 3) (Gria3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density [goid 32279] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released [goid 43083] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [pmid 11836517] [evidence TAS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 10027300] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [pmid 11348590] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [pmid 10027300] [evidence IPI]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate, or extent of receptor recyling [goid 1919] [pmid 11348590] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [pmid 15269270] [evidence IEP]	Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA];  [goid 4971] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9697854] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10027300] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 10027300] [evidence IPI]	GLUR3	GLUR3
Rattus norvegicus	RefSeq	GI_62664955-S	ILMN_273047	RGD1305466	XM_001063722.1	XM_001063722.1		291922	109508473	XM_001063722.1	RGD1305466	XP_001063722.1	ILMN_1372285	0005860672	S	2380	TCACTCTTCAGTGGGCGGCTTGTGCGCTCAGATGTAGCCATGACTGGGGA				19p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300002A08 (RGD1305466), mRNA.					
Rattus norvegicus	RefSeq	GI_16758229-S	ILMN_280059	MLYCD	NM_053477.1	NM_053477.1		85239	16758229	NM_053477.1	Mlycd	NP_445929.1	ILMN_1357689	0006980300	S	1766	GAGAGTTGGCAGTCATGTCCTCTATTCGGGAGAGGGCTAAGGTCTGTGCC	19	+	49652771-49652820	19q12	Rattus norvegicus malonyl-CoA decarboxylase (Mlycd), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]	The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated [goid 6085] [evidence IDA]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence IDA]; Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation [goid 31998] [evidence IDA]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: malonyl-CoA = acetyl-CoA + CO2 [goid 50080] [evidence IDA]; Catalysis of the reaction: malonyl-CoA = acetyl-CoA + CO2 [goid 50080] [evidence IEA]; Catalysis of the reaction: malonyl-CoA = acetyl-CoA + CO2 [goid 50080] [evidence IDA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: malonyl-CoA = acetyl-CoA + CO2 [goid 50080] [evidence IEA]	Mcd	Mcd
Rattus norvegicus	RefSeq	GI_62664705-S	ILMN_56794	LOC291406	XM_225691.3	XM_225691.3		291406	62664705	XM_225691.3	LOC291406	XP_225691.3	ILMN_1358754	0004560332	S	4268	GTCTCCTGACCAGACACCTTAGACCTGAGAGCCGTTGCACCAGAGCAGAC				18q12.3	PREDICTED: Rattus norvegicus similar to Hypothetical zinc finger protein KIAA0222 (predicted) (LOC291406), mRNA.					
Rattus norvegicus	RefSeq	GI_13929101-S	ILMN_266551	APBA2	NM_031780.1	NM_031780.1		83610	13929101	NM_031780.1	Apba2	NP_113968.1	ILMN_1352620	0002450070	S	2555	AGAAGCCAGGACAAAGCCCTGACCCCTGACCCCGCAGCCCAACCAAGAAC	1	+	119156421-119156470	1q22	Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, member 2 (Apba2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phosphatidylinositol-4,5-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 5546] [evidence NAS]	Mint2	Mint2
Rattus norvegicus	RefSeq	GI_31542232-S	ILMN_277722	BNIP3	NM_053420.2	NM_053420.2		84480	31542232	NM_053420.2	Bnip3	NP_445872.1	ILMN_1356892	0002230576	S	1233	GGGTGGGCAGTTGTGTTACGCCTTTATCTCTCTGCTGAGTGAAGTTCTAC	1	-	198683308-198683357	1q41	Rattus norvegicus BCL2/adenovirus E1B 19 kDa-interacting protein 3 (Bnip3), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 31307] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 8634] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 8634] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 45837] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence IDA]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	MGC93043	MGC93043
Rattus norvegicus	RefSeq	GI_51036681-S	ILMN_298271	APTX	NM_148889.2	NM_148889.2		259271	51036681	NM_148889.2	Aptx	NP_683687.1	ILMN_1369321	0004920338	S	1214	AGATGGGACTTGCGAACTCTTGAAGCTGCCTCTCCGTTGCCATGAGTGTC	5	-	58060363-58060412	5q22	Rattus norvegicus aprataxin (Aptx), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The repair of single strand breaks in DNA. Repair of such breaks is mediated by the same enzyme systems as are used in base excision repair [goid 12] [evidence ISS]; The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase [goid 6266] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with damaged DNA [goid 3684] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: 2-phosphoglycolate + H2O = glycolate + phosphate [goid 8967] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: 5'-AMP-DNA + H2O = AMP + DNA; nucleophilic release of a covalently linked adenylate residue from a DNA strand, leaving a 5' phosphate terminus [goid 33699] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62638716-S	ILMN_63184	LOC502258	XM_577719.1	XM_577719.1		502258	62638716	XM_577719.1	LOC502258	XP_577719.1	ILMN_1369467	0000940154	S	1091	TGGAGGCCTTAGACAATGTAAGACCAGCCACAATGGAGATCCTGTTCCAG					PREDICTED: Rattus norvegicus similar to SPBPJ4664.02 (LOC502258), mRNA.					
Rattus norvegicus	RefSeq	GI_47577882-S	ILMN_273304	OLR1166	NM_001000867.1	NM_001000867.1		405164	47577882	NM_001000867.1	Olr1166	NP_001000867.1	ILMN_1364087	0001450168	S	45	CCATCTCATGGCAATCTCAGAGGATCCAGACCTGCAGCTTGTCTTCTTTG	8	+	18447251-18447300	8q13	Rattus norvegicus olfactory receptor 1166 (Olr1166), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1166	Olr1166
Rattus norvegicus	RefSeq	GI_52138609-S	ILMN_274035	MEF2D	NM_030860.2	NM_030860.2		81518	52138609	NM_030860.2	Mef2d	NP_110487.2	ILMN_1350881	0007050594	S	1717	CATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTG	2	+	180246243-180246292	2q34	Rattus norvegicus myocyte enhancer factor 2D (Mef2d), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC93400	MGC93400
Rattus norvegicus	RefSeq	GI_62664944	ILMN_275772	PAPD5_PREDICTED	XM_001066974.1	XM_001066974.1		307745	109508505	XM_001066974.1	Papd5_predicted	XP_001066974.1	ILMN_1651034	0006590270	S	4704	CAGCATTGTATTCGTGAGTACTGTGTATCTGGACTGAGCAGCGAGCAACG				19p11	PREDICTED: Rattus norvegicus PAP associated domain containing 5 (predicted) (Papd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576466-S	ILMN_300663	OLR1600	NM_001000086.1	NM_001000086.1		289260	47576466	NM_001000086.1	Olr1600	NP_001000086.1	ILMN_1354889	0003990673	S	520	CACTTTTTCTGCCATATGAGGGCAGTTCTGAGGCTGTCATGCACAGACAG	13	+	90065936-90065985	13q24	Rattus norvegicus olfactory receptor 1600 (Olr1600), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1600	Olr1600
Rattus norvegicus	RefSeq	GI_62647777-S	ILMN_271553	PODXL2_PREDICTED	XM_001072254.1	XM_001072254.1		297433	109473834	XM_001072254.1	Podxl2_predicted	XP_001072254.1	ILMN_1355505	0001500333	S	1738	AGCAAGCGCGACCCTGAGGACTCTGACGTGTTCGAGGAGGACACTCACCT				4q34	PREDICTED: Rattus norvegicus podocalyxin-like 2 (predicted) (Podxl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648042-S	ILMN_285992	IRAK2	NM_001025422.1	NM_001025422.1		362418	70794739	NM_001025422.1	Irak2	NP_001020593.1	ILMN_1373683	0002690403	S	1767	GCTTGTGCAGGCCCACAGCCACCTCAGGAAGCTACAGAGACTTCATGGAA	4	+	149595936-149595966:149598316-149598334	4q42	Rattus norvegicus interleukin-1 receptor-associated kinase 2 (Irak2), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The stimulation of the activity of NF-kappaB-inducing kinase through phosphorylation at specific residues [goid 7250] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_9506888-S	ILMN_264870	TPSAB1	NM_019322.1	NM_019322.1		54271	9506888	NM_019322.1	Tpsab1	NP_062195.1	ILMN_1349103	0006380358	S	810	CAACGTCCACATTGTCCGTGACGACATGCTGTGTGCTGGGAATGAAGGAC	10	-	14592025-14592074	10q12	Rattus norvegicus tryptase alpha/beta 1 (Tpsab1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	TPSB1; Mcpt7	TPSB1; Mcpt7
Rattus norvegicus	RefSeq	GI_62652990-S	ILMN_273949	DBX2	XM_001053826.1	XM_001053826.1		541457	109481228	XM_001053826.1	Dbx2	XP_001053826.1	ILMN_1367450	0001660440	S	1052	GGGTCCCAGAAGCAGGTTCACTCCGAGGTGTCTTGTACCTGTGTCCTGAG	7	-	134213473-134213522	7q35	PREDICTED: Rattus norvegicus developing brain homeobox 2 (Dbx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659269-S	ILMN_267131	MCM6	XM_001055953.1	XM_001055953.1		29685	109498571	XM_001055953.1	Mcm6	XP_001055953.1	ILMN_1356031	0005570398	S	2646	ACCTGGGCAGCACTGAGACCGTTTCTGGAGCGATGCTTGGGGACAGTTGA				13q12	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) (Mcm6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication [goid 6268] [evidence ISS]; The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix [goid 3678] [evidence ISS]; Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664902-S	ILMN_264525	LOC685989	XM_001066079.1	XM_001066079.1		685989	109513221	XM_001066079.1	LOC685989	XP_001066079.1	ILMN_1373554	0000380113	S	399	CTATCGGTAAGTACTGGTCAGAAGGGCCCATCACTTGTGGAATGGCCATG	Un|NW_047874.1	-	30225-30265:30266-30274		PREDICTED: Rattus norvegicus hypothetical protein LOC685989 (LOC685989), mRNA.					
Rattus norvegicus	RefSeq	GI_62650117-S	ILMN_263306	RGD1565761_PREDICTED	XM_001074331.1	XM_001074331.1		313688	109477672	XM_001074331.1	RGD1565761_predicted	XP_001074331.1	ILMN_1365268	0005700086	S	1014	GGCATTCCTAGTGACCTGTGAGAATGACCCCCTGCGTGATGATGCCTTGC				5q36	PREDICTED: Rattus norvegicus similar to novel protein similar to esterases (predicted) (RGD1565761_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959241-A	ILMN_266397	BHLHB3	NM_133303.1	NM_133303.1		117095	18959241	NM_133303.1	Bhlhb3	NP_579837.1	ILMN_1376398	0005390390	S	2845	GGGGCGGACTTGGTGAAATGTTTGCACTTTGGTCACAATGCTTCTACTGC	4|NW_047708.1	+	382990-383003		Rattus norvegicus basic helix-loop-helix domain containing, class B3 (Bhlhb3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The synchronization of a circadian rhythm to environmental time cues such as light [goid 9649] [evidence IDA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEP]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence NAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Sharp1; SHARP-1; Dec2	Sharp1; SHARP-1; Dec2
Rattus norvegicus	RefSeq	GI_62664499-S	ILMN_61113	CDX1_PREDICTED	XM_344691.3	XM_344691.3		364883	109506682	XM_344691.3	Cdx1_predicted	XP_344692.3	ILMN_1359405	0001780593	S	450	GGAGTTTCACTACAGTCGGTACATCACCATTCGGCGCAAGTCAGAGCTGG	18	-	56984016-56984065	18q12.1	PREDICTED: Rattus norvegicus caudal type homeo box 1 (predicted) (Cdx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866804-S	ILMN_53845	RGD1308195_PREDICTED	XM_235419.3	XM_235419.3		315074	109480885	XM_235419.3	RGD1308195_predicted	XP_235419.1	ILMN_1359203	0000430075	S	259	GGGCCCTCATGTTTCCATCGTTTGCTGCCAGTCTAATCTCTGCAACAGGG	7	-	112857777-112857826	7q34	PREDICTED: Rattus norvegicus similar to secreted Ly6/uPAR related protein 2 (predicted) (RGD1308195_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655929-S	ILMN_62600	LOC303016	XM_220273.3	XM_220273.3		303016	62655929	XM_220273.3	LOC303016	XP_220273.3	ILMN_1355452	0002640373	S	4728	ATATGATTCCTGCCATTTGCTGCTAAACCTGGGCTGGTCAGAGCGCCGCA				10q12	PREDICTED: Rattus norvegicus similar to adult retina protein (predicted) (LOC303016), mRNA.					
Rattus norvegicus	RefSeq	GI_62639144-S	ILMN_274378	ETHE1_PREDICTED	XM_001076689.1	XM_001076689.1		292710	109461415	XM_001076689.1	Ethe1_predicted	XP_001076689.1	ILMN_1354927	0006450605	S	656	TTTCTACTGTGGAGGAGGAACGGACTCTGAACCCACGGCTCACTCTCAGC				1q21	PREDICTED: Rattus norvegicus ethylmalonic encephalopathy 1 (predicted) (Ethe1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641549-S	ILMN_295883	RGD1307177_PREDICTED	XM_001057645.1	XM_001057645.1		365380	109463104	XM_001057645.1	RGD1307177_predicted	XP_001057645.1	ILMN_1349325	0001770438	S	1554	GACGGATCAGACCCCATGCACCCCCGAAGATGACCTAGAAGAGGGTATGG				1q41	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0555 (predicted) (RGD1307177_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641840-S	ILMN_61149	LOC499311	XM_579947.1	XM_579947.1		499311	62641840	XM_579947.1	LOC499311	XP_579947.1	ILMN_1356115	0000450497	S	1106	TGGCCAGATGGACAAGCTGGATGCCAAGGTGATGCCCTTTCTCTGAGGAA					PREDICTED: Rattus norvegicus hypothetical gene supported by AJ006522 (LOC499311), mRNA.					
Rattus norvegicus	RefSeq	GI_62660925-S	ILMN_65092	FANCL_PREDICTED	XM_223701.3	XM_223701.3		305600	62660925	XM_223701.3	Fancl_predicted	XP_223701.3	ILMN_1365295	0001090605	S	2031	GACTGGCTGAGAGGGCTGAGCAGCAGTCGACAGAGTTTCAACGTCTTCTT				14q22	PREDICTED: Rattus norvegicus Fanconi anemia, complementation group L (predicted) (Fancl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650417-S	ILMN_270354	EMILIN1_PREDICTED	XM_001064749.1	XM_001064749.1		298845	109478999	XM_001064749.1	Emilin1_predicted	XP_001064749.1	ILMN_1348800	0002940537	S	3321	GAACCCGAGGGACTGGAGAATAAACCTGTGGCCGAAAGTCAGCCTAGCCC				6q14	PREDICTED: Rattus norvegicus elastin microfibril interfacer 1 (predicted) (Emilin1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651467-S	ILMN_65505	TDRD9_PREDICTED	XM_234559.3	XM_234559.3		299343	62651467	XM_234559.3	Tdrd9_predicted	XP_234559.3	ILMN_1368973	0006510050	S	5081	TCAGTGGCATGAGAAACCCTACGAGTGGAACCAGGTGGACCCAAGGCTGG				6q32	PREDICTED: Rattus norvegicus tudor domain containing 9 (predicted) (Tdrd9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34868505-S	ILMN_55542	LOC366373	XM_345533.1	XM_345533.1		366373	34868505	XM_345533.1	LOC366373	XP_345534.1	ILMN_1369185	0000070369	S	292	CGAATGAAGGTGCAGACGAGGGGTGGGGGCAGTCTGTCTATCATACTTCC					PREDICTED: Rattus norvegicus similar to Histidine triad nucleotide-binding protein 1 (Adenosine 5-monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1) (LOC366373), mRNA.					
Rattus norvegicus	RefSeq	GI_62078464-S	ILMN_294580	TMEM39A	NM_001013865.1	NM_001013865.1		288092	62078464	NM_001013865.1	Tmem39a	NP_001013887.1	ILMN_1371027	0004570170	S	1764	GCAGGGCATACTCCTACCCCTCAACAGCTACGGACTCAAGGCAGACCAAG	11	-	63938313-63938362	11q21	Rattus norvegicus transmembrane protein 39a (Tmem39a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1306421	RGD1306421
Rattus norvegicus	RefSeq	GI_62654784-S	ILMN_296959	LOC501110	NM_001024361.1	NM_001024361.1		501110	66730520	NM_001024361.1	LOC501110	NP_001019532.1	ILMN_1357460	0000670487	S	1540	CAGACATTCTGTTATCTCCACTTCCTGCTCAGCTATTGGCTGTCGCATGC	9	-	20091705-20091754	9q13	Rattus norvegicus similar to Glutathione S-transferase A1 (GTH1) (HA subunit 1) (GST-epsilon) (GSTA1-1) (GST class-alpha) (LOC501110), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644974-S	ILMN_262540	RABEPK	NM_001024871.1	NM_001024871.1		296649	67846007	NM_001024871.1	Rabepk	NP_001020042.1	ILMN_1375097	0005360019	S	1389	AGCCTCCAAGATGAGAAAGGGGACGCTGCTGAGAAACCAGAGACCCGGAG	3	-	13790943-13790992	3p11	Rattus norvegicus Rab9 effector protein with kelch motifs (Rabepk), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			9530020d24rik; RGD1310612	9530020d24rik; RGD1310612
Rattus norvegicus	RefSeq	GI_62647050-S	ILMN_291019	RGD1564680_PREDICTED	XM_001055302.1	XM_001055302.1		312115	109473113	XM_001055302.1	RGD1564680_predicted	XP_001055302.1	ILMN_1356066	0003440408	S	3387	CCAAGATGCGAGGAGGCCCTGAAGCCTGGAAACTGTGGCGACTATGTGGT				4q21	PREDICTED: Rattus norvegicus similar to matrilin 2 precursor (predicted) (RGD1564680_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661352-S	ILMN_291916	RGD1561198_PREDICTED	XM_001073796.1	XM_001073796.1		305855	109502309	XM_001073796.1	RGD1561198_predicted	XP_001073796.1	ILMN_1359928	0003140176	S	353	CTGAGAAGAAAGCTGCTGGCAAAGGGATGGGGGTGCCCTACTGCATCATC				15p14	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1561198_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654468-S	ILMN_58493	CTDSPL_PREDICTED	XM_217293.4	XM_217293.4		301056	109484082	XM_217293.4	Ctdspl_predicted	XP_217293.4	ILMN_1364469	0001450019	S	1175	ACACGGAGCTGTTGGACCTCATCCCGTTCTTCGAGGGCCTAAGCAGGGAA	8	+	123989995-123990044	8q32	PREDICTED: Rattus norvegicus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (predicted) (Ctdspl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38016149-S	ILMN_270498	GPR103	NM_198199.1	NM_198199.1		310327	38016149	NM_198199.1	Gpr103	NP_937842.1	ILMN_1373804	0005270687	S	1199	TGTGCGAGCAGCCGCGGGAGAAAAGACAACTCAAGAGACAGCTAGCCTTC	2	-	122677125-122677174	2q25	Rattus norvegicus G protein-coupled receptor 103 (Gpr103), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IC ]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IEA]	AQ27	AQ27
Rattus norvegicus	RefSeq	GI_50511319-A	ILMN_279560	RNF166	NM_001002279.1	NM_001002279.1		365022	50511319	NM_001002279.1	Rnf166	NP_001002279.1	ILMN_1376796	0005420577	S	1367	GGGTGTAGCCAGGACTTCATTAGTGTGACAGGTGGAATCCCCAAGCCATG	19	-	52756156-52756205	19q12	Rattus norvegicus ring finger protein 166 (Rnf166), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC2647	MGC2647
Rattus norvegicus	RefSeq	GI_62644235-S	ILMN_65839	LOC365916	XM_575023.1	XM_575023.1		365916	62644235	XM_575023.1	LOC365916	XP_575023.1	ILMN_1372490	0003780079	S	1008	GCCTGGCTCTTTGGCATCCGAGTAAAAAAGGGCAAAAGAAGAGCAGGATG				2q41	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L13 (LOC365916), mRNA.					
Rattus norvegicus	RefSeq	GI_62641988-S	ILMN_293082	RGD1561158_PREDICTED	XM_001075013.1	XM_001075013.1		365408	109463566	XM_001075013.1	RGD1561158_predicted	XP_001075013.1	ILMN_1360386	0004670022	S	395	CCAGTTGCCTGGTGAGGAGCAGTCTGGGAACCAACATCCTCAGTGCCATG				1q43	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC35295 (predicted) (RGD1561158_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660071-S	ILMN_67966	LOC498325	XM_573549.1	XM_573549.1		498325	62660071	XM_573549.1	LOC498325	XP_573549.1	ILMN_1365668	0000940047	S	2003	GAAGAAGTGCTAGGTGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCTGTT				14p22	PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC498325), mRNA.					
Rattus norvegicus	RefSeq	GI_47576788-S	ILMN_292656	OLR188	NM_001001032.1	NM_001001032.1		405918	47576788	NM_001001032.1	Olr188	NP_001001032.1	ILMN_1371134	0002900136	S	540	CTGCGAGCACATGGGTCTTGCCCGATTAGCTTGTGCACCCATCAAGATCA	1	+	162836271-162836320	1q33	Rattus norvegicus olfactory receptor 188 (Olr188), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr188	Olr188
Rattus norvegicus	RefSeq	GI_62643807-S	ILMN_277127	RGD1310250_PREDICTED	XM_345234.2	XM_345234.2		365844	62643807	XM_345234.2	RGD1310250_predicted	XP_345235.2	ILMN_1372112	0001230072	S	5157	CCTAGAGGTCTTCCACAGCTCCCCATTTCTAACAGTCTCCGGCCATAAGC	2	+	182442251-182442257:182446507-182446549	2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1310250_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653627-S	ILMN_295801	NNMT_PREDICTED	XM_001066533.1	XM_001066533.1		300691	109484642	XM_001066533.1	Nnmt_predicted	XP_001066533.1	ILMN_1351105	0003130605	S	943	GAAGGACTCTTCTCCCTTGTGGGGCGAAAGCCGGTGGGATCTGAATGACG				8q23	PREDICTED: Rattus norvegicus nicotinamide N-methyltransferase (predicted) (Nnmt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090350-S	ILMN_276977	RGD1359158	NM_001007737.1	NM_001007737.1		361740	56090350	NM_001007737.1	RGD1359158	NP_001007738.1	ILMN_1355676	0002060731	S	1023	GTGGAGACACTCGCAGTCTCAGAAGCCCCTGTGAAGTTCTTCCCCATCCG	1	-	224821199-224821248	1q51	Rattus norvegicus similar to RIKEN cDNA 1110059E24 (RGD1359158), mRNA.				MGC94797	MGC94797
Rattus norvegicus	RefSeq	GI_62666808-S	ILMN_50142	LOC302670	XM_217612.3	XM_217612.3		302670	62666808	XM_217612.3	LOC302670	XP_217612.3	ILMN_1350290	0003170538	S	800	GGCAATTTGTGGTAAAAGCCAATGTAGTGGCACCCCTCCCCCATGGCTGC				Xq21	PREDICTED: Rattus norvegicus similar to U2af1-rs2 (LOC302670), mRNA.					
Rattus norvegicus	RefSeq	GI_30794227-S	ILMN_293659	FMR1	NM_052804.1	NM_052804.1		24948	30794227	NM_052804.1	Fmr1	NP_434691.1	ILMN_1363458	0005900092	S	3237	GGGGTACCACTGAAACTGTACAGAGCCGTACAAACCGAAGTTCTGCCTCT	X	+	154792830-154792879	Xq37	Rattus norvegicus fragile X mental retardation syndrome 1 homolog (Fmr1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Several ribosomes bound to one mRNA [goid 5844] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence TAS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	FMRP	FMRP
Rattus norvegicus	RefSeq	GI_27706911-S	ILMN_267611	RGD1560855_PREDICTED	XM_001069450.1	XM_001069450.1		302426	109512055	XM_001069450.1	RGD1560855_predicted	XP_001069450.1	ILMN_1354367	0002360129	S	810	CAATTCGGTGAAGCCCATTGAGGTCCCTGGAGCAGTTGGAGGAATGGCGC				Xq31	PREDICTED: Rattus norvegicus similar to Hin-6 protease (predicted) (RGD1560855_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665211-S	ILMN_60286	COG8_PREDICTED	XM_214673.3	XM_214673.3		291990	62665211	XM_214673.3	Cog8_predicted	XP_214673.3	ILMN_1365642	0006200280	S	2574	TGGGGCAGAGGGGTGGCCTTGCTCTTCCTGGCTGGGGACAGTGCAAACTT				19q12	PREDICTED: Rattus norvegicus component of oligomeric golgi complex 8 (predicted) (Cog8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33414512-S	ILMN_58168	COX7B	NM_182819.2	NM_182819.2		303393	65301489	NM_182819.2	Cox7b	NP_877971.2	ILMN_1354399	0000520133	S	90	AGTCGTCTCCAAGTTCGAAGCATTCAGCAAGTGGTGGCAAGGCAGAGCCA	X	+	94138145-94138157:94141781-94141817	Xq31	Rattus norvegicus cytochrome c oxidase subunit VIIb (Cox7b), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642370-S	ILMN_61150	PAX2_PREDICTED	XM_239083.4	XM_239083.4		293992	109460164	XM_239083.4	Pax2_predicted	XP_239083.4	ILMN_1365982	0002900037	S	1121	GAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACA	1	+	249894554-249894603	1q54	PREDICTED: Rattus norvegicus paired box gene 2 (predicted) (Pax2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647981	ILMN_69503	LY49S4	XM_579288.1	XM_579288.1		494195	62647981	XM_579288.1	Ly49s4	XP_579288.1	ILMN_1650238	0000730110	S	1036	TTCCCTCTTGGCACATGGAGTAGCTTGCATGTGGAGAATGGACTTCCTTT				4q42	PREDICTED: Rattus norvegicus Ly49 stimulatory receptor 4 (Ly49s4), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638810-S	ILMN_274218	LOC682393	XR_007914.1	XR_007914.1		682393	109460945	XR_007914.1	LOC682393		ILMN_1357986	0003130176	S	131	CGGGTGCGGCGTGAGGTGTCCTGAGCAAAATCATCAATCAACAGCGCCAT					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (LOC682393), mRNA.					
Rattus norvegicus	RefSeq	GI_12018249-S	ILMN_266446	TEP1	NM_022591.1	NM_022591.1		64523	12018249	NM_022591.1	Tep1	NP_072113.1	ILMN_1353251	0002690167	S	7884	CCCTCCATGTGCTGCCCGGATTGCTGGTGACTGCTTCAGAGGACAGAGAT	15	-	26802836-26802852:26803063-26803095	15p14	Rattus norvegicus telomerase associated protein 1 (Tep1), mRNA.	The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits [goid 5697] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IDA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	Any recombinational process that contributes to the maintenance of proper telomeric length [goid 722] [evidence ISS]; The maintenace of proper telomeric length by the addition of telomeric repeats by telomerase [goid 7004] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence [goid 3720] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Tlp1	Tlp1
Rattus norvegicus	RefSeq	GI_62666462-S	ILMN_268074	RGD1565451_PREDICTED	XR_007981.1	XR_007981.1		298322	109512495	XR_007981.1	RGD1565451_predicted		ILMN_1374656	0001090025	S	2469	TGGCCCAATGCCAGAGAAGGATGAAGACCCCCAGGTCAATCCGAATGGTC				Xq12	PREDICTED: Rattus norvegicus similar to ring finger protein 127 (predicted) (RGD1565451_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663378-S	ILMN_51190	LOC498721	XM_579864.1	XM_579864.1		498721	62663378	XM_579864.1	LOC498721	XP_579864.1	ILMN_1362722	0002030575	S	366	AGACATGGTCTGGGCAGGAGTCCACGCTCCAAGGCAAAGCTCTGTGTGTC					PREDICTED: Rattus norvegicus LOC498721 (LOC498721), mRNA.					
Rattus norvegicus	RefSeq	GI_34874296-S	ILMN_301641	LOC501089	XM_576504.1	XM_576504.1		501089	62654625	XM_576504.1	LOC501089	XP_576504.1	ILMN_1353587	0006370026	S	605	CATCTGTGACCCCAGTGCCAAGCAACAGCAGGTCTGAAATTATCCAGCAG	9	+	5508703-5508733:5512504-5512509:5512510-5512522	9q11	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501089), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654625-S	ILMN_301641	LOC501089	XM_576504.1	XM_576504.1		501089	62654625	XM_576504.1	LOC501089	XP_576504.1	ILMN_1363630	0000730193	S	824	GGCCTTACTTTCACCCCAGCTCTCTCCAGCAAGTGTGCACTTTTAGAGGG	9	+	5512692-5512741	9q11	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501089), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648029-S	ILMN_48950	TTLL3_PREDICTED	XM_342736.2	XM_342736.2		362415	62648029	XM_342736.2	Ttll3_predicted	XP_342737.2	ILMN_1362385	0003120044	S	2689	TGAAGCCCAGAAAGGCTGCTATTCCCCTGCACCTTCGAGGCCCCCACTTT				4q42	PREDICTED: Rattus norvegicus tubulin tyrosine ligase-like family, member 3 (predicted) (Ttll3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645295-S	ILMN_282902	TTC30A1	NM_001029918.1	NM_001029918.1		311123	71361630	NM_001029918.1	Ttc30a1	NP_001025089.1	ILMN_1353479	0005270670	S	1798	CCTTACTGGAGAACATGTCGAAGCACACAATCATGCTGAGGGACAGCGTC	3	-	58645822-58645871	3q23	Rattus norvegicus tetratricopeptide repeat domain 30A1 (Ttc30a1), mRNA.	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC116209	MGC116209
Rattus norvegicus	RefSeq	GI_58865623-A	ILMN_284567	NUF2	NM_001012028.1	NM_001012028.1		304951	58865623	NM_001012028.1	Nuf2	NP_001012028.1	ILMN_1376705	0006520402	S	1461	GCTGCACTAGAATAGGAGGGAAGACTGCCGAGCTGAAGAGGAGGATGTTC	13	-	85286908-85286957	13q24	Rattus norvegicus NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) (Nuf2), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657610-S	ILMN_58859	RGD1565091_PREDICTED	XM_221671.4	XM_221671.4		288275	109492908	XM_221671.4	RGD1565091_predicted	XP_221671.4	ILMN_1355029	0002900195	S	3086	GGATGGCGAGATTCTGGGTCTCTGTGAGGAAGGCTGTGGAATGGGGTTCC	11	-	29511921-29511970	11q11	PREDICTED: Rattus norvegicus similar to putative serine/threonine protein kinase MAK-V (predicted) (RGD1565091_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653789-S	ILMN_47747	LOC300768	XM_217183.3	XM_217183.3		300768	62653789	XM_217183.3	LOC300768	XP_217183.3	ILMN_1362822	0001570347	S	2405	CCGCCGGGCTGTTTTCCAAGCCGATCTCTCCGTTGATTCTACTGGTCCCT				8q24	PREDICTED: Rattus norvegicus similar to KIAA0925 protein (LOC300768), mRNA.					
Rattus norvegicus	RefSeq	GI_62665750-S	ILMN_283692	PPIL1	XM_001069671.1	XM_001069671.1		309651	109509765	XM_001069671.1	Ppil1	XP_001069671.1	ILMN_1370132	0002340102	S	351	AGGGATGGTGAATCGAGTGGGCATGGTGGAAACAAACTCCCAGGACCGGC				20p12	PREDICTED: Rattus norvegicus peptidylprolyl isomerase (cyclophilin)-like 1 (Ppil1), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_17105357-S	ILMN_273084	UBE1C	NM_057205.1	NM_057205.1		117553	17105357	NM_057205.1	Ube1c	NP_476553.1	ILMN_1368071	0000940563	S	1461	GCAATTGAAGAGCCGGGAAGATGAGGCAGAGGGGAACACCCAAGAAAGGA	4	-	131903106-131903155	4q34	Rattus norvegicus ubiquitin-activating enzyme E1C (Ube1c), mRNA.				Uba3	Uba3
Rattus norvegicus	RefSeq	GI_62654360-S	ILMN_53224	RGD1565187_PREDICTED	XM_576475.2	XM_576475.2		501059	109483991	XM_576475.2	RGD1565187_predicted	XP_576475.2	ILMN_1349082	0003130066	S	2234	GAGGATGTTCAGGTAGCACTGAAGCTAGGCAGCAGCATCCGGCCAGGCAT	8	+	114900994-114901043	8q32	PREDICTED: Rattus norvegicus similar to kinesin like protein 9 (predicted) (RGD1565187_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664286-S	ILMN_55036	PCDH1_PREDICTED	XM_225997.4	XM_225997.4		307481	109506520	XM_225997.4	Pcdh1_predicted	XP_225997.4	ILMN_1366774	0001980142	S	3300	CGGCAGCATAGGTGAAATGGAACACCCTGAGAACGACCTCCGCCCTTTGC	18	-	31111339-31111354:31113475-31113508	18p11	PREDICTED: Rattus norvegicus protocadherin 1 (cadherin-like 1) (predicted) (Pcdh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666875-S	ILMN_271986	PRKX	NM_001033963.1	NM_001033963.1		501563	77020269	NM_001033963.1	Prkx	NP_001029135.1	ILMN_1370756	0002450435	S	831	TTCGCCAAGAAACTGGTGGATAGGACATGGACTCTCTGTGGGACACCGGA	X	-	63512468-63512495:63518459-63518480	Xq22	Rattus norvegicus protein kinase, X-linked (Prkx), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666874	ILMN_271986	PRKX	NM_001033963.1	NM_001033963.1		501563	77020269	NM_001033963.1	Prkx	NP_001029135.1	ILMN_1649854	0006370594	S	1491	CCATCACCCTTGGGACCCAGCCTCATTTCAACAACTGGAAACCTGCCCAG	X	-	63487072-63487121	Xq22	Rattus norvegicus protein kinase, X-linked (Prkx), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649298-S	ILMN_275370	JAK1	XM_001061647.1	XM_001061647.1		84598	109476839	XM_001061647.1	Jak1	XP_001061647.1	ILMN_1354897	0002370524	S	3853	GTTGGAACTATCAGTTGTGTAGCAAAGGACGTCTGGCACCGTGCTGCTGG				5q33	PREDICTED: Rattus norvegicus Janus kinase 1 (Jak1), mRNA.		Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Interacting selectively with the growth hormone receptor [goid 5131] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11968109-S	ILMN_292496	DAP	NM_022526.1	NM_022526.1		64322	11968109	NM_022526.1	Dap	NP_071971.1	ILMN_1362377	0001780193	S	1174	GCAATCCAGTATCCCAACAGTGGCCTTCACATGGAGCAGAACACAGCCCC	2	+	83335030-83335079	2q22	Rattus norvegicus death-associated protein (Dap), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]		MGC72827; Rap7a	MGC72827; Rap7a
Rattus norvegicus	RefSeq	GI_62643675-S	ILMN_295966	BCAN	NM_012916.2	NM_012916.2		25393	75992945	NM_012916.2	Bcan	NP_037048.2	ILMN_1351030	0003140402	S	1806	GCCTGCAGAGACTTTGCAACCCCCAAGGGAGGGAAGCCTCACATCTACTC	2	-	180073712-180073761	2q34	Rattus norvegicus brevican (Bcan), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IPI]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IPI]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]	ALPBRE	ALPBRE
Rattus norvegicus	RefSeq	GI_62666107	ILMN_58620	LOC499451	XM_574774.1	XM_574774.1		499451	62666107	XM_574774.1	LOC499451	XP_574774.1	ILMN_1649953	0006290348	S	608	GAACCGAAGAAGTCGCACTTGAGAGGATCCTAGTGCAAGCCTTTGAGAGG				20q12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC499451), mRNA.					
Rattus norvegicus	RefSeq	GI_34877469-S	ILMN_67529	LOC291346	XM_225620.2	XM_225620.2		291346	34877469	XM_225620.2	LOC291346	XP_225620.2	ILMN_1356819	0004570037	S	1873	GGAGGAACAGACAGTCACAAGTCCAAACTCACACCAAATCTGGCTCAGGG				17q12.3	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC291346), mRNA.					
Rattus norvegicus	RefSeq	GI_6978428-S	ILMN_292737	ACAA1	NM_012489.1	NM_012489.1		24157	6978428	NM_012489.1	Acaa1	NP_036621.1	ILMN_1359507	0003940041	S	1525	CAGGAGGTGGAACTGCCCTGTCAAGTACCCCAAGCCATGCTAAAGTGAGC	8	+	124313794-124313843	8q32	Rattus norvegicus acetyl-Coenzyme A acyltransferase 1 (Acaa1), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IDA]		Pktaa; Acaa; MGC108766	Pktaa; Acaa; MGC108766
Rattus norvegicus	RefSeq	GI_62658220-S	ILMN_56592	SLC7A4_PREDICTED	XM_221263.4	XM_221263.4		303787	109493604	XM_221263.4	Slc7a4_predicted	XP_221263.2	ILMN_1364763	0001570324	S	1830	CTTCTGGCTGCTGGTCGGACTCGTCGTGTATTTTGGCTACGGCATCTGGC	11	+	85429607-85429623:85429727-85429759	11q23	PREDICTED: Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 (predicted) (Slc7a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576974-S	ILMN_267850	OLR263	NM_001000220.1	NM_001000220.1		293399	47576974	NM_001000220.1	Olr263	NP_001000220.1	ILMN_1373969	0002350717	S	552	TGCTCCTTTGGTGGAACTTTCGTGCTCTGATGTGAGTGTCTCTGTAGTTG	1	+	165830754-165830803	1q33	Rattus norvegicus olfactory receptor 263 (Olr263), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr263	Olr263
Rattus norvegicus	RefSeq	GI_12083662-S	ILMN_263009	FLOT1	NM_022701.1	NM_022701.1		64665	12083662	NM_022701.1	Flot1	NP_073192.1	ILMN_1348870	0005670605	S	1835	CAGGCGTCAGCATCTCCCAGGTGAATCACAACAAGCCTTTAAGGACGGCG	20	-	3065974-3066023	20p12	Rattus norvegicus flotillin 1 (Flot1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence ISS]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence IDA]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence ISS]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence IEA]; A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; cetriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome [goid 34451] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence IEA]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Rareg	Rareg
Rattus norvegicus	RefSeq	GI_62654221-S	ILMN_68995	NEK11_PREDICTED	XM_236592.3	XM_236592.3		315978	62654221	XM_236592.3	Nek11_predicted	XP_236592.3	ILMN_1373213	0006350484	S	4049	CAGCGATCGAAGGGGATGGTCTAGAGGACACGGAGAGCTTCCTTTGGCCA				8q32	PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)- related kinase 11 (predicted) (Nek11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21326450-S	ILMN_264303	HMGA1	NM_139327.1	NM_139327.1		117062	21326450	NM_139327.1	Hmga1	NP_647543.1	ILMN_1362045	0000380739	S	91	AAGCAGCCTTCGGTGAGTCCTGGGACGGCGCTGGTAGGGAGTCAGAAGGA	20	+	5769142-5769186:5770427-5770431	20p12	Rattus norvegicus high mobility group AT-hook 1 (Hmga1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS];  [goid 30374] [evidence ISS]; Interacting selectively with any of the peroxisome proliferator activated receptors, alpha, beta or gamma [goid 42975] [evidence ISS]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence ISS]	Hmgiy; Hmgi	Hmgiy; Hmgi
Rattus norvegicus	RefSeq	GI_13540708-S	ILMN_285265	SCN1A	NM_030875.1	NM_030875.1		81574	13540708	NM_030875.1	Scn1a	NP_110502.1	ILMN_1358434	0002120093	S	7883	CCATGACGGGGTAGTGGTAGATCTCTGCTTTTTTAATCACGGGCTTTAAG	3	-	48238866-48238915	3q21	Rattus norvegicus sodium channel, voltage-gated, type I, alpha (Scn1a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IDA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Specialised type of cell-cell junction in cardiac muscle, which mediates mechanical and electrochemical integration between the individual cardiomyocytes. Consist of three different kinds of substructures: adherens junctions, desmosomes and gap junctions [goid 14704] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; An axon part that is a gap in the myelin where voltage-gated sodium channels cluster and saltatory conduction is executed [goid 33268] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Portion of the axon proximal to the neuronal cell body, at the level of the axon hillock. The action potentials that propagate along the axon are generated at the level of this initial segment [goid 43194] [evidence ISS]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]; A neurological process that causes the sequential depolarization of a neuron's cell membrane along an axon [goid 19227] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence TAS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IMP]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]	Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor [goid 4526] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence TAS]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IMP]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IC ]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence ISS]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929189-S	ILMN_302648	LGALS3	NM_031832.1	NM_031832.1		83781	13929189	NM_031832.1	Lgals3	NP_114020.1	ILMN_1370840	0002320292	S	791	GACATAACCCTCACCAGCGCTTCCCACGCCATGATCTAAGCCAGAAGGGG	15	+	23338849-23338887:23338888-23338898	15p14	Rattus norvegicus lectin, galactose binding, soluble 3 (Lgals3), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with an immunoglobulin of the IgE isotype [goid 19863] [evidence IEA]	MGC105387; gal-3	MGC105387; gal-3
Rattus norvegicus	RefSeq	GI_47577024-S	ILMN_302418	OLR780	NM_001000606.1	NM_001000606.1		404795	47577024	NM_001000606.1	Olr780	NP_001000606.1	ILMN_1357592	0004540541	S	562	GCCTGCATAGACACTTACCAGCTGGAATTCATGGTGACAGTCAACAGTGG	3	-	97522417-97522466	3q34	Rattus norvegicus olfactory receptor 780 (Olr780), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr780	Olr780
Rattus norvegicus	RefSeq	GI_62655195-S	ILMN_48805	ARPC2_PREDICTED	XM_217432.4	XM_217432.4		301511	109486135	XM_217432.4	Arpc2_predicted	XP_217432.4	ILMN_1367825	0005220259	S	1002	GGAGGAAGCACTGTTGACCGAAGGCTGGACCGCTTGCTACTGGATAATCG	9	+	73593871-73593920	9q33	PREDICTED: Rattus norvegicus actin related protein 2/3 complex, subunit 2 (predicted) (Arpc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645034-S	ILMN_266586	RGD1309368_PREDICTED	XR_007788.1	XR_007788.1		366031	109469830	XR_007788.1	RGD1309368_predicted		ILMN_1370325	0005900575	S	3802	ACTTACAGCCCAAGTCAGCAGGAGGTAGCTGGGGCTCGTCTGGAGATGGA				3q11	PREDICTED: Rattus norvegicus similar to 5930402A21 protein (predicted) (RGD1309368_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644800-S	ILMN_287007	REXO4	NM_001033884.1	NM_001033884.1		311826	76563953	NM_001033884.1	Rexo4	NP_001029056.1	ILMN_1368678	0006840551	S	2228	CCCAACCCCCGATGTCTGCTTTTTAACGTAGCTGTGGACTGAGATGTGAC	3	-	5849576-5849625	3p12	Rattus norvegicus REX4, RNA exonuclease 4 homolog (S. cerevisiae) (Rexo4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]	Xpmc2h	Xpmc2h
Rattus norvegicus	RefSeq	GI_62641473-A	ILMN_281370	OLR287	NM_173334.1	NM_173334.1		287001	27545425	NM_173334.1	Olr287	NP_775456.1	ILMN_1376874	0006370292	S	663	TGCTTACATCATCACTACCATCATCAAGATTCCCTCTGCCCGGGGCCGGC	1	+	200002601-200002650	1q41	Rattus norvegicus olfactory receptor 287 (Olr287), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665722-S	ILMN_289651	TEAD3	XM_001078363.1	XM_001078363.1		294299	109509838	XM_001078363.1	Tead3	XP_001078363.1	ILMN_1366257	0006860484	S	2576	GACGGGCTATATCGTAAATGGCTCTAAGGCAGGGGCCACTCAAGGCCTGG				20p12	PREDICTED: Rattus norvegicus TEA domain family member 3 (Tead3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27545393-S	ILMN_301765	VOM2R32	NM_173315.1	NM_173315.1		286981	27545393	NM_173315.1	Vom2r32	NP_775437.1	ILMN_1368584	0002360215	S	3432	GGGAAGGTGGGGACTACTTCTTGATGCTGGGAAAGGAGATATGGGGTGAG	1	+	71180731-71180780	1q21	Rattus norvegicus vomeronasal 2 receptor, 32 (Vom2r32), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Vom2r32	Vom2r32
Rattus norvegicus	RefSeq	GI_27597057-S	ILMN_267929	GIP	NM_019630.3	NM_019630.3		25040	27597057	NM_019630.3	Gip	NP_062604.1	ILMN_1358345	0002680193	S	400	TGTGCTGAGGGACCTTCTGATTCAAGAGCTACTGGCCTGGATGGCGGACC	10	+	84739359-84739408	10q31	Rattus norvegicus gastric inhibitory polypeptide (Gip), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence TAS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Gludins; RATGLUDINS	Gludins; RATGLUDINS
Rattus norvegicus	RefSeq	GI_19705542-S	ILMN_268656	MOSC2	NM_134410.1	NM_134410.1		171451	19705542	NM_134410.1	Mosc2	NP_599237.1	ILMN_1372217	0002360368	S	1001	GGTGACCCTGTGTATCGGATGGTGGATTAGTGGATCCCGTGGACTGACTC				13q26	Rattus norvegicus MOCO sulphurase C-terminal domain containing 2 (Mosc2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with molybdenum (Mo) ions [goid 30151] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	Mg87	Mg87
Rattus norvegicus	RefSeq	GI_62648423-S	ILMN_67847	LOC502908	XM_578410.1	XM_578410.1		502908	62648423	XM_578410.1	LOC502908	XP_578410.1	ILMN_1351262	0006180170	S	77	GGAGACTCAGCAGTCCAGAAAAGCTGGCCCCAGAGTTTTTCAGTATACTC				4q42	PREDICTED: Rattus norvegicus similar to Ly49 stimulatory receptor 7 (LOC502908), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717774-S	ILMN_300590	LOC685988	XM_001066078.1	XM_001066078.1		685988	109512835	XM_001066078.1	LOC685988	XP_001066078.1	ILMN_1371381	0002100162	S	1072	GCATTATCAGGTCTCAGAAAGTGCAAGAGAGTTGGAATTGGACACACCCC	Un|NW_047831.1	+	59972-59981:61591-61630		PREDICTED: Rattus norvegicus hypothetical protein LOC685988 (LOC685988), mRNA.					
Rattus norvegicus	RefSeq	GI_6981005-S	ILMN_290167	HIST1H1T	NM_012579.1	NM_012579.1		24438	6981005	NM_012579.1	Hist1h1t	NP_036711.1	ILMN_1353773	0005420215	S	603	CCCCGCCAAAGCGAGGGCAACCAACTCCAACTCTGGGAAGTCAAAGATGG	17	+	48463918-48463967	17p11	Rattus norvegicus histone cluster 1, H1t (Hist1h1t), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	H1ft; H1D; H1f3; H1s-4; H1t; H1.3	H1ft; H1D; H1f3; H1s-4; H1t; H1.3
Rattus norvegicus	RefSeq	GI_47271547-S	ILMN_263461	NID67	NM_173126.2	NM_173126.2		286910	47271547	NM_173126.2	Nid67	NP_775149.1	ILMN_1355313	0006220022	S	1271	TCTGTGGCACTGGAGATGGAACTTTGACCTCCTTCATGCTGGGAAAGGCA	18	-	56426172-56426221	18q12.1	Rattus norvegicus putative small membrane protein NID67 (Nid67), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]			
Rattus norvegicus	RefSeq	GI_62645925-S	ILMN_265192	PAK7_PREDICTED	XM_001080088.1	XM_001080088.1		311450	109470755	XM_001080088.1	Pak7_predicted	XP_001080088.1	ILMN_1371032	0005890746	S	3829	TAGCAAGGGGGTACTTTACCAAGTATGGTCTAACTTCCGTGGTGGCCGTG				3q36	PREDICTED: Rattus norvegicus p21 (CDKN1A)-activated kinase 7 (predicted) (Pak7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650423-S	ILMN_277012	RGD1560938_PREDICTED	XM_001069697.1	XM_001069697.1		362713	109479079	XM_001069697.1	RGD1560938_predicted	XP_001069697.1	ILMN_1373008	0003440066	S	1447	GGCACAACAACCTCCCGCCTTGAGAGTGTTCTCCTTTACACACTCACTGC				6q14	PREDICTED: Rattus norvegicus similar to mKIAA1724 protein (predicted) (RGD1560938_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657043-S	ILMN_62245	NKIRAS2_PREDICTED	XM_213462.4	XM_213462.4		287707	109489013	XM_213462.4	Nkiras2_predicted	XP_213462.1	ILMN_1358749	0000060446	S	1745	CCACGCCCCTAGCCCTTCCTTCTTACCTCAGATGCCTGAACAGAACCAGG	10	+	89571313-89571362	10q32.1	PREDICTED: Rattus norvegicus NFKB inhibitor interacting Ras-like protein 2 (predicted) (Nkiras2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661211-S	ILMN_66901	LOC364276	XM_577389.1	XM_577389.1		364276	62661211	XM_577389.1	LOC364276	XP_577389.1	ILMN_1368799	0003610164	S	513	GAGAAGGCCAAGGACCTGGCCAACAAGAGCATCCTTGGTGAAGCTTTTGA				15p16	PREDICTED: Rattus norvegicus similar to PX19 homolog (LOC364276), mRNA.					
Rattus norvegicus	RefSeq	GI_62645060-S	ILMN_62481	LOC499795	XM_575131.1	XM_575131.1		499795	62645060	XM_575131.1	LOC499795	XP_575131.1	ILMN_1360304	0001690010	S	553	GTCCTGTTTAGACGTCAGTACCCGCTCCTTTATGCAAGTGCCATTGCTGC				3q12	PREDICTED: Rattus norvegicus similar to ARHGAP15 (LOC499795), mRNA.					
Rattus norvegicus	RefSeq	GI_62652764-S	ILMN_62868	LOC503158	XM_578682.1	XM_578682.1		503158	62652764	XM_578682.1	LOC503158	XP_578682.1	ILMN_1363485	0004560717	S	974	CCTCTATTACCTCAAAAAAGCAGCTGAACTTACCCTTGGCCTCTGCCCAC					PREDICTED: Rattus norvegicus similar to cytochrome P-450-11beta (LOC503158), mRNA.					
Rattus norvegicus	RefSeq	GI_62643816-S	ILMN_66400	SLC27A3_PREDICTED	XM_215605.4	XM_215605.4		295219	109465104	XM_215605.4	Slc27a3_predicted	XP_215605.3	ILMN_1364492	0006350600	S	2231	TGGACCAGGACAAAGGTGCCTACCTGCCCCTCACACCTGCCCGCTACAAT	2	-	182644134-182644183	2q34	PREDICTED: Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 3 (predicted) (Slc27a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649569-S	ILMN_58841	LOC298495	XM_213045.2	XM_213045.2		298495	62649569	XM_213045.2	LOC298495	XP_213045.1	ILMN_1358659	0000670092	S	270	GTGATCTGGGGGAAAGTAACTCGGGCCCATGGAAACAGTGGCAGGGTTTG					PREDICTED: Rattus norvegicus similar to ribosomal protein L35a (LOC298495), mRNA.					
Rattus norvegicus	RefSeq	GI_62641018-S	ILMN_286305	RGD1562228_PREDICTED	XM_001067013.1	XM_001067013.1		499214	109462507	XM_001067013.1	RGD1562228_predicted	XP_001067013.1	ILMN_1355168	0005890025	S	492	GGACCTGGGAGGAAGAAACCCTAAGTAACAGACGTGTGCTGCAGGAGGTG				1q32	PREDICTED: Rattus norvegicus similar to E2-induced gene 2 protein (predicted) (RGD1562228_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663104-S	ILMN_57705	LOC498683	XM_573967.1	XM_573967.1		498683	62663104	XM_573967.1	LOC498683	XP_573967.1	ILMN_1367390	0004120093	S	270	GTGATTAAAAGTTGCTCATCGGCCAGCTCCGTGTCACAAACCACCACTGC				17p14	PREDICTED: Rattus norvegicus similar to Sprouty homolog 3 (Spry-3) (LOC498683), mRNA.					
Rattus norvegicus	RefSeq	GI_56090203-S	ILMN_301671	MSS4	NM_001007678.1	NM_001007678.1		304807	56090203	NM_001007678.1	Mss4	NP_001007679.1	ILMN_1358787	0006620707	S	2397	TGCCTTCATGTGTGTGGCACCCATACAAACAAGTGAGCACACTCGCGTAC				13q13	Rattus norvegicus Mss4 protein (Mss4), mRNA.					
Rattus norvegicus	RefSeq	GI_62646954-S	ILMN_66407	IRF5_PREDICTED	XM_216105.3	XM_216105.3		296953	62646954	XM_216105.3	Irf5_predicted	XP_216105.3	ILMN_1362902	0004060128	S	1845	CCACCAATTCCTCCAGCAAAACCTGCCAAGGAGTGTTGTGGGGCTTCTGC				4q22	PREDICTED: Rattus norvegicus interferon regulatory factor 5 (predicted) (Irf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871893-S	ILMN_69076	RGD1562725_PREDICTED	XM_575923.2	XM_575923.2		500559	109475594	XM_575923.2	RGD1562725_predicted	XP_575923.1	ILMN_1354268	0002190324	S	122	TTAAAGATACCGGGAAGACTCCCGAGGAGCCCGACGTGGCGATTCACTGG	5	+	151295247-151295296	5q36	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1562725_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649764-S	ILMN_69076	RGD1562725_PREDICTED	XM_575923.2	XM_575923.2		500559	109475594	XM_575923.2	RGD1562725_predicted	XP_575923.1	ILMN_2040787	0001820168	S	335	CCAAGACGTGGGATCGTTTCCAGATGAGAATCCACAAGCGACTCATCGAC	5	+	151295460-151295509	5q36	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1562725_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649764-S	ILMN_69076	RGD1562725_PREDICTED	XM_575923.2	XM_575923.2		500559	109475594	XM_575923.2	RGD1562725_predicted	XP_575923.1	ILMN_2040788	0003420463	S	365	TCCACAAGCGACTCATCGACTTACACAGTCCTTCTGAGATTGTTAAGCAG	5	+	151295490-151295539	5q36	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1562725_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656026-S	ILMN_274786	RUFY1	XM_001071405.1	XM_001071405.1		360521	109490633	XM_001071405.1	Rufy1	XP_001071405.1	ILMN_1369944	0004060487	S	2471	TTGCAGCAGTTTGCTAGTACAGAATCCTCTTTCCTACCCGCGTCCCACAG				10q22	PREDICTED: Rattus norvegicus RUN and FYVE domain containing 1 (Rufy1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659751-S	ILMN_286082	PEX19	XM_001057359.1	XM_001057359.1		307259	109499071	XM_001057359.1	Pex19	XP_001057359.1	ILMN_1374501	0004560102	S	907	CTCGATAATGCAAGACATTCCAGGTGTGCCAGGACCAACTTGTGACCCAG					PREDICTED: Rattus norvegicus peroxisome biogenesis factor 19, transcript variant 2 (Pex19), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62640851-S	ILMN_57462	LOC502345	XM_577813.1	XM_577813.1		502345	62640851	XM_577813.1	LOC502345	XP_577813.1	ILMN_1355265	0004200121	S	454	CTGATGCGGACAAGCTGCATCCAGAGTCCCTCCATCTTGAGACTGTATCC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated 13 (LOC502345), mRNA.					
Rattus norvegicus	Unigene	Rn.8141-S	ILMN_160828	EHD1_PREDICTED	Rn.8141-S		Rn.8141-S		62641788	XM_219529	Ehd1_predicted		ILMN_1530419	0002680201	S	5659	TGTCAAGATGGAGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTAC					PREDICTED: Rattus norvegicus EH-domain containing 1 (predicted) (Ehd1_predicted),					
Rattus norvegicus	RefSeq	GI_57528268-S	ILMN_267561	ABHD14A	NM_001009670.1	NM_001009670.1		300982	57528268	NM_001009670.1	Abhd14a	NP_001009670.1	ILMN_1361386	0006980524	S	1085	TGTATGGGGAACTGGACCACACCTTGGCGCGAGAGTCACTTCAGCAGCTC	8	-	111583954-111584003	8q32	Rattus norvegicus abhydrolase domain containing 14A (Abhd14a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC95137; RGD1309721; Dorz1	MGC95137; RGD1309721; Dorz1
Rattus norvegicus	RefSeq	GI_62718612-S	ILMN_272118	LOC302022	XM_001073811.1	XM_001073811.1		302022	109514294	XM_001073811.1	LOC302022	XP_001073811.1	ILMN_1358840	0005130594	S	537	AGGGCGACGTTGAAAGCTCCGCGGCGGTGAAGCAAGCAGTACGTAGAAGT					PREDICTED: Rattus norvegicus similar to nidogen 2 (LOC302022), mRNA.					
Rattus norvegicus	RefSeq	GI_62653557-S	ILMN_58942	POU2F3	XM_343378.2	XM_343378.2		116544	62653557	XM_343378.2	Pou2f3	XP_343379.2	ILMN_1354905	0004730129	S	2315	CTGTGGCCACTTTCTTGTACATAGTCCTTTCCTACTCTGCACTATGACCG				8q22	PREDICTED: Rattus norvegicus POU domain, class 2, transcription factor 3 (Pou2f3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence TAS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence IDA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658638-S	ILMN_271301	RGD1560686_PREDICTED	XM_001073292.1	XM_001073292.1		304297	109496641	XM_001073292.1	RGD1560686_predicted	XP_001073292.1	ILMN_1360847	0002760647	S	689	ACGTGCAGGCTGTGAATGAGAGGAACGGAGAGAACAAGACGAGCCCATTC				12q11	PREDICTED: Rattus norvegicus similar to sidekick 1 (predicted) (RGD1560686_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662969-S	ILMN_60192	LOC502098	XM_577538.1	XM_577538.1		502098	62662969	XM_577538.1	LOC502098	XP_577538.1	ILMN_1364838	0005290603	S	1255	TCAGGATGGCGGGTCCTCCGCTCAGTAAGGGTGAAGATGCTGTGGCTCTA					PREDICTED: Rattus norvegicus similar to mucin - rat (fragment) (LOC502098), mRNA.					
Rattus norvegicus	RefSeq	GI_62648772-S	ILMN_63032	RNGTT_PREDICTED	XM_232865.3	XM_232865.3		313131	62648772	XM_232865.3	Rngtt_predicted	XP_232865.3	ILMN_1357672	0004280647	S	1793	CTCAACCAGAGAAACTGAAGAGACAGTGTGGCTTGGTACTGGTACACGTG				5q21	PREDICTED: Rattus norvegicus RNA guanylyltransferase and 5'-phosphatase (predicted) (Rngtt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62422578-S	ILMN_301970	TPRKB	NM_001013926.2	NM_001013926.2		297411	62422578	NM_001013926.2	Tprkb	NP_001013948.2	ILMN_1369876	0006590707	S	123	GCAGTTAACACAGCAGCTGGACTTGTTTCCCGAGTGCAAGGTGACCCTTC	4	+	120074084-120074133	4q34	Rattus norvegicus Tp53rk binding protein (Tprkb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	Cgi-121; RGD1309786	Cgi-121; RGD1309786
Rattus norvegicus	RefSeq	GI_60097909-S	ILMN_294698	GPR19	NM_080579.1	NM_080579.1		312787	60097909	NM_080579.1	Gpr19	NP_542146.1	ILMN_1354069	0002510288	S	1344	CAGGGAGAAGAAGCTCGCCTGGCCCATCAACTCAAACCCACCAAACACTT	4	-	171791853-171791902	4q43	Rattus norvegicus G protein-coupled receptor 19 (Gpr19), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718634-S	ILMN_50438	LOC501441	XM_576851.2	XM_576851.2		501441	109513810	XM_576851.2	LOC501441	XP_576851.1	ILMN_1349049	0006660403	S	381	ACGGGGGAGAGAACACTTTTGGCTTCTGAGACCTTGCTGGGCTAGGTGCC	Un|NW_047933.1	-	629474-629495:629496-629523		PREDICTED: Rattus norvegicus similar to GABA(A) receptor-associated protein like 2 (LOC501441), mRNA.					
Rattus norvegicus	RefSeq	GI_62648382-S	ILMN_65933	RGD1563551_PREDICTED	XM_578388.2	XM_578388.2		502887	109472608	XM_578388.2	RGD1563551_predicted	XP_578388.1	ILMN_1350533	0000940136	S	253	GGAATAAGGAAAGTTCCGTACTGCATCCGAGTACGTTTGTCCAGAAAGCG	4	-	159347543-159347592	4q42	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1563551_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083668-S	ILMN_291066	MBL2	NM_022704.1	NM_022704.1		64668	12083668	NM_022704.1	Mbl2	NP_073195.1	ILMN_1374623	0000130195	S	505	GCAGCCCTGCGATCGGAGCTGAGAGCTATGAGAAAGTGGGTGCTCCTTTC	1	+	233982597-233982623:233983327-233983349	1q52	Rattus norvegicus mannose binding lectin 2 (protein C) (Mbl2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]	Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 1867] [evidence ISS]; Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 1867] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IDA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_32140185-S	ILMN_291860	ACSM4	NM_181695.1	NM_181695.1		353317	32140185	NM_181695.1	Acsm4	NP_859046.1	ILMN_1368911	0001660278	S	1838	GAGACCAGGAGTGGGGACGGGCATAACTGGATAAGAACCGAGATGGGAGG	1	+	177996469-177996495:177996496-177996518	1q35	Rattus norvegicus acyl-CoA synthetase medium-chain family member 4 (Acsm4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IDA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence NAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + n malonyl-CoA + 2n NADH + 2n NADPH + 4n H+ = a long-chain acyl-CoA + n CoA + n CO2 + 2n NAD+ + 2n NADP+ [goid 4321] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence NAS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + an acid + CoA = AMP + diphosphate + an acyl-CoA [goid 47760] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644280-S	ILMN_68026	USP53_PREDICTED	XM_215700.4	XM_215700.4		295425	109465519	XM_215700.4	Usp53_predicted	XP_215700.4	ILMN_1350194	0005860707	S	3551	CTTGAGTACAGCCTCAGGACCAAGTTCAGAAGGGAGTGCGTACATGACCC	2	-	219622802-219622851	2q42	PREDICTED: Rattus norvegicus ubiquitin specific protease 53 (predicted) (Usp53_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667618-S	ILMN_50060	LOC501667	XM_577063.1	XM_577063.1		501667	62667618	XM_577063.1	LOC501667	XP_577063.1	ILMN_1365633	0002190520	S	804	CCAAGCAAAGGGGATATCACAGTAGGGATGGGGGGAACCAACAGAGTCAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501667), mRNA.					
Rattus norvegicus	RefSeq	GI_62655663-S	ILMN_65169	LOC363534	XM_343853.2	XM_343853.2		363534	62655663	XM_343853.2	LOC363534	XP_343854.2	ILMN_1351459	0001500270	S	1897	CAGGAGCTAAGGGAGTGCTCAGACCCTCAAAGACAGGTGGACACCCCACA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933437K13 (LOC363534), mRNA.					
Rattus norvegicus	RefSeq	GI_62638232-S	ILMN_61855	STX11_PREDICTED	XM_218092.3	XM_218092.3		292483	62638232	XM_218092.3	Stx11_predicted	XP_218092.2	ILMN_1365187	0005900672	S	2203	GTCTGCATGTGTCTTAGTCACGGTTCTCTAGAGTCACAGGGTAATCTCTG				1p13	PREDICTED: Rattus norvegicus syntaxin 11 (predicted) (Stx11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393601-S	ILMN_297135	IL9R	NM_017021.1	NM_017021.1		24500	8393601	NM_017021.1	Il9r	NP_058717.1	ILMN_1351315	0001230088	S	3387	ACCCTGGGCAGTGGTTACTGGACAGTCCTCGTGTCTTTTGTCTGGGTGTT	10	+	15689946-15689995	10q12	Rattus norvegicus interleukin 9 receptor (Il9r), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		 [goid 4896] [evidence IEA]; Combining with interleukin-9 to initiate a change in cell activity [goid 4919] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_13592112-S	ILMN_276378	THPO	NM_031133.1	NM_031133.1		81811	13592112	NM_031133.1	Thpo	NP_112395.1	ILMN_1366364	0006840400	S	1288	CAGCTCACTAGACATCCTGCTCTCGCCTAACGGGCCCTGGGAAAGGGATA	11	+	82417689-82417738	11q23	Rattus norvegicus thrombopoietin (Thpo), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IDA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651715-S	ILMN_55850	LOC299625	XM_216850.3	XM_216850.3		299625	62651715	XM_216850.3	LOC299625	XP_216850.3	ILMN_1360929	0005080278	S	1338	CAGTGTACCGCGAACTGGAGCTGGCTTCCTTGTGGTTGAAGAGCAGGTCT				7q11	PREDICTED: Rattus norvegicus similar to Lmnb2 protein (LOC299625), mRNA.					
Rattus norvegicus	RefSeq	GI_62666684	ILMN_277408	LOC681065	XR_005957.1	XR_005957.1		681065	109510567	XR_005957.1	LOC681065		ILMN_1650936	0001450075	S	411	GCAAGCAGGTTCGCAAGCAAGACCCTTTCATGGTTCGTCTGGACTCCCAG	X	-	35393407-35393456	Xq14	PREDICTED: Rattus norvegicus hypothetical protein LOC681065 (LOC681065), mRNA.					
Rattus norvegicus	RefSeq	GI_61557126-S	ILMN_295594	NNT	NM_001013157.1	NM_001013157.1		310378	61557126	NM_001013157.1	Nnt	NP_001013175.1	ILMN_1361484	0006900541	S	3820	CTCCTGACCTGTTCTCTTGCATTTTAGCCGTAGTCTGGATTGATCATGCC	2	-	51496711-51496760	2q16	Rattus norvegicus nicotinamide nucleotide transhydrogenase (Nnt), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+ [goid 8750] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence ISS]	MGC109126; Nnt	MGC109126; Nnt
Rattus norvegicus	RefSeq	GI_62660469-S	ILMN_49626	LOC305350	XM_223417.2	XM_223417.2		305350	62660469	XM_223417.2	LOC305350	XP_223417.1	ILMN_1373935	0006900348	S	2296	TCTGCTTGACTTGTTTGTGCTACTGGTGTGGACACAGCCGACCAGTGTGT				14p11	PREDICTED: Rattus norvegicus similar to Mitochondrial carrier triple repeat 1 (LOC305350), mRNA.					
Rattus norvegicus	RefSeq	GI_21955137-S	ILMN_267301	RAB38	NM_145774.1	NM_145774.1		252916	21955137	NM_145774.1	Rab38	NP_665717.1	ILMN_1366478	0003290279	S	1005	CTTGAGAAGGGGACTAAGAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGG	1	+	144864183-144864232	1q32	Rattus norvegicus RAB38, member RAS oncogene family (Rab38), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence IMP]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence NAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IC ]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IC ]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Ruby; R	Ruby; R
Rattus norvegicus	RefSeq	GI_58865745-A	ILMN_300173	PEX16	NM_001012088.1	NM_001012088.1		311203	58865745	NM_001012088.1	Pex16	NP_001012088.1	ILMN_1376433	0005270465	S	1060	ATATATTTCTACAGTTGGGGCTGACAGGCACGCAGGAGCTGGTCCAGAGT	3	+	76778904-76778926:76778927-76778953	3q24	Rattus norvegicus peroxisomal biogenesis factor 16 (Pex16), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The assembly and arrangement of the membrane of a peroxisome [goid 16557] [evidence ISS]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence ISS]; The de novo formation of peroxisomes from the endoplasmic reticulum [goid 32581] [evidence ISS]; The targeting of proteins into the peroxisomal membrane. The process is not well understood, but both signals and mechanism differ from those involved in peroxisomal matrix protein import [goid 45046] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	MGC109242	MGC109242
Rattus norvegicus	RefSeq	GI_62662093-S	ILMN_62798	LOC498565	XM_573840.2	XM_573840.2		498565	109502057	XM_573840.2	LOC498565	XP_573840.1	ILMN_1354558	0006860162	S	583	CTACACCGCAGATATTGAATCCTTGTGTCCTGTTACTTTTGAGTAAATCA	15|NW_047459.1	-	51375-51379:51380-51424		PREDICTED: Rattus norvegicus hypothetical LOC498565 (LOC498565), mRNA.					
Rattus norvegicus	RefSeq	GI_62656444-S	ILMN_289113	LOC691506	XM_001077297.1	XM_001077297.1		691506	109488191	XM_001077297.1	LOC691506	XP_001077297.1	ILMN_1372687	0005360048	S	454	GCTACAATGAGCTACCTGCTTGGAGGAGGCATGAAGCAGGAAGACAATGC	10	+	48454271-48454309:48455024-48455034	10q23	PREDICTED: Rattus norvegicus similar to Tetratricopeptide repeat protein 19 (TPR repeat protein 19) (LOC691506), mRNA.					
Rattus norvegicus	RefSeq	GI_47577994-S	ILMN_281709	OLR1085	NM_001000420.1	NM_001000420.1		299589	47577994	NM_001000420.1	Olr1085	NP_001000420.1	ILMN_1350350	0000840458	S	444	GTCCTGGGTTGTCAGCATCTTCCATGCCTTATTACAGAGCTTAATGGTGC	7	+	12337848-12337897	7q11	Rattus norvegicus olfactory receptor 1085 (Olr1085), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665406-S	ILMN_275447	RGD1560840_PREDICTED	XM_001077922.1	XM_001077922.1		498963	109508939	XM_001077922.1	RGD1560840_predicted	XP_001077922.1	ILMN_1354334	0000730735	S	1326	TGCAACGAGCACAGGTGGATACCCTGCTCTATGACAGTCCTGGGGCCCAT				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610039E05 (predicted), transcript variant 1 (RGD1560840_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651146-S	ILMN_49275	GPR68_PREDICTED	XM_234483.3	XM_234483.3		314386	109478639	XM_234483.3	Gpr68_predicted	XP_234483.2	ILMN_1373704	0005270735	S	1050	GTTAACCAAGCTCCACTCAGCCTTCCAGACCCCTAACTCACTGGGATTGG	6	-	125135644-125135693	6q32	PREDICTED: Rattus norvegicus G protein-coupled receptor 68 (predicted) (Gpr68_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644163-S	ILMN_62395	LOC362012	XM_342311.3	XM_342311.3		362012	109465350	XM_342311.3	LOC362012	XP_342312.3	ILMN_1352149	0002320746	S	2991	TGAGCTGCTTTGGCACGTCAGTTGGTCAAGAAGGAGGGGTGGCATGAGGG	2	-	203164700-203164749	2q34	PREDICTED: Rattus norvegicus similar to family with sequence similarity 40, member A (LOC362012), mRNA.					
Rattus norvegicus	Unigene	Rn.13832	ILMN_160950	KCTD12_PREDICTED	Rn.13832		Rn.13832		62661813	XM_344450	Kctd12_predicted		ILMN_1530456	0005910435	S	2146	AACATTTATTTTCTTGTTGGTTGTATTTCCTCATTTTTAGCCTATTTACT					PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 12 (predicted) (Kctd12_predicted),					
Rattus norvegicus	RefSeq	GI_62666062-S	ILMN_56346	LOC298973	XM_213066.3	XM_213066.3		298973	62666062	XM_213066.3	LOC298973	XP_213066.3	ILMN_1352901	0002850541	S	12	CAGACGGAGCGACCTGCGTTCAATCAATACAGTGGAAGTGATGCTCAGGA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC298973), mRNA.					
Rattus norvegicus	RefSeq	GI_62660253-S	ILMN_56597	LOC501905	XM_577329.1	XM_577329.1		501905	62660253	XM_577329.1	LOC501905	XP_577329.1	ILMN_1358303	0001500471	S	881	CCTGATCCAGAAGGTCAGCACTGGGGACTCAGCCTTTCTCAGGCAACGCT					PREDICTED: Rattus norvegicus similar to family with sequence similarity 47, member A (LOC501905), mRNA.					
Rattus norvegicus	RefSeq	GI_27674270-S	ILMN_50028	LOC301267	XM_238578.1	XM_238578.1		301267	27674270	XM_238578.1	LOC301267	XP_238578.1	ILMN_1359060	0000610181	S	850	GAAGACCAGCGCCCTCTGGCGGTTGAAGTGAGAAAAACCCCTCTAGGAAG					PREDICTED: Rattus norvegicus hypothetical LOC301267 (LOC301267), mRNA.					
Rattus norvegicus	RefSeq	GI_62662708-S	ILMN_54126	LOC498637	XM_573918.1	XM_573918.1		498637	62662708	XM_573918.1	LOC498637	XP_573918.1	ILMN_1368531	0005690504	S	1002	GAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATAACCCTGGCAGGG					PREDICTED: Rattus norvegicus similar to Da1-12 (LOC498637), mRNA.					
Rattus norvegicus	RefSeq	GI_62662400-S	ILMN_271467	PGLS_PREDICTED	XM_001069380.1	XM_001069380.1		290636	109503949	XM_001069380.1	Pgls_predicted	XP_001069380.1	ILMN_1364331	0006400450	S	1292	GCTGCACGGCTGCTGTCTGTGCCCTTCGAGAAGCATTCCACGTTATAGGG				16p14	PREDICTED: Rattus norvegicus 6-phosphogluconolactonase (predicted) (Pgls_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577608-S	ILMN_265049	OLR536	NM_001000564.1	NM_001000564.1		366103	47577608	NM_001000564.1	Olr536	NP_001000564.1	ILMN_1367228	0007100008	S	410	CCCAGAAGGTGTGCAACTGGCTGGCAGTAATACCATACATGATAGGCTTC	3	-	70404460-70404509	3q24	Rattus norvegicus olfactory receptor 536 (Olr536), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr536	Olr536
Rattus norvegicus	Unigene	Rn.7938	ILMN_161260	RN.7938	Rn.7938		Rn.7938		50379073	CO566477			ILMN_1530336	0000840471	S	105	ATGAGGAAAGAAGTTGATGACAGGACCAACTCTGACTTCCCTTTATAACT					AGENCOURT_28540569 NIH_MGC_249 Rattus norvegicus cDNA clone IMAGE:7376432 5', mRNA					
Rattus norvegicus	RefSeq	GI_62665374-S	ILMN_68575	LOC498961	XM_579895.1	XM_579895.1		498961	62665374	XM_579895.1	LOC498961	XP_579895.1	ILMN_1360776	0003450324	S	33	GCCTCGGGTCAGCAACAGTTCTCATGTGGATGGAGCCAGGGATCGTACCT					PREDICTED: Rattus norvegicus LOC498961 (LOC498961), mRNA.					
Rattus norvegicus	RefSeq	GI_62658514	ILMN_272392	TTYH3_PREDICTED	XM_001073693.1	XM_001073693.1		304315	109496654	XM_001073693.1	Ttyh3_predicted	XP_001073693.1	ILMN_1651087	0004060020	S	1326	TCCACACACCTGGCAACAGAAGAGAGGCGCAGATGAGGATGGGGAAGAGG				12q11	PREDICTED: Rattus norvegicus tweety homolog 3 (Drosophila) (predicted) (Ttyh3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642372-S	ILMN_61237	LOC499359	XM_574672.1	XM_574672.1		499359	62642372	XM_574672.1	LOC499359	XP_574672.1	ILMN_1349640	0000730369	S	244	GTGTCCACGTATGAGTCACCAAGGGCACCTACCAGGCTGCTCACCAAGTC					PREDICTED: Rattus norvegicus similar to UPF0197 protein C11orf10 homolog (LOC499359), mRNA.					
Rattus norvegicus	RefSeq	GI_62653235-S	ILMN_275558	RGD1563367_PREDICTED	XM_576355.1	XM_576355.1		500944	62653235	XM_576355.1	RGD1563367_predicted	XP_576355.1	ILMN_1365010	0000780609	S	1121	CAGGACCTCGCAGGAACTGGTTGAGGAGAGGCCAGAAAAGCTGTCCATAC	8	-	11211787-11211836	8q11	PREDICTED: Rattus norvegicus similar to jumonji domain containing 2D (predicted) (RGD1563367_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660957-S	ILMN_66721	LOC498434	XM_573685.1	XM_573685.1		498434	62660957	XM_573685.1	LOC498434	XP_573685.1	ILMN_1367673	0005390739	S	4235	CTTTGTTGTGTGACCTGTTTGACCAGCACGGGGCCCATCTTTGATAAGTA				14q22	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor GPR75 (LOC498434), mRNA.					
Rattus norvegicus	RefSeq	GI_8392838-S	ILMN_289909	ACLY	NM_016987.1	NM_016987.1		24159	8392838	NM_016987.1	Acly	NP_058683.1	ILMN_1366910	0003840390	S	3967	TGTCAAGGGGAGGAGGGTTGGGGCCATTGTACCCTTAGCCATCGTCACAC	10	-	89421195-89421244	10q32.1	Rattus norvegicus ATP citrate lyase (Acly), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated [goid 6085] [evidence NAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]	Catalysis of the reaction: ADP + phosphate + acetyl-CoA + oxaloacetate = ATP + citrate + CoA [goid 3878] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: citrate = acetate + oxaloacetate [goid 8815] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ADP + phosphate + acetyl-CoA + oxaloacetate = ATP + citrate + CoA [goid 3878] [evidence IEA]; Catalysis of the reaction: ATP + succinate + CoA = ADP + succinyl-CoA + phosphate [goid 4775] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Clatp; MGC124629; ACL	Clatp; MGC124629; ACL
Rattus norvegicus	RefSeq	GI_62642401-S	ILMN_62659	LOC361768	XM_342060.2	XM_342060.2		361768	62642401	XM_342060.2	LOC361768	XP_342061.2	ILMN_1364139	0004280181	S	869	GAGTACAACAGCTGCCTTCCACGGCTCTCCCAAAGTAGCCAGGCATTGGG					PREDICTED: Rattus norvegicus similar to 9130011E15Rik protein (predicted) (LOC361768), mRNA.					
Rattus norvegicus	RefSeq	GI_62645721-S	ILMN_268598	ARHGAP1_PREDICTED	XM_001078147.1	XM_001078147.1		311193	109470322	XM_001078147.1	Arhgap1_predicted	XP_001078147.1	ILMN_1374973	0006420358	S	1297	CACTAACCTGGCTGTGGTCTTCGGCCCTAACCTGCTGTGGGCTAAGGATG				3q24	PREDICTED: Rattus norvegicus Rho GTPase activating protein 1 (predicted) (Arhgap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576950-S	ILMN_298780	OLR252	NM_001000219.1	NM_001000219.1		293398	47576950	NM_001000219.1	Olr252	NP_001000219.1	ILMN_1362143	0006100452	S	693	GCGTTCCACTGAGGGTCGACAGAAAGCCTTCTCTACCTGCACTTCCCACC	1	-	165589813-165589862	1q33	Rattus norvegicus olfactory receptor 252 (Olr252), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr252	Olr252
Rattus norvegicus	RefSeq	GI_20806114-S	ILMN_264890	RPL41	NM_139083.1	NM_139083.1		124440	20806114	NM_139083.1	Rpl41	NP_620783.1	ILMN_1367281	0001170551	S	135	CTGCGGGAGCAGAAGTAAGGGATGCTGAAGCCCGGAACAAGTGGTTGGAC	7	-	1840144-1840193	7q11	Rattus norvegicus ribosomal protein L41 (Rpl41), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence TAS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58219515-S	ILMN_282935	PREPL	NM_001010951.1	NM_001010951.1		298771	58219515	NM_001010951.1	Prepl	NP_001010951.1	ILMN_1370385	0000110114	S	1869	CTTAAGGAGGCCGTCGCAGAGCACAGCAAGGGAGCAGGGGAAGGCTATCA	6	-	8420398-8420405:8420896-8420937	6q12	Rattus norvegicus prolyl endopeptidase-like (Prepl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Prepl; MGC105586	Prepl; MGC105586
Rattus norvegicus	RefSeq	GI_62655252-S	ILMN_52472	STK11IP_PREDICTED	XM_237307.4	XM_237307.4		301535	109486195	XM_237307.4	Stk11ip_predicted	XP_237307.4	ILMN_1363549	0002450041	S	3296	CGATGAGGTGTCTCGGCTGGAGAGTTTCTGGGCACTCCGTGTTGTGTGTG	9	+	74813107-74813113:74813808-74813850	9q33	PREDICTED: Rattus norvegicus serine/threonine kinase 11 interacting protein (predicted) (Stk11ip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870137-S	ILMN_67694	LOC363862	XM_344070.1	XM_344070.1		363862	34870137	XM_344070.1	LOC363862	XP_344071.1	ILMN_1350487	0002470373	S	185	CATGGCCGTATGCGGTAGAGAAGGCCGTTCAGGTCATGAAATTGGGAAGG				12p12	PREDICTED: Rattus norvegicus similar to Chain A, Solution Structure Of A Bola-Like Protein From Mus Musculus (LOC363862), mRNA.					
Rattus norvegicus	Unigene	Rn.14619	ILMN_160911	RN.14619	Rn.14619		Rn.14619		49494010	CO386419			ILMN_1530319	0000070066	S	200	TGAGAACCAACTGGAACATCATTTGGATTGTTTTATCATATTCTGCAAAT					AGENCOURT_26620935 NIH_MGC_253 Rattus norvegicus cDNA clone IMAGE:7303279 5', mRNA					
Rattus norvegicus	RefSeq	GI_62667027-S	ILMN_62449	LOC296866	XM_231462.2	XM_231462.2		296866	62667027	XM_231462.2	LOC296866	XP_231462.2	ILMN_1370067	0002260369	S	661	GTCTGACCAAGGGCTTCATCTGGAAGGGGGTGAACTCTGTGAGGAAGGTG				Xq31	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 83 (LOC296866), mRNA.					
Rattus norvegicus	RefSeq	GI_62644646	ILMN_269680	PTGFR	NM_013115.1	NM_013115.1		25652	6981435	NM_013115.1	Ptgfr	NP_037247.1	ILMN_1650639	0000580739	S	2582	GCTACCATGTGGATACTAGGAATTGAGCCCAGGTTCTCTGGAAGAGCAGC	2|NW_047650.1	+	109973-110022		Rattus norvegicus prostaglandin F receptor (Ptgfr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity [goid 4958] [evidence IEA]; Combining with a thromboxane (TXA) to initiate a change in cell activity [goid 4960] [evidence IEA]	PF2AR	PF2AR
Rattus norvegicus	RefSeq	GI_62656883	ILMN_52990	TTLL6_PREDICTED	XM_220904.4	XM_220904.4		287646	109488870	XM_220904.4	Ttll6_predicted	XP_220904.4	ILMN_1650561	0000130524	S	2209	CCCAGCAGAAGCCATTCGGGCACTACGACAAGGGACTCTGGCACACAGGA	10	+	84886734-84886783	10q31	PREDICTED: Rattus norvegicus tubulin tyrosine ligase-like family, member 6 (predicted) (Ttll6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302048-S	ILMN_266807	CYB5R3	NM_138877.1	NM_138877.1		25035	20302048	NM_138877.1	Cyb5r3	NP_620232.1	ILMN_1365557	0002850433	S	1577	CCAGGAGTTCCTTGGGTCAGCACGTGGACCCTTCCAAAACCCCACACACT	7	-	121188087-121188136	7q34	Rattus norvegicus cytochrome b5 reductase 3 (Cyb5r3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence TAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [pmid 14561759] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence TAS]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]; Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Dia1; Nadhcb5	Dia1; Nadhcb5
Rattus norvegicus	RefSeq	GI_56606081-S	ILMN_281614	C1QA	NM_001008515.1	NM_001008515.1		298566	56606081	NM_001008515.1	C1qa	NP_001008515.1	ILMN_1352382	0002450497	S	674	GACGAGGTGTGGATTGAGAAGGACCCAGCAAAGGGCCGCATTTACCAGGG	5	-	155662611-155662660	5q36	Rattus norvegicus complement component 1, q subcomponent, alpha polypeptide (C1qa), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence ISS]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC105755	MGC105755
Rattus norvegicus	RefSeq	GI_62665421-S	ILMN_48054	AFG3L1_PREDICTED	XM_341714.3	XM_341714.3		361436	109508180	XM_341714.3	Afg3l1_predicted	XP_341715.2	ILMN_1350931	0001050017	S	2316	TTCCTGAGGGGCTGAAAGACTGGAATCAGGGGCGGGAGGAACGAGGCACT	19	+	53821477-53821526	19q12	PREDICTED: Rattus norvegicus AFG3(ATPase family gene 3)-like 1 (yeast) (predicted) (Afg3l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576686-S	ILMN_300203	OLR848	NM_001000402.1	NM_001000402.1		298044	47576686	NM_001000402.1	Olr848	NP_001000402.1	ILMN_1366079	0005360035	S	462	CAACTCAGTTGTGCAAACATCCCTTGTCATGAGGTTGCCTTTCTGTGGGT	5	+	70213014-70213063	5q24	Rattus norvegicus olfactory receptor 848 (Olr848), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr5-70217666-70218619_ORF; Olr848	ratchr5-70217666-70218619_ORF; Olr848
Rattus norvegicus	RefSeq	GI_62078940-S	ILMN_299119	METRNL	NM_001014104.1	NM_001014104.1		316842	62078940	NM_001014104.1	Metrnl	NP_001014126.1	ILMN_1371491	0005910347	S	1230	CGCCTGGTGCTTGAACTGGGAAGGGAGGTACATGCTGCTCTGACCCCTTA	Un|NW_047838.1	-	83306-83355		Rattus norvegicus meteorin, glial cell differentiation regulator-like (Metrnl), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_58865481-A	ILMN_297320	SLC39A8	NM_001011952.1	NM_001011952.1		295455	58865481	NM_001011952.1	Slc39a8	NP_001011952.1	ILMN_1376355	0001690575	S	2630	GGGCTGTGTCAGAGACTGATGGTGGAGGAAGCGTGTGTTCATTAGGGGTG	2	+	233403016-233403065	2q43	Rattus norvegicus solute carrier family 39 (metal ion transporter), member 8 (Slc39a8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]	MGC108852	MGC108852
Rattus norvegicus	RefSeq	GI_62655383-S	ILMN_66792	LOC316616	XM_237386.3	XM_237386.3		316616	62655383	XM_237386.3	LOC316616	XP_237386.3	ILMN_1361193	0002320673	S	3506	GTCTGGGTGGAGGACAGCCTCACAACTGTCTCATCTCTCCAGCAGCAGTG				9q35	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22527 (predicted) (LOC316616), mRNA.					
Rattus norvegicus	RefSeq	GI_17105347-S	ILMN_293324	BAIAP2	NM_057196.1	NM_057196.1		117542	17105347	NM_057196.1	Baiap2	NP_476544.1	ILMN_1365343	0004150446	S	1546	AGTTCCTGCCTTCTCTCAGGGTCTGGATGACTACGGGGCACGGTCTGTGA	10	+	109413007-109413013:109413505-109413535:109413536-109413547	10q32.3	Rattus norvegicus BAI1-associated protein 2 (Baiap2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Irsp53	Irsp53
Rattus norvegicus	RefSeq	GI_62655189-S	ILMN_48477	SMARCAL1_PREDICTED	XM_237241.4	XM_237241.4		316477	109486243	XM_237241.4	Smarcal1_predicted	XP_237241.4	ILMN_1356620	0000110725	S	2621	GCTCGCAGGAGCTAGGAGATATCACAGATGAGAACGCCTTGGCAGACAGC	9	+	71827585-71827634	9q33	PREDICTED: Rattus norvegicus Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (predicted) (Smarcal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658223-S	ILMN_56872	THAP7	XM_213578.4	XM_213578.4		287944	109493607	XM_213578.4	Thap7	XP_213578.4	ILMN_1367818	0003840167	S	2266	TAGCTAGAGACTGCTGTTTGGCTCCTCCCCAGACCATGGCCAAAGCCCCA	11	+	85477430-85477479	11q23	PREDICTED: Rattus norvegicus THAP domain containing 7 (Thap7), mRNA.					
Rattus norvegicus	RefSeq	GI_62658221	ILMN_56872	THAP7	XM_213578.4	XM_213578.4		287944	109493607	XM_213578.4	Thap7	XP_213578.4	ILMN_1649997	0000540364	S	933	TGGCTGTGTCGGCCTCCTTAAGTCTGTCCGGAGCAACAAATCGTCTGGCC	11	+	85454540-85454589	11q23	PREDICTED: Rattus norvegicus THAP domain containing 7 (Thap7), mRNA.					
Rattus norvegicus	RefSeq	GI_62659546-S	ILMN_55955	RGD1565760_PREDICTED	XM_573482.2	XM_573482.2		498257	109498052	XM_573482.2	RGD1565760_predicted	XP_573482.1	ILMN_1350161	0003140647	S	395	AGGGGGGAACCCCATCCCTCAAATTGGCAGCACCCCAGAGTTACCCGGTG	13	-	71112805-71112854	13q21	PREDICTED: Rattus norvegicus similar to hypothetical protein A230106N23 (predicted) (RGD1565760_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8567397-S	ILMN_284257	PDE3A	XM_001073892.1	XM_001073892.1		50678	109474446	XM_001073892.1	Pde3a	XP_001073892.1	ILMN_1357976	0006040605	S	3482	GAAGAGGAGCAGTGTTTATCAGGCACAGAGAACCAGGCCCCAGACCAGGC				4q44	PREDICTED: Rattus norvegicus phosphodiesterase 3A (Pde3a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence TAS]; A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence IEP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that modulates the frequency, rate or extent of meiosis, the process by which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes [goid 40020] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence TAS]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649399-S	ILMN_279604	PRPF38A_PREDICTED	XM_001060413.1	XM_001060413.1		298374	109476886	XM_001060413.1	Prpf38a_predicted	XP_001060413.1	ILMN_1352591	0001580086	S	957	CGACGAGAAAGGCATAGGAGCAAGAGTCCACGACGCCATCGAAGCAGGTC				5q35	PREDICTED: Rattus norvegicus PRP38 pre-mRNA processing factor 38 (yeast) domain containing A (predicted) (Prpf38a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928877-S	ILMN_277044	DLG3	NM_031639.1	NM_031639.1		58948	13928877	NM_031639.1	Dlg3	NP_113827.1	ILMN_1357624	0004150465	S	3653	TGGGGCCAACCTACAGGAAGAGAAGGGGCTTTGGCTGGGAGCTTGAGCTT	X	+	88828409-88828458	Xq31	Rattus norvegicus discs, large homolog 3 (Drosophila) (Dlg3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 1127911] [evidence TAS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 12738960] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 8702950] [evidence TAS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [pmid 12738960] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 12738960] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [pmid 12738960] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 12738960] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [pmid 11274188] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [pmid 8702950] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62663963-I	ILMN_63409	MLLT10_PREDICTED	XM_577602.1	XM_577602.1		361285	62663963	XM_577602.1	Mllt10_predicted	XP_577602.1	ILMN_1376119	0003610176	S	1682	GCAGGCTTCTGAGTCTCTCAGAGTAGGAAGCAGCCGTGTGCTGGTCTGTC				17q12.3	PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (predicted) (Mllt10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648210-S	ILMN_57842	LOC500332	XM_575684.1	XM_575684.1		500332	62648210	XM_575684.1	LOC500332	XP_575684.1	ILMN_1364757	0006510563	S	2	GAGGACCTGGTGGCAAAAGTCTTCCTGGAGTAAAGTGCGCCAAGGAAAGG					PREDICTED: Rattus norvegicus similar to C lectin-related protein C (LOC500332), mRNA.					
Rattus norvegicus	RefSeq	GI_57164018-S	ILMN_273363	B4GALT3	NM_001009539.1	NM_001009539.1		494342	57164018	NM_001009539.1	B4galt3	NP_001009539.1	ILMN_1367011	0000940333	S	1724	TTAGGAGCAGGGCTGGATCCCACGTCCCTTCCTCGTCTGTGGACATTGCT	13	+	87170128-87170177	13q24	Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 (B4galt3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: UDP-galactose + N-acetyl-beta-D-glucosaminylglycopeptide = UDP + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminylglycopeptide [goid 3831] [evidence IEA]; Catalysis of the reaction: UDP-galactose + N-acetyl-D-glucosamine = UDP + N-acetyllactosamine [goid 3945] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC72586	MGC72586
Rattus norvegicus	RefSeq	GI_62717924	ILMN_268384	LOC367415	XM_001053976.1	XM_001053976.1		367415	109510072	XM_001053976.1	LOC367415	XP_001053976.1	ILMN_1651129	0003800128	S	670	GCGCAGAGGAGGAGAAAGAAGAGTTATGAAGATGAGGCGGCTTTTCCAGG					PREDICTED: Rattus norvegicus similar to phospholipase A2, group XIIB (LOC367415), mRNA.					
Rattus norvegicus	RefSeq	GI_62666411-S	ILMN_51199	LOC501504	XM_576905.1	XM_576905.1		501504	62666411	XM_576905.1	LOC501504	XP_576905.1	ILMN_1367086	0002480064	S	935	GGGAAGAAGGCCCACCTATACATGGAAATTGAACAATGCTGTACTCAATG					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC501504), mRNA.					
Rattus norvegicus	RefSeq	GI_62644376-S	ILMN_270164	RGD1559637_PREDICTED	XM_001076757.1	XM_001076757.1		502596	109467629	XM_001076757.1	RGD1559637_predicted	XP_001076757.1	ILMN_1371524	0004850113	S	1993	GGACACGGAGGCACAAAGATGATGGGGAAAAGTTGCTGCTATGCTCCCGG				2q43	PREDICTED: Rattus norvegicus similar to FLJ44691 protein (predicted) (RGD1559637_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34859992-S	ILMN_270164	RGD1559637_PREDICTED	XM_001076757.1	XM_001076757.1		502596	109467629	XM_001076757.1	RGD1559637_predicted	XP_001076757.1	ILMN_1368790	0003450280	S	319	ACTCGGTGGCCAGCATAGAGACCAGGAGCTTCTACAACCTAAAGCAGCTG				2q43	PREDICTED: Rattus norvegicus similar to FLJ44691 protein (predicted) (RGD1559637_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560078-S	ILMN_289557	KIT	NM_022264.1	NM_022264.1		64030	11560078	NM_022264.1	Kit	NP_071600.1	ILMN_1350459	0005670400	S	3505	GGCCTAAGAAGTCTGGTCATGCTGAGAACGAGACCTAGGCTGAGACGGCG	14	-	34906307-34906356	14p11	Rattus norvegicus v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog (Kit), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence IMP]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IDA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the assembly of pseudopodia [goid 31274] [evidence IMP]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway [goid 45747] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; Any process that modulates the frequency, rate or extent of the deposition of coloring matter occurring during development [goid 48070] [evidence ISS]; The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line [goid 48103] [evidence IMP]; A process that increases long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48170] [evidence IMP]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence IMP]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IDA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with stem cell factor, a cytokine that stimulates mast cell growth and differentiation, to initiate a change in cell activity [goid 5020] [evidence IEA]; Combining with stem cell factor, a cytokine that stimulates mast cell growth and differentiation, to initiate a change in cell activity [goid 5020] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with stem cell factor, a cytokine that stimulates mast cell growth and differentiation, to initiate a change in cell activity [goid 5020] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663643-S	ILMN_60650	LOC498761	XM_574046.1	XM_574046.1		498761	62663643	XM_574046.1	LOC498761	XP_574046.1	ILMN_1356941	0006020670	S	743	AAGAAACACCTCCCAAACTATGAAAGCCAGAAGATCCTTGACAGATGTCA					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498761), mRNA.					
Rattus norvegicus	RefSeq	GI_62666133-S	ILMN_59842	LOC499458	XM_574782.1	XM_574782.1		499458	62666133	XM_574782.1	LOC499458	XP_574782.1	ILMN_1374301	0001190685	S	428	AGACACCATGAGAAGATCAAACCTAAGGATTATAGGGGAGGGCCCAGGAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499458), mRNA.					
Rattus norvegicus	RefSeq	GI_62660233-S	ILMN_55570	RGD1564102_PREDICTED	XM_577318.2	XM_577318.2		501895	109499508	XM_577318.2	RGD1564102_predicted	XP_577318.2	ILMN_1358939	0006770142	S	864	CATGAGTCAAGTCCTAGGGTGCCTGATGACGCCTTTGGAGACCTTCTCAG	14	-	15556922-15556954:15557700-15557716	14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1564102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666776-S	ILMN_48666	LOC503434	XM_578979.1	XM_578979.1		503434	62666776	XM_578979.1	LOC503434	XP_578979.1	ILMN_1358750	0004810215	S	576	ATGGGGTCCGGACGACAGTTGGGGGAAAAAATAGGGTTGCGGAAGCATTG					PREDICTED: Rattus norvegicus similar to High mobility group protein 1-like 10 (HMG-1L10) (LOC503434), mRNA.					
Rattus norvegicus	RefSeq	GI_62661111-S	ILMN_274810	NKIRAS1_PREDICTED	XM_001067073.1	XM_001067073.1		305751	109502176	XM_001067073.1	Nkiras1_predicted	XP_001067073.1	ILMN_1361699	0003850273	S	2529	AGTCCTGCTCAGCTGGGATTAGAAGTGTGTACCACCATGCTGTCTTGGCC				15p16	PREDICTED: Rattus norvegicus NFKB inhibitor interacting Ras-like protein 1 (predicted) (Nkiras1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30061482-A	ILMN_292110	HAP1	NM_177982.1	NM_177982.1		29430	30061482	NM_177982.1	Hap1	NP_817091.1	ILMN_1376870	0004230324	A	2777	CCTCTCACGTAAAGGGACTTCCCCAGTCCTGGTTGGCTTTTGGAACCTGG	10	-	89285672-89285721	10q32.1	Rattus norvegicus huntingtin-associated protein 1 (Hap1), transcript variant 2, mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence TAS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence TAS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IPI]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs [goid 45022] [evidence TAS]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654272-S	ILMN_48880	MST1R_PREDICTED	XM_236628.4	XM_236628.4		300999	109483883	XM_236628.4	Mst1r_predicted	XP_236628.3	ILMN_1362914	0006980129	S	4203	CCCGATTCACTGTACCAGGTGATGCTTCGATGCTGGGAGGCTGATCCAGC	8	+	113187152-113187162:113189253-113189291	8q32	PREDICTED: Rattus norvegicus macrophage stimulating 1 receptor (c-met-related tyrosine kinase) (predicted) (Mst1r_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576312-S	ILMN_277658	OLR1515	NM_001001098.1	NM_001001098.1		405994	47576312	NM_001001098.1	Olr1515	NP_001001098.1	ILMN_1362342	0006420471	S	689	CTGCCCAGGGGAGACGCAAGGCCTTTTCTACCTGTGGGTCACACCTTTCT	10	+	61517168-61517217	10q24	Rattus norvegicus olfactory receptor 1515 (Olr1515), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1515	Olr1515
Rattus norvegicus	RefSeq	GI_62658243-S	ILMN_57866	LOC498118	XM_579788.1	XM_579788.1		498118	62658243	XM_579788.1	LOC498118	XP_579788.1	ILMN_1350647	0000450059	S	1303	GGATGGCTCTGGCCATACTGTAGGGAAGCCAGGCCAATTTGTGTGACGCA					PREDICTED: Rattus norvegicus LOC498118 (LOC498118), mRNA.					
Rattus norvegicus	RefSeq	GI_62667609-S	ILMN_49074	LOC503488	XM_579044.1	XM_579044.1		503488	62667609	XM_579044.1	LOC503488	XP_579044.1	ILMN_1371886	0006370066	S	275	GTCCACCACATGGTTCTTTGCAGCAAAGCTTCAGAAGCAGCTGTCTGAGC					PREDICTED: Rattus norvegicus similar to mKIAA0609 protein (LOC503488), mRNA.					
Rattus norvegicus	RefSeq	GI_62638558-S	ILMN_55622	TCP10B_PREDICTED	XM_217868.3	XM_217868.3		308169	62638558	XM_217868.3	Tcp10b_predicted	XP_217868.3	ILMN_1362031	0002650242	S	1647	GACAGTGAAAAGCTCCTCCACACTCACACGGTTGGCTTCTGCGTGGCTCC				1q11	PREDICTED: Rattus norvegicus t-complex protein 10b (predicted) (Tcp10b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653985-S	ILMN_57311	LOC503212	XM_578737.1	XM_578737.1		503212	62653985	XM_578737.1	LOC503212	XP_578737.1	ILMN_1356572	0004810286	S	587	CGTGGGTGTCAAGCCAACGTGCATACAGAAAACACCAGCCGCAGCAGTGG					PREDICTED: Rattus norvegicus LOC503212 (LOC503212), mRNA.					
Rattus norvegicus	RefSeq	GI_34878195-S	ILMN_60746	LOC361298	XM_346953.1	XM_346953.1		361298	34878195	XM_346953.1	LOC361298	XP_346954.1	ILMN_1361241	0004010204	S	199	AGGCCTGACGCTTGTGATGAGCAATCTCACTGCATGGTGCTGGCTTGCCC					PREDICTED: Rattus norvegicus hypothetical LOC361298 (LOC361298), mRNA.					
Rattus norvegicus	RefSeq	GI_62638521-S	ILMN_53813	RGD1561992_PREDICTED	XM_574310.2	XM_574310.2		499017	109457728	XM_574310.2	RGD1561992_predicted	XP_574310.2	ILMN_1349869	0003840333	S	1943	CCCAGTCCAAGCTTCAGTGGCAGAAAGTCCTGTCCAGCCCCAACTTATGG	1	+	41177429-41177478	1q11	PREDICTED: Rattus norvegicus similar to synaptotagmin-like protein 3-a (predicted) (RGD1561992_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639151-S	ILMN_276626	RGD1562941_PREDICTED	XM_001076857.1	XM_001076857.1		499099	109461442	XM_001076857.1	RGD1562941_predicted	XP_001076857.1	ILMN_1358022	0004200692	S	2787	AGGAGGTGGACTGTCTTCCACATTGAGCATTCAGGGGTGCATGGCCTCAC				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1190003K14 (predicted) (RGD1562941_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649241-S	ILMN_64970	LOC500500	XM_580075.1	XM_580075.1		500500	62649241	XM_580075.1	LOC500500	XP_580075.1	ILMN_1368219	0000110687	S	810	CTGGAGGAGTGCTTGGCTGGTATGTGTGAGGTCCTGGGTTCAATCCCGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC088436 (LOC500500), mRNA.					
Rattus norvegicus	RefSeq	GI_62647729-S	ILMN_57758	LOC500241	XM_580051.1	XM_580051.1		500241	62647729	XM_580051.1	LOC500241	XP_580051.1	ILMN_1367674	0004060075	S	504	TGGATGGGGATGGGGGTGGGGCTGGAGATGTGGCTCAGTGGGGTTAAAAA					PREDICTED: Rattus norvegicus LOC500241 (LOC500241), mRNA.					
Rattus norvegicus	RefSeq	GI_47577434-S	ILMN_297806	OLR462	NM_001000295.1	NM_001000295.1		295732	47577434	NM_001000295.1	Olr462	NP_001000295.1	ILMN_1355898	0006760022	S	765	CATGTTCATGTACCTGAGGCCAACATCCAGCTACTCCCTGGACCAAGACA	3	-	69088056-69088105	3q24	Rattus norvegicus olfactory receptor 462 (Olr462), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr462	Olr462
Rattus norvegicus	RefSeq	GI_56090376-S	ILMN_288952	METTL6	NM_001007623.1	NM_001007623.1		290564	56090376	NM_001007623.1	Mettl6	NP_001007624.1	ILMN_1368543	0003170592	S	1350	TGAGTGCTCTCTTCTGGCCTCTGCAGGTGGTGCACAGACATACATGCAGG	16	-	6924715-6924764	16p16	Rattus norvegicus methyltransferase like 6 (Mettl6), mRNA.			Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94452	MGC94452
Rattus norvegicus	RefSeq	GI_62639252-S	ILMN_268095	RGD1307390_PREDICTED	XR_009008.1	XR_009008.1		292680	109461337	XR_009008.1	RGD1307390_predicted		ILMN_1374940	0006770619	S	1553	GAGGATTTCTCCCAGTCAGTTTCCAAAAGTCGTCGTTGCCGTGGACGCGG				1q21	PREDICTED: Rattus norvegicus similar to BC282485_1 (predicted) (RGD1307390_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652678-S	ILMN_266938	ZNF251_PREDICTED	XM_001075451.1	XM_001075451.1		366954	109482507	XM_001075451.1	Znf251_predicted	XP_001075451.1	ILMN_1350796	0003190041	S	2552	ATGGCGGGACCTTCAGCCACAGTGCGAAACTTGTCCTGCAGTGGACGATC				7q34	PREDICTED: Rattus norvegicus zinc finger protein 251 (predicted) (Znf251_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576922-S	ILMN_284122	OLR23	NM_001000119.1	NM_001000119.1		293085	47576922	NM_001000119.1	Olr23	NP_001000119.1	ILMN_1352234	0000630452	S	594	GCTTCTCTCTGCTATTGTCATTGGCTGTAGCTGCTTTACGTTCATTGCTG	1	+	142677959-142678008	1q32	Rattus norvegicus olfactory receptor 23 (Olr23), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-142755772-142756767_ORF; Olr23	ratchr1-142755772-142756767_ORF; Olr23
Rattus norvegicus	RefSeq	GI_62639384-S	ILMN_52512	LOC308503	XM_218493.3	XM_218493.3		308503	62639384	XM_218493.3	LOC308503	XP_218493.2	ILMN_1349054	0004010524	S	1438	AAATTCTCTCCTGATGAAGACTTGAGCCCTGCCACTCAATGGGAGAACCA				1q21	PREDICTED: Rattus norvegicus similar to Set beta isoform (LOC308503), mRNA.					
Rattus norvegicus	RefSeq	GI_13786175-S	ILMN_278580	SLC7A7	NM_031341.1	NM_031341.1		83509	13786175	NM_031341.1	Slc7a7	NP_112631.1	ILMN_1358568	0006770113	S	1902	GTGGATAATGCAGACTGTGGCGGAAGCAGGCCATTTCTGAGGCTTGGTTC	15	-	32431873-32431922	15p13	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 (Slc7a7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]	y+LAT1	y+LAT1
Rattus norvegicus	RefSeq	GI_62657014-S	ILMN_60630	LOC360619	XM_340894.2	XM_340894.2		360619	62657014	XM_340894.2	LOC360619	XP_340895.2	ILMN_1368720	0001740368	S	704	GACAGCATGCAAACCTTCCCTCCCGGAGAAGCCAGGAGAAGGGAAGTTCA				10q31	PREDICTED: Rattus norvegicus similar to gasdermin (LOC360619), mRNA.					
Rattus norvegicus	RefSeq	GI_62664495-S	ILMN_60934	TCOF1_PREDICTED	XM_214552.4	XM_214552.4		291571	109506675	XM_214552.4	Tcof1_predicted	XP_214552.4	ILMN_1356578	0004540064	S	4148	GAAGCCGCAGTTCCAGGAGGAAGTGAGACAAGAACACGCCCCCTCTGAGT	18	-	56766983-56767032	18q12.1	PREDICTED: Rattus norvegicus Treacher Collins Franceschetti syndrome 1, homolog (predicted) (Tcof1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649559-S	ILMN_300193	FOXJ3_PREDICTED	XM_001074052.1	XM_001074052.1		313554	109477132	XM_001074052.1	Foxj3_predicted	XP_001074052.1	ILMN_1348889	0004810014	S	2069	GTCTCCCCGCCAGCACCCTCTGTAGCTTCTGACTGTTGTGATTTGGACAG				5q36	PREDICTED: Rattus norvegicus forkhead box J3 (predicted) (Foxj3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641982	ILMN_274237	RGD1305441	NM_001014245.1	NM_001014245.1		365407	62079220	NM_001014245.1	RGD1305441	NP_001014267.1	ILMN_1650496	0002850725	S	1313	ACCCAGCCGGTCCCGAGAGAGTAGCAGAAGGCACCGAGACTTGCTTCATA	1	+	213024677-213024726	1q43	Rattus norvegicus similar to RIKEN cDNA 5730453I16 (RGD1305441), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653001-S	ILMN_276523	LOC680317	XM_001056619.1	XM_001056619.1		680317	109481252	XM_001056619.1	LOC680317	XP_001056619.1	ILMN_1371984	0000130079	S	493	GACCGCTGCCTAGAGTTTGGGAACTGCTGTGAGGATTTTGGCAACCTGTG	7	-	136431261-136431310	7q36	PREDICTED: Rattus norvegicus similar to placental protein 11 related (LOC680317), mRNA.					
Rattus norvegicus	RefSeq	GI_62641834	ILMN_284542	LGALS12_PREDICTED	XM_001072771.1	XM_001072771.1		293710	109463462	XM_001072771.1	Lgals12_predicted	XP_001072771.1	ILMN_1650144	0002480609	S	872	GGGGCCACCCATGTTCCTGTGACACTCAGGGCTTCCTTCACAGACAGAAC				1q43	PREDICTED: Rattus norvegicus lectin, galactose binding, soluble 12 (predicted) (Lgals12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33414518-S	ILMN_295041	LYK5	NM_182820.1	NM_182820.1		303605	33414518	NM_182820.1	Lyk5	NP_877972.1	ILMN_1362000	0006940048	S	1582	TGTTGGCCCCAAGGCTCAAGTCCAAGCCCAGAGTTAACATTTGACCCAGG	10	-	95558223-95558272	10q32.1	Rattus norvegicus protein kinase LYK5 (Lyk5), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]	MGC93856	MGC93856
Rattus norvegicus	RefSeq	GI_62649000-S	ILMN_285700	RGD1564956_PREDICTED	XM_001057728.1	XM_001057728.1		500462	109476507	XM_001057728.1	RGD1564956_predicted	XP_001057728.1	ILMN_1353627	0002340193	S	2138	GTAAAGGCAAGCAGTGGGGGCGTGGCTAGGACAGATGGCTAGGGTCTACA				5q24	PREDICTED: Rattus norvegicus similar to calcium binding protein P22 (predicted) (RGD1564956_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981113-S	ILMN_290493	JAK3	NM_012855.1	NM_012855.1		25326	6981113	NM_012855.1	Jak3	NP_036987.1	ILMN_1355371	0002570156	S	3709	GGGGGCTGTGAAACCTCAGCATGGTCTCCTGAAAGATTGGGTTCTGGGAG	16	+	18889373-18889422	16p14	Rattus norvegicus Janus kinase 3 (Jak3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IDA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IMP]; The process of introducing a phosphate group to a tyrosine residue of a Stat5 protein [goid 42506] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IMP]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA];  [goid 4718] [evidence ISS];  [goid 4718] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IC ]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RATJAK3	RATJAK3
Rattus norvegicus	RefSeq	GI_47576786-S	ILMN_267989	OLR830	NM_001000900.1	NM_001000900.1		405210	47576786	NM_001000900.1	Olr830	NP_001000900.1	ILMN_1369776	0006940706	S	402	TTGCAAACCTCTGCACTACCCAGCCATCATGAACCCCAGGGTCTGTTTCC	4	+	152879769-152879818	4q42	Rattus norvegicus olfactory receptor 830 (Olr830), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr830	Olr830
Rattus norvegicus	RefSeq	GI_62640893-S	ILMN_278253	RGD1305335_PREDICTED	XM_001062115.1	XM_001062115.1		293107	109462415	XM_001062115.1	RGD1305335_predicted	XP_001062115.1	ILMN_1371370	0001740487	S	1136	CCATGGCCAAGAAGCATGCGCTAGAACGCTTTGAGCAAGAGGCAGTGGCG				1q32	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1305335_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649361-S	ILMN_47922	LOC502974	XM_578480.1	XM_578480.1		502974	62649361	XM_578480.1	LOC502974	XP_578480.1	ILMN_1363994	0005360731	S	1282	GGCCCGGGCTGAGAGAACATTCGGTGCAGCTTTGCTATGAGAAGCTGAAG				5q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732496O08 (LOC502974), mRNA.					
Rattus norvegicus	RefSeq	GI_62663618-S	ILMN_287365	TRIM27_PREDICTED	XM_001059726.1	XM_001059726.1		291171	109505940	XM_001059726.1	Trim27_predicted	XP_001059726.1	ILMN_1374685	0000510465	S	2387	ACTCGGGAGGGAAGAGTGCGGCTCCTTTGATCATCTGCCCTATGAGTGGG				17q11	PREDICTED: Rattus norvegicus tripartite motif protein 27 (predicted) (Trim27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955163-S	ILMN_287638	LIPOGENIN	NM_145790.1	NM_145790.1		252964	21955163	NM_145790.1	Lipogenin	NP_665733.1	ILMN_1365612	0005720112	S	1049	GGCCTCACAGACTTTGGCTCACCATGCATGAGACCATTGAAGAGGCACTG	4	+	55625078-55625127	4q22	Rattus norvegicus Lipogenin (Lipogenin), mRNA.					
Rattus norvegicus	RefSeq	GI_62651266-S	ILMN_276352	RCOR1_PREDICTED	XM_001071532.1	XM_001071532.1		314458	109480008	XM_001071532.1	Rcor1_predicted	XP_001071532.1	ILMN_1360111	0006940441	S	1284	AGTTTTACAGGAGTGGGAAGCCGAGCATGGCAAAGAGGAGGCCAACGGGC				6q32	PREDICTED: Rattus norvegicus REST corepressor 1 (predicted) (Rcor1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647639-S	ILMN_53052	LOC500213	XM_575564.2	XM_575564.2		500213	109472208	XM_575564.2	LOC500213	XP_575564.2	ILMN_1353092	0004070332	S	254	CAGTGTTTGGCTGTAAGCTGCAGAGAAGCGTCCCCTACCATGACCAGCTG	4	+	110115245-110115294	4q33	PREDICTED: Rattus norvegicus similar to T-box transcription factor TBX15 (T-box protein 15) (MmTBx8) (LOC500213), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638191-S	ILMN_59964	LOC497728	XM_579481.1	XM_579481.1		497728	62638191	XM_579481.1	LOC497728	XP_579481.1	ILMN_1363729	0005420035	S	9396	GTCACTCCTGGCTGTCTCAGGGGGAATGAAGCAGAGAGGCCTTCAAAAGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_024137 (LOC497728), mRNA.					
Rattus norvegicus	RefSeq	GI_62644587-S	ILMN_286943	LOC687849	XM_001080339.1	XM_001080339.1		687849	109467797	XM_001080339.1	LOC687849	XP_001080339.1	ILMN_1359514	0005220288	S	1171	GAGTGAGGAGCTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTTCC					PREDICTED: Rattus norvegicus hypothetical protein LOC687849 (LOC687849), mRNA.					
Rattus norvegicus	RefSeq	GI_56799386-S	ILMN_300867	CXCL9	NM_145672.3	NM_145672.3		246759	56799386	NM_145672.3	Cxcl9	NP_663705.1	ILMN_1361632	0002230500	S	1021	GTGGATGTAGCTTAGTGGCAGAATACTTGGTGTTTGCACGGACCTGACCC	14	+	17289514-17289563	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 9 (Cxcl9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence TAS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Interacting selectively with a the CXCR3 chemokine receptor [goid 48248] [evidence TAS]	Scyb9; MGC105312; Mig	Scyb9; MGC105312; Mig
Rattus norvegicus	RefSeq	GI_54400719-S	ILMN_268507	KIF2B	XM_001081262.1	XM_001081262.1		287624	109491664	XM_001081262.1	Kif2b	XP_001081262.1	ILMN_1365874	0003990411	S	2124	AAGCCAAGCTGAGTGACAGCCACGACCTGAGATCAGGAATGAGATCTTGG				10q26	PREDICTED: Rattus norvegicus kinesin family member 2B (Kif2b), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651438-S	ILMN_64012	RGD1564946_PREDICTED	XM_234416.4	XM_234416.4		299199	109478513	XM_234416.4	RGD1564946_predicted	XP_234416.4	ILMN_1363528	0006200435	S	4163	CGCAGACAGGAAAAGGGCCATAGGTTTTGTGGTCGGGCAGACTGACTGGG	6	+	109116900-109116949	6q31	PREDICTED: Rattus norvegicus similar to YLP motif containing protein 1 (Nuclear protein ZAP3) (ZAP113) (predicted) (RGD1564946_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660461-S	ILMN_288975	KLB_PREDICTED	XM_001078178.1	XM_001078178.1		289625	109500602	XM_001078178.1	Klb_predicted	XP_001078178.1	ILMN_1349601	0006660148	S	1791	GAGAACAGAAGTCCTGCCTGTGGTCAGCCTCCAGAAGACACAGAATGCGC				14p11	PREDICTED: Rattus norvegicus klotho beta (predicted) (Klb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027468-S	ILMN_264281	TAS2R13	NM_023998.1	NM_023998.1		78984	13027468	NM_023998.1	Tas2r13	NP_076488.1	ILMN_1349867	0006380286	S	597	CTTCTCTTTGTGGAAACATCTCCAGAAGATGCAGCTCAGTTCCAGAGGAC	4	-	170835058-170835107	4q43	Rattus norvegicus taste receptor, type 2, member 13 (Tas2r13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R8	T2R8
Rattus norvegicus	RefSeq	GI_11024667-S	ILMN_263810	AIPL1	NM_021590.1	NM_021590.1		59110	11024667	NM_021590.1	Aipl1	NP_067601.1	ILMN_1365560	0002630161	S	1072	TTAGACTGGGCTAGGTTGGGTAGAGCTGCTGGTTGAAGCCCTGGACCAAG	10	-	58880144-58880193	10q24	Rattus norvegicus aryl hydrocarbon receptor-interacting protein-like 1 (Aipl1), mRNA.	The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function [goid 1895] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm [goid 7603] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The enzymatic addition of a farnesyl moiety to a protein as a posttranslational modification [goid 18343] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving cGMP [goid 30823] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]	Interacting selectively with a farnesylated protein [goid 1918] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576564-S	ILMN_280733	OLR1645	NM_001000102.1	NM_001000102.1		290056	47576564	NM_001000102.1	Olr1645	NP_001000102.1	ILMN_1371732	0000110452	S	655	GTTTCCTATGCAGTCATTCTTGTGAGTCTGAGGCAACAGATCTCTGACGG	15	-	27969037-27969086	15p14	Rattus norvegicus olfactory receptor 1645 (Olr1645), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1645	Olr1645
Rattus norvegicus	RefSeq	GI_62667508	ILMN_267639	RGD1564599_PREDICTED	XM_001054979.1	XM_001054979.1		293925	109462296	XM_001054979.1	RGD1564599_predicted	XP_001054979.1	ILMN_1650010	0002260347	S	1	CAAGAGGGGTTTCAGTAGAAGGGTCTGCAGTCCTGGCTGAATTCCTGAGA				Xq37	PREDICTED: Rattus norvegicus RGD1564599 (predicted) (RGD1564599_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647304-S	ILMN_60519	RGD1311589_PREDICTED	XM_231844.4	XM_231844.4		312358	109472078	XM_231844.4	RGD1311589_predicted	XP_231844.3	ILMN_1354164	0006660670	S	1173	TCTGTCACCTGTGGGAGTGACGAGGCTGGATGGGTAGTTCAGAGGCAGTC	4	+	82707018-82707067	4q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E130201N16 (predicted) (RGD1311589_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646148-S	ILMN_47818	TGM6_PREDICTED	XM_230601.4	XM_230601.4		296152	109468818	XM_230601.4	Tgm6_predicted	XP_230601.4	ILMN_1361311	0004670035	S	2068	AGAGGGCCTTGATCCAATTCAACATAACCCCCTCCAAGAGCGGCCCAAGG	3	+	117753327-117753376	3q36	PREDICTED: Rattus norvegicus transglutaminase 6 (predicted) (Tgm6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758705-S	ILMN_271038	NRXN2	NM_053846.1	NM_053846.1		116595	16758705	NM_053846.1	Nrxn2	NP_446298.1	ILMN_1370861	0006400164	S	5602	CTGCGCCTGTCAGGCAGGGCACGTGCTCACAGCCCTGGGTTGATTTATTT	1	+	209317257-209317306	1q43	Rattus norvegicus neurexin 2 (Nrxn2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	 [goid 5246] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657219-A	ILMN_287757	FTSJ3	NM_001012014.1	NM_001012014.1		303608	58865605	NM_001012014.1	Ftsj3	NP_001012014.1	ILMN_1376348	0003520601	S	2513	CACAGCGAAAGGAACAGAAGAGAAACCACAGGCGAAAGTGAGCAGAGTGC	10	-	95644477-95644486:95644487-95644526	10q32.1	Rattus norvegicus FtsJ homolog 3 (E. coli) (Ftsj3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605801-S	ILMN_291230	ZFAND2A	NM_001008363.1	NM_001008363.1		360772	56605801	NM_001008363.1	Zfand2a	NP_001008364.1	ILMN_1370665	0000060685	S	2938	AGGATAGTGGGCTGAACCTCACCTAGAGCCTACCACTGAGGAGCTGTGGC	12	+	15672416-15672465	12q11	Rattus norvegicus zinc finger, AN1-type domain 2A (Zfand2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1310991; MGC94876	RGD1310991; MGC94876
Rattus norvegicus	RefSeq	GI_34873028-S	ILMN_67065	LOC313760	XM_233707.2	XM_233707.2		313760	34873028	XM_233707.2	LOC313760	XP_233707.2	ILMN_1350141	0001170725	S	1863	CTGAATCTCTTCAGGGTGAGGGCCTTGGAGTACTGAGGGCATGAGGCCAG					PREDICTED: Rattus norvegicus similar to KIAA1751 protein (LOC313760), mRNA.					
Rattus norvegicus	RefSeq	GI_62638337-S	ILMN_265473	LAMA2_PREDICTED	XM_001062273.1	XM_001062273.1		309368	109460393	XM_001062273.1	Lama2_predicted	XP_001062273.1	ILMN_1373748	0005550577	S	9393	CATCCGATCTCTGAAGCTCACCAAAGGGACAGGCAAGCCGCTGGAGGTTA				1p12	PREDICTED: Rattus norvegicus laminin, alpha 2 (predicted) (Lama2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665240-S	ILMN_62002	GCSH	XM_579628.1	XM_579628.1		171133	62665240	XM_579628.1	Gcsh	XP_579628.1	ILMN_2039266	0006480154	A	929	ACCAGCCACAGTTACAAGGTGGGATGCTACCTACTGGTTATGGGAATTTC				19q12	PREDICTED: Rattus norvegicus glycine cleavage system protein H (aminomethyl carrier) (Gcsh), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A multienzyme complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase [goid 5960] [evidence IEA]; A multienzyme complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase [goid 5960] [evidence IC ]; A multienzyme complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase [goid 5960] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid [goid 6546] [evidence IEA];  [goid 19464] [evidence IMP]	Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein [goid 4047] [evidence IMP]; Interacting selectively with lipoic acid, 1,2-dithiolane-3-pentanoic acid [goid 31405] [evidence IEA]; Interacting selectively with lipoic acid, 1,2-dithiolane-3-pentanoic acid [goid 31405] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718786-S	ILMN_62404	LOC363361	XM_343696.2	XM_343696.2		363361	62718786	XM_343696.2	LOC363361	XP_343697.2	ILMN_1357591	0005270286	S	74	GGAGCTGGGCCACTCTTTGACTTTTGACGCTGGGAGAGAAACATCATCCC					PREDICTED: Rattus norvegicus hypothetical LOC363361 (LOC363361), mRNA.					
Rattus norvegicus	RefSeq	GI_62664345-S	ILMN_62712	LOC498855	XM_574140.1	XM_574140.1		498855	62664345	XM_574140.1	LOC498855	XP_574140.1	ILMN_1356025	0000510170	S	61	GCTGGAAGGCTGTGGTTGAGGAAAGAAAAGTGAACCAAGTAGCCACAGTC				18q11	PREDICTED: Rattus norvegicus similar to vitellogenin-like 1 precursor (LOC498855), mRNA.					
Rattus norvegicus	RefSeq	GI_47576264-S	ILMN_271109	OLR1303	NM_001000796.1	NM_001000796.1		405080	47576264	NM_001000796.1	Olr1303	NP_001000796.1	ILMN_1374348	0007100066	S	407	TGTCCTACAAAGTGTGTTCCTGGATGGTGGCTGCGGTGTATAGTGTAGGC	8	-	42338812-42338861	8q22	Rattus norvegicus olfactory receptor 1303 (Olr1303), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1303	Olr1303
Rattus norvegicus	RefSeq	GI_62718107-S	ILMN_65929	LOC288633	XM_222124.3	XM_222124.3		288633	62718107	XM_222124.3	LOC288633	XP_222124.3	ILMN_1353976	0004590100	S	638	CAAGCCTTCTGTGTAGTTCACCAAGTTTGATGGCGACATCCACATCTACA					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC288633), mRNA.					
Rattus norvegicus	RefSeq	GI_21070929-S	ILMN_264318	PRLHR	NM_139193.1	NM_139193.1		246075	21070929	NM_139193.1	Prlhr	NP_631932.1	ILMN_1349687	0004920671	S	1079	GCCCCGCAAGATCGTGCCTCATGGCCAGAATATGACCGTCAGTGTGGTCA	1	-	267068713-267068762	1q55	Rattus norvegicus prolactin releasing hormone receptor (Prlhr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IPI]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IMP]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]	Uhr-1; Gpr10	Uhr-1; Gpr10
Rattus norvegicus	RefSeq	GI_62638385-S	ILMN_69753	SLC2A12_PREDICTED	XM_217745.4	XM_217745.4		308028	109457656	XM_217745.4	Slc2a12_predicted	XP_217745.3	ILMN_1360029	0006520440	S	1973	AGCAGCTCCCAGAGTGTAAGAAGCTGTGTGGTAGGGGACAGTCACAGCGG	1	-	23323505-23323554	1p12	PREDICTED: Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 12 (predicted) (Slc2a12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661990-S	ILMN_49721	LOC502020	XM_577448.1	XM_577448.1		502020	62661990	XM_577448.1	LOC502020	XP_577448.1	ILMN_1351074	0002850059	S	4775	CCCAGGTCTTGATGCTGATAAACACACTCTACCGCCAGTGCCCACCCCAG				15q11	PREDICTED: Rattus norvegicus similar to mKIAA1016 protein (LOC502020), mRNA.					
Rattus norvegicus	RefSeq	GI_62645846-S	ILMN_269687	ZC3H6_PREDICTED	XM_001081128.1	XM_001081128.1		311415	109470800	XM_001081128.1	Zc3h6_predicted	XP_001081128.1	ILMN_1362671	0007000133	S	3905	GATCCTTTCTGTCAGCACAAAACTGATTAGTGTGTAACGCCAACTGCTAC				3q36	PREDICTED: Rattus norvegicus zinc finger CCCH type containing 6 (predicted) (Zc3h6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865869-A	ILMN_275680	UCHL5	NM_001012149.1	NM_001012149.1		360853	58865869	NM_001012149.1	Uchl5	NP_001012149.1	ILMN_1376954	0003710280	S	1309	GACTCAGTGCACGTTTGGCATAGTACCAGTCTGTCTTTATGCATGGAGTT	13	+	57642564-57642613	13q21	Rattus norvegicus ubiquitin carboxyl-terminal hydrolase L5 (Uchl5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62640678-S	ILMN_49174	LOC497733	XM_579432.1	XM_579432.1		497733	62640678	XM_579432.1	LOC497733	XP_579432.1	ILMN_1362443	0001090440	S	3894	GCACCACCAAGCCCTTTCTAACACTGTGCCCTGGTGGAGAAAGCATTGGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019331 (LOC497733), mRNA.					
Rattus norvegicus	RefSeq	GI_9506894-S	ILMN_69228	MEN1	NM_019208.2	NM_019208.2		29417	75832138	NM_019208.2	Men1	NP_062081.1	ILMN_1363615	0001230338	S	2764	TCTGTGAATACTGAGCCTCGCCCCCTTCCTGACCAAACTGGCCGGAGAAC	1	+	209120635-209120684	1q43	Rattus norvegicus multiple endocrine neoplasia 1 (Men1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence ISS]; A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins [goid 35097] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The process of regulating the proliferation and elimination of cells of the immune system such that the total number of cells of a particular cell type within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1776] [evidence ISS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence ISS]; The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone [goid 2051] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The modification of histones by addition of methyl groups [goid 16571] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones [goid 31062] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32925] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43280] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46329] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organ of an organism [goid 46621] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell division [goid 51781] [evidence ISS]; Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) [goid 51974] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; A reproductive process occurring in the mother that allows an embryo or fetus to develop within it [goid 60135] [evidence ISS]	Interacting selectively with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices [goid 400] [evidence ISS]; Interacting selectively with segment of DNA shaped like a Y. This shape occurs when DNA contains a region of paired double-stranded DNA on one end and a region of unpaired DNA strands on the opposite end [goid 403] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives [goid 18024] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	MGC114329; menin	MGC114329; menin
Rattus norvegicus	RefSeq	GI_62667457	ILMN_63775	SLC9A6_PREDICTED	XM_217630.4	XM_217630.4		302863	109511255	XM_217630.4	Slc9a6_predicted	XP_217630.3	ILMN_1650351	0006980113	S	4237	GTGCATGAGTGAACTGCTCGTGGACCTGTGTTTCTGTTGTTCGTGGAACC	X	+	141200963-141201012	Xq36	PREDICTED: Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 6 (predicted) (Slc9a6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164016-S	ILMN_297268	PDCD10	NM_001009542.1	NM_001009542.1		494345	57164016	NM_001009542.1	Pdcd10	NP_001009542.1	ILMN_1364215	0005340717	S	930	CCAGCCCTCCTGAGGGGTCTAATCCAGGATGTTGAATGGGATTATCGCCA	2	-	166402915-166402964	2q32	Rattus norvegicus programmed cell death 10 (Pdcd10), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Pdcd10	Pdcd10
Rattus norvegicus	RefSeq	GI_34860442-S	ILMN_272992	RGD1310048_PREDICTED	XM_001077585.1	XM_001077585.1		315465	109484379	XM_001077585.1	RGD1310048_predicted	XP_001077585.1	ILMN_1368426	0003290528	S	1830	ACGAAGAGGAGAGTGAGGATGATGACCGAGATGTAGTGACCCGCGCTGCC				8q13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC20983 (predicted) (RGD1310048_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646696-S	ILMN_54177	LOC499983	XM_575337.1	XM_575337.1		499983	62646696	XM_575337.1	LOC499983	XP_575337.1	ILMN_1368334	0000380397	S	490	CTCTATTGTTTGATATTCCTGGAGCCCTGAGGTACTGCCTGCAGCCATGA					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC499983), mRNA.					
Rattus norvegicus	RefSeq	GI_47577766-S	ILMN_269873	OLR1244	NM_001000810.1	NM_001000810.1		405096	47577766	NM_001000810.1	Olr1244	NP_001000810.1	ILMN_1372989	0002970088	S	608	GTGGGATCGATATCATCGTGCCCAGCGTCATCATTTTTACCTCTTATGCC	8	+	40669537-40669586	8q22	Rattus norvegicus olfactory receptor 1244 (Olr1244), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1244	Olr1244
Rattus norvegicus	RefSeq	GI_56605827-S	ILMN_264259	TRAPPC3	NM_001008376.1	NM_001008376.1		362599	56605827	NM_001008376.1	Trappc3	NP_001008377.1	ILMN_1362248	0001410114	S	1051	ACACACTGTAGTCTTGCCAGGCCACGGAAGCCAGTCATGCCGGAAACACC	5	+	145643859-145643908	5q36	Rattus norvegicus trafficking protein particle complex 3 (Trappc3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A large complex present on the cis-Golgi that acts prior to SNARE complex assembly to mediate vesicle docking and fusion [goid 30008] [evidence ISS]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105948	MGC105948
Rattus norvegicus	RefSeq	GI_62658962-S	ILMN_58324	SDSL_PREDICTED	XM_341089.3	XM_341089.3		360816	109496022	XM_341089.3	Sdsl_predicted	XP_341090.3	ILMN_1362394	0002100487	S	816	AGGAGTGTGAAGTCCTCTCTGAGGTGGTAGAAGACCGGGAGGCTGTCAGA	12	+	37306593-37306642	12q16	PREDICTED: Rattus norvegicus serine dehydratase-like (predicted) (Sdsl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55925580-S	ILMN_279445	UGT2B37	NM_001007264.1	NM_001007264.1		29623	55925580	NM_001007264.1	Ugt2b37	NP_001007265.1	ILMN_1358378	0003120079	S	1518	GGATGTGATTGGATTCCTGCTAGCCTGTTTGGCAGTCATTGCAGCCCTTG	14	+	22420959-22421008	14p21	Rattus norvegicus UDP-glucuronosyltransferase 2 family, member 37 (Ugt2b37), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654332-S	ILMN_282829	RGD1564575_PREDICTED	XM_001075395.1	XM_001075395.1		501056	109485453	XM_001075395.1	RGD1564575_predicted	XP_001075395.1	ILMN_1351868	0001340609	S	180	CCTGGGAGGAAGTCGCATCTACCCCGTGGCTGGGGTCACAATTACTACTA					PREDICTED: Rattus norvegicus RGD1564575 (predicted) (RGD1564575_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652969-S	ILMN_50195	RGD1304694	XM_343304.3	XM_343304.3		362974	109481110	XM_343304.3	RGD1304694	XP_343305.3	ILMN_1366171	0005220044	S	1297	CACTCAGCCAATGACAGCGAGGAGTTCTTCCGAGAGGATGACGGAGGAGC	7	-	122971703-122971704:122972576-122972623	7q34	PREDICTED: Rattus norvegicus similar to CG9646-PA (RGD1304694), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34876199-A	ILMN_279186	GLI3	XM_001054276.1	XM_001054276.1		140588	109505859	XM_001054276.1	Gli3	XP_001054276.1	ILMN_1376595	0002060402	S	397	CAGCCTCAGAGTGTGCAGGGTCTCAGCAAAATCAGTGAGGAGCCCTCAAC				17q12.1	PREDICTED: Rattus norvegicus GLI-Kruppel family member GLI3 (Gli3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IEA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IDA]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IEA]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IGI]; Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence IGI]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IGI]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IGI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence TAS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IGI]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IGI]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IMP]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IEA]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IGI]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IMP]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IEA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IGI]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence IMP]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IEA]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IMP]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate [goid 21775] [evidence IEA]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate [goid 21775] [evidence IGI]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21776] [evidence IEA]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21776] [evidence IGI]; The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain [goid 21798] [evidence IMP]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IEA]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IGI]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IGI]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IMP]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IMP]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IMP]; The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts [goid 35295] [evidence IEA]; The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts [goid 35295] [evidence IGI]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus [goid 42307] [evidence IGI]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IGI]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IGI]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IEA]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IMP]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence IMP]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IMP]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IMP]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IEA]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IMP]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IEA]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IGI]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IMP]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence IGI]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IMP]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence IGI]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IGI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742628-S	ILMN_276336	CSDA	XM_001069862.1	XM_001069862.1		83807	109474351	XM_001069862.1	Csda	XP_001069862.1	ILMN_1355756	0002450047	S	1318	ACTAACAACTGCAAAGGGAAGGAGCCCGCACTGTCCATCAAGCTGCGTCC				4q42	PREDICTED: Rattus norvegicus cold shock domain protein A (Csda), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism [goid 46622] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644950-S	ILMN_57202	PTRH1_PREDICTED	XM_342416.3	XM_342416.3		362113	109468034	XM_342416.3	Ptrh1_predicted	XP_342417.3	ILMN_1356712	0004480288	S	355	GCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGG	3	+	11751234-11751283	3p11	PREDICTED: Rattus norvegicus peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) (predicted) (Ptrh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34856748-S	ILMN_284081	EPB4.2_PREDICTED	XM_001076442.1	XM_001076442.1		362202	109470501	XM_001076442.1	Epb4.2_predicted	XP_001076442.1	ILMN_2039600	0004730561	S	2151	ACCTGACCGGCCACAGAAGTGTCCTTGTGGTGGCCCCTGAAGTTTCTGTT				3q35	PREDICTED: Rattus norvegicus erythrocyte protein band 4.2 (predicted) (Epb4.2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341425-S	ILMN_281460	GMFG	NM_181091.2	NM_181091.2		113940	31341425	NM_181091.2	Gmfg	NP_851605.1	ILMN_1362702	0006180021	S	305	ACAGATGATGTACGCGGGAAGTAAAAACAGGCTGGTGCAGATCGCGGAGC	1	+	83556401-83556450	1q21	Rattus norvegicus glia maturation factor, gamma (Gmfg), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Modulates the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19207] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_57114231-S	ILMN_50330	V1RA12	NM_001008914.1	NM_001008914.1		297439	57114231	NM_001008914.1	V1ra12	NP_001008914.1	ILMN_1355655	0005220100	S	876	GTAGTGTACATCTATGCCACAGTCAGCCCTTTTGTGTTTATGAGCACTGA				4q34	Rattus norvegicus vomeronasal 1 receptor, a12 (V1ra12), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658968-S	ILMN_58605	THRAP2_PREDICTED	XM_341090.3	XM_341090.3		360817	109496030	XM_341090.3	Thrap2_predicted	XP_341091.3	ILMN_1353536	0003450170	S	6549	CGGGCTGCAGAAGCTGTGGGAATGGTGCCTGGGGATTGTCCAGATGACAT	12	-	39149382-39149431	12q16	PREDICTED: Rattus norvegicus thyroid hormone receptor associated protein 2 (predicted) (Thrap2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078598-S	ILMN_284393	FAM54B	NM_001013935.1	NM_001013935.1		298549	62078598	NM_001013935.1	Fam54b	NP_001013957.1	ILMN_1354229	0002230358	S	1439	CATCACAGACATACACCAGTGCCCACAGTCACCCTTTCCCTCTAGCTGCA	5	-	153282551-153282600	5q36	Rattus norvegicus family with sequence similarity 54, member B (Fam54b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62660322-S	ILMN_265181	STAP1	NM_001025115.1	NM_001025115.1		305269	68341980	NM_001025115.1	Stap1	NP_001020286.1	ILMN_1369894	0002230014	S	539	ATGCGGATGCACTGAACCCCCTTCCCGAATGTTTTTATGCAGTTTCCCGG	14	-	23748005-23748027:23749698-23749724	14p21	Rattus norvegicus signal transducing adaptor family member 1 (Stap1), mRNA.		The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]	Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Stap-1; MGC109040	Stap-1; MGC109040
Rattus norvegicus	RefSeq	GI_62646511-S	ILMN_292954	LOC682021	XM_001059436.1	XM_001059436.1		682021	109471521	XM_001059436.1	LOC682021	XP_001059436.1	ILMN_1356896	0005130528	S	63	AGGCTTCCTCACAGCCAGTGCAGAGCGGCCAGCATTACAAGGAGTCATGG					PREDICTED: Rattus norvegicus similar to Protein C20orf151 (LOC682021), mRNA.					
Rattus norvegicus	RefSeq	GI_62646475-S	ILMN_64617	LOC502695	XM_578194.1	XM_578194.1		502695	62646475	XM_578194.1	LOC502695	XP_578194.1	ILMN_1363386	0003520504	S	1029	CAAGGCAGCAGTACACTCTTGCAGCCACCATGCCCAAGGCTGTCACTTGG					PREDICTED: Rattus norvegicus LOC502695 (LOC502695), mRNA.					
Rattus norvegicus	RefSeq	GI_62650583-S	ILMN_66963	RGD1560812_PREDICTED	XM_576015.2	XM_576015.2		500640	109478121	XM_576015.2	RGD1560812_predicted	XP_576015.2	ILMN_1360470	0000360273	S	1012	AGGGACACGTGCATTTTCTCCCTCTTGGACTCTACCTCACCGGTCTGGAA	6	+	50624030-50624079	6q16	PREDICTED: Rattus norvegicus RGD1560812 (predicted) (RGD1560812_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664712-S	ILMN_57163	FBXO15_PREDICTED	XM_341633.3	XM_341633.3		361354	109506860	XM_341633.3	Fbxo15_predicted	XP_341634.3	ILMN_1355981	0004670372	S	1123	GTGGATGTGACCCTTCTGGATGAGCACAGGAAGCCCTTTTGGTGTGTGAG	18	+	81599454-81599503	18q12.3	PREDICTED: Rattus norvegicus F-box protein 15 (predicted) (Fbxo15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090306-S	ILMN_291289	NUTF2	NM_001007629.1	NM_001007629.1		291981	56090306	NM_001007629.1	Nutf2	NP_001007630.1	ILMN_1354892	0005130021	S	1797	CTAAGCTGCTGTGTATTGGGGGAAGTAGGGGTGGGAGAGGTAGATGCCAG	19	+	35718706-35718755	19q12	Rattus norvegicus nuclear transport factor 2 (Nutf2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	MGC72930	MGC72930
Rattus norvegicus	RefSeq	GI_62656666-S	ILMN_62338	UNC45B_PREDICTED	XM_220771.4	XM_220771.4		303373	109488670	XM_220771.4	Unc45b_predicted	XP_220771.3	ILMN_1368131	0006760594	S	3432	GCAAGACGGATACGGTGACTATCAATAAGAGCAACTCAAAGTCCCCCGAG	10	+	71156381-71156430	10q26	PREDICTED: Rattus norvegicus unc-45 homolog B (C. elegans) (predicted) (Unc45b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27674556-S	ILMN_62338	UNC45B_PREDICTED	XM_220771.4	XM_220771.4		303373	109488670	XM_220771.4	Unc45b_predicted	XP_220771.3	ILMN_2039906	0004810681	S	2814	GAGTGTCTTATCAAGTGCATGGACTACGGCTTCATCAAGCCGGTGTCCTA	10	+	71155763-71155812	10q26	PREDICTED: Rattus norvegicus unc-45 homolog B (C. elegans) (predicted) (Unc45b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648280-S	ILMN_61165	LOC500351	XM_575704.1	XM_575704.1		500351	62648280	XM_575704.1	LOC500351	XP_575704.1	ILMN_1364478	0005690035	S	0	GAGACTCCTCTTCGTCGTTATGTCTGGACGAGGGAAAGGCGGCAAAGGTC				4q43	PREDICTED: Rattus norvegicus similar to germinal histone H4 gene (LOC500351), mRNA.					
Rattus norvegicus	RefSeq	GI_47577682-S	ILMN_295315	OLR569	NM_001000664.1	NM_001000664.1		404866	47577682	NM_001000664.1	Olr569	NP_001000664.1	ILMN_1366373	0001940332	S	711	CTCCACCTGCACATCTCACTTGACCGCAGTTGCTATTTTTCAAGGAACTC	3	+	71204466-71204515	3q24	Rattus norvegicus olfactory receptor 569 (Olr569), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr569	Olr569
Rattus norvegicus	RefSeq	GI_62654612	ILMN_293517	EFHB_PREDICTED	XM_001053955.1	XM_001053955.1		301168	109514114	XM_001053955.1	Efhb_predicted	XP_001053955.1	ILMN_1650990	0004070064	S	2351	CGCCTTGCTGCACCCCTCCATCTTCTCGCAGAAAGGTGTATTCGAGAGAG				9q11	PREDICTED: Rattus norvegicus EF hand domain family, member B (predicted) (Efhb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657719-S	ILMN_301659	KRTAP14_PREDICTED	XM_344003.2	XM_344003.2		363739	62657719	XM_344003.2	Krtap14_predicted	XP_344004.2	ILMN_1349922	0000580358	S	358	GTGAGCTGTGGAAGCAGTGGCTTCAGATCCCTGAATTGTGGAGTCTATGA	11	-	28609010-28609059	11q11	PREDICTED: Rattus norvegicus keratin associated protein 14 (predicted) (Krtap14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242294-S	ILMN_300126	HMOX2	NM_024387.1	NM_024387.1		79239	13242294	NM_024387.1	Hmox2	NP_077363.1	ILMN_1373053	0005550279	S	1466	GAGCTGCCCACACCCAGGTTTTGTGGAAAACGGTCATGCCAGCTGATGGG	10	-	10914457-10914506	10q12	Rattus norvegicus heme oxygenase (decycling) 2 (Hmox2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS];  [goid 6788] [evidence TAS];  [goid 6788] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence TAS]; Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence IDA]; Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence IEA]; Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O [goid 4392] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ho-2	Ho-2
Rattus norvegicus	RefSeq	GI_62649498-S	ILMN_54716	LOC500535	XM_575896.1	XM_575896.1		500535	62649498	XM_575896.1	LOC500535	XP_575896.1	ILMN_1370894	0000360465	S	406	CCCAGTGGGCCTTAAAATAAAGCCTTTGCAGCCCCCTGTGGCTATTTAAA					PREDICTED: Rattus norvegicus similar to CG18661-PA (LOC500535), mRNA.					
Rattus norvegicus	RefSeq	GI_62657341-S	ILMN_58688	RGD1310043_PREDICTED	XM_221115.4	XM_221115.4		287827	109489386	XM_221115.4	RGD1310043_predicted	XP_221115.4	ILMN_1350566	0005080451	S	536	CTCCCGGTCATCATCAACTGCCTGTCCAGCCCTAACGAGGAGACGGTGTT	10	+	105573012-105573061	10q32.3	PREDICTED: Rattus norvegicus similar to Hypothetical protein A630084C13 (predicted) (RGD1310043_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717866-S	ILMN_52703	LOC503298	XM_578834.1	XM_578834.1		503298	62717866	XM_578834.1	LOC503298	XP_578834.1	ILMN_1363241	0004200594	S	315	ACCCAGCACATCTTCAAGCTGGAGCAGCAAGGCAGCAGTGTGCACATTCT					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC503298), mRNA.					
Rattus norvegicus	RefSeq	GI_62658982-S	ILMN_59306	RGD1305986_PREDICTED	XM_341092.3	XM_341092.3		360819	109496050	XM_341092.3	RGD1305986_predicted	XP_341093.3	ILMN_1355572	0001690195	S	2947	GAGCATCGGGTGTGCTTTCCTGCCTGAATCTGATTGGCAGATCGTGTGCC	12	+	40689733-40689782	12q16	PREDICTED: Rattus norvegicus similar to FLJ00052 protein (predicted) (RGD1305986_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557002-S	ILMN_286018	GNA13	NM_001013119.1	NM_001013119.1		303634	61557002	NM_001013119.1	Gna13	NP_001013137.1	ILMN_1371759	0006350152	S	765	GCTTATGGAGGACCGCCTGACCAACCGCCTCACAGAGTCCCTGAACATTT	10	-	98933327-98933376	10q32.1	Rattus norvegicus guanine nucleotide binding protein, alpha 13 (Gna13), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IMP]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; The series of molecular signals that results in the upregulation of phospholipase D activity in response to the initial signal [goid 31584] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IMP]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IMP]; Interacting selectively with a D5 dopamine receptor [goid 31752] [evidence IPI]	Galpha13	Galpha13
Rattus norvegicus	RefSeq	GI_16758729-S	ILMN_292241	SLC28A1	NM_053863.1	NM_053863.1		116642	16758729	NM_053863.1	Slc28a1	NP_446315.1	ILMN_1373981	0002370133	S	2137	ATCCAGCCCAGAGAGGCCGTGGGACTCGTCACTACCTCCATCCCACAATT	1	+	137365719-137365768	1q31	Rattus norvegicus solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 (Slc28a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of pyrimidines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells [goid 15855] [evidence IDA]	Interacting selectively with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose [goid 1882] [evidence IEA]; Catalysis of the transfer of pyrimidines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other [goid 5350] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + Na+(out) = nucleoside(in) + Na+(in) [goid 5415] [evidence IEA]	Cnt1	Cnt1
Rattus norvegicus	RefSeq	GI_62638858-S	ILMN_70354	RGD1566222_PREDICTED	XM_574352.2	XM_574352.2		499071	109457949	XM_574352.2	RGD1566222_predicted	XP_574352.1	ILMN_1357237	0000670037	S	1090	GCTACTCATTGTGGCTCCCGAAAAGCTGGCTGAGGTGGGAGAGTTCGATC	1	-	67518919-67518968	1q12	PREDICTED: Rattus norvegicus similar to HSU79303 protein (predicted) (RGD1566222_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408333-S	ILMN_297968	NOLC1	NM_022869.1	NM_022869.1		64896	12408333	NM_022869.1	Nolc1	NP_074060.1	ILMN_1354185	0000110717	S	3266	GGGGGGCTGGGAGGCATATCTGGGTGATAGTGGCGCTTACCTACCATTCA	1	+	251307783-251307832	1q54	Rattus norvegicus nucleolar and coiled-body phosphoprotein 1 (Nolc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly the nucleolus [goid 7000] [evidence ISS]; Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus [goid 42306] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Nopp140	Nopp140
Rattus norvegicus	RefSeq	GI_62642583	ILMN_49584	LOC499386	XM_579957.1	XM_579957.1		499386	62642583	XM_579957.1	LOC499386	XP_579957.1	ILMN_1650525	0003450402	S	81	CGGCATGAGCAGCCCCTTAAAAGACAAGGCTTGGATTGGCAGTAGCAGAC					PREDICTED: Rattus norvegicus LOC499386 (LOC499386), mRNA.					
Rattus norvegicus	RefSeq	GI_16758399-S	ILMN_57085	KCNJ13	NM_053608.1	NM_053608.1		94341	16758399	NM_053608.1	Kcnj13	NP_446060.1	ILMN_1368321	0005390138	S	1829	GAGGTAGCATATACCTTTAGTTCCAGCTAGGAGGCCGAGGCAGTGGGAGC				9q35	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 13 (Kcnj13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	 [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir7.1	Kir7.1
Rattus norvegicus	RefSeq	GI_62666103	ILMN_58435	RGD1565115_PREDICTED	XM_574772.2	XM_574772.2		499449	109509531	XM_574772.2	RGD1565115_predicted	XP_574772.2	ILMN_1651104	0006380538	S	492	TGCAACACCTGAGCTGCCTCTCTCACAAGAAGAATATGAGGCTCTGCTGG	20	+	38001283-38001332	20q11	PREDICTED: Rattus norvegicus RGD1565115 (predicted) (RGD1565115_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650465-S	ILMN_275540	RGD1560726_PREDICTED	XM_001067686.1	XM_001067686.1		298873	109479061	XM_001067686.1	RGD1560726_predicted	XP_001067686.1	ILMN_1364501	0005860725	S	1101	GCTGCTGGTCATCCCAGGAAACTTCAGCACCTTTGTGAACCTCTTGAGCT				6q14	PREDICTED: Rattus norvegicus similar to hypothetical protein 9030221C07 (predicted) (RGD1560726_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664090-S	ILMN_60023	LOC498824	XM_574105.1	XM_574105.1		498824	62664090	XM_574105.1	LOC498824	XP_574105.1	ILMN_1351550	0004230603	S	1407	GACTGCTCAAATACAAGGAAGTGGCCCAATGAACATGGTTGTGGGAGGGG					PREDICTED: Rattus norvegicus similar to WAC (LOC498824), mRNA.					
Rattus norvegicus	RefSeq	GI_62654695-S	ILMN_47837	RGD1559787_PREDICTED	XM_576514.2	XM_576514.2		501099	109485710	XM_576514.2	RGD1559787_predicted	XP_576514.1	ILMN_1362760	0006620008	S	3882	TTCTATGTGCAGCAACCCTTGGTGTTTCCCTTCCTAAGTGGCTCTGGGGG	9	+	9797403-9797452	9q12	PREDICTED: Rattus norvegicus similar to serum response factor (predicted) (RGD1559787_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654578-S	ILMN_64636	LOC367198	XM_346005.3	XM_346005.3		367198	109484151	XM_346005.3	LOC367198	XP_346006.3	ILMN_1368474	0005900047	S	1909	GCGGTCATGTCAATGGTTGGCTATATCCTGGGGCTTGGAGACCGTCATGG	8|NW_047809.1	-	110224-110273		PREDICTED: Rattus norvegicus similar to Serine/threonine-protein kinase ATR (Ataxia telangiectasia and Rad3-related protein) (LOC367198), mRNA.			Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11120695-S	ILMN_289404	CSAD	NM_021750.1	NM_021750.1		60356	11120695	NM_021750.1	Csad	NP_068518.1	ILMN_1353637	0003440035	S	2237	AAGGCGGTGAGTGGAACTGTGCCAAAGGTCAGCAGTTTTCCCTGGAGGAG	7	-	140917928-140917977	7q36	Rattus norvegicus cysteine sulfinic acid decarboxylase (Csad), mRNA.		The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]; The chemical reactions and pathways resulting in the formation of taurine (2-aminoethanesulfonic acid), a sulphur-containing amino acid derivative important in the metabolism of fats [goid 42412] [evidence TAS]	Catalysis of the reaction: 3-sulfino-L-alanine = hypotaurine + CO2 [goid 4782] [evidence IDA]; Catalysis of the reaction: 3-sulfino-L-alanine = hypotaurine + CO2 [goid 4782] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576586-S	ILMN_263146	OLR1660	NM_001000106.1	NM_001000106.1		291172	47576586	NM_001000106.1	Olr1660	NP_001000106.1	ILMN_1355608	0004670292	S	469	CTTTGTCCCTTGACTTTGAAGTTGCCAAGGTGTGGGCACCGGGAAGTGGA	17	+	51250105-51250154	17q11	Rattus norvegicus olfactory receptor 1660 (Olr1660), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1660; ratchr17-51252478-51253416_ORF	Olr1660; ratchr17-51252478-51253416_ORF
Rattus norvegicus	RefSeq	GI_6978836-S	ILMN_272021	FGF10	NM_012951.1	NM_012951.1		25443	6978836	NM_012951.1	Fgf10	NP_037083.1	ILMN_1370793	0000870019	S	296	TTGAAAAGAACGGCAAGGTCAGCGGGACCAAGAAGGAAAACTGTCCGTAC	2	+	50867094-50867143	2q15-q16	Rattus norvegicus fibroblast growth factor 10 (Fgf10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence IEA]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence TAS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30177] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30177] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence IEA]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence ISS]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; Any process that activates or increases the rate or extent of urothelial cell proliferation [goid 50677] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]	Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence TAS]; Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence ISS]; Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence ISS]; Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence ISS]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence IEA]	FGF-10	FGF-10
Rattus norvegicus	RefSeq	GI_47576962-S	ILMN_299736	OLR791	NM_001000580.1	NM_001000580.1		366152	47576962	NM_001000580.1	Olr791	NP_001000580.1	ILMN_1356131	0001410239	S	593	TGGTCACAGCCAACAGTGGGTTCATCTCTGTGGGCTCCTTCTTCATACTG	3	-	97867744-97867793	3q34	Rattus norvegicus olfactory receptor 791 (Olr791), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr791; ratchr3-97764814-97763876_ORF	Olr791; ratchr3-97764814-97763876_ORF
Rattus norvegicus	RefSeq	GI_47576622-S	ILMN_287476	OLR858	NM_001000584.1	NM_001000584.1		366457	47576622	NM_001000584.1	Olr858	NP_001000584.1	ILMN_1368264	0006550215	S	662	TCTTCACTTCCATCCTGAAGATCCGTTCAGCACAGGGGCGACTGAAAGCC	5	+	139186584-139186633	5q36	Rattus norvegicus olfactory receptor 858 (Olr858), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr858	Olr858
Rattus norvegicus	RefSeq	GI_62649700-S	ILMN_65770	LOC500550	XM_575912.1	XM_575912.1		500550	62649700	XM_575912.1	LOC500550	XP_575912.1	ILMN_1372756	0002340672	S	84	CCGATTCACTCGCTGGGGAGACTTATGGGCCGAAGCCGTGTAAATGCGTT				5q36	PREDICTED: Rattus norvegicus similar to ornithine decarboxylase-like protein (LOC500550), mRNA.					
Rattus norvegicus	RefSeq	GI_62645543-S	ILMN_276486	RGD1305045_PREDICTED	XM_001074486.1	XM_001074486.1		296050	109470413	XM_001074486.1	RGD1305045_predicted	XP_001074486.1	ILMN_1354954	0006130735	S	765	AAACAGGCAAAAGTGGAGCTGGCAAAAGGAGGTAGTCAGGCCCACAGCTG				3q34	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1305045_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981343-S	ILMN_277841	PDC	NM_012872.1	NM_012872.1		25343	6981343	NM_012872.1	Pdc	NP_037004.1	ILMN_1356209	0004480279	S	783	CCTAGGGCAGACCAACACGGAAGATGAAGATATCGAGTAAGCACGCACGG	13	+	64635542-64635581:64635582-64635591	13q21	Rattus norvegicus phosducin (Pdc), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]		Rpr1; 33DPTP	Rpr1; 33DPTP
Rattus norvegicus	RefSeq	GI_51854254-S	ILMN_289730	ANO7	NM_001004071.1	NM_001004071.1		367318	51854254	NM_001004071.1	Ano7	NP_001004071.1	ILMN_1357491	0004780008	S	2647	GGCACTGGCTGATAATGAGGCTCTCCTTGGAGCAACAGGAGTGAAGGGTG	9	+	92682739-92682757:92682946-92682976	9q36	Rattus norvegicus anoctamin 7 (Ano7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62643294-S	ILMN_63808	EIF5A2_PREDICTED	XM_226974.4	XM_226974.4		310261	109464693	XM_226974.4	Eif5a2_predicted	XP_226974.1	ILMN_1373507	0003140301	S	1099	CGAAGGGAAGTACAATGCAGGTGAAGATGTGCAGGTGTCCGTCATGTGCG	2	+	116155260-116155293:116155845-116155860	2q24	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 5A2 (predicted) (Eif5a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648749-S	ILMN_61878	LOC500426	XM_575788.1	XM_575788.1		500426	62648749	XM_575788.1	LOC500426	XP_575788.1	ILMN_1350111	0006940577	S	35	CTCCGGTGACAGCAGATGCTGGCCAAGATGTGGAGAAAGAGTAACACTCC					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC500426), mRNA.					
Rattus norvegicus	RefSeq	GI_27669186-S	ILMN_63933	RARS_PREDICTED	XM_213276.4	XM_213276.4		287191	109487971	XM_213276.4	Rars_predicted	XP_213276.3	ILMN_2039248	0004570431	S	1681	CCATTGCACGCCTGGCCCAATATCGATGAGGAAATGCTGCAGAGAGCAGC	10	-	20722092-20722141	10q12	PREDICTED: Rattus norvegicus arginyl-tRNA synthetase (predicted) (Rars_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408297-S	ILMN_262374	DPP6	NM_022850.1	NM_022850.1		29272	12408297	NM_022850.1	Dpp6	NP_074041.1	ILMN_1359021	0003130451	S	2460	GGACTCGACAACAGAGCGTATGAGATGACCAAGCTGGCACACAGAGTGTC	4	-	2856156-2856183:2856805-2856826	4q11	Rattus norvegicus dipeptidylpeptidase 6 (Dpp6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646719-S	ILMN_265965	LOC689135	XM_001069691.1	XM_001069691.1		689135	109471656	XM_001069691.1	LOC689135	XP_001069691.1	ILMN_1364857	0004850750	S	1121	CACACAGACTTCACCTCAACAGGTTCAGCGTCAGCGGAACTGCAACCACC	4	+	20967389-20967438	4q12	PREDICTED: Rattus norvegicus similar to Metabotropic glutamate receptor 3 precursor (mGluR3) (LOC689135), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_6978666-S	ILMN_272177	CMA1	NM_013092.1	NM_013092.1		25627	6978666	NM_013092.1	Cma1	NP_037224.1	ILMN_1365425	0002970167	S	781	CTGGATCTCGGGCCAGTGTGTGAGGAAATCTGGAGCTGGAATCGTGCAGG				15p13	Rattus norvegicus chymase 1, mast cell (Cma1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IMP]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IMP]	MCP3P; Mcpt5	MCP3P; Mcpt5
Rattus norvegicus	RefSeq	GI_62661181-I	ILMN_65356	SPETEX-2C	XM_573726.1	XM_573726.1		364255	62661181	XM_573726.1	Spetex-2C	XP_573726.1	ILMN_1375875	0002510139	S	632	CTGGGTCACAGGAGAGGCTGCAGAAAAGGGCCCCATAGAAATTGGTTGCT				15p16	PREDICTED: Rattus norvegicus Spetex-2C protein (Spetex-2C), mRNA.					
Rattus norvegicus	RefSeq	GI_62661181-A	ILMN_65356	SPETEX-2C	XM_573726.1	XM_573726.1		364255	62661181	XM_573726.1	Spetex-2C	XP_573726.1	ILMN_1376729	0004070025	S	1132	TGAAGAAGAATGTAAGGATTTTGATGAATGAGAACAGAAAACTGGTGGAG				15p16	PREDICTED: Rattus norvegicus Spetex-2C protein (Spetex-2C), mRNA.					
Rattus norvegicus	RefSeq	GI_62642051	ILMN_286483	FAM122A	NM_001014029.1	NM_001014029.1		309420	62078788	NM_001014029.1	Fam122a	NP_001014051.1	ILMN_1650268	0005360484	S	373	CGCTCGTGGACCGTCTCTCGGTTGATCAGGTCCATGCCCTCCTCTTGTTT	1	-	227892845-227892894	1q51	Rattus norvegicus family with sequence similarity 122A (Fam122a), mRNA.					
Rattus norvegicus	RefSeq	GI_61556859-S	ILMN_272636	MRPL46	NM_001013068.1	NM_001013068.1		293054	61556859	NM_001013068.1	Mrpl46	NP_001013086.1	ILMN_1362149	0005220576	S	835	GTCAGGCGGTTTCTCCTGGACCTCTGATGGACTCGGCTGCCTGTGAATGT	1	-	134499048-134499071:134499072-134499097	1q31	Rattus norvegicus mitochondrial ribosomal protein L46 (Mrpl46), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_18266713-S	ILMN_272383	TRIM63	NM_080903.1	NM_080903.1		140939	18266713	NM_080903.1	Trim63	NP_543179.1	ILMN_1372830	0002260184	S	1555	TCCTTGGCGGGAGGGTTGGGTCTCACTCAAAGGCCTAGAAAGGGGCAATG	5	+	153073620-153073669	5q36	Rattus norvegicus tripartite motif-containing 63 (Trim63), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IDA]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEP]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively [goid 31432] [evidence ISS]; Interacting selectively with titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively [goid 31432] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Murf; Rnf28; Murf1	Murf; Rnf28; Murf1
Rattus norvegicus	RefSeq	GI_57527938-S	ILMN_290015	CDKN2C	NM_131902.3	NM_131902.3		54238	57527938	NM_131902.3	Cdkn2c	NP_571977.1	ILMN_1371083	0002470239	S	900	TGAAGCACACAGCCTGCAATGTGGGGCATCGGAACCATAAGGGGGACACC	5	-	131013007-131013056	5q35	Rattus norvegicus cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) (Cdkn2c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence IEA]; Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence ISS]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system [goid 48709] [evidence IEP]	Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence TAS]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	p18	p18
Rattus norvegicus	RefSeq	GI_61097938-S	ILMN_287608	SHC1	NM_053517.1	NM_053517.1		85385	61097938	NM_053517.1	Shc1	NP_445969.1	ILMN_1356122	0000460551	S	1689	AATGTGCAGAGTGGTCCCTTGTCTGGGCCTTGCCTGTGCCAACCTGATGC	2	+	181626725-181626774	2q34	Rattus norvegicus src homology 2 domain-containing transforming protein C1 (Shc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IMP]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IMP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence IPI]; Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]	P66shc	P66shc
Rattus norvegicus	RefSeq	GI_62661141-S	ILMN_63236	LOC498458	XM_579825.1	XM_579825.1		498458	62661141	XM_579825.1	LOC498458	XP_579825.1	ILMN_1369475	0002470215	S	510	TGCATTCCCGGTCACTTTTTGAGGTTTTTCCGGGAGCTCTGGCAGCTTCC					PREDICTED: Rattus norvegicus LOC498458 (LOC498458), mRNA.					
Rattus norvegicus	RefSeq	GI_62659140-S	ILMN_48566	LOC316653	XM_237451.3	XM_237451.3		316653	62659140	XM_237451.3	LOC316653	XP_237451.3	ILMN_1375220	0001410068	S	1120	CCTGGGATAAGGGCTCGGATATGCCTCACAAGCAACGTAAAAACCCACAG					PREDICTED: Rattus norvegicus similar to hypothetical protein C230069C04 (LOC316653), mRNA.					
Rattus norvegicus	RefSeq	GI_62656189-S	ILMN_294419	MAP2K3	XM_239239.3	XM_239239.3		303200	62656189	XM_239239.3	Map2k3	XP_239239.2	ILMN_1373506	0006290403	S	1998	CAGTCTGCAGGATGGCTCAAGCTCTTTGCTCAAGACCACACGGGAGCTCT	10	+	47096381-47096430	10q22	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase 3 (Map2k3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cytokines [goid 42035] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758521-S	ILMN_275406	BIK	NM_053704.1	NM_053704.1		114496	16758521	NM_053704.1	Bik	NP_446156.1	ILMN_1365163	0004850400	S	863	CGGCCACACCCCTGTCTGTGAAGCCTTGAGGCACGGAATCTACTGGACTA	7	-	121377047-121377096	7q34	Rattus norvegicus BCL2-interacting killer (apoptosis-inducing) (Bik), mRNA.	The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Biklk; Blk	Biklk; Blk
Rattus norvegicus	RefSeq	GI_61556875-S	ILMN_276003	FSIP1	NM_001013078.1	NM_001013078.1		296074	61556875	NM_001013078.1	Fsip1	NP_001013096.1	ILMN_1367262	0004610204	S	1306	GGGGAGAAGATACTCCGGGACAACAAAGAGCAAAGGGACCGTGAGTCTCG	3	-	104646419-104646468	3q35	Rattus norvegicus fibrous sheath interacting protein 1 (Fsip1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13540706-S	ILMN_296413	PFN2	NM_030873.1	NM_030873.1		81531	13540706	NM_030873.1	Pfn2	NP_110500.1	ILMN_1370459	0000610731	S	1339	GTCAATAGCACGTGATGAGTGCAGCTGTGGAGAGAAAGGCACTTCCTCCC	2	-	147067379-147067428	2q31	Rattus norvegicus profilin 2 (Pfn2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IDA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652390-S	ILMN_275225	RGD1309483_PREDICTED	XM_001060056.1	XM_001060056.1		366915	109482128	XM_001060056.1	RGD1309483_predicted	XP_001060056.1	ILMN_1349887	0003120411	S	786	CCACCCGGAACCTGGCTGTGGGGTCCTGCTTTCCTTTGGCAATAATGAGA				7q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC39715 (predicted) (RGD1309483_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657422-S	ILMN_62962	LOC501744	XM_577145.1	XM_577145.1		501744	62657422	XM_577145.1	LOC501744	XP_577145.1	ILMN_1372199	0002760390	S	574	ACTGTGTAGAAGGAGACTGCCCCTTTGTCCCTCTAGGCTCTGGCGAGGGT				10q32.2	PREDICTED: Rattus norvegicus similar to Immunoglobulin superfamily, member 7 (LOC501744), mRNA.					
Rattus norvegicus	RefSeq	GI_25742756-S	ILMN_265988	GSS	NM_012962.1	NM_012962.1		25458	25742756	NM_012962.1	Gss	NP_037094.1	ILMN_1348976	0006040086	S	1717	TGAGGCAAAGGCCCACAAACCCCACACATCTTCATTGCCCTCTCGCCAGC	3	-	146057632-146057681	3q42	Rattus norvegicus glutathione synthetase (Gss), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence IDA]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione [goid 4363] [evidence NAS]; Catalysis of the reaction: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione [goid 4363] [evidence ISS]; Catalysis of the reaction: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione [goid 4363] [evidence IDA]; Catalysis of the reaction: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione [goid 4363] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IDA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62646633-S	ILMN_51245	LOC497782	XM_579621.1	XM_579621.1		497782	62646633	XM_579621.1	LOC497782	XP_579621.1	ILMN_1355930	0002350746	S	4431	TGAGTACCTGAGTCCAGATCCCTAGCACCTATGTAAGCAGAAAGGTGTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133401 (LOC497782), mRNA.					
Rattus norvegicus	RefSeq	GI_19424217-S	ILMN_285068	HDGFRP2	NM_133548.1	NM_133548.1		171073	19424217	NM_133548.1	Hdgfrp2	NP_598232.1	ILMN_1366167	0002850041	S	1807	CGCATCCCAGAAGGGAGAGAACACAGAAGATGGAGCACAGGAAGACGGGC	Un|NW_047865.1	-	994146-994195		Rattus norvegicus hepatoma-derived growth factor, related protein 2 (Hdgfrp2), mRNA.				MGC105333	MGC105333
Rattus norvegicus	RefSeq	GI_62654608-S	ILMN_66424	LOC501086	XM_576498.1	XM_576498.1		501086	62654608	XM_576498.1	LOC501086	XP_576498.1	ILMN_1375047	0003710309	S	2317	GAGCAGCCTGTGGTGTGAGCAGGAGCCTGGGGTATTTAGCATGAGCTAGA				9q11	PREDICTED: Rattus norvegicus similar to Sulfotransferase K2 (rSULT1C2A) (LOC501086), mRNA.					
Rattus norvegicus	RefSeq	GI_39930605-S	ILMN_286347	OCM	NM_012995.1	NM_012995.1		25503	39930605	NM_012995.1	Ocm	NP_037127.1	ILMN_1361415	0000050373	S	553	GCAATGGTTTGTGATGGTGGGTAGGTCCTGATAACCTCTGTAAGCACCCC	12	+	10925490-10925539	12p11	Rattus norvegicus oncomodulin (Ocm), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	oncmodulin; OM	oncmodulin; OM
Rattus norvegicus	RefSeq	GI_47575998-S	ILMN_283959	OLR1453	NM_001000772.1	NM_001000772.1		405047	47575998	NM_001000772.1	Olr1453	NP_001000772.1	ILMN_1369392	0003440487	S	878	GAAACAAGGAGGTCAAGGGGGCCTTGAGAAAGTGGCTGAAGACAGTGTGA	10	+	44975469-44975518	10q22	Rattus norvegicus olfactory receptor 1453 (Olr1453), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1453	Olr1453
Rattus norvegicus	RefSeq	GI_62662373-S	ILMN_268526	AP1M1	XM_001068216.1	XM_001068216.1		306332	109503918	XM_001068216.1	Ap1m1	XP_001068216.1	ILMN_1365225	0001410136	S	2072	CAGCACAGGCCAGTCTCACTGTACAAGACCTCGTCGTCCTCCACCCATGT				16p14	PREDICTED: Rattus norvegicus adaptor-related protein complex AP-1, mu subunit 1 (Ap1m1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577932-S	ILMN_282330	OLR1132	NM_001000986.1	NM_001000986.1		405344	47577932	NM_001000986.1	Olr1132	NP_001000986.1	ILMN_1349247	0004010164	S	522	CCCCCACTTTTTCTGTGAGCTTGCCCAGATTATCAAGCTAGCCTGTTCTG	8	-	17145479-17145528	8q13	Rattus norvegicus olfactory receptor 1132 (Olr1132), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1132	Olr1132
Rattus norvegicus	RefSeq	GI_6978722-S	ILMN_293757	CTSL1	NM_013156.1	NM_013156.1		25697	6978722	NM_013156.1	Ctsl1	NP_037288.1	ILMN_1351117	0001090017	S	881	CTGTAGCAGCAAGGACCTCGACCATGGGGTTCTGGTGGTTGGCTATGGTT	17	+	6292719-6292768	17p14	Rattus norvegicus cathepsin L1 (Ctsl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with a kininogen, any of a group of plasma proteins that are kinin precursors [goid 30984] [evidence IPI]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]	CATHL	CATHL
Rattus norvegicus	RefSeq	GI_6981623-S	ILMN_276064	SYT2	NM_012665.1	NM_012665.1		24805	6981623	NM_012665.1	Syt2	NP_036797.1	ILMN_1357496	0000580398	S	2604	GCCAGGAAACACAGCGCATTCATTTCAGATGGGTGGTGGAGAAAATGTGC				13q13	Rattus norvegicus synaptotagmin II (Syt2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding an endocytic vesicle [goid 30666] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence TAS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence ISS]	RATSYNII; SYNII	RATSYNII; SYNII
Rattus norvegicus	RefSeq	GI_62649156-S	ILMN_60343	LOC497804	XM_579529.1	XM_579529.1		497804	62649156	XM_579529.1	LOC497804	XP_579529.1	ILMN_1374789	0004560465	S	8070	AAATAACGGAGCCTTGGACACTGACGGGTCTCTAGAACTCTCAGCTAGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031743 (LOC497804), mRNA.					
Rattus norvegicus	RefSeq	GI_62641485-A	ILMN_283699	GSTP1	NM_012577.1	NM_012577.1		24426	25453419	NM_012577.1	Gstp1	NP_036709.1	ILMN_1376479	0002340711	S	5	CACCGTACACCATTGTGTACTTCCCAGTTCGAGGGCGCTGTGAGGCCACG	1	-	206629342-206629360:206629551-206629581	1q42	Rattus norvegicus glutathione-S-transferase, pi 1 (Gstp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IDA]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IDA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence ISS]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]	Gstp2; Gst3; GST-P; Gstp	Gstp2; Gst3; GST-P; Gstp
Rattus norvegicus	RefSeq	GI_62647105-S	ILMN_273920	RGD1564286_PREDICTED	XM_001070939.1	XM_001070939.1		500092	109473395	XM_001070939.1	RGD1564286_predicted	XP_001070939.1	ILMN_1360303	0004120537	S	1726	GCAGGCTTCAGGGCTGTACCAATGGCCCTCTCTGGCTCCAATACTGCTAC				4q22	PREDICTED: Rattus norvegicus similar to dopamine-beta-hydroxylase (predicted) (RGD1564286_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657493-S	ILMN_68225	CD7_PREDICTED	XM_221216.4	XM_221216.4		303747	109489512	XM_221216.4	Cd7_predicted	XP_221216.1	ILMN_1366993	0003780402	S	630	CCGCAAGATACCATGTACCCCCAACCAGTACCAATGAGTCCCTCTGCCCG	10	-	110250451-110250464:110250465-110250500	10q32.3	PREDICTED: Rattus norvegicus CD7 antigen (predicted) (Cd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659311-S	ILMN_271000	RBBP5_PREDICTED	XM_001060117.1	XM_001060117.1		304794	109498614	XM_001060117.1	Rbbp5_predicted	XP_001060117.1	ILMN_1359479	0004230647	S	2555	AGGTTCTTTCTGTGGGTGTGGGGTACTGTGCAAGGGCTGACTTGAGGCCC				13q13	PREDICTED: Rattus norvegicus retinoblastoma binding protein 5 (predicted) (Rbbp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648697-S	ILMN_59445	RGD1306323_PREDICTED	XM_232798.4	XM_232798.4		313085	109474735	XM_232798.4	RGD1306323_predicted	XP_232798.3	ILMN_1367501	0001770435	S	2409	GTGCTCGAGATGGTCCAAGAGACAGCAGCATCAGCTTCCTCAGCAGCTCA	5	-	30582846-30582895	5q13	PREDICTED: Rattus norvegicus similar to Protein C8orf1 (hT41) (predicted) (RGD1306323_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653385-S	ILMN_50196	LOC503182	XM_578705.1	XM_578705.1		503182	62653385	XM_578705.1	LOC503182	XP_578705.1	ILMN_1349460	0000380279	S	213	CCCGTGTCTACATCTGTAGGGTCACATCCCGTGTCTACATCTGTAGGGTC					PREDICTED: Rattus norvegicus similar to a-agglutinin core protein AGA1 - yeast (Saccharomyces cerevisiae) (LOC503182), mRNA.					
Rattus norvegicus	RefSeq	GI_62660105-S	ILMN_47947	LOC498326	XM_573550.1	XM_573550.1		498326	62660105	XM_573550.1	LOC498326	XP_573550.1	ILMN_1349401	0003120672	S	404	GCTGCCACAGCCACCAGAAGGACAGTGTTACAGCAATTAAACAAAAAGAA					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 variant 1 (LOC498326), mRNA.					
Rattus norvegicus	RefSeq	GI_62652948-S	ILMN_276222	ZCRB1	NM_001034940.1	NM_001034940.1		362990	77917575	NM_001034940.1	Zcrb1	NP_001030112.1	ILMN_1373543	0006860497	S	686	AACAAATGGAGACCCAGCACAGGGGGTCCCTCGACCTCCGATGATTCTAG	7	-	131853210-131853259	7q35	Rattus norvegicus zinc finger CCHC-type and RNA binding motif 1 (Zcrb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The minor (U12-dependent) spliceosome is composed of the snRNPs, U11, U12, U4atac, U6atac, and U5 (which is also a component of the major spliceosome). This minor form of the spliceosome is responsible for the splicing of the majority of introns with atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site [goid 5689] [evidence IEA]; The minor (U12-dependent) spliceosome is composed of the snRNPs, U11, U12, U4atac, U6atac, and U5 (which is also a component of the major spliceosome). This minor form of the spliceosome is responsible for the splicing of the majority of introns with atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site [goid 5689] [evidence ISS]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124878; RGD1309851	MGC124878; RGD1309851
Rattus norvegicus	RefSeq	GI_62666439-A	ILMN_302177	PGRMC1	NM_021766.1	NM_021766.1		291948	11120719	NM_021766.1	Pgrmc1	NP_068534.1	ILMN_1376434	0006760463	S	1601	ACAAAACTCGTAGTCGCTTCAAAAATAGTAGTCAGGTGTCTAGGTCTTGG	X	-	8265733-8265782	Xq12	Rattus norvegicus progesterone receptor membrane component 1 (Pgrmc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	VEMA; MPR; 25-Dx; 25Dx	VEMA; MPR; 25-Dx; 25Dx
Rattus norvegicus	RefSeq	GI_33285020-S	ILMN_279169	CHP2	NM_182738.1	NM_182738.1		308965	33285020	NM_182738.1	Chp2	NP_877402.1	ILMN_1369323	0005420402	S	1046	CCTCTTAGCCCTCTAACCCAGAGGACGGGATGTCATACTCCAGAAATGCC				1q36	Rattus norvegicus calcineurin B homologous protein 2 (Chp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence TAS]	The regulation of the levels, transport, and metabolism of sodium ions within a cell or between a cell and its external environment [goid 6883] [evidence TAS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence TAS]	chp-2	chp-2
Rattus norvegicus	RefSeq	GI_62078990-S	ILMN_275310	LOC360807	NM_001014128.1	NM_001014128.1		360807	62078990	NM_001014128.1	LOC360807	NP_001014150.1	ILMN_1374759	0006520017	S	1636	CGGGTCCTTGTTCACCAAACAGCTAGTGTTCTAGCTTGCATGGGTGTTGC	12	+	33996897-33996946	12q16	Rattus norvegicus LOC360807 (LOC360807), mRNA.					
Rattus norvegicus	RefSeq	GI_62644651-S	ILMN_64958	SIAT7E	XM_345318.2	XM_345318.2		365984	62644651	XM_345318.2	Siat7E	XP_345319.2	ILMN_1359611	0006290546	S	1878	AACGCTCTGTGTAGTATCCAAGCTTCCCAGGCAGTGCGACACGCTGACCT					PREDICTED: Rattus norvegicus sialyltransferase 7E (Siat7E), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981353-S	ILMN_280407	ABCB4	NM_012690.1	NM_012690.1		24891	6981353	NM_012690.1	Abcb4	NP_036822.1	ILMN_1370214	0006370181	S	3557	TGGAGGCCAGAAACAGAGGATTGCTATCGCCCGAGCCCTCATCAGACAGC	4	+	22003322-22003371	4q12	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 4 (Abcb4), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O + xenobiotic(in) = ADP + phosphate + xenobiotic(out) [goid 8559] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	Mdr2; Pgy3	Mdr2; Pgy3
Rattus norvegicus	RefSeq	Rn.82691	ILMN_280407	ABCB4	NM_012690.1	NM_012690.1		24891	6981353	NM_012690.1	Abcb4	NP_036822.1	ILMN_1530226	0006840022	S	3843	ATTCAAGCTGGCACACAGAACTTATGAACTTGTTACAGTATATTTTTAAA	4	+	22004259-22004285:22004286-22004308	4q12	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 4 (Abcb4), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O + xenobiotic(in) = ADP + phosphate + xenobiotic(out) [goid 8559] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	Mdr2; Pgy3	Mdr2; Pgy3
Rattus norvegicus	RefSeq	GI_62655915-S	ILMN_61805	RGD1307486_PREDICTED	XM_213268.3	XM_213268.3		287168	62655915	XM_213268.3	RGD1307486_predicted	XP_213268.1	ILMN_1351642	0004280592	S	523	CCTCCCTGAGGTCTTTCCCAGAATCCCCAATAAATGGTTGACGAAAGAAC					PREDICTED: Rattus norvegicus similar to hemoglobin:SUBUNIT=zeta (predicted) (RGD1307486_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663821-S	ILMN_47861	LOC502127	XM_577575.1	XM_577575.1		502127	62663821	XM_577575.1	LOC502127	XP_577575.1	ILMN_1366808	0000130093	S	430	CTGACCTATCCCCCACTTTGGTCCAAGTGGTCCTTCAGAATCGCAGAGGG					PREDICTED: Rattus norvegicus similar to envelope protein (LOC502127), mRNA.					
Rattus norvegicus	RefSeq	GI_62653195-S	ILMN_270058	RGD1564127_PREDICTED	XM_345891.2	XM_345891.2		367007	62653195	XM_345891.2	RGD1564127_predicted	XP_345892.2	ILMN_1349841	0004010452	S	225	GCATAAACAGCCAATGAACGTGTTGGAAGGTGCTTCAGCCTTAGTGGTTT	8	-	768633-768682	8q11	PREDICTED: Rattus norvegicus similar to groucho protein GRG1-LDLZ2; Grg1-LDLZ2 (predicted) (RGD1564127_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641442-S	ILMN_63525	LOC502361	XM_577833.1	XM_577833.1		502361	62641442	XM_577833.1	LOC502361	XP_577833.1	ILMN_2039025	0007330270	S	403	ACCAACCCTCATGCACTGACAACCAGCCCTCATGCACTGACAACCAGCCC					PREDICTED: Rattus norvegicus similar to putative protein (5I806) (LOC502361), mRNA.					
Rattus norvegicus	RefSeq	GI_62651475-S	ILMN_278972	RGD1308350	XM_001072750.1	XM_001072750.1		362790	109480040	XM_001072750.1	RGD1308350	XP_001072750.1	ILMN_1355015	0001780398	S	2904	CCTGGAGAGGATGAGGACGAAGAGGACACGGCCCTAGAATCTGCACTCGA					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC13251 (RGD1308350), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cellular component [goid 16043] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641450-S	ILMN_269660	RGD1563534_PREDICTED	XM_001079201.1	XM_001079201.1		293444	109462787	XM_001079201.1	RGD1563534_predicted	XP_001079201.1	ILMN_1358495	0003780373	S	4722	CCTAGGCACCCCCCAGCATGTCAGAAAGAGGTTTGGTCAAGTATACACTC				1q35	PREDICTED: Rattus norvegicus similar to ATP-binding cassette transporter sub-family A member 16 (predicted) (RGD1563534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645070-S	ILMN_268441	ZEB2	NM_001033701.1	NM_001033701.1		311071	76096337	NM_001033701.1	Zeb2	NP_001028873.1	ILMN_1359138	0002680524	S	3302	TGGAACCCACCGAGCTGCTGATGAACCGGGCTTACTTGCAGAGCATCACC	3	-	25513305-25513354	3q12	Rattus norvegicus zinc finger E-box binding homeobox 2 (Zeb2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; The creation of greater cell numbers in the forebrain due to cell division of progenitor cells [goid 21846] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30177] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence ISS]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641055-S	ILMN_67473	LOC365321	XM_574505.1	XM_574505.1		365321	62641055	XM_574505.1	LOC365321	XP_574505.1	ILMN_1366081	0006510685	S	276	AAAGTCATCCATGACAACTTTGCTCGGTGTGATGGCTGTGGGGCAGCCCA				1q32	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC365321), mRNA.					
Rattus norvegicus	RefSeq	GI_47576062-S	ILMN_292490	OLR1422	NM_001000007.1	NM_001000007.1		287310	47576062	NM_001000007.1	Olr1422	NP_001000007.1	ILMN_1350740	0000450168	S	498	CTGTGGGTCGCGGGAGATCTATCACTTCTTCTGTGAGGTTCTTGCTGTGA	10	-	44323305-44323354	10q22	Rattus norvegicus olfactory receptor 1422 (Olr1422), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-44337475-44336531_ORF; Olr1422	ratchr10-44337475-44336531_ORF; Olr1422
Rattus norvegicus	RefSeq	GI_62650469-S	ILMN_275866	MATN3_PREDICTED	XM_001068342.1	XM_001068342.1		313954	109479065	XM_001068342.1	Matn3_predicted	XP_001068342.1	ILMN_1367068	0002690440	S	1114	ACACACGGTTGCCAGCACATCTGTGTGAATGACGGAGCCGGGTCCCATCA				6q14	PREDICTED: Rattus norvegicus matrilin 3 (predicted) (Matn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664020-S	ILMN_275817	COLEC12	NM_001025721.1	NM_001025721.1		361289	71043879	NM_001025721.1	Colec12	NP_001020892.1	ILMN_1359457	0006760707	S	2444	GGATACCTACTGCACCATAACCGAAGGACTAGAGAGCTAAAATGCTCCCC	18	+	1187843-1187892	18p13	Rattus norvegicus collectin sub-family member 12 (Colec12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence ISS]; The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Combining with a molecular pattern based on a repeating or polymeric structure, such as a polysaccharide or peptidoglycan, to initiate a change in cell activity. Such molecular patterns are sometimes associated with potential pathogens [goid 8329] [evidence ISS]; Combining with a molecular pattern based on a repeating or polymeric structure, such as a polysaccharide or peptidoglycan, to initiate a change in cell activity. Such molecular patterns are sometimes associated with potential pathogens [goid 8329] [evidence IEA]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence ISS]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence IEA]	MGC114569	MGC114569
Rattus norvegicus	RefSeq	GI_61557404-S	ILMN_273129	LZIC	NM_001013241.1	NM_001013241.1		366507	61557404	NM_001013241.1	Lzic	NP_001013259.1	ILMN_1370275	0001500706	S	2430	ATGCTGTGCAGCTCCCACCCGAGCACCAAGTCATGCCCATCGTTCATGCA	5	+	166579029-166579078	5q36	Rattus norvegicus leucine zipper and CTNNBIP1 domain containing (Lzic), mRNA.			Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661670-S	ILMN_55127	LOC290339	XM_214221.3	XM_214221.3		290339	62661670	XM_214221.3	LOC290339	XP_214221.3	ILMN_1358896	0004150541	S	570	TTAAGAGGAGGCTGGGGCAGAAGCAACCTCACAGGTGTGAACGGAGGCAC					PREDICTED: Rattus norvegicus similar to a disintegrin and metalloproteinase domain 28 (LOC290339), mRNA.					
Rattus norvegicus	RefSeq	GI_62650017-S	ILMN_59448	RGD1305820_PREDICTED	XM_233671.4	XM_233671.4		313705	109475848	XM_233671.4	RGD1305820_predicted	XP_233671.3	ILMN_1350887	0006510520	S	4737	CCCCAGCTCTATGCAGCCAGTGTTTGTTGACCCTGCTGTTGCGGTCCAAG	5	-	165319457-165319506	5q36	PREDICTED: Rattus norvegicus similar to KIAA1337 protein (predicted) (RGD1305820_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576456	ILMN_298619	OLR1596	NM_001000501.1	NM_001000501.1		304991	47576456	NM_001000501.1	Olr1596	NP_001000501.1	ILMN_1650003	0006520427	S	786	TCGATTCTCCGCTACCTACTCCTTGTTCTGGGACACTGCCATTGCTCTGG	13	+	89938237-89938286	13q24	Rattus norvegicus olfactory receptor 1596 (Olr1596), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1596; ratchr13-90126336-90127301_ORF	Olr1596; ratchr13-90126336-90127301_ORF
Rattus norvegicus	RefSeq	GI_62646787-S	ILMN_282307	RGD1306626	NM_001039612.1	NM_001039612.1		362319	88853860	NM_001039612.1	RGD1306626	NP_001034701.1	ILMN_1356781	0003190594	S	684	CCTGGTATTCTTTACCATTCTGGAAGGCCTGCTGCTAGGAAGCATGTCCG	4	-	27191129-27191166:27193417-27193428	4q13	Rattus norvegicus similar to RIKEN cDNA 4930500J03 (RGD1306626), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC125025	MGC125025
Rattus norvegicus	RefSeq	GI_56912226-S	ILMN_271101	PRIM1	NM_001008768.1	NM_001008768.1		246327	56912226	NM_001008768.1	Prim1	NP_001008768.1	ILMN_1353345	0000780161	S	1512	CAAAGAGACCTGGTTTCTGAGACCAAAGAGGGTGTCAAGGGCCCTGAAAG	7	+	1322988-1323029	7q11	Rattus norvegicus DNA primase, p49 subunit (Prim1), mRNA.	A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence NAS]; The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis [goid 6269] [evidence IEA]	Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence IEA]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]	MGC109113	MGC109113
Rattus norvegicus	RefSeq	GI_62664929-S	ILMN_275124	SALL1_PREDICTED	XM_001066559.1	XM_001066559.1		307740	109508497	XM_001066559.1	Sall1_predicted	XP_001066559.1	ILMN_1356064	0003840068	S	4315	AAGCTGCCAGAGCGTTTCTACTCAAAATGCCGCCCGAGGTTGCCTCCTGC				19p11	PREDICTED: Rattus norvegicus sal-like 1 (Drosophila) (predicted) (Sall1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164000-S	ILMN_271376	TRYX5	NM_001009173.1	NM_001009173.1		408205	57164000	NM_001009173.1	Tryx5	NP_001009173.1	ILMN_1371864	0002680575	S	629	GCAGTGGGAGGGTGCATGGAATACTGTCCTGGGGGAAAGCAGGTATAACC	4	-	68545785-68545834	4q22	Rattus norvegicus trypsin X5 (Tryx5), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644344-S	ILMN_48698	CHI3L4_PREDICTED	XM_227567.4	XM_227567.4		295351	109465409	XM_227567.4	Chi3l4_predicted	XP_227567.4	ILMN_1366656	0003710594	S	594	CCCAAGGCTGCTTCTCACTGCCACAGTAGCTGGAGTCATTGACACAATCC	2	+	201601609-201601658	2q34	PREDICTED: Rattus norvegicus chitinase 3-like 4 (predicted) (Chi3l4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654675-S	ILMN_69606	LOC363186	XM_347110.2	XM_347110.2		363186	62654675	XM_347110.2	LOC363186	XP_347111.2	ILMN_1365770	0006450133	S	366	GGAGAGAACGAGAGGCCACCATCAAAGCTCGGGGAGTTCATCTGCCAAGA					PREDICTED: Rattus norvegicus hypothetical LOC363186 (LOC363186), mRNA.					
Rattus norvegicus	RefSeq	GI_62652735-S	ILMN_271579	KDELR3_PREDICTED	XM_001076531.1	XM_001076531.1		315131	109482564	XM_001076531.1	Kdelr3_predicted	XP_001076531.1	ILMN_1359104	0004850537	S	1291	AATGACACATTCCGGTTGGAGTTCCTTGTGGTCCCAGTGACCGGCCTTTC				7q34	PREDICTED: Rattus norvegicus KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 (predicted) (Kdelr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650948-S	ILMN_62497	SLC39A9_PREDICTED	XM_234355.3	XM_234355.3		314275	62650948	XM_234355.3	Slc39a9_predicted	XP_234355.3	ILMN_1366632	0004070364	S	1586	CCAGTAGAGCAATGGAGGTGGGACTGGCTTTTGAAGAGGGGTCTGTTATC				6q24	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 9 (predicted) (Slc39a9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959239	ILMN_271092	ADARB2	NM_133302.1	NM_133302.1		117088	18959239	NM_133302.1	Adarb2	NP_579836.1	ILMN_1650117	0007000735	S	2574	GACTCCTTGGCTATTGGACCAGAGTGAGATGCCCGGAGAGGATGAAGCCG	17	-	72681078-72681127	17q12.1-q12.2	Rattus norvegicus adenosine deaminase, RNA-specific, B2 (Adarb2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Red2; Adar3	Red2; Adar3
Rattus norvegicus	RefSeq	GI_30039678-A	ILMN_281174	PRNP	NM_012631.2	NM_012631.2		24686	30039678	NM_012631.2	Prnp	NP_036763.1	ILMN_1376441	0002760292	S	1922	AGTGTGGAACGCACTGGCCGTTCTGTGCAGTACTAAGTGTGACCCTTGGG	3	+	119691287-119691336	3q36	Rattus norvegicus prion protein (Prnp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence TAS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence TAS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Prn; PrP	Prn; PrP
Rattus norvegicus	RefSeq	GI_62658860-S	ILMN_52042	ZCCHC8_PREDICTED	XM_222159.4	XM_222159.4		288661	109495849	XM_222159.4	Zcchc8_predicted	XP_222159.2	ILMN_1350577	0003360154	S	2433	TCACTGACAACAACCAGGGCGTGCGGGAGCTGGGTCACAGATGCTTGTCT	12	+	34029516-34029565	12q16	PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8 (predicted) (Zcchc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18426831-S	ILMN_58716	IL23A	NM_130410.1	NM_130410.1		155140	18426831	NM_130410.1	Il23a	NP_569094.1	ILMN_1369615	0003120292	S	339	AGCACCTACTGGACTCGGACATCTTCACAGGGGAGCCTTCTCTACTCCCG				7q11	Rattus norvegicus Interleukin 23, alpha subunit p19 (Il23a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654201-S	ILMN_68135	RGD1310507	XM_236574.4	XM_236574.4		315963	109483891	XM_236574.4	RGD1310507	XP_236574.4	ILMN_1359567	0001770064	S	2209	ACTGGGGACCCAACTGCTTGCCTCCATGTGGACCTGTGCCGACATCTCTA	8	-	108265017-108265066	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300017J02 (RGD1310507), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence ISS]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527374-S	ILMN_302838	THUMPD1	NM_001009688.1	NM_001009688.1		309041	57527374	NM_001009688.1	Thumpd1	NP_001009688.1	ILMN_1369217	0000070056	S	2510	GCATGCTGGTCCTGCTCTGCAGACAAAGGAGTTAAGCCTGGTCCTGTAGG	1	-	177997342-177997391	1q35	Rattus norvegicus THUMP domain containing 1 (Thumpd1), mRNA.				MGC105734	MGC105734
Rattus norvegicus	RefSeq	GI_62651326-S	ILMN_58036	LOC500731	XM_576110.1	XM_576110.1		500731	62651326	XM_576110.1	LOC500731	XP_576110.1	ILMN_1363434	0004200010	S	1449	CCTCAGGCTCAGACTGAAAGCCCAGGCCTACCTGAGGATCCACATCTCCT					PREDICTED: Rattus norvegicus similar to Immunoglobulin heavy chain (gamma polypeptide) (LOC500731), mRNA.					
Rattus norvegicus	RefSeq	GI_6981375-S	ILMN_290376	PNLIP	NM_013161.1	NM_013161.1		25702	6981375	NM_013161.1	Pnlip	NP_037293.1	ILMN_1373253	0002230139	S	1410	ACACTGTCTGCATGTTAGAAGGCTGCTGATGTGTGACCACCAAGTCCCAC	1	+	265120895-265120911:265120912-265120944	1q55	Rattus norvegicus pancreatic lipase (Pnlip), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; Uptake of cholesterol into the blood by absorption from the small intestine [goid 30299] [evidence IEA]; Uptake of cholesterol into the blood by absorption from the small intestine [goid 30299] [evidence ISS]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	PANLI	PANLI
Rattus norvegicus	RefSeq	GI_12018275-S	ILMN_278096	HPSE	NM_022605.1	NM_022605.1		64537	12018275	NM_022605.1	Hpse	NP_072127.1	ILMN_1370611	0004780050	S	2757	GAGGCTCTCCCAGCAAGCCTTTCCTCAAGTCTCAAGTCTTACTGGCTAGG				14p22	Rattus norvegicus heparanase (Hpse), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the cleavage of heparan sulfate; can degrade both heparan sulfate and heparin glycosaminoglycan chains [goid 30305] [evidence IDA]	Hep; Hpa	Hep; Hpa
Rattus norvegicus	RefSeq	GI_47576820-S	ILMN_291874	OLR19	NM_001000117.1	NM_001000117.1		293081	47576820	NM_001000117.1	Olr19	NP_001000117.1	ILMN_1367987	0004730487	S	347	CCGTTATGGCTTATGACCGGCACGTGGCTGTATGCCGTCCTCTACATTAT	1	-	142492136-142492185	1q32	Rattus norvegicus olfactory receptor 19 (Olr19), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr19	Olr19
Rattus norvegicus	RefSeq	GI_62718043-S	ILMN_270222	LOC301124	XM_001060121.1	XM_001060121.1		301124	109486604	XM_001060121.1	LOC301124	XP_001060121.1	ILMN_1350600	0005270059	S	633	GGACATGGGATGGTCTCCAACCTGCTGTTCTTCTGGGAGGATGTAGGGTG					PREDICTED: Rattus norvegicus hypothetical LOC301124 (LOC301124), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646690-S	ILMN_53918	PHTF2_PREDICTED	XM_238334.3	XM_238334.3		296762	62646690	XM_238334.3	Phtf2_predicted	XP_238334.3	ILMN_1374687	0001780204	S	2888	AATCAAGCTCATCAAAGCCCTTGGGGTGATGGAGACCCTGACAGGCCACG				4q11	PREDICTED: Rattus norvegicus putative homeodomain transcription factor 2 (predicted) (Phtf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652112-S	ILMN_52632	TBC1D15	XM_345825.3	XM_345825.3		366896	109480516	XM_345825.3	Tbc1d15	XP_345826.3	ILMN_1363077	0006520538	S	1884	CCTGGGACTTCAGGACAGCGAAGTTACAACGCCAGATTCCGACACTGATG	7	-	54447073-54447122	7q22	PREDICTED: Rattus norvegicus TBC1 domain family, member 15 (Tbc1d15), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_32189321-S	ILMN_281858	GPR64	NM_181366.1	NM_181366.1		266735	32189321	NM_181366.1	Gpr64	NP_852031.1	ILMN_1357670	0001770441	S	4244	GTGACAAGGGGGAGCAGCTACTGGGAAGAGTGAACTGTCGTGTGATATTG	X	-	55585685-55585734	Xq21	Rattus norvegicus G protein-coupled receptor 64 (Gpr64), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Re6; He6	Re6; He6
Rattus norvegicus	RefSeq	GI_62650038-S	ILMN_60440	RGD1562168_PREDICTED	XM_575960.2	XM_575960.2		362662	109475850	XM_575960.2	RGD1562168_predicted	XP_575960.1	ILMN_1364684	0003780053	S	393	GCGAAGGCCAGGTGTGCAAACAAACCTTCCAGAGAGCCTGATCTATGTCC	5	-	166528615-166528624:166528625-166528664	5q36	PREDICTED: Rattus norvegicus similar to retinoid binding protein 7 (predicted) (RGD1562168_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665783-S	ILMN_65893	LOC365544	XM_345087.2	XM_345087.2		365544	62665783	XM_345087.2	LOC365544	XP_345088.2	ILMN_1354344	0002650632	S	4362	TGGGGATGAGACCTTTCAATGCCAGCAAACCTCTGTCTGCCCCCGAGAGC				20p12	PREDICTED: Rattus norvegicus similar to uromodulin-like 1 (LOC365544), mRNA.					
Rattus norvegicus	RefSeq	GI_62666224-S	ILMN_302156	LOC680431	XM_001057154.1	XM_001057154.1		680431	109509554	XM_001057154.1	LOC680431	XP_001057154.1	ILMN_1350061	0005570142	S	660	CCCTGTGGATGTGGATGGAAATCCTGGTGGCAAGGATCACGGGGTTGTCC	20	+	38277315-38277364	20q12	PREDICTED: Rattus norvegicus similar to double homeobox 4c (LOC680431), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742735-S	ILMN_276661	SCNN1B	NM_012648.1	NM_012648.1		24767	25742735	NM_012648.1	Scnn1b	NP_036780.1	ILMN_1349849	0005720685	S	2271	CAACCTCAGTCTCCCAGAATCAGTGACCTTGCCCTAGTTGGCATTGGCTG	1	+	180747946-180747995	1q36	Rattus norvegicus sodium channel, nonvoltage-gated 1 beta (Scnn1b), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IMP]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence IMP]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15280] [evidence IMP];  [goid 15280] [evidence IEA];  [goid 15280] [evidence IDA];  [goid 15280] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence IPI]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence IDA]	RNENACB	RNENACB
Rattus norvegicus	RefSeq	GI_62655315-S	ILMN_56771	LOC503264	XM_578799.1	XM_578799.1		503264	62655315	XM_578799.1	LOC503264	XP_578799.1	ILMN_1353311	0006510707	S	2010	AGTAAGCCCGAAGAGAAATCCGCAGGTGAAAAGCAGAGGCAGATAGAGGG					PREDICTED: Rattus norvegicus similar to Tripartite motif protein 3 (RING finger protein 22) (Brain-expressed RING finger protein) (RING finger protein 97) (LOC503264), mRNA.					
Rattus norvegicus	RefSeq	GI_62657779-S	ILMN_47940	LOC288174	XM_213637.3	XM_213637.3		288174	62657779	XM_213637.3	LOC288174	XP_213637.3	ILMN_1369067	0006400538	S	1133	TCCGAAGCCTCTAAGCACTTTGGTTCCACGCGTACCTTGTGGTGGGCTGG				11q12	PREDICTED: Rattus norvegicus similar to Nit protein 2 (predicted) (LOC288174), mRNA.					
Rattus norvegicus	RefSeq	GI_62645678-S	ILMN_286006	CASC4_PREDICTED	XM_001077041.1	XM_001077041.1		362204	109470524	XM_001077041.1	Casc4_predicted	XP_001077041.1	ILMN_1359712	0002570148	S	1380	TGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGACAAGCAGGCTGAGC				3q35	PREDICTED: Rattus norvegicus cancer susceptibility candidate 4 (predicted), transcript variant 4 (Casc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660575-S	ILMN_58239	CENTD1_PREDICTED	XM_223437.4	XM_223437.4		305367	109499754	XM_223437.4	Centd1_predicted	XP_223437.4	ILMN_1374669	0001090286	S	5008	AAGCTGCCATCGAAGGTCATTGAGGAACTTAGTGTGGTTCTCCAGAGGTC	14	+	50787915-50787964	14q11	PREDICTED: Rattus norvegicus centaurin, delta 1 (predicted) (Centd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638674-S	ILMN_267483	RGD1309374	XM_001055914.1	XM_001055914.1		361485	109460869	XM_001055914.1	RGD1309374	XP_001055914.1	ILMN_1350772	0002100519	S	2309	TGGCCCCAGCCAATTGCCAAGTGTACTTAAAAACAAGGCTCACCCTGGCC					PREDICTED: Rattus norvegicus LOC361485 (RGD1309374), mRNA.					
Rattus norvegicus	RefSeq	GI_62657608	ILMN_58771	LOC498057	XM_579776.1	XM_579776.1		498057	62657608	XM_579776.1	LOC498057	XP_579776.1	ILMN_1650213	0005270575	S	226	GGGGACACTGTTTTCCTTGGAGATGAAGCCATCCATTAGTGTGCTCCCAG					PREDICTED: Rattus norvegicus LOC498057 (LOC498057), mRNA.					
Rattus norvegicus	RefSeq	GI_62639118-S	ILMN_61590	ZFP112_PREDICTED	XM_218433.4	XM_218433.4		308420	109458332	XM_218433.4	Zfp112_predicted	XP_218433.4	ILMN_1361861	0006980050	S	994	GCAGAAGGGAGAGCCTACAAGTGTGAACTGTGCGGTAAGGGCTTCAGCGG	1	+	79344284-79344333	1q21	PREDICTED: Rattus norvegicus zinc finger protein 112 (predicted) (Zfp112_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606380-S	ILMN_271728	OLR137	NM_001001283.1	NM_001001283.1		405003	47606380	NM_001001283.1	Olr137	NP_001001283.1	ILMN_1352058	0005550041	S	759	GCTGGCAGTTCTGGTTCTCTATGTACCCATGGTTGGTGTGTCTGTGACTC	1	+	161796994-161797043	1q32	Rattus norvegicus olfactory receptor 137 (Olr137), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr137	Olr137
Rattus norvegicus	RefSeq	GI_62657543-S	ILMN_272074	CGGBP1_PREDICTED	XM_001063614.1	XM_001063614.1		288353	109493756	XM_001063614.1	Cggbp1_predicted	XP_001063614.1	ILMN_1352176	0005860711	S	687	GTGAAAATGTGCCTGGAAGCCAACATCCCCCTGGAGAAGGCTGACCATCC				11p12	PREDICTED: Rattus norvegicus CGG triplet repeat binding protein 1 (predicted) (Cggbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665668-A	ILMN_286908	RT1-A3	NM_001008830.1	NM_001008830.1		309627	57012347	NM_001008830.1	RT1-A3	NP_001008830.1	ILMN_1376530	0006200575	S	1204	CTGATGCTCCCTGTGATTCTATGGCTTCTGTGTGAAGGACTGTGGAGCCC	20	+	5002027-5002076	20p12	Rattus norvegicus RT1 class I, A3 (RT1-A3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]		RT1.A3; RT1-A	RT1.A3; RT1-A
Rattus norvegicus	RefSeq	GI_62646461-S	ILMN_63908	LOC499948	XM_580038.1	XM_580038.1		499948	62646461	XM_580038.1	LOC499948	XP_580038.1	ILMN_1368311	0000940309	S	526	GGGGCCGCGACGAGTGAGACAGAAAGAGTGAGGGGAAAACACCTAGTGAA					PREDICTED: Rattus norvegicus LOC499948 (LOC499948), mRNA.					
Rattus norvegicus	RefSeq	GI_62650665-S	ILMN_290636	STRN3	NM_001029897.1	NM_001029897.1		114520	71361652	NM_001029897.1	Strn3	NP_001025068.1	ILMN_1649981	0002630224	S	3807	AACTTGAATCAGGATACAGAAGTCTGCTGGATTTGGACTAGTCTTCCCTG	6	-	71709254-71709303	6q22	Rattus norvegicus striatin, calmodulin binding protein 3 (Strn3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	Sg2na; Gs2na	Sg2na; Gs2na
Rattus norvegicus	RefSeq	Rn.7875	ILMN_282972	SERPINA11	NM_001008776.1	NM_001008776.1		362774	56912217	NM_001008776.1	Serpina11	NP_001008776.1	ILMN_1530233	0002480411	S	633	AGTTCGATCGTGACACCCTTATGGTTCTCTTGAACTATATCTTCTTCAAA	6	-	128040813-128040862	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 (Serpina11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	MGC124917	MGC124917
Rattus norvegicus	RefSeq	GI_56912217-S	ILMN_282972	SERPINA11	NM_001008776.1	NM_001008776.1		362774	56912217	NM_001008776.1	Serpina11	NP_001008776.1	ILMN_1361612	0000730239	S	1195	TATGGGGCAGCTCAACAAAACTGTCTCCAGGGTATCGCACAAGGCCGTCG	6	-	128036850-128036899	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 (Serpina11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	MGC124917	MGC124917
Rattus norvegicus	RefSeq	GI_40254799-A	ILMN_294105	ART2B	NM_198735.2	NM_198735.2		293152	71534289	NM_198735.2	Art2b	NP_942030.1	ILMN_1376720	0005910537	S	698	CACAAGGCTACAACGAAATTTTCCTGGACTCCCCGAAGAGGAAGAAGAGC	1	-	159057573-159057622	1q32	Rattus norvegicus ADP-ribosyltransferase 2b (Art2b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The transfer, from NAD, of ADP-ribose to peptidyl-arginine to form omega-N-(ADP-ribosyl)-L-arginine [goid 18120] [evidence IEA]; The transfer, from NAD, of ADP-ribose to peptidyl-arginine to form omega-N-(ADP-ribosyl)-L-arginine [goid 18120] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]	Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IDA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IMP]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Art2a; MGC116041; Art2; RT6.2; Rt6	Art2a; MGC116041; Art2; RT6.2; Rt6
Rattus norvegicus	RefSeq	GI_62640979-I	ILMN_294105	ART2B	NM_198735.2	NM_198735.2		293152	71534289	NM_198735.2	Art2b	NP_942030.1	ILMN_1376141	0001500022	S	1023	GTCAGCCATTAAAATTTACACCTAAACTTCAACTATACTACCTTTTTACA	1	-	159055578-159055627	1q32	Rattus norvegicus ADP-ribosyltransferase 2b (Art2b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The transfer, from NAD, of ADP-ribose to peptidyl-arginine to form omega-N-(ADP-ribosyl)-L-arginine [goid 18120] [evidence IEA]; The transfer, from NAD, of ADP-ribose to peptidyl-arginine to form omega-N-(ADP-ribosyl)-L-arginine [goid 18120] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]	Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IDA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IMP]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Art2a; MGC116041; Art2; RT6.2; Rt6	Art2a; MGC116041; Art2; RT6.2; Rt6
Rattus norvegicus	RefSeq	GI_62662179-S	ILMN_292705	RGD1565549_PREDICTED	XM_001059461.1	XM_001059461.1		306254	109503767	XM_001059461.1	RGD1565549_predicted	XP_001059461.1	ILMN_1355005	0004780411	S	5212	GCCGCCTACCTTCTCACTGGCTCAAAAGTAAAGGGGCACACACCACCATG				16p16	PREDICTED: Rattus norvegicus similar to polybromo-1 (predicted), transcript variant 7 (RGD1565549_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656686-S	ILMN_63391	LOC497971	XM_573163.1	XM_573163.1		497971	62656686	XM_573163.1	LOC497971	XP_573163.1	ILMN_1361078	0001090064	S	2	CACTGAACCCTGTTCCCTCTCTTAGAACTAGCATGTTGGGTGTCATGTAG					PREDICTED: Rattus norvegicus similar to Ccl9_predicted protein (LOC497971), mRNA.					
Rattus norvegicus	RefSeq	GI_62644520-S	ILMN_57471	LOC292158	XM_217693.3	XM_217693.3		292158	62644520	XM_217693.3	LOC292158	XP_217693.3	ILMN_1358833	0004760193	S	2023	CCTTAGCAGCGGGAGACGATCAGGGCAGTGTGCGGTTCTTGGAAGCCCAA					PREDICTED: Rattus norvegicus similar to alpha 1 type XXIV collagen precursor (LOC292158), mRNA.					
Rattus norvegicus	RefSeq	GI_62645826-S	ILMN_268446	FAHD2A_PREDICTED	XM_001081101.1	XM_001081101.1		296131	109470789	XM_001081101.1	Fahd2a_predicted	XP_001081101.1	ILMN_1362647	0000510129	S	879	CTGTCGAGTGAATGGGGAGATTGTCCAGAGCAGCAACACCAACCAGATGG				3q36	PREDICTED: Rattus norvegicus fumarylacetoacetate hydrolase domain containing 2A (predicted) (Fahd2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642718-S	ILMN_57829	RGD1562968_PREDICTED	XM_342171.3	XM_342171.3		361877	109464246	XM_342171.3	RGD1562968_predicted	XP_342172.3	ILMN_1349542	0003450576	S	1344	CACGTGATTCAAGCAACTGTACGGAGCTGCCCATTAGCTGCCCCAACTGA	2	+	21926520-21926569	2q12	PREDICTED: Rattus norvegicus similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2) (predicted) (RGD1562968_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527554-S	ILMN_281663	LMO4	NM_001009708.1	NM_001009708.1		362051	57527554	NM_001009708.1	Lmo4	NP_001009708.1	ILMN_1371638	0000840139	S	1396	GTATGCATGTGAGTGTTCTTGTCCTGATGTTGCTCCGCCCATGACAAAGG	2	+	242514927-242514976	2q44	Rattus norvegicus LIM domain only 4 (Lmo4), mRNA.	Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105593	MGC105593
Rattus norvegicus	RefSeq	GI_62642911-S	ILMN_281170	RGD1305492_PREDICTED	XM_001066754.1	XM_001066754.1		294734	109465928	XM_001066754.1	RGD1305492_predicted	XP_001066754.1	ILMN_1369054	0000540494	S	3087	TTTCGTAGTGCAGTGAGTGCGAGAGAGGAGACGTGCCGGGCGTTCTTCCA				2q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700034P14 (predicted) (RGD1305492_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642912-S	ILMN_281170	RGD1305492_PREDICTED	XM_001066754.1	XM_001066754.1		294734	109465928	XM_001066754.1	RGD1305492_predicted	XP_001066754.1	ILMN_1349961	0004920672	S	542	CCACAGCAGCATGGTAGTGTTGAGATAGCTCTTTGTTGTCTGTATACGCT				2q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700034P14 (predicted) (RGD1305492_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667161-S	ILMN_284191	PCDH11X_PREDICTED	XM_001055860.1	XM_001055860.1		317204	109512231	XM_001055860.1	Pcdh11x_predicted	XP_001055860.1	ILMN_1364916	0005050184	S	3663	GCTGCACCAAACAACCGCACTGAAGGGGATGGCAACTCTGATCCTGAATC				Xq32	PREDICTED: Rattus norvegicus protocadherin 11 X-linked (predicted) (Pcdh11x_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426804-S	ILMN_274731	RETN	NM_144741.1	NM_144741.1		246250	21426804	NM_144741.1	Retn	NP_653342.1	ILMN_1357867	0002810020	S	511	GATGGGGAGAGCGCAGGGGGCAGGAAACGAGATGAGGGTCTGGAAATACA	12	-	2499671-2499720	12p12	Rattus norvegicus resistin (Retn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence IMP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62648866-S	ILMN_270344	IFNK_PREDICTED	XM_001065680.1	XM_001065680.1		313152	109476330	XM_001065680.1	Ifnk_predicted	XP_001065680.1	ILMN_1373268	0004570603	S	408	CGAGAGTGCATGGTAGACGAGGAGAACAAGAACACGGAGGAGGACAGTAC				5q22	PREDICTED: Rattus norvegicus interferon, kappa (predicted) (Ifnk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648897-S	ILMN_276672	SPAG8	XM_001070081.1	XM_001070081.1		362508	109476406	XM_001070081.1	Spag8	XP_001070081.1	ILMN_1358789	0003710411	S	1654	CCAGCATCCTTGTCGCTGGGGCAGCCTTTGCCTTACGAACTGGAGAACAG				5q22	PREDICTED: Rattus norvegicus sperm associated antigen 8 (Spag8), mRNA.					
Rattus norvegicus	RefSeq	GI_11067438-S	ILMN_295672	NEUROG3	NM_021700.1	NM_021700.1		60329	11067438	NM_021700.1	Neurog3	NP_067732.1	ILMN_1354337	0001450348	S	1432	GCTTTCTCCAGAGTGACCTAATCCAGTGTTGCGTCTTACCTCACTGGCTC	20	+	29524202-29524251	20q11	Rattus norvegicus neurogenin 3 (Neurog3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IDA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]	Relax; Ngn3	Relax; Ngn3
Rattus norvegicus	RefSeq	GI_58865953-A	ILMN_290357	DTNB	NM_001012191.1	NM_001012191.1		362715	58865953	NM_001012191.1	Dtnb	NP_001012191.1	ILMN_1376949	0001340097	S	3191	TCAACCTCCAGAGAGAAGAGCCAAGCCTATGGGAAGTGGGGAGGGACTGC	6	+	26742029-26742078	6q14	Rattus norvegicus dystrobrevin, beta (Dtnb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659002-A	ILMN_270480	RNF10	NM_001011904.1	NM_001011904.1		288710	58865385	NM_001011904.1	Rnf10	NP_001011904.1	ILMN_1376723	0000780037	S	2652	CGGTGGACAGTGATGGGGAGAGTGACAATTCTGACCGTGTTCCTGTGCCC	12	+	42642830-42642879	12q16	Rattus norvegicus ring finger protein 10 (Rnf10), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56799407-S	ILMN_284935	UBE2G1	NM_022690.2	NM_022690.2		64631	56799407	NM_022690.2	Ube2g1	NP_073181.1	ILMN_1360689	0004590408	S	1733	AGCATGCGCAGCTACAGGCTTTCTACATCTGGGATTGCTATTACAAATGC	10	+	59576709-59576758	10q24	Rattus norvegicus ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) (Ube2g1), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence TAS]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IDA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	Ubc7; MGC93103	Ubc7; MGC93103
Rattus norvegicus	RefSeq	GI_62653554-S	ILMN_275527	ARHGEF12	NM_001013246.1	NM_001013246.1		367072	61557420	NM_001013246.1	Arhgef12	NP_001013264.1	ILMN_1651003	0006900762	S	4114	GAGCCAGAGGGGGGTCTGGATGACAGTGGAGAGCACTTTTTTGATGCCCG	8	-	45987981-45988030	8q22	Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 12 (Arhgef12), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Larg	Larg
Rattus norvegicus	RefSeq	GI_62646607-S	ILMN_49767	LOC362295	XM_342608.2	XM_342608.2		362295	62646607	XM_342608.2	LOC362295	XP_342609.2	ILMN_1358163	0001090577	S	1685	GGCTCCATGTAGCCCGTCAGTGTCTTCCTCAGGACTCTACTACATCCTCC				4q11	PREDICTED: Rattus norvegicus similar to Lmbr1 protein (LOC362295), mRNA.					
Rattus norvegicus	RefSeq	GI_47577856-S	ILMN_277650	OLR1195	NM_001001081.1	NM_001001081.1		405971	47577856	NM_001001081.1	Olr1195	NP_001001081.1	ILMN_1350591	0001190215	S	866	ACAGCCTGAGGAACAAGGAAGTGAAGGCTGCACTGGACAAAACACTGAGG	8	-	39001229-39001278	8q21	Rattus norvegicus olfactory receptor 1195 (Olr1195), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1195	Olr1195
Rattus norvegicus	RefSeq	GI_22779852-S	ILMN_62289	HOMEZ	NM_152849.2	NM_152849.2		260325	78214358	NM_152849.2	Homez	NP_690062.2	ILMN_1361250	0003120441	S	1454	AGCACTCAGCAAGTGCTGGACTGGTTTGACTCTCGATTGCCCAAGCCAGC	15	-	32949884-32949933	15p13	Rattus norvegicus homeobox and leucine zipper encoding (Homez), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC93137; MGC105306	MGC93137; MGC105306
Rattus norvegicus	RefSeq	GI_62649425-S	ILMN_283279	SLC5A9_PREDICTED	XM_001063922.1	XM_001063922.1		366441	109476931	XM_001063922.1	Slc5a9_predicted	XP_001063922.1	ILMN_1350783	0006350292	S	944	TGGTGTTGGTGCACGGACCAGGTGATTGTGCAGAGGTCTCTCTCGGCCAA				5q35	PREDICTED: Rattus norvegicus solute carrier family 5 (sodium/glucose cotransporter), member 9 (predicted) (Slc5a9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656047-S	ILMN_277369	LOC287274	XR_009606.1	XR_009606.1		287274	109490666	XR_009606.1	LOC287274		ILMN_1357279	0002350315	S	634	GCTCAGAAGTGTATGTGTTGTACTCCTCGGTAAAATAGCCTGGCAAGCTC				10q22	PREDICTED: Rattus norvegicus sedlin-like (LOC287274), misc RNA.					
Rattus norvegicus	RefSeq	GI_62648374-S	ILMN_65593	PHC1_PREDICTED	XM_232336.4	XM_232336.4		312690	109472588	XM_232336.4	Phc1_predicted	XP_232336.4	ILMN_1363064	0001940017	S	3467	GCCAAGAGATTGCAGAAGAGTTTCGTTCCCAGGAGATTGATGGACAGGCC	4	-	158737575-158737624	4q42	PREDICTED: Rattus norvegicus polyhomeotic-like 1 (Drosophila) (predicted) (Phc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079016-S	ILMN_288194	CDYL	NM_001014145.1	NM_001014145.1		361237	62079016	NM_001014145.1	Cdyl	NP_001014167.1	ILMN_1364833	0004230068	S	2031	TTCTGATTGGCAGGCTGAGCAGGACACCAGCGACTCCCACTTGCTACGGT	17	-	35290357-35290401:35290402-35290406	17p12	Rattus norvegicus chromodomain protein, Y chromosome-like (Cdyl), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663200	ILMN_275932	RGD1566359_PREDICTED	XM_001069011.1	XM_001069011.1		498701	109505458	XM_001069011.1	RGD1566359_predicted	XP_001069011.1	ILMN_1650218	0002900341	S	700	GGCAGGCCTCCAGGTAGCATTAAAGCTCTGTCCCGTCTTGCAGATCTTGG				17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230219D22 (predicted) (RGD1566359_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865517-A	ILMN_288900	ALDH1B1	NM_001011975.1	NM_001011975.1		298079	58865517	NM_001011975.1	Aldh1b1	NP_001011975.1	ILMN_1376566	0003120524	S	2012	GGGGAATAAGGGAACAACTGCTTGCAGATATGGGGCTCCTCTTGGGGAGG	5	+	62316091-62316140	5q22	Rattus norvegicus aldehyde dehydrogenase 1 family, member B1 (Aldh1b1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61098030-S	ILMN_290738	APOB	NM_019287.1	NM_019287.1		54225	61098030	NM_019287.1	Apob	NP_062160.1	ILMN_1360779	0006980215	S	13587	TCTCCATCTGCCCACCATGCTTCCGGAAACTCAGGGACTTCGCTGGCAAA	6	+	31555651-31555669:31555930-31555960	6q14	Rattus norvegicus apolipoprotein B (Apob), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IDA]; The lipid bilayer surrounding a clathrin-coated endocytic vesicle [goid 30669] [evidence ISS]; The volume enclosed by the membrane of an endosome [goid 31904] [evidence ISS]; The volume enclosed by the membrane or protein that forms a vesicle [goid 31983] [evidence IDA]; A chylomicron that contains apolipoprotein C2 (APOC2), a cofactor for lipoprotein lipase (LPL) activity, and has a mean diameter of 500 nm and density of 0.95g/ml. Mature chylomicron particles transport exogenous (dietary) lipids from the intestines to other body tissues, via the blood and lymph [goid 34359] [evidence ISS]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence ISS]; A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triacylglycerol and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver [goid 34362] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The release of triacylglycerols, any triester of glycerol, from storage within cells or tissues, making them available for metabolism [goid 6642] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus [goid 9743] [evidence IDA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion [goid 10269] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence IMP]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL [goid 34374] [evidence ISS]; The process by which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded [goid 34383] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42159] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45540] [evidence ISS]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IMP]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]	Aa1064; Ac1-060	Aa1064; Ac1-060
Rattus norvegicus	RefSeq	GI_16758295-S	ILMN_267697	VAMP7	NM_053531.1	NM_053531.1		85491	16758295	NM_053531.1	Vamp7	NP_445983.1	ILMN_1352570	0003290075	S	353	CCGAGAATCAGAGCCTGGACAGAGTGACGGAGACTCAAGCCCAAGTGGAC	12	-	17262486-17262535	12q11	Rattus norvegicus vesicle-associated membrane protein 7 (Vamp7), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence ISS]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence ISS]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IDA]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence IDA]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence ISS]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence IDA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence IDA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence IDA]; The regulated exocytosis of secretory granules containing preformed mediators such as major basic protein, eosinophil peroxidase, and eosinophil cationic protein by an eosinophil [goid 43308] [evidence IDA]; The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil [goid 43312] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Vamp7	Vamp7
Rattus norvegicus	RefSeq	GI_62652382-S	ILMN_66420	LOC503147	XM_578668.1	XM_578668.1		503147	62652382	XM_578668.1	LOC503147	XP_578668.1	ILMN_1361222	0004850152	S	344	GAGGCGGTACCTGACCAAGATCCTTATGGAATTACGACTCCGCAGACCTG					PREDICTED: Rattus norvegicus similar to FLJ45949 protein (LOC503147), mRNA.					
Rattus norvegicus	RefSeq	GI_62644511-S	ILMN_282130	CLCA2	XM_001079170.1	XM_001079170.1		362052	109467750	XM_001079170.1	Clca2	XP_001079170.1	ILMN_1363177	0000670398	S	2505	GATCTACATTGCAATTCTGGCCAACAATGAAGCCGGTCTCACCTCCAAGG				2q44	PREDICTED: Rattus norvegicus chloride channel calcium activated 2 (Clca2), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62650835-S	ILMN_56948	LOC500675	XM_576053.1	XM_576053.1		500675	62650835	XM_576053.1	LOC500675	XP_576053.1	ILMN_1351545	0007100195	S	1348	CGAGAGGACACAGAGAGTGTGTCAAAATTAACAAAATCAGAAATGGGGAG					PREDICTED: Rattus norvegicus similar to LRRGT00108 (LOC500675), mRNA.					
Rattus norvegicus	RefSeq	GI_62649728	ILMN_299015	LOC684447	XR_008706.1	XR_008706.1		684447	109522050	XR_008706.1	LOC684447		ILMN_1650917	0005390408	S	577	CGAGGGAAGAACCCTCCTCCAGAGTTCGCAAAGGTCTCTCCTTGTTTGCC					PREDICTED: Rattus norvegicus similar to karyopherin (importin) alpha 6 (predicted) (LOC684447), mRNA.					
Rattus norvegicus	RefSeq	GI_62643249-S	ILMN_61504	RGD1559963_PREDICTED	XM_227018.3	XM_227018.3		310284	109464659	XM_227018.3	RGD1559963_predicted	XP_227018.1	ILMN_1351080	0007050504	S	282	CTTCCGTTACAAGAAGAGGTCTGTGCATGCTCATGTCCCTGTCAACGTCA	2	-	106814789-106814838	2q24	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (predicted) (RGD1559963_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664162-S	ILMN_67879	WDR33_PREDICTED	XM_226076.4	XM_226076.4		307524	109506388	XM_226076.4	Wdr33_predicted	XP_226076.2	ILMN_1358268	0000450193	S	4644	GCGTGCTTACTACTGGCACTTCCGACAGACGGTCACTTGTCAACTCCGCT	18	+	24328989-24329038	18p12	PREDICTED: Rattus norvegicus WD repeat domain 33 (predicted) (Wdr33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641746-S	ILMN_56380	LOC309162	XM_219511.3	XM_219511.3		309162	62641746	XM_219511.3	LOC309162	XP_219511.3	ILMN_1349941	0005890193	S	1746	ACTGTGCCGCTGGCAGAAGGGACTCAAGTCTTTCCAGTTCTCCTGGTCTC					PREDICTED: Rattus norvegicus similar to retinitis pigmentosa GTPase regulator-like protein (LOC309162), mRNA.					
Rattus norvegicus	RefSeq	GI_19424179-S	ILMN_287778	MOBKL3	NM_133528.1	NM_133528.1		171050	19424179	NM_133528.1	Mobkl3	NP_598212.1	ILMN_1365486	0002480600	S	2380	CTCAGTGAGCAGTTAAGGCAGGTGGAGACCTGACTGAGTACTTGGAACAC	9	+	53946630-53946679	9q31	Rattus norvegicus MOB1, Mps One Binder kinase activator-like 3 (yeast) (Mobkl3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	phocein	phocein
Rattus norvegicus	RefSeq	GI_47576574-S	ILMN_301790	OLR1653	NM_001000104.1	NM_001000104.1		290957	47576574	NM_001000104.1	Olr1653	NP_001000104.1	ILMN_1354858	0006130026	S	819	CGTCTTTATGTCAGTGTTCTACTCTCTGTTACCCCCCAGCCTGAATCCTG	17	-	5519430-5519479	17p14	Rattus norvegicus olfactory receptor 1653 (Olr1653), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr17-5520298-5519351_ORF; Olr1653	ratchr17-5520298-5519351_ORF; Olr1653
Rattus norvegicus	RefSeq	GI_62657993-S	ILMN_65260	LOC498092	XM_579782.1	XM_579782.1		498092	62657993	XM_579782.1	LOC498092	XP_579782.1	ILMN_1371955	0003120369	S	545	GTCATCCAGCCCATAGAGTTGTCAGATCCCAAGTGTGAGGCAGGGGAGCC					PREDICTED: Rattus norvegicus LOC498092 (LOC498092), mRNA.					
Rattus norvegicus	RefSeq	GI_8393940-S	ILMN_270229	PADI4	NM_017227.1	NM_017227.1		29512	8393940	NM_017227.1	Padi4	NP_058923.1	ILMN_1350936	0005360075	S	2062	TGCAGGGAGATACAGTGAGAGATCTGGGGCCTTGGGGCTTCCCTAGAGGT	5	-	159580864-159580913	5q36	Rattus norvegicus peptidyl arginine deiminase, type IV (Padi4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The hydrolysis of peptidyl-arginine to form peptidyl-citrulline [goid 18101] [evidence IEA]	Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IDA]; Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pdi4	Pdi4
Rattus norvegicus	RefSeq	GI_62662716-S	ILMN_275434	DLC1	XM_001066332.1	XM_001066332.1		58834	109504285	XM_001066332.1	Dlc1	XP_001066332.1	ILMN_1360349	0002320193	S	4355	CCAGGGGAGCCTGTGCTCTCTTATTCACCTCTGTGGATCACGACCGGGCA				16q12.2	PREDICTED: Rattus norvegicus deleted in liver cancer 1 (Dlc1), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence NAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IMP]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence NAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IDA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence NAS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; The process by which the anatomical structure of the hindbrain is generated and organized. Morphogenesis pertains to the creation of form. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions [goid 21575] [evidence ISS]; The process by which the anatomical structure of the hindbrain is generated and organized. Morphogenesis pertains to the creation of form. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions [goid 21575] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 32956] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Rho protein signal transduction [goid 35024] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein [goid 35307] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the assembly a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51497] [evidence ISS]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence IPI]; Increases the rate of GTP hydrolysis by a GTPase of the Rac family [goid 30675] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657573-S	ILMN_56776	LOC498046	XM_579773.1	XM_579773.1		498046	62657573	XM_579773.1	LOC498046	XP_579773.1	ILMN_1349934	0003850471	S	133	ACCATCCGTATCCATAGGTTCACCACCTCTGTGGGCCGTCGCAGCCACTA					PREDICTED: Rattus norvegicus LOC498046 (LOC498046), mRNA.					
Rattus norvegicus	RefSeq	GI_62649201-S	ILMN_264739	RGD1564637_PREDICTED	XM_001054291.1	XM_001054291.1		502963	109476720	XM_001054291.1	RGD1564637_predicted	XP_001054291.1	ILMN_1364799	0004760019	S	78	GCCTCGCACTCATAACCTCACACTCCTGGAAAACATGGGTAGATACTCCC				5q32	PREDICTED: Rattus norvegicus similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) (predicted) (RGD1564637_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.3886	ILMN_161612	RN.3886	Rn.3886		Rn.3886		24994711	CA503757			ILMN_1530205	0000050408	S	174	TAAACCACTACTTTAACGAACAGATGTAAAATCACACTAAAATGGGAAGT					UI-R-FJ0-cpu-f-10-0-UI.s1 UI-R-FJ0 Rattus norvegicus cDNA clone UI-R-FJ0-cpu-f-10-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_16758925-S	ILMN_296691	HSD17B3	NM_054007.1	NM_054007.1		117182	16758925	NM_054007.1	Hsd17b3	NP_446459.1	ILMN_1369450	0006510332	S	932	GCAACAGATAGTGGGGAAAGGGAGTGGGGGTGGGTAGAGTTAGGGTTGGG	17	+	6585346-6585356:6585357-6585395	17p14	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 3 (Hsd17b3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NADP+ + testosterone = NADPH + H+ + androst-4-ene-3,17-dione [goid 47045] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666402-S	ILMN_270572	STAG2_PREDICTED	XM_001059059.1	XM_001059059.1		313304	109512525	XM_001059059.1	Stag2_predicted	XP_001059059.1	ILMN_1357819	0006660333	S	2841	GATGATCTTCAGTCACCAGATTATGTCTGGAGGGCGTGACATGTTAGAGC				Xq11	PREDICTED: Rattus norvegicus stromal antigen 2 (predicted) (Stag2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665797-S	ILMN_66548	RGD1565879_PREDICTED	XM_574729.2	XM_574729.2		499413	109509276	XM_574729.2	RGD1565879_predicted	XP_574729.2	ILMN_1358132	0005700402	S	894	TCCAGATGCAGAAGTGTGCCTTCATGCCGTGCGGCTCATCCAGTCTGTGG	20	-	10368843-10368892	20p12	PREDICTED: Rattus norvegicus similar to heat shock transcription factor 2 binding protein (predicted) (RGD1565879_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665087	ILMN_276942	SLC10A7	NM_001010948.1	NM_001010948.1		291942	58219499	NM_001010948.1	Slc10a7	NP_001010948.1	ILMN_1650893	0003710161	S	969	GTCTTGGATGGTGTCGAGGCAGAAGGGAGTGAAGCTGACGAGGCCAACAG				19q11	Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter family), member 7 (Slc10a7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Slc10a7	Slc10a7
Rattus norvegicus	RefSeq	GI_47577792-S	ILMN_264298	OLR1235	NM_001000447.1	NM_001000447.1		300560	47577792	NM_001000447.1	Olr1235	NP_001000447.1	ILMN_1356292	0003060494	S	32	AGTTTGTCCTTGCTGGCTTAACAGATTGTCCAGAGCTCCAGCTGCCTCTC	8	+	40555597-40555646	8q22	Rattus norvegicus olfactory receptor 1235 (Olr1235), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-40564332-40565273_ORF; Olr1235	ratchr8-40564332-40565273_ORF; Olr1235
Rattus norvegicus	RefSeq	GI_51948495-S	ILMN_266563	SLC22A18	XM_001065221.1	XM_001065221.1		309131	109463243	XM_001065221.1	Slc22a18	XP_001065221.1	ILMN_1354917	0000510408	S	1097	GTTGTGGGCCTGGGCATGGCACTGATGTCCAATGTGTTCCACTTCTGCCT				1q41	PREDICTED: Rattus norvegicus solute carrier family 22 (organic cation transporter), member 18, transcript variant 2 (Slc22a18), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles) [goid 15904] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence IEA]; The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles) [goid 15904] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out) [goid 15520] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out) [goid 15520] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090402-S	ILMN_273058	MGC94199	NM_001007746.1	NM_001007746.1		362483	56090402	NM_001007746.1	MGC94199	NP_001007747.1	ILMN_1352934	0000430167	S	1775	CTGAAGGTTTCCTCCTAGGCTCGGGGTCTCGCTCAGCAATAGCGTGTGCA	5	+	24758504-24758553	5q13	Rattus norvegicus similar to RIKEN cDNA 2610301B20; EST AI428449 (MGC94199), mRNA.					
Rattus norvegicus	RefSeq	GI_62718075-S	ILMN_272682	LOC501285	XM_001061924.1	XM_001061924.1		501285	109486629	XM_001061924.1	LOC501285	XP_001061924.1	ILMN_1358433	0001660746	S	774	CACCTTCCCAACCACAGGCAGCTGCAAGACCCAACCCCACAGCCATTCTT					PREDICTED: Rattus norvegicus similar to CG8435-PA (LOC501285), mRNA.					
Rattus norvegicus	RefSeq	GI_62655775-S	ILMN_48028	LOC501678	XM_577075.1	XM_577075.1		501678	62655775	XM_577075.1	LOC501678	XP_577075.1	ILMN_1351219	0002230280	S	261	GGCCACAGCTCCCTCGGCCTTAACAGAAACCAAGCTCAGGAAGGAAAGCT					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (LOC501678), mRNA.					
Rattus norvegicus	RefSeq	GI_47576438	ILMN_291376	OLR1589	NM_001000083.1	NM_001000083.1		289251	47576438	NM_001000083.1	Olr1589	NP_001000083.1	ILMN_1649822	0002060142	S	889	ATCAAGGAGGCCCTGAAGAGGCAGCTGATGAGAACAGGGATGCTGGGGTG	13	+	89844729-89844778	13q24	Rattus norvegicus olfactory receptor 1589 (Olr1589), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1589	Olr1589
Rattus norvegicus	Unigene	Rn.2427	ILMN_161578	RN.2427	Rn.2427		Rn.2427		66912117	BC098064			ILMN_1530485	0002190142	S	3	TAACCTGGATGTCAAGTCACAGAGGTGTGCTGTGTGTATACTGGTGTACA					Rattus norvegicus cDNA clone MGC:116225 IMAGE:7458604, complete					
Rattus norvegicus	RefSeq	GI_62639460-S	ILMN_297745	RGD1561430_PREDICTED	XR_009290.1	XR_009290.1		365229	109461698	XR_009290.1	RGD1561430_predicted		ILMN_1361912	0003940528	S	631	GCCACAAGCCTACATTTCTGAGGATGAGGGAGCCTTCTTTGGGGGAAAGG				1q21	PREDICTED: Rattus norvegicus similar to ABO histo-blood group B transferase (predicted) (RGD1561430_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638473-S	ILMN_274397	RGD1305235	NM_001017447.1	NM_001017447.1		292267	62945249	NM_001017447.1	RGD1305235	NP_001017447.1	ILMN_1349387	0002370441	S	1811	CATGCCTTGTAAGAGCTCTCCCAGGAGGCGTGTGCATGATGCTTGAACAC	1	+	35168545-35168594	1p11	Rattus norvegicus similar to RIKEN cDNA 1700052N19 (RGD1305235), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663542-S	ILMN_264969	RGD1562878_PREDICTED	XM_001068854.1	XM_001068854.1		502122	109505735	XM_001068854.1	RGD1562878_predicted	XP_001068854.1	ILMN_1372297	0001690609	S	513	GCTTCAGAATGGAGATGAAGAAAGGAACTATCCTGCCTGGTCCAGCCTGC				17p11	PREDICTED: Rattus norvegicus similar to OTTMUSP00000000600 (predicted) (RGD1562878_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665810-S	ILMN_67190	LOC499415	XM_574731.1	XM_574731.1		499415	62665810	XM_574731.1	LOC499415	XP_574731.1	ILMN_1360372	0004230341	S	1306	ATGGGGGAGGTTCTTGGTTTCTGAAGGTGGGGACAGAGATTGCCGCTCGG				20p12	PREDICTED: Rattus norvegicus similar to B7-like protein GL50-B (LOC499415), mRNA.					
Rattus norvegicus	RefSeq	GI_62657783-S	ILMN_48126	RGD1310935_PREDICTED	XM_340978.3	XM_340978.3		360707	109493058	XM_340978.3	RGD1310935_predicted	XP_340979.3	ILMN_1372252	0006200348	S	626	CCATGCTACAGGGGGCTTGTTTCTTGCAGATTGGTTTTGTCCTGTATCCC	11	+	44445325-44445353:44450678-44450698	11q12	PREDICTED: Rattus norvegicus similar to Dermal papilla derived protein 7 (predicted) (RGD1310935_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655626-S	ILMN_63388	LOC287036	XM_237751.2	XM_237751.2		287036	62655626	XM_237751.2	LOC287036	XP_237751.1	ILMN_1357261	0001410100	S	211	CGATAGGCGGAACCCGAGGTGGTCACACGGAAAGGGGTGAGCGACCGCAA					PREDICTED: Rattus norvegicus hypothetical LOC287036 (LOC287036), mRNA.					
Rattus norvegicus	RefSeq	GI_8393318	ILMN_67815	EPOR	NM_017002.2	NM_017002.2		24336	59709454	NM_017002.2	Epor	NP_058698.2	ILMN_1649929	0003520093	S	1238	GGGCCTGGGGACAGTGTAGACCCTGCGACTATGGATGAAGGTTCAGAAAC	8	-	21061790-21061839	8q13	Rattus norvegicus erythropoietin receptor (Epor), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]	Combining with erythropoietin to initiate a change in cell activity [goid 4900] [evidence IDA]; Combining with erythropoietin to initiate a change in cell activity [goid 4900] [evidence IEA]; Combining with erythropoietin to initiate a change in cell activity [goid 4900] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with erythropoietin to initiate a change in cell activity [goid 4900] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with erythropoietin to initiate a change in cell activity [goid 4900] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with erythropoietin to initiate a change in cell activity [goid 4900] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108723	MGC108723
Rattus norvegicus	RefSeq	GI_40786435-S	ILMN_276774	EIF4A1	NM_199372.1	NM_199372.1		287436	40786435	NM_199372.1	Eif4a1	NP_955404.1	ILMN_1373201	0001770541	S	1547	CCCCAGCCAAATCTCCAAAAGTGAGTCAAGGGGCTAAAACATGGCTGGCC	10	-	56484403-56484452	10q24	Rattus norvegicus eukaryotic translation initiation factor 4A1 (Eif4a1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653979-S	ILMN_57042	LOC503210	XM_578735.1	XM_578735.1		503210	62653979	XM_578735.1	LOC503210	XP_578735.1	ILMN_1359144	0006020092	S	604	GACTTTCCGACAGCCACCGCCAACTGCCTCCGCGTCCACACAGTAAATAC					PREDICTED: Rattus norvegicus similar to Senp8_predicted protein (LOC503210), mRNA.					
Rattus norvegicus	RefSeq	GI_18677752-S	ILMN_264884	SAMSN1	NM_130821.1	NM_130821.1		170637	18677752	NM_130821.1	Samsn1	NP_570834.1	ILMN_1359143	0006040095	S	898	GAGTCTCCTGGATGAAGAAACTGCCGCGGAGCATGAAGAGGAACCTGTGC	11	-	14633665-14633693:14644865-14644885	11p11	Rattus norvegicus SAM domain, SH3 domain and nuclear localization signals, 1 (Samsn1), mRNA.			Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence ISS]	Nash	Nash
Rattus norvegicus	RefSeq	GI_62652559-S	ILMN_296882	RGD1560926_PREDICTED	XR_008825.1	XR_008825.1		362929	109482373	XR_008825.1	RGD1560926_predicted		ILMN_1364269	0005050154	S	692	GACTGTGAATGACCCCTCTGGAAAGTTGTGGCCTGATGGCTATGGGGCAA				7q34	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1560926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666024-S	ILMN_277251	PTK9L_PREDICTED	XM_001060043.1	XM_001060043.1		294420	109510171	XM_001060043.1	Ptk9l_predicted	XP_001060043.1	ILMN_1360555	0002480446	S	715	ACCTGGAGCGGGAGACCATCGAGCTGGTACACGCAGAACCCACAAATGTG				20q11	PREDICTED: Rattus norvegicus protein tyrosine kinase 9-like (A6-related protein) (predicted) (Ptk9l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667005-S	ILMN_61029	LOC302436	XM_228600.3	XM_228600.3		302436	62667005	XM_228600.3	LOC302436	XP_228600.3	ILMN_1364615	0005900132	S	129	GGCTTCGACTCACTGCATCTGTTCTGGCATGTTCAATTGCCAAGTAGGGC					PREDICTED: Rattus norvegicus similar to heat shock protein 1 (chaperonin) (LOC302436), mRNA.					
Rattus norvegicus	RefSeq	GI_62663578-S	ILMN_57522	HIST1H4A_PREDICTED	XM_344595.2	XM_344595.2		364716	62663578	XM_344595.2	Hist1h4a_predicted	XP_344596.2	ILMN_1368905	0006980017	S	378	GCTGGCCCGCCGCATTCGTGGCGAGAGGGCTTAAATTGTCTTGTGAATCT					PREDICTED: Rattus norvegicus histone 1, H4a (predicted) (Hist1h4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651945-S	ILMN_67500	RGD1560291_PREDICTED	XM_234957.4	XM_234957.4		299656	109480333	XM_234957.4	RGD1560291_predicted	XP_234957.4	ILMN_1351785	0006380288	S	2752	CTGGGTAGGGTCAACCTGTGTGGGAATGCCTTTGAAATTAGTGGATTGGC	7	-	15085658-15085707	7q11	PREDICTED: Rattus norvegicus similar to NACHT, leucine rich repeat and PYD containing 4A (predicted) (RGD1560291_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786171-S	ILMN_300441	CAMKK2	NM_031338.1	NM_031338.1		83506	13786171	NM_031338.1	Camkk2	NP_112628.1	ILMN_1370123	0002350278	S	1778	GAGGAAGTGCTCTTGTGAAAGGTGGTCCCTGCGTGGAAAGTTGCGGGGCT	12	+	34938194-34938240:34938241-34938243	12q16	Rattus norvegicus calcium/calmodulin-dependent protein kinase kinase 2, beta (Camkk2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62639764	ILMN_294050	KDELR1	NM_001017385.1	NM_001017385.1		361577	62821822	NM_001017385.1	Kdelr1	NP_001017385.1	ILMN_1650728	0000580471	S	1298	AAATAAGGGGACGCTATGGGCTTAGGCAAGGGAAAGAGGTTGGCTGACCC	1	+	96359139-96359188	1q22	Rattus norvegicus KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 (Kdelr1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER [goid 6621] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER [goid 46923] [evidence IEA]	MGC109169	MGC109169
Rattus norvegicus	RefSeq	GI_62653272-S	ILMN_264765	CHORDC1_PREDICTED	XM_001075005.1	XM_001075005.1		315447	109484276	XM_001075005.1	Chordc1_predicted	XP_001075005.1	ILMN_1367875	0006550050	S	1965	GGTGTGTGTTGAGGCTTGAATCTGAAATGTACCTGGAGGCTTGTTTTGAG				8q12	PREDICTED: Rattus norvegicus cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 (predicted) (Chordc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667269-S	ILMN_53255	LOC501622	XM_577022.1	XM_577022.1		501622	62667269	XM_577022.1	LOC501622	XP_577022.1	ILMN_1374206	0000070450	S	3	ACGACCCTGAAGATCTGCATCATTGGCAAGAGCGGCCTGGGCAAGTCCAG					PREDICTED: Rattus norvegicus similar to Ras-related protein Rab-18 (LOC501622), mRNA.					
Rattus norvegicus	RefSeq	GI_62642558-S	ILMN_70187	SFXN4_PREDICTED	XM_342072.3	XM_342072.3		361778	109460296	XM_342072.3	Sfxn4_predicted	XP_342073.2	ILMN_1370040	0006200519	S	504	GGACCAGTAGAGAGAACGTTGTTGGGAGCAGGGGTGTTTGCGTCTTCAAC	1	-	267458133-267458182	1q55	PREDICTED: Rattus norvegicus sideroflexin 4 (predicted) (Sfxn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881030-S	ILMN_290271	RGD1564055_PREDICTED	XM_001059661.1	XM_001059661.1		364059	109499114	XM_001059661.1	RGD1564055_predicted	XP_001059661.1	ILMN_1363166	0004480403	S	222	CAAGCACGTCAGCAGGACCTATGGTGACTCCACGTGTGCCGTGTGTCCAT				13q25	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L34 (predicted) (RGD1564055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718696-S	ILMN_54440	LOC363411	XM_343737.2	XM_343737.2		363411	62718696	XM_343737.2	LOC363411	XP_343738.1	ILMN_1365927	0006100672	S	499	GCTGTGTGCCTCTCGGTTTCTCTCGTTGGCACAAAAATTACACGAGTAGC					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC363411), mRNA.					
Rattus norvegicus	RefSeq	GI_61740628-S	ILMN_278959	CHCHD4	NM_001013431.1	NM_001013431.1		312559	61740628	NM_001013431.1	Chchd4	NP_001013449.1	ILMN_1350912	0001050086	S	1017	TACTGGAAGAGGCTGGTGGTCAGGTACTGGAGCTGGAGGATGAGGCTGCT	4	-	125647545-125647594	4q34	Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain containing 4 (Chchd4), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]		MGC109542	MGC109542
Rattus norvegicus	RefSeq	GI_13928697-S	ILMN_284143	KRAS	NM_031515.1	NM_031515.1		24525	13928697	NM_031515.1	Kras	NP_113703.1	ILMN_1373027	0001450193	S	365	CTAGAACAGTAGACACGAAACAGGCTCAGGAGTTAGCAAGGAGTTATGGG	4	-	182881203-182881252	4q44	Rattus norvegicus v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (Kras), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 8316835] [evidence EXP]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IEA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence ISS]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of Rac protein signal transduction [goid 35022] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Rac protein signal transduction [goid 35022] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; Any process that activates or increases the activity of the enzyme nitric-oxide synthase [goid 51000] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance [goid 51385] [evidence IEP]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IEA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of Rac protein signal transduction [goid 35022] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence IEA]	Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GMP, guanosine monophosphate [goid 19002] [evidence IDA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with a LRR domain (leucine rich repeats) of a protein [goid 30275] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	c-Ki-ras; p21; Kras2	c-Ki-ras; p21; Kras2
Rattus norvegicus	RefSeq	GI_62654352-S	ILMN_52891	RGD1563705_PREDICTED	XM_576474.2	XM_576474.2		501058	109483980	XM_576474.2	RGD1563705_predicted	XP_576474.1	ILMN_1357175	0004760040	S	6	TTTCTCTCCGGCCCGTGGCGCCAGCAAGATGGGTAAGTGTCGTGGTCTCT	8	-	114666629-114666651:114666652-114666678	8q32	PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (predicted) (RGD1563705_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392877-S	ILMN_302242	AHCY	NM_017201.1	NM_017201.1		29443	8392877	NM_017201.1	Ahcy	NP_058897.1	ILMN_1357474	0005570494	S	1643	TAGATCCGTGTGCTTGGTTTACAGACCAATGGTTTCTCGGCCCAGGACCC	3	-	145545170-145545219	3q42	Rattus norvegicus S-adenosylhomocysteine hydrolase (Ahcy), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual [goid 2439] [evidence IMP]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of S-adenosylhomocysteine, forming homocysteine and then methionine [goid 19510] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of S-adenosylhomocysteine, forming homocysteine and then methionine [goid 19510] [evidence ISS]; The cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm [goid 42745] [evidence IDA]	Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine [goid 4013] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine [goid 4013] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine [goid 4013] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with adenyl nucleotides, any compound consisting of adenosine esterified with (ortho)phosphate [goid 30554] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_47577642-S	ILMN_292026	OLR650	NM_001000639.1	NM_001000639.1		404832	47577642	NM_001000639.1	Olr650	NP_001000639.1	ILMN_1363526	0006350092	S	574	GTGAGCAACCTTCTCATGGTGTCCAATAGTGGATCGCTTTGTACAGTGAG	3	-	72715042-72715091	3q24	Rattus norvegicus olfactory receptor 650 (Olr650), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr650	Olr650
Rattus norvegicus	RefSeq	GI_62666647-S	ILMN_262585	RGD1563434_PREDICTED	XM_001060658.1	XM_001060658.1		317391	109511563	XM_001060658.1	RGD1563434_predicted	XP_001060658.1	ILMN_1355781	0003850315	S	4349	GCAGATGCCAAAGAGCTGAAGGAGCATGTGGACCGCAGGGAGAAGCTGGT				Xq13	PREDICTED: Rattus norvegicus similar to mKIAA1202 protein (predicted) (RGD1563434_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11024677-S	ILMN_302875	DBIL5	NM_021596.1	NM_021596.1		59116	11024677	NM_021596.1	Dbil5	NP_067607.1	ILMN_1355624	0007050717	S	458	GTAGCATGGCTCCACTGGTAGGGGATGGGCTTAAGAGTTCCTGACGGCTG	10	+	63572209-63572258	10q24	Rattus norvegicus diazepam binding inhibitor-like 5 (Dbil5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Elp	Elp
Rattus norvegicus	RefSeq	GI_62665935-S	ILMN_284184	LOC690777	XM_001072800.1	XM_001072800.1		690777	109509386	XM_001072800.1	LOC690777	XP_001072800.1	ILMN_1349402	0002760053	S	1873	AGAGATGCTCCTCTACTGTGCCGTGACATAGGAACTCAATGCTCCTGCAC	20	+	25350107-25350132:25350133-25350156	20p11	PREDICTED: Rattus norvegicus similar to RUN and FYVE domain-containing 2 (LOC690777), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658686-S	ILMN_63146	LOC501826	XM_577238.1	XM_577238.1		501826	62658686	XM_577238.1	LOC501826	XP_577238.1	ILMN_1373261	0001690315	S	706	ACTCAATATTACACATGGTTTTCTCTGTGGCAGCACAGTCCATTGACCCC					PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (LOC501826), mRNA.					
Rattus norvegicus	RefSeq	GI_31543038-S	ILMN_296849	KCNN3	NM_019315.2	NM_019315.2		54263	31543038	NM_019315.2	Kcnn3	NP_062188.2	ILMN_1364332	0004230181	S	2226	CACGGAGCTCAACGACCGGAGTGAAGACCTGGAAAAGCAGATTGGCAGCC	2	+	181860179-181860228	2q34	Rattus norvegicus potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 (Kcnn3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IMP]; Catalysis of the transmembrane transfer of potassium by a channel with a unit conductance of 2 to 20 picoSiemens that opens in response to stimulus by internal calcium ions. Small conductance calcium-activated potassium channels are more sensitive to calcium than are large conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 16286] [evidence IMP]; Catalysis of the transmembrane transfer of potassium by a channel with a unit conductance of 2 to 20 picoSiemens that opens in response to stimulus by internal calcium ions. Small conductance calcium-activated potassium channels are more sensitive to calcium than are large conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 16286] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence TAS]	SK3	SK3
Rattus norvegicus	RefSeq	GI_62648024-S	ILMN_48706	LOC500291	XM_580055.1	XM_580055.1		500291	62648024	XM_580055.1	LOC500291	XP_580055.1	ILMN_1360316	0004850017	S	431	AGTTCAGGACTGTGTCAAGGTGGTGAGCGCCAGAATGAGCTAGCCTTCAG					PREDICTED: Rattus norvegicus LOC500291 (LOC500291), mRNA.					
Rattus norvegicus	RefSeq	GI_23463278-S	ILMN_295818	SFXN5	NM_153298.1	NM_153298.1		261737	23463278	NM_153298.1	Sfxn5	NP_695210.1	ILMN_1353083	0004670411	S	729	ATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATCGCAGCC	4	-	119476692-119476741	4q34	Rattus norvegicus sideroflexin 5 (Sfxn5), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The directed movement of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, into, out of, within or between cells [goid 15746] [evidence IDA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]; Catalysis of the transfer of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, from one side of the membrane to the other [goid 15137] [evidence IDA]	BBG-TCC	BBG-TCC
Rattus norvegicus	RefSeq	GI_13027449-S	ILMN_286812	SENP2	NM_023989.1	NM_023989.1		78973	13027449	NM_023989.1	Senp2	NP_076479.1	ILMN_1349569	0002190722	S	1759	GGGAAATCCTTCACCAGCAGTTGCTGTGACAATGCCCCGCCTGGTCTTCT				11q23	Rattus norvegicus SUMO/sentrin specific peptidase 2 (Senp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein [goid 16926] [evidence ISS]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Catalysis of the hydrolysis of SUMO, a small ubiquitin-related modifier, from previously sumoylated substrates [goid 16929] [evidence ISS]	Axam	Axam
Rattus norvegicus	RefSeq	GI_62651362-S	ILMN_59806	LOC500741	XM_234646.2	XM_234646.2		500741	62651362	XM_234646.2	LOC500741	XP_234646.1	ILMN_1352291	0006020021	S	397	TGTCCCTACAGGGATTCTTAGGACCAGCAGGGGGCAGTGAAGATCAATGA					PREDICTED: Rattus norvegicus similar to Igh-1a_predicted protein (LOC500741), mRNA.					
Rattus norvegicus	RefSeq	GI_62663290-S	ILMN_286477	LOC682571	XM_001062077.1	XM_001062077.1		682571	109466443	XM_001062077.1	LOC682571	XP_001062077.1	ILMN_1365592	0004810577	S	1132	TGAAAGCTTAGATGTCCCTGCGAACCCACAATCTCCACCAGCAGAGCTGG					PREDICTED: Rattus norvegicus similar to spindlin (LOC682571), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62660284-S	ILMN_60922	LOC289522	XM_214011.3	XM_214011.3		289522	62660284	XM_214011.3	LOC289522	XP_214011.3	ILMN_1357661	0001450465	S	943	TCCACGGAGTTGGAGCAGACCTCACACTATGCTCTCAGAACGGGGACAGC				14p22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38991 (LOC289522), mRNA.					
Rattus norvegicus	RefSeq	GI_9506914-S	ILMN_64420	NEUROD1	NM_019218.2	NM_019218.2		29458	81295405	NM_019218.2	Neurod1	NP_062091.1	ILMN_1363838	0005900593	S	1192	CGAATCCACTGTGCTTACAGTGACTGTCCTGTTTACAGAAGGCAGCCCTT	3	-	62225212-62225261	3q24	Rattus norvegicus neurogenic differentiation 1 (Neurod1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650678-S	ILMN_48872	NPAS3_PREDICTED	XM_234124.4	XM_234124.4		299016	109478214	XM_234124.4	Npas3_predicted	XP_234124.4	ILMN_1359667	0004570025	S	2785	GCGGGCCCCACTCAGGAGGCATCGTCGTTTTCGTTTAGACCTTTCATTCT	6	+	74325463-74325512	6q23	PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (predicted) (Npas3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577566-S	ILMN_298136	OLR666	NM_001000924.1	NM_001000924.1		405242	47577566	NM_001000924.1	Olr666	NP_001000924.1	ILMN_1356694	0003840039	S	291	GACACAGGTCTTTGCTGTGCACTTTCTTAGTGCGGTGGAGGTCACTGTCC	3	-	73126490-73126539	3q24	Rattus norvegicus olfactory receptor 666 (Olr666), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr666	Olr666
Rattus norvegicus	RefSeq	GI_62658481-S	ILMN_269928	RGD1565044_PREDICTED	XR_008827.1	XR_008827.1		498147	109496620	XR_008827.1	RGD1565044_predicted		ILMN_1350052	0001090021	S	550	TCTGGGTGTCCCGGGAGGAGTATGAAGAGGTGTGTGTAGAGGGTGGGTGA				12p11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4933411G11 (predicted) (RGD1565044_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638650-S	ILMN_60136	RGD1560543_PREDICTED	XM_574327.2	XM_574327.2		499046	109457854	XM_574327.2	RGD1560543_predicted	XP_574327.1	ILMN_1358466	0001770348	S	641	TCTGACCAAGAGTGGTCCTGGCCATTGGGAAACCCCAGCAGAGGTGATGC	1	-	51331273-51331322	1q12	PREDICTED: Rattus norvegicus similar to Afadin (AF-6 protein) (predicted) (RGD1560543_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577720	ILMN_272042	OLR587	NM_001000659.1	NM_001000659.1		404859	47577720	NM_001000659.1	Olr587	NP_001000659.1	ILMN_1649831	0004780112	S	414	CAGGGTATGCTACCAATTCCTGGCTGGTGTTTACCTTGTAGGAATGACAG	3	-	71549539-71549588	3q24	Rattus norvegicus olfactory receptor 587 (Olr587), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr587	Olr587
Rattus norvegicus	RefSeq	GI_62646996-S	ILMN_268293	RGD1308226_PREDICTED	XM_001067183.1	XM_001067183.1		296968	109473329	XM_001067183.1	RGD1308226_predicted	XP_001067183.1	ILMN_1364137	0005050487	S	2420	CGGGTTCCAACACCAAACCCACCCTTCCTCCAATCCCACATGGCCGAAGA				4q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32786 (predicted) (RGD1308226_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641670-S	ILMN_269994	RGD1560414_PREDICTED	XM_001066322.1	XM_001066322.1		293642	109463287	XM_001066322.1	RGD1560414_predicted	XP_001066322.1	ILMN_1366505	0005670280	S	478	GGAGCCTGAGCTGCTGGAGCCCATTCCATAGGAATTCATGGCCTAATGTA				1q41	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1560414_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861779-S	ILMN_269994	RGD1560414_PREDICTED	XM_001066322.1	XM_001066322.1		293642	109463287	XM_001066322.1	RGD1560414_predicted	XP_001066322.1	ILMN_2039978	0006960286	S	471	ACGGAAAGGAGCCTGAGCTGCTGGAGCCCATTCCATAGGAATTCATGGCC				1q41	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1560414_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.87063	ILMN_160580	RN.87063	Rn.87063		Rn.87063		29489582	CB570052			ILMN_1530215	0001400546	S	695	CAATCAACCGGGCAAATGGGTGTAAAAACAGGTTAGTTGGGAACCGAAAA					AGENCOURT_12596704 NICHD_Rr_Pit1 Rattus norvegicus cDNA clone IMAGE:6917961 5', mRNA					
Rattus norvegicus	RefSeq	GI_62654967-S	ILMN_65433	LOC501130	XM_576550.1	XM_576550.1		501130	62654967	XM_576550.1	LOC501130	XP_576550.1	ILMN_1362992	0002690273	S	3613	CAGATATGTCGGTGTTTGTGGGTGCCGTGAACGAGCCAGATCTTCCCAGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501130), mRNA.					
Rattus norvegicus	RefSeq	GI_62664056-S	ILMN_53420	LOC502150	XM_577605.1	XM_577605.1		502150	62664056	XM_577605.1	LOC502150	XP_577605.1	ILMN_1354501	0006110309	S	1322	TTCCTCACACATCCTCAAGGGCCCGACACAGCTTTTTCCTCGCACGTCCG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502150), mRNA.					
Rattus norvegicus	RefSeq	GI_13592110-S	ILMN_273370	TGFBR2	NM_031132.1	NM_031132.1		81810	13592110	NM_031132.1	Tgfbr2	NP_112394.1	ILMN_1371159	0006620181	S	1742	GCCTGAAATCCCCAGCTTCTGGCTCAACCACCAGGGCATCCAGATCGTGT	8	-	120593882-120593898:120596226-120596258	8q32	Rattus norvegicus transforming growth factor, beta receptor II (Tgfbr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IMP]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]	The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEP]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence TAS]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of tolerance induction to self antigen [goid 2651] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of B cell tolerance induction [goid 2663] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of T cell tolerance induction [goid 2666] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IDA]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence TAS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS];  [goid 7182] [evidence IDA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEP]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence ISS]; Any process that activates or increase the rate of skeletal muscle regeneration [goid 43415] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process by which the anatomical structures of cranial skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48701] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation [goid 51138] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell proliferation [goid 60044] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA];  [goid 4702] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence ISS]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I activin receptor [goid 5026] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues [goid 5539] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]	TGF-beta 2	TGF-beta 2
Rattus norvegicus	RefSeq	GI_62648105-S	ILMN_52454	LOC500307	XM_575656.1	XM_575656.1		500307	62648105	XM_575656.1	LOC500307	XP_575656.1	ILMN_1371263	0001740037	S	2720	GGGTGAGCGCGTATTTCTACCTCTGTGCTTCCGTTTCCAGCGCATCGCAC				4q42	PREDICTED: Rattus norvegicus similar to cat eye syndrome critical region 6 (LOC500307), mRNA.					
Rattus norvegicus	RefSeq	GI_62643151-S	ILMN_274042	LOC361914	NM_001017465.1	NM_001017465.1		361914	62945285	NM_001017465.1	LOC361914	NP_001017465.1	ILMN_1355770	0006110433	S	1537	TTGTTGGGGCACCAGGGGAAGGGGAAGCGCTTGGTCCTACCAAGGTTGGA	2	-	88620361-88620410	2q23	Rattus norvegicus similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 (LOC361914), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641381-S	ILMN_284057	FGFR2	XM_001079521.1	XM_001079521.1		25022	109462959	XM_001079521.1	Fgfr2	XP_001079521.1	ILMN_1371701	0000840377	S	2676	ACAGGACAGCACCAGGAACCTACTTACACTGAGCAGAGAGGCTGTGCCCC				1q37	PREDICTED: Rattus norvegicus fibroblast growth factor receptor 2, transcript variant 9 (Fgfr2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence IDA]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence IEA]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence IEA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence IMP]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a mesoderm cell [goid 48333] [evidence IEP]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence IEA]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell [goid 48762] [evidence ISS]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence IEA]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation [goid 60045] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with fibroblast growth factor to initiate a change in cell activity [goid 5007] [evidence IPI]; Combining with fibroblast growth factor to initiate a change in cell activity [goid 5007] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with fibroblast growth factor [goid 17134] [evidence IPI]; Interacting selectively with fibroblast growth factor [goid 17134] [evidence IPI]; Interacting selectively with fibroblast growth factor 1 [goid 48602] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664788	ILMN_61827	LOC498905	XM_574194.1	XM_574194.1		498905	62664788	XM_574194.1	LOC498905	XP_574194.1	ILMN_1650194	0006860026	S	136	TACCTGGGAAACCAGAAGAGACTGCACTCTGCACACCATACTGATTCGAG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498905), mRNA.					
Rattus norvegicus	RefSeq	GI_62647700-S	ILMN_56205	LOC500233	XM_575583.1	XM_575583.1		500233	62647700	XM_575583.1	LOC500233	XP_575583.1	ILMN_1349236	0006520019	S	1817	AGGGGCAAGTATGCACCCCGATGTTCGTTTGGGCGGTGAACCTGCTGACA				4q34	PREDICTED: Rattus norvegicus similar to Exocyst complex component Sec15B (LOC500233), mRNA.					
Rattus norvegicus	RefSeq	GI_16758493-S	ILMN_263168	ANKH	NM_053714.1	NM_053714.1		114506	16758493	NM_053714.1	Ankh	NP_446166.1	ILMN_1354148	0000520369	S	2193	GCTCCCCAATAATGTGGCTCTAAGACACGTGACCCGGTGGCCATCACACC	2	+	79418265-79418314	2q22	Rattus norvegicus ankylosis, progressive homolog (mouse) (Ankh), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites [goid 19867] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence TAS]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence TAS]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence TAS]; Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence IEA]; Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence ISS]; Catalysis of the transfer of phosphate (PO4 3-) ions from one side of a membrane to the other [goid 15114] [evidence IEA]; Catalysis of the transfer of inorganic diphosphate across a membrane [goid 30504] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948477-S	ILMN_265522	FARSB	NM_001004252.1	NM_001004252.1		301544	51948477	NM_001004252.1	Farsb	NP_001004252.1	ILMN_1356564	0006620408	S	1914	GCGCAGCGGCAGTAGGCCAGCTTGTGGAAGAGCCGTGTGTTTCTGTATGT	9	-	77806770-77806819	9q33	Rattus norvegicus phenylalanyl-tRNA synthetase, beta subunit (Farsb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6432] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe) [goid 4826] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94847	MGC94847
Rattus norvegicus	RefSeq	GI_56605663-S	ILMN_276469	RGD1306284	NM_001008283.1	NM_001008283.1		287918	56605663	NM_001008283.1	RGD1306284	NP_001008284.1	ILMN_1358225	0004150575	S	818	GAAAACTCAGCGGGTGCAAGTCTTAATGCTGTGATGTCATGCCTACGGCC	10	+	106953362-106953411	10q32.3	Rattus norvegicus similar to RIKEN cDNA 1110005A03 (RGD1306284), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105570	MGC105570
Rattus norvegicus	RefSeq	GI_62649151-S	ILMN_59988	LOC502955	XM_578460.1	XM_578460.1		502955	62649151	XM_578460.1	LOC502955	XP_578460.1	ILMN_1349301	0001400398	S	600	GGGAAGGAGACCATTGGAGGAAAAAGGAGCAGAAGAAGGCAGGGATCCAC					PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase, receptor type, D (LOC502955), mRNA.					
Rattus norvegicus	RefSeq	GI_62718459	ILMN_265455	LOC691693	XM_001079298.1	XM_001079298.1		691693	109513660	XM_001079298.1	LOC691693	XP_001079298.1	ILMN_1649833	0004120253	S	1	ATGTCTTTATTTTCCATTAAAAAGAAGGTCTTCATCTCTGAGACAAAGCC	Un|NW_047895.1	-	44738-44787		PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC691693), mRNA.					
Rattus norvegicus	RefSeq	GI_62641003-A	ILMN_287293	ZNF689	NM_173330.1	NM_173330.1		286996	27545417	NM_173330.1	Znf689	NP_775452.1	ILMN_1376285	0000430348	S	2160	CACTCCCTCCTTGTGGGTGGCGTTCAGTTTTGGAAGGCTGCTTATTGCGT	1	-	186712017-186712066	1q36	Rattus norvegicus zinc finger protein 689 (Znf689), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663896-S	ILMN_267449	RGD1308977_PREDICTED	XM_001066258.1	XM_001066258.1		291312	109506085	XM_001066258.1	RGD1308977_predicted	XP_001066258.1	ILMN_1360677	0000520050	S	989	CAAGGGCTATCACAGCAAAAGCCAAACCCATCTCCAGGTCCCAAGGCACG				17q12.3	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110017I16 (predicted) (RGD1308977_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717762-S	ILMN_69247	LOC501217	XM_576640.1	XM_576640.1		501217	62717762	XM_576640.1	LOC501217	XP_576640.1	ILMN_1357378	0003190195	S	1960	CCTCTCTTGGGGCGACTGCTGTGACCTGTGATGAGGTTAAAGAGCACTTG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501217), mRNA.					
Rattus norvegicus	RefSeq	GI_62645345	ILMN_54263	LOC499823	XM_575162.1	XM_575162.1		499823	62645345	XM_575162.1	LOC499823	XP_575162.1	ILMN_1650404	0001780332	S	480	GAGCTGTGACGTACCGGGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTT					PREDICTED: Rattus norvegicus similar to LRRGT00001 (LOC499823), mRNA.					
Rattus norvegicus	RefSeq	GI_47576666-S	ILMN_267688	OLR851	NM_001000400.1	NM_001000400.1		298040	47576666	NM_001000400.1	Olr851	NP_001000400.1	ILMN_1350518	0005220025	S	765	CTTCTCCATGTACGCAAAGCCCAAGGTTAAAGACACTGCTGGGGCAGGCC	5	-	70326233-70326282	5q24	Rattus norvegicus olfactory receptor 851 (Olr851), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr851	Olr851
Rattus norvegicus	RefSeq	GI_62653495-S	ILMN_55854	RGD1565793_PREDICTED	XM_576382.2	XM_576382.2		500972	109483265	XM_576382.2	RGD1565793_predicted	XP_576382.2	ILMN_1367254	0005900278	S	3563	GGAAGTTTTGGTACTAGCAGGTACCTTGAGACCATTGCCAGTCTGCCTGC	8	-	37979974-37980023	8q21	PREDICTED: Rattus norvegicus similar to integral membrane protein 1 (predicted) (RGD1565793_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645084-A	ILMN_294094	RND3	NM_001007641.1	NM_001007641.1		295588	56090635	NM_001007641.1	Rnd3	NP_001007642.1	ILMN_1376851	0005340484	S	1860	AGCGTGATTAAAGAGGAGGCAGGTGGGTGCCGATTTCACCAGGAGAGACC	3	-	32101528-32101577	3q12	Rattus norvegicus Rho family GTPase 3 (Rnd3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	RHOE; Arhe	RHOE; Arhe
Rattus norvegicus	RefSeq	GI_34850055-S	ILMN_50470	MAPRE1	NM_138509.3	NM_138509.3		114764	78097099	NM_138509.3	Mapre1	NP_612518.2	ILMN_1364680	0003520047	S	83	GGCAGTGAATGTGTACTCGACGTCAGTCACCAGTGATAACCTCAGTCGAC	3	+	144125346-144125395	3q41	Rattus norvegicus microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The portion of the microtubule cytoskeleton that lies just beneath the plasma membrane [goid 30981] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule polymerization [goid 31115] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IDA]	Eb1	Eb1
Rattus norvegicus	RefSeq	GI_62645747-S	ILMN_50888	LOC502659	XM_578153.1	XM_578153.1		502659	62645747	XM_578153.1	LOC502659	XP_578153.1	ILMN_1351893	0002900520	S	122	CCGCATACACACAGTCTAATGGTACCAGTCCCAGTCACACCATGAGCTGC				3q34	PREDICTED: Rattus norvegicus similar to ribosomal protein S8 (LOC502659), mRNA.					
Rattus norvegicus	RefSeq	GI_62662581-S	ILMN_63495	NEK1_PREDICTED	XM_214340.3	XM_214340.3		290705	62662581	XM_214340.3	Nek1_predicted	XP_214340.3	ILMN_1351637	0002260520	S	3680	CAACCCCAGCAGTGAAAGCGCCCTAAACGAGGAATGGCACTCAGGTGTGT				16p12	PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)-related expressed kinase 1 (predicted) (Nek1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576714-S	ILMN_297978	OLR172	NM_001000177.1	NM_001000177.1		293319	47576714	NM_001000177.1	Olr172	NP_001000177.1	ILMN_1352796	0007100114	S	779	CCTTTTTCACTCATCGTTTTGGAGGACACACTATTCCCCACCACATCCAC	1	-	162571386-162571435	1q33	Rattus norvegicus olfactory receptor 172 (Olr172), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr172	Olr172
Rattus norvegicus	RefSeq	GI_50511311-A	ILMN_298762	POFUT1	NM_001002278.1	NM_001002278.1		311551	50511311	NM_001002278.1	Pofut1	NP_001002278.1	ILMN_1376278	0002940497	S	1074	TGGAAACTGTGTCTCCTCATTCACTGCCTTCGTGAAGCGGGAGCGGGACC	3	+	143614352-143614401	3q41	Rattus norvegicus protein O-fucosyltransferase 1 (Pofut1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving fucose, or 6-deoxygalactose, which has two enantiomers, D-fucose and L-fucose [goid 6004] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Catalysis of the transfer of an alpha-L-fucosyl residue from GDP- beta-L-fucose to the serine hydroxy group of a protein acceptor [goid 46922] [evidence IEA]	Fut12	Fut12
Rattus norvegicus	RefSeq	GI_62661791-S	ILMN_61461	LOC498557	XM_573833.1	XM_573833.1		498557	62661791	XM_573833.1	LOC498557	XP_573833.1	ILMN_1352330	0002320433	S	1744	GTGAGGAGGGTGAGAAAGACACCAAGGATGACCAGACAGAACAGGAGCCC					PREDICTED: Rattus norvegicus similar to Matrin 3 (LOC498557), mRNA.					
Rattus norvegicus	RefSeq	GI_47577042-S	ILMN_287620	OLR776	NM_001000608.1	NM_001000608.1		404797	47577042	NM_001000608.1	Olr776	NP_001000608.1	ILMN_1350375	0002470594	S	260	GAAAGCACAAAGTCATCTCCTTTGGAGGTTGTATCACTCAGATCTTCTTC	3	-	97448209-97448258	3q34	Rattus norvegicus olfactory receptor 776 (Olr776), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr776	Olr776
Rattus norvegicus	RefSeq	GI_57114283-S	ILMN_271653	V1RE12	NM_001008969.1	NM_001008969.1		494312	57114283	NM_001008969.1	V1re12	NP_001008969.1	ILMN_1359258	0005700707	S	749	CCTCCACCTTAAGAGGTTCCATTGCTCTCTTGTCTAATCACAGTTGGTGG	1	-	64752796-64752845	1q12	Rattus norvegicus vomeronasal 1 receptor, E12 (V1re12), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644484-S	ILMN_280697	GBP4_PREDICTED	XM_001078892.1	XM_001078892.1		310917	109467736	XM_001078892.1	Gbp4_predicted	XP_001078892.1	ILMN_1356099	0005290192	S	1563	GCTGCTGAAACAGAGACAGAAGGAGCAAGAGCAAGTGATGGAGGCTCAGG				2q44	PREDICTED: Rattus norvegicus guanylate nucleotide binding protein 4 (predicted) (Gbp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648439-S	ILMN_283113	RGD1564925_PREDICTED	XM_001073171.1	XM_001073171.1		502918	109474432	XM_001073171.1	RGD1564925_predicted	XP_001073171.1	ILMN_1374943	0000510315	S	1515	GCTGGCATCCTTGACGCTGTTGAACATCCTGGGACTCTGGAGGGTTTTGC				4q44	PREDICTED: Rattus norvegicus similar to hypothetical protein 9830102E05 (predicted) (RGD1564925_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39930502-S	ILMN_269710	ATP5C1	NM_053825.1	NM_053825.1		116550	39930502	NM_053825.1	Atp5c1	NP_446277.1	ILMN_1358213	0003120020	S	851	AATTGACGCTGACTTTCAACCGCACCCGCCAGGCCGTCATCACGAAGGAG	17	+	79758007-79758056	17q12.3	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (Atp5c1), nuclear gene encoding mitochondrial protein, mRNA.	The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled [goid 275] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence NAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]	The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis [goid 6119] [evidence NAS]; The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate [goid 6172] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660806-S	ILMN_56237	ABCA13_PREDICTED	XM_223625.4	XM_223625.4		289797	109500045	XM_223625.4	Abca13_predicted	XP_223625.4	ILMN_1355753	0003520309	S	15049	GCCACTGAGCAAACTCCACACTTTCCTGTTGATCCTCCATCCACCAATGC	14	+	90226446-90226495	14q21	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 13 (predicted) (Abca13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643472-S	ILMN_266576	RGD1562629_PREDICTED	XM_001059612.1	XM_001059612.1		361948	109466684	XM_001059612.1	RGD1562629_predicted	XP_001059612.1	ILMN_1353711	0000730014	S	3610	ACGACGTCAGATGGAGTGAGCAGTGTCTCTGAACGAGAGTTAGCATCATC				2q26	PREDICTED: Rattus norvegicus similar to neurobeachin (predicted) (RGD1562629_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643470-S	ILMN_266576	RGD1562629_PREDICTED	XM_001059612.1	XM_001059612.1		361948	109466684	XM_001059612.1	RGD1562629_predicted	XP_001059612.1	ILMN_1368493	0002900408	S	10298	CACCAGGCTGTGAGCAATATCTTGAGTTTGTAGCTTAGAATTGGGAAGGC				2q26	PREDICTED: Rattus norvegicus similar to neurobeachin (predicted) (RGD1562629_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648174-S	ILMN_267220	VWF	XM_001066203.1	XM_001066203.1		116669	109474241	XM_001066203.1	Vwf	XP_001066203.1	ILMN_1352807	0006770364	S	8651	TGCAGATGTTCTCCCCGTAATTGTGGCAAGTGAGGCCTGTGCAGCCACGG				4q42	PREDICTED: Rattus norvegicus von Willebrand factor (Vwf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; A large, elongated, rod-shaped secretory granule characteristic of vascular endothelial cells that contain a number of structurally and functionally distinct proteins, of which the best characterized are von Willebrand factor (VWF) and P-selectin. Weibel-Palade bodies are formed from the trans-Golgi network in a process that depends on VWF, which is densely packed in a highly organized manner, and on coat proteins that remain associated with the granules. Upon cell stimulation, regulated exocytosis releases the contained proteins to the cell surface, where they act in the recruitment of platelets and leukocytes and in inflammatory and vasoactive responses [goid 33093] [evidence IEA]; A large, elongated, rod-shaped secretory granule characteristic of vascular endothelial cells that contain a number of structurally and functionally distinct proteins, of which the best characterized are von Willebrand factor (VWF) and P-selectin. Weibel-Palade bodies are formed from the trans-Golgi network in a process that depends on VWF, which is densely packed in a highly organized manner, and on coat proteins that remain associated with the granules. Upon cell stimulation, regulated exocytosis releases the contained proteins to the cell surface, where they act in the recruitment of platelets and leukocytes and in inflammatory and vasoactive responses [goid 33093] [evidence ISS]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IMP]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part [goid 7599] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IMP]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence IEA]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence NAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with any protease or peptidase [goid 2020] [evidence IEA]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence IEA]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence ISS]; Interacting selectively with an immunoglobulin [goid 19865] [evidence IEA]; Interacting selectively with an immunoglobulin [goid 19865] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658124	ILMN_299444	LOC303823	XM_221319.2	XM_221319.2		303823	62658124	XM_221319.2	LOC303823	XP_221319.2	ILMN_1649976	0000540451	S	1837	GGCCTCAAACTCAATGTCCTCCTGCCTCAACCCCTTGAGTAGCTAGAGTG	11	-	81325151-81325155:81325156-81325200	11q23	PREDICTED: Rattus norvegicus similar to mitogen-activated protein kinase kinase kinase 13; leucine zipper-bearing kinase (LOC303823), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647747-S	ILMN_58667	ANTXR1_PREDICTED	XM_342718.2	XM_342718.2		362393	62647747	XM_342718.2	Antxr1_predicted	XP_342719.2	ILMN_1359770	0002350411	S	2435	GGAAATCCTTGCGAGTTGTCACGGGAGGGCGCTGTATCAACTTCACCAGA				4q34	PREDICTED: Rattus norvegicus anthrax toxin receptor 1 (predicted) (Antxr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651045-S	ILMN_289700	LOC685664	XM_001064725.1	XM_001064725.1		685664	109478501	XM_001064725.1	LOC685664	XP_001064725.1	ILMN_1373585	0003990253	S	529	CCTGGTAAAAGACTGGGCTGAGTTTGTGAAGCTGGCTGAGCTGCCGTGCC	6	+	108187553-108187569:108189128-108189160	6q31	PREDICTED: Rattus norvegicus similar to axonemal dynein light chain 1 (LOC685664), mRNA.					
Rattus norvegicus	RefSeq	GI_56090615-S	ILMN_285586	CABP7	NM_001007730.1	NM_001007730.1		360970	56090615	NM_001007730.1	Cabp7	NP_001007731.1	ILMN_1358635	0002650162	S	2694	AACATGCAGACCCTCTGAGCCAGCCACCTCTTCTCGGAACTGAGCCCAAG	14	-	85385599-85385648	14q21	Rattus norvegicus calcium binding protein 7 (Cabp7), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC94082; rCaBP7	MGC94082; rCaBP7
Rattus norvegicus	RefSeq	GI_6978502-S	ILMN_288045	ANXA3	NM_012823.1	NM_012823.1		25291	6978502	NM_012823.1	Anxa3	NP_036955.1	ILMN_1368619	0003710504	S	1130	ACAGCACTCCAGCAATGGGCAAGCGAATGCAAGACAGCAACCCGTCTGCC	14	-	14245388-14245437	14p22	Rattus norvegicus annexin A3 (Anxa3), mRNA.			Stops, prevents or reduces the activity of a phospholipase, an enzyme that catalyzes of the hydrolysis of a phospholipid [goid 4859] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Stops, prevents or reduces the activity of the enzyme phospholipase A2 [goid 19834] [evidence IDA]; Stops, prevents or reduces the activity of the enzyme phospholipase A2 [goid 19834] [evidence IEA]	LRRGT00047; LC3; Anx3	LRRGT00047; LC3; Anx3
Rattus norvegicus	RefSeq	GI_62645710-S	ILMN_298707	YPEL4	NM_001024369.1	NM_001024369.1		502643	66730542	NM_001024369.1	Ypel4	NP_001019540.1	ILMN_1368902	0005900161	S	566	AGCTGAACAGCGCCTCCTGCTCACAGGACTCCACTCGGTAGCTGACATTT	3	+	67947017-67947066	3q24	Rattus norvegicus yippee-like 4 (Drosophila) (Ypel4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62638638-S	ILMN_59601	LOC499040	XM_579910.1	XM_579910.1		499040	62638638	XM_579910.1	LOC499040	XP_579910.1	ILMN_1350726	0002190168	S	694	CCACTTTCAAAGGACCTTCACTGTCACATAACCGGCGCTATTTCAGTGCC					PREDICTED: Rattus norvegicus LOC499040 (LOC499040), mRNA.					
Rattus norvegicus	RefSeq	GI_62660938-S	ILMN_65714	RGD1306694_PREDICTED	XM_223709.4	XM_223709.4		305605	109500134	XM_223709.4	RGD1306694_predicted	XP_223709.4	ILMN_1369133	0000430121	S	5208	ACAGTAGACAGTCAAGCCCATCACAAGATGAACGCTGGCTCCCCAGGAAG	14	+	110520125-110520174	14q22	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1306694_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657332-S	ILMN_58231	LOC360656	XM_340933.2	XM_340933.2		360656	62657332	XM_340933.2	LOC360656	XP_340934.2	ILMN_1362354	0006620441	S	2143	AGGCCGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCC				10q32.3	PREDICTED: Rattus norvegicus similar to paraneoplastic antigen (predicted) (LOC360656), mRNA.					
Rattus norvegicus	RefSeq	GI_62652687-S	ILMN_268010	RBM9_PREDICTED	XM_001075672.1	XM_001075672.1		362950	109482521	XM_001075672.1	Rbm9_predicted	XP_001075672.1	ILMN_1372119	0006350369	S	3667	GGCTCCAAAATGAAGGCATTAGGAAACCGGAGTGTCAACGGGCTCCCTGG				7q34	PREDICTED: Rattus norvegicus RNA binding motif protein 9 (predicted) (Rbm9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659448-S	ILMN_296341	RGS1	NM_019336.1	NM_019336.1		54289	71895006	NM_019336.1	Rgs1	NP_062209.1	ILMN_1374803	0001340280	S	827	CGGTGGAGACTTGAGGAAACATCGCAAGAAGAACAGGGTGAGGCAAGTGG	13	-	58121606-58121655	13q21	Rattus norvegicus regulator of G-protein signaling 1 (Rgs1), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	MGC112645	MGC112645
Rattus norvegicus	RefSeq	GI_62648460-S	ILMN_69939	LOC366022	XM_345341.2	XM_345341.2		366022	62648460	XM_345341.2	LOC366022	XP_345342.2	ILMN_1350651	0002480041	S	341	TTCTGTCGGCCCAGCAGATGGGTCACGCTGCTATCGGGCTGAAGCTCTCG					PREDICTED: Rattus norvegicus similar to PBX3a (LOC366022), mRNA.					
Rattus norvegicus	RefSeq	GI_6978500-S	ILMN_284756	ANXA1	NM_012904.1	NM_012904.1		25380	6978500	NM_012904.1	Anxa1	NP_037036.1	ILMN_1353924	0003830368	S	1074	TCCTGGTGGCTCTGTGTGGAGGAAACTAAACATCCCAACTGCTCTGTAAG	1	-	223478700-223478722:223478723-223478749	1q51	Rattus norvegicus annexin A1 (Anxa1), mRNA.	An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IDA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence ISS]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence TAS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Stops, prevents or reduces the activity of the enzyme phospholipase A2 [goid 19834] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]	Anx1; p35	Anx1; p35
Rattus norvegicus	RefSeq	GI_62659622-S	ILMN_280987	BLZF1	NM_001017494.1	NM_001017494.1		498266	62945339	NM_001017494.1	Blzf1	NP_001017494.1	ILMN_1359745	0003360022	S	1833	GGGATTCGCAGTCCCTTTATAGTCACATTGTGGGTGTGCAAGCAGCCTTC	13	-	80057653-80057702	13q22	Rattus norvegicus basic leucine zipper nuclear factor 1 (Blzf1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659668-S	ILMN_62079	RGD1564106_PREDICTED	XM_222824.4	XM_222824.4		289167	109498113	XM_222824.4	RGD1564106_predicted	XP_222824.4	ILMN_1371763	0003850026	S	648	CATTCTGAAGGACAATGTAGCGCGGGAGGGCTGTATCTTTGACCTGTCTG	13	-	79460663-79460712	13q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1564106_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57977316-A	ILMN_270294	RTN3	NM_001009953.1	NM_001009953.1		140945	57977316	NM_001009953.1	Rtn3	NP_001009953.1	ILMN_1376290	0001740551	A	1376	AATGCCACCTGAGAAGTGCCAGGGGTAAGGGGACAGTGGGGGGAGCAGTC	1	-	210110846-210110895	1q43	Rattus norvegicus reticulon 3 (Rtn3), transcript variant 2, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62653766-S	ILMN_266790	ADPGK	XM_001072870.1	XM_001072870.1		315722	109484784	XM_001072870.1	Adpgk	XP_001072870.1	ILMN_1373217	0003840075	S	2261	TCCTGCCTCAGCTTCAGAGATTGGGGCTGACTGAGAAAAGGCCCTATGGC				8q24	PREDICTED: Rattus norvegicus ADP-dependent glucokinase (Adpgk), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663162-S	ILMN_66542	LOC364670	XM_573978.1	XM_573978.1		364670	62663162	XM_573978.1	LOC364670	XP_573978.1	ILMN_1366823	0006650167	S	1541	GGGCAGTGTCCAGTTTGCACAGCCGTCCATGAAGGCCCTAGGTTATAGAC				17p14	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC364670), mRNA.					
Rattus norvegicus	RefSeq	GI_8394465-S	ILMN_270232	TNNI2	NM_017185.1	NM_017185.1		29389	8394465	NM_017185.1	Tnni2	NP_058881.1	ILMN_1371203	0007000292	S	299	GCAGCAAGGAGCTGGAAGACATGAACCAGAAGCTATTTGACCTGAGGGGC	1	+	202689434-202689444:202689673-202689711	1q41	Rattus norvegicus troponin I type 2 (skeletal, fast) (Tnni2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IEA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IDA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence IEA]; A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence IEA]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34872091-S	ILMN_70139	LOC363911	XM_344104.1	XM_344104.1		363911	34872091	XM_344104.1	LOC363911	XP_344105.1	ILMN_1372456	0001230286	S	169	GGGAACTGCAGTGGTCAGTTGGTCTTGGTGTTAGAGGCACTGGCATTGTC				12q13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC363911), mRNA.					
Rattus norvegicus	RefSeq	GI_18266683-S	ILMN_280087	SC4MOL	NM_080886.1	NM_080886.1		140910	18266683	NM_080886.1	Sc4mol	NP_543162.1	ILMN_1351456	0000840731	S	1084	CTGCGGGATGAGAACTCTTCTGCTCGACACCCAAGATCTGTAAATGTGGG	16	+	26715619-26715668	16p13	Rattus norvegicus sterol-C4-methyl oxidase-like (Sc4mol), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 4,4-dimethyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NAD(P)H + H+ + O2 = 4-beta-hydroxymethyl-4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NAD(P)+ + H2O [goid 254] [evidence ISS]; Catalysis of the reaction: 4,4-dimethyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NAD(P)H + H+ + O2 = 4-beta-hydroxymethyl-4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NAD(P)+ + H2O [goid 254] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656614-S	ILMN_59125	RGD1304598_PREDICTED	XM_220745.4	XM_220745.4		303343	109488618	XM_220745.4	RGD1304598_predicted	XP_220745.3	ILMN_1364237	0003610400	S	1225	TTCCTGCGCCCTGAGCCCTTGCCAGCATGGAGTCACGAGATCATCTTGGA	10	-	66599551-66599600	10q26	PREDICTED: Rattus norvegicus similar to abhydrolase domain containing 1; alpha/beta hydrolase-1; lung alpha/beta hydrolase 1 (predicted) (RGD1304598_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639047-S	ILMN_57460	LOC365202	XM_344864.2	XM_344864.2		365202	62639047	XM_344864.2	LOC365202	XP_344865.2	ILMN_1369469	0004230148	S	14	TGAGTGGGGTCTGAGTCGGGTGTACAGCACAGAAGAAGACACTGCAGGGC					PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (LOC365202), mRNA.					
Rattus norvegicus	RefSeq	GI_58865617-A	ILMN_296996	PAPOLB	NM_001012020.2	NM_001012020.2		304300	77874464	NM_001012020.2	Papolb	NP_001012020.1	ILMN_1376940	0005720129	S	1919	CCTGACGTTTCCTTGCAGCACGTGAACCCCATAGAAAGTTCAGGGATTGC	12	+	12442680-12442729	12p11	Rattus norvegicus poly (A) polymerase beta (testis specific) (Papolb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule [goid 43631] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group [goid 4652] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653095-S	ILMN_56861	LOC503169	XM_578693.1	XM_578693.1		503169	62653095	XM_578693.1	LOC503169	XP_578693.1	ILMN_1366077	0000110008	S	547	GCACCAGACGGCGCTGCCCTTACATCCATTCTCTGACTTACAACAGCCCT				7q35	PREDICTED: Rattus norvegicus similar to ribosomal protein L10 (LOC503169), mRNA.					
Rattus norvegicus	RefSeq	GI_61740622-S	ILMN_278462	PLA2G2D	NM_001013428.1	NM_001013428.1		298579	61740622	NM_001013428.1	Pla2g2d	NP_001013446.1	ILMN_1371765	0000940133	S	1719	GCCCAGTCAAAACACACCATTGCCCCCAGCCCATTCTAACACAGACCTCC	5	+	157600695-157600744	5q36	Rattus norvegicus phospholipase A2, group IID (Pla2g2d), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC108956	MGC108956
Rattus norvegicus	RefSeq	GI_62643895-S	ILMN_47725	LASS2_PREDICTED	XM_227443.2	XM_227443.2		310667	62643895	XM_227443.2	Lass2_predicted	XP_227443.2	ILMN_1352004	0007000672	S	1996	GCCAGGGTTGTGCCTTACTGTCCCTTTTCTGGGCCTCATTCTGCCAAAGC				2q34	PREDICTED: Rattus norvegicus longevity assurance homolog 2 (S. cerevisiae) (predicted) (Lass2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638804-S	ILMN_67557	LOC361489	XM_341768.2	XM_341768.2		361489	62638804	XM_341768.2	LOC361489	XP_341769.2	ILMN_1349167	0004810450	S	723	AGTGCTGAAGCCCTTGTGCCAGCTGTTCCAGCTACTCCGATACCAAGCAG					PREDICTED: Rattus norvegicus similar to BC021442 protein (LOC361489), mRNA.					
Rattus norvegicus	RefSeq	GI_62665056-S	ILMN_52150	RGD1308221_PREDICTED	XM_222477.4	XM_222477.4		304645	109507947	XM_222477.4	RGD1308221_predicted	XP_222477.4	ILMN_1370694	0004850577	S	3597	AGGGACAACGGGGCCTGCTCCTCCATGTTGATCTCCGATGACGACACCAA	19	-	26573147-26573196	19q11	PREDICTED: Rattus norvegicus similar to TBC1 domain family, member 8 (with GRAM domain); vascular Rab-GAP/TBC-containing (predicted) (RGD1308221_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869165-S	ILMN_270085	QTRTD1_PREDICTED	XM_001067760.1	XM_001067760.1		288364	109494398	XM_001067760.1	Qtrtd1_predicted	XP_001067760.1	ILMN_1354947	0000380603	S	1197	GAGTGACACGCTGGCACAGCTGAAAGAGCTCATCCGCAGACAGATGTCCT				11q21	PREDICTED: Rattus norvegicus queuine tRNA-ribosyltransferase domain containing 1 (predicted) (Qtrtd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646233-S	ILMN_51808	LOC499933	XM_575278.1	XM_575278.1		499933	62646233	XM_575278.1	LOC499933	XP_575278.1	ILMN_1356089	0000630040	S	700	GAAAGATTGAGGGGACCATTCCTCGGGTCTCTGATTGCCATGCAGAGGGC				3q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700022L09 (LOC499933), mRNA.					
Rattus norvegicus	RefSeq	GI_62665058-S	ILMN_52238	ZFP330_PREDICTED	XM_341666.3	XM_341666.3		361387	109507951	XM_341666.3	Zfp330_predicted	XP_341667.3	ILMN_1355975	0003840132	S	1807	CGTGGTTGGCATGTTCACTGTTTGCGTACAATGCGTGTCCTCTGCAGTGC	19	+	27059727-27059776	19q11	PREDICTED: Rattus norvegicus zinc finger protein 330 (predicted) (Zfp330_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641412-S	ILMN_290178	RGD1559927_PREDICTED	XM_001054019.1	XM_001054019.1		293537	109463034	XM_001054019.1	RGD1559927_predicted	XP_001054019.1	ILMN_1364061	0001500551	S	1069	TGAGACGGGAGAGGGGAGAGGGAATGAGCACCCGGCCACCTTTCGGGGAT				1q41	PREDICTED: Rattus norvegicus similar to homeodomain protein (predicted) (RGD1559927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664392-S	ILMN_48660	SEMA6A_PREDICTED	XM_341612.3	XM_341612.3		361324	109506568	XM_341612.3	Sema6a_predicted	XP_341613.1	ILMN_1357664	0003060014	S	4355	TGCCCACCAGTGTTATAGCTTCGTGATAGCAGGTAAATGCCACGCTGGGC	18	-	41545587-41545636	18q11	PREDICTED: Rattus norvegicus sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A (predicted) (Sema6a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799417-S	ILMN_262969	EIF4E	NM_053974.2	NM_053974.2		117045	56799417	NM_053974.2	Eif4e	NP_446426.1	ILMN_1358647	0001230377	S	2225	CAAAGGGTAAGCTGAACTGTGGGTGGCAGAGTGGAGACCGCTGGTGAGAG	2	+	236104569-236104618	2q44	Rattus norvegicus eukaryotic translation initiation factor 4E (Eif4e), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence TAS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93265	MGC93265
Rattus norvegicus	RefSeq	GI_62666311-S	ILMN_68411	LOC499476	XM_574799.1	XM_574799.1		499476	62666311	XM_574799.1	LOC499476	XP_574799.1	ILMN_1374701	0001940400	S	658	GGAACTCTTCCAGTCAGAACTACGACATGGTCAGTGGGATATACTCATGG					PREDICTED: Rattus norvegicus similar to candidate tumor suppressor protein (LOC499476), mRNA.					
Rattus norvegicus	RefSeq	GI_62640437-S	ILMN_289033	MKRN3_PREDICTED	XM_001057262.1	XM_001057262.1		292988	109462072	XM_001057262.1	Mkrn3_predicted	XP_001057262.1	ILMN_1369293	0005910333	S	1688	GCCTGCGAGGCAGTTTTTCCATCTCTGATGACCGGTGGCTCTTGCTTCAG				1q22	PREDICTED: Rattus norvegicus makorin, ring finger protein, 3 (predicted) (Mkrn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651901-S	ILMN_65333	RGD1560432_PREDICTED	XM_345809.3	XM_345809.3		366859	109480410	XM_345809.3	RGD1560432_predicted	XP_345810.3	ILMN_1370860	0005570725	S	786	GTGGCACATAAGGCACCTCGGCTGGAACCCTGATGCAAGATATTCGGAGC	7	+	23297469-23297488:23299163-23299192	7q13	PREDICTED: Rattus norvegicus similar to glycosyltransferase 8 domain containing 2 (predicted) (RGD1560432_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079186-S	ILMN_301330	IQCG	NM_001014230.1	NM_001014230.1		363796	62079186	NM_001014230.1	Iqcg	NP_001014252.1	ILMN_1373774	0006840128	S	1297	AGACGCGAAAGGCAAGGAGAAGGACAAGCGGAGAGGCAAGAAGTAACGAG	11	+	69590722-69590767:69590768-69590771	11q22	Rattus norvegicus IQ motif containing G (Iqcg), mRNA.				RGD1311606	RGD1311606
Rattus norvegicus	RefSeq	GI_62648417-S	ILMN_67580	RGD1563110_PREDICTED	XM_578407.2	XM_578407.2		502905	109472719	XM_578407.2	RGD1563110_predicted	XP_578407.2	ILMN_1350951	0004560176	S	48	TTCAGGGCGGCAGAACCAAGTGAGGCCTGAAGAGACTCAAACGGCCAGAG	4	-	167504516-167504565	4q42	PREDICTED: Rattus norvegicus similar to immunoreceptor Ly49si3 (predicted) (RGD1563110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758403-S	ILMN_292805	PRDX5	NM_053610.1	NM_053610.1		113898	16758403	NM_053610.1	Prdx5	NP_446062.1	ILMN_1363325	0000770463	S	590	TAGACAAGGGCGTAGTAAAGGCACTGAACGTGGAGCCGGATGGCACAGGC	1	-	209583590-209583639	1q43	Rattus norvegicus peroxiredoxin 5 (Prdx5), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 14561759] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [pmid 14561759] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IEA]	Aoeb166	Aoeb166
Rattus norvegicus	RefSeq	GI_62657256-S	ILMN_52553	LOC287782	XM_212679.3	XM_212679.3		287782	62657256	XM_212679.3	LOC287782	XP_212679.3	ILMN_1371129	0002680095	S	458	GGCTGCTGGTGCCCTTGTGTCTTCCCTAGGAACGCCTTTATTTCAGCAAG				10q32.1	PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (LOC287782), mRNA.					
Rattus norvegicus	RefSeq	GI_46195740	ILMN_52233	GNB5	NM_031770.2	NM_031770.2		83579	59709465	NM_031770.2	Gnb5	NP_113958.1	ILMN_1650386	0003390068	S	869	AGCATCAAGCGTGGATTTCTCCCTCAGTGGCCGCCTGCTCTTTGCTGGGT	8	+	80169197-80169246	8q24	Rattus norvegicus guanine nucleotide binding protein, beta 5 (Gnb5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105255	MGC105255
Rattus norvegicus	RefSeq	GI_11560134-S	ILMN_267499	BASP1	XM_001063291.1	XM_001063291.1		64160	109466229	XM_001063291.1	Basp1	XP_001063291.1	ILMN_1365368	0000060239	S	760	TCCGAGCAAAGCGTGGCCGTCAAAGAGTAACCGGGACAGCCTAGCCAGAA				2q22	PREDICTED: Rattus norvegicus brain abundant, membrane attached signal protein 1 (Basp1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]		Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652842-S	ILMN_272516	SCUBE1	XM_001078005.1	XM_001078005.1		315174	109482576	XM_001078005.1	Scube1	XP_001078005.1	ILMN_1349659	0006760672	S	3602	GTGTGTGGTGGTGCCATCTGGGGAGTTGATAAGCCTGTGCCAGTGCCTGT				7q34	PREDICTED: Rattus norvegicus signal peptide, CUB domain, EGF-like 1 (Scube1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence IEA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652921-S	ILMN_48022	SBF1_PREDICTED	XM_217021.4	XM_217021.4		300147	109481180	XM_217021.4	Sbf1_predicted	XP_217021.4	ILMN_1361505	0002370050	S	5896	GGCCCTCGACAGTATTTGAGGCCCTGAGCCCCCCAGCACTTGTGTGTACA	7	-	127583983-127584032	7q34	PREDICTED: Rattus norvegicus SET binding factor 1 (predicted) (Sbf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40556303-S	ILMN_296281	DOXL2	NM_199291.1	NM_199291.1		312317	40556303	NM_199291.1	Doxl2	NP_954985.1	ILMN_1366011	0004780047	S	2186	CTTCAGTGGGGCCTACAACCCTGTGTAAAGAGTCCAACCCCAGTTCCTGC	4	+	77087504-77087553	4q24	Rattus norvegicus diamine oxidase-like protein 2 (Doxl2), mRNA.		The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IEA]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence IEA]	MGC114229	MGC114229
Rattus norvegicus	RefSeq	GI_62652431-S	ILMN_68990	COL14A1_PREDICTED	XM_235308.4	XM_235308.4		314981	109480776	XM_235308.4	Col14a1_predicted	XP_235308.4	ILMN_1374380	0002570524	S	6310	TGTCCAGAAGTGTGTTTCAGGGCTTGCCTCTCCTTGACTACAGGGATTGC	7	+	92032842-92032891	7q32	PREDICTED: Rattus norvegicus procollagen, type XIV, alpha 1 (predicted) (Col14a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012445-S	ILMN_267471	KRT42	NM_001008816.1	NM_001008816.1		450231	57012445	NM_001008816.1	Krt42	NP_001008816.1	ILMN_1370594	0004210722	S	991	AAAGCATCGCTGGAGAACAGCCTGGCAGAGACAGAGGCACGTTATGGGGC	10	-	89194538-89194587	10q32.1	Rattus norvegicus keratin 42 (Krt42), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656642-S	ILMN_60998	PSMD11_PREDICTED	XM_220754.4	XM_220754.4		303353	109488637	XM_220754.4	Psmd11_predicted	XP_220754.3	ILMN_1372440	0006760114	S	1932	TGGATCTGTAGCGGTCCTTTGGAGAGTGTGTGTGGCGGGAGAGTGAACCC	10	+	68709470-68709519	10q26	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 (predicted) (Psmd11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653267-S	ILMN_67251	LOC500948	XM_576359.1	XM_576359.1		500948	62653267	XM_576359.1	LOC500948	XP_576359.1	ILMN_1360619	0003140609	S	551	GGGACCGAAGAGGATAGGGACTCCACAAGAAGACCGACAAAGTCAAGGGC					PREDICTED: Rattus norvegicus similar to LRRGT00073 (LOC500948), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_13592044-S	ILMN_274166	GRK1	NM_031096.1	NM_031096.1		81760	13592044	NM_031096.1	Grk1	NP_112358.1	ILMN_1357908	0005900538	S	1796	GGTCAAATGCCCGATGACATGAAGGGAATCACCGTGGAGGAGGCAGCCCC	16	-	80979594-80979643	16q12.5	Rattus norvegicus G protein-coupled receptor kinase 1 (Grk1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Morphogenesis of photoreceptors, sensory cells that react to the presence of light [goid 8594] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events then required to return the rhodopsin containing cell to the unexcited state [goid 9586] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The process by which the anatomical structure of the retina is generated and organized in a camera-type eye during the post-embryonic life stage . Morphogenesis pertains to the creation of form [goid 60060] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + rhodopsin = ADP + phosphorhodopsin [goid 50254] [evidence TAS]; Catalysis of the reaction: ATP + rhodopsin = ADP + phosphorhodopsin [goid 50254] [evidence IDA]; Catalysis of the reaction: ATP + rhodopsin = ADP + phosphorhodopsin [goid 50254] [evidence IEA]	Rhok	Rhok
Rattus norvegicus	RefSeq	GI_62079042-S	ILMN_300378	LRRC50	NM_001014154.1	NM_001014154.1		361419	62079042	NM_001014154.1	Lrrc50	NP_001014176.1	ILMN_1370211	0003940672	S	1453	GTGTCTGTGGAAGACCAGACAAAGGACACAGGCATCCGGAAAATCCAGGC	19	+	49840150-49840173:49841161-49841186	19q12	Rattus norvegicus leucine rich repeat containing 50 (Lrrc50), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1310542	RGD1310542
Rattus norvegicus	RefSeq	GI_62651712-S	ILMN_264606	DIRAS1_PREDICTED	XM_001075989.1	XM_001075989.1		366826	109481541	XM_001075989.1	Diras1_predicted	XP_001075989.1	ILMN_1360180	0006660113	S	624	GACGGCAAACGCTCCAACAAGCAGAAGAGGGCCGACCGCATCAAGGGCAA				7q11	PREDICTED: Rattus norvegicus DIRAS family, GTP-binding RAS-like 1 (predicted) (Diras1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656215-S	ILMN_296731	RGD1310324_PREDICTED	XR_009188.1	XR_009188.1		287388	109490969	XR_009188.1	RGD1310324_predicted		ILMN_1351403	0000840541	S	637	CCTCACAGGCTGCAGAGGGTGTGTGCGGTTAAGAGCCCTCTATGATCTTA				10q23	PREDICTED: Rattus norvegicus hypothetical LOC287388 (predicted) (RGD1310324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662207-S	ILMN_295052	CHAT_PREDICTED	XM_001061520.1	XM_001061520.1		290567	109503794	XM_001061520.1	Chat_predicted	XP_001061520.1	ILMN_1363883	0002940064	S	2088	AGAGACCTCGTCTGTGGAGTTTGCGGAAGCTGTGGGAGCGAGCCTTGTTG				16p16	PREDICTED: Rattus norvegicus choline acetyltransferase (predicted) (Chat_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656843-S	ILMN_266340	HLF	XM_001081149.1	XM_001081149.1		363667	109491637	XM_001081149.1	Hlf	XP_001081149.1	ILMN_1351864	0002360706	S	1280	CTCCGCCAGGAGGTGGCTGATTTAAGGAAGGAGCTGGGCAAATGCAAGAA					PREDICTED: Rattus norvegicus hepatic leukemia factor (Hlf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645635-S	ILMN_266428	LOC691905	XM_001080051.1	XM_001080051.1		691905	109468691	XM_001080051.1	LOC691905	XP_001080051.1	ILMN_1356725	0003360300	S	2180	GCCCTGAAGACCACCTCCAGCCCCAGGAATGTTACCTTTTCTCAGACCCC	3	-	106760180-106760229	3q35	PREDICTED: Rattus norvegicus similar to cytosolic phospholipase A2 delta (LOC691905), mRNA.					
Rattus norvegicus	RefSeq	GI_13591903-S	ILMN_270583	ADAR	NM_031006.1	NM_031006.1		81635	13591903	NM_031006.1	Adar	NP_112268.1	ILMN_2039943	0007150228	S	3460	AAGCCTGAGGGACATGGGCTATGGGAATTGGATCAGCAAACCCCAGGAGG	2	+	181955891-181955940	2q34	Rattus norvegicus adenosine deaminase, RNA-specific (Adar), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The conversion of an adenosine residue to inosine in an RNA molecule by deamination [goid 6382] [evidence TAS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s) [goid 16553] [evidence ISS]; Any process by which RNA molecules inactivate expression of target genes [goid 31047] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IMP]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule [goid 3726] [evidence IDA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule [goid 3726] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653279-S	ILMN_268795	RGD1563757_PREDICTED	XM_001076316.1	XM_001076316.1		367030	109484327	XM_001076316.1	RGD1563757_predicted	XP_001076316.1	ILMN_1363047	0006510398	S	956	CTGAGTGGTCCTGAGCTGCTTTGCAGATGCCTGAGAGAAGGGAAGAAAAG				8q13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (predicted) (RGD1563757_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27678383-S	ILMN_65878	LOC304971	XM_222887.1	XM_222887.1		304971	27678383	XM_222887.1	LOC304971	XP_222887.1	ILMN_1368818	0005550066	S	805	GGTGTGTAGGTGCTGTGTTGGAGAAGAAGATGCGTCCCCTGCCTGTCACC					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12770 (LOC304971), mRNA.					
Rattus norvegicus	RefSeq	GI_62666520-S	ILMN_57713	RGD1562289_PREDICTED	XM_576917.2	XM_576917.2		501516	109510430	XM_576917.2	RGD1562289_predicted	XP_576917.1	ILMN_1356776	0000540048	S	1505	TCTTCCACTGTCCCCTCAGATTTACCTATAGGATGAGCTCCGGCTCAGGG	X	+	18020876-18020925	Xq12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330016H24 (predicted) (RGD1562289_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665233-S	ILMN_61555	LOC502201	XM_577662.2	XM_577662.2		502201	109508052	XM_577662.2	LOC502201	XP_577662.2	ILMN_1350142	0006550358	S	1093	TTGGACATGGCTGAATGCTGTCTAGTGAGTGGTCGGGAGCTGGCCCAGGT	19	-	35128936-35128985	19q11	PREDICTED: Rattus norvegicus similar to CG8272-PA (LOC502201), mRNA.					
Rattus norvegicus	RefSeq	GI_62718776-S	ILMN_61788	LOC367662	XM_346242.2	XM_346242.2		367662	62718776	XM_346242.2	LOC367662	XP_346243.2	ILMN_1363037	0002120092	S	6	GCTTATACAGCATGTGAAACTGAACCTAAACCCAAGGTCTACAGCCAAGA					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC367662), mRNA.					
Rattus norvegicus	RefSeq	GI_62648362-S	ILMN_65060	LOC502877	XM_578378.1	XM_578378.1		502877	62648362	XM_578378.1	LOC502877	XP_578378.1	ILMN_1368926	0002680497	S	145	GACACCTACAGCTCAGGGAGGAAGAAGGGGTCAAGGGTCAGCAAGATCGG					PREDICTED: Rattus norvegicus similar to DEP domain containing 6 (LOC502877), mRNA.					
Rattus norvegicus	RefSeq	GI_62651216-S	ILMN_270653	RGD1559705_PREDICTED	XR_008566.1	XR_008566.1		366724	109479940	XR_008566.1	RGD1559705_predicted		ILMN_1358402	0002760204	S	23	GAAGAGGCACGCAGTATGTTCTCTAGGCCTTTCGGGAAACCTGGAGTTGT				6q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1559705_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576108-S	ILMN_262517	OLR1395	NM_001001092.1	NM_001001092.1		405986	47576108	NM_001001092.1	Olr1395	NP_001001092.1	ILMN_1352022	0006380519	S	558	GGCCTGCAAGGACACAGGAGATACAGAGGCCAAGATGTTTGTAGTCAGAG	10	+	34887180-34887229	10q22	Rattus norvegicus olfactory receptor 1395 (Olr1395), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1395	Olr1395
Rattus norvegicus	RefSeq	GI_62656052-S	ILMN_278843	RGD1306484_PREDICTED	XM_001073356.1	XM_001073356.1		363594	109490686	XM_001073356.1	RGD1306484_predicted	XP_001073356.1	ILMN_1359925	0006100487	S	314	AGTTCTGGGTGAAGGTCAGCTATTTAATGAGGGCCCCCGACAGTGGCAGT				10q22	PREDICTED: Rattus norvegicus similar to growth and transformation-dependent protein (predicted) (RGD1306484_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929019-S	ILMN_262823	SCAMP5	NM_031726.1	NM_031726.1		65171	13929019	NM_031726.1	Scamp5	NP_113914.1	ILMN_1366179	0003990273	S	781	TTCATAAGTTCTACCGGGGCAGCGGGGGCAGTTTCAGCAAAGCCCAGGAG	8	-	61186733-61186766:61186767-61186782	8q24	Rattus norvegicus secretory carrier membrane protein 5 (Scamp5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_24308471-S	ILMN_55707	SLC1A7	NM_153723.1	NM_153723.1		266763	24308471	NM_153723.1	Slc1a7	NP_714945.1	ILMN_1364555	0001090253	S	2081	CCCAGTAGTCCCTTTATGACAACAAACACTCCCCAACAAAGTCCCAAGGG					Rattus norvegicus solute carrier family 1, member 7 (Slc1a7), mRNA.				H4-ASCT2	H4-ASCT2
Rattus norvegicus	RefSeq	GI_62664165-I	ILMN_68075	LIMS2_PREDICTED	XM_574116.1	XM_574116.1		361303	62664165	XM_574116.1	Lims2_predicted	XP_574116.1	ILMN_1375527	0006590025	S	168	ACACATCCCTTAAAAGTGTCTGGGGTAGAGCTGCAGGCTGGGTGGAGCCG				18p12	PREDICTED: Rattus norvegicus LIM and senescent cell antigen like domains 2 (predicted) (Lims2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651949-S	ILMN_267539	RGD1563625_PREDICTED	XM_578644.1	XM_578644.1		503124	62651949	XM_578644.1	RGD1563625_predicted	XP_578644.1	ILMN_1354647	0001230270	S	1059	GGATGACCCTAGAGACATTCCAGGAGTCCACTCCAGGCCAGAGAAGCTTA	7	-	15440667-15440716	7q12	PREDICTED: Rattus norvegicus similar to zinc finger and SCAN domain containing 4 (predicted) (RGD1563625_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654979-S	ILMN_266177	RGD1561425_PREDICTED	XM_001059953.1	XM_001059953.1		301378	109487041	XM_001059953.1	RGD1561425_predicted	XP_001059953.1	ILMN_1371794	0004590446	S	540	GCACAGCCCATCTACCTGAAGTGAAAGAACTGGTATGGGGGGAAGACCTG				9q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4832428D23 gene (predicted) (RGD1561425_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645733-S	ILMN_50263	LOC502656	XM_578150.1	XM_578150.1		502656	62645733	XM_578150.1	LOC502656	XP_578150.1	ILMN_1368452	0002260403	S	2399	TGTTACCAAGAAAAAGGCTGTGGGGGCCCGTTCAGAGCAGCGGACGAAGG					PREDICTED: Rattus norvegicus similar to Tripartite motif protein 44 (DIPB protein) (LOC502656), mRNA.					
Rattus norvegicus	RefSeq	GI_57527097-S	ILMN_298316	SPSB2	NM_001009660.1	NM_001009660.1		297592	57527097	NM_001009660.1	Spsb2	NP_001009660.1	ILMN_1360179	0000870487	S	1033	CCGTGGGGACAGGTGGAGAGGCACTGCTGGCCTAGACAACTTAAAAGCTG	4	+	160933165-160933214	4q42	Rattus norvegicus splA/ryanodine receptor domain and SOCS box containing 2 (Spsb2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]		MGC108858; Grcc9	MGC108858; Grcc9
Rattus norvegicus	RefSeq	GI_62653532-S	ILMN_57681	ZNF500_PREDICTED	XM_343376.2	XM_343376.2		363048	62653532	XM_343376.2	Znf500_predicted	XP_343377.1	ILMN_1351798	0000780672	S	732	TCCATGAGCCCTGTGGGGTAGTGGTGGATGTGTGTGAGTGACTTTCTAGG					PREDICTED: Rattus norvegicus zinc finger protein 500 (predicted) (Znf500_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643934-S	ILMN_274715	ZFP364_PREDICTED	XM_001063345.1	XM_001063345.1		362002	109467241	XM_001063345.1	Zfp364_predicted	XP_001063345.1	ILMN_1374838	0006620239	S	1558	AGAGAGCAATTCCAGTGGGAAGGAGAAACGACGGCCTGCACTGTCCACGT				2q34	PREDICTED: Rattus norvegicus zinc finger protein 364 (predicted) (Zfp364_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.23225	ILMN_161602	RN.23225	Rn.23225		Rn.23225		3813943	AI230056			ILMN_1530267	0004610026	S	143	GGTTGGTTGAGGAAGAAAAGATCAACACATCATACATAAATTCACAAAGT					EST226751 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone REMCQ41 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_62642193-S	ILMN_53115	SLC16A12_PREDICTED	XM_220057.4	XM_220057.4		309525	109460064	XM_220057.4	Slc16a12_predicted	XP_220057.4	ILMN_1352806	0003140528	S	545	CCATTGTAGACTGCATGACAATGCTCTGTGCTCCGCTTGGGAGTGTTGTC	1	-	238649943-238649963:238652945-238652973	1q52	PREDICTED: Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 12 (predicted) (Slc16a12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653061-S	ILMN_55103	SMARCD1_PREDICTED	XM_343332.3	XM_343332.3		363002	109481276	XM_343332.3	Smarcd1_predicted	XP_343333.2	ILMN_1370147	0005420181	S	1690	CTCCAAGGTGCAGCAGAGGCGGCAAGAATTAGAGCAAGCCCTGGGAATCC	7	+	138453382-138453388:138453492-138453534	7q36	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (predicted) (Smarcd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645088-S	ILMN_63995	LOC497769	XM_579520.1	XM_579520.1		497769	62645088	XM_579520.1	LOC497769	XP_579520.1	ILMN_1354667	0004850047	S	1645	CCTTGCAAGCTGAAGCATTACTGTGCTAGGATGGCTGTTTAGCCAAACTA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031623 (LOC497769), mRNA.					
Rattus norvegicus	RefSeq	GI_62644669-S	ILMN_65923	LOC497766	XM_579688.1	XM_579688.1		497766	62644669	XM_579688.1	LOC497766	XP_579688.1	ILMN_1372029	0001770494	S	7466	CCGCGAACTTCCAACTGCCTTCGACTACGTGGAGTTCACCCGCTCTCTCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_171983 (LOC497766), mRNA.					
Rattus norvegicus	RefSeq	GI_62646812-S	ILMN_59618	RGD1305697_PREDICTED	XM_231426.4	XM_231426.4		296846	109471704	XM_231426.4	RGD1305697_predicted	XP_231426.2	ILMN_1355646	0000460593	S	1723	ATCATCCAGACTGGGAGGAAGAAGAGAGCGAAGCTCCCCCAGTTACTCGG	4	-	28266662-28266711	4q13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25530 (predicted) (RGD1305697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34854300-A	ILMN_57929	AKAP9	XM_347223.3	XM_347223.3		246150	109471689	XM_347223.3	Akap9	XP_347224.3	ILMN_1376731	0001570717	S	3969	GCAAGGTGTCTGAGTATGAGAGGCAAGTCCAGGAGCTACAGAGCCTCGTG	4	-	26865791-26865840	4q13	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein (yotiao) 9 (Akap9), mRNA.	A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IPI]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62646777-S	ILMN_57929	AKAP9	XM_347223.3	XM_347223.3		246150	109471689	XM_347223.3	Akap9	XP_347224.3	ILMN_1349594	0002760575	S	6262	ACCTAGACTCCTGCCTGTGAGTGAGCACCAAACCAGAGAGGTTGAGCAGC	4	-	26816547-26816557:26820119-26820157	4q13	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein (yotiao) 9 (Akap9), mRNA.	A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IPI]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62646775	ILMN_57929	AKAP9	XM_347223.3	XM_347223.3		246150	109471689	XM_347223.3	Akap9	XP_347224.3	ILMN_1649991	0002120044	S	11784	GCTGCCGGATGCATAGCGTGCGGTGTCCTGCGCTTTTCTTACAAAGCTAC	4	-	26772613-26772662	4q13	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein (yotiao) 9 (Akap9), mRNA.	A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IPI]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62646849-S	ILMN_61511	RGD1308432_PREDICTED	XM_342642.3	XM_342642.3		362324	109471743	XM_342642.3	RGD1308432_predicted	XP_342643.2	ILMN_1349394	0000360672	S	3516	AGGAGCAGGCTGGTGAGATGGTTCAGCATATAAGAAGGGGGCTGGCTGCC	4	+	33289027-33289076	4q21	PREDICTED: Rattus norvegicus similar to cDNA sequence BC020002 (predicted) (RGD1308432_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656436-S	ILMN_66340	LOC287360	XM_213322.3	XM_213322.3		287360	62656436	XM_213322.3	LOC287360	XP_213322.3	ILMN_1374259	0004010435	S	209	GTCTGCACCGCATAGGGACACTAGCTACAGCGGAGCCACCTTACACAACT					PREDICTED: Rattus norvegicus similar to Ab2-162 (LOC287360), mRNA.					
Rattus norvegicus	RefSeq	GI_62654434-S	ILMN_56864	RGD1566388_PREDICTED	XM_236676.4	XM_236676.4		301042	109484053	XM_236676.4	RGD1566388_predicted	XP_236676.4	ILMN_1363181	0005340750	S	2407	CACCGTGTGCAGATGTTTGAGGCCAACGGCAGCTTCCTGTGCAAGTTCGG	8	-	118905928-118905977	8q32	PREDICTED: Rattus norvegicus similar to abnormal cell LINeage LIN-41, heterochronic gene (Lin41) (predicted) (RGD1566388_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643169-S	ILMN_57373	LOC499572	XM_574896.1	XM_574896.1		499572	62643169	XM_574896.1	LOC499572	XP_574896.1	ILMN_1368940	0003060133	S	627	ACTGTCACAGGAGCAGGCAGTAATGAGGTCCAGCTTGACAGTGCCTCACC					PREDICTED: Rattus norvegicus similar to LRRGT00031 (LOC499572), mRNA.					
Rattus norvegicus	RefSeq	GI_62718705-S	ILMN_55090	LOC503399	XM_578937.1	XM_578937.1		503399	62718705	XM_578937.1	LOC503399	XP_578937.1	ILMN_1363317	0001410164	S	317	CCTGTTTGCTACTGAGTCAGCTGAGCTCAGGCTACAGAAGAATCTTGCCT					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC503399), mRNA.					
Rattus norvegicus	RefSeq	GI_62644247-I	ILMN_66401	SLC35A3	XM_575025.1	XM_575025.1		310808	62644247	XM_575025.1	Slc35a3	XP_575025.1	ILMN_1375659	0004480195	S	229	CGAACAGGGAACGGCGTTTGCCGGGGCCGAGGCGGAAGCCGGATCCTTTG				2q41	PREDICTED: Rattus norvegicus solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 (Slc35a3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of nucleotide-sugars into, out of, within or between cells. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative [goid 15780] [evidence IEA]	Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative [goid 5338] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651237-S	ILMN_270463	LOC691052	XM_001076666.1	XM_001076666.1		691052	109478728	XM_001076666.1	LOC691052	XP_001076666.1	ILMN_1365598	0002100369	S	627	GGCGTCCAGTCTTGCTGTCATTCACTTTCTATCTCCTGTGGAGCTGACGG	6	+	133236807-133236856	6q32	PREDICTED: Rattus norvegicus similar to pre-mRNA splicing factor-like (LOC691052), mRNA.					
Rattus norvegicus	RefSeq	GI_47577734-S	ILMN_296236	OLR1260	NM_001000962.1	NM_001000962.1		405314	47577734	NM_001000962.1	Olr1260	NP_001000962.1	ILMN_1357018	0004200288	S	552	GCTGCAGCTCTCCTGCACCAGCACCTATGTCAATAAGGTAGCAATTTTCA	8	+	40959410-40959459	8q22	Rattus norvegicus olfactory receptor 1260 (Olr1260), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1260	Olr1260
Rattus norvegicus	RefSeq	GI_13929059-S	ILMN_60852	CEACAM1	NM_031755.2	NM_031755.2		81613	76496482	NM_031755.2	Ceacam1	NP_113943.1	ILMN_1362734	0004210113	S	1313	CACAGAGCACAAACCCTCAACCTCCAGCCACAATCTGGGTCCTTCTGACG	1	-	80745705-80745723:80746308-80746338	1q21	Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) (Ceacam1), transcript variant 4, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [pmid 11994468] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ccam1; Bgp; BGPR; CD66a	Ccam1; Bgp; BGPR; CD66a
Rattus norvegicus	RefSeq	GI_31543522-S	ILMN_302292	PTGDS	NM_013015.2	NM_013015.2		25526	31543522	NM_013015.2	Ptgds	NP_037147.1	ILMN_1372946	0003450022	S	617	GAAGTCAGTCACAGGTAACACATGGTGATGTGGCCTCAGGACTCCCGTGC	3	-	3632775-3632801:3633256-3633278	3p13	Rattus norvegicus prostaglandin D2 synthase (brain) (Ptgds), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence ISS]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IDA]; Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 45187] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity [goid 5501] [evidence IDA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	PH2DISO	PH2DISO
Rattus norvegicus	RefSeq	GI_62642336-S	ILMN_59270	SFRP5_PREDICTED	XM_219887.4	XM_219887.4		309377	109460150	XM_219887.4	Sfrp5_predicted	XP_219887.3	ILMN_1351546	0003850100	S	122	TTGCCTCCTACTTGGACGACCAGAGCAGCGGACGGCTGCAGGGAGCATCC	1	+	248652444-248652493	1q54	PREDICTED: Rattus norvegicus secreted frizzled-related sequence protein 5 (predicted) (Sfrp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640740-S	ILMN_52087	LOC361593	XM_346989.2	XM_346989.2		361593	62640740	XM_346989.2	LOC361593	XP_346990.2	ILMN_1372278	0001770097	S	430	TCCTGCAAGCCCCTCCTTTCTGAGAGACCACCACACGAGACACACAGAGG					PREDICTED: Rattus norvegicus hypothetical LOC361593 (LOC361593), mRNA.					
Rattus norvegicus	RefSeq	GI_62646942-S	ILMN_65845	LOC500062	XM_580044.1	XM_580044.1		500062	62646942	XM_580044.1	LOC500062	XP_580044.1	ILMN_1373202	0003990605	S	648	AACAGTGCTTCCAGCTCACGAGGGGGGCGAGGGGATTGTCTCTAGAACCT					PREDICTED: Rattus norvegicus LOC500062 (LOC500062), mRNA.					
Rattus norvegicus	RefSeq	GI_62649800-S	ILMN_48199	LOC502986	XM_578494.1	XM_578494.1		502986	62649800	XM_578494.1	LOC502986	XP_578494.1	ILMN_1369227	0000520692	S	2969	GGGAGAAGTGGGCCAGGAGTTCCGAGCAGATGCCCTAAAAAACCACCTGC					PREDICTED: Rattus norvegicus LOC502986 (LOC502986), mRNA.					
Rattus norvegicus	RefSeq	GI_62651212-S	ILMN_269256	PAPOLA_PREDICTED	XM_001069793.1	XM_001069793.1		314417	109479923	XM_001069793.1	Papola_predicted	XP_001069793.1	ILMN_1367021	0001580315	S	3795	GGACGCCAGAGGTTGATAAGGTTCCTCTTGTCGATCTGGGTAGAGCAGGC				6q32	PREDICTED: Rattus norvegicus poly (A) polymerase alpha (predicted), transcript variant 4 (Papola_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657620-S	ILMN_59385	RGD1307569_PREDICTED	XM_340966.3	XM_340966.3		360695	109492919	XM_340966.3	RGD1307569_predicted	XP_340967.3	ILMN_1358850	0005340288	S	1599	AATATGGATGAACAGTGGCCTAGACTCCTCGCTCCCCAGGAACATGGGCC	11	+	30891563-30891612	11q11	PREDICTED: Rattus norvegicus similar to Protein C21orf63 homolog precursor (predicted) (RGD1307569_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506470-S	ILMN_274870	CD5	NM_019295.1	NM_019295.1		54236	9506470	NM_019295.1	Cd5	NP_062168.1	ILMN_1357721	0004210372	S	2009	TACTCCGGGCTGCTGTGTTCAGGCCCATCCTCCCGACCTTCTAAGAGACA	1	-	213213329-213213378	1q43	Rattus norvegicus Cd5 molecule (Cd5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence NAS]; The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation [goid 31295] [evidence ISS]; Any process that modulates the frequency, rate or extent of lymphocyte proliferation [goid 50670] [evidence IPI]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IPI]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC114334	MGC114334
Rattus norvegicus	RefSeq	GI_62643157-S	ILMN_56837	LOC499569	XM_579981.1	XM_579981.1		499569	62643157	XM_579981.1	LOC499569	XP_579981.1	ILMN_1349645	0001400537	S	927	ACTGTCTGTTAATAGTCACGTCATGGTGGGCATGCTATGGGATCGCTGGG					PREDICTED: Rattus norvegicus LOC499569 (LOC499569), mRNA.					
Rattus norvegicus	RefSeq	GI_62643875	ILMN_69409	LOC310660	XM_227427.3	XM_227427.3		310660	62643875	XM_227427.3	LOC310660	XP_227427.3	ILMN_1650790	0002360541	S	4289	AATTTAGGGGTGGGGGTGGGATTGGTGGGGATGAGTCCTGTCAAGTGGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931408L03 (predicted) (LOC310660), mRNA.					
Rattus norvegicus	RefSeq	GI_62664599	ILMN_67361	RGD1565482_PREDICTED	XM_238020.4	XM_238020.4		291535	109506741	XM_238020.4	RGD1565482_predicted	XP_238020.4	ILMN_1650522	0001340692	S	375	CCGGGGACGCCAAAATAAACGAGCAGGTGAAAGGGAAAGACCAGGGGCAT	18	+	64965962-64966011	18q12.1	PREDICTED: Rattus norvegicus RGD1565482 (predicted) (RGD1565482_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653658-S	ILMN_64192	RGD1564444_PREDICTED	XM_576410.2	XM_576410.2		500996	109483460	XM_576410.2	RGD1564444_predicted	XP_576410.2	ILMN_1366725	0000110647	S	1217	AGGAGCAGCACACCATTTGGCCCACTCCTCACCAAGAGAACAGCCCTGAC	8	-	54379746-54379795	8q24	PREDICTED: Rattus norvegicus similar to layilin (predicted) (RGD1564444_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577628-S	ILMN_297957	OLR542	NM_001000566.1	NM_001000566.1		366105	47577628	NM_001000566.1	Olr542	NP_001000566.1	ILMN_1363722	0002360722	S	408	GACAAAGAGCATCTGCACTCAAATGGTTCTTGCAAGTTACTTGGCTGGTC	3	-	70573624-70573673	3q24	Rattus norvegicus olfactory receptor 542 (Olr542), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr542	Olr542
Rattus norvegicus	RefSeq	GI_62647376-S	ILMN_64088	LOC500158	XM_575510.1	XM_575510.1		500158	62647376	XM_575510.1	LOC500158	XP_575510.1	ILMN_1354756	0001410152	S	658	CTGAGCCTTGGGGACTTCTTTACATACCAGTCACACTGTGTGCCAGTGTC					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC500158), mRNA.					
Rattus norvegicus	RefSeq	GI_62655834-S	ILMN_292052	SYNGR3_PREDICTED	XM_001058239.1	XM_001058239.1		302975	109490325	XM_001058239.1	Syngr3_predicted	XP_001058239.1	ILMN_1371799	0006380484	S	1681	CTGAACAAGTCCCTCCCCAGTCTATCCCCTTTTAAGACCCAGACCAGGTG				10q12	PREDICTED: Rattus norvegicus synaptogyrin 3 (predicted) (Syngr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649599-S	ILMN_264110	LOC679271	XM_001055537.1	XM_001055537.1		679271	109477188	XM_001055537.1	LOC679271	XP_001055537.1	ILMN_1369264	0006130452	S	627	GTCTCTCGTGGGTGCTTCAGGAGGAGTCTATGCCTTGATGGGTGGCTATT					PREDICTED: Rattus norvegicus similar to rhomboid-related protein 2 (LOC679271), mRNA.					
Rattus norvegicus	RefSeq	GI_62650626-S	ILMN_69168	GNA14_PREDICTED	XM_234115.3	XM_234115.3		314046	62650626	XM_234115.3	Gna14_predicted	XP_234115.3	ILMN_1363684	0005670593	S	2141	CTCTCACGAAGATCCCACTCCTGGCGAGTCTGTGGAAAGGGAGGAGGAAG				6q16	PREDICTED: Rattus norvegicus guanine nucleotide binding protein, alpha 14 (predicted) (Gna14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651874-S	ILMN_63924	LOC299690	XM_234990.3	XM_234990.3		299690	62651874	XM_234990.3	LOC299690	XP_234990.3	ILMN_1355174	0003120685	S	2106	CATGGATCAGCATGGGCAGGTGGAAGAATTGGGAAGAGCCATTGGTGGTG					PREDICTED: Rattus norvegicus similar to expressed sequence AW539457 (LOC299690), mRNA.					
Rattus norvegicus	RefSeq	GI_16758831-S	ILMN_274427	MCF2L	NM_053951.1	NM_053951.1		117020	16758831	NM_053951.1	Mcf2l	NP_446403.1	ILMN_1368963	0007100465	S	4272	CTGGTAAGCCCAGGGGCTGTCCTCTTAGCCAGGGGGGCTGTCTCCTGTTA	16	-	81365132-81365181	16q12.5	Rattus norvegicus mcf.2 transforming sequence-like (Mcf2l), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]	Ost	Ost
Rattus norvegicus	RefSeq	GI_52345441-S	ILMN_276126	APLN	NM_031612.2	NM_031612.2		58812	52345441	NM_031612.2	Apln	NP_113800.1	ILMN_1351069	0006510538	S	2670	CGATTTGCCACAAGCTCACAAAAAGCCTCGCTATGCTTAAGGGCCAGTTC	X	-	134387633-134387682	Xq35	Rattus norvegicus apelin (Apln), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IMP]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that activates or increases the rate or extent of heat generation [goid 31652] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IMP]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of vasoconstriction [goid 45906] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IMP]; Any process that modulates the levels of body fluids [goid 50878] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of adrenocorticotropin hormone from a cell or group of cells [goid 51461] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of corticotropin-releasing hormone from a cell or group of cells [goid 51466] [evidence IMP]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with an apelin receptor [goid 31704] [evidence TAS]; Interacting selectively with an apelin receptor [goid 31704] [evidence IDA]	Apel	Apel
Rattus norvegicus	RefSeq	GI_62646717-S	ILMN_55181	RGD1564547_PREDICTED	XM_575343.2	XM_575343.2		499989	109471649	XM_575343.2	RGD1564547_predicted	XP_575343.1	ILMN_1368651	0006370014	S	246	GCAGGCACTGCAATATCCACTAAAGGGCATCCAGGGCTGCACTGAAGACT	4	-	19876308-19876357	4q12	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1564547_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577128-S	ILMN_280744	OLR329	NM_001000251.1	NM_001000251.1		293773	47577128	NM_001000251.1	Olr329	NP_001000251.1	ILMN_1351922	0001230722	S	764	GTACTGGCATCTTTGTCTATTTGCGATCCAGCTCTGGCGGTTCCTCCAGC	1	+	215129809-215129858	1q43	Rattus norvegicus olfactory receptor 329 (Olr329), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-215287476-215288417_ORF; Olr329	ratchr1-215287476-215288417_ORF; Olr329
Rattus norvegicus	RefSeq	GI_62644822-S	ILMN_50609	DDX31_PREDICTED	XM_242296.4	XM_242296.4		311835	109467969	XM_242296.4	Ddx31_predicted	XP_242296.3	ILMN_1353289	0004210136	S	3141	CCCTGGGGAAGCCTCACTGCTCTTCAGTGTCTGAGGTCTTTGTGTGTGAC	3	+	7914285-7914334	3p12	PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 (predicted) (Ddx31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577512-S	ILMN_269095	OLR678	NM_001000353.1	NM_001000353.1		295884	47577512	NM_001000353.1	Olr678	NP_001000353.1	ILMN_1356303	0006550520	S	407	GCAGGAGGCTCTGTGGTGTTTTGGTAGGCATAGCATGGTTTGGGGGATTA	3	-	73416851-73416900	3q24	Rattus norvegicus olfactory receptor 678 (Olr678), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr678; ratchr3-73313679-73312744_ORF	Olr678; ratchr3-73313679-73312744_ORF
Rattus norvegicus	RefSeq	GI_8394266-S	ILMN_290474	SHH	NM_017221.1	NM_017221.1		29499	8394266	NM_017221.1	Shh	NP_058917.1	ILMN_1373234	0003800050	S	1326	GGCACCATTCTCATCAACCGGGTGCTCGCCTCGTGCTACGCAGTCATCGA	4	+	2209268-2209317	4q11	Rattus norvegicus sonic hedgehog (Shh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system [goid 1841] [evidence IMP]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence IEA]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence IEA]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence ISS]; Any process that increases the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates, members of the Gli protein family are activated in this way. Activation of the Gli/Ci transcription factor is distinct from its stabilization, when proteolytic cleavage is inhibited [goid 7228] [evidence IEA]; Any process that increases the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates, members of the Gli protein family are activated in this way. Activation of the Gli/Ci transcription factor is distinct from its stabilization, when proteolytic cleavage is inhibited [goid 7228] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence IEP]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IEA]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence IEA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The removal of an internal amino acid sequence (an intein) from a protein during protein maturation; the excision of inteins is precise and the N- and C-terminal exteins are joined by a normal peptide bond. Protein splicing involves 4 nucleophilic displacements by the 3 conserved splice junction residues [goid 16539] [evidence IEA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IEA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence ISS]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened in granule cells that contributes to the regulation of proliferation of the cells [goid 21938] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened in granule cells that contributes to the regulation of proliferation of the cells [goid 21938] [evidence ISS]; The process that activates or increases the rate or extent of granule cell precursor proliferation [goid 21940] [evidence IEA]; The process that activates or increases the rate or extent of granule cell precursor proliferation [goid 21940] [evidence ISS]; The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops [goid 21978] [evidence IEA]; The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops [goid 21978] [evidence ISS]; Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 30162] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid [goid 30850] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence IEP]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32435] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32435] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus [goid 42307] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process by which the anatomical structures of the tongue are generated and organized. Morphogenesis pertains to the creation of form. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43587] [evidence IMP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of alpha-beta T cell differentiation [goid 46639] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of alpha-beta T cell differentiation [goid 46639] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; Development, taking place during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48568] [evidence IEA]; Development, taking place during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48568] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence ISS]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IEA]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence IMP]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence ISS]; The process whereby neuroepithelial cells of the neural tube give rise to Brgmann glial cells, specialized bipotential progenitors cells of the cerebellum. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 60020] [evidence IEA]; The process whereby neuroepithelial cells of the neural tube give rise to Brgmann glial cells, specialized bipotential progenitors cells of the cerebellum. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 60020] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence TAS]; Interacting selectively with the patched (ptc) protein, a receptor for hedgehog proteins [goid 5113] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with laminin-1, a glycoprotein trimer with the subunit composition alpha1, beta1, gamma1 [goid 43237] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661302	ILMN_287932	TTC5	NM_001013131.1	NM_001013131.1		305837	61557040	NM_001013131.1	Ttc5	NP_001013149.1	ILMN_1650921	0003140706	S	1262	CTGGTGGTGAATGGAAAGCCACAGAACTCCAGCAGCCAAGCCTCTGCCAC	15	-	26749877-26749926	15p14	Rattus norvegicus tetratricopeptide repeat domain 5 (Ttc5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC108914	MGC108914
Rattus norvegicus	RefSeq	GI_62655073-S	ILMN_270975	LOC682855	XM_001063410.1	XM_001063410.1		682855	109487096	XM_001063410.1	LOC682855	XP_001063410.1	ILMN_1374716	0006980402	S	377	CCAGACTCCAGGCTCCTAAAAAGTTTGCAGAGTTTGTTCTTGGAGCGAGC					PREDICTED: Rattus norvegicus similar to Protein KIAA0286 (LOC682855), mRNA.					
Rattus norvegicus	RefSeq	GI_62665738-S	ILMN_290947	PNPLA1_PREDICTED	XM_001078563.1	XM_001078563.1		361812	109509854	XM_001078563.1	Pnpla1_predicted	XP_001078563.1	ILMN_1372715	0003360168	S	1109	TGAGGCCCGCTGACCCCAGTGACAGTTGCCCAGTGAATGTTCAAACTCCA				20p12	PREDICTED: Rattus norvegicus patatin-like phospholipase domain containing 1 (predicted) (Pnpla1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654340-S	ILMN_52211	PLXNB1_PREDICTED	XM_236640.4	XM_236640.4		316009	109483969	XM_236640.4	Plxnb1_predicted	XP_236640.3	ILMN_1374063	0005080722	S	7308	GCACAATATGGCTCAGGGAGAGTTGGGGCCTGATGTGGGGTTCTGTCCTC	8	+	114132799-114132848	8q32	PREDICTED: Rattus norvegicus plexin B1 (predicted) (Plxnb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641067-S	ILMN_68018	UBQLN3_PREDICTED	XM_219039.4	XM_219039.4		308905	109459171	XM_219039.4	Ubqln3_predicted	XP_219039.2	ILMN_1366147	0002120086	S	1923	AGCTAGTACCAATCCCCAGCAGCTACAACTGGAGGCTCACTTCCGGGTAC	1	-	161974796-161974845	1q32	PREDICTED: Rattus norvegicus ubiquilin 3 (predicted) (Ubqln3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641691-S	ILMN_270901	UNC93B1	XM_001069535.1	XM_001069535.1		361689	109463298	XM_001069535.1	Unc93b1	XP_001069535.1	ILMN_1353991	0002060446	S	1982	CTCAGAGCCTGGGGACACCTGGGACTTCCTCCAAAGAGATAAGGGTCACC				1q42	PREDICTED: Rattus norvegicus unc-93 homolog B1 (C. elegans) (Unc93b1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62662718-S	ILMN_54753	LOC306504	XM_224905.3	XM_224905.3		306504	62662718	XM_224905.3	LOC306504	XP_224905.3	ILMN_1369350	0000070097	S	1503	GGCGCTATTAGCAGAGGGTTGGTGTTAAAGCAGACAGTTTGCATGCGGCG				16q12.2	PREDICTED: Rattus norvegicus similar to 6430573F11Rik protein (predicted) (LOC306504), mRNA.					
Rattus norvegicus	RefSeq	GI_47087096-S	ILMN_298771	VARS2	NM_213563.1	NM_213563.1		309596	47087096	NM_213563.1	Vars2	NP_998728.1	ILMN_1365207	0006100397	S	3850	GTGACAGGAGCAGAGTTCCAAACGTGCTAACTTCAACGGGCAGGCGCTCC	20	+	3238660-3238709	20p12	Rattus norvegicus valyl-tRNA synthetase 2, mitochondrial (putative) (Vars2), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6438] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-tRNA(Val) [goid 4832] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	KIAA1885	KIAA1885
Rattus norvegicus	RefSeq	GI_13928707-S	ILMN_70163	NEU1	NM_031522.2	NM_031522.2		24591	71896601	NM_031522.2	Neu1	NP_113710.2	ILMN_1354078	0002120731	S	1142	AGCGGCTACTCATCCCTGACAGCCCTGGAAAACAGCACGGACGGGAAGAA	20	-	3999741-3999790	20p12	Rattus norvegicus sialidase 1 (lysosomal sialidase) (Neu1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates [goid 4308] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645058-S	ILMN_266747	LRP1B_PREDICTED	XM_001055209.1	XM_001055209.1		311926	109469831	XM_001055209.1	Lrp1b_predicted	XP_001055209.1	ILMN_1349424	0002260010	S	13921	GAGGCCAGCCCCAAAGAGCAGCAAATCTGAGCATATCAGCACAAGGAGCA				3q12	PREDICTED: Rattus norvegicus low density lipoprotein-related protein 1B (deleted in tumors) (predicted) (Lrp1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660723-S	ILMN_279987	LOC289740	XM_001062102.1	XM_001062102.1		289740	109499937	XM_001062102.1	LOC289740	XP_001062102.1	ILMN_1364114	0006380026	S	777	CCCACCCAAGATTGAAAGTCAAGCCCAAGCAGAGATGAAGGTCAGCGAGG	14	+	84629416-84629425:84629520-84629559	14q21	PREDICTED: Rattus norvegicus similar to PES1 protein (LOC289740), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]	Progression through metaphase, the stage of mitosis at which chromosomes are firmly attached to the mitotic spindle at its equator but have not yet segregated to opposite poles [goid 89] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly the nucleolus [goid 7000] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_6981691-S	ILMN_290798	UCP1	NM_012682.1	NM_012682.1		24860	6981691	NM_012682.1	Ucp1	NP_036814.1	ILMN_1371571	0006400176	S	1093	GCACCACATAGGCGACTTGGAGAAAGGGATGCTAAACACCATTGGGCTCC	19	-	26527602-26527640:26527641-26527651	19q11	Rattus norvegicus uncoupling protein 1 (mitochondrial, proton carrier) (Ucp1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence TAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IDA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IDA]; Any process that activates or increases frequency, rate or extent of chemical reactions and pathways in multicellular organisms that occur at the tissue, organ, or organismal level [goid 44253] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of protons from mitochondrial intermembrane space into mitochondrial matrix, dissipating the proton gradient across the mitochondrial inner membrane established by the electron transport chain during the oxidative phosphorylation (proton leak). Proton leak uncouples the processes of electron transport/proton generation and ATP synthesis [goid 17077] [evidence IDA]; Catalysis of the transfer of protons from mitochondrial intermembrane space into mitochondrial matrix, dissipating the proton gradient across the mitochondrial inner membrane established by the electron transport chain during the oxidative phosphorylation (proton leak). Proton leak uncouples the processes of electron transport/proton generation and ATP synthesis [goid 17077] [evidence ISS]; Catalysis of the transfer of protons from mitochondrial intermembrane space into mitochondrial matrix, dissipating the proton gradient across the mitochondrial inner membrane established by the electron transport chain during the oxidative phosphorylation (proton leak). Proton leak uncouples the processes of electron transport/proton generation and ATP synthesis [goid 17077] [evidence IEA]	Ucp; MGC108736; Uncp; Ucpa	Ucp; MGC108736; Uncp; Ucpa
Rattus norvegicus	RefSeq	GI_40538856-S	ILMN_285791	PIK3C3	NM_022958.2	NM_022958.2		65052	40538856	NM_022958.2	Pik3c3	NP_075247.1	ILMN_1349377	0005690446	S	2787	AGGTGTCCAGGAGTTACGGCATGCTCAAGCTTTGTGCCAGTGGACGCCAC	18	+	22579340-22579389	18p12	Rattus norvegicus phosphoinositide-3-kinase, class 3 (Pik3c3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IDA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IDA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394428-S	ILMN_264270	PHLDA1	NM_017180.1	NM_017180.1		29380	8394428	NM_017180.1	Phlda1	NP_058876.1	ILMN_1371618	0006620373	S	1192	AACTCTGCCTGAAGAGGGCGGCACCCGGGCCACTCAAGGTTTTGAGGACT	7	+	50542224-50542232:50542233-50542258:50542653-50542667	7q21	Rattus norvegicus pleckstrin homology-like domain, family A, member 1 (Phlda1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The chemical reactions and pathways resulting in the formation of FasL (CD95), an antigen originally found to be expressed on the cell surface of activated human T-lymphocytes and B-lymphocytes and a variety of malignant human lymphoid cell lines [goid 45210] [evidence ISS]; The chemical reactions and pathways resulting in the formation of FasL (CD95), an antigen originally found to be expressed on the cell surface of activated human T-lymphocytes and B-lymphocytes and a variety of malignant human lymphoid cell lines [goid 45210] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Tdag	Tdag
Rattus norvegicus	RefSeq	GI_8394372-S	ILMN_287041	STAT5A	NM_017064.1	NM_017064.1		24918	8394372	NM_017064.1	Stat5a	NP_058760.1	ILMN_1374260	0004670592	S	3308	TGCAGGCAACACAGTGGTATGTGAGGGGGGAGGCTCAACCTGGTCCACTC	10	+	89819425-89819474	10q32.1	Rattus norvegicus signal transducer and activator of transcription 5A (Stat5a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence IEA]; The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IDA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IDA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 19218] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 19218] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence IEA]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients [goid 31667] [evidence IEP]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation [goid 45588] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of lymphocyte differentiation [goid 45621] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence IEA]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion [goid 46543] [evidence IEA]; The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion [goid 46543] [evidence ISS]; The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion [goid 46544] [evidence IEA]; The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion [goid 46544] [evidence ISS]; The process whose specific outcome is the progression of Peyer's patches over time, from their formation to the mature structure. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes [goid 48541] [evidence ISS]; The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs [goid 48609] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence IDA]; The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 19218] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion [goid 46543] [evidence IEA]; The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion [goid 46544] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IEA]; The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 19218] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion [goid 46543] [evidence IEA]; The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion [goid 46544] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Stat5	Stat5
Rattus norvegicus	RefSeq	GI_62656855-S	ILMN_50459	LOC303466	XM_220882.3	XM_220882.3		303466	62656855	XM_220882.3	LOC303466	XP_220882.3	ILMN_1351073	0003850180	S	3341	AGATGCACACTCCATCGCGCCCCTAGAGAGCATTTGGGTCACCTCCTTGG				10q31	PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase D (LOC303466), mRNA.					
Rattus norvegicus	RefSeq	GI_38454225-S	ILMN_277641	TPD52L2	NM_198744.1	NM_198744.1		296480	38454225	NM_198744.1	Tpd52l2	NP_942039.1	ILMN_1364434	0001660673	S	1076	GGGTCTGAGGAGTACTGAACAGGAGCCCATGCTCCCTTTGAAGGTCTCAC	3	+	170650071-170650120	3q43	Rattus norvegicus tumor protein D52-like 2 (Tpd52l2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC73020	MGC73020
Rattus norvegicus	RefSeq	GI_62642509-S	ILMN_67832	LOC292128	XM_238062.2	XM_238062.2		292128	62642509	XM_238062.2	LOC292128	XP_238062.1	ILMN_1362017	0003170021	S	104	CGGACCCCCAACCCACCCGCAAGGCACACTGTCAGAGATTAGAGCACAAA					PREDICTED: Rattus norvegicus hypothetical LOC292128 (LOC292128), mRNA.					
Rattus norvegicus	RefSeq	GI_62650781-S	ILMN_271110	L2HGDH_PREDICTED	XM_001080412.1	XM_001080412.1		314196	109479477	XM_001080412.1	L2hgdh_predicted	XP_001080412.1	ILMN_1352595	0001780450	S	1214	TCCTGAAATCACCACCAACGATGTACTTCGAGGCCCTGCTGGAGTGCGAG				6q24	PREDICTED: Rattus norvegicus L-2-hydroxyglutarate dehydrogenase (predicted) (L2hgdh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641877-S	ILMN_63014	VPS37C_PREDICTED	XM_217901.4	XM_217901.4		308178	109459883	XM_217901.4	Vps37c_predicted	XP_217901.4	ILMN_1368448	0001580647	S	963	ACCCCTTAGTGGGGGGCCAAACTCCTGGTCCTGGTTATCCTCAACAGTCC	1	+	213208682-213208731	1q43	PREDICTED: Rattus norvegicus vacuolar protein sorting 37C (yeast) (predicted) (Vps37c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663478-S	ILMN_302682	SERPINB1A	NM_001031642.1	NM_001031642.1		291091	72255514	NM_001031642.1	Serpinb1a	NP_001026812.1	ILMN_1352285	0002650731	S	1026	CTGCCACGGCAGGCATCGCTACATTCTGCATGTTGCTGCCCGAAGAAGAA	17	+	37959044-37959093	17p12	Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B, member 1a (Serpinb1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	MGC112650	MGC112650
Rattus norvegicus	RefSeq	GI_62662954-S	ILMN_59399	GRTP1_PREDICTED	XM_341463.2	XM_341463.2		361180	62662954	XM_341463.2	Grtp1_predicted	XP_341464.2	ILMN_1372041	0000110400	S	1449	CTCCCTGTGGAGACGGTGCTACGAATCTGGGACTGTTTGTTCAACGAAGG					PREDICTED: Rattus norvegicus GH regulated TBC protein 1 (predicted) (Grtp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653827-S	ILMN_275232	LOC686963	XM_001076515.1	XM_001076515.1		686963	109484888	XM_001076515.1	LOC686963	XP_001076515.1	ILMN_1361888	0004230338	S	125	CAGGGCTACGATGAGGCACTGGTGGACGAGGCCATGGAGATGTTCCAGTT					PREDICTED: Rattus norvegicus similar to ubiquitin-associated protein 1 (predicted) (LOC686963), mRNA.					
Rattus norvegicus	RefSeq	GI_55742724-S	ILMN_271677	DLST	NM_001006981.1	NM_001006981.1		299201	55742724	NM_001006981.1	Dlst	NP_001006982.1	ILMN_1351280	0003940128	S	2360	CCTCTGGTGAAGGACACAGATAAGGGGAGGATGGACTGTGGCGGGAACCA	6	+	109180132-109180181	6q31	Rattus norvegicus dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) (Dlst), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2) [goid 45252] [evidence IEA]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: succinyl-CoA + dihydrolipoamide = CoA + S-succinyldihydrolipoamide [goid 4149] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectively with lipoic acid, 1,2-dithiolane-3-pentanoic acid [goid 31405] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IPI]	MGC95077	MGC95077
Rattus norvegicus	RefSeq	GI_40254786-S	ILMN_289784	PPP1CB	NM_013065.2	NM_013065.2		25594	40254786	NM_013065.2	Ppp1cb	NP_037197.1	ILMN_1368894	0001240441	S	2278	CACTGGTCAGTGGGACATTGTCAGCTCTGAGTATTGGGTGCTTCACTGTC	6	-	24068144-24068193	6q13	Rattus norvegicus protein phosphatase 1, catalytic subunit, beta isoform (Ppp1cb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence EXP]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11177913-S	ILMN_302546	CCR2	NM_021866.1	NM_021866.1		60463	11177913	NM_021866.1	Ccr2	NP_068638.1	ILMN_1350137	0001580722	S	1049	GGGAGACAGCAGACCGAGTGAGCTCAACATTTACCCCTTCTACTGGGGAG	8	+	128893832-128893881	8q32	Rattus norvegicus chemokine (C-C motif) receptor 2 (Ccr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEP]; An inflammatory response to an antigenic stimulus, which can be include any number of T cell or B cell epitopes [goid 2437] [evidence IEP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; An immune response mediated through a body fluid [goid 6959] [evidence ISS]; An immune response mediated through a body fluid [goid 6959] [evidence IEA]; A defense response that is mediated by cells [goid 6968] [evidence ISS]; A defense response that is mediated by cells [goid 6968] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IMP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with chemokines, small chemoattractant molecules normally used to stimulate leukocytes, to initiate a change in cell activity [goid 4950] [evidence IEP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IMP]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence ISS]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence IEA]; Interacting selectively with a C-C chemokine; C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 19957] [evidence IEP]; Interacting selectively with a C-C chemokine; C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 19957] [evidence IMP]; Interacting selectively with a CCR2 chemokine receptor [goid 31727] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62717770-S	ILMN_69585	LOC367372	XM_346110.2	XM_346110.2		367372	62717770	XM_346110.2	LOC367372	XP_346111.2	ILMN_1353879	0006350204	S	215	CAACTCCCTGAACAGTGAGCCTTTGTGGGACAAGTGTCTATACAGCGCCC					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC367372), mRNA.					
Rattus norvegicus	RefSeq	GI_62660329-S	ILMN_63318	LOC498347	XM_573580.1	XM_573580.1		498347	62660329	XM_573580.1	LOC498347	XP_573580.1	ILMN_1354573	0005570619	S	111	CAGGAGGTCATCCAGGAAAAGAATCAAGACTGGGATGGCAAGCTAAGGCC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (LOC498347), mRNA.					
Rattus norvegicus	RefSeq	GI_51036664-S	ILMN_283033	CTSK	NM_031560.2	NM_031560.2		29175	51036664	NM_031560.2	Ctsk	NP_113748.1	ILMN_1367924	0001090239	S	1187	CTGGGCATTTTCTGAGAGTTGTGGCCTCTGTGCTGATAGACGCTGGAGTC	2	+	190405438-190405487	2q34	Rattus norvegicus cathepsin K (Ctsk), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]	The formation of bone in which osteoblasts secrete a collage-proteoglycan matrix that binds calcium salts and becomes calcified. Intramembranous ossification is the way flat bones and the shell of a turtle are formed [goid 1957] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IMP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62652999-S	ILMN_51737	RGD1565798_PREDICTED	XM_576332.2	XM_576332.2		500923	109481247	XM_576332.2	RGD1565798_predicted	XP_576332.1	ILMN_1351387	0005860100	S	35	CTCCCGCTGCACTGCGTTCGCTCCGCGCTGTCAGGCTAGCGCCACTGTCT	7	-	136156100-136156149	7q36	PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (predicted) (RGD1565798_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34868220-S	ILMN_51737	RGD1565798_PREDICTED	XM_576332.2	XM_576332.2		500923	109481247	XM_576332.2	RGD1565798_predicted	XP_576332.1	ILMN_1350067	0005270176	S	425	GGGTAAAGCCTTTTATGACTGGAGCTGCAGAGAAAATTAAGCGCATCCTA	7	-	136155710-136155759	7q36	PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (predicted) (RGD1565798_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657886-S	ILMN_59464	LOC363782	XM_344019.2	XM_344019.2		363782	62657886	XM_344019.2	LOC363782	XP_344020.2	ILMN_1374951	0002230671	S	1333	AGAAGGCCGAATCTCATAGCTGCAAGAAGGCCGCGGTTAGACGTGTTTCC				11q21	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC363782), mRNA.					
Rattus norvegicus	RefSeq	GI_62657262-S	ILMN_263182	WIPI1_PREDICTED	XM_001081633.1	XM_001081633.1		303630	109492124	XM_001081633.1	Wipi1_predicted	XP_001081633.1	ILMN_1369372	0004010195	S	1639	AGCCTTGGCTGCCAGTGGGCAAGGAGAATGCTGGAGTCACACAATGCTAT				10q32.1	PREDICTED: Rattus norvegicus WD repeat domain, phosphoinositide interacting 1 (predicted), transcript variant 2 (Wipi1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651469-S	ILMN_65600	LOC314468	XM_234560.3	XM_234560.3		314468	62651469	XM_234560.3	LOC314468	XP_234560.3	ILMN_1360943	0001450458	S	286	CCACCTCTCAGGGGGACACAGAAGATGCCGTCCACCGGTCCATATTTTCC					PREDICTED: Rattus norvegicus similar to heat shock protein 8 (LOC314468), mRNA.					
Rattus norvegicus	RefSeq	GI_62662645-S	ILMN_50131	RGD1559427_PREDICTED	XM_573911.2	XM_573911.2		498630	109503365	XM_573911.2	RGD1559427_predicted	XP_573911.2	ILMN_1357637	0006450632	S	3844	GGAGCCTCGACAGGTGCAGTCCTTCAGGGAGAAGATTGCCTACTTCACAC	16	+	47618451-47618477:47621616-47621638	16q11	PREDICTED: Rattus norvegicus similar to BH3-only member B protein (predicted) (RGD1559427_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641842-S	ILMN_285982	LOC686274	XM_001073234.1	XM_001073234.1		686274	109463479	XM_001073234.1	LOC686274	XP_001073234.1	ILMN_1370874	0005570605	S	223	GGAGCGCAAACGTGAGGGCAGCCACAAGGAACCAGAAAAGGGCTGACTAC					PREDICTED: Rattus norvegicus hypothetical protein LOC686274 (LOC686274), mRNA.					
Rattus norvegicus	RefSeq	GI_62667087-S	ILMN_65808	LOC302396	XM_217568.3	XM_217568.3		302396	62667087	XM_217568.3	LOC302396	XP_217568.2	ILMN_1353932	0003130520	S	7229	GAGAGTGACTTTGAGGACTGAGCAACTAGACCAAGGCAGAGATGCTTACC				Xq31	PREDICTED: Rattus norvegicus similar to KIAA2022 protein (LOC302396), mRNA.					
Rattus norvegicus	RefSeq	GI_62656291-S	ILMN_280078	ALOX12B	NM_001039377.1	NM_001039377.1		287425	86439960	NM_001039377.1	Alox12b	NP_001034466.1	ILMN_1357449	0004200722	S	1419	CCTCATTCCTCACACTCGCTACAACGTCCAGATCAACAGCATTGGGCGGG	10	+	55926216-55926265	10q24	Rattus norvegicus arachidonate 12-lipoxygenase, 12R type (Alox12b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,14Z)-(12S)-12-hydroperoxyicosa-5,8,10,14-tetraenoate [goid 4052] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: linoleate + O2 = (9Z,11E)-(13S)-13-hydroperoxyoctadeca-9,11-dienoate [goid 16165] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758619-S	ILMN_279967	AKR1B7	NM_053781.1	NM_053781.1		116463	16758619	NM_053781.1	Akr1b7	NP_446233.1	ILMN_1354362	0004760524	S	1042	AACTGGAGGGCCTGTGGCCTGTTTGTCACAAGCGATGAAGAGGACTTTCC	4	+	61803583-61803609:61806565-61806587	4q22	Rattus norvegicus aldo-keto reductase family 1, member B7 (Akr1b7), mRNA.			Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence TAS]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence TAS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MVDP; Avdp	MVDP; Avdp
Rattus norvegicus	RefSeq	GI_8393806-S	ILMN_302779	MYH7	NM_017240.1	NM_017240.1		29557	8393806	NM_017240.1	Myh7	NP_058936.1	ILMN_1373879	0001240270	S	5835	CCCTAAGGATGCCTGTGAAGCCCTGAGACCTGGAGCCTTTGAAACAGCAC	15	-	33072966-33073015	15p13	Rattus norvegicus myosin, heavy chain 7, cardiac muscle, beta (Myh7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filament of myosin found in a muscle cell of any type [goid 5859] [evidence IDA]; Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IMP]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IEP]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IMP]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated [goid 30049] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	Myhcb	Myhcb
Rattus norvegicus	RefSeq	GI_56090414-S	ILMN_274791	VPS26A	NM_001007740.1	NM_001007740.1		361846	56090414	NM_001007740.1	Vps26a	NP_001007741.1	ILMN_1375101	0004920609	S	1061	TGTAAGCAAGCGGGACAGAGCAACAAGTGCAAGAACCAGGCCGAGAGGGG	20	-	29709248-29709293:29709294-29709297	20q11	Rattus norvegicus vacuolar protein sorting 26 homolog A (S. pombe) (Vps26a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A conserved multimeric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. For example, the budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p [goid 30904] [evidence IEA]	The directed movement of substances into, out of or within a vacuole [goid 7034] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94168	MGC94168
Rattus norvegicus	RefSeq	GI_62717826-S	ILMN_50353	LOC301893	XM_229375.3	XM_229375.3		301893	62717826	XM_229375.3	LOC301893	XP_229375.3	ILMN_1353064	0003120022	S	1812	CTGGCAAAAGCCAAAGGAGTATTCACTGACTGTCAGCAGGTAAAGCTTCA					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC301893), mRNA.					
Rattus norvegicus	RefSeq	GI_62664454	ILMN_52148	LOC502162	XM_577619.1	XM_577619.1		502162	62664454	XM_577619.1	LOC502162	XP_577619.1	ILMN_1649967	0003830593	S	329	GATATTTTGCCACCCCCCTACAGGTGTTGGACCTGGTTTTTGTGAGGTGA					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502162), mRNA.					
Rattus norvegicus	RefSeq	GI_62652301-S	ILMN_62592	LOC500851	XM_576245.1	XM_576245.1		500851	62652301	XM_576245.1	LOC500851	XP_576245.1	ILMN_1349965	0004590315	S	1036	CCTTCTTTAAAAGGGAAACAAGAATACCCTTGGCAGGGAAGAGAGAGGCA					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC500851), mRNA.					
Rattus norvegicus	RefSeq	GI_62650581-S	ILMN_66872	PIK3CG_PREDICTED	XM_234053.4	XM_234053.4		298947	109478120	XM_234053.4	Pik3cg_predicted	XP_234053.3	ILMN_1351492	0000130162	S	3208	CGGGATGCCCTCATGGTGGGGAGAAGCGAGGAGGACGCCAAGAAGTATTT	6	-	50445095-50445144	6q16	PREDICTED: Rattus norvegicus phosphoinositide-3-kinase, catalytic, gamma polypeptide (predicted) (Pik3cg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018569-S	ILMN_291549	PLEKHA4	NM_199101.1	NM_199101.1		308584	40018569	NM_199101.1	Plekha4	NP_954532.1	ILMN_1370711	0000510286	S	2442	CTCACAAGGCTAACTCGGCTACCACAGGGTTCTCATGCCAAGGGAGTGGG	1	+	96024194-96024243	1q22	Rattus norvegicus pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 (Plekha4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with a lipid [goid 8289] [evidence IEA]	MGC72599	MGC72599
Rattus norvegicus	RefSeq	GI_62661550-S	ILMN_272555	RGD1306762_PREDICTED	XM_001063156.1	XM_001063156.1		290279	109502518	XM_001063156.1	RGD1306762_predicted	XP_001063156.1	ILMN_1370877	0006110093	S	684	GGCCAATGAGTTCCGCTGTTATACGAACTATGACTCCGGGCTGGACTGTG				15p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510005D08 (predicted) (RGD1306762_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646708-S	ILMN_54707	SEMA3E_PREDICTED	XM_231354.4	XM_231354.4		296789	109471629	XM_231354.4	Sema3e_predicted	XP_231354.4	ILMN_1372160	0000870037	S	2879	GTGGAAGTATGCCAACCCCCAGGAAAAGAGGCTTCGCTCCAAAGCTGAGC	4	-	16525186-16525235	4q12	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E (predicted) (Sema3e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036679-S	ILMN_274530	SLC29A3	NM_181639.3	NM_181639.3		353307	51036679	NM_181639.3	Slc29a3	NP_853670.2	ILMN_1349744	0006770446	S	1564	CTGGACAGGGTGAGCCGAGGTCTCATGGCGTTAAGCAAGGGGTTGGTGTT	20	-	28042095-28042144	20q11	Rattus norvegicus solute carrier family 29 (nucleoside transporters), member 3 (Slc29a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence IMP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IMP]; Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IEA]; Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IEA]	Ent3	Ent3
Rattus norvegicus	RefSeq	GI_13591982-S	ILMN_300043	LUM	NM_031050.1	NM_031050.1		81682	13591982	NM_031050.1	Lum	NP_112312.1	ILMN_1352701	0005900142	S	1363	GCCTTTTTACTGATTGCTTGGAAGTCCACCAGGTTTCTATGGTTCCTCAC	7	+	35089919-35089968	7q13	Rattus norvegicus lumican (Lum), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; Any collagen polymer in which collagen triple helices associate to form fibrils [goid 5583] [evidence IEA]; Any collagen polymer in which collagen triple helices associate to form fibrils [goid 5583] [evidence ISS]		Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence IEA]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663919-S	ILMN_293870	TRDMT1	NM_001031643.1	NM_001031643.1		291324	72255516	NM_001031643.1	Trdmt1	NP_001026813.1	ILMN_1365929	0001980128	S	1091	GGATTTCCTCCAGAATTTGGGTTTCCTGAGAAGACAACGGTGAAGCAGCG	17	-	87792012-87792043:87796874-87796891	17q12.3	Rattus norvegicus tRNA aspartic acid methyltransferase 1 (Trdmt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence IEA]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 5-methylcytosine [goid 16428] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112666	MGC112666
Rattus norvegicus	RefSeq	GI_62653767-S	ILMN_269429	BBS4_PREDICTED	XM_001074984.1	XM_001074984.1		300754	109484818	XM_001074984.1	Bbs4_predicted	XP_001074984.1	ILMN_1364092	0002340494	S	1433	GGACCAAGCCAGTCAAAGATCCCAAGTCAAAGCACCGGACCAATTCAGGC				8q24	PREDICTED: Rattus norvegicus Bardet-Biedl syndrome 4 homolog (human) (predicted) (Bbs4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42538979-S	ILMN_289446	GPN3	NM_201991.1	NM_201991.1		360810	42538979	NM_201991.1	Gpn3	NP_973720.1	ILMN_1366537	0002690110	S	889	GAACGGCAGAATGAGTGAGGTTGACTACGAAGCTCCTATCCCGTTGTGGC	12	-	35384246-35384278:35384279-35384295	12q16	Rattus norvegicus GPN-loop GTPase 3 (Gpn3), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393563-S	ILMN_290483	HRH1	NM_017018.1	NM_017018.1		24448	8393563	NM_017018.1	Hrh1	NP_058714.1	ILMN_1353362	0004760731	S	1355	CCATTTGGCTGGGCTACATCAACTCCACGCTGAACCCCCTCATCTACCCC	4	+	150432593-150432642	4q42	Rattus norvegicus histamine receptor H 1 (Hrh1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of guanylyl cyclase and a subsequent increase in the concentration of cyclic GMP [goid 7199] [evidence TAS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence TAS]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]	Hisr	Hisr
Rattus norvegicus	RefSeq	GI_62660179-S	ILMN_289141	FRAS1_PREDICTED	XM_001062222.1	XM_001062222.1		289486	109500287	XM_001062222.1	Fras1_predicted	XP_001062222.1	ILMN_1366342	0002810048	S	9197	CTGCAGTTCTGAGCGTCAAGGTCATCCGCAGAGGCGATCAAAACAGGACC				14p22	PREDICTED: Rattus norvegicus Fraser syndrome 1 homolog (human) (predicted), transcript variant 1 (Fras1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656679-S	ILMN_291571	LOC689039	XM_001069291.1	XM_001069291.1		689039	109488695	XM_001069291.1	LOC689039	XP_001069291.1	ILMN_1366214	0002630338	S	437	GCAAGACCCTGCACAGCCACCCGGCCTACGTGGAGCACTGTATTTTTGAG	10	+	71524971-71525020	10q26	PREDICTED: Rattus norvegicus hypothetical protein LOC689039 (LOC689039), mRNA.					
Rattus norvegicus	RefSeq	GI_18426841-S	ILMN_284239	SLC36A1	NM_130415.1	NM_130415.1		155205	18426841	NM_130415.1	Slc36a1	NP_569099.1	ILMN_1351166	0003520722	S	1689	CTGGGCACTCCTCTGGCATTGGACCCTTGGGTAACCTGGGCTACATGAGA	10	+	40638977-40639026	10q22	Rattus norvegicus solute carrier family 36 (proton/amino acid symporter), member 1 (Slc36a1), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of L-alanine, the levorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 15808] [evidence ISS]; The directed movement of L-alanine, the levorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 15808] [evidence IEA]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence ISS]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence IEA]; The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells [goid 15824] [evidence ISS]; The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells [goid 15824] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IDA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence ISS]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + H+(out) = amino acid(in) + H+(in) [goid 5280] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + H+(out) = amino acid(in) + H+(in) [goid 5280] [evidence IEA]; Catalysis of the transfer of L-tyrosine from one side of a membrane to the other. L-tyrosine is 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 5302] [evidence ISS]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IDA]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence NAS]; Catalysis of the transfer of L-alanine from one side of a membrane to the other. L-alanine, the levorotatory isomer of 2-aminopropanoic acid [goid 15180] [evidence ISS]; Catalysis of the transfer of L-alanine from one side of a membrane to the other. L-alanine, the levorotatory isomer of 2-aminopropanoic acid [goid 15180] [evidence IEA]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence ISS]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence IEA]; Catalysis of the transfer of L-proline from one side of a membrane to the other. L-proline is pyrrolidine-2-carboxylic acid [goid 15193] [evidence ISS]; Catalysis of the transfer of L-proline from one side of a membrane to the other. L-proline is pyrrolidine-2-carboxylic acid [goid 15193] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Lyaat1	Lyaat1
Rattus norvegicus	RefSeq	GI_62661332-S	ILMN_52906	SLC39A2_PREDICTED	XM_223975.4	XM_223975.4		305846	109501554	XM_223975.4	Slc39a2_predicted	XP_223975.4	ILMN_1348977	0006400647	S	868	GCCAAGTATGGCTGTGTGGCTGCCGGGTTTGCCTTCATGGCCCTTATTGC	15	+	27330083-27330132	15p14	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 2 (predicted) (Slc39a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658487-S	ILMN_266031	RGD1559564_PREDICTED	XR_008711.1	XR_008711.1		363871	109496570	XR_008711.1	RGD1559564_predicted		ILMN_1358827	0001410168	S	946	ACAACTCCAGAACCCCCAGTGCAGGATGCCTCAGGGATGCAAGAGACTCT				12p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930449I24 (predicted) (RGD1559564_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34876786-S	ILMN_270041	RGD1561181_PREDICTED	XM_001058739.1	XM_001058739.1		500547	109477259	XM_001058739.1	RGD1561181_predicted	XP_001058739.1	ILMN_1351773	0002360646	S	183	GAGACGAGCCGTTGGCATCTGGCATTGTGGTTCCTGCATGAAAACAGTGG				5q36	PREDICTED: Rattus norvegicus RGD1561181 (predicted) (RGD1561181_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649656-S	ILMN_270041	RGD1561181_PREDICTED	XM_001058739.1	XM_001058739.1		500547	109477259	XM_001058739.1	RGD1561181_predicted	XP_001058739.1	ILMN_1358095	0004540047	S	309	GGACCAGTAGAAGCACCTCCTGAGACTTGCCTGGTCTGCAATAAATGGGC				5q36	PREDICTED: Rattus norvegicus RGD1561181 (predicted) (RGD1561181_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656865-S	ILMN_51004	DLX3_PREDICTED	XM_220869.2	XM_220869.2		287638	62656865	XM_220869.2	Dlx3_predicted	XP_220869.1	ILMN_1349978	0003450332	S	2412	GGGTTTCGTGGGATGTTCAGGAGCAAGGAGAGATGTGGTGGGTCTCCGAG				10q31	PREDICTED: Rattus norvegicus distal-less homeobox 3 (predicted) (Dlx3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665496-S	ILMN_51673	LOC502209	XM_577670.1	XM_577670.1		502209	62665496	XM_577670.1	LOC502209	XP_577670.1	ILMN_1356494	0004760270	S	827	TCGTCTTTCTGCACAGTGTACTGGTTCCTATGACGACAGCAACGCGGTCC					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG19037 (LOC502209), mRNA.					
Rattus norvegicus	RefSeq	GI_47576664-S	ILMN_271256	OLR1694	NM_001001110.1	NM_001001110.1		406008	47576664	NM_001001110.1	Olr1694	NP_001001110.1	ILMN_1365155	0003360148	S	460	GCAAACTCTCTTGTGCAGTCCACTCTCACTGTTGTAGCCCCAAGGTGTGG	20	-	664849-664898	20p12	Rattus norvegicus olfactory receptor 1694 (Olr1694), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	MOR256-3; Olr1694	MOR256-3; Olr1694
Rattus norvegicus	RefSeq	GI_8393640-S	ILMN_301285	AADAT	NM_017193.1	NM_017193.1		29416	8393640	NM_017193.1	Aadat	NP_058889.1	ILMN_1369433	0006400487	S	1296	CCTCCTTCTTCAGAGCATCCTTCTCTCAGGTTACTCCAGCGCAGATGGAC	16	-	32846465-32846514	16p12	Rattus norvegicus aminoadipate aminotransferase (Aadat), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IDA]	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid [goid 8483] [evidence TAS]; Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-glutamate [goid 16212] [evidence IEA]; Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-glutamate [goid 16212] [evidence IDA]; Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-glutamate [goid 16212] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IMP]; Catalysis of the reaction: L-2-aminoadipate + 2-oxoglutarate = 2-oxoadipate + L-glutamate [goid 47536] [evidence IEA]	Kat2	Kat2
Rattus norvegicus	RefSeq	GI_62650661-S	ILMN_48109	LOC299002	XM_234110.3	XM_234110.3		299002	62650661	XM_234110.3	LOC299002	XP_234110.3	ILMN_1362592	0002810538	S	2734	CCTGGTAGTCCTGGTAGTCCTGGTTGTCCTGGAACCTGGCTATGTAGAAC				6q22	PREDICTED: Rattus norvegicus similar to KIAA1333 protein (predicted) (LOC299002), mRNA.					
Rattus norvegicus	RefSeq	GI_62656352-S	ILMN_269291	ALOX12E_PREDICTED	XM_001079635.1	XM_001079635.1		303252	109491147	XM_001079635.1	Alox12e_predicted	XP_001079635.1	ILMN_1370164	0006520044	S	2121	GCCACACCCTCTTGTGAATAGGTAGCTTCGCACCACACAGCCCTGGGGAA				10q24	PREDICTED: Rattus norvegicus arachidonate lipoxygenase, epidermal (predicted) (Alox12e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012359-S	ILMN_262915	KRT4	NM_001008806.1	NM_001008806.1		315323	57012359	NM_001008806.1	Krt4	NP_001008806.1	ILMN_1353651	0005670148	S	1539	GATCACCTCTTCCGCCACCATCACCAAGAGATCCCCACGAACAAGACAGG	7	-	140622657-140622706	7q36	Rattus norvegicus keratin 4 (Krt4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643551	ILMN_52954	RGD1312006_PREDICTED	XM_215577.3	XM_215577.3		295106	62643551	XM_215577.3	RGD1312006_predicted	XP_215577.3	ILMN_1651052	0004730324	S	3669	CTGGCCTCCACGGTAACTGCTGATGCAGGTTTTGTTCATCGAAATGCCCG				2q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921524P20 (predicted) (RGD1312006_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644591-S	ILMN_287425	DEPDC1A_PREDICTED	XM_001080406.1	XM_001080406.1		295538	109467801	XM_001080406.1	Depdc1a_predicted	XP_001080406.1	ILMN_1351862	0001570091	S	2574	CCCCTTGATATATCAGAAAAGGTTCCCAACCACTGAGAGTGAAGCAGCAC				2q45	PREDICTED: Rattus norvegicus DEP domain containing 1a (predicted) (Depdc1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865809-A	ILMN_267816	NAGA	NM_001012120.1	NM_001012120.1		315165	58865809	NM_001012120.1	Naga	NP_001012120.1	ILMN_1376465	0006290279	S	1485	AACTTGGAACTCTTGGGGCAGTTTCCTGTGGCCTTTGGGCCTCTGTCCCC	7	-	120706375-120706424	7q34	Rattus norvegicus N-acetyl galactosaminidase, alpha (Naga), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D-galactosaminides [goid 8456] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638987-S	ILMN_282593	PIRA2_PREDICTED	XM_001065765.1	XM_001065765.1		361492	109461034	XM_001065765.1	Pira2_predicted	XP_001065765.1	ILMN_1367498	0003390452	S	1848	TGCTATGACCTCCACCCTCTCGGGCTCCTACAGGTGGTATGGTTCTCGAA				1q12	PREDICTED: Rattus norvegicus paired-Ig-like receptor A2 (predicted) (Pira2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653193-S	ILMN_63303	RGD1559430_PREDICTED	XM_345895.3	XM_345895.3		367012	109483040	XM_345895.3	RGD1559430_predicted	XP_345896.2	ILMN_1362573	0004570039	S	1315	CTTCCCGAAGGAGAGTTGCCCTTGTGTGCTAAGCTGCTGAGTGGAGCAGT	8	-	3238467-3238516	8q11	PREDICTED: Rattus norvegicus similar to DNA-damage inducible protein 1 (predicted) (RGD1559430_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651136-S	ILMN_296346	TDP1	NM_001031657.1	NM_001031657.1		314380	72255546	NM_001031657.1	Tdp1	NP_001026827.1	ILMN_1350291	0002120286	S	1436	CTGCACCCCTACTTCCACAAGTGGTCAGCAGAGACATCCGGCCGAAGCAA	6	+	124125904-124125920:124127204-124127236	6q32	Rattus norvegicus tyrosyl-DNA phosphodiesterase 1 (Tdp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group [goid 8081] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC112732	MGC112732
Rattus norvegicus	RefSeq	GI_47606368-S	ILMN_271122	OLR382	NM_001001278.1	NM_001001278.1		293815	47606368	NM_001001278.1	Olr382	NP_001001278.1	ILMN_1366559	0006180288	S	539	ACCTTCCACCCTTGCTGAAACTGGCCTGCAGTGACACAACAAATGCTGAG	1	-	216978070-216978119	1q43	Rattus norvegicus olfactory receptor 382 (Olr382), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr382	Olr382
Rattus norvegicus	RefSeq	GI_62652809-S	ILMN_64977	MEI1_PREDICTED	XM_235509.3	XM_235509.3		315162	62652809	XM_235509.3	Mei1_predicted	XP_235509.3	ILMN_1374929	0002970168	S	3575	CTGAGACTTATGACCTTGTTCGTGCAGTACCGGAGCAGTGGCATCCTCTC				7q34	PREDICTED: Rattus norvegicus meiosis defective 1 (predicted) (Mei1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655591-S	ILMN_60719	LOC304721	XM_222536.3	XM_222536.3		304721	62655591	XM_222536.3	LOC304721	XP_222536.3	ILMN_1371737	0000580044	S	3326	ACAGACAGTTCACACCTGCCAACCAACACTCAGGAGGCTGAGGCTGAGGC				10q11	PREDICTED: Rattus norvegicus similar to expressed sequence AA415817 (LOC304721), mRNA.					
Rattus norvegicus	RefSeq	GI_62643638-S	ILMN_57469	LOC310436	XM_227169.3	XM_227169.3		310436	62643638	XM_227169.3	LOC310436	XP_227169.3	ILMN_1367075	0000430672	S	374	CACAGCTCTGAGGTTTGAGCTGCTGGGAACACTGGAGCTGCAGAAGATCC					PREDICTED: Rattus norvegicus similar to SET domain-containing protein (LOC310436), mRNA.					
Rattus norvegicus	RefSeq	GI_62658582	ILMN_284957	LOC680711	XM_001056892.1	XM_001056892.1		680711	109495358	XM_001056892.1	LOC680711	XP_001056892.1	ILMN_1651161	0000520164	S	1643	CCACTATGACACTGTGGGTCCGTATTTCATACTTCGCTCTGTGCGCCACG	12	-	17662607-17662656	12q11	PREDICTED: Rattus norvegicus hypothetical protein LOC680711 (LOC680711), mRNA.					
Rattus norvegicus	RefSeq	GI_62645229-S	ILMN_288730	DLX2	XM_001060785.1	XM_001060785.1		296499	109470078	XM_001060785.1	Dlx2	XP_001060785.1	ILMN_1350597	0006770121	S	2210	TGTAAACCGCCCCCCAGTTGTGAAAGCTGCGACGTAGCAATGACCTCAGC				3q21	PREDICTED: Rattus norvegicus distal-less homeobox 2 (Dlx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex [goid 21772] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain [goid 21882] [evidence ISS]; The process whereby the developmental fate of a neuroblast becomes restricted such that it will develop into a GABAergic interneuron residing in the cerebral cortex [goid 21893] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process by which the anatomical structures of cranial skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48701] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence ISS]; The process by which the anatomical structures of branches in a nerve are generated and organized. Morphogenesis pertains to the creation of form. This term refers to an anatomical structure (nerve) not a cell (neuron) [goid 48755] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with single-stranded RNA [goid 3727] [evidence ISS]; Interacting selectively with single-stranded RNA [goid 3727] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_52138587-S	ILMN_280157	CD24	NM_012752.2	NM_012752.2		25145	52138587	NM_012752.2	Cd24	NP_036884.1	ILMN_1364569	0002810451	S	1620	CCGTCTTTAGAAACCTACCCGGGAACAAGGAGACCTCACAGACCCGAAGC	20	+	47507439-47507488	20q13	Rattus norvegicus CD24 antigen (Cd24), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane, with the bulk of the gene product located on the side opposite to the side that faces the cytoplasm. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 31362] [evidence ISS]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane, with the bulk of the gene product located on the side opposite to the side that faces the cytoplasm. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 31362] [evidence IDA]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence ISS]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence TAS]; The portion of the plasma membrane surrounding a cilium [goid 60170] [evidence ISS]; The portion of the plasma membrane surrounding a cilium [goid 60170] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand [goid 1775] [evidence ISS]; Any process that modulates the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1959] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a pre-B cell. Pre-B cells follow the pro-B cell stage of immature B cell differentiation and undergo rearrangement of heavy chain V, D, and J gene segments [goid 2329] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a pre-B cell. Pre-B cells follow the pro-B cell stage of immature B cell differentiation and undergo rearrangement of heavy chain V, D, and J gene segments [goid 2329] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body during an inflammatory response [goid 2523] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body during an inflammatory response [goid 2523] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of a T cell mediated immune response to tumor cell [goid 2842] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of a T cell mediated immune response to tumor cell [goid 2842] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2863] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2863] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of B cell apoptosis [goid 2904] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of B cell apoptosis [goid 2904] [evidence IEA]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence NAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence TAS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence IEA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IEA]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence ISS]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence NAS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell [goid 22407] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The morphological and physiological alterations undergone by the nucleus during apoptosis [goid 30262] [evidence ISS]; The morphological and physiological alterations undergone by the nucleus during apoptosis [goid 30262] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence IEA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IEA]; The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation [goid 31295] [evidence ISS]; The directed movement of a chemokine receptor out of a membrane raft [goid 32600] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta3 [goid 32913] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of integrin activation [goid 33625] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of integrin activation [goid 33625] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of cell adhesion mediated by integrin [goid 33630] [evidence ISS]; Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin [goid 33632] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of cell-cell adhesion mediated by integrin [goid 33634] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of cell-cell adhesion mediated by integrin [goid 33634] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate, or extent of erythrocyte clearance [goid 34107] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate, or extent of erythrocyte clearance [goid 34107] [evidence IEA]; The attachment of a cell to a second cell of the identical type via adhesion molecules [goid 34109] [evidence ISS]; The attachment of a cell to a second cell of the identical type via adhesion molecules [goid 34109] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate, or extent of erythrocyte aggregation [goid 34119] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate, or extent of erythrocyte aggregation [goid 34119] [evidence IEA]; Any process that activates or increases the rate or extent of resting T cell proliferation [goid 42103] [evidence ISS]; Any process that activates or increases the rate or extent of resting T cell proliferation [goid 42103] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; Any process that modulates the frequency, rate or extent of B cell differentiation [goid 45577] [evidence ISS]; Any process that modulates the frequency, rate or extent of B cell differentiation [goid 45577] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IEA]; A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 45730] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of resting T cell proliferation [goid 46014] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of resting T cell proliferation [goid 46014] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence IEA]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence ISS]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50768] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [pmid 2153173] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with any carbohydrate [goid 30246] [evidence ISS]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]; Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein [goid 30296] [evidence ISS]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]	MGC93641; Cd24a	MGC93641; Cd24a
Rattus norvegicus	RefSeq	GI_62645795-S	ILMN_266433	CEP152_PREDICTED	XR_009444.1	XR_009444.1		311391	109470766	XR_009444.1	Cep152_predicted		ILMN_1361315	0006900025	S	5468	TCAGGAAACCCAGCGGCACAGGACCAGCTTCACTGTGTCAGAAGCCTTTG				3q36	PREDICTED: Rattus norvegicus centrosomal protein 152 (predicted) (Cep152_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660129-S	ILMN_48975	LOC364102	XM_344211.2	XM_344211.2		364102	62660129	XM_344211.2	LOC364102	XP_344212.2	ILMN_1369366	0002570039	S	1535	TGAAGGGGAGGCTGTAGCCAGAGGGGTGAACAAGACAGTTCTGCTAGCCT				14p22	PREDICTED: Rattus norvegicus similar to proliferating cell nuclear antigen (LOC364102), mRNA.					
Rattus norvegicus	RefSeq	GI_40786480-S	ILMN_275986	RGD735112	NM_199391.1	NM_199391.1		304055	40786480	NM_199391.1	RGD735112	NP_955423.1	ILMN_1367699	0005420348	S	3418	CCGGGTGTCACAACCCTCCAGGGCCATTGTCTTTGGGTTAGGGTGTCAAT	11	-	37873656-37873705	11q12	Rattus norvegicus similar to RIKEN cDNA 5830404H04 (RGD735112), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			MGC72630	MGC72630
Rattus norvegicus	RefSeq	GI_20127389-S	ILMN_292844	ZFP179	NM_138613.1	NM_138613.1		24916	20127389	NM_138613.1	Zfp179	NP_619516.1	ILMN_1353656	0000050176	S	2757	CTGTAAGACCCCTTGGATGCAGCCCTCTGAACGACAAACCCCCAGAGAGC	10	-	47600082-47600131	10q23	Rattus norvegicus zinc finger protein 179 (Zfp179), mRNA.			Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence NAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Znf179; BFP; Bfb	Znf179; BFP; Bfb
Rattus norvegicus	RefSeq	GI_56090298-S	ILMN_290915	ODF4	NM_001007670.1	NM_001007670.1		303236	56090298	NM_001007670.1	Odf4	NP_001007671.1	ILMN_1364037	0001400278	S	1169	CTTTTTGGATCCGGTTTGTCCCAGCATCCTCTGCTGTAGCGCGCCTGTGC	10	-	55681138-55681187	10q24	Rattus norvegicus outer dense fiber of sperm tails 4 (Odf4), mRNA.	Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence ISS]; Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		MGC94483	MGC94483
Rattus norvegicus	RefSeq	GI_47577442-S	ILMN_272815	OLR691	NM_001000630.1	NM_001000630.1		404822	47577442	NM_001000630.1	Olr691	NP_001000630.1	ILMN_1371626	0003170152	S	670	AGGGCGTACCCTGCAGAGAGCCGCAGAAAAGCTCTTTCCACATGCAGTTC	3	+	73612361-73612410	3q24	Rattus norvegicus olfactory receptor 691 (Olr691), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr691	Olr691
Rattus norvegicus	RefSeq	GI_62640943-S	ILMN_280843	RGD1310712_PREDICTED	XM_001064849.1	XM_001064849.1		361607	109462442	XM_001064849.1	RGD1310712_predicted	XP_001064849.1	ILMN_1365880	0000670707	S	3974	TGCTGTTGGCCCTCCCCTAACGACCAGAAAAGTGGAAGCAGCAGGAGTGC				1q32	PREDICTED: Rattus norvegicus similar to EMSY protein (predicted) (RGD1310712_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653999-S	ILMN_58042	LOC503215	XM_578739.1	XM_578739.1		503215	62653999	XM_578739.1	LOC503215	XP_578739.1	ILMN_1356062	0000580128	S	2731	CAGCCTCATGCACTGTGAAGGGAACTGACTTGGCTGGCTCTGAGAATCCC					PREDICTED: Rattus norvegicus similar to Death-associated protein kinase 3 (DAP kinase 3) (DAP-like kinase) (Dlk) (ZIP-kinase) (LOC503215), mRNA.					
Rattus norvegicus	RefSeq	GI_20302132-S	ILMN_275853	NOS1AP	NM_138922.1	NM_138922.1		192363	20302132	NM_138922.1	Nos1ap	NP_620277.1	ILMN_1372665	0001770408	S	2593	AGAGCCTGGGGAGGGTTAGCCTAGGGGAGGGTTAGCCTAGAGAAGGGTTA	13	-	86159556-86159605	13q24	Rattus norvegicus nitric oxide synthase 1 (neuronal) adaptor protein (Nos1ap), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence NAS]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence NAS]; Any process that modulates the activity of the enzyme nitric-oxide synthase [goid 50999] [evidence IC ]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IDA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_56790290-S	ILMN_298749	IRF8	NM_001008722.1	NM_001008722.1		292060	56790290	NM_001008722.1	Irf8	NP_001008722.1	ILMN_1364238	0002340072	S	923	CCAACAAGCTGGAGCGGGATGAGGTGGTGCAGGTCTTTGACACCAACATG	19	+	51114024-51114073	19q12	Rattus norvegicus interferon regulatory factor 8 (Irf8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]	ICSBP; Icsbp1	ICSBP; Icsbp1
Rattus norvegicus	RefSeq	GI_62339329-S	ILMN_274968	PCDHB4_PREDICTED	XM_001055111.1	XM_001055111.1		291655	109506465	XM_001055111.1	Pcdhb4_predicted	XP_001055111.1	ILMN_1354848	0001450022	S	2197	GCCAGAGGTGGCGCTGGACCCTACATACGATGAAGATAATCTCACGCTGT	18	+	30119212-30119261	18p11	PREDICTED: Rattus norvegicus protocadherin beta 4 (predicted) (Pcdhb4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666011-S	ILMN_276103	ASF1A_PREDICTED	XM_001059946.1	XM_001059946.1		294408	109510161	XM_001059946.1	Asf1a_predicted	XP_001059946.1	ILMN_1351513	0001340333	S	770	GCACTGCCTTCAGCATCAAAGGGATGGGCGACGTCAGAAAACTCACTCAG				20q11	PREDICTED: Rattus norvegicus ASF1 anti-silencing function 1 homolog A (S. cerevisiae) (predicted) (Asf1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50878266-S	ILMN_271117	HCN2	XM_001077248.1	XM_001077248.1		114244	109481623	XM_001077248.1	Hcn2	XP_001077248.1	ILMN_1350868	0007000390	S	2209	GACCCACTGGACTCTGCGCGCTCGCGCCTCTCTTCCAACTTGTGACCCTT				7q11	PREDICTED: Rattus norvegicus hyperpolarization activated cyclic nucleotide-gated potassium channel 2 (Hcn2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078560-S	ILMN_273116	TAS2R134	XM_001065091.1	XM_001065091.1		295589	109469906	XM_001065091.1	Tas2r134	XP_001065091.1	ILMN_1368614	0006860152	S	826	GGCACTGGGCCTGGGAAGTGATAACCTACATGGGCATCCTACTGCATTCC				3q12	PREDICTED: Rattus norvegicus taste receptor, type 2, member 134 (Tas2r134), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56799435-S	ILMN_274984	CBX3	NM_001008313.2	NM_001008313.2		297093	56799435	NM_001008313.2	Cbx3	NP_001008314.2	ILMN_1366787	0003710537	S	1324	CTGGTCTACAGAGGCAGGTCTAGGTCAGTGGGTCTGTGTAAAGGTTCCTC	4	+	79721187-79721236	4q24	Rattus norvegicus chromobox homolog 3 (HP1 gamma homolog, Drosophila) (Cbx3), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A region at which the centric regions of polytene chromosomes are joined together [goid 5701] [evidence IEA]; The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin [goid 5719] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]	The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The formation or destruction of chromatin structures [goid 6333] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]	MGC94711; MGC105793; MGC156678; Hp1-gamma; MGC105792	MGC94711; MGC105793; MGC156678; Hp1-gamma; MGC105792
Rattus norvegicus	RefSeq	GI_62666870-S	ILMN_286274	RGD1560334_PREDICTED	XM_001057245.1	XM_001057245.1		317454	109511810	XM_001057245.1	RGD1560334_predicted	XP_001057245.1	ILMN_1362208	0003870133	S	376	TGTTGGGGGGACCTGATACGGACCCTGGGCCAGAACCCTACCAATGCTGA				Xq22	PREDICTED: Rattus norvegicus similar to Myosin light chain 1 slow a (predicted) (RGD1560334_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758259-S	ILMN_268335	SLC25A27	NM_053500.1	NM_053500.1		85262	16758259	NM_053500.1	Slc25a27	NP_445952.1	ILMN_2040789	0005130608	S	2457	CCCTGCACCTCTTCGGGTTTCCCACCTGTCTGTTGCATTCATTGACCCGC	9	+	13028314-13028363	9q12	Rattus norvegicus solute carrier family 25, member 27 (Slc25a27), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence NAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Ucp4	Ucp4
Rattus norvegicus	RefSeq	GI_62648946-S	ILMN_49270	LOC502947	XM_578451.1	XM_578451.1		502947	62648946	XM_578451.1	LOC502947	XP_578451.1	ILMN_1372736	0001990215	S	942	GTGGTTCAGTGGCAGGATGTAGGCTACCTTATCTGGGGACCCTTGACCCC					PREDICTED: Rattus norvegicus similar to GLI pathogenesis-related 2 (LOC502947), mRNA.					
Rattus norvegicus	RefSeq	GI_62663259-S	ILMN_277396	GPRIN1_PREDICTED	XM_001070221.1	XM_001070221.1		364676	109505476	XM_001070221.1	Gprin1_predicted	XP_001070221.1	ILMN_1367400	0005550176	S	2519	GTGAGCTGGGACGAGAAGGGCATGACGTGGGAAGTGTACGGTGCCTCCAT				17p14	PREDICTED: Rattus norvegicus G protein-regulated inducer of neurite outgrowth 1 (predicted) (Gprin1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660216-I	ILMN_54745	CDKL2_PREDICTED	XM_573566.1	XM_573566.1		305242	62660216	XM_573566.1	Cdkl2_predicted	XP_573566.1	ILMN_1376064	0000670605	S	2396	GATCACCTGTGTCAGATGAGTCCGAGGCTGACTTGCCTCGAATGGAGCAC				14p22	PREDICTED: Rattus norvegicus cyclin-dependent kinase-like 2 (CDC2-related kinase) (predicted) (Cdkl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865419-A	ILMN_263124	NUP93	NM_001011925.1	NM_001011925.1		291874	58865419	NM_001011925.1	Nup93	NP_001011925.1	ILMN_1376338	0004120014	S	2364	CTCAAGGGAACAAGCCCATCTTCAGCAACCAGGCCCCAGCGAGTCATCGA	19	-	11124794-11124838:11124839-11124843	19p12	Rattus norvegicus nucleoporin 93kDa (Nup93), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665036-S	ILMN_291444	RGD1310262_PREDICTED	XM_001072269.1	XM_001072269.1		304650	109508649	XM_001072269.1	RGD1310262_predicted	XP_001072269.1	ILMN_1363972	0000520092	S	629	CCTGAGGTCTGTGAAGGTTGGGGCCTGCGGCCAGAAGTAACATGCCCTTT				19q11	PREDICTED: Rattus norvegicus hypothetical LOC304650 (predicted) (RGD1310262_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850587-S	ILMN_264479	TTC1	NM_001005529.1	NM_001005529.1		287208	53850587	NM_001005529.1	Ttc1	NP_001005529.1	ILMN_1371338	0001570082	S	981	GTAGTCCTAAAGGCTGACTGGGAGGCCATGAGCGGTTCACAGCGAGCATG	10	-	28836408-28836457	10q21	Rattus norvegicus tetratricopeptide repeat domain 1 (Ttc1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	MGC95276	MGC95276
Rattus norvegicus	RefSeq	GI_42476170-S	ILMN_283758	NPM1	NM_012992.2	NM_012992.2		25498	42476170	NM_012992.2	Npm1	NP_037124.1	ILMN_1363490	0006770300	S	32	CTGCGGAACAGTAGGCAGTTGTTTTCCGTCCGGCTTCTCTCACACTCAAG	10	-	18062633-18062682	10q12	Rattus norvegicus nucleophosmin 1 (Npm1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; The cell cycle process whereby centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle [goid 7098] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IDA]; Any process that modulates the frequency, rate or extent of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage [goid 43516] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IDA]; Any process that modulates the frequency, rate or extent of anti-apoptosis [goid 45767] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA [goid 51054] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The cell cycle process whereby centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle [goid 7098] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phosphatidylinositol-3,4,5-triphosphate, the triphosphorylated derivative of phosphatidylinositol [goid 5547] [evidence IPI]; Interacting selectively with ribosomal RNA [goid 19843] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with Tat, a viral transactivating regulatory protein from the human immunodeficiency virus, or the equivalent protein from another virus [goid 30957] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]	MGC108517; B23NP	MGC108517; B23NP
Rattus norvegicus	RefSeq	GI_54234045-S	ILMN_286881	CST3	NM_012837.1	NM_012837.1		25307	54234045	NM_012837.1	Cst3	NP_036969.1	ILMN_1355561	0000940100	S	431	TCTACAGCGTGCCCTGGAAAGGCACACACACCCTGACAAAATCCAGCTGC	3	-	137651151-137651200	3q41	Rattus norvegicus cystatin C (Cst3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins [goid 10466] [evidence ISS]; A process that results in the breakdown of the extracellular matrix [goid 22617] [evidence ISS]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence ISS]; Any process that modulates the frequency, rate, or extent of tissue remodeling [goid 34103] [evidence ISS]; Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43067] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of fibrils, extracellular matrix material consisting of polysaccharides and protein [goid 43206] [evidence ISS]; The chemical reactions and pathways involving elastin, a glycoprotein which is randomly coiled and cross linked to form elastic fibres that are found in connective tissue [goid 51541] [evidence ISS]	Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS];  [goid 4869] [evidence TAS];  [goid 4869] [evidence TAS];  [goid 4869] [evidence IEA]	MGC105556; CYSC	MGC105556; CYSC
Rattus norvegicus	RefSeq	GI_62645148-S	ILMN_280382	LOC679107	XM_001055210.1	XM_001055210.1		679107	109469982	XM_001055210.1	LOC679107	XP_001055210.1	ILMN_1354147	0001340528	S	2664	ACTCGAGCGACTCGGGGATTTACGAGCAGGCCAAGCGGAGGCGGATCTCT					PREDICTED: Rattus norvegicus similar to T-box brain gene 1, transcript variant 2 (LOC679107), mRNA.					
Rattus norvegicus	RefSeq	GI_62642968-S	ILMN_70272	RGD1308448_PREDICTED	XM_227078.4	XM_227078.4		310358	109464445	XM_227078.4	RGD1308448_predicted	XP_227078.3	ILMN_1370754	0006860114	S	1799	CAGCAGCTCTGTGCGAAGCAGCTAGGACTACCATGCAAACAGACTTTTGG	2	+	53584627-53584676	2q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B130016O10 gene (predicted) (RGD1308448_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642857-S	ILMN_64517	LOC365651	XM_345142.2	XM_345142.2		365651	62642857	XM_345142.2	LOC365651	XP_345143.2	ILMN_1360813	0003060278	S	1297	AGCCCAAGCCCAAGGTTTCTGTAGAACACAGGCAGGACGCCAAGGAGGAG					PREDICTED: Rattus norvegicus similar to CG7462-PC (predicted) (LOC365651), mRNA.					
Rattus norvegicus	RefSeq	GI_62666082-S	ILMN_57427	LOC502425	XM_577907.1	XM_577907.1		502425	62666082	XM_577907.1	LOC502425	XP_577907.1	ILMN_1356748	0006100538	S	1814	GACTGTGTTTCCAAGGAATCCTCGAGAGCATGGAAGCTGGAAGCAATGTG					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502425), mRNA.					
Rattus norvegicus	RefSeq	GI_62650671-S	ILMN_48549	RGD1561116_PREDICTED	XM_343061.3	XM_343061.3		362737	109478163	XM_343061.3	RGD1561116_predicted	XP_343062.3	ILMN_1371792	0003060102	S	6216	GCCCGGCTGGAGGCTGCTGTAAAGGGCAATCAGGAAAGTGTCAGAGTGGA	6	-	72025596-72025645	6q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D930036F22 gene (predicted) (RGD1561116_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663380-S	ILMN_51286	LOC498722	XM_579865.1	XM_579865.1		498722	62663380	XM_579865.1	LOC498722	XP_579865.1	ILMN_1350535	0001500575	S	480	GATGGAGGATTCGGTTGGTATGGATCAGACAGAGAGAGGACTCATCCTGC					PREDICTED: Rattus norvegicus LOC498722 (LOC498722), mRNA.					
Rattus norvegicus	RefSeq	GI_6981267-S	ILMN_288481	NFYA	NM_012865.1	NM_012865.1		29508	6981267	NM_012865.1	Nfya	NP_036997.1	ILMN_1374176	0005390176	S	1183	TCCGAGTTTCCTAACCACAGGAGGGTGGCAGAGCGGATGAGTCACAGTCC	9	+	7994142-7994156:7994157-7994191	9q12	Rattus norvegicus nuclear transcription factor-Y alpha (Nfya), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; in Saccharomyces it activates the transcription of genes in response to growth in a nonfermentable carbon source; consists of four known subunits: HAP2, HAP3, HAP4 and HAP5 [goid 16602] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62078454-S	ILMN_296191	PTRH2	NM_001013860.1	NM_001013860.1		287593	62078454	NM_001013860.1	Ptrh2	NP_001013882.1	ILMN_1366965	0006040372	S	2763	AAGTGATTAACCTGAGAGGGAGATGAGGGTTGGGGTGCTAGGGTCAGTAC	10	+	74974345-74974394	10q26	Rattus norvegicus peptidyl-tRNA hydrolase 2 (Ptrh2), nuclear gene encoding mitochondrial protein, mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661493-S	ILMN_266515	NFATC4	XM_001061815.1	XM_001061815.1		305897	109502450	XM_001061815.1	Nfatc4	XP_001061815.1	ILMN_1370683	0006650403	S	3214	GCTGGCAGGCTGGACAGGTTGATGGGTAATAAACTGCTTGCTGCCCGGTG				15p13	PREDICTED: Rattus norvegicus nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 (Nfatc4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IMP]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647438	ILMN_66865	LOC500188	XM_575540.1	XM_575540.1		500188	62647438	XM_575540.1	LOC500188	XP_575540.1	ILMN_1650971	0003170685	S	371	ACTGTGCCCCACATAGCCCTGGGCCTGCACTTTTCCTTCTTTTCCATTGG				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC500188), mRNA.					
Rattus norvegicus	RefSeq	GI_62646426-S	ILMN_61691	LOC366254	XM_578191.1	XM_578191.1		366254	62646426	XM_578191.1	LOC366254	XP_578191.1	ILMN_1363812	0001230273	S	154	AGGATGAGGTTTTAAAGAGCCTGCCGGAGCAGAAGGGGACTCGGGTTGGC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC366254), mRNA.					
Rattus norvegicus	RefSeq	GI_62661686-S	ILMN_55876	CHMP7_PREDICTED	XM_344430.3	XM_344430.3		364419	109501849	XM_344430.3	Chmp7_predicted	XP_344431.1	ILMN_1361740	0006200427	S	1586	GCCGCTCATACCAGGACAGATCCAACTTCTGGAAGCCATGCTATGGAGGC	15	-	50090175-50090224	15p11	PREDICTED: Rattus norvegicus CHMP family, member 7 (predicted) (Chmp7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981529-S	ILMN_302667	SGNE1	NM_013175.1	NM_013175.1		25719	6981529	NM_013175.1	Sgne1	NP_037307.1	ILMN_1374355	0000360519	S	531	CCTTTATGAGAAGATGAAGGGAGGACAGAGGCGGAAGCGGAGGAGTGTCA	3	-	99629718-99629725:99633489-99633530	3q34	Rattus norvegicus secretory granule neuroendocrine protein 1 (Sgne1), mRNA.				7B2	7B2
Rattus norvegicus	RefSeq	GI_62651923-S	ILMN_66419	LOC503118	XM_578638.1	XM_578638.1		503118	62651923	XM_578638.1	LOC503118	XP_578638.1	ILMN_1373868	0006290600	S	490	GGACAGCTGCCACTCATTATCTGGCTGATCATACCGGAGTGGTAAGAGAC					PREDICTED: Rattus norvegicus similar to hypothetical protein LOC269211 (LOC503118), mRNA.					
Rattus norvegicus	RefSeq	GI_27664677-S	ILMN_52803	LOC300201	XM_217032.1	XM_217032.1		300201	27664677	XM_217032.1	LOC300201	XP_217032.1	ILMN_2040599	0007320044	S	383	TAGTGATGCTCAAGGCCAGGGGGATGTGGATTGACACATCTAAGGTCCTG					PREDICTED: Rattus norvegicus similar to HSD-29 (LOC300201), mRNA.					
Rattus norvegicus	RefSeq	GI_13162362-S	ILMN_276953	FABP3	NM_024162.1	NM_024162.1		79131	13162362	NM_024162.1	Fabp3	NP_077076.1	ILMN_1355537	0000780170	S	316	CATGTGCAGAAGTGGGACGGGCAGGAGACTACGCTTACACGGGAACTAAG	5	+	149345785-149345834	5q36	Rattus norvegicus fatty acid binding protein 3, muscle and heart (Fabp3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The cytoplasm of a muscle fiber; includes the sarcoplasmic reticulum [goid 16528] [evidence IDA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IDA]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEP]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence NAS]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of long-chain fatty acids into, out of, within or between cells. Long-chain fatty acids have a chain length of greater than 12 carbons [goid 5324] [evidence IPI]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence TAS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IPI]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with icosatetraenoic acid, any straight-chain fatty acid with twenty carbon atoms and four double bonds per molecule [goid 50543] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_49225429-S	ILMN_273933	RBM10	NM_152861.3	NM_152861.3		64510	49225429	NM_152861.3	Rbm10	NP_690600.1	ILMN_1349535	0002320435	S	2965	GGTCTGAGGAAGGCTCTTCTATCTACCAGCCTGCTGCCCAACCAGAGAGG				Xq12	Rattus norvegicus RNA binding motif protein 10 (Rbm10), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19923679-S	ILMN_295710	PDE4B	NM_017031.2	NM_017031.2		24626	19923679	NM_017031.2	Pde4b	NP_058727.2	ILMN_1353078	0004780750	S	2800	GTTTGGAGCCAGAATGCAAGGCCGTGAAGCAAATAGCAGTTCCGTGCTGC	5	+	123533559-123533608	5q33-q34	Rattus norvegicus phosphodiesterase 4B, cAMP specific (Pde4b), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]		Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence IDA]	Pde4B2; PDE4/IVb; Pde4B1; Pde4B4; Pde4B3; MGC93193	Pde4B2; PDE4/IVb; Pde4B1; Pde4B4; Pde4B3; MGC93193
Rattus norvegicus	RefSeq	GI_62644464-S	ILMN_278125	RGD1309170_PREDICTED	XM_001078280.1	XM_001078280.1		362047	109467711	XM_001078280.1	RGD1309170_predicted	XP_001078280.1	ILMN_1361211	0005720156	S	1175	GACCAATGTCAGTAAGGAGTGTGCAAGGCTACAGCCCTCAGAGAGCACTC				2q44	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434G072 (predicted) (RGD1309170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653599-S	ILMN_61263	LOC300682	XM_236201.3	XM_236201.3		300682	62653599	XM_236201.3	LOC300682	XP_236201.3	ILMN_1352053	0006840601	S	1647	AAAAATCAAAAGCAACAGCTGCTGGCAAATCCGCTCGCGCTGGGCGCCTC				8q22	PREDICTED: Rattus norvegicus similar to mosaic serine protease (predicted) (LOC300682), mRNA.					
Rattus norvegicus	RefSeq	GI_6981495-S	ILMN_299181	RXRA	NM_012805.1	NM_012805.1		25271	6981495	NM_012805.1	Rxra	NP_036937.1	ILMN_1358732	0001940538	S	1867	TGGGAGAGGGGCTTGTTCTGGTTGCTGGTTGCTGTCGCTGGTTCTCGACA	3	+	6689660-6689709	3p12	Rattus norvegicus retinoid X receptor alpha (Rxra), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine [goid 7494] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion [goid 10269] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regrowth of axons following their loss or damage [goid 31103] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus [goid 33189] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence IEA]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence IEA]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS];  [goid 3706] [evidence IEA];  [goid 3706] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence TAS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114287-S	ILMN_277414	V1RC29	NM_001008972.1	NM_001008972.1		494314	57114287	NM_001008972.1	V1rc29	NP_001008972.1	ILMN_1370965	0004780279	S	609	TAGGCATCACAGGCAATGTAAGCATCTTCATAGCACCAGCCACTTGAGAG	4	+	86508327-86508376	4q24	Rattus norvegicus vomeronasal 1 receptor, C29 (V1rc29), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758141-S	ILMN_293961	CHST3	NM_053408.1	NM_053408.1		84468	16758141	NM_053408.1	Chst3	NP_445860.1	ILMN_1358740	0002760497	S	1337	TCGGCCACAAGTTGGCAAAGGATACCGCCTCACTCACCAACCGCTCCATC	20	-	27480486-27480535	20q11	Rattus norvegicus carbohydrate sulfotransferase 3 (Chst3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione [goid 6790] [evidence TAS]; The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione [goid 6790] [evidence ISS]; The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione [goid 6790] [evidence IEA]; The regrowth of axons outside the central nervous system (outside the brain and spinal cord) following an axonal injury [goid 14012] [evidence IEP]; The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate [goid 30206] [evidence ISS]; The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate [goid 30206] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence IDA]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate [goid 8459] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate [goid 8459] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 2'-O-sulfate. Results in sulfation of glucuronic acid and iduronic acid residues [goid 34482] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + proteoglycan = adenosine 3',5'-bisphosphate + proteoglycan sulfate. A proteoglycan is a glycoprotein whose carbohydrate units are glycosaminoglycans [goid 50698] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_13591941-S	ILMN_60885	GABBR1	NM_031028.2	NM_031028.2		81657	77404237	NM_031028.2	Gabbr1	NP_112290.2	ILMN_1354454	0002190050	S	2901	GCGTCTCTGAACTGCGCCATCAGCTCCAGTCTCGGCAGCAACTCCGCTCA	20	-	1554717-1554766	20p12	Rattus norvegicus gamma-aminobutyric acid (GABA) B receptor 1 (Gabbr1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [pmid 9069281] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IMP]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-B receptors are G-protein coupled receptors [goid 4965] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659544-S	ILMN_55870	CAP350	XM_341136.3	XM_341136.3		246304	109498046	XM_341136.3	Cap350	XP_341137.3	ILMN_1364561	0003870739	S	9386	GGTCCAGGAACTCCACGAAGAGGAGGCCCAGTGGGTTAACTATGATGAGG	13	-	70817673-70817722	13q21	PREDICTED: Rattus norvegicus centrosome-associated protein 350 (Cap350), mRNA.					
Rattus norvegicus	RefSeq	GI_12621135-S	ILMN_277481	BARHL2	NM_022956.1	NM_022956.1		65050	12621135	NM_022956.1	Barhl2	NP_075245.1	ILMN_1356488	0001990348	S	1412	GGCAGGGCCGCAAAGCTCCCCAACAGTGTGACTGGAGAAAATACTGACCC	14	+	3892888-3892937	14p22	Rattus norvegicus BarH-like homeobox 2 (Barhl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; Any process that modulates the rate, direction or extent of axon extension [goid 30516] [evidence ISS]; Any process that modulates the rate, direction or extent of axon extension [goid 30516] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MBH1; Barh	MBH1; Barh
Rattus norvegicus	RefSeq	GI_62663151-S	ILMN_65970	LOC498691	XM_573976.1	XM_573976.1		498691	62663151	XM_573976.1	LOC498691	XP_573976.1	ILMN_1362210	0002940750	S	1060	TGAGCTGCCCAACAACAAGGAGTGGACTGAGGAGGGCTTTCCACTTCCTG				17p14	PREDICTED: Rattus norvegicus similar to Cathepsin L-like (LOC498691), mRNA.					
Rattus norvegicus	RefSeq	GI_62660209	ILMN_293253	STBD1	NM_001013988.1	NM_001013988.1		305234	62078704	NM_001013988.1	Stbd1	NP_001014010.1	ILMN_1649808	0000460731	S	708	AACAGTCTTGTGGGAGGGGGCTGGGAGGTAGATGGGAAGGTGGTGTCTGT	14	-	17032928-17032977	14p22	Rattus norvegicus starch binding domain 1 (Stbd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]	MGC108973	MGC108973
Rattus norvegicus	RefSeq	GI_62649389	ILMN_278799	ECHDC2_PREDICTED	XM_001059951.1	XM_001059951.1		298381	109476876	XM_001059951.1	Echdc2_predicted	XP_001059951.1	ILMN_1649852	0005550193	S	1022	GCCACTTTCCATATTGCTCACCTTGGCTAGTCACTGGGATCCAGGGCTGC				5q35	PREDICTED: Rattus norvegicus enoyl Coenzyme A hydratase domain containing 2 (predicted) (Echdc2_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.8193	ILMN_161507	EVA_PREDICTED	Rn.8193		Rn.8193		62653595	XM_236197	Eva_predicted		ILMN_1530443	0000540129	S	1511	TTTTAAGTGTTCTAGATTTATCGTTTTGTCAATTACTCCAAGGTTTCTAG					PREDICTED: Rattus norvegicus epithelial V-like antigen (predicted) (Eva_predicted),					
Rattus norvegicus	RefSeq	GI_40254757-S	ILMN_53970	SUOX	NM_031127.3	NM_031127.3		81805	74024922	NM_031127.3	Suox	NP_112389.3	ILMN_1354502	0006400041	S	1615	GCTCAGCAATGCCTGGCACCGTGTCCACGTTCAGGTGGTTCCATGAAAGC	7	-	1973961-1973965:1973966-1974010	7q11	Rattus norvegicus sulfite oxidase (Suox), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IDA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: SO3(2-) (sulfite) + O2 + H2O = SO4(2-) (sulfate) + H2O2 [goid 8482] [evidence IDA]; Catalysis of the reaction: SO3(2-) (sulfite) + O2 + H2O = SO4(2-) (sulfate) + H2O2 [goid 8482] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with molybdenum (Mo) ions [goid 30151] [evidence IEA]; Interacting selectively with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands [goid 43546] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62078656-S	ILMN_296827	MGRN1	NM_001013964.1	NM_001013964.1		302938	62078656	NM_001013964.1	Mgrn1	NP_001013986.1	ILMN_1366160	0000840102	S	2088	ATGGGCCACGAGCCCTAGAGGGACTCTCCCCAACTGTCAAAGCTGATGCT	10	-	10756928-10756977	10q12	Rattus norvegicus mahogunin, ring finger 1 (Mgrn1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114245-S	ILMN_275469	V1RM5	NM_001008933.1	NM_001008933.1		494281	57114245	NM_001008933.1	V1rm5	NP_001008933.1	ILMN_1374755	0002510576	S	598	GCCTGGGCAAGTGGCTCCATGATCCTTGTCCTACACAAACACAAACAACG	1	+	72203542-72203591	1q21	Rattus norvegicus vomeronasal 1 receptor, M5 (V1rm5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651354-S	ILMN_59373	LOC366749	XM_576117.1	XM_576117.1		366749	62651354	XM_576117.1	LOC366749	XP_576117.1	ILMN_1358865	0007000541	S	412	CGACCAGCAGGGGGCGCTGAGGATCAACAAACTCTTTCCAGAATCACTTC				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC366749), mRNA.					
Rattus norvegicus	RefSeq	GI_62652212-S	ILMN_57851	LOC299827	XM_216902.4	XM_216902.4		299827	109480607	XM_216902.4	LOC299827	XP_216902.4	ILMN_1367327	0001240286	S	2206	CGGTATGAAGAAGCTGAAGGAGGAGATGGAGGGCGTGGTCAAGGAGCTGG	7	-	60866610-60866657:60866913-60866914	7q22	PREDICTED: Rattus norvegicus similar to TANK-binding kinase 1 (LOC299827), mRNA.					
Rattus norvegicus	RefSeq	GI_16758111-S	ILMN_282655	ATP1B4	NM_053381.1	NM_053381.1		84396	16758111	NM_053381.1	Atp1b4	NP_445833.1	ILMN_1364076	0002690609	S	3468	ACTCCAGGTCCAGTGCTCTCTCTACTCAGAGCTGCTGCTTACGGGGAAGC	X	-	7026188-7026237	Xq11	Rattus norvegicus ATPase, (Na+)/K+ transporting, beta 4 polypeptide (Atp1b4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]	Ac2-628	Ac2-628
Rattus norvegicus	RefSeq	GI_6981655-S	ILMN_60518	TIMP3	NM_012886.2	NM_012886.2		25358	67972653	NM_012886.2	Timp3	NP_037018.2	ILMN_1348821	0001090136	S	661	GACCACCTCACACTGTCCCAGCGCAAGGGCCTCAATTACCGCTACCACCT	7	-	19680767-19680816	7q13	Rattus norvegicus TIMP metallopeptidase inhibitor 3 (Timp3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus [goid 51593] [evidence IEP]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence TAS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638927-S	ILMN_276453	ZFP98_PREDICTED	XM_001062114.1	XM_001062114.1		361508	109460967	XM_001062114.1	Zfp98_predicted	XP_001062114.1	ILMN_1371128	0001850239	S	2369	CGCCGCTTTCACCAGAGCACCAAGCTCATCCAACATCAACGCATCCACAG				1q21	PREDICTED: Rattus norvegicus zinc finger protein 98 (predicted) (Zfp98_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638925-S	ILMN_276453	ZFP98_PREDICTED	XM_001062114.1	XM_001062114.1		361508	109460967	XM_001062114.1	Zfp98_predicted	XP_001062114.1	ILMN_1358872	0003780280	S	566	GCTGCTGCCTTGGTTGACAGACTTCGATGGGAGCTTGATGGACCTCGGAA				1q21	PREDICTED: Rattus norvegicus zinc finger protein 98 (predicted) (Zfp98_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605987-S	ILMN_262485	FANK1	NM_001008347.1	NM_001008347.1		309071	56605987	NM_001008347.1	Fank1	NP_001008348.1	ILMN_1351421	0005720301	S	1133	ACGGACCGACCTGAGCGAAGAGCAAACTGCGACCACCGGGCTGAACTCAT	1	+	193377420-193377469	1q41	Rattus norvegicus fibronectin type 3 and ankyrin repeat domains 1 (Fank1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			MGC95281	MGC95281
Rattus norvegicus	RefSeq	GI_62660712-S	ILMN_287683	RGD1565037_PREDICTED	XR_008359.1	XR_008359.1		498398	109500918	XR_008359.1	RGD1565037_predicted		ILMN_1370842	0004780687	S	257	GCCGAAATTACCAGGAACTAGAGCGAATCCCACTCAGCCAAATGACCCGG				14q21	PREDICTED: Rattus norvegicus similar to selenoprotein SelM (predicted) (RGD1565037_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644262-S	ILMN_67138	LOC499699	XM_575028.1	XM_575028.1		499699	62644262	XM_575028.1	LOC499699	XP_575028.1	ILMN_1361260	0004010300	S	3	CCAGCCCCGCCCGCAGAGAGGTGCTTTGCTCCACGATTGCTCTTTAGCGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5430428G01 (LOC499699), mRNA.					
Rattus norvegicus	RefSeq	GI_6978786-S	ILMN_263485	DYRK1A	NM_012791.1	NM_012791.1		25255	6978786	NM_012791.1	Dyrk1a	NP_036923.1	ILMN_1372137	0003870079	S	2346	GAGGCAAGGGGCTGATAGAGAAGAGTCTCCCATGACAGGAGTTTGTGTGC	11	+	34970508-34970557	11q11	Rattus norvegicus dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A (Dyrk1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 9748265] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [pmid 9748265] [evidence IDA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [pmid 9748265] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence TAS]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence TAS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [pmid 8631952] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [pmid 8631952] [evidence IDA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence ISS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [pmid 8631952] [evidence IDA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]	PSK47; Dyrk	PSK47; Dyrk
Rattus norvegicus	RefSeq	GI_47577428-S	ILMN_263315	OLR694	NM_001000357.1	NM_001000357.1		295896	47577428	NM_001000357.1	Olr694	NP_001000357.1	ILMN_1360104	0006040441	S	764	GCGTATTCACTTACATGCGTCCTGTGACCACCTACCCTGTGGACAAGCTG	3	-	73636044-73636093	3q24	Rattus norvegicus olfactory receptor 694 (Olr694), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	ratchr3-73533229-73532303_ORF; Olr694	ratchr3-73533229-73532303_ORF; Olr694
Rattus norvegicus	RefSeq	GI_62660822-S	ILMN_57152	LOC364200	XM_573666.1	XM_573666.1		364200	62660822	XM_573666.1	LOC364200	XP_573666.1	ILMN_1369800	0002640025	S	769	GACATCAAGAAGGTGGTGAAGCGGGGCTGGGGATTTAGCTCAGGCATCCT				14q21	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC364200), mRNA.					
Rattus norvegicus	RefSeq	GI_62718834-S	ILMN_65418	LOC363432	XM_343754.2	XM_343754.2		363432	62718834	XM_343754.2	LOC363432	XP_343755.2	ILMN_1349568	0005690332	S	35	CAAGTCCAACGTGCCAATGGTGGCCCCATTTTCAGGTGCTTTGGTAAAGC					PREDICTED: Rattus norvegicus similar to Afadin (AF-6 protein) (LOC363432), mRNA.					
Rattus norvegicus	RefSeq	GI_16258812-S	ILMN_292936	VHL	NM_052801.1	NM_052801.1		24874	16258812	NM_052801.1	Vhl	NP_434688.1	ILMN_1367225	0004060110	S	2547	CCAGTGTGGAGCCTGTGTGTGGGAAGTCAGCAGGTGCCGAGCTATTGCAA	4	+	149536029-149536078	4q42	Rattus norvegicus von Hippel-Lindau tumor suppressor (Vhl), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1 [goid 30891] [evidence IDA]; A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1 [goid 30891] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catecholamines [goid 42069] [evidence IMP]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence TAS]	Vhlh	Vhlh
Rattus norvegicus	RefSeq	GI_62645683-S	ILMN_48003	LOC311372	XM_242139.3	XM_242139.3		311372	62645683	XM_242139.3	LOC311372	XP_242139.3	ILMN_1371473	0001580537	S	6953	CCAGACTTTGCCTTCAGTCTTCCACAGCATGGGCTCTAATGGCACCTCTC				3q35	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21439 (LOC311372), mRNA.					
Rattus norvegicus	RefSeq	GI_31324551-S	ILMN_298598	NADSYN1	NM_181480.1	NM_181480.1		353255	31324551	NM_181480.1	Nadsyn1	NP_852145.1	ILMN_1350701	0002470017	S	2008	GACCTGAGACCCTTTCTGTACAACACGAGGTGGCCCTGGCAGTTCCTCTG	1	-	204189617-204189666	1q41	Rattus norvegicus NAD synthetase 1 (Nadsyn1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + deamido-NAD+ + L-glutamine + H2O = AMP + diphosphate + NAD+ + L-glutamate [goid 3952] [evidence ISS]; Catalysis of the reaction: ATP + deamido-NAD+ + L-glutamine + H2O = AMP + diphosphate + NAD+ + L-glutamate [goid 3952] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655141-S	ILMN_68306	EEF1B2_PREDICTED	XM_343580.3	XM_343580.3		363241	109486166	XM_343580.3	Eef1b2_predicted	XP_343581.1	ILMN_1350882	0007000286	S	357	CCTGGCGGACAAGAGCTACATTGAGGGGTACGTGCCATCACAAGCCGATG	9	+	61832578-61832604:61833054-61833076	9q31	PREDICTED: Rattus norvegicus eukaryotic translation elongation factor 1 beta 2 (predicted) (Eef1b2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667355-S	ILMN_273228	RGD1560293_PREDICTED	XM_001059303.1	XM_001059303.1		317578	109512557	XM_001059303.1	RGD1560293_predicted	XP_001059303.1	ILMN_1365050	0005340546	S	1213	GTGTCAGAACCCAAGGTGGACATCCCACGTGACTCTGGCTGCTTTGAGGG				Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200013B08 (predicted) (RGD1560293_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981545-S	ILMN_268271	SLC18A2	NM_013031.1	NM_013031.1		25549	6981545	NM_013031.1	Slc18a2	NP_037163.1	ILMN_1348934	0006180402	S	2721	GTGGTCGGGACACCTTCCCTTTCTGAAGCAGAGAAAACCATCTACAAGCG	1	+	265824360-265824409	1q55	Rattus norvegicus solute carrier family 18 (vesicular monoamine), member 2 (Slc18a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The directed movement of amines into, out of or within synaptic vesicles [goid 15842] [evidence TAS]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of amines, including polyamines, from one side of the membrane to the other. Amines are organic compounds that are weakly basic in character and contain an amino (-NH2) or substituted amino group [goid 5275] [evidence IDA]	MNAT; VMAT2	MNAT; VMAT2
Rattus norvegicus	RefSeq	GI_31342200-S	ILMN_299437	WNK4	NM_175579.2	NM_175579.2		287715	31342200	NM_175579.2	Wnk4	NP_783169.1	ILMN_1361733	0006840070	S	3781	CAGCACTGAGGGGGTAGAAGGCCAGTGGGCATGGAGAGTGCGTTGTGTTA	10	+	90305951-90306000	10q32.1	Rattus norvegicus WNK lysine deficient protein kinase 4 (Wnk4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 50794] [evidence ISS]; Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 50794] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Prkwnk4; Ac2-059	Prkwnk4; Ac2-059
Rattus norvegicus	RefSeq	GI_62642466-S	ILMN_288378	RGD1561154_PREDICTED	XR_007874.1	XR_007874.1		294046	109463991	XR_007874.1	RGD1561154_predicted		ILMN_1375078	0002970717	S	1822	TCTGCAGCCCTATCGTTACCAAGCTGCACCAGAGTGCTGGTGGCATGCGT				1q55	PREDICTED: Rattus norvegicus similar to heat shock protein 8 (predicted) (RGD1561154_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655006-S	ILMN_67861	LOC503256	XM_578790.1	XM_578790.1		503256	62655006	XM_578790.1	LOC503256	XP_578790.1	ILMN_1363782	0006350021	S	146	CTTGATCGTGGCATTTGGTGACACAGGACATGGACACGGGACTTCATGGC					PREDICTED: Rattus norvegicus similar to UDP-glucuronate decarboxylase 1 (LOC503256), mRNA.					
Rattus norvegicus	RefSeq	GI_62657804-S	ILMN_49131	RIPK4_PREDICTED	XM_221619.4	XM_221619.4		304053	109493005	XM_221619.4	Ripk4_predicted	XP_221619.4	ILMN_1360821	0006550731	S	2187	CTGAATCAAACAGCACTGCACCTGGCTGCTGCCCGTGGACACTCAGAGGT	11	-	37769176-37769225	11q12	PREDICTED: Rattus norvegicus receptor-interacting serine-threonine kinase 4 (predicted) (Ripk4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650443-S	ILMN_59991	UBXD4_PREDICTED	XM_343034.2	XM_343034.2		362716	62650443	XM_343034.2	Ubxd4_predicted	XP_343035.2	ILMN_1352194	0002510746	S	2336	ACCAGAAGGTACAGTGGGGGTTTCTTGTATGTAGAGCACATGCCAGGGAG					PREDICTED: Rattus norvegicus UBX domain containing 4 (predicted) (Ubxd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559983-S	ILMN_299763	GTF2A1	NM_022208.1	NM_022208.1		83830	11559983	NM_022208.1	Gtf2a1	NP_071544.1	ILMN_1365200	0000780465	S	903	GAAAGATGGAGCCGAAGATGGGCAGGTGGAAGAAGAGCCCCTCAACAGCG	6	-	115184284-115184300:115188006-115188038	6q31	Rattus norvegicus general transcription factor II A, 1 (Gtf2a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12) [goid 5672] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tf2a; TfIIa	Tf2a; TfIIa
Rattus norvegicus	RefSeq	GI_47059003-S	ILMN_263237	RPL35	NM_212511.1	NM_212511.1		296709	47059003	NM_212511.1	Rpl35	NP_997676.1	ILMN_1358845	0006840136	S	8	TCGAACCGGGCGGCCTCATCCGCGAACAGCGCAGCAATGGCCAAGATTAA	3	-	18790651-18790666:18790911-18790913:18790914-18790944	3q11	Rattus norvegicus ribosomal protein L35 (Rpl35), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72958	MGC72958
Rattus norvegicus	RefSeq	GI_58865837-A	ILMN_271082	B3GNT7	NM_001012134.1	NM_001012134.1		316583	58865837	NM_001012134.1	B3gnt7	NP_001012134.1	ILMN_1376593	0004230736	S	2283	GAGGCGGCTCCAGGCCTTGGGAGGTGTGCCTCTTTTCTGTACACTTTCCA	9	+	85072944-85072993	9q35	Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 (B3gnt7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662110-S	ILMN_65270	LOC498570	XM_573844.1	XM_573844.1		498570	62662110	XM_573844.1	LOC498570	XP_573844.1	ILMN_1367732	0003360019	S	733	GTCCCCTGGCAGCTGAAAGCCCAACAGTGCGGTATTCGGAAGATCTGAGA					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498570), mRNA.					
Rattus norvegicus	RefSeq	GI_6978692-S	ILMN_272447	COX8H	NM_012786.1	NM_012786.1		25250	6978692	NM_012786.1	Cox8h	NP_036918.1	ILMN_1374366	0002810458	S	23	GGCCAAGGAAAGAGTGCGACCCCGAGAATCATGCCAAGGCTTCCCCCTAT	1	-	201058697-201058717:201058718-201058746	1q41	Rattus norvegicus Cytochrom c oxidase subunit VIII-H (heart/muscle) (Cox8h), mRNA.				CCO8A	CCO8A
Rattus norvegicus	RefSeq	GI_62654203-S	ILMN_68215	RGD1562949_PREDICTED	XM_236578.4	XM_236578.4		315969	109483893	XM_236578.4	RGD1562949_predicted	XP_236578.4	ILMN_1359384	0002760403	S	4560	GCCTGATGACTGCAGAGTTTTTATCGCAGAGGCTACGGCCCAGAACATGG	8	+	108355067-108355116	8q32	PREDICTED: Rattus norvegicus similar to mKIAA0259 protein (predicted) (RGD1562949_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652224-S	ILMN_58404	LOC314903	XM_235213.3	XM_235213.3		314903	62652224	XM_235213.3	LOC314903	XP_235213.3	ILMN_1355721	0000380066	S	3759	TCCAATGCTGCACCCCTGTAACGAAGGCAACACCTCACCCAACACTAGGC				7q22	PREDICTED: Rattus norvegicus similar to SLIT-ROBO Rho GTPase-activating protein 1 (LOC314903), mRNA.					
Rattus norvegicus	RefSeq	GI_11560118-S	ILMN_299599	CSNK1G1	NM_022288.1	NM_022288.1		64086	11560118	NM_022288.1	Csnk1g1	NP_071624.1	ILMN_1361703	0002810452	S	1522	CTGATCGGGTCCACACTAACCAGATGACAGGAGTGGGAGACAGAGCCTTC	8	+	70301492-70301541	8q24	Rattus norvegicus casein kinase 1, gamma 1 (Csnk1g1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62644715-S	ILMN_290004	LOC499749	NM_001024309.1	NM_001024309.1		499749	66730306	NM_001024309.1	LOC499749	NP_001019480.1	ILMN_1366676	0002470446	S	1858	GTCCCAAGGTGCTGTTGGACATTTCAGCCTCTACCTTTTGGGGAGTGGCC	3	+	3433534-3433583	3p13	Rattus norvegicus similar to RIKEN cDNA C430004E15 (LOC499749), mRNA.					
Rattus norvegicus	RefSeq	GI_62658799-S	ILMN_47943	CCT6A_PREDICTED	XM_213765.3	XM_213765.3		288620	62658799	XM_213765.3	Cct6a_predicted	XP_213765.2	ILMN_1368003	0001190731	S	2006	GAAGTTCTGCACCAACTCAGGCTACAGGAGACCCCGGCTCAAAAGAATAA				12q13	PREDICTED: Rattus norvegicus chaperonin subunit 6a (zeta) (predicted) (Cct6a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50657359-S	ILMN_285317	RASL11A	NM_001002829.1	NM_001002829.1		304268	50657359	NM_001002829.1	Rasl11a	NP_001002829.1	ILMN_1371931	0001980100	S	759	CTTCAGGCAAGCCCTGTCCTCCAAAGCAAAAGCAGCCTCCACCCTGGGCT	12	-	8705994-8706043	12p11	Rattus norvegicus RAS-like family 11 member A (Rasl11a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658391-S	ILMN_265339	SLC46A3	NM_001024968.1	NM_001024968.1		288454	68163402	NM_001024968.1	Slc46a3	NP_001020139.1	ILMN_1373766	0007040575	S	1524	CGCTTGGCGGCGTCACTTCGACCTCGGCGTATAATGGGATTTATTCAGCC	12	+	7713962-7714011	12p11	Rattus norvegicus solute carrier family 46, member 3 (Slc46a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC108818	MGC108818
Rattus norvegicus	RefSeq	GI_62657082-S	ILMN_64553	ARF4L_PREDICTED	XM_220933.3	XM_220933.3		303559	109489049	XM_220933.3	Arf4l_predicted	XP_220933.1	ILMN_1351705	0004920541	S	708	GAGATGATCCTGAAGAGGAAGAAGGCACCCCGGTCGAGCAAGAAGAGACG	10	+	90701976-90702025	10q32.1	PREDICTED: Rattus norvegicus ADP-ribosylation factor 4-like (predicted) (Arf4l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42627888-S	ILMN_272804	SCGB2A2	NM_203333.1	NM_203333.1		361725	42627888	NM_203333.1	Scgb2a2	NP_976078.1	ILMN_1355673	0000380451	S	898	CTGTTCCCTGTACGGTGCTAGGATACTCTGCAGTAGGAACTGAGGATGCC	1	+	212300901-212300950	1q43	Rattus norvegicus secretoglobin, family 2A, member 2 (Scgb2a2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence TAS]	Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]	MGC72333	MGC72333
Rattus norvegicus	RefSeq	GI_62650624-S	ILMN_69078	LOC500643	XM_576018.1	XM_576018.1		500643	62650624	XM_576018.1	LOC500643	XP_576018.1	ILMN_1348892	0006660593	S	1754	GAAACATTGACAAGGTAAGAAGGCATCTTTCCTTCTGGTTTTCCCTAGCC					PREDICTED: Rattus norvegicus similar to transmembrane 4 superfamily member 13 (LOC500643), mRNA.					
Rattus norvegicus	RefSeq	GI_62644428-S	ILMN_52613	LOC502597	XM_578084.1	XM_578084.1		502597	62644428	XM_578084.1	LOC502597	XP_578084.1	ILMN_1370829	0005550672	S	1281	GACTCAGGGCCAGCATTGGAACGGAAAAGCCCAGCTTCCTTCTTTCTGGC					PREDICTED: Rattus norvegicus similar to nephronectin (LOC502597), mRNA.					
Rattus norvegicus	RefSeq	GI_62644449-A	ILMN_293093	TSPAN5	NM_001004090.2	NM_001004090.2		362048	73663899	NM_001004090.2	Tspan5	NP_001004090.2	ILMN_1376901	0007000129	S	528	GCAAGCCGAGAGCGATGTGGTGTGCCATTCTCCTGCTGCACTAAAGACCC	2	+	236479139-236479188	2q44	Rattus norvegicus tetraspanin 5 (Tspan5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]		Tspan-5; Tm4sf9	Tspan-5; Tm4sf9
Rattus norvegicus	RefSeq	GI_11560054-S	ILMN_294091	KHDRBS3	NM_022249.1	NM_022249.1		64015	11560054	NM_022249.1	Khdrbs3	NP_071585.1	ILMN_1372851	0005550014	S	1100	AGGCTCCTTCGGCGAGGACAGCGAAGGGCGTCTACAGAGAGCAGCCATAT	7	+	106614474-106614523	7q34	Rattus norvegicus KH domain containing, RNA binding, signal transduction associated 3 (Khdrbs3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IDA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Slm2; Etle	Slm2; Etle
Rattus norvegicus	RefSeq	GI_67078533	ILMN_294190	TEKT3	NM_001024739.1	NM_001024739.1		287392	67078533	NM_001024739.1	Tekt3	NP_001019910.1	ILMN_1530490	0001770180	S	115	AGATTTACAAATTGTGTTTGAGCACCATGGAACCTCTAGGTTCTACTTTA	10	+	49247211-49247236:49247237-49247260	10q23	Rattus norvegicus tektin 3 (Tekt3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62654283-S	ILMN_49362	RGD1306603_PREDICTED	XM_343481.3	XM_343481.3		363144	109483951	XM_343481.3	RGD1306603_predicted	XP_343482.2	ILMN_1362285	0000360685	S	1184	TGCCAGCCTCCGTCTTCGTGGCAGAACCCTTGAGGTGAACGCTACACTGG	8	+	113266064-113266097:113266315-113266330	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D330022A01 gene (predicted) (RGD1306603_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485414-S	ILMN_273465	OLR1078	NM_207597.1	NM_207597.1		299593	46485414	NM_207597.1	Olr1078	NP_997480.1	ILMN_1374607	0000730086	S	479	GCTTGATGATGTTGGCGCTGCCCTTCTGCACACATCTGGAAATCCCACAC	7	-	12106361-12106410	7q11	Rattus norvegicus olfactory receptor 1078 (Olr1078), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-12106889-12105960_ORF	ratchr7-12106889-12105960_ORF
Rattus norvegicus	RefSeq	GI_53759108-A	ILMN_295557	CR1L	NM_001005330.1	NM_001005330.1		54243	53759109	NM_001005330.1	Cr1l	NP_001005330.1	ILMN_1376671	0003360035	S	1407	GGAATGTGAGGATGGGTATACTCTAGAAGGCAGTTCTCAGAGCCAGTGCC	13	-	111025670-111025719	13q27	Rattus norvegicus complement component (3b/4b) receptor 1-like (Cr1l), transcript variant 1, mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of complement activation [goid 45916] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of complement activation [goid 45916] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of complement activation [goid 45916] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Cr1	Cr1
Rattus norvegicus	RefSeq	GI_62653139-I	ILMN_266167	HOXC6	XM_001069410.1	XM_001069410.1		252885	109482991	XM_001069410.1	Hoxc6	XP_001069410.1	ILMN_1376070	0000510278	S	1665	CCTAGGCCTAGGGGACCTGAACCTCGCTTCAGATTCCACAGATGTCCCTC				7q36	PREDICTED: Rattus norvegicus homeo box C6, transcript variant 1 (Hoxc6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717708-S	ILMN_289993	LOC679867	XM_001054782.1	XM_001054782.1		679867	109513088	XM_001054782.1	LOC679867	XP_001054782.1	ILMN_1369039	0001660180	S	1909	ACGCGCCTCCCGGCGAGAAGGAGGAACACTCACACAGGCCCAAGAGGGGA	Un|NW_047863.1	-	31786-31835		PREDICTED: Rattus norvegicus hypothetical protein LOC679867 (LOC679867), mRNA.					
Rattus norvegicus	RefSeq	GI_62662154-S	ILMN_284334	LOC681618	XM_001057650.1	XM_001057650.1		681618	109503695	XM_001057650.1	LOC681618	XP_001057650.1	ILMN_1359775	0005860075	S	1374	CTATGGCTATGACACTGAGCGATGCTTTGACTGTCCTCACGGGGAAAGGG					PREDICTED: Rattus norvegicus similar to ankyrin repeat and SOCS box-containing protein 14 (LOC681618), mRNA.					
Rattus norvegicus	RefSeq	GI_62718171-S	ILMN_69159	LOC501309	XM_576722.1	XM_576722.1		501309	62718171	XM_576722.1	LOC501309	XP_576722.1	ILMN_1362668	0002470181	S	295	AGCACACAGAAGCACAGGCCAGAAGAGATGCCCAGGTGTTGAAGGAGGTC					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501309), mRNA.					
Rattus norvegicus	RefSeq	GI_62718153	ILMN_68369	LOC501301	XM_576714.1	XM_576714.1		501301	62718153	XM_576714.1	LOC501301	XP_576714.1	ILMN_1650020	0000630008	S	1	ATGGCAACTCCTGCACGTGCTCCAGAGTTGCTGCCGCCACAGAGCCTGCG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501301), mRNA.					
Rattus norvegicus	RefSeq	GI_58865957-A	ILMN_291341	RDH11	NM_001012193.1	NM_001012193.1		362757	58865957	NM_001012193.1	Rdh11	NP_001012193.1	ILMN_1376961	0007000039	S	982	AGACGGCTATGGGATGTCAGCTGTGACCTGCTGGGCCTCCCTATGGATTG	6	-	101947021-101947070	6q24	Rattus norvegicus retinol dehydrogenase 11 (all-trans/9-cis/11-cis) (Rdh11), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47777695-S	ILMN_302866	OLR917	NM_001001354.1	NM_001001354.1		288795	47777695	NM_001001354.1	Olr917	NP_001001354.1	ILMN_1364603	0004760112	S	849	CCCCTTCATCTACACACTTAGAAACAGGCAAGTCAAGCAAACCTTCGGTG	7	-	3973835-3973884	7q11	Rattus norvegicus olfactory receptor 917 (Olr917), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr917	Olr917
Rattus norvegicus	RefSeq	GI_47576156-S	ILMN_283636	OLR1370	NM_001000979.1	NM_001000979.1		405334	47576156	NM_001000979.1	Olr1370	NP_001000979.1	ILMN_1374525	0002470114	S	662	TAGCTTGTGCTGTTGTGAGAGTTTCCTCCACAGGAGGAAGATGGAAAGCC	10	-	12389017-12389066	10q12	Rattus norvegicus olfactory receptor 1370 (Olr1370), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639606-S	ILMN_59266	LOC499144	XM_574438.1	XM_574438.1		499144	62639606	XM_574438.1	LOC499144	XP_574438.1	ILMN_1361767	0001050292	S	1182	GCAACAAAGATTCATGGCCTTAGCGGGCAGAAGTTAGAACCCTGGCACGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933405K07 (LOC499144), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651654-S	ILMN_52631	SILV_PREDICTED	XM_343146.3	XM_343146.3		362818	109480138	XM_343146.3	Silv_predicted	XP_343147.1	ILMN_1365953	0001980368	S	1710	GCCTTGGGCAGGCTCCCTTGCTTGTAGGTGTCTTACTGGTGTTGGTGGCT	7	+	2017608-2017657	7q11	PREDICTED: Rattus norvegicus silver homolog (mouse) (predicted) (Silv_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643398-S	ILMN_68701	LOC310382	XM_227096.3	XM_227096.3		310382	62643398	XM_227096.3	LOC310382	XP_227096.3	ILMN_1363597	0006290739	S	1034	GGTGGGTAAACAGGTAGAAATGTGACCCTGTGTCCTACCCAATAAAGCTC				2q26	PREDICTED: Rattus norvegicus similar to Mki67 protein (LOC310382), mRNA.					
Rattus norvegicus	RefSeq	GI_62663275-S	ILMN_52143	LOC502116	XM_577558.1	XM_577558.1		502116	62663275	XM_577558.1	LOC502116	XP_577558.1	ILMN_1357539	0007000195	S	99	GCATCTACACGAAGTGAGAGCCGAGAAGCCACACTACAGAACACGCTGAG					PREDICTED: Rattus norvegicus similar to acidic ribosomal phosphoprotein P0 (LOC502116), mRNA.					
Rattus norvegicus	RefSeq	GI_34882790-S	ILMN_64444	LOC307328	XM_225836.2	XM_225836.2		307328	34882790	XM_225836.2	LOC307328	XP_225836.2	ILMN_1356419	0007040605	S	577	CAGGTCAATGTGTGCAGTTCACCAGAAGCGACGGGTGCAAAAAGTTCGGC					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC307328), mRNA.					
Rattus norvegicus	RefSeq	GI_62659792	ILMN_283064	FAM152A	NM_001013873.1	NM_001013873.1		289277	62078480	NM_001013873.1	Fam152a	NP_001013895.1	ILMN_1651135	0003120541	S	879	CAGCCAAGAACTCCAGGATGAACTGGAAGAAGCAGAGGACGCAGCCGCAT	13	+	93902801-93902850	13q25	Rattus norvegicus family with sequence similarity 152, member A (Fam152a), mRNA.				CGI-146	CGI-146
Rattus norvegicus	RefSeq	GI_45433568-S	ILMN_279024	EEF2	NM_017245.2	NM_017245.2		29565	45433568	NM_017245.2	Eef2	NP_058941.1	ILMN_1375111	0002650541	S	2718	TGGAGGCTGCTGGGGCCATCCTGACATCACTCAGCACTCACTTGCTACCA	7	-	10017210-10017259	7q11	Rattus norvegicus eukaryotic translation elongation factor 2 (Eef2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence TAS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence TAS]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ef-2	Ef-2
Rattus norvegicus	RefSeq	GI_62659055-S	ILMN_267129	RGD1306556_PREDICTED	XM_001080521.1	XM_001080521.1		288744	109497530	XM_001080521.1	RGD1306556_predicted	XP_001080521.1	ILMN_1368421	0005550687	S	1557	CGTGGATTGGCCTTTGGTGTGACAGTTGGCCTTCCTGCTCTCTGCGGACA				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein A530094D01 (predicted) (RGD1306556_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465526-S	ILMN_263634	REG3G	NM_173097.1	NM_173097.1		24620	27465526	NM_173097.1	Reg3g	NP_775120.1	ILMN_1361810	0003840204	S	429	CGAATCCTTCTTCTGTCTCTGGAAGTCACTGTGGGACCCTGACACGAGCC	4	-	112418731-112418780	4q34	Rattus norvegicus regenerating islet-derived 3 gamma (Reg3g), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	PAPIII; Pap3	PAPIII; Pap3
Rattus norvegicus	RefSeq	GI_62660047-S	ILMN_281108	CDC7_PREDICTED	XM_001062185.1	XM_001062185.1		360908	109500241	XM_001062185.1	Cdc7_predicted	XP_001062185.1	ILMN_1358194	0005900347	S	1648	CCATGCACCGGCCTCTCCGGCACAGCACTCGGAGGATTCCCTGTATAAAA				14p22	PREDICTED: Rattus norvegicus cell division cycle 7 (S. cerevisiae) (predicted) (Cdc7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667225-S	ILMN_50841	LOC503460	XM_579013.1	XM_579013.1		503460	62667225	XM_579013.1	LOC503460	XP_579013.1	ILMN_1350076	0001570577	S	471	AATGCTGTGCTACTGAGGACAAAGTACCTCGATGAGCGGGAGGCCTACTG					PREDICTED: Rattus norvegicus similar to 1700001F22Rik protein (LOC503460), mRNA.					
Rattus norvegicus	RefSeq	GI_62718862-S	ILMN_48012	LOC503419	XM_578957.1	XM_578957.1		503419	62718862	XM_578957.1	LOC503419	XP_578957.1	ILMN_1350987	0001580600	S	570	TACAAGCACATTCCAAGCTATATCTCCAGAGCACAGCAAATGGGGCCGCC					PREDICTED: Rattus norvegicus similar to vomeronasal V1r-type receptor V1rc41 (LOC503419), mRNA.					
Rattus norvegicus	RefSeq	GI_62650847-S	ILMN_57588	LOC503022	XM_578540.1	XM_578540.1		503022	62650847	XM_578540.1	LOC503022	XP_578540.1	ILMN_1371145	0001770670	S	1612	ACACCAACCTGGAGTGTGAATGTGGAGGAAGAGTGTCCTGGCTGCGAGCG					PREDICTED: Rattus norvegicus similar to zinc finger protein 277 (LOC503022), mRNA.					
Rattus norvegicus	RefSeq	GI_47576324-S	ILMN_280724	OLR922	NM_001000705.1	NM_001000705.1		404948	47576324	NM_001000705.1	Olr922	NP_001000705.1	ILMN_1364894	0002370647	S	806	CTAAAGGTGTAGCTTTGCTGTATACTTCAATTGCCCCTCTCTTGAATCCT	7	-	4113019-4113068	7q11	Rattus norvegicus olfactory receptor 922 (Olr922), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr922	Olr922
Rattus norvegicus	RefSeq	GI_62641676-S	ILMN_270596	ORAOV1_PREDICTED	XM_001066712.1	XM_001066712.1		309136	109463295	XM_001066712.1	Oraov1_predicted	XP_001066712.1	ILMN_1363134	0003290273	S	464	GCAGCCGGACTTCAAGGTGACTGCAGGGGGCTCTGGACTTGCATTTTGAG				1q42	PREDICTED: Rattus norvegicus oral cancer overexpressed 1 (predicted) (Oraov1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645921-S	ILMN_59359	PLCB1	XM_342524.3	XM_342524.3		24654	109468874	XM_342524.3	Plcb1	XP_342525.3	ILMN_1373798	0004920746	S	6519	ACTGTATCCCTGACACCTTTAAACTACTGAGAATAACGTGGTTGGCCGTG	3	+	123524826-123524875	3q36	PREDICTED: Rattus norvegicus phospholipase C, beta 1 (Plcb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence IEP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [evidence IEP]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13591978-S	ILMN_292199	LIFR	NM_031048.1	NM_031048.1		81680	13591978	NM_031048.1	Lifr	NP_112310.1	ILMN_1361712	0003850128	S	3193	TTTGGTCTCCCCAGATTCCCCAAGGTCCACAGACAGCAACAGTGAAGTTG	2	+	56476984-56477033	2q16	Rattus norvegicus leukemia inhibitory factor receptor alpha (Lifr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with leukemia inhibitory factor to initiate a change in cell activity [goid 4923] [evidence IMP]; Combining with leukemia inhibitory factor to initiate a change in cell activity [goid 4923] [evidence IEA]; Combining with leukemia inhibitory factor to initiate a change in cell activity [goid 4923] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_6980957-S	ILMN_287227	SLC2A4	NM_012751.1	NM_012751.1		25139	6980957	NM_012751.1	Slc2a4	NP_036883.1	ILMN_1368074	0002470154	S	2213	CTGACAGGGCAAGGATGGTAGAGCACATCAGTCTCCATTTGGGGCCCTGG	10	-	56786948-56786997	10q24	Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 4 (Slc2a4), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence ISS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IMP]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IDA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IMP]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]	Glut4; MGC93607	Glut4; MGC93607
Rattus norvegicus	RefSeq	GI_56090545-S	ILMN_286552	ICAM2	NM_001007725.1	NM_001007725.1		360647	56090545	NM_001007725.1	Icam2	NP_001007726.1	ILMN_1363977	0006370176	S	993	ACGGTGGGTCTCTCTACCGCCGCATCTCAGAGTACCAGAGCCTTGAAGTC	10	-	95773429-95773478	10q32.1	Rattus norvegicus intercellular adhesion molecule 2 (Icam2), mRNA.	A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95023	MGC95023
Rattus norvegicus	RefSeq	GI_62079270-S	ILMN_279252	RGD1305207	NM_001014267.1	NM_001014267.1		366990	62079270	NM_001014267.1	RGD1305207	NP_001014289.1	ILMN_1357131	0004050300	S	530	GCTGTGTTGGAGGCTTTGGCTGCCTTGGCTCCCGTGAATGTTGAACCCCT	7	+	140202666-140202708:140202709-140202715	7q36	Rattus norvegicus similar to RIKEN cDNA 1700011A15 (RGD1305207), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653502-S	ILMN_56218	ROBO3_PREDICTED	XM_236056.3	XM_236056.3		315564	62653502	XM_236056.3	Robo3_predicted	XP_236056.3	ILMN_1353622	0003450021	S	5084	TGATGGTAAGGAGAGCCAGGGCAATGGGAGGGGCCTGGAGGCTTGCAGAA				8q21	PREDICTED: Rattus norvegicus roundabout homolog 3 (Drosophila) (predicted) (Robo3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605837-S	ILMN_291331	CNOT8	NM_001008382.1	NM_001008382.1		363603	56605837	NM_001008382.1	Cnot8	NP_001008383.1	ILMN_1372058	0000430324	S	1961	GTTTGGAAGGCAGAGGCAGATGGCAGCAGCTCACTTAGGCAGGAATGGTC	10	+	43751667-43751716	10q22	Rattus norvegicus CCR4-NOT transcription complex, subunit 8 (Cnot8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]	MGC94581	MGC94581
Rattus norvegicus	Unigene	Rn.8955	ILMN_161018	RN.8955	Rn.8955		Rn.8955		21991335	BQ782863			ILMN_1530200	0001050041	S	126	CCGCCATGATTAGATAAACATACAATAAAGAACACGACATTCTTAAGAGT					UI-R-FF0-cpl-f-13-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cpl-f-13-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62646094-S	ILMN_68114	BPIL3_PREDICTED	XM_230756.4	XM_230756.4		311558	109469066	XM_230756.4	Bpil3_predicted	XP_230756.4	ILMN_1367855	0004150021	S	1354	TGCAAGACGCTGCCAACTGCCCTCACTGCCGTCATTCTGAACCTGCAGAG	3	+	144297332-144297381	3q41	PREDICTED: Rattus norvegicus bactericidal/permeability-increasing protein-like 3 (predicted) (Bpil3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641587-S	ILMN_47807	PSMD13_PREDICTED	XM_344976.3	XM_344976.3		365388	109459582	XM_344976.3	Psmd13_predicted	XP_344977.2	ILMN_1350695	0000460672	S	1435	AACAAGGTGGAGCTGTTGGTGATGAAGGCACTCTCGGTGGGGCTGGTGAG	1	+	201055837-201055842:201055953-201055996	1q41	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 (predicted) (Psmd13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576096-S	ILMN_266613	OLR1400	NM_001001096.1	NM_001001096.1		405991	47576096	NM_001001096.1	Olr1400	NP_001001096.1	ILMN_1361367	0004780097	S	729	CCTCACTGTGGTTGCCATGTTTTATGGCTCAGCTATCTACACATACCTCC	10	+	34970091-34970140	10q22	Rattus norvegicus olfactory receptor 1400 (Olr1400), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1400	Olr1400
Rattus norvegicus	RefSeq	GI_62645046-S	ILMN_61868	ARPC5L_PREDICTED	XM_216047.2	XM_216047.2		296710	62645046	XM_216047.2	Arpc5l_predicted	XP_216047.2	ILMN_1359645	0005420673	S	1636	ACCCCAATAATGGCAGTCAGCTATGAGCCCTAAAGCAAGTGCTCCTGAGC				3q11	PREDICTED: Rattus norvegicus actin related protein 2/3 complex, subunit 5-like (predicted) (Arpc5l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652320-A	ILMN_267211	SPAG1	NM_001012116.1	NM_001012116.1		315033	58865801	NM_001012116.1	Spag1	NP_001012116.1	ILMN_1376354	0003190270	S	3499	GCCACCCTAGCCAATAGTTGCTATTCACACGCCCTTCCCAATCTGTTTTC	7	+	71759221-71759270	7q22	Rattus norvegicus sperm associated antigen 1 (Spag1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665329-S	ILMN_66368	RGD1306101_PREDICTED	XM_214698.4	XM_214698.4		292051	109508120	XM_214698.4	RGD1306101_predicted	XP_214698.3	ILMN_1365837	0006290528	S	2423	GCCTGCGCCGAGCACCTCATCAAACTGCCTTCTCTCAAGCAGCTCAACCT	19	+	47567648-47567697	19q12	PREDICTED: Rattus norvegicus similar to 4933407C03Rik protein (predicted) (RGD1306101_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576210-S	ILMN_275703	OLR1337	NM_001000480.1	NM_001000480.1		300637	47576210	NM_001000480.1	Olr1337	NP_001000480.1	ILMN_1352363	0000870301	S	788	CAAGCTCCACGGGCACGGGGGCGGGCGCTCCAGCAGTCTTCTACACAATA	8	+	42967034-42967083	8q22	Rattus norvegicus olfactory receptor 1337 (Olr1337), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1337; ratchr8-42975013-42975966_ORF	Olr1337; ratchr8-42975013-42975966_ORF
Rattus norvegicus	RefSeq	GI_62652412-S	ILMN_67948	TRPS1_PREDICTED	XM_235264.3	XM_235264.3		299897	62652412	XM_235264.3	Trps1_predicted	XP_235264.3	ILMN_1349929	0006900273	S	2402	TGGAGAGGGCAAGACCAAGGACGAATCCCAGTCGCTGTTACGGGCTGTGA				7q31	PREDICTED: Rattus norvegicus trichorhinophalangeal syndrome I (predicted) (Trps1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865559-A	ILMN_282470	ATP6V1C1	NM_001011992.1	NM_001011992.1		299971	58865559	NM_001011992.1	Atp6v1c1	NP_001011992.1	ILMN_1376957	0001400053	S	1531	CCTGTGTTACTGTAGTGCACAGCCTTGTTTACAGGGAATGGTGTGAGCAG	7	+	74378593-74378642	7q22	Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit C1 (Atp6v1c1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence ISS]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]	MGC109315	MGC109315
Rattus norvegicus	RefSeq	GI_62661163-S	ILMN_64475	LOC498462	XM_579826.1	XM_579826.1		498462	62661163	XM_579826.1	LOC498462	XP_579826.1	ILMN_1372762	0001980168	S	747	CTAAAATCCTCTAGCATGAGGATGTAGCGCAGCCCAGGATGAGAGCTCCC					PREDICTED: Rattus norvegicus LOC498462 (LOC498462), mRNA.					
Rattus norvegicus	RefSeq	GI_62655332-A	ILMN_270328	SP140	NM_001012133.1	NM_001012133.1		316580	58865835	NM_001012133.1	Sp140	NP_001012133.1	ILMN_1376263	0001770707	S	2733	AGAGGATTGCTCTGGGTCACATGGAGACAGGTGCATCTGGGACCTCCTGG	9	+	84336877-84336926	9q35	Rattus norvegicus SP140 nuclear body protein (Sp140), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641298-S	ILMN_276798	SEZ6L2_PREDICTED	XM_001078063.1	XM_001078063.1		308988	109462873	XM_001078063.1	Sez6l2_predicted	XP_001078063.1	ILMN_1364669	0002480161	S	3784	CCCATGAGGGGGCTTTGATGGCCCTGGAGACCCTACAGTAAATAAACCAG				1q36	PREDICTED: Rattus norvegicus seizure related 6 homolog (mouse)-like 2 (predicted) (Sez6l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978534-S	ILMN_282244	AR	NM_012502.1	NM_012502.1		24208	6978534	NM_012502.1	Ar	NP_036634.1	ILMN_1353640	0005550110	S	3781	CTTCTCTGGCATGGGCCTTGGGGGAAATTCCTCTACTGATGTACAGTCTG	X	+	86118843-86118892	Xq31	Rattus norvegicus androgen receptor (Ar), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The determination of sex and sexual phenotypes in a male organism's soma [goid 19102] [evidence IEA]; The determination of sex and sexual phenotypes in a male organism's soma [goid 19102] [evidence ISS]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence IMP]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence IEA]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The establishment of the sex of a male organism by physical differentiation [goid 46661] [evidence IMP]; Any process that modulates the activity of an enzyme [goid 50790] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an androgen to initiate a change in cell activity [goid 4882] [evidence IDA]; Combining with an androgen to initiate a change in cell activity [goid 4882] [evidence IEA]; Combining with an androgen to initiate a change in cell activity [goid 4882] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any androgen, male sex hormones [goid 5497] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tfm; Andr	Tfm; Andr
Rattus norvegicus	RefSeq	GI_62647319-S	ILMN_61426	LOC368066	XM_347233.3	XM_347233.3		368066	109472089	XM_347233.3	LOC368066	XP_347234.2	ILMN_1358374	0002970091	S	161	TGCAGAACCTCTACCAGACCTTCTCTACAGGAGGTGTAGGGGGAGATGTC	4	-	83936871-83936891:83938103-83938131	4q24	PREDICTED: Rattus norvegicus similar to indolethylamine N-methyltransferase (LOC368066), mRNA.					
Rattus norvegicus	RefSeq	GI_56090567	ILMN_297666	FBXO30	NM_001007690.1	NM_001007690.1		308283	56090567	NM_001007690.1	Fbxo30	NP_001007691.1	ILMN_1650644	0004230524	S	2389	CCCGTACTGTAAAACTGTGACTTCACTTGCACAGCATGCAAGCAGCTGGC	1	+	5990395-5990406:5990407-5990444	1p13	Rattus norvegicus F-box protein 30 (Fbxo30), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94907	MGC94907
Rattus norvegicus	RefSeq	GI_62648519-S	ILMN_282799	MSC_PREDICTED	XM_001063707.1	XM_001063707.1		312897	109476008	XM_001063707.1	Msc_predicted	XP_001063707.1	ILMN_1355183	0000630435	S	501	TAGCTATGTGCACCCCGTGAACCTGACGTGGCCATTCGTGGTCTCTGGAC				5q11	PREDICTED: Rattus norvegicus musculin (predicted) (Msc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39930506-S	ILMN_287446	KCNK15	NM_130813.1	NM_130813.1		156873	39930506	NM_130813.1	Kcnk15	NP_570826.1	ILMN_1366063	0004280086	S	2287	TGGAAGGCCAAGAGAACCATTGCAGGGGACGGGAAAGGGGTCTAAGGCTC	3	+	154779042-154779091	3q42	Rattus norvegicus potassium channel, subfamily K, member 15 (Kcnk15), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664816-S	ILMN_63161	GPR97_PREDICTED	XM_226243.4	XM_226243.4		291854	109507693	XM_226243.4	Gpr97_predicted	XP_226243.3	ILMN_1354577	0001090603	S	1483	ATGACCTGGGGACTGGCTGTTCTCACACCCCTCGGCTTGTCTACCGTCTA	19	-	10410997-10411046	19p13	PREDICTED: Rattus norvegicus G protein-coupled receptor 97 (predicted) (Gpr97_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.8045	ILMN_160843	RN.8045	Rn.8045		Rn.8045		28862775	CB328117			ILMN_1530213	0004560181	S	118	GTTAAAGACTCCAATCTACATACACACATCCATTAACTATTTTCTCCTAG					UI-R-FS0-cry-p-06-0-UI.s1 UI-R-FS0 Rattus norvegicus cDNA clone UI-R-FS0-cry-p-06-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62661292-S	ILMN_50922	RGD1559923_PREDICTED	XM_573749.2	XM_573749.2		498489	109501546	XM_573749.2	RGD1559923_predicted	XP_573749.1	ILMN_1349174	0002630040	S	4115	CAGGTTGGCAGTGCACCAGTTACTTTTCAGTACACGTCCACATGACTAGG	15	+	25173696-25173745	15p14	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 35 (predicted) (RGD1559923_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655293-S	ILMN_55292	LOC501173	XM_576600.1	XM_576600.1		501173	62655293	XM_576600.1	LOC501173	XP_576600.1	ILMN_1366636	0001500300	S	2550	GGGAACCGGCGCTCAGTCTAATGGTTGGCTGTGAGCATCCACCTCTGTAT					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC501173), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641807-S	ILMN_283735	FKBP2_PREDICTED	XM_001072401.1	XM_001072401.1		293702	109463453	XM_001072401.1	Fkbp2_predicted	XP_001072401.1	ILMN_1364050	0003440601	S	415	CAGGGGCTACTGGGGATGTGTGAAGGGGAAAAGCGGAAGCTAGTGATCCC				1q43	PREDICTED: Rattus norvegicus FK506 binding protein 2 (predicted) (Fkbp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651861-S	ILMN_63300	LOC500816	XM_580125.1	XM_580125.1		500816	62651861	XM_580125.1	LOC500816	XP_580125.1	ILMN_1366401	0005270497	S	454	AGTCGAGGGGATGTCCCGGGTGACAGTGAAGACCAGCCCTAAGCTGCAGA					PREDICTED: Rattus norvegicus LOC500816 (LOC500816), mRNA.					
Rattus norvegicus	RefSeq	GI_60223056-S	ILMN_302066	SUPV3L1	NM_001012462.1	NM_001012462.1		294385	60223056	NM_001012462.1	Supv3l1	NP_001012480.1	ILMN_1366899	0000070707	S	2142	TGGCACTAAAACAGGGAATAAGGCGGCAGAGCCACCCAGCCCCAGTGACA				20q11	Rattus norvegicus suppressor of var1, 3-like 1 (S. cerevisiae) (Supv3l1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands [goid 32508] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix [goid 3678] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC109049	MGC109049
Rattus norvegicus	RefSeq	GI_62664859-S	ILMN_65277	LOC502186	XM_577644.1	XM_577644.1		502186	62664859	XM_577644.1	LOC502186	XP_577644.1	ILMN_1352495	0005050239	S	118	ATGGTGTTAGGCATATTGCCTCTTGTACGAGAATCTGCCGAGATGCCGCC				19p13	PREDICTED: Rattus norvegicus similar to Ab1-108 (LOC502186), mRNA.					
Rattus norvegicus	RefSeq	GI_62645456-S	ILMN_270917	COMMD9	NM_001033692.1	NM_001033692.1		295956	76096327	NM_001033692.1	Commd9	NP_001028864.1	ILMN_1370105	0004200731	S	818	GAGGTAAACCGCCTTCGGCCATGCAAAGGAGCAGGTTCTTCATCAGCCGC	3	+	87055288-87055337	3q31	Rattus norvegicus COMM domain containing 9 (Commd9), mRNA.				MGC124765	MGC124765
Rattus norvegicus	RefSeq	GI_62638724-S	ILMN_63521	LOC502261	XM_580243.1	XM_580243.1		502261	62638724	XM_580243.1	LOC502261	XP_580243.1	ILMN_1355857	0001050167	S	284	AGCCATGAGCATCTGCACACTTTTTCACAAAGCTCGAGTGCAGAATGTCC					PREDICTED: Rattus norvegicus LOC502261 (LOC502261), mRNA.					
Rattus norvegicus	RefSeq	GI_62657078	ILMN_301655	TMEM106A	NM_001024967.1	NM_001024967.1		287722	68163400	NM_001024967.1	Tmem106a	NP_001020138.1	ILMN_1650719	0002100053	S	1353	CTTGACATTGTCTTGGGACTGAGCATGTTGGTTACCCAGCTCCACCCGGG	10	+	90610276-90610325	10q32.1	Rattus norvegicus transmembrane protein 106A (Tmem106a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC108779; RGD1309043	MGC108779; RGD1309043
Rattus norvegicus	RefSeq	GI_62658538-S	ILMN_265262	MGC125214	XM_001065453.1	XM_001065453.1		304332	109496558	XM_001065453.1	MGC125214	XP_001065453.1	ILMN_1349881	0006510082	S	3147	GTGGGTGCAATGTCCTGGTGTTGTTTCTCAGTGTTAGTGATGCCCGTGGG				12q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20397 (MGC125214), mRNA.					
Rattus norvegicus	RefSeq	GI_62658692-S	ILMN_63397	LOC501828	XM_577240.1	XM_577240.1		501828	62658692	XM_577240.1	LOC501828	XP_577240.1	ILMN_1349148	0002680204	S	474	GTTCTGCATCCCACACATCCAACCGAGAAGACAAGGTGTGACACTCACCC				12q12	PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (LOC501828), mRNA.					
Rattus norvegicus	RefSeq	GI_62661286	ILMN_50555	RGD1562018_PREDICTED	XM_341306.3	XM_341306.3		361030	109501558	XM_341306.3	RGD1562018_predicted	XP_341307.3	ILMN_1650541	0003390538	S	621	GGACAGACGGAAGTCGTCAGTAGTATGGCTTTTCACTGGGATGCTTTGCG	15	+	24451399-24451448	15p14	PREDICTED: Rattus norvegicus similar to Protein C14orf101 homolog (predicted) (RGD1562018_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646521-S	ILMN_67055	RGD1559760_PREDICTED	XM_575300.2	XM_575300.2		499952	109469360	XM_575300.2	RGD1559760_predicted	XP_575300.1	ILMN_1351520	0007040592	S	630	AGATGCGGCGCTTGGTGGCCTATCTCAACCAAGGCCAGAGCCTCGCGGCA	3	-	169887876-169887925	3q43	PREDICTED: Rattus norvegicus similar to basic helix-loop-helix transcriptional regulator beta4 (predicted) (RGD1559760_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656174-S	ILMN_52473	RGD1560728_PREDICTED	XM_573103.2	XM_573103.2		497916	109488242	XM_573103.2	RGD1560728_predicted	XP_573103.2	ILMN_1364818	0003060670	S	1366	AGCCTGCCGTGTCACTTCAACCCCAGCGTGAACCTCTTGGGTAGCTTTCG	10	+	46879279-46879328	10q22	PREDICTED: Rattus norvegicus similar to Smith-Magenis syndrome chromosome region, candidate 7 homolog (human) (predicted) (RGD1560728_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645605-S	ILMN_263929	DNAJC17_PREDICTED	XM_230468.3	XM_230468.3		311329	62645605	XM_230468.3	Dnajc17_predicted	XP_230468.2	ILMN_1364522	0006510170	S	641	AAAAGAAGGCAGGCAACGCCATAGTGGAGTTTGCAACTGTCAGAGCGGCG	3	-	105694445-105694445:105694897-105694945	3q35	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 17 (predicted) (Dnajc17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50054265-S	ILMN_302790	NLN	NM_053970.2	NM_053970.2		117041	50054265	NM_053970.2	Nln	NP_446422.2	ILMN_1361076	0004590601	S	2586	TCCGAGCCCTGTGTCAACCTTGACCCTCTGCCTCAGAGCTAGGCGACAGT	2	-	34915155-34915204	2q13	Rattus norvegicus neurolysin (metallopeptidase M3 family) (Nln), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638860-S	ILMN_47715	ZFP580_PREDICTED	XM_218196.4	XM_218196.4		308336	109457950	XM_218196.4	Zfp580_predicted	XP_218196.3	ILMN_1353474	0005290037	S	839	CTGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGG	1	-	67525977-67526026	1q12	PREDICTED: Rattus norvegicus zinc finger protein 580 (predicted) (Zfp580_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577716-S	ILMN_276038	OLR584	NM_001000661.1	NM_001000661.1		404861	47577716	NM_001000661.1	Olr584	NP_001000661.1	ILMN_1352049	0002640576	S	221	CCACTGCAGTTGGTCCCAAGATGCTTGTAGACCTCCTGTCCAAGAACAGG	3	-	71503243-71503292	3q24	Rattus norvegicus olfactory receptor 584 (Olr584), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr584	Olr584
Rattus norvegicus	RefSeq	GI_62654193-S	ILMN_285965	LOC300963	NM_001037772.1	NM_001037772.1		300963	83642827	NM_001037772.1	LOC300963	NP_001032861.1	ILMN_1373327	0004780110	S	1642	GAGGAGCTGAGGTCTCACCACATTCTAGAGCGCCTGGACGCCCACATTGA	8	-	107548827-107548876	8q32	Rattus norvegicus similar to centrosome protein Cep63 (LOC300963), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC114577	MGC114577
Rattus norvegicus	RefSeq	GI_47577886-S	ILMN_299731	OLR1165	NM_001000868.1	NM_001000868.1		405165	47577886	NM_001000868.1	Olr1165	NP_001000868.1	ILMN_1360036	0001240068	S	870	CAGCCTGAGGAACAGGGATATGAAGAAAGCTGTCCAAAGTGTTTTCAGGC	8	+	18410551-18410600	8q13	Rattus norvegicus olfactory receptor 1165 (Olr1165), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1165	Olr1165
Rattus norvegicus	RefSeq	GI_62663917-S	ILMN_276583	LOC684921	XM_001072492.1	XM_001072492.1		684921	109506189	XM_001072492.1	LOC684921	XP_001072492.1	ILMN_1354032	0004850066	S	769	TTTGAAGGTTGGGCGGGGACCTCCTCAGAGCCGAAAACAATCCCCCTTCG					PREDICTED: Rattus norvegicus similar to Complement C1q-like protein 3 precursor (Gliacolin) (LOC684921), mRNA.					
Rattus norvegicus	RefSeq	GI_62656728-S	ILMN_295025	RGD1306862_PREDICTED	XM_213430.3	XM_213430.3		287596	62656728	XM_213430.3	RGD1306862_predicted	XP_213430.2	ILMN_1354255	0005050309	S	2975	GAGTCCTCAGAGCAGTTACACAATGAGTCTTCCAGCCGCTCCGCCCCTGA	10	-	75348122-75348146:75348147-75348171	10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200011M11 (predicted) (RGD1306862_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981061-S	ILMN_265774	HTR5A	NM_013148.1	NM_013148.1		25689	6981061	NM_013148.1	Htr5a	NP_037280.1	ILMN_1372179	0003120025	S	1699	CAGTCTGAGCTGTCTGACACAGACTTAGCAACAGCAATGCACTAGAGAGG	4	-	2707468-2707517	4q11	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 5A (Htr5a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IPI]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 16609] [evidence IDA]	5HT5A; 5	5HT5A; 5
Rattus norvegicus	RefSeq	GI_62646978-S	ILMN_262749	LOC691569	XM_001078865.1	XM_001078865.1		691569	109513635	XM_001078865.1	LOC691569	XP_001078865.1	ILMN_1352010	0004210471	S	864	GGCCGTACTTTCACCTCAGCCTCTCCAACTAATGTGCACTTTTTGAGGGA	Un|NW_047892.1	+	1161225-1161274		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC691569), mRNA.					
Rattus norvegicus	RefSeq	GI_62657330-S	ILMN_271754	RGD1311422_PREDICTED	XM_001081678.1	XM_001081678.1		287822	109492219	XM_001081678.1	RGD1311422_predicted	XP_001081678.1	ILMN_1354313	0007040368	S	3131	GAAGACTGCGGCGTGTGCATTAGGAGCCTGAAGTAGGGTATCGAGGGTGC				10q32.3	PREDICTED: Rattus norvegicus similar to CG8841-PA (predicted) (RGD1311422_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649607-S	ILMN_265050	FHL3_PREDICTED	XM_001056311.1	XM_001056311.1		313582	109477200	XM_001056311.1	Fhl3_predicted	XP_001056311.1	ILMN_1368369	0000430239	S	1349	TTAGGGGCTCCCTGGTTAGAGGGTTGTAAGGTACAGGGTGCTGTTCAGCC				5q36	PREDICTED: Rattus norvegicus four and a half LIM domains 3 (predicted) (Fhl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638267-S	ILMN_63706	LOC308253	XM_218114.3	XM_218114.3		308253	62638267	XM_218114.3	LOC308253	XP_218114.3	ILMN_1366886	0000730341	S	2227	TGCTAGGATGGTACCTTTCAATTGGAAATGGTTTTCCACGGCTGCCCTGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC308253), mRNA.					
Rattus norvegicus	RefSeq	GI_62657226-S	ILMN_49949	ADAM11_PREDICTED	XM_340916.3	XM_340916.3		360638	109489121	XM_340916.3	Adam11_predicted	XP_340917.3	ILMN_1353836	0002100438	S	2208	TTCAACTTCAGCACCTGCCCCGGAAGCGGAGAGCGACGGATCTGCTCCCA	10	+	91895652-91895701	10q32.1	PREDICTED: Rattus norvegicus a disintegrin and metallopeptidase domain 11 (predicted) (Adam11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659715-S	ILMN_65617	LOC498276	XM_573502.1	XM_573502.1		498276	62659715	XM_573502.1	LOC498276	XP_573502.1	ILMN_1355544	0005340215	S	1454	GGCTGGGGGTTGGTGGCACAGTTTTTATCCAGGACACATGATGCTCTGGA					PREDICTED: Rattus norvegicus similar to Fc gamma (IgG) receptor II (low affinity) alpha precursor - rat (LOC498276), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527056-S	ILMN_273902	RGD1307465	NM_001009655.1	NM_001009655.1		296200	57527056	NM_001009655.1	RGD1307465	NP_001009655.1	ILMN_1366671	0006860427	S	1716	TCCTTACCAGAGAAGCCCCAGCAGTAGGAAGCCTGAGTGTGGAAGTCACC	3	+	132806359-132806408	3q41	Rattus norvegicus similar to RIKEN cDNA 8430406I07 (RGD1307465), mRNA.				MGC105769	MGC105769
Rattus norvegicus	RefSeq	GI_58865983-A	ILMN_292311	TRAF3IP1	NM_001012204.1	NM_001012204.1		363286	58865983	NM_001012204.1	Traf3ip1	NP_001012204.1	ILMN_1376526	0006040341	S	1926	AGTGCGGTGGAGCCCCTGAAGGCTGAGCTGTCTGAGCTGGAACAACAGAT	9	+	90746978-90747027	9q36	Rattus norvegicus TNF receptor-associated factor 3 interacting protein 1 (Traf3ip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62666904-S	ILMN_55324	LOC501573	XM_576977.1	XM_576977.1		501573	62666904	XM_576977.1	LOC501573	XP_576977.1	ILMN_1358793	0003780722	S	739	GAGTGAAGACTCCCAGCTCAAAGGACCAAAAAGTCTCCAGCAATCAAATC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC501573), mRNA.					
Rattus norvegicus	RefSeq	GI_62649195-S	ILMN_267522	RGD1561827_PREDICTED	XM_578465.1	XM_578465.1		502960	62649195	XM_578465.1	RGD1561827_predicted	XP_578465.1	ILMN_1363577	0002970037	S	324	CCATCTCAGAGACCTCAAAGACTGTCAGAATCAGCAGGTTGGAGAGCAGG	5	-	108020946-108020995	5q32	PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (predicted) (RGD1561827_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644682-S	ILMN_278132	LOC687026	XM_001076778.1	XM_001076778.1		687026	109469490	XM_001076778.1	LOC687026	XP_001076778.1	ILMN_1355216	0000840368	S	400	CGGCACAATTCAACAGGCCTGGGCAATGTTTCAGTGAGCTTGGTACCTCC					PREDICTED: Rattus norvegicus similar to neurexophilin 2 (LOC687026), mRNA.					
Rattus norvegicus	RefSeq	GI_62654697-S	ILMN_47933	RGD1562008_PREDICTED	XM_236927.4	XM_236927.4		316228	109485712	XM_236927.4	RGD1562008_predicted	XP_236927.4	ILMN_1350993	0006840292	S	7461	CTACGATGAGGAGTCTGAGAACCTGGACCGAGAGACCTTCTTCTTTGGCG	9	+	9863143-9863192	9q12	PREDICTED: Rattus norvegicus similar to p53-associated parkin-like cytoplasmic protein (predicted) (RGD1562008_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639766-S	ILMN_290197	SYNGR4	NM_001025644.1	NM_001025644.1		292916	71043749	NM_001025644.1	Syngr4	NP_001020815.1	ILMN_1375118	0000110270	S	847	TGAGTTACAGCAGCTCAGCCCTGTCCCCCTACATGACTGCTCCAAAGGCC	1	-	96362291-96362340	1q22	Rattus norvegicus synaptogyrin 4 (Syngr4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC114469	MGC114469
Rattus norvegicus	RefSeq	GI_62641365	ILMN_282125	TIAL1	NM_001013193.1	NM_001013193.1		361655	61557245	NM_001013193.1	Tial1	NP_001013211.1	ILMN_1649865	0002810133	S	1259	GATCAATCACCTTCTGCTGCTTGGATGGGTGGATTTGGTGCTCAGCCTCC	1	-	187687622-187687670:187688854-187688854	1q36	Rattus norvegicus Tia1 cytotoxic granule-associated RNA binding protein-like 1 (Tial1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types [goid 17145] [evidence IEA]; The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types [goid 17145] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence ISS]	MGC109552; Tial1	MGC109552; Tial1
Rattus norvegicus	RefSeq	GI_62718293-S	ILMN_52529	LOC501352	XM_576763.1	XM_576763.1		501352	62718293	XM_576763.1	LOC501352	XP_576763.1	ILMN_1374657	0003060309	S	134	CACATCTTTGCCTCTTCCACGCTGGGAGAGAAACATCATCCCTGGCACTG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501352), mRNA.					
Rattus norvegicus	RefSeq	GI_62718141-S	ILMN_67667	LOC363314	XM_343654.2	XM_343654.2		363314	62718141	XM_343654.2	LOC363314	XP_343655.2	ILMN_1374705	0002100300	S	101	TCTATACAGCGCCCTGTTTGACTGGACGGCTAGTCTTCCCAGGAGGCCCC				19q11	PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC363314), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577580-S	ILMN_284107	OLR522	NM_001000562.1	NM_001000562.1		366100	47577580	NM_001000562.1	Olr522	NP_001000562.1	ILMN_1352799	0005360528	S	278	CCTTCATGGGATGCTTTACCCAATTGTTTTTCTTTGCCCTCTTGGTAGCT	3	-	70113755-70113804	3q24	Rattus norvegicus olfactory receptor 522 (Olr522), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr522; ratchr3-70010454-70009507_ORF	Olr522; ratchr3-70010454-70009507_ORF
Rattus norvegicus	RefSeq	GI_62643203-S	ILMN_59095	LOC502521	XM_578005.1	XM_578005.1		502521	62643203	XM_578005.1	LOC502521	XP_578005.1	ILMN_1370271	0004760446	S	8	ATCAAAGAAGACCTGTGGGTTTGGGGTTGAGGGGCTCGATGCTGGGGATG					PREDICTED: Rattus norvegicus similar to putative DNA-directed RNA polymerase,possible RNA polymerase A/beta/A subunit, long PHYSPTS repeat at C-terminus (LOC502521), mRNA.					
Rattus norvegicus	RefSeq	GI_62638876-S	ILMN_48526	LOC308344	XM_218220.3	XM_218220.3		308344	62638876	XM_218220.3	LOC308344	XP_218220.3	ILMN_1372543	0006400088	S	1995	CCGACTGTAAGGCGCAGAGTGCTGAGAACACCGAGGGACTGCCTACAAGA				1q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930401F20 (predicted) (LOC308344), mRNA.					
Rattus norvegicus	RefSeq	GI_62647454-S	ILMN_67577	RGD1563048_PREDICTED	XM_575548.2	XM_575548.2		500196	109472171	XM_575548.2	RGD1563048_predicted	XP_575548.1	ILMN_1366753	0006860520	S	127	GCCAAGAGGTTCAATGTGCAGACTGAGCACATCAAGCACTCAAAGAGCAG	4	+	104008772-104008821	4q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1563048_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576968-S	ILMN_266304	OLR260	NM_001000946.1	NM_001000946.1		405290	47576968	NM_001000946.1	Olr260	NP_001000946.1	ILMN_1372291	0004050131	S	251	GCTTCATTGTACATGGAGCAGTCCTCTCTGTGCATGCCTGTGAAGCACAG	1	+	165804859-165804908	1q33	Rattus norvegicus olfactory receptor 260 (Olr260), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr260	Olr260
Rattus norvegicus	RefSeq	GI_62654872-S	ILMN_56586	LOC503244	XM_578775.1	XM_578775.1		503244	62654872	XM_578775.1	LOC503244	XP_578775.1	ILMN_1350001	0004480139	S	366	GAGGAGAGCCTGGCTTCACTGCAGGTGCAGAAGTATATAACTGTGGAGAC					PREDICTED: Rattus norvegicus similar to OTTHUMP00000039916 (LOC503244), mRNA.					
Rattus norvegicus	RefSeq	GI_62653830-S	ILMN_275562	RGD1565748_PREDICTED	XM_001076555.1	XM_001076555.1		300790	109484891	XM_001076555.1	RGD1565748_predicted	XP_001076555.1	ILMN_1360878	0006380064	S	477	GAGACATCAGTCGTCTTTCTACCAGACCCCCAGGAAACTGAGAGCTAGGG				8q24	PREDICTED: Rattus norvegicus similar to organic solute transporter beta (predicted) (RGD1565748_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657349-S	ILMN_273654	RGD1309310_PREDICTED	XR_009492.1	XR_009492.1		303677	109492243	XR_009492.1	RGD1309310_predicted		ILMN_1356213	0002970368	S	5165	TGACCATAAGTCATCCACACAGGACCCTGCCCATGCACTGTGGCCCCTGT				10q32.3	PREDICTED: Rattus norvegicus similar to mKIAA0195 protein (predicted) (RGD1309310_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648976-S	ILMN_283611	RGD1308165_PREDICTED	XM_001055826.1	XM_001055826.1		362516	109476485	XM_001055826.1	RGD1308165_predicted	XP_001055826.1	ILMN_1362575	0001850053	S	1597	TCCAGCCGTGGCGGTTTCAGTAGAAGTAGGGATGTAACAACTGGAGGGCT				5q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC17337 (predicted) (RGD1308165_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078636-S	ILMN_293716	LCA5	NM_001013954.1	NM_001013954.1		300866	62078636	NM_001013954.1	Lca5	NP_001013976.1	ILMN_1351185	0006110092	S	3015	GAGAATGCCACCCAGGCAGCAGTGTGGAGATCCCCTGAATACCAGGGCTA	8	-	88464812-88464861	8q31	Rattus norvegicus Leber congenital amaurosis 5 (human) (Lca5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62658332-S	ILMN_65523	LOC363861	XM_344069.2	XM_344069.2		363861	62658332	XM_344069.2	LOC363861	XP_344070.2	ILMN_1353280	0000060020	S	21	ACCACACACAACCAGTCCCGCAAATGGGTCGACCCCAAGTTCCTGAGGAA				12p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC363861), mRNA.					
Rattus norvegicus	RefSeq	GI_62667408-S	ILMN_60942	RGD1561055_PREDICTED	XM_577041.2	XM_577041.2		501644	109511223	XM_577041.2	RGD1561055_predicted	XP_577041.1	ILMN_1365578	0006180239	S	739	AGCACCTCACTCTGAAGCACTACTAGGCCTCTGTGCCTTCCAAGGGGCTC	X	-	139087870-139087894:139087895-139087919	Xq36	PREDICTED: Rattus norvegicus similar to Ferritin light chain 2 (Ferritin L subunit 2) (Ferritin subunit LG) (predicted) (RGD1561055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644807	ILMN_49835	LOC311827	XM_231125.3	XM_231125.3		311827	62644807	XM_231125.3	LOC311827	XP_231125.3	ILMN_1650014	0006450324	S	3152	CGTGACTTGGAGCACAACTGACAGGAAGGGACTTCTCAGATGGAGCCACC				3p12	PREDICTED: Rattus norvegicus similar to KIAA0605 gene product (predicted) (LOC311827), mRNA.					
Rattus norvegicus	RefSeq	GI_6981279-S	ILMN_299250	NPR1	NM_012613.1	NM_012613.1		24603	6981279	NM_012613.1	Npr1	NP_036745.1	ILMN_1360992	0002030072	S	3691	GAGGATGGAGATGGTGGGGACTGCAGGGGACACCTAAGTTTGTAGGACTG	2	-	182725243-182725292	2q34	Rattus norvegicus natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) (Npr1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IMP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP [goid 30828] [evidence IMP]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence IMP]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA];  [goid 16941] [evidence IDA];  [goid 16941] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IMP]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence ISS]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA]	NPR-A; Gca; Npra; Anpra	NPR-A; Gca; Npra; Anpra
Rattus norvegicus	RefSeq	GI_47577358-S	ILMN_272970	OLR428	NM_001000394.1	NM_001000394.1		296689	47577358	NM_001000394.1	Olr428	NP_001000394.1	ILMN_1368094	0004560500	S	310	TTCTTCATGGCCTTGGGGAACACTGATAGCTACCTGCTAGCCTCCATGGC	3	+	16740071-16740120	3q11	Rattus norvegicus olfactory receptor 428 (Olr428), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr428	Olr428
Rattus norvegicus	RefSeq	GI_38454293-S	ILMN_277955	RGD735140	NM_198779.1	NM_198779.1		362219	38454293	NM_198779.1	RGD735140	NP_942074.1	ILMN_1373493	0003850538	S	2621	GTATAAACCTCAGACTGCTGCCATTTCCCACCTGACCCAAACCAGCCTGC	3	-	120301925-120301974	3q36	Rattus norvegicus hypothetical protein LK44 (RGD735140), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 6071] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]	Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate [goid 8889] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]	Prei4	Prei4
Rattus norvegicus	RefSeq	GI_62647615-A	ILMN_266804	PCGF1	NM_001007000.1	NM_001007000.1		312480	55741428	NM_001007000.1	Pcgf1	NP_001007001.1	ILMN_1376981	0003120136	S	532	TGTTCTGTTAGAGCTGAGGTCCGCCATCTCCGAAGGGTTCTGTGTCACCG	4	+	117292071-117292120	4q34	Rattus norvegicus polycomb group ring finger 1 (Pcgf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nspc1	Nspc1
Rattus norvegicus	RefSeq	GI_62655246-S	ILMN_52122	LOC363257	XM_343597.2	XM_343597.2		363257	62655246	XM_343597.2	LOC363257	XP_343598.2	ILMN_1362161	0002850435	S	1313	GGGTGACGACTGATACACACCAAGCAGGTGCCCTCGGACCATTTGGAAGG					PREDICTED: Rattus norvegicus similar to mKIAA0657 protein (LOC363257), mRNA.					
Rattus norvegicus	RefSeq	GI_62665395-S	ILMN_69543	LOC498962	XM_574249.1	XM_574249.1		498962	62665395	XM_574249.1	LOC498962	XP_574249.1	ILMN_1363163	0002470059	S	2079	TGCAGCCAACCTCACCTGGAGCCCCCCTTCCAAATCGGTGTGACAGGTAA				19q12	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC197322 (LOC498962), mRNA.					
Rattus norvegicus	RefSeq	GI_62656149-S	ILMN_51003	WNT9A_PREDICTED	XM_220556.4	XM_220556.4		287357	109488202	XM_220556.4	Wnt9a_predicted	XP_220556.3	ILMN_1351669	0006660577	S	1301	AGACCTCTCTCAAGGTGGGCAGCACTACCAATGAAGCCACCGGCGAGGCG	10	+	45638989-45639038	10q22	PREDICTED: Rattus norvegicus wingless related MMTV integration site 9A (predicted) (Wnt9a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576460-S	ILMN_279771	OLR1598	NM_001000910.1	NM_001000910.1		405221	47576460	NM_001000910.1	Olr1598	NP_001000910.1	ILMN_1371989	0006760161	S	104	TGTTCACCCTTGCAGGAAACCTAGTCATCATGGGTTTGACTTGGGTGGAC	13	+	90046885-90046934	13q24	Rattus norvegicus olfactory receptor 1598 (Olr1598), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1598	Olr1598
Rattus norvegicus	RefSeq	GI_62663801-S	ILMN_280379	ANKRD16	NM_001033698.1	NM_001033698.1		307102	76096339	NM_001033698.1	Ankrd16	NP_001028870.1	ILMN_1360245	0002230102	S	1098	GCCTTGGCCCAGCAACTCACGAGGGGCGTGGCTATCCTTCAGGACTTTGA	17	-	77932693-77932742	17q12.3	Rattus norvegicus ankyrin repeat domain 16 (Ankrd16), mRNA.				MGC124844	MGC124844
Rattus norvegicus	RefSeq	GI_47577804-S	ILMN_270202	OLR122	NM_001000156.1	NM_001000156.1		293258	47577804	NM_001000156.1	Olr122	NP_001000156.1	ILMN_1350715	0003990152	S	509	GACTCTACTGGACCACTGTTGTGTCGCACTCATACTGTGAGCACATGGCC	1	+	161468805-161468854	1q32	Rattus norvegicus olfactory receptor 122 (Olr122), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr122	Olr122
Rattus norvegicus	RefSeq	GI_13928769-S	ILMN_273397	CLCN7	NM_031568.1	NM_031568.1		29233	13928769	NM_031568.1	Clcn7	NP_113756.1	ILMN_1365342	0006590114	S	2405	GGTGACCAGGAAGGACCTAGCAAGATACCGCCTAGGAAAAGGAGGCCTAG	10	+	14403554-14403603	10q12	Rattus norvegicus chloride channel 7 (Clcn7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	ClC-7	ClC-7
Rattus norvegicus	RefSeq	GI_16758121-S	ILMN_57735	KLF5	NM_053394.2	NM_053394.2		84410	77157784	NM_053394.2	Klf5	NP_445846.2	ILMN_1361302	0006290711	S	1655	CTCGACGCCTCGCAGTCCGCTCGCCATCCTTTAAACCGCAGACCTAACTT	15	+	83116786-83116835	15q21	Rattus norvegicus Kruppel-like factor 5 (Klf5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEP]; Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell [goid 30033] [evidence IEA]; Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell [goid 30033] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	IKLF; Bteb2	IKLF; Bteb2
Rattus norvegicus	RefSeq	GI_47576830-S	ILMN_299248	OLR202	NM_001000550.1	NM_001000550.1		365337	47576830	NM_001000550.1	Olr202	NP_001000550.1	ILMN_1352877	0002640079	S	904	CGGGAGGGTGTGGTCCACTGGTTCTTGGACATTAAGACTCAGTGTTGTTC	1	-	163080536-163080585	1q33	Rattus norvegicus olfactory receptor 202 (Olr202), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr202	Olr202
Rattus norvegicus	RefSeq	GI_27673504-S	ILMN_69272	RGD1561360_PREDICTED	XM_220630.2	XM_220630.2		303270	109488558	XM_220630.2	RGD1561360_predicted	XP_220630.1	ILMN_1359553	0001450707	S	29	AAATTCCGGGGCCACAACACGGCCACGGTTGCATCCGTAAGCACGGAAAG	10	-	63708343-63708392	10q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (predicted) (RGD1561360_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560039-S	ILMN_291661	PTGDRL	NM_022241.1	NM_022241.1		63889	11560039	NM_022241.1	Ptgdrl	NP_071577.1	ILMN_1356779	0006180041	S	1266	AAAGAGCATTTACTTTTCTTCCAGAAGACCGGAGTTCATTTCCCAGCACC	15	+	19352880-19352929	15p14	Rattus norvegicus prostaglandin D receptor-like (Ptgdrl), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a prostaglandin (PG) to initiate a change in cell activity [goid 4955] [evidence TAS]; Combining with prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 4956] [evidence IEA]; Combining with a thromboxane (TXA) to initiate a change in cell activity [goid 4960] [evidence IEA]	Ptgdr2	Ptgdr2
Rattus norvegicus	RefSeq	GI_54262161-S	ILMN_268617	JTB	NM_019213.2	NM_019213.2		29439	54262161	NM_019213.2	Jtb	NP_062086.1	ILMN_1367882	0003120072	S	614	GGGGGTAGCTTTAGTCTTCGCTTGCCTTGTCATCATTCGTCAGCGACAGC	2	+	182475873-182475922	2q34	Rattus norvegicus jumping translocation breakpoint (Jtb), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]			MGC72461	MGC72461
Rattus norvegicus	RefSeq	GI_62661330-S	ILMN_283866	RGD1559895_PREDICTED	XM_001053790.1	XM_001053790.1		305845	109518383	XM_001053790.1	RGD1559895_predicted	XP_001053790.1	ILMN_1356980	0005890739	S	1319	TATCGCTGTGCCCGCGTCAGCTCCTGGGGAGACCTTTTACCTGTGATCTC				15p14	PREDICTED: Rattus norvegicus similar to FLJ20859 protein (predicted) (RGD1559895_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664996-S	ILMN_286888	TNPO2_PREDICTED	XM_001070750.1	XM_001070750.1		304670	109508593	XM_001070750.1	Tnpo2_predicted	XP_001070750.1	ILMN_1358339	0003190086	S	3038	GAGTTCTCTGGGCTCTAATCTGGGTCATCTCGGGCAGCTCACTTGGGCCA				19q11	PREDICTED: Rattus norvegicus transportin 2 (importin 3, karyopherin beta 2b) (predicted) (Tnpo2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658400-S	ILMN_47758	LOC501803	XM_577211.1	XM_577211.1		501803	62658400	XM_577211.1	LOC501803	XP_577211.1	ILMN_1358970	0005670368	S	2796	CGGAACGTGTCAGAGCGAAGTGGTTCAGTGCTGGCGGTGCTCTATGCTTC					PREDICTED: Rattus norvegicus similar to beta 3-glycosyltransferase-like (LOC501803), mRNA.					
Rattus norvegicus	RefSeq	GI_62663498-S	ILMN_264186	RGD1561310_PREDICTED	XM_001068169.1	XM_001068169.1		498744	109505725	XM_001068169.1	RGD1561310_predicted	XP_001068169.1	ILMN_1374010	0001770301	S	44	GGTCATCCTTTGGAAAGCATCGAAATATGACGCACACGCTGTGCCGCCGC				17p12	PREDICTED: Rattus norvegicus similar to ribosomal protein L37 (predicted) (RGD1561310_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655295-S	ILMN_55382	RGD1560766_PREDICTED	XM_576601.2	XM_576601.2		501174	109486296	XM_576601.2	RGD1560766_predicted	XP_576601.2	ILMN_1351973	0003870037	S	467	CACTGAAAAAGGAGCCCATACCAGCAGTCATCTTCCATGAGCCGGAAGCC	9	-	83522806-83522855	9q34	PREDICTED: Rattus norvegicus similar to putative protein product of HMFN2073 (predicted) (RGD1560766_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018297-S	ILMN_271568	MPEG1	NM_022617.1	NM_022617.1		64552	12018297	NM_022617.1	Mpeg1	NP_072139.1	ILMN_1360256	0000840066	S	2046	TGGGACGGTAATGGAATGTCAGGAGGGGAAGCTGCTGGAGTCACGTTGGG	1	+	215389957-215390006	1q43	Rattus norvegicus macrophage expressed gene 1 (Mpeg1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62663508-S	ILMN_265596	PRLPB	XM_001069642.1	XM_001069642.1		24657	109505741	XM_001069642.1	Prlpb	XP_001069642.1	ILMN_1363478	0001410092	S	841	CCCTATGTGGAATGAACTGGCATACTTGCGGTCACCTGATGAAGAACGTC				17p11	PREDICTED: Rattus norvegicus prolactin-like protein B (Prlpb), mRNA.					
Rattus norvegicus	RefSeq	GI_12018327-S	ILMN_295997	GALP	NM_022633.1	NM_022633.1		64568	12018327	NM_022633.1	Galp	NP_072155.1	ILMN_1367697	0003710746	S	398	TGTCAAGCCGAGGACTGGAGATCTGCGCATAGTGGACAAGAATGTTCCGG	1	-	66117924-66117954:66119952-66119970	1q12	Rattus norvegicus galanin-like peptide (Galp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644455-S	ILMN_277139	LOC499716	XM_001078145.1	XM_001078145.1		499716	109467702	XM_001078145.1	LOC499716	XP_001078145.1	ILMN_1364085	0002970301	S	1472	GATTCCTTCCGAGGTCTGGAGAGGATTATCACACCTGTAGCAATTGCCAG				2q44	PREDICTED: Rattus norvegicus similar to DnaJ (Hsp40) homolog, subfamily B, member 14 isoform 1 (LOC499716), mRNA.					
Rattus norvegicus	RefSeq	GI_47577626-S	ILMN_299878	OLR541	NM_001000565.1	NM_001000565.1		366104	47577626	NM_001000565.1	Olr541	NP_001000565.1	ILMN_1352899	0005690333	S	683	TCCGTTCAACTGAGGGGAGGCTCAAAGCTTTCTCCACTTGTGCCTCACAC	3	-	70512357-70512406	3q24	Rattus norvegicus olfactory receptor 541 (Olr541), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr541	Olr541
Rattus norvegicus	RefSeq	GI_41152511-S	ILMN_292813	IGFBP6	NM_013104.2	NM_013104.2		25641	41152511	NM_013104.2	Igfbp6	NP_037236.1	ILMN_1358541	0000510040	S	537	CTCAGAGGTTTCTACCGCAAGCAGCAGTGTCGTTCCTCGCAGGGGAATCG	7	+	140888460-140888483:140889720-140889745	7q36	Rattus norvegicus insulin-like growth factor binding protein 6 (Igfbp6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with insulin-like growth factor II [goid 31995] [evidence TAS]	RBP6A; IGF-BP6	RBP6A; IGF-BP6
Rattus norvegicus	RefSeq	GI_13928937-S	ILMN_291121	TAGLN3	NM_001035236.1	NM_001035236.1		63837	78214332	NM_001035236.1	Tagln3	NP_001030313.1	ILMN_1361565	0004280750	S	749	TGTTGTATAGTGAGTGCCCCCTGGTAGAGAGGACGGATGTTCCGCACCAC	11	+	56600538-56600587	11q21	Rattus norvegicus transgelin 3 (Tagln3), transcript variant 1, mRNA.		The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]		Np22; Np25	Np22; Np25
Rattus norvegicus	RefSeq	GI_62665928-S	ILMN_264667	RGD1566373_PREDICTED	XM_001080446.1	XM_001080446.1		365560	109510027	XM_001080446.1	RGD1566373_predicted	XP_001080446.1	ILMN_1370639	0002470369	S	128	CTGCCCAGGGAAAGCGGCGTTATGACAGAAAACAGAGTGTCTATGGCGGA				20p11	PREDICTED: Rattus norvegicus similar to large subunit ribosomal protein L36a (predicted) (RGD1566373_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20806130-S	ILMN_281847	PHRF1	NM_139093.1	NM_139093.1		245925	20806130	NM_139093.1	Phrf1	NP_620793.1	ILMN_1371610	0005420253	S	4972	GCGCAAGCACAAGAAGACTGAAGCTGGAGAGGAGCCACCCACTCAAGGTG	1	+	201455953-201456002	1q41	Rattus norvegicus PHD and ring finger domains 1 (Phrf1), mRNA.					
Rattus norvegicus	RefSeq	GI_47577450-S	ILMN_287308	OLR469	NM_001000299.1	NM_001000299.1		295739	47577450	NM_001000299.1	Olr469	NP_001000299.1	ILMN_1372796	0006100026	S	408	GTCTCGAGGTGTCTGTCTTTCTCTTGTGATGACGCAGTACATTTACGGCT	3	+	69171254-69171303	3q24	Rattus norvegicus olfactory receptor 469 (Olr469), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-69067219-69068142_ORF; Olr469	ratchr3-69067219-69068142_ORF; Olr469
Rattus norvegicus	RefSeq	GI_25742842-S	ILMN_274624	CCL4	NM_053858.1	NM_053858.1		116637	25742842	NM_053858.1	Ccl4	NP_446310.1	ILMN_1356351	0004920066	S	194	TTCTGACCAAAAAAGGCAGGCAAATCTGTGCCGACCCCAGCGAGCCCTGG	10	+	71761030-71761079	10q26	Rattus norvegicus chemokine (C-C motif) ligand 4 (Ccl4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that modulates the extent to which blood vessels can be pervaded by fluid [goid 43114] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IDA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scya4; Mip1-b	Scya4; Mip1-b
Rattus norvegicus	RefSeq	GI_47577972-S	ILMN_301155	OLR1105	NM_001001078.1	NM_001001078.1		405968	47577972	NM_001001078.1	Olr1105	NP_001001078.1	ILMN_1372629	0005700154	S	437	CCTGGGGTCTGGCCATTGTGGATGCTCTCCTCAACATACTTCTGGCTGTC	7	-	137077321-137077370	7q36	Rattus norvegicus olfactory receptor 1105 (Olr1105), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1105	Olr1105
Rattus norvegicus	RefSeq	GI_41386752-S	ILMN_66540	TCFAP2C	NM_201420.2	NM_201420.2		362280	78185890	NM_201420.2	Tcfap2c	NP_958823.2	ILMN_1357191	0002350605	S	1556	GCACCGGAAGTAAAGTGGGATCGAGGAGGCCAGAAAGCGGAAGGAGAGAG	3	+	163466937-163466949:163466950-163466986	3q42	Rattus norvegicus transcription factor AP-2, gamma (Tcfap2c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]	Tfap2c; AP2-gamma	Tfap2c; AP2-gamma
Rattus norvegicus	RefSeq	GI_62641792-S	ILMN_280523	MAP4K2_PREDICTED	XM_001071701.1	XM_001071701.1		293694	109463415	XM_001071701.1	Map4k2_predicted	XP_001071701.1	ILMN_1358619	0002120373	S	2812	GCTGGTTGGTCTTATCCCACTAGTCCCTCTGAGGTGAAGGAGTTGAACCC				1q43	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase kinase kinase 2 (predicted) (Map4k2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649649-S	ILMN_268936	RGD1563072_PREDICTED	XM_001058394.1	XM_001058394.1		313595	109477248	XM_001058394.1	RGD1563072_predicted	XP_001058394.1	ILMN_1367711	0001990278	S	965	AACGTGCAGGCTTGTGTTGGGGTGTGAGTGACCCTCTGTGTGTTGAGATT				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38984 (predicted) (RGD1563072_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644480-S	ILMN_289379	BMPR1B	NM_001024259.1	NM_001024259.1		310914	66730385	NM_001024259.1	Bmpr1b	NP_001019430.1	ILMN_1353145	0002850114	S	1305	GAGCAAGCTGGACAGACACAGAGGAACCCAGAAACACGGATTCACCATGG	2	-	239727714-239727763	2q44	Rattus norvegicus bone morphogenetic protein receptor, type IB (Bmpr1b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEA]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; Increase in size of the cumulus surrounding the oocyte including change in morphology due to proliferation and dispersion of cumulus cells [goid 1550] [evidence IEA]; Increase in size of the cumulus surrounding the oocyte including change in morphology due to proliferation and dispersion of cumulus cells [goid 1550] [evidence ISS]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence IEA]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence ISS]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEA]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ];  [goid 4702] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I TGF-beta receptor [goid 5025] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I TGF-beta receptor [goid 5025] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]	CFK-43a; Bmpr1b	CFK-43a; Bmpr1b
Rattus norvegicus	RefSeq	GI_62663677-S	ILMN_62439	LOC498766	XM_574052.1	XM_574052.1		498766	62663677	XM_574052.1	LOC498766	XP_574052.1	ILMN_1367227	0003990279	S	365	CTGGAGCAAAACTGAAGAGTGGAAAGGGTGAGCATGAGTGTGCCCCAATG				17q12.1	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC498766), mRNA.					
Rattus norvegicus	RefSeq	GI_62664618-S	ILMN_50933	ELAC1_PREDICTED	XM_226184.4	XM_226184.4		307604	109506777	XM_226184.4	Elac1_predicted	XP_226184.3	ILMN_1356034	0006350373	S	1069	AGCCAGAGAAGGGGAGGCAGACGGCATCACGGAACTGAAAAAGCAAGCCG	18	-	70514457-70514506	18q12.2	PREDICTED: Rattus norvegicus elaC homolog 1 (E. coli) (predicted) (Elac1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652120-I	ILMN_52977	CNOT2_PREDICTED	XM_576225.1	XM_576225.1		299805	62652120	XM_576225.1	Cnot2_predicted	XP_576225.1	ILMN_1376031	0006040504	S	2532	TTGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCC				7q22	PREDICTED: Rattus norvegicus CCR4-NOT transcription complex, subunit 2 (predicted) (Cnot2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647668-S	ILMN_266441	MRPL53_PREDICTED	XM_001072540.1	XM_001072540.1		362388	109473774	XM_001072540.1	Mrpl53_predicted	XP_001072540.1	ILMN_1363742	0007040288	S	527	GAAATGTTAAGTGCCTTGGCCTCCCACATTCGGGCTAGGAACGCTGCCGC				4q34	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L53 (predicted) (Mrpl53_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639110-S	ILMN_267336	CLPTM1_PREDICTED	XM_001067335.1	XM_001067335.1		292696	109461330	XM_001067335.1	Clptm1_predicted	XP_001067335.1	ILMN_1351636	0005340154	S	2276	ACCATCGGGAATCATGGTGAAGCCAATATGGCGCCGAGGGTGGGCCAGGC				1q21	PREDICTED: Rattus norvegicus cleft lip and palate associated transmembrane protein 1 (predicted) (Clptm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645887-S	ILMN_57575	LOC314570	XM_234810.3	XM_234810.3		314570	62645887	XM_234810.3	LOC314570	XP_234810.3	ILMN_1361520	0004570458	S	20	CACTTCCTCATCTCAGACCTACAAAGGGATGCCCCAGGAATTAACCGGGG					PREDICTED: Rattus norvegicus similar to LRRGT00083 (LOC314570), mRNA.					
Rattus norvegicus	RefSeq	GI_62639346-S	ILMN_264217	CKAP1_PREDICTED	XM_001071286.1	XM_001071286.1		292777	109458544	XM_001071286.1	Ckap1_predicted	XP_001071286.1	ILMN_1366118	0000610280	S	1130	CTTCGCAGGGGCACTGTCATGTATGTAGGACTCACAGATTTCAAGCCAGG	1	+	85494895-85494922:85495973-85495994	1q21	PREDICTED: Rattus norvegicus cytoskeleton-associated protein 1 (predicted) (Ckap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758637-S	ILMN_274785	CRNKL1	NM_053797.1	NM_053797.1		116481	16758637	NM_053797.1	Crnkl1	NP_446249.1	ILMN_1363242	0002810047	S	1954	GGTCCAGGCTGACGATGGGTCTGATGCCGGATGGGAAGAGTACTATGACT	3	-	134539247-134539278:134540398-134540415	3q41	Rattus norvegicus crooked neck pre-mRNA splicing factor-like 1 (Drosophila) (Crnkl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]	The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence ISS]; The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC93283; Crn	MGC93283; Crn
Rattus norvegicus	RefSeq	GI_33414524-S	ILMN_61049	CD276	NM_182824.2	NM_182824.2		315716	71896575	NM_182824.2	Cd276	NP_877976.1	ILMN_1360321	0000730114	S	2539	GGGGTGGAAACCTGGAGAAGGCACAGCCCCTTACCATACCTTGAGAACTG	8	-	62331461-62331510	8q24	Rattus norvegicus Cd276 molecule (Cd276), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45077] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45077] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45078] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45085] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45085] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IEA]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]	B7h3; B7RP-2	B7h3; B7RP-2
Rattus norvegicus	RefSeq	GI_13591913-S	ILMN_269103	ANPEP	NM_031012.1	NM_031012.1		81641	13591913	NM_031012.1	Anpep	NP_112274.1	ILMN_1365396	0000610634	S	2959	ATGACTATCTCAGCAGCCTGTGCAGGGTCTCTGTCTTCAGAGCGCCAGAC	1	-	135601063-135601112	1q31	Rattus norvegicus alanyl (membrane) aminopeptidase (Anpep), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The volume enclosed by the membrane or protein that forms a vesicle [goid 31983] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	APN; Lap1; Apm	APN; Lap1; Apm
Rattus norvegicus	RefSeq	GI_13540655-S	ILMN_283271	EMP3	NM_030847.1	NM_030847.1		81505	13540655	NM_030847.1	Emp3	NP_110474.1	ILMN_1366346	0006400484	S	644	CCCTGGTCAGTGGCATCATCTACATCCACCTGCGGAAACGAGAATGAGCG	1	-	96389818-96389820:96389821-96389867	1q22	Rattus norvegicus epithelial membrane protein 3 (Emp3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEA]		MGC108667	MGC108667
Rattus norvegicus	RefSeq	GI_62654186	ILMN_67419	MSL2L1_PREDICTED	XM_236567.4	XM_236567.4		315959	109483869	XM_236567.4	Msl2l1_predicted	XP_236567.4	ILMN_1650440	0003710035	S	2865	GCTACAGTCTTACGGCAGCTATGGTTCTGTTGGTTTAACTTGCCGGAGCT	8	+	106057163-106057212	8q31	PREDICTED: Rattus norvegicus male-specific lethal 2-like 1 (Drosophila) (predicted) (Msl2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667309-S	ILMN_55500	IL1RAPL2_PREDICTED	XM_236512.4	XM_236512.4		300913	109511130	XM_236512.4	Il1rapl2_predicted	XP_236512.4	ILMN_1351800	0003390195	S	2800	CCAGCCAACACCCTGTCAGTACCCTCCTTAGGCAACCACCACACTTACTG	X	+	126352324-126352373	Xq35	PREDICTED: Rattus norvegicus interleukin 1 receptor accessory protein-like 2 (predicted) (Il1rapl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639017-S	ILMN_298384	RGD1561122_PREDICTED	XR_008826.1	XR_008826.1		502297	109461223	XR_008826.1	RGD1561122_predicted		ILMN_1350046	0002690021	S	1890	ATCACAAACCCAGGAAGAAGGCTGAGAAACTTCCTCATATCGGGGACACC				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor Go-VN13C (predicted) (RGD1561122_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_26080405-S	ILMN_295149	PPP1R14C	NM_133425.2	NM_133425.2		171010	26080405	NM_133425.2	Ppp1r14c	NP_596916.1	ILMN_1374470	0002450746	S	2143	CCTGATGCTTATCTCGGTGTCTTCAGCAGAGAACCCAGTCATGTTCTTGG	1	+	34118002-34118051	1p11	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14c (Ppp1r14c), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]	 [goid 4865] [evidence IDA];  [goid 4865] [evidence ISS];  [goid 4865] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Kepi; MGC93087	Kepi; MGC93087
Rattus norvegicus	RefSeq	GI_62652547-S	ILMN_51640	LOC361163	XM_341449.2	XM_341449.2		361163	62652547	XM_341449.2	LOC361163	XP_341450.2	ILMN_1366033	0005890086	S	338	ATTAAAAATGGGGTTCACGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCT					PREDICTED: Rattus norvegicus similar to LRRGT00078 (LOC361163), mRNA.					
Rattus norvegicus	RefSeq	GI_62654996-S	ILMN_67339	RGD1559649_PREDICTED	XM_578787.2	XM_578787.2		503253	109485976	XM_578787.2	RGD1559649_predicted	XP_578787.2	ILMN_1352054	0001230484	S	983	CTCCTGCAGACATAGAAGGCGACTTAGTGGATGACATCATTGCCCGTGCC	9	-	36855319-36855368	9q21	PREDICTED: Rattus norvegicus similar to lysozyme-like (predicted) (RGD1559649_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865409-A	ILMN_266290	REC8	NM_001011916.1	NM_001011916.1		290227	58865409	NM_001011916.1	Rec8	NP_001011916.1	ILMN_1376718	0005860041	S	1952	CATATGGGCGCCTCCTGATTCGTCTAGGACCCAAATTCCCCTGAGCAAGT	15	+	33761164-33761208:33761209-33761213	15p13	Rattus norvegicus REC8 homolog (yeast) (Rec8), mRNA.	A chromosome found in the nucleus of a eukaryotic cell [goid 228] [evidence IEA]; The region of a condensed chromosome in the nucleus that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 780] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence ISS]; A proteinaceous core found between sister chromatids during meiotic prophase [goid 800] [evidence ISS]; A proteinaceous core found between sister chromatids during meiotic prophase [goid 800] [evidence IEA]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A cohesin complex that mediates sister chromatid cohesion during meiosis; has a subunit composition distinct from that of the mitotic cohesin complex [goid 30893] [evidence ISS]	A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence ISS]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; The cell cycle process whereby the side by side pairing and physical juxtaposition of homologous chromosomes is created at the metaphase plate [goid 7129] [evidence ISS]; Progression through male meiosis I, the first meiotic division in the male germline [goid 7141] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Rec8	Rec8
Rattus norvegicus	RefSeq	GI_16923975-A	ILMN_267986	PEX6	NM_057125.1	NM_057125.1		117265	16923975	NM_057125.1	Pex6	NP_476466.1	ILMN_1376911	0004780546	S	3033	AGGAGATACCCTGAGATCCCTAGTGGGAGGCCCTTGTGCCCAGGAGAAGA				9q12	Rattus norvegicus peroxisomal biogenesis factor 6 (Pex6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; The process by which proteins are moved across the peroxisomal membrane into the matrix. It is likely that the peroxisome targeting sequence receptor remains associated with cargo proteins during translocation [goid 16561] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive some other reaction, for example ion transport across a membrane [goid 42623] [evidence ISS]	Paf-2; Paf2	Paf-2; Paf2
Rattus norvegicus	RefSeq	GI_62666834-S	ILMN_51486	LOC503436	XM_578982.1	XM_578982.1		503436	62666834	XM_578982.1	LOC503436	XP_578982.1	ILMN_1353716	0005290731	S	335	CTGCTGCCGCTCAGGAGAAGATCTGATGACAGGAATCGTCATTGCAGGCC					PREDICTED: Rattus norvegicus similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) (LOC503436), mRNA.					
Rattus norvegicus	RefSeq	GI_62655045-S	ILMN_52893	LOC301445	XM_217414.3	XM_217414.3		301445	62655045	XM_217414.3	LOC301445	XP_217414.3	ILMN_1371432	0002680097	S	552	TGCTGCAGAGAGCATGCCGGGAGTGTGGAGACACCCTTGGTGACCCTCTC					PREDICTED: Rattus norvegicus similar to WD repeat domain 12 (LOC301445), mRNA.					
Rattus norvegicus	RefSeq	GI_24475697-S	ILMN_60488	MCAM	NM_023983.3	NM_023983.3		78967	77176451	NM_023983.3	Mcam	NP_076473.2	ILMN_1357064	0006200301	S	1773	CAAGAAGGGCAAACTGCCTTGTGGACGCTCAGGAAAACAGGAGATCACGC	8	+	47126504-47126553	8q22	Rattus norvegicus melanoma cell adhesion molecule (Mcam), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Muc18	Muc18
Rattus norvegicus	RefSeq	GI_62660249-S	ILMN_265919	RGD1561977_PREDICTED	XM_001078624.1	XM_001078624.1		501903	109515942	XM_001078624.1	RGD1561977_predicted	XP_001078624.1	ILMN_1364073	0005050739	S	1316	GTTCTGAGCTCATGGATACACTCAGGGCAATACGGCAGCCCAAGAACATC				14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1561977_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660918	ILMN_62431	LOC501934	XM_577360.1	XM_577360.1		501934	62660918	XM_577360.1	LOC501934	XP_577360.1	ILMN_1650266	0002470673	S	94	TCCTATAAACCTTTAACTAGCTTCGAGGGCTCAAGTCCGGTGTCCAGCGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310036O22 (LOC501934), mRNA.					
Rattus norvegicus	RefSeq	GI_62652188-S	ILMN_56764	LOC497820	XM_579408.1	XM_579408.1		497820	62652188	XM_579408.1	LOC497820	XP_579408.1	ILMN_1357706	0001500008	S	2351	AACCAAACAGAACTAACTAGTTTTCACCATCAATCTGCCACATTTGTGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017302 (LOC497820), mRNA.					
Rattus norvegicus	RefSeq	GI_62648862-S	ILMN_67581	CCNC	XM_342812.3	XM_342812.3		114839	109474761	XM_342812.3	Ccnc	XP_342813.3	ILMN_1371396	0006760546	S	652	CGTGTTGCTTCCCCTTGCATGGAGGATAGTGAATGACACCTACAGGACGG	5	+	36475941-36475961:36476302-36476330	5q21	PREDICTED: Rattus norvegicus cyclin C (Ccnc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576960-S	ILMN_263814	OLR259	NM_001000222.1	NM_001000222.1		293402	47576960	NM_001000222.1	Olr259	NP_001000222.1	ILMN_1370834	0006130411	S	683	TCAAGATGCGCTCCACTGAGGGTCGCCAGAAAGCTTTCTCAACCTGCACC	1	-	165771311-165771360	1q33	Rattus norvegicus olfactory receptor 259 (Olr259), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr259; ratchr1-165882706-165881765_ORF	Olr259; ratchr1-165882706-165881765_ORF
Rattus norvegicus	RefSeq	GI_9506912-S	ILMN_277797	NDUFS6	NM_019223.1	NM_019223.1		29478	9506912	NM_019223.1	Ndufs6	NP_062096.1	ILMN_1354793	0005270408	S	93	CACGCATACCGGCCAGGTGTCTGATGGAAAAGACTACAGGGGGATTCGTT	2	+	26295802-26295817:26295881-26295914	2q12	Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 6 (Ndufs6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	RATIp13dis; Ndub13; Ip13dis	RATIp13dis; Ndub13; Ip13dis
Rattus norvegicus	RefSeq	GI_62654509-S	ILMN_60625	LOC501076	XM_576488.1	XM_576488.1		501076	62654509	XM_576488.1	LOC501076	XP_576488.1	ILMN_1349750	0004010687	S	718	TGCAGCCCTTCTCGTTCAGGAATCTGGGTTGCAAGCTGGCGTGGGAACCA					PREDICTED: Rattus norvegicus similar to Vasoactive intestinal polypeptide receptor 1 precursor (VIP-R-1) (Pituitary adenylate cyclase activating polypeptide type II receptor) (PACAP type II receptor) (PACAP-R-2) (LOC501076), mRNA.					
Rattus norvegicus	RefSeq	GI_11120687-S	ILMN_297523	CD14	NM_021744.1	NM_021744.1		60350	11120687	NM_021744.1	Cd14	NP_068512.1	ILMN_1352209	0001850039	S	1116	CTTTCACCCGGATCAGCGGGCTTGTCAGGAACTTTGGCTTTGCTCCTAGG	18	-	29374934-29374983	18p11	Rattus norvegicus CD14 molecule (Cd14), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated [goid 46696] [evidence IEP]; A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated [goid 46696] [evidence TAS]	A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEP]			
Rattus norvegicus	RefSeq	GI_27229305-S	ILMN_297338	ZP4	NM_172330.1	NM_172330.1		282833	27229305	NM_172330.1	Zp4	NP_758833.1	ILMN_1360086	0006860100	S	1489	CTAGCAAAGGTCCCGTGATCCTCCTCCAAGCCACTAAGGACCCTGCAGTC	17	-	69577429-69577478	17q12.1	Rattus norvegicus zona pellucida glycoprotein 4 (Zp4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities [goid 32190] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642657-S	ILMN_54793	LOC309928	XM_226612.3	XM_226612.3		309928	62642657	XM_226612.3	LOC309928	XP_226612.3	ILMN_1361653	0005860128	S	2087	CCTTGGTTAGTCTGTTCCCAGCACCGAGGAGACCAGCATGTTTGGGAAGA				2q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22344 (predicted) (LOC309928), mRNA.					
Rattus norvegicus	RefSeq	GI_62663538-S	ILMN_264023	RGD1561600_PREDICTED	XR_008490.1	XR_008490.1		291105	109505724	XR_008490.1	RGD1561600_predicted		ILMN_1355058	0003710324	S	1708	CCTCTGGCCTCCCCAGCCAACCTTTTACAGCAGACTGAGGACCAAATTCC				17p12	PREDICTED: Rattus norvegicus similar to E2f3 protein (predicted) (RGD1561600_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663496	ILMN_264023	RGD1561600_PREDICTED	XR_008490.1	XR_008490.1		291105	109505724	XR_008490.1	RGD1561600_predicted		ILMN_1650246	0005050537	S	1113	GTCACCTGATGGGGTCCTGGATCTGAACAAAGCAGCAGAGGTGCTCAAGG				17p12	PREDICTED: Rattus norvegicus similar to E2f3 protein (predicted) (RGD1561600_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651963-S	ILMN_68462	LOC299683	XM_234986.3	XM_234986.3		299683	62651963	XM_234986.3	LOC299683	XP_234986.3	ILMN_1367072	0005900056	S	841	CGGGAAACTTCTTTGACCTCAGAATGGAGGAGGGGCTGCTGCAAGAGGAG				7q13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (LOC299683), mRNA.					
Rattus norvegicus	RefSeq	GI_62657507-S	ILMN_69003	FNSK_PREDICTED	XM_573235.2	XM_573235.2		498034	109489522	XM_573235.2	Fnsk_predicted	XP_573235.1	ILMN_1357008	0004480020	S	804	CACTGCCTACCATCAGAAGATCCCAAAGGCTCCAGGGTTCGACAAACGCC	10	+	110674503-110674552	10q32.3	PREDICTED: Rattus norvegicus similar to fructosamine-3-kinase (predicted) (Fnsk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641639-S	ILMN_265168	LOC682990	XM_001063980.1	XM_001063980.1		682990	109463225	XM_001063980.1	LOC682990	XP_001063980.1	ILMN_1367135	0001400022	S	370	TTGTGGCTCCTGTGGGGGCTGTGGCTCCTGTGGGGGTTGCAAGGGAAGCT					PREDICTED: Rattus norvegicus hypothetical protein LOC682990 (LOC682990), mRNA.					
Rattus norvegicus	RefSeq	GI_62644091-S	ILMN_58740	TTF2_PREDICTED	XM_215670.3	XM_215670.3		295324	62644091	XM_215670.3	Ttf2_predicted	XP_215670.2	ILMN_1356764	0006510435	S	3906	GCTTTGGTGTGAGATGGTCTGGGGAGGTGAGTCTGGAAGAACTGTATGTG				2q34	PREDICTED: Rattus norvegicus transcription termination factor, RNA polymerase II (predicted) (Ttf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717976-S	ILMN_58747	LOC503320	XM_578854.1	XM_578854.1		503320	62717976	XM_578854.1	LOC503320	XP_578854.1	ILMN_1364000	0000610332	S	42	ATTCTTCCCACGTCGTGTACCCGGTCATGGTTGGCCGAGCACTTGGAGCA					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC503320), mRNA.					
Rattus norvegicus	RefSeq	GI_62645296-S	ILMN_51913	LOC295671	XM_230018.2	XM_230018.2		295671	62645296	XM_230018.2	LOC295671	XP_230018.1	ILMN_1364912	0005910132	S	1873	TCCCTGCTGTTCTCGAACAACCCTTGGAGGAAGAAAGAATTCACACTGGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930506L13 (predicted) (LOC295671), mRNA.					
Rattus norvegicus	RefSeq	GI_62654225-S	ILMN_262844	PIK3R4_PREDICTED	XM_001070149.1	XM_001070149.1		363131	109485213	XM_001070149.1	Pik3r4_predicted	XP_001070149.1	ILMN_1358726	0002100021	S	4198	CTGGGACTTGGTTTCCCCAGAGAGGTCCTATGTTGTAGCGGGAAGCACGG				8q32	PREDICTED: Rattus norvegicus phosphoinositide-3-kinase, regulatory subunit 4, p150 (predicted) (Pik3r4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393492-S	ILMN_277290	GRN	NM_017113.1	NM_017113.1		29143	8393492	NM_017113.1	Grn	NP_058809.1	ILMN_1357411	0000580286	S	1758	CCAGCCCCAAGACCGCTACTGTGAGGAAGGGCTAACGACTAAAGAACTCC	10	+	91541875-91541898:91541899-91541924	10q32.1	Rattus norvegicus granulin (Grn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The hatching of the cellular blastocyst from the zona pellucida [goid 1835] [evidence IEA]; The hatching of the cellular blastocyst from the zona pellucida [goid 1835] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IEA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643432-S	ILMN_70273	RAB33B_PREDICTED	XM_345208.3	XM_345208.3		365793	109464732	XM_345208.3	Rab33b_predicted	XP_345209.1	ILMN_1360682	0003390170	S	722	GGCCAGCTTCCACAGCCTGCCATCTTGGATAGAGGAATGCAAACAGCATT	2	+	140387239-140387288	2q26	PREDICTED: Rattus norvegicus RAB33B, member of RAS oncogene family (predicted) (Rab33b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164022-S	ILMN_274842	MGC72997	NM_001009537.1	NM_001009537.1		494339	57164022	NM_001009537.1	MGC72997	NP_001009537.1	ILMN_1358107	0001980110	S	2207	GCACTTGAGAGGCAGAGGCAGGGAATCTGAGTTCAGGGCCAACCTCATCT	7	-	13478232-13478281	7q11	Rattus norvegicus similar to 6030490I01Rik (MGC72997), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13591901-S	ILMN_66650	ACTN1	NM_031005.2	NM_031005.2		81634	77404385	NM_031005.2	Actn1	NP_112267.1	ILMN_1366137	0002510020	S	2561	CCTCATCAGCTTGGGTTATGATATTGGCAACGACCCCCAGGGAGAGGCAG	6	-	103190192-103190202:103191856-103191894	6q24	Rattus norvegicus actinin, alpha 1 (Actn1), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]	Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IEA]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence IEA]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence IEA]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656837-S	ILMN_265568	RGD1564031_PREDICTED	XM_001081217.1	XM_001081217.1		501714	109491628	XM_001081217.1	RGD1564031_predicted	XP_001081217.1	ILMN_1351062	0002760142	S	180	TGGTTTCACTAGCCGTGTAGCAAAGGCACAGGACCCAGCCACAGTGGGCC				10q26	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (predicted) (RGD1564031_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646840-S	ILMN_61069	RGD1565889_PREDICTED	XM_342640.3	XM_342640.3		362322	109471727	XM_342640.3	RGD1565889_predicted	XP_342641.2	ILMN_1361584	0000780068	S	2985	AATTTGGGGTGCCATGAATTATGGTCAGAGGCCTGTGTGTCTGTGAAGGG	4	-	30822720-30822769	4q13	PREDICTED: Rattus norvegicus similar to citrin (predicted) (RGD1565889_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981153-S	ILMN_265787	LGALS5	NM_012976.1	NM_012976.1		25475	6981153	NM_012976.1	Lgals5	NP_037108.1	ILMN_1360314	0003850504	S	45	TCAGCACCCAGACTCCATACCCGAACCTAGCTGTACCTTTCTTCACCAGC	10	-	65078433-65078454:65078614-65078641	10q25	Rattus norvegicus lectin, galactose binding, soluble 5 (Lgals5), mRNA.			Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665218-S	ILMN_267603	NFAT5_PREDICTED	XM_001076581.1	XM_001076581.1		307820	109508844	XM_001076581.1	Nfat5_predicted	XP_001076581.1	ILMN_1373056	0002030594	S	4988	CTGCCCCACTGGCCTCCTCGGTGAACAACAGTCAGAACATGGAAAAGATC				19q12	PREDICTED: Rattus norvegicus nuclear factor of activated T-cells 5 (predicted) (Nfat5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576934-S	ILMN_273457	OLR7	NM_001000768.1	NM_001000768.1		405043	47576934	NM_001000768.1	Olr7	NP_001000768.1	ILMN_1372819	0007050347	S	794	CCAGGCCCAGCCATGTCAAATCCACAGACCTCAACAAGGTGCTATCAGTC	1	-	65795690-65795739	1q12	Rattus norvegicus olfactory receptor 7 (Olr7), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr7	Olr7
Rattus norvegicus	RefSeq	GI_62644239-S	ILMN_66020	DBT	XM_342328.3	XM_342328.3		29611	109465422	XM_342328.3	Dbt	XP_342329.3	ILMN_1363663	0004610358	S	724	CGAAATCGGAAATCACACCACCGCCACCACAGCCCAGAGACAGGCCCTTT	2	+	212779209-212779258	2q41	PREDICTED: Rattus norvegicus dihydrolipoamide branched chain transacylase E2 (Dbt), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576870-S	ILMN_290880	OLR218	NM_001000551.1	NM_001000551.1		365340	47576870	NM_001000551.1	Olr218	NP_001000551.1	ILMN_1351991	0005080037	S	757	GGTGCTGCCACCTTCATGTATGTTCTACCCAGTTCACTGCACAGCACCAA	1	-	164114550-164114599	1q33	Rattus norvegicus olfactory receptor 218 (Olr218), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr218	Olr218
Rattus norvegicus	RefSeq	GI_6978834-S	ILMN_294436	MS4A2	NM_012845.1	NM_012845.1		25316	6978834	NM_012845.1	Ms4a2	NP_036977.1	ILMN_1365611	0005910408	S	2166	GCAAACTCTGAAGAAGCATTTCCCAAAGGGTGTGGGCAGAGGACCAGAAC	1	+	214018623-214018672	1q43	Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide) (Ms4a2), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A protein complex composed of an Fc-epsilon RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-episilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgE [goid 32998] [evidence IEA]; A protein complex composed of an Fc-epsilon RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-episilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgE [goid 32998] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IDA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of mast cell degranulation [goid 43306] [evidence IMP]; The regulated release of cytokines from a cell or group of cells. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 50663] [evidence IGI]; Any process that modulates the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51279] [evidence IGI]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an immunoglobulin of the IgE isotype via the Fc region to initiate a change in cell activity [goid 19767] [evidence IDA]; Interacting selectively with an immunoglobulin of the IgE isotype [goid 19863] [evidence IEA]; Interacting selectively with an immunoglobulin of the IgE isotype [goid 19863] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IDA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]	Fcer1b; Ms4a1; FCIGA	Fcer1b; Ms4a1; FCIGA
Rattus norvegicus	RefSeq	GI_16758261-S	ILMN_301399	ABCG1	NM_053502.1	NM_053502.1		85264	16758261	NM_053502.1	Abcg1	NP_445954.1	ILMN_1354046	0004200279	S	3234	GGATCTTGTTTTGACCGGTCCTGAGATTCCTCGGCTGTGGCCTTGACGCT	20	+	9459279-9459328	20p12	Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 1 (Abcg1), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence TAS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence ISS]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]; The directed movement of a glycoprotein, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid, into, out of, within or between cells [goid 34436] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42987] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45542] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45542] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of phospholipid within an organism or cell [goid 55091] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of phospholipids into, out of, within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester [goid 5548] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence ISS]; Enables the directed movement of a toxin into, out of, within or between cells. A toxin is a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 19534] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + sterol(in) = ADP + phosphate + sterol(out) [goid 34041] [evidence ISS]; Enables the directed movement of a glycoprotein, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid, into, out of, within or between cells [goid 34437] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Abc8	Abc8
Rattus norvegicus	RefSeq	GI_47576200-S	ILMN_269563	OLR1344	NM_001000483.1	NM_001000483.1		301610	47576200	NM_001000483.1	Olr1344	NP_001000483.1	ILMN_1362896	0006860551	S	755	ACGTGGCCATGCTTTTTATATATGTGCGACCCCAGGCCATCGATACCCGG	9	-	91704725-91704774	9q36	Rattus norvegicus olfactory receptor 1344 (Olr1344), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1344; ratchr9-91910298-91909363_ORF	Olr1344; ratchr9-91910298-91909363_ORF
Rattus norvegicus	RefSeq	GI_11761542-S	ILMN_285169	BGLAP	NM_013414.1	NM_013414.1		25295	11761542	NM_013414.1	Bglap	NP_038200.1	ILMN_1365188	0005390278	S	306	GCTTCCAGGACGCCTACAAGCGCATCTATGGCACCACCGTTTAGGGCATG	2	-	180482444-180482450:180482451-180482493	2q34	Rattus norvegicus bone gamma-carboxyglutamate (gla) protein (Bglap), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence TAS]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; The action of a molecule that contributes to the structural integrity of bone [goid 8147] [evidence TAS]	Bglap; BGPRA; Bgp; BGPR	Bglap; BGPRA; Bgp; BGPR
Rattus norvegicus	RefSeq	GI_62657630-S	ILMN_59821	OLIG2_PREDICTED	XM_221668.4	XM_221668.4		304103	109492926	XM_221668.4	Olig2_predicted	XP_221668.4	ILMN_1366499	0003120037	S	807	ATGAAGAGACTGGTGAGCGAGATTTACGGGGGTCACCACGCCGGCTTCCA	11	+	31206949-31206998	11q11	PREDICTED: Rattus norvegicus oligodendrocyte transcription factor 2 (predicted) (Olig2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62339301-S	ILMN_275611	LOC680020	XM_001055350.1	XM_001055350.1		680020	109506473	XM_001055350.1	LOC680020	XP_001055350.1	ILMN_1354641	0002370603	S	2013	TCTGCCAGAGGTGGCGCTCAACCCCACAAAGGAAGAAGACATGCTCACAC	18	+	30171780-30171829	18p11	PREDICTED: Rattus norvegicus similar to protocadherin beta 8 (LOC680020), mRNA.					
Rattus norvegicus	RefSeq	GI_62650500-I	ILMN_62862	LPIN1_PREDICTED	XM_576006.1	XM_576006.1		313977	62650500	XM_576006.1	Lpin1_predicted	XP_576006.1	ILMN_1376205	0006380441	S	4193	AGAGTCCTTGCCATTGTAGTCACTGGGCTCTGTTAAGGTCGGATGTGGCC				6q15	PREDICTED: Rattus norvegicus lipin 1 (predicted) (Lpin1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661763-A	ILMN_279587	KBTBD7	NM_001012045.1	NM_001012045.1		306073	58865665	NM_001012045.1	Kbtbd7	NP_001012045.1	ILMN_1376973	0004010088	S	1308	CTGTTCCACTGTTCAGCCCAGGAAAGGTGTATGGGTATATAAGCCAGCCC	15	+	61502883-61502932	15q12	Rattus norvegicus kelch repeat and BTB (POZ) domain containing 7 (Kbtbd7), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648851-S	ILMN_288884	STOML2	NM_001031646.1	NM_001031646.1		298203	72255526	NM_001031646.1	Stoml2	NP_001026816.1	ILMN_1353220	0002810181	S	976	CGGAGCGCAGAACTCCAGCGAGGCCAGAAGAGATGTCCAGACTACAGACA	5	-	59518631-59518680	5q22	Rattus norvegicus stomatin (Epb7.2)-like 2 (Stoml2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			MGC116331	MGC116331
Rattus norvegicus	RefSeq	GI_62660877-S	ILMN_272553	LOC360990	XR_009611.1	XR_009611.1		360990	109501104	XR_009611.1	LOC360990		ILMN_1365542	0004760435	S	10724	AGCTGCTTCTTGACGTTAGATGTGGCAATGTCTGCGCTCACGTGCCCTCC				14q22	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 34 (LOC360990), misc RNA.					
Rattus norvegicus	RefSeq	GI_62660879-S	ILMN_272553	LOC360990	XR_009611.1	XR_009611.1		360990	109501104	XR_009611.1	LOC360990		ILMN_1371121	0004810373	S	11527	GTCTTCCAAGCAGTCACACACTTGGGGACAGAGGGAGGAGACATCTGCAT				14q22	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 34 (LOC360990), misc RNA.					
Rattus norvegicus	RefSeq	GI_62651794-S	ILMN_59899	SYDE1_PREDICTED	XM_343173.3	XM_343173.3		362842	109480291	XM_343173.3	Syde1_predicted	XP_343174.1	ILMN_1358120	0002350020	S	2109	ACGTGACAGGCAGCGACAGTGAGGAAGATGAGGATGAGAGTGGAGAGCCG	7	+	12591915-12591964	7q11	PREDICTED: Rattus norvegicus synapse defective 1, Rho GTPase, homolog 1 (C. elegans) (predicted) (Syde1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661924-S	ILMN_68664	LOC501997	XM_577424.1	XM_577424.1		501997	62661924	XM_577424.1	LOC501997	XP_577424.1	ILMN_1359580	0005130129	S	1059	TGGGACAAGGGGAGGCTGCGTTGTTCTAGTGTCCTCCGCAGTGGCTTATC					PREDICTED: Rattus norvegicus similar to dehydrogenase/reductase member 2 (LOC501997), mRNA.					
Rattus norvegicus	RefSeq	GI_62647710-S	ILMN_270485	CCT7_PREDICTED	XM_001073942.1	XM_001073942.1		297406	109473820	XM_001073942.1	Cct7_predicted	XP_001073942.1	ILMN_1368272	0002850377	S	1355	TGGCTGGTGGTGGAGCCATTGAGATGGAGCTTTCCAAATACCTGCGGGAC				4q34	PREDICTED: Rattus norvegicus chaperonin subunit 7 (eta) (predicted) (Cct7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661276-S	ILMN_290760	RGD1564783_PREDICTED	XR_008887.1	XR_008887.1		501978	109502296	XR_008887.1	RGD1564783_predicted		ILMN_1369890	0000060711	S	222	GATCTGGGAGATGGCAGATGAACTGTGCCTGAAGGCGGAGAGCAAGATGG				15p14	PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (predicted) (RGD1564783_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638339-S	ILMN_265627	ARHGAP18_PREDICTED	XM_001062453.1	XM_001062453.1		293947	109460395	XM_001062453.1	Arhgap18_predicted	XP_001062453.1	ILMN_1349832	0000510128	S	1819	GCAAATGGTGCTGACGTTCCTCAGGGAGTGATTCGAGTGCAAGCTCCCCA				1p12	PREDICTED: Rattus norvegicus Rho GTPase activating protein 18 (predicted) (Arhgap18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653491-S	ILMN_55658	LOC500971	XM_576381.1	XM_576381.1		500971	62653491	XM_576381.1	LOC500971	XP_576381.1	ILMN_1356984	0003390242	S	1336	CTGCTGGCAATTCCAACTTGAACTACAACACAGAAGAGCATGTCAGCCGC				8q21	PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC500971), mRNA.					
Rattus norvegicus	RefSeq	GI_62638628-S	ILMN_59177	LOC499035	XM_579907.1	XM_579907.1		499035	62638628	XM_579907.1	LOC499035	XP_579907.1	ILMN_1366925	0002650138	S	584	TGCAGGACCTCCACTGTAGCAGAACCTTCAATTGTGCAGCAGCTCCACTG					PREDICTED: Rattus norvegicus LOC499035 (LOC499035), mRNA.					
Rattus norvegicus	RefSeq	GI_62645948-S	ILMN_281187	KIF16B_PREDICTED	XM_001053202.1	XM_001053202.1		311478	109470904	XM_001053202.1	Kif16b_predicted	XP_001053202.1	ILMN_1371860	0003870017	S	3797	CGAGCGGGTAGTTGCTGAGCGGCGGACACACTTAGAGAAATACCTCAGGG				3q41	PREDICTED: Rattus norvegicus kinesin family member 16B (predicted) (Kif16b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15431282-S	ILMN_268557	KCNK3	NM_033376.1	NM_033376.1		29553	15431282	NM_033376.1	Kcnk3	NP_203694.1	ILMN_1364257	0002850131	S	1854	TCTCCAAAGCCCAAGGTGTCTTTGTCCAGGTCACCCCCCACTCAGTCCCT	6	-	25746069-25746118	6q14	Rattus norvegicus potassium channel, subfamily K, member 3 (Kcnk3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	rTASK; Task-1	rTASK; Task-1
Rattus norvegicus	RefSeq	GI_62638835-S	ILMN_286461	AURKC_PREDICTED	XM_001067866.1	XM_001067866.1		292554	109461081	XM_001067866.1	Aurkc_predicted	XP_001067866.1	ILMN_1373971	0003170195	S	658	CAACGAGACGGTGGATCTGTGGTGCATTGGGGTGCTCTGCTATGAGCTGC				1q12	PREDICTED: Rattus norvegicus aurora kinase C (predicted) (Aurkc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718758-S	ILMN_59798	LOC307671	XM_226278.3	XM_226278.3		307671	62718758	XM_226278.3	LOC307671	XP_226278.3	ILMN_1362593	0003840273	S	605	CAACGTCCAGACCCAGCATCATCTGGAAAGTCCTTGGAAACACAGAAGAC					PREDICTED: Rattus norvegicus similar to HBxAg transactivated protein 2 (LOC307671), mRNA.					
Rattus norvegicus	RefSeq	GI_19705508-S	ILMN_265780	PMFBP1	NM_134393.1	NM_134393.1		171414	19705508	NM_134393.1	Pmfbp1	NP_599220.1	ILMN_1368825	0004810497	S	2976	ACTGGGCTGGAGAGGAGTATGCCAGGACCCACTGCCGAAAATGGACCTCA	19	+	39410434-39410483	19q12	Rattus norvegicus polyamine modulated factor 1 binding protein 1 (Pmfbp1), mRNA.	Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence NAS]		ODF3; Stap	ODF3; Stap
Rattus norvegicus	RefSeq	GI_8393056-S	ILMN_289589	SERPINH1	NM_017173.1	NM_017173.1		29345	8393056	NM_017173.1	Serpinh1	NP_058869.1	ILMN_1356806	0002940215	S	1840	TCGATTCTTTGCCGCAGCAGTGGGAGTTGGGGAGACCATGCATAGGAGGG	1	-	156667066-156667115	1q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade H, member 1 (Serpinh1), mRNA.	A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]	Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 32964] [evidence ISS]; The process leading to the attainment of the full functional capacity of a protein [goid 51604] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence TAS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]	Serpinh2; Cbp2	Serpinh2; Cbp2
Rattus norvegicus	RefSeq	GI_12083638-S	ILMN_52173	PORF1	NM_022688.1	NM_022688.1		64629	12083638	NM_022688.1	Porf1	NP_073179.1	ILMN_1354131	0006180037	S	517	TGCATGAACTGGGAAGCTGCTAACGGGGAGGAATTAGCGCCCCCACCCTA					Rattus norvegicus preoptic regulatory factor 1 (Porf1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34873163-S	ILMN_69001	LOC287518	XM_220690.2	XM_220690.2		287518	34873163	XM_220690.2	LOC287518	XP_220690.2	ILMN_1366724	0003170170	S	46	GGAGAGGGGAGTGTGGGAGTGAACTACTTTTGGTTTCCATGCAAGGGGAG				10q24	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC287518), mRNA.					
Rattus norvegicus	RefSeq	GI_62717795-S	ILMN_48542	LOC363306	XM_343647.2	XM_343647.2		363306	62717795	XM_343647.2	LOC363306	XP_343648.2	ILMN_1352300	0000520619	S	1418	CACCAATGCCCCCAGGAAAGGCTTTGGTTAAAGAAGGGAGGTACTGAGAT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC363306), mRNA.					
Rattus norvegicus	RefSeq	GI_34881292-S	ILMN_277579	RGD1563232_PREDICTED	XR_007585.1	XR_007585.1		302389	109512163	XR_007585.1	RGD1563232_predicted		ILMN_1352386	0006380035	S	335	AAGAAGAACACCCAAATTGGACTGTGGCGCAGGTGGCCAAGGCTGCCGGA				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1563232_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651142-S	ILMN_263474	RPS6KA5_PREDICTED	XM_001064992.1	XM_001064992.1		314384	109479856	XM_001064992.1	Rps6ka5_predicted	XP_001064992.1	ILMN_1371123	0003780040	S	2674	GGAGGAAAATGAAGAGGACCAGCACCAGCACAGAGACTCGCAGCAGCTCC				6q32	PREDICTED: Rattus norvegicus ribosomal protein S6 kinase, polypeptide 5 (predicted) (Rps6ka5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24475706-S	ILMN_288947	NRP2	NM_030869.2	NM_030869.2		81527	24475706	NM_030869.2	Nrp2	NP_110496.1	ILMN_2040866	0002360703	S	3229	CAGGCCAGTCTAGGAGAAAGGAAGATGCAGCCGTGAAGGGGATCATTGCC	9	+	61460338-61460387	9q31	Rattus norvegicus neuropilin 2 (Nrp2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a lower concentration, in a concentration gradient of a specific chemical [goid 50919] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 17154] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_35215310-S	ILMN_291962	FUT11	NM_173308.1	NM_173308.1		286971	35215310	NM_173308.1	Fut11	NP_775430.1	ILMN_1365522	0001990112	S	1200	TGGCTTTGAGTGTTTCGTCTGTGACCATGAACTGGCTCGGCTGGATGCCG	15	-	3826473-3826522	15p16	Rattus norvegicus fucosyltransferase 11 (Fut11), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	MGC94472	MGC94472
Rattus norvegicus	RefSeq	GI_62638790-S	ILMN_66936	LOC499056	XM_574335.1	XM_574335.1		499056	62638790	XM_574335.1	LOC499056	XP_574335.1	ILMN_1351701	0007000438	S	2295	GGAGAGAGACCTTACAAATTCCCAGGTGCTGTGGGAGCCGCGGATTACCA				1q12	PREDICTED: Rattus norvegicus similar to 3110052M02Rik protein (LOC499056), mRNA.					
Rattus norvegicus	RefSeq	GI_56090653-S	ILMN_275579	NUAK2	NM_001007617.1	NM_001007617.1		289419	56090653	NM_001007617.1	Nuak2	NP_001007618.1	ILMN_1352038	0001770014	S	2645	TGCTGCTTTCGGTAATGTGAATGCTGTGTTCTGGGGAAAGCCACTGTGTC	13	+	45222087-45222136	13q13	Rattus norvegicus NUAK family, SNF1-like kinase, 2 (Nuak2), mRNA.	A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence IDA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC93817; 1200013b22rik; Snark	MGC93817; 1200013b22rik; Snark
Rattus norvegicus	RefSeq	GI_62659005-S	ILMN_60365	RGD1309359_PREDICTED	XM_222229.4	XM_222229.4		288702	109496019	XM_222229.4	RGD1309359_predicted	XP_222229.2	ILMN_1363417	0000940369	S	383	TGGACGTAGACATCAGCGTGGGGCGTTTCGTCCGCTATCAGTTCACGCCA	12	+	42758142-42758191	12q16	PREDICTED: Rattus norvegicus similar to Unc-119 protein homolog (Retinal protein 4) (RRG4) (predicted) (RGD1309359_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645413-S	ILMN_269846	SLC35C1_PREDICTED	XM_001078382.1	XM_001078382.1		311204	109470338	XM_001078382.1	Slc35c1_predicted	XP_001078382.1	ILMN_1359570	0000940138	S	3233	TGGGGACAGAAGTACCGGACCATGATACCCCAGCACCACACCCTCCTAAC				3q24	PREDICTED: Rattus norvegicus solute carrier family 35, member C1 (predicted) (Slc35c1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667167-S	ILMN_69982	LOC501615	XM_577013.1	XM_577013.1		501615	62667167	XM_577013.1	LOC501615	XP_577013.1	ILMN_1374822	0003870086	S	164	CGGAACACCCACCGTGAGACAGTCTGGGAAGAGTTCATAGTGCTGTGCAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632419I22 (LOC501615), mRNA.					
Rattus norvegicus	RefSeq	GI_62658512-S	ILMN_54560	LOC498151	XM_573362.1	XM_573362.1		498151	62658512	XM_573362.1	LOC498151	XP_573362.1	ILMN_1349719	0006200253	S	579	CCTCAGCCATCGATTTTCTCACGTGTCATGCCTGTGCCTTTGAGGGACCC					PREDICTED: Rattus norvegicus similar to IQ motif containing E (LOC498151), mRNA.					
Rattus norvegicus	RefSeq	GI_62651927-S	ILMN_66604	KLF16_PREDICTED	XM_345792.2	XM_345792.2		366828	62651927	XM_345792.2	Klf16_predicted	XP_345793.2	ILMN_1373485	0002190195	S	718	ACATTCTTACTGGACCTGGTGAGCGGCCCTTTGCCTGTGATTGGCCTGGC					PREDICTED: Rattus norvegicus Kruppel-like factor 16 (predicted) (Klf16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577536-S	ILMN_287151	OLR505	NM_001000679.1	NM_001000679.1		404882	47577536	NM_001000679.1	Olr505	NP_001000679.1	ILMN_1357305	0000380102	S	689	CTGCCGAGGGCAGGAAGAAGGCTTTCTCCACCTGTGGGTCTCATTTGACT	3	-	69648880-69648929	3q24	Rattus norvegicus olfactory receptor 505 (Olr505), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr505	Olr505
Rattus norvegicus	RefSeq	GI_62644442-S	ILMN_275669	LOC365948	XM_001077928.1	XM_001077928.1		365948	109467688	XM_001077928.1	LOC365948	XP_001077928.1	ILMN_1369204	0006660551	S	2092	ATGGAAGGCCCAACCTTCCCTACTGCAAGGGGCTACCTGACCACTGGACA				2q43	PREDICTED: Rattus norvegicus similar to AVIEF (LOC365948), mRNA.					
Rattus norvegicus	RefSeq	GI_11177899-S	ILMN_264760	HTR1F	NM_021857.1	NM_021857.1		60448	11177899	NM_021857.1	Htr1f	NP_068629.1	ILMN_1371233	0004590671	S	858	TCGAGAACGCAAAGCAGCCACTACCCTGGGATTGATCTTGGGCGCATTTG	11	-	2260780-2260829	11p12	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 1F (Htr1f), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Htr1eb	Htr1eb
Rattus norvegicus	RefSeq	GI_62652715-S	ILMN_270211	CDC42EP1_PREDICTED	XM_001076184.1	XM_001076184.1		315121	109482547	XM_001076184.1	Cdc42ep1_predicted	XP_001076184.1	ILMN_1366428	0002470441	S	1297	CACGGTGCAGGCCAATGCCTTTGAGTTTGCTGACGCTGATGAGGATGACG				7q34	PREDICTED: Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 1 (predicted) (Cdc42ep1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650726-S	ILMN_51352	FBXO33_PREDICTED	XM_234205.4	XM_234205.4		314157	109478204	XM_234205.4	Fbxo33_predicted	XP_234205.4	ILMN_1372821	0006200133	S	3040	GCCCAGCAGTGCTGAGACCTGGCTGCTCTATTGTACGCTTTGGAAACACA	6	-	79902857-79902906	6q23	PREDICTED: Rattus norvegicus F-box only protein 33 (predicted) (Fbxo33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880667-S	ILMN_289170	LOC682072	XM_001056160.1	XM_001056160.1		682072	109511842	XM_001056160.1	LOC682072	XP_001056160.1	ILMN_1369679	0004060041	S	400	AGCACAGCTGGCCATCAGAGTCACCAATCCCAACGACAGGCTATGCAGCA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L32 (LOC682072), mRNA.					
Rattus norvegicus	RefSeq	GI_40254755-S	ILMN_263671	SMARCD2	NM_031983.2	NM_031983.2		83833	40254755	NM_031983.2	Smarcd2	NP_114189.1	ILMN_1371995	0004920300	S	2369	CCTCCTGAGGGTGGGAATGTGCCAGCTCTCTAACCCAGCTAAAGAAGGGG	10	-	95657132-95657181	10q32.1	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (Smarcd2), mRNA.	Any of a family of protein complexes that regulate transcription by remodeling chromatin. Swi/Snf complexes comprise nine or more proteins, including both conserved (core) and nonconserved components; the Swi2/Snf2 ATPase is one of the core components [goid 16514] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	BAF60b	BAF60b
Rattus norvegicus	RefSeq	GI_8393569-S	ILMN_52838	HSD11B1	NM_017080.2	NM_017080.2		25116	78214364	NM_017080.2	Hsd11b1	NP_058776.2	ILMN_1369135	0001090044	S	1217	GGCCTGGTGAAGGGTCTTGGAACAGTCCTGCCTGATATTTCTGTGAGCCC	13	-	109063757-109063806	13q27	Rattus norvegicus hydroxysteroid 11-beta dehydrogenase 1 (Hsd11b1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6713] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that modulates the frequency, rate or extent of the pentose-phosphate shunt, the process by which glucose is oxidized, coupled to NADPH synthesis [goid 43456] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence IDA]; Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence ISS]; Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence IMP]; Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence ISS]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time [goid 3964] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	LRRGT00065	LRRGT00065
Rattus norvegicus	RefSeq	GI_62641798-S	ILMN_266084	SLC22A12	NM_001034943.1	NM_001034943.1		365398	77917583	NM_001034943.1	Slc22a12	NP_001030115.1	ILMN_1360391	0002810035	S	1727	TGTCTATGGCTCCTGGCTGCCTCTGCTGGTGTATGGAGTGGTGCCAGTGT	1	-	209321743-209321792	1q43	Rattus norvegicus solute carrier family 22 (organic anion/urate transporter), member 12 (Slc22a12), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence ISS]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of urate into, out of, within or between cells [goid 15747] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; The directed movement of urate into, out of, within or between cells [goid 15747] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of urate from one side of the membrane to the other. Urate is the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals [goid 15143] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]	MGC124974; Slc22al2; Rst	MGC124974; Slc22al2; Rst
Rattus norvegicus	RefSeq	GI_57900651-S	ILMN_275791	CCND2	NM_022267.1	NM_022267.1		64033	57900651	NM_022267.1	Ccnd2	NP_071603.1	ILMN_1362471	0006660193	S	1334	CCCAAGAAGGAATCAGAAATGAGAAGGGACACAGCTGGGGAGGTTATGCC	4	-	163523847-163523896	4q42	Rattus norvegicus cyclin D2 (Ccnd2), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence IEA]; Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence TAS]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IMP]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEP]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEP]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of CDK activity [goid 45737] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of CDK activity [goid 45737] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58332867-S	ILMN_299671	ATP2B2	NM_012508.3	NM_012508.3		24215	58332867	NM_012508.3	Atp2b2	NP_036640.1	ILMN_1371391	0005390605	S	4071	CCTGACGACCGACACGAGCAAATCAGCTACCTCTTCAAGTCCAGGGAGCC				4q42	Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 2 (Atp2b2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that modulates the size of a cell [goid 8361] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence ISS]; The process by which the anatomical structure of the cerebellar Purkinje cell layer is generated and organized. Morphogenesis pertains to the creation of form. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells [goid 21692] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar granule cell. Differentiation includes the processes involved in commitment of a neuroblast to a granule cell fate. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21707] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The precipitation of specific crystal forms of calcium carbonate with extracellular matrix proteins in the otolith organs of the vertebrate inner ear [goid 45299] [evidence ISS]; The chemical reactions and pathways involving cyclic GMP, guanosine 3',5'-phosphate [goid 46068] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence ISS]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of calcium ion (Ca2+) [goid 30899] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928721-S	ILMN_54062	BCL2L1	NM_031535.2	NM_031535.2		24888	75992933	NM_031535.2	Bcl2l1	NP_113723.2	ILMN_1365285	0005910632	S	1685	CACTGTGGTAGGCATTTACCGTTCGGAGGGAACTCCATTCTGGAATAGGG	3	-	143176991-143177040	3q41	Rattus norvegicus Bcl2-like 1 (Bcl2l1), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence TAS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 44429] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloheximide stimulus. Cycloheximide (actidione) is an antibiotic produced by some Streptomyces species which interferes with protein synthesis in eukaryotes [goid 46898] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 18250306] [evidence IPI]	Bcl-xl; Bcl2l; bcl-X; Bclx	Bcl-xl; Bcl2l; bcl-X; Bclx
Rattus norvegicus	RefSeq	GI_16758917-S	ILMN_297525	B3GAT1	NM_054003.1	NM_054003.1		117108	16758917	NM_054003.1	B3gat1	NP_446455.1	ILMN_1356090	0006550739	S	1918	CGTGTCCTTCAAGCCTCCTGTGCCAGAATCAGTCAGGTGGTGGGCCTAGA	8	+	26358896-26358945	8q13	Rattus norvegicus beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) (B3gat1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks [goid 5796] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: UDP-galactose + N-acetylglucosamine = galactose-beta-1,3-N-acetylglucosamine + UDP [goid 8499] [evidence ISS]; Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein [goid 15018] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein [goid 15018] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hnk-1	Hnk-1
Rattus norvegicus	RefSeq	GI_62717766-S	ILMN_69415	LOC503286	XM_578821.1	XM_578821.1		503286	62717766	XM_578821.1	LOC503286	XP_578821.1	ILMN_1359546	0003390670	S	369	CCCAGCCATCACCCTGAATGTTCACTTGTGTTCTTCTACCTACAGACGCT					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC503286), mRNA.					
Rattus norvegicus	RefSeq	GI_62719322-S	ILMN_69562	DNM1	NM_080689.3	NM_080689.3		140694	62719322	NM_080689.3	Dnm1	NP_542420.1	ILMN_1359581	0004230576	S	2893	GCCTCGCCTGTAGTGTCAGAATCAACCACCATGCTGTCCTTGTGGAGTCC	3	-	11434995-11435044	3p11	Rattus norvegicus dynamin 1 (Dnm1), mRNA.	Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10908605] [evidence EXP]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IMP]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The process by which cell surface receptors are monoubiquitinated following ligand-induced activation, and subsequently taken up into endocytic vesicles and targeted to the lysosome or vacuole for degradation; serves as a mechanism to downregulate receptor signaling [goid 31623] [pmid 11100149] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [pmid 10908605] [evidence EXP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Dnm	Dnm
Rattus norvegicus	RefSeq	GI_42476053-S	ILMN_290098	SCARB2	NM_054001.2	NM_054001.2		117106	42476053	NM_054001.2	Scarb2	NP_446453.1	ILMN_1361889	0006100600	S	1864	CTCCTGGACAGAGGGGACCGAGCAGGTGACATGGCTGGCAATTACGCTTT	14	+	17170731-17170780	14p22	Rattus norvegicus scavenger receptor class B, member 2 (Scarb2), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence TAS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	LGP85; Cd36l2; LimpII	LGP85; Cd36l2; LimpII
Rattus norvegicus	RefSeq	GI_62658566-S	ILMN_280138	RGD1562172_PREDICTED	XM_001075411.1	XM_001075411.1		498159	109496755	XM_001075411.1	RGD1562172_predicted	XP_001075411.1	ILMN_1355878	0000870750	S	495	AGTGCCATCAGCTGCAACCCCTGCCTCAGCATCTCAGCCAATCCAGCATT				12q11	PREDICTED: Rattus norvegicus similar to Sprouty homolog 3 (Spry-3) (predicted) (RGD1562172_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605841-S	ILMN_302438	UBE2F	NM_001008381.1	NM_001008381.1		363284	56605841	NM_001008381.1	Ube2f	NP_001008382.1	ILMN_1363916	0002350292	S	697	GTCCTGAAGAAGACCCTCCTGACTACCCACTGTAGGTGGAGAACAACACA	9	+	90515490-90515539	9q36	Rattus norvegicus ubiquitin-conjugating enzyme E2F (putative) (Ube2f), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]	RGD1307608; MGC105540	RGD1307608; MGC105540
Rattus norvegicus	RefSeq	GI_34933274-S	ILMN_60752	RGD1563155_PREDICTED	XM_346271.2	XM_346271.2		367734	109510458	XM_346271.2	RGD1563155_predicted	XP_346272.1	ILMN_1366974	0000050435	S	83	CCATCATGTCGGGGAAGAAGAGCCAAGAGAAGGCTTGCAGCGACAACAAG	X	-	25064651-25064700	Xq13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700054O13 (predicted) (RGD1563155_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.1066	ILMN_160749	RN.1066	Rn.1066		Rn.1066		50385120	CO572491			ILMN_1530338	0003850332	S	17	TCAAATTGTACCACAGGAAACTGAGGGCCAAAGACACTGCTAATGTGAAG					AGENCOURT_28539003 NIH_MGC_249 Rattus norvegicus cDNA clone IMAGE:7376838 5', mRNA					
Rattus norvegicus	RefSeq	GI_62650532-S	ILMN_64535	LOC298931	XM_234023.3	XM_234023.3		298931	62650532	XM_234023.3	LOC298931	XP_234023.3	ILMN_1359601	0002260619	S	797	GCTGATCCGGTTCCCTATTCAAAGGAACTTGAACTGGAGGGTGTGTGCCT				6q16	PREDICTED: Rattus norvegicus similar to Aldose reductase (AR) (Aldehyde reductase) (LOC298931), mRNA.					
Rattus norvegicus	RefSeq	GI_62660557-I	ILMN_267889	SLIT2	XM_001057837.1	XM_001057837.1		360272	109500696	XM_001057837.1	Slit2	XP_001057837.1	ILMN_1376107	0003990722	S	4924	ACGACTAAGAAAGTATCTCGCTTGGAGTGCAGAGGCGGGTGTGCTGGGGG				14q11	PREDICTED: Rattus norvegicus slit homolog 2 (Drosophila) (Slit2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The migration of mesodermal cells during gastrulation to help establish the multilayered body plan of the organism [goid 7509] [evidence ISS]; The migration of mesodermal cells during gastrulation to help establish the multilayered body plan of the organism [goid 7509] [evidence IEA]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence ISS]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence IEA]; Any process that initiates the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical [goid 50929] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical [goid 50929] [evidence IEA]	Combining with follicle-stimulating hormone to initiate a change in cell activity [goid 4963] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27700384-S	ILMN_161786	LOC305894	XM_240182.1	XM_240182.1			27700384	XM_240182.1	LOC305894		ILMN_2040362	0007210193	S	4136	CCCCGTTTCCCTACAGAAGTGTAGCTCGGAAGCTGGATGTCACTTTGGTG										
Rattus norvegicus	RefSeq	GI_62659550-S	ILMN_56141	ABL2	XM_222768.3	XM_222768.3		304883	62659550	XM_222768.3	Abl2	XP_222768.3	ILMN_1351581	0002370438	S	2613	CAGTACCTTTTTGAAACTGTGGCTGGCCTGGGGACCTGGGACTGAGGAGC				13q22	PREDICTED: Rattus norvegicus Abelson murine leukemia viral (v-abl) oncogene homolog 2 (Abl2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered [goid 51353] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642816-S	ILMN_62477	PTCD2_PREDICTED	XM_226716.3	XM_226716.3		310025	62642816	XM_226716.3	Ptcd2_predicted	XP_226716.3	ILMN_1373965	0000510364	S	904	CGTTCTCAGAGGAAGTGGTAAGTCTGTCGGCGCTGCAGGTGGCACTGAGG				2q12	PREDICTED: Rattus norvegicus pentatricopeptide repeat domain 2 (predicted) (Ptcd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658118-S	ILMN_49289	LOC363806	XM_344032.2	XM_344032.2		363806	62658118	XM_344032.2	LOC363806	XP_344033.2	ILMN_1348902	0005290541	S	249	GCCCTGTCTGGGGCAGATCATGGACCTGCTGAAACTGCACAGCTTGATCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700060E02 (LOC363806), mRNA.					
Rattus norvegicus	RefSeq	GI_27682604-S	ILMN_57011	LOC309309	XM_219782.1	XM_219782.1		309309	27682604	XM_219782.1	LOC309309	XP_219782.1	ILMN_1374824	0006100315	S	353	GGAACCAGTGGAGGAAACGGCTGATACTAAGGCCTCTGCAGCCAAAGAGC					PREDICTED: Rattus norvegicus similar to Coiled-coil-helix-coiled-coil-helix domain containing 4 (LOC309309), mRNA.					
Rattus norvegicus	RefSeq	GI_62659830-S	ILMN_48647	LOC501873	XM_577292.1	XM_577292.1		501873	62659830	XM_577292.1	LOC501873	XP_577292.1	ILMN_1355464	0003990008	S	332	TGTGAGGAAGCCCAACTGCAGCCATGATGTGAGGAAGCCCAACTGCAGCC					PREDICTED: Rattus norvegicus similar to secretory, endostyle (zone2) (LOC501873), mRNA.					
Rattus norvegicus	RefSeq	GI_62663289-S	ILMN_56978	LOC306792	XM_225216.4	XM_225216.4		306792	109504702	XM_225216.4	LOC306792	XP_225216.2	ILMN_1373923	0004810204	S	1301	ATGCGGCGTGCTTTCTTCCGGTTGGTGTGCGGCTGTCTGGTCAAGGGCAA	17	-	19660144-19660193	17p14	PREDICTED: Rattus norvegicus similar to Sphingosine 1-phosphate receptor Edg-3 (S1P receptor Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) (Lysophospholipid receptor B3) (LOC306792), mRNA.					
Rattus norvegicus	RefSeq	GI_27703779-S	ILMN_272248	RGD1564807_PREDICTED	XM_225049.1	XM_225049.1		290911	27703779	XM_225049.1	RGD1564807_predicted	XP_225049.1	ILMN_1370944	0004010242	S	780	CTCCATCCTAGAAGAGTGGAAGCCTTTCGTGATGCAACAGCCCTCTGCCC	16	-	86124659-86124708	16q12.5	PREDICTED: Rattus norvegicus similar to zinc finger protein, subfamily 1A, 5 (predicted) (RGD1564807_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652151-S	ILMN_54722	ELK3_PREDICTED	XM_343198.3	XM_343198.3		362871	109480446	XM_343198.3	Elk3_predicted	XP_343199.3	ILMN_1373250	0004050592	S	1515	GCTGAGTCCCGCTAGGCTGCAAGGGCCAAACACACTTTTCCAGTTCCCCA	7	-	30281635-30281642:30286047-30286088	7q13	PREDICTED: Rattus norvegicus ELK3, member of ETS oncogene family (predicted) (Elk3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666216-S	ILMN_301530	RGD1564977_PREDICTED	XM_577938.1	XM_577938.1		502457	62666216	XM_577938.1	RGD1564977_predicted	XP_577938.1	ILMN_1373763	0002230128	S	556	CTGGCTGCCACGGACGGTGTTTCCAATGAATCCTCAAGTTATAGCAACCC	20	+	38257726-38257775	20q12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (predicted) (RGD1564977_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659672-S	ILMN_62251	LOC360868	XM_341144.2	XM_341144.2		360868	62659672	XM_341144.2	LOC360868	XP_341145.2	ILMN_1361083	0005900411	S	409	GCGCCTGGGGTCTGCCTGTGTTAGGTGGTCACTACTGGCTCATGCGATTA				13q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010005O13 (predicted) (LOC360868), mRNA.					
Rattus norvegicus	RefSeq	GI_62655813-S	ILMN_289773	RGD1306143_PREDICTED	XM_001057264.1	XM_001057264.1		287110	109490294	XM_001057264.1	RGD1306143_predicted	XP_001057264.1	ILMN_1370531	0002650010	S	1654	ATGTTCATGGCTGGGGGCAACGACTGCCTCATCATTGGGGGAGGAGGTGG				10q12	PREDICTED: Rattus norvegicus similar to CG9339-PA (predicted) (RGD1306143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27666787-S	ILMN_265956	WDR5B	NM_001024766.1	NM_001024766.1		303907	67078489	NM_001024766.1	Wdr5b	NP_001019937.1	ILMN_1372008	0000580017	S	943	CCGGAAGCTATGATGGTCTTTGTAGAATTTGGGATGCTGCGTCAGGCCAG	11	-	66546875-66546924	11q22	Rattus norvegicus WD repeat domain 5B (Wdr5b), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62657953-S	ILMN_265956	WDR5B	NM_001024766.1	NM_001024766.1		303907	67078489	NM_001024766.1	Wdr5b	NP_001019937.1	ILMN_1370014	0005900332	S	1619	CCATCCCCCTCTGGGAAAGCTATTGAAAGAGAACGAGACACTGTCCAGGG	11	-	66546199-66546248	11q22	Rattus norvegicus WD repeat domain 5B (Wdr5b), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62657056-S	ILMN_62961	RGD1308881_PREDICTED	XM_220981.4	XM_220981.4		303542	109489026	XM_220981.4	RGD1308881_predicted	XP_220981.4	ILMN_1361768	0006100064	S	148	TGGCAGCGGCGGAAACTAGAACAGAGCACACTGAACGTGAGCCAGAGCCA	10	-	89706860-89706909	10q32.1	PREDICTED: Rattus norvegicus similar to D11lgp1 (predicted) (RGD1308881_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657054-S	ILMN_62961	RGD1308881_PREDICTED	XM_220981.4	XM_220981.4		303542	109489026	XM_220981.4	RGD1308881_predicted	XP_220981.4	ILMN_1373401	0006200142	S	1405	AAGTCCTTGCGGTTCTGGGGCAGCGTGGGTCCTGCCAAAGTCCATCTGGT	10	-	89703871-89703920	10q32.1	PREDICTED: Rattus norvegicus similar to D11lgp1 (predicted) (RGD1308881_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657076-S	ILMN_281794	NBR1	NM_001024765.1	NM_001024765.1		303554	67078487	NM_001024765.1	Nbr1	NP_001019936.1	ILMN_1359440	0004210242	S	2296	CCTGAAGAAGGACCACATGGAGATGAGAGGGAGGAGATTGTCCACATTGC	10	+	90594713-90594762	10q32.1	Rattus norvegicus neighbor of Brca1 gene 1 (Nbr1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1311421; Ca125	RGD1311421; Ca125
Rattus norvegicus	RefSeq	GI_62648228-S	ILMN_273452	RGD1563517_PREDICTED	XM_001068837.1	XM_001068837.1		500336	109474315	XM_001068837.1	RGD1563517_predicted	XP_001068837.1	ILMN_1364515	0006860021	S	392	CTCTTGTGAAGACCGCCAGCCAGAGCACGCTGAAATACATCACAGACAGG				4q42	PREDICTED: Rattus norvegicus similar to C-type lectin-like receptor 2 (predicted) (RGD1563517_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652285-A	ILMN_275308	LOC362901	NM_001008877.1	NM_001008877.1		362901	57114347	NM_001008877.1	LOC362901	NP_001008877.1	ILMN_1376518	0000130170	S	967	GGCCCTGGCACTTGTTTGGTTTCTACGGCTGGGGAGTGGAACGGCAGAAT	7	-	72254768-72254817	7q22	Rattus norvegicus Ac1254 (LOC362901), mRNA.					
Rattus norvegicus	RefSeq	GI_62654487-S	ILMN_59380	ENDOGL1_PREDICTED	XM_236696.3	XM_236696.3		301062	109484090	XM_236696.3	Endogl1_predicted	XP_236696.3	ILMN_1367283	0006980167	S	805	AGCCATCGGGTTCCAGTCCCAGTTAAGCGAGTTCCAGGTGAGCCTCCATG	8	+	124426887-124426936	8q32	PREDICTED: Rattus norvegicus endonuclease G-like 1 (predicted) (Endogl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661235-S	ILMN_68917	LOC498483	XM_573741.1	XM_573741.1		498483	62661235	XM_573741.1	LOC498483	XP_573741.1	ILMN_1361120	0003290020	S	2406	CTTTGTCTGTGGTTACAGGGACCCGTGATTTTCAACACACTCATGGCATG					PREDICTED: Rattus norvegicus similar to Smad nuclear interacting protein 1 (LOC498483), mRNA.					
Rattus norvegicus	RefSeq	GI_62644569-I	ILMN_59701	PIGK_PREDICTED	XM_575063.1	XM_575063.1		295543	62644569	XM_575063.1	Pigk_predicted	XP_575063.1	ILMN_1375262	0006860600	S	55	GGGACCTGAATCGTTTGAAGTCTGTCTGGTTAGTGGCTTGGGAAGAACAG				2q45	PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class K (predicted) (Pigk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527006-S	ILMN_298644	SPC25	NM_001009654.1	NM_001009654.1		295661	57527006	NM_001009654.1	Spc25	NP_001009654.1	ILMN_1365457	0000380427	S	908	GCGGCATAGTCAGAAAAATTTTGCCCTCCCTCAGTCTGCCTAATCGTGGG	3	-	51361482-51361531	3q21	Rattus norvegicus SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) (Spc25), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Spc25; MGC108932; RGD1307811	Spc25; MGC108932; RGD1307811
Rattus norvegicus	RefSeq	GI_47576296-S	ILMN_301313	OLR1279	NM_001000961.1	NM_001000961.1		405313	47576296	NM_001000961.1	Olr1279	NP_001000961.1	ILMN_1356791	0003390121	S	777	TCTACAGCCATCTTCAGTCAGCTCCATTGACCAAGGGAAAGTATCATCAG	8	-	41309494-41309543	8q22	Rattus norvegicus olfactory receptor 1279 (Olr1279), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1279	Olr1279
Rattus norvegicus	RefSeq	GI_62641875	ILMN_62926	RGD1304670_PREDICTED	XM_342022.2	XM_342022.2		361729	62641875	XM_342022.2	RGD1304670_predicted	XP_342023.2	ILMN_1650159	0005360446	S	704	TGACTGACAGACAGTTGCTGCTCCAGCTGCTACCTGGATCCCGCCCTTTA				1q43	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC20446 (predicted) (RGD1304670_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647927-S	ILMN_67060	LOC502871	XM_578372.1	XM_578372.1		502871	62647927	XM_578372.1	LOC502871	XP_578372.1	ILMN_1370906	0002940609	S	1305	GCACCTATGGGAGTACAGCTTCTGCCTGCACTTGTAGAAATGAGTGCGTC					PREDICTED: Rattus norvegicus similar to glutamate receptor, metabotropic 7 (LOC502871), mRNA.					
Rattus norvegicus	RefSeq	GI_62655326-S	ILMN_290581	TRIP12	NM_001031659.1	NM_001031659.1		316575	72535135	NM_001031659.1	Trip12	NP_001026829.1	ILMN_1353794	0004230541	S	5828	GCAGCAGAGGTTGTTTCTCCAGTTTGTGACTGGTAGCCCACGATTGCCAG	9	-	83963331-83963380	9q35	Rattus norvegicus thyroid hormone receptor interactor 12 (Trip12), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]	MGC125132; Gtl6; MGC124674	MGC125132; Gtl6; MGC124674
Rattus norvegicus	RefSeq	GI_34101283-S	ILMN_285386	UBE2V2	NM_183052.1	NM_183052.1		287927	34101283	NM_183052.1	Ube2v2	NP_898875.1	ILMN_1364070	0003710273	S	2906	GGTCTCATGTTGTCTTTGTGTATGCTACCCAAGGCTGTTGTCAGACAGAG	11	+	87249390-87249439	11q23	Rattus norvegicus ubiquitin-conjugating enzyme E2 variant 2 (Ube2v2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A heterodimeric ubiquitin conjugating enzyme complex that catalyzes assembly of K63-linked polyubiquitin chains, which act as a signal to promote error-free DNA postreplication repair; in Saccharomyces the complex comprises Ubc13p and Mms2p [goid 31372] [evidence ISS]	The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang [goid 729] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]	MMS2; MGC105268	MMS2; MGC105268
Rattus norvegicus	RefSeq	GI_62647911-S	ILMN_66320	LOC500285	XM_575635.1	XM_575635.1		500285	62647911	XM_575635.1	LOC500285	XP_575635.1	ILMN_1373251	0003390114	S	120	AGACTGCATGCCATCATCGGAGCCCAATTCTCCCACCAAAACAAACACGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500285), mRNA.					
Rattus norvegicus	RefSeq	GI_62642790-S	ILMN_272770	POLK	XM_001060864.1	XM_001060864.1		171525	109465835	XM_001060864.1	Polk	XP_001060864.1	ILMN_1362739	0006110075	S	2691	AGGGCAGGCCGGAAGACAAAGGGCTCAACATCGAAGAGAACAAAACCCCG				2q12	PREDICTED: Rattus norvegicus polymerase (DNA directed) kappa (Polk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666349-S	ILMN_70157	LOC365599	XM_345121.2	XM_345121.2		365599	62666349	XM_345121.2	LOC365599	XP_345122.2	ILMN_1369477	0006900451	S	633	CTACCGGACATCTCGGGAACTGCGTCCTCTGAGCCTGGTCCTGTTTCTGA					PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC365599), mRNA.					
Rattus norvegicus	RefSeq	GI_62646988-S	ILMN_266911	RGD1562026_PREDICTED	XM_001066241.1	XM_001066241.1		500074	109473313	XM_001066241.1	RGD1562026_predicted	XP_001066241.1	ILMN_1353312	0005390450	S	511	CACTTGCTCTCCACACTTGGATCAGCTGTGAGTGTCGCCCTGACTGCCAG				4q22	PREDICTED: Rattus norvegicus RGD1562026 (predicted) (RGD1562026_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643811-S	ILMN_66110	LOC310615	XM_227389.3	XM_227389.3		310615	62643811	XM_227389.3	LOC310615	XP_227389.3	ILMN_1374732	0000840072	S	2446	AATCGTCTGTCTGGAGGTCAGAGCCTGTTGGAAAGCAAGGTGTAGAGGGG				2q34	PREDICTED: Rattus norvegicus similar to 4632407F12Rik protein (predicted) (LOC310615), mRNA.					
Rattus norvegicus	RefSeq	GI_62662611-S	ILMN_65005	LOC290710	XM_224826.3	XM_224826.3		290710	62662611	XM_224826.3	LOC290710	XP_224826.3	ILMN_1357321	0001980348	S	846	AAACATGCCCACTCAGTGTGTGTCTGGGACCGCCAAGTGGCAGTGGCGTT					PREDICTED: Rattus norvegicus similar to myeloid-associated differentiation marker (LOC290710), mRNA.					
Rattus norvegicus	RefSeq	GI_62645020-S	ILMN_60696	LOC499788	XM_575123.1	XM_575123.1		499788	62645020	XM_575123.1	LOC499788	XP_575123.1	ILMN_1365678	0002360452	S	400	GTACTGCCTCAGGTACTCCCTCCTACGAAGTGAGTCTATTCGGCTGAAGC					PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC499788), mRNA.					
Rattus norvegicus	RefSeq	GI_62644348	ILMN_48857	RGD1559838_PREDICTED	XM_578077.2	XM_578077.2		502591	109465418	XM_578077.2	RGD1559838_predicted	XP_578077.2	ILMN_1650875	0004780181	S	491	CTGTACTCTCTGCAGTGCCCAGCACGGACGGCTGTAAAGACGAAGGAACG	2	+	202470823-202470872	2q34	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1559838_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664403-S	ILMN_49302	DMXL1_PREDICTED	XM_225941.4	XM_225941.4		307429	109506580	XM_225941.4	Dmxl1_predicted	XP_225941.4	ILMN_1360746	0003990088	S	7658	GTCACACTTCTGAAGAGAATGTGTCTGCAGGCCCTGCAATACTCCGTCAC	18	+	44943934-44943983	18q11	PREDICTED: Rattus norvegicus Dmx-like 1 (predicted) (Dmxl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526956-S	ILMN_298953	ACY3	NM_001009603.1	NM_001009603.1		293653	57526956	NM_001009603.1	Acy3	NP_001009603.1	ILMN_1365135	0006510180	S	1201	GGGTCTCAAGACACAGTTCCAAGTCCGGGGTCTCCTGTCTCACTCTGGAC	1	+	206572724-206572773	1q42	Rattus norvegicus aspartoacylase (aminocyclase) 3 (Acy3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid [goid 4046] [evidence IEA]; Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid [goid 4046] [evidence ISS]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC108859; RGD1305394	MGC108859; RGD1305394
Rattus norvegicus	RefSeq	GI_62644005-S	ILMN_287900	LOC502561	XR_006577.1	XR_006577.1		502561	109465190	XR_006577.1	LOC502561		ILMN_1365414	0002630070	S	852	CCACTCTCATCCTGGCTGACCTCCACAACGCAGACCACCTGAAGACTAAG	2	-	188287063-188287112	2q34	PREDICTED: Rattus norvegicus hypothetical LOC502561 (LOC502561), mRNA.					
Rattus norvegicus	RefSeq	GI_62664222-S	ILMN_50830	LOC497721	XM_579695.1	XM_579695.1		497721	62664222	XM_579695.1	LOC497721	XP_579695.1	ILMN_1359023	0003850086	S	2316	CTGTGCCCGAGGGACACTTTCCTAGCCACCTAGTGGATGTCAGCAGTGCT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_173099 (LOC497721), mRNA.					
Rattus norvegicus	RefSeq	GI_62662166-S	ILMN_297083	ACTR8_PREDICTED	XM_001063449.1	XM_001063449.1		361107	109503819	XM_001063449.1	Actr8_predicted	XP_001063449.1	ILMN_1363610	0002650687	S	1868	GGCTGATTTCGTGGAAGGGGGGTGCAGTGTTGGCGTGTTTGGACACCACT				16p16	PREDICTED: Rattus norvegicus ARP8 actin-related protein 8 homolog (S. cerevisiae) (predicted) (Actr8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663272-S	ILMN_51962	ROR2_PREDICTED	XM_225181.4	XM_225181.4		306782	109504681	XM_225181.4	Ror2_predicted	XP_225181.4	ILMN_1372250	0005670079	S	3382	GGCTCCACCAGCACTGGCTATGTCACCACGGCACCCTCTAACACATCTGT	17	-	17737091-17737140	17p14	PREDICTED: Rattus norvegicus receptor tyrosine kinase-like orphan receptor 2 (predicted) (Ror2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758055-S	ILMN_288920	ACOX3	NM_053339.1	NM_053339.1		83522	16758055	NM_053339.1	Acox3	NP_445791.1	ILMN_1350613	0006860035	S	2473	ACCATACGTCTGTTTACCGGCCACTTGCCACTCTGTACCCATGGACTGTC	14	-	80769074-80769123	14q21	Rattus norvegicus acyl-Coenzyme A oxidase 3, pristanoyl (Acox3), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; A fatty acid beta-oxidation pathway in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed from oxidation pass directly to oxygen and produce H2O2, which is cleaved by peroxisomal catalases [goid 33540] [evidence IDA]; A fatty acid beta-oxidation pathway in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed from oxidation pass directly to oxygen and produce H2O2, which is cleaved by peroxisomal catalases [goid 33540] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IEA]; Catalysis of the reaction: acyl-CoA + O2 = trans-2,3-dehydroacyl-CoA + H2O2 [goid 3997] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: pristanoyl-CoA + O2 = trans-2,3-dehydropristanoyl-CoA + H2O2 [goid 16402] [evidence IDA]; Catalysis of the reaction: pristanoyl-CoA + O2 = trans-2,3-dehydropristanoyl-CoA + H2O2 [goid 16402] [evidence TAS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079226-S	ILMN_275019	RGD1308127	NM_001014248.1	NM_001014248.1		365493	62079226	NM_001014248.1	RGD1308127	NP_001014270.1	ILMN_1374308	0002810440	S	3189	TCTCAGAGTCAAAGCCTAGCACCACTTTGCTGGTACTGAAAGGCATGGGG	1	-	267131859-267131908	1q55	Rattus norvegicus similar to 2700078E11Rik protein (RGD1308127), mRNA.	Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity [goid 31461] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658994-I	ILMN_59825	PXN_PREDICTED	XM_573409.1	XM_573409.1		360820	62658994	XM_573409.1	Pxn_predicted	XP_573409.1	ILMN_1375289	0002900091	S	936	TGCAGGGCCTGGAACAGAGAGTGGATGTAGAGCGGCAGTGGGCAGCCGGC				12q16	PREDICTED: Rattus norvegicus paxillin (predicted) (Pxn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661137-S	ILMN_62889	LOC498457	XM_573716.1	XM_573716.1		498457	62661137	XM_573716.1	LOC498457	XP_573716.1	ILMN_1373569	0002260524	S	248	GAAAGCCATTGAGCACCCAACCTACACTAACCTTAACTGCCTCATCAGCC					PREDICTED: Rattus norvegicus similar to alpha-2-tubulin (LOC498457), mRNA.					
Rattus norvegicus	RefSeq	GI_62650853-S	ILMN_264285	GARNL1	XM_001079197.1	XM_001079197.1		56785	109479404	XM_001079197.1	Garnl1	XP_001079197.1	ILMN_1368996	0006380670	S	6403	GGCTTCATGGGAGGACTGCAGAAGAACAAAAGCACTGGACTGACCACTCC				6q23	PREDICTED: Rattus norvegicus GTPase activating RANGAP domain-like 1 (Garnl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981299-S	ILMN_286726	SLC22A1	NM_012697.1	NM_012697.1		24904	6981299	NM_012697.1	Slc22a1	NP_036829.1	ILMN_1353689	0000520047	S	1594	TGTGGCTTTGCCTGAGACTATTGAAGAAGCAGAGAACCTGGGGAGGAGGA	1	+	42376030-42376077:42378079-42378080	1q11	Rattus norvegicus solute carrier family 22 (organic cation transporter), member 1 (Slc22a1), mRNA.	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence TAS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence IDA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IDA]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence IDA]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence IDA]; The directed movement of norepinephrine into, out of, within or between cells. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 15874] [evidence IDA]; The directed movement of epinephrine into, out of, within or between cells [goid 48241] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of the transfer of dopamine from one side of the membrane to the other. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 5329] [evidence IDA]; Catalysis of the transfer of norepinephrine from one side of the membrane to the other. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 5333] [evidence IDA]; Catalysis of the transfer of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), from one side of the membrane to the other [goid 8504] [evidence IDA]; Catalysis of the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage [goid 15101] [evidence IDA]; Catalysis of the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage [goid 15101] [evidence ISS]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]	Roct1; Oct1; Orct1; MGC93570	Roct1; Oct1; Orct1; MGC93570
Rattus norvegicus	RefSeq	GI_13592000-S	ILMN_269896	MSX1	NM_031059.1	NM_031059.1		81710	13592000	NM_031059.1	Msx1	NP_112321.1	ILMN_1372537	0003710647	S	1559	CAGGGTGCATGCTGCTGGTTCACGAAGGTAGGTTGAAGAGACTTTCCCAG	14	+	78260946-78260995	14q21	Rattus norvegicus msh homeobox 1 (Msx1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence IEA]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649772-S	ILMN_69422	ATPBD1B_PREDICTED	XM_342932.3	XM_342932.3		362614	109475580	XM_342932.3	Atpbd1b_predicted	XP_342933.1	ILMN_1364567	0003850292	S	826	GGTCTCCTTCATCCCACTGAACATCCAGGACAAGGACAGCATCCAGCGAG	5	-	151491692-151491714:151493458-151493484	5q36	PREDICTED: Rattus norvegicus ATP binding domain 1 family, member B (predicted) (Atpbd1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653244-S	ILMN_66041	FOLR4_PREDICTED	XM_345898.3	XM_345898.3		367022	109483085	XM_345898.3	Folr4_predicted	XP_345899.3	ILMN_1358425	0005890373	S	2140	AGGAGATTCGTACCCAGCTGGCCGCAGCAGATGCTCGATTCTGGAGGGAC	8	-	11690654-11690703	8q11	PREDICTED: Rattus norvegicus folate receptor 4 (delta) (predicted) (Folr4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981179-S	ILMN_283406	MAOB	NM_013198.1	NM_013198.1		25750	6981179	NM_013198.1	Maob	NP_037330.1	ILMN_1371533	0003060286	S	2066	GGCCTACACAAAGCTACTGGTATTTGGGTGACTGGAACACAAGCTGATGC	X	+	17657529-17657578	Xq12	Rattus norvegicus monoamine oxidase B (Maob), nuclear gene encoding mitochondrial protein, mRNA.	The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence TAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42135] [evidence TAS]	Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence TAS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644366-S	ILMN_267656	NEUROG2_PREDICTED	XM_001076231.1	XM_001076231.1		295475	109467604	XM_001076231.1	Neurog2_predicted	XP_001076231.1	ILMN_1355478	0001940524	S	1735	TACAGCTGCACTTTATCACCCGCTAGCCCCGGGTCAGACGTGGACTACTG				2q42	PREDICTED: Rattus norvegicus neurogenin 2 (predicted) (Neurog2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655084	ILMN_292902	CPS1	NM_017072.1	NM_017072.1		497840	8393185	NM_017072.1	Cps1	NP_058768.1	ILMN_1649842	0005900504	S	4215	CACCCCAGTGGCTTGGCCATCTCAGGAAGGACAGAATCCCAGCCTCTCTT	9	+	66016408-66016437:66017810-66017829	9q32	Rattus norvegicus carbamoyl-phosphate synthetase 1, mitochondrial (Cps1), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]	A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IDA]; A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IDA]; A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IEA]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]; The regulation of the levels, transport, and metabolism of anions [goid 55081] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: 2 ATP + NH3 + CO2 + H2O = 2 ADP + phosphate + carbamoyl phosphate [goid 4087] [evidence IDA]; Catalysis of the reaction: 2 ATP + NH3 + CO2 + H2O = 2 ADP + phosphate + carbamoyl phosphate [goid 4087] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758059-S	ILMN_279155	GIPC1	NM_053341.1	NM_053341.1		83823	16758059	NM_053341.1	Gipc1	NP_445793.1	ILMN_1365243	0001850528	S	1264	CGGGTTCCCCACCTACCTCAATAGAGTAAGCGCATGGGGAGGGACCAACA	19	-	26165902-26165951	19q11	Rattus norvegicus GIPC PDZ domain containing family, member 1 (Gipc1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IEA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The regulated release of glutamate by a cell or group of cells. The glutamate is the most abundant excitatory neurotransmitter in the nervous system [goid 14047] [evidence ISS]; The regulated release of glutamate by a cell or group of cells. The glutamate is the most abundant excitatory neurotransmitter in the nervous system [goid 14047] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence ISS]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32435] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence ISS]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	Rgs19ip1; Gipc; Rgs19	Rgs19ip1; Gipc; Rgs19
Rattus norvegicus	RefSeq	GI_62642223-S	ILMN_54341	RGD1564216_PREDICTED	XM_220031.4	XM_220031.4		309499	109460048	XM_220031.4	RGD1564216_predicted	XP_220031.4	ILMN_1356239	0006860750	S	5909	AGTCCATGAAAGGCTGGTGGCCATGCTACGCAGACAAAGATGGCTCCCGC	1	-	242214448-242214497	1q53	PREDICTED: Rattus norvegicus similar to Myoferlin (Fer-1 like protein 3) (predicted) (RGD1564216_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658562-S	ILMN_276891	RGD1560288_PREDICTED	XR_009004.1	XR_009004.1		363882	109496707	XR_009004.1	RGD1560288_predicted		ILMN_1366246	0002470093	S	1171	AGGAAAATCCTGCTGAGCCCCAGAGATCCCGCCCACTCGGTGCCAGAGAT				12q11	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 19, Brigham & Womens Genetics 1357 expressed (predicted) (RGD1560288_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656036-S	ILMN_68058	LOC363588	XM_573084.1	XM_573084.1		363588	62656036	XM_573084.1	LOC363588	XP_573084.1	ILMN_1373059	0006520592	S	670	CTTATGGTGTCTGCCAGCATGAGTGGGTTCCTGAGCTCATGCAACAGATG				10q22	PREDICTED: Rattus norvegicus similar to tubulin, beta, 2 (LOC363588), mRNA.					
Rattus norvegicus	RefSeq	GI_62666637-S	ILMN_64492	LOC317394	XM_228802.3	XM_228802.3		317394	62666637	XM_228802.3	LOC317394	XP_228802.3	ILMN_1374055	0002360095	S	678	GTACATGGCTGGAAATTATGGGCAGAAGGACCCAGAAAAAGTGGCGCAGG				Xq13	PREDICTED: Rattus norvegicus similar to testis-specific farnesyl pyrophosphate synthetase (LOC317394), mRNA.					
Rattus norvegicus	RefSeq	GI_62659528-S	ILMN_55120	LOC498255	XM_573479.2	XM_573479.2		498255	109498037	XM_573479.2	LOC498255	XP_573479.2	ILMN_1361073	0005390121	S	860	GAGTTGATGGTGTGGTTCCAGAATTGATGGGGCTGGGAGCCAGGACAGCC	13	+	69994248-69994297	13q21	PREDICTED: Rattus norvegicus hypothetical protein LOC498255 (LOC498255), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640861-S	ILMN_263577	RKHD3_PREDICTED	XM_001068105.1	XM_001068105.1		308790	109462251	XM_001068105.1	Rkhd3_predicted	XP_001068105.1	ILMN_1364465	0000510746	S	3027	TGCCAACCGCATTTGTGAGAAGAGCGAGCCCGAGTGTCCCGTTTGCCACA				1q31	PREDICTED: Rattus norvegicus ring finger and KH domain containing 3 (predicted) (Rkhd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665886-S	ILMN_47961	LOC365553	XM_574741.1	XM_574741.1		365553	62665886	XM_574741.1	LOC365553	XP_574741.1	ILMN_1360973	0001230079	S	582	GGCATCCATGTGTCTGAGAGGGGAACCGTGCAGCAGGCTGATGAATGAGA				20p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (LOC365553), mRNA.					
Rattus norvegicus	RefSeq	GI_13929175-S	ILMN_281089	WFS1	NM_031823.1	NM_031823.1		83725	13929175	NM_031823.1	Wfs1	NP_114011.1	ILMN_1358741	0001660750	S	2575	AGCTGTCCCCTGCCCGGAGGCACGTAAAGATCGAACAGGACTGGCGTAGC	14	+	79403834-79403883	14q21	Rattus norvegicus Wolfram syndrome 1 homolog (human) (Wfs1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; Renal process involved in the maintenance of internal equilibrium of water in the body [goid 3091] [evidence IEA]; Renal process involved in the maintenance of internal equilibrium of water in the body [goid 3091] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings [goid 32469] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings [goid 32469] [evidence ISS]; The actions or reactions of an organism in response to an odor [goid 42048] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43069] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43069] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence IEA]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51247] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51247] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an ATPase, any enzyme that catalyzes the hydrolysis of ATP [goid 51117] [evidence IEA]; Interacting selectively with an ATPase, any enzyme that catalyzes the hydrolysis of ATP [goid 51117] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62638897-S	ILMN_49415	LOC499077	XM_574361.1	XM_574361.1		499077	62638897	XM_574361.1	LOC499077	XP_574361.1	ILMN_1360229	0002370433	S	1120	GGTCGCTGATGCCAAGTTTGGTGCTGCTCATAAAGGCAAGCATTGACTCG					PREDICTED: Rattus norvegicus similar to LRRGT00108 (LOC499077), mRNA.					
Rattus norvegicus	RefSeq	GI_62639369-S	ILMN_51796	LOC499127	XM_574420.1	XM_574420.1		499127	62639369	XM_574420.1	LOC499127	XP_574420.1	ILMN_1355338	0005220110	S	734	TCAGAGGTGCCCTTGCCAAGAAACCCACCAACCAAAAAACTGAACGTCCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930479M11 (LOC499127), mRNA.					
Rattus norvegicus	RefSeq	GI_62667148	ILMN_285784	RGD1565441_PREDICTED	XM_001062743.1	XM_001062743.1		317196	109512249	XM_001062743.1	RGD1565441_predicted	XP_001062743.1	ILMN_1650662	0000670142	S	2157	GGCACCTTTGAGTGTTCCTCGAGATGCTGTTGCAGTATGCCCCCTTGGAG				Xq32	PREDICTED: Rattus norvegicus similar to KIAA1687 protein (predicted) (RGD1565441_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649153-S	ILMN_60159	RGD1560884_PREDICTED	XM_578462.2	XM_578462.2		502957	109475055	XM_578462.2	RGD1560884_predicted	XP_578462.2	ILMN_1364438	0006110465	S	577	AGAATACGACCTGGCTGTCGTTAGGAAGGAGGCTGGTCTGGGAAGACGGG	5	+	102395307-102395356	5q31	PREDICTED: Rattus norvegicus similar to myosin tail domain-containing protein (predicted) (RGD1560884_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646688	ILMN_277814	TMEM60_PREDICTED	XM_001063081.1	XM_001063081.1		296761	109472974	XM_001063081.1	Tmem60_predicted	XP_001063081.1	ILMN_1650241	0004210286	S	306	CAATCTCTCCTATGTCTTCATTCCTTTATGGGCCTTACTGGCTGGCGCCC				4q11	PREDICTED: Rattus norvegicus transmembrane protein 60 (predicted) (Tmem60_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661492-S	ILMN_263361	CIDEB_PREDICTED	XM_001056289.1	XM_001056289.1		364388	109502415	XM_001056289.1	Cideb_predicted	XP_001056289.1	ILMN_1350030	0000460403	S	819	ACGTGAGGGGCATTAAAGGGCATCTTCAGGTCTGGGTCTGCGGTGTACCC				15p13	PREDICTED: Rattus norvegicus cell death-inducing DNA fragmentation factor, alpha subunit-like effector B (predicted) (Cideb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639359-S	ILMN_51231	RGD1308331_PREDICTED	XM_341829.3	XM_341829.3		361543	109458552	XM_341829.3	RGD1308331_predicted	XP_341830.3	ILMN_1364384	0005910673	S	8245	TCATGGTGGATGTGGGCATGTAATGGGGCAGGAGCCCTGCCTTCACCCCT	1	-	85614011-85614060	1q21	PREDICTED: Rattus norvegicus similar to Trithorax homolog 2 (Mixed lineage leukemia gene homolog 2 protein) (predicted) (RGD1308331_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665070-S	ILMN_52830	LOC502195	XM_577656.1	XM_577656.1		502195	62665070	XM_577656.1	LOC502195	XP_577656.1	ILMN_1366277	0000050180	S	437	GGTAGCCCTGACCCCGAACAGAGCCCAGAGAACCTTCCGACAAGGACTCA					PREDICTED: Rattus norvegicus similar to mitogen-activated protein kinase 4 (LOC502195), mRNA.					
Rattus norvegicus	RefSeq	GI_47577662-S	ILMN_274900	OLR558	NM_001000324.1	NM_001000324.1		295799	47577662	NM_001000324.1	Olr558	NP_001000324.1	ILMN_1352902	0003710577	S	393	TCTGGTTATGAACCCAACGAAGTGCACTCAGCTGGCAGTGGGCTCTTGGC	3	+	70995722-70995771	3q24	Rattus norvegicus olfactory receptor 558 (Olr558), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-70891702-70892622_ORF; Olr558	ratchr3-70891702-70892622_ORF; Olr558
Rattus norvegicus	RefSeq	GI_62660437-S	ILMN_47852	LOC305332	XM_223397.3	XM_223397.3		305332	62660437	XM_223397.3	LOC305332	XP_223397.3	ILMN_1353525	0000360520	S	7916	CCATAAAAGCTGGTGGAAGAAGAAAATGCCGGTGGGGGTGGCGGGAGAGG				14p11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC305332), mRNA.					
Rattus norvegicus	RefSeq	GI_56605651-S	ILMN_276830	SBDS	NM_001008289.1	NM_001008289.1		288615	56605651	NM_001008289.1	Sbds	NP_001008290.1	ILMN_1362809	0000520368	S	1124	GGGGGACGCCTGCTGGGAAGGAAGATGTGTTCTGCGTAATGAAGTCCAGG	12	+	27466200-27466249	12q13	Rattus norvegicus Shwachman-Bodian-Diamond syndrome homolog (human) (Sbds), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The proliferation of cells in the inner cell mass [goid 1833] [evidence ISS]; Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence ISS]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]; The cell cycle process whereby spindle integrity is maintained during M phase of mitosis [goid 43148] [evidence ISS]; The process whose specific outcome is the progression of the bone marrow over time, from its formation to the mature structure [goid 48539] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with ribosomal RNA [goid 19843] [evidence ISS]	MGC105922	MGC105922
Rattus norvegicus	RefSeq	GI_62653543-S	ILMN_288614	RGD1310357_PREDICTED	XM_001065047.1	XM_001065047.1		315579	109484555	XM_001065047.1	RGD1310357_predicted	XP_001065047.1	ILMN_1357039	0003120519	S	3775	GACAGCCTTTCTGCGGGGGCTCTCACCACACCTACTTCCCGTATTTAGGG				8q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810457I06 (predicted) (RGD1310357_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638730-S	ILMN_63797	LOC502262	XM_577723.1	XM_577723.1		502262	62638730	XM_577723.1	LOC502262	XP_577723.1	ILMN_1356672	0004280008	S	785	CACCACCAAAAGGAAACGGTTCCCACAAGAACTGGAGGACCTCCTTAGTA					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502262), mRNA.					
Rattus norvegicus	RefSeq	GI_47577538-S	ILMN_267993	OLR672	NM_001000350.1	NM_001000350.1		295878	47577538	NM_001000350.1	Olr672	NP_001000350.1	ILMN_1368705	0006860070	S	411	GAGGCTCTGTGAAGTTTTAGTTGTGGTATCCTGGGCAGGAGGTTTCTTGC	3	-	73233789-73233838	3q24	Rattus norvegicus olfactory receptor 672 (Olr672), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-73130621-73129707_ORF; Olr672	ratchr3-73130621-73129707_ORF; Olr672
Rattus norvegicus	RefSeq	GI_47577190-S	ILMN_277005	OLR354	NM_001001045.1	NM_001001045.1		405931	47577190	NM_001001045.1	Olr354	NP_001001045.1	ILMN_1374723	0000780471	S	207	GGTGGACTGTGTTTATGCTTCAGCAATCACTCCCAAGGTGATGGAAGGGT	1	+	216283997-216284046	1q43	Rattus norvegicus olfactory receptor 354 (Olr354), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr354	Olr354
Rattus norvegicus	RefSeq	GI_62658235-S	ILMN_297753	LOC680945	XM_001059596.1	XM_001059596.1		680945	109493662	XM_001059596.1	LOC680945	XP_001059596.1	ILMN_1358154	0002230050	S	718	TCACGATGAACTCTGAGCCGGATGGGAAGGGAGGGTGGCTGAGTGGGAAT	11	+	85879973-85879988:85879989-85880022	11q23	PREDICTED: Rattus norvegicus similar to stromal cell-derived factor 2-like 1 (LOC680945), mRNA.					
Rattus norvegicus	RefSeq	GI_13540664-S	ILMN_265707	BDKRB1	NM_030851.1	NM_030851.1		81509	13540664	NM_030851.1	Bdkrb1	NP_110478.1	ILMN_1350944	0005050138	S	1040	GACCTGGGCCTGCAGCTCGCCAACTTCTTTGCCTTTGTCAACAGCTGCTT	6	+	129762273-129762322	6q32	Rattus norvegicus bradykinin receptor B1 (Bdkrb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of leukocyte migration [goid 2687] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IDA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51281] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IDA]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence ISS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IPI]	b1bkr; BKR; Bdkrb	b1bkr; BKR; Bdkrb
Rattus norvegicus	RefSeq	GI_27753973-S	ILMN_285021	LAT2	NM_173840.1	NM_173840.1		317676	27753973	NM_173840.1	Lat2	NP_776212.1	ILMN_1354698	0000670239	S	192	GCCGGTGCGGACAGGACTCCAGATGGACGCAGCCTCAAACAAGTCATTTG	12	+	23177158-23177207	12q12	Rattus norvegicus linker for activation of T cells family, member 2 (Lat2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; The regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a mast cell [goid 43303] [evidence IEA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IEA]	Wbscr5	Wbscr5
Rattus norvegicus	RefSeq	GI_58865779-A	ILMN_263772	ZBTB17	NM_001012105.1	NM_001012105.1		313666	58865779	NM_001012105.1	Zbtb17	NP_001012105.1	ILMN_1376446	0002510204	S	2604	AGCCCACACTGGCAGAAACTCCACCCACAGCTCCTGATTGCCTACCACCT	5	+	160358895-160358944	5q36	Rattus norvegicus zinc finger and BTB domain containing 17 (Zbtb17), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation [goid 7398] [evidence IEA]; The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation [goid 7398] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zfp100	Zfp100
Rattus norvegicus	RefSeq	GI_12018301-S	ILMN_262537	SLC7A2	NM_022619.1	NM_022619.1		64554	12018301	NM_022619.1	Slc7a2	NP_072141.1	ILMN_1351005	0003850692	S	1803	CGCCTATGGCATTAGACACAGCTTGGAGGGTAACCCCAGGGACGAAGAAG	16	-	54752592-54752641	16q12.1	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 (Slc7a2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IC ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The synthesis or release of nitric oxide following a stimulus during an acute inflammatory response, resulting in an increase in its intracellular or extracellular levels [goid 2537] [evidence IEA]; The synthesis or release of nitric oxide following a stimulus during an acute inflammatory response, resulting in an increase in its intracellular or extracellular levels [goid 2537] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence IEA]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence ISS]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IEA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IDA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IDA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence ISS]; The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of, within or between cells [goid 15819] [evidence IEA]; The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of, within or between cells [goid 15819] [evidence ISS]; The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of, within or between cells [goid 15822] [evidence IEA]; The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of, within or between cells [goid 15822] [evidence ISS]; A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42116] [evidence IEA]; A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42116] [evidence ISS]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence IEA]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Catalysis of the transfer of L-ornithine from one side of a membrane to the other. L-ornithine is 2,5-diaminopentanoic acid [goid 64] [evidence IEA]; Catalysis of the transfer of L-ornithine from one side of a membrane to the other. L-ornithine is 2,5-diaminopentanoic acid [goid 64] [evidence ISS]; Catalysis of the transfer of arginine from one side of a membrane to the other. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations [goid 5289] [evidence IEA]; Catalysis of the transfer of arginine from one side of a membrane to the other. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations [goid 5289] [evidence ISS]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]; Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence ISS]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence TAS]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence IDA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence ISS]; Catalysis of the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid [goid 15189] [evidence IEA]; Catalysis of the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid [goid 15189] [evidence ISS]	RCAT2; Cat2	RCAT2; Cat2
Rattus norvegicus	RefSeq	GI_62659512-S	ILMN_51561	LOC364015	XM_577274.1	XM_577274.1		364015	62659512	XM_577274.1	LOC364015	XP_577274.1	ILMN_1375213	0002680551	S	1732	ACCGCAACAGGGTGGTGGACGTCATGGCCTCTAAGGAGCAAGAAACCCTG					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC364015), mRNA.					
Rattus norvegicus	RefSeq	GI_34856268-S	ILMN_265355	POLE4_PREDICTED	XM_001071977.1	XM_001071977.1		362385	109473760	XM_001071977.1	Pole4_predicted	XP_001071977.1	ILMN_1369571	0004760195	S	743	CTGGGAACCCGTGTGGTCAGGCACAGACTTTCCTCATCTTTCAAGCAACC				4q34	PREDICTED: Rattus norvegicus polymerase (DNA-directed), epsilon 4 (p12 subunit) (predicted) (Pole4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659681-S	ILMN_264333	RGD1563679_PREDICTED	XR_009054.1	XR_009054.1		304116	109498989	XR_009054.1	RGD1563679_predicted		ILMN_1355120	0003940575	S	635	AAATGAGATTTGCCACCACTGGGGAGTCAATGTCCTGGGTCCTAAGCCTG				13q23	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1563679_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644894-S	ILMN_54347	RGD1306074_PREDICTED	XM_231124.3	XM_231124.3		296601	109467948	XM_231124.3	RGD1306074_predicted	XP_231124.3	ILMN_1353672	0004210577	S	317	TGCGGACTTACCATGACCACTGGGGCTACGGGGTGTACTCTGGTCCCATA	3	-	5961362-5961411	3p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110002H13 (predicted) (RGD1306074_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660317-S	ILMN_279828	LOC686564	XM_001074761.1	XM_001074761.1		686564	109500503	XM_001074761.1	LOC686564	XP_001074761.1	ILMN_1651063	0001260215	S	254	CCCACTGACCACCGAGTCGGCTATGAAGAAAATAGAGGACAACAACACGC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC686564), mRNA.					
Rattus norvegicus	RefSeq	GI_62658508-S	ILMN_263030	RGD1565146_PREDICTED	XM_001064900.1	XM_001064900.1		498150	109496529	XM_001064900.1	RGD1565146_predicted	XP_001064900.1	ILMN_1367642	0006400504	S	2141	CCCGGTGGCCCAAAAAGCCTGTGACCTGCTCCTCTTCTTGAGGGACAAGA				12q11	PREDICTED: Rattus norvegicus similar to hypothetical gene supported by AF226663 (predicted) (RGD1565146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527352-S	ILMN_286332	TOR3A	NM_001009683.1	NM_001009683.1		304884	57527352	NM_001009683.1	Tor3a	NP_001009683.1	ILMN_1354422	0002690041	S	1522	AGGTTTGGCTGGCTCTCCGGGGTAGGGAGATGGGCAGCTTCTGCATGTGA	13	-	71849840-71849889	13q22	Rattus norvegicus torsin family 3, member A (Tor3a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC105766	MGC105766
Rattus norvegicus	RefSeq	Rn.2164	ILMN_286332	TOR3A	NM_001009683.1	NM_001009683.1		304884	57527352	NM_001009683.1	Tor3a	NP_001009683.1	ILMN_1530388	0007000575	S	1751	CTGCAGACTGAAAACTTTGAGGCCTTGTCATGTGTGATTAAATGTATTTT	13	-	71849611-71849660	13q22	Rattus norvegicus torsin family 3, member A (Tor3a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC105766	MGC105766
Rattus norvegicus	RefSeq	GI_62659356-S	ILMN_275918	GPR37L1	XM_001062802.1	XM_001062802.1		252939	109498669	XM_001062802.1	Gpr37l1	XP_001062802.1	ILMN_1359976	0002260315	S	2065	TAGCTCCCTATCCTGGACCAGGCACTTCTAGGGGGGCTCACCTAACCAAG				13q13	PREDICTED: Rattus norvegicus G protein-coupled receptor 37-like 1 (Gpr37l1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981311-S	ILMN_285005	OTC	NM_013078.1	NM_013078.1		25611	6981311	NM_013078.1	Otc	NP_037210.1	ILMN_1355192	0001780300	S	1123	GCTGACAGACTACTCACCTGTGCTCCAGAAGCCAAAGTTCTGATGCCTGC	X	-	24609488-24609495:24609496-24609537	Xq13	Rattus norvegicus ornithine carbamoyltransferase (Otc), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; An enzyme complex that catalyzes the transfer of a carbamoyl to ornithine, forming citrulline [goid 9348] [evidence IEA]	A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IDA]; A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IDA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis [goid 6591] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IDA]; The regulation of the levels, transport, and metabolism of anions [goid 55081] [evidence IDA]	Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline [goid 4585] [evidence IEA]; Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline [goid 4585] [evidence IDA]; Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline [goid 4585] [evidence IMP]; Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline [goid 4585] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IMP]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with phosphate [goid 42301] [evidence IMP]	MGC108742	MGC108742
Rattus norvegicus	RefSeq	GI_47576482	ILMN_270955	OLR1609	NM_001000973.1	NM_001000973.1		405328	47576482	NM_001000973.1	Olr1609	NP_001000973.1	ILMN_1650804	0001170706	S	633	TCTGCTCTTGCTCACCTCCTACATTGTGGTGCTTGTCACCATCAGGGGCC	15	-	25958445-25958494	15p14	Rattus norvegicus olfactory receptor 1609 (Olr1609), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1609	Olr1609
Rattus norvegicus	RefSeq	GI_47575862-S	ILMN_302254	DECR2	NM_171996.2	NM_171996.2		64461	47575862	NM_171996.2	Decr2	NP_741993.1	ILMN_1352032	0007040372	S	1075	GCGCTTAAGAAAGTTGTACTGAGGAGGCCGTGTTCTTCATGGGGAAGGCT	10	-	15350918-15350967	10q12	Rattus norvegicus 2,4-dienoyl CoA reductase 2, peroxisomal (Decr2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+ [goid 8670] [evidence IDA]; Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+ [goid 8670] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	putativeperoxisomal24-dienoyl-CoAreductase; Dcrakl	putativeperoxisomal24-dienoyl-CoAreductase; Dcrakl
Rattus norvegicus	RefSeq	GI_62718738-S	ILMN_57122	LOC304237	XM_239589.3	XM_239589.3		304237	62718738	XM_239589.3	LOC304237	XP_239589.3	ILMN_1365734	0002260368	S	739	CACTGGTGCCTCAGAGAGAGGATTGACAGTGAACAACTCATTGAATGGAA					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC304237), mRNA.					
Rattus norvegicus	RefSeq	GI_47578022-S	ILMN_274110	OLR1069	NM_001000522.1	NM_001000522.1		362821	47578022	NM_001000522.1	Olr1069	NP_001000522.1	ILMN_1365632	0005420497	S	209	CCTACTTAGATCTCTGCTACTCTACAGTCATTGCACCCAAAACCTTAGCC	7	-	8295154-8295203	7q11	Rattus norvegicus olfactory receptor 1069 (Olr1069), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-8295412-8294468_ORF; Olr1069	ratchr7-8295412-8294468_ORF; Olr1069
Rattus norvegicus	RefSeq	GI_54262165-S	ILMN_301372	BCL2L2	NM_021850.2	NM_021850.2		60434	54262165	NM_021850.2	Bcl2l2	NP_068622.1	ILMN_1372609	0000050500	S	3226	GCTTAGGCCAAGGCAAGAGCGGAAGTGGGGCAAGTCAGTCCTGCAGTTGT	15	+	32987723-32987772	15p13	Rattus norvegicus Bcl2-like 2 (Bcl2l2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules [goid 60011] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	BCL-WS; Bclw; BCL-WEL; MGC91704; BCL-W	BCL-WS; Bclw; BCL-WEL; MGC91704; BCL-W
Rattus norvegicus	RefSeq	GI_62646595-S	ILMN_48784	LOC502706	XM_578206.1	XM_578206.1		502706	62646595	XM_578206.1	LOC502706	XP_578206.1	ILMN_1350212	0006200692	S	1344	CGCCTAGCACGGCTGCTTCGACTCAGACAGCTTGTTGTTGGTGTGTGTTG					PREDICTED: Rattus norvegicus similar to extended extralong alpha s XXLb1 (LOC502706), mRNA.					
Rattus norvegicus	RefSeq	GI_62655472-S	ILMN_285822	LOC501194	NM_001025775.1	NM_001025775.1		501194	71043929	NM_001025775.1	LOC501194	NP_001020946.1	ILMN_1372684	0002680093	S	1222	CGGGAGCTTGCGCCACAGTTTCATATCCCCTGGTCCATACCGTTAGAGGC	9	+	97137958-97137995:97137996-97138007	9q36	Rattus norvegicus similar to hypothetical protein D330021B20 (LOC501194), mRNA.			Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]	MGC114398	MGC114398
Rattus norvegicus	RefSeq	GI_62655959-S	ILMN_64023	RGD1308329_PREDICTED	XM_220308.4	XM_220308.4		303039	109487964	XM_220308.4	RGD1308329_predicted	XP_220308.4	ILMN_1371299	0006840458	S	3487	ATTTATGAGGCATTATGTGAAGGTACCGAGTCACAGGTCCCCGAGCGCGC	10	-	20751169-20751218	10q12	PREDICTED: Rattus norvegicus similar to KIAA0869 protein (predicted) (RGD1308329_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639762-S	ILMN_293660	SULT2B1	NM_001039665.1	NM_001039665.1		292915	89145410	NM_001039665.1	Sult2b1	NP_001034754.1	ILMN_1363274	0000520528	S	874	AGAGGCCCTGAGCTCTGTGGTGGCCCATTCAGCTTTTGCTGCCATGAAGG	1	-	96199184-96199233	1q22	Rattus norvegicus sulfotransferase family, cytosolic, 2B, member 1 (Sult2b1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds [goid 103] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenolic steroid = adenosine 3',5'-bisphosphate + steroid O-sulfate [goid 50294] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + an alcohol = adenosine 3',5'-bisphosphate + an alkyl sulfate [goid 4027] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.100005	ILMN_293660	SULT2B1	NM_001039665.1	NM_001039665.1		292915	89145410	NM_001039665.1	Sult2b1	NP_001034754.1	ILMN_1530418	0000670463	S	639	TCTATTATTACTCTAAGATTGCTGTACAATTAAAGGACCCTGGTACACCT	1	-	96202986-96203035	1q22	Rattus norvegicus sulfotransferase family, cytosolic, 2B, member 1 (Sult2b1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds [goid 103] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenolic steroid = adenosine 3',5'-bisphosphate + steroid O-sulfate [goid 50294] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + an alcohol = adenosine 3',5'-bisphosphate + an alkyl sulfate [goid 4027] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660409-S	ILMN_284805	NPAL1_PREDICTED	XM_001077025.1	XM_001077025.1		289594	109500557	XM_001077025.1	Npal1_predicted	XP_001077025.1	ILMN_1356088	0005420717	S	1055	CATGTTCCGCCATCTTGTTCCAGGAGTGGTATGGCATGAGAGCTGGGGAT				14p11	PREDICTED: Rattus norvegicus NIPA-like domain containing 1 (predicted) (Npal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664826-S	ILMN_262737	RGD1308847_PREDICTED	XM_001058823.1	XM_001058823.1		291860	109508384	XM_001058823.1	RGD1308847_predicted	XP_001058823.1	ILMN_1360701	0000670494	S	2444	CCACACAGGTCCTTACTACAAACAGCACGAAGACCCTGACGGACGGTGCA					PREDICTED: Rattus norvegicus similar to SPla/RYanodine receptor SPRY (1J970) (predicted) (RGD1308847_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079018-S	ILMN_275828	UFSP2	NM_001014142.1	NM_001014142.1		361151	62079018	NM_001014142.1	Ufsp2	NP_001014164.1	ILMN_1370603	0006380309	S	1017	CACAGGGAAATCCAGCAGGCTCTAGTTGATGCCGGTGACAAACCAGCAAC	16	-	49557557-49557589:49557794-49557810	16q11	Rattus norvegicus UFM1-specific peptidase 2 (Ufsp2), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A [goid 16790] [evidence IEA]; Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A [goid 16790] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_18543346-S	ILMN_264098	GALNT10	NM_130742.1	NM_130742.1		170501	18543346	NM_130742.1	Galnt10	NP_570098.1	ILMN_1355139	0006620044	S	1634	AGCTGTGGAAATACCGCAAGGACAAGACCCTGTACCACCCTGTTAGCGGC	10	+	43380907-43380926:43381426-43381455	10q22	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) (Galnt10), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence ISS]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	Galnt9	Galnt9
Rattus norvegicus	RefSeq	GI_62654265-S	ILMN_48557	SEMA3F_PREDICTED	XM_236623.4	XM_236623.4		315996	109483874	XM_236623.4	Sema3f_predicted	XP_236623.3	ILMN_1352572	0006180414	S	3170	GGTGATGGGTGTAAATAGCTCTGGTGGCAGTGGCGTAGATGGTTGGGGGG	8	-	112932189-112932238	8q32	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F (predicted) (Sema3f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642254-S	ILMN_55742	RGD1305166_PREDICTED	XM_220007.4	XM_220007.4		309486	109460109	XM_220007.4	RGD1305166_predicted	XP_220007.4	ILMN_1348963	0004010059	S	1681	TGGACCTTACTCAGAAGCCAGAACCGCCAAGGGATCAACCTAGACCAGAC	1	-	245726155-245726204	1q54	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930521E07 (predicted) (RGD1305166_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648342-S	ILMN_64179	RGD1560924_PREDICTED	XM_575725.2	XM_575725.2		500367	109472847	XM_575725.2	RGD1560924_predicted	XP_575725.2	ILMN_1368811	0006420050	S	2008	CCGGGGTCTGCTTTGAACGGGTCGAGGTCAGTAGCTAAGATCACAGTAGC	4	+	184708459-184708508	4q44	PREDICTED: Rattus norvegicus similar to C230080I20Rik protein (predicted) (RGD1560924_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40786488-S	ILMN_283873	GEFT	NM_199395.1	NM_199395.1		314904	40786488	NM_199395.1	Geft	NP_955427.1	ILMN_1356932	0000520551	S	1849	TCTTCCCGGTGTTTGGAGGATGGGAGAGCCTGGGAGAGAGATCAGTGTGG	7	-	67137658-67137707	7q22	Rattus norvegicus RhoA/RAC/CDC42 exchange factor (Geft), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]	MGC72605	MGC72605
Rattus norvegicus	RefSeq	GI_33413432-I	ILMN_291126	SQSTM1	NM_181550.1	NM_181550.1		113894	33413432	NM_181550.1	Sqstm1	NP_853528.1	ILMN_1375496	0006650592	I	683	CTGGCTTTAAGTGTCATAAGTAGCCAGCTTGTTCAGGTGGACCCTTGGCC	10	-	35759385-35759412:35759413-35759434	10q22	Rattus norvegicus sequestosome 1 (Sqstm1), transcript variant 2, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]	Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9177193] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Osi; ZIP; ZIP3	Osi; ZIP; ZIP3
Rattus norvegicus	RefSeq	GI_61557253-S	ILMN_302706	POLD4	NM_001013195.1	NM_001013195.1		361698	61557253	NM_001013195.1	Pold4	NP_001013213.1	ILMN_1358257	0001170156	S	734	GCCAGATGTAGTCAGGGCCCACCTAGGGCATCTTGCTGAGAACACAACTG	1	+	206817023-206817072	1q42	Rattus norvegicus polymerase (DNA-directed), delta 4 (Pold4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IEA]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659474-S	ILMN_49715	LOC498250	XM_579803.1	XM_579803.1		498250	62659474	XM_579803.1	LOC498250	XP_579803.1	ILMN_1352129	0002060110	S	1118	ACAGCAGTGGCTACCGGTGCTAAGAACAGACACACTGTACAAAGCCAGGC					PREDICTED: Rattus norvegicus LOC498250 (LOC498250), mRNA.					
Rattus norvegicus	RefSeq	GI_13027429-S	ILMN_290962	WDR7	NM_023975.1	NM_023975.1		66031	13027429	NM_023975.1	Wdr7	NP_076465.1	ILMN_1351953	0000070292	S	4385	GGTTGGCCCGGCTCATCTGGACTTCCAACCGGAATGTTATCCTCATGGCC	18	+	60143058-60143107	18q12.1	Rattus norvegicus WD repeat domain 7 (Wdr7), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]	Wd7; Trag	Wd7; Trag
Rattus norvegicus	RefSeq	GI_62644076-S	ILMN_275830	TBX15_PREDICTED	XM_001062167.1	XM_001062167.1		295315	109467255	XM_001062167.1	Tbx15_predicted	XP_001062167.1	ILMN_1367546	0002370341	S	3468	TTTGCCCTTATGCACGGAACTGTTTCTGAGTGCCAAGCACAGAAAGCCGC				2q34	PREDICTED: Rattus norvegicus T-box 15 (predicted) (Tbx15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929181-S	ILMN_275252	VAMP8	NM_031827.1	NM_031827.1		83730	13929181	NM_031827.1	Vamp8	NP_114015.1	ILMN_1360453	0006590154	S	74	TTATGACCCAGAATGTGGAGCGGATCTTGGCCCGAGGGGAGAACCTGGAC	4	-	105694783-105694832	4q33	Rattus norvegicus vesicle-associated membrane protein 8 (Vamp8), mRNA.	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865935-A	ILMN_270766	RGD1311316	NM_001012182.1	NM_001012182.1		362007	58865935	NM_001012182.1	RGD1311316	NP_001012182.1	ILMN_1376964	0004670309	S	2157	GCAGAGCAGGCTTTCGGTGCCCTGTGTCATGAACTCTGCCTGGTATTGAT	2	+	198233745-198233794	2q34	Rattus norvegicus similar to RIKEN cDNA 5730470L24 (RGD1311316), mRNA.				MGC105932	MGC105932
Rattus norvegicus	RefSeq	GI_47576854-S	ILMN_264455	OLR210	NM_001000195.1	NM_001000195.1		293357	47576854	NM_001000195.1	Olr210	NP_001000195.1	ILMN_1361852	0005550288	S	719	CCTGTTCCTCCCACTTGACAGTGGTTGGGATGTTTTATGGGGGTGCCACT	1	+	163983558-163983607	1q33	Rattus norvegicus olfactory receptor 210 (Olr210), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr210	Olr210
Rattus norvegicus	RefSeq	GI_12083610-S	ILMN_278304	H2AFZ	NM_022674.1	NM_022674.1		58940	12083610	NM_022674.1	H2afz	NP_073165.1	ILMN_1351035	0004280500	S	470	CTCTTAACAGCTGTCCAGTGTTGGTGATTCCAGTGGACTGTATCTCTGTG	2	+	235354798-235354847	2q44	Rattus norvegicus H2A histone family, member Z (H2afz), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC105426; MGC72814	MGC105426; MGC72814
Rattus norvegicus	RefSeq	GI_62665177-S	ILMN_294914	RANBP10_PREDICTED	XM_001073477.1	XM_001073477.1		361396	109508689	XM_001073477.1	Ranbp10_predicted	XP_001073477.1	ILMN_1359594	0000110603	S	4886	CTGGACAGCAGAGCCCGACTTCACCACCAACCACTGGCACTTGGACCTGT				19q12	PREDICTED: Rattus norvegicus RAN binding protein 10 (predicted) (Ranbp10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647814-S	ILMN_61696	LOC502859	XM_578359.1	XM_578359.1		502859	62647814	XM_578359.1	LOC502859	XP_578359.1	ILMN_1355766	0000380047	S	2787	GACCTGGACGGCCGAATAGTCTGCTTCTTGCTCACGCCCACTTCCGGCGT				4q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933428M03 (LOC502859), mRNA.		The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]	Catalysis of the reaction: DNA (containing 6-O-methylguanine) + (protein)-L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L-cysteine [goid 3908] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948385-S	ILMN_288124	DHPS	NM_001004207.1	NM_001004207.1		288923	51948385	NM_001004207.1	Dhps	NP_001004207.1	ILMN_1355922	0000460121	S	1164	GCTGAGAAGAATGAGGACTGAGCAGATGGGTAAAGACGGAGGCTTCTGCC	19	-	24738831-24738860:24738861-24738880	19q11	Rattus norvegicus deoxyhypusine synthase (Dhps), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The posttranslational modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine [goid 8612] [evidence IEA]; The posttranslational modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine [goid 8612] [evidence ISS]; The chemical reactions resulting in the breakdown of spermidine to form deoxyhypusine by the enzyme [eIF-5A]-deoxyhypusine synthase. The reaction occurs in four steps: 1. spermidine + NAD+ = dehydrospermidine + NADH + H+; 2. dehydrospermidine + [enzyme]-lysine = 1,3-diaminopropane + [enzyme]-lysine-N6=CH(CH2)3NH2; 3. [enzyme]-lysine-N6=CH(CH2)3NH2 = [eIF-5A]-lysine-N6=CH(CH2)3NH2; 4. [eIF-5A]-lysine-N6=CH(CH2)3NH2 + NADH + H+ = [eIF-5A]-deoxyhypusine + NAD+ [goid 50983] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: eIF5A-precursor]-lysine + spermidine = [eIF5A-precursor]-deoxyhypusine + propane-1,3-diamine. Four sub-reactions have been identified,in which the intermediates remain tightly associated with the enzyme: spermidine + NAD+ = dehydrospermidine + NADH; dehydrospermidine + [enzyme]-lysine = N-(4-aminobutylidene)-[enzyme]-lysine + propane-1,3-diamine; N-(4-aminobutylidene)-[enzyme]-lysine + [eIF5A-precursor]-lysine = N-(4-aminobutylidene)-[eIF5A-precursor]-lysine + [enzyme]-lysine; N-(4-aminobutylidene)-[eIF5A-precursor]-lysine + NADH + H+ = [eIF5A-precursor]-deoxyhypusine + NAD+ [goid 34038] [evidence IEA]; Catalysis of the reaction: eIF5A-precursor]-lysine + spermidine = [eIF5A-precursor]-deoxyhypusine + propane-1,3-diamine. Four sub-reactions have been identified,in which the intermediates remain tightly associated with the enzyme: spermidine + NAD+ = dehydrospermidine + NADH; dehydrospermidine + [enzyme]-lysine = N-(4-aminobutylidene)-[enzyme]-lysine + propane-1,3-diamine; N-(4-aminobutylidene)-[enzyme]-lysine + [eIF5A-precursor]-lysine = N-(4-aminobutylidene)-[eIF5A-precursor]-lysine + [enzyme]-lysine; N-(4-aminobutylidene)-[eIF5A-precursor]-lysine + NADH + H+ = [eIF5A-precursor]-deoxyhypusine + NAD+ [goid 34038] [evidence ISS]	MGC94237	MGC94237
Rattus norvegicus	RefSeq	GI_62642671-S	ILMN_55438	RGD1561229_PREDICTED	XM_577973.2	XM_577973.2		502492	109464170	XM_577973.2	RGD1561229_predicted	XP_577973.2	ILMN_1356777	0004120136	S	169	CCTGCAGGCGTGTGTAACCAATTGAACCATATTCATGATGGAGAACGGGG	2	+	771671-771720	2q11	PREDICTED: Rattus norvegicus similar to Ac1147 (predicted) (RGD1561229_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652967-S	ILMN_50110	LOC300117	XM_235545.3	XM_235545.3		300117	62652967	XM_235545.3	LOC300117	XP_235545.3	ILMN_1350594	0003360136	S	4342	TCATGCACTGCCAGGCTAAACAGCCCACCACGCATGCTCATTGCAGCCAG				7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein BC012187 (predicted) (LOC300117), mRNA.					
Rattus norvegicus	RefSeq	GI_62645153-S	ILMN_67140	LOC499802	XM_575142.1	XM_575142.1		499802	62645153	XM_575142.1	LOC499802	XP_575142.1	ILMN_1369895	0005080301	S	307	GTTAGACCGCAGGGAAACAAATAACCCTAATAAAAAATGGGGTTCAGAGC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499802), mRNA.					
Rattus norvegicus	RefSeq	GI_62656743-S	ILMN_263181	SUPT4H2_PREDICTED	XM_001081172.1	XM_001081172.1		287608	109491599	XM_001081172.1	Supt4h2_predicted	XP_001081172.1	ILMN_1364290	0006550025	S	451	AAAGACTCCTTGCCCTCCAGCTCAGGATCAGCAGACCCCGTGAAGGCAGC				10q26	PREDICTED: Rattus norvegicus suppressor of Ty 4 homolog 2 (S. cerevisiae) (predicted) (Supt4h2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786203-S	ILMN_294863	VDAC3	NM_031355.1	NM_031355.1		83532	13786203	NM_031355.1	Vdac3	NP_112645.1	ILMN_1367494	0003870309	S	1065	TCTTCCCACACCGAAGTCTAGAGATTACAGATCCATCCAGTGGGAGGTCC	16	+	73939106-73939155	16q12.5	Rattus norvegicus voltage-dependent anion channel 3 (Vdac3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence TAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Vesicular particles formed from disrupted endoplasmic reticulum membranes and studded with ribosomes on the outside [goid 19718] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion [goid 8308] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662096	ILMN_63403	LOC498566	XM_229664.3	XM_229664.3		498566	62662096	XM_229664.3	LOC498566	XP_229664.3	ILMN_1650226	0000360292	S	430	TTTCAGGAGATCCAGAAGGAAATTAACTTCTATCGATCTGGGAGCTGCCT					PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC498566), mRNA.					
Rattus norvegicus	RefSeq	GI_62652509-I	ILMN_49779	NDRG1_PREDICTED	XM_576281.1	XM_576281.1		299923	62652509	XM_576281.1	Ndrg1_predicted	XP_576281.1	ILMN_1376230	0006100164	S	24	TGTGCCACTTGGCTACAGAGGGAGCCTAAGAGCCGCACACAAGCCTTGAG				7q33	PREDICTED: Rattus norvegicus N-myc downstream regulated gene 1 (predicted) (Ndrg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34851922-S	ILMN_269954	CHST4_PREDICTED	XM_001077198.1	XM_001077198.1		307838	109508873	XM_001077198.1	Chst4_predicted	XP_001077198.1	ILMN_1372670	0000540427	S	939	CATGGGTCAGCATGCCTTCCACACTAATGCCAGGGACGCCCTCAACGTCT				19q12	PREDICTED: Rattus norvegicus carbohydrate (chondroitin 6/keratan) sulfotransferase 4 (predicted) (Chst4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667213-S	ILMN_289333	RGD1561151_PREDICTED	XM_001066024.1	XM_001066024.1		302774	109512282	XM_001066024.1	RGD1561151_predicted	XP_001066024.1	ILMN_1357636	0000840687	S	1406	CTGCTGCTGTTGGTGACTCTGAATCTGTAACCCTGCCCACTGGACCACAG				Xq33	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932411N23 (predicted) (RGD1561151_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090557-S	ILMN_284468	GOLGA7	NM_001007731.1	NM_001007731.1		361171	56090557	NM_001007731.1	Golga7	NP_001007732.1	ILMN_1369835	0002340100	S	1403	CCCCCGTGTGGTGAGCAGGCACCCTAAGCACCTGACTCTAGTTTTGTTAC	16	+	73240174-73240223	16q12.5	Rattus norvegicus golgi autoantigen, golgin subfamily a, 7 (Golga7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			MGC93825	MGC93825
Rattus norvegicus	RefSeq	GI_16930820-S	ILMN_262707	NR0B2	NM_057133.1	NM_057133.1		117274	16930820	NM_057133.1	Nr0b2	NP_476474.1	ILMN_1355189	0006650239	S	813	GGTGACCTGTAGAATGGGGTCCGGTGCCTCCAAAGGGGAGCCTGAAAGGC	5	-	151524933-151524978:151524979-151524982	5q36	Rattus norvegicus nuclear receptor subfamily 0, group B, member 2 (Nr0b2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	Shp	Shp
Rattus norvegicus	RefSeq	GI_62663690-S	ILMN_296296	RGD1562407_PREDICTED	XM_001064372.1	XM_001064372.1		307029	109506016	XM_001064372.1	RGD1562407_predicted	XP_001064372.1	ILMN_1364527	0004060390	S	661	AGGGAAGGTGGGACCAGTTACTCTCCACAAGAAAACTCACACAACCACAG					PREDICTED: Rattus norvegicus similar to WAC (predicted) (RGD1562407_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865973	ILMN_291679	CADM1	NM_001012201.1	NM_001012201.1		363058	58865973	NM_001012201.1	Cadm1	NP_001012201.1	ILMN_1530407	0000060215	S	1715	AGACTGGGAAGGCTTGGGATTTGCAATGTAAAAACAAAGACAAAAAATGT	8	+	51108900-51108949	8q23	Rattus norvegicus cell adhesion molecule 1 (Cadm1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IMP]; The directed killing of a target cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors [goid 1913] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The process by which a cell in a multicellular organism interprets its surroundings [goid 8037] [evidence ISS]; The process by which a cell in a multicellular organism interprets its surroundings [goid 8037] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]; The process of causing a cell to become susceptible to natural killer cell mediated cytotoxicity [goid 42271] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal [goid 51606] [evidence ISS]; The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal [goid 51606] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	sgigsf	sgigsf
Rattus norvegicus	RefSeq	GI_62653618-A	ILMN_291679	CADM1	NM_001012201.1	NM_001012201.1		363058	58865973	NM_001012201.1	Cadm1	NP_001012201.1	ILMN_1376587	0001740092	S	1496	GCCAAAGGAGCCGATGACGCAGCAGACGCAGACACAGCTATAATCAATGC	8	+	51108681-51108730	8q23	Rattus norvegicus cell adhesion molecule 1 (Cadm1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IMP]; The directed killing of a target cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors [goid 1913] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The process by which a cell in a multicellular organism interprets its surroundings [goid 8037] [evidence ISS]; The process by which a cell in a multicellular organism interprets its surroundings [goid 8037] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]; The process of causing a cell to become susceptible to natural killer cell mediated cytotoxicity [goid 42271] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal [goid 51606] [evidence ISS]; The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal [goid 51606] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	sgigsf	sgigsf
Rattus norvegicus	RefSeq	GI_62651880-S	ILMN_64280	RGD1562092_PREDICTED	XM_576205.2	XM_576205.2		500818	109480351	XM_576205.2	RGD1562092_predicted	XP_576205.2	ILMN_1367180	0005220017	S	2507	CATGTACACCCCTCTGACCACGCGCAGGAATTCTGAGTACGAGCACATGC	7	-	20977129-20977178	7q13	PREDICTED: Rattus norvegicus similar to regulatory factor X 4 variant (predicted) (RGD1562092_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647287-S	ILMN_59708	LOC362363	XM_342688.2	XM_342688.2		362363	62647287	XM_342688.2	LOC362363	XP_342689.2	ILMN_1367056	0003610072	S	2603	GGGCCTCATGAACAAGTGCCCTCTGAATGTGAACGGCATAAAGTACCACG					PREDICTED: Rattus norvegicus similar to CG12054-PA (predicted) (LOC362363), mRNA.					
Rattus norvegicus	RefSeq	GI_17105349-S	ILMN_271251	DECR1	NM_057197.1	NM_057197.1		117543	17105349	NM_057197.1	Decr1	NP_476545.1	ILMN_1370450	0001940338	S	803	TGATCGAGAGAATCCCCTGTGGTCGGCTGGGAACTGTGGAGGAACTTGCC	5	-	30492952-30493001	5q13	Rattus norvegicus 2,4-dienoyl CoA reductase 1, mitochondrial (Decr1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+ [goid 8670] [evidence TAS]; Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+ [goid 8670] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527855-S	ILMN_292231	CD79B	NM_133533.2	NM_133533.2		171055	57527855	NM_133533.2	Cd79b	NP_598217.1	ILMN_1354836	0003450152	S	907	CCGGGGTAGAAGGACAATAGGGTGGTGGCATGGAGTAAGGAGTTCTCTGG	10	-	95703383-95703432	10q32.1	Rattus norvegicus Cd79b molecule, immunoglobulin-associated beta (Cd79b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; A membrane-bound antigen receptor complex consisting in its basic form of an antigen-binding subunit (the membrane immunoglobulin or mIg), comprised of two identical heavy chains and two identical light chains held together by disulfide bonds, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins [goid 19815] [evidence ISS]; A membrane-bound antigen receptor complex consisting in its basic form of an antigen-binding subunit (the membrane immunoglobulin or mIg), comprised of two identical heavy chains and two identical light chains held together by disulfide bonds, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins [goid 19815] [evidence IEA]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108607; Igb; B29	MGC108607; Igb; B29
Rattus norvegicus	RefSeq	GI_40254790-S	ILMN_268086	SSTR4	NM_013036.2	NM_013036.2		25555	40254790	NM_013036.2	Sstr4	NP_037168.1	ILMN_1362458	0002120433	S	1581	GGCTCTCTGCTGTGTGGTAGCATAGGGCATACGGTGATACAGGGGAGAAG	3	+	137151999-137152048	3q41	Rattus norvegicus somatostatin receptor 4 (Sstr4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IEA]	Smstr4	Smstr4
Rattus norvegicus	RefSeq	GI_62651351-S	ILMN_59206	LOC314494	XM_234602.3	XM_234602.3		314494	62651351	XM_234602.3	LOC314494	XP_234602.2	ILMN_1362383	0005670215	S	314	CAGTCTGCAAAGTGAAGACACAACCACTTACTACTGTGCCAGAGACACAG				6q33	PREDICTED: Rattus norvegicus Ig heavy-chain-like (LOC314494), mRNA.					
Rattus norvegicus	RefSeq	GI_21326464-S	ILMN_262684	UXS1	NM_139336.1	NM_139336.1		246232	21326464	NM_139336.1	Uxs1	NP_647552.1	ILMN_1352769	0005910427	S	1723	CCTAGAGGTATGGCCAGCTGGGCAGTGCACCAGTGTTTATTTGGGGACAG	Un|NW_047865.1	-	1166468-1166517		Rattus norvegicus UDP-glucuronate decarboxylase 1 (Uxs1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: UDP-D-glucuronic acid = UDP-D-xylose + CO2 [goid 48040] [evidence IDA]; Catalysis of the reaction: UDP-D-glucuronic acid = UDP-D-xylose + CO2 [goid 48040] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]	UGD; MGC93157	UGD; MGC93157
Rattus norvegicus	RefSeq	GI_34874758-S	ILMN_49284	TCTE1_PREDICTED	XM_236941.3	XM_236941.3		316242	109485812	XM_236941.3	Tcte1_predicted	XP_236941.2	ILMN_1650078	0002810356	S	1346	TCGACCTGCGACTGTCAGATGTAGCCCAGGAGAGCGAGTACCTCATTGGC	9	-	11065300-11065349	9q12	PREDICTED: Rattus norvegicus t-complex-associated testis expressed 1 (predicted) (Tcte1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655683-S	ILMN_273977	ALG1_PREDICTED	XM_001076672.1	XM_001076672.1		360475	109489593	XM_001076672.1	Alg1_predicted	XP_001076672.1	ILMN_1356562	0006380097	S	1143	GGTCTGGACCTGCCCATGAAGGTGGTGGACATGTTTGGGTGCTACTTGCC				10q12	PREDICTED: Rattus norvegicus asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase) (predicted) (Alg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653489-S	ILMN_55553	LOC500970	XM_576380.1	XM_576380.1		500970	62653489	XM_576380.1	LOC500970	XP_576380.1	ILMN_1355354	0003390563	S	1979	CGGTGGCAATAACAATTTTGGAGGAAACTTTGGAGGCGGGAGCTTTGGCC					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC500970), mRNA.					
Rattus norvegicus	RefSeq	GI_56605759-A	ILMN_270288	PRL7A4	NM_001008341.1	NM_001008341.1		306929	56605759	NM_001008341.1	Prl7a4	NP_001008342.1	ILMN_1376962	0005080504	S	209	GCCACCAGAGTGTCTCAGAATATCAGGAACCTGAACATAGTATTGCGCAG	17	+	43726156-43726187:43726939-43726956	17p11	Rattus norvegicus prolactin family 7, subfamily a, member 4 (Prl7a4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658907-S	ILMN_54652	LOC304479	XM_222162.3	XM_222162.3		304479	62658907	XM_222162.3	LOC304479	XP_222162.3	ILMN_1363726	0007100739	S	2325	GAGAGACCATCAGGAAGGGAGAGCCACAGATCCAGCTCATGCTGCAACCC				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein B930074I24 (LOC304479), mRNA.					
Rattus norvegicus	RefSeq	GI_62638975-S	ILMN_284696	LOC690816	XM_001075732.1	XM_001075732.1		690816	109458012	XM_001075732.1	LOC690816	XP_001075732.1	ILMN_1355833	0003440594	S	2298	CTGGATCACTTTTCTCCCTATCTACCATAGCACCAAGGGGAAGACCACAG	1	+	62255674-62255723	1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC690816), mRNA.					
Rattus norvegicus	RefSeq	GI_62647997	ILMN_70202	GRPCA	XM_579719.1	XM_579719.1		192266	62647997	XM_579719.1	Grpca	XP_579719.1	ILMN_1650703	0001230520	S	659	ACCACAGCACGACAGCGGTCGTCCAAAGAAGCCCCTCCTTCCTTTTATCG				4q43	PREDICTED: Rattus norvegicus glutamine/glutamic acid-rich protein A (Grpca), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]	The action of a molecule that contributes to the structural integrity of tooth enamel [goid 30345] [evidence IPI]; Interacting selectively with hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentine [goid 46848] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62666621-S	ILMN_264979	FOXP3_PREDICTED	XM_001064182.1	XM_001064182.1		317382	109511590	XM_001064182.1	Foxp3_predicted	XP_001064182.1	ILMN_1373411	0003840131	S	1283	TTGAGTTTCGCAAGAAGAGGAGCCAACGCCCCAGCAAGTGCTCCAACCCC				Xq13	PREDICTED: Rattus norvegicus forkhead box P3 (predicted) (Foxp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643121	ILMN_55173	LOC499560	XM_574884.1	XM_574884.1		499560	62643121	XM_574884.1	LOC499560	XP_574884.1	ILMN_1649797	0004150673	S	518	ATGCTGGCGAGGATGGGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC499560), mRNA.					
Rattus norvegicus	RefSeq	GI_62665146-S	ILMN_292556	RGD1311132_PREDICTED	XM_001072174.1	XM_001072174.1		291961	109508660	XM_001072174.1	RGD1311132_predicted	XP_001072174.1	ILMN_1374361	0002060037	S	1885	GCTGCTCAGCTTAAAGAGCTTTTCCTTGGTTTGGGCCTGGAGGAGAGCGC				19q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E430013E20 gene (predicted) (RGD1311132_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078964-S	ILMN_268588	RGD1311123	NM_001014118.1	NM_001014118.1		360539	62078964	NM_001014118.1	RGD1311123	NP_001014140.1	ILMN_1361705	0004010717	S	2167	ACCTGGAGCCTGTAGCTCACTGCCACTGTCCCGTGTCTCCAAAGGATGGT	10	-	47513459-47513508	10q22-q23	Rattus norvegicus similar to 1300013J15Rik protein (RGD1311123), mRNA.					
Rattus norvegicus	RefSeq	GI_62652667-S	ILMN_265999	FOXH1_PREDICTED	XM_001075361.1	XM_001075361.1		300054	109482495	XM_001075361.1	Foxh1_predicted	XP_001075361.1	ILMN_1374025	0005080551	S	893	CATGGGAATGTCCAGGAGGGGGAGCAGAGCTTCCTTGTGGGGACAGCTAC				7q34	PREDICTED: Rattus norvegicus forkhead box H1 (predicted) (Foxh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645191-S	ILMN_287110	SP5_PREDICTED	XM_001059614.1	XM_001059614.1		296510	109470061	XM_001059614.1	Sp5_predicted	XP_001059614.1	ILMN_1372266	0006760008	S	1070	TCGGACTTTGCACAGTACCAGAGCCAGATCGCCGCGCTGCTGCAGACCAA				3q21	PREDICTED: Rattus norvegicus trans-acting transcription factor 5 (predicted) (Sp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758411-S	ILMN_268779	LENEP	NM_053614.1	NM_053614.1		113917	16758411	NM_053614.1	Lenep	NP_446066.1	ILMN_1374833	0002030070	S	496	CAGTGACCCCACCAACCCACACACTTGAAGAACCAGGAATGGACTGCCCC	2	-	181598112-181598161	2q34	Rattus norvegicus lens epithelial protein (Lenep), mRNA.				Elp; Lep503	Elp; Lep503
Rattus norvegicus	RefSeq	GI_62663164-S	ILMN_268372	AGTPBP1_PREDICTED	XM_001061502.1	XM_001061502.1		290986	109505367	XM_001061502.1	Agtpbp1_predicted	XP_001061502.1	ILMN_1355144	0003710601	S	3794	CAGGCGATTATGAGCCTTCTGCCCAAGACGAAGCCCTTTCCGACTCTGAG				17p14	PREDICTED: Rattus norvegicus ATP/GTP binding protein 1 (predicted) (Agtpbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641254-S	ILMN_273568	RGD1564587_PREDICTED	XR_009309.1	XR_009309.1		293463	109462836	XR_009309.1	RGD1564587_predicted		ILMN_1372677	0004070390	S	602	GCATCTGAGAGCCCACTAAAAGGCATCCTGGGCTACATTGAGGACTAAGT				1q36	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1564587_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649110-S	ILMN_57761	CDK5RAP2	XM_575844.1	XM_575844.1		286919	62649110	XM_575844.1	Cdk5rap2	XP_575844.1	ILMN_1371600	0004150142	S	6489	TTGGTCATCACCCACCAAGTCCTTCGGAAAGCCAGGGGAAACCTGGAGGT				5q31	PREDICTED: Rattus norvegicus CDK5 activator-binding protein (Cdk5rap2), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence TAS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence TAS]	Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with neuronal Cdc2-like kinase, an enzyme involved in the regulation of neuronal differentiation and neuro-cytoskeleton dynamics [goid 42808] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576458-S	ILMN_271261	OLR1597	NM_001000911.1	NM_001000911.1		405222	47576458	NM_001000911.1	Olr1597	NP_001000911.1	ILMN_1367608	0002850161	S	872	GTCTAAGGAATCGGGCTGTGCAAACAGCTCTGCGAAATGCTTTCCGGGGG	13	-	90030776-90030825	13q24	Rattus norvegicus olfactory receptor 1597 (Olr1597), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1597	Olr1597
Rattus norvegicus	RefSeq	GI_62644085	ILMN_58468	MAN1A2_PREDICTED	XM_227543.4	XM_227543.4		295319	109465337	XM_227543.4	Man1a2_predicted	XP_227543.4	ILMN_1650898	0001990707	S	2125	CTGGGAAGCCGCATTGGCTATTGAGAAGTCCTGCCGAGTCAGTGGTGGGT	2	-	195573083-195573117:195575650-195575664	2q34	PREDICTED: Rattus norvegicus mannosidase, alpha, class 1A, member 2 (predicted) (Man1a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656153-S	ILMN_51173	ZFP496_PREDICTED	XM_220512.4	XM_220512.4		287361	109488150	XM_220512.4	Zfp496_predicted	XP_220512.3	ILMN_1350602	0003840026	S	1784	GGACTGTGAGAAGAGCTTCCAGCGACACGACTATCTGGTGAGGCACCGCA	10	-	45790721-45790770	10q22	PREDICTED: Rattus norvegicus zinc finger protein 496 (predicted) (Zfp496_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393471-S	ILMN_289963	GPX4	NM_017165.1	NM_017165.1		29328	8393471	NM_017165.1	Gpx4	NP_058861.2	ILMN_1374479	0004810722	S	569	TTGATAAGAACGGCTGCGTGGTGAAGCGCTATGGTCCCATGGAGGAGCCC	7	-	11162862-11162911	7q11	Rattus norvegicus glutathione peroxidase 4 (Gpx4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence ISS]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence IEA]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IDA]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence IDA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IMP]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]; Catalysis of the reaction: a lipid hydroperoxide + 2 reduced glutathione = 2 H2O + lipid + 2 oxidized glutathione [goid 47066] [evidence IDA]; Catalysis of the reaction: a lipid hydroperoxide + 2 reduced glutathione = 2 H2O + lipid + 2 oxidized glutathione [goid 47066] [evidence IEA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: a lipid hydroperoxide + 2 reduced glutathione = 2 H2O + lipid + 2 oxidized glutathione [goid 47066] [evidence IEA]	gpx-4	gpx-4
Rattus norvegicus	RefSeq	GI_62658283-S	ILMN_61095	LOC501789	XM_577198.1	XM_577198.1		501789	62658283	XM_577198.1	LOC501789	XP_577198.1	ILMN_1360687	0004230044	S	900	GGCTCTGACAGGAAGCAGAGTGAGAAGAGGCAGCTTGTTGATTCCCTGGG					PREDICTED: Rattus norvegicus similar to mitogen-activated protein kinase kinase kinase 13 (LOC501789), mRNA.					
Rattus norvegicus	RefSeq	GI_62717874-S	ILMN_290425	LOC367398	XR_007958.1	XR_007958.1		367398	109496276	XR_007958.1	LOC367398		ILMN_1368116	0005550717	S	187	GGTAGTGTGTGCCATTCCGGCGGTATAATGGTGGAGTTGGTAGGTACGCC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) (LOC367398), mRNA.					
Rattus norvegicus	RefSeq	GI_62646108-S	ILMN_68707	APBA2BP_PREDICTED	XM_230761.3	XM_230761.3		311562	62646108	XM_230761.3	Apba2bp_predicted	XP_230761.3	ILMN_1351984	0001980053	S	858	GCTAAAGGCCTGGTCAGCTGGTACAGGGTCTCTCAGCCCAGGAATCAGGA				3q41	PREDICTED: Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, member 1 binding protein (predicted) (Apba2bp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34935414-S	ILMN_301736	RGD1566048_PREDICTED	XM_345712.1	XM_345712.1		366712	34935414	XM_345712.1	RGD1566048_predicted	XP_345713.1	ILMN_1356765	0006520739	S	106	ACCACTCAGACAGCGGGCCTGCCACCGAGCTGTTACAAAGTGTTTGACCT	6	+	121763315-121763364	6q32	PREDICTED: Rattus norvegicus similar to polyglutamine tract binding protein-1 (predicted) (RGD1566048_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662128-S	ILMN_65533	LOC498573	XM_573847.2	XM_573847.2		498573	109502072	XM_573847.2	LOC498573	XP_573847.2	ILMN_1350666	0004010400	S	1710	TGACATCACATTACTCACCAGAGAGTCAGCGAGTGACCTAAGGGAAGGAC	15|NW_047466.1	+	566239-566288		PREDICTED: Rattus norvegicus similar to mcf.2 transforming (LOC498573), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34879730-S	ILMN_59307	LOC363981	XM_344137.1	XM_344137.1		363981	34879730	XM_344137.1	LOC363981	XP_344138.1	ILMN_1367045	0006380528	S	210	CTTGAGTATACACCAGATCAGTTTGTGAGTGGAAAGAGAATTCTCCGTGG					PREDICTED: Rattus norvegicus similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) (LOC363981), mRNA.					
Rattus norvegicus	RefSeq	GI_16758989-S	ILMN_287507	STXBP3	NM_053637.1	NM_053637.1		114095	16758989	NM_053637.1	Stxbp3	NP_446089.1	ILMN_1362177	0002510091	S	1953	GCTGCTGCGGTCACTGAAGCGGTGTAAATAGTGTGTGGAGGAACACGGTC	2	-	204395939-204395988	2q34	Rattus norvegicus syntaxin binding protein 3 (Stxbp3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence TAS]; The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IDA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]	Munc18-c; MGC112606	Munc18-c; MGC112606
Rattus norvegicus	RefSeq	GI_27545391-S	ILMN_67025	GALNAC4S6ST	NM_173310.2	NM_173310.2		286974	77404377	NM_173310.2	GalNAc4S6ST	NP_775432.2	ILMN_1353568	0006380593	S	1616	AGATCCTGCGGGACTTCTACGGGCCTTTCAACACAAGGCTGGCACAGGTC	1	-	191708638-191708687	1q41	Rattus norvegicus N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase (GalNAc4S6ST), mRNA.				MGC93074	MGC93074
Rattus norvegicus	RefSeq	GI_62664832-I	ILMN_63952	NUP93_PREDICTED	XM_574200.1	XM_574200.1		291874	62664832	XM_574200.1	Nup93_predicted	XP_574200.1	ILMN_1376123	0004050022	S	2606	CAGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTATGAATTTGGCC				19p12	PREDICTED: Rattus norvegicus nucleoporin 93 (predicted) (Nup93_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302003-S	ILMN_280541	GLS2	NM_138904.1	NM_138904.1		192268	20302003	NM_138904.1	Gls2	NP_620259.1	ILMN_1364889	0003290408	S	1893	GCCCCATTCCCTCATCGGACAGCACAGAGAAAAGCTTCAGTGGACACCTG	7	+	1494957-1495006	7q11	Rattus norvegicus glutaminase 2 (liver, mitochondrial) (Gls2), nuclear gene encoding mitochondrial protein, mRNA.	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence TAS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]	Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ga	Ga
Rattus norvegicus	RefSeq	GI_62666896-S	ILMN_292096	RGD1565785_PREDICTED	XM_001061435.1	XM_001061435.1		501570	109511872	XM_001061435.1	RGD1565785_predicted	XP_001061435.1	ILMN_1370152	0000610671	S	689	TCACTGAACTTCCCCTCAAACCTATCCAGCGGTACTCATCCTACTGGAGG				Xq22	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 21 (predicted) (RGD1565785_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526848-S	ILMN_296369	TNFSF13	NM_001009623.1	NM_001009623.1		287437	57526848	NM_001009623.1	Tnfsf13	NP_001009623.1	ILMN_1348834	0001190735	S	1547	GCGGTCAACTTGGTCTAAATAGTGAGTTCCAGGCCATCCAGGGGTTACAG	10	-	56499990-56500039	10q24	Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13 (Tnfsf13), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes [goid 48298] [evidence ISS]	Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]	MGC95053	MGC95053
Rattus norvegicus	RefSeq	GI_62657132-S	ILMN_68312	LOC497674	XM_579401.1	XM_579401.1		497674	62657132	XM_579401.1	LOC497674	XP_579401.1	ILMN_1354816	0000380082	S	4976	GGGTTACTTTTGGGCAGTATTGCAGTCTCACCCTCCCGATGGGCTGTAGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017212 (LOC497674), mRNA.					
Rattus norvegicus	RefSeq	GI_62665120-S	ILMN_55495	LOC291943	XM_226370.2	XM_226370.2		291943	62665120	XM_226370.2	LOC291943	XP_226370.1	ILMN_1358125	0006660315	S	493	GGGATCCACGGCCTAATGGACAAAATGGAAATAAAGGACCTCTGGGCTAC				19q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L21 (LOC291943), mRNA.					
Rattus norvegicus	RefSeq	GI_47059101-S	ILMN_279222	BTNL7	NM_212488.1	NM_212488.1		406159	47059101	NM_212488.1	Btnl7	NP_997653.1	ILMN_1355289	0002510131	S	1640	CATAGTGTGGATCACTGCCTAAGTCGTCAATGTGAGTCCATGTGGGAGTG	20	+	4447347-4447351:4447352-4447396	20p12	Rattus norvegicus butyrophilin-like 7 (Btnl7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62660824-S	ILMN_57328	LOC363492	XM_343815.2	XM_343815.2		363492	62660824	XM_343815.2	LOC363492	XP_343816.2	ILMN_1355694	0006110253	S	1094	ACAGAGACTGAAGGAACAACCATTCAGAGCCTGCCCCACATGTGGCCCAT					PREDICTED: Rattus norvegicus similar to Ac1262 (LOC363492), mRNA.					
Rattus norvegicus	RefSeq	GI_56090404-S	ILMN_301964	RGD1359310	NM_001007659.1	NM_001007659.1		300240	56090404	NM_001007659.1	RGD1359310	NP_001007660.1	ILMN_1361290	0000840451	S	1271	TGTCACCTTTGCAGTGACGTGGTCCTGGGTGTAGCCTTTGCGCCTGCTCT	7	+	140038806-140038855	7q36	Rattus norvegicus similar to RIKEN cDNA 9430023L20 (RGD1359310), mRNA.				MGC94201	MGC94201
Rattus norvegicus	RefSeq	GI_62662274-S	ILMN_59656	LOC361117	XM_341405.2	XM_341405.2		361117	62662274	XM_341405.2	LOC361117	XP_341406.1	ILMN_1362081	0003610402	S	153	ATTTGATGGCGAGAGGCAAGCGCAGGAACCCAAGCAACAGAAACCAAGAC				1q54	PREDICTED: Rattus norvegicus similar to LRRGT00149 (LOC361117), mRNA.					
Rattus norvegicus	RefSeq	GI_47606376-S	ILMN_300045	OLR374	NM_001001289.1	NM_001001289.1		405935	47606376	NM_001001289.1	Olr374	NP_001001289.1	ILMN_1354060	0003610300	S	908	AAGATGTGAAAGGCGCGCTGAGGAACTCCATCTTCCATAAAGCAGTCTGA	1	+	216825909-216825958	1q43	Rattus norvegicus olfactory receptor 374 (Olr374), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr374	Olr374
Rattus norvegicus	RefSeq	GI_62650050-S	ILMN_60985	LOC313720	XM_233684.2	XM_233684.2		313720	62650050	XM_233684.2	LOC313720	XP_233684.2	ILMN_1369517	0003440102	S	3439	CTCCTGGCTGTGAGTTTGGCTGTCAATGCGCTCTTCACCTCGGCCTACCT					PREDICTED: Rattus norvegicus similar to CG7744-PA (predicted) (LOC313720), mRNA.					
Rattus norvegicus	RefSeq	GI_62656312-S	ILMN_59817	SOX15_PREDICTED	XM_343921.3	XM_343921.3		363632	109488375	XM_343921.3	Sox15_predicted	XP_343922.3	ILMN_1363938	0003610722	S	327	TGACTACCCCGACTACAAGTACCGACCCCGGCGAAAAAGCAAAAACCCGG	10	+	56473152-56473201	10q24	PREDICTED: Rattus norvegicus SRY-box containing gene 15 (predicted) (Sox15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662926-S	ILMN_290442	RGD1565043_PREDICTED	XM_001074859.1	XM_001074859.1		306618	109504455	XM_001074859.1	RGD1565043_predicted	XP_001074859.1	ILMN_1354713	0000580037	S	4240	CAGGAGGACCTGGTTTCTTCGGTGATGGTGTGGCAGATTCCACTGCTGGG				16q12.5	PREDICTED: Rattus norvegicus similar to Rho guanine nucleotide exchange factor (GEF) 10 (predicted) (RGD1565043_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653392-S	ILMN_264923	RGD1304745_PREDICTED	XM_001075066.1	XM_001075066.1		300381	109484278	XM_001075066.1	RGD1304745_predicted	XP_001075066.1	ILMN_1359505	0005270181	S	942	GCTCATGTCTGGAGACAGAAGCCCCAAGTTTGAACGAACAGAAGATCTGC				8q12	PREDICTED: Rattus norvegicus similar to methyl-CpG binding domain protein 3-like protein 2 (predicted) (RGD1304745_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650040-S	ILMN_263590	NMNAT1	NM_001037556.1	NM_001037556.1		298653	83025118	NM_001037556.1	Nmnat1	NP_001032645.1	ILMN_1354003	0001850538	S	657	GGCTGGCAGTGACGCTCAGAAATTCATCTACGAGTCCGACGTGCTGTGGC	5	-	166550291-166550340	5q36	Rattus norvegicus nicotinamide nucleotide adenylyltransferase 1 (Nmnat1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence ISS]	Catalysis of the reaction: ATP + nicotinamide nucleotide = diphosphate + NAD+ [goid 309] [evidence ISS]; Catalysis of the reaction: ATP + nicotinamide nucleotide = diphosphate + NAD+ [goid 309] [evidence ISS]; Catalysis of the reaction: ATP + nicotinamide nucleotide = diphosphate + NAD+ [goid 309] [evidence IEA]; Catalysis of the reaction: ATP + nicotinate ribonucleotide = diphosphate + deamido-NAD+ [goid 4515] [evidence ISS]; Catalysis of the reaction: ATP + nicotinate ribonucleotide = diphosphate + deamido-NAD+ [goid 4515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_41386744-S	ILMN_266056	RXFP1	NM_201417.1	NM_201417.1		295144	41386744	NM_201417.1	Rxfp1	NP_958820.1	ILMN_1348992	0006020706	S	2141	ACACTCCATCATTCATCTGGGTGGAAATGTGGCCCTTGCAGGAGATGTCC	2	-	171044719-171044768	2q32	Rattus norvegicus relaxin/insulin-like family peptide receptor 1 (Rxfp1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IMP]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence ISS]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence ISS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57012429-A	ILMN_282305	KRT35	NM_001008820.1	NM_001008820.1		287697	57012429	NM_001008820.1	Krt35	NP_001008820.1	ILMN_1376922	0006130154	S	986	CCCAGCAGAGCATGAGAGACGCTTTGGACTCCACCCTGGCCGAGACAGAA	10	-	89031918-89031954:89032426-89032438	10q32.1	Rattus norvegicus keratin 35 (Krt35), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Ka30	Ka30
Rattus norvegicus	RefSeq	GI_62649858-S	ILMN_51157	RGD1563135_PREDICTED	XM_575935.2	XM_575935.2		366485	109475670	XM_575935.2	RGD1563135_predicted	XP_575935.1	ILMN_1363095	0001400500	S	79	GCCACAAAGTGATGAAAAACGTCAGCAAGCCGAGACACAGCCGCCGCGGG	5	-	154876721-154876770	5q36	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022504 (predicted) (RGD1563135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648031	ILMN_268604	RPUSD3_PREDICTED	XM_342737.2	XM_342737.2		362416	62648031	XM_342737.2	Rpusd3_predicted	XP_342738.2	ILMN_1649873	0006770091	S	998	ACTTCTCTCGGACTTTGCAGTGCCTTCGGCTCTCTCAGCAATAGGCCCCC	4	-	149297462-149297468:149297469-149297511	4q42	PREDICTED: Rattus norvegicus RNA pseudouridylate synthase domain containing 3 (predicted) (Rpusd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650148-S	ILMN_269702	LOC474147	XM_001052967.1	XM_001052967.1		474147	109475904	XM_001052967.1	LOC474147	XP_001052967.1	ILMN_1351304	0005900722	S	431	AGACCAGCAGGTCCTCACTTAGCCCATCCTACACCTAGGTATCCGCCATC	5	-	172497036-172497085	5q36	PREDICTED: Rattus norvegicus RBSC-skeletrophin (LOC474147), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34882357-S	ILMN_270521	LOC501280	XR_007805.1	XR_007805.1		501280	109486608	XR_007805.1	LOC501280		ILMN_1362242	0006980341	S	38	AGCTCCCTCAGTGCGCAACGTCCAACGTGTTCGCCATGTTTGACTAGTCC					PREDICTED: Rattus norvegicus similar to myosin regulatory light chain-like (LOC501280), mRNA.					
Rattus norvegicus	RefSeq	GI_62638550-S	ILMN_289512	LOC681288	XM_001061092.1	XM_001061092.1		681288	109457767	XM_001061092.1	LOC681288	XP_001061092.1	ILMN_1357836	0002690484	S	659	GACAGCACAGTGGGCAGGAGCAGGAGGCTGAGCAGAATCAAAAATGAGGC	1	-	46957656-46957705	1q11	PREDICTED: Rattus norvegicus similar to brachyury 2 (LOC681288), mRNA.					
Rattus norvegicus	RefSeq	GI_62649431-S	ILMN_51253	LOC298409	XM_216496.3	XM_216496.3		298409	62649431	XM_216496.3	LOC298409	XP_216496.3	ILMN_1353857	0002100722	S	3227	TGACCAAAAGAATCTGGGGTACCAGGACCTTGGGGTGCAGACTCCAGCTC				5q35	PREDICTED: Rattus norvegicus hypothetical LOC298409 (LOC298409), mRNA.					
Rattus norvegicus	RefSeq	GI_27545407-S	ILMN_281365	VOM2R18	NM_173318.1	NM_173318.1		286984	27545407	NM_173318.1	Vom2r18	NP_775440.1	ILMN_1356355	0006350047	S	4236	AGCCCAACACCCTCCACAGATTAAAGGAAGTGATTACAGGTCACAGGGAC	1	+	61746244-61746293	1q12	Rattus norvegicus vomeronasal 2 receptor, 18 (Vom2r18), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Vom2r18	Vom2r18
Rattus norvegicus	RefSeq	GI_13027403-S	ILMN_276518	IMPG1	NM_023958.1	NM_023958.1		66014	13027403	NM_023958.1	Impg1	NP_076448.1	ILMN_1360327	0002230133	S	2356	GGACAAGCAACCCCATGCAGGCCACCAGATCACTCTACAAACCAAGCTCG	8	-	85374873-85374906:85379145-85379160	8q31	Rattus norvegicus interphotoreceptor matrix proteoglycan 1 (Impg1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Mlgapc	Mlgapc
Rattus norvegicus	RefSeq	GI_18426815-S	ILMN_272066	PDZK1IP1	NM_130401.1	NM_130401.1		81916	18426815	NM_130401.1	Pdzk1ip1	NP_569085.1	ILMN_1352044	0004150750	S	470	GTCCCCAGGCTACAGGGAATGTGGAGTTGATGCCTACCATCTCACCCAGC	5	+	135466668-135466717	5q36	Rattus norvegicus PDZK1 interacting protein 1 (Pdzk1ip1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Dd96; Map17	Dd96; Map17
Rattus norvegicus	RefSeq	GI_11067380-S	ILMN_265373	POLD1	NM_021662.1	NM_021662.1		59294	11067380	NM_021662.1	Pold1	NP_067694.1	ILMN_1368379	0000430403	S	3002	GGCCTTCACCAAGCGCCGAAACTCTTGTATTGGCTGCCGCTCCGTAATCG	1	-	95011636-95011685	1q22	Rattus norvegicus polymerase (DNA directed), delta 1, catalytic subunit (Pold1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Progression through S phase, the part of the mitotic cell cycle during which DNA synthesis takes place [goid 84] [evidence ISS]; Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template [goid 731] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands [goid 6261] [evidence IDA]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence ISS]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]; Correction of replication errors by DNA polymerase using a 3'-5' exonuclease activity [goid 45004] [evidence ISS]; Correction of replication errors by DNA polymerase using a 3'-5' exonuclease activity [goid 45004] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end [goid 8408] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end [goid 8408] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164138-S	ILMN_277625	RGD1304580	NM_001009283.1	NM_001009283.1		292781	57164138	NM_001009283.1	RGD1304580	NP_001009283.1	ILMN_1356394	0002810301	S	804	TTGGCCACCGGAAACATTTGGCGGCTCACCATCGAAGGCGTCTCCAGAAG	1	+	85264302-85264351	1q21	Rattus norvegicus similar to Hypothetical protein MGC38513 (RGD1304580), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	MGC109014	MGC109014
Rattus norvegicus	RefSeq	GI_62652232-S	ILMN_268482	LOC500845	XR_009634.1	XR_009634.1		500845	109482046	XR_009634.1	LOC500845		ILMN_1367264	0001850577	S	152	GGATGGACCACCTGCTAGTCATCACTTTGCTGGCTCCTGGCAATGCCTTC				7q22	PREDICTED: Rattus norvegicus LRRG00131 (LOC500845), misc RNA.					
Rattus norvegicus	RefSeq	GI_62642453-S	ILMN_287085	COL17A1_PREDICTED	XM_001060023.1	XM_001060023.1		294027	109463975	XM_001060023.1	Col17a1_predicted	XP_001060023.1	ILMN_1351155	0006660239	S	5107	GGTACGGACACCGATCACCTTCCCACGGGCTTACACGGTTTGACTGGTTG				1q54	PREDICTED: Rattus norvegicus procollagen, type XVII, alpha 1 (predicted) (Col17a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20806128-S	ILMN_265563	ACVR1C	NM_139090.1	NM_139090.1		245921	20806128	NM_139090.1	Acvr1c	NP_620790.1	ILMN_1367140	0000060402	S	1624	CCTAAGGCGCATACAGGCGACGGGAAAGCCCTCACCACTCTCTTTCATGT	3	-	40027383-40027432	3q21	Rattus norvegicus activin A receptor, type IC (Acvr1c), mRNA.	A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed [goid 48179] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IPI]	habrec1; Alk-7; Alk7	habrec1; Alk-7; Alk7
Rattus norvegicus	RefSeq	GI_62652266-S	ILMN_60713	MARS_PREDICTED	XM_216910.3	XM_216910.3		299851	62652266	XM_216910.3	Mars_predicted	XP_216910.3	ILMN_1367069	0002510427	S	2530	AAGGGTCCCCCAAGCCAGCAGTTGTTGAGGCAGTTACTACAGCAGGGTCG					PREDICTED: Rattus norvegicus methionine-tRNA synthetase (predicted) (Mars_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21245097-A	ILMN_280582	TUBB3	NM_139254.1	NM_139254.1		246118	21245097	NM_139254.1	Tubb3	NP_640347.1	ILMN_1376818	0001990142	S	1483	AGCTACTGACACTGCCCCCAGCTTACCTTCCTACCAGCTCTTCAGGGCAC	19	+	53751419-53751468	19q12	Rattus norvegicus tubulin, beta 3 (Tubb3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IMP]; The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart [goid 51225] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence NAS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639840-S	ILMN_285336	NIPA2_PREDICTED	XM_001054428.1	XM_001054428.1		308667	109462034	XM_001054428.1	Nipa2_predicted	XP_001054428.1	ILMN_1359316	0005050139	S	1332	GGCAAGATATGCCTGTTGATGATGTCATTGGGACCTTGAGTGGCTTCTTC				1q22	PREDICTED: Rattus norvegicus non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human) (predicted) (Nipa2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18543356-S	ILMN_271289	SLC38A4	NM_130748.1	NM_130748.1		170573	18543356	NM_130748.1	Slc38a4	NP_570104.1	ILMN_1360427	0005670647	S	1735	CGACTGGATTTACAACCCTCCAAATCCCGACCACCACTAATCCTTGGGGG	7	-	135693146-135693156:135693157-135693195	7q35	Rattus norvegicus solute carrier family 38, member 4 (Slc38a4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Ata3	Ata3
Rattus norvegicus	RefSeq	GI_62643223-S	ILMN_60144	CYP7B1	XM_342218.3	XM_342218.3		25429	109464641	XM_342218.3	Cyp7b1	XP_342219.1	ILMN_1373760	0006040113	S	1661	AGGGTGGCAGAGAAGCTTAGCGGAATAAGGCTGCACATGCTGAGCTCTGT	2	-	103103824-103103873	2q24	PREDICTED: Rattus norvegicus cytochrome P450, family 7, subfamily b, polypeptide 1 (Cyp7b1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence TAS]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence ISS]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IDA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence TAS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: an oxysterol + NADPH + O2 = 7-alpha-hydroxylated oxysterol + NADP+ + H2O [goid 8396] [evidence TAS]; Catalysis of the reaction: an oxysterol + NADPH + O2 = 7-alpha-hydroxylated oxysterol + NADP+ + H2O [goid 8396] [evidence ISS]; Catalysis of the reaction: an oxysterol + NADPH + O2 = 7-alpha-hydroxylated oxysterol + NADP+ + H2O [goid 8396] [evidence IEA]; Catalysis of the reaction: an oxysterol + NADPH + O2 = 7-alpha-hydroxylated oxysterol + NADP+ + H2O [goid 8396] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the reactions: cholest-5-ene-3beta,25-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,25-triol + NADP+ + H2O and cholest-5-ene-3beta,27-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,27-triol + NADP+ + H2O [goid 33783] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650103-S	ILMN_63462	RGD1564061_PREDICTED	XM_578504.2	XM_578504.2		502994	109475784	XM_578504.2	RGD1564061_predicted	XP_578504.1	ILMN_1369401	0002650184	S	1359	GGAGCTGTATCCTGCCCCTTTGGAGTGCTATGATGACACAGGTGATGTCC	5	+	162332592-162332641	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732496O08 (predicted) (RGD1564061_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645306-S	ILMN_52358	TTN	XM_575155.2	XM_575155.2		84015	109468336	XM_575155.2	Ttn	XP_575155.2	ILMN_1362687	0004010408	S	1139	GGGTCACAGCCCTAGCTTCAGTCACCAAGACTTCCTGTAGGGTCGGAAAG	3	-	59452165-59452214	3q23	PREDICTED: Rattus norvegicus titin (Ttn), mRNA.	The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines [goid 31430] [evidence ISS]; The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line [goid 31672] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IDA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; Anterior movement of an organism, following the direction of the head of the animal [goid 43056] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence IDA]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle [goid 55002] [evidence ISS]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence ISS]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639045-S	ILMN_57366	OBOX6_PREDICTED	XM_218300.3	XM_218300.3		292629	62639045	XM_218300.3	Obox6_predicted	XP_218300.3	ILMN_1364254	0004590037	S	2485	TGCAGCCCACATCCAGTCTTAGCCCAAACTCCACAGACCAGCACAGCTAT				1q21	PREDICTED: Rattus norvegicus oocyte specific homeobox 6 (predicted) (Obox6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660571-S	ILMN_270851	RGD1309656_PREDICTED	XM_001059604.1	XM_001059604.1		305386	109500725	XM_001059604.1	RGD1309656_predicted	XP_001059604.1	ILMN_1363830	0006100059	S	1654	CGGAACAGCGATGGCCTCTGGCCTTGACTCTGGATGCTGACAGTTGATGA				14q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ90013 (predicted) (RGD1309656_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641328-S	ILMN_279401	LOC687796	XM_001078482.1	XM_001078482.1		687796	109462903	XM_001078482.1	LOC687796	XP_001078482.1	ILMN_1370186	0003190504	S	1012	CATCAAGGCAGAAGAGCGGCATAAGGCAGGCCATTCGGAGGAGGCCATGT					PREDICTED: Rattus norvegicus hypothetical protein LOC687795, transcript variant 1 (LOC687796), mRNA.					
Rattus norvegicus	RefSeq	GI_62656849-S	ILMN_48883	LOC363670	XM_343960.2	XM_343960.2		363670	62656849	XM_343960.2	LOC363670	XP_343961.2	ILMN_1354570	0000840136	S	287	GGCAACCCCAAACCTTCAAGACAAGGTGCTGGTTACCGTCAGCAAGGTGC					PREDICTED: Rattus norvegicus similar to Da1-6 (LOC363670), mRNA.					
Rattus norvegicus	RefSeq	GI_62657481-S	ILMN_67429	RGD1311925_PREDICTED	XM_340949.3	XM_340949.3		360677	109489501	XM_340949.3	RGD1311925_predicted	XP_340950.1	ILMN_1349172	0001780129	S	700	GGGACCTCTGTTTCTTCGGCTGTGGAACCTTGAAGTGACCAGAAAGTAGG	10	-	109933997-109934046	10q32.3	PREDICTED: Rattus norvegicus similar to BC003940 protein (predicted) (RGD1311925_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661033-S	ILMN_265118	LOC682965	XM_001063888.1	XM_001063888.1		682965	109502115	XM_001063888.1	LOC682965	XP_001063888.1	ILMN_1349921	0004480300	S	208	GCAGGCCCTGGAGCAGTTCGTACAGGTCATCCTGGAAGCCTGGGTGAAAG					PREDICTED: Rattus norvegicus similar to potassium channel, subfamily K, member 16 (LOC682965), mRNA.					
Rattus norvegicus	RefSeq	GI_62640993-A	ILMN_266946	DKK3	NM_138519.1	NM_138519.1		171548	19924046	NM_138519.1	Dkk3	NP_612528.1	ILMN_1376321	0006550537	S	2890	TCCCGCAGTATAGGGGATCGGGAAGCAAAGGAAGCAATGTAGGACTCAGC	1	-	169924918-169924967	1q33	Rattus norvegicus dickkopf homolog 3 (Xenopus laevis) (Dkk3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IEA]		Reic; p29	Reic; p29
Rattus norvegicus	RefSeq	GI_13994130-S	ILMN_278566	NGFG	XM_001081892.1	XM_001081892.1		24594	109519983	XM_001081892.1	Ngfg	XP_001081892.1	ILMN_1355333	0003840195	S	268	GCCTCGGGCTGGGGCAGCATCACACCTGACGGATTGGAATTAAGTGATGA				1q22	PREDICTED: Rattus norvegicus nerve growth factor, gamma (Ngfg), mRNA.					
Rattus norvegicus	RefSeq	GI_62666101-S	ILMN_58345	LOC499448	XM_574771.1	XM_574771.1		499448	62666101	XM_574771.1	LOC499448	XP_574771.1	ILMN_1353931	0000430731	S	1054	CAGTGGAGACGCTCTCCCCAGGCCCTGTACACCTGGAAGGTGCAGTTCAG					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC499448), mRNA.					
Rattus norvegicus	RefSeq	GI_62639091-S	ILMN_268724	SYMPK	XM_001075350.1	XM_001075350.1		292683	109461344	XM_001075350.1	Sympk	XP_001075350.1	ILMN_1357163	0000520156	S	3832	ACCCCGGCTGAGGAGGTTATGGAATACCGGGAGGAAGGTCCTGAATGCGA				1q21	PREDICTED: Rattus norvegicus symplekin (Sympk), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644198-S	ILMN_273730	RGD1309189_PREDICTED	XM_227591.3	XM_227591.3		310787	62644198	XM_227591.3	RGD1309189_predicted	XP_227591.3	ILMN_1353354	0002030044	S	3120	GCTGCTAGGGCCACGTCAGTAACAAACGCCTTCCACACAGGTTTCTGGGG	2	-	204456519-204456568	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E230011A21 gene (predicted) (RGD1309189_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52345436-S	ILMN_284815	SPHK1	NM_133386.2	NM_133386.2		170897	52345436	NM_133386.2	Sphk1	NP_596877.2	ILMN_1373357	0006220168	S	2996	CTACCCTCTAGTTAGAATGAGACTGGGGTCAGAGTCCCACTGGCTGGGCC	10	+	106645464-106645513	10q32.3	Rattus norvegicus sphingosine kinase 1 (Sphk1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; Any process that modulates the frequency, rate, or extent of interleukin-1 beta production [goid 32651] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + sphinganine = ADP + sphinganine 1-phosphate [goid 8481] [evidence ISS]; Catalysis of the reaction: ATP + sphinganine = ADP + sphinganine 1-phosphate [goid 8481] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: sphingosine + ATP = sphingosine 1-phosphate + ADP [goid 17050] [evidence ISS]; Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663902-S	ILMN_60381	LOC307128	XM_240734.3	XM_240734.3		307128	62663902	XM_240734.3	LOC307128	XP_240734.3	ILMN_1375231	0006940059	S	3040	CACCAAGCAGTCCCCACCACATCCTGACCTGGCAGACTGGAGAAGCAACA				17q12.3	PREDICTED: Rattus norvegicus similar to mKIAA1294 protein (predicted) (LOC307128), mRNA.					
Rattus norvegicus	RefSeq	GI_13928711-S	ILMN_279802	RARA	NM_031528.1	NM_031528.1		24705	13928711	NM_031528.1	Rara	NP_113716.1	ILMN_1368986	0006860039	S	1962	AACTTCCCCCTGCTTCGGATGGTGACAGAAGATGCCCAGGGTGGGGGAGA	10	+	87753096-87753145	10q31	Rattus norvegicus retinoic acid receptor, alpha (Rara), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32689] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production [goid 32720] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-13 production [goid 32736] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-4 production [goid 32753] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-5 production [goid 32754] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T-helper 2 cell differentiation [goid 45630] [evidence ISS]; Any process that modulates the frequency, rate or extent of anti-apoptosis [goid 45767] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid [goid 1972] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence ISS]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence TAS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A [goid 3708] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_46195451-S	ILMN_263593	CALD1	NM_013146.2	NM_013146.2		25687	46195451	NM_013146.2	Cald1	NP_037278.1	ILMN_1357776	0000840672	S	2747	GGACAAAGCCCAAACCCTGTTTATTTGTGGCCGTGAAGTTCACCTCCTCC	4	+	62156756-62156805	4q22	Rattus norvegicus caldesmon 1 (Cald1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell [goid 30478] [evidence ISS]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence TAS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence TAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IEA]; Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11693171-S	ILMN_298511	CALR	NM_022399.1	NM_022399.1		64202	11693171	NM_022399.1	Calr	NP_071794.1	ILMN_1368515	0004210524	S	1740	CAGGACTGGGCCATTTGTGGGGCAGCCAGTTCTAGCACAGCTCACACTGA	19	+	24969573-24969622	19q11	Rattus norvegicus calreticulin (Calr), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]; Any process that modulates the frequency, rate or extent of meiosis, the process by which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes [goid 40020] [evidence IEA]; Any process that modulates the frequency, rate or extent of meiosis, the process by which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes [goid 40020] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642502-S	ILMN_67477	NRAP_PREDICTED	XM_217637.4	XM_217637.4		307982	109460272	XM_217637.4	Nrap_predicted	XP_217637.3	ILMN_1364040	0006760484	S	5129	TCGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTC	1	-	262592342-262592391	1q55	PREDICTED: Rattus norvegicus nebulin-related anchoring protein (predicted) (Nrap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646735-S	ILMN_274255	RGD1560376_PREDICTED	XR_007771.1	XR_007771.1		502714	109472932	XR_007771.1	RGD1560376_predicted		ILMN_1353378	0001660112	S	53	AGTTTCTCTTCGAGATCACCCAGCATCTGGTGCAGGCCACCGGCAAGCCA				4q11	PREDICTED: Rattus norvegicus similar to Macrophage migration inhibitory factor (MIF) (predicted) (RGD1560376_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654798-S	ILMN_52807	BAI3_PREDICTED	XM_217367.4	XM_217367.4		301309	109485841	XM_217367.4	Bai3_predicted	XP_217367.3	ILMN_1356134	0006770600	S	4782	GGCTAGTGGAGAGACGGCCAAGTGTACAGTTCTCACCACCCCGTGTTGTA	9	-	23759826-23759875	9q13	PREDICTED: Rattus norvegicus brain-specific angiogenesis inhibitor 3 (predicted) (Bai3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34932047-S	ILMN_62089	LOC361337	XM_346960.1	XM_346960.1		361337	34932047	XM_346960.1	LOC361337	XP_346961.1	ILMN_1352138	0005220026	S	22	TTCCTCAATGTCCAGGGTGGCAAAGAGCTGGGCAAGGGGAGTGTGTGAGG					PREDICTED: Rattus norvegicus hypothetical LOC361337 (LOC361337), mRNA.					
Rattus norvegicus	RefSeq	GI_62664432-S	ILMN_50932	LOC498869	XM_574154.1	XM_574154.1		498869	62664432	XM_574154.1	LOC498869	XP_574154.1	ILMN_1361072	0000430152	S	1041	GCTGATGGAAATGAGCCGCTGTGCCGAGCAGTTACCACTAAAGGAGACAG				18q12.1	PREDICTED: Rattus norvegicus similar to Methionine aminopeptidase 2 (MetAP 2) (Peptidase M 2) (Initiation factor 2 associated 67 kDa glycoprotein) (p67) (p67eIF2) (LOC498869), mRNA.					
Rattus norvegicus	RefSeq	GI_62645262-S	ILMN_292625	HOXD4_PREDICTED	XM_001064107.1	XM_001064107.1		288153	109470123	XM_001064107.1	Hoxd4_predicted	XP_001064107.1	ILMN_1353520	0001990487	S	1326	TGGCATAGTAACTGTGGGGGAGTTGAGGCAGAAGGCCAGCACCCAGTGCT				3q23	PREDICTED: Rattus norvegicus homeo box D4 (predicted) (Hoxd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653609-S	ILMN_295953	SIDT2_PREDICTED	XM_001068825.1	XM_001068825.1		315617	109484644	XM_001068825.1	Sidt2_predicted	XP_001068825.1	ILMN_1369730	0007000711	S	4159	CTAGCTCTTGGGCTGGGAGAAGAGGCAGGTCTGGGCCTTTGTTTCTGAGC				8q22	PREDICTED: Rattus norvegicus SID1 transmembrane family, member 2 (predicted) (Sidt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090595-A	ILMN_292358	LEFTY2	NM_001007556.1	NM_001007556.1		289316	56090595	NM_001007556.1	Lefty2	NP_001007557.1	ILMN_1376360	0000450576	S	1113	CGTGTAGTTGTGCCTCGGATGGGGCACTCATACCTAGGGGGATAGATCTG	13	+	96626255-96626304	13q26	Rattus norvegicus Left-right determination factor 2 (Lefty2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Ebaf2	Ebaf2
Rattus norvegicus	RefSeq	GI_62663361-S	ILMN_61197	AOF1_PREDICTED	XM_225213.4	XM_225213.4		306819	109504691	XM_225213.4	Aof1_predicted	XP_225213.4	ILMN_1350874	0005390452	S	2483	ACAAGGAACTGTTTACTTTGCTGGTGAGGCAACAAACAGGCATTTCCCAC	17	-	23657316-23657338:23659374-23659400	17p13	PREDICTED: Rattus norvegicus amine oxidase, flavin containing 1 (predicted) (Aof1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661016-S	ILMN_263855	RGD1309414_PREDICTED	XM_001057186.1	XM_001057186.1		361004	109502100	XM_001057186.1	RGD1309414_predicted	XP_001057186.1	ILMN_1362091	0000380195	S	5997	GACAGCCTTGTCTGGGAGAGGGCGTTGGGTGGCCTCTGGTATTTATTTGG				15p16	PREDICTED: Rattus norvegicus similar to KIAA0913 protein (predicted) (RGD1309414_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641216-S	ILMN_269047	DNAH3_PREDICTED	XM_001079121.1	XM_001079121.1		293539	109462779	XM_001079121.1	Dnah3_predicted	XP_001079121.1	ILMN_1358823	0002470204	S	12226	GAGCTTCCAACAGACATGCCCCAAAAGCACTGGATAAACCGAGGCGTGGC				1q35	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 3 (predicted) (Dnah3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642618-S	ILMN_269047	DNAH3_PREDICTED	XM_001079121.1	XM_001079121.1		293539	109462779	XM_001079121.1	Dnah3_predicted	XP_001079121.1	ILMN_1354439	0000870008	S	5490	GTGTGGGATGATCTACATGGAGCCCCACCAGCTAGGCTGGAAGCCCTTGA				1q35	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 3 (predicted) (Dnah3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657250-S	ILMN_51945	LOC501732	XM_577131.1	XM_577131.1		501732	62657250	XM_577131.1	LOC501732	XP_577131.1	ILMN_1365160	0001690170	S	37	CTAGTCCTGTGGGCATTTATTTTTCCTGTCGTTTTGGCGCTGAAGGACGC				10q32.1	PREDICTED: Rattus norvegicus similar to gamma non-muscle actin (LOC501732), mRNA.					
Rattus norvegicus	RefSeq	GI_7549753-S	ILMN_288437	CYP7A1	NM_012942.1	NM_012942.1		25428	7549753	NM_012942.1	Cyp7a1	NP_037074.1	ILMN_1370739	0000380056	S	3368	TGTGCGGTGATGGTTGGCAAATGATACCCATGGAGCAAGGTTACTCTTCC	5	-	19707285-19707334	5q12	Rattus norvegicus cytochrome P450, family 7, subfamily a, polypeptide 1 (Cyp7a1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: cholesterol + NADPH + H+ + O2 = 7-alpha-hydroxycholesterol + NADP+ + H2O [goid 8123] [evidence IDA]; Catalysis of the reaction: cholesterol + NADPH + H+ + O2 = 7-alpha-hydroxycholesterol + NADP+ + H2O [goid 8123] [evidence IEA]; Catalysis of the reaction: cholesterol + NADPH + H+ + O2 = 7-alpha-hydroxycholesterol + NADP+ + H2O [goid 8123] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	CYP7; CHAP; CYP7S1	CYP7; CHAP; CYP7S1
Rattus norvegicus	RefSeq	GI_62662525-S	ILMN_56603	LOC364533	XM_344492.2	XM_344492.2		364533	62662525	XM_344492.2	LOC364533	XP_344493.2	ILMN_1371521	0005700364	S	143	GAGTGCCATGGGGGCAGGGGACAGGGTCAGCTCTTATGTGCAATCAGGTT				16p14	PREDICTED: Rattus norvegicus similar to CG1676-PA (LOC364533), mRNA.					
Rattus norvegicus	RefSeq	GI_62657465-S	ILMN_66712	AZI1_PREDICTED	XM_340945.3	XM_340945.3		360672	109489491	XM_340945.3	Azi1_predicted	XP_340946.3	ILMN_1366102	0006550672	S	3234	TAGATGAGGTGCATCGGAGGGTGAAGACGGCTCTAGCGAGGAAGGAGGCA	10	-	109475473-109475504:109476056-109476073	10q32.3	PREDICTED: Rattus norvegicus 5-azacytidine induced gene 1 (predicted) (Azi1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638931-S	ILMN_277281	ZFP446_PREDICTED	XR_008004.1	XR_008004.1		308365	109460977	XR_008004.1	Zfp446_predicted		ILMN_1355563	0000870273	S	1482	GCGGCGCCACTTCTGCGGGGACTGTGGGTGTAGTTTTGACTGGAAGTTTC				1q21	PREDICTED: Rattus norvegicus zinc finger protein 446 (predicted) (Zfp446_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39930492-S	ILMN_302183	NRTN	NM_053399.1	NM_053399.1		84423	39930492	NM_053399.1	Nrtn	NP_445851.1	ILMN_1365985	0005340592	S	520	TCCTTCCTGGACGTACACAGCCGCTACCACACGCTGCAAGAGCTGTCGGC	Un|NW_047865.1	+	330534-330583		Rattus norvegicus neurturin (Nrtn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_42714643-S	ILMN_292797	NPM2	NM_203340.1	NM_203340.1		290359	42714643	NM_203340.1	Npm2	NP_976085.1	ILMN_1350878	0006100609	S	544	AGGCCCAGCCCTCAGGACAAGAGCCCCTGGAAGAAGGGAAAATCTACACC	15	-	51049579-51049593:51049675-51049708:51052055-51052055	15p11	Rattus norvegicus nucleophosmin/nucleoplasmin 2 (Npm2), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the cytoplasm [goid 789] [evidence ISS]; The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; Any process involved in the progression from anaphase/telophase to G1 that is associated with a conversion from high to low mitotic CDK activity [goid 7096] [evidence ISS]; The union of male and female gametes to form a zygote [goid 7338] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whereby a relatively unspecialized immature germ cell acquires the specialized features of a mature female gamete [goid 9994] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of meiosis [goid 45836] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA [goid 51054] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62639671-S	ILMN_272923	RGD1562619_PREDICTED	XM_001080631.1	XM_001080631.1		499147	109461891	XM_001080631.1	RGD1562619_predicted	XP_001080631.1	ILMN_1371549	0000510044	S	213	CGCGTTCGTGGGGAAAGTGGTCCTCGATCAACTGGAAACAGTGGTGACAT				1q22	PREDICTED: Rattus norvegicus similar to SCRL protein variant 1 (predicted) (RGD1562619_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658438-S	ILMN_267735	TRRAP_PREDICTED	XM_001071336.1	XM_001071336.1		288471	109496591	XM_001071336.1	Trrap_predicted	XP_001071336.1	ILMN_1360742	0000360114	S	11441	AACAGCCTGGACAACCTGTGTCGCATGGACCCTGCCTGGCATCCGTGGCT				12p11	PREDICTED: Rattus norvegicus transformation/transcription domain-associated protein (predicted) (Trrap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577770-S	ILMN_263817	OLR14	NM_001000695.1	NM_001000695.1		404901	47577770	NM_001000695.1	Olr14	NP_001000695.1	ILMN_1351905	0001740400	S	834	GTTGCCTCCAGCACTTAATCCTTTGATATACAGCCTGAGGAACTCTGATG	1	-	142393242-142393291	1q32	Rattus norvegicus olfactory receptor 14 (Olr14), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr14	Olr14
Rattus norvegicus	RefSeq	GI_62718433-S	ILMN_60890	LOC501400	XM_576813.2	XM_576813.2		501400	109513654	XM_576813.2	LOC501400	XP_576813.2	ILMN_1364822	0001570121	S	1114	AGCTTTTTGCTTAATACCCCCACTCCAACAAAACAGACCTACTTCCACTC	Un|NW_047892.1	-	1689891-1689940		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501400), mRNA.					
Rattus norvegicus	RefSeq	GI_62717908-S	ILMN_60890	LOC501400	XM_576813.2	XM_576813.2		501400	109513654	XM_576813.2	LOC501400	XP_576813.2	ILMN_1371542	0004760484	S	1249	GGAGCAGCAAAAATTGCTTAGCGCAATTCCTCTATTTAAAGTATGCTTGA	Un|NW_047892.1	-	1689756-1689805		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501400), mRNA.					
Rattus norvegicus	RefSeq	GI_62641305-S	ILMN_279075	SPN	XM_001080140.1	XM_001080140.1		24796	109462899	XM_001080140.1	Spn	XP_001080140.1	ILMN_1361495	0001740673	S	3320	CAGAAATGTGTAATGACTTCAGAAATGCCTGCGGCTGACACGGGGTAGGG				1q36	PREDICTED: Rattus norvegicus sialophorin (Spn), mRNA.	A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a protozoan [goid 1562] [evidence ISS]; Any process that stops, prevents, or reduces the rate of type IV hypersensitivity, a type of inflammatory response [goid 1808] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation [goid 31295] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism [goid 50688] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation [goid 50868] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any part of a bacterial cell [goid 8367] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662557-S	ILMN_58151	LOC502074	XM_577508.1	XM_577508.1		502074	62662557	XM_577508.1	LOC502074	XP_577508.1	ILMN_1355159	0002100064	S	1151	CTCACGGATGGAAGGAAGCGATGAGAGGATTTTAAAGCTTAAGGTCTTGC					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC502074), mRNA.					
Rattus norvegicus	RefSeq	GI_62650881-S	ILMN_59114	LOC314232	XM_234301.3	XM_234301.3		314232	62650881	XM_234301.3	LOC314232	XP_234301.3	ILMN_1357818	0003450408	S	1231	TAGCAGTGTGCGAGCCCTCAGGAAGGGGCCAGAAAGGAGGGTGTGAAGAA					PREDICTED: Rattus norvegicus similar to SERTA domain containing 4 (LOC314232), mRNA.					
Rattus norvegicus	RefSeq	GI_62646412-S	ILMN_281347	MOCS3_PREDICTED	XM_001073889.1	XM_001073889.1		311655	109471385	XM_001073889.1	Mocs3_predicted	XP_001073889.1	ILMN_2038969	0004540768	S	1166	CTGCCCTCCAGGAGGAGAAGCGAAATTCACAGGAAGGAGCTGCTCTTGCC				3q42	PREDICTED: Rattus norvegicus molybdenum cofactor synthesis 3 (predicted) (Mocs3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27704991-S	ILMN_281347	MOCS3_PREDICTED	XM_001073889.1	XM_001073889.1		311655	109471385	XM_001073889.1	Mocs3_predicted	XP_001073889.1	ILMN_2040712	0002260564	S	1047	CGTGTTGCTGGACGTTCGGCCTCAAGTAGAGGTGGACATTTGCCGTCTGC				3q42	PREDICTED: Rattus norvegicus molybdenum cofactor synthesis 3 (predicted) (Mocs3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657785-S	ILMN_48216	GPR128_PREDICTED	XM_221527.4	XM_221527.4		304014	109493065	XM_221527.4	Gpr128_predicted	XP_221527.4	ILMN_1354835	0000770348	S	2198	CGCTGTCTTCATCCTTTGACCGAGCGAAGCCAATGCCTTCAATGACCCCG	11	+	44817128-44817177	11q12	PREDICTED: Rattus norvegicus G protein-coupled receptor 128 (predicted) (Gpr128_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660480-S	ILMN_50210	LOC364155	XM_573601.1	XM_573601.1		364155	62660480	XM_573601.1	LOC364155	XP_573601.1	ILMN_1369854	0001400097	S	6	CCTCTGAGCTGGGGCACAGCATGTGGGCTTGTGGAGTCCTGTGGGTTTAA				14p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC364155), mRNA.					
Rattus norvegicus	RefSeq	GI_62660381-S	ILMN_283508	GSH2_PREDICTED	XM_001076578.1	XM_001076578.1		364140	109500543	XM_001076578.1	Gsh2_predicted	XP_001076578.1	ILMN_1373819	0001230347	S	1034	GAAGGAGGGGAAAGGCGCTTCGAGGAACAATCACGCAAGCTGCAAGTGCG				14p11	PREDICTED: Rattus norvegicus genomic screened homeo box 2 (predicted) (Gsh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657928	ILMN_273017	RGD1561232_PREDICTED	XM_001070211.1	XM_001070211.1		498086	109494432	XM_001070211.1	RGD1561232_predicted	XP_001070211.1	ILMN_1650872	0006220546	S	1006	CCGCACCGCTCGAAGACCGAGATCTCTGAGATGAACCCTAACATCAGTCG					PREDICTED: Rattus norvegicus similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A) (predicted) (RGD1561232_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14389298-S	ILMN_273705	VIM	NM_031140.1	NM_031140.1		81818	14389298	NM_031140.1	Vim	NP_112402.1	ILMN_1364377	0006620377	S	1599	CTGGGATAGAAACGAGCTCAGCACATAACAACTGACACCCCCAAAAGGCG	17	+	87855566-87855615	17q12.3	Rattus norvegicus vimentin (Vim), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; A type of intermediate filament, typically made up of one or more of the proteins vimentin, desmin, glial fibrillary acidic protein (GFAP), and peripherin. Unlike the keratins, the type III proteins can form both homo- and heteropolymeric IF filaments [goid 45098] [evidence TAS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence IEA]; Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62079284-S	ILMN_295561	TCEAL8	NM_001014275.1	NM_001014275.1		367909	62079284	NM_001014275.1	Tceal8	NP_001014297.1	ILMN_1349537	0006770369	S	423	GGAAGCAAAGACATTCCCGAAGCCGTCCTTACCCTGTGTGCTTCAGGCCT	X	-	123482153-123482202	Xq35	Rattus norvegicus transcription elongation factor A (SII)-like 8 (Tceal8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		UR-NR#1	UR-NR#1
Rattus norvegicus	RefSeq	GI_62644528-S	ILMN_283584	RGD1308723_PREDICTED	XM_001079278.1	XM_001079278.1		292160	109467765	XM_001079278.1	RGD1308723_predicted	XP_001079278.1	ILMN_1366921	0006770692	S	1165	GTTGGCACGTAAAGCTCCAGTTCCCTCAGAGCCAGGCGGAGTATGTAGAG				2q44	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20729 (predicted) (RGD1308723_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078692-S	ILMN_288390	ORAI1	NM_001013982.1	NM_001013982.1		304496	62078692	NM_001013982.1	Orai1	NP_001014004.1	ILMN_1359460	0001690632	S	960	GAGGGGACCATTCTCTAACACCGGGCACCCACTATGCCTAAGTCCTCACC				12q16	Rattus norvegicus ORAI calcium release-activated calcium modulator 1 (Orai1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA];  [goid 15279] [evidence ISS];  [goid 15279] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718670-S	ILMN_52707	LOC305764	XM_223854.3	XM_223854.3		305764	62718670	XM_223854.3	LOC305764	XP_223854.3	ILMN_1367131	0000580538	S	2160	GCTCCAAAACACTTTCTTCCTGAGATGTTAAGCAAATTTGCGGCTCGTGC					PREDICTED: Rattus norvegicus similar to Eif4g2 protein (LOC305764), mRNA.					
Rattus norvegicus	RefSeq	GI_62653203-S	ILMN_63833	LOC497828	XM_579605.1	XM_579605.1		497828	62653203	XM_579605.1	LOC497828	XP_579605.1	ILMN_1354456	0000630082	S	2817	CCAGGTGCCCAGTGATTTTGCCATCTTCCATGTGGTCCCGATGACTCTCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_080411 (LOC497828), mRNA.					
Rattus norvegicus	RefSeq	GI_16758867-S	ILMN_48422	RRAGA	NM_053973.1	NM_053973.1		117044	16758867	NM_053973.1	Rraga	NP_446425.1	ILMN_1371210	0006420091	S	1104	GAGAAGCTAGAGAGAGTAGATGGCCCCAAGCATAGCCTCCTCATGCGCTG				5q32	Rattus norvegicus Ras-related GTP-binding protein ragA (Rraga), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Interactions, directly with the host cell macromolecular machinery, to allow virus replication [goid 19048] [evidence ISS]; Interactions, directly with the host cell macromolecular machinery, to allow virus replication [goid 19048] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cytolysis [goid 45919] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cytolysis [goid 45919] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence ISS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Raga	Raga
Rattus norvegicus	RefSeq	GI_62644620-S	ILMN_62847	LOC362069	XM_342371.2	XM_342371.2		362069	62644620	XM_342371.2	LOC362069	XP_342372.2	ILMN_1370229	0005570014	S	344	GCTGGAACAGCAGCGCATGGAGCGGAGACTTGAAGAAGTTTCAGAAAGAG					PREDICTED: Rattus norvegicus similar to Tnip1 protein (LOC362069), mRNA.					
Rattus norvegicus	RefSeq	GI_62649704-S	ILMN_273494	TMEM54	NM_001034151.1	NM_001034151.1		362605	77627974	NM_001034151.1	Tmem54	NP_001029323.1	ILMN_1369106	0004010672	S	695	GGTGGGGGAAAAGCTGCCACCATACGATACAAGCAAGCCCAGAGCCCCTG	5	+	148267195-148267220:148267590-148267613	5q36	Rattus norvegicus transmembrane protein 54 (Tmem54), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124700; RGD1304886	MGC124700; RGD1304886
Rattus norvegicus	RefSeq	GI_62657727-S	ILMN_283821	RGD1564302_PREDICTED	XM_001071558.1	XM_001071558.1		501768	109493958	XM_001071558.1	RGD1564302_predicted	XP_001071558.1	ILMN_1353909	0006760010	S	249	GGGGATTCGAGGGTCCTTCAGCCCCTGCCAGTCAACTTTTTCAGGATCTC				11q11	PREDICTED: Rattus norvegicus similar to anagen-specific protein mKAP13 (predicted) (RGD1564302_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012399-A	ILMN_275150	RT1-CE7	NM_001008845.1	NM_001008845.1		368153	57012399	NM_001008845.1	RT1-CE7	NP_001008845.1	ILMN_1376270	0003060402	S	955	GCCATCTCTGCTGTGGCCATCATTGGAGCTGTGTTGGCTGTTGTGAGGAA	20	+	3412525-3412574	20p12	Rattus norvegicus RT1 class I, CE7 (RT1-CE7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1-C/E7	RT1-C/E7
Rattus norvegicus	RefSeq	GI_56090613-S	ILMN_290734	FBLIM1	NM_001007554.1	NM_001007554.1		362650	56090613	NM_001007554.1	Fblim1	NP_001007555.1	ILMN_1372951	0000070091	S	1271	GGGACCCACAAGGAAGGAGAGAACGAACTCCCACAAGCTGTCCTCTGGTT	5	-	160468651-160468700	5q36	Rattus norvegicus filamin binding LIM protein 1 (Fblim1), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105665; Cal	MGC105665; Cal
Rattus norvegicus	RefSeq	GI_62661595-S	ILMN_278360	RGD1564996_PREDICTED	XM_001065521.1	XM_001065521.1		290300	109502558	XM_001065521.1	RGD1564996_predicted	XP_001065521.1	ILMN_1369872	0006020750	S	1322	CTAGCTCAGGATGCTCAAAGGACTCCAAGCAGAGAGGGCTGGGAAGCCAG				15p12	PREDICTED: Rattus norvegicus similar to tumor necrosis factor receptor superfamily, member 19 (predicted) (RGD1564996_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638915-S	ILMN_50251	LOC292609	XM_218282.2	XM_218282.2		292609	62638915	XM_218282.2	LOC292609	XP_218282.2	ILMN_1366180	0001780347	S	1079	CTCCGGGATCTGGGTGCGCGGTTTCTTTAGACTGGGAAAGACGGCTCTAG				1q21	PREDICTED: Rattus norvegicus similar to V2r2 protein (LOC292609), mRNA.					
Rattus norvegicus	RefSeq	GI_62666448-S	ILMN_269791	2610020O08RIK	XM_001063039.1	XM_001063039.1		298342	109512515	XM_001063039.1	2610020o08rik	XP_001063039.1	ILMN_1369537	0003170068	S	1041	TGATTGGCCCAGAGGCTCCCAAAACACTTGCCTCCCAAGATGATAAGCCC				Xq12	PREDICTED: Rattus norvegicus nuclear NF-kappaB activating protein (2610020o08rik), mRNA.					
Rattus norvegicus	RefSeq	GI_62718089-S	ILMN_296626	LOC680682	XM_001056700.1	XM_001056700.1		680682	109513144	XM_001056700.1	LOC680682	XP_001056700.1	ILMN_1359781	0000130725	S	898	TGAAGACCTGGAGAGAATGGCGGAGGCAGTCATGTCAATTCTGCACAACT	Un|NW_047868.1	+	76622-76671		PREDICTED: Rattus norvegicus hypothetical protein LOC680682 (LOC680682), mRNA.					
Rattus norvegicus	Unigene	Rn.12417	ILMN_160854	RN.12417	Rn.12417		Rn.12417		82508848	DV715525			ILMN_1530530	0006110390	S	84	AGAAACATTCTATTTGATCCATTATTTTTGGAATTGTCCCTGATGTTGAG					RVL5205 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62655488	ILMN_49946	LOC501198	XM_576626.1	XM_576626.1		501198	62655488	XM_576626.1	LOC501198	XP_576626.1	ILMN_1650216	0003170487	S	439	ATCAAACCTAAAGATAATAGCCCAGGTGGGGCAGTCCCTGACCGCCAGAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501198), mRNA.					
Rattus norvegicus	RefSeq	GI_62657075-S	ILMN_297305	VAT1	NM_001033683.1	NM_001033683.1		287721	76096305	NM_001033683.1	Vat1	NP_001028855.1	ILMN_1366784	0002350541	S	2379	AAAGTGGGGACCTTTGAGGCTAGGTGGGGGTCACCTGCTGCTTCTGAGCT	10	-	90484028-90484077	10q32.1	Rattus norvegicus vesicle amine transport protein 1 homolog (T californica) (Vat1), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC124668	MGC124668
Rattus norvegicus	RefSeq	GI_38454297-S	ILMN_281475	MGC72996	NM_198781.1	NM_198781.1		362301	38454297	NM_198781.1	MGC72996	NP_942076.1	ILMN_1363360	0006350070	S	942	GGACTCCAGGTGTTAGCGGAGGCCACCCCATGTGATCTTCATAGCTCTGG	4	+	6096103-6096152	4q11	Rattus norvegicus Unknown (protein for MGC:72996) (MGC72996), mRNA.					
Rattus norvegicus	RefSeq	GI_62642675-S	ILMN_55630	LOC502493	XM_577975.1	XM_577975.1		502493	62642675	XM_577975.1	LOC502493	XP_577975.1	ILMN_1352339	0007100725	S	664	AGTCTCTGCAGAAGGGCGAAGAGCTTGACTGCAGCCAGGTGAGTGCCAGA					PREDICTED: Rattus norvegicus similar to multiple C2-domains with two transmembrane regions 1 isoform L (LOC502493), mRNA.					
Rattus norvegicus	RefSeq	GI_62718534-S	ILMN_66773	LOC501418	XM_576829.1	XM_576829.1		501418	62718534	XM_576829.1	LOC501418	XP_576829.1	ILMN_1357595	0003710019	S	755	CACTTTCTTCTTCAGAAAACATCACTTGAGAGACAACTTGGGGGACCGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501418), mRNA.					
Rattus norvegicus	RefSeq	GI_62656281	ILMN_58045	RGD1563106_PREDICTED	XM_220595.4	XM_220595.4		303238	109488260	XM_220595.4	RGD1563106_predicted	XP_220595.4	ILMN_1650485	0000110286	S	3671	TAATGACACTGCCTAAGGTGGCCTCCCAGAGCTTCCAGAACCGCAGACGC	10	+	55788535-55788537:55788538-55788584	10q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1563106_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27673073-S	ILMN_58045	RGD1563106_PREDICTED	XM_220595.4	XM_220595.4		303238	109488260	XM_220595.4	RGD1563106_predicted	XP_220595.4	ILMN_2039321	0006510634	S	3020	ACCAAAGCCAGTGCTCCCTTGCCCCACATCTGCCTGGCTGAACTTCTCCA	10	+	55786622-55786632:55787212-55787250	10q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1563106_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661219-S	ILMN_67352	LOC501965	XM_577393.1	XM_577393.1		501965	62661219	XM_577393.1	LOC501965	XP_577393.1	ILMN_2040631	0004610259	S	151	GAGTTCGACCTGGGCAACCTGCTGGCTTCTGACAGCAACCCCTCGATGGT				15p14	PREDICTED: Rattus norvegicus similar to mKIAA0112 protein (LOC501965), mRNA.					
Rattus norvegicus	RefSeq	GI_34870597-S	ILMN_61446	RGS11	XM_573061.2	XM_573061.2		54291	109487928	XM_573061.2	Rgs11	XP_573061.2	ILMN_1368545	0004810170	S	215	AGGAAGCCCTGCACCTGGGCACACTCCTGACACAGCACGGCTACATCTAC	10	+	15470460-15470462:15470534-15470580	10q12	PREDICTED: Rattus norvegicus regulator of G-protein signaling 11 (Rgs11), mRNA.		Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655909-S	ILMN_61446	RGS11	XM_573061.2	XM_573061.2		54291	109487928	XM_573061.2	Rgs11	XP_573061.2	ILMN_1360503	0003120402	S	1592	TGGCCCAGCTGATTCCTAGGGCAAGATTTCATTGGCTGATCCTTGCCAGG	10	+	15477578-15477627	10q12	PREDICTED: Rattus norvegicus regulator of G-protein signaling 11 (Rgs11), mRNA.		Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651729-S	ILMN_56667	MOBKL2B_PREDICTED	XM_343161.3	XM_343161.3		362833	109480183	XM_343161.3	Mobkl2b_predicted	XP_343162.1	ILMN_1369144	0004810463	S	920	ATGGCTTCCGCCCTCTCGTGGTGACTGTGAGCTCTTGGACTCTAACCGGT	7	+	10536511-10536560	7q11	PREDICTED: Rattus norvegicus MOB1, Mps One Binder kinase activator-like 2B (yeast) (predicted) (Mobkl2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650740-S	ILMN_52111	LOC500659	XM_576037.1	XM_576037.1		500659	62650740	XM_576037.1	LOC500659	XP_576037.1	ILMN_1371506	0003140114	S	2838	AGGCCTTTGGATTCCCTGGTGATCAGAAGGAGGTTGTTGACGATCCTGGC				6q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC500659), mRNA.					
Rattus norvegicus	RefSeq	GI_62655818-S	ILMN_56132	LOC287112	XM_213238.3	XM_213238.3		287112	62655818	XM_213238.3	LOC287112	XP_213238.3	ILMN_1374113	0007100593	S	1091	CCTGAGCTTCACCAGACCCCCTGCTATCCTGGAGTTTTTCCTCATCCACC				10q12	PREDICTED: Rattus norvegicus similar to ATP-binding cassette, sub-family A member 3 (LOC287112), mRNA.					
Rattus norvegicus	RefSeq	GI_62657392-S	ILMN_61535	LOC363696	XM_343979.2	XM_343979.2		363696	62657392	XM_343979.2	LOC363696	XP_343980.2	ILMN_1367626	0000110563	S	668	GTCTGGCCACAGCATCTGGAAGGCAGAAAGGTCTGAGGTGGCTAGGTACC					PREDICTED: Rattus norvegicus similar to NF-180 (LOC363696), mRNA.					
Rattus norvegicus	RefSeq	GI_6978808-S	ILMN_291205	ENO1	NM_012554.1	NM_012554.1		24333	6978808	NM_012554.1	Eno1	NP_036686.1	ILMN_1371591	0001450204	S	1335	CAGATCCTTAGAATCGAGGAGGAACTGGGCAGCAAAGCCAAGTTTGCCGG	5	+	167404780-167404790:167405142-167405180	5q36	Rattus norvegicus enolase 1, alpha (Eno1), mRNA.	A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water [goid 15] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O [goid 4634] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O [goid 4634] [evidence ISS]; Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O [goid 4634] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652947-S	ILMN_49202	LOC300173	XM_217027.4	XM_217027.4		300173	109481208	XM_217027.4	LOC300173	XP_217027.3	ILMN_1366036	0004200609	S	1011	CATCTGGTCGCTGCTGGAGAGATTCAACTCCACACAAATCGCCGCCATGG	7	-	131740664-131740713	7q35	PREDICTED: Rattus norvegicus similar to CG9996-PA (LOC300173), mRNA.					
Rattus norvegicus	RefSeq	GI_47576474-S	ILMN_300515	OLR1605	NM_001000088.1	NM_001000088.1		289923	47576474	NM_001000088.1	Olr1605	NP_001000088.1	ILMN_1351887	0000110338	S	419	GTTTGCTTATGGTGCTAGGCTCCTGGGCTGGTGGGTCTTTGGATGGATTC	15	-	12385268-12385317	15p16	Rattus norvegicus olfactory receptor 1605 (Olr1605), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1605; ratchr15-12385736-12384768_ORF	Olr1605; ratchr15-12385736-12384768_ORF
Rattus norvegicus	RefSeq	GI_62717754-S	ILMN_68884	LOC301977	XM_217510.3	XM_217510.3		301977	62717754	XM_217510.3	LOC301977	XP_217510.3	ILMN_1367906	0006380095	S	137	ATCCTTGCCTCTTCTACGCTGGGAGAGAAACATCATCCCCTGGCACTGAC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC301977), mRNA.					
Rattus norvegicus	RefSeq	GI_62666987-S	ILMN_293357	RGD1565746_PREDICTED	XM_001061869.1	XM_001061869.1		302748	109511887	XM_001061869.1	RGD1565746_predicted	XP_001061869.1	ILMN_1368931	0004230072	S	1176	GTGGGGCCCAAGAGCCTATGCTGAAACCAGCCTCGTAAAAGTGATGGACT				Xq22	PREDICTED: Rattus norvegicus similar to Melanoma-associated antigen B1 (MAGE-B1 antigen) (predicted) (RGD1565746_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665580-S	ILMN_56251	LOC499400	XM_574715.1	XM_574715.1		499400	62665580	XM_574715.1	LOC499400	XP_574715.1	ILMN_1348792	0004060139	S	987	GCGATGAGGAAGCAGAGAGGATGTCGTGTTCTAACTCCTTCTAAAGCACA				20p12	PREDICTED: Rattus norvegicus similar to RT1 class I, M5 (LOC499400), mRNA.					
Rattus norvegicus	RefSeq	GI_16758871-S	ILMN_263793	CDH17	NM_053977.1	NM_053977.1		117048	16758871	NM_053977.1	Cdh17	NP_446429.1	ILMN_1361578	0005420091	S	3382	CCAGCTTGGCTATGGTGTAGACCCTGGGGAGGTATCAAATACAACTGCCG	5	+	26099093-26099142	5q13	Rattus norvegicus cadherin 17 (Cdh17), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence ISS]; The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence IEA]	Catalysis of the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement [goid 5427] [evidence ISS]; Catalysis of the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement [goid 5427] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13162301-S	ILMN_295459	DCTN1	NM_024130.1	NM_024130.1		29167	13162301	NM_024130.1	Dctn1	NP_077044.1	ILMN_1370728	0006350577	S	4150	AGTGCACGGCCACCTCAGCCACTCCCGGGTTGAACCACATGCTAACTTCT	4	+	117409855-117409904	4q34	Rattus norvegicus dynactin 1 (Dctn1), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence IDA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence TAS]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_50355946-S	ILMN_287437	LMNA	NM_001002016.1	NM_001002016.1		60374	50355946	NM_001002016.1	Lmna	NP_001002016.1	ILMN_1374095	0003390059	S	2865	GTCGGTGGAGGGCAGTATTAAGTGGGATTGGGGAGAGAGTGAGGGAAAGG	2	-	180595882-180595931	2q34	Rattus norvegicus lamin A (Lmna), transcript variant 2, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope. They are classified as lamins A, B and C [goid 5638] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IDA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nuclear membrane [goid 6998] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nuclear membrane [goid 6998] [evidence TAS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647467-S	ILMN_280057	LOC500199	XM_001065864.1	XM_001065864.1		500199	109472159	XM_001065864.1	LOC500199	XP_001065864.1	ILMN_1351163	0001170487	S	2272	CGCAAGGTGCACATCTGGCCAATTTTTTGCCAAGACAGCAACAAGCACTG	4	-	105160146-105160195	4q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810422B04 (LOC500199), mRNA.					
Rattus norvegicus	RefSeq	GI_62655696-S	ILMN_282686	RGD1563547_PREDICTED	XM_001079112.1	XM_001079112.1		360478	109489716	XM_001079112.1	RGD1563547_predicted	XP_001079112.1	ILMN_1374412	0006200397	S	292	CCGGGAAGGAAAAGCCCAAGGGTGTGGATAACTTGGCCCTGGAACCTTAA				10q12	PREDICTED: Rattus norvegicus RGD1563547 (predicted) (RGD1563547_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262183-S	ILMN_63335	ARHGAP4	XM_579669.1	XM_579669.1		246249	62667449	XM_579669.1	Arhgap4	XP_579669.1	ILMN_1365270	0000510019	S	6627	GAGCTCAAGTCTGCCTCACCCGTGTCATACACACACATGCTTCACACAAC				Xq37	PREDICTED: Rattus norvegicus Rho GTPase activating protein 4 (Arhgap4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence NAS]	Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62638634-S	ILMN_299822	RGD1560516_PREDICTED	XM_579909.1	XM_579909.1		499038	62638634	XM_579909.1	RGD1560516_predicted	XP_579909.1	ILMN_1357324	0006290463	S	348	ACAAGAACTGGACTGTCCAAGCAACGCTACTATTGCGGGACCTCCACTGT	1	-	50856453-50856502	1q12	PREDICTED: Rattus norvegicus RGD1560516 (predicted) (RGD1560516_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758697-S	ILMN_267006	MAPK1	NM_053842.1	NM_053842.1		116590	16758697	NM_053842.1	Mapk1	NP_446294.1	ILMN_1349290	0006770519	S	1075	GTTGAACAGGCTCTGGCCCACCCGTACCTGGAGCAGTATTATGACCCAAG	11	-	85976169-85976218	11q23	Rattus norvegicus mitogen activated protein kinase 1 (Mapk1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; A cell projection part that is part of an axon [goid 33267] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The directed movement of a MAP kinase to the nucleus upon activation [goid 189] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEP]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; The chemical reactions and pathways involving cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives [goid 19858] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEP]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEP]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IC ]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence TAS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence TAS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA];  [goid 16908] [evidence ISS]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]	Erk2	Erk2
Rattus norvegicus	RefSeq	GI_27545411-S	ILMN_270033	LOC286989	NM_173323.1	NM_173323.1		286989	27545411	NM_173323.1	LOC286989	NP_775445.1	ILMN_1369070	0002100138	S	1633	GGAAGGCTGTGATCTGTGGTCGTGATGGGCATGACTACTCCCTTTATTGC	14	+	22522539-22522588	14p21	Rattus norvegicus UDP-glucuronosyltransferase (LOC286989), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605797-S	ILMN_290409	RNF167	NM_001008361.1	NM_001008361.1		360554	56605797	NM_001008361.1	Rnf167	NP_001008362.1	ILMN_1354625	0002850301	S	1766	GAACCCAGCCTTATCCTTTTGAGGGGGCTAGAAGCCATAGGGACATGGTC	10	+	57531225-57531274	10q24	Rattus norvegicus ring finger protein 167 (Rnf167), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1305972; MGC94514	RGD1305972; MGC94514
Rattus norvegicus	RefSeq	GI_62642773-S	ILMN_60506	LOC497749	XM_579689.1	XM_579689.1		497749	62642773	XM_579689.1	LOC497749	XP_579689.1	ILMN_1374652	0001980129	S	1421	AAGGTCGGACTCTTTTACTTTGCATAGCTCACTCATTTGAATGGGGTTGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_171991 (LOC497749), mRNA.					
Rattus norvegicus	RefSeq	GI_40538871-S	ILMN_279918	MDGA2	NM_199269.1	NM_199269.1		314180	40538871	NM_199269.1	Mdga2	NP_954890.1	ILMN_1349546	0006290113	S	3235	GAAGATATTCTTGGCCTGGGTACAAAAGAGCCCTTCAGGTGCTTTTGTGG	6	-	88155477-88155526	6q24	Rattus norvegicus MAM domain containing glycosylphosphatidylinositol anchor 2 (Mdga2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The process whereby neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21522] [evidence IEP]		Mdga2	Mdga2
Rattus norvegicus	RefSeq	GI_57114267-S	ILMN_269497	V1RA7	NM_001008950.1	NM_001008950.1		494295	57114267	NM_001008950.1	V1ra7	NP_001008950.1	ILMN_1357386	0002320270	S	807	GTATTGTGTGCAGATTCCTGTAGCCCATGGCTATGCTGCATTCAGTCCTC	4	-	123960553-123960602	4q34	Rattus norvegicus vomeronasal 1 receptor, A7 (V1ra7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649664-S	ILMN_63825	MPL_PREDICTED	XM_345572.2	XM_345572.2		366455	62649664	XM_345572.2	Mpl_predicted	XP_345573.2	ILMN_1371199	0002120541	S	1424	CAGGCTTAACGGCCCCACCTACCAAGGTCCAACCCAGCGAAAAGCCCAAA				5q36	PREDICTED: Rattus norvegicus myeloproliferative leukemia virus oncogene (predicted) (Mpl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638702-S	ILMN_62562	LOC502253	XM_577713.1	XM_577713.1		502253	62638702	XM_577713.1	LOC502253	XP_577713.1	ILMN_1354237	0006940133	S	1354	TGCCAGTCCTTGGCACCTTGCGGAGCCCCTTAGAGGATAAGCCCATCCCC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502253), mRNA.					
Rattus norvegicus	RefSeq	GI_62664913-S	ILMN_271635	IRX3_PREDICTED	XM_001061997.1	XM_001061997.1		307721	109508455	XM_001061997.1	Irx3_predicted	XP_001061997.1	ILMN_1359218	0005910021	S	2463	GAAAAGGACGAAAGGAAGAAATAAAGCCAGTCCCCCCTCGGCCCTCCCCC				19p11	PREDICTED: Rattus norvegicus Iroquois related homeobox 3 (Drosophila) (predicted) (Irx3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648629-S	ILMN_285541	CCNE2_PREDICTED	XM_001064132.1	XM_001064132.1		362485	109476038	XM_001064132.1	Ccne2_predicted	XP_001064132.1	ILMN_1358432	0003360538	S	1322	AAGGAGGGCAGTTGTCACCAGTGTGTAATGGAGGCATTATGACACCACCG				5q13	PREDICTED: Rattus norvegicus cyclin E2 (predicted), transcript variant 2 (Ccne2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644256-A	ILMN_297464	SNX7	NM_001012083.1	NM_001012083.1		310815	58865735	NM_001012083.1	Snx7	NP_001012083.1	ILMN_1376559	0003840397	S	1221	CAGACACGGCCGAGGAGAACATCCGCTACTATGAGCAGTGCCTTGCTACA	2	-	214163078-214163090:214181656-214181692	2q41	Rattus norvegicus sorting nexin 7 (Snx7), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648458-S	ILMN_69859	LOC296935	XM_238342.4	XM_238342.4		296935	109472861	XM_238342.4	LOC296935	XP_238342.4	ILMN_1367744	0003290162	S	1488	GAAGAAAATGGAAGAAAGCTCCCGGCCCTCTACCCCACAGAGATCAGCTC	4|NW_047702.1	+	204616-204665		PREDICTED: Rattus norvegicus similar to leiomodin 2 (cardiac) (LOC296935), mRNA.					
Rattus norvegicus	RefSeq	GI_16758137-S	ILMN_302504	POMT1	NM_053406.1	NM_053406.1		84430	16758137	NM_053406.1	Pomt1	NP_445858.1	ILMN_1355718	0001770735	S	2558	ACTACACCTAAGGCAGGAGGAGCAGCCAGTGAAGGAGTGAAGTCCAGGCC	3	+	11366312-11366361	3p11	Rattus norvegicus protein-O-mannosyltransferase 1 (Pomt1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: dolichyl phosphate D-mannose + protein = dolichyl phosphate + O-D-mannosylprotein [goid 4169] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659574-S	ILMN_57239	TNN_PREDICTED	XM_222794.4	XM_222794.4		304913	109498083	XM_222794.4	Tnn_predicted	XP_222794.2	ILMN_1363912	0000380072	S	5267	CTGAGGCAAGCTGAGGCTTGTTGTCTCCTGGTTCTCCTGGTTTTGAGGGG	13	-	75503345-75503394	13q22	PREDICTED: Rattus norvegicus tenascin N (predicted) (Tnn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47131211-S	ILMN_277619	RGD1302996	NM_213610.1	NM_213610.1		294231	47131211	NM_213610.1	RGD1302996	NP_998775.1	ILMN_1360418	0006400181	S	2153	GGGTGAAGGCCGCACTGAAGACTGCTACGCACAAAAGGAGGTGGAGGTAG	20	+	3009571-3009620	20p12	Rattus norvegicus hypothetical protein MGC:15854 (RGD1302996), mRNA.				MGC15854; MGC108866	MGC15854; MGC108866
Rattus norvegicus	RefSeq	GI_62659138-S	ILMN_48485	LOC301650	XM_237455.3	XM_237455.3		301650	62659138	XM_237455.3	LOC301650	XP_237455.3	ILMN_1356433	0006130541	S	4108	GCACAACCAGCAAGTGCAAACGGGAATACTTCATCTGAGATGCTACAGGG				13p13	PREDICTED: Rattus norvegicus similar to contactin associated protein-like 5 isoform 1 (LOC301650), mRNA.					
Rattus norvegicus	RefSeq	GI_62638864-S	ILMN_47899	RGD1565485_PREDICTED	XM_574353.2	XM_574353.2		365179	109458107	XM_574353.2	RGD1565485_predicted	XP_574353.1	ILMN_1349702	0000430019	S	1043	TAGCACCCTCCTGTGGACTGACAAGCTCTGGGAGGCATGGGCTGTGGAAA	1	-	67563473-67563520:67563521-67563522	1q12	PREDICTED: Rattus norvegicus similar to zinc finger protein 524 (predicted) (RGD1565485_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666182-S	ILMN_62094	LOC502441	XM_577922.1	XM_577922.1		502441	62666182	XM_577922.1	LOC502441	XP_577922.1	ILMN_1354386	0001850671	S	494	GTCAGGATATGCTACCAGGGAGCAGCTGGGCCAAAGCACAGGATGTGGCA					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502441), mRNA.					
Rattus norvegicus	RefSeq	GI_62653291-S	ILMN_68382	RGD1564241_PREDICTED	XM_343353.3	XM_343353.3		363022	109483117	XM_343353.3	RGD1564241_predicted	XP_343354.2	ILMN_1374390	0002120692	S	1415	GTGGTGAATGCGGGAAAGTCTTCCATGCTTCCTCGTACCTGCGCAGACAC	8	+	19616032-19616081	8q13	PREDICTED: Rattus norvegicus similar to zinc finger protein 426 (predicted) (RGD1564241_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664967-S	ILMN_70412	LOC291926	XM_214645.3	XM_214645.3		291926	62664967	XM_214645.3	LOC291926	XP_214645.3	ILMN_1355950	0002650551	S	2638	GCAGAGTTGCTCTTCCAATGGGGGCCATGATGCAGAGACAGAAAAAGAGG				19q11	PREDICTED: Rattus norvegicus similar to Myosin light chain kinase 2, skeletal/cardiac muscle (MLCK2) (predicted) (LOC291926), mRNA.					
Rattus norvegicus	RefSeq	GI_6981433-S	ILMN_301301	PTGER3	NM_012704.1	NM_012704.1		24929	6981433	NM_012704.1	Ptger3	NP_036836.1	ILMN_1359377	0002360333	S	862	CCAGCTTATGGGGATCATGTGTGTACTGTCCGTCTGCTGGTCGCCGCTAT	2	+	255681552-255681601	2q45	Rattus norvegicus prostaglandin E receptor 3 (subtype EP3) (Ptger3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The directed movement of bicarbonate into, out of, within or between cells [goid 15701] [evidence IEA]; The directed movement of bicarbonate into, out of, within or between cells [goid 15701] [evidence ISS]; The process of renal water excretion [goid 30146] [evidence IEA]; The process of renal water excretion [goid 30146] [evidence ISS]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; The directed movement of bicarbonate into, out of, within or between cells [goid 15701] [evidence IEA]; The process of renal water excretion [goid 30146] [evidence IEA]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; The directed movement of bicarbonate into, out of, within or between cells [goid 15701] [evidence IEA]; The process of renal water excretion [goid 30146] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Rep3; rEP3a; rEP3b	Rep3; rEP3a; rEP3b
Rattus norvegicus	RefSeq	GI_12083600-S	ILMN_277108	SCG2	NM_022669.1	NM_022669.1		24765	12083600	NM_022669.1	Scg2	NP_073160.1	ILMN_1360716	0001980500	S	1701	CTCCCAGGAAATGGAGAAACTGGCCAAGGTGAGCAAAAGGATCCCTGCAG	9	-	78763201-78763250	9q34	Rattus norvegicus secretogranin II (chromogranin C) (Scg2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence TAS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The movement of an eosinophil in response to an external stimulus [goid 48245] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence ISS]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence ISS]	Chcg	Chcg
Rattus norvegicus	RefSeq	GI_62657213-S	ILMN_264212	LIMD2	NM_001025715.1	NM_001025715.1		360646	71043771	NM_001025715.1	Limd2	NP_001020886.1	ILMN_1368023	0003190044	S	1018	GCCTTGGGGGACTGGGGGTCCCTTGCATCACAAAGCTAAAACTCTTGCTA	10	-	95552548-95552597	10q32.1	Rattus norvegicus LIM domain containing 2 (Limd2), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1309967; MGC112915	RGD1309967; MGC112915
Rattus norvegicus	RefSeq	GI_62650239-S	ILMN_262507	CEBPZ_PREDICTED	XM_001059054.1	XM_001059054.1		362686	109478910	XM_001059054.1	Cebpz_predicted	XP_001059054.1	ILMN_1357009	0006450079	S	3069	CAAACAGCTCAAGTGGGAAGCTGAGCGTGATGATTGGCTCCACAACAGAG				6q11	PREDICTED: Rattus norvegicus CCAAT/enhancer binding protein zeta (predicted) (Cebpz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639081-S	ILMN_59513	CEACAM12_PREDICTED	XM_341798.2	XM_341798.2		361516	62639081	XM_341798.2	Ceacam12_predicted	XP_341799.2	ILMN_1357665	0000460301	S	1389	GGGGAGAAAGTGGTGCCCAGGTAGGCTTCAGGGTCTATGCAGTCACCAAC				1q21	PREDICTED: Rattus norvegicus CEA-related cell adhesion molecule 12 (predicted) (Ceacam12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647557-S	ILMN_49346	LOC502816	XM_578315.1	XM_578315.1		502816	62647557	XM_578315.1	LOC502816	XP_578315.1	ILMN_1367138	0003850114	S	40	GGATTTCAGCCTCAAGAGGGAACATTGTGTTGACTCAGTCTCCAGCCACC					PREDICTED: Rattus norvegicus similar to monoclonal antibody kappa light chain (LOC502816), mRNA.					
Rattus norvegicus	RefSeq	GI_62645564-S	ILMN_65051	LOC499864	XM_575206.1	XM_575206.1		499864	62645564	XM_575206.1	LOC499864	XP_575206.1	ILMN_1363184	0004920136	S	843	GCACAGCTTGACCCCGAAGGTCCCGGAAGAGAAGCCGGAAGCAATGTTAC				3q35	PREDICTED: Rattus norvegicus similar to CDNA sequence BC052040 (LOC499864), mRNA.					
Rattus norvegicus	RefSeq	GI_62647649-S	ILMN_53471	LOC500218	XM_575569.1	XM_575569.1		500218	62647649	XM_575569.1	LOC500218	XP_575569.1	ILMN_1373154	0006450440	S	578	CCTAAGGATAATAGGTATAGAAGAGAGTGAAGACTCCCAGCGCAAAGGAC					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC500218), mRNA.					
Rattus norvegicus	RefSeq	GI_62647249-S	ILMN_292583	LOC500124	NM_001024329.1	NM_001024329.1		500124	66730267	NM_001024329.1	LOC500124	NP_001019500.1	ILMN_1357991	0003120706	S	1720	GACCTCTCTTGAATTGGATTTCTCGAGCTGGCGTGCCCAAGCATCATACC	4	-	78837572-78837621	4q24	Rattus norvegicus similar to RIKEN cDNA 4921507P07 (LOC500124), mRNA.					
Rattus norvegicus	RefSeq	GI_62639588-S	ILMN_266258	SIGLEC10_PREDICTED	XM_001080316.1	XM_001080316.1		292844	109461807	XM_001080316.1	Siglec10_predicted	XP_001080316.1	ILMN_1354036	0001940601	S	2644	CCCACAGAGTGGACCAGTTCTCAAGCCAGGAGGTTACAAGTTTGGTTGCC				1q22	PREDICTED: Rattus norvegicus sialic acid binding Ig-like lectin 10 (predicted) (Siglec10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758991-S	ILMN_299336	VEGFC	NM_053653.1	NM_053653.1		114111	16758991	NM_053653.1	Vegfc	NP_446105.1	ILMN_1349830	0003780682	S	1254	GCATTGTGATCCGGGACTGTCATTTAGTGAAGAGGTGTGTCGCTGTGTCC	16	-	40624699-40624748	16p11	Rattus norvegicus vascular endothelial growth factor C (Vegfc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation by a protein of one or more of its own residues [goid 31954] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43536] [evidence IMP]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence TAS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IEA]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence IMP]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with vascular endothelial growth factor receptor 3 [goid 43185] [evidence IMP]; Interacting selectively with vascular endothelial growth factor receptor 3 [goid 43185] [evidence IEA]; Interacting selectively with vascular endothelial growth factor receptor 3 [goid 43185] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57012393-A	ILMN_283549	H2-M11	NM_001008850.1	NM_001008850.1		294213	57012393	NM_001008850.1	H2-M11	NP_001008850.1	ILMN_1376394	0002810129	S	699	CCCTCCTGAAATTACCCTGACCTGGCAGAGAGATGGATGCAATCAGATGC	20	-	1978864-1978913	20p12	Rattus norvegicus histocompatibility 2, M region locus 11 (H2-M11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62658843-S	ILMN_268039	LOC689820	XM_001072149.1	XM_001072149.1		689820	109495863	XM_001072149.1	LOC689820	XP_001072149.1	ILMN_1368179	0006860020	S	2100	CTTGAAGCATCAGGGTGGGCAGTCAGACTAGAGGCGGGCCGGGAAAAGCA	12	-	33253371-33253420	12q15	PREDICTED: Rattus norvegicus similar to SET domain-containing protein (LOC689820), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62644159-S	ILMN_62218	HBXIP_PREDICTED	XM_215674.4	XM_215674.4		295357	109465431	XM_215674.4	Hbxip_predicted	XP_215674.4	ILMN_1358078	0002690180	S	552	ACGTCAGTTAGGAGTGTGGTGGCCTTGTCTGGGCTTTTGTCACTCTGCTC	2	+	202758803-202758852	2q34	PREDICTED: Rattus norvegicus hepatitis B virus x interacting protein (predicted) (Hbxip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758045-S	ILMN_297487	CTBP2	NM_053335.1	NM_053335.1		81717	16758045	NM_053335.1	Ctbp2	NP_445787.1	ILMN_1352443	0001780039	S	3376	GAGGAAATCCCCATCAAGGCTAGTCCCTTTGGTCTTCAGGGGCTGGTGCC	1	-	192463805-192463854	1q41	Rattus norvegicus C-terminal binding protein 2 (Ctbp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643450-S	ILMN_264560	FREM2_PREDICTED	XM_001057556.1	XM_001057556.1		310418	109466658	XM_001057556.1	Frem2_predicted	XP_001057556.1	ILMN_1372697	0000460288	S	9617	GGAGCACTGAGCCCATGATGTCCCCGCAGAGCCACTACAATGACAGCTCA				2q26	PREDICTED: Rattus norvegicus Fras1 related extracellular matrix protein 2 (predicted) (Frem2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662601-I	ILMN_64567	FBXO8_PREDICTED	XM_573904.1	XM_573904.1		306436	62662601	XM_573904.1	Fbxo8_predicted	XP_573904.1	ILMN_1375869	0001940068	S	1452	TTAGACCTGACCCTACAAACCATACCAGCTTCCCATTTCTCTGAACTTGG				16p11	PREDICTED: Rattus norvegicus F-box only protein 8 (predicted) (Fbxo8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664124-S	ILMN_64845	RGD1559877_PREDICTED	XM_344657.3	XM_344657.3		364828	109506375	XM_344657.3	RGD1559877_predicted	XP_344658.2	ILMN_1372512	0001850484	S	218	AGGCAGTGAGTGCACGAAGAGAGTCCATCAAGGCCCTCGTGAAGCCTCAC	18	+	16159368-16159417	18p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1559877_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639050-S	ILMN_269802	CEACAM3	NM_012702.1	NM_012702.1		24926	6978644	NM_012702.1	Ceacam3	NP_036834.1	ILMN_1349122	0006380025	S	2766	TGATCCACAGTTGGGTGTAACATTCATAGCAGAGACCCAACTCTGGACTC	1	+	77541536-77541585	1q21	Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule 3 (Ceacam3), mRNA.				Cgm1; RATCEAA; MGC114355	Cgm1; RATCEAA; MGC114355
Rattus norvegicus	RefSeq	GI_62667327-S	ILMN_301711	MGC114520	NM_001024890.1	NM_001024890.1		315915	67846057	NM_001024890.1	MGC114520	NP_001020061.1	ILMN_1372878	0000460056	S	535	GCATGCTGCCAGGAGCTGGTGGTGAAAATTAAACTGCCCGATACAAACCC	X	+	127836473-127836493:127854679-127854707	Xq35	Rattus norvegicus similar to hypothetical protein E230019M04 (MGC114520), mRNA.					
Rattus norvegicus	RefSeq	GI_62717748	ILMN_68625	LOC363395	XM_343725.2	XM_343725.2		363395	62717748	XM_343725.2	LOC363395	XP_343726.2	ILMN_1650201	0005220377	S	57	CCCCACCACTTCCAAAGCAATATGCAAGTGCAAAATTTCAGGCCAAATCC					PREDICTED: Rattus norvegicus similar to SPEER 2 (LOC363395), mRNA.					
Rattus norvegicus	RefSeq	GI_62647103-S	ILMN_50614	MGAM_PREDICTED	XM_231714.4	XM_231714.4		312272	109471956	XM_231714.4	Mgam_predicted	XP_231714.4	ILMN_1367768	0002650152	S	5899	CCTGGCATAACTACACCTTCCCCTACAAGTCCTACTACTGCTAACACTAG	4	+	68491148-68491197	4q22	PREDICTED: Rattus norvegicus maltase-glucoamylase (predicted) (Mgam_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543339-S	ILMN_58852	NR4A2	NM_019328.3	NM_019328.3		54278	77539061	NM_019328.3	Nr4a2	NP_062201.2	ILMN_1355906	0000840546	S	1740	TGGGGGATTGAACCGACCCAACTACCTGTCCAAACTGTTGGGGAAGCTCC	3	-	38866987-38867036	3q12	Rattus norvegicus nuclear receptor subfamily 4, group A, member 2 (Nr4a2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process by which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10467] [evidence ISS]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]; Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region [goid 21952] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nurr1	Nurr1
Rattus norvegicus	RefSeq	GI_62654269-S	ILMN_48720	RGD1560367_PREDICTED	XM_236624.4	XM_236624.4		315997	109483877	XM_236624.4	RGD1560367_predicted	XP_236624.3	ILMN_1369506	0001050035	S	3457	CCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGAGGGGGTCTGG	8	-	113028192-113028218:113029270-113029292	8q32	PREDICTED: Rattus norvegicus similar to Rbm6 protein (predicted) (RGD1560367_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646710-S	ILMN_54802	LOC499987	XM_575341.1	XM_575341.1		499987	62646710	XM_575341.1	LOC499987	XP_575341.1	ILMN_1370647	0003440056	S	833	CCAGGGAGCCCAAGCAAGCCCTGGTCCGAATAATAGGAAGCCGGACTGTG					PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (LOC499987), mRNA.					
Rattus norvegicus	RefSeq	GI_21245089-S	ILMN_302440	BMF	NM_139258.1	NM_139258.1		246142	21245089	NM_139258.1	Bmf	NP_640351.1	ILMN_1364943	0002450066	S	1745	TCTGTACCTAGTGGGATACGGGAAGAAGCGAGGACAGTGGCTTTGTCAGC	3	-	104966941-104966990	3q35	Rattus norvegicus Bcl2 modifying factor (Bmf), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666429-S	ILMN_52576	LOC503421	XM_578959.1	XM_578959.1		503421	62666429	XM_578959.1	LOC503421	XP_578959.1	ILMN_1360842	0002810021	S	75	GGGAAAATTGCTGAAACAGTAGAGGGGGAAGTTGGCAAGATGACGCACAG				Xq11	PREDICTED: Rattus norvegicus similar to Acidic ribosomal phosphoprotein P0 (LOC503421), mRNA.					
Rattus norvegicus	RefSeq	GI_62642023-S	ILMN_262778	RGD1562070_PREDICTED	XM_001078463.1	XM_001078463.1		365429	109463683	XM_001078463.1	RGD1562070_predicted	XP_001078463.1	ILMN_1374934	0002970673	S	77	CGCCCGATAAGTGTTACCACGGCAAAACCGGAGGAGTCTACAAAGTCACG				1q51	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L21 (predicted) (RGD1562070_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659255-S	ILMN_267436	RGD1306212_PREDICTED	XM_001057323.1	XM_001057323.1		360839	109498575	XM_001057323.1	RGD1306212_predicted	XP_001057323.1	ILMN_1348880	0000610026	S	1215	GTACCTGGACGGCAGCATCGGTGTCCTGATCGGTCTCACCATCTTTGCCT				13q12	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp566N034 (predicted) (RGD1306212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658364-S	ILMN_266660	LOC689004	XM_001069149.1	XM_001069149.1		689004	109494986	XM_001069149.1	LOC689004	XP_001069149.1	ILMN_1365008	0002450180	S	837	GATGCTGCACTCGGGGCTGTGGAATGATGCGCCATGTGCCAATGAGAGAG	12	+	2416856-2416905	12p12	PREDICTED: Rattus norvegicus similar to C-type lectin domain family 4, member g (LOC689004), mRNA.					
Rattus norvegicus	RefSeq	GI_62649496-S	ILMN_54627	JMJD2A_PREDICTED	XM_233441.3	XM_233441.3		313539	62649496	XM_233441.3	Jmjd2a_predicted	XP_233441.3	ILMN_1355854	0001570377	S	3537	AGGGAGAGCGTATGTCCAGGGGTACTCGGCTTCCCCGAAAAGTTCAAGGG				5q36	PREDICTED: Rattus norvegicus jumonji domain containing 2A (predicted) (Jmjd2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644118-S	ILMN_270616	DCLRE1B	NM_001025687.1	NM_001025687.1		310745	71043609	NM_001025687.1	Dclre1b	NP_001020858.1	ILMN_1355443	0001740577	S	1532	CCAGAAACCAGGGAGGAAATTGGCTTAGGGTCCCCATTGTGGTCAGGGGG	2	-	199028121-199028170	2q34	Rattus norvegicus DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) (Dclre1b), mRNA.				MGC114481	MGC114481
Rattus norvegicus	RefSeq	GI_34935658-S	ILMN_62063	LOC299478	XM_234757.2	XM_234757.2		299478	34935658	XM_234757.2	LOC299478	XP_234757.2	ILMN_1369004	0002030014	S	227	GGGAAGTGGAGGTACTTACTACAATGAGAAGTTCAAGGGCAAGGCCACAC				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region 93G7 precursor (LOC299478), mRNA.					
Rattus norvegicus	RefSeq	GI_62659988-S	ILMN_267437	PLXNA2_PREDICTED	XM_001070296.1	XM_001070296.1		289392	109499314	XM_001070296.1	Plxna2_predicted	XP_001070296.1	ILMN_1367820	0004780433	S	8406	CTGGCCTTCCACACCAAGCCAAAGTGTTTGCTCCTCATAGCACCCAAAGC				13q27	PREDICTED: Rattus norvegicus plexin A2 (predicted) (Plxna2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642648-S	ILMN_264701	RGD1564729_PREDICTED	XM_574811.1	XM_574811.1		499486	62642648	XM_574811.1	RGD1564729_predicted	XP_574811.1	ILMN_1355196	0001660066	S	1012	AGCGCTGTCAATCCTTTGGTCTACCTTTTCTTCCAGACGGGTGACTGCCG	2	-	3097894-3097943	2q11	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 150 (predicted) (RGD1564729_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657327-S	ILMN_57779	USH1G_PREDICTED	XM_221106.2	XM_221106.2		287819	62657327	XM_221106.2	Ush1g_predicted	XP_221106.2	ILMN_1370610	0005550603	S	3156	CAGAGGGAAGAACCCTCAAAGACCTCTGCGTTCTGTTTGGAGGTGCACTG				10q32.2-q32.3	PREDICTED: Rattus norvegicus Usher syndrome 1G (autosomal recessive) (predicted) (Ush1g_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62543520-S	ILMN_284745	MTVR2	NM_001015013.1	NM_001015013.1		309170	62543520	NM_001015013.1	Mtvr2	NP_001015013.1	ILMN_1368601	0004780168	S	925	GGCCCAAAGCGTCTTGCACTCCCGTTTGCATCTCTGGGACTGGGATGAGT	1	-	208355433-208355482	1q43	Rattus norvegicus mammary tumor virus receptor 2 (Mtvr2), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC112670	MGC112670
Rattus norvegicus	RefSeq	GI_62639029-S	ILMN_276138	RGD1305050_PREDICTED	XM_001055138.1	XM_001055138.1		365191	109460963	XM_001055138.1	RGD1305050_predicted	XP_001055138.1	ILMN_1363676	0007100102	S	789	GGCTGATGCTGATGCAGACCTGGAAGAGAGGCTCAAGAACCTTCGCAGGG				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500016L11 (predicted) (RGD1305050_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923993-S	ILMN_62816	CFLAR	NM_057138.2	NM_057138.2		117279	76563917	NM_057138.2	Cflar	NP_476479.1	ILMN_1357130	0003190451	S	1568	GCTGACATAGGCATGTCCTGCCAGGAGGGCTCATGGCTTCTATTTTCTGC	9	+	57334728-57334777	9q31	Rattus norvegicus CASP8 and FADD-like apoptosis regulator (Cflar), transcript variant 2, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Flip; MGC108616	Flip; MGC108616
Rattus norvegicus	RefSeq	GI_62653933-S	ILMN_54726	LOC503197	XM_578721.1	XM_578721.1		503197	62653933	XM_578721.1	LOC503197	XP_578721.1	ILMN_1349485	0001170184	S	236	GCTCCCCTATGACTCCCCTACCCCAGGAAAAAATAAACCCGAGAAGGGGG					PREDICTED: Rattus norvegicus similar to ATP synthase lipid-binding protein, mitochondrial precursor (ATP synthase proteolipid P1) (ATPase protein 9) (ATPase subunit C) (LOC503197), mRNA.					
Rattus norvegicus	RefSeq	GI_62666335-S	ILMN_69461	LOC365607	XM_574805.1	XM_574805.1		365607	62666335	XM_574805.1	LOC365607	XP_574805.1	ILMN_1374347	0003520139	S	607	CTTGCAGATTGAACACAGACAGGCCTTCGAGTGGGTTGAAGAGTGGTAGA					PREDICTED: Rattus norvegicus similar to Pitpnc1 protein (LOC365607), mRNA.					
Rattus norvegicus	RefSeq	GI_55926195-S	ILMN_278967	KLRD1	NM_012745.2	NM_012745.2		25110	55926195	NM_012745.2	Klrd1	NP_036877.1	ILMN_1357215	0006110288	S	872	GAAGAAAGAAGTGCCTGGCTATGGGAGGATGGCACATTTCCCTCAAAAGA	4	+	166877305-166877354	4q42	Rattus norvegicus killer cell lectin-like receptor, subfamily D, member 1 (Klrd1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Cd94	Cd94
Rattus norvegicus	RefSeq	GI_13540647-I	ILMN_278684	STXBP5	NM_030843.1	NM_030843.1		81022	13540647	NM_030843.1	Stxbp5	NP_110470.1	ILMN_1375508	0004210563	I	3787	CATAAAAGGGATGCACACTGCTGACAGCGTCTTTCCCAGCACAATCATGC				1p13	Rattus norvegicus syntaxin binding protein 5 (tomosyn) (Stxbp5), transcript variant m, mRNA.	A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IDA]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_30387639-A	ILMN_278684	STXBP5	NM_030843.1	NM_030843.1		81022	13540647	NM_030843.1	Stxbp5	NP_110470.1	ILMN_1376692	0003190722	A	3557	CAGGCTGGCCCTCGACGAAAGAGGACAGAAGCTCAGCGACTTGGAAGAGA	1	-	4428361-4428361:4430153-4430201	1p13	Rattus norvegicus syntaxin binding protein 5 (tomosyn) (Stxbp5), transcript variant m, mRNA.	A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IDA]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56090280-S	ILMN_287913	RASSF1	NM_001007754.1	NM_001007754.1		363140	56090280	NM_001007754.1	Rassf1	NP_001007755.1	ILMN_1354445	0004730446	S	1487	GCCTCCTGTTGGGAAAGGGATGGGGGTGTGAGAGTCATCATCAGGGTCTG	8	+	112809915-112809964	8q32	Rattus norvegicus Ras association (RalGDS/AF-6) domain family member 1 (Rassf1), transcript variant 2, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94319	MGC94319
Rattus norvegicus	RefSeq	GI_62667589-S	ILMN_267486	AFF2_PREDICTED	XM_001054673.1	XM_001054673.1		293922	109462294	XM_001054673.1	Aff2_predicted	XP_001054673.1	ILMN_1364228	0006860050	S	4246	GCATGACCAATCTTGTCCGCTATGTTCGCCAGGGACTGTGTTGGCTGCGC				Xq37	PREDICTED: Rattus norvegicus AF4/FMR2 family, member 2 (predicted) (Aff2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658784-S	ILMN_268667	CALN1_PREDICTED	XM_001071918.1	XM_001071918.1		363909	109497100	XM_001071918.1	Caln1_predicted	XP_001071918.1	ILMN_1353118	0004210070	S	1366	TGCTGATCGCAGCCAACCAGATCCTGCGGAGCGGCATGGAGTAGCAGTCT				12q13	PREDICTED: Rattus norvegicus calneuron 1 (predicted) (Caln1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643569-S	ILMN_53911	LOC362221	XM_342526.2	XM_342526.2		362221	62643569	XM_342526.2	LOC362221	XP_342527.2	ILMN_1352050	0002480110	S	389	ACGTAGGCAAATGGTTGGAACTGGAAAATATCCTGAGTGAGGTAACCCAA					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC362221), mRNA.					
Rattus norvegicus	RefSeq	GI_62648814-S	ILMN_265209	NFX1	XM_001059469.1	XM_001059469.1		313166	109476267	XM_001059469.1	Nfx1	XP_001059469.1	ILMN_1349451	0007040162	S	3613	TACAGCCAAGCATGAATGTGTCAGGACCCCAGTCTCTCCAGCCCACAGGC				5q22	PREDICTED: Rattus norvegicus nuclear transcription factor, X-box binding 1, transcript variant 3 (Nfx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45347] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45347] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650479-S	ILMN_282016	LOC686162	XM_001072718.1	XM_001072718.1		686162	109479136	XM_001072718.1	LOC686162	XP_001072718.1	ILMN_1355788	0006290100	S	753	CAGGTGAATGTCCTGGCAGCTCAAACAGGGCAGACTGAAGTCCCACTAGG					PREDICTED: Rattus norvegicus similar to mesogenin 1 (LOC686162), mRNA.					
Rattus norvegicus	RefSeq	GI_62638726-S	ILMN_63620	LOC292367	XM_217957.3	XM_217957.3		292367	62638726	XM_217957.3	LOC292367	XP_217957.3	ILMN_1367198	0003120601	S	3433	TCCTACAACAGCAGGCTCTCCCGGGAGCCCCATTAGAGGATAAGCCCATC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC292367), mRNA.					
Rattus norvegicus	RefSeq	GI_62718748-S	ILMN_57581	LOC503409	XM_578948.1	XM_578948.1		503409	62718748	XM_578948.1	LOC503409	XP_578948.1	ILMN_1360615	0003870048	S	13	AGTCAGGGCAGCTGATAAAAGCTGAGCTCTTTCTCGATTCCGTGGGTGGT					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503409), mRNA.					
Rattus norvegicus	RefSeq	GI_62659798-S	ILMN_69802	LOC498294	XM_573522.1	XM_573522.1		498294	62659798	XM_573522.1	LOC498294	XP_573522.1	ILMN_1359714	0004810156	S	835	CTCAGTGGGAAAGCCCTACCCTGCCCCAGAAACTGCCCTAGTTCTCAGTC				13q26	PREDICTED: Rattus norvegicus similar to hypothetical protein D230039L06 (LOC498294), mRNA.					
Rattus norvegicus	RefSeq	GI_62644158-S	ILMN_62130	KCNA10_PREDICTED	XM_227577.4	XM_227577.4		295360	109465421	XM_227577.4	Kcna10_predicted	XP_227577.2	ILMN_2038994	0002340482	S	1415	CAACTGTAGGCTATGGTGACATGTGCCCGACCACCCCAGGAGGGAAGATT	2	+	202652720-202652769	2q34	PREDICTED: Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 10 (predicted) (Kcna10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27694649-S	ILMN_62130	KCNA10_PREDICTED	XM_227577.4	XM_227577.4		295360	109465421	XM_227577.4	Kcna10_predicted	XP_227577.2	ILMN_2039515	0004570689	S	1355	AGCCAGAGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCTGTG	2	+	202652660-202652709	2q34	PREDICTED: Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 10 (predicted) (Kcna10_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.36522	ILMN_50458	GJA12_PREDICTED	XM_573100.2	XM_573100.2		497913	109488198	XM_573100.2	Gja12_predicted	XP_573100.1	ILMN_1530446	0004540301	S	310	TTCTGGGTCTTCCAGATAGTGGTCATCTCTACACCTTCTGTCATGTACCT	10	-	45482137-45482186	10q22	PREDICTED: Rattus norvegicus gap junction protein, alpha 12, 47kDa (predicted) (Gja12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656141-S	ILMN_50458	GJA12_PREDICTED	XM_573100.2	XM_573100.2		497913	109488198	XM_573100.2	Gja12_predicted	XP_573100.1	ILMN_1356904	0003440451	S	1311	TCAGGAACAGCTCGCCACTAAGCCCAGGGTTGGCTCTGAGAAGGGCAGTA	10	-	45481136-45481185	10q22	PREDICTED: Rattus norvegicus gap junction protein, alpha 12, 47kDa (predicted) (Gja12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641063-S	ILMN_67829	LOC499221	XM_574514.1	XM_574514.1		499221	62641063	XM_574514.1	LOC499221	XP_574514.1	ILMN_1362020	0001780020	S	1237	GCCCATGCTGGTAGCTGAGTAGTCCCTTTCCTACCTCACCAGTGTCGGTG					PREDICTED: Rattus norvegicus similar to Sorting nexin 12 (LOC499221), mRNA.					
Rattus norvegicus	RefSeq	GI_62646517-S	ILMN_291013	DATF1_PREDICTED	XM_001060072.1	XM_001060072.1		362286	109471497	XM_001060072.1	Datf1_predicted	XP_001060072.1	ILMN_1361090	0005550301	S	6496	TGGGCCACATCAGAGTTCCGAGAAGGCAAGGGCCATGAATATAGGAGCCC				3q43	PREDICTED: Rattus norvegicus death associated transcription factor 1 (predicted), transcript variant 3 (Datf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665072-S	ILMN_52918	LOC502197	XM_577658.1	XM_577658.1		502197	62665072	XM_577658.1	LOC502197	XP_577658.1	ILMN_1353796	0004730739	S	10	TAGTCCAGTTGTGCTTGCTCTACCTGTCCAAGGGGCTTCTGGCAAGGCTG					PREDICTED: Rattus norvegicus similar to integrin alpha 6 subchain (LOC502197), mRNA.					
Rattus norvegicus	RefSeq	GI_62078570-S	ILMN_295495	DTWD1	NM_001013921.1	NM_001013921.1		296119	62078570	NM_001013921.1	Dtwd1	NP_001013943.1	ILMN_1351423	0000870347	S	1220	GGCCAAACAGAAGCCCATCCATTAGTTCTGCAAGCCCTCTTGACCTGTGC	3	+	113594643-113594667:113594668-113594692	3q36	Rattus norvegicus DTW domain containing 1 (Dtwd1), mRNA.				RGD1311144	RGD1311144
Rattus norvegicus	RefSeq	GI_51854238-S	ILMN_294130	LRRC36	XM_001072518.1	XM_001072518.1		361394	109508679	XM_001072518.1	Lrrc36	XP_001072518.1	ILMN_1368654	0002650048	S	2124	CCGGGAAATCGCTCCTGCCTCCTGAGAAGACTCATCCTTTGGGGAGATTG				19q11	PREDICTED: Rattus norvegicus LRRC36 homolog (human) (Lrrc36), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62078624-S	ILMN_295181	ANKRD46	NM_001013948.1	NM_001013948.1		299982	62078624	NM_001013948.1	Ankrd46	NP_001013970.1	ILMN_1355517	0002650278	S	1972	CAAAGGTACCCCTAGCTGACTGTCCTTCTACAAGCCTCTCGCTCACTGAC	7	-	71986462-71986511	7q22	Rattus norvegicus ankyrin repeat domain 46 (Ankrd46), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124899; ank-s; RGD1309382	MGC124899; ank-s; RGD1309382
Rattus norvegicus	RefSeq	GI_62666943-S	ILMN_263228	RGD1560322_PREDICTED	XM_001066848.1	XM_001066848.1		501584	109512011	XM_001066848.1	RGD1560322_predicted	XP_001066848.1	ILMN_1373208	0000450746	S	3455	GGTACGGCCTGAACCCCTTCAGCTTCAACCCAATCACTACCGAGCTTCCA				Xq31	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ39827 (predicted) (RGD1560322_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656839-S	ILMN_265724	RGD1561574_PREDICTED	XM_001081218.1	XM_001081218.1		501715	109491630	XM_001081218.1	RGD1561574_predicted	XP_001081218.1	ILMN_1370120	0004230577	S	156	AGAGAGGAAAACTCTGCGTGACTGTGGCTTCACCAGCGAGGTAGCAAAGG				10q26	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC76322 (predicted) (RGD1561574_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643433-S	ILMN_70363	LOC499613	XM_579985.1	XM_579985.1		499613	62643433	XM_579985.1	LOC499613	XP_579985.1	ILMN_1368305	0003850079	S	1288	CGTGGCGGGTAGGGCAGGAGGCCATGGATTGTGGAGTTGAAGAATCTTGC				2q26	PREDICTED: Rattus norvegicus LOC499613 (LOC499613), mRNA.					
Rattus norvegicus	RefSeq	GI_47576428-S	ILMN_300053	OLR896	NM_001000059.1	NM_001000059.1		288813	47576428	NM_001000059.1	Olr896	NP_001000059.1	ILMN_1353412	0001740152	S	395	CTATTATGAGTCAGAAGGTCTGCACGATGCTAGTCTTTGCTTGCTGGCTG	7	-	3323172-3323221	7q11	Rattus norvegicus olfactory receptor 896 (Olr896), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr896	Olr896
Rattus norvegicus	RefSeq	GI_34932806-S	ILMN_275456	RGD1563873_PREDICTED	XM_001067246.1	XM_001067246.1		313296	109512582	XM_001067246.1	RGD1563873_predicted	XP_001067246.1	ILMN_1357748	0006420025	S	1469	GGAAAGATCCGCGGCCAATCCAGACATGTTTCCTGTGCCCTCTGGAAGGA				Xq11	PREDICTED: Rattus norvegicus similar to WD repeat domain 40B (predicted) (RGD1563873_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576216-S	ILMN_272503	OLR1332	NM_001000477.1	NM_001000477.1		300632	47576216	NM_001000477.1	Olr1332	NP_001000477.1	ILMN_1356596	0003360685	S	886	GCTCTGAAGAAGGCGCTATCTCAAGAGGCCCAGCCTTTGGGGTATAAGGA	8	-	42906233-42906282	8q22	Rattus norvegicus olfactory receptor 1332 (Olr1332), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr8-42915934-42914996_ORF; Olr1332	ratchr8-42915934-42914996_ORF; Olr1332
Rattus norvegicus	RefSeq	GI_47577728-S	ILMN_273471	OLR1264	NM_001000456.1	NM_001000456.1		300583	47577728	NM_001000456.1	Olr1264	NP_001000456.1	ILMN_1353308	0001400204	S	471	GGCCCACACAGGGTGCATGTTGAGGCTGACCTTCTGTAAGGACAACACTG	8	+	41068983-41069032	8q22	Rattus norvegicus olfactory receptor 1264 (Olr1264), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1264	Olr1264
Rattus norvegicus	RefSeq	GI_62660798	ILMN_55874	LOC498411	XM_573658.2	XM_573658.2		498411	109500037	XM_573658.2	LOC498411	XP_573658.2	ILMN_1651180	0000450138	S	757	CTGGACAGCAAGTGGCTCCCACCAAGGCGGTGTGCAATATCGTCAATAAC	14	-	89531778-89531792:89533329-89533363	14q21	PREDICTED: Rattus norvegicus similar to Hus1 homolog (LOC498411), mRNA.					
Rattus norvegicus	RefSeq	GI_62718828-S	ILMN_64887	LOC316919	XM_229488.3	XM_229488.3		316919	62718828	XM_229488.3	LOC316919	XP_229488.3	ILMN_1370200	0000450332	S	837	CACTTTTTTCTTCAGAAAACACCACTTGAGAGACAACTTGGGGGACCACC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC316919), mRNA.					
Rattus norvegicus	RefSeq	GI_47577116-S	ILMN_280578	OLR324	NM_001000246.1	NM_001000246.1		293762	47577116	NM_001000246.1	Olr324	NP_001000246.1	ILMN_1365828	0001580114	S	527	ATTTTTACTGTGACGTCCCACAGGTCCTCAAACTCGCCTGCACTGACACC	1	-	214955355-214955404	1q43	Rattus norvegicus olfactory receptor 324 (Olr324), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-215114361-215113426_ORF; Olr324	ratchr1-215114361-215113426_ORF; Olr324
Rattus norvegicus	RefSeq	GI_62663074-S	ILMN_49064	LOC502105	XM_577548.1	XM_577548.1		502105	62663074	XM_577548.1	LOC502105	XP_577548.1	ILMN_1368708	0002340463	S	110	AGCTGTGCTGGGTAAAGACCGCCGGATAGGAGCAGAGTTCCGCATAACCC					PREDICTED: Rattus norvegicus similar to RNA polymerase I associated factor 53 (LOC502105), mRNA.					
Rattus norvegicus	RefSeq	GI_56090386-S	ILMN_271804	GLTPD1	NM_001007703.1	NM_001007703.1		313771	56090386	NM_001007703.1	Gltpd1	NP_001007704.1	ILMN_1363911	0004060133	S	1545	CTGGTCAGTGCAGCCTGTTCCACAGCTTCTCCAGTATAGTACCGTCAGCC	5	-	172724287-172724336	5q36	Rattus norvegicus glycolipid transfer protein domain containing 1 (Gltpd1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of, within or between cells [goid 46836] [evidence IEA]	Enables the directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of, within or between cells [goid 17089] [evidence IEA]; Interacting selectively with a glycolipid, any compound containing one or more monosaccharide residues bound by a glycosidic linkage to a hydrophobic moiety such as an acylglycerol, a sphingoid, a ceramide (N-acylsphingoid) or a prenyl phosphate [goid 51861] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646631-S	ILMN_51149	LOC497781	XM_579699.1	XM_579699.1		497781	62646631	XM_579699.1	LOC497781	XP_579699.1	ILMN_1371096	0001410324	S	1161	AGACTGTGGGCTCTTCTGAGCAACCTGTTTGCTACCACTTGTGATGGCTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_173139 (LOC497781), mRNA.					
Rattus norvegicus	RefSeq	GI_62656575	ILMN_270634	ERAL1	NM_001013229.1	NM_001013229.1		363646	61557358	NM_001013229.1	Eral1	NP_001013247.1	ILMN_1649841	0002900731	S	1096	GAAGACAGTGATCTGGGAGGAAGGACCGAGTGGGGAGCTAGTGATCCAAC	10	-	64130566-64130584:64130687-64130717	10q25	Rattus norvegicus Era (G-protein)-like 1 (E. coli) (Eral1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109051	MGC109051
Rattus norvegicus	RefSeq	GI_29789302-S	ILMN_296729	FGF4	NM_053809.1	NM_053809.1		116499	29789302	NM_053809.1	Fgf4	NP_446261.1	ILMN_1351738	0007100324	S	378	GGCCATGAGCAGCAGGGGCAAGCTCTTCGGTGTGCCTTTCTTTACCGACG	1	+	205293557-205293606	1q42	Rattus norvegicus fibroblast growth factor 4 (Fgf4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Hst1; Hst	Hst1; Hst
Rattus norvegicus	RefSeq	GI_47576742-S	ILMN_274754	OLR1767	NM_001000491.1	NM_001000491.1		302824	47576742	NM_001000491.1	Olr1767	NP_001000491.1	ILMN_1356925	0000840609	S	563	CTGATGCCTGGATAACCCAATTCTTGGTAGTTGGCTGTGGGGGATTCACC	X	-	136514617-136514666	Xq36	Rattus norvegicus olfactory receptor 1767 (Olr1767), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1767; ratchrX-136588662-136587739_ORF	Olr1767; ratchrX-136588662-136587739_ORF
Rattus norvegicus	RefSeq	GI_13928753-S	ILMN_292320	STAR	NM_031558.1	NM_031558.1		25557	13928753	NM_031558.1	Star	NP_113746.1	ILMN_2040315	0005670379	S	3024	GTAAACGGTCTTAGTCGTCTGGGTCCCCATCACCTGCAAGGACTGCGCTT	16	-	70640600-70640649	16q12.4	Rattus norvegicus steroidogenic acute regulatory protein (Star), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IDA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence IDA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence IEA]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence IEA]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence IMP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence IEA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence TAS]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27675867-S	ILMN_264517	RGD1559781_PREDICTED	XM_001080437.1	XM_001080437.1		294376	109510025	XM_001080437.1	RGD1559781_predicted	XP_001080437.1	ILMN_1350606	0002640671	S	397	GACGATGGACAAGAAGTTCGGCTCCTGCTGGCATGTGGTCATCGGCGAAG				20p11	PREDICTED: Rattus norvegicus similar to Dynein, axonemal, light chain 4 (predicted) (RGD1559781_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28570183-S	ILMN_285616	MYOD1	NM_176079.1	NM_176079.1		337868	28570183	NM_176079.1	Myod1	NP_788268.1	ILMN_1352310	0006550484	S	1799	GCCCCGTGGGCTGTATTTATCTCCGAGGCATGCTGTGTAGTGCAACAAAA	1	+	96912751-96912800	1q22	Rattus norvegicus myogenic differentiation 1 (Myod1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs [goid 381] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into a myoblast cell regardless of its environment; upon determination, the cell fate cannot be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7518] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into a myoblast cell regardless of its environment; upon determination, the cell fate cannot be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7518] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increase the rate of skeletal muscle regeneration [goid 43415] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]	MGC156574	MGC156574
Rattus norvegicus	RefSeq	GI_62657752-S	ILMN_69186	ZFP295_PREDICTED	XM_221622.4	XM_221622.4		304056	109493011	XM_221622.4	Zfp295_predicted	XP_221622.4	ILMN_1354375	0007050520	S	4189	TAGCAGAGCACAGCCTTACCATATCCTAGACCACCATTCACTCCAGAGGC	11	-	37960164-37960213	11q12	PREDICTED: Rattus norvegicus zinc finger protein 295 (predicted) (Zfp295_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639294-S	ILMN_288536	EIF3S12_PREDICTED	XM_001074873.1	XM_001074873.1		292762	109461583	XM_001074873.1	Eif3s12_predicted	XP_001074873.1	ILMN_1349063	0000540537	S	1019	GACAAGTCACCCGGCTTCTGAAAGGGAGGGGATGGTACTTCCTCAACCGG				1q21	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 3, subunit 12 (predicted) (Eif3s12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642201-S	ILMN_53458	LOC499348	XM_574658.1	XM_574658.1		499348	62642201	XM_574658.1	LOC499348	XP_574658.1	ILMN_1351322	0006220402	S	1898	TTTAGAGGTCCGTGCTATCATCACAGGTCATTTGTCTCCACAGCCTGGCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610009F02 (LOC499348), mRNA.					
Rattus norvegicus	RefSeq	GI_14010834-S	ILMN_294790	SRC	NM_031977.1	NM_031977.1		83805	14010834	NM_031977.1	Src	NP_114183.1	ILMN_1349852	0003940044	S	1801	CCATGGCCACAGGCTCTCTGTGCATTCTCTCTGGAGTCGGCCTGCTTCAT	3	+	148170324-148170373	3q42	Rattus norvegicus v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) (Src), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IDA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IEP]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IEA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IDA]; Any process that increases the frequency, rate or extent of insulin receptor signaling [goid 46628] [evidence IDA]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IEP]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance [goid 51385] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence TAS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577112-S	ILMN_286835	OLR323	NM_001000245.1	NM_001000245.1		293761	47577112	NM_001000245.1	Olr323	NP_001000245.1	ILMN_1369551	0001850014	S	830	CCCCTCTGCTCAATCCCTTGATCTACACTCTAAGGAACCAGGAGATGAAG	1	-	214940629-214940678	1q43	Rattus norvegicus olfactory receptor 323 (Olr323), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr323	Olr323
Rattus norvegicus	RefSeq	GI_52345440-S	ILMN_268080	HNRPA3	NM_198132.2	NM_198132.2		362152	52345440	NM_198132.2	Hnrpa3	NP_937765.1	ILMN_1361626	0000540309	S	2400	GCAAGCATGCAGATATGCAAGGTGCTGTGAGGATCGGTAGCCTGTCCAAG	3	+	58360923-58360930	3q23	Rattus norvegicus heterogeneous nuclear ribonucleoprotein A3 (Hnrpa3), mRNA.				hnRNPA3	hnRNPA3
Rattus norvegicus	RefSeq	GI_62078456-S	ILMN_296501	RGD1307851	NM_001013861.1	NM_001013861.1		287741	62078456	NM_001013861.1	RGD1307851	NP_001013883.1	ILMN_1375094	0003060176	S	1208	GTGACCGGGGCATCTATTACTGCTGGCGGCAAGGGTTGAAAATCGCTGGC	10	+	92059058-92059107	10q32.1	Rattus norvegicus similar to RIKEN cDNA 4933439F11 (RGD1307851), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62640751-S	ILMN_52605	LOC361595	XM_346990.2	XM_346990.2		361595	62640751	XM_346990.2	LOC361595	XP_346991.2	ILMN_1356437	0003190519	S	1005	CGCGCGGAGGTGTTTTGCCTGCTGGTACATCTGTGCATCACGTGTGAGTG					PREDICTED: Rattus norvegicus hypothetical LOC361595 (LOC361595), mRNA.					
Rattus norvegicus	RefSeq	GI_62642460-S	ILMN_287409	RGD1562316_PREDICTED	XM_001060298.1	XM_001060298.1		499370	109463979	XM_001060298.1	RGD1562316_predicted	XP_001060298.1	ILMN_1363185	0007000333	S	1406	TCCTGGAGAGGAGCCTGCTGGAGAAGAAACTCCATCACTTCTTCGTGGGC				1q54	PREDICTED: Rattus norvegicus similar to CDNA sequence BC063749 (predicted) (RGD1562316_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652692	ILMN_59294	APOL3_PREDICTED	XM_235461.3	XM_235461.3		315108	62652692	XM_235461.3	Apol3_predicted	XP_235461.2	ILMN_1650673	0004540088	S	1149	TTGTCCAGATCTATGAGAGCCTCCTGGTGCCTTACTGACGGCCGCCCCAA				7q34	PREDICTED: Rattus norvegicus apolipoprotein L, 3 (predicted) (Apol3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662907-S	ILMN_54305	RPS28	XM_344537.2	XM_344537.2		50718	62662907	XM_344537.2	Rps28	XP_344538.2	ILMN_1372269	0004810132	S	395	CATCCGTGGTCCTGGGTCAGTGTGCCCTGAGTTTGACTCTCTGGCTAATC				16q12.4	PREDICTED: Rattus norvegicus ribosomal protein S28 (Rps28), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence TAS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47575934-S	ILMN_263798	OLR1485	NM_001000028.1	NM_001000028.1		287489	47575934	NM_001000028.1	Olr1485	NP_001000028.1	ILMN_1356166	0004850592	S	413	CCAAACTCTGTGTGTGTCTGATGGTACTGTCCTGGGCATTTACTCTGCTG	10	-	60676090-60676139	10q24	Rattus norvegicus olfactory receptor 1485 (Olr1485), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1485	Olr1485
Rattus norvegicus	RefSeq	GI_62647311-S	ILMN_60978	RGD1562269_PREDICTED	XM_575485.2	XM_575485.2		500133	109472068	XM_575485.2	RGD1562269_predicted	XP_575485.1	ILMN_1365499	0007000162	S	2863	GAGGCCGCAGAGTGCTTCGCCGAGATGCTGAGGGTGAACCAGACACTGAA	4	-	83404274-83404323	4q24	PREDICTED: Rattus norvegicus similar to Caspase recruitment domain protein 4 (predicted) (RGD1562269_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661632-S	ILMN_52999	LOC498535	XM_579834.1	XM_579834.1		498535	62661632	XM_579834.1	LOC498535	XP_579834.1	ILMN_1370537	0004570398	S	557	ATTCCCAGAATGGCACAGCCTTCCCCCTTTGCTGGTGTCGGTGCTGAGAG					PREDICTED: Rattus norvegicus LOC498535 (LOC498535), mRNA.					
Rattus norvegicus	RefSeq	GI_47577884-S	ILMN_281219	OLR1164	NM_001000984.1	NM_001000984.1		405340	47577884	NM_001000984.1	Olr1164	NP_001000984.1	ILMN_1353528	0004540053	S	602	TTGTCAGTATCATTGTTGGTTTCCTCCCTGCCTCAGGAATCTTTTACTCC	8	+	18393310-18393359	8q13	Rattus norvegicus olfactory receptor 1164 (Olr1164), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1164	Olr1164
Rattus norvegicus	RefSeq	GI_62656854-S	ILMN_270685	MRPL27_PREDICTED	XM_001081298.1	XM_001081298.1		287635	109491691	XM_001081298.1	Mrpl27_predicted	XP_001081298.1	ILMN_1350680	0003390136	S	474	GGCGACCGGAACCCAGGTCACAGGAGCAAGTGATGATGGAAGTCAAGGGT				10q31	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L27 (predicted) (Mrpl27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663108	ILMN_57969	LOC502106	XM_577549.1	XM_577549.1		502106	62663108	XM_577549.1	LOC502106	XP_577549.1	ILMN_1650587	0002190707	S	1159	TATGGAGTGGCAGCGCATAGAATGCAAGGCTCCCAAGAAGAAGCTGCCCC					PREDICTED: Rattus norvegicus similar to DNMT1 associated protein-1 (LOC502106), mRNA.					
Rattus norvegicus	RefSeq	GI_31342505-S	ILMN_295719	PLOD3	NM_178101.2	NM_178101.2		288583	31342505	NM_178101.2	Plod3	NP_835202.1	ILMN_1364313	0003130551	S	2317	CATCTCCTGAGTGTGTCTATGTGCCTGGGACAGAATGTGCTGGCCCCAAC	12	+	20866914-20866963	12q12	Rattus norvegicus procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 (Plod3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]	The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2 [goid 8475] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93055	MGC93055
Rattus norvegicus	RefSeq	GI_6981421-S	ILMN_289239	PRSS2	NM_012729.1	NM_012729.1		25052	6981421	NM_012729.1	Prss2	NP_036861.1	ILMN_1370652	0001580131	S	494	TGCTGCCCCAAGCTGACTGTGAAGCCTCCTACCCTGGAAAGATCACTGAC	4	+	69092811-69092860	4q22	Rattus norvegicus protease, serine, 2 (Prss2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence TAS]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence ISS]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence ISS]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Ptryss2	Ptryss2
Rattus norvegicus	RefSeq	GI_56605697-S	ILMN_291822	ZUFSP	NM_001008308.1	NM_001008308.1		294390	56605697	NM_001008308.1	Zufsp	NP_001008309.1	ILMN_1350927	0003120358	S	1658	AAGCAAGACATGGAGGCTGGTAGTCTCAGGCAGCTCCGGAAATGTGTGGG	20	-	30104720-30104769	20q11	Rattus norvegicus zinc finger with UFM1-specific peptidase domain (Zufsp), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94667	MGC94667
Rattus norvegicus	RefSeq	GI_34328526-S	ILMN_278365	GABRG2	NM_183327.1	NM_183327.1		29709	34328526	NM_183327.1	Gabrg2	NP_899156.1	ILMN_1369778	0001340753	S	960	AGCCCGGAAGTCTCTGCCCAAGGTCTCCTATGTCACAGCAATGGATCTCT	10	-	27041548-27041597	10q21	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 2 (Gabrg2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence TAS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence TAS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5237] [evidence TAS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655584-S	ILMN_60356	LOC287028	XM_237748.2	XM_237748.2		287028	62655584	XM_237748.2	LOC287028	XP_237748.1	ILMN_1368399	0003130142	S	410	GGCCACAATGAAGTCACAAGCACTGGGCCTCGCTTCCTGCCATGAGAAAC					PREDICTED: Rattus norvegicus hypothetical LOC287028 (LOC287028), mRNA.					
Rattus norvegicus	RefSeq	GI_62718608-S	ILMN_48949	LOC501436	XM_576845.1	XM_576845.1		501436	62718608	XM_576845.1	LOC501436	XP_576845.1	ILMN_1363785	0004670273	S	367	GAAGATCTGAGGATTTAAAGACTTGTGCAGTTTCAATAAATTCTTCTGGC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501436), mRNA.					
Rattus norvegicus	RefSeq	GI_62652543-S	ILMN_273321	LOC497824	XR_009115.1	XR_009115.1		497824	109482586	XR_009115.1	LOC497824		ILMN_1372020	0006770020	S	5658	GTCACCGAGTGTCAACTGCACCCTCTTGCGCCAGGCTACTGTGAGTGACG					PREDICTED: Rattus norvegicus similar to calcium channel, voltage-dependent, alpha 1I subunit (LOC497824), mRNA.					
Rattus norvegicus	RefSeq	GI_62663172-A	ILMN_279264	GKAP1	NM_001012160.1	NM_001012160.1		361202	58865891	NM_001012160.1	Gkap1	NP_001012160.1	ILMN_1376379	0001690292	S	1266	TGGCAGGAAGGGGAAAAGGAACTGCGAGCCGGACCAGTGTAGGTGATCGT	17	+	12354740-12354785:12354786-12354789	17p14	Rattus norvegicus G kinase anchoring protein 1 (Gkap1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667536-S	ILMN_271513	RGD1562991_PREDICTED	XM_001059802.1	XM_001059802.1		293844	109462343	XM_001059802.1	RGD1562991_predicted	XP_001059802.1	ILMN_1373175	0005390402	S	1053	GCTATGGAAGCAGCAAGGAAGCAGGAAGGAGAGCCGAACTGTTGGAGCAG				Xq37	PREDICTED: Rattus norvegicus similar to UCH37-interacting protein 1 (predicted) (RGD1562991_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662728-S	ILMN_55686	ING1L_PREDICTED	XM_214344.4	XM_214344.4		290744	109503368	XM_214344.4	Ing1l_predicted	XP_214344.4	ILMN_1365602	0007100632	S	1036	GGAAGCGTCACCTGTTGAGTTTGCCATAGATCCCAACGAGCCCACCTACT	16	+	47791717-47791766	16q11	PREDICTED: Rattus norvegicus inhibitor of growth family, member 1-like (predicted) (Ing1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645789-S	ILMN_52869	SEMA6D_PREDICTED	XM_230583.4	XM_230583.4		311384	109468739	XM_230583.4	Sema6d_predicted	XP_230583.4	ILMN_1373374	0005550605	S	3588	CCCAGGACGGGACTAAAGAGGACACCATCCTTAAAACCTGATGTGCCACC	3	+	111945867-111945916	3q35	PREDICTED: Rattus norvegicus sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (predicted) (Sema6d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656720-S	ILMN_64988	RGD1305547_PREDICTED	XM_340870.3	XM_340870.3		360589	109488703	XM_340870.3	RGD1305547_predicted	XP_340871.2	ILMN_1360976	0005390463	S	4075	CTTGTCCCTGGTTCATGTTCTCAGCTGTTTGACGTGAAGACAGTGCCAGG	10	-	74439526-74439575	10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810417D08 (predicted) (RGD1305547_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19923686-S	ILMN_295987	CASP2	NM_022522.2	NM_022522.2		64314	19923686	NM_022522.2	Casp2	NP_071967.2	ILMN_1349906	0006380601	S	3250	GGGTCAGTATAGGATGCATGAGTGGTAGACTCTTCACACTTCCCACTGCC				4q23	Rattus norvegicus caspase 2 (Casp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656061-S	ILMN_69352	LOC497901	XM_573087.2	XM_573087.2		497901	109488093	XM_573087.2	LOC497901	XP_573087.2	ILMN_1352458	0005690270	S	147	CCCCATTTTGGAGAGGGGTTTCCCTCAGACCCATTGGTGCCTCATGTCGG	10	-	38884256-38884305	10q22	PREDICTED: Rattus norvegicus similar to Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) (LOC497901), mRNA.		Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62640837-S	ILMN_56736	LOC502343	XM_577809.1	XM_577809.1		502343	62640837	XM_577809.1	LOC502343	XP_577809.1	ILMN_1366941	0002640735	S	2559	GGGCAGTCCTTTGACCTGTTCATGGTTCCAGCTTTACAGTCACCAGCAGG					PREDICTED: Rattus norvegicus LOC502343 (LOC502343), mRNA.					
Rattus norvegicus	RefSeq	GI_12408323-S	ILMN_68168	CPLX1	NM_022864.2	NM_022864.2		64832	62990184	NM_022864.2	Cplx1	NP_074055.1	ILMN_2039998	0005090017	S	1089	TCCACAGCCAGAGGAAACACAGCAATAGAGCTGGAGTGGGTGGGCTCGAC	14	+	1762190-1762239	14p22	Rattus norvegicus complexin 1 (Cplx1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence ISS]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence IDA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IDA]; Enables the directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 5326] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27715522-S	ILMN_271790	LOC298346	XM_001064510.1	XM_001064510.1		298346	109512541	XM_001064510.1	LOC298346	XP_001064510.1	ILMN_1356168	0001400739	S	549	TGTCATCATTTTCCAGGAGCAAGTGGGGGATGGGCTCTTCTGGGATCACC				Xq11	PREDICTED: Rattus norvegicus reproductive homeobox on X chromosome 11 (LOC298346), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653481-S	ILMN_55104	LOC315554	XM_235995.3	XM_235995.3		315554	62653481	XM_235995.3	LOC315554	XP_235995.3	ILMN_1360907	0003140369	S	1564	TGTATCCCGGCAGCAGGTTAAAGGCGTCCGAGCAGCTCACGCCGACATTT				8q21	PREDICTED: Rattus norvegicus similar to CG3045-PA (predicted) (LOC315554), mRNA.					
Rattus norvegicus	RefSeq	GI_6980989-S	ILMN_299825	GRPR	NM_012706.1	NM_012706.1		24938	6980989	NM_012706.1	Grpr	NP_036838.1	ILMN_1349420	0004570709	S	904	GAAGCAGATCGAATCCCGGAAGCGGCTTGCCAAGACAGTACTGGTGTTTG	X	+	51782851-51782900	Xq21	Rattus norvegicus gastrin releasing peptide receptor (Grpr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; Combining with bombesin to initiate a change in cell activity [goid 4946] [evidence TAS]; Combining with bombesin to initiate a change in cell activity [goid 4946] [evidence IEA]; Interacting selectively and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators) [goid 42923] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62659787-S	ILMN_290754	RGD1562609_PREDICTED	XM_001058940.1	XM_001058940.1		289270	109499120	XM_001058940.1	RGD1562609_predicted	XP_001058940.1	ILMN_1371350	0003290082	S	1592	GGGAGCCCCTGAGTGTATAGCTCACTAAGAGACAAGCAAGGCTTCAGACC				13q25	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40773 (predicted) (RGD1562609_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21728409-S	ILMN_263338	LRRC3	NM_145679.1	NM_145679.1		246773	21728409	NM_145679.1	Lrrc3	NP_663712.1	ILMN_1369464	0002900575	S	600	CCTGTGGGAACTGAAGCTGGACCCTGACTCCGTGGATGAAATTGCCTGCC	20	+	11107744-11107793	20p12	Rattus norvegicus leucine rich repeat containing 3 (Lrrc3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981043-S	ILMN_297579	HRH2	NM_012965.1	NM_012965.1		25461	6981043	NM_012965.1	Hrh2	NP_037097.1	ILMN_1351467	0004150068	S	973	AGGAGCCAGAGCCGAGAAGGTAGATGGCAGGAGGAGAAGCCCTTGAAGCT	17	-	16498021-16498070	17p14	Rattus norvegicus histamine receptor H 2 (Hrh2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]	H2R	H2R
Rattus norvegicus	RefSeq	GI_62652892-S	ILMN_69342	LOC366968	XM_345864.2	XM_345864.2		366968	62652892	XM_345864.2	LOC366968	XP_345865.2	ILMN_2038931	0005290521	S	3095	AATGCTTGACTGGGTGTACGAGACGCTGGCGACAGTCCTGTGTCTGAGCC					PREDICTED: Rattus norvegicus similar to cDNA sequence BC023106 (predicted) (LOC366968), mRNA.					
Rattus norvegicus	RefSeq	GI_62644705	ILMN_272785	RGD1308019_PREDICTED	XM_001072253.1	XM_001072253.1		311795	109469424	XM_001072253.1	RGD1308019_predicted	XP_001072253.1	ILMN_1650125	0004560601	S	1168	AACTGCTTCAGAGAGGAGATGGCCGGGGAGGGCTTTTTTCCTGAGCAGGC				3p13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20245 (predicted) (RGD1308019_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663583-S	ILMN_271170	SLC17A2_PREDICTED	XM_001071124.1	XM_001071124.1		306950	109505783	XM_001071124.1	Slc17a2_predicted	XP_001071124.1	ILMN_1366832	0000050017	S	1647	CTCAAGGGGATTTGGTCTTACAGCAGGAATCATCTCGTCCACTACCACCG				17p11	PREDICTED: Rattus norvegicus solute carrier family 17 (sodium phosphate), member 2 (predicted) (Slc17a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341427-S	ILMN_299782	SYNGAP1	NM_181092.2	NM_181092.2		192117	31341427	NM_181092.2	Syngap1	NP_851606.1	ILMN_1350974	0004780278	S	4457	AGCAAGATCCTGATGCAGTACCAAGCCCGCCTGGAGCAGAGCGAGAAGCG				20p12	Rattus norvegicus synaptic Ras GTPase activating protein 1 homolog (rat) (Syngap1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence ISS]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Syngap	Syngap
Rattus norvegicus	RefSeq	GI_57528384-S	ILMN_285513	MITD1	NM_001009714.1	NM_001009714.1		363219	57528384	NM_001009714.1	Mitd1	NP_001009714.1	ILMN_1359720	0004560138	S	849	CAGCGCACACTGGAGAGTGGGTAAAGGATGGAGGCTTGGTCTTCGGTACC	9	-	36828109-36828158	9q21	Rattus norvegicus MIT, microtubule interacting and transport, domain containing 1 (Mitd1), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		MGC109091	MGC109091
Rattus norvegicus	RefSeq	GI_62658947-S	ILMN_273659	FLN29	XM_341086.2	XM_341086.2		114635	62658947	XM_341086.2	Fln29	XP_341087.2	ILMN_1361279	0002360427	S	2336	TAGGAACAAGCTGAGCGGCAGGTATATGGCAGGACTAGAGGCCACCTTGG	12	+	36315512-36315561	12q16	PREDICTED: Rattus norvegicus FLN29 gene product (Fln29), mRNA.					
Rattus norvegicus	RefSeq	GI_62646894-S	ILMN_63636	CTTNBP2	XM_347230.3	XM_347230.3		282587	109471768	XM_347230.3	Cttnbp2	XP_347231.3	ILMN_1350861	0005080435	S	2896	TGTGTAGGCATGGAGGGCTAGAGCCGGAAAGGAGAGACAAGTGCAATCGG	4	-	44165486-44165535	4q21	PREDICTED: Rattus norvegicus cortactin binding protein 2 (Cttnbp2), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_20301951-S	ILMN_277754	SLC2A1	NM_138827.1	NM_138827.1		24778	20301951	NM_138827.1	Slc2a1	NP_620182.1	ILMN_1355214	0006900170	S	2091	GGACACACGAATACTGAACAATGGCTAGGAGGCTTTACCGCAGGAGGCGG	5	+	139718539-139718588	5q36	Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 1 (Slc2a1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEP]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence TAS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IDA]; The directed movement of a xenobiotic, a compound foreign to living organisms, into, out of, within or between cells [goid 42908] [evidence IDA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence TAS]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence IPI]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]; Enables the directed movement of a xenobiotic, a compound foreign to living organisms, into, out of, within or between cells [goid 42910] [evidence IDA]	RATGTG1; Gtg3; GTG1; Glut1; GLUTB	RATGTG1; Gtg3; GTG1; Glut1; GLUTB
Rattus norvegicus	RefSeq	GI_47576304-S	ILMN_273779	OLR1273	NM_001000458.1	NM_001000458.1		300589	47576304	NM_001000458.1	Olr1273	NP_001000458.1	ILMN_1373776	0002100180	S	772	CTCCAGCCTACCCCAAATCCCTGGCTCAATGCAGCTGTTCAGGTCTTGAA	8	-	41182480-41182529	8q22	Rattus norvegicus olfactory receptor 1273 (Olr1273), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1273	Olr1273
Rattus norvegicus	RefSeq	GI_62650477-S	ILMN_281689	RGD1565196_PREDICTED	XM_001072505.1	XM_001072505.1		500629	109479132	XM_001072505.1	RGD1565196_predicted	XP_001072505.1	ILMN_1370470	0004120487	S	1326	AGCCTTGCAGCAATCCTGAGAGATGCATGTGGGCATTTGAAGGACACTGC				6q14	PREDICTED: Rattus norvegicus similar to alcohol dehydrogenase PAN2 (predicted) (RGD1565196_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659646-S	ILMN_263033	TADA1L	XM_001075782.1	XM_001075782.1		360874	109498975	XM_001075782.1	Tada1l	XP_001075782.1	ILMN_1371734	0004780441	S	2024	GGAAACGCTCCCGTGTTCACTCCAGGGAGCAGGATTAGATGCGTGGTTCT				13q23	PREDICTED: Rattus norvegicus transcriptional adaptor 1 (HFI1 homolog, yeast) like (Tada1l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47059196-S	ILMN_284234	RGD1303066	NM_212498.1	NM_212498.1		361789	47059196	NM_212498.1	RGD1303066	NP_997663.1	ILMN_1364736	0000580600	S	1075	AAGCAGGGGGAACAGGAAGCAGAGGATAGGTCGGCCAGTGAGGATCAGGT	20	+	3004670-3004698:3005044-3005064	20p12	Rattus norvegicus similar to RIKEN cDNA 2610110G12 (RGD1303066), mRNA.				FLJ13158; 3110080J08Rik	FLJ13158; 3110080J08Rik
Rattus norvegicus	RefSeq	GI_62644794	ILMN_266405	SURF6	NM_001015014.1	NM_001015014.1		303076	62543514	NM_001015014.1	Surf6	NP_001015014.1	ILMN_1650565	0001690039	S	928	CAGCGCAAGTGGGAGAAGCGTTCGGAGCATGTGGTGGAGAAGATGCAGCA	3	-	5791370-5791419	3p12	Rattus norvegicus surfeit 6 (Surf6), mRNA.	A structure found in the nucleolus, which contains nearly completed preribosomal particles destined for the cytoplasm [goid 1652] [evidence ISS]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]	MGC109125	MGC109125
Rattus norvegicus	RefSeq	GI_62657640-S	ILMN_279162	GART	XM_001068637.1	XM_001068637.1		288259	109493897	XM_001068637.1	Gart	XP_001068637.1	ILMN_1356084	0000050369	S	3075	CTCCAACTAGTGGCCAGTGGGGCTGTGCAGCTGGGAGAAGACGGCAAGAT				11q11	PREDICTED: Rattus norvegicus phosphoribosylglycinamide formyltransferase (Gart), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine [goid 9113] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + 5-phospho-D-ribosylamine + glycine = ADP + phosphate + N1-(5-phospho-D-ribosyl)glycinamide [goid 4637] [evidence IEA]; Catalysis of the reaction: ATP + 5-phospho-D-ribosylamine + glycine = ADP + phosphate + N1-(5-phospho-D-ribosyl)glycinamide [goid 4637] [evidence ISS]; Catalysis of the reaction: ATP + 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine = ADP + phosphate + 5-amino-1-(5-phospho-D-ribosyl)imidazole [goid 4641] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641410-S	ILMN_289689	ZFPN1A5_PREDICTED	XM_001053740.1	XM_001053740.1		309031	109463028	XM_001053740.1	Zfpn1a5_predicted	XP_001053740.1	ILMN_1352726	0002030164	S	1163	GCCCAGCAGTGAACCAAGTGCCCACACCAGTACCCCCAGCATAGGAAACA				1q41	PREDICTED: Rattus norvegicus zinc finger protein, subfamily 1A, 5 (predicted) (Zfpn1a5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576730-S	ILMN_274441	OLR175	NM_001001029.1	NM_001001029.1		405915	47576730	NM_001001029.1	Olr175	NP_001001029.1	ILMN_1372229	0004230154	S	396	GCGCTATGGGACCATCCTGACCAATCCTGTGATTGCCAAAGCTAGTCTTG	1	-	162618837-162618886	1q33	Rattus norvegicus olfactory receptor 175 (Olr175), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr175	Olr175
Rattus norvegicus	Unigene	Rn.11891	ILMN_161189	RN.11891	Rn.11891		Rn.11891		50382910	CO570281			ILMN_1530337	0003390471	S	680	AAATAAAAGGTATTCTAATTGTCGTCCCATTGTAAGTGTACTATTTTCCC					AGENCOURT_28459094 NIH_MGC_247 Rattus norvegicus cDNA clone IMAGE:7326082 5', mRNA					
Rattus norvegicus	RefSeq	GI_29789081-S	ILMN_286916	COIL	NM_017360.1	NM_017360.1		50998	29789081	NM_017360.1	Coil	NP_059056.1	ILMN_1363137	0002340035	S	2187	GTTGGATTTGCCGGGGCGACAGGTTACAGAGTCCTTTCACATCTTCCAGC	10	+	77451946-77451995	10q26	Rattus norvegicus coilin (Coil), mRNA.	The nucleus of the female germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1674] [evidence IEA]; The nucleus of the female germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1674] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence IEA]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence ISS]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IMP]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction that interconverts reduced sulfide groups and oxidized disulfide bonds in a substrate [goid 15036] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction that interconverts reduced sulfide groups and oxidized disulfide bonds in a substrate [goid 15036] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663657-S	ILMN_280480	ARHGAP12_PREDICTED	XM_001055903.1	XM_001055903.1		307016	109505873	XM_001055903.1	Arhgap12_predicted	XP_001055903.1	ILMN_1368216	0003130162	S	3816	TAAAACAGGGTTTGGAAGGTTTTGTTAGAGGGAGGCATGGTCTGTTGAAG				17q12.1	PREDICTED: Rattus norvegicus Rho GTPase activating protein 12 (predicted), transcript variant 3 (Arhgap12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664686-S	ILMN_54851	LOC307239	XM_225740.3	XM_225740.3		307239	62664686	XM_225740.3	LOC307239	XP_225740.3	ILMN_1369380	0000050044	S	6	CGTGATGTATCAGACTGTAGCAGGCTCTCTGGACACTGTTGGAGCAGACT				18q12.3	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 14 (predicted) (LOC307239), mRNA.					
Rattus norvegicus	RefSeq	GI_62647651-S	ILMN_53564	RGD1560707_PREDICTED	XM_575570.2	XM_575570.2		500219	109472212	XM_575570.2	RGD1560707_predicted	XP_575570.1	ILMN_1369683	0001400100	S	1624	CTTTTCACAAAATCATTGCAGGGAGCGTGGCTCTGTTCCTCTCGGTGGCC	4	+	114145188-114145237	4q34	PREDICTED: Rattus norvegicus similar to leucine-rich repeat transmembrane neuronal 4 protein (predicted) (RGD1560707_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14091751-S	ILMN_266423	RALBP1	NM_032067.1	NM_032067.1		84014	14091751	NM_032067.1	Ralbp1	NP_114456.1	ILMN_1353861	0004280670	S	3400	TGCCTTGCTGCACCCGTCAGATGTGCAACACTCATTCTATATTTGCTGGC	9	-	104617560-104617609	9q37	Rattus norvegicus ralA binding protein 1 (Ralbp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IPI]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence ISS]; Any process that activates or increases the activity of the GTPase Cdc42 [goid 43089] [evidence ISS]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence ISS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases [goid 17160] [evidence ISS]; Interacting selectively with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases [goid 17160] [evidence ISS]; Increases the rate of GTP hydrolysis by a GTPase of the Rac family [goid 30675] [evidence ISS]; Increases the rate of GTP hydrolysis by a GTPase of the Rac family [goid 30675] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of a substance [goid 43492] [evidence ISS]; Interacting selectively with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases [goid 48365] [evidence ISS]	MGC108645	MGC108645
Rattus norvegicus	RefSeq	GI_13786167-S	ILMN_276380	KL	NM_031336.1	NM_031336.1		83504	13786167	NM_031336.1	Kl	NP_112626.1	ILMN_1353042	0000430215	S	3313	CACAGTAGGGTCACCGAAGTTTCTACAGCACCCCCGTAAGGAAGACACGG	12	-	3732879-3732928	12p12	Rattus norvegicus Klotho (Kl), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA];  [goid 6112] [evidence ISS];  [goid 6112] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence TAS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]	Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate [goid 4566] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639079	ILMN_59347	LOC499089	XM_574376.1	XM_574376.1		499089	62639079	XM_574376.1	LOC499089	XP_574376.1	ILMN_1650053	0002360348	S	710	GAGAATCTTCGAGCCTTTTTCTGCCCCCCTTTCTACATGCTGTAACCCCC				1q21	PREDICTED: Rattus norvegicus similar to carcinoembryonic antigen-related protein (LOC499089), mRNA.					
Rattus norvegicus	RefSeq	GI_62651006-A	ILMN_283160	HDMCP	NM_001001509.1	NM_001001509.1		299316	48040455	NM_001001509.1	Hdmcp	NP_001001509.1	ILMN_1376545	0002480047	S	1402	CGAGAGAGCCCACGTTCTCACTGACCCAAGGAATCGGTGCAGGGTATCAC	6	+	133197630-133197679	6q32	Rattus norvegicus mitochondrial hepatocellular carcinoma-downregulated carrier protein (Hdmcp), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651121-S	ILMN_298125	RGD1560794_PREDICTED	XR_007933.1	XR_007933.1		299227	109479786	XR_007933.1	RGD1560794_predicted		ILMN_1374270	0003120050	S	957	GAGGGCTGCACCACGGACCAGGCTGTCTCCTGCGACTTTAACCATGATGT				6q31	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560794_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662788-A	ILMN_288767	POLB	NM_017141.1	NM_017141.1		29240	8393997	NM_017141.1	Polb	NP_058837.1	ILMN_1376341	0001690008	S	3040	AGGAAAGGTACGTGGCACTTGGTACACCCCAGCTTAGGGAAAGCCATCGG	16	+	73889894-73889943	16q12.5	Rattus norvegicus polymerase (DNA directed), beta (Polb), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence IEA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]	In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence TAS]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence IEA]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence ISS]; The repair of UV-induced T-T, C-T and C-C dimers [goid 6290] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]	Interacting selectively with damaged DNA [goid 3684] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence TAS]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644728-S	ILMN_283420	RGD1565520_PREDICTED	XR_009158.1	XR_009158.1		499752	109469550	XR_009158.1	RGD1565520_predicted		ILMN_1356589	0004150593	S	315	GTACAGGCCAGAGACAAAGCAGGAGAAGAAACAAAAGCTGCTGGCCCGCG				3p13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1565520_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638706-S	ILMN_62743	LOC502255	XM_577715.1	XM_577715.1		502255	62638706	XM_577715.1	LOC502255	XP_577715.1	ILMN_1365325	0000730133	S	1070	ACAGCATGTGCGTCCCATTGCAGCCCCATTTCCTAGCCTTGATACTGCTG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502255), mRNA.					
Rattus norvegicus	RefSeq	GI_62652116-S	ILMN_52801	LGR5	XM_235149.4	XM_235149.4		299802	109480520	XM_235149.4	Lgr5	XP_235149.4	ILMN_1353918	0002810148	S	2576	AACGGTCCTGTGACTCAACCCAAGCCTTAGTATCCTTTACCCACGCCAGC	7	-	54738249-54738298	7q22	PREDICTED: Rattus norvegicus leucine rich repeat containing G protein coupled receptor 5 (Lgr5), mRNA.					
Rattus norvegicus	RefSeq	Rn.22044	ILMN_301557	COQ9	NM_001035257.1	NM_001035257.1		498909	78214349	NM_001035257.1	Coq9	NP_001030334.1	ILMN_1530525	0001980408	S	1635	ACACCAGTGTGCATTGCAGGATCATTAGTACATTTAGAGTCTGTAAAAAT	19	-	10606102-10606151	19p12	Rattus norvegicus coenzyme Q9 homolog (S. cerevisiae) (Coq9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664821-S	ILMN_301557	COQ9	NM_001035257.1	NM_001035257.1		498909	78214349	NM_001035257.1	Coq9	NP_001030334.1	ILMN_1370640	0006130441	S	1579	GCTGCCTCCCCTAGACAGGTGCCTTTTGGATGGTCATGCTGAACCTGGCA	19	-	10606158-10606207	19p12	Rattus norvegicus coenzyme Q9 homolog (S. cerevisiae) (Coq9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666740-S	ILMN_272577	RGD1564253_PREDICTED	XM_001068090.1	XM_001068090.1		317423	109511669	XM_001068090.1	RGD1564253_predicted	XP_001068090.1	ILMN_1363247	0007040593	S	3801	CCCCTAACTCACCTACCCCAGGACTTTATATATCACCTCTAGCTCTGGCC				Xq21	PREDICTED: Rattus norvegicus similar to Protein CXorf17 homolog (predicted) (RGD1564253_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641718-S	ILMN_275166	RGD1563323_PREDICTED	XM_001069200.1	XM_001069200.1		361702	109463351	XM_001069200.1	RGD1563323_predicted	XP_001069200.1	ILMN_1365214	0003170520	S	1769	CAGAATCTAGCGGGCAAGCAGAAAACAAGAGGCTCAAGAGGAGCAGCCCC				1q42	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22531 (predicted) (RGD1563323_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662158-S	ILMN_284656	RGD1563858_PREDICTED	XM_001057775.1	XM_001057775.1		498575	109503698	XM_001057775.1	RGD1563858_predicted	XP_001057775.1	ILMN_2038868	0005550309	S	672	GGTACAGAGGACGAAGGCCAAGAACCGCTTTTACACAGAACCAGGTCGAA				16p16	PREDICTED: Rattus norvegicus similar to anterior-restricted homeobox protein (predicted) (RGD1563858_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654511-S	ILMN_288771	RGD1305157_PREDICTED	XM_236724.3	XM_236724.3		316090	62654511	XM_236724.3	RGD1305157_predicted	XP_236724.2	ILMN_1371091	0002510152	S	2052	TCACAGGCCGAGGATGATGGAGGGCCTTGCGACTACATTTTCACCTCTGG	8	-	126957408-126957457	8q32	PREDICTED: Rattus norvegicus similar to hypothetical basic protein I-19 (predicted) (RGD1305157_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659578-S	ILMN_297073	RGD1563512_PREDICTED	XM_001073857.1	XM_001073857.1		304916	109498902	XM_001073857.1	RGD1563512_predicted	XP_001073857.1	ILMN_1374304	0001850095	S	3807	GCGCCTGCTTCTACCTTCTGCTCCTAATCAGTTGGTGGGGCACAGGGATA					PREDICTED: Rattus norvegicus similar to mKIAA2025 protein (predicted) (RGD1563512_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27229291-S	ILMN_287625	SLC6A15	NM_172321.1	NM_172321.1		282712	27229291	NM_172321.1	Slc6a15	NP_758824.1	ILMN_1350626	0004540450	S	3660	GGTGGATGAGAGGTTAAGTCCAGATGTGATCGAGGGTTTCCTGGAGTGGC				7q21	Rattus norvegicus solute carrier family 6 (neutral amino acid transporter), member 15 (Slc6a15), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Ntt73	Ntt73
Rattus norvegicus	RefSeq	GI_51036666-S	ILMN_273862	SLC29A1	NM_031684.2	NM_031684.2		63997	51036666	NM_031684.2	Slc29a1	NP_113872.1	ILMN_1350381	0006130273	S	1901	CTGACTGATCCCTGCCTAAGCCAAGCACAAGAGACTCCACAAGGATGGGG	9	+	11014697-11014746	9q12	Rattus norvegicus solute carrier family 29 (nucleoside transporters), member 1 (Slc29a1), nuclear gene encoding mitochondrial protein, mRNA. XM_001065529 XM_001065589	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence IDA]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence ISS]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence ISS]	Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IDA]; Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IEA]; Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	rENT1	rENT1
Rattus norvegicus	RefSeq	GI_62662827-S	ILMN_49546	LOC498652	XM_579843.1	XM_579843.1		498652	62662827	XM_579843.1	LOC498652	XP_579843.1	ILMN_1352535	0002640138	S	588	AGCCAGCTTTCGGGCTTTGTGCTGGGAATTGAGTGTAGGGCCTCATGCAC					PREDICTED: Rattus norvegicus LOC498652 (LOC498652), mRNA.					
Rattus norvegicus	RefSeq	GI_62663770-S	ILMN_268217	LOC683748	XM_001067312.1	XM_001067312.1		683748	109506095	XM_001067312.1	LOC683748	XP_001067312.1	ILMN_1358586	0000870484	S	1217	GCTGGTGCAGAAAGGAGCGATTGAGAAAGAAGTTATGAATCAGGCCCGAC					PREDICTED: Rattus norvegicus similar to modulator of apoptosis 1 (predicted) (LOC683748), mRNA.					
Rattus norvegicus	RefSeq	GI_62645672-S	ILMN_70107	RGD1311457_PREDICTED	XM_230510.4	XM_230510.4		311359	109468718	XM_230510.4	RGD1311457_predicted	XP_230510.4	ILMN_1363361	0007100687	S	43	AGTTGGCCTATCTGCGGCAGCCTATTGCGGCGGCGCGGTGAGATCGAAAT	3	+	108262809-108262822:108263114-108263149	3q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310003F16 (predicted) (RGD1311457_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645927-S	ILMN_277149	ANKRD5_PREDICTED	XM_001081280.1	XM_001081280.1		296184	109470879	XM_001081280.1	Ankrd5_predicted	XP_001081280.1	ILMN_1355870	0006400739	S	2376	GCTGATCAGGAAGAGGGAACTCCGGAGAGAGAGGTTCACATATGAGGTGG				3q36	PREDICTED: Rattus norvegicus ankyrin repeat domain 5 (predicted) (Ankrd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660931-S	ILMN_65355	LOC289855	XM_223723.3	XM_223723.3		289855	62660931	XM_223723.3	LOC289855	XP_223723.3	ILMN_1367167	0000670692	S	1953	GTGACAGGTTGTGTGGAGGAAACTTGGAGATGCTGCAGGCTCGTGTCCTG				14q22	PREDICTED: Rattus norvegicus similar to KIAA1912 protein (predicted) (LOC289855), mRNA.					
Rattus norvegicus	RefSeq	GI_62718800-S	ILMN_63205	LOC367667	XM_346244.2	XM_346244.2		367667	62718800	XM_346244.2	LOC367667	XP_346245.2	ILMN_1362488	0005220692	S	585	CAGTGCTCCTCAGACAGGAAGACCAGTGCTCCTTGGACAGTTGGCCCCAT					PREDICTED: Rattus norvegicus similar to caveolin 1 alpha isoform (LOC367667), mRNA.					
Rattus norvegicus	RefSeq	GI_62657558-S	ILMN_56044	ROBO2	XM_213677.3	XM_213677.3		84409	62657558	XM_213677.3	Robo2	XP_213677.3	ILMN_1353494	0006290605	S	5047	TGGCAGACCCAAGCACAGCTTCTTTCAGAACAGGCAACATCTCCTTAGGG				11p11	PREDICTED: Rattus norvegicus roundabout 2 (Drosophila) (Robo2), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness [goid 30673] [evidence ISS]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IDA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 8046] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47576572-S	ILMN_270053	OLR1652	NM_001001122.1	NM_001001122.1		406035	47576572	NM_001001122.1	Olr1652	NP_001001122.1	ILMN_1363353	0007050026	S	866	GCCTGAGGAACAAAGATGTCAAGCAAGCCCTGAAGAGAAGCAGGCAGAGA	17	+	5505530-5505579	17p14	Rattus norvegicus olfactory receptor 1652 (Olr1652), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1652	Olr1652
Rattus norvegicus	RefSeq	GI_62665814-S	ILMN_67364	LOC365546	XM_345089.2	XM_345089.2		365546	62665814	XM_345089.2	LOC365546	XP_345090.2	ILMN_1364258	0002360086	S	1441	CAGAACCACAGTCCTGGTGACTGGCGGCCATATTTCAGGTGACCCTGGGA				20p12	PREDICTED: Rattus norvegicus similar to chromosome 21 open reading frame 29 (LOC365546), mRNA.					
Rattus norvegicus	RefSeq	GI_62643600-S	ILMN_55440	SAMD7_PREDICTED	XM_226973.4	XM_226973.4		310257	109464705	XM_226973.4	Samd7_predicted	XP_226973.4	ILMN_1359749	0000510373	S	1042	GGAGAAACACTGCCCCTTCTTACAGAACAGCATCTTCGAGGCACCATGGG	2	-	117046764-117046813	2q24	PREDICTED: Rattus norvegicus sterile alpha motif domain containing 7 (predicted) (Samd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641990-S	ILMN_68613	LOC365409	XM_344994.2	XM_344994.2		365409	62641990	XM_344994.2	LOC365409	XP_344995.2	ILMN_1366834	0004200537	S	599	TGCCAGGGCAAACAGTAGTGTGTCTGTGATAGGAGCCAGCCATTGCTCAT					PREDICTED: Rattus norvegicus similar to Gag (LOC365409), mRNA.					
Rattus norvegicus	RefSeq	GI_62643107-S	ILMN_268433	RGD1561504_PREDICTED	XR_008103.1	XR_008103.1		499557	109466239	XR_008103.1	RGD1561504_predicted		ILMN_1368483	0000730019	S	413	AATATCCGGCTAGCATACAGCATACACGGAGAACGTGCTTAAGAGTCCAC				2q22	PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (predicted) (RGD1561504_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652488-S	ILMN_48876	RGD1562236_PREDICTED	XM_235349.4	XM_235349.4		315019	109480747	XM_235349.4	RGD1562236_predicted	XP_235349.1	ILMN_1354727	0002850672	S	1429	CCTGCTTTGGGCTCTGAGGAGGAGAATGGAGAGTCGGCGGTGCACTGATA	7	-	97686800-97686802:97686803-97686849	7q33	PREDICTED: Rattus norvegicus similar to breast cancer membrane protein 101 (predicted) (RGD1562236_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34876520	ILMN_50829	LOC364762	XM_344620.1	XM_344620.1		364762	34876520	XM_344620.1	LOC364762	XP_344621.1	ILMN_1650280	0000060725	S	99	CTCCTTGCTATTGGAAATTGTGGCGGTGATGTCCAGGCTGACCTGGGACC					PREDICTED: Rattus norvegicus similar to isopentenyl-diphosphate delta isomerase 2 (LOC364762), mRNA.					
Rattus norvegicus	RefSeq	GI_18543334-S	ILMN_264438	SLCO1A6	NM_130736.1	NM_130736.1		84608	18543334	NM_130736.1	Slco1a6	NP_570092.1	ILMN_1350962	0003610121	S	2390	TTTCCATACTGGGGGTAATTAGAACTGAAAATATGCCCCCTGGTTGTGTC	4	-	179688227-179688276	4q44	Rattus norvegicus solute carrier organic anion transporter family, member 1a6 (Slco1a6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Slc21a13; Oatp5	Slc21a13; Oatp5
Rattus norvegicus	RefSeq	GI_62640700-S	ILMN_267115	TTC23	NM_001025681.1	NM_001025681.1		308708	71043851	NM_001025681.1	Ttc23	NP_001020852.1	ILMN_1368874	0001660484	S	1823	AGAGCCACATCTGGGGCAGTGAGACCCTGCACAAAGCCTTCCTTATAGGA	1	+	122469799-122469848	1q22	Rattus norvegicus tetratricopeptide repeat domain 23 (Ttc23), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC116076; RGD1310409	MGC116076; RGD1310409
Rattus norvegicus	RefSeq	GI_62652173-S	ILMN_301942	RGD1563000_PREDICTED	XR_009412.1	XR_009412.1		503139	109481967	XR_009412.1	RGD1563000_predicted		ILMN_1350374	0005390435	S	193	AATGGGTTCCTCAACAGCCACAATGAAGCACGACGCAAGGTGCAGCCCCC				7q21	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC26856 (predicted) (RGD1563000_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705498-S	ILMN_290154	GPRASP1	NM_134386.1	NM_134386.1		171407	19705498	NM_134386.1	Gprasp1	NP_599213.1	ILMN_1354368	0000540047	S	6035	GCTTAACCATTTGCCTCCGGTTGTCCTTGTGTTCCCAAGTCATTGACCCT	X|NW_048064.1	+	45545-45594		Rattus norvegicus G protein-coupled receptor associated sorting protein 1 (Gprasp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IPI]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	pips	pips
Rattus norvegicus	RefSeq	GI_62645281-S	ILMN_51146	LOC497774	XM_579505.1	XM_579505.1		497774	62645281	XM_579505.1	LOC497774	XP_579505.1	ILMN_1355378	0000380500	S	2899	GGTTGACTTTCCTGTGCATTCCTGGCTGGCCTCAATTTACAGATCTCCTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031075 (LOC497774), mRNA.					
Rattus norvegicus	RefSeq	GI_13786177-S	ILMN_286526	LYPLA2	NM_031342.1	NM_031342.1		83510	13786177	NM_031342.1	Lypla2	NP_112632.1	ILMN_1353790	0004920278	S	1238	TTGCTGCTGTAGGCTGCCTGCTGCTGGGCAGGCTGGTCAGTGAGGAGGTA	5	-	154750682-154750731	5q36	Rattus norvegicus lysophospholipase 2 (Lypla2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644659-S	ILMN_65315	LOC502608	XM_578096.1	XM_578096.1		502608	62644659	XM_578096.1	LOC502608	XP_578096.1	ILMN_1367143	0005700441	S	0	ATGGACAGCGGCAGCCTGAGCGTGCGCCCTTTGATGGCTTCAGATAACAG					PREDICTED: Rattus norvegicus similar to Msx-2 interacting nuclear target protein (LOC502608), mRNA.					
Rattus norvegicus	RefSeq	GI_62639814-S	ILMN_283076	RGD1565432_PREDICTED	XM_001080929.1	XM_001080929.1		499157	109462010	XM_001080929.1	RGD1565432_predicted	XP_001080929.1	ILMN_1364216	0006770181	S	645	GCATGGCGTGTCGTGGTCCTACGTATATCCCCAGTGTTGAGTATGCTCCC				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1565432_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51854218-S	ILMN_267450	BPI	NM_001004079.1	NM_001004079.1		296321	51854218	NM_001004079.1	Bpi	NP_001004079.1	ILMN_2039054	0004490468	S	1541	TGCGTCGAGGCTTTCCTCTCCCTTTGCCTGCCGGGATTCAGCTCATCAAC	3	+	148995025-148995074	3q42	Rattus norvegicus bactericidal/permeability-increasing protein (Bpi), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IDA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-8 production [goid 32717] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production [goid 32720] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of macrophage activation [goid 43031] [evidence ISS]	Interacting selectively with lipopolysaccharide [goid 1530] [evidence IDA]; Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence TAS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with any part of a Gram-negative bacterial cell [goid 8368] [evidence IDA]	MGC94477	MGC94477
Rattus norvegicus	RefSeq	GI_62718404	ILMN_273310	LOC313934	XM_001067157.1	XM_001067157.1		313934	109479035	XM_001067157.1	LOC313934	XP_001067157.1	ILMN_1650486	0004760136	S	5039	AACAGGAGAGCAAAGGCCCTACCACCCGCCGACTGCTACTGCACGAAGTT					PREDICTED: Rattus norvegicus similar to SH3 domain protein 1B, transcript variant 1 (LOC313934), mRNA.					
Rattus norvegicus	RefSeq	GI_62655759-S	ILMN_287494	PKMYT1_PREDICTED	XM_001053776.1	XM_001053776.1		287101	109490263	XM_001053776.1	Pkmyt1_predicted	XP_001053776.1	ILMN_1353343	0003360451	S	1906	CAGGCCCAGTCAGCCTTGGTGCTTTTAAACCTCTGAACTTCTTGCCCACC				10q12	PREDICTED: Rattus norvegicus protein kinase, membrane associated tyrosine/threonine 1 (predicted) (Pkmyt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542124-S	ILMN_296906	ALOX15	NM_031010.2	NM_031010.2		81639	31542124	NM_031010.2	Alox15	NP_112272.2	ILMN_1371267	0004610600	S	1968	CAGCATGGTGGAAAACAGCGTGGCCATATGAGCATCCCCAGACTCCTGCT	10	-	57186111-57186129:57186130-57186160	10q24	Rattus norvegicus arachidonate 15-lipoxygenase (Alox15), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence IDA]; The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence NAS]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA];  [goid 19372] [evidence IDA]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence TAS]; Any process that decreases cell volume [goid 45794] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,14Z)-(12S)-12-hydroperoxyicosa-5,8,10,14-tetraenoate [goid 4052] [evidence IDA]; Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,14Z)-(12S)-12-hydroperoxyicosa-5,8,10,14-tetraenoate [goid 4052] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: linoleate + O2 = (9Z,11E)-(13S)-13-hydroperoxyoctadeca-9,11-dienoate [goid 16165] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA];  [goid 19870] [evidence TAS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: (5Z,9E,14Z)-(8x,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate + H2O = (5Z,9E,14Z)-(8x,11x,12S)-8,11,12-trihydroxyicosa-5,9,14-trienoate [goid 47977] [evidence IDA]; Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,11Z,13E)-(15S)-15-hydroperoxyicosa-5,8,11,13-tetraenoate [goid 50473] [evidence IDA]	12-LOX; Alox12	12-LOX; Alox12
Rattus norvegicus	RefSeq	GI_62653285-S	ILMN_68133	LOC500953	XM_576365.1	XM_576365.1		500953	62653285	XM_576365.1	LOC500953	XP_576365.1	ILMN_1351498	0001240735	S	391	CTCTTTGATCCAGAGTCTGTTGATGCTACGGCTGTCCTTCTGTACCAATC					PREDICTED: Rattus norvegicus similar to olfactory receptor Olr1191 (LOC500953), mRNA.					
Rattus norvegicus	RefSeq	GI_57114261-S	ILMN_276274	V1RC19	NM_001008945.1	NM_001008945.1		494291	57114261	NM_001008945.1	V1rc19	NP_001008945.1	ILMN_1363566	0005860091	S	406	ACCTTCAGCAGTATCTGGATCTTCTATGTTGTCGCTTATACCAATGTGAG	4	+	85980151-85980200	4q24	Rattus norvegicus vomeronasal 1 receptor, C19 (V1rc19), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647193-S	ILMN_277638	ZFP282_PREDICTED	XM_001053378.1	XM_001053378.1		297065	109473439	XM_001053378.1	Zfp282_predicted	XP_001053378.1	ILMN_1363294	0000940102	S	3838	GGGGTGGCATGCCCCAGGACCCTTGTTTGTGTCAAAAATGGCTTTCCTGC				4q24	PREDICTED: Rattus norvegicus zinc finger protein 282 (predicted) (Zfp282_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262174-S	ILMN_290856	TIMM8A1	NM_053370.2	NM_053370.2		84383	54262174	NM_053370.2	Timm8a1	NP_445822.1	ILMN_1363891	0006450397	S	897	CGGTCTCAAGGTAGAACAGGAAGCGTGAGAATCCAAAGGGCTTTAGTCAT	X	-	121994012-121994061	Xq34	Rattus norvegicus translocase of inner mitochondrial membrane 8 homolog a1 (yeast) (Timm8a1), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence TAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IEA]	The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IDA]; The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the mitochondria inner membrane. Inner membrane proteins are first imported into the matrix space where the matrix-targeting sequence is removed; how these proteins then are incorporated into the inner membrane is not known [goid 45039] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC72748; Ddp1	MGC72748; Ddp1
Rattus norvegicus	RefSeq	GI_62650859-S	ILMN_58122	LOC366286	XM_345492.2	XM_345492.2		366286	62650859	XM_345492.2	LOC366286	XP_345493.2	ILMN_1353492	0003190397	S	2	GGGGGACCAAGAAGCTCTGCAGCTTCAGCCTGAAGCCTGTAATCGCTACA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L27a (LOC366286), mRNA.					
Rattus norvegicus	RefSeq	GI_62663576-S	ILMN_270559	LRRC16_PREDICTED	XM_001070748.1	XM_001070748.1		306941	109505775	XM_001070748.1	Lrrc16_predicted	XP_001070748.1	ILMN_1357120	0003120692	S	4883	TGCAGACCATCAGCAAGCACAGCTAAGAACAGAGTGTGTGAAGCCCAGAT				17p11	PREDICTED: Rattus norvegicus leucine rich repeat containing 16 (predicted) (Lrrc16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978582-S	ILMN_290071	CACNB3	NM_012828.1	NM_012828.1		25297	6978582	NM_012828.1	Cacnb3	NP_036960.1	ILMN_1354834	0003130541	S	2322	GGGGCTCCCTGGCTCGTAGCTGCCACTTGTTAAGTTAGGGTTAGATGAGA	7	+	137394081-137394130	7q36	Rattus norvegicus calcium channel, voltage-dependent, beta 3 subunit (Cacnb3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence TAS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IMP]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15270] [evidence IEA];  [goid 15270] [evidence ISS]	CACH3B	CACH3B
Rattus norvegicus	RefSeq	GI_12621111-S	ILMN_276617	INPPL1	NM_022944.1	NM_022944.1		65038	12621111	NM_022944.1	Inppl1	NP_075233.1	ILMN_1357918	0006200047	S	4542	GTGGGGCAGGACCTCGGCCTTAAAATGCCAGTTTGCCTAGTTCTGGCTGT				1q32	Rattus norvegicus inositol polyphosphate phosphatase-like 1 (Inppl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving myo-inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached [goid 32957] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IDA]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence TAS]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IDA]; Interacting selectively with phosphatidylinositol-3,4,5-triphosphate, the triphosphorylated derivative of phosphatidylinositol [goid 5547] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Ship2	Ship2
Rattus norvegicus	RefSeq	GI_40786472-S	ILMN_285419	MTERFD1	NM_199387.1	NM_199387.1		299514	40786472	NM_199387.1	Mterfd1	NP_955419.1	ILMN_1361207	0003450253	S	844	GCACCATTTCTGTTGAGCTTCTCCGTGGAAAGACTAGATAACAGACTGGG	7	-	67974437-67974486	7q22	Rattus norvegicus MTERF domain containing 1 (Mterfd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]			MGC72611; Cgi12	MGC72611; Cgi12
Rattus norvegicus	RefSeq	GI_18543344-S	ILMN_299720	LCN2	NM_130741.1	NM_130741.1		170496	18543344	NM_130741.1	Lcn2	NP_570097.1	ILMN_1363606	0007040647	S	640	TGAACAGACGGTGAGCGTGGCTGACTGGGATGTGCAGTGGCCTGATGGTT	3	-	11511586-11511633:11511634-11511635	3p11	Rattus norvegicus lipocalin 2 (Lcn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981643-S	ILMN_300727	TFF3	NM_013042.1	NM_013042.1		25563	6981643	NM_013042.1	Tff3	NP_037174.1	ILMN_1374680	0002630121	S	297	CCTGGACTCTTGCTGATGGTAGTGGCCCAGGGTAACACTCACCCCTGATC	20	-	9469972-9470021	20p12	Rattus norvegicus trefoil factor 3, intestinal (Tff3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]	The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]		ITF; TREFOIL	ITF; TREFOIL
Rattus norvegicus	RefSeq	GI_62643796-S	ILMN_65406	RGD1308535_PREDICTED	XM_227419.4	XM_227419.4		295251	109465073	XM_227419.4	RGD1308535_predicted	XP_227419.1	ILMN_1370461	0001580725	S	2034	GCTTCCCCTGGACCTGACTTACTCCATTCCTTGTGGAGCACCAAATACCT	2	+	181632276-181632325	2q34	PREDICTED: Rattus norvegicus similar to Pygopus homolog 2 (predicted) (RGD1308535_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646972-S	ILMN_281307	TSGA14	NM_001025770.1	NM_001025770.1		500069	71043793	NM_001025770.1	Tsga14	NP_001020941.1	ILMN_1372140	0004780064	S	2248	AAGACCTCAGGTAAGGATGAGGCCCATGAAGTCATAGGCAAGGACGAGCC	4	-	57564484-57564533	4q22	Rattus norvegicus testis specific, 14 (Tsga14), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]			MGC112886	MGC112886
Rattus norvegicus	RefSeq	GI_34860253-S	ILMN_270319	RRH_PREDICTED	XM_001076776.1	XM_001076776.1		310869	109467631	XM_001076776.1	Rrh_predicted	XP_001076776.1	ILMN_1358104	0004560538	S	661	GCTAGTAACTGCACTACGCACCTCAACAGAGACTGGGCACACCAGGCCGA				2q43	PREDICTED: Rattus norvegicus retinal pigment epithelium derived rhodopsin homolog (predicted) (Rrh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648513	ILMN_282318	RGD1559717_PREDICTED	XM_001063197.1	XM_001063197.1		297757	109476003	XM_001063197.1	RGD1559717_predicted	XP_001063197.1	ILMN_1650994	0000360338	S	1161	CGGGAATCCTCGATGCCAAGGAACCTGGAAAAAAGTGCGTCGGGCAGAGC				5q11	PREDICTED: Rattus norvegicus similar to RPE-spondin (predicted) (RGD1559717_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649711-S	ILMN_272809	RGD1561149_PREDICTED	XM_001060620.1	XM_001060620.1		500552	109477294	XM_001060620.1	RGD1561149_predicted	XP_001060620.1	ILMN_1365733	0001660035	S	3601	TCCAAGAGCCTGTTTACATGGTGGCGGCTTCAGTCCTTGGTAGCCAGCCC				5q36	PREDICTED: Rattus norvegicus similar to mKIAA1522 protein (predicted) (RGD1561149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078862-S	ILMN_297209	ZCCHC12	NM_001014065.1	NM_001014065.1		313436	62078862	NM_001014065.1	Zcchc12	NP_001014087.1	ILMN_1364338	0000430270	S	1887	CCCAGAACTCTCTACCTTGTGCAACAGTTGTCAACCCTTTGGTGCCTATC	X	-	8729616-8729665	Xq12	Rattus norvegicus zinc finger, CCHC domain containing 12 (Zcchc12), mRNA.		The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650845-S	ILMN_57488	LOC366605	XM_345662.2	XM_345662.2		366605	62650845	XM_345662.2	LOC366605	XP_345663.2	ILMN_1360195	0001580576	S	272	CTCCAGGTTAGTCGTGCTGCACCAGGTGTTCTCTGCAGGCCCAAAAGAAG				6q21	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S25 (LOC366605), mRNA.					
Rattus norvegicus	RefSeq	GI_62649698-A	ILMN_293318	TSSK3	NM_001007650.1	NM_001007650.1		297891	56090248	NM_001007650.1	Tssk3	NP_001007651.1	ILMN_1376495	0003840253	S	677	GGGCATACCCCATGATAGCAAGAAAGGCGATGTCTGGAGCATGGGTGTGG	5	-	148645893-148645942	5q36	Rattus norvegicus testis-specific serine kinase 3 (Tssk3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Tssk-3; Stk22c	Tssk-3; Stk22c
Rattus norvegicus	RefSeq	GI_62660193-S	ILMN_53413	LOC498336	XM_573562.1	XM_573562.1		498336	62660193	XM_573562.1	LOC498336	XP_573562.1	ILMN_1368378	0004570609	S	16	GACCCACTGGAACAGCTGAAAACCTGTAGATAGGAGAAACTACACGCCCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05 (LOC498336), mRNA.					
Rattus norvegicus	RefSeq	GI_62655629-S	ILMN_63558	LOC302899	XM_220122.3	XM_220122.3		302899	62655629	XM_220122.3	LOC302899	XP_220122.3	ILMN_1371078	0005290072	S	2002	AGCCCTCGTGAAGCTCACTCTAGGTACTGTAGGTGGTTTGCTCCCTCCGC				10q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810408E11 (predicted) (LOC302899), mRNA.					
Rattus norvegicus	RefSeq	GI_42475956-S	ILMN_269217	ASS	NM_013157.2	NM_013157.2		25698	42475956	NM_013157.2	Ass	NP_037289.1	ILMN_1361110	0006760440	S	1351	TGAAGGAGTACCATCGCCTTCAGAGCAAGGTCACCGCCAAATAGACCGTG	3	+	10622048-10622089:10622090-10622097	3p12	Rattus norvegicus argininosuccinate synthetase (Ass), mRNA.				ASSA; Ass1	ASSA; Ass1
Rattus norvegicus	RefSeq	GI_62661241-S	ILMN_69191	LOC361026	XM_341302.2	XM_341302.2		361026	62661241	XM_341302.2	LOC361026	XP_341303.1	ILMN_1355482	0002970086	S	343	GGGGAGGCAACGTCCTGGGTCCTAAGTTTGTGGCTCGCATTGCCAAGTTG				13q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC361026), mRNA.					
Rattus norvegicus	RefSeq	GI_62662905-S	ILMN_54217	LSM1_PREDICTED	XM_344536.2	XM_344536.2		364624	62662905	XM_344536.2	Lsm1_predicted	XP_344537.2	ILMN_1366541	0004760132	S	240	ACTCTTTCTGAGGGGCGCAGCATCCGACTTGTGAACGTGAAGTGGCCCAG				16q12.4	PREDICTED: Rattus norvegicus LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621129-A	ILMN_276369	SLIT1	NM_022953.1	NM_022953.1		65047	12621129	NM_022953.1	Slit1	NP_075242.1	ILMN_1376706	0002450068	S	4884	CCGGGTTGCCAAGCCCTCTCCCAAAGTGCCTTGCACAGATAGGCGCTTAA				1q54	Rattus norvegicus slit homolog 1 (Drosophila) (Slit1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; The directed movement of the nucleus to a specific location within a cell [goid 40023] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654978-S	ILMN_268333	RGD1305645_PREDICTED	XM_001060972.1	XM_001060972.1		363225	109487065	XM_001060972.1	RGD1305645_predicted	XP_001060972.1	ILMN_1349662	0002190110	S	339	CTACTACCAGCGTCACTATGATGAAGATGCGGCCATTGGTCCCCGCAGCC				9q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500015O10 (predicted) (RGD1305645_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665005-S	ILMN_288023	RTBND_PREDICTED	XM_001071055.1	XM_001071055.1		304667	109508607	XM_001071055.1	Rtbnd_predicted	XP_001071055.1	ILMN_1370850	0003850373	S	744	CCTGAGGGTGGCAGCTCCTGGCTCCAGTCATTGCTTCAACATCTCCATCT				19q11	PREDICTED: Rattus norvegicus retbindin (predicted) (Rtbnd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639837-S	ILMN_285184	CYFIP1_PREDICTED	XM_001054108.1	XM_001054108.1		308666	109462032	XM_001054108.1	Cyfip1_predicted	XP_001054108.1	ILMN_1373824	0001190022	S	3980	AGCCAGCAGCTGAGGGCTAAGCTCATCAGATCCCAGTAACTGATGGCATG				1q22	PREDICTED: Rattus norvegicus cytoplasmic FMR1 interacting protein 1 (predicted) (Cyfip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577172-S	ILMN_264291	OLR346	NM_001000255.1	NM_001000255.1		293789	47577172	NM_001000255.1	Olr346	NP_001000255.1	ILMN_1365242	0002470121	S	678	GAAATCAGACAAGGGACACCAAAAAGCTTTGTCCACCTGTACCTCCCACC	1	+	216099318-216099367	1q43	Rattus norvegicus olfactory receptor 346 (Olr346), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-216257071-216257997_ORF; Olr346	ratchr1-216257071-216257997_ORF; Olr346
Rattus norvegicus	RefSeq	GI_62666848-S	ILMN_283532	RGD1560603_PREDICTED	XM_001054480.1	XM_001054480.1		501558	109511782	XM_001054480.1	RGD1560603_predicted	XP_001054480.1	ILMN_1366890	0006770164	S	4246	GAAGACCTAAGGTGCCTCAGACTACGTGGTGGTGTCCTCTGTAGGCTCTG				Xq21	PREDICTED: Rattus norvegicus similar to mitogen-activated protein kinase kinase kinase 15 (predicted) (RGD1560603_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645697-I	ILMN_270167	GATM	XM_575224.1	XM_575224.1		81660	62645697	XM_575224.1	Gatm	XP_575224.1	ILMN_1375328	0002360411	S	11	CTCTGGGCGCGGCTACAAAAGCAGCGCGCGCGGCCGCAGGCTGGGAGCTG	3	-	109565433-109565482	3q35	PREDICTED: Rattus norvegicus glycine amidinotransferase (L-arginine:glycine amidinotransferase) (Gatm), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]	The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence TAS]; The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IDA]	Catalysis of the reversible transfer of an amidino group to an acceptor [goid 15067] [evidence IDA]; Catalysis of the reaction: L-arginine + glycine = L-ornithine + guanidinoacetate [goid 15068] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981131-S	ILMN_272291	KLK1L	NM_012593.1	NM_012593.1		24523	6981131	NM_012593.1	Klk1l	NP_036725.1	ILMN_1363030	0006660373	S	689	GCTCTGTCCCATGCGCCAAAACCAACATGCCAGCCATCTACACCAAACTT	1	+	94628725-94628774	1q22	Rattus norvegicus kallikrein 1-like peptidase (Klk1l), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]	Klk1; Klk1c7; RSKG-7	Klk1; Klk1c7; RSKG-7
Rattus norvegicus	RefSeq	GI_62660009-S	ILMN_302763	LOC289378	XM_001066750.1	XM_001066750.1		289378	109499253	XM_001066750.1	LOC289378	XP_001066750.1	ILMN_1368127	0003390347	S	836	AATAGCTTCAGAATCACCCCCTGCAAGCCAAGTCAGCTCAGGGCAGCACT					PREDICTED: Rattus norvegicus similar to B0432.8 (LOC289378), mRNA.			Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters [goid 16888] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560068-S	ILMN_279063	BTC	NM_022256.1	NM_022256.1		64022	11560068	NM_022256.1	Btc	NP_071592.1	ILMN_1372200	0006840619	S	305	TGGACGAACAAACTCCCTCCTGCATCTGTGAGAAAGGCTACTTTGGGGCC	14	+	18231954-18232003	14p22	Rattus norvegicus betacellulin (Btc), mRNA.		The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence IDA]			
Rattus norvegicus	RefSeq	GI_62665121-S	ILMN_298999	POU4F2	XM_001074669.1	XM_001074669.1		171355	109508736	XM_001074669.1	Pou4f2	XP_001074669.1	ILMN_1364006	0005670315	S	2670	GGTGCGTTCTCCACTTGGTGCTTACTCTGCTGGACTCAAAGATTTCACCC				19q11	PREDICTED: Rattus norvegicus POU domain, class 4, transcription factor 2 (Pou4f2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence IEA]; Long distance growth of a single axon process involved in cellular development [goid 48676] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27545413-S	ILMN_300544	LGR4	NM_173328.1	NM_173328.1		286994	27545413	NM_173328.1	Lgr4	NP_775450.1	ILMN_1361081	0002940463	S	2913	CCTGCGACTGTTTTTCCCCATCAACCAAATCACAGTGCTGGCATGGGAGC	3	+	95470456-95470505	3q33	Rattus norvegicus leucine-rich repeat-containing G protein-coupled receptor 4 (Lgr4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence IEA]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence ISS]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence IEA]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence ISS]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with a protein hormone to initiate a change in cell activity [goid 16500] [evidence IEA]	Gpr48	Gpr48
Rattus norvegicus	RefSeq	GI_55741779-S	ILMN_275720	SPG21	XM_001076606.1	XM_001076606.1		300791	109484893	XM_001076606.1	Spg21	XP_001076606.1	ILMN_1349836	0004120167	S	1253	TCCTGCTTTGTAAGACTGCTGCACCTCCGGGTTGGAAGAGGAACACGGTC				8q24	PREDICTED: Rattus norvegicus spastic paraplegia 21 homolog (human) (Spg21), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence ISS]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a CD4, a receptor found on the surface of T cells, monocytes and macrophages [goid 42609] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47606378-S	ILMN_284269	OLR141	NM_001001274.1	NM_001001274.1		293280	47606378	NM_001001274.1	Olr141	NP_001001274.1	ILMN_1350674	0002570041	S	561	CCAACTGCCTTGCGCAGATACTAGGCTTAACAGCATTCTGGGGTTGGCCA	1	-	161856963-161857012	1q32	Rattus norvegicus olfactory receptor 141 (Olr141), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr141	Olr141
Rattus norvegicus	RefSeq	GI_62641552-S	ILMN_296489	STK32C_PREDICTED	XM_001057828.1	XM_001057828.1		365381	109463112	XM_001057828.1	Stk32c_predicted	XP_001057828.1	ILMN_1356393	0004230438	S	2038	TAAGGGTGAGGGTTGGGGGAGGGAGCGGGTGGGACGGCAAAGAATGTTTT				1q41	PREDICTED: Rattus norvegicus serine/threonine kinase 32C (predicted) (Stk32c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648449-S	ILMN_68981	LOC502924	XM_578425.1	XM_578425.1		502924	62648449	XM_578425.1	LOC502924	XP_578425.1	ILMN_1353795	0006660288	S	1016	GCAAGGATCAGAGACAGACTCCCACAGTTCTGAAGACGTGGCCATGGAGC					PREDICTED: Rattus norvegicus LOC502924 (LOC502924), mRNA.					
Rattus norvegicus	RefSeq	GI_62655718-S	ILMN_283649	SRL_PREDICTED	XM_001079265.1	XM_001079265.1		302948	109489727	XM_001079265.1	Srl_predicted	XP_001079265.1	ILMN_1357659	0002850048	S	2824	CGGTGAATCAGGGAAGGCACAGGGTTCTAGGGAGGAGAGCGGTAACTGTG				10q12	PREDICTED: Rattus norvegicus sarcalumenin (predicted) (Srl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653535-S	ILMN_286686	GRAMD1B_PREDICTED	XM_001059472.1	XM_001059472.1		300644	109484533	XM_001059472.1	Gramd1b_predicted	XP_001059472.1	ILMN_1362572	0000940731	S	2699	GAGAGCGACGAGAAGAGGAACCGCTATCACTGACAAGGCAGGACCAGGGG				8q22	PREDICTED: Rattus norvegicus GRAM domain containing 1B (predicted) (Gramd1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653569-S	ILMN_291389	RNF26_PREDICTED	XM_001066398.1	XM_001066398.1		300659	109484588	XM_001066398.1	Rnf26_predicted	XP_001066398.1	ILMN_1356405	0006840193	S	1178	AGGCTTGCACCGAGATCCTCATGCGCCACCCCGTTTACCACCGCAACTGC				8q22	PREDICTED: Rattus norvegicus ring finger protein 26 (predicted) (Rnf26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647596-S	ILMN_51062	LOC502839	XM_578339.1	XM_578339.1		502839	62647596	XM_578339.1	LOC502839	XP_578339.1	ILMN_1372852	0000730497	S	621	CAGCAGACTCTATCTGTGACACTTCCTCACCAACCAGAGGACTGGGTTTC					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502839), mRNA.					
Rattus norvegicus	RefSeq	GI_62660955-S	ILMN_66628	LOC498433	XM_573684.1	XM_573684.1		498433	62660955	XM_573684.1	LOC498433	XP_573684.1	ILMN_1349159	0006400746	S	6024	AGGGGGCAAGTCTCGGAATTAACCTAGGACCTGACAATGCTCAACCACAC				14q22	PREDICTED: Rattus norvegicus similar to proteasome (prosome, macropain) activator subunit 4 (LOC498433), mRNA.					
Rattus norvegicus	RefSeq	GI_62659976-S	ILMN_266977	RGD1565408_PREDICTED	XM_001069683.1	XM_001069683.1		360899	109499308	XM_001069683.1	RGD1565408_predicted	XP_001069683.1	ILMN_1369791	0007100139	S	2458	GGGGCTCTCTCGTCATTGATACTGTTGTGTATTTGGCCGACACACTCCTC				13q27	PREDICTED: Rattus norvegicus similar to SERTA domain containing 4 (predicted) (RGD1565408_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651888-S	ILMN_64723	RGD1563028_PREDICTED	XM_343190.3	XM_343190.3		362860	109480407	XM_343190.3	RGD1563028_predicted	XP_343191.2	ILMN_1374816	0004610739	S	2032	CGATCAAGCAGATGACACTGGCGGAAGTCCAAGTGACCACAGAGGCGCAG	7	+	22327475-22327524	7q13	PREDICTED: Rattus norvegicus similar to DIP13 beta (predicted) (RGD1563028_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647551-S	ILMN_49113	LOC502812	XM_578311.1	XM_578311.1		502812	62647551	XM_578311.1	LOC502812	XP_578311.1	ILMN_1358309	0003190750	S	289	GCTCCATGGAGGCTGAAGATGCTGCCATTTATTACTGCCTGCAGTTGACT				4q31	PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC502812), mRNA.					
Rattus norvegicus	RefSeq	GI_62654526-S	ILMN_61529	LOC363169	XM_343508.2	XM_343508.2		363169	62654526	XM_343508.2	LOC363169	XP_343509.2	ILMN_1369059	0005690364	S	2871	CTATGCCTTGGCCACCATGCGGCTGCTTTCCATGTTCTCTAGCCATTGAG				8q32	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp313N0621 (LOC363169), mRNA.					
Rattus norvegicus	RefSeq	GI_62650334-S	ILMN_299402	RGD1562306_PREDICTED	XR_007597.1	XR_007597.1		366548	109478867	XR_007597.1	RGD1562306_predicted		ILMN_1361237	0000430402	S	274	CGCGGACATGACGATCTGGGCTCTCTGATCAAGGCTACGATTGCTGATGT				6q12	PREDICTED: Rattus norvegicus similar to H2A histone family, member Z (predicted) (RGD1562306_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650113-S	ILMN_262502	LOC686457	XM_001074197.1	XM_001074197.1		686457	109477663	XM_001074197.1	LOC686457	XP_001074197.1	ILMN_1352614	0002190133	S	227	GTCTCCCACACAATTACCTGATGACCCATCACCAGGAGCCCTGGCATCGC					PREDICTED: Rattus norvegicus hypothetical protein LOC686457 (LOC686457), mRNA.					
Rattus norvegicus	RefSeq	GI_62655420-S	ILMN_267412	ING5_PREDICTED	XM_001071414.1	XM_001071414.1		363292	109487534	XM_001071414.1	Ing5_predicted	XP_001071414.1	ILMN_1370658	0002360484	S	1495	TGAAGGTCATGGGTCTGTGTGTCTGTGAGCTGATTCTGTCTACTGCGGGC				9q36	PREDICTED: Rattus norvegicus inhibitor of growth family, member 5 (predicted) (Ing5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394223-S	ILMN_300363	RPS6	NM_017160.1	NM_017160.1		29304	8394223	NM_017160.1	Rps6	NP_058856.1	ILMN_1364372	0000780148	S	267	TAGACCTAGGAGAACTGGAGAGAGGAAGCGCAAGTCTGTCCGAGGATGCA	5	-	106167301-106167350	5q32	Rattus norvegicus ribosomal protein S6 (Rps6), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence TAS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]; Several ribosomes bound to one mRNA [goid 5844] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The expansion of a T cell population by cell division during an immune response [goid 2309] [evidence ISS]; Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm [goid 7369] [evidence ISS]; A process that contributes to the formation and maturation of an ovum or female gamete from a primordial female germ cell [goid 22605] [evidence ISS]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; The formation of the constituents of the small ribosomal subunit, their assembly, and their transport to the sites of protein synthesis [goid 42274] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The process aimed at the progression of an erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48821] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661294-S	ILMN_51096	RGD1310110_PREDICTED	XM_341307.3	XM_341307.3		361032	109501547	XM_341307.3	RGD1310110_predicted	XP_341308.3	ILMN_1371044	0000110040	S	2222	CATGTCTGGAATGCTGGTGCCTGTTGGGGTAGGGATAGCCGGAGCCTTGT	15	-	25681231-25681280	15p14	PREDICTED: Rattus norvegicus similar to 3632451O06Rik protein (predicted) (RGD1310110_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.33635	ILMN_285684	MCCC2	NM_001012177.1	NM_001012177.1		361884	58865925	NM_001012177.1	Mccc2	NP_001012177.1	ILMN_1530425	0006770538	S	2049	ATTTTTTACCACCCATAAAATGAAGTGACCGATTTTGCAATTATCCTTTT	2	-	30961651-30961700	2q12	Rattus norvegicus methylcrotonoyl-Coenzyme A carboxylase 2 (beta) (Mccc2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]		Catalysis of the reaction: ATP + 3-methylcrotonyl-CoA + HCO3- = ADP + phosphate + 3-methylglutaconyl-CoA [goid 4485] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758165-S	ILMN_302649	SLC17A6	NM_053427.1	NM_053427.1		84487	16758165	NM_053427.1	Slc17a6	NP_445879.1	ILMN_1348843	0002100044	S	3739	TTTGGTCTGTTTGGTGTCCTGTGCTCTTGACTGGAGGCCCTGCTACTGCG	1	+	101465792-101465841	1q22	Rattus norvegicus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 (Slc17a6), mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence TAS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. It does not occur during cholinergic synaptic transmission. Instead, acetylcholine is enzymatically degraded in the synaptic cleft [goid 1504] [evidence TAS]; The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. It does not occur during cholinergic synaptic transmission. Instead, acetylcholine is enzymatically degraded in the synaptic cleft [goid 1504] [evidence ISS]; The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. It does not occur during cholinergic synaptic transmission. Instead, acetylcholine is enzymatically degraded in the synaptic cleft [goid 1504] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence IDA]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence ISS]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Vglut2; Dnpi	Vglut2; Dnpi
Rattus norvegicus	RefSeq	GI_62655789-A	ILMN_276791	ANXA6	NM_024156.1	NM_024156.1		79125	13994158	NM_024156.1	Anxa6	NP_077070.1	ILMN_1376606	0006590273	S	2184	GAGACTAAGGAAGAAGTGAGGGGTGGAGTTGGACTGTGATCCGGCTGGGG	10	-	40384329-40384378	10q22	Rattus norvegicus annexin A6 (Anxa6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence ISS]; The regulated release of a substance by a cell, a group of cells, or a tissue [goid 46903] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence TAS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]	Anx6	Anx6
Rattus norvegicus	RefSeq	GI_13928975	ILMN_49581	CLDN1	NM_031699.1	NM_031699.1		65129	13928975	NM_031699.1	Cldn1	NP_113887.1	ILMN_1651094	0001170129	S	718	CCCAAGCCAACACCTTCTAGTGGGAAAGACTACGTGTGACAGCGGCGAAG				11q22	Rattus norvegicus claudin 1 (Cldn1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IPI]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665360-S	ILMN_270563	RGD1561069_PREDICTED	XM_001077219.1	XM_001077219.1		498959	109508879	XM_001077219.1	RGD1561069_predicted	XP_001077219.1	ILMN_1374209	0003390373	S	311	TGCCGCGAGGAGTATGGCGTTTGTGAGAACCTGCGGAAGCTGGAGATCAC				19q12	PREDICTED: Rattus norvegicus similar to F-box only protein 31 (predicted) (RGD1561069_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718726-S	ILMN_56486	LOC367646	XM_346238.2	XM_346238.2		367646	62718726	XM_346238.2	LOC367646	XP_346239.2	ILMN_1365766	0004920402	S	969	GTAAGTGTTGGGCCTGGATTGGAAGGATCCACACAGCAGTGTTCTGAAGC					PREDICTED: Rattus norvegicus hypothetical LOC367646 (LOC367646), mRNA.					
Rattus norvegicus	RefSeq	GI_62664745-S	ILMN_58707	LOC502183	XM_577640.1	XM_577640.1		502183	62664745	XM_577640.1	LOC502183	XP_577640.1	ILMN_1364511	0005080315	S	1919	GCAGGTACACACTTACATGGAGCAGGTACACACTCATATGAAGCAGGTGC					PREDICTED: Rattus norvegicus LOC502183 (LOC502183), mRNA.					
Rattus norvegicus	RefSeq	GI_57114233-S	ILMN_275784	V1RB14	NM_001008927.1	NM_001008927.1		494275	57114233	NM_001008927.1	V1rb14	NP_001008927.1	ILMN_1370982	0006370170	S	839	GCTATGCCACCATCAGCCCTTTTGTGTTTATTTTCTCTGACAAGCGCATA	4	+	124013524-124013573	4q34	Rattus norvegicus vomeronasal 1 receptor, B14 (V1rb14), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55742746-S	ILMN_302084	CPA5	NM_001002808.2	NM_001002808.2		408212	55742746	NM_001002808.2	Cpa5	NP_001002808.2	ILMN_1357186	0006420017	S	1832	GCAACTTTGAACAGGCCTCGCTGCCCTAGTGTGGGCTGCTGACTCTTCTG	4	+	57541099-57541148	4q22	Rattus norvegicus carboxypeptidase A5 (Cpa5), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC94525	MGC94525
Rattus norvegicus	RefSeq	GI_6981147-S	ILMN_272795	LEP	NM_013076.1	NM_013076.1		25608	6981147	NM_013076.1	Lep	NP_037208.1	ILMN_1361844	0001740008	S	544	GACCTTAGCCCTGAATGCTGAAGTTTCCAAGACCACCGGGCTCCCGAGGA	4	+	55945909-55945932:55945933-55945958	4q22	Rattus norvegicus leptin (Lep), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IDA]; The physiological process by which dietary excess is sensed by the central nervous system and results in a reduction in food intake and increased energy expenditure [goid 2021] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6111] [evidence ISS];  [goid 6112] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence TAS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 9062] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 9892] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence IEA]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence TAS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption [goid 30300] [evidence ISS]; Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption [goid 30300] [evidence IEA]; Any process that reduces appetite [goid 32099] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; A series of molecular signals generated as a consequence of leptin binding to a cell surface receptor [goid 33210] [evidence IDA]; A series of molecular signals generated as a consequence of leptin binding to a cell surface receptor [goid 33210] [evidence IDA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of myeloid cell differentiation [goid 45639] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of myeloid cell differentiation [goid 45639] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IDA]	obese; OB	obese; OB
Rattus norvegicus	RefSeq	GI_62649193-S	ILMN_262978	RGD1561246_PREDICTED	XM_001053102.1	XM_001053102.1		502959	109476703	XM_001053102.1	RGD1561246_predicted	XP_001053102.1	ILMN_1353712	0002480056	S	184	CCCTTGGAGAAGGTGGTTACCCAGGAGATCCAGAAGATTCAAGCCATCTC				5q32	PREDICTED: Rattus norvegicus similar to put. precursor MuIFN-alpha 5 (predicted) (RGD1561246_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959265-S	ILMN_275732	KHDRBS2	NM_133318.1	NM_133318.1		170843	18959265	NM_133318.1	Khdrbs2	NP_579852.1	ILMN_1351820	0002370451	S	1168	GGGGGATACAGGGAACACCCCTATGGTAGATATTGAAGGTCCTCTTCACC	9	+	31403279-31403312:31403313-31403328	9q21	Rattus norvegicus KH domain containing, RNA binding, signal transduction associated 2 (Khdrbs2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA [goid 8143] [evidence ISS]; Interacting selectively with the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA [goid 8143] [evidence IEA]; Interacting selectively with a sequence of uracil residues in an RNA molecule [goid 8266] [evidence ISS]; Interacting selectively with a sequence of uracil residues in an RNA molecule [goid 8266] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]	Slm1	Slm1
Rattus norvegicus	RefSeq	GI_62645127	ILMN_65758	UPP2_PREDICTED	XM_229938.3	XM_229938.3		295620	62645127	XM_229938.3	Upp2_predicted	XP_229938.3	ILMN_1650048	0004200044	S	1211	CAAGGTGCATTTCTAGCATGTCGGCTCTGAAAGACCAACTCTCCAGGGCC				3q21	PREDICTED: Rattus norvegicus uridine phosphorylase 2 (predicted) (Upp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661225-S	ILMN_67610	LOC501971	XM_577399.1	XM_577399.1		501971	62661225	XM_577399.1	LOC501971	XP_577399.1	ILMN_1368041	0001340592	S	372	GTCTCCATCTTCCCTGAAAGCCACGACTCTGAAGAGAGGATTCTAACCTG					PREDICTED: Rattus norvegicus similar to prostaglandin D receptor (LOC501971), mRNA.					
Rattus norvegicus	RefSeq	GI_18959267-S	ILMN_300022	NDEL1	NM_133320.1	NM_133320.1		170845	18959267	NM_133320.1	Ndel1	NP_579854.1	ILMN_1363106	0006550451	S	1923	GCTCTTGGGCACAGACTGGCTAGAGGTGTTTGTCCCTTGCACCCTTTGGC	10	-	55581500-55581549	10q24	Rattus norvegicus nuclear distribution gene E-like homolog 1 (A. nidulans) (Ndel1), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; Intermediate filament cytoskeletal structure that is made up of neurofilaments. Neurofilaments are specialized intermediate filaments found in neurons [goid 60053] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The proliferation of cells in the inner cell mass [goid 1833] [evidence ISS]; The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons [goid 8090] [evidence ISS]; Generation of a long process from a neuron whose cell body resides in the central nervous system. The process carries efferent (outgoing) action potentials from the cell body towards target cells [goid 21955] [evidence ISS]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]	NUDE2; Nudel	NUDE2; Nudel
Rattus norvegicus	RefSeq	GI_62660259-S	ILMN_59559	LOC497696	XM_579449.1	XM_579449.1		497696	62660259	XM_579449.1	LOC497696	XP_579449.1	ILMN_1372475	0003140332	S	1627	GGCCCCCTTCTGGAATAACCATTCCTGAGTAAGACAAATACTTTGACAGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_021769 (LOC497696), mRNA.					
Rattus norvegicus	RefSeq	GI_62663704-S	ILMN_64042	RGD1564010_PREDICTED	XM_574055.2	XM_574055.2		498769	109505101	XM_574055.2	RGD1564010_predicted	XP_574055.2	ILMN_1370028	0000430451	S	729	GAGCCCCACACTGGAGTTCTTATTCCGAAACAGCCAGAGGACTGTAGGCC	17	+	67143768-67143817	17q12.1	PREDICTED: Rattus norvegicus similar to crinkled (predicted) (RGD1564010_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648608-S	ILMN_54809	LOC297816	XM_232669.3	XM_232669.3		297816	62648608	XM_232669.3	LOC297816	XP_232669.3	ILMN_1350100	0000380138	S	140	TTCAGGCTCGCATGTTCCACCTTCTCTGAACACCGTGCTGGCCATGATGT				5q13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (LOC297816), mRNA.					
Rattus norvegicus	RefSeq	GI_62667115-S	ILMN_280015	P2RY10_PREDICTED	XM_001059224.1	XM_001059224.1		317219	109512187	XM_001059224.1	P2ry10_predicted	XP_001059224.1	ILMN_1368332	0006100148	S	1092	ACTATCTCGCCATGGGAGCTCTGTTACTCGTTCTCGTCTCATGAGCAGGG				Xq31	PREDICTED: Rattus norvegicus purinergic receptor P2Y, G-protein coupled 10 (predicted) (P2ry10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648220-S	ILMN_272643	RGD1563702_PREDICTED	XR_008437.1	XR_008437.1		312746	109474306	XR_008437.1	RGD1563702_predicted		ILMN_1370413	0000610021	S	1838	GACACCCAGTGACCCCAAGACCTTCCTATGTAAAGCAGCTGTGAGTGCTG				4q42	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1563702_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576402-S	ILMN_281377	OLR1566	NM_001000044.1	NM_001000044.1		287973	47576402	NM_001000044.1	Olr1566	NP_001000044.1	ILMN_1364509	0007040451	S	683	TGCAGTCATCGGGGGCTCGGCAAAAGTCCTTTTCTACCTGTTCCTTTCAC	11	+	83540913-83540962	11q23	Rattus norvegicus olfactory receptor 1566 (Olr1566), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr11-83598152-83599093_ORF; Olr1566	ratchr11-83598152-83599093_ORF; Olr1566
Rattus norvegicus	RefSeq	GI_40538866-S	ILMN_301064	GOSR2	NM_031685.2	NM_031685.2		64154	40538866	NM_031685.2	Gosr2	NP_113873.1	ILMN_1363695	0002650563	S	1627	GGGACCAGGTCATTCTCACTTGTCCCAGACGTGATTAAGGCTATGTCAGT	10	-	92831385-92831434	10q32.1	Rattus norvegicus golgi SNAP receptor complex member 2 (Gosr2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]		Magmas	Magmas
Rattus norvegicus	RefSeq	GI_47576034-S	ILMN_285074	OLR1436	NM_001000014.1	NM_001000014.1		287324	47576034	NM_001000014.1	Olr1436	NP_001000014.1	ILMN_1365850	0004480064	S	870	CAGCCTGAGGAACAAGGAGGTCATGGGGGCCCTGAGGAGACATATGGGAT	10	-	44617893-44617942	10q22	Rattus norvegicus olfactory receptor 1436 (Olr1436), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1436	Olr1436
Rattus norvegicus	RefSeq	GI_62665091-A	ILMN_268180	PLA2G15	NM_001004277.2	NM_001004277.2		361401	71534293	NM_001004277.2	Pla2g15	NP_001004277.1	ILMN_1376715	0004560427	S	1002	GTGTAGAGCTGCACTGCCTGTACGGGACCGGTGTTCCCACACCAAACTCT	19	+	36013886-36013935	19q12	Rattus norvegicus phospholipase A2, group XV (Pla2g15), mRNA.				MGC114208; 1-O-acylceramidesynthase	MGC114208; 1-O-acylceramidesynthase
Rattus norvegicus	RefSeq	GI_47578050-S	ILMN_286196	OLR1024	NM_001000068.1	NM_001000068.1		288851	47578050	NM_001000068.1	Olr1024	NP_001000068.1	ILMN_1357755	0000780427	S	524	TCCTTTGTGACACATCACCTGTTCTGCAGCTGTCTTGCACAGACACACGT	7	-	7079633-7079682	7q11	Rattus norvegicus olfactory receptor 1024 (Olr1024), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-7080206-7079283_ORF; Olr1024	ratchr7-7080206-7079283_ORF; Olr1024
Rattus norvegicus	RefSeq	GI_47577694-S	ILMN_284603	OLR576	NM_001000328.1	NM_001000328.1		295814	47577694	NM_001000328.1	Olr576	NP_001000328.1	ILMN_1360764	0001050440	S	858	CCCTCTGATTTACAGCCTGAGGAACAAAGATGTGAAAGAGGCTCTGGCAA	3	-	71339114-71339163	3q24	Rattus norvegicus olfactory receptor 576 (Olr576), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr576	Olr576
Rattus norvegicus	RefSeq	GI_62663460-S	ILMN_281180	RGD1311307	NM_001025719.1	NM_001025719.1		361238	71043777	NM_001025719.1	RGD1311307	NP_001020890.1	ILMN_1363886	0000450148	S	1628	GGTCTGGGTCCTGCAAGCTCATGTCTTCACTGTGTCTACTAACGACCAGC	17	+	36642100-36642149	17p12	Rattus norvegicus similar to 1300014I06Rik protein (RGD1311307), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	MGC116297	MGC116297
Rattus norvegicus	RefSeq	GI_31581517-S	ILMN_289619	NTF5	NM_013184.3	NM_013184.3		25730	31581517	NM_013184.3	Ntf5	NP_037316.2	ILMN_1363013	0001850594	S	1247	GCACACAGTCCTGGGCTCTATCCTGAGCACCGTATCATAAACCATGCACG	1	+	95888329-95888378	1q22	Rattus norvegicus neurotrophin 5 (Ntf5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence EXP]	Process by which a cell becomes capable of differentiating autonomously into a ganglion mother cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7402] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into a ganglion mother cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7402] [evidence IEA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence ISS]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IEA]; The process by which boundaries between a sensory organ and the surrounding tissue are established and maintained [goid 8052] [evidence ISS]; The process by which boundaries between a sensory organ and the surrounding tissue are established and maintained [goid 8052] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence NAS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	NT4P	NT4P
Rattus norvegicus	RefSeq	GI_62648071-S	ILMN_50794	LOC500302	XM_575651.1	XM_575651.1		500302	62648071	XM_575651.1	LOC500302	XP_575651.1	ILMN_1353215	0002570095	S	626	AAGGGAAACTTCTTCATGGGTGGCTACACCCTTTGGTGAGGAGCCGTGGC					PREDICTED: Rattus norvegicus similar to DAZ associated protein 2 (LOC500302), mRNA.					
Rattus norvegicus	RefSeq	GI_62659954-S	ILMN_57411	LOC501879	XM_577298.1	XM_577298.1		501879	62659954	XM_577298.1	LOC501879	XP_577298.1	ILMN_1351941	0005570707	S	1194	GTGAATCTGGCTGACAAGAAATGCAAGCGCTCACTGGCTGAACTATTCCC					PREDICTED: Rattus norvegicus similar to merozoite surface protein 1 (LOC501879), mRNA.					
Rattus norvegicus	RefSeq	GI_62652873-S	ILMN_68300	RGD1560783_PREDICTED	XM_235547.4	XM_235547.4		300120	109481114	XM_235547.4	RGD1560783_predicted	XP_235547.4	ILMN_1356142	0001090082	S	1127	TCCTGTTCGTGGGCTGCGGAGAGACACTGCGTGACCAGATATTCCAAGCG	7	+	123067798-123067847	7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110048E14, isoform a (predicted) (RGD1560783_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869079	ILMN_57610	LOC364253	XM_344296.1	XM_344296.1		364253	34869079	XM_344296.1	LOC364253	XP_344297.1	ILMN_1650805	0003780687	S	49	CGCGCTATGAGAAGACTCATCAATCTGCTCCGGCAGTCCCAGTCCTATTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (LOC364253), mRNA.					
Rattus norvegicus	RefSeq	GI_62648048-S	ILMN_49771	LOC500297	XM_575645.1	XM_575645.1		500297	62648048	XM_575645.1	LOC500297	XP_575645.1	ILMN_1368532	0006900725	S	1219	GGCAAGAGCCCGTCCTCCTTGGTGTGTGCTCTCAGAAGAAGAGAAATGGG					PREDICTED: Rattus norvegicus similar to env precursor (LOC500297), mRNA.					
Rattus norvegicus	RefSeq	GI_47577066-S	ILMN_288107	OLR772	NM_001000609.1	NM_001000609.1		404798	47577066	NM_001000609.1	Olr772	NP_001000609.1	ILMN_1370081	0002340519	S	291	CATGTCCCAGGTCTTCTTTGACCATTGTGTTGGTGCAGTAGAGATGCTGC	3	+	97302654-97302703	3q34	Rattus norvegicus olfactory receptor 772 (Olr772), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr772	Olr772
Rattus norvegicus	RefSeq	GI_62667548	ILMN_270751	IRAK1_PREDICTED	XM_001057078.1	XM_001057078.1		363520	109462333	XM_001057078.1	Irak1_predicted	XP_001057078.1	ILMN_1651046	0004050619	S	2050	CCCAGCCCGACAGAAGATGGTACAAAAGCTGGCCCTGTATGAAGAGGGGG				Xq37	PREDICTED: Rattus norvegicus interleukin-1 receptor-associated kinase 1 (predicted) (Irak1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18543354-S	ILMN_302490	ACOT12	NM_130747.1	NM_130747.1		170570	18543354	NM_130747.1	Acot12	NP_570103.1	ILMN_1373584	0006660647	S	1451	GCCGTCTGTCCCTCCATCTCCACAGTACATCAGAAGCCAGGTCATTTGTG	2	+	22034762-22034811	2q12	Rattus norvegicus acyl-CoA thioesterase 12 (Acot12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis [goid 6084] [evidence ISS]; The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis [goid 6084] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IDA]	Catalysis of the reaction: acetyl-CoA + H2O = CoA + acetate [goid 3986] [evidence IDA]; Catalysis of the reaction: acetyl-CoA + H2O = CoA + acetate [goid 3986] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + H2O = CoA + acetate [goid 3986] [evidence IDA]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IC ]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Cach; rACH	Cach; rACH
Rattus norvegicus	RefSeq	GI_62650371-S	ILMN_273143	RGD1310677_PREDICTED	XM_001067322.1	XM_001067322.1		313892	109479033	XM_001067322.1	RGD1310677_predicted	XP_001067322.1	ILMN_1372173	0003870114	S	2851	CCAGTCCTCTGGTACTTCCTGAACAAAATGACCGGCAACGGCGTGCTGCC				6q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632412N22 gene (predicted) (RGD1310677_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777679-S	ILMN_301466	OLR950	NM_001001370.1	NM_001001370.1		288878	47777679	NM_001001370.1	Olr950	NP_001001370.1	ILMN_1356097	0005670014	S	525	CTTGTGTGACACATCATCTGTCCTGCAGCTGTCTTGCACAGACACACGTT	7	+	4839459-4839508	7q11	Rattus norvegicus olfactory receptor 950 (Olr950), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr950	Olr950
Rattus norvegicus	RefSeq	GI_62655368-S	ILMN_66048	ATG16L1_PREDICTED	XM_343619.3	XM_343619.3		363278	109486324	XM_343619.3	Atg16l1_predicted	XP_343620.3	ILMN_1366066	0001660364	S	1615	GCTGCTCCCGTGATGACCTGCTAAAAATCATTGACCTGCGGACAAACGCC	9	+	86744274-86744323	9q35	PREDICTED: Rattus norvegicus ATG16 autophagy related 16-like 1 (S. cerevisiae) (predicted) (Atg16l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665257-S	ILMN_62805	PKD1L3_PREDICTED	XM_344767.2	XM_344767.2		365001	62665257	XM_344767.2	Pkd1l3_predicted	XP_344768.2	ILMN_1371296	0001500398	S	6475	CAACAGTGCGGGTGTGGGACCTACTGCGACATCATGCCCGGTTACAGGTC					PREDICTED: Rattus norvegicus polycystic kidney disease 1 like 3 (predicted) (Pkd1l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663697-S	ILMN_63581	ANKRD26_PREDICTED	XM_225482.4	XM_225482.4		291249	109505093	XM_225482.4	Ankrd26_predicted	XP_225482.4	ILMN_1355727	0001410075	S	1615	GGGACATCAAGTCACCAGCAGAGAGTGAAAGCTCGTCAGCCTAAGTTGCC	17	-	66286609-66286658	17q12.1	PREDICTED: Rattus norvegicus ankyrin repeat domain 26 (predicted) (Ankrd26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659794-S	ILMN_291594	RGD1563812_PREDICTED	XM_001060668.1	XM_001060668.1		498293	109499129	XM_001060668.1	RGD1563812_predicted	XP_001060668.1	ILMN_1356807	0006020685	S	514	TGCCCAAACAATCTGTGGATGGAAAAGCACCACTTGCTGCTGGAGAGGAG				13q25	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (predicted) (RGD1563812_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718231-S	ILMN_288507	LOC679718	XM_001054169.1	XM_001054169.1		679718	109513074	XM_001054169.1	LOC679718	XP_001054169.1	ILMN_1372554	0004670131	S	942	CTGGGACCTGGTAGAGTTAGTGGGACTTGGGAGTAGGAATGGGAGAAAGG	Un|NW_047861.1	+	194830-194879		PREDICTED: Rattus norvegicus hypothetical protein LOC679718 (LOC679718), mRNA.					
Rattus norvegicus	RefSeq	GI_62647087-S	ILMN_291953	RAB19	NM_001024326.1	NM_001024326.1		500088	66730269	NM_001024326.1	Rab19	NP_001019497.1	ILMN_1362243	0000450441	S	1128	GTCAGCCTGCTTTCCAACAGTCAACACAACCAGGCCTTCTTCCTGAGGAG	4	+	66898943-66898992	4q22	Rattus norvegicus RAB19, member RAS oncogene family (Rab19), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649093-S	ILMN_56758	LOC502953	XM_578458.1	XM_578458.1		502953	62649093	XM_578458.1	LOC502953	XP_578458.1	ILMN_1357521	0002260040	S	299	GAACGGGGAAACCTTCCAGCTGATGGAGCTCTACAGTAAAGACACAGCTG					PREDICTED: Rattus norvegicus similar to alpha-2u-globulin (LOC502953), mRNA.					
Rattus norvegicus	RefSeq	GI_16758561-S	ILMN_60208	BECN1	NM_053739.1	NM_053739.1		114558	16758561	NM_053739.1	Becn1	NP_446191.1	ILMN_2040701	0003450349	S	1705	TGCTTGTGGCACACAGTTGGGTAATGTGGGGAAAGGACAAGAGGTACAGG				10q32.1	Rattus norvegicus beclin 1 (coiled-coil, myosin-like BCL2-interacting protein) (Becn1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]	The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence IMP]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence ISS]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IMP]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation [goid 16239] [evidence ISS]; Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation [goid 16239] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism [goid 51707] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667120-S	ILMN_281775	RGD1559589_PREDICTED	XM_001060063.1	XM_001060063.1		302368	109512206	XM_001060063.1	RGD1559589_predicted	XP_001060063.1	ILMN_1353370	0006130097	S	1102	TCTGGGCCACCACTGGTTTATTTCCAGCCATGTCATACAGTGCAGTTCCC				Xq31	PREDICTED: Rattus norvegicus similar to family with sequence similarity 46, member D (predicted) (RGD1559589_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61097892-S	ILMN_53575	MT1A	NM_138826.4	NM_138826.4		24567	82617664	NM_138826.4	Mt1a	NP_620181.1	ILMN_1367740	0003710575	S	240	CACGTGCTGTGCCTGAAGTGACGAACAGTGCTGCTGCCCTCAGGTGTAAA	19	-	11261730-11261764:11261765-11261779	19p12	Rattus norvegicus metallothionein 1a (Mt1a), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The regulation of the levels, transport, and metabolism of metal ions within a cell or between a cell and its external environment [goid 6875] [evidence ISS]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence ISS]; A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence ISS]; Any process that reduce or remove the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion [goid 10273] [evidence ISS]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Mt	Mt
Rattus norvegicus	RefSeq	GI_62651931-S	ILMN_268160	EFNA2	XM_001076723.1	XM_001076723.1		84358	109481585	XM_001076723.1	Efna2	XP_001076723.1	ILMN_1372037	0001410044	S	441	CAACCTTGTGGACCGACCCTGCCTGCGGCTGAAAGTTTACGTGCGTCCAA				7q11	PREDICTED: Rattus norvegicus ephrin A2 (Efna2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence TAS]; The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin [goid 48013] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an ephrin receptor [goid 46875] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_57527379-S	ILMN_285052	CDC42EP2	NM_001009689.1	NM_001009689.1		309175	57527379	NM_001009689.1	Cdc42ep2	NP_001009689.1	ILMN_1373301	0002650369	S	939	GGACAATGGCCCTAACCTAGGAGTCAGGGTCTCAGGTCACACCTATGGGT	1	-	208548515-208548564	1q43	Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 2 (Cdc42ep2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]	Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the assembly of pseudopodia [goid 31274] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of pseudopodia [goid 31274] [evidence IEA]	Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect [goid 1515] [evidence ISS]; Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect [goid 1515] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence ISS]; Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the GTP-bound form of the Rho protein [goid 17049] [evidence ISS]; Interacting selectively with the GTP-bound form of the Rho protein [goid 17049] [evidence IEA]	MGC94615	MGC94615
Rattus norvegicus	RefSeq	GI_61556803-S	ILMN_270478	NAT3	NM_001013052.1	NM_001013052.1		290681	61556803	NM_001013052.1	Nat3	NP_001013070.1	ILMN_1358870	0006510438	S	364	GATAGTGCATTCCCATTTTCCTGCCAGATGTGGGAGCCTCTGGAATTGAC	16	-	23786216-23786265	16p14	Rattus norvegicus N-acetyltransferase 3 (Nat3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence IEA]; The directed movement of levorotatory isomer amino acids into, out of, within or between cells [goid 15807] [evidence ISS]	Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence IEA]; Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence IEA]; Catalysis of the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the levorotatory isomer of amino acids [goid 15179] [evidence ISS]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662445-S	ILMN_276579	RGD1307703_PREDICTED	XM_001071226.1	XM_001071226.1		364535	109504009	XM_001071226.1	RGD1307703_predicted	XP_001071226.1	ILMN_1365472	0001850037	S	1118	CTGCTACGTGACAGTGGTGAGCCTGCAGTACCTGACTCCACTCATCCTTA				16p14	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20422 (predicted) (RGD1307703_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659101-S	ILMN_66530	LOC501844	XM_577257.1	XM_577257.1		501844	62659101	XM_577257.1	LOC501844	XP_577257.1	ILMN_1359950	0002810338	S	265	GGAGCCATCCAGGAAAGAGACCCAAACTAGGAGAGAATCAGGGCGTGGCC					PREDICTED: Rattus norvegicus similar to Solute carrier family 29 (nucleoside transporters), member 4 (LOC501844), mRNA.					
Rattus norvegicus	RefSeq	GI_27670673-S	ILMN_55492	CLDN22_PREDICTED	XM_224843.2	XM_224843.2		306454	109503367	XM_224843.2	Cldn22_predicted	XP_224843.1	ILMN_1370550	0006200670	S	974	GGGACTAGGAGACCACCAGCAGCATCTGGAGCTGAAACAAGCTAACCCAG	16	-	47625085-47625134	16q11	PREDICTED: Rattus norvegicus claudin 22 (predicted) (Cldn22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27545349-S	ILMN_268241	YY1	NM_173290.1	NM_173290.1		24919	27545349	NM_173290.1	Yy1	NP_775412.1	ILMN_1362283	0002850040	S	921	CTCTGCTATGAGAAAGCATCTGCACACCCACGGTCCCAGAGTCCACGTCT	6	+	133155738-133155787	6q32	Rattus norvegicus YY1 transcription factor (Yy1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 45939] [evidence NAS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IDA]	UCRBP; NF-E1	UCRBP; NF-E1
Rattus norvegicus	RefSeq	GI_47577212	ILMN_266147	OLR367	NM_001001047.1	NM_001001047.1		405933	47577212	NM_001001047.1	Olr367	NP_001001047.1	ILMN_1650895	0003940068	S	677	TGAACTCCGCTGAGAGTCGGAAGAAGGCCATTTCCACCTGTGCATCCCAC	1	+	216618250-216618299	1q43	Rattus norvegicus olfactory receptor 367 (Olr367), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr367	Olr367
Rattus norvegicus	RefSeq	GI_6981587-S	ILMN_297146	SSTR5	NM_012882.1	NM_012882.1		25354	6981587	NM_012882.1	Sstr5	NP_037014.1	ILMN_1354850	0002480008	S	1266	GGGTCCTCCAGGCCTCCACGGTGTTGTCTTCTGGGATCTGAGAGTTTGCT	10	-	14741047-14741096	10q12	Rattus norvegicus somatostatin receptor 5 (Sstr5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IDA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IDA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IEA]	SOMATO; Smstr5	SOMATO; Smstr5
Rattus norvegicus	RefSeq	GI_62655057-S	ILMN_275727	RGD1561893_PREDICTED	XM_001066455.1	XM_001066455.1		301415	109487152	XM_001066455.1	RGD1561893_predicted	XP_001066455.1	ILMN_1369657	0001940731	S	2656	GGCAGGACAACCCTCCATGCGGCAGCCTTTGGGGATCATGCAGAATGCTT				9q31	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434D2328 (predicted) (RGD1561893_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657233-S	ILMN_51005	POLG2_PREDICTED	XM_221047.4	XM_221047.4		303612	109489217	XM_221047.4	Polg2_predicted	XP_221047.2	ILMN_1360519	0003450725	S	1065	TAAGGTGGCTCTAGATGTGGGGAAAGGCCCAACCGTGGAACTCCGACAGG	10	-	96122886-96122887:96123486-96123533	10q32.1	PREDICTED: Rattus norvegicus polymerase (DNA directed), gamma 2, accessory subunit (predicted) (Polg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649845-S	ILMN_50443	TFCP2L4_PREDICTED	XM_233561.4	XM_233561.4		298555	109475656	XM_233561.4	Tfcp2l4_predicted	XP_233561.4	ILMN_1358007	0000360100	S	1755	GAGGAGGGAGACAGAGGAGGTGTTTGACGCACTCATGTTGAAGACCCCGG	5	-	154319254-154319303	5q36	PREDICTED: Rattus norvegicus transcription factor CP2-like 4 (predicted) (Tfcp2l4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34879780-S	ILMN_265912	RGD1563606_PREDICTED	XM_001064617.1	XM_001064617.1		367749	109511599	XM_001064617.1	RGD1563606_predicted	XP_001064617.1	ILMN_1363759	0006980537	S	268	AGCCTCCAAAGAAGGCCCCTCAGGTCCCTGTGGTGCAAACTGAAGAGCGA				Xq13	PREDICTED: Rattus norvegicus similar to cysteine-rich protein 2 (predicted) (RGD1563606_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651152-S	ILMN_49519	RGD1309059_PREDICTED	XM_234484.4	XM_234484.4		314388	109478556	XM_234484.4	RGD1309059_predicted	XP_234484.4	ILMN_1356452	0003440692	S	3178	CCTGCTTTCTTGGACCACGTTTGAGACTTAGAAGAATGGGTCTTTCTGCC	6	-	125312519-125312568	6q32	PREDICTED: Rattus norvegicus similar to KIAA2010 protein (predicted) (RGD1309059_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981175-S	ILMN_291466	MAK	NM_013136.1	NM_013136.1		25677	6981175	NM_013136.1	Mak	NP_037268.1	ILMN_1373612	0000580059	S	2171	CTACAGAGTCTATTTCTACCGAGTTCCACAGGACGCACACAACCGTGGGC	17	+	29697982-29698031	17p12	Rattus norvegicus male germ cell-associated kinase (Mak), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93585	MGC93585
Rattus norvegicus	RefSeq	GI_47606374-S	ILMN_277670	OLR373	NM_001001275.1	NM_001001275.1		293805	47606374	NM_001001275.1	Olr373	NP_001001275.1	ILMN_1358237	0005130091	S	540	TGTGCCACCAGTGATGCAACTTGTGTGTGCCACGAGTCATATCTATGAGC	1	+	216802729-216802778	1q43	Rattus norvegicus olfactory receptor 373 (Olr373), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr373; ratchr1-216960620-216961570_ORF	Olr373; ratchr1-216960620-216961570_ORF
Rattus norvegicus	RefSeq	GI_18158440-S	ILMN_276732	SMGB	NM_080775.1	NM_080775.1		54303	18158440	NM_080775.1	Smgb	NP_542953.1	ILMN_1370288	0004780102	S	510	CTCTGCATTGTACCTCATAAAAAGGGGCCTGACACTTCCCGTGAGACGCC	3	+	144433378-144433427	3q41	Rattus norvegicus neonatal submandibular gland protein B (Smgb), mRNA.			Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302001-S	ILMN_273811	SLC38A5	NM_138854.1	NM_138854.1		192208	20302001	NM_138854.1	Slc38a5	NP_620209.1	ILMN_1349808	0007000707	S	1592	AGTCACTTTCCTGAGTCCCTTCTGCCTGGGACATGGAGGTGGCTGGTCTC	X	-	26244632-26244681	Xq13	Rattus norvegicus solute carrier family 38, member 5 (Slc38a5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence IDA]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence IDA]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IDA]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence IDA]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence IDA]	SN2	SN2
Rattus norvegicus	RefSeq	GI_62656662-S	ILMN_289279	RGD1310708_PREDICTED	XM_220774.3	XM_220774.3		303376	62656662	XM_220774.3	RGD1310708_predicted	XP_220774.3	ILMN_1361522	0003060273	S	1229	CCCTCTGACTTGGGCTGGTTCCAGGTCCCCCCATTAAAGAACTGAAGGCC	10	+	71116045-71116094	10q26	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434H2215 (predicted) (RGD1310708_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47271545-S	ILMN_266163	CIRBP	NM_031147.2	NM_031147.2		81825	47271545	NM_031147.2	Cirbp	NP_112409.2	ILMN_1369235	0006550494	S	1218	AGGTCCTGCCCATCGGGCACATGTCTCAAGCCCGCAGGGAGCACAGCAGT	7	-	11047144-11047193	7q11	Rattus norvegicus cold inducible RNA binding protein (Cirbp), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653669-S	ILMN_64727	LOC500998	XM_580145.1	XM_580145.1		500998	62653669	XM_580145.1	LOC500998	XP_580145.1	ILMN_1360964	0006130427	S	370	CCCAAGCGACGGTGATGAGAAGATGGGTGGCCTTCCGTTGGTGCTTACTC					PREDICTED: Rattus norvegicus LOC500998 (LOC500998), mRNA.					
Rattus norvegicus	RefSeq	GI_34877567-S	ILMN_65516	EIF4E2_PREDICTED	XM_343616.2	XM_343616.2		363275	109486326	XM_343616.2	Eif4e2_predicted	XP_343617.1	ILMN_1370825	0007050088	S	648	CGAATCCGGGACACTCTTCGGCGCGTGCTTAACCTACCTCCCAACACCAT	9	+	86034289-86034338	9q35	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 4E member 2 (predicted) (Eif4e2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978570-S	ILMN_288042	BMP4	NM_012827.1	NM_012827.1		25296	6978570	NM_012827.1	Bmp4	NP_036959.1	ILMN_1351201	0001740047	S	1588	TTATCAGGAGATGGTGGTGGAGGGGTGCGGATGCCGCTGAAATCAGGCAG	15	-	22283329-22283340:22283341-22283378	15p14	Rattus norvegicus bone morphogenetic protein 4 (Bmp4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence NAS]; Process by which a cell becomes capable of differentiating autonomously into a mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7500] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into a mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7500] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence NAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence IEA]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops [goid 21978] [evidence IEA]; The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops [goid 21978] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte differentiation [goid 32331] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte differentiation [goid 32331] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEP]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process by which the anatomical structures of the tongue are generated and organized. Morphogenesis pertains to the creation of form. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43587] [evidence IEP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45662] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45662] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence ISS]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence IEP]; Signaling at short range between the head ectoderm and the optic vesicle that results in the head ectoderm forming a lens [goid 60235] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into a mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7500] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence IEA]; The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops [goid 21978] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte differentiation [goid 32331] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45662] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	BOMPR4A	BOMPR4A
Rattus norvegicus	RefSeq	GI_62652384-S	ILMN_66512	MATN2_PREDICTED	XM_216941.4	XM_216941.4		299996	109480694	XM_216941.4	Matn2_predicted	XP_216941.4	ILMN_1373697	0001980347	S	3073	GCTCTAGAAGACTCTGATGGAAGACAGGACTCACCAGCAGGGGATCTGCC	7	+	69878686-69878686:69879768-69879816	7q22	PREDICTED: Rattus norvegicus matrilin 2 (predicted) (Matn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663686-S	ILMN_62976	LOC498768	XM_574054.1	XM_574054.1		498768	62663686	XM_574054.1	LOC498768	XP_574054.1	ILMN_1349656	0006110373	S	1326	GCCACCTTTGGAGCCTTCAGGCGAACTTGGGATACACAAGAGGATCCAGG					PREDICTED: Rattus norvegicus similar to armadillo repeat containing 4 (LOC498768), mRNA.					
Rattus norvegicus	RefSeq	GI_47577368-S	ILMN_297481	OLR705	NM_001000570.1	NM_001000570.1		366112	47577368	NM_001000570.1	Olr705	NP_001000570.1	ILMN_1368892	0004230563	S	692	GGCGCAAAGCTCTGTTCACCTGCAGCTCCCATATCACGGTGGTTGTGTGT	3	-	73938452-73938501	3q24	Rattus norvegicus olfactory receptor 705 (Olr705), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr705; ratchr3-73835565-73834645_ORF	Olr705; ratchr3-73835565-73834645_ORF
Rattus norvegicus	RefSeq	GI_19424259-S	ILMN_290713	CDC25B	NM_133572.1	NM_133572.1		171103	19424259	NM_133572.1	Cdc25b	NP_598256.1	ILMN_1363751	0003870600	S	2587	GCCCACAAAGGGATCTTTTCCTTTAAGACCCCCAGAGCTAGAGCAAAGGC	3	+	118903305-118903354	3q36	Rattus norvegicus cell division cycle 25 homolog B (S. pombe) (Cdc25b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEP]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The cell cycle process whereby the first meiotic division occurs in the female germline [goid 7144] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEP]		
Rattus norvegicus	RefSeq	GI_62666806-I	ILMN_50057	ACE2	XM_576956.1	XM_576956.1		302668	62666806	XM_576956.1	Ace2	XP_576956.1	ILMN_1376212	0003990309	S	843	CAGAGGGATTAGGTGCAGAGAGACAGGACTTGGTGTGGGTGCTGACGTTG				Xq21	PREDICTED: Rattus norvegicus angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 (Ace2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The drinking behavior that is mediated by the action of angiotensin in the brain. Angiotensin stimulates the brain centers that control thirst [goid 3051] [evidence ISS]; The process by which renin-angiotensin modulates the force with which blood passes through the circulatory system [goid 3081] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32800] [evidence ISS]; Any process that modulates the frequency, rate or extent of increases in the diameter of blood vessels [goid 42312] [evidence TAS]; The process during virion attachment where a virion binds to a host cell receptor, resulting in a conformational change of the virus protein [goid 46813] [evidence ISS]	Combining with a virus component to initiate a change in cell activity [goid 1618] [evidence ISS]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IDA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IDA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IC ]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence ISS]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence IEA]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640447-S	ILMN_48932	RGD1566323_PREDICTED	XM_219706.4	XM_219706.4		309256	109458865	XM_219706.4	RGD1566323_predicted	XP_219706.4	ILMN_1371778	0004480110	S	2746	GCGGCTTCTCTGGTCAGCTGGGATCGCTTCACTTCCCTTCAGCAAGCTCA	1	-	118788490-118788539	1q22	PREDICTED: Rattus norvegicus similar to mKIAA1018 protein (predicted) (RGD1566323_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642186-S	ILMN_52861	LIPL3_PREDICTED	XM_220066.3	XM_220066.3		309528	62642186	XM_220066.3	Lipl3_predicted	XP_220066.3	ILMN_1361363	0002030528	S	1453	GGGCAGGGCCATGGGAGGATGGATGCTCAAAGGAATATCCAGACTTGGAA				1q52	PREDICTED: Rattus norvegicus lipase-like, ab-hydrolase domain containing 3 (predicted) (Lipl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641809-I	ILMN_59695	VEGFB	XM_342007.2	XM_342007.2		89811	62641809	XM_342007.2	Vegfb	XP_342008.2	ILMN_1375408	0004480324	S	114	CGGCCCGATTGGAACCCAATGGACTTTTGGGGGCCTCCCTTTCCCAGCTG				1q43	PREDICTED: Rattus norvegicus vascular endothelial growth factor B (Vegfb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652573-S	ILMN_52802	RGD1309971_PREDICTED	XM_235397.4	XM_235397.4		315054	109480856	XM_235397.4	RGD1309971_predicted	XP_235397.4	ILMN_1368461	0006550671	S	3845	GGTCGGTGACCCAAGATCCCTGTGCAGTTTCCAGTTTCTGCACTCGAGCA	7	-	111284049-111284098	7q34	PREDICTED: Rattus norvegicus similar to KIAA1126 protein (predicted) (RGD1309971_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654554-S	ILMN_62956	TNA_PREDICTED	XM_236746.3	XM_236746.3		316099	62654554	XM_236746.3	Tna_predicted	XP_236746.1	ILMN_1352125	0001580446	S	264	AAGACCTTCCATGAGGCGAGCGAGGACTGCATCTCACAAGGGGGCACGCT					PREDICTED: Rattus norvegicus tetranectin (plasminogen binding protein) (predicted) (Tna_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658154-S	ILMN_289129	EIF4G1	XM_001060756.1	XM_001060756.1		287986	109494660	XM_001060756.1	Eif4g1	XP_001060756.1	ILMN_1368561	0001190097	S	354	CGACACAAATGAACACGCCTTCTCAGCCCCGCCAGGGAGGATTCAGGTCT				11q23	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 4 gamma, 1 (Eif4g1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642620-S	ILMN_52352	LOC365513	XM_345067.2	XM_345067.2		365513	62642620	XM_345067.2	LOC365513	XP_345068.2	ILMN_1364247	0003440008	S	1245	CAACCTGGGGCTAGAGCAGAGAGGAGTGAGGGTGGAGAGATGTCAGTGGA					PREDICTED: Rattus norvegicus similar to suppressor of K+ transport defect 3 (LOC365513), mRNA.					
Rattus norvegicus	RefSeq	GI_62643276	ILMN_63017	USH3A	XM_346620.2	XM_346620.2		261738	62643276	XM_346620.2	Ush3a	XP_346621.2	ILMN_1651061	0002450707	S	888	CGGGAGCAGAAGGATGGTTTCAGAAGGGTGCTCTGTCTAGTGGGTAACTG				2q31	PREDICTED: Rattus norvegicus Usher syndrome type III A (Ush3a), mRNA.					
Rattus norvegicus	RefSeq	GI_9506968-S	ILMN_266860	PFKFB4	NM_019333.1	NM_019333.1		54283	9506968	NM_019333.1	Pfkfb4	NP_062206.1	ILMN_1355508	0002470053	S	1467	GCGGAGGGGTCACTCCAGGCCACTTCTTCCTGTTTGCTGTATGAACGGTC	8	+	114050262-114050311	8q32	Rattus norvegicus 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 (Pfkfb4), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence IEA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence IDA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_6981403-S	ILMN_282288	PRL	NM_012629.1	NM_012629.1		24683	6981403	NM_012629.1	Prl	NP_036761.1	ILMN_1373356	0002650368	S	450	CCTAGCTACTCCTGAAGACAAGGAACAAGCCCAGAAAGTCCCTCCGGAAG	17	-	44702649-44702656:44705335-44705376	17p11	Rattus norvegicus prolactin (Prl), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence IEA]; The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence ISS]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The secretion of milk by the mammary gland [goid 7595] [evidence TAS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence IMP]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 33555] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that modulates the frequency, rate or extent of the JAK-STAT signaling pathway [goid 46425] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IDA]	Interacting selectively with the prolactin receptor [goid 5148] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	RNPROL; PRLB; PRLSD1; Prl1a1; RATPRLSD1; Prol	RNPROL; PRLB; PRLSD1; Prl1a1; RATPRLSD1; Prol
Rattus norvegicus	RefSeq	GI_57527060-S	ILMN_298150	ZGPAT	NM_001009656.1	NM_001009656.1		296478	57527060	NM_001009656.1	Zgpat	NP_001009656.1	ILMN_1363578	0003780450	S	1618	CAGCGGAAGGCAGACACTCACAGGAAGATGACGGAGTTCTAGTGGCCCTG	3	+	170521703-170521744:170521745-170521752	3q43	Rattus norvegicus zinc finger, CCCH-type with G patch domain (Zgpat), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC105627; RGD1310801	MGC105627; RGD1310801
Rattus norvegicus	RefSeq	GI_62658951-S	ILMN_57693	RASAL1_PREDICTED	XM_341088.2	XM_341088.2		360814	62658951	XM_341088.2	Rasal1_predicted	XP_341089.2	ILMN_1360108	0003190427	S	2408	CCTCCTGCATGCCCTCTTGTTTCCAGTTCACCAGTGGGACAGTATCCTGG				12q16	PREDICTED: Rattus norvegicus RAS protein activator like 1 (GAP1 like) (predicted) (Rasal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658165-S	ILMN_53857	DVL3_PREDICTED	XM_221304.4	XM_221304.4		303811	109493543	XM_221304.4	Dvl3_predicted	XP_221304.3	ILMN_1369869	0002450039	S	2346	GCTTCCCAAGGATGTCCAGCCCCCACAGGACCCACACTTCAAGGTCACTA	11	-	82596895-82596944	11q23	PREDICTED: Rattus norvegicus dishevelled 3, dsh homolog (Drosophila) (predicted) (Dvl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393868-S	ILMN_68927	ODF2	NM_017213.2	NM_017213.2		29479	76880450	NM_017213.2	Odf2	NP_058909.2	ILMN_1362691	0000050133	S	2068	GCTGCCTGACATCCTCAAGATCACGGAGGCCAAGCTGGCTGAGTGTCAAG	3	+	8910082-8910131	3p12	Rattus norvegicus outer dense fiber of sperm tails 2 (Odf2), mRNA.	Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]	The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IPI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_34864983-S	ILMN_50779	LOC365510	XM_345064.1	XM_345064.1		365510	34864983	XM_345064.1	LOC365510	XP_345065.1	ILMN_1356580	0005570138	S	635	AGCTCCGGGCCCTGGGGATGTTGGTACTGCTAGCCTTGTGGGCAGCAACA					PREDICTED: Rattus norvegicus similar to Avian reticuloendotheliosis viral (v-rel) oncogene related B (LOC365510), mRNA.					
Rattus norvegicus	RefSeq	GI_29789093-A	ILMN_298157	BCKDK	NM_019244.1	NM_019244.1		29603	29789093	NM_019244.1	Bckdk	NP_062117.1	ILMN_1376775	0004610035	S	2084	CTTAGGGAGGATCAGGGACTTGGGCAGAAAGCACTGGAGCAGAACTGTGG	1	+	187194754-187194803	1q36	Rattus norvegicus branched chain ketoacid dehydrogenase kinase (Bckdk), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity [goid 5947] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence IDA]; The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide [goid 16310] [evidence IDA]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the reaction: ATP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) = ADP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) phosphate [goid 47323] [evidence IMP]; Catalysis of the reaction: ATP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) = ADP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) phosphate [goid 47323] [evidence TAS]; Catalysis of the reaction: ATP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) = ADP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) phosphate [goid 47323] [evidence IMP]; Catalysis of the reaction: ATP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) = ADP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) phosphate [goid 47323] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654629-S	ILMN_67420	LOC501090	XM_576505.1	XM_576505.1		501090	62654629	XM_576505.1	LOC501090	XP_576505.1	ILMN_1355203	0003710451	S	1167	GGAGCAGCAAAAAATGCTTAGCGCAGCTCCTCTATTTAAGTGTGGCTGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC501090), mRNA.					
Rattus norvegicus	RefSeq	GI_62647521-S	ILMN_47822	LOC502796	XM_578295.1	XM_578295.1		502796	62647521	XM_578295.1	LOC502796	XP_578295.1	ILMN_1362648	0002190402	S	535	GAAAGGACATGAGGCCCACACTCTTTTTCCTGGGTTCCTGCTCTTCTTCC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502796), mRNA.					
Rattus norvegicus	RefSeq	GI_9506720-S	ILMN_301222	GDNF	NM_019139.1	NM_019139.1		25453	9506720	NM_019139.1	Gdnf	NP_062012.1	ILMN_1355880	0003130731	S	456	CCAAGGAGGAACTGATCTTTCGATATTGTAGCGGTTCCTGTGAAGCGGCC	2	+	57423785-57423834	2q16	Rattus norvegicus glial cell derived neurotrophic factor (Gdnf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence IEA]; The maintenance of membrane composition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft) [goid 1941] [evidence ISS]; The maintenance of membrane composition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft) [goid 1941] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence TAS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IDA]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence IEA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of the catecholamine neurotransmitter dopamine into a cell [goid 51584] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence IEA]; The maintenance of membrane composition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft) [goid 1941] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of the catecholamine neurotransmitter dopamine into a cell [goid 51584] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; A growth factor that binds to glial cell line-derived neurotrophic factor receptors [goid 30116] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_18543330-S	ILMN_276478	GNB2L1	NM_130734.1	NM_130734.1		83427	18543330	NM_130734.1	Gnb2l1	NP_570090.1	ILMN_1374713	0004200577	S	407	ACACCAAGGATGTGCTGAGCGTGGCTTTCTCCTCTGACAACCGGCAGATT	10	+	34069143-34069192	10q21	Rattus norvegicus guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1 (Gnb2l1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence TAS]	Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with protein kinase C [goid 5080] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RACK1	RACK1
Rattus norvegicus	RefSeq	GI_62644711-S	ILMN_272948	RGD1565957_PREDICTED	XM_001072394.1	XM_001072394.1		499748	109469426	XM_001072394.1	RGD1565957_predicted	XP_001072394.1	ILMN_1368673	0001690358	S	856	GCTGTCTTGCCTGCACTCCGTGTGTGAGCAGTGCCTGCAGATTCTTTACG				3p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110061N23 (predicted) (RGD1565957_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639208-S	ILMN_280676	SPNB4	XM_001072073.1	XM_001072073.1		308458	109461490	XM_001072073.1	Spnb4	XP_001072073.1	ILMN_1354680	0003060500	S	8361	GCCCTTAGCCCCTGTACTCCGCCATCTCAGAGCCATGCGGTTAATTCTTG				1q21	PREDICTED: Rattus norvegicus spectrin beta 4 (Spnb4), mRNA.					
Rattus norvegicus	RefSeq	Rn.20251	ILMN_298977	LOC681153	XM_001060542.1	XM_001060542.1		681153	109499478	XM_001060542.1	LOC681153	XP_001060542.1	ILMN_1530454	0001850086	S	1034	CTGTTTATATTTGAAGGAAAAAGAGATTCTCGAAGAAGCACAAAAGAAAT	14	-	10826524-10826573	14p22	PREDICTED: Rattus norvegicus hypothetical protein LOC681153 (LOC681153), mRNA.					
Rattus norvegicus	RefSeq	GI_62660156-S	ILMN_298977	LOC681153	XM_001060542.1	XM_001060542.1		681153	109499478	XM_001060542.1	LOC681153	XP_001060542.1	ILMN_1354904	0002480184	S	343	GAGGGAGCCAAGCCCCCGGTGGTGTGAGAAGAGCCTCGAGTAGACTTATT	14	-	10827215-10827264	14p22	PREDICTED: Rattus norvegicus hypothetical protein LOC681153 (LOC681153), mRNA.					
Rattus norvegicus	RefSeq	GI_62644282-S	ILMN_262792	MYOZ2_PREDICTED	XM_001075328.1	XM_001075328.1		295426	109467554	XM_001075328.1	Myoz2_predicted	XP_001075328.1	ILMN_1358557	0000130619	S	994	AAAAGCTGCCGTCGGTCTTCTTAGCGGCGAAGCCATTTGAGTGCCTCGTC				2q42	PREDICTED: Rattus norvegicus myozenin 2 (predicted) (Myoz2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639317-S	ILMN_290811	LOC499120	XM_001078762.1	XM_001078762.1		499120	109461611	XM_001078762.1	LOC499120	XP_001078762.1	ILMN_1356350	0001850273	S	2908	GCTCAGAGCTCACATCTTTCTCGGCACCAACGGGTTCATACCGGCGAGAA				1q21	PREDICTED: Rattus norvegicus hypothetical protein LOC499120 (LOC499120), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639321-S	ILMN_290811	LOC499120	XM_001078762.1	XM_001078762.1		499120	109461611	XM_001078762.1	LOC499120	XP_001078762.1	ILMN_1366658	0005910594	S	3838	TGCTCAAACCTTACTCGGCATCTGAGAACTCACCGTGACGACAAGCCCTG				1q21	PREDICTED: Rattus norvegicus hypothetical protein LOC499120 (LOC499120), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662303-S	ILMN_61370	LOC502048	XM_577481.1	XM_577481.1		502048	62662303	XM_577481.1	LOC502048	XP_577481.1	ILMN_1374096	0003290048	S	165	CCCCTACAGGTATTGGACCTGCTGTTTGTGAGGTATGCAAACTTCAGCCC				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502048), mRNA.					
Rattus norvegicus	RefSeq	GI_62657935-S	ILMN_273504	STXBP5L_PREDICTED	XM_001070379.1	XM_001070379.1		288080	109494438	XM_001070379.1	Stxbp5l_predicted	XP_001070379.1	ILMN_1362527	0001770706	S	3606	GATTGCACTTGATGAGAGAGGGCAGCGCCTGGGTGAGCTGGAGGAGAAGA				11q22	PREDICTED: Rattus norvegicus syntaxin binding protein 5-like (predicted) (Stxbp5l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718560-S	ILMN_68453	LOC501423	XM_580193.1	XM_580193.1		501423	62718560	XM_580193.1	LOC501423	XP_580193.1	ILMN_1374130	0005340139	S	0	GAAAGAGCCCCGCGCCGAATGCCCTCTGCATGCCATGGCTCCGGAAATGT					PREDICTED: Rattus norvegicus LOC501423 (LOC501423), mRNA.					
Rattus norvegicus	RefSeq	GI_9507160-S	ILMN_281623	SYN2	NM_019159.1	NM_019159.1		29179	9507160	NM_019159.1	Syn2	NP_062032.1	ILMN_1368118	0001740722	S	1469	AGCAAGACCCCTCCTCAGCGGCCAGCCCCCCAAGGGTGTTTACAGTATAT	4	+	151405563-151405612	4q42	Rattus norvegicus synapsin II (Syn2), transcript variant 2, mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence TAS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence TAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]	Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence TAS]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11867766] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659315-S	ILMN_271765	LRRN2_PREDICTED	XM_001060363.1	XM_001060363.1		289020	109498622	XM_001060363.1	Lrrn2_predicted	XP_001060363.1	ILMN_1368979	0002360725	S	3178	ACTGTCTTGAGAGCCTGCCCCAAAAGTGGGAGTGTCCCCAGCTGGATCTG				13q13	PREDICTED: Rattus norvegicus leucine rich repeat protein 2, neuronal (predicted) (Lrrn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658005-S	ILMN_65956	LOC498095	XM_573301.1	XM_573301.1		498095	62658005	XM_573301.1	LOC498095	XP_573301.1	ILMN_1366665	0000360400	S	45	TCTTCCATCGGTGCGATCGGCCGGCCTTTTCTCTTGAGACCTGCTGGATC				11q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610012D17 (LOC498095), mRNA.					
Rattus norvegicus	RefSeq	GI_47576904-S	ILMN_292327	OLR232	NM_001001035.1	NM_001001035.1		405921	47576904	NM_001001035.1	Olr232	NP_001001035.1	ILMN_1364752	0006040736	S	650	CTTATGGCCATATCATAGTGGCGGTTTTCAGGATGAAATCAGCTGCAGGG	1	-	164396732-164396781	1q33	Rattus norvegicus olfactory receptor 232 (Olr232), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr232	Olr232
Rattus norvegicus	RefSeq	GI_62665848-S	ILMN_68841	SLC5A4A_PREDICTED	XM_228085.4	XM_228085.4		294341	109509334	XM_228085.4	Slc5a4a_predicted	XP_228085.4	ILMN_1373559	0002260458	S	1812	TGCAGAAGACAGGGAGGAGAACGAGGCCGATGCCAGGACTGAAGAAGACC	20	-	12876248-12876251:12877504-12877549	20p12	PREDICTED: Rattus norvegicus solute carrier family 5, member 4a (predicted) (Slc5a4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13487930-S	ILMN_55545	YWHAZ	NM_013011.2	NM_013011.2		25578	62990182	NM_013011.2	Ywhaz	NP_037143.2	ILMN_1373913	0004570239	S	1786	GATGCAGTACAAACGAGTTGCTTGGTGTTCCCGGCTCCATGCGGATCAAG	7	-	72284089-72284138	7q22	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (Ywhaz), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The regulated release of histamine by a mast cell or group of mast cells [goid 2553] [evidence IMP]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	14-3-3z	14-3-3z
Rattus norvegicus	RefSeq	GI_62664707-S	ILMN_56887	ZADH2_PREDICTED	XM_214526.4	XM_214526.4		291403	109506854	XM_214526.4	Zadh2_predicted	XP_214526.2	ILMN_1359999	0006450427	S	1547	CCTCAGGTATGTACCAGGTGAGAACGCAGTGGGGTCAGTGGGCGTTGAAT	18	+	80621505-80621554	18q12.3	PREDICTED: Rattus norvegicus zinc binding alcohol dehydrogenase, domain containing 2 (predicted) (Zadh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667187-S	ILMN_48242	LOC503450	XM_579000.1	XM_579000.1		503450	62667187	XM_579000.1	LOC503450	XP_579000.1	ILMN_1349556	0001570451	S	56	GGACTTTCATAATCTACAAGTCCGGTGCTACTTAATAGATGCAGCAACCA					PREDICTED: Rattus norvegicus similar to BMI1-like protein (LOC503450), mRNA.					
Rattus norvegicus	RefSeq	GI_62659808-S	ILMN_70231	LOC501867	XM_577283.1	XM_577283.1		501867	62659808	XM_577283.1	LOC501867	XP_577283.1	ILMN_1374975	0001170435	S	133	CCCAGCCCAAAAGAGATCTAACACGCTTTTTCCCCCAGACCCTGGACAGG				13q23	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC501867), mRNA.					
Rattus norvegicus	RefSeq	GI_62645862-S	ILMN_271232	TMC2_PREDICTED	XM_001081150.1	XM_001081150.1		296153	109470817	XM_001081150.1	Tmc2_predicted	XP_001081150.1	ILMN_1370597	0000940131	S	488	TGAGGGAACTCAGGGAAGCCCAAGCCTTTGTGGAGAAGTATGAAGGAGCC				3q36	PREDICTED: Rattus norvegicus transmembrane channel-like 2 (predicted) (Tmc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650837-S	ILMN_57035	LOC500676	XM_580104.1	XM_580104.1		500676	62650837	XM_580104.1	LOC500676	XP_580104.1	ILMN_1372667	0002190500	S	531	ATCAAGTTACCTGGGCTAGCTTCTCATCAGCACACACAACATGACCGCGG					PREDICTED: Rattus norvegicus LOC500676 (LOC500676), mRNA.					
Rattus norvegicus	RefSeq	GI_25282470-A	ILMN_276110	KCNK2	NM_172041.1	NM_172041.1		170899	25282402	NM_172041.1	Kcnk2	NP_742038.1	ILMN_1376659	0002650427	S	3229	TGAAGGCTGATGTGGTGGGATGTACCACGCATAAACTGTGAACTGGATGG				13q26	Rattus norvegicus potassium channel, subfamily K, member 2 (Kcnk2), transcript variant 1, mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	rTREK1d; Trek-1	rTREK1d; Trek-1
Rattus norvegicus	RefSeq	GI_62662565-S	ILMN_284173	TLL1_PREDICTED	XM_001073797.1	XM_001073797.1		290694	109504072	XM_001073797.1	Tll1_predicted	XP_001073797.1	ILMN_1351351	0003940403	S	3352	CCCAGGACAACTGGATTGTGAATGGTTGCTGGTGTCAGAACAAGGCTCTC					PREDICTED: Rattus norvegicus tolloid-like 1 (predicted) (Tll1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661836-S	ILMN_63851	LOC498562	XM_573837.1	XM_573837.1		498562	62661836	XM_573837.1	LOC498562	XP_573837.1	ILMN_1357768	0006350717	S	269	CATTTTGTCCTGCCTACTACTGACTGCCTCGATGGTGCCTACAGATGAAG					PREDICTED: Rattus norvegicus similar to WD repeat domain 12 (LOC498562), mRNA.					
Rattus norvegicus	RefSeq	GI_16757995-S	ILMN_282713	UBD	NM_053299.1	NM_053299.1		29168	16757995	NM_053299.1	Ubd	NP_445751.1	ILMN_1353912	0006200541	S	376	CCAGCTCCGTGGCCCAGGTGAAGGAAATGATCGAGAATGTGACCGCTGTG	20	-	1476190-1476239	20p12	Rattus norvegicus ubiquitin D (Ubd), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62641912-S	ILMN_64789	RGD1564894_PREDICTED	XM_219626.3	XM_219626.3		309227	109459934	XM_219626.3	RGD1564894_predicted	XP_219626.1	ILMN_1356247	0006650195	S	924	CATGTTCCCATGCCCTGTGACTGGAATCAGTGGAATTGTGCACCTCTGTG	1	+	215633462-215633511	1q43	PREDICTED: Rattus norvegicus similar to glycine-N-acyltransferase isoform a (predicted) (RGD1564894_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638913-S	ILMN_50164	LOC499080	XM_574364.1	XM_574364.1		499080	62638913	XM_574364.1	LOC499080	XP_574364.1	ILMN_1369243	0001240368	S	477	CAGCAGGACCCCTGTGCCAGAGACACTGCCGGACCCTGAAGGAAACAGAC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499080), mRNA.					
Rattus norvegicus	RefSeq	GI_62654534	ILMN_61890	LOC501077	XM_576489.1	XM_576489.1		501077	62654534	XM_576489.1	LOC501077	XP_576489.1	ILMN_1650974	0002320717	S	1996	CCCTATGAATGCAATGAGTGTGGGACGGGCATCATTCTGTGGGGGAAAGC					PREDICTED: Rattus norvegicus similar to Zinc finger protein 660 (LOC501077), mRNA.					
Rattus norvegicus	RefSeq	GI_62656188-S	ILMN_53073	GTLF3B_PREDICTED	XM_343907.3	XM_343907.3		363614	109488246	XM_343907.3	Gtlf3b_predicted	XP_343908.1	ILMN_1352876	0004120338	S	576	AGCTGCTGGCTGTGGATGTGTGAAAGTCCAGAGTGGGATGAAGGGCAGGC	10	-	47050111-47050160	10q22	PREDICTED: Rattus norvegicus gene trap locus F3b (predicted) (Gtlf3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591887-S	ILMN_289839	OPRS1	NM_030996.1	NM_030996.1		29336	13591887	NM_030996.1	Oprs1	NP_112258.1	ILMN_1365626	0001570184	S	1383	GAAAGCTGGCTGATGCCTGGGGCCAGTTCCCAAAGAGAGGACCTGGGGAA	5	-	59162661-59162710	5q22	Rattus norvegicus opioid receptor, sigma 1 (Oprs1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. A droplet of triacylglycerol surrounded by a monolayer of phospholipids, interacting with the triacylglycerols and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins [goid 12511] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The chemical reactions and pathways resulting in the formation of ergosterol, (22E)-ergosta-5,7,22-trien-3-beta-ol, a sterol found in ergot, yeast and moulds [goid 6696] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an opioid, any narcotic derived from or resembling opium, to initiate a change in cell activity [goid 4985] [evidence IDA]; Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols [goid 247] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17981125] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62665525-S	ILMN_288669	LOC502210	XR_007393.1	XR_007393.1		502210	109509068	XR_007393.1	LOC502210		ILMN_1354143	0002850181	S	29	CCACGCCGCCGAAAGATGATGAGAAGAAGACGAATGCTGGGAAGTCAGCC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S25 (LOC502210), mRNA.					
Rattus norvegicus	RefSeq	GI_62640816-S	ILMN_263257	LOC683893	XR_008476.1	XR_008476.1		683893	109462248	XR_008476.1	LOC683893		ILMN_1374813	0003120722	S	5084	ACAGCAGTCTGTGGCAGGGGCTTCCAGTCTCGCAAAGTCAACTGCATTCA					PREDICTED: Rattus norvegicus similar to ADAMTS-like 3 (LOC683893), mRNA.					
Rattus norvegicus	RefSeq	GI_62644040-A	ILMN_293743	FMO5	NM_144739.1	NM_144739.1		246248	21426796	NM_144739.1	Fmo5	NP_653340.1	ILMN_1376684	0006770731	S	1757	CAGTATCGTCTACAGGGCCCGGGGAAGTGGGCTGGAGCCCGAAAAACTAT	2	+	192489505-192489554	2q34	Rattus norvegicus flavin containing monooxygenase 5 (Fmo5), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IDA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657778-S	ILMN_47844	TBC1D23_PREDICTED	XM_221532.4	XM_221532.4		304019	109493057	XM_221532.4	Tbc1d23_predicted	XP_221532.2	ILMN_1361860	0005890309	S	3318	CCAAGGGGTTGGTTGATAGAAGTATCTAGGTGTACCCCACTAGTAGCCAG	11	+	44284942-44284991	11q12	PREDICTED: Rattus norvegicus TBC1 domain family, member 23 (predicted) (Tbc1d23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34860107-S	ILMN_48614	CHI3L3_PREDICTED	XM_227566.3	XM_227566.3		310771	109465406	XM_227566.3	Chi3l3_predicted	XP_227566.3	ILMN_1371425	0000780524	S	655	GGAGAAAATAGTCCCCTCTATCAATCTCCATTCGACACCGGAAAGTATGC	2	-	201479226-201479275	2q34	PREDICTED: Rattus norvegicus chitinase 3-like 3 (predicted) (Chi3l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_22726186-S	ILMN_267167	GPR56	NM_152242.1	NM_152242.1		260326	22726186	NM_152242.1	Gpr56	NP_689448.1	ILMN_1371270	0001190113	S	2800	GGAGGCAGCGTTTCATCTTGACCTCAGCCTTCTAGTTGGGGAGGAGGATG	19	-	10438456-10438505	19p13	Rattus norvegicus G protein-coupled receptor 56 (Gpr56), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576912-S	ILMN_290883	OLR804	NM_001000852.1	NM_001000852.1		405142	47576912	NM_001000852.1	Olr804	NP_001000852.1	ILMN_1357982	0000060451	S	879	CTACAGCCTGCGCAACCGGGAGATCACTTCTGCCATTCACAGAGTCCTGG	4	-	70336707-70336756	4q23	Rattus norvegicus olfactory receptor 804 (Olr804), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr804	Olr804
Rattus norvegicus	RefSeq	GI_55926189-S	ILMN_278924	EAR4	NM_001007015.1	NM_001007015.1		474169	55926189	NM_001007015.1	Ear4	NP_001007016.1	ILMN_1353781	0006350687	S	169	GCACATCTATAATAGCTCCTACCCCCAATGTAATGCTGCCATGCTGCGTG	15	-	27210308-27210357	15p14	Rattus norvegicus eosinophil-associated, ribonuclease A family, member 4 (Ear4), mRNA.		The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	R15; R5; R14	R15; R5; R14
Rattus norvegicus	RefSeq	GI_6978508-S	ILMN_293292	APC	NM_012499.1	NM_012499.1		24205	6978508	NM_012499.1	Apc	NP_036631.1	ILMN_1363282	0005900594	S	8235	GAGGCCCCGGAACAGAAAGGAACTGAGACTAAAGCAGGACAGGGTAGCCC	18	+	26790036-26790085	18p12	Rattus norvegicus adenomatous polyposis coli (Apc), mRNA.	A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence ISS]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence ISS]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns [goid 7163] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The establishment, maintenance and elaboration of a pattern along a line or a point [goid 9798] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes [goid 60070] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Modulation of the activity of the enzyme protein kinase CK2 [goid 8605] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]	RATAPC	RATAPC
Rattus norvegicus	RefSeq	Rn.103276	ILMN_267922	LOC501116	XR_009511.1	XR_009511.1		501116	109519909	XR_009511.1	LOC501116		ILMN_1530509	0004920315	S	1267	ACCTCGGTTTTCTAAGAAAGGACAGCTTAATGCAGATGAGATTAGTTTGA					PREDICTED: Rattus norvegicus hypothetical LOC501116 (LOC501116), mRNA.					
Rattus norvegicus	RefSeq	GI_62641144-S	ILMN_267922	LOC501116	XR_009511.1	XR_009511.1		501116	109519909	XR_009511.1	LOC501116		ILMN_1358924	0007100471	S	1815	CTTACTTGGCACAGTTTGCGGCTCGTGCTATAATTTCAGAGTTGGTGAGC					PREDICTED: Rattus norvegicus hypothetical LOC501116 (LOC501116), mRNA.					
Rattus norvegicus	RefSeq	GI_62653872-S	ILMN_51644	RGD1311958_PREDICTED	XM_236376.4	XM_236376.4		315789	109483598	XM_236376.4	RGD1311958_predicted	XP_236376.3	ILMN_1367934	0002260309	S	2684	TGCCCGCAGAAGACACTCCGTGTTAAAGTGAGGGTACCTCGGGAGAGAGC	8	-	74545140-74545189	8q24	PREDICTED: Rattus norvegicus similar to 6430514L14Rik protein (predicted) (RGD1311958_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.23904	ILMN_51644	RGD1311958_PREDICTED	XM_236376.4	XM_236376.4		315789	109483598	XM_236376.4	RGD1311958_predicted	XP_236376.3	ILMN_1530444	0006510129	S	1750	AAAAACTGCCATGGTGATCTTTGTTTTTTGATTAAGAAGTGAATGAGTTG	8	-	74546074-74546123	8q24	PREDICTED: Rattus norvegicus similar to 6430514L14Rik protein (predicted) (RGD1311958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660053-S	ILMN_266853	LOC688538	XM_001067327.1	XM_001067327.1		688538	109513247	XM_001067327.1	LOC688538	XP_001067327.1	ILMN_1354942	0002900593	S	409	GTACTGGTCAGAAGGGCCCATCACTTGTGGAATGGCCATTGCTGCCTCTC	Un|NW_047874.1	+	475244-475293		PREDICTED: Rattus norvegicus hypothetical protein LOC688538 (LOC688538), mRNA.					
Rattus norvegicus	RefSeq	GI_62659666-S	ILMN_61989	LOC501864	XM_577279.1	XM_577279.1		501864	62659666	XM_577279.1	LOC501864	XP_577279.1	ILMN_1365595	0003390368	S	2785	TGATTGAGGTTATTGAGCGGTTGACCCGGGAGGAAGACCCTCTGATCAAG				13q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23550 (LOC501864), mRNA.					
Rattus norvegicus	RefSeq	GI_47577928-S	ILMN_288927	OLR1138	NM_001001080.1	NM_001001080.1		405970	47577928	NM_001001080.1	Olr1138	NP_001001080.1	ILMN_1350689	0004060324	S	278	CCTACACAGGCTGCCTGTCCCAGGTGTGTTTTGTACTGATTTTTGGTGGC	8	-	17293552-17293601	8q13	Rattus norvegicus olfactory receptor 1138 (Olr1138), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1138	Olr1138
Rattus norvegicus	RefSeq	GI_62653528-S	ILMN_287482	OLR1340_PREDICTED	XM_001064058.1	XM_001064058.1		300640	109484542	XM_001064058.1	Olr1340_predicted	XP_001064058.1	ILMN_1357937	0004150025	S	577	GTGGCTGCTGTCTTTTCAGTGGGCTTTACCGATGCTGTGATTCATGGGGG				8q22	PREDICTED: Rattus norvegicus olfactory receptor 1340 (predicted) (Olr1340_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923995-A	ILMN_277325	HNRPU	NM_057139.1	NM_057139.1		117280	16923995	NM_057139.1	Hnrpu	NP_476480.1	ILMN_1376257	0003390687	S	3501	CTGCTCATAATACACTCCATCCTCTCTAGATGGCCGGGCAATAGTGGAGG				13q26	Rattus norvegicus heterogeneous nuclear ribonucleoprotein U (Hnrpu), mRNA.				SN1	SN1
Rattus norvegicus	RefSeq	GI_62339356-S	ILMN_277902	PCDHB21_PREDICTED	XM_001056174.1	XM_001056174.1		307487	109506498	XM_001056174.1	Pcdhb21_predicted	XP_001056174.1	ILMN_1367082	0000380368	S	2192	TGGCGCTCGACCCTACAAACGTGGATGAGGAAGCGCTCACACTCTCCTTG	18	+	30324655-30324704	18p11	PREDICTED: Rattus norvegicus protocadherin beta 21 (predicted) (Pcdhb21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653660-S	ILMN_300186	BTG4	NM_001013176.1	NM_001013176.1		315650	61557189	NM_001013176.1	Btg4	NP_001013194.1	ILMN_1651077	0000060709	S	584	CCTCCTGGGGGCTGCTTACCACCCAATGCCCAAGAACTCTAAGTGGTGCA	8	+	54437645-54437694	8q24	Rattus norvegicus B-cell translocation gene 4 (Btg4), mRNA.		Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IEA]		SCIR-27	SCIR-27
Rattus norvegicus	RefSeq	GI_62646152-S	ILMN_274249	RGD1565299_PREDICTED	XR_009451.1	XR_009451.1		366193	109470851	XR_009451.1	RGD1565299_predicted		ILMN_1351349	0004200551	S	478	TCCTATGCGCAGCACCAGCAGGTCCGCCAGACCCAGAAGAAGATGATGGA				3q36	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3a (V -fos transformation effector protein) (predicted) (RGD1565299_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665712-S	ILMN_62529	ANKS1_PREDICTED	XM_228027.3	XM_228027.3		309639	62665712	XM_228027.3	Anks1_predicted	XP_228027.3	ILMN_1374059	0001240563	S	3909	GGGAAGGCTAGTCGGGTCACAGTCTTATTTTCCCCGAGCTGTGGTCGGTC				20p12	PREDICTED: Rattus norvegicus ankyrin repeat and SAM domain containing 1 (predicted) (Anks1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592092-S	ILMN_269545	ST13	NM_031122.1	NM_031122.1		81800	13592092	NM_031122.1	St13	NP_112384.1	ILMN_1356699	0003610707	S	1245	ACCTCTGACCTCACCAGAGAGCTGGGGCGCTTCGAAGATAATCCCTACCC	7	-	119694491-119694540	7q34	Rattus norvegicus suppression of tumorigenicity 13 (St13), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Interacting selectively with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size [goid 30544] [evidence IDA]		
Rattus norvegicus	Unigene	Rn.1619	ILMN_160550	RN.1619	Rn.1619		Rn.1619		82521366	DV728042			ILMN_1530540	0005550451	S	646	TTATTAAACAGAGCATTATTTACAGAAAGCCATTGTTGAGAATTAGTTCC					RVL20644 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62638289	ILMN_286912	LOC679873	XM_001054800.1	XM_001054800.1		679873	109457513	XM_001054800.1	LOC679873	XP_001054800.1	ILMN_1650473	0007050500	S	302	CAGGGCTGTTTGATCAGTCCAAGGGATCAACAATAACGACCTTGGATCCC	1	+	1695731-1695754:1696430-1696455	1p13	PREDICTED: Rattus norvegicus similar to retinoic acid early transcript 1L (predicted) (LOC679873), mRNA.					
Rattus norvegicus	RefSeq	GI_62658504-S	ILMN_262552	RGD1564193_PREDICTED	XR_008194.1	XR_008194.1		363877	109496523	XR_008194.1	RGD1564193_predicted		ILMN_1363986	0004920102	S	22	CCAGCTACACCCAGCATTGCTGCCATTCGAGAAGGAGTAGAGCCCTGCAG				12q11	PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2C isoform 3 (predicted) (RGD1564193_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647015-S	ILMN_69248	NUP205_PREDICTED	XM_342657.3	XM_342657.3		362335	109471852	XM_342657.3	Nup205_predicted	XP_342658.2	ILMN_1351586	0006220500	S	6161	CCCGCTATAGCTTCATACAGGCTCTTGTCAGACGTATCCGTGGTCTGCTG	4	+	62655877-62655926	4q22	PREDICTED: Rattus norvegicus nucleoporin 205kDa (predicted) (Nup205_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654888	ILMN_275723	LOC685888	XM_001062701.1	XM_001062701.1		685888	109485830	XM_001062701.1	LOC685888	XP_001062701.1	ILMN_1650963	0001090195	S	275	GGCCCAGAGCCTACACGATACGGAGACTGGGAACGGAAAGGACGCTGTAT	9	-	22713693-22713742	9q13	PREDICTED: Rattus norvegicus hypothetical protein LOC685888, transcript variant 2 (LOC685888), mRNA.					
Rattus norvegicus	RefSeq	GI_62650002-S	ILMN_58673	LOC500583	XM_575952.1	XM_575952.1		500583	62650002	XM_575952.1	LOC500583	XP_575952.1	ILMN_1373779	0003870524	S	569	ACTGTCAGGAGTGCAGGACCTACCCTGCACAGCTTCACAACAAGCTTGCT				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300003B13 (LOC500583), mRNA.					
Rattus norvegicus	RefSeq	GI_62657739-S	ILMN_65441	LOC501773	XM_577172.1	XM_577172.1		501773	62657739	XM_577172.1	LOC501773	XP_577172.1	ILMN_1353082	0002630113	S	568	GGGCTGGAGAGCATGGGTTCCTCAGAAGCTCTGCCTTTCGATTTGCTGCA					PREDICTED: Rattus norvegicus similar to ovary testis transcribed (LOC501773), mRNA.					
Rattus norvegicus	RefSeq	GI_62666945-S	ILMN_57430	LOC501585	XM_576987.1	XM_576987.1		501585	62666945	XM_576987.1	LOC501585	XP_576987.1	ILMN_1358546	0005570136	S	577	CAGCTGAGTTGCTGTTTGTCTGTCCAGAGCCTGGGTGAACTGGTTGATGG					PREDICTED: Rattus norvegicus similar to PRO1477 (LOC501585), mRNA.					
Rattus norvegicus	RefSeq	GI_62660113-S	ILMN_286249	RGD1559992_PREDICTED	XM_001058532.1	XM_001058532.1		498328	109500255	XM_001058532.1	RGD1559992_predicted	XP_001058532.1	ILMN_1372138	0006450148	S	3907	GCCACAGTCAGCAGCGGCAGTGAGACATGCTAAGGAAAAGCATGGATGGC				14p22	PREDICTED: Rattus norvegicus similar to polycystic kidney disease 2 (predicted) (RGD1559992_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653640-S	ILMN_63304	LOC500994	XM_576408.1	XM_576408.1		500994	62653640	XM_576408.1	LOC500994	XP_576408.1	ILMN_1368405	0006040577	S	1395	ACCCTGAGGTACCCGAGAGGACAAGCAAGCGCAGGAATTGGAAGGTGGCT					PREDICTED: Rattus norvegicus similar to Expressed sequence AU019823 (LOC500994), mRNA.					
Rattus norvegicus	RefSeq	GI_34872429-S	ILMN_57216	AGMAT	XM_216570.3	XM_216570.3		298607	109475752	XM_216570.3	Agmat	XP_216570.2	ILMN_1354758	0004850176	S	1003	CCGCCGTATGATCTCTCTGGAAACACAGCCCTCCTCGCGGCTAACCTACT	5	+	160659566-160659584:160660170-160660200	5q36	PREDICTED: Rattus norvegicus agmatine ureohydrolase (agmatinase) (Agmat), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane [goid 8295] [evidence IEA]; The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine [goid 9446] [evidence IEA]	Catalysis of the reaction: agmatine + H2O = putrescine + urea [goid 8783] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11177897-S	ILMN_301919	CLOCK	NM_021856.1	NM_021856.1		60447	11177897	NM_021856.1	Clock	NP_068628.1	ILMN_1353787	0002190609	S	2484	ACAGAGCACTTTCCCTCCTTCGCACCACCAGCAACACCAGCAACAGCAGC	14	+	34257946-34257995	14p11	Rattus norvegicus clock homolog (mouse) (Clock), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence NAS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEA]; The synchronization of a circadian rhythm to environmental time cues such as light [goid 9649] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657274-S	ILMN_55115	LOC498017	XM_579771.1	XM_579771.1		498017	62657274	XM_579771.1	LOC498017	XP_579771.1	ILMN_1348942	0005340132	S	345	CTTCCTGGACCATCAGAACCCCGGGAGAGCTGCTTGGATCATCTCGTGCA					PREDICTED: Rattus norvegicus LOC498017 (LOC498017), mRNA.					
Rattus norvegicus	RefSeq	GI_62646088-S	ILMN_67840	RGD1560257_PREDICTED	XM_575267.2	XM_575267.2		499923	109469060	XM_575267.2	RGD1560257_predicted	XP_575267.2	ILMN_1350434	0006940047	S	3221	TGGACCAAGAAGGACGGCACATTCGCTGGGTGGCCAGTGATAACCGGAGT	3	+	144225207-144225256	3q41	PREDICTED: Rattus norvegicus similar to hypothetical protein A630008I04 (predicted) (RGD1560257_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662059-S	ILMN_276411	ZIC2_PREDICTED	XM_001075422.1	XM_001075422.1		361096	109502888	XM_001075422.1	Zic2_predicted	XP_001075422.1	ILMN_1372996	0003140170	S	2469	GCCGTGCCAAAGTTTCCCTTCTGTTTCTTCAACACACCAACCCATAGCAC				15q25	PREDICTED: Rattus norvegicus Zic family member 2 (odd-paired homolog, Drosophila) (predicted) (Zic2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605843-S	ILMN_276612	LOC493574	NM_001008386.1	NM_001008386.1		493574	56605843	NM_001008386.1	LOC493574	NP_001008387.1	ILMN_1361559	0004210609	S	2260	CTGTCCGTGCCTATGATCTTCTGAAAAGCAGGGGGGCCAGTGAAGTGGAG	6	+	55419260-55419309	6q16	Rattus norvegicus notch1-induced protein (LOC493574), mRNA.					
Rattus norvegicus	RefSeq	GI_62642569-S	ILMN_48090	LOC502395	XM_577875.1	XM_577875.1		502395	62642569	XM_577875.1	LOC502395	XP_577875.1	ILMN_1371092	0003870082	S	864	GGTGAATATGGTTGGACCATCCCCAGGTTGCTGCCTCGTAACTGTAGTGA				1q55	PREDICTED: Rattus norvegicus similar to Carboxylesterase 2 (LOC502395), mRNA.					
Rattus norvegicus	RefSeq	GI_11120701-S	ILMN_265998	PGA5	NM_021753.1	NM_021753.1		60372	11120701	NM_021753.1	Pga5	NP_068521.1	ILMN_1355527	0003360164	S	1088	CCCTGAGTTGTGGGTGCTGGGGGATGTTTTCCTGAGGCTGTACTTCACCG	1	-	213163912-213163961	1q43	Rattus norvegicus pepsinogen 5, group I (pepsinogen A) (Pga5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Pepf	Pepf
Rattus norvegicus	RefSeq	GI_13929017-S	ILMN_276845	SCAMP4	NM_031725.1	NM_031725.1		65170	13929017	NM_031725.1	Scamp4	NP_113913.1	ILMN_1364947	0004570273	S	1455	TCTTCCTTGCGACCTGATGCTACCAGCCAAGTCACTGAGTCCCCAAGGCC	7	-	10612574-10612623	7q11	Rattus norvegicus secretory carrier membrane protein 4 (Scamp4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IDA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The specific actions or reactions of an organism that are associated with reproduction [goid 19098] [evidence NAS]			
Rattus norvegicus	RefSeq	GI_62643539	ILMN_282004	RARRES1	NM_001014790.1	NM_001014790.1		310486	62339360	NM_001014790.1	Rarres1	NP_001014790.1	ILMN_1651173	0001570411	S	560	CACATTGACCCTTCACTGAGACCCCTGTGGGACTTGGCTTTCCTCGGCAG	2	-	157338338-157338387	2q31	Rattus norvegicus retinoic acid receptor responder (tazarotene induced) 1 (Rarres1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659211	ILMN_277021	MKI67IP	NM_139186.1	NM_139186.1		246042	21070941	NM_139186.1	Mki67ip	NP_631925.1	ILMN_1650422	0005720671	S	802	AACGTTGGTGTACAAACTGGCGTGGGATCCTGGTTAGCCTCAGAATCCCC				13q11	Rattus norvegicus spermatogenesis-related protein (Srp) (Mki67ip), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_40786431-S	ILMN_287361	KRT8	NM_199370.1	NM_199370.1		25626	40786431	NM_199370.1	Krt8	NP_955402.1	ILMN_1374546	0001580021	S	1518	GTATGGCAGAGTGCAGGGAACTAGGGACCAGCCAGAGTACCAGCCCTAAA	7	-	140714000-140714049	7q36	Rattus norvegicus keratin 8 (Krt8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence IDA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix [goid 43034] [evidence IDA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IDA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor [goid 33209] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it [goid 51599] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism [goid 51707] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	CYKER; Krt8	CYKER; Krt8
Rattus norvegicus	RefSeq	GI_62638299-S	ILMN_271981	GPR126_PREDICTED	XM_001071417.1	XM_001071417.1		308376	109460465	XM_001071417.1	Gpr126_predicted	XP_001071417.1	ILMN_1375120	0000050292	S	3495	GTCCCTGTCAAAACTGACCCATGCTGGTGGAGAGCAGACATCAATCATCC				1p13	PREDICTED: Rattus norvegicus G protein-coupled receptor 126 (predicted) (Gpr126_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577990-S	ILMN_297803	OLR1087	NM_001000418.1	NM_001000418.1		299586	47577990	NM_001000418.1	Olr1087	NP_001000418.1	ILMN_1371719	0001230458	S	773	GATACTTACTGCCAGCATCCCCTAGCTCCTCTCAGAAAGACAAGGCGGCT	7	+	12544767-12544816	7q11	Rattus norvegicus olfactory receptor 1087 (Olr1087), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1087; ratchr7-12543995-12544936_ORF	Olr1087; ratchr7-12543995-12544936_ORF
Rattus norvegicus	RefSeq	GI_62653017-S	ILMN_52719	ZFP641_PREDICTED	XM_235625.4	XM_235625.4		300197	109481266	XM_235625.4	Zfp641_predicted	XP_235625.4	ILMN_1357647	0004590670	S	1118	CGGACAGCAAGTCCTGCAAGGGCCAAGAAATTGGAGAGAGTCCTGGGGCT	7	-	137024802-137024851	7q36	PREDICTED: Rattus norvegicus zinc finger protein 641 (predicted) (Zfp641_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664900	ILMN_67362	LOC498916	XM_574206.1	XM_574206.1		498916	62664900	XM_574206.1	LOC498916	XP_574206.1	ILMN_1650217	0001660446	S	216	TGGGAAAATGGCGACTCCTGCACGTTCTCCAGAGTTGCTGCTGTCCAAGG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC498916), mRNA.					
Rattus norvegicus	RefSeq	GI_8393468-S	ILMN_287300	S1PR2	NM_017192.1	NM_017192.1		29415	8393468	NM_017192.1	S1pr2	NP_058888.1	ILMN_1372410	0004760671	S	2411	ATCAGTGTGGGGTCTGTGACCTCCTATCCCAGTGTGGGTGCTGTCTGACC	8	-	19990153-19990202	8q13	Rattus norvegicus sphingosine-1-phosphate receptor 2 (S1pr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]	Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]	Gpcr13; snGPCR18; H218; GPCR18	Gpcr13; snGPCR18; H218; GPCR18
Rattus norvegicus	RefSeq	GI_24308469-A	ILMN_293209	MRGPRF	NM_153722.1	NM_153722.1		266762	24308469	NM_153722.1	Mrgprf	NP_714944.1	ILMN_1376679	0004060504	S	1509	GGTAGGGTCCCCTCCTCAACAGAAGCTCATGAACGAAGGCAACAAGGAGG	1	+	205759436-205759485	1q42	Rattus norvegicus MAS-related GPR, member F (Mrgprf), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgF	MrgF
Rattus norvegicus	RefSeq	GI_13592086-S	ILMN_271046	SOAT1	NM_031118.1	NM_031118.1		81782	13592086	NM_031118.1	Soat1	NP_112380.1	ILMN_1350250	0005130019	S	1692	TCCGGCCACGGACCTGGACTTGTCGTTACGTGTTTTAGAAGCCCTGGCTC	13	-	71420870-71420882:71420883-71420919	13q21	Rattus norvegicus sterol O-acyltransferase 1 (Soat1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence TAS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]	Catalysis of the reaction: phosphatidylcholine + a sterol = a sterol ester + 1-acylglycerophosphocholine [goid 4607] [evidence IEP]; Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester [goid 4772] [evidence IDA]; Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester [goid 4772] [evidence IEA]; Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester [goid 4772] [evidence ISS]; Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester [goid 4772] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Acat-1	Acat-1
Rattus norvegicus	RefSeq	GI_62651012-A	ILMN_287415	SP4	NM_012761.1	NM_012761.1		25162	6981571	NM_012761.1	Sp4	NP_036893.1	ILMN_1376532	0001740242	S	3229	ACGCTGGGGAAAATTTGCTAGCACAGAATGGATGGAAGCCTCAGAAAGGC	6	-	145553692-145553741	6q33	Rattus norvegicus Sp4 transcription factor (Sp4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	HF-1b	HF-1b
Rattus norvegicus	RefSeq	GI_40789242-S	ILMN_64068	FEZ2	NM_053600.2	NM_053600.2		94269	77020285	NM_053600.2	Fez2	NP_446052.2	ILMN_1366361	0003120133	S	862	GGCAGCTCTCAGAATGGGAGGAATGAGAGAAGTCACATGCCAGGCACACG	6	-	1152899-1152901:1166944-1166990	6q11	Rattus norvegicus fasciculation and elongation protein zeta 2 (zygin II) (Fez2), mRNA.		Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence TAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC112579; Zrp	MGC112579; Zrp
Rattus norvegicus	RefSeq	GI_62645248	ILMN_49260	SCRN3_PREDICTED	XM_230990.3	XM_230990.3		311731	62645248	XM_230990.3	Scrn3_predicted	XP_230990.2	ILMN_1650272	0001500017	S	1780	GGCTTCTTCAGCACACAGCTCTCATCATGCCTCTCTATGCCACGGCTGCC				3q22	PREDICTED: Rattus norvegicus secernin 3 (predicted) (Scrn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659014-S	ILMN_263847	RGD1565883_PREDICTED	XM_001080384.1	XM_001080384.1		498193	109497490	XM_001080384.1	RGD1565883_predicted	XP_001080384.1	ILMN_1359330	0004280014	S	1672	CGCTGGAGTATCTCATCAACGACATCCGGCCACCCTGCATCAAGGAACAG				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14721 (predicted) (RGD1565883_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114247-S	ILMN_268560	V1RJ3	NM_001008935.1	NM_001008935.1		494282	57114247	NM_001008935.1	V1rj3	NP_001008935.1	ILMN_1355320	0002230315	S	629	GCAGGCACCAAAAAAGAGCCAAACATCTCCGCAACCCAAACCTCTCCTCC	1	+	73671598-73671647	1q21	Rattus norvegicus vomeronasal 1 receptor, J3 (V1rj3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_46485386-S	ILMN_287331	NAPRT1	NM_207609.1	NM_207609.1		315085	46485386	NM_207609.1	Naprt1	NP_997492.1	ILMN_1368181	0006650082	S	1657	GGCACTGGTGGACAGTCTGAGTGCTCGAGGTGCCCTGTGAAAAAGATCAC	7	-	113865417-113865428:113865429-113865466	7q34	Rattus norvegicus nicotinate phosphoribosyltransferase domain containing 1 (Naprt1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IDA]; The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base [goid 19363] [evidence IEA]	Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence IDA]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence ISS]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758369-S	ILMN_295939	PSMB1	NM_053590.1	NM_053590.1		94198	16758369	NM_053590.1	Psmb1	NP_446042.1	ILMN_1357406	0000670593	S	711	GGAGGAGACTGTTCCCCTTCGGAAAGACTGATGTGGGGCCAGGGTTTGGA	1	-	54369813-54369832:54369833-54369862	1q12	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 1 (Psmb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659456-S	ILMN_48888	LOC498249	XM_573473.1	XM_573473.1		498249	62659456	XM_573473.1	LOC498249	XP_573473.1	ILMN_1362977	0003290239	S	701	CTATTAAAAATGTTCTAAATGGCAAATACTGAACATACAAATAACTAAAA				13q21	PREDICTED: Rattus norvegicus similar to Rbbp8 protein (LOC498249), mRNA.					
Rattus norvegicus	RefSeq	GI_62649953-S	ILMN_55846	LOC366486	XM_345592.2	XM_345592.2		366486	62649953	XM_345592.2	LOC366486	XP_345593.2	ILMN_1366644	0007050368	S	380	GGCCTTGGAGGACCCGGAGACAAACCTGCTGAGAGGACTGAAAAGGACCA					PREDICTED: Rattus norvegicus similar to mitochondrial ATP synthase coupling factor 6 (LOC366486), mRNA.					
Rattus norvegicus	RefSeq	GI_62662465-S	ILMN_277557	CILP2_PREDICTED	XM_001071604.1	XM_001071604.1		306356	109504020	XM_001071604.1	Cilp2_predicted	XP_001071604.1	ILMN_1363477	0005220279	S	3364	AGGCTGCTGGAGAACCCCGCATCGGCGCTTGGCGACATTCGTAGGGAGAT				16p14	PREDICTED: Rattus norvegicus cartilage intermediate layer protein 2 (predicted) (Cilp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981635-A	ILMN_279305	TCF12	NM_013176.1	NM_013176.1		25720	6981635	NM_013176.1	Tcf12	NP_037308.1	ILMN_1376542	0004570692	S	2275	CAGGAACCCATCCTGGGCTTAGTGAGACAACCAACCCTATGGGTCATCTG				8q24	Rattus norvegicus transcription factor 12 (Tcf12), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	SCBPA	SCBPA
Rattus norvegicus	RefSeq	GI_62339391-S	ILMN_281040	KPNA3	NM_001014792.1	NM_001014792.1		361055	62339391	NM_001014792.1	Kpna3	NP_001014792.1	ILMN_1366672	0001850411	S	1616	CCAGATGGCCACCAAGCGATAAGACAGCAAGCAACAGAAGGCTCCCAGCA	15	-	40513623-40513672	15p12	Rattus norvegicus karyopherin (importin) alpha 3 (Kpna3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	importin	importin
Rattus norvegicus	RefSeq	GI_62663140-S	ILMN_268529	RGD1559950_PREDICTED	XM_001065029.1	XM_001065029.1		498686	109505369	XM_001065029.1	RGD1559950_predicted	XP_001065029.1	ILMN_1356259	0003390156	S	167	CGCCGACAAAATATCATCGTCGTCAAAGGGTTCATCTCCGTAAGAGCCAG				17p14	PREDICTED: Rattus norvegicus similar to STELLA (predicted) (RGD1559950_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27436860-S	ILMN_299791	APP	NM_019288.1	NM_019288.1		54226	27436860	NM_019288.1	App	NP_062161.1	ILMN_1360376	0003440500	S	2247	CTGTGACCCCGGAGGAGCGCCACCTCTCCAAGATGCAGCAGAATGGATAT	11	-	24457898-24457947	11q11	Rattus norvegicus amyloid beta (A4) precursor protein (App), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm [goid 35253] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The area in the center of the spindle where the spindle microtubules from opposite poles overlap [goid 51233] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Progression through G2 phase, one of two 'gap' phases in the mitotic cell cycle; G2 is the interval between the completion of DNA synthesis and the beginning of mitosis [goid 85] [evidence ISS]; Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence ISS]; The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript [goid 6378] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; Any process that modulates the frequency, rate or extent of EGF receptor activity [goid 7176] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The directed movement of organelles or molecules along microtubules in nerve cell axons [goid 8088] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; The recognition of molecules at the central nervous system midline choice point by an axon growth cone; this choice point determines whether the growth cone will cross the midline [goid 16199] [evidence ISS]; The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development [goid 16322] [evidence ISS]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which outgrowths develop from the axons of intact undamaged neurons [goid 48669] [evidence ISS]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The growth of a synapse at a neuromuscular junction, the site of apposition of a motor end plate and the subneural cleft of the skeletal muscle fiber that it innervates [goid 51124] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the smooth endoplasmic reticulum of a cell or between the smooth endoplasmic reticulum and its surroundings [goid 51563] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Increases the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 16504] [evidence IDA]; Interacting selectively with an acetylcholine receptor [goid 33130] [evidence ISS]; Interacting selectively with an acetylcholine receptor [goid 33130] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9461550] [evidence IPI]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645643-S	ILMN_299376	LOC688018	XR_009418.1	XR_009418.1		688018	109470686	XR_009418.1	LOC688018		ILMN_1359825	0006370041	S	5774	TCCAGACGCTGAAGTGTCGCTGGAGGAACTGTGATGCTTTTTTCACAGCC					PREDICTED: Rattus norvegicus similar to SH3-domain binding protein 3 (LOC688018), mRNA.					
Rattus norvegicus	RefSeq	GI_16758245-S	ILMN_65905	PEX11A	NM_053487.1	NM_053487.1		85249	16758245	NM_053487.1	Pex11a	NP_445939.1	ILMN_1374596	0006900270	S	1046	CACGGCAGTAACTTCTGCACATTTCCCCTTCAGTGACTTCTGACTACTGC				1q31	Rattus norvegicus peroxisomal biogenesis factor 11A (Pex11a), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The assembly and arrangement of the membrane of a peroxisome [goid 16557] [evidence IDA]; The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments [goid 16559] [evidence IEA]		Pmp26p	Pmp26p
Rattus norvegicus	RefSeq	GI_62078952-S	ILMN_286749	LOC317471	NM_001014112.1	NM_001014112.1		317471	62078952	NM_001014112.1	LOC317471	NP_001014134.1	ILMN_1354278	0005220239	S	1959	GGAACCACCAGCAGATCGACTCCTTTTAACCCTTCCTCAACTGTACCTCC	X	+	48660455-48660504	Xq21	Rattus norvegicus similar to hypothetical protein MGC35182 (LOC317471), mRNA.					
Rattus norvegicus	RefSeq	GI_62645391-S	ILMN_278951	SLC39A13	NM_001039196.1	NM_001039196.1		295928	85861167	NM_001039196.1	Slc39a13	NP_001034285.1	ILMN_1352832	0002260338	S	2117	GGCCCCTTGTCCTTTGGGTTAAGTGTAAGACGGGGGTGGTGAAGGCTCCA	3	-	75421396-75421445	3q24	Rattus norvegicus solute carrier family 39 (metal ion transporter), member 13 (Slc39a13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]	MGC124816	MGC124816
Rattus norvegicus	RefSeq	GI_62646054-S	ILMN_66024	LOC311536	XM_230720.2	XM_230720.2		311536	62646054	XM_230720.2	LOC311536	XP_230720.2	ILMN_1350396	0003290097	S	1449	ACAGCGAGTACTGGGCCTCCTCTTGGGAGCTGTTCGCGGCATCTTCCTTT				3q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310046K01 (predicted) (LOC311536), mRNA.					
Rattus norvegicus	RefSeq	GI_34860667-S	ILMN_275831	LOC295487	XR_009184.1	XR_009184.1		295487	109467690	XR_009184.1	LOC295487		ILMN_1359485	0000060154	S	175	GTGAGCACACTCACAGAGATCATCAAGGCCTGTGGGAAGCCAAAGGTGGT				2q43	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC295487), mRNA.					
Rattus norvegicus	RefSeq	GI_62665710-S	ILMN_62446	LOC309637	XM_228025.3	XM_228025.3		309637	62665710	XM_228025.3	LOC309637	XP_228025.3	ILMN_1368247	0004540593	S	6353	AGCCTTGCTGAGGGAGCAGGGATCAGTGAGATGCTGTGGTCTAAAGCCCG				20p12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted) (LOC309637), mRNA.					
Rattus norvegicus	RefSeq	GI_62643378-S	ILMN_67834	PLK4_PREDICTED	XM_227064.4	XM_227064.4		310344	109464713	XM_227064.4	Plk4_predicted	XP_227064.4	ILMN_1363662	0005860121	S	2684	ACAGTGGAAGGACCTGGCCAAACAGCAGCTACTACAGGAACAAGCATCTC	2	+	127776098-127776147	2q26	PREDICTED: Rattus norvegicus polo-like kinase 4 (Drosophila) (predicted) (Plk4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638600-S	ILMN_57647	LOC365104	XM_344817.2	XM_344817.2		365104	62638600	XM_344817.2	LOC365104	XP_344818.2	ILMN_1356812	0000540400	S	384	GGTGTTGGCCCTGGAGTACACCTGCAGCTTGGTGTTGGCCCTGGTGTACA					PREDICTED: Rattus norvegicus similar to hypothetical protein cgd4_1450 (LOC365104), mRNA.					
Rattus norvegicus	RefSeq	GI_62645483-S	ILMN_277630	QSER1_PREDICTED	XM_001079597.1	XM_001079597.1		311266	109470426	XM_001079597.1	Qser1_predicted	XP_001079597.1	ILMN_1364101	0007000341	S	4358	CGTCTCCTGAGGTCCGTTCTAGCAGTAGTGAGGATGAGGGCTTTGAGCCT				3q32	PREDICTED: Rattus norvegicus glutamine and serine rich 1 (predicted) (Qser1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656085-S	ILMN_70394	HINT1_PREDICTED	XM_231925.3	XM_231925.3		312393	62656085	XM_231925.3	Hint1_predicted	XP_231925.3	ILMN_1363602	0005390091	S	68	ACAGCCGGAGACGCTCCGCATAGCAACCAATCAGAATGCACGGCTGCGGC					PREDICTED: Rattus norvegicus histidine triad nucleotide binding protein 1 (predicted) (Hint1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646388-S	ILMN_278780	SULF2	XM_001072989.1	XM_001072989.1		311642	109471354	XM_001072989.1	Sulf2	XP_001072989.1	ILMN_1366184	0006590546	S	3512	AGAGTCGCGGTGTCAATAAACACTCTGTGGCTGGTGTCAAGGGTAATCCC				3q42	PREDICTED: Rattus norvegicus sulfatase 2 (Sulf2), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence IEA]; Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_61557292-S	ILMN_265825	DNAJB6	NM_001013209.1	NM_001013209.1		362293	61557292	NM_001013209.1	Dnajb6	NP_001013227.1	ILMN_1370974	0003170154	S	2303	GCTGTGTTTGCTTGGTTTTGGTGGGAGGAGGTGTGGGCACTTATGGAGTG	4	-	732588-732637	4q11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 6 (Dnajb6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Functions to increase the rate of ATP hydrolysis [goid 1671] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57114249-S	ILMN_268087	V1RE14	NM_001008936.1	NM_001008936.1		494283	57114249	NM_001008936.1	V1re14	NP_001008936.1	ILMN_1366598	0005360195	S	605	CCTGGTCCAGTGGCTACATGATTTTCATTCTGTATGTACACAAGAGGAGG	1	-	62590381-62590430	1q12	Rattus norvegicus vomeronasal 1 receptor, E14 (V1re14), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_14091745-S	ILMN_265157	DLL1	NM_032063.1	NM_032063.1		84010	14091745	NM_032063.1	Dll1	NP_114452.1	ILMN_1363310	0001050195	S	2485	GATATAGCCCCGAGGAATGCTGCTGAGAGAGGAACCGGAGAGGAAACCCC	1	-	54240651-54240700	1q12	Rattus norvegicus delta-like 1 (Drosophila) (Dll1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence TAS]; The process by which individual somites establish identity during embryogenesis [goid 1757] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence IEA]; The regionalization process by which embryonic segments are divided into compartments that will result in differences in cell differentiation [goid 7386] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The process by which the cellular identity of auditory hair cells is acquired and determined [goid 9912] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of auditory hair cell differentiation [goid 45608] [evidence IEA]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEA]	Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence TAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence ISS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence IPI]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302060	ILMN_274262	ATP5O	NM_138883.1	NM_138883.1		192241	20302060	NM_138883.1	Atp5o	NP_620238.1	ILMN_1650362	0005720035	S	622	CAAGGCCATGCGGGATCTGCTCTGAGAGACTGTCACCTGTGTGAGCGCTT	11	-	31914355-31914380:31914381-31914404	11q11	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (Atp5o), nuclear gene encoding mitochondrial protein, mRNA.	All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins [goid 276] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence TAS]	The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The transport of protons across a mitochondrial membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 42776] [evidence IEA]; The transport of protons across a mitochondrial membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 42776] [evidence ISS]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	MGC72688; Atpo; Oscp	MGC72688; Atpo; Oscp
Rattus norvegicus	RefSeq	GI_62650857-S	ILMN_58035	LOC366629	XM_345675.2	XM_345675.2		366629	62650857	XM_345675.2	LOC366629	XP_345676.2	ILMN_1364583	0001230091	S	1018	GGCCTTTGAGAGTCTGGTCCCACTTCAGCCGCTATCCTTTATTTCATGGG					PREDICTED: Rattus norvegicus similar to TAR DNA binding protein (LOC366629), mRNA.					
Rattus norvegicus	RefSeq	GI_62643047-S	ILMN_297441	LOC499541	XM_574864.1	XM_574864.1		499541	62643047	XM_574864.1	LOC499541	XP_574864.1	ILMN_1371459	0001580332	S	301	GGCCGGTCATCCCTCTCAGGATCTGTTATTAGAATGCCTTTGGGTCAGCT	2	-	61069359-61069408	2q16	PREDICTED: Rattus norvegicus LRRGT00045 (LOC499541), mRNA.					
Rattus norvegicus	RefSeq	GI_62652591-S	ILMN_53657	SLURP1_PREDICTED	XM_216966.3	XM_216966.3		300016	109480882	XM_216966.3	Slurp1_predicted	XP_216966.1	ILMN_1366039	0002120066	S	350	GGTGACAGGCCTCTAGCCACACAGGGACCCTCGTTCTTCCTGCATCTACT	7	-	112840882-112840916:112840917-112840931	7q34	PREDICTED: Rattus norvegicus secreted Ly6/Plaur domain containing 1 (predicted) (Slurp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653354-S	ILMN_274452	BMPER_PREDICTED	XM_001053312.1	XM_001053312.1		300455	109484394	XM_001053312.1	Bmper_predicted	XP_001053312.1	ILMN_1353604	0000130095	S	2835	GACACGGAAGAGCCAATGAAGGACTGTAGTATTTGTGTGCCTGATTCTGC				8q13	PREDICTED: Rattus norvegicus BMP-binding endothelial regulator (predicted) (Bmper_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576612-S	ILMN_274587	OLR85	NM_001000138.1	NM_001000138.1		293228	47576612	NM_001000138.1	Olr85	NP_001000138.1	ILMN_1349736	0001500403	S	386	GCAACCCACTTCGATACAGTACCATCCTCACCAACAAGGCAGTTTCCATG	1	+	160977656-160977705	1q32	Rattus norvegicus olfactory receptor 85 (Olr85), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161056238-161057173_ORF; Olr85	ratchr1-161056238-161057173_ORF; Olr85
Rattus norvegicus	RefSeq	GI_62641137-S	ILMN_48608	LOC308934	XM_219240.3	XM_219240.3		308934	62641137	XM_219240.3	LOC308934	XP_219240.3	ILMN_1352215	0000070121	S	5946	GCGGCCACCCTTTACAGCCAGTACACATCCAAGAACGACGAGAACAGAGG					PREDICTED: Rattus norvegicus similar to SET binding factor 2 (LOC308934), mRNA.					
Rattus norvegicus	Unigene	Rn.35367	ILMN_161201	RN.35367	Rn.35367		Rn.35367		33086665	AY325244			ILMN_1530234	0002970411	S	2263	CATTTGGAAGCCCATGACCTACATTAATTTTATTACTTCTTTACAGATTT					Rattus norvegicus Cc1-38 mRNA, complete					
Rattus norvegicus	RefSeq	GI_62661556-S	ILMN_272870	LATS2_PREDICTED	XM_001063422.1	XM_001063422.1		305922	109502522	XM_001063422.1	Lats2_predicted	XP_001063422.1	ILMN_1373182	0006450039	S	2790	TCAAGGCACACCCGTTCTTCAGCACCATCGACTTTTCCCGTGACATCCGG				15p12	PREDICTED: Rattus norvegicus large tumor suppressor 2 (predicted) (Lats2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647745-S	ILMN_58581	HIRIP5_PREDICTED	XM_216202.3	XM_216202.3		297416	62647745	XM_216202.3	Hirip5_predicted	XP_216202.3	ILMN_1374451	0003800368	S	1535	ATGGTAGCTGAGGAGTAGCTGGGCAAGGGAGCCATGGAGGCAGTGAGAAG				4q34	PREDICTED: Rattus norvegicus histone cell cycle regulation defective interacting protein 5 (predicted) (Hirip5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19924078-S	ILMN_284267	DNASE2A	NM_138539.1	NM_138539.1		171575	19924078	NM_138539.1	Dnase2a	NP_612548.1	ILMN_1370782	0000940438	S	1185	GGGGAGCTGACTGGAAGCCCAACAGAACAAAGAACTCAGGGACTGGCTTG	19	-	24901126-24901175	19q11	Rattus norvegicus deoxyribonuclease II alpha (Dnase2a), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one [goid 6308] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one [goid 6308] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks [goid 4520] [evidence IDA]; Catalysis of the endonucleolytic cleavage of DNA to 3'-phosphodinucleotide and 3'-phosphooligonucleotide end products [goid 4531] [evidence ISS]; Catalysis of the endonucleolytic cleavage of DNA to 3'-phosphodinucleotide and 3'-phosphooligonucleotide end products [goid 4531] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Dnase2a	Dnase2a
Rattus norvegicus	RefSeq	GI_62666924	ILMN_56349	EIF2S3X	XM_216704.4	XM_216704.4		299027	109510777	XM_216704.4	Eif2s3x	XP_216704.2	ILMN_1650549	0006110021	S	1963	CATGTAGCCCAACCCACTCATCCCCGCATATCTGACCTTGCAACCTCCCC	X	-	81544832-81544881	Xq31	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked (Eif2s3x), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664163-S	ILMN_67975	RGD1561764_PREDICTED	XM_574115.2	XM_574115.2		364835	109506407	XM_574115.2	RGD1561764_predicted	XP_574115.2	ILMN_1348790	0005570148	S	747	GCGGAGTCCGTGCGCTTGAAGCACCTGTCAAGAACTGATGAGCAGGAGGT	18	-	24331944-24331993	18p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC5391 (predicted) (RGD1561764_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41281690	ILMN_55618	PPP1R2	NM_138823.2	NM_138823.2		192361	62461583	NM_138823.2	Ppp1r2	NP_620178.1	ILMN_1650527	0002260131	S	477	CGGACTCGGGAACAAGAAAGCAGTGGAGAGGAAGACAATGACCTCTCCCC	11	+	71335194-71335243	11q22	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 2 (Ppp1r2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]; Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein [goid 43666] [evidence IEA]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	IPP-2; MGC105260	IPP-2; MGC105260
Rattus norvegicus	RefSeq	GI_62659618-S	ILMN_262468	SLC19A2	NM_001030024.1	NM_001030024.1		289175	71795618	NM_001030024.1	Slc19a2	NP_001025195.1	ILMN_1365726	0006590014	S	1602	AATGCAGAAAGCAGGAAGATCCCAACTCCAGCCCTCAAGCAACCACTTCC	13	+	80030200-80030249	13q22	Rattus norvegicus solute carrier family 19 (thiamine transporter), member 2 (Slc19a2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of thiamin into, out of, within or between cells. Thiamin is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver [goid 15888] [evidence IEA]; The directed movement of thiamin into, out of, within or between cells. Thiamin is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver [goid 15888] [evidence ISS]; The chemical reactions and pathways involving thiamin (vitamin B1), and compounds derived from it [goid 42723] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IEA]; Catalysis of the transfer of reduced folate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8518] [evidence IEA]; Catalysis of the transfer of thiamin from one side of the membrane to the other. Thiamin is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver [goid 15234] [evidence IEA]; Catalysis of the transfer of thiamin from one side of the membrane to the other. Thiamin is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver [goid 15234] [evidence ISS]	MGC124887	MGC124887
Rattus norvegicus	RefSeq	GI_62647062-S	ILMN_283427	HYAL4	XM_578235.1	XM_578235.1		404783	62647062	XM_578235.1	Hyal4	XP_578235.1	ILMN_1356004	0003840088	S	1312	TATGAGGGCTATGAGGGGGCTGACTGTAGAGATATGACAGAGGCCAGTGG	4	+	51247683-51247732	4q22	PREDICTED: Rattus norvegicus hyaluronoglucosaminidase 4 (Hyal4), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars [goid 6027] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence TAS]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647712-S	ILMN_270631	RGD1566130_PREDICTED	XM_001073977.1	XM_001073977.1		312504	109473822	XM_001073977.1	RGD1566130_predicted	XP_001073977.1	ILMN_1353585	0006760377	S	2619	TGGAACTGGACCACGTGTCAGAGATTACCCAGGAGGTGGCGGCAGAGGTC				4q34	PREDICTED: Rattus norvegicus similar to mKIAA1940 protein (predicted) (RGD1566130_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665390-S	ILMN_69288	LOC292074	XM_214703.3	XM_214703.3		292074	62665390	XM_214703.3	LOC292074	XP_214703.1	ILMN_1366963	0001690458	S	1	GTCACATGATGCAGCGCACAGCCTGCCAATATGGCGGTGTGCATCGCGGT				19q12	PREDICTED: Rattus norvegicus similar to hypothetical protein, 2-6 (predicted) (LOC292074), mRNA.					
Rattus norvegicus	RefSeq	GI_62644914-S	ILMN_55443	GPR107_PREDICTED	XM_231134.4	XM_231134.4		311857	109468015	XM_231134.4	Gpr107_predicted	XP_231134.3	ILMN_1363148	0005050746	S	1622	ACATGAAGAAGGTGAAGAAAGTGAGCAATGGTGCTGTGGAGCCCCAGGGC	3	+	10272234-10272283	3p12	PREDICTED: Rattus norvegicus G protein-coupled receptor 107 (predicted) (Gpr107_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718081-S	ILMN_64525	LOC301957	XM_229459.4	XM_229459.4		301957	109513143	XM_229459.4	LOC301957	XP_229459.3	ILMN_1352325	0006590647	S	672	TGGGCCATGCCTACCTGATCCAAAGAGGCAGATGGAATTTGAAGCCCAAG	Un|NW_047867.1	-	113350-113375:116470-116493		PREDICTED: Rattus norvegicus similar to EF hand calcium binding domain 1 (LOC301957), mRNA.					
Rattus norvegicus	RefSeq	Rn.7685	ILMN_276476	PGRMC2	NM_001008374.1	NM_001008374.1		361940	56605823	NM_001008374.1	Pgrmc2	NP_001008375.1	ILMN_1530371	0006450390	S	1292	TCTAAGATTTGAAAGAAGGATTTCCAGTAGATTAAAGTCAACAGTTCCCA	2	-	128025564-128025613	2q26	Rattus norvegicus progesterone receptor membrane component 2 (Pgrmc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	MGC93874	MGC93874
Rattus norvegicus	RefSeq	GI_56605823-S	ILMN_276476	PGRMC2	NM_001008374.1	NM_001008374.1		361940	56605823	NM_001008374.1	Pgrmc2	NP_001008375.1	ILMN_1360328	0007050750	S	1735	GAGTCTGGATGTCTGTGAGAGCACCTTGGGAGGGACTCTTCCTGCAATGC	2	-	128025121-128025170	2q26	Rattus norvegicus progesterone receptor membrane component 2 (Pgrmc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	MGC93874	MGC93874
Rattus norvegicus	RefSeq	GI_62666704-S	ILMN_67884	LOC315372	XM_235746.3	XM_235746.3		315372	62666704	XM_235746.3	LOC315372	XP_235746.3	ILMN_1365720	0003170601	S	1419	CTGAAGCAGGAACAGAAGAACAGTGTCTCAGCAGATGAAGGGAATTCACC					PREDICTED: Rattus norvegicus similar to leucine-rich repeats and calponin homology (CH) domain containing 2 (LOC315372), mRNA.					
Rattus norvegicus	RefSeq	GI_47059111-S	ILMN_267975	EHMT2	NM_212463.1	NM_212463.1		361798	47059111	NM_212463.1	Ehmt2	NP_997628.1	ILMN_1366228	0002480427	S	3823	CCCTCAGACATTCCCCCATCGGAGGACCCCAGTAAGGCCTGGAAGGTTTA				20p12	Rattus norvegicus euchromatic histone lysine N-methyltransferase 2 (Ehmt2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Progression through the third stage of prophase I in meiosis, in which crossing over occurs between a chromatid in one partner and another chromatid in the homologous chromosome [goid 239] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The cell cycle process whereby the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination [goid 7130] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone [goid 51567] [evidence ISS]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives [goid 18024] [evidence IEA]	Ng36; G9a; Bat8	Ng36; G9a; Bat8
Rattus norvegicus	RefSeq	GI_62659900-S	ILMN_298976	RGD1561315_PREDICTED	XR_008187.1	XR_008187.1		498303	109499213	XR_008187.1	RGD1561315_predicted		ILMN_1353293	0001240100	S	339	TTGAACACATCCAGGTGAACACTGATGAACTTACAGAGCTCATGGCCGGA				13q26	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (predicted) (RGD1561315_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605703-S	ILMN_302901	SERINC3	NM_001008312.1	NM_001008312.1		296350	56605703	NM_001008312.1	Serinc3	NP_001008313.1	ILMN_1365634	0003520446	S	1963	GTGTGTAGGTCCTTCCCCAGAAATGCAGCTGCTCATGAGGCTGAAAGAAG	3	-	154539925-154539974	3q42	Rattus norvegicus serine incorporator 3 (Serinc3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways involving phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. They are important constituents of cell membranes [goid 6658] [evidence ISS]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor [goid 51347] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence ISS]	Tde1; MGC94574	Tde1; MGC94574
Rattus norvegicus	RefSeq	GI_62643384-S	ILMN_267326	LOC499602	NM_001025039.1	NM_001025039.1		499602	68226712	NM_001025039.1	LOC499602	NP_001020210.1	ILMN_1370298	0002690136	S	419	GTGGTGCAAGCCAAAGAGGATGCCTATATTCCGCGAACAGGAGTTCGGAG	2	+	127872857-127872906	2q26	Rattus norvegicus hypothetical protein LOC499602 (LOC499602), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62643301-S	ILMN_64166	PRKCI	XM_342223.3	XM_342223.3		84006	109464703	XM_342223.3	Prkci	XP_342224.2	ILMN_1369025	0006220184	S	2348	CGCGCTCCCTGTCTGTGAAAGCAGCAAGTGTGCTGAAGAGTTTCCTCAAC	2	-	116748358-116748407	2q24	PREDICTED: Rattus norvegicus protein kinase C, iota (Prkci), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The specification and formation of the polarity of a cell along its apical/basal axis [goid 35089] [evidence ISS]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells [goid 45216] [evidence ISS]; The evagination of the Golgi membrane, resulting in formation of a vesicle [goid 48194] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA];  [goid 4700] [evidence ISS];  [goid 4700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662710-S	ILMN_265434	RGD1564316_PREDICTED	XM_001065601.1	XM_001065601.1		498638	109504245	XM_001065601.1	RGD1564316_predicted	XP_001065601.1	ILMN_1355078	0004560168	S	1094	CCATGAGGGCCGAGTAGAGATCTTCCACGAAGGCCAGTGGGGCACAATCT				16q12.1	PREDICTED: Rattus norvegicus similar to scavenger receptor type A SR-A (predicted) (RGD1564316_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644285-S	ILMN_263111	SEC24D_PREDICTED	XM_001075384.1	XM_001075384.1		310843	109467557	XM_001075384.1	Sec24d_predicted	XP_001075384.1	ILMN_1349335	0002320088	S	3047	AGTGAAGCAGCGAGAGCAGCGGGAGATGGTTTTCCGACAGTTCCTGGTGG				2q42	PREDICTED: Rattus norvegicus SEC24 related gene family, member D (S. cerevisiae) (predicted) (Sec24d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742782-S	ILMN_287938	PLK1	NM_017100.1	NM_017100.1		25515	25742782	NM_017100.1	Plk1	NP_058796.1	ILMN_1369432	0000630601	S	1848	CCATGGTAGACAAGCTGCTGAGCTCGCGTTCCGCCTGCAACCGCCTCAAG				1q36	Rattus norvegicus polo-like kinase 1 (Drosophila) (Plk1), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The area in the center of the spindle where the spindle microtubules from opposite poles overlap [goid 51233] [evidence IDA]	Progression through prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region. Kinetochores mature on each centromere and attach to some of the spindle microtubules. Kinetochore microtubules begin the process of aligning chromosomes in one plane halfway between the poles [goid 236] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cell cycle process whereby two small cells are generated, as byproducts destined to degenerate, as a result of the first and second meiotic divisions of a primary oocyte during its development to a mature ovum. One polar body is formed in the first division of meiosis and the other in the second division; at each division, the cytoplasm divides unequally, so that the polar body is of much smaller size than the developing oocyte. At the second division in which a polar body is formed, the polar body and the developing oocyte each contain a haploid set of chromosomes [goid 40038] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence IEP]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Plk	Plk
Rattus norvegicus	RefSeq	GI_62644474-S	ILMN_54983	LOC365951	XM_575049.1	XM_575049.1		365951	62644474	XM_575049.1	LOC365951	XP_575049.1	ILMN_1348965	0000580373	S	487	CTGTCCGGCATCTCTGCACTGCTGAATTGAGTGCTGACCTGTTCCGTGGC				2q44	PREDICTED: Rattus norvegicus similar to heat shock protein 8 (LOC365951), mRNA.					
Rattus norvegicus	RefSeq	GI_34853647-S	ILMN_271703	LOC682004	XM_001059323.1	XM_001059323.1		682004	109472906	XM_001059323.1	LOC682004	XP_001059323.1	ILMN_1370233	0005550692	S	476	GGCCAGTGGATCTACGTTTCAACAAAGCCCATTTCACACACCCTGAGCTG					PREDICTED: Rattus norvegicus similar to TGF beta-inducible nuclear protein 1 (L-name-related protein 42) (LNR42) (LOC682004), mRNA.					
Rattus norvegicus	RefSeq	GI_25742833-S	ILMN_276353	HS3ST1	NM_053391.1	NM_053391.1		84406	25742833	NM_053391.1	Hs3st1	NP_445843.1	ILMN_1366157	0002350040	S	649	CACATCGTGGATGGCGACCGTTTCATCAGAGACCCTTTCCCTGAGATCCA	14	+	76438867-76438916	14q21	Rattus norvegicus heparan sulfate (glucosamine) 3-O-sulfotransferase 1 (Hs3st1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks [goid 5796] [evidence IEA]		Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate, with a substrate consensus sequence of Glc(N2S>NAc)+/-6S GlcA GlcN2S*+/-6S GlcA>IdoA+/-2S Glc(N2S/NAc)+/-6S [goid 8467] [evidence NAS]; Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate, with a substrate consensus sequence of Glc(N2S>NAc)+/-6S GlcA GlcN2S*+/-6S GlcA>IdoA+/-2S Glc(N2S/NAc)+/-6S [goid 8467] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718060-S	ILMN_272373	LOC501283	XM_001061544.1	XM_001061544.1		501283	109486625	XM_001061544.1	LOC501283	XP_001061544.1	ILMN_1368925	0001570142	S	1158	TGCCTGTGTGGATGAGTTCCTGGATTTGGTCCTTCGAGCCATGCCACTGG					PREDICTED: Rattus norvegicus similar to lipid droplet associated protein (LOC501283), mRNA.					
Rattus norvegicus	RefSeq	GI_62667391-S	ILMN_59580	LOC367924	XM_579030.1	XM_579030.1		367924	62667391	XM_579030.1	LOC367924	XP_579030.1	ILMN_1366164	0001780433	S	97	GGCAAGGTTATGTCTACCTTCATGGAGGGAGTGGGGGAACTGAGTGGACC					PREDICTED: Rattus norvegicus similar to cyclin D binding myb-like transcription factor 1 (LOC367924), mRNA.					
Rattus norvegicus	RefSeq	GI_62644300-S	ILMN_264867	RGD1563340_PREDICTED	XR_009031.1	XR_009031.1		310893	109467576	XR_009031.1	RGD1563340_predicted		ILMN_1367857	0004780139	S	337	CCTCCCGCAAACAGCGAAAGGAACGCAAGAGCAAGATGAAGAAGGTCAGG				2q42	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (predicted) (RGD1563340_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657924-S	ILMN_272854	RGD1565413_PREDICTED	XR_008688.1	XR_008688.1		288089	109494431	XR_008688.1	RGD1565413_predicted		ILMN_1355530	0005860132	S	185	TCACTGGTAACATCTCCATCCGAGGTCGGATCCTGCTGCTCGTCATGATG				11q21	PREDICTED: Rattus norvegicus similar to ribosomal protein S11 (predicted) (RGD1565413_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882590-S	ILMN_51723	LOC501347	XM_576758.1	XM_576758.1		501347	62718275	XM_576758.1	LOC501347	XP_576758.1	ILMN_1363034	0002100070	S	158	GAACCTAGACGCTGGGAGAGAAACATCATCCCCTGGAACTGCCCTAAGCG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501347), mRNA.					
Rattus norvegicus	RefSeq	GI_62659568-S	ILMN_56969	LOC498259	XM_573484.1	XM_573484.1		498259	62659568	XM_573484.1	LOC498259	XP_573484.1	ILMN_1366351	0001780100	S	1432	CATTTGGATTAGAGTTCATCCCGCTGCCAGTGAGCACCCCATGGAATTGC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498259), mRNA.					
Rattus norvegicus	RefSeq	GI_31341203-S	ILMN_267523	SPG7	NM_181388.2	NM_181388.2		353231	31341203	NM_181388.2	Spg7	NP_852053.1	ILMN_1362003	0003830524	S	2066	GAGCCTACAGACACACTGAGAAGGTGCTGCTGGACAACCTGGACAAGCTG	19	+	53432186-53432235	19q12	Rattus norvegicus spastic paraplegia 7 homolog (human) (Spg7), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEA]; The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons [goid 8089] [evidence ISS]; The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons [goid 8089] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55926210-S	ILMN_279287	HSF2	NM_031694.2	NM_031694.2		64441	55926210	NM_031694.2	Hsf2	NP_113882.1	ILMN_1365182	0002370142	S	2225	CAGAAAAGGCAGCGTACACGAGTAATCAGTCACTCTGAAGTGGTACTAGC	20	+	36538434-36538483	20q11	Rattus norvegicus heat shock factor 2 (Hsf2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence NAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656456-S	ILMN_67427	RGD1564224_PREDICTED	XM_577106.2	XM_577106.2		501703	109488337	XM_577106.2	RGD1564224_predicted	XP_577106.2	ILMN_1355592	0004230377	S	759	CAGATACACCACAGCCCAGGTGGAGATGCCAAGAGCGCAGAAAGGCAGTC	10	+	54508970-54509019	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC18079 (predicted) (RGD1564224_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652260-S	ILMN_270210	RGD1566181_PREDICTED	XM_001055773.1	XM_001055773.1		500847	109482067	XM_001055773.1	RGD1566181_predicted	XP_001055773.1	ILMN_1356795	0004610647	S	803	CGGACCCAACCTACCTGACTAGGGTGCAAGAGGAACTGAGAGCCAAGGGT				7q22	PREDICTED: Rattus norvegicus similar to Deltex3 (predicted) (RGD1566181_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649146	ILMN_59624	RGD1306981_PREDICTED	XM_233112.4	XM_233112.4		298185	109475052	XM_233112.4	RGD1306981_predicted	XP_233112.4	ILMN_1650540	0002570070	S	6203	CCGACTACTGTCACGTCTTGGTCACAAGGCAGAAAGGCACCTGGGCCACA	5	-	101784927-101784976	5q31	PREDICTED: Rattus norvegicus similar to bM410K19.2.2 (novel protein similar to extra-cellular matrix proteins and chondroitin sulfate proteoglycans, variant 2) (predicted) (RGD1306981_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663554-S	ILMN_55968	LOC497715	XM_579560.1	XM_579560.1		497715	62663554	XM_579560.1	LOC497715	XP_579560.1	ILMN_1367296	0004210019	S	10938	GCCCTGTGACAGCTGTCTCTGCTAGTGAAACATCGGGTGATATTGCTACT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053518 (LOC497715), mRNA.					
Rattus norvegicus	RefSeq	GI_34861097-S	ILMN_291486	RGD1306300_PREDICTED	XM_001054745.1	XM_001054745.1		361664	109463049	XM_001054745.1	RGD1306300_predicted	XP_001054745.1	ILMN_1367272	0004480494	S	875	GGCTGCACAGATTGAATACCGATAATGGGTTGGTGGGAAGCCACAAGCAG				1q41	PREDICTED: Rattus norvegicus similar to CG9643-PA (predicted) (RGD1306300_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643981-S	ILMN_284546	RGD1564915_PREDICTED	XM_578033.1	XM_578033.1		502547	62643981	XM_578033.1	RGD1564915_predicted	XP_578033.1	ILMN_1355304	0006040484	S	1032	AACCCTGGCTTCTATACAGTGTTTTTCCTTGGAGCCCTCACTCAAATGCC	2	+	186906737-186906786	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1564915_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648282-S	ILMN_281356	RGD1560652_PREDICTED	XM_001072453.1	XM_001072453.1		500352	109474412	XM_001072453.1	RGD1560652_predicted	XP_001072453.1	ILMN_1351809	0005860035	S	191	GAAACTGTGACCTCATCATCCAAGCCGTGACAAAAATCCAGAAGGAGCTG				4q43	PREDICTED: Rattus norvegicus RGD1560652 (predicted) (RGD1560652_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560025-S	ILMN_278342	STC2	NM_022230.1	NM_022230.1		63878	11560025	NM_022230.1	Stc2	NP_071566.1	ILMN_1372521	0004070132	S	629	CCATCCTGAGTTTCTGCACCTCCAACATACAGAGACCCCCTACCGCAGCC	10	+	16524088-16524137	10q12	Rattus norvegicus stanniocalcin 2 (Stc2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639060-S	ILMN_272283	LOC678741	XM_001053214.1	XM_001053214.1		678741	109458248	XM_001053214.1	LOC678741	XP_001053214.1	ILMN_1366695	0003390093	S	5771	CCGCTTGAATCCCCACTTGCCGTCAGGCCACACTCGTAAAGAAAGATTGT	1	+	76695240-76695289	1q21	PREDICTED: Rattus norvegicus similar to Zinc finger CCCH-type domain containing protein 6 (LOC678741), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659534-S	ILMN_55392	LOC305101	XM_223116.3	XM_223116.3		305101	62659534	XM_223116.3	LOC305101	XP_223116.3	ILMN_1365745	0001190136	S	5066	GCTGTACTCAGGGCTCCTTGGGGTAGGGGATGAGATCCTGGAGATGAACG				13q21	PREDICTED: Rattus norvegicus similar to 6820428L09 protein (predicted) (LOC305101), mRNA.					
Rattus norvegicus	RefSeq	GI_62658709-S	ILMN_266500	LOC686428	XM_001069996.1	XM_001069996.1		686428	109497074	XM_001069996.1	LOC686428	XP_001069996.1	ILMN_1360807	0000940056	S	1522	GACTCCCTATGTGGAACTGGGCATCAGGCAGGGACAGTTGTGGAGGACTC					PREDICTED: Rattus norvegicus similar to Emu2 (LOC686428), mRNA.					
Rattus norvegicus	RefSeq	GI_47576952-S	ILMN_268162	OLR795	NM_001000601.1	NM_001000601.1		404789	47576952	NM_001000601.1	Olr795	NP_001000601.1	ILMN_1354250	0004060368	S	581	CATTGGAGTTTATGGTTACTGCCAATAGTGGGTTCATTTCTGTGGTCTCC	3	+	97995133-97995182	3q34	Rattus norvegicus olfactory receptor 795 (Olr795), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr795	Olr795
Rattus norvegicus	RefSeq	GI_62654308-S	ILMN_50632	RGD1562645_PREDICTED	XM_578756.2	XM_578756.2		503229	109483933	XM_578756.2	RGD1562645_predicted	XP_578756.1	ILMN_1349065	0004200373	S	206	GGTGGCGGTCAATGCAAACCAAGATAGTGGAGCAGAAGAGGCGCTTGGCG	8	+	111820822-111820871	8q32	PREDICTED: Rattus norvegicus similar to IQ motif containing F1 (predicted) (RGD1562645_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577208-S	ILMN_283963	OLR363	NM_001000754.1	NM_001000754.1		405025	47577208	NM_001000754.1	Olr363	NP_001000754.1	ILMN_1366817	0003520440	S	780	CCTACAGCCCAGCTCCAGTCATTCCATGGATAATGACAAAATTGCCTCTG	1	+	216506432-216506481	1q43	Rattus norvegicus olfactory receptor 363 (Olr363), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr363	Olr363
Rattus norvegicus	RefSeq	GI_62642861-S	ILMN_64702	LOC502502	XM_580251.1	XM_580251.1		502502	62642861	XM_580251.1	LOC502502	XP_580251.1	ILMN_1361258	0002680068	S	471	CCTACTGCGTGTCCCAACCAGAAGACATGGACATTTGTGGACAGGGTGTG					PREDICTED: Rattus norvegicus LOC502502 (LOC502502), mRNA.					
Rattus norvegicus	RefSeq	GI_34858931-S	ILMN_288897	RGD1566383_PREDICTED	XR_007651.1	XR_007651.1		362233	109470993	XR_007651.1	RGD1566383_predicted		ILMN_1360546	0007040440	S	261	TGTGGGTACATGGAGGAATCTAGTATAGAGGAGGAAGGTGCCCCAGAAGC				3q41	PREDICTED: Rattus norvegicus similar to Cystatin S precursor (LM protein) (predicted) (RGD1566383_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675866-S	ILMN_282684	PPAP2B	NM_138905.2	NM_138905.2		192270	48675866	NM_138905.2	Ppap2b	NP_620260.2	ILMN_1361266	0005910097	S	2473	GTGTCCTTCCAAGCAAGGTCCCACTCTAGCCAGTAGACAAGGTCCCTTCT	5	+	126196491-126196540	5q34	Rattus norvegicus phosphatidic acid phosphatase type 2B (Ppap2b), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence ISS]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a phospholipid + H2O = a lipid + phosphate [goid 42577] [evidence IEA]; Catalysis of the reaction: a phospholipid + H2O = a lipid + phosphate [goid 42577] [evidence ISS]; Catalysis of the reaction: a phospholipid + H2O = a lipid + phosphate [goid 42577] [evidence IEA]	Dri42	Dri42
Rattus norvegicus	RefSeq	GI_62650924-S	ILMN_279127	RGD1562299_PREDICTED	XM_001080948.1	XM_001080948.1		299169	109479567	XM_001080948.1	RGD1562299_predicted	XP_001080948.1	ILMN_1373669	0000780494	S	733	TGGACTCCTTGGAGCAGGACGAGCAAACAGATACAGAGAACATCGCGCTT				6q24	PREDICTED: Rattus norvegicus similar to taube nuss (predicted) (RGD1562299_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659562-S	ILMN_56685	ASTN1	XM_222785.4	XM_222785.4		304900	109498078	XM_222785.4	Astn1	XP_222785.4	ILMN_1365263	0001450440	S	6708	CGTTGCTGGAGGACTTTTGCCCTCAGAGAGATGCATATCACACCCTGCCA	13	+	73967037-73967086	13q22	PREDICTED: Rattus norvegicus astrotactin 1 (Astn1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659560-S	ILMN_56685	ASTN1	XM_222785.4	XM_222785.4		304900	109498078	XM_222785.4	Astn1	XP_222785.4	ILMN_1350214	0006510372	S	1033	GGATGGCTATGAGTATGACATCACAGACCTGCGTCACCACCTGCAGAGGG	13	+	73791868-73791917	13q22	PREDICTED: Rattus norvegicus astrotactin 1 (Astn1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11120727-S	ILMN_302644	TRPC3	NM_021771.1	NM_021771.1		60395	11120727	NM_021771.1	Trpc3	NP_068539.1	ILMN_1359758	0002230341	S	2661	GGTGCTTGGTAAATGTTGAACCCAGCTGGCCTGGACAGCCAGTAGCATCC				2q25	Rattus norvegicus transient receptor potential cation channel, subfamily C, member 3 (Trpc3), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5227] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Trrp3	Trrp3
Rattus norvegicus	RefSeq	GI_12018245-S	ILMN_291736	TSPAN2	NM_022589.1	NM_022589.1		64521	12018245	NM_022589.1	Tspan2	NP_072111.1	ILMN_1370492	0005860048	S	3401	GGCCCCATTGACATGCTCTTGAACACCAAGCCTGTTTCCCATACCCAGGA	2	+	197902547-197902596	2q34	Rattus norvegicus tetraspanin 2 (Tspan2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEP]	The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence IEP]	Tspan-2	Tspan-2
Rattus norvegicus	RefSeq	GI_47576250-S	ILMN_276190	OLR1308	NM_001000795.1	NM_001000795.1		405079	47576250	NM_001000795.1	Olr1308	NP_001000795.1	ILMN_1370950	0000130671	S	246	TCTTTCTGGTAGGAGCCCAGGAATCTCTTACAAAGGATGTGCTGCCCAGC	8	+	42482318-42482367	8q22	Rattus norvegicus olfactory receptor 1308 (Olr1308), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1308	Olr1308
Rattus norvegicus	RefSeq	GI_62659184-S	ILMN_51009	LOC297865	XM_232716.3	XM_232716.3		297865	62659184	XM_232716.3	LOC297865	XP_232716.3	ILMN_1368312	0001500519	S	4791	CATGTATCCCATTGAGTGAACAGGCTGCTAATGGCTGCAAAAGTTGAAGG				13p12	PREDICTED: Rattus norvegicus similar to NCAG1 (predicted) (LOC297865), mRNA.					
Rattus norvegicus	RefSeq	GI_62643957-S	ILMN_50691	LOC502541	XM_580253.1	XM_580253.1		502541	62643957	XM_580253.1	LOC502541	XP_580253.1	ILMN_1372375	0006020010	S	917	GCTCCTGTCTTCAGCCTCCTCCTATGGCGTAGAAGCTGTGAGGCCAAACA				2q34	PREDICTED: Rattus norvegicus LOC502541 (LOC502541), mRNA.					
Rattus norvegicus	RefSeq	GI_62651905-S	ILMN_65506	LOC691922	XM_343193.3	XM_343193.3		691922	109480416	XM_343193.3	LOC691922	XP_343194.3	ILMN_1368517	0005860176	S	1416	GGAGCAGATGCAGGTCCACAGAGATGCTCAGTCACAGCTGGTTTTGCAGG	7	+	23454371-23454383:23461484-23461520	7q13	PREDICTED: Rattus norvegicus similar to CG1814-PA, isoform A (LOC691922), mRNA.					
Rattus norvegicus	RefSeq	GI_62660624-S	ILMN_279829	CNO	XM_001063389.1	XM_001063389.1		364183	109500827	XM_001063389.1	Cno	XP_001063389.1	ILMN_1358489	0003140725	S	1109	CAGGCGGGCCATGGAGGAAGGACCCGCGTTGTAAACCAACGGAAACAAGA				14q21	PREDICTED: Rattus norvegicus cappuccino homolog (mouse) (Cno), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored [goid 32438] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored [goid 32438] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662651-S	ILMN_50390	RGD1309765_PREDICTED	XM_224848.4	XM_224848.4		290746	109503373	XM_224848.4	RGD1309765_predicted	XP_224848.3	ILMN_1349657	0006180082	S	3597	TCCTCTGATGGCTGGGTACCAACAGCTACCATCGCTCAACATCAACCTGC	16	+	47986702-47986751	16q11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1309765_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663178-S	ILMN_273369	RGD1565218_PREDICTED	XR_008432.1	XR_008432.1		498697	109505429	XR_008432.1	RGD1565218_predicted		ILMN_1359587	0002470671	S	1044	ACCCAAGGCGATCCGCAGCGTGGAGTGCTATGATTTTGAGGAGGGCCGCT				17p14	PREDICTED: Rattus norvegicus similar to Kelch-like protein 3 (predicted) (RGD1565218_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643072-S	ILMN_52778	LOC499551	XM_574876.1	XM_574876.1		499551	62643072	XM_574876.1	LOC499551	XP_574876.1	ILMN_1363707	0005900079	S	156	AAGCGGAAGAAACGCCGCTGCAGGAAAAAATAGGTATGCCCCGGAGGACG					PREDICTED: Rattus norvegicus similar to LRRGT00094 (LOC499551), mRNA.					
Rattus norvegicus	RefSeq	GI_62663552-S	ILMN_55798	LOC497714	XM_579730.1	XM_579730.1		497714	62663552	XM_579730.1	LOC497714	XP_579730.1	ILMN_1355127	0006940092	S	1060	GGAGGCTTATGCATCTCATCCAGACAGTTTATGTGTACGGTTTGCTTCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by AF548544; NM_198792 (LOC497714), mRNA.					
Rattus norvegicus	RefSeq	GI_62638688-S	ILMN_61944	LOC502247	XM_577706.1	XM_577706.1		502247	62638688	XM_577706.1	LOC502247	XP_577706.1	ILMN_1360489	0006650129	S	1371	GGCCAGAAGGCTCATCCAAAAGGAGGAAGAAGCATCTTCAGTGAGAAGAG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502247), mRNA.					
Rattus norvegicus	RefSeq	GI_57526941-S	ILMN_294833	POP4	NM_001009642.1	NM_001009642.1		292831	57526941	NM_001009642.1	Pop4	NP_001009642.1	ILMN_1365269	0006860725	S	874	ACCCTGAGTGTTCACTTTTCCTTGAAGAACCTCTGGCTGTAGCCCGCCTC	1	-	90749347-90749396	1q22	Rattus norvegicus processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) (Pop4), mRNA.	A ribonucleoprotein complex that cleaves the rRNA precursor as part of rRNA transcript processing. It also has other roles: In S. cerevisiae it is involved in cell cycle-regulated degradation of daughter cell-specific mRNAs, while in mammalian cells it also enters the mitochondria and processes RNAs to create RNA primers for DNA replication [goid 172] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules [goid 5655] [evidence IEA]; A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs [goid 30677] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner [goid 6379] [evidence IEA]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor [goid 4526] [evidence IEA]; Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA [goid 4540] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC108830	MGC108830
Rattus norvegicus	RefSeq	GI_47606352-S	ILMN_294715	OLR81	NM_001001271.1	NM_001001271.1		293224	47606352	NM_001001271.1	Olr81	NP_001001271.1	ILMN_1361421	0004200397	S	659	ATGGATACATTCTTCATGCTGTGTTCCGCCTCCCATCTCATGATGCACGG	1	+	160923212-160923261	1q32	Rattus norvegicus olfactory receptor 81 (Olr81), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr81	Olr81
Rattus norvegicus	RefSeq	GI_62650875-S	ILMN_299404	RGD1565716_PREDICTED	XM_001077512.1	XM_001077512.1		299129	109479339	XM_001077512.1	RGD1565716_predicted	XP_001077512.1	ILMN_1357703	0002940369	S	4069	GTTCCCTGCTGACTCTTCATCTGGAGGAAAACAGGCTCCGAGAGCTGAGC				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921529O18 (predicted), transcript variant 1 (RGD1565716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11968161-S	ILMN_48351	CMKLR1	NM_022218.2	NM_022218.2		60669	83035130	NM_022218.2	Cmklr1	NP_071554.2	ILMN_1361690	0002340592	S	1105	GAGGACACAGGACCCTCCTCCTACCCCAGTCACAGGAGCTTCACCAAGAT	12	+	44059618-44059667	12q16	Rattus norvegicus chemokine-like receptor 1 (Cmklr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	 [goid 1637] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with anaphylatoxin C5a to initiate a change in cell activity [goid 4944] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667193-S	ILMN_48504	LOC503453	XM_579003.1	XM_579003.1		503453	62667193	XM_579003.1	LOC503453	XP_579003.1	ILMN_1355896	0001780609	S	2568	ACACCTGTGGATCTGTGGGACAGGCTCCTCTGTGAAATACCAGAAGCCAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC503453), mRNA.					
Rattus norvegicus	RefSeq	GI_62078984-S	ILMN_300068	NOC4L	NM_001014129.1	NM_001014129.1		360828	62078984	NM_001014129.1	Noc4l	NP_001014151.1	ILMN_1365127	0000130215	S	1473	GGACCTGAAGAAGATGATGCCTGAGTCTGTGCCCCTGGAGTTCATCCCAG	12	+	46164912-46164961	12q16	Rattus norvegicus nucleolar complex associated 4 homolog (S. cerevisiae) (Noc4l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1310661	RGD1310661
Rattus norvegicus	RefSeq	GI_62641833-S	ILMN_284383	RGD1563402_PREDICTED	XR_008839.1	XR_008839.1		309188	109463461	XR_008839.1	RGD1563402_predicted		ILMN_1368823	0002230040	S	385	TGATTGCTGCTCCTGCCCTTACTGCACCAAGCCAACCAGGAGAGGATGAA				1q43	PREDICTED: Rattus norvegicus similar to Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 (predicted) (RGD1563402_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31343432-S	ILMN_264166	HS3ST2	NM_181370.2	NM_181370.2		293451	31343432	NM_181370.2	Hs3st2	NP_852035.1	ILMN_1371347	0001090750	S	2081	GTGACTTCAAAGCCTGTGGTGTCCACTGTGCTCGGAGGACGATGTCTTTG	1	+	180324519-180324568	1q36	Rattus norvegicus heparan sulfate (glucosamine) 3-O-sulfotransferase 2 (Hs3st2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IDA]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate, with a substrate consensus sequence of Glc(N2S>NAc)+/-6S GlcA GlcN2S*+/-6S GlcA>IdoA+/-2S Glc(N2S/NAc)+/-6S [goid 8467] [evidence TAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate; modifies selected glucosamine residues preceded by GlcA2S [goid 33871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663196-S	ILMN_68570	CATSPER3_PREDICTED	XM_225156.3	XM_225156.3		290989	62663196	XM_225156.3	Catsper3_predicted	XP_225156.3	ILMN_1358936	0000940735	S	910	GGGGGTGCAGCGACTCCATCAAAAAGTTCGAGCGGGAGATGACATTGGAG				17p14	PREDICTED: Rattus norvegicus cation channel, sperm associated 3 (predicted) (Catsper3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18373317	ILMN_265962	NR5A1	XM_001054966.1	XM_001054966.1		83826	109469822	XM_001054966.1	Nr5a1	XP_001054966.1	ILMN_1649975	0004150341	S	1406	TTCCTGAACAACCACAGCCTGGTAAAGGACGCCCAGGAGAAGGCCAACGC				3q11	PREDICTED: Rattus norvegicus nuclear receptor subfamily 5, group A, member 1, transcript variant 1 (Nr5a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence IEA]; The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence IEP]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence IEA]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence IEA]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process by which a protein is maintained in the nucleus and prevented from moving elsewhere. These include sequestration within the nucleus, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the nucleus [goid 51457] [evidence IEA]; Any process by which a protein is maintained in the nucleus and prevented from moving elsewhere. These include sequestration within the nucleus, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the nucleus [goid 51457] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650883-S	ILMN_59205	LOC503032	XM_578553.1	XM_578553.1		503032	62650883	XM_578553.1	LOC503032	XP_578553.1	ILMN_2040689	0003390307	S	271	ATTGCCGCACTGTGGCCTTCGGAATCGCGGGTGAAGACGCTCGCCGTCCA				6q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC503032), mRNA.					
Rattus norvegicus	RefSeq	GI_62664121-S	ILMN_272941	INO80C	NM_001017446.1	NM_001017446.1		291737	62945247	NM_001017446.1	Ino80c	NP_001017446.1	ILMN_1374006	0006860563	S	2035	GGGAAGAGATCACAGGGCTTGACCCATCATCAGATAGGCTCAGGTGGCCT	18	-	15864000-15864049	18p12	Rattus norvegicus INO80 complex subunit C (Ino80c), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC109171	MGC109171
Rattus norvegicus	RefSeq	GI_62649744-S	ILMN_68125	PUM1_PREDICTED	XM_342928.3	XM_342928.3		362609	109475572	XM_342928.3	Pum1_predicted	XP_342929.3	ILMN_1363515	0004590133	S	3677	TGTCCCGCTGACCTCACTGACCCTGGCAGATCCAACCAGCAACCAGAGAT	5	-	149531753-149531802	5q36	PREDICTED: Rattus norvegicus pumilio 1 (Drosophila) (predicted) (Pum1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138614-S	ILMN_263006	SC5DL	NM_053642.2	NM_053642.2		114100	52138614	NM_053642.2	Sc5dl	NP_446094.1	ILMN_1363277	0000670333	S	1856	CCCTGCAGCAATGAATGGATAATGCTAGACATGAGCTTGTGGCACCCAGG	8	-	45230245-45230294	8q22	Rattus norvegicus sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like (Sc5dl), mRNA.		The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: 5-alpha-cholest-7-en-3-beta-ol + O2 = cholesta-5,7-dien-3-beta-ol + H2O2 [goid 50046] [evidence TAS]	MGC93101	MGC93101
Rattus norvegicus	RefSeq	GI_62718642-S	ILMN_50793	LOC367607	XM_346224.2	XM_346224.2		367607	62718642	XM_346224.2	LOC367607	XP_346225.2	ILMN_1355318	0003290215	S	463	CTAGCCTAGTTGTAACCAAAGTCCTGGCTTCAGTATCCAGTACCACGGAC					PREDICTED: Rattus norvegicus similar to SSXB7 protein (LOC367607), mRNA.					
Rattus norvegicus	RefSeq	GI_62654253-S	ILMN_47836	HEMK1_PREDICTED	XM_217259.4	XM_217259.4		300989	109483941	XM_217259.4	Hemk1_predicted	XP_217259.3	ILMN_1358579	0002900193	S	1241	TCACCCTGCATGGAGTGCTGCCCAGGGGGAGGTGTACAACGCTTTCCTGA	8	-	112568624-112568673	8q32	PREDICTED: Rattus norvegicus HemK methyltransferase family member 1 (predicted) (Hemk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30578395-A	ILMN_271762	CYP27A1	NM_178847.1	NM_178847.1		301517	30578395	NM_178847.1	Cyp27a1	NP_849178.1	ILMN_1376833	0006350458	S	2127	GTCACGATGCCAGATTCAACAGGGGACCTCTCTGCCCTTCCCATAGACAC				9q33	Rattus norvegicus cytochrome P450, family 27, subfamily a, polypeptide 1 (Cyp27a1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 6706] [evidence TAS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the hydroxylation of C-25 of calciferol (vitamin D3) to form 25-hydroxycalciferol [goid 30343] [evidence IDA]; Catalysis of the hydroxylation of cholesterol at position 26 of the side chain, to produce 26-hydroxycholesterol [goid 31073] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: 5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol + NADPH + O2 = 5-beta-cholestane-3-alpha,7-alpha,12-alpha,26-tetraol + NADP+ + H2O [goid 47749] [evidence IEA]	Cyp27; P450C27	Cyp27; P450C27
Rattus norvegicus	RefSeq	GI_57164112-S	ILMN_298319	NSDHL	NM_001009399.1	NM_001009399.1		309262	57164112	NM_001009399.1	Nsdhl	NP_001009399.1	ILMN_1362261	0007000097	S	1279	CTGAGCTGCATGCCCCTTGCTGGTTAGATGACAGCATACTTGACTCCCTC	X	+	158954467-158954516	Xq37	Rattus norvegicus NAD(P) dependent steroid dehydrogenase-like (Nsdhl), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-beta-hydroxy-4-beta-methyl-5-alpha-cholesta-8,24-dien-4-alpha-carboxylate + NAD(P)+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + CO2 + NAD(P)H [goid 252] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + 3-beta-hydroxy-4-alpha-methyl-5-alpha-cholest-7-ene-4-beta-carboxylate = NAD(P)H + H+ + CO2 + 4-alpha-methyl-5-alpha-cholest-7-en-3-one [goid 47012] [evidence IEA]	MGC105618	MGC105618
Rattus norvegicus	RefSeq	GI_16758191-S	ILMN_274907	HDAC3	NM_053448.1	NM_053448.1		84578	16758191	NM_053448.1	Hdac3	NP_445900.1	ILMN_1373574	0003130725	S	1522	GGTCTCTGGAACATTATGGGTAATGAGCCCTAGCAGCTGACCCCAGCCCC	18	-	30857337-30857386	18p11	Rattus norvegicus histone deacetylase 3 (Hdac3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]	Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643187-S	ILMN_58288	LOC502519	XM_578003.1	XM_578003.1		502519	62643187	XM_578003.1	LOC502519	XP_578003.1	ILMN_1351633	0005670273	S	147	CTCACATTTACAAAAGAGATGGCGCAGCAGGAGGGAACGAGGCTGAAGCC					PREDICTED: Rattus norvegicus similar to RPL27 protein (LOC502519), mRNA.					
Rattus norvegicus	RefSeq	GI_62659196-S	ILMN_51560	LOC297846	XM_232694.3	XM_232694.3		297846	62659196	XM_232694.3	LOC297846	XP_232694.3	ILMN_1371272	0006220528	S	3236	TCTGGCTATCTTGCTTTCCAGAAATGAGACTCTTGGGTTGGACCCAGAAG				13p12-p11	PREDICTED: Rattus norvegicus similar to contactin associated protein-like 5 isoform 1 (LOC297846), mRNA.					
Rattus norvegicus	RefSeq	GI_62718209-S	ILMN_48192	LOC501324	XM_580188.1	XM_580188.1		501324	62718209	XM_580188.1	LOC501324	XP_580188.1	ILMN_1369728	0006940110	S	69	AAAGGAGCACTGCTCACAGGCCTGACAGCGGCTTCTGGGCATCGGCCTCT					PREDICTED: Rattus norvegicus LOC501324 (LOC501324), mRNA.					
Rattus norvegicus	RefSeq	GI_27671638-S	ILMN_49453	RGD1561932_PREDICTED	XM_213312.2	XM_213312.2		287346	109488118	XM_213312.2	RGD1561932_predicted	XP_213312.2	ILMN_1373796	0001500091	S	360	GATCAACCCAGATCGTCAGGACCGCAGGTTGAACCACTTCAGAGTCTACC	10	-	45022408-45022457	10q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561932_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27658633-S	ILMN_66266	RGD1564492_PREDICTED	XM_574204.2	XM_574204.2		498914	109507774	XM_574204.2	RGD1564492_predicted	XP_574204.2	ILMN_2039934	0006100767	S	155	CGTCTCTGGACGTGGTGGATGAGAAGATCTCTGCGAAGGGGAAAGCACTG	19	-	14186948-14186997	19p11	PREDICTED: Rattus norvegicus similar to hypothetical protein, 2-6 (predicted) (RGD1564492_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34864890-S	ILMN_53656	LOC362882	XM_343210.1	XM_343210.1		362882	34864890	XM_343210.1	LOC362882	XP_343211.1	ILMN_1374674	0003440446	S	359	GTTCGAAACACCAGCAAAGGAGAGACATTCTCAGCCTGGGCACTGCGAGC					PREDICTED: Rattus norvegicus similar to Lysozyme C, type 2 precursor (1,4-beta-N-acetylmuramidase C) (LOC362882), mRNA.					
Rattus norvegicus	RefSeq	GI_6981573-S	ILMN_285006	SPARC	NM_012656.1	NM_012656.1		24791	6981573	NM_012656.1	Sparc	NP_036788.1	ILMN_1356384	0006660750	S	1680	CAACTGCTATAGGGCTTTCAGGCTCTTGCTGGGAGCTCTAGGCACTGGGC	10	-	40810029-40810078	10q22	Rattus norvegicus secreted protein, acidic, cysteine-rich (osteonectin) (Sparc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus [goid 9629] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus [goid 33591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IEP]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666323-S	ILMN_68932	PRDM1_PREDICTED	XM_228320.4	XM_228320.4		309871	109509655	XM_228320.4	Prdm1_predicted	XP_228320.4	ILMN_1373994	0001980603	S	2407	CGAGAGGTTCGACCTTAGCGACAACGCTGACCGTCTTGAGGACATGGAGG	20	-	48440926-48440975	20q13	PREDICTED: Rattus norvegicus PR domain containing 1, with ZNF domain (predicted) (Prdm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657677-S	ILMN_62341	DSCR3_PREDICTED	XM_340974.3	XM_340974.3		360703	109492947	XM_340974.3	Dscr3_predicted	XP_340975.1	ILMN_1360950	0006220739	S	894	GGGGAAGTTGACCCCAAGTCCTGTTGACTTCACGATCACCCCGGAAACCT	11	-	34780533-34780582	11q11	PREDICTED: Rattus norvegicus Down syndrome critical region gene 3 (predicted) (Dscr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718762-S	ILMN_264527	LOC691406	XM_001078110.1	XM_001078110.1		691406	109513918	XM_001078110.1	LOC691406	XP_001078110.1	ILMN_1356028	0000540292	S	338	TGTGGAACGCTGGGAGAGAAACATCATACCCTGGCACTGAACTAAGCAAG	Un|NW_047968.1	-	116485-116529:117561-117565		PREDICTED: Rattus norvegicus similar to Myosin-9B (Myosin IXb) (Unconventional myosin-9b) (LOC691406), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12408287-S	ILMN_288945	PRL8A2	NM_022846.1	NM_022846.1		24315	12408287	NM_022846.1	Prl8a2	NP_074037.1	ILMN_1351507	0004810433	S	292	GCCAGATATCACTGCCCTTCTAACAGCACAAACCCACCACTTCATGGACC	17	-	44208393-44208442	17p11	Rattus norvegicus prolactin family 8, subfamily a, member 2 (Prl8a2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; A reproductive process occurring in the mother that allows an embryo or fetus to develop within it [goid 60135] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	d/tPRP; Dprp; Dtprp	d/tPRP; Dprp; Dtprp
Rattus norvegicus	RefSeq	GI_46485455-S	ILMN_291464	ADIPOR1	NM_207587.1	NM_207587.1		289036	46485455	NM_207587.1	Adipor1	NP_997470.1	ILMN_1374105	0003120324	S	1768	CCTGGTCCCATCTTTCTAGGACAAACAAAGCCACGCCTTGATGTAGCCCG	13	+	47379305-47379354	13q13	Rattus norvegicus adiponectin receptor 1 (Adipor1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_11067370-S	ILMN_275416	LTB4R	NM_021656.1	NM_021656.1		59264	11067370	NM_021656.1	Ltb4r	NP_067688.1	ILMN_1350542	0000670110	S	875	TGCTTCGTTCGGCGGGCGTGGGCTTCGTAGTCAAGCTGCTCGAGGGCACT	15	+	33929600-33929649	15p13	Rattus norvegicus leukotriene B4 receptor (Ltb4r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with leukotriene B4, LTB4, to initiate a change in cell activity. Leukotriene B4 is also known as (6Z, 8E, 10E, 14Z)-(5S, 12R)-5,12-dihydroxyicosa-6,8,10,14-tetraen-1-oate [goid 1632] [evidence ISS]; Combining with leukotriene B4, LTB4, to initiate a change in cell activity. Leukotriene B4 is also known as (6Z, 8E, 10E, 14Z)-(5S, 12R)-5,12-dihydroxyicosa-6,8,10,14-tetraen-1-oate [goid 1632] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a leukotriene to initiate a change in cell activity. Leukotrienes are pharmacologically active substances with a set of three conjugated double bonds; some contain a peptide moiety based on cysteine [goid 4974] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62642431-I	ILMN_64076	CNNM2_PREDICTED	XM_574680.1	XM_574680.1		294014	62642431	XM_574680.1	Cnnm2_predicted	XP_574680.1	ILMN_1375530	0004200452	S	3371	TGTCGGCAGAAGCTGCAGGTGCCCTCTCTGCACGTAGCGTCCTTTTGAAC				1q54	PREDICTED: Rattus norvegicus cyclin M2 (predicted) (Cnnm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341573-S	ILMN_264078	PPARGC1B	NM_176075.2	NM_176075.2		291567	31341573	NM_176075.2	Ppargc1b	NP_788264.1	ILMN_1370999	0005130541	S	2766	CCTGTCCGTGAGGAACGGCGCTACCCTGAGAAAACGCAATGAGCCCTCCT	18	-	57278905-57278954	18q12.1	Rattus norvegicus peroxisome proliferator-activated receptor gamma, coactivator 1 beta (Ppargc1b), mRNA.	A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence ISS]; A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence ISS]; Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence ISS]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence IEA]; Interacting selectively with an estrogen receptor [goid 30331] [evidence ISS]; Interacting selectively with an estrogen receptor [goid 30331] [evidence IEA];  [goid 30374] [evidence ISS];  [goid 30374] [evidence IEA]; The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased [goid 30546] [evidence ISS]; The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased [goid 30546] [evidence IEA]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence ISS]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence IEA]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence IEA]; Interacting selectively with an estrogen receptor [goid 30331] [evidence IEA];  [goid 30374] [evidence IEA]; The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased [goid 30546] [evidence IEA]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence IEA]; Interacting selectively with an estrogen receptor [goid 30331] [evidence IEA];  [goid 30374] [evidence ISS]; The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased [goid 30546] [evidence IEA]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence ISS]	Perc; PGC1beta	Perc; PGC1beta
Rattus norvegicus	RefSeq	GI_56605829-S	ILMN_281337	RGD1307315	NM_001008377.1	NM_001008377.1		362793	56605829	NM_001008377.1	RGD1307315	NP_001008378.1	ILMN_1367585	0000670154	S	1570	TGGATGAGCTTCCTTGGTCACCTGCTGAAACGGGTTCTACTCCAGGGGCA	6	+	137816064-137816113	6q32	Rattus norvegicus LOC362793 (RGD1307315), mRNA.				MGC105548	MGC105548
Rattus norvegicus	RefSeq	GI_62653109-S	ILMN_262997	TENC1_PREDICTED	XM_001066264.1	XM_001066264.1		315326	109482954	XM_001066264.1	Tenc1_predicted	XP_001066264.1	ILMN_1353929	0004730273	S	4520	ACGTGAGCGGATGGCAGAGACAGGTGTGAGGGGTGAGGAGGCATCAGTAA				7q36	PREDICTED: Rattus norvegicus tensin like C1 domain containing phosphatase (predicted), transcript variant 3 (Tenc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655061-S	ILMN_277680	RGD1307304_PREDICTED	XM_001066941.1	XM_001066941.1		363231	109487175	XM_001066941.1	RGD1307304_predicted	XP_001066941.1	ILMN_1368267	0005340035	S	27	TCGTAGGAGCGCCCTTGATAAACCCACTGCCTTCTGCGGGCAGAGCGCTA				9q31	PREDICTED: Rattus norvegicus similar to 3222401M22Rik protein (predicted) (RGD1307304_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426806-S	ILMN_297597	LOC685645	XM_001064652.1	XM_001064652.1		685645	109507702	XM_001064652.1	LOC685645	XP_001064652.1	ILMN_1351795	0000130288	S	1739	CTGGGCCAGGAGTGTGAGGTTGAAAGCAAATGGGGTAATTCTGAGGTTAC	19	+	222520-222569	19p14	PREDICTED: Rattus norvegicus similar to carboxylesterase isoenzyme gene (LOC685645), mRNA.					
Rattus norvegicus	RefSeq	GI_34852531-S	ILMN_269957	LOC361841	XR_007416.1	XR_007416.1		361841	109510090	XR_007416.1	LOC361841		ILMN_1364814	0003390047	S	249	GCTTGTCATCAACAGGAAATCCATCACCATCTTCCAGGAGCGAGATCCCG				20q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC361841), mRNA.					
Rattus norvegicus	RefSeq	GI_62645341-S	ILMN_54084	RGD1562526_PREDICTED	XM_575160.2	XM_575160.2		499821	109468379	XM_575160.2	RGD1562526_predicted	XP_575160.1	ILMN_1365584	0004590494	S	2355	GCATCAGCCCAAGATCCTTTACCTGGAAGACTTAGACCTGAGCAGCAGCG	3	+	67089031-67089080	3q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D430039N05 gene (predicted) (RGD1562526_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653123-S	ILMN_264919	PFDN5_PREDICTED	XM_001067687.1	XM_001067687.1		300257	109482977	XM_001067687.1	Pfdn5_predicted	XP_001067687.1	ILMN_1372581	0006450358	S	440	GCCGTCGTGGAAATGATGAGCCAGAAGATTCAGCAGCTCACAGCCCTGGG				7q36	PREDICTED: Rattus norvegicus prefoldin 5 (predicted) (Pfdn5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654247-S	ILMN_70297	DOCK3_PREDICTED	XM_236616.4	XM_236616.4		315992	109483862	XM_236616.4	Dock3_predicted	XP_236616.3	ILMN_1358448	0000520102	S	6353	CCTAGAGCACGATGAAGGTGTGCTACTGCGGGAGGAGGCTGAGAGGCCAA	8	-	112116773-112116822	8q32	PREDICTED: Rattus norvegicus dedicator of cyto-kinesis 3 (predicted) (Dock3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656535-S	ILMN_54735	RGD1564623_PREDICTED	XM_573140.2	XM_573140.2		497954	109488537	XM_573140.2	RGD1564623_predicted	XP_573140.1	ILMN_1353508	0000460725	S	823	ACAGAGCCTGTGAGAAGACAGTGGTGGGCAAGTAGGGGCTGTCACCCTGT	10	-	62485142-62485191	10q24	PREDICTED: Rattus norvegicus similar to candidate tumor suppressor OVCA2 (predicted) (RGD1564623_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656056-S	ILMN_69089	FSTL4_PREDICTED	XM_220408.3	XM_220408.3		303130	62656056	XM_220408.3	Fstl4_predicted	XP_220408.3	ILMN_1356182	0007050170	S	6446	AAAATCGTCTCTGTGCCCGGCTGCACACCACGTTGCCTGGGGACACTACA				10q22	PREDICTED: Rattus norvegicus follistatin-like 4 (predicted) (Fstl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394226-S	ILMN_270185	PTPRO	NM_017336.1	NM_017336.1		50677	8394226	NM_017336.1	Ptpro	NP_059032.1	ILMN_1349137	0005340148	S	4691	CACTGGACACCGTCCCTTAAGAATACCGTTGAGCGTCTCCGTGGATTCCG				4q44	Rattus norvegicus protein tyrosine phosphatase, receptor type, O (Ptpro), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]	GLEPP1; RPTP-BK	GLEPP1; RPTP-BK
Rattus norvegicus	RefSeq	GI_56119140-S	ILMN_277102	BTK	NM_001007798.1	NM_001007798.1		367901	56119140	NM_001007798.1	Btk	NP_001007799.1	ILMN_1354795	0001410360	S	1648	GATGAATACACCAGCTCGGTAGGCTCCAAATTTCCAGTCCGGTGGTCTCC	X	-	122002375-122002424	Xq34	Rattus norvegicus Bruton agammaglobulinemia tyrosine kinase (Btk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IMP]; The regulated release of histamine by a mast cell or group of mast cells [goid 2553] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism [goid 9607] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654939-S	ILMN_63836	REV1L_PREDICTED	XM_237071.4	XM_237071.4		316344	109485979	XM_237071.4	Rev1l_predicted	XP_237071.4	ILMN_1350640	0006840092	S	3904	AGCCAGAGCAGCTGTTTTAGACCGGCAGCACCCAACCTAGCTGGAGCTGT	9	-	36995277-36995326	9q21	PREDICTED: Rattus norvegicus REV1-like (S. cerevisiae) (predicted) (Rev1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27682898-S	ILMN_63836	REV1L_PREDICTED	XM_237071.4	XM_237071.4		316344	109485979	XM_237071.4	Rev1l_predicted	XP_237071.4	ILMN_2039717	0000670360	S	4104	GAAAAGGTTGATGCAGCAGTCAGTGGAGTCAGTATGGAACATGGCGTTCG	9	-	36994628-36994672:36994946-36994950	9q21	PREDICTED: Rattus norvegicus REV1-like (S. cerevisiae) (predicted) (Rev1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648388-S	ILMN_66223	RGD1561712_PREDICTED	XM_578392.2	XM_578392.2		502891	109472616	XM_578392.2	RGD1561712_predicted	XP_578392.2	ILMN_1358537	0001050180	S	2126	GCTGTGGTTCCATCATTCAAGTGTGCATCTGCGCCGTCTGGCTGGGAACG	4	-	160131648-160131697	4q42	PREDICTED: Rattus norvegicus similar to putative pheromone receptor V2R1b (predicted) (RGD1561712_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657112-S	ILMN_66246	LOC501722	XM_580227.1	XM_580227.1		501722	62657112	XM_580227.1	LOC501722	XP_580227.1	ILMN_1373910	0006220097	S	299	TGTTGCATTTCTAGTTGCTGCCGCCCCAGCTGCTGCAGACCTCAGTGCTG					PREDICTED: Rattus norvegicus LOC501722 (LOC501722), mRNA.					
Rattus norvegicus	RefSeq	GI_62658500-I	ILMN_281459	RADIL	NM_001037218.1	NM_001037218.1		304299	82617620	NM_001037218.1	Radil	NP_001032295.1	ILMN_1375518	0004210538	S	3244	AGCAGCCTGATGGGTGTCAGCTACATGAGGGCAGTGGATCTCATCCGACA	12	+	12485055-12485083:12485237-12485257	12p11	Rattus norvegicus Rap GTPase interactor (Radil), mRNA.					
Rattus norvegicus	RefSeq	GI_62663394-S	ILMN_295211	RGD1561940_PREDICTED	XR_007829.1	XR_007829.1		364686	109505621	XR_007829.1	RGD1561940_predicted		ILMN_1352843	0006220594	S	1773	AGAAACCCACAATCTGCCAAAGCAACCTCCACTGGCCCTAGCAATGGGAC				17p12	PREDICTED: Rattus norvegicus similar to KB07 protein (predicted) (RGD1561940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090392-S	ILMN_290731	DCAKD	NM_001007724.1	NM_001007724.1		360639	56090392	NM_001007724.1	Dcakd	NP_001007725.1	ILMN_1367325	0006130373	S	1569	ACCCCCGGTAGAGGAATCTGTAAGCTGTTGGGTTCTCCCCGACTGTACGC	10	-	92165645-92165694	10q32.1	Rattus norvegicus dephospho-CoA kinase domain containing (Dcakd), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94233	MGC94233
Rattus norvegicus	RefSeq	GI_62658249-S	ILMN_262623	SPAG6	NM_001034960.1	NM_001034960.1		360747	77993362	NM_001034960.1	Spag6	NP_001030132.1	ILMN_1365944	0005690059	S	1528	TGAGACACTTCTGCAGAGGGTGGACAGCTACCAGCCACAGTGAACAAAGC	11	+	86320659-86320708	11q23	Rattus norvegicus sperm associated antigen 6 (Spag6), mRNA.		The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Spag6	Spag6
Rattus norvegicus	RefSeq	GI_61557145-S	ILMN_263922	BMYC	NM_001013163.2	NM_001013163.2		311807	83035030	NM_001013163.2	Bmyc	NP_001013181.2	ILMN_1366871	0006450309	S	427	GAAGCGGTCGCCGCGTCTTTCTCCCCCAGGGATCACGACGGTGATAGCTT	3	+	3865166-3865215	3p13	Rattus norvegicus brain expressed myelocytomatosis oncogene (Bmyc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	B-myc; Mycb; Bmyc	B-myc; Mycb; Bmyc
Rattus norvegicus	RefSeq	GI_47576464-S	ILMN_268165	OLR159	NM_001000170.1	NM_001000170.1		293305	47576464	NM_001000170.1	Olr159	NP_001000170.1	ILMN_1369223	0004570673	S	648	CACGGTCTCCTACACCATGATCCTGAGGGCAGTGGTCAGCTTATCCTCAG	1	+	162295628-162295677	1q33	Rattus norvegicus olfactory receptor 159 (Olr159), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr159; ratchr1-162391800-162392765_ORF	Olr159; ratchr1-162391800-162392765_ORF
Rattus norvegicus	RefSeq	GI_62667138-S	ILMN_279534	RGD1563666_PREDICTED	XM_001054861.1	XM_001054861.1		317617	109512181	XM_001054861.1	RGD1563666_predicted	XP_001054861.1	ILMN_1356824	0004920528	S	895	GCAATGGAGACTGGAGATGCAGAGGATGAATATGCCAGAGAGGAAGAGCT				Xq31	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 43 (predicted), transcript variant 1 (RGD1563666_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646489-S	ILMN_65319	LOC502698	XM_578197.1	XM_578197.1		502698	62646489	XM_578197.1	LOC502698	XP_578197.1	ILMN_1363668	0006900672	S	830	AGGACTCCACTCAGCACATCTGGTAGCAGGAGGACTCCACTCAGCACAGG					PREDICTED: Rattus norvegicus similar to VCX-C protein (Variably charged protein X-C) (LOC502698), mRNA.					
Rattus norvegicus	RefSeq	GI_62651765-S	ILMN_270055	RGD1311136	XM_001076923.1	XM_001076923.1		299608	109481609	XM_001076923.1	RGD1311136	XP_001076923.1	ILMN_1371360	0006550180	S	1732	AAGAGAGCTGTGGTCTACAGGGAGAGGGGCTGGCGGCAAAGGTTCTGGAA				7q11	PREDICTED: Rattus norvegicus membralin (RGD1311136), mRNA.					
Rattus norvegicus	RefSeq	GI_60223058-S	ILMN_273491	RNASE10	NM_001012467.1	NM_001012467.1		305840	60223058	NM_001012467.1	Rnase10	NP_001012485.1	ILMN_1351448	0002650707	S	254	GTGAAGATGAAGTGGGGGGAAGCAGGATGCTGAGAGCCAAGACCCTCCTT	15	+	26987889-26987938	15p14	Rattus norvegicus ribonuclease, RNase A family, 10 (non-active) (Rnase10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]	Rnase10; RGD1310415	Rnase10; RGD1310415
Rattus norvegicus	RefSeq	GI_62644909-S	ILMN_275343	RGD1305178	NM_001025003.1	NM_001025003.1		311855	68163440	NM_001025003.1	RGD1305178	NP_001020174.1	ILMN_1358530	0004560324	S	1302	GAAGTTCAAGAAGATGAACAGGCGCTACTAAGGCAGCGGTAGGGGCTGGA	3	-	10040076-10040125	3p12	Rattus norvegicus similar to Hypothetical protein MGC11690 (RGD1305178), mRNA.				MGC108846	MGC108846
Rattus norvegicus	RefSeq	GI_27696945-S	ILMN_270011	RGD1562808_PREDICTED	XM_001076696.1	XM_001076696.1		295464	109467627	XM_001076696.1	RGD1562808_predicted	XP_001076696.1	ILMN_1366920	0002760538	S	239	CGTACCGCATCAGCTACTCGTGGCAGAAAGAGGACAGATTCCTTGGAAAC				2q42	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1562808_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647237-S	ILMN_57296	MPP6_PREDICTED	XM_342682.3	XM_342682.3		362359	109472036	XM_342682.3	Mpp6_predicted	XP_342683.3	ILMN_1374461	0000780128	S	869	CTAGCCATGTGAAAGAGGGAGGAAGTGCTGGTCTGATTCCAAGCCAGTTC	4	+	78405726-78405775	4q24	PREDICTED: Rattus norvegicus membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) (predicted) (Mpp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652157-S	ILMN_55003	NDUFA12_PREDICTED	XM_216880.4	XM_216880.4		299739	109480481	XM_216880.4	Ndufa12_predicted	XP_216880.4	ILMN_1356229	0001230736	S	346	TGGCACCGCTGGCTTCACTGCATGACTGACGACCCTCCAACAACAAAACC	7	+	31352640-31352641:31375881-31375928	7q13	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 (predicted) (Ndufa12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20806150-S	ILMN_277345	RNH1	NM_139105.1	NM_139105.1		245964	20806150	NM_139105.1	Rnh1	NP_620805.1	ILMN_1352636	0006130750	S	1401	TCCTGTATGACATTTACTGGACGGATGAGGTGGAAGACCAGCTTCGGGCC	1	-	201358841-201358890	1q41	Rattus norvegicus ribonuclease/angiogenin inhibitor 1 (Rnh1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A stable heterodimer of angiogenin and placental ribonuclease inhibitor; interaction between angiogenin and PRI prevents angiogenin binding to its receptor to stimulate angiogenesis [goid 32311] [evidence IEA]; A stable heterodimer of angiogenin and placental ribonuclease inhibitor; interaction between angiogenin and PRI prevents angiogenin binding to its receptor to stimulate angiogenesis [goid 32311] [evidence ISS]	Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence IEA]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of a ribonuclease, any enzyme that catalyzes the hydrolysis of phosphodiester bonds in chains of RNA [goid 8428] [evidence IEA]; Stops, prevents or reduces the activity of a ribonuclease, any enzyme that catalyzes the hydrolysis of phosphodiester bonds in chains of RNA [goid 8428] [evidence ISS]	Rnh	Rnh
Rattus norvegicus	RefSeq	GI_18677742-S	ILMN_275851	FGF11	NM_130816.1	NM_130816.1		170632	18677742	NM_130816.1	Fgf11	NP_570829.1	ILMN_1356803	0003130100	S	520	GGCCTGGACAAGGAAGGCCGGGTCATGAAGGGAAACCGAGTCAAGAAGAC	10	-	56620016-56620065	10q24	Rattus norvegicus fibroblast growth factor 11 (Fgf11), mRNA.			The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649690-S	ILMN_65240	LOC362604	XM_342922.2	XM_342922.2		362604	62649690	XM_342922.2	LOC362604	XP_342923.2	ILMN_1367324	0003360348	S	3972	GGCCGAGGTCCGTGGCTCTGCTCCTGGACTCCTTTATAGACTGGCAGAAA				5q36	PREDICTED: Rattus norvegicus similar to toll-like receptor 12 (LOC362604), mRNA.					
Rattus norvegicus	RefSeq	GI_62645753-S	ILMN_51147	LOC311323	XM_230530.3	XM_230530.3		311323	62645753	XM_230530.3	LOC311323	XP_230530.3	ILMN_1351110	0002190014	S	1261	ACGAGGACTGGCTGGAGAAGCAGCAGGCCCCAGGGCAGGAGTGTGTTGAT				3q35	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC311323), mRNA.					
Rattus norvegicus	RefSeq	GI_62659892-S	ILMN_285201	RGD1307161	NM_001025669.1	NM_001025669.1		305031	71043831	NM_001025669.1	RGD1307161	NP_001020840.1	ILMN_1370992	0000540176	S	1094	GCCCCACAACTGGAACTGAAAGCGAACTATGGCCTGGTAGAGCCTGTGCC	13	-	99322532-99322581	13q26	Rattus norvegicus similar to 0610010K06Rik protein (RGD1307161), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]			MGC114362	MGC114362
Rattus norvegicus	RefSeq	GI_34872999-S	ILMN_66695	LOC298675	XM_216607.2	XM_216607.2		298675	34872999	XM_216607.2	LOC298675	XP_216607.2	ILMN_1368744	0004810746	S	1416	CGGAAACAGAACGGGCCAGAGCGTACCAAGTCTGGGGTTTATCGCATGGC				5q36	PREDICTED: Rattus norvegicus similar to RER1 homolog (predicted) (LOC298675), mRNA.					
Rattus norvegicus	RefSeq	GI_62640428	ILMN_288537	RGD1559470_PREDICTED	XM_001056143.1	XM_001056143.1		499172	109462066	XM_001056143.1	RGD1559470_predicted	XP_001056143.1	ILMN_1650906	0004850008	S	1866	GTTTCTCTCCTGCTCTTAGTGAGCTGTGGTGGCTTCAGGGGTATAGCACC					PREDICTED: Rattus norvegicus similar to mKIAA0574 protein (predicted) (RGD1559470_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651228-S	ILMN_272037	CYP46A1_PREDICTED	XM_001069311.1	XM_001069311.1		362782	109479956	XM_001069311.1	Cyp46a1_predicted	XP_001069311.1	ILMN_1373918	0000840300	S	1282	CTGGAAGAGGAGACCTTGATTGATGGGGTCAGAGTCCCTGGCAACACTCC				6q32	PREDICTED: Rattus norvegicus cytochrome P450, family 46, subfamily a, polypeptide 1 (predicted) (Cyp46a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981511-S	ILMN_292706	SCN4A	NM_013178.1	NM_013178.1		25722	6981511	NM_013178.1	Scn4a	NP_037310.1	ILMN_1370344	0006980093	S	6825	CACGGGAGATGAGTTGATACTGGGGCATGCAGTGAGAAGGCTCACCAGGC	10	-	95710794-95710843	10q32.1	Rattus norvegicus sodium channel, voltage-gated, type 4, alpha subunit (Scn4a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence TAS]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]	NCHVS; Nav1.4; microI	NCHVS; Nav1.4; microI
Rattus norvegicus	RefSeq	GI_62657836-S	ILMN_57050	LOC498072	XM_573272.1	XM_573272.1		498072	62657836	XM_573272.1	LOC498072	XP_573272.1	ILMN_1351907	0000610685	S	1	GGAGAAGCCAGTTCTCGCCGGAGCTTGGGGAAGGAAGTCTCTCTGTGGAG				11q12	PREDICTED: Rattus norvegicus similar to High mobility group protein 2 (HMG-2) (LOC498072), mRNA.					
Rattus norvegicus	RefSeq	GI_62661691-S	ILMN_56150	RGD1309922_PREDICTED	XM_224329.4	XM_224329.4		306007	109501856	XM_224329.4	RGD1309922_predicted	XP_224329.4	ILMN_1349281	0000050048	S	3427	AGGTGATAGAGCCCATTCTGGGAAGCACTTGGTGTTGGGTCAAGGTCGCC	15	-	50539661-50539710	15p11	PREDICTED: Rattus norvegicus similar to 2610301G19Rik protein (predicted) (RGD1309922_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649215-S	ILMN_63460	LOC497805	XM_579513.1	XM_579513.1		497805	62649215	XM_579513.1	LOC497805	XP_579513.1	ILMN_1365354	0002810400	S	479	ACGCCCAGGTGAGCATGGCTTCCAAACCAACCCCCAAAGCAGCGCTAAGT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031550 (LOC497805), mRNA.					
Rattus norvegicus	RefSeq	GI_62655165-S	ILMN_69953	LOC501156	XM_576580.1	XM_576580.1		501156	62655165	XM_576580.1	LOC501156	XP_576580.1	ILMN_1366627	0000580706	S	266	CCCCAGAGAGCCCTTGGGCAGCACCCCACGAGCAAACTTGAGCCTCGGGA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501156), mRNA.					
Rattus norvegicus	RefSeq	GI_13242290-S	ILMN_280416	HHEX	NM_024385.1	NM_024385.1		79237	13242290	NM_024385.1	Hhex	NP_077361.1	ILMN_1353851	0003610014	S	1369	GCCTCTGACCCTGGTATTAAGGGATGACGCAGTCTCTACAGGCAGGGAAA	1	+	241741896-241741945	1q53	Rattus norvegicus hematopoietically expressed homeobox (Hhex), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence ISS]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IEA]; Any process that decreases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10553] [evidence ISS]; Any process that decreases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10553] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence TAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30177] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence IEA]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30948] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30948] [evidence IEA]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence IEA]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation [goid 8190] [evidence ISS]; Interacting selectively with eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation [goid 8190] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any activity that stops or downregulates transcription of genes globally, and is not specific to a particular gene or gene set [goid 16565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Hex	Hex
Rattus norvegicus	RefSeq	GI_62653839-S	ILMN_273793	RGD1311830_PREDICTED	XM_001075916.1	XM_001075916.1		363083	109484872	XM_001075916.1	RGD1311830_predicted	XP_001075916.1	ILMN_1348783	0003390215	S	727	CGGGGAGACAAAGCGCACCTCATCCCACGGGTTTCTATTGAGAATGTGCG				8q24	PREDICTED: Rattus norvegicus similar to F-box protein FBL2 (predicted) (RGD1311830_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642510-S	ILMN_67923	LOC499378	XM_574695.1	XM_574695.1		499378	62642510	XM_574695.1	LOC499378	XP_574695.1	ILMN_1368752	0000630168	S	2682	CCACAGCGTTCTGTACCTACGGACTAATGTACACACGGGATAGGATGGAC					PREDICTED: Rattus norvegicus similar to oocyte-testis gene 1 (LOC499378), mRNA.					
Rattus norvegicus	RefSeq	GI_47577454-S	ILMN_298436	OLR46	NM_001001001.1	NM_001001001.1		405365	47577454	NM_001001001.1	Olr46	NP_001001001.1	ILMN_1374277	0001090411	S	118	GCTCTGTTGGGCAACTGCACCCTTCTCTTCATTATCCAGGCAGACTCAGC	1	+	160247813-160247862	1q32	Rattus norvegicus olfactory receptor 46 (Olr46), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr46	Olr46
Rattus norvegicus	RefSeq	GI_62661505-S	ILMN_265744	RGD1562035_PREDICTED	XM_001057648.1	XM_001057648.1		290247	109502441	XM_001057648.1	RGD1562035_predicted	XP_001057648.1	ILMN_1374018	0006940021	S	367	CATGCCATGGATGTAGTTCCCCTGCCTAGTCCTTCTGACTTTATAGACCC				15p13	PREDICTED: Rattus norvegicus similar to mast cell protease 1-like 3 precursor (predicted) (RGD1562035_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658607-S	ILMN_265105	PERQ1_PREDICTED	XM_001069187.1	XM_001069187.1		304378	109497058	XM_001069187.1	Perq1_predicted	XP_001069187.1	ILMN_1354514	0005860040	S	3715	CCACACGATGCACCTTAACTCACCCACCACGAGGCACTTTACAGATGGGG				12q12	PREDICTED: Rattus norvegicus PERQ amino acid rich, with GYF domain 1 (predicted) (Perq1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638985-S	ILMN_282438	RGD1562311_PREDICTED	XR_008266.1	XR_008266.1		365169	109461033	XR_008266.1	RGD1562311_predicted		ILMN_1366128	0006370358	S	1775	ATGCTGTGACCTCCACCCACTCAGGCACTTACAAATGCTATGGTTCTCGA				1q12	PREDICTED: Rattus norvegicus similar to PIRA5 (predicted) (RGD1562311_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652756-S	ILMN_274448	CBL27	XM_001077084.1	XM_001077084.1		192178	109482599	XM_001077084.1	Cbl27	XP_001077084.1	ILMN_1361796	0004070273	S	5527	CCAGAACCAAGCAGACCCCGTTGGACCTGCGCTGAACCTTTTCGGTGGGT				7q34	PREDICTED: Rattus norvegicus androgen receptor-related apoptosis-associated protein CBL27 (Cbl27), mRNA.					
Rattus norvegicus	RefSeq	GI_62644031	ILMN_273105	HIST2H3C2_PREDICTED	XM_001062251.1	XM_001062251.1		310678	109467222	XM_001062251.1	Hist2h3c2_predicted	XP_001062251.1	ILMN_1650290	0004120070	S	313	TTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCAT				2q34	PREDICTED: Rattus norvegicus histone 2, H3c2 (predicted) (Hist2h3c2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658169-S	ILMN_291077	RGD1560102_PREDICTED	XM_001060081.1	XM_001060081.1		363823	109494686	XM_001060081.1	RGD1560102_predicted	XP_001060081.1	ILMN_1357315	0006550519	S	440	GACTGGAGTGAAGCCCTCAAGATCCACAAAGGCAAGAGCAGCCAGAGTTG				11q23	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12748 (predicted) (RGD1560102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576898	ILMN_297483	OLR230	NM_001000205.1	NM_001000205.1		293374	47576898	NM_001000205.1	Olr230	NP_001000205.1	ILMN_1649820	0004850039	S	905	TCAGCAGGACCTTTCACAAGGCCCTGGCCCTCAGAAAATTGATCCTGTAG	1	+	164380751-164380800	1q33	Rattus norvegicus olfactory receptor 230 (Olr230), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr230	Olr230
Rattus norvegicus	RefSeq	GI_27476058-S	ILMN_292341	ALDOB	NM_012496.1	NM_012496.1		24190	27476058	NM_012496.1	Aldob	NP_036628.1	ILMN_1353635	0005690280	S	1302	TGCGGAGTATGAGCACGTCACCCAGTAGTCTCCGAACACCTCCAGTTCCC	5	-	66283356-66283405	5q22	Rattus norvegicus aldolase B (Aldob), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; cetriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome [goid 34451] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IPI]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus [goid 9743] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate [goid 4332] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	Aldo2; LIV10	Aldo2; LIV10
Rattus norvegicus	RefSeq	GI_62666298-S	ILMN_67710	LOC502478	XM_577958.1	XM_577958.1		502478	62666298	XM_577958.1	LOC502478	XP_577958.1	ILMN_1362975	0006940619	S	813	CTGCAGTGCTCCCATTACCACCGGCTCCTACAGCAACTCATTGAAGGAAC					PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase (cyclophilin)-like 6 (LOC502478), mRNA.					
Rattus norvegicus	RefSeq	GI_62647901-S	ILMN_265969	SETMAR	XM_001071895.1	XM_001071895.1		500281	109472449	XM_001071895.1	Setmar	XP_001071895.1	ILMN_1349152	0006380086	S	1393	CTGGCACTGGAGAAAATCCTGCTAGTCCTGAGCTGATGCCTCTGCACTTG	4	+	143575852-143575901	4q41	PREDICTED: Rattus norvegicus SET domain and mariner transposase fusion gene (Setmar), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives [goid 18024] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758237-S	ILMN_263157	SPA17	NM_053482.1	NM_053482.1		85244	16758237	NM_053482.1	Spa17	NP_445934.1	ILMN_1349717	0004730162	S	151	GAGAAAACCAGCTTTGATCCAGCAGAATGGGGGGCTAAGGTAGAGGACCG	8	-	38847118-38847164:38851927-38851929	8q21	Rattus norvegicus sperm autoantigenic protein 17 (Spa17), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]	Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]	Sp17	Sp17
Rattus norvegicus	RefSeq	GI_62657027-S	ILMN_285515	SMARCE1	NM_001024993.1	NM_001024993.1		303518	68163422	NM_001024993.1	Smarce1	NP_001020164.1	ILMN_1355392	0001170273	S	835	GTGGACATGGAGAAGATTGCAGCAGAGATCGCACAGGCGGAGGAGCAGGC	10	-	88110639-88110688	10q32.1	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_10120485-S	ILMN_266601	GSTM3	NM_020540.1	NM_020540.1		57298	10120485	NM_020540.1	Gstm3	NP_065415.1	ILMN_1374835	0005720075	S	599	GTAGCAGCTTTCTCCCAAGACCTGTGTTTACTAAGATACCGCAGTGGGGC	2	-	203532371-203532420	2q34	Rattus norvegicus glutathione S-transferase, mu 3 (Gstm3), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	GstYb4	GstYb4
Rattus norvegicus	RefSeq	GI_62643357-S	ILMN_66855	RGD1561608_PREDICTED	XM_345202.3	XM_345202.3		365770	109464769	XM_345202.3	RGD1561608_predicted	XP_345203.3	ILMN_1361929	0004610286	S	1735	CAGCTATCATGTGCAACACTGCCACTTACCCATCAGCAGTGGAAGCTAGC	2	+	123868512-123868561	2q25	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561608_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656209-I	ILMN_54293	AKAP10_PREDICTED	XM_573108.1	XM_573108.1		360540	62656209	XM_573108.1	Akap10_predicted	XP_573108.1	ILMN_1375550	0002360242	S	3531	CTCCAGAACATGATCCCCTACTGGACATAGCCTTGTGTTTGGGTGTAGAC				10q23	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein 10 (predicted) (Akap10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718746	ILMN_57481	LOC503408	XM_578947.1	XM_578947.1		503408	62718746	XM_578947.1	LOC503408	XP_578947.1	ILMN_1649819	0006350452	S	206	AAGCTGCAACAAAATCCCGGCCCCAGACTAAAAGAACTGTTGGTGGAACG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503408), mRNA.					
Rattus norvegicus	RefSeq	GI_62643423-S	ILMN_69846	SLC7A11_PREDICTED	XM_227120.4	XM_227120.4		310392	109464730	XM_227120.4	Slc7a11_predicted	XP_227120.1	ILMN_1372202	0006380440	S	1509	ATTTCCTCAGTTTTGCCAGGTGGCTTTTTATGGGCCTGGCAGTCGCCGGG	2	-	139255709-139255758	2q26	PREDICTED: Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 (predicted) (Slc7a11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981009-S	ILMN_293542	HBA-A2	NM_013096.1	NM_013096.1		25632	6981009	NM_013096.1	Hba-a2	NP_037228.1	ILMN_1356639	0006650278	S	504	CCCTCCCTTGCACCTATACCTCTTGGTCTTTGAATAAAGCCTGAGTAGGA	10	-	15584362-15584411	10q12	Rattus norvegicus hemoglobin alpha, adult chain 2 (Hba-a2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IDA]; An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; The process aimed at the progression of an erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48821] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IMP]	Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence IDA]; Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IC ]; Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with an organic acid, any acidic compound containing carbon in covalent linkage [goid 43177] [evidence IPI]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	HBAM; Hba1	HBAM; Hba1
Rattus norvegicus	RefSeq	GI_62660986-S	ILMN_70233	LOC498437	XM_573689.1	XM_573689.1		498437	62660986	XM_573689.1	LOC498437	XP_573689.1	ILMN_1350575	0006220465	S	600	GTGAGTAAGAAACTTAATCTTATGGACCCCGCTCTAGTTGGTTGATAGCC					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC498437), mRNA.					
Rattus norvegicus	RefSeq	GI_62662881-S	ILMN_53003	LOC498658	XM_573939.1	XM_573939.1		498658	62662881	XM_573939.1	LOC498658	XP_573939.1	ILMN_1363189	0005670072	S	275	CTGCTGCCTAGAAACATGGCCCCCAAGGATGAAATAACCACGTGCTCTGG				16q12.5	PREDICTED: Rattus norvegicus similar to Defensin-related sequence cryptdin peptide precursor (Cryptdin-related protein 1C) (CRS1C) (LOC498658), mRNA.					
Rattus norvegicus	RefSeq	GI_6981633-S	ILMN_287079	TBXAS1	NM_012687.1	NM_012687.1		24886	6981633	NM_012687.1	Tbxas1	NP_036819.1	ILMN_1348927	0006760735	S	1579	CTGGGGCTGCTGGTGGTCAAGCTGACACTGCTCCAGGTCCTACACAAGTT	4	+	66676845-66676894	4q22	Rattus norvegicus thromboxane A synthase 1, platelet (Tbxas1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The regulation of the levels, transport, and metabolism of chloride ions within a cell or between a cell and its external environment [goid 30644] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,11-alpha-epoxy-15-hydroxythromba-5,13-dienoate [goid 4796] [evidence IEA]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,11-alpha-epoxy-15-hydroxythromba-5,13-dienoate [goid 4796] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652374-S	ILMN_66039	RGD1564335_PREDICTED	XM_576264.2	XM_576264.2		500865	109480731	XM_576264.2	RGD1564335_predicted	XP_576264.2	ILMN_1366260	0001940687	S	2712	GTGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTCTTATACTAATGGTTCAG	7	-	80551871-80551920	7q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730410E15 gene (predicted) (RGD1564335_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.22774	ILMN_297212	ASRGL1	NM_145089.2	NM_145089.2		246307	31377474	NM_145089.2	Asrgl1	NP_659557.1	ILMN_1530180	0006420176	S	426	AAATCCTGTTAAACTTGCACGGCTTGTTATGGAAAAGACTCCTCATTGCT	1	-	211795386-211795401:211796024-211796057	1q43	Rattus norvegicus asparaginase like 1 (Asrgl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-aspartate [goid 33345] [evidence IDA]	Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H2O = N-acetyl-beta-glucosaminylamine + L-aspartate [goid 3948] [evidence IDA]; Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3 [goid 4067] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Hiob2; Gliap	Hiob2; Gliap
Rattus norvegicus	RefSeq	GI_31377474-S	ILMN_297212	ASRGL1	NM_145089.2	NM_145089.2		246307	31377474	NM_145089.2	Asrgl1	NP_659557.1	ILMN_1366911	0006200059	S	2007	TGTCAGCACCCTGGGAACGGTATGTCTGCTGCGGTGTGTCTGCTCAGCTT	1	-	211787216-211787265	1q43	Rattus norvegicus asparaginase like 1 (Asrgl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-aspartate [goid 33345] [evidence IDA]	Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H2O = N-acetyl-beta-glucosaminylamine + L-aspartate [goid 3948] [evidence IDA]; Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3 [goid 4067] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Hiob2; Gliap	Hiob2; Gliap
Rattus norvegicus	RefSeq	GI_13162358-S	ILMN_279326	CYBA	NM_024160.1	NM_024160.1		79129	13162358	NM_024160.1	Cyba	NP_077074.1	ILMN_1366276	0001940170	S	624	CCTTCAGTGGCTCCTGCTTGAGTTTCCAAGGTGTTGCTCCCAGAGGGTGG				19q12	Rattus norvegicus cytochrome b-245, alpha polypeptide (Cyba), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IMP]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence TAS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The enlargement or overgrowth of all or part of an organ due to an increase in size of its smooth muscle cells without cell division. Physiological hypertrophy is a normal process during development, and can also occur in mature structures on demand. In the uterus, smooth muscle cells undergo hypertrophy during pregnancy [goid 14895] [evidence IMP]; The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions [goid 17004] [evidence ISS]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence IMP]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 45730] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence IMP]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence IMP]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	p22-phox	p22-phox
Rattus norvegicus	RefSeq	GI_62652335-S	ILMN_64189	RRM2B_PREDICTED	XM_235367.4	XM_235367.4		299976	109480709	XM_235367.4	Rrm2b_predicted	XP_235367.4	ILMN_1351564	0002940707	S	595	GCAGATTGGGCTCTGCGCTGGATAGCAGATAGGAAATCTACTTTTGGGGA	7	-	73441450-73441454:73442609-73442653	7q22	PREDICTED: Rattus norvegicus ribonucleotide reductase M2 B (TP53 inducible) (predicted) (Rrm2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638775-S	ILMN_280502	LIG1	NM_001024268.1	NM_001024268.1		81513	66730438	NM_001024268.1	Lig1	NP_001019439.1	ILMN_1355586	0001660273	S	2636	GGCTAGACCCGAGTGTTGTGTGGGAGGTGAAATGTGCTGATCTCTCCCTG	1	+	73765412-73765461	1q21	Rattus norvegicus ligase I, DNA, ATP-dependent (Lig1), transcript variant 1, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IDA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another; requires an energy source such as ATP or NAD+ [goid 3909] [evidence IDA]; Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m) [goid 3910] [evidence IEA]; Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m) [goid 3910] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC105416	MGC105416
Rattus norvegicus	RefSeq	GI_62657175-S	ILMN_70396	RGD1559753_PREDICTED	XM_220928.4	XM_220928.4		303556	109489141	XM_220928.4	RGD1559753_predicted	XP_220928.4	ILMN_1370363	0007000180	S	8517	AGGTTGCAGTCGTTCCACAACAAGCTGAGAGTCTGAGGAGAGCTTGGGCC	10	-	92638468-92638517	10q32.1	PREDICTED: Rattus norvegicus RGD1559753 (predicted) (RGD1559753_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647483-S	ILMN_68887	LOC502774	XM_578272.1	XM_578272.1		502774	62647483	XM_578272.1	LOC502774	XP_578272.1	ILMN_1354953	0004610504	S	2212	ATGTGCGGCGCGTGGGTAAATTCCATCAGGTAGGCAAGCAGTTGGGCCAC				4q24	PREDICTED: Rattus norvegicus similar to Probable serine carboxypeptidase CPVL precursor (Carboxypeptidase, vitellogenic-like) (Vitellogenic carboxypeptidase-like protein) (VCP-like protein) (LOC502774), mRNA.					
Rattus norvegicus	RefSeq	GI_47577646-S	ILMN_282648	OLR550	NM_001000322.1	NM_001000322.1		295795	47577646	NM_001000322.1	Olr550	NP_001000322.1	ILMN_1366553	0002100286	S	886	GATGTGAAAGAGGCAGCCAAGAGGTCAATTTGTAGGGAGAGTGGTGGCCC	3	-	70786337-70786386	3q24	Rattus norvegicus olfactory receptor 550 (Olr550), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr550	Olr550
Rattus norvegicus	RefSeq	GI_62641227-S	ILMN_269360	POLR3E_PREDICTED	XM_001075970.1	XM_001075970.1		361640	109462783	XM_001075970.1	Polr3e_predicted	XP_001075970.1	ILMN_1353846	0001940056	S	2903	GGTGCAAATGGAACCAGGTAAGTGTGGAACAGTGTGTAAGCGAGGTTATC				1q35	PREDICTED: Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide E (predicted) (Polr3e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660083-S	ILMN_280944	RGD1563600_PREDICTED	XR_007978.1	XR_007978.1		364093	109500240	XR_007978.1	RGD1563600_predicted		ILMN_1354151	0004280541	S	498	GTGATCCACAGAGCCAGTCGAGGAGTTGGTGATGCACGGCCCCAGGAATT				14p22	PREDICTED: Rattus norvegicus similar to ribosomal protein S11 (predicted) (RGD1563600_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978462-S	ILMN_296098	ADRB3	NM_013108.1	NM_013108.1		25645	6978462	NM_013108.1	Adrb3	NP_037240.1	ILMN_1371279	0006940736	S	1879	GTTCCCAGTCTCTGTGTCTCTGGTTAGTTGGAAAGCAGGAAACCCGGCGG	16	+	69166096-69166145	16q12.3	Rattus norvegicus adrenergic, beta-3-, receptor (Adrb3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]	The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence ISS]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence ISS]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 15052] [evidence ISS]; Interacting selectively with a beta-3 adrenergic receptor [goid 31699] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine [goid 51379] [evidence IDA]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence IDA]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence ISS]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence ISS]	ADRB	ADRB
Rattus norvegicus	RefSeq	GI_62647915-S	ILMN_66502	LOC502862	XM_578362.1	XM_578362.1		502862	62647915	XM_578362.1	LOC502862	XP_578362.1	ILMN_1369544	0006350167	S	447	TCAGATGTTCTCTTAGTCAACAGACCTCCGGAGCTGGGCGCCAACCTGCG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC502862), mRNA.					
Rattus norvegicus	RefSeq	GI_62661515-S	ILMN_266831	MCPT10	XM_001058119.1	XM_001058119.1		54269	109502454	XM_001058119.1	Mcpt10	XP_001058119.1	ILMN_1357228	0000780463	S	149	ACCCCATCACTGTGGCGGTTTCCTGGTGGCAAAAGACATCGTAATGACAG				15p12	PREDICTED: Rattus norvegicus mast cell protease 10 (Mcpt10), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12621119-S	ILMN_300282	SFXN3	NM_022948.1	NM_022948.1		65042	12621119	NM_022948.1	Sfxn3	NP_075237.1	ILMN_1353340	0005050242	S	2345	GCCTAAGACAGTGAGTTCTGGGATTAAAGGCATATACCACCATTGCCAGC	1	+	250121666-250121715	1q54	Rattus norvegicus sideroflexin 3 (Sfxn3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]	Catalysis of the transfer of tricarboxylate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5371] [evidence TAS]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]	TCC	TCC
Rattus norvegicus	RefSeq	GI_62657516-S	ILMN_70047	LOC363711	XM_343990.3	XM_343990.3		363711	109489535	XM_343990.3	LOC363711	XP_343991.3	ILMN_1360019	0003840750	S	2848	CAGCCTGTGAAAGAAGGTGCCTATGTTGAAGATGCAGACAGGATCGGTGC	10|NW_047348.1	+	313830-313879		PREDICTED: Rattus norvegicus similar to Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy chain 9) (LOC363711), mRNA.					
Rattus norvegicus	RefSeq	GI_22203760-S	ILMN_277502	GPX6	NM_147165.1	NM_147165.1		259233	22203760	NM_147165.1	Gpx6	NP_671694.1	ILMN_1359971	0001090280	S	1006	CACAGCACTGGTGGGTTAAAAGAAGTGGGAACGGGTGGCCAGATCCTCTG				17q11	Rattus norvegicus glutathione peroxidase 6 (Gpx6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Ry2d1; OBPII	Ry2d1; OBPII
Rattus norvegicus	RefSeq	GI_57113806	ILMN_268874	V1RD24	NM_001008937.1	NM_001008937.1		494284	57113806	NM_001008937.1	V1rd24	NP_001008937.1	ILMN_1649895	0005860347	S	640	CATCACCAGCAAGTGCAGCACATCCTCACTTTCCATCATGAACCCAGAGG	1	+	66984325-66984374	1q12	Rattus norvegicus vomeronasal 1 receptor, D24 (V1rd24), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58331130-S	ILMN_296602	GSTA2	NM_017013.4	NM_017013.4		24422	58331130	NM_017013.4	Gsta2	NP_058709.2	ILMN_1359893	0004210092	S	2	GTTGGGAGCTGAGTGGAGAAGAAGCCACGATTCTCGCTAGACAGTGAAGC	8	-	83310555-83310565:83312918-83312956	8q31	Rattus norvegicus glutathione S-transferase A2 (Gsta2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 42178] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IDA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_46195817-S	ILMN_295560	BDNF	NM_012513.2	NM_012513.2		24225	46195817	NM_012513.2	Bdnf	NP_036645.1	ILMN_1360447	0003390672	S	3387	CCCTCCGCAACTGTGTGGTCAGTGGCTGGCTCTCATACCCACTAAGATAC	3|NW_047673.1	+	283783-283832		Rattus norvegicus brain derived neurotrophic factor (Bdnf), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I [goid 6120] [evidence IMP]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which an axon recognizes and binds to a set of cells with which it may form stable connections [goid 7412] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; The process by which a neuronal cell in a multicellular organism interprets its surroundings [goid 8038] [evidence ISS]; The regulated release of glutamate by a cell or group of cells. The glutamate is the most abundant excitatory neurotransmitter in the nervous system [goid 14047] [evidence ISS]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; The response of an organism to a perceived external threat [goid 42596] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence IMP]; Any process that modulates the frequency, rate or extent of programmed cell death that occurs in the retina [goid 46668] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IDA]; A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity [goid 48172] [evidence IDA]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IMP]	Interacting selectively with the neurotrophin TRKB receptor [goid 5169] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	MGC105254	MGC105254
Rattus norvegicus	RefSeq	GI_62657189-S	ILMN_48297	LOC498010	XM_579769.1	XM_579769.1		498010	62657189	XM_579769.1	LOC498010	XP_579769.1	ILMN_1374615	0002190735	S	563	AAGCCAGCTTCCCTTGTCAGCCCATTCTCCACCCCCAGAAAAGAAGGGCA					PREDICTED: Rattus norvegicus LOC498010 (LOC498010), mRNA.					
Rattus norvegicus	RefSeq	GI_62655546-S	ILMN_278503	RGD1309701_PREDICTED	XM_001056810.1	XM_001056810.1		316729	109487663	XM_001056810.1	RGD1309701_predicted	XP_001056810.1	ILMN_1370964	0005550609	S	935	TGTCACACCTGGAGATTCTGTCCAATGAGAGCGAGAGCAAGGTTCAGTCA				9q38	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130005N14 (predicted) (RGD1309701_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036683-S	ILMN_298602	G6PC3	NM_176077.3	NM_176077.3		303565	51036683	NM_176077.3	G6pc3	NP_788266.2	ILMN_1357649	0006400403	S	1352	CTAAGCCTTTCCCCAGGTCCCCACAAAGCAAGAACAACGGGAGGCCTGGT	10	+	91264635-91264684	10q32.1	Rattus norvegicus glucose 6 phosphatase, catalytic, 3 (G6pc3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The directed movement of glucose-6-phosphate into, out of, within or between cells. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15760] [evidence ISS]; The directed movement of glucose-6-phosphate into, out of, within or between cells. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6 [goid 15760] [evidence IEA]	Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence ISS]; Catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate [goid 4346] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656895-S	ILMN_53669	RGD1560113_PREDICTED	XM_573184.2	XM_573184.2		497988	109488881	XM_573184.2	RGD1560113_predicted	XP_573184.1	ILMN_1363620	0000780670	S	1318	CGGGGTATGGGAAGGTCCCCAGGCTTGAGCCCAGAAAAACCTATCTACCC	10	+	85052537-85052586	10q31	PREDICTED: Rattus norvegicus similar to homeotic protein Hox B4 - mouse (predicted) (RGD1560113_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657353-S	ILMN_59384	LOC360661	XM_573224.1	XM_573224.1		360661	62657353	XM_573224.1	LOC360661	XP_573224.1	ILMN_1357687	0001740347	S	8514	CACCTGGGCCGCATCTATGTAAGGGGGAACACAGGGAAGGGTGTGGGCTA				10q32.3	PREDICTED: Rattus norvegicus similar to Lethal giant larvae homolog 2 (LOC360661), mRNA.					
Rattus norvegicus	RefSeq	GI_62662079-S	ILMN_60275	CLYBL_PREDICTED	XM_240311.3	XM_240311.3		306198	62662079	XM_240311.3	Clybl_predicted	XP_240311.3	ILMN_1356518	0004540670	S	2041	GCTATATCAGCTCGGAGAAAAGCCCAGCCGTTAGGAAATCCGAGGGCTCC				15q25	PREDICTED: Rattus norvegicus citrate lyase beta like (predicted) (Clybl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655965-S	ILMN_269580	LOC689330	XM_001070418.1	XM_001070418.1		689330	109487986	XM_001070418.1	LOC689330	XP_001070418.1	ILMN_1350229	0005670398	S	78	GTACCTCACAGGAAGGAGAGAACAGAGAACCACGGCTTCCTTACAGTACC	10	-	25718834-25718882:25719401-25719401	10q12	PREDICTED: Rattus norvegicus similar to methionine adenosyltransferase II, beta (LOC689330), mRNA.					
Rattus norvegicus	RefSeq	GI_62658564-S	ILMN_57323	LOC498158	XM_573371.1	XM_573371.1		498158	62658564	XM_573371.1	LOC498158	XP_573371.1	ILMN_1374145	0005910373	S	525	CCACTCCTACTGTGAATTTCTAGCTGTTTTGAAGCTGGCGTGTGGGGCCA				12q11	PREDICTED: Rattus norvegicus similar to Olfactory receptor 2AE1 (LOC498158), mRNA.					
Rattus norvegicus	RefSeq	GI_42476279-S	ILMN_289607	TMEM49	NM_138839.2	NM_138839.2		192129	42476279	NM_138839.2	Tmem49	NP_620194.1	ILMN_1349318	0006400037	S	1602	CACAGGGCCACATGGTCCAACTGGAGAACCTCGGCCACACAGAACCTTCT	10	-	74865446-74865495	10q26	Rattus norvegicus transmembrane protein 49 (Tmem49), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]			Vmp1	Vmp1
Rattus norvegicus	RefSeq	GI_62652933-S	ILMN_48554	RGD1562257_PREDICTED	XM_235563.4	XM_235563.4		300150	109481182	XM_235563.4	RGD1562257_predicted	XP_235563.4	ILMN_1367976	0006510059	S	2759	GTCTCAACCACCAGGTCACGGCTACCTTCACAGTTTCAGAGGGGACTGCC	7	+	127683329-127683378	7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein BC009980 (predicted) (RGD1562257_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649485-S	ILMN_54006	TMEM53_PREDICTED	XM_233431.4	XM_233431.4		313529	109475274	XM_233431.4	Tmem53_predicted	XP_233431.2	ILMN_1363440	0006980372	S	776	GCTGATAAGGTGGTCTCAGCCAGGGATGTGGAACGGATGGTGGAGGAACG	5	+	137575171-137575220	5q36	PREDICTED: Rattus norvegicus transmembrane protein 53 (predicted) (Tmem53_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978660-S	ILMN_300752	CKM	NM_012530.1	NM_012530.1		24265	6978660	NM_012530.1	Ckm	NP_036662.1	ILMN_1350890	0007000167	S	1158	GGAGAAGAAGCTGGAAAAAGGCCAGTCCATCGACGACATGATCCCTGCGC	1	+	78772429-78772478	1q21	Rattus norvegicus creatine kinase, muscle (Ckm), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6600] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase [goid 46314] [evidence TAS]; The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase [goid 46314] [evidence IDA]; The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase [goid 46314] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase [goid 46314] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence TAS]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence IDA]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence ISS]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Ckmm	Ckmm
Rattus norvegicus	RefSeq	GI_56606107-S	ILMN_301120	NDUFS7	NM_001008525.1	NM_001008525.1		362837	56606107	NM_001008525.1	Ndufs7	NP_001008525.1	ILMN_1351709	0001780746	S	390	CTGGCACGCTCACTAACAAGATGGCTCCAGCACTCCGCAAGGTGTACGAC	7	-	10965630-10965639:10965710-10965749	7q11	Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 7 (Ndufs7), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone [goid 5747] [evidence IEA]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone [goid 5747] [evidence ISS]	The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I [goid 6120] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The aggregation, arrangement and bonding together of a set of components to form mitochondrial respiratory chain complex I [goid 32981] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form mitochondrial respiratory chain complex I [goid 32981] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor [goid 3954] [evidence IEA]; Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor [goid 3954] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]	MGC105684	MGC105684
Rattus norvegicus	RefSeq	GI_62642696-S	ILMN_56741	LOC499496	XM_579970.1	XM_579970.1		499496	62642696	XM_579970.1	LOC499496	XP_579970.1	ILMN_1349433	0006380450	S	4541	GCTGAACATGTGCCAAAGTTTTACGGCTGTAGTGACTGTCGAGAAGACCC					PREDICTED: Rattus norvegicus LOC499496 (LOC499496), mRNA.					
Rattus norvegicus	RefSeq	GI_31377501-S	ILMN_291235	BAALC	NM_144762.2	NM_144762.2		140720	31377501	NM_144762.2	Baalc	NP_658907.1	ILMN_1366187	0006510706	S	2053	CCAGCTACAGTAACAGACACAGAGGGGGTTGGAGTCTGGCAGTCACGACC	7	+	74499246-74499295	7q22	Rattus norvegicus brain and acute leukemia, cytoplasmic (Baalc), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62659008-A	ILMN_276657	ANKRD13A	NM_001012148.1	NM_001012148.1		360823	58865867	NM_001012148.1	Ankrd13a	NP_001012148.1	ILMN_1376611	0001050019	S	1648	AATGGAGGGGTCAGCCACGCCCACAGTTATGAAGCCCAGTATGAGAGGGC	12	-	43088069-43088072:43088694-43088739	12q16	Rattus norvegicus ankyrin repeat domain 13a (Ankrd13a), mRNA.					
Rattus norvegicus	RefSeq	GI_34851528-S	ILMN_273325	LOC687248	XR_009164.1	XR_009164.1		687248	109484383	XR_009164.1	LOC687248		ILMN_1359331	0003060373	S	78	AACATCACCCGAGAGTGGGGATGACGAGGTGTCGGGCTCAAGTCCGGTGT					PREDICTED: Rattus norvegicus hypothetical protein LOC687248 (LOC687248), mRNA.					
Rattus norvegicus	RefSeq	GI_61889090-S	ILMN_70092	ARF6	NM_024152.2	NM_024152.2		79121	61889090	NM_024152.2	Arf6	NP_077066.1	ILMN_1359124	0004200092	S	686	GCCCTCCACCCAGCCCCCGGAAGGAGAGAAATCAAAAACCCATTCATAGG	6	+	91338181-91338230	6q24	Rattus norvegicus ADP-ribosylation factor 6 (Arf6), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IDA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell [goid 31529] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell [goid 31529] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rac protein signal transduction [goid 35020] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rac protein signal transduction [goid 35020] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652701-S	ILMN_59809	LOC500904	XM_576306.2	XM_576306.2		500904	109480964	XM_576306.2	LOC500904	XP_576306.2	ILMN_1354808	0005270075	S	452	CCTGCAGCCTGCCCACACTGCCAGCCAAAGTCTACATGGGTGTCAAACAA	7	+	116173648-116173671:116177161-116177186	7q34	PREDICTED: Rattus norvegicus similar to neutrophil cytosolic factor 4 (LOC500904), mRNA.					
Rattus norvegicus	RefSeq	GI_13592022-S	ILMN_276807	PDPK1	NM_031081.1	NM_031081.1		81745	13592022	NM_031081.1	Pdpk1	NP_112343.1	ILMN_1359177	0002900487	S	1800	CCACCCAGGACGCTTCCAGACCACCTGCCAGCCATCTCAAGGAGAACATA	10	-	13329737-13329786	10q12	Rattus norvegicus 3-phosphoinositide dependent protein kinase-1 (Pdpk1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell [goid 6972] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of a 3-phosphoinositide [goid 4676] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of a 3-phosphoinositide [goid 4676] [evidence ISS]; Interacting selectively with the insulin receptor [goid 5158] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_17978460-S	ILMN_282578	DBC1	NM_080482.1	NM_080482.1		140610	17978460	NM_080482.1	Dbc1	NP_536730.1	ILMN_1365134	0004010403	S	2307	ACAGTCTGACCAGATGACAGCCAAACTCTGCTAACCCGGGACCCTTTGCC	5	-	86070316-86070333:86070334-86070365	5q31	Rattus norvegicus deleted in bladder cancer 1 (human) (Dbc1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656285-S	ILMN_58228	PER1	XM_340822.2	XM_340822.2		287422	62656285	XM_340822.2	Per1	XP_340823.2	ILMN_1353839	0003520341	S	4314	GACTGTCCGTCTGGTTAAGGCTGCTGACAAGCTGCTGAAGTGGTCTCTCC				10q24	PREDICTED: Rattus norvegicus period homolog 1 (Drosophila) (Per1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IMP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577494-S	ILMN_295465	OLR485	NM_001000307.1	NM_001000307.1		295751	47577494	NM_001000307.1	Olr485	NP_001000307.1	ILMN_1356525	0001190563	S	418	GCAGGAAAAGTACGTTGGGGGCTGGTACTGGTTCCCTATCTCTACAGCAT	3	-	69395014-69395063	3q24	Rattus norvegicus olfactory receptor 485 (Olr485), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr485	Olr485
Rattus norvegicus	RefSeq	GI_8393112-A	ILMN_265720	SLC6A8	NM_017348.1	NM_017348.1		50690	8393112	NM_017348.1	Slc6a8	NP_059044.1	ILMN_1376744	0002470463	S	3858	CAGGGAGGTGGGGCTGGGTAAGGGTGCAAGCCTTTGGGGACATTCTTACT				Xq37	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, creatine), member 8 (Slc6a8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of creatine into, out of, within or between cells. Creatine is a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 15881] [evidence IDA]	Enables the directed movement of creatine into, out of, within or between cells. Creatine is a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 5308] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: creatine(out) + Na+(out) = creatine(in) + Na+(in) [goid 5309] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: creatine(out) + Na+(out) = creatine(in) + Na+(in) [goid 5309] [evidence IEA]; Catalysis of the transfer of choline from one side of the membrane to the other. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 15220] [evidence NAS]; Catalysis of the transfer of choline from one side of the membrane to the other. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 15220] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	CHOT1; CHT1	CHOT1; CHT1
Rattus norvegicus	RefSeq	GI_11968095-S	ILMN_283110	RPL24	NM_022515.1	NM_022515.1		64307	11968095	NM_022515.1	Rpl24	NP_071960.1	ILMN_1353774	0004540148	S	413	GGCTCCCACAAAGGCAGCCCCTAAACAAAAGATTGTGAAGCCTGTGAAGG	11	-	45628911-45628960	11q12	Rattus norvegicus ribosomal protein L24 (Rpl24), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence IDA]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the large ribosomal subunit [goid 27] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IC ]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The cell cycle process where a cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place [goid 10458] [evidence ISS]; The process whose specific outcome is the progression of the optic nerve over time, from its formation to the mature structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21554] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence ISS]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639385-S	ILMN_52604	ABPA_PREDICTED	XM_341838.2	XM_341838.2		361551	62639385	XM_341838.2	Abpa_predicted	XP_341839.1	ILMN_1369646	0002510593	S	260	AAGCCAGCCCGTTGTGTTGATGGGTATGTCTTTGACCACAAGGAAGCCAC				1q21	PREDICTED: Rattus norvegicus androgen binding protein, alpha (predicted) (Abpa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507116-S	ILMN_274240	SLC22A3	NM_019230.1	NM_019230.1		29504	9507116	NM_019230.1	Slc22a3	NP_062103.1	ILMN_1352040	0007040114	S	3204	GTGGAGAACATAAGACATGTGTGCCACCCCAGAGAAGATGTGCGTGTGAC	1	+	42781608-42781657	1q11	Rattus norvegicus solute carrier family 22 (extraneuronal monoamine transporter), member 3 (Slc22a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence IDA]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence IDA]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence ISS]; The directed movement of organic cations into, out of, within or between cells. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage [goid 15695] [evidence IDA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IMP]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence IEA]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence ISS]; The directed movement into, out of, within or between cells of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15697] [evidence ISS]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence IEA]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence ISS]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence IDA]; Any process which modulates appetite, the desire or physical craving for food [goid 32098] [evidence IEA]; Any process which modulates appetite, the desire or physical craving for food [goid 32098] [evidence ISS]; The directed movement of histamine into, out of, within or between cells. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 51608] [evidence ISS]; The directed movement of histamine into a cell, typically presynaptic neurons or glial cells. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 51615] [evidence IEA]; The directed movement of histamine into a cell, typically presynaptic neurons or glial cells. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 51615] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of dopamine from one side of the membrane to the other. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 5329] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IEA]; Catalysis of the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage [goid 15101] [evidence IDA]; Catalysis of the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage [goid 15101] [evidence ISS]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IMP]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence IEA]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence ISS]; Catalysis of the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups [goid 15651] [evidence ISS]; Enables the directed movement of a toxin into, out of, within or between cells. A toxin is a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 19534] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_47576378-S	ILMN_265380	OLR1555	NM_001000726.1	NM_001000726.1		404980	47576378	NM_001000726.1	Olr1555	NP_001000726.1	ILMN_1368243	0006110056	S	771	CATGTATGTGCTCCCTGCATCTTCAGAAGTAGATGCTCAAGACATGATCC	11	-	42296658-42296707	11q12	Rattus norvegicus olfactory receptor 1555 (Olr1555), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1555	Olr1555
Rattus norvegicus	RefSeq	GI_27671779-S	ILMN_275606	RGD1304810_PREDICTED	XM_001066385.1	XM_001066385.1		306504	109504287	XM_001066385.1	RGD1304810_predicted	XP_001066385.1	ILMN_2040732	0000010575	S	979	GACAACTTCATTGGACACAAGGGAGGAGAGAGTAGGAGGAAGGAGGGGGG				16q12.2	PREDICTED: Rattus norvegicus similar to 6430573F11Rik protein (predicted) (RGD1304810_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667051-S	ILMN_63865	LOC302415	XM_228556.3	XM_228556.3		302415	62667051	XM_228556.3	LOC302415	XP_228556.3	ILMN_1368581	0005550594	S	1233	AGGAACAGGGAAGGGGGAGCTTGGGGAGTTTGGCTGAGGGTCTGGGAAAT				Xq31	PREDICTED: Rattus norvegicus similar to forkhead protein AFXH (LOC302415), mRNA.					
Rattus norvegicus	RefSeq	GI_57114303-S	ILMN_292637	PAN2	NM_001008862.1	NM_001008862.1		408200	57114303	NM_001008862.1	Pan2	NP_001008862.1	ILMN_1355941	0004670706	S	3394	GAGACCCATGACAGTATTGAGGATGCCCGCACAGCCCTTCAGCTCTACCG	7	+	1608946-1608995	7q11	Rattus norvegicus PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae) (Pan2), mRNA.					
Rattus norvegicus	RefSeq	GI_62654067-S	ILMN_291218	TBX18_PREDICTED	XM_001063222.1	XM_001063222.1		315870	109485068	XM_001063222.1	Tbx18_predicted	XP_001063222.1	ILMN_1650771	0002060184	S	1285	CAAGCCCGTTCCCTCGGGAGAGGGAGTGAAGGCGTTCTCCTTTCCAGAAA				8q31	PREDICTED: Rattus norvegicus T-box18 (predicted) (Tbx18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649357-S	ILMN_47738	LOC298270	XM_233230.3	XM_233230.3		298270	62649357	XM_233230.3	LOC298270	XP_233230.3	ILMN_1351148	0002510093	S	1605	AGATCTTACATCACTGGCTTCCATGAACACAACCGCAGGGAGCACGGCTC				5q33	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (LOC298270), mRNA.					
Rattus norvegicus	RefSeq	GI_47576536-S	ILMN_286833	OLR1632	NM_001000836.1	NM_001000836.1		405125	47576536	NM_001000836.1	Olr1632	NP_001000836.1	ILMN_1353281	0002370148	S	12	CCCCCGCAGATATGTAGATACCATGAACACATCCGCAACGTATGTAACTG	15	-	26610090-26610139	15p14	Rattus norvegicus olfactory receptor 1632 (Olr1632), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1632	Olr1632
Rattus norvegicus	RefSeq	GI_62646961-S	ILMN_66770	ZC3HC1_PREDICTED	XM_216113.4	XM_216113.4		296957	109471820	XM_216113.4	Zc3hc1_predicted	XP_216113.4	ILMN_1352243	0001410706	S	1327	AGGAGAATGGGAAAACGGAAGTGGAAGCCTGTACCCCAGCAGAGCCAGGC	4	-	57283979-57284028	4q22	PREDICTED: Rattus norvegicus zinc finger, C3HC-type 1 (predicted) (Zc3hc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506814-S	ILMN_66664	INS1	NM_019129.2	NM_019129.2		24505	81295408	NM_019129.2	Ins1	NP_062002.1	ILMN_1370839	0006590687	S	178	AACGTGGTTTCTTCTACACACCCAAGTCCCGTCGTGAAGTGGAGGACCCG	1	+	258001430-258001479	1q55	Rattus norvegicus insulin 1 (Ins1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with the insulin receptor [goid 5158] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_58865591-A	ILMN_290842	ZNF18	NM_001012008.1	NM_001012008.1		303226	58865591	NM_001012008.1	Znf18	NP_001012008.1	ILMN_1376866	0007000731	S	2039	TTCTAGAGCAGGCTGTCACAGAAGGGGAGGCAGTTCGGCCTGCGAGTGCA	10	-	52519018-52519067	10q24	Rattus norvegicus zinc finger protein 18 (Znf18), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657496-S	ILMN_271347	TEX19	NM_001017482.1	NM_001017482.1		498033	62945319	NM_001017482.1	Tex19	NP_001017482.1	ILMN_1349196	0001850184	S	1525	GGTGGAGTGTTGTGTAGTGGGTGTTGTGGGGGTCCCAGTCACAGATCTTG	10	+	110378944-110378993	10q32.3	Rattus norvegicus testis expressed gene 19 (Tex19), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62664430-S	ILMN_50831	LOC498868	XM_579877.1	XM_579877.1		498868	62664430	XM_579877.1	LOC498868	XP_579877.1	ILMN_1355398	0004050494	S	483	ACGCCTGGGGGGAGGGCAGAGTACCTCGGAGCTGCTGGGATTTTAGGAAA					PREDICTED: Rattus norvegicus LOC498868 (LOC498868), mRNA.					
Rattus norvegicus	RefSeq	GI_62646222-S	ILMN_264724	MYL9_PREDICTED	XM_001067182.1	XM_001067182.1		296313	109471183	XM_001067182.1	Myl9_predicted	XP_001067182.1	ILMN_1365811	0000060458	S	614	GATTCACGGATGAGGAGGTGGACGAGATGTACCGTGAGGCGCCCATTGAT				3q42	PREDICTED: Rattus norvegicus myosin, light polypeptide 9, regulatory (predicted) (Myl9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654148-S	ILMN_295485	RASA2	XM_001065409.1	XM_001065409.1		25597	109485117	XM_001065409.1	Rasa2	XP_001065409.1	ILMN_1352985	0002510687	S	3689	GCAGTTGAAGCAAGTGCACCCTGAAGAGGAGTGATACACTTGGCTTCCTC				8q31	PREDICTED: Rattus norvegicus RAS p21 protein activator 2 (Rasa2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Ras superfamily [goid 5099] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652236-S	ILMN_269419	RGD1561255_PREDICTED	XM_001055013.1	XM_001055013.1		299830	109482057	XM_001055013.1	RGD1561255_predicted	XP_001055013.1	ILMN_1365189	0005910128	S	3591	GAGCTTCGCACAACCACCAGACTGTCAGCCAAGGCCCTGTCACGGGAAAT				7q22	PREDICTED: Rattus norvegicus similar to Leucine-rich and immunoglobulin-like domains 3 (predicted) (RGD1561255_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641852	ILMN_61775	B3GAT3_PREDICTED	XM_238155.3	XM_238155.3		293722	62641852	XM_238155.3	B3gat3_predicted	XP_238155.2	ILMN_1651085	0002060528	S	1379	CAGGCTGGGGACAAGCAGCTTCTGTAGTGAGCCAGGTCAGCCCCATCTGG					PREDICTED: Rattus norvegicus beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) (predicted) (B3gat3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476115-S	ILMN_280339	FBLN5	NM_019153.2	NM_019153.2		29158	42476115	NM_019153.2	Fbln5	NP_062026.2	ILMN_1361708	0001410195	S	2154	CTTGCATGTGCTGAGAAGGCTATGGGAACACGTCACAGCAGGATCAAAGG	6	-	126018782-126018831	6q32	Rattus norvegicus fibulin 5 (Fbln5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667418-S	ILMN_61562	LOC501646	XM_580223.1	XM_580223.1		501646	62667418	XM_580223.1	LOC501646	XP_580223.1	ILMN_1366097	0002570673	S	1014	CTAAGGATGCAACTGAAGCATGTATTACCGTCCCCGGTGTAATAGCTGGC					PREDICTED: Rattus norvegicus LOC501646 (LOC501646), mRNA.					
Rattus norvegicus	RefSeq	GI_62660812-S	ILMN_56599	RGD1309870_PREDICTED	XM_214086.4	XM_214086.4		289778	109500049	XM_214086.4	RGD1309870_predicted	XP_214086.4	ILMN_1355254	0002650112	S	1200	CCGCCTCTTACTACAAGAAATGAGAGTTGACCGCTTCCGTCACCAGGGCC	14	+	92376993-92376995:92383225-92383271	14q21	PREDICTED: Rattus norvegicus hypothetical LOC289778 (predicted) (RGD1309870_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426784-S	ILMN_291153	ASMT	NM_144759.1	NM_144759.1		246281	21426784	NM_144759.1	Asmt	NP_653360.1	ILMN_1354331	0005360500	S	1424	CGGGGCAGGAAATGAACCCAGAAGTGGCACCCTCAAGCAAGGAGACTGGA	12	-	16811968-16812017	12q11	Rattus norvegicus acetylserotonin O-methyltransferase (Asmt), mRNA.		The chemical reactions and pathways resulting in the formation of melatonin (N-acetyl-5-methoxytryptamine) [goid 30187] [evidence IDA]	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + N-acetylserotonin = S-adenosyl-L-homocysteine + melatonin (N-acetyl-5-methoxytryptamine) [goid 17096] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + N-acetylserotonin = S-adenosyl-L-homocysteine + melatonin (N-acetyl-5-methoxytryptamine) [goid 17096] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654020-S	ILMN_59297	LOC501024	XM_576434.1	XM_576434.1		501024	62654020	XM_576434.1	LOC501024	XP_576434.1	ILMN_1356029	0003170180	S	914	CCCAGTGGGACTCAATACAGCCTCTGTGAATCCTGTTGATAACCCAGTGG					PREDICTED: Rattus norvegicus similar to filamin A interacting protein 1 (LOC501024), mRNA.					
Rattus norvegicus	RefSeq	GI_62650373-S	ILMN_266457	LOC362703	XM_001061088.1	XM_001061088.1		362703	109478955	XM_001061088.1	LOC362703	XP_001061088.1	ILMN_1364095	0003140048	S	1950	GTGAGAATGATGAGGCTGTCGACGAGGAAGATGAGGACAGAGAAGCGGCG				6q13	PREDICTED: Rattus norvegicus similar to WD-repeat protein 43 (LOC362703), mRNA.					
Rattus norvegicus	RefSeq	GI_31343427-S	ILMN_297996	KCNIP4	NM_181365.2	NM_181365.2		259243	31343427	NM_181365.2	Kcnip4	NP_852030.1	ILMN_1371457	0004730750	S	1136	CGGTGCCTTGACCGGAGGCAAATGTGGACGACTACACACGAGTTGAAGCC				14q11	Rattus norvegicus Kv channel interacting protein 4 (Kcnip4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kchip4	Kchip4
Rattus norvegicus	RefSeq	GI_62639876	ILMN_68182	LOC502332	XM_577797.1	XM_577797.1		502332	62639876	XM_577797.1	LOC502332	XP_577797.1	ILMN_1650195	0002350601	S	75	AGAGGAGCTGGGTCGAGCATGTCCGGGTGAGGCAAGCAGGGGGATAAAGT				1q22	PREDICTED: Rattus norvegicus similar to Histone H2A.291.A (LOC502332), mRNA.					
Rattus norvegicus	RefSeq	GI_11024651-S	ILMN_282899	TGFB1	NM_021578.1	NM_021578.1		59086	11024651	NM_021578.1	Tgfb1	NP_067589.1	ILMN_1356448	0006760347	S	1236	GGCACCGGAGAGCCCTGGATACCAACTACTGCTTCAGCTCCACAGAGAAG	1	+	80903054-80903089:80910081-80910094	1q21	Rattus norvegicus transforming growth factor, beta 1 (Tgfb1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks [goid 5796] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence IDA]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence IDA]; Tolerance induction directed at self antigens [goid 2513] [evidence IEA]; Tolerance induction directed at self antigens [goid 2513] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6754] [evidence IEA]; The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6754] [evidence ISS]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEA]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS];  [goid 7184] [evidence IDA];  [goid 7184] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence IDA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence IEA]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence ISS]; A response of an organism to a fungus that prevents the occurrence or spread of disease [goid 9817] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence IEA]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence IEA]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence ISS]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [evidence IEA]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that activates or increases the rate of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity) [goid 31536] [evidence IDA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence IEA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-17 production [goid 32740] [evidence ISS]; The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form [goid 32943] [evidence IEA]; The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form [goid 32943] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein [goid 35307] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein [goid 35307] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence TAS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus [goid 42306] [evidence IEA]; Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus [goid 42306] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IMP]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence IEA]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; The formation of bone involved in the continuous turnover of bone matrix and mineral [goid 43932] [evidence ISS]; The process by which a relatively unspecialized T cell acquires specialized features of a regulatory T cell. Regulatory T cells control or suppress immune responses through a variety of mechanisms and subsets include the CD4+CD25+ cell type as well as certain CD8+ cell types [goid 45066] [evidence IEA]; The process by which a relatively unspecialized T cell acquires specialized features of a regulatory T cell. Regulatory T cells control or suppress immune responses through a variety of mechanisms and subsets include the CD4+CD25+ cell type as well as certain CD8+ cell types [goid 45066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes [goid 48298] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes [goid 48298] [evidence ISS]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of phagocytosis [goid 50765] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50777] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IDA]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 51101] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 51101] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51280] [evidence IDA]	Interacting selectively with a type II transforming growth factor beta receptor [goid 5114] [evidence ISS]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IC ]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_40254764-S	ILMN_281424	ARL6IP5	NM_023972.2	NM_023972.2		66028	40254764	NM_023972.2	Arl6ip5	NP_076462.1	ILMN_1348986	0001190014	S	1196	GCAGGTGTTTCTTGCAAACTAAATGTCAACCTCCTGGGGTAGGGTTGGGG	4	+	131953652-131953701	4q34	Rattus norvegicus ADP-ribosylation factor-like 6 interacting protein 5 (Arl6ip5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence ISS]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 51051] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IDA]	Gtrap3-18	Gtrap3-18
Rattus norvegicus	RefSeq	GI_27671089-S	ILMN_283994	KRTAP15_PREDICTED	XM_001071595.1	XM_001071595.1		288297	109493961	XM_001071595.1	Krtap15_predicted	XP_001071595.1	ILMN_1365999	0000770132	S	328	GGATCCTTTGGATTCGGAAGCTGCGGCATTCGCTCTCAGGGCTTTGGATG				11q11	PREDICTED: Rattus norvegicus keratin associated protein 15 (predicted) (Krtap15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758367-S	ILMN_267266	RAB14	NM_053589.1	NM_053589.1		94197	16758367	NM_053589.1	Rab14	NP_446041.1	ILMN_1348958	0001410563	S	606	ACGGCTAACCAGTGAACCCCAACCCCAGAGAGAAGGCTGTGGCTGCTAGT	3	-	14245802-14245803:14245804-14245851	3p11	Rattus norvegicus RAB14, member RAS oncogene family (Rab14), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IDA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence IDA]; The continuous network of membranes encompassing the outer nuclear membrane and the endoplasmic reticulum [goid 42175] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes [goid 6895] [evidence TAS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence NAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence NAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence NAS]; The directed movement of substances within a cell [goid 46907] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665076-S	ILMN_285775	RGD1562660_PREDICTED	XM_001070021.1	XM_001070021.1		302083	109508579	XM_001070021.1	RGD1562660_predicted	XP_001070021.1	ILMN_1357724	0000360332	S	658	GTGGCTAGCACAGCCTTCAACATGGACAACGGCAAGTACAACGTGGTCCG				19q11	PREDICTED: Rattus norvegicus RGD1562660 (predicted) (RGD1562660_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658980-S	ILMN_59221	RGD1565800_PREDICTED	XM_222215.4	XM_222215.4		304529	109496048	XM_222215.4	RGD1565800_predicted	XP_222215.4	ILMN_1357329	0002260576	S	1940	TGGTGGGGCAGGAGACGAGGGAGACAGAGGAGGAGTTGCCGAAAGAGATA	12	-	40433136-40433185	12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20674 (predicted) (RGD1565800_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27721916-S	ILMN_287648	DPPA5_PREDICTED	XM_001059859.1	XM_001059859.1		301101	109485027	XM_001059859.1	Dppa5_predicted	XP_001059859.1	ILMN_1349153	0000670112	S	154	CGAGCCATGTTTGAACTGAAGATTCTGGAATCTTCCGGACTTACGGAGGT				8q31	PREDICTED: Rattus norvegicus developmental pluripotency associated 5 (predicted) (Dppa5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654935-S	ILMN_63473	LIPT1_PREDICTED	XM_237067.3	XM_237067.3		316342	109485974	XM_237067.3	Lipt1_predicted	XP_237067.1	ILMN_1359855	0005220433	S	1018	GAACGGACGAATCGAAACCTGCGATATTAAGGCACCCGATCACTGGCTGC	9	+	36825759-36825808	9q21	PREDICTED: Rattus norvegicus lipoyltransferase 1 (predicted) (Lipt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12408301-S	ILMN_301802	SLC30A1	NM_022853.1	NM_022853.1		58976	12408301	NM_022853.1	Slc30a1	NP_074044.1	ILMN_1349890	0006520687	S	2142	GAGGGGTAGTTACGTGCCCTTTGAGATCATAAGCCTAGCATAATTGCAGC				13q27	Rattus norvegicus solute carrier family 30 (zinc transporter), member 1 (Slc30a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IDA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IDA]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence IEA]; The regulation of the levels, transport, and metabolism of zinc ions within a cell or between a cell and its external environment [goid 6882] [evidence ISS]	Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence IMP]; Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718734-S	ILMN_56941	LOC501460	XM_580195.1	XM_580195.1		501460	62718734	XM_580195.1	LOC501460	XP_580195.1	ILMN_1370170	0006200341	S	491	GAAGGATCTCGAAGATATCTTGGGAGGCGGGGGATACAAACCTGAGAAGG					PREDICTED: Rattus norvegicus LOC501460 (LOC501460), mRNA.					
Rattus norvegicus	RefSeq	GI_62642709-S	ILMN_57372	LOC499503	XM_574827.1	XM_574827.1		499503	62642709	XM_574827.1	LOC499503	XP_574827.1	ILMN_1352266	0006350170	S	712	GGAAGGGGCAGCACAGGTCTTTCTGGTTGCTGCCACTGCGGAGAGCCCCG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499503), mRNA.					
Rattus norvegicus	RefSeq	GI_13928849-S	ILMN_291328	PHGDH	NM_031620.1	NM_031620.1		58835	13928849	NM_031620.1	Phgdh	NP_113808.1	ILMN_1357966	0006650647	S	1575	GGGTACAGCTGCTGTCCTACCAGACCTCCAAGGTGTCTGACGGAGACACT	2	-	193148121-193148170	2q34	Rattus norvegicus 3-phosphoglycerate dehydrogenase (Phgdh), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the formation of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6564] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine [goid 9070] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+ [goid 4617] [evidence IDA]; Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+ [goid 4617] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MGC105399	MGC105399
Rattus norvegicus	RefSeq	GI_62665716-S	ILMN_283044	ZFP523_PREDICTED	XM_001068197.1	XM_001068197.1		361809	109509757	XM_001068197.1	Zfp523_predicted	XP_001068197.1	ILMN_1355751	0002810136	S	2282	AGGGGCCTGTGGCTGGCGTAAGGTGCCTCTTCACTTGTCTGTGGCAGAAA				20p12	PREDICTED: Rattus norvegicus zinc finger protein 523 (predicted) (Zfp523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42734499-S	ILMN_300386	ECHS1	NM_078623.2	NM_078623.2		140547	42734499	NM_078623.2	Echs1	NP_511178.1	ILMN_1373267	0005910452	S	1184	GTGAGCTTCAAGAGGGAAGTGGCCCTGCCTGCTGATTCCAAGCACGAGAA	1	-	199901813-199901862	1q41	Rattus norvegicus enoyl Coenzyme A hydratase, short chain, 1, mitochondrial (Echs1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O [goid 4300] [evidence IEA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O [goid 4300] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51491890-S	ILMN_278708	CASP6	NM_031775.2	NM_031775.2		83584	51491890	NM_031775.2	Casp6	NP_113963.2	ILMN_1357106	0000540053	S	884	CGCTGGTGAACAGGAAGGTCTCTCAGCGCCGTGTGGATTTCTGCAAAGAC	2	+	227373181-227373230	2q43	Rattus norvegicus caspase 6 (Casp6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence IEP]; An acute inflammatory response to non-antigenic stimuli such as heat or physical trauma [goid 2525] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus [goid 10038] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of programmed cell death that occurs in the retina [goid 46670] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Mch2; MGC93335	Mch2; MGC93335
Rattus norvegicus	RefSeq	GI_27699630-S	ILMN_65968	LOC364357	XM_344380.2	XM_344380.2		364357	62662122	XM_344380.2	LOC364357	XP_344381.2	ILMN_1354265	0002940731	S	1293	GTCCAGCAGAGTCCTTCAGCCCTGAGTCTCCACGAGGGAAACAATTCTGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC364357), mRNA.					
Rattus norvegicus	RefSeq	GI_62648293-A	ILMN_289884	STRAP	NM_001011969.1	NM_001011969.1		297699	58865511	NM_001011969.1	Strap	NP_001011969.1	ILMN_1376474	0004120082	S	1441	CAGGAGGAGTCTGTTCACCTAGTGCCTGCCAAAGCCTGCTGCCGTGATGA	4	+	174877459-174877508	4q44	Rattus norvegicus serine/threonine kinase receptor associated protein (Strap), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652655-S	ILMN_265229	RGD1560410_PREDICTED	XM_001075182.1	XM_001075182.1		362942	109482485	XM_001075182.1	RGD1560410_predicted	XP_001075182.1	ILMN_1357594	0004120600	S	1569	TCAGCAGGTGTGGTCCTCGTGGTGCTTTCATGGGTACTGTGTGCAGGCGT				7q34	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 172B (predicted) (RGD1560410_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661454-S	ILMN_65531	RGD1308773_PREDICTED	XM_224175.3	XM_224175.3		290206	109501648	XM_224175.3	RGD1308773_predicted	XP_224175.3	ILMN_1353267	0002320441	S	644	GCCCATGCCACCCACCGTGATGCTTATTCAGGGGGCTCAGTGGACCTTTT	15	+	32703130-32703179	15p13	PREDICTED: Rattus norvegicus similar to Proteasome subunit beta type 8 precursor (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) (predicted) (RGD1308773_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657183-S	ILMN_48031	RGD1560562_PREDICTED	XM_221017.4	XM_221017.4		287753	109489148	XM_221017.4	RGD1560562_predicted	XP_221017.3	ILMN_1363517	0004120398	S	1805	CCTCTCTGAAGATGAAGCCACGAGTCCAGAGGGCCACAGTGAGAGTTCCG	10	+	93369549-93369598	10q32.1	PREDICTED: Rattus norvegicus similar to intramembrane protease 5 (predicted) (RGD1560562_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51591900-S	ILMN_283872	G6B	NM_001003976.1	NM_001003976.1		406865	51591900	NM_001003976.1	G6b	NP_001003976.1	ILMN_1367189	0004480731	S	417	CAAAGTCTTGATCCCGTTGCTGGGCTTTGGGCTTGTGCTGGGACTGGGAG	20	+	3822653-3822702	20p12	Rattus norvegicus G6b protein (G6b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Ng31; C6orf25	Ng31; C6orf25
Rattus norvegicus	RefSeq	GI_13929171-S	ILMN_276387	PLK2	NM_031821.1	NM_031821.1		83722	13929171	NM_031821.1	Plk2	NP_114009.1	ILMN_1361456	0002230373	S	2497	GGAACTGTGAATAAACTTCCTGAAGGGGAGGGAGAAGGGAGGAAGCTCCC	2	+	41806230-41806279	2q14	Rattus norvegicus polo-like kinase 2 (Drosophila) (Plk2), mRNA.		Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence ISS]; Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Snk	Snk
Rattus norvegicus	RefSeq	GI_62664863-S	ILMN_264821	ZFP319_PREDICTED	XM_001061107.1	XM_001061107.1		291849	109508407	XM_001061107.1	Zfp319_predicted	XP_001061107.1	ILMN_1374588	0001500161	S	1136	TGCACGCCAGAGAGCAGCAGTTCAAGTGTGTGTGGTGCGGCGAACGCTTT				19p13	PREDICTED: Rattus norvegicus zinc finger protein 319 (predicted) (Zfp319_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164128-S	ILMN_271839	RGD1310660	NM_001009316.1	NM_001009316.1		296470	57164128	NM_001009316.1	RGD1310660	NP_001009316.1	ILMN_1369181	0005720164	S	368	AGAAGCCCGATCTCCTGTGGCCTGGCTCCTGAAACCATGAAGAAGCAGCC	3	+	170330179-170330228	3q43	Rattus norvegicus similar to RIKEN cDNA 2700038C09 (RGD1310660), mRNA.				MGC108808	MGC108808
Rattus norvegicus	RefSeq	GI_62665340-S	ILMN_269007	KCNG4_PREDICTED	XM_001077061.1	XM_001077061.1		307900	109508861	XM_001077061.1	Kcng4_predicted	XP_001077061.1	ILMN_1355865	0005700301	S	1411	GCCCGCCTCCGGCGTCTTCAGAACAACAATTCAGCCAGCGAACGGGAGCT				19q12	PREDICTED: Rattus norvegicus potassium voltage-gated channel, subfamily G, member 4 (predicted) (Kcng4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654818-S	ILMN_53662	LOC367244	XM_346035.2	XM_346035.2		367244	62654818	XM_346035.2	LOC367244	XP_346036.2	ILMN_1362912	0001500397	S	342	AGAGTCATCAGGGAGGAAGCGGAGGATCAAGAAAATTAGCCGGGTGCAGC					PREDICTED: Rattus norvegicus similar to bullous pemphigoid antigen 1, 230\/240kDa (LOC367244), mRNA.					
Rattus norvegicus	RefSeq	GI_55926144-S	ILMN_282013	NME2	NM_031833.2	NM_031833.2		83782	55926144	NM_031833.2	Nme2	NP_114021.2	ILMN_1370390	0000360397	S	246	CAAGCGATTCGAGCAGAAGGGGTTCCGCCTGGTGGCCATGAAGTTCCTTC	10	-	82587773-82587822	10q26	Rattus norvegicus non-metastatic cells 2, protein (NM23B) expressed in (Nme2), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid leukocyte differentiation [goid 2762] [evidence IDA]; The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate [goid 6165] [evidence IDA]; The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of keratinocyte differentiation [goid 45618] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of keratinocyte differentiation [goid 45618] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermis development [goid 45682] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermis development [goid 45682] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IDA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	NDKB; p18-12d	NDKB; p18-12d
Rattus norvegicus	RefSeq	GI_22507307-A	ILMN_292347	MSI1	NM_148890.1	NM_148890.1		259272	22507307	NM_148890.1	Msi1	NP_683688.1	ILMN_1376758	0006400338	S	953	AGCTCTATGGGGCAGCCAACCAGGACTCGGGGGTCAGCAGTTACATCAGC				12q16	Rattus norvegicus Musashi homolog 1(Drosophila) (Msi1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Several ribosomes bound to one mRNA [goid 5844] [evidence ISS]; Several ribosomes bound to one mRNA [goid 5844] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence NAS]; Interacting selectively with single-stranded RNA [goid 3727] [evidence ISS]; Interacting selectively with a sequence of uracil residues in an RNA molecule [goid 8266] [evidence ISS]; Interacting selectively with a sequence of uracil residues in an RNA molecule [goid 8266] [evidence IEA]	Msi1h	Msi1h
Rattus norvegicus	RefSeq	GI_57114289-S	ILMN_283608	KRT2	NM_001008899.1	NM_001008899.1		406228	57114289	NM_001008899.1	Krt2	NP_001008899.1	ILMN_1356108	0001580619	S	1667	GAGGAAGCACCTATGGCTCTGGAGGCAGAAGCTCTGGTGTCAGAGGATCT	7	-	140501244-140501293	7q36	Rattus norvegicus keratin 2 (Krt2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns [goid 31424] [evidence ISS]; A change in the morphology or behavior of a keratinocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. Upon activation, keratinocytes become migratory and hyperproliferative, and produce growth factors and cytokines [goid 32980] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; The directed movement of keratinocytes, epidermal cells which synthesize keratin, from one site to another [goid 51546] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644482-S	ILMN_280374	GBP5_PREDICTED	XM_001078845.1	XM_001078845.1		362050	109467732	XM_001078845.1	Gbp5_predicted	XP_001078845.1	ILMN_1368577	0006760154	S	1554	GAGGGCAAACTTCCAGAGAGAGCAACAGAGGAAGCAGAAGCAGAGGGTCC				2q44	PREDICTED: Rattus norvegicus guanylate nucleotide binding protein 5 (predicted) (Gbp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959233-S	ILMN_297844	GPNMB	NM_133298.1	NM_133298.1		113955	18959233	NM_133298.1	Gpnmb	NP_579832.1	ILMN_1370437	0006770088	S	2051	CATTGTGTCTGAAGGGGGAGGGGGAGGTCACTGCTACTTAAGGTCCTAGG	4	+	77182367-77182416	4q24	Rattus norvegicus glycoprotein (transmembrane) nmb (Gpnmb), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEP]	Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655961-S	ILMN_64110	LOC497883	XM_573068.1	XM_573068.1		497883	62655961	XM_573068.1	LOC497883	XP_573068.1	ILMN_1358420	0001340059	S	28	GGAACAATGGACTCGCCTACGAGTTCTCCAAGATGTGCTCAGAGAGGTGG				10q12	PREDICTED: Rattus norvegicus similar to high mobility group protein (LOC497883), mRNA.					
Rattus norvegicus	RefSeq	GI_62644695-S	ILMN_280867	EHMT1_PREDICTED	XM_001077166.1	XM_001077166.1		362078	109469519	XM_001077166.1	Ehmt1_predicted	XP_001077166.1	ILMN_1361551	0003940239	S	4728	GCCCAGCCAGTTCCGTTGACGCAGGCACCTTTTGTTGATTTCTAAGCCAC				3p13	PREDICTED: Rattus norvegicus euchromatic histone methyltransferase 1 (predicted) (Ehmt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928907-S	ILMN_279805	STX8	NM_031656.1	NM_031656.1		59074	13928907	NM_031656.1	Stx8	NP_113844.1	ILMN_1368030	0004730397	S	693	GCTGCTCGTGGCTATTGTGGTGGTTGCAGTGTGGCCAACCAACTGATGGC	10	+	54941894-54941936:54941937-54941943	10q24	Rattus norvegicus syntaxin 8 (Stx8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62661344-S	ILMN_53502	CHD8	XM_573762.2	XM_573762.2		65027	109501587	XM_573762.2	Chd8	XP_573762.2	ILMN_1363589	0005050725	S	7732	GATGCTGACGACTGAAGCCCTAATATAGACCCGTGCTGGGTGGCTGCTGG	15	-	27643168-27643203:27643204-27643217	15p14	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 8 (Chd8), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IDA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_6981525-S	ILMN_285084	SEPW1	NM_013027.1	NM_013027.1		25545	6981525	NM_013027.1	Sepw1	NP_037159.2	ILMN_1349797	0004730039	S	590	TCAAGACTGCAAGAAGACGGGCAGCCGTGTCGCCAGGTGTTCCTGGTTGA	1	-	76249895-76249944	1q21	Rattus norvegicus selenoprotein W, muscle 1 (Sepw1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]	MGC105482	MGC105482
Rattus norvegicus	RefSeq	GI_62662002-S	ILMN_50215	LOC364431	XM_344439.2	XM_344439.2		364431	62662002	XM_344439.2	LOC364431	XP_344440.2	ILMN_1373019	0003840072	S	699	GAGCTTCCCATTGCTGCCAACAGCCAACAGCAGCCCACAGACTTGGTCAG					PREDICTED: Rattus norvegicus similar to ribosomal protein S15 - African clawed frog (LOC364431), mRNA.					
Rattus norvegicus	RefSeq	GI_62663504-S	ILMN_58963	LOC498745	XM_574023.1	XM_574023.1		498745	62663504	XM_574023.1	LOC498745	XP_574023.1	ILMN_1364944	0002360592	S	1732	TGCCAGCCCAGGTTACTGTATCCAGCAAAACTCTCAATTAACATTGATGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498745), mRNA.					
Rattus norvegicus	RefSeq	GI_62642626-S	ILMN_52777	LOC365516	XM_345069.2	XM_345069.2		365516	62642626	XM_345069.2	LOC365516	XP_345070.2	ILMN_1358212	0005220671	S	385	TGAGACTTGTGGGACGGAGGAGCTGGGGTTTGTGCCAGGAGGGGCTGAGG					PREDICTED: Rattus norvegicus similar to Eps8 (LOC365516), mRNA.					
Rattus norvegicus	RefSeq	GI_62658497-S	ILMN_270997	SLC29A4_PREDICTED	XM_001072979.1	XM_001072979.1		288499	109496636	XM_001072979.1	Slc29a4_predicted	XP_001072979.1	ILMN_1351615	0001980008	S	1609	AAAAGTGAGCCCCAAGCAGCGGGAGCTGGCAGGGAACACCATGACTGTGT				12p11	PREDICTED: Rattus norvegicus solute carrier family 29 (nucleoside transporters), member 4 (predicted) (Slc29a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27716114-S	ILMN_263792	HEYL_PREDICTED	XM_001055126.1	XM_001055126.1		313575	109477184	XM_001055126.1	Heyl_predicted	XP_001055126.1	ILMN_2040025	0005910482	S	906	CTGATGACAGTGCGTCTGGTTCTATCTCTAGTCCGTCTCCTTTGGGACCA				5q36	PREDICTED: Rattus norvegicus hairy/enhancer-of-split related with YRPW motif-like (predicted) (Heyl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866337-S	ILMN_294218	RGD1564278_PREDICTED	XM_001053101.1	XM_001053101.1		312994	109476131	XM_001053101.1	RGD1564278_predicted	XP_001053101.1	ILMN_1359166	0006840487	S	848	GTCTCGATCCCCCGGCCACAGCCGACACAGGAGCCGATCCAGTTCCAATT				5q13	PREDICTED: Rattus norvegicus similar to splicing-related factor RNPS1 (predicted) (RGD1564278_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644169-S	ILMN_62664	GSTM6_PREDICTED	XM_215682.4	XM_215682.4		295362	109465360	XM_215682.4	Gstm6_predicted	XP_215682.2	ILMN_1356147	0005290398	S	1214	CGCCTTTCCAGGCCGTTGTTATCTGAGCCCAGCAATTGTGCCTAGCAGGC	2	-	203468930-203468979	2q34	PREDICTED: Rattus norvegicus glutathione S-transferase, mu 6 (predicted) (Gstm6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640687-S	ILMN_49579	TM2D3_PREDICTED	XM_214962.4	XM_214962.4		292995	109458875	XM_214962.4	Tm2d3_predicted	XP_214962.4	ILMN_1369090	0003840403	S	804	GAGAGCAGTGCGTAGAGTCCTTTGTGCGAGGTGGACATGGTGTAAGAGGG	1	+	120116960-120117009	1q22	PREDICTED: Rattus norvegicus TM2 domain containing 3 (predicted) (Tm2d3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646757-S	ILMN_57118	LOC499992	XM_575347.1	XM_575347.1		499992	62646757	XM_575347.1	LOC499992	XP_575347.1	ILMN_1364354	0004120687	S	482	TCATCCTGAGTGAGGTAACCCAATCACAGAAAAACACACATGGTATGCGC					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC499992), mRNA.					
Rattus norvegicus	RefSeq	GI_62661291-S	ILMN_278440	RGD1308087	NM_001030036.1	NM_001030036.1		305861	71795649	NM_001030036.1	RGD1308087	NP_001025207.1	ILMN_1356600	0000630286	S	1551	CTCACCGGATGTTACGCAGATCAGCATTCGGTTCAAGTGTTTGCTTCAGG	15	+	25070426-25070475	15p14	Rattus norvegicus similar to RIKEN cDNA 4932432K03 (RGD1308087), mRNA.	A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124703	MGC124703
Rattus norvegicus	RefSeq	GI_13928943-S	ILMN_277903	P2RY4	NM_031680.1	NM_031680.1		63843	13928943	NM_031680.1	P2ry4	NP_113868.1	ILMN_1371728	0005550088	S	948	TCCAGTGCTCTATCTCTTCACGGGGGACAAGTATCGAAACCAGCTCCAGC	X	-	88589713-88589762	Xq31	Rattus norvegicus pyrimidinergic receptor P2Y, G-protein coupled, 4 (P2ry4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence ISS]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA];  [goid 45030] [evidence ISS];  [goid 45030] [evidence IEA]	P2Y4	P2Y4
Rattus norvegicus	RefSeq	GI_8393232-S	ILMN_266708	CYP2C7	NM_017158.1	NM_017158.1		29298	8393232	NM_017158.1	Cyp2c7	NP_058854.1	ILMN_1354585	0000360551	S	1499	GATCAGGCATTTTGGCTTCTACTGTGTTGCCTTCTGCAATCCCCTTCAGG				1q53	Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 7 (Cyp2c7), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	MGC156667; Cyp2c39	MGC156667; Cyp2c39
Rattus norvegicus	RefSeq	GI_62661051	ILMN_54657	LOC302000	XM_229524.4	XM_229524.4		302000	109501197	XM_229524.4	LOC302000	XP_229524.2	ILMN_1650311	0001500735	S	539	TGTGAGGAGGGAAAGAGGTTCTGTGAGGAGGCCAGCAAGACCATCTGCAA	15	-	4628323-4628372	15p16	PREDICTED: Rattus norvegicus hypothetical LOC302000 (LOC302000), mRNA.					
Rattus norvegicus	RefSeq	GI_62647860-S	ILMN_282310	RGD1563166_PREDICTED	XM_001076969.1	XM_001076969.1		500262	109473959	XM_001076969.1	RGD1563166_predicted	XP_001076969.1	ILMN_1373321	0007000040	S	4251	CATTGGTGCATGAGGAAAAGTGGATGTGATCTGTAAGGAACCAGAGTCCC				4q34	PREDICTED: Rattus norvegicus similar to T-cell activation kelch repeat protein (predicted) (RGD1563166_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090591-S	ILMN_290586	EMP2	NM_001007721.1	NM_001007721.1		360468	56090591	NM_001007721.1	Emp2	NP_001007722.1	ILMN_1351017	0005360095	S	3031	AGTACTGTAATTCAGGGGGGTGGGGCATGTGACAGAGACAGACTAACCCG	10	+	5347939-5347988	10q11	Rattus norvegicus epithelial membrane protein 2 (Emp2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93695	MGC93695
Rattus norvegicus	RefSeq	GI_9506976-S	ILMN_264772	PLA2G2C	NM_019202.1	NM_019202.1		29387	9506976	NM_019202.1	Pla2g2c	NP_062075.1	ILMN_1360652	0006940070	S	3906	GGGCAGCCATTCATCTACACCAGGGATTGACTTTATGCCAGGCTTGTGAT	5	+	157557857-157557906	5q36	Rattus norvegicus phospholipase A2, group 2C (Pla2g2c), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate; requires Ca2+ [goid 47498] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577312-S	ILMN_268780	OLR717	NM_001000621.1	NM_001000621.1		404813	47577312	NM_001000621.1	Olr717	NP_001000621.1	ILMN_1349270	0003060075	S	113	TGGGCAACCTGCTCATTGTGTGGACAGTGATTGCCAGCCCTTCTCTAGAC	3	-	74191779-74191828	3q24	Rattus norvegicus olfactory receptor 717 (Olr717), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr717	Olr717
Rattus norvegicus	RefSeq	GI_62654180-S	ILMN_264134	NCK1_PREDICTED	XM_217246.3	XM_217246.3		300955	62654180	XM_217246.3	Nck1_predicted	XP_217246.3	ILMN_1358071	0006290673	S	1694	CCCTTGCCCCCCTCACTTGGTTATTCAAGAGAACAAAGCAGTTTGGGCTG	8	-	105346712-105346761	8q31	PREDICTED: Rattus norvegicus non-catalytic region of tyrosine kinase adaptor protein 1 (predicted) (Nck1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645395-S	ILMN_262478	CKAP5	XM_001068836.1	XM_001068836.1		311191	109470244	XM_001068836.1	Ckap5	XP_001068836.1	ILMN_1374733	0002470524	S	6238	GGTTGTATGGATCAGACTGCAGATGGGGAAGAGCAGTGGCAGCTCAAGTC				3q24	PREDICTED: Rattus norvegicus cytoskeleton associated protein 5, transcript variant 7 (Ckap5), mRNA.	A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species [goid 930] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence IDA]	Any cellular process that results in the specification, formation or maintenance of polarized microtubule-based cytoskeletal structures [goid 30951] [evidence IEA]; The directed movement of RNA, ribonucleic acids, into, out of, within or between cells [goid 50658] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized [goid 51297] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the spindle pole body (SPB). The SPB is the microtubule organizing center in fungi, and is functionally homologous to the animal cell centrosome [goid 51300] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644907-S	ILMN_279107	TOR1B	NM_001039197.1	NM_001039197.1		311854	85861169	NM_001039197.1	Tor1b	NP_001034286.1	ILMN_1369981	0005390706	S	875	TGTGCGGGCAGAGATGAGGGCCCGAGGGGCTGCTGTGGATGAAGACATTG	3	+	10022683-10022732	3p12	Rattus norvegicus torsin family 1, member B (Tor1b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC124854	MGC124854
Rattus norvegicus	RefSeq	GI_62643757-S	ILMN_63447	RIT1_PREDICTED	XM_574975.2	XM_574975.2		499652	109465068	XM_574975.2	Rit1_predicted	XP_574975.1	ILMN_1362148	0001050082	S	1144	GGTTGAGGAGCGAAACTGGCACTAAAGGTGAGTAGGTGTCTGCTGAGTGG	2	+	180859224-180859273	2q34	PREDICTED: Rattus norvegicus Ras-like without CAAX 1 (predicted) (Rit1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648650-S	ILMN_290220	RGD1562060_PREDICTED	XM_001069696.1	XM_001069696.1		502939	109476088	XM_001069696.1	RGD1562060_predicted	XP_001069696.1	ILMN_1372753	0005360672	S	693	AACCAAGTATCCACTTCTCTTACCTCTCCTGGAGCAGGAATTCGTGGCCC				5q12	PREDICTED: Rattus norvegicus similar to short chain dehydrogenase reductase 9 (predicted) (RGD1562060_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758639-A	ILMN_263779	SACM1L	NM_053798.1	NM_053798.1		116482	16758639	NM_053798.1	Sacm1l	NP_446250.1	ILMN_1376512	0000580242	S	3548	CACGTGGAACCAGTAGTGTGGCTGCTTTGCAAGGAGTAATGTCAGAGGGT				8q32	Rattus norvegicus SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae) (Sacm1l), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IDA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of removing one or more phosphate groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46856] [evidence IDA]	Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IMP]	Sac1	Sac1
Rattus norvegicus	RefSeq	GI_62638576-S	ILMN_263574	RGD1561767_PREDICTED	XR_007319.1	XR_007319.1		499028	109460824	XR_007319.1	RGD1561767_predicted		ILMN_1367885	0001770102	S	443	ACTGGAAAGGAGAGGCGAGGGTGAAAGGTCGGATGAAGAAAACGATGGGA				1q12	PREDICTED: Rattus norvegicus RGD1561767 (predicted) (RGD1561767_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664384-S	ILMN_282689	ATG12	NM_001038495.1	NM_001038495.1		361321	84042516	NM_001038495.1	Atg12	NP_001033584.1	ILMN_1368688	0006520041	S	2247	CCCCTTTCCCTGCGCCCCTTGCAGTGAGTTAATGCAGGGAATAGTTCACA	18	-	40934063-40934112	18q11	Rattus norvegicus ATG12 autophagy related 12 homolog (S. cerevisiae) (Atg12), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence ISS]; The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC125080; Apg12l	MGC125080; Apg12l
Rattus norvegicus	RefSeq	GI_62653214-S	ILMN_271886	MMP20_PREDICTED	XM_235796.3	XM_235796.3		300341	62653214	XM_235796.3	Mmp20_predicted	XP_235796.3	ILMN_1367205	0004060528	S	3199	GCACACCAGTGTTCATGGCAGCATTATTTGCAGTAGCCAAAAGTGGACAG	8	+	4507750-4507799	8q11	PREDICTED: Rattus norvegicus matrix metalloproteinase 20 (enamelysin) (predicted) (Mmp20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657426-S	ILMN_271143	TMEM104_PREDICTED	XM_001081674.1	XM_001081674.1		303670	109492211	XM_001081674.1	Tmem104_predicted	XP_001081674.1	ILMN_1370278	0002350168	S	1309	CGCAACAACTGGAAAACACTCTTCCACCGTGAAGGTGGCACCTACCCATG				10q32.2	PREDICTED: Rattus norvegicus transmembrane protein 104 (predicted) (Tmem104_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928847-S	ILMN_267627	PRG2	NM_031619.1	NM_031619.1		58826	13928847	NM_031619.1	Prg2	NP_113807.1	ILMN_1357029	0005690300	S	520	AGGGTCAAGTCTGGATTGGAGGCAGGATTGTGGGCTGGGGTCGCTGCAAA	3	+	68212344-68212381:68212821-68212832	3q24	Rattus norvegicus proteoglycan 2, bone marrow (Prg2), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62641800-S	ILMN_59182	LOC499307	XM_574607.1	XM_574607.1		499307	62641800	XM_574607.1	LOC499307	XP_574607.1	ILMN_1352229	0001850154	S	65	TGCACTGGTGCTGAGCCTGCCCGGGTTGGGAAGATGGTGAGGTATTTCCT				1q43	PREDICTED: Rattus norvegicus similar to 2610524G07Rik protein (LOC499307), mRNA.					
Rattus norvegicus	RefSeq	GI_62659828-S	ILMN_290431	RGD1562397_PREDICTED	XM_001059720.1	XM_001059720.1		364060	109499116	XM_001059720.1	RGD1562397_predicted	XP_001059720.1	ILMN_1360333	0004570008	S	42	CGACTCTAGGCTCCAGCTTGTTATGGGAAGTGGAAAGTACGTGCTGGGAC				13q25	PREDICTED: Rattus norvegicus similar to ribosomal protein L30 (predicted) (RGD1562397_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662481-S	ILMN_53954	LOC498611	XM_573889.1	XM_573889.1		498611	62662481	XM_573889.1	LOC498611	XP_573889.1	ILMN_1357697	0002510112	S	1166	CACACCAGAGTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTGGACTG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498611), mRNA.					
Rattus norvegicus	RefSeq	GI_62660418-S	ILMN_69529	GNPDA2_PREDICTED	XM_214029.4	XM_214029.4		289608	109499650	XM_214029.4	Gnpda2_predicted	XP_214029.2	ILMN_1361833	0001690446	S	1455	CAGGAGTCCTACTCATTAATCAAGGAACTCTGAGGAGATGACAGTGCCCT	14	+	41067180-41067229	14p11	PREDICTED: Rattus norvegicus glucosamine-6-phosphate deaminase 2 (predicted) (Gnpda2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27689162-S	ILMN_56506	LOC287651	XM_220913.1	XM_220913.1		287651	27689162	XM_220913.1	LOC287651	XP_220913.1	ILMN_1367556	0005910411	S	31	TTGCCAAAAAGGGCTGCGGCCATGTGCAGCCAGTTCCCTGCAGAAGCTCT					PREDICTED: Rattus norvegicus similar to ribosomal protein S26 pseudogene 3 (LOC287651), mRNA.					
Rattus norvegicus	RefSeq	GI_27545387-S	ILMN_266046	ABCA5	NM_173307.1	NM_173307.1		286970	27545387	NM_173307.1	Abca5	NP_775429.1	ILMN_1368155	0002760593	S	4945	AAGACAGAGTCGTGTTCTGAATGTCTGCGCTCACCCCGCCTGCTGACCCT	10	-	99724953-99724983:99724984-99725002	10q32.1	Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 5 (Abca5), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The directed movement of sterols into, out of, within or between cells. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 15918] [evidence NAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079098-S	ILMN_275152	ORC5L	NM_001014186.1	NM_001014186.1		362304	62079098	NM_001014186.1	Orc5l	NP_001014208.1	ILMN_1356597	0002260528	S	1925	ACACACAACAGCTTCATGTCTGACTCTGCTTGCTGCCCTGACAGTACTGG	4	+	8025796-8025845	4q11	Rattus norvegicus origin recognition complex, subunit 5-like (yeast) (Orc5l), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]	Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654482-S	ILMN_59122	OXSR1_PREDICTED	XM_236687.4	XM_236687.4		316064	109484067	XM_236687.4	Oxsr1_predicted	XP_236687.3	ILMN_1370412	0006860181	S	2987	CTGCCCAAGACGGAACCTGAAGCCACCCGTGCTGTAACCTTAGGCTCATG	8	-	124198137-124198186	8q32	PREDICTED: Rattus norvegicus oxidative-stress responsive 1 (predicted) (Oxsr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667179-S	ILMN_47870	LOC367855	XM_346327.2	XM_346327.2		367855	62667179	XM_346327.2	LOC367855	XP_346328.2	ILMN_1372314	0004540390	S	933	TGCTTCCTGGGCCAGCCAAAGCCGCAGGTGAGAACGTCCGCGGTAGAGGT				Xq31	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (LOC367855), mRNA.					
Rattus norvegicus	RefSeq	GI_47576842-S	ILMN_280573	OLR820	NM_001000974.1	NM_001000974.1		405329	47576842	NM_001000974.1	Olr820	NP_001000974.1	ILMN_1349520	0006180576	S	586	GTTGTCATCTTTGCAGCCTGTGTATTGATCTTAGTGGGGCCCCTGTGCTT	4	+	70974482-70974531	4q23	Rattus norvegicus olfactory receptor 820 (Olr820), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr820	Olr820
Rattus norvegicus	RefSeq	GI_62640779-S	ILMN_53816	HDDC3_PREDICTED	XM_218817.4	XM_218817.4		308758	109458904	XM_218817.4	Hddc3_predicted	XP_218817.1	ILMN_1353341	0000460184	S	747	GTCTTGGCTCTGTTTGCTGTTTTGCATGGTGGGACCTCTGGCCCCTTAGG	1	+	136162894-136162943	1q31	PREDICTED: Rattus norvegicus HD domain containing 3 (predicted) (Hddc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653396	ILMN_50715	LOC367028	XM_345903.2	XM_345903.2		367028	62653396	XM_345903.2	LOC367028	XP_345904.2	ILMN_1650743	0006760176	S	759	GGATGGCGACCTGCCTTCAGCAATTCTGGACTTCCTCCAAGACATCAAGG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC367028), mRNA.					
Rattus norvegicus	RefSeq	GI_62650258-S	ILMN_50900	LOC500608	XM_580090.1	XM_580090.1		500608	62650258	XM_580090.1	LOC500608	XP_580090.1	ILMN_1369693	0007040037	S	1466	CTATGTGAGGGTCCAACTGTGTCTTGCTTCCTATTTTTGCAGAAGGCAGC				6q11	PREDICTED: Rattus norvegicus LOC500608 (LOC500608), mRNA.					
Rattus norvegicus	RefSeq	GI_13676840-S	ILMN_300806	FUT1	NM_031236.1	NM_031236.1		81919	13676840	NM_031236.1	Fut1	NP_112515.1	ILMN_1349350	0002810347	S	2431	CCGGCTTTGAGAAGGTCAAGGGTGAAGGATCAGAAGGTGTTCCAGAACTG	1	+	96089044-96089093	1q22	Rattus norvegicus fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase) (Fut1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R [goid 8107] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Futa	Futa
Rattus norvegicus	RefSeq	GI_16758703-S	ILMN_299082	UPB1	NM_053845.1	NM_053845.1		116593	16758703	NM_053845.1	Upb1	NP_446297.1	ILMN_1356861	0005890551	S	1250	GCGAGAGAGTTTTCAATACCCAGGCAGGAGGAGGGTAGACTGGGCAAGCG				20p12	Rattus norvegicus ureidopropionase, beta (Upb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]; The chemical reactions and pathways involving beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins [goid 19482] [evidence IDA]; The chemical reactions and pathways resulting in the formation of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins [goid 19483] [evidence TAS]	Catalysis of the reaction: N-carbamoyl-beta-alanine + H2O = beta-alanine + CO2 + NH3 [goid 3837] [evidence IDA]; Catalysis of the reaction: N-carbamoyl-beta-alanine + H2O = beta-alanine + CO2 + NH3 [goid 3837] [evidence IEA]; Catalysis of the reaction: N-carbamoyl-beta-alanine + H2O = beta-alanine + CO2 + NH3 [goid 3837] [evidence IDA]; Catalysis of the reaction: N-carbamoyl-beta-alanine + H2O = beta-alanine + CO2 + NH3 [goid 3837] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Bup1	Bup1
Rattus norvegicus	RefSeq	GI_62638493-S	ILMN_52263	LOC365087	XM_344808.2	XM_344808.2		365087	62638493	XM_344808.2	LOC365087	XP_344809.2	ILMN_1363627	0002120368	S	2	GTCCCCAGGTCACACCTTTGCCATCTGGCTGCCACTTTCTATTTTGGGTG					PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (LOC365087), mRNA.					
Rattus norvegicus	RefSeq	GI_62659727-S	ILMN_66251	LOC498280	XM_579807.1	XM_579807.1		498280	62659727	XM_579807.1	LOC498280	XP_579807.1	ILMN_1370326	0006980021	S	172	TGGAGCCAGCTCAATCCCTGTTCTTTTCCTTCTGTTGTGAGAGCGCCCCC					PREDICTED: Rattus norvegicus LOC498280 (LOC498280), mRNA.					
Rattus norvegicus	RefSeq	GI_62641393-S	ILMN_287407	DMBT1	XM_001080554.1	XM_001080554.1		170568	109463001	XM_001080554.1	Dmbt1	XP_001080554.1	ILMN_1362121	0006400193	S	4137	CAGATGGTAAAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGGTCTAGAGG				1q37	PREDICTED: Rattus norvegicus deleted in malignant brain tumors 1 (Dmbt1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding a phagocytic vesicle [goid 30670] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The proliferation of cells in the inner cell mass [goid 1833] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation [goid 30858] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664919-I	ILMN_68240	FTS_PREDICTED	XM_574209.1	XM_574209.1		291906	62664919	XM_574209.1	Fts_predicted	XP_574209.1	ILMN_1375565	0004480138	S	89	TCTGCTGCAGACTCGCGGGCCCAGCCTGCCTCCAACTAGCTTCCAAGCTA				19p11	PREDICTED: Rattus norvegicus fused toes  (predicted) (Fts_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645090-S	ILMN_64082	LOC497770	XM_579373.1	XM_579373.1		497770	62645090	XM_579373.1	LOC497770	XP_579373.1	ILMN_1368506	0001980021	S	6474	GCTGACACTGCTGAGGAGAACTCCATTGTGCAAGTGACCCGTCATCACGC				3q21	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013119 (LOC497770), mRNA.					
Rattus norvegicus	RefSeq	GI_25282454-S	ILMN_288075	BPNT1	NM_171990.1	NM_171990.1		64473	25282454	NM_171990.1	Bpnt1	NP_741987.1	ILMN_1374947	0005690180	S	1510	GGCAGGGATTAAGGGCTTGCCCCACCATACCTGGCAGAAATGTTACTGTT	13	+	101367358-101367407	13q26	Rattus norvegicus bisphosphate 3'-nucleotidase 1 (Bpnt1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IDA]; Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate [goid 8441] [evidence TAS]; Catalysis of the reaction: adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate [goid 8441] [evidence ISS]; Catalysis of the reaction: adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate [goid 8441] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with lithium ions (Li+) [goid 31403] [evidence IEA]	MGC93112	MGC93112
Rattus norvegicus	RefSeq	GI_34854989-S	ILMN_280232	TFEC	XM_342644.1	XM_342644.1		26296	34854989	XM_342644.1	Tfec	XP_342645.1	ILMN_1349514	0005700025	S	1119	CGAGCAGTCGAAGCAGCCTTAGCTCAGAGGATGGCGATGAACTGTAAGCC	4	-	42422625-42422628:42422629-42422674	4q21	PREDICTED: Rattus norvegicus transcription factor EC (Tfec), mRNA.					
Rattus norvegicus	RefSeq	GI_42476288-S	ILMN_292997	TLR2	NM_198769.2	NM_198769.2		310553	42476288	NM_198769.2	Tlr2	NP_942064.1	ILMN_1353896	0001190707	S	2251	CGCGGCCATCCTTGTTTTGCTGGAACCCATTGAGAAGAAAGCCATTCCCC	2	-	175608283-175608332	2q34	Rattus norvegicus toll-like receptor 2 (Tlr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence IDA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octomer oligosaccharide [goid 2238] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octomer oligosaccharide [goid 2238] [evidence ISS]; The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2282] [evidence IDA]; Any series of molecular signals generated as a consequence of binding to a cell surface pattern recognition receptor (PRR). Such receptors bind for molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens [goid 2752] [evidence IEA]; Any series of molecular signals generated as a consequence of binding to a cell surface pattern recognition receptor (PRR). Such receptors bind for molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens [goid 2752] [evidence ISS]; Any series of molecular signals generated as a consequence of binding to a toll-like receptor and relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2755] [evidence IEA]; Any series of molecular signals generated as a consequence of binding to a toll-like receptor and relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2755] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence NAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipoprotein stimulus [goid 32493] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IDA]; The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, into, out of, within or between cells [goid 42892] [evidence IEA]; The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, into, out of, within or between cells [goid 42892] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA];  [goid 52033] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence IDA]; Interacting selectively, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls [goid 42834] [evidence IEA]; Interacting selectively, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls [goid 42834] [evidence ISS]; Interacting selectively with any part of a Gram-positive bacterial cell [goid 51076] [evidence IEA]; Interacting selectively with any part of a Gram-positive bacterial cell [goid 51076] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62945295	ILMN_273240	CEP70	NM_001017470.1	NM_001017470.1		367153	62945295	NM_001017470.1	Cep70	NP_001017470.1	ILMN_1530464	0003840601	S	579	GGTTTGCCAGGAACAAAATAGAATAAAAGACCTTCAAAAGGAATATAAAA	8	+	104133071-104133120	8q31	Rattus norvegicus centrosomal protein 70kDa (Cep70), mRNA.					
Rattus norvegicus	RefSeq	GI_62654162-S	ILMN_273240	CEP70	NM_001017470.1	NM_001017470.1		367153	62945295	NM_001017470.1	Cep70	NP_001017470.1	ILMN_1353004	0005690411	S	1635	GCTCCTGGGATTAGACAGTTCATCGTCATTGTGTATGGTGGTCAGCACCG	8	+	104158406-104158414:104160178-104160218	8q31	Rattus norvegicus centrosomal protein 70kDa (Cep70), mRNA.					
Rattus norvegicus	RefSeq	GI_9506380-S	ILMN_289311	AMELX	NM_019154.1	NM_019154.1		29160	9506380	NM_019154.1	Amelx	NP_062027.1	ILMN_1367363	0000630706	S	323	TGCCAGCTCAACAGCCCGTGGCCCCCCAGCAACCAATGATGCCAGTTCCT	X	+	45767246-45767295	Xq21	Rattus norvegicus amelogenin X chromosome (Amelx), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IEP]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The action of a molecule that contributes to the structural integrity of tooth enamel [goid 30345] [evidence TAS]; The action of a molecule that contributes to the structural integrity of tooth enamel [goid 30345] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	amelogenin; Amel	amelogenin; Amel
Rattus norvegicus	RefSeq	GI_62643965-S	ILMN_51143	CRNN_PREDICTED	XM_227367.4	XM_227367.4		295186	109465152	XM_227367.4	Crnn_predicted	XP_227367.4	ILMN_1372422	0004810064	S	1349	GGAACAGCAATCACCCAAGTCTGGCAGGAAGGCAGGGAGAAAGAAGCCCC	2	+	186151450-186151499	2q34	PREDICTED: Rattus norvegicus cornulin (predicted) (Crnn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643115-S	ILMN_265177	TRIO	XM_001058824.1	XM_001058824.1		310192	109466207	XM_001058824.1	Trio	XP_001058824.1	ILMN_1354030	0005340707	S	9196	GTCCTCGACACGTCCAGACTGACCTCCTTCATTGAGCGGCGCAAACACCA				2q22	PREDICTED: Rattus norvegicus triple functional domain (PTPRF interacting) (Trio), mRNA.					
Rattus norvegicus	RefSeq	GI_62652480-S	ILMN_48553	LOC500876	XM_576276.2	XM_576276.2		500876	109480813	XM_576276.2	LOC500876	XP_576276.2	ILMN_1373386	0002810025	S	1723	CCTGTGGGTCCTCCAGCCCCAGATTCAGAGATACTGCAACTACACGGAAC	7	-	96870140-96870189	7q33	PREDICTED: Rattus norvegicus LOC500876 (LOC500876), mRNA.					
Rattus norvegicus	RefSeq	GI_54019431-S	ILMN_297688	PCDHA7	NM_199507.1	NM_199507.1		393089	54019431	NM_199507.1	Pcdha7	NP_955801.1	ILMN_1358874	0002100692	S	1707	AGCTAACGGGGCTGGTGGCACAATGAGTGAGGTAGTATCTCGGGCTTTGG	18	+	29705737-29705786	18p11	Rattus norvegicus protocadherin alpha 7 (Pcdha7), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	rCNRv07	rCNRv07
Rattus norvegicus	RefSeq	GI_62717716-S	ILMN_284064	LOC364773	NM_001014240.2	NM_001014240.2		364773	85986596	NM_001014240.2	LOC364773	NP_001014262.2	ILMN_1358038	0002570348	S	119	GCGCCCGATGCCGACGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATAT	17	-	77217328-77217374:77219593-77219595	17q12.3	Rattus norvegicus similar to liver regeneration-related protein LRRG07 (LOC364773), mRNA.				TBER1-S; TBER1; x56	TBER1-S; TBER1; x56
Rattus norvegicus	RefSeq	GI_62079206-S	ILMN_284064	LOC364773	NM_001014240.2	NM_001014240.2		364773	85986596	NM_001014240.2	LOC364773	NP_001014262.2	ILMN_1373236	0006020739	S	1414	AAGAATGGGTGGACCAGAACTCCCCCGTTCTCTTGGATGATCCAATTCTC				17q12.3	Rattus norvegicus similar to liver regeneration-related protein LRRG07 (LOC364773), mRNA.				TBER1-S; TBER1; x56	TBER1-S; TBER1; x56
Rattus norvegicus	RefSeq	GI_62664173-S	ILMN_294187	ERCC3	NM_001031644.1	NM_001031644.1		291703	72255518	NM_001031644.1	Ercc3	NP_001026814.1	ILMN_1373561	0002690672	S	2195	CACTGACCTGGACGCAGAGGAGGAAGTGGTGGCTGGAGAGTTTGGCTCTA	18	+	24711590-24711639	18p12	Rattus norvegicus excision repair cross-complementing rodent repair deficiency, complementation group 3 (Ercc3), mRNA.	A complex which is part of both the general transcription factor TFIIH and the nucleotide-excision repair factor 3 complex. It is composed of the tightly associated 5 subunit core TFIIH subcomplex plus one additional, more loosely associated subunit. The subunits are well conserved from yeast to humans. In S. cerevisiae, the 5-subunit core is composed of Rad3, Tfb1, Tfb2, Ssl1, Tfb4 and the loosely associated subunit is Ssl2p (also called Rad25). In humans, the 5 subunit core is composed of XPD, p62, p55, p44, p34 and the loosely associated subunit is XPB [goid 441] [evidence IDA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex that contains kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3p, Tfb1p, Tfb2p, Ssl1p and Tfb4p), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of XPD, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB [goid 5675] [evidence ISS]	A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence IEA]; A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence ISS]; The unwinding, or local denaturation, of the DNA duplex to create a bubble around the site of the DNA damage [goid 717] [evidence IEA]; The unwinding, or local denaturation, of the DNA duplex to create a bubble around the site of the DNA damage [goid 717] [evidence ISS]; The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence IEA]; The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence ISS]; The preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the general nucleotide excision repair pathway [goid 6283] [evidence IEA]; The preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the general nucleotide excision repair pathway [goid 6283] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV [goid 9650] [evidence ISS]; Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV [goid 9650] [evidence IEA]; A process that results in the endonucleolytic cleavage of the damaged strand of DNA. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound [goid 33683] [evidence IEA]; A process that results in the endonucleolytic cleavage of the damaged strand of DNA. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound [goid 33683] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a hair cell [goid 35315] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a hair cell [goid 35315] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of the DNA helix [goid 4003] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of the DNA helix [goid 4003] [evidence IDA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Catalysis of the reaction: ATP + (DNA-directed RNA polymerase) = ADP + phospho-(DNA-directed RNA polymerase) [goid 8353] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with dATP, deoxyadenosine triphosphate [goid 32564] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Catalysis of the unwinding of the DNA helix in the direction 3' to 5' [goid 43138] [evidence IEA]; Catalysis of the unwinding of the DNA helix in the direction 3' to 5' [goid 43138] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	MGC112916	MGC112916
Rattus norvegicus	RefSeq	GI_62665020	ILMN_275684	CCDC130	NM_001037644.1	NM_001037644.1		304656	83320077	NM_001037644.1	Ccdc130	NP_001032733.1	ILMN_1650392	0003940538	S	272	GCATGGCTCTCTCAACCGATACCACAACAGCCACCCACTTCGAGAACGGG	19	+	25583776-25583777:25584138-25584185	19q11	Rattus norvegicus coiled-coil domain containing 130 (Ccdc130), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC125030	MGC125030
Rattus norvegicus	RefSeq	GI_40254782-S	ILMN_299864	SMAD1	NM_013130.2	NM_013130.2		25671	40254782	NM_013130.2	Smad1	NP_037262.2	ILMN_1372728	0001450603	S	2448	CCTGTTGCCTTAAACGGACAAGCTGGTGTCGGACTTTGCTGTGTTTCAGG	19	+	30408823-30408872	19q11	Rattus norvegicus SMAD family member 1 (Smad1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process by which a cell becomes committed to become part of the mesoderm [goid 1710] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone [goid 2051] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IMP]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; Any biological process involved in the maintenance of an internal equilibrium [goid 42592] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of dendrite morphogenesis [goid 50775] [evidence IEP]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Madh1	Madh1
Rattus norvegicus	RefSeq	GI_62658558-S	ILMN_266662	LOC288526	XM_001065854.1	XM_001065854.1		288526	109496577	XM_001065854.1	LOC288526	XP_001065854.1	ILMN_1355409	0003780020	S	1960	CGGAAAATATGACGACAGGAAGTGGCAGCCCCGAAACAGGAAGTGGTGTG				12q11	PREDICTED: Rattus norvegicus similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1 (LOC288526), mRNA.					
Rattus norvegicus	RefSeq	GI_62638710-S	ILMN_62921	LOC502256	XM_577716.1	XM_577716.1		502256	62638710	XM_577716.1	LOC502256	XP_577716.1	ILMN_1350139	0001940750	S	447	CTTACCAACCCATTGTCCTCCATGGTGCAGAGAGGTAGCATTAGTACTGA					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502256), mRNA.					
Rattus norvegicus	RefSeq	GI_62667377-S	ILMN_58971	LOC501643	XM_577040.1	XM_577040.1		501643	62667377	XM_577040.1	LOC501643	XP_577040.1	ILMN_1350587	0003520494	S	517	CATAGGCAAATAGATGGAACTGGAAAATATCATCCTGAGTGAGGTACCGC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC501643), mRNA.					
Rattus norvegicus	RefSeq	GI_62661382-S	ILMN_61727	LOC498501	XM_573765.1	XM_573765.1		498501	62661382	XM_573765.1	LOC498501	XP_573765.1	ILMN_1372426	0000610195	S	217	CTGGTATCTGCAGTATCCCGGAGAAGGTCTACAGCTCCTCTTTAGAGCCT					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC498501), mRNA.					
Rattus norvegicus	RefSeq	GI_62658007-S	ILMN_279815	RGD1560486_PREDICTED	XM_001073015.1	XM_001073015.1		288044	109494520	XM_001073015.1	RGD1560486_predicted	XP_001073015.1	ILMN_1358166	0004070279	S	285	GTCAGGTGGCCTGGCTCTGCTTGGGGCTATGATTTGCTTTCTCACTTCCG				11q22	PREDICTED: Rattus norvegicus similar to hypothetical protein BC013113 (predicted) (RGD1560486_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648614-S	ILMN_55092	LOC500405	XM_580060.1	XM_580060.1		500405	62648614	XM_580060.1	LOC500405	XP_580060.1	ILMN_1368227	0003780138	S	267	GAAGGATAATTACAGGAGACACCCAAACACCCCCAGCCTCCTCGGTCCGC					PREDICTED: Rattus norvegicus LOC500405 (LOC500405), mRNA.					
Rattus norvegicus	RefSeq	GI_34866641-S	ILMN_60000	LOC301067	XM_217295.2	XM_217295.2		301067	34866641	XM_217295.2	LOC301067	XP_217295.2	ILMN_1364448	0000630181	S	1395	GGCCTAAGAGAGTGCGGTGAACCAGAGAGATGGCTCAGCAAGGAGAGGTG				8q32	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC18873 (predicted) (LOC301067), mRNA.					
Rattus norvegicus	RefSeq	GI_62642235-S	ILMN_54885	RGD1561251_PREDICTED	XM_579950.2	XM_579950.2		499352	109460095	XM_579950.2	RGD1561251_predicted	XP_579950.2	ILMN_1358700	0003440324	S	95	TCTCACCCCCGTCTACATGGAGGAAGTTGTGCGAGTATGGGGCTTCCACG	1	-	242585193-242585227:242585228-242585242	1q53	PREDICTED: Rattus norvegicus RGD1561251 (predicted) (RGD1561251_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645183-S	ILMN_285208	RGD1308818_PREDICTED	XM_001058919.1	XM_001058919.1		311113	109470037	XM_001058919.1	RGD1308818_predicted	XP_001058919.1	ILMN_1362574	0000580154	S	1574	ACCCTATGGTAAAAGCTGTGCAGGAAGGAGTGGGAGGTGGACGTGGACCA				3q21	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1308818_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644933	ILMN_263599	RGD1305821	NM_001012349.1	NM_001012349.1		296635	59891418	NM_001012349.1	RGD1305821	NP_001012349.1	ILMN_1650397	0001740402	S	318	AGGGACAGGAACTCAGCTCGGTTGAGGACATTGTTGCGATCCCTGGCACG	3	+	11209915-11209964	3p11	Rattus norvegicus similar to RIKEN cDNA D830019K17 (RGD1305821), mRNA.				MGC109271	MGC109271
Rattus norvegicus	RefSeq	GI_62658360-S	ILMN_67264	RGD1561104_PREDICTED	XM_344064.3	XM_344064.3		363856	109494982	XM_344064.3	RGD1561104_predicted	XP_344065.3	ILMN_1374200	0006900181	S	624	CTCTGGGGACGGCTGGAATGACCTCAGATGCGATACCCGGATTTTCTGGA	12	+	2290272-2290321	12p12	PREDICTED: Rattus norvegicus similar to SIGNR3 (predicted) (RGD1561104_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675854-S	ILMN_272276	LGALS8	NM_053862.2	NM_053862.2		116641	48675854	NM_053862.2	Lgals8	NP_446314.2	ILMN_1359694	0002120348	S	2365	TCATATGGGGTGGTGGATGGAACTGGGCAATTCGTAGGGAGCCCAGGAGG	17	+	68613872-68613921	17q12.1	Rattus norvegicus lectin, galactose binding, soluble 8 (Lgals8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61557129-S	ILMN_295452	B3GALNT1	NM_001013158.1	NM_001013158.1		310508	61557129	NM_001013158.1	B3galnt1	NP_001013176.1	ILMN_1356775	0002640463	S	1273	CACTCACGGAGCCTACCTAGACTGGAGCGCCAAGGCCTGAACTTACAGTA	2	-	159671282-159671331	2q32	Rattus norvegicus beta-1,3-N-acetylgalactosaminyltransferase 1 (B3galnt1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9312] [evidence ISS]; The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9312] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the reaction: UDP-galactose + N-acetylglucosamine = galactose-beta-1,3-N-acetylglucosamine + UDP [goid 8499] [evidence ISS]; Catalysis of the reaction: UDP-galactose + N-acetylglucosamine = galactose-beta-1,3-N-acetylglucosamine + UDP [goid 8499] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide = UDP + beta-N-acetyl-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide [goid 47273] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_24025629-S	ILMN_302116	NPAS4	NM_153626.1	NM_153626.1		266734	24025629	NM_153626.1	Npas4	NP_705890.1	ILMN_1363453	0003060541	S	2285	CACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGG	1	-	207598528-207598577	1q43	Rattus norvegicus neuronal PAS domain protein 4 (Npas4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]	Nxf	Nxf
Rattus norvegicus	RefSeq	GI_62648993	ILMN_51728	LOC500460	XM_575823.2	XM_575823.2		500460	109474925	XM_575823.2	LOC500460	XP_575823.2	ILMN_1649809	0003870088	S	416	GAGTCTGTGTACAGATTGCAGGCAGCTCCTGGGTTACAGGCTGCCTCACT	5	+	70023722-70023771	5q24	PREDICTED: Rattus norvegicus similar to olfactory receptor Olr841 (LOC500460), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659069-S	ILMN_280069	PUS1	NM_001025563.1	NM_001025563.1		304567	70906465	NM_001025563.1	Pus1	NP_001020734.1	ILMN_1351578	0005670347	S	1492	CCTGGAGGGCAGTGAAGGGGATGGAGACACTGACTGAACCGTAGATGCTG	12	+	46033439-46033475:46033476-46033488	12q16	Rattus norvegicus pseudouridylate synthase 1 (Pus1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs [goid 1522] [evidence IEA]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]; The intramolecular conversion of uridine to pseudouridine in a tRNA molecule [goid 31119] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5 [goid 9982] [evidence IEA]; Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5 [goid 9982] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA];  [goid 30374] [evidence ISS]	MGC112655	MGC112655
Rattus norvegicus	RefSeq	GI_62652796-S	ILMN_64372	LOC362964	XM_343295.2	XM_343295.2		362964	62652796	XM_343295.2	LOC362964	XP_343296.2	ILMN_1359018	0001340021	S	2162	AGGCTGGATTGCCAGGAAGGCCAAGAGGACACCAACCTCCGGGGTCACCA					PREDICTED: Rattus norvegicus similar to dJ756G23.1 (novel Leucine Rich Protein) (predicted) (LOC362964), mRNA.					
Rattus norvegicus	RefSeq	GI_62648870-S	ILMN_275369	RGD1560943_PREDICTED	XM_001068924.1	XM_001068924.1		502946	109476390	XM_001068924.1	RGD1560943_predicted	XP_001068924.1	ILMN_1369930	0003170139	S	1487	GGCCCCTCAATCTGGCAGGCAGTGGCATCAGCAGTATCAACATGGCGCTA				5q22	PREDICTED: Rattus norvegicus RGD1560943 (predicted) (RGD1560943_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424151-S	ILMN_287552	MUC10	NM_133513.1	NM_133513.1		65182	19424151	NM_133513.1	Muc10	NP_598197.1	ILMN_1352767	0005130647	S	615	GCCTACCACAGATTCAACCACACCAGCACCGACCAACAAGCCTACCACAG	14	-	21294575-21294624	14p21	Rattus norvegicus mucin 10, submandibular gland salivary mucin (Muc10), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RSM-1	RSM-1
Rattus norvegicus	RefSeq	GI_16758503-S	ILMN_271745	TRPV6	NM_053686.1	NM_053686.1		114246	16758503	NM_053686.1	Trpv6	NP_446138.1	ILMN_1373456	0002900707	S	2818	TGTGGGAAAGCGTGTGATGGAGAGATACAGGCACCAGTCTAGGGGTGGGG	4	-	69332017-69332066	4q22	Rattus norvegicus transient receptor potential cation channel, subfamily V, member 6 (Trpv6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5227] [evidence TAS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	CaT1; Ecac2; Otrpc3	CaT1; Ecac2; Otrpc3
Rattus norvegicus	RefSeq	GI_62649243-S	ILMN_292908	MGC125002	NM_001034154.1	NM_001034154.1		500501	77628024	NM_001034154.1	MGC125002	NP_001029326.1	ILMN_1349802	0006100022	S	1410	GTGCTGATGGAGGACGCCTCTTTGTGGATGTGAGTTTCCTAGTTAAAACT	5	-	114801027-114801076	5q33	Rattus norvegicus similar to RIKEN cDNA 5830433M19 (MGC125002), mRNA.					
Rattus norvegicus	RefSeq	GI_25742625-S	ILMN_292050	AIFM1	NM_031356.1	NM_031356.1		83533	25742625	NM_031356.1	Aifm1	NP_112646.1	ILMN_1368612	0003140484	S	1730	CCCTGTTGAAGGGGAGGACTACGGCAAAGGTGTCATCTTCTACCTCAGGG	X	-	134869532-134869581	Xq35	Rattus norvegicus apoptosis-inducing factor, mitochondrion-associated 1 (Aifm1), nuclear gene encoding mitochondrial protein, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IPI]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The compaction of chromatin during apoptosis [goid 30263] [evidence IPI]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	Aif	Aif
Rattus norvegicus	RefSeq	GI_62642292-S	ILMN_57466	RGD1565682_PREDICTED	XM_220070.4	XM_220070.4		294097	109460052	XM_220070.4	RGD1565682_predicted	XP_220070.4	ILMN_1364177	0006290044	S	1925	GGGGAAGTCCATCTCTGAACATGCAACACTACAATCAGACCACTCCTCCG	1	-	237642576-237642588:237643210-237643246	1q52	PREDICTED: Rattus norvegicus similar to lipase-like, ab-hydrolase domain containing 2 (predicted) (RGD1565682_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645768-A	ILMN_302327	SLC12A1	NM_019134.1	NM_019134.1		25065	9507102	NM_019134.1	Slc12a1	NP_062007.1	ILMN_1376627	0001050168	S	3925	CTGGGTCAGTGGCCTGATTCTGCTTGGCCTCCTGAGAAGTTTGTGGAGAT	3	+	112534070-112534119	3q36	Rattus norvegicus solute carrier family 12, member 1 (Slc12a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + K+(out) + Cl-(out) = Na+(in) + K+(in) + Cl-(in) [goid 8511] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Nkcc2; MGC93479	Nkcc2; MGC93479
Rattus norvegicus	RefSeq	GI_13591899-S	ILMN_270661	ABAT	NM_031003.1	NM_031003.1		81632	13591899	NM_031003.1	Abat	NP_112265.1	ILMN_1352233	0004010156	S	1481	AAGGTGTGGTACTGGGGGGCTGCGGTGACAAATCCATACGTTTCCGTCCC	10	-	7040919-7040967:7043779-7043779	10q12	Rattus norvegicus 4-aminobutyrate aminotransferase (Abat), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A homodimeric protein complex that possesses 4-aminobutyrate transaminase activity [goid 32144] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; The act of sexual union between male and female, involving the transfer of sperm [goid 7620] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms [goid 9450] [evidence IC ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42135] [evidence IC ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]	Catalysis of the reaction: 4-aminobutanoate + amino group acceptor = succinate semialdehyde + amino acid [goid 3867] [evidence ISS]; Catalysis of the reaction: 4-aminobutanoate + amino group acceptor = succinate semialdehyde + amino acid [goid 3867] [evidence IDA]; Catalysis of the reaction: 4-aminobutanoate + amino group acceptor = succinate semialdehyde + amino acid [goid 3867] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with succinate-semialdehyde dehydrogenase [goid 32145] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Catalysis of the reaction: 2-oxoglutarate + (S)-3-amino-2-methylpropanoate = L-glutamate + methylmalonate-semialdehyde [goid 47298] [evidence IEA]	MGC93392; Gabat; beta-AlaAT	MGC93392; Gabat; beta-AlaAT
Rattus norvegicus	RefSeq	GI_62653348-S	ILMN_273960	RGD1561444_PREDICTED	XM_001077807.1	XM_001077807.1		315473	109484390	XM_001077807.1	RGD1561444_predicted	XP_001077807.1	ILMN_1361707	0005690100	S	2070	TCACAGCCGGTACATGGAGCACTTGGAGAAGATCATGGAGGTGAACGAGC				8q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9530077C05 (predicted) (RGD1561444_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661334-S	ILMN_52998	RGD1566185_PREDICTED	XM_573760.2	XM_573760.2		498497	109501577	XM_573760.2	RGD1566185_predicted	XP_573760.1	ILMN_1367617	0005390471	S	449	CTGACAACTCAGGCTATGTGAGTGGCTACAAGGGGGCTGGCACCTATGAC	15	+	27354042-27354091	15p14	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 8 (predicted) (RGD1566185_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663261-S	ILMN_274012	THOC3_PREDICTED	XM_001068440.1	XM_001068440.1		290519	109505436	XM_001068440.1	Thoc3_predicted	XP_001068440.1	ILMN_1364764	0000510487	S	1131	ACTATTCAGGCTTCCTAATGACTGGACCTGACGGGGAGAGGGGGCTGGGC				17p14	PREDICTED: Rattus norvegicus THO complex 3 (predicted) (Thoc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56912230-A	ILMN_295758	KRT33A	NM_001008757.1	NM_001008757.1		303527	56912230	NM_001008757.1	Krt33a	NP_001008757.1	ILMN_1376797	0000940673	S	1117	GCCACAACCAATGCATGTGATAAGCCCATCGGGCCCTGTGTCTCTAACCC	10	-	88941347-88941396	10q32.1	Rattus norvegicus keratin 33A (Krt33a), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ka27	Ka27
Rattus norvegicus	RefSeq	GI_62639834-S	ILMN_284860	TUBGCP5_PREDICTED	XM_001053658.1	XM_001053658.1		308663	109462029	XM_001053658.1	Tubgcp5_predicted	XP_001053658.1	ILMN_1356007	0000770736	S	3396	TGTGCATACCCGGTGCTCAGAGGCAATAAAAGGGTGTCAGATACCTCCTC				1q22	PREDICTED: Rattus norvegicus tubulin, gamma complex associated protein 5 (predicted) (Tubgcp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576224-S	ILMN_273956	OLR1328	NM_001000599.1	NM_001000599.1		367067	47576224	NM_001000599.1	Olr1328	NP_001000599.1	ILMN_1358031	0003840341	S	275	TCTCCTACCCTGAATGCATGACCCAGCTCTACTGCTTCCTTGTTTTTGCA	8	+	42854848-42854897	8q22	Rattus norvegicus olfactory receptor 1328 (Olr1328), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1328	Olr1328
Rattus norvegicus	RefSeq	GI_47576168-S	ILMN_283150	OLR1366	NM_001000980.1	NM_001000980.1		405335	47576168	NM_001000980.1	Olr1366	NP_001000980.1	ILMN_1364974	0001940722	S	781	TTCTCCTCTTCATCCCCTCACTCAGCTGGGAGGGACATGGCAGGTGCCAT	10	-	12334325-12334374	10q12	Rattus norvegicus olfactory receptor 1366 (Olr1366), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	tpcr13	tpcr13
Rattus norvegicus	RefSeq	GI_27675325	ILMN_69754	LOC292565	XM_238077.1	XM_238077.1		292565	27675325	XM_238077.1	LOC292565	XP_238077.1	ILMN_1650379	0000060692	S	401	GAAGACTCACCAAGAGGGACACTCTGAACCCCCTTAGATCTGCTGGGCTC					PREDICTED: Rattus norvegicus hypothetical LOC292565 (LOC292565), mRNA.					
Rattus norvegicus	RefSeq	GI_62652443-S	ILMN_69512	ZHX2	XM_235318.3	XM_235318.3		314988	109480792	XM_235318.3	Zhx2	XP_235318.1	ILMN_1354602	0006840215	S	2957	CAGGGCAGCGAGGAAAACGAGGAGTCAGGCATCGTGGACTTTGTGGAGGT	7	+	94530769-94530818	7q32	PREDICTED: Rattus norvegicus zinc fingers and homeoboxes 2 (Zhx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 6402] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes [goid 6402] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658287-S	ILMN_292215	MRPL40	XM_001061518.1	XM_001061518.1		287962	109494701	XM_001061518.1	Mrpl40	XP_001061518.1	ILMN_1363700	0002360471	S	737	CTGAAAACTGCTATCCTCAGAACATGCTGGCCCTAGGAGTCTGGACAAGC					PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L40 (Mrpl40), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes [goid 5761] [evidence IDA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62649981-S	ILMN_57586	RGD1565452_PREDICTED	XM_575946.2	XM_575946.2		500578	109475775	XM_575946.2	RGD1565452_predicted	XP_575946.1	ILMN_1364007	0005890594	S	550	TACCCGGAAAGCAGGGACCAGGAGCAGAACCCAAGGCTGAGCATCTCTCT	5	-	160939655-160939704	5q36	PREDICTED: Rattus norvegicus similar to BC003277 protein (predicted) (RGD1565452_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527203-S	ILMN_288258	ETFA	NM_001009668.1	NM_001009668.1		300726	57527203	NM_001009668.1	Etfa	NP_001009668.1	ILMN_1365910	0004610576	S	922	GGAGCCATCCAGCATTTAGCTGGGATGAAGGACAGCAAGACAATTGTGGC	8	-	59019976-59019987:59023018-59023055	8q24	Rattus norvegicus electron-transfer-flavoprotein, alpha polypeptide (Etfa), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence NAS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	ETF	ETF
Rattus norvegicus	RefSeq	GI_62667158	ILMN_69547	LOC501611	XM_577010.1	XM_577010.1		501611	62667158	XM_577010.1	LOC501611	XP_577010.1	ILMN_1650509	0002640524	S	791	GCCAATTCCCATCATAGGGTGTATAGCAACAAGGCATAACAAGGAAGCAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501611), mRNA.					
Rattus norvegicus	RefSeq	GI_62664184-S	ILMN_69019	EPB4.1L4A_PREDICTED	XM_226060.4	XM_226060.4		307514	109506422	XM_226060.4	Epb4.1l4a_predicted	XP_226060.4	ILMN_1366365	0006290551	S	2267	GACCATCCAACTGTGTTTCTCACCTCTCCACCACAGCCAAGACCAGAGGC	18	-	26270179-26270228	18p12	PREDICTED: Rattus norvegicus erythrocyte protein band 4.1-like 4a (predicted) (Epb4.1l4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638295-S	ILMN_269505	RGD1311012_PREDICTED	XM_001069146.1	XM_001069146.1		365038	109460438	XM_001069146.1	RGD1311012_predicted	XP_001069146.1	ILMN_1351019	0004280601	S	692	GATAAGCTGGTCCGCGATGGCATTCACCTGAGCAAACCCCCATACTCGCG				1p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E130306M17 gene (predicted) (RGD1311012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654898-S	ILMN_57857	LOC503251	XM_578784.1	XM_578784.1		503251	62654898	XM_578784.1	LOC503251	XP_578784.1	ILMN_1360668	0002230368	S	288	CCCTCAAGTCTCTCCCGGAACCAGACCCCACGAATCTCTAACACCTGCTT				9q21	PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P1 (LOC503251), mRNA.					
Rattus norvegicus	RefSeq	GI_62648251-S	ILMN_293994	BCL2L14	NM_001024338.1	NM_001024338.1		500348	66730462	NM_001024338.1	Bcl2l14	NP_001019509.1	ILMN_1362720	0003840348	S	1502	AGCTACACTGGAGGAAGCGTCTGGCATGGATCTGTTGGTCTCATGGAGGT	4	+	171325274-171325323	4q43	Rattus norvegicus Bcl2-like 14 (apoptosis facilitator) (Bcl2l14), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 43229] [evidence ISS]	Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642831-S	ILMN_63192	GTF2H2_PREDICTED	XM_215466.4	XM_215466.4		294693	109464287	XM_215466.4	Gtf2h2_predicted	XP_215466.2	ILMN_1350152	0003290673	S	902	CACTGAACCAGGGCTTACATTGGGAGGCTATTTCTGCCCACAGTGTCGAG	2	-	31292426-31292475	2q12	PREDICTED: Rattus norvegicus general transcription factor II H, polypeptide 2 (predicted) (Gtf2h2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758509-S	ILMN_268776	DNAJC14	NM_053690.1	NM_053690.1		114481	16758509	NM_053690.1	Dnajc14	NP_446142.1	ILMN_1356152	0001940181	S	2283	TCTTCAGTCAATGTCAGGGAGTCAAAAGGGCTGTGTACAGCGCAGGATGG	7	+	2116592-2116641	7q11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 14 (Dnajc14), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IDA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with a dopamine receptor [goid 50780] [evidence IDA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC93289; Drip78	MGC93289; Drip78
Rattus norvegicus	RefSeq	GI_62660117-S	ILMN_48488	KLHL8_PREDICTED	XM_213995.3	XM_213995.3		289457	62660117	XM_213995.3	Klhl8_predicted	XP_213995.3	ILMN_1363186	0006180193	S	2443	GTGATGACCGTGGCTTGGCATGAGTGCAGCGTCCAGTGAAAAGACTGAGA				14p22	PREDICTED: Rattus norvegicus kelch-like 8 (Drosophila) (predicted) (Klhl8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663192-S	ILMN_68404	LOC498700	XM_579854.1	XM_579854.1		498700	62663192	XM_579854.1	LOC498700	XP_579854.1	ILMN_1356130	0000780040	S	234	AATTTAAAAGAGGCCAGGGTGGGCGGAGGGAAGCTGTGGGGAGATCGCAG					PREDICTED: Rattus norvegicus LOC498700 (LOC498700), mRNA.					
Rattus norvegicus	RefSeq	GI_62649827-S	ILMN_49602	LOC313615	XM_233551.2	XM_233551.2		313615	62649827	XM_233551.2	LOC313615	XP_233551.1	ILMN_1350500	0003120438	S	1007	GCGGCGCAAACTCCATCAGAAGACCAAGTGAAAGCGAGTGGGTGGGAGCT				5q36	PREDICTED: Rattus norvegicus similar to membrane progestin receptor alpha (LOC313615), mRNA.					
Rattus norvegicus	RefSeq	GI_62643191-S	ILMN_58466	RGD1564227_PREDICTED	XM_226907.4	XM_226907.4		310200	109464563	XM_226907.4	RGD1564227_predicted	XP_226907.4	ILMN_1362068	0007000010	S	1414	TTCCAGCCAGAGCGCGCAGCGTCCAAGGGCAACACCAAGGACAGCATCTA	2	-	83370087-83370136	2q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730557B15 (predicted) (RGD1564227_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651557-S	ILMN_69865	LOC503099	XM_578619.1	XM_578619.1		503099	62651557	XM_578619.1	LOC503099	XP_578619.1	ILMN_1367462	0002190315	S	21	CTCCAGACTGATTTCCAGAATGGTGTTCACTCTGAGGTAAAGCTGCAGCA				6q33	PREDICTED: Rattus norvegicus similar to J558 Ig variable region (LOC503099), mRNA.					
Rattus norvegicus	RefSeq	GI_62651330-S	ILMN_58219	LOC500732	XM_576111.1	XM_576111.1		500732	62651330	XM_576111.1	LOC500732	XP_576111.1	ILMN_1355960	0003610010	S	396	CTGTGTGACTAATGTTGGATGGACTTCAGTGTTACATCCTAGCGGTCCTG					PREDICTED: Rattus norvegicus similar to gamma-2a immunoglobulin heavy chain (LOC500732), mRNA.					
Rattus norvegicus	RefSeq	GI_6981137-I	ILMN_48560	KNG1	NM_012696.2	NM_012696.2		24903	80861400	NM_012696.2	Kng1	NP_036828.2	ILMN_1375567	0005080048	S	1486	AAGGGCAGGCCCAGCACCTGACCATCAGGCAGAAGCTTCAACCGTGACAT	11	+	80131725-80131774	11q23	Rattus norvegicus kininogen 1 (Kng1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence IDA]; Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins [goid 52548] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI];  [goid 4869] [evidence IEA];  [goid 4869] [evidence IDA];  [goid 4869] [evidence IEA]	RATKINKH; KINKH; Tkg; Kng; Kngt; Kngk; TKG6; MGC93589; KINKG; KINT1G; RATTKG6; RATKINT1G; Kngt1; RATKINKG	RATKINKH; KINKH; Tkg; Kng; Kngt; Kngk; TKG6; MGC93589; KINKG; KINT1G; RATTKG6; RATKINT1G; Kngt1; RATKINKG
Rattus norvegicus	RefSeq	GI_6981137-A	ILMN_48560	KNG1	NM_012696.2	NM_012696.2		24903	80861400	NM_012696.2	Kng1	NP_036828.2	ILMN_1376496	0007000601	S	838	CTACTCCATTGTGCAAACAAATTGTTCAAAGGAGGATTTTCCTTCCCTCC	11	+	80121275-80121324	11q23	Rattus norvegicus kininogen 1 (Kng1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence IDA]; Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins [goid 52548] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI];  [goid 4869] [evidence IEA];  [goid 4869] [evidence IDA];  [goid 4869] [evidence IEA]	RATKINKH; KINKH; Tkg; Kng; Kngt; Kngk; TKG6; MGC93589; KINKG; KINT1G; RATTKG6; RATKINT1G; Kngt1; RATKINKG	RATKINKH; KINKH; Tkg; Kng; Kngt; Kngk; TKG6; MGC93589; KINKG; KINT1G; RATTKG6; RATKINT1G; Kngt1; RATKINKG
Rattus norvegicus	RefSeq	GI_62666999-S	ILMN_296460	RGD1563554_PREDICTED	XM_001063417.1	XM_001063417.1		317272	109511923	XM_001063417.1	RGD1563554_predicted	XP_001063417.1	ILMN_1361080	0003390315	S	1479	CCATGCAATTCTTGATCCAGAAAATATGCGTGTCACAACTAAGGGGCATG				Xq22	PREDICTED: Rattus norvegicus similar to MGC79482 protein (predicted) (RGD1563554_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649635-S	ILMN_62494	RGD1305090_PREDICTED	XM_342916.3	XM_342916.3		362598	109475502	XM_342916.3	RGD1305090_predicted	XP_342917.3	ILMN_1352466	0005700687	S	1953	GCTGAAGCTGGAACAGAAGATGGGGGAGGTCTGGAAGGAGCTGAAGACGG	5	-	145505764-145505802:145505885-145505895	5q36	PREDICTED: Rattus norvegicus similar to CD2-associated protein (predicted) (RGD1305090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654226-S	ILMN_69266	LOC315979	XM_236593.3	XM_236593.3		315979	62654226	XM_236593.3	LOC315979	XP_236593.3	ILMN_1351126	0002940138	S	7948	GAAGTGGCAGGGCTGCTCTTTCAAGTCATTCCAGAAGCACACGCTACTCC				8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E330026B02 (predicted) (LOC315979), mRNA.					
Rattus norvegicus	RefSeq	GI_62652744-S	ILMN_288882	APOBEC3F	NM_001033703.1	NM_001033703.1		315137	76096345	NM_001033703.1	Apobec3f	NP_001028875.1	ILMN_1353663	0004280280	S	1637	TGGCCTACATAGTGGGCTCTAGGACAGCCAGAACTACACAGAGGGACCCT	7	+	118140572-118140621	7q34	Rattus norvegicus apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F (Apobec3f), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication [goid 2230] [evidence ISS]; The synthesis of DNA on a template of RNA [goid 6410] [evidence ISS]; Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s) [goid 16553] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of retroviral genome replication [goid 45869] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the viral life cycle, the set of processes by which a virus reproduces and spreads among hosts [goid 48525] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2 [goid 16814] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124783	MGC124783
Rattus norvegicus	RefSeq	GI_62645215-S	ILMN_70367	LOC502632	XM_578126.1	XM_578126.1		502632	62645215	XM_578126.1	LOC502632	XP_578126.1	ILMN_1349883	0000670735	S	286	GCGCGTCAGCACTTCCGGCGTTGCGGAGCCCAAACTTTAATGAGAAAACG				3q21	PREDICTED: Rattus norvegicus similar to 2810410A08Rik protein (LOC502632), mRNA.					
Rattus norvegicus	RefSeq	GI_62651631-S	ILMN_51447	BAZ2A_PREDICTED	XM_222315.4	XM_222315.4		304601	109480122	XM_222315.4	Baz2a_predicted	XP_222315.4	ILMN_1371822	0001690390	S	327	TGATGCAGCCTGGCCTTTCCTAGAACCTGTGAACCCCCGCTTGGTGAGTG	7	+	1420241-1420290	7q11	PREDICTED: Rattus norvegicus bromodomain adjacent to zinc finger domain, 2A (predicted) (Baz2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742716	ILMN_271029	DYX1C1	NM_001007010.1	NM_001007010.1		363096	55742716	NM_001007010.1	Dyx1c1	NP_001007011.1	ILMN_1530380	0000510451	S	519	AATAGAAGATATGAAAGAAAATGAACGGAAAAAAGCAACCAGAGAATTAG	8	+	77704756-77704805	8q24	Rattus norvegicus dyslexia susceptibility 1 candidate 1 homolog (human) (Dyx1c1), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94521; Ekn1; Edem2	MGC94521; Ekn1; Edem2
Rattus norvegicus	RefSeq	GI_62653438-A	ILMN_271029	DYX1C1	NM_001007010.1	NM_001007010.1		363096	55742716	NM_001007010.1	Dyx1c1	NP_001007011.1	ILMN_1376639	0000450368	S	1635	TCTGAACCGCCTGTGCCTGTCCTTGGAATTAAGCTGTTGGCATTTCCAGG	8	+	77715183-77715232	8q24	Rattus norvegicus dyslexia susceptibility 1 candidate 1 homolog (human) (Dyx1c1), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94521; Ekn1; Edem2	MGC94521; Ekn1; Edem2
Rattus norvegicus	RefSeq	GI_62650349-S	ILMN_269712	BIRC6_PREDICTED	XM_001065439.1	XM_001065439.1		313876	109478991	XM_001065439.1	Birc6_predicted	XP_001065439.1	ILMN_1363432	0005890592	S	15055	GCTGCATTGATGTGGATTTCGTAGACACACAGGCTTCGAAGCACAAGCCA				6q12	PREDICTED: Rattus norvegicus baculoviral IAP repeat-containing 6 (predicted) (Birc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576116-S	ILMN_302085	OLR1391	NM_001001089.1	NM_001001089.1		405983	47576116	NM_001001089.1	Olr1391	NP_001001089.1	ILMN_1358289	0000840528	S	881	AGGATGTGAAGGGGGCTCTTTGGAAGGTCTTGGGAAAAGCACAGACTTAG	10	+	34819620-34819669	10q21	Rattus norvegicus olfactory receptor 1391 (Olr1391), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1391	Olr1391
Rattus norvegicus	RefSeq	GI_62718564-S	ILMN_68629	LOC503367	XM_578906.1	XM_578906.1		503367	62718564	XM_578906.1	LOC503367	XP_578906.1	ILMN_1372983	0004850441	S	2	GGCTCGGCCATTTAACTCTGACATAAGCACCTTTCATAATTTCGTTGGTG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503367), mRNA.					
Rattus norvegicus	RefSeq	GI_62649112-S	ILMN_298117	EGFL5_PREDICTED	XM_001066182.1	XM_001066182.1		313270	109476644	XM_001066182.1	Egfl5_predicted	XP_001066182.1	ILMN_1367211	0001940136	S	848	CACCTGCAAAGAGGGCTTTTACCTGAATCACACTGTTGGTCTCTGCCTGC				5q31	PREDICTED: Rattus norvegicus EGF-like-domain, multiple 5 (predicted) (Egfl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645725-S	ILMN_49921	LOC502652	XM_578146.1	XM_578146.1		502652	62645725	XM_578146.1	LOC502652	XP_578146.1	ILMN_1372635	0005420110	S	297	TCCTTGTGTGGAGGGAGCACTGGGGAAGAGCCACAGGTCATCGTCTGGAT					PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC502652), mRNA.					
Rattus norvegicus	RefSeq	GI_42476132-S	ILMN_282423	PTGIS	NM_031557.2	NM_031557.2		25527	42476132	NM_031557.2	Ptgis	NP_113745.1	ILMN_1361790	0005290132	S	1641	ATGCTGTGTCCAGAGGAGGGGACAGTGAGAACACCGAGAGCAGGAAAAGC				3q42	Rattus norvegicus prostaglandin I2 (prostacyclin) synthase (Ptgis), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence TAS]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IDA]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-6,9-alpha-epoxy-11-alpha,15-dihydroxyprosta-5,13-dienoate [goid 8116] [evidence ISS]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-6,9-alpha-epoxy-11-alpha,15-dihydroxyprosta-5,13-dienoate [goid 8116] [evidence IMP]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-6,9-alpha-epoxy-11-alpha,15-dihydroxyprosta-5,13-dienoate [goid 8116] [evidence IDA]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-6,9-alpha-epoxy-11-alpha,15-dihydroxyprosta-5,13-dienoate [goid 8116] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	PGIS	PGIS
Rattus norvegicus	RefSeq	GI_62643910-S	ILMN_48452	LOC362000	XM_347017.2	XM_347017.2		362000	62643910	XM_347017.2	LOC362000	XP_347018.1	ILMN_1352714	0006110022	S	314	TGTCACCGCGAGCATCCAAGCGCAGAAAGGAAATGCGAAGCGAGACAGCT					PREDICTED: Rattus norvegicus hypothetical LOC362000 (LOC362000), mRNA.					
Rattus norvegicus	RefSeq	GI_62656349-S	ILMN_61806	RGD1305687_PREDICTED	XM_237786.4	XM_237786.4		287453	109488400	XM_237786.4	RGD1305687_predicted	XP_237786.2	ILMN_1373564	0002060136	S	477	AGTCCATCTGTTCCACTCATCTGGTGTCCTTTGGGACTGTTACCCTGGCG	10	-	57077339-57077388	10q24	PREDICTED: Rattus norvegicus similar to D11Bwg0434e protein (predicted) (RGD1305687_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078590-S	ILMN_283409	RGD1311249	NM_001013931.1	NM_001013931.1		298201	62078590	NM_001013931.1	RGD1311249	NP_001013953.1	ILMN_1361467	0002340594	S	2129	CCAGAGCTACCCTGAGATTGTCCCAAGTTCCCAGGCAAGTAACGCCAGCG	5	-	59523901-59523950	5q22	Rattus norvegicus similar to RIKEN cDNA B230312A22 (RGD1311249), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62648411-S	ILMN_274258	RGD1565140_PREDICTED	XM_001067977.1	XM_001067977.1		502902	109474325	XM_001067977.1	RGD1565140_predicted	XP_001067977.1	ILMN_1349895	0002640440	S	662	GTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTACCCCCAACTCG				4q42	PREDICTED: Rattus norvegicus similar to Clecsf12 protein (predicted) (RGD1565140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576918-S	ILMN_271112	OLR239	NM_001000211.1	NM_001000211.1		293383	47576918	NM_001000211.1	Olr239	NP_001000211.1	ILMN_1349878	0003170022	S	93	CCTGGGTGTCTATCTCACCACCGTATTGGGCAATGCCAGCATAATTATGT	1	-	165264343-165264392	1q33	Rattus norvegicus olfactory receptor 239 (Olr239), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr239	Olr239
Rattus norvegicus	RefSeq	GI_54020663-S	ILMN_262846	DCN	NM_024129.1	NM_024129.1		29139	54020663	NM_024129.1	Dcn	NP_077043.1	ILMN_1351656	0005420121	S	1063	CCTTCAGATGTGTCTTCGGGCGCTCTACCATTCAACTTGGGAACTACAAG	7	+	35044636-35044685	7q13	Rattus norvegicus decorin (Dcn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IDA]	MGC94682	MGC94682
Rattus norvegicus	RefSeq	GI_62666345-S	ILMN_69896	LOC309860	XM_228309.3	XM_228309.3		309860	62666345	XM_228309.3	LOC309860	XP_228309.3	ILMN_1370125	0000360452	S	5236	TGGCCAGGACTCCCCAGTACGCCTTTCTCAGATATCCAGGTCCTCAGGTC				20q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5330439J01 (LOC309860), mRNA.					
Rattus norvegicus	RefSeq	GI_62657793-S	ILMN_48564	LOC288165	XM_213636.4	XM_213636.4		288165	109493052	XM_213636.4	LOC288165	XP_213636.2	ILMN_1358886	0002030097	S	1939	TTACTGTAATGACTTCCGAGAAGCAGCCTGCGGGTGTACCTGACACGTTC	11	+	45581958-45582007	11q12	PREDICTED: Rattus norvegicus similar to PEST-containing nuclear protein, transcript variant 2 (LOC288165), mRNA.					
Rattus norvegicus	RefSeq	GI_13592114-S	ILMN_67298	THRA	NM_031134.2	NM_031134.2		81812	63079702	NM_031134.2	Thra	NP_112396.2	ILMN_1354266	0005700113	S	2157	CCCAAGCTAGACTGTGTCTGAATCATGTCTGTAGCCCAGTGCCCAGTGCC	10	+	87542210-87542259	10q31	Rattus norvegicus thyroid hormone receptor alpha (Thra), transcript variant TRalpha2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEA]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEA]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEA]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]	Interacting selectively with single-stranded RNA [goid 3727] [evidence IDA]; Combining with thyroid hormone to initiate a change in cell activity [goid 4887] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with thyroid hormone to initiate a change in cell activity [goid 4887] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ERBA1; Thra1	ERBA1; Thra1
Rattus norvegicus	RefSeq	GI_62644960-S	ILMN_286486	RGD1564019_PREDICTED	XM_001078585.1	XM_001078585.1		499783	109469586	XM_001078585.1	RGD1564019_predicted	XP_001078585.1	ILMN_1352069	0003840270	S	2789	CCTCTCCCGCATGGAAATTAAAGAGATAGCAAGCAGGACCCGCAGGGAGC					PREDICTED: Rattus norvegicus similar to GTPase activating RANGAP domain-like 3 (predicted) (RGD1564019_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651809-S	ILMN_264451	LOC691312	XM_001077664.1	XM_001077664.1		691312	109480305	XM_001077664.1	LOC691312	XP_001077664.1	ILMN_1365488	0000770048	S	2001	CCTGAGTGGCAATTAGAAAGTGCGCCACTGTGCCTGTCATATCTGAAGAC	7	+	13170159-13170208	7q11	PREDICTED: Rattus norvegicus similar to Cytochrome P450 4F5 (CYPIVF5) (LOC691312), mRNA.					
Rattus norvegicus	RefSeq	GI_62658955-S	ILMN_57960	LOC360815	XM_573400.1	XM_573400.1		360815	62658955	XM_573400.1	LOC360815	XP_573400.1	ILMN_1353533	0003390725	S	3933	ACTGCTTCACCTGGGGGCAGGAACGACATGGTCCGATTACATCCTCTCCC				12q16	PREDICTED: Rattus norvegicus similar to ATP-dependent RNA-helicase (LOC360815), mRNA.					
Rattus norvegicus	RefSeq	GI_62644292-S	ILMN_68619	LOC499703	XM_575031.1	XM_575031.1		499703	62644292	XM_575031.1	LOC499703	XP_575031.1	ILMN_1356847	0006290390	S	639	CATGCCCAAAACGTGGCAAGCGTGAGAAACAGCTCAATAACAACAGCGGC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499703), mRNA.					
Rattus norvegicus	RefSeq	GI_62666706-S	ILMN_68081	IRS4_PREDICTED	XM_235721.4	XM_235721.4		315350	109510573	XM_235721.4	Irs4_predicted	XP_235721.4	ILMN_1371861	0000360026	S	3886	TTGCCGCAGGCTGGAATCCTGGAACCCTTAACCAAGCTGCCAACGGTGAG	X	+	36884897-36884946	Xq14	PREDICTED: Rattus norvegicus insulin receptor substrate 4 (predicted) (Irs4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651669-S	ILMN_53480	NEUROD4_PREDICTED	XM_222370.4	XM_222370.4		288821	109480161	XM_222370.4	Neurod4_predicted	XP_222370.2	ILMN_1350249	0000870079	S	1326	GGCTCTGCTCCAGTGGTGCCAAAGACTGACTGGATGCTCTGCCCATTAAC	7	-	8536886-8536935	7q11	PREDICTED: Rattus norvegicus neurogenic differentiation 4 (predicted) (Neurod4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639723-S	ILMN_274699	TEAD2_MAPPED	XM_001080702.1	XM_001080702.1		308582	109461913	XM_001080702.1	Tead2_mapped	XP_001080702.1	ILMN_1353500	0006520072	S	1699	GCTCTTCTGGAAAGGGGAGCTCAGCTATGTGGGGCCTCTTACTCATTGCC				1q22	PREDICTED: Rattus norvegicus TEA domain family member 2 (mapped) (Tead2_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_47059192-S	ILMN_286984	PFDN6	NM_212506.1	NM_212506.1		309629	47059192	NM_212506.1	Pfdn6	NP_997671.1	ILMN_1374370	0002810170	S	477	TCGGGACCTCGAAAGGCAGTCAGAGCAACAGAGGGAAACCCTTGCTCAGT	20	+	5099016-5099065	20p12	Rattus norvegicus prefoldin 6 (Pfdn6), mRNA.	A multisubunit chaperone that acts to delivers unfolded proteins to cytosolic chaperonin. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits [goid 16272] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653961-S	ILMN_56219	NPAT_PREDICTED	XM_236292.4	XM_236292.4		315666	109483493	XM_236292.4	Npat_predicted	XP_236292.4	ILMN_1366007	0001340292	S	3955	TGTGGTGAGGAAGGCAGCGTGCCCAGAGCAATGATCCCAGCTGTCACTGC	8	+	57031655-57031704	8q24	PREDICTED: Rattus norvegicus nuclear protein in the AT region (predicted) (Npat_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036656-S	ILMN_265076	P4HA1	NM_172062.2	NM_172062.2		64475	51036656	NM_172062.2	P4ha1	NP_742059.2	ILMN_1368381	0000630575	S	1812	GGCCGTGTACCCTGTCAGAATTGGAATGACAACCAGGCTTCCCGTGGCTC	Un|NW_047852.1	-	177112-177133:177134-177161		Rattus norvegicus procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I (P4ha1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The posttranslational modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase [goid 18401] [evidence TAS]; The posttranslational modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase [goid 18401] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence TAS]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence ISS]; Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2 [goid 4656] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	PHalphaI	PHalphaI
Rattus norvegicus	RefSeq	GI_62644918-S	ILMN_55635	FUBP3_PREDICTED	XM_342409.2	XM_342409.2		362106	62644918	XM_342409.2	Fubp3_predicted	XP_342410.2	ILMN_1364476	0001500647	S	2976	CCGTCTCCATTGCCCAGGGCGGTTGTGTGTCTAAGACCTCCAAGCTGGTT				3p12	PREDICTED: Rattus norvegicus far upstream element (FUSE) binding protein 3 (predicted) (Fubp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657723-S	ILMN_283493	RGD1562078_PREDICTED	XM_001071467.1	XM_001071467.1		501766	109493954	XM_001071467.1	RGD1562078_predicted	XP_001071467.1	ILMN_1357614	0003060358	S	538	GCCTACCCACCTTCATTTTGTGTTCCAACATGCGGGCTATGTCTCTCTGG				11q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310057N15 (predicted) (RGD1562078_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655147-S	ILMN_68730	MDH1B_PREDICTED	XM_237203.4	XM_237203.4		316444	109486193	XM_237203.4	Mdh1b_predicted	XP_237203.4	ILMN_1360897	0006020040	S	866	TAGCCTCGCAAGCAACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAG	9	-	62408897-62408946	9q32	PREDICTED: Rattus norvegicus malate dehydrogenase 1B, NAD (soluble) (predicted) (Mdh1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591998-S	ILMN_268635	MSH2	NM_031058.1	NM_031058.1		81709	13591998	NM_031058.1	Msh2	NP_112320.1	ILMN_1365869	0006650739	S	2783	CACGGGTAAAGGCTCCGTGAGAGGACAGTGGAGCGAAGCCAGTAGGGAGA	6	+	11258270-11258289:11258290-11258319	6q12	Rattus norvegicus mutS homolog 2 (E. coli) (Msh2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A heterodimer involved in the recognition and repair of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MSH2 and MSH6 [goid 32301] [evidence ISS]; A heterodimer involved in the recognition and repair of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MSH2 and MSH6 [goid 32301] [evidence IEA]; A heterodimer involved in the recognition and repair of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MSH2 and MSH6 [goid 32301] [evidence ISS]; A heterodimer involved in binding to and correcting insertion/deletion mutations. In human the complex consists of two subunits, MSH2 and MSH3 [goid 32302] [evidence IEA]; A heterodimer involved in binding to and correcting insertion/deletion mutations. In human the complex consists of two subunits, MSH2 and MSH3 [goid 32302] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process by which immunoglobulin genes are formed through recombination of the germline genetic elements, also known as immunoglobulin gene segments, within a single locus following the induction of an immune response [goid 2204] [evidence ISS]; The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis [goid 6119] [evidence ISS]; The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis [goid 6119] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence ISS]; A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence ISS]; A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence IEA]; A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence ISS]; Pathways for DNA repair which occur after DNA has replicated, e.g. mismatch repair, and which involve translesion synthesis (TLS-type) DNA polymerases [goid 6301] [evidence ISS]; Pathways for DNA repair which occur after DNA has replicated, e.g. mismatch repair, and which involve translesion synthesis (TLS-type) DNA polymerases [goid 6301] [evidence ISS]; Pathways for DNA repair which occur after DNA has replicated, e.g. mismatch repair, and which involve translesion synthesis (TLS-type) DNA polymerases [goid 6301] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence ISS]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins [goid 16446] [evidence ISS]; Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins [goid 16446] [evidence IEA]; The process by which immunoglobulin genes are formed through recombination of the germline genetic elements, as known as immunoglobulin gene segments, within a single locus [goid 16447] [evidence ISS]; Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells [goid 19724] [evidence ISS]; Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells [goid 19724] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IEA]; The slowing of DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progession [goid 31573] [evidence ISS]; The slowing of DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progession [goid 31573] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; Any process involved in sustaining the fidelity and copy number of DNA repeat elements [goid 43570] [evidence ISS]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence ISS]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA recombination [goid 45910] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA recombination [goid 45910] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices [goid 400] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with damaged DNA [goid 3684] [evidence ISS]; Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4422] [evidence ISS]; Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4422] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with centromere-associated DNA, usually characterized by highly repetitive sequences [goid 19237] [evidence ISS]; Interacting selectively with centromere-associated DNA, usually characterized by highly repetitive sequences [goid 19237] [evidence IEA]; Interacting selectively with double-stranded DNA containing one or more mismatches [goid 30983] [evidence ISS]; Interacting selectively with double-stranded DNA containing one or more mismatches [goid 30983] [evidence IEA]; Interacting selectively with double-stranded DNA containing a G/T mispair [goid 32137] [evidence ISS]; Interacting selectively with double-stranded DNA containing a G/T mispair [goid 32137] [evidence IEA]; Interacting selectively with double-stranded DNA containing a G/T mispair [goid 32137] [evidence ISS]; Interacting selectively with double-stranded DNA containing a single guanine insertion or a deletion that results in an unpaired guanine [goid 32142] [evidence ISS]; Interacting selectively with double-stranded DNA containing a single thymine insertion or a deletion that results in an unpaired thymine [goid 32143] [evidence ISS]; Interacting selectively with double-stranded DNA containing a dinucleotide repeat insertion or a deletion resulting in unpaired dinucleotide repeats [goid 32181] [evidence ISS]; Interacting selectively with oxidized purine residues in DNA [goid 32357] [evidence ISS]; Interacting selectively with the mismatch repair complex MutLalpha [goid 32405] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652817-S	ILMN_276861	RGD1560810_PREDICTED	XM_001077542.1	XM_001077542.1		500910	109482629	XM_001077542.1	RGD1560810_predicted	XP_001077542.1	ILMN_1362933	0004810068	S	364	GTCTTTGTACCCCCCTCGGAAACCCTTCATGCCTCAGCTCCTAACTGGCC				7q34	PREDICTED: Rattus norvegicus similar to tumor necrosis factor receptor superfamily, member 13c (predicted) (RGD1560810_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655422-S	ILMN_268648	RGD1307976_PREDICTED	XR_008638.1	XR_008638.1		301624	109487549	XR_008638.1	RGD1307976_predicted		ILMN_1356262	0001230047	S	1336	TCGAGCCAAGCATGTGGTGGGATATGGGCACTTGGGGGATGGCAACCTTC				9q36	PREDICTED: Rattus norvegicus similar to AI325464 protein (predicted) (RGD1307976_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560072-S	ILMN_298005	CD244	NM_022259.1	NM_022259.1		64025	11560072	NM_022259.1	Cd244	NP_071595.1	ILMN_1351010	0001340400	S	1273	GCTCTACCTAAGGGAAGGCTGAGGAGTGAGCGATGCAGAGCAAGAAGTGA	13	+	87531132-87531181	13q24	Rattus norvegicus Cd244 molecule, natural killer cell receptor 2B4 (Cd244), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Nmrk; 2B4	Nmrk; 2B4
Rattus norvegicus	RefSeq	GI_62657961-S	ILMN_276231	RGD1310490_PREDICTED	XM_001071334.1	XM_001071334.1		303903	109494472	XM_001071334.1	RGD1310490_predicted	XP_001071334.1	ILMN_1371666	0003450440	S	5034	CGGAGTTTGGCTCTCTGGCACAGCTCAACAGTAATGGATTTAACCGCAGC				11q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC29390 (predicted) (RGD1310490_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577672-S	ILMN_276512	OLR563	NM_001000666.1	NM_001000666.1		404868	47577672	NM_001000666.1	Olr563	NP_001000666.1	ILMN_1364337	0002680180	S	775	GGATCAGCCACTGTTACATACTCAAGGCCAAAGTCAAGCCACTCTCCAGA	3	+	71097706-71097755	3q24	Rattus norvegicus olfactory receptor 563 (Olr563), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr563	Olr563
Rattus norvegicus	RefSeq	GI_20806126-S	ILMN_268081	IMPG2	NM_139088.1	NM_139088.1		245919	20806126	NM_139088.1	Impg2	NP_620788.1	ILMN_1352532	0006760301	S	4211	ACAGGACCAAGCCAAAAACCTGAAGGCAGACGTTGGAGTTGGGACTGCAG	11	-	45267267-45267316	11q12	Rattus norvegicus interphotoreceptor matrix proteoglycan 2 (Impg2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence ISS]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Pg10.2	Pg10.2
Rattus norvegicus	RefSeq	GI_62643737-S	ILMN_62308	APOA1BP_PREDICTED	XM_215635.4	XM_215635.4		295229	109465020	XM_215635.4	Apoa1bp_predicted	XP_215635.4	ILMN_1366518	0006370458	S	568	GCCATCTTCGGCTTCAGTTTCAAGGGCGATGTTCGGGAGCCGTTCCACAG	2	-	180133079-180133128	2q34	PREDICTED: Rattus norvegicus apolipoprotein A-I binding protein (predicted) (Apoa1bp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424263-S	ILMN_269443	LNPEP	NM_133574.1	NM_133574.1		171105	19424263	NM_133574.1	Lnpep	NP_598258.1	ILMN_1355198	0004210139	S	2891	ACTCCCTCCTGATTTGGACATTGTGGTGTGAAGTGTCCATGAGCCAGGAC	1	-	56072016-56072065	1q12	Rattus norvegicus leucyl/cystinyl aminopeptidase (Lnpep), transcript variant 2, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 43229] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; The process of renal sodium excretion [goid 30147] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]	Combining with angiotensin to initiate a change in cell activity [goid 1595] [evidence IMP]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IMP]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	IRAP; P-LAP; Vp165	IRAP; P-LAP; Vp165
Rattus norvegicus	RefSeq	GI_62649351-S	ILMN_70205	LOC502970	XM_578476.1	XM_578476.1		502970	62649351	XM_578476.1	LOC502970	XP_578476.1	ILMN_1358053	0002340097	S	1237	ACAAACCCAGAGCCAAATCCAAACCAGAGCGGAGAAGAGGGATCTCCTGG				5q33	PREDICTED: Rattus norvegicus similar to angiopoietin-related protein 3 (LOC502970), mRNA.					
Rattus norvegicus	RefSeq	GI_15375319-S	ILMN_278574	HAGH	NM_033349.1	NM_033349.1		24439	15375319	NM_033349.1	Hagh	NP_203500.1	ILMN_1353517	0000580575	S	717	CGACCCTGTGACCACCATGAGGGCCATCCGCAGGGAGAAAGACCAGTTTA	10	+	14117393-14117442	10q12	Rattus norvegicus hydroxyacyl glutathione hydrolase (Hagh), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]	Catalysis of the reaction: (S)-(2-hydroxyacyl)glutathione + H2O = glutathione + a 2-hydroxy carboxylate [goid 4416] [evidence IEA]; Catalysis of the reaction: (S)-(2-hydroxyacyl)glutathione + H2O = glutathione + a 2-hydroxy carboxylate [goid 4416] [evidence ISS]; Catalysis of the reaction: (S)-(2-hydroxyacyl)glutathione + H2O = glutathione + a 2-hydroxy carboxylate [goid 4416] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RSP29; Glo2	RSP29; Glo2
Rattus norvegicus	RefSeq	GI_6981059-S	ILMN_279479	HTR4	NM_012853.1	NM_012853.1		25324	6981059	NM_012853.1	Htr4	NP_036985.1	ILMN_1366668	0001050148	S	995	CATCCTCTGCTGTGATGATGAGCGCTACAAAAGACCCCCCATTCTGGGCC	18	+	58445710-58445759	18q12.1	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 4 (Htr4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IMP]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IMP]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence ISS]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653114-S	ILMN_57948	LOC500936	XM_580137.1	XM_580137.1		500936	62653114	XM_580137.1	LOC500936	XP_580137.1	ILMN_1368595	0004070161	S	1025	GGTGGGTGCTCAGACATCAGAATGTGGATATGGGGCTGGTGGGGAGAGTA					PREDICTED: Rattus norvegicus LOC500936 (LOC500936), mRNA.					
Rattus norvegicus	RefSeq	GI_6981483-S	ILMN_293539	RPL39	NM_012875.1	NM_012875.1		25347	6981483	NM_012875.1	Rpl39	NP_037007.1	ILMN_1366154	0002360021	S	181	GGAGTCACACTACGGCCAGACTGAGGATTTCTACTGAATCACCGTCATCG	X	+	7827792-7827792:7827793-7827841	Xq12	Rattus norvegicus ribosomal protein L39 (Rpl39), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576158-S	ILMN_274113	OLR98	NM_001000143.1	NM_001000143.1		293240	47576158	NM_001000143.1	Olr98	NP_001000143.1	ILMN_1356894	0002680601	S	318	GCTTTGCATCTTTGAGTCAGCCATCCTGGTGGCCATGGCCTTTGATCGCT	1	+	161149639-161149688	1q32	Rattus norvegicus olfactory receptor 98 (Olr98), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr98	Olr98
Rattus norvegicus	RefSeq	GI_62718457-S	ILMN_61249	LOC501401	XM_576814.1	XM_576814.1		501401	62718457	XM_576814.1	LOC501401	XP_576814.1	ILMN_1362240	0006590471	S	2920	CCACCTCACACCAGTTAGAATGGCTAAGATCACAAACTCAGGTGACAGCA					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC501401), mRNA.					
Rattus norvegicus	RefSeq	GI_62663060-S	ILMN_48406	LOC498675	XM_573957.2	XM_573957.2		498675	109503660	XM_573957.2	LOC498675	XP_573957.1	ILMN_1362939	0005220047	S	597	AGCCTGGGCCCTGCTTGTGGATGAGAGTCCGCAGAAGGCTTTGGATTCTG	16|NW_047483.1	+	171487-171536		PREDICTED: Rattus norvegicus hypothetical LOC498675 (LOC498675), mRNA.					
Rattus norvegicus	RefSeq	GI_62644025-S	ILMN_55264	LOC502581	XM_578067.1	XM_578067.1		502581	62644025	XM_578067.1	LOC502581	XP_578067.1	ILMN_1351153	0005290253	S	579	GCCCCGGGCCATCGAGTCAGTACAGTCACCCCCTCGGTGGAGAACAAGAA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC502581), mRNA.					
Rattus norvegicus	RefSeq	GI_62649706-S	ILMN_272498	FNDC5	XM_001060505.1	XM_001060505.1		260327	109477290	XM_001060505.1	Fndc5	XP_001060505.1	ILMN_1357754	0002510731	S	540	CAAGGAAAAAACCAAGAGTGCATCAGAGACCAGCACCCCAGAGCACCAGG					PREDICTED: Rattus norvegicus fibronectin type III domain containing 5 (Fndc5), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659978-S	ILMN_266825	HHAT_PREDICTED	XR_008636.1	XR_008636.1		289344	109499307	XR_008636.1	Hhat_predicted		ILMN_1355912	0002190139	S	1518	GGTGACCCTGTCTGTCCTGGGATTCCTGTACTGCTATTCACACGTGGGCA				13q27	PREDICTED: Rattus norvegicus hedgehog acyltransferase (predicted) (Hhat_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56912238-A	ILMN_279911	KRT12	NM_001008761.1	NM_001008761.1		360625	56912238	NM_001008761.1	Krt12	NP_001008761.1	ILMN_1376425	0000730131	S	1299	GACAGTCGTGCAGGAGATAGTGAATGGCGAAGTGGTCTCATCCCAGGTTC	10	-	88321148-88321197	10q32.1	Rattus norvegicus keratin 12 (Krt12), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Krt12; Ka12	Krt12; Ka12
Rattus norvegicus	RefSeq	GI_62638622-S	ILMN_58818	LOC502245	XM_344844.2	XM_344844.2		502245	62638622	XM_344844.2	LOC502245	XP_344845.2	ILMN_1374885	0002690520	S	561	GGAATTCCCAAAATCCCCTCTGGGGCAGTTGCCAGTGTTCTCTACTTCAG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502245), mRNA.					
Rattus norvegicus	RefSeq	GI_62647350-S	ILMN_62853	PPM1K_PREDICTED	XM_231833.4	XM_231833.4		312381	109472114	XM_231833.4	Ppm1k_predicted	XP_231833.2	ILMN_1366955	0000060546	S	939	CAACCAGTGCCACGATCCTAAAGAAGCAGCTCATGCTGTGACTGAGCAGG	4	+	87385593-87385641:87388876-87388876	4q24	PREDICTED: Rattus norvegicus protein phosphatase 1K (PP2C domain containing) (predicted) (Ppm1k_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660927-S	ILMN_273831	VRK2_PREDICTED	XM_001064313.1	XM_001064313.1		360991	109501118	XM_001064313.1	Vrk2_predicted	XP_001064313.1	ILMN_1352737	0007050735	S	1439	TCTGTGGAGAGACAAGAGCAACATGGAGAGAGGAGCAGGAAGAGCGCCGG				14q22	PREDICTED: Rattus norvegicus vaccinia related kinase 2 (predicted) (Vrk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655655-S	ILMN_64733	PMM2_PREDICTED	XM_220141.3	XM_220141.3		302915	62655655	XM_220141.3	Pmm2_predicted	XP_220141.3	ILMN_1354139	0000770397	S	1858	CCTTGCTGGTGGGATGGTGTGGCTGCCCAGGTCCAAGGATGACAACTACT				10q12	PREDICTED: Rattus norvegicus phosphomannomutase 2 (predicted) (Pmm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655321-S	ILMN_57229	LOC367305	XM_346067.2	XM_346067.2		367305	62655321	XM_346067.2	LOC367305	XP_346068.2	ILMN_1357823	0001240181	S	252	GGACTGATGTGGAACAACACTGCAGAGGATGACAAGGAAGTGGTCAAGGC					PREDICTED: Rattus norvegicus similar to MGC52578 protein (LOC367305), mRNA.					
Rattus norvegicus	RefSeq	GI_62645576-S	ILMN_65585	GPR176	XM_342493.3	XM_342493.3		117257	109468650	XM_342493.3	Gpr176	XP_342494.3	ILMN_1367397	0000770647	S	3675	GGGGCGCCTTCCTTTCTGTGCACTGCCTCACAGACTTGTTTTCTCACGTC	3	-	104700238-104700287	3q35	PREDICTED: Rattus norvegicus G protein-coupled receptor 176 (Gpr176), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576534-S	ILMN_282806	OLR1631	NM_001000837.1	NM_001000837.1		405126	47576534	NM_001000837.1	Olr1631	NP_001000837.1	ILMN_1371029	0002450504	S	573	GGACCCATTGATGGCTTTGTCCTGTGCCCCAGCACCTATTACCAAACTTG	15	-	26595170-26595219	15p14	Rattus norvegicus olfactory receptor 1631 (Olr1631), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1631	Olr1631
Rattus norvegicus	RefSeq	GI_62651202-S	ILMN_266156	GLRX5_PREDICTED	XM_001069239.1	XM_001069239.1		362776	109479887	XM_001069239.1	Glrx5_predicted	XP_001069239.1	ILMN_1353148	0002190576	S	903	GCGGGCAGGGTGCTTTTACTTTAGTCTTTGGCTCAGAATCCCCTCTGGTG				6q32	PREDICTED: Rattus norvegicus glutaredoxin 5 homolog (S. cerevisiae) (predicted) (Glrx5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981661-S	ILMN_49093	TNF	NM_012675.1	NM_012675.1		24835	6981661	NM_012675.1	Tnf	NP_036807.1	ILMN_1357947	0006130180	S	483	GCCATTTCATACCAGGAGAAAGTCAGCCTCCTCTCTGCCATCAAGAGCCC				20p12	Rattus norvegicus tumor necrosis factor superfamily, member 2 (Tnf), mRNA.	An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome [goid 1891] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Organelle consisting of networks of 60nm tubules organized around the microtubule organizing centre in some cell types. They transport receptors from late endosomes back to the plasma membrane for recycling and are also involved in membrane trafficking [goid 55037] [evidence ISS]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence IEA]; The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand [goid 1775] [evidence IDA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of L-glutamate transport [goid 2037] [evidence IDA]; A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual [goid 2439] [evidence IEA]; A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual [goid 2439] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion during immune response [goid 2740] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion during immune response [goid 2740] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; The process of apoptosis in transformed cells, cells that have undergone changes manifested by escape from control mechanisms, increased growth potential, alterations in the cell surface, karyotypic abnormalities, morphological and biochemical deviations from the norm [goid 6927] [evidence IEA]; The process of apoptosis in transformed cells, cells that have undergone changes manifested by escape from control mechanisms, increased growth potential, alterations in the cell surface, karyotypic abnormalities, morphological and biochemical deviations from the norm [goid 6927] [evidence ISS]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; An immune response mediated through a body fluid [goid 6959] [evidence IEA]; An immune response mediated through a body fluid [goid 6959] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS];  [goid 8625] [evidence IEA];  [goid 8625] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IDA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of chemokine production [goid 32722] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of chemokine production [goid 32722] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-18 production [goid 32741] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32800] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32800] [evidence ISS]; A series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor [goid 33209] [evidence IEA]; A series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor [goid 33209] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane [goid 42346] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane [goid 42346] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IGI]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of viral genome replication [goid 45071] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of viral genome replication [goid 45071] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence ISS]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that modulates the frequency, rate or extent of osteoclast differentiation [goid 45670] [evidence IEA]; Any process that modulates the frequency, rate or extent of osteoclast differentiation [goid 45670] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process involving iron that activates or increases the rate of translational initiation [goid 45994] [evidence IEA]; Any process involving iron that activates or increases the rate of translational initiation [goid 45994] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46325] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46325] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46325] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IEA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IMP]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence IEA]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51023] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51023] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of a protein into, out of, within or between cells [goid 51222] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence TAS]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IDA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	TNF-alpha; Tnfa; RATTNF	TNF-alpha; Tnfa; RATTNF
Rattus norvegicus	RefSeq	GI_62648311	ILMN_62583	GOLT1B_PREDICTED	XM_342782.3	XM_342782.3		362460	109472825	XM_342782.3	Golt1b_predicted	XP_342783.2	ILMN_1650148	0004920019	S	2571	GCCCTCAGACTTCTGGAAGCCCTATTGTGAGTTCCCTCAACCCTACTCCC	4	+	179964740-179964789	4q44	PREDICTED: Rattus norvegicus golgi transport 1 homolog B (S. cerevisiae) (predicted) (Golt1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643518-S	ILMN_267806	RGD1306812_PREDICTED	XM_001059752.1	XM_001059752.1		295090	109466698	XM_001059752.1	RGD1306812_predicted	XP_001059752.1	ILMN_1353827	0006110494	S	2202	GCTGTTCTGTGTTGTAGGGGAGATTGGTGTATGTGCAGCTTACTTGGTGC				2q31	PREDICTED: Rattus norvegicus similar to putative pheromone receptor V2R2 (predicted) (RGD1306812_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650388-S	ILMN_57128	LOC500619	XM_575993.1	XM_575993.1		500619	62650388	XM_575993.1	LOC500619	XP_575993.1	ILMN_1372808	0001450722	S	1216	GAGAGCGGACATCTCTGTGCTCTCCAACGCCCTCCTCAAGAGCAGGAAGA					PREDICTED: Rattus norvegicus similar to XPA binding protein 1 (LOC500619), mRNA.					
Rattus norvegicus	RefSeq	GI_62643720-S	ILMN_270152	LOC680665	XM_001058249.1	XM_001058249.1		680665	109465029	XM_001058249.1	LOC680665	XP_001058249.1	ILMN_1356557	0001850292	S	903	CGGGTCCTTCACCTACCCAGTGTCAAGCCAGAACAAGTCCTACAGAAACC	2	+	179424945-179424994	2q34	PREDICTED: Rattus norvegicus similar to Fc receptor-like protein 1 (LOC680665), mRNA.					
Rattus norvegicus	RefSeq	GI_11560094-S	ILMN_68429	ALDH9A1	NM_022273.2	NM_022273.2		64040	75905478	NM_022273.2	Aldh9a1	NP_071609.2	ILMN_1366343	0006020603	S	1056	CACTCATCAATGCCCCGCACCTGGAGCGAGTCCTCGGGTTTGTCAGGTCT	13	+	83028052-83028101	13q24	Rattus norvegicus aldehyde dehydrogenase 9 family, member A1 (Aldh9a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence NAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence ISS]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence IEA]; The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 9437] [evidence ISS]; The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 9437] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42136] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42136] [evidence IEA]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence IDA]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence ISS]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP [goid 16620] [evidence ISS]; Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+ [goid 19145] [evidence ISS]; Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+ [goid 19145] [evidence IEA]; Catalysis of the reaction: NAD+ + 4-trimethylammoniobutanal = NADH + 4-trimethylammoniobutanoate [goid 47105] [evidence IEA]	Tmaba-dh	Tmaba-dh
Rattus norvegicus	RefSeq	GI_62644650-S	ILMN_64878	LOC365983	XM_345317.2	XM_345317.2		365983	62644650	XM_345317.2	LOC365983	XP_345318.1	ILMN_1361701	0004120112	S	67	CTGGCTGTGATAGCTGGTGTCTGTTGGTTTCAGGGAAGCATACCCAGTGG					PREDICTED: Rattus norvegicus similar to BBC1 (LOC365983), mRNA.					
Rattus norvegicus	RefSeq	GI_62656464	ILMN_68059	LOC501705	XM_577110.1	XM_577110.1		501705	62656464	XM_577110.1	LOC501705	XP_577110.1	ILMN_1650143	0004670541	S	640	CGGCAGCCTGGGGAATTCTCGGTTGCTTCCCTGAAGTTTCGAGCAAAGGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L37a (LOC501705), mRNA.					
Rattus norvegicus	RefSeq	GI_62656251-S	ILMN_300702	RGD1309576_PREDICTED	XM_001078792.1	XM_001078792.1		287405	109491023	XM_001078792.1	RGD1309576_predicted	XP_001078792.1	ILMN_1368798	0000520093	S	684	CATGAACAAGGAGATGCGGTCCTCCTGGCCAACTCACTGCAAGACAGTCA				10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A730055C05 gene (predicted) (RGD1309576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644616-S	ILMN_62131	LOC365973	XM_345308.2	XM_345308.2		365973	62644616	XM_345308.2	LOC365973	XP_345309.2	ILMN_1363040	0001660408	S	967	AGCCCATAGGAGCAGTACACACTTGCCCAGTCCTGTGTCAGCAAAATCTG					PREDICTED: Rattus norvegicus similar to Rab6 interacting protein 1 (LOC365973), mRNA.					
Rattus norvegicus	RefSeq	GI_62666536-S	ILMN_58522	RGD1564613_PREDICTED	XM_576922.2	XM_576922.2		501520	109510443	XM_576922.2	RGD1564613_predicted	XP_576922.1	ILMN_1373947	0000380609	S	1568	GGCTTTGGAGAGGGATGGTTTACTAGACACTGGTACTTTCTGAGCTGGAC	X	-	22084255-22084304	Xq13	PREDICTED: Rattus norvegicus similar to MGC40405 protein (predicted) (RGD1564613_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578048-S	ILMN_272193	OLR594	NM_001000657.1	NM_001000657.1		404856	47578048	NM_001000657.1	Olr594	NP_001000657.1	ILMN_1369584	0001940427	S	386	CAAAAAGGTGCACACAGATGGTGGCAGTCTCCTGGCTGGGAGGTATCCCA	3	+	71617041-71617090	3q24	Rattus norvegicus olfactory receptor 594 (Olr594), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr594	Olr594
Rattus norvegicus	RefSeq	GI_62656731-S	ILMN_65706	TRIM37_PREDICTED	XM_340872.3	XM_340872.3		360592	109488708	XM_340872.3	Trim37_predicted	XP_340873.3	ILMN_1354629	0002030348	S	3011	TCTGATGCTGGGGAGGTACAGCCCACACTACCTGAAGGAGCCTCAGCTGC	10	+	75494023-75494072	10q26	PREDICTED: Rattus norvegicus tripartite motif protein 37 (predicted) (Trim37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543927-S	ILMN_270195	UNC50	NM_138919.2	NM_138919.2		192356	31543927	NM_138919.2	Unc50	NP_620274.1	ILMN_1370934	0002680280	S	935	TGCTGTACGGACTATCACTGGCGCTGGGATGGAACTTTACCCACACGTTG	9	+	36383292-36383341	9q21	Rattus norvegicus unc-50 homolog (C. elegans) (Unc50), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IMP]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IMP]	Uncl	Uncl
Rattus norvegicus	RefSeq	GI_62647718-S	ILMN_57121	LOC500237	XM_575587.1	XM_575587.1		500237	62647718	XM_575587.1	LOC500237	XP_575587.1	ILMN_1349476	0003990112	S	1804	CAGTTTCGTACTGGAACGGAGGCCCTTCATACAGCTTTGTAAGCCGGGGA				4q34	PREDICTED: Rattus norvegicus similar to Camello-like 2 (LOC500237), mRNA.					
Rattus norvegicus	RefSeq	GI_42476284-S	ILMN_278544	UBA52	NM_031687.2	NM_031687.2		64156	42476284	NM_031687.2	Uba52	NP_113875.1	ILMN_1351207	0005390056	S	443	TACCTGGCCTGTGACCCCGGGACCAAATAAAGTCCCCTTCCATCGACTGG	16	+	19427504-19427553	16p14	Rattus norvegicus ubiquitin A-52 residue ribosomal protein fusion product 1 (Uba52), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575932-S	ILMN_300655	OLR93	NM_001000141.1	NM_001000141.1		293234	47575932	NM_001000141.1	Olr93	NP_001000141.1	ILMN_1353670	0000110408	S	558	GGTGAAGTTGGCGTGTTTGGACATAGGTGCCACCAAGCGTTATAGCCTTG	1	-	161093121-161093170	1q32	Rattus norvegicus olfactory receptor 93 (Olr93), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr93	Olr93
Rattus norvegicus	RefSeq	GI_13492974-S	ILMN_296271	NR5A2	NM_021742.1	NM_021742.1		60349	13492974	NM_021742.1	Nr5a2	NP_068510.1	ILMN_1372043	0000110333	S	1573	CAGGTCAATGCTGCCCTGCTGGACTACACACTTTGCAACTACCCACAACA	13	-	49931900-49931949	13q13	Rattus norvegicus nuclear receptor subfamily 5, group A, member 2 (Nr5a2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ftf; Lrh-1	Ftf; Lrh-1
Rattus norvegicus	RefSeq	GI_62657489-S	ILMN_67962	RGD1311499_PREDICTED	XM_221199.3	XM_221199.3		303744	109489475	XM_221199.3	RGD1311499_predicted	XP_221199.3	ILMN_1374735	0006860402	S	1560	CTTCAGAGGCGGGCCGGTGTCAGCGTCTTGAGATAGCATTTAGCTGGGAT	10	-	110039543-110039592	10q32.3	PREDICTED: Rattus norvegicus similar to hypothetical protein BC013995 (predicted) (RGD1311499_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663972-S	ILMN_281122	RGD1309839_PREDICTED	XM_001074444.1	XM_001074444.1		291354	109506237	XM_001074444.1	RGD1309839_predicted	XP_001074444.1	ILMN_1350223	0002340315	S	775	GCAGGGGCTGAAGAAGAACTGGGAAGAGGTGCACAAAGAGTTCCAGTCCC				17q12.3	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC26778 (predicted) (RGD1309839_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642863-S	ILMN_64792	ZNF366_PREDICTED	XM_226715.3	XM_226715.3		310024	62642863	XM_226715.3	Znf366_predicted	XP_226715.3	ILMN_1370178	0000060541	S	1913	GGAGCCGTTTGACCTCTCCCAAAAGCGCAGTGCAAAGGGGCCAATGTTCC					PREDICTED: Rattus norvegicus zinc finger protein 366 (predicted) (Znf366_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649628-S	ILMN_266145	ZC3H12A_PREDICTED	XM_001057109.1	XM_001057109.1		313587	109477214	XM_001057109.1	Zc3h12a_predicted	XP_001057109.1	ILMN_1374100	0000770333	S	1997	TGGCCTACCCTGGAAGTTGGACAGAGGGACAAGTGGAGCAGGCAAGGGAA				5q36	PREDICTED: Rattus norvegicus zinc finger CCCH type containing 12A (predicted) (Zc3h12a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641658-S	ILMN_51520	LOC499296	XM_574589.1	XM_574589.1		499296	62641658	XM_574589.1	LOC499296	XP_574589.1	ILMN_1357355	0007040594	S	935	GGATGCTTGCTACCTGCTTGCCCACAGAGATGAAGTCTTTGGCCCTGAGC					PREDICTED: Rattus norvegicus similar to tetraspanin (LOC499296), mRNA.					
Rattus norvegicus	RefSeq	GI_13591909-S	ILMN_47897	AGTR1B	NM_031009.2	NM_031009.2		81638	82524857	NM_031009.2	Agtr1b	NP_112271.2	ILMN_1371359	0000450114	S	1649	GGAGATGGGAGGTCAAGAGTTTCTAAGGGTCCAGGAAGCTACCCATCTGT	2	-	105503751-105503800	2q24	Rattus norvegicus angiotensin II receptor, type 1b (Agtr1b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IMP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The volume enclosed by the membrane or protein that forms a vesicle [goid 31983] [evidence IDA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IGI]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IGI]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence IGI]; The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence ISS]; The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence IEA]; The physiological response of the kidneys to a decrease in blood flow [goid 1999] [evidence TAS]; The process by which angiotensin directly modulates the rate of urine output by the kidney [goid 2019] [evidence TAS]; The process by which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system [goid 2035] [evidence IMP]; The process by which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system [goid 2035] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IGI]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]	 [goid 1596] [evidence IMP];  [goid 1596] [evidence NAS];  [goid 1596] [evidence IMP]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA];  [goid 4945] [evidence IEA];  [goid 4945] [evidence IEA]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IEA]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IMP]	AT3; Agtr1; AT1; AT1B	AT3; Agtr1; AT1; AT1B
Rattus norvegicus	RefSeq	GI_12018279	ILMN_264380	BCL2L11	NM_022612.1	NM_022612.1		64547	12018279	NM_022612.1	Bcl2l11	NP_072134.1	ILMN_1651197	0005670458	A	340	TACCGAGAGGCGGAAGACCACCCGCAAATGGTTATCTTACAACTGTTACG	3	+	115722618-115722667	3q36	Rattus norvegicus BCL2-like 11 (apoptosis facilitator) (Bcl2l11), transcript variant 1, mRNA.	Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 2260] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence ISS]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; The process whose specific outcome is the progression of the ear over time, from its formation to the mature structure. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 43583] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; Any process that modulates the frequency, rate or extent of the deposition of coloring matter occurring during development [goid 48070] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence ISS]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence IEA]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence IEA]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]	BimL; Bim	BimL; Bim
Rattus norvegicus	RefSeq	GI_25282466-A	ILMN_264380	BCL2L11	NM_022612.1	NM_022612.1		64547	12018279	NM_022612.1	Bcl2l11	NP_072134.1	ILMN_1376927	0000070427	A	341	ACCGAGAGGCGGAAGACCACCCGCAAATGGTTATCTTACAACTGTTACGA	3	+	115722619-115722668	3q36	Rattus norvegicus BCL2-like 11 (apoptosis facilitator) (Bcl2l11), transcript variant 1, mRNA.	Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 2260] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence ISS]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; The process whose specific outcome is the progression of the ear over time, from its formation to the mature structure. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 43583] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; Any process that modulates the frequency, rate or extent of the deposition of coloring matter occurring during development [goid 48070] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence ISS]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence IEA]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow [goid 35148] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence IEA]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]	BimL; Bim	BimL; Bim
Rattus norvegicus	RefSeq	GI_62653801-S	ILMN_272209	RGD1310670_PREDICTED	XM_001075872.1	XM_001075872.1		300776	109484854	XM_001075872.1	RGD1310670_predicted	XP_001075872.1	ILMN_1373631	0000070131	S	3034	CAATCGGTGTGGATCTCCAGGGGGCCCTCATGACCTTTGCTCGCAATCTC				8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12476 (predicted) (RGD1310670_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646637-S	ILMN_274892	RGD1566180_PREDICTED	XM_001060502.1	XM_001060502.1		311956	109472939	XM_001060502.1	RGD1566180_predicted	XP_001060502.1	ILMN_1362814	0004210739	S	1226	GTGTTCCGAGGCCACACCTTCGTCATCAACTGTCTCCAGGTACACGGCCA				4q11	PREDICTED: Rattus norvegicus RGD1566180 (predicted) (RGD1566180_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646579	ILMN_70109	ABCB11	XM_579531.2	XM_579531.2		83569	109469382	XM_579531.2	Abcb11	XP_579531.2	ILMN_1650240	0002680082	S	979	CTAGGAGGGAAGGGGAACAAGGAGCCCCCACCTGTACTAGAGCATCAGAG	3|NW_047672.1	+	206900-206949		PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 11 (Abcb11), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA];  [goid 15722] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, out of a cell or organelle [goid 46618] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 15126] [evidence IDA]; Enables the directed movement of a drug into, out of, within or between cells. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 15238] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646577-A	ILMN_70109	ABCB11	XM_579531.2	XM_579531.2		83569	109469382	XM_579531.2	Abcb11	XP_579531.2	ILMN_1376760	0002850092	S	1944	CAGCCCTCTCATTGGCATTGGGGCAGCCGTCATAGGTCTGAGTATAGCCA	3|NW_047672.1	+	264668-264707:267910-267919		PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 11 (Abcb11), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA];  [goid 15722] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, out of a cell or organelle [goid 46618] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 15126] [evidence IDA]; Enables the directed movement of a drug into, out of, within or between cells. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 15238] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20806158-S	ILMN_286521	XAB2	NM_139109.1	NM_139109.1		245976	20806158	NM_139109.1	Xab2	NP_620809.1	ILMN_1374330	0004050167	S	2332	CGGGCAGAGCGGCATGGATGACATGAAGTTGCTGGAACAGAGAGCAGAAC	12	+	2545133-2545182	12p12	Rattus norvegicus XPA binding protein 2 (Xab2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the general nucleotide excision repair pathway [goid 6283] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10944529] [evidence ISS]	Ath55	Ath55
Rattus norvegicus	RefSeq	GI_62647635-S	ILMN_52874	LOC500211	XM_575563.1	XM_575563.1		500211	62647635	XM_575563.1	LOC500211	XP_575563.1	ILMN_1369089	0000360450	S	87	CCCCTGCACCTGAGACACCGCCAGAACCTGAAGGAAACAGACCTGATAGC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500211), mRNA.					
Rattus norvegicus	RefSeq	GI_19424273-S	ILMN_283808	WFDC1	NM_133581.1	NM_133581.1		171112	19424273	NM_133581.1	Wfdc1	NP_598265.1	ILMN_1357606	0005390022	S	767	GACCCTAGACGTCAAACTCCATTCCACAGAACGGGACTCCAGAGCTCCTG	19	+	49942829-49942878	19q12	Rattus norvegicus WAP four-disulfide core domain 1 (Wfdc1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	ps20	ps20
Rattus norvegicus	RefSeq	GI_62651479-S	ILMN_66037	LOC503061	XM_580259.1	XM_580259.1		503061	62651479	XM_580259.1	LOC503061	XP_580259.1	ILMN_1357352	0002120040	S	551	CCAGGCAGACTGTATCAGGGAGACTGTACCAGGGAGACTGTACCAGGCAG					PREDICTED: Rattus norvegicus LOC503061 (LOC503061), mRNA.					
Rattus norvegicus	RefSeq	GI_56090430-S	ILMN_272735	SERPINB9	NM_001007732.1	NM_001007732.1		361241	56090430	NM_001007732.1	Serpinb9	NP_001007733.1	ILMN_1363621	0001500286	S	1689	TCCACCCATGTCTTGATGCCTTTATTTGGCTACTACTGGCCCCAGCATCC	17	-	37780250-37780299	17p12	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B, member 9 (Serpinb9), mRNA.		A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948455-S	ILMN_276500	ARHGAP8	NM_001004242.1	NM_001004242.1		300115	51948455	NM_001004242.1	Arhgap8	NP_001004242.1	ILMN_1367483	0006450204	S	1360	CTCACCATACCTGTCTCGCCTCCGTATCCCCTGAGTAGCTGGAGACACCT	7	+	122794273-122794306:122794307-122794322	7q34	Rattus norvegicus Rho GTPase activating protein 8 (Arhgap8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]		MGC94058	MGC94058
Rattus norvegicus	RefSeq	GI_23618880-S	ILMN_284091	GSBS	NM_153467.1	NM_153467.1		266705	23618880	NM_153467.1	Gsbs	NP_703197.1	ILMN_1352190	0003290338	S	1523	GCATCTGCACTTCATCCACCAGACAGCAGACAGGGAGAAGGTGAGGACTG	4	+	84863067-84863116	4q24	Rattus norvegicus G substrate (Gsbs), mRNA.			Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence ISS];  [goid 4865] [evidence IEA];  [goid 4865] [evidence ISS]; Stops, prevents or reduces the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule [goid 19212] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62079036-S	ILMN_287868	TAF1C	NM_001014155.1	NM_001014155.1		361420	62079036	NM_001014155.1	Taf1c	NP_001014177.1	ILMN_1355555	0005900253	S	2965	CCCAAGTGCCTCCTGACATGGCTGTTGTGGGTCATTTGTGCGACAGTCCA	19	-	49842433-49842482	19q12	Rattus norvegicus TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C (Taf1c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13027470-S	ILMN_294396	TAS2R105	NM_023999.1	NM_023999.1		78985	13027470	NM_023999.1	Tas2r105	NP_076489.1	ILMN_1372617	0002360066	S	475	CATGGAAACAGGACCAGTGGGACACATTGGGAGAAGAGAGAATTCACAAG	4	-	169393933-169393982	4q42	Rattus norvegicus taste receptor, type 2, member 105 (Tas2r105), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required to receive a bitter taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50913] [evidence ISS]; The series of events required to receive a bitter taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50913] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R9	T2R9
Rattus norvegicus	RefSeq	GI_62656801	ILMN_69353	LOC360570	XM_340847.2	XM_340847.2		360570	62656801	XM_340847.2	LOC360570	XP_340848.2	ILMN_1650797	0004670092	S	9294	CCCGACGGCAGACATCGAGGAAGTGGGGCAAACTCCAAGACGGTCAAAGA					PREDICTED: Rattus norvegicus similar to myosin XVIIIa (LOC360570), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576492-S	ILMN_302412	OLR1615	NM_001001003.1	NM_001001003.1		405371	47576492	NM_001001003.1	Olr1615	NP_001001003.1	ILMN_1375123	0005290563	S	771	ATCAGTGATGGTCATGTATGTGAGCCCAACATCTGAACACGCAGCTGGAG	15	+	26138593-26138642	15p14	Rattus norvegicus olfactory receptor 1615 (Olr1615), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1615	Olr1615
Rattus norvegicus	RefSeq	GI_62666202-S	ILMN_62984	LOC502451	XM_577932.1	XM_577932.1		502451	62666202	XM_577932.1	LOC502451	XP_577932.1	ILMN_1363740	0006370059	S	528	GAGGTCTTGTTCCGGGTCTCCGGTTCTCAGCTGTATGATGCGGGAATCCC				20q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC502451), mRNA.					
Rattus norvegicus	RefSeq	GI_62665279-S	ILMN_272605	IL34	NM_001025766.1	NM_001025766.1		498951	71043737	NM_001025766.1	Il34	NP_001020937.1	ILMN_1365257	0004480541	S	1238	ATATCACCTGGAGCCTCGGGGAGGGTTGTGGAGGGGATGGCTGGTTGTTA	19	-	40662960-40663009	19q12	Rattus norvegicus interleukin 34 (Il34), mRNA.				MGC112852	MGC112852
Rattus norvegicus	RefSeq	GI_62643634-S	ILMN_57287	LOC502530	XM_578016.1	XM_578016.1		502530	62643634	XM_578016.1	LOC502530	XP_578016.1	ILMN_1360065	0004050253	S	542	CGAGCCCCTCAAAGTTCATACACATGAGCCCCTCAAAGTTCATACACACG					PREDICTED: Rattus norvegicus similar to CG3950-PA (LOC502530), mRNA.					
Rattus norvegicus	RefSeq	GI_62656099-S	ILMN_48392	LOC497908	XM_579756.1	XM_579756.1		497908	62656099	XM_579756.1	LOC497908	XP_579756.1	ILMN_1360067	0003140408	S	453	AGGAAGGAGCTTGTCCTGGAAGATGACTGCTTGGGAGGAACGCATCCGAG					PREDICTED: Rattus norvegicus LOC497908 (LOC497908), mRNA.					
Rattus norvegicus	RefSeq	GI_47576548-S	ILMN_302723	OLR1639	NM_001000833.1	NM_001000833.1		405122	47576548	NM_001000833.1	Olr1639	NP_001000833.1	ILMN_1368090	0001450731	S	865	TACACTCTGTGGAACCAGGAGGTGAAGACGGCCTTGAGGAAAATGGTAGG	15	-	27820698-27820747	15p14	Rattus norvegicus olfactory receptor 1639 (Olr1639), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1639	Olr1639
Rattus norvegicus	RefSeq	GI_57527154-S	ILMN_290049	EBAG9	NM_001009665.1	NM_001009665.1		299864	57527154	NM_001009665.1	Ebag9	NP_001009665.1	ILMN_1365903	0001570600	S	1549	GCTGCAATGACAACTTCGTGTGACAAGAACTAGGATTAGTAGCTTTTCCC	7	+	80532970-80533019	7q31	Rattus norvegicus estrogen receptor-binding fragment-associated gene 9 (Ebag9), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	MGC94627	MGC94627
Rattus norvegicus	RefSeq	GI_62663526-S	ILMN_298682	RGD1560349_PREDICTED	XR_008085.1	XR_008085.1		364694	109505661	XR_008085.1	RGD1560349_predicted		ILMN_1366194	0003450048	S	3	GGCAGAAACGCGTGAAGACCTAAATCTGCCCGATGCTGTGAGTACCAGGA				17p12	PREDICTED: Rattus norvegicus similar to histone-fold protein CHRAC17 (predicted) (RGD1560349_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649939-S	ILMN_55191	ATP13A2_PREDICTED	XM_342962.3	XM_342962.3		362645	109475696	XM_342962.3	Atp13a2_predicted	XP_342963.3	ILMN_1350422	0005910440	S	3833	GCTGCGGCCTAAACGGGCCTCCAAGAAGCAATTCAAGCAGCTACAACGGG	5	+	159866022-159866071	5q36	PREDICTED: Rattus norvegicus ATPase type 13A2 (predicted) (Atp13a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661221-S	ILMN_67436	LOC501968	XM_577396.1	XM_577396.1		501968	62661221	XM_577396.1	LOC501968	XP_577396.1	ILMN_1365123	0006620301	S	278	GCTGACTTCTGACAGCAACCCCCAATGCTACAAGCCCTCCCTGGATGACA					PREDICTED: Rattus norvegicus similar to mKIAA0112 protein (LOC501968), mRNA.					
Rattus norvegicus	RefSeq	GI_62652523-S	ILMN_290079	RGD1565809_PREDICTED	XR_009572.1	XR_009572.1		366942	109482294	XR_009572.1	RGD1565809_predicted		ILMN_1365490	0006130129	S	181	CCCCGCCCCACCTGGCCTGATAAAGCACGAAGGCAGGGATACGAGGCTAA				7q33	PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (predicted) (RGD1565809_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47523965-S	ILMN_275056	PHACTR2	NM_214458.1	NM_214458.1		308291	47523965	NM_214458.1	Phactr2	NP_999623.1	ILMN_1350710	0001450452	S	1493	GCTCAGCCTAAGACCTACTGTGCCAGAGCTACAAGCCCGAAGAATCCTGC	1	-	8004495-8004544	1p13	Rattus norvegicus phosphatase and actin regulator 2 (Phactr2), mRNA.			Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639781-S	ILMN_65218	LOC365243	XM_344891.2	XM_344891.2		365243	62639781	XM_344891.2	LOC365243	XP_344892.2	ILMN_1367237	0007050056	S	3264	CAGACTCAGGGTGTGCTGGGTGGTGGCAAAGAGACTGAAACCATACAGGG				1q22	PREDICTED: Rattus norvegicus similar to Gnefr protein (LOC365243), mRNA.					
Rattus norvegicus	RefSeq	GI_62654147-S	ILMN_295326	RNF7_PREDICTED	XM_001065291.1	XM_001065291.1		300948	109485115	XM_001065291.1	Rnf7_predicted	XP_001065291.1	ILMN_1351367	0004010451	S	789	CTCCTACCCTTTGCTCCTAATACCCTTTGTTGTTGGGAGTGAGGCAACCC				8q31	PREDICTED: Rattus norvegicus ring finger protein 7 (predicted) (Rnf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666248-S	ILMN_65015	LOC502472	XM_577951.1	XM_577951.1		502472	62666248	XM_577951.1	LOC502472	XP_577951.1	ILMN_1356520	0006290438	S	415	CCAGGGAGCAGCTGGGCCAAAGGACAGGTTTGAATGAGGACATGTTCGAT					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502472), mRNA.					
Rattus norvegicus	RefSeq	GI_47576488-S	ILMN_298767	OLR1612	NM_001000096.1	NM_001000096.1		290010	47576488	NM_001000096.1	Olr1612	NP_001000096.1	ILMN_1370846	0001410215	S	664	CTGGCCATGCTCAAGAAACACTCAAGCTCAGGTGAGAGCACCAGCAGGGC	15	-	26032870-26032919	15p14	Rattus norvegicus olfactory receptor 1612 (Olr1612), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1612	Olr1612
Rattus norvegicus	RefSeq	GI_62654654-S	ILMN_68551	LOC501096	XM_576511.1	XM_576511.1		501096	62654654	XM_576511.1	LOC501096	XP_576511.1	ILMN_1367707	0000050082	S	1200	GTCTGCGTCCAGGACAGCGGTCTCAACAGTGCTTCTTCAGGCAATGAGGA				9q12	PREDICTED: Rattus norvegicus similar to triggering receptor expressed on myeloid cells-like 1 (LOC501096), mRNA.					
Rattus norvegicus	RefSeq	GI_62647736-S	ILMN_273292	RGD1560859_PREDICTED	XR_008965.1	XR_008965.1		500243	109473854	XR_008965.1	RGD1560859_predicted		ILMN_1370416	0001410537	S	1022	GGTGGCCAATGCAAGTGCAGAGGAGGCCATTATTGGTACCGACGTGCTGC				4q34	PREDICTED: Rattus norvegicus similar to 2300003P22Rik protein (predicted) (RGD1560859_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50657417-S	ILMN_296469	E230034O05RIK	NR_002154.1	NR_002154.1		415065	50657417	NR_002154.1	E230034O05Rik		ILMN_1366830	0003610270	S	956	CCACTGGCTTCCATGTGTCTGTCTAGGGAGAGAGACTGTGCGAATCTCTG	20	-	3720427-3720453:3720528-3720550	20p12	Rattus norvegicus E230034O05Rik gene (E230034O05Rik), non-coding RNA.					
Rattus norvegicus	RefSeq	GI_62648837-S	ILMN_66322	CCL19_PREDICTED	XM_342824.2	XM_342824.2		362506	62648837	XM_342824.2	Ccl19_predicted	XP_342825.2	ILMN_1351677	0004760408	S	600	CCCAGTCTGTGCCTAGAGAGTCGGTGTGAACGTGAGTGTGAGCATGACAG				5q22	PREDICTED: Rattus norvegicus chemokine (C-C motif) ligand 19 (predicted) (Ccl19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078942-S	ILMN_286062	APOOL	NM_001014105.1	NM_001014105.1		317191	62078942	NM_001014105.1	Apool	NP_001014127.1	ILMN_1369989	0000870411	S	746	GAAGGCCTGATGAAATCCATGCCAAAACGCCTGACCTGGAACATTCGGTG	X	+	100965183-100965232	Xq31	Rattus norvegicus apolipoprotein O-like (Apool), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62648756-S	ILMN_265678	MAP3K7_PREDICTED	XM_001062961.1	XM_001062961.1		313121	109476273	XM_001062961.1	Map3k7_predicted	XP_001062961.1	ILMN_1371190	0001940706	S	2701	GGCAGGTCAGCAGAGGCGAATGAGGAAGATAATGGAGTAGAATCAAGCGC				5q21	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase kinase 7 (predicted) (Map3k7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666424-S	ILMN_52060	LOC298349	XM_233323.3	XM_233323.3		298349	62666424	XM_233323.3	LOC298349	XP_233323.3	ILMN_1351547	0003130113	S	31	CAGGACTGGGAATACCTGATGAGCTGTGGGCCACCATGATTGGCGAGATC				Xq11	PREDICTED: Rattus norvegicus similar to B-cell translocation gene 1 (LOC298349), mRNA.					
Rattus norvegicus	RefSeq	GI_27465550-S	ILMN_282050	PRL8A5	NM_173110.1	NM_173110.1		286889	27465550	NM_173110.1	Prl8a5	NP_775133.1	ILMN_1357111	0004070435	S	15	CAGCCTCCTTAGGGCTCCCCAGTGATGGAACTGGCATTGAGTCAACCTTC	17	+	44052933-44052982	17p11	Rattus norvegicus prolactin family 8, subfamily a, member 5 (Prl8a5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658205-S	ILMN_55782	GSCL_PREDICTED	XM_344044.3	XM_344044.3		363831	109493586	XM_344044.3	Gscl_predicted	XP_344045.3	ILMN_1352312	0003440435	S	294	CTCCCCCTTGACGGCGCCGAGCACAGGATCTCCGGCGCTGACTGGCACAA	11	+	85060738-85060787	11q23	PREDICTED: Rattus norvegicus goosecoid-like (predicted) (Gscl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662411-S	ILMN_275275	IFI30	NM_001030026.1	NM_001030026.1		290644	71795647	NM_001030026.1	Ifi30	NP_001025197.1	ILMN_1357094	0001500170	S	1139	GCTCAGCACACAATGCCCCACACCCTGGAGTTCAAGCCTCATCAGAAAAG	16	+	19185294-19185343	16p14	Rattus norvegicus interferon gamma inducible protein 30 (Ifi30), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]		MGC124690	MGC124690
Rattus norvegicus	RefSeq	GI_20376819-S	ILMN_294571	MFN1	NM_138976.1	NM_138976.1		192647	20376819	NM_138976.1	Mfn1	NP_620432.1	ILMN_1370141	0005670102	S	1787	CCATGGGCATCATAGTTGTTGGGGGCGTGATTTGGAAAACAGTGGGCTGG	2	+	118780855-118780895:118782959-118782967	2q25	Rattus norvegicus mitofusin 1 (Mfn1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence ISS]; Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Fzo1b	Fzo1b
Rattus norvegicus	RefSeq	GI_27686128-S	ILMN_265400	RGD1562432_PREDICTED	XR_008397.1	XR_008397.1		301606	109487509	XR_008397.1	RGD1562432_predicted		ILMN_2040736	0006940161	S	2890	AGCTTCAACAGCGGGGACATCTGTGGCTACATCGACCGCAGCTTCGCCTT				9q36	PREDICTED: Rattus norvegicus RGD1562432 (predicted) (RGD1562432_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641717-S	ILMN_274382	RCE1	XM_001071802.1	XM_001071802.1		309153	109463341	XM_001071802.1	Rce1	XP_001071802.1	ILMN_1370669	0003840161	S	1192	TCGTGATGGGGCGGATGAGCAGCAACTGGAAGTGAGGGGACAAGGGCAAA				1q42	PREDICTED: Rattus norvegicus Ras and a-factor-converting enzyme 1 homolog (S. cerevisiae) (Rce1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62647396-S	ILMN_64964	LOC500167	XM_575519.1	XM_575519.1		500167	62647396	XM_575519.1	LOC500167	XP_575519.1	ILMN_1368056	0005890364	S	83	TTGACACAAACTCCAGTCACCCTGCTTATCAGCATTGGAGGTCAAGCCTC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC500167), mRNA.					
Rattus norvegicus	RefSeq	GI_57114311-S	ILMN_300341	WFDC6B	NM_001008867.1	NM_001008867.1		408225	57114311	NM_001008867.1	Wfdc6b	NP_001008867.1	ILMN_1349260	0000840736	S	399	TCATATCAGCTCCCAGCCCTCCGCATGCAAAATCACAGTTGTGCGCCAGG	3	+	155641716-155641765	3q42	Rattus norvegicus WAP four-disulfide core domain 6B (Wfdc6b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663885-S	ILMN_274341	UPF2_PREDICTED	XM_001071022.1	XM_001071022.1		361271	109506161	XM_001071022.1	Upf2_predicted	XP_001071022.1	ILMN_1353804	0005420167	S	1372	ATGCCAGATCTTCCTCAGGACAAACCGACACCAGAAGAGCATGGACCTGG				17q12.3	PREDICTED: Rattus norvegicus UPF2 regulator of nonsense transcripts homolog (yeast) (predicted) (Upf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865949-A	ILMN_289717	MBOAT5	NM_001012189.1	NM_001012189.1		362434	58865949	NM_001012189.1	Mboat5	NP_001012189.1	ILMN_1376336	0007040253	S	1343	CATGGGCTACTCTATGACTGCCTTCTGCCTCTTCACATGGGACAAATGGC	4	+	160826369-160826418	4q42	Rattus norvegicus membrane bound O-acyltransferase domain containing 5 (Mboat5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine + acyl-CoA = phosphatidylcholine + CoA [goid 47184] [evidence IEA]	Grcc3f; MGC108998	Grcc3f; MGC108998
Rattus norvegicus	RefSeq	GI_62648390-S	ILMN_289717	MBOAT5	NM_001012189.1	NM_001012189.1		362434	58865949	NM_001012189.1	Mboat5	NP_001012189.1	ILMN_2040134	0007100382	A	1214	CCTCATTGTTATCGTGGAAAAGCAGGCCACCAACCTCATTCGGGACAGCC	4	+	160826166-160826190:160826265-160826289	4q42	Rattus norvegicus membrane bound O-acyltransferase domain containing 5 (Mboat5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine + acyl-CoA = phosphatidylcholine + CoA [goid 47184] [evidence IEA]	Grcc3f; MGC108998	Grcc3f; MGC108998
Rattus norvegicus	RefSeq	GI_62665066-S	ILMN_52573	LOC502194	XM_577655.1	XM_577655.1		502194	62665066	XM_577655.1	LOC502194	XP_577655.1	ILMN_1361142	0004280706	S	634	GGCCCACTCTACCACCAGAAAAGGAGTTTGAAGTTGTGCAGACAGACCTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610029G23 (LOC502194), mRNA.					
Rattus norvegicus	RefSeq	GI_62661605	ILMN_51569	DDX26_PREDICTED	XM_341337.2	XM_341337.2		361057	62661605	XM_341337.2	Ddx26_predicted	XP_341338.2	ILMN_1650189	0005690358	S	4737	TGCCATCCCCAAGCACACATGGCCCACAGATTGAGAAGCACTGCCTGAAG				15p12	PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 (predicted) (Ddx26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639598-S	ILMN_58996	LOC499141	XM_574435.1	XM_574435.1		499141	62639598	XM_574435.1	LOC499141	XP_574435.1	ILMN_1370434	0000940008	S	1552	CCTGGCTCCGTCTGTTGGGATGAGGGAAGGTGTATATGAAGTCTCCAGAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931406B18 (LOC499141), mRNA.					
Rattus norvegicus	RefSeq	GI_62638417-S	ILMN_283537	AHRR	NM_001024285.1	NM_001024285.1		498999	66730502	NM_001024285.1	Ahrr	NP_001019456.1	ILMN_1368540	0007050091	S	4351	ACCGAGGTCGTCCCTACTCTAGCATCTCACCATATGCACTGACTCCAGGC	1	+	29894569-29894618	1p11	Rattus norvegicus aryl-hydrocarbon receptor repressor (Ahrr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393103-S	ILMN_293084	CHKB	NM_017177.1	NM_017177.1		29367	8393103	NM_017177.1	Chkb	NP_058873.1	ILMN_1372444	0003710047	S	1205	GCTCCTTTTCATCCGTCATTATCTGGCGGAGGTTCAGAAAGGTGAGGTCC	7	-	127747578-127747627	7q34	Rattus norvegicus choline kinase beta (Chkb), mRNA.		The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]	Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence IDA]; Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence ISS]; Catalysis of the reaction: ATP + choline = ADP + O-phosphocholine [goid 4103] [evidence IEA]; Catalysis of the reaction: ATP + ethanolamine = ADP + O-phosphoethanolamine [goid 4305] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Chetk; Chkl	Chetk; Chkl
Rattus norvegicus	RefSeq	GI_57012349-A	ILMN_293206	H2-OB	NM_001008846.1	NM_001008846.1		365542	57012349	NM_001008846.1	H2-Ob	NP_001008846.1	ILMN_1376268	0005220088	S	696	CCTGCTTGGGCTGACTGTCTTTCTGGTGGGAGCTGTCATCCACCTCAAGG	20	-	4754393-4754442	20p12	Rattus norvegicus histocompatibility 2, O region beta locus (H2-Ob), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	The process by which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex [goid 2504] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]		RT1-Bb2	RT1-Bb2
Rattus norvegicus	RefSeq	GI_62664932	ILMN_68839	LOC361373	XM_341652.2	XM_341652.2		361373	62664932	XM_341652.2	LOC361373	XP_341653.2	ILMN_1649726	0002100025	S	1016	CATGGGAGACAGTTAGAGCCCAAGGGAAGGATGGTTTGAAGTACCAGAGC				5q12	PREDICTED: Rattus norvegicus similar to cylindromatosis (turban tumor syndrome) (LOC361373), mRNA.					
Rattus norvegicus	RefSeq	GI_62650707-S	ILMN_50275	MBIP_PREDICTED	XM_343066.3	XM_343066.3		362740	109478183	XM_343066.3	Mbip_predicted	XP_343067.2	ILMN_1373005	0000430685	S	1117	CCCGTGAGACCACACTGTCACGTTGCTTCCCTTTAAGATGCGAGTGCGTG	6	-	76728475-76728518:76728519-76728524	6q23	PREDICTED: Rattus norvegicus MAP3K12 binding inhibitory protein 1 (predicted) (Mbip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662665-S	ILMN_51189	RGD1564073_PREDICTED	XM_573912.2	XM_573912.2		498633	109503387	XM_573912.2	RGD1564073_predicted	XP_573912.2	ILMN_1353085	0003780403	S	1196	AAGCCACAGTGTTCCCGCAGGGGGCTACCCCAGGTTCATTCCCTTGGCCT	16	+	49272802-49272851	16q11	PREDICTED: Rattus norvegicus similar to Heslike (predicted) (RGD1564073_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705494-S	ILMN_275802	SPATA19	NM_134384.1	NM_134384.1		171403	19705494	NM_134384.1	Spata19	NP_599211.1	ILMN_1363781	0001990047	S	594	GAGCCCTTGGTTCCCACCATGGCAATGCCGAAAACTTCTTGCCGAAGTGC				8q13	Rattus norvegicus spermatogenesis associated 19 (Spata19), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		spergen-1	spergen-1
Rattus norvegicus	RefSeq	GI_62645207-S	ILMN_69766	LOC366046	XM_345355.2	XM_345355.2		366046	62645207	XM_345355.2	LOC366046	XP_345356.2	ILMN_1360310	0001090398	S	378	ATCTGGATGGGCCTGTGGGGTCTTCCGGCCTGCTATCACACCATCTGTCA					PREDICTED: Rattus norvegicus similar to polyubiquitin 2 - Arabidopsis thaliana (LOC366046), mRNA.					
Rattus norvegicus	RefSeq	GI_62648013-S	ILMN_48195	RGD1563152_PREDICTED	XM_575637.2	XM_575637.2		500287	109472456	XM_575637.2	RGD1563152_predicted	XP_575637.1	ILMN_1362778	0000730692	S	4333	GCTCCTAAAGGTGGGGAACCCTCCATAGAAAACCCTTCACCCATGCCCCC	4	-	148562550-148562599	4q42	PREDICTED: Rattus norvegicus similar to WARP (predicted) (RGD1563152_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665264	ILMN_63162	AP1G1	XM_341686.3	XM_341686.3		171494	109508100	XM_341686.3	Ap1g1	XP_341687.2	ILMN_1650237	0005360161	S	3827	GGAGCAGACCCTGTCACAAACACCATGGCCCATAGGAAGAGCAGTACCAG	19	+	39734634-39734683	19q12	PREDICTED: Rattus norvegicus adaptor-related protein complex 1, gamma 1 subunit, transcript variant 2 (Ap1g1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence IDA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IPI]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646008-S	ILMN_288088	RGD1559924_PREDICTED	XR_007622.1	XR_007622.1		499906	109470984	XR_007622.1	RGD1559924_predicted		ILMN_1349967	0001660181	S	47	CAAGTGTGGGTGATGACCTGCTTTCTGCTGGCACTGAGGATGATTTCCAC				3q41	PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 1 (eIF1) (predicted) (RGD1559924_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641758-S	ILMN_278918	LOC309169	XM_001074317.1	XM_001074317.1		309169	109463396	XM_001074317.1	LOC309169	XP_001074317.1	ILMN_1372169	0001190551	S	2127	AACAGGAGCAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAA				1q43	PREDICTED: Rattus norvegicus tangerin (LOC309169), mRNA.					
Rattus norvegicus	RefSeq	GI_62644237-S	ILMN_65921	CDC14A_PREDICTED	XM_227618.4	XM_227618.4		310806	109465420	XM_227618.4	Cdc14a_predicted	XP_227618.3	ILMN_1360390	0001850600	S	3348	AACATTCTGTTCTTGGTACGCGGTGGTCTTTGCCCTGTGAGCATGCATGG	2	-	212496618-212496667	2q41	PREDICTED: Rattus norvegicus CDC14 cell division cycle 14 homolog A (S. cerevisiae) (predicted) (Cdc14a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718103-S	ILMN_65679	LOC503327	XM_578861.1	XM_578861.1		503327	62718103	XM_578861.1	LOC503327	XP_578861.1	ILMN_1357796	0007100095	S	820	ACATGTGGACAATAGGAGTGGTCTTTAAATTACTGAGGGTAAATCCCAAC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC503327), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665803-S	ILMN_66818	LOC499414	XM_579966.1	XM_579966.1		499414	62665803	XM_579966.1	LOC499414	XP_579966.1	ILMN_1368326	0001580592	S	1206	GCCAGTTGTGATTTGGATACGAGGGAGCCAGACCCTGTGCCTGTTTGCTG					PREDICTED: Rattus norvegicus LOC499414 (LOC499414), mRNA.					
Rattus norvegicus	RefSeq	GI_26449154-S	ILMN_270230	CCR4	NM_133532.2	NM_133532.2		171054	26449154	NM_133532.2	Ccr4	NP_598216.2	ILMN_1361974	0002370739	S	930	ATTCCGCAAGTACATCGCCCAACTCTTCAGAACGTGCCGGGGTCCTCCTG	8	-	118883251-118883300	8q32	Rattus norvegicus chemokine (C-C motif) receptor 4 (Ccr4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; A process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it [goid 2507] [evidence IEA]; A process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it [goid 2507] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence TAS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]	Cmkbr4	Cmkbr4
Rattus norvegicus	RefSeq	GI_62659566-S	ILMN_56875	LOC360860	XM_341137.2	XM_341137.2		360860	62659566	XM_341137.2	LOC360860	XP_341138.2	ILMN_1352148	0001240487	S	1520	GCACAGGGCTCAACTGGGCTTTGCCATTGTATCCCATCTGGAGCTATGAG					PREDICTED: Rattus norvegicus similar to constitutive photomorphogenic protein 1 (predicted) (LOC360860), mRNA.					
Rattus norvegicus	RefSeq	GI_62651334-S	ILMN_58402	LOC314501	XM_234622.3	XM_234622.3		314501	62651334	XM_234622.3	LOC314501	XP_234622.3	ILMN_1353073	0005550338	S	529	GAGTGGCTCTACTGCAGCCACCATTGCTCTGCATCAGGATGCAATGTCCT					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC314501), mRNA.					
Rattus norvegicus	RefSeq	GI_62659693-S	ILMN_64561	LOC362308	XM_342621.2	XM_342621.2		362308	62659693	XM_342621.2	LOC362308	XP_342622.2	ILMN_1369846	0002260333	S	865	GCTCAGAGAAGTTTGGCTTCGGATCTGTCCACGAGAAAAAGGAATCTCCC					PREDICTED: Rattus norvegicus similar to ORF1 (LOC362308), mRNA.					
Rattus norvegicus	RefSeq	GI_47576012-S	ILMN_275696	OLR1448	NM_001000019.1	NM_001000019.1		287336	47576012	NM_001000019.1	Olr1448	NP_001000019.1	ILMN_1353463	0000610673	S	432	GGTCGCCGGTGCCTGGAGCAGCAGCTCCATTAATGCTTTTGTGCATACAG	10	+	44862122-44862171	10q22	Rattus norvegicus olfactory receptor 1448 (Olr1448), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1448	Olr1448
Rattus norvegicus	RefSeq	GI_62641483-A	ILMN_283648	MRGPRD	NM_001001506.1	NM_001001506.1		293648	48040463	NM_001001506.1	Mrgprd	NP_001001506.1	ILMN_1376299	0003840671	S	903	TCAGGACGAGCCTGAAGGCAGGGAGACGCCATCCACATGTACTAATGATG	1	+	205772514-205772563	1q42	Rattus norvegicus MAS-related GPR, member D (Mrgprd), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	Mrgd; TGR7	Mrgd; TGR7
Rattus norvegicus	RefSeq	GI_62639679-S	ILMN_271054	AKT1S1_PREDICTED	XM_001078095.1	XM_001078095.1		292887	109461868	XM_001078095.1	Akt1s1_predicted	XP_001078095.1	ILMN_1348998	0006840746	S	477	GAGTCAGACCCGGAAAGCACAGATGACGGCAGCCTGAGTGAGGAGACACC				1q22	PREDICTED: Rattus norvegicus AKT1 substrate 1 (proline-rich) (predicted) (Akt1s1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659464-S	ILMN_49291	RGD1308695_PREDICTED	XM_213894.4	XM_213894.4		289088	109498010	XM_213894.4	RGD1308695_predicted	XP_213894.4	ILMN_1372435	0001740594	S	2777	CCGTCTACATGGAGGCCGCAAGCAGAGGATGGTGTGAAGGCATGCTCAAC	13	-	66243115-66243164	13q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200016B10 (predicted) (RGD1308695_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342224-S	ILMN_298808	RIC8B	NM_175598.2	NM_175598.2		314681	31342224	NM_175598.2	Ric8b	NP_783188.1	ILMN_1356922	0002480193	S	1616	CTGTCATCGAAGAGACCAGCTCGGACACAGACTGAAAGCGCCGTCACCTG	7	-	20871764-20871779:20871780-20871813	7q13	Rattus norvegicus resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) (Ric8b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence ISS]	Interacting selectively with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide [goid 1965] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.12677	ILMN_160849	RN.12677	Rn.12677		Rn.12677		50385861	CO573232			ILMN_1530340	0005900427	S	231	TCGTTCAACAATTATTAGGAGTATCTAGTTGGCTATTTGAAGGACATTAA					AGENCOURT_28619762 NIH_MGC_249 Rattus norvegicus cDNA clone IMAGE:7378598 5', mRNA					
Rattus norvegicus	RefSeq	GI_62665310	ILMN_65458	LOC498955	XM_579892.1	XM_579892.1		498955	62665310	XM_579892.1	LOC498955	XP_579892.1	ILMN_1651142	0006380070	S	328	CAGGGCAGACCACCTCTCTGAATACGACGGAAGACTTGCTGGAGACAGTG					PREDICTED: Rattus norvegicus LOC498955 (LOC498955), mRNA.					
Rattus norvegicus	Unigene	Rn.7444	ILMN_161114	PVRL2_PREDICTED	Rn.7444		Rn.7444		62639112	XM_574380	Pvrl2_predicted		ILMN_1530416	0006130021	S	1720	GCAGTTTACATCCATGTTCCTGAAATCAAGCGCACAGGGAGATCCATGTT					PREDICTED: Rattus norvegicus poliovirus receptor-related 2 (herpesvirus entry mediator B) (predicted) (Pvrl2_predicted),					
Rattus norvegicus	RefSeq	GI_62650634-S	ILMN_69508	ETV1_PREDICTED	XM_343055.3	XM_343055.3		362733	109478139	XM_343055.3	Etv1_predicted	XP_343056.3	ILMN_1373392	0003290278	S	1471	CCTGCTGAAGACGGACATGGAACGTCACATCAACGAAGAGGACACGGTGC	6	+	57761114-57761163	6q21	PREDICTED: Rattus norvegicus ets variant gene 1 (predicted) (Etv1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018615-S	ILMN_271188	CCT3	NM_199091.1	NM_199091.1		295230	40018615	NM_199091.1	Cct3	NP_954522.1	ILMN_1351771	0003130739	S	1676	GGCTGAACCACAGAACCAGCAGTCTCCCCTTTCCTGAGCCAGAGTTCCAG	2	+	180433955-180434004	2q34	Rattus norvegicus chaperonin containing Tcp1, subunit 3 (gamma) (Cct3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence ISS]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC72950	MGC72950
Rattus norvegicus	RefSeq	GI_18426851-S	ILMN_268399	CASP12	NM_130422.1	NM_130422.1		156117	18426851	NM_130422.1	Casp12	NP_569106.1	ILMN_1351562	0000360286	S	1192	TTTGAGGTCCCAGGTGAACTGACCCAGATGCCCACCATTGAGAGAGTATC	8	+	2110423-2110472	8q11	Rattus norvegicus caspase 12 (Casp12), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; The process of apoptosis in cells infected with a virus [goid 6926] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57222244-S	ILMN_263239	AER61	NM_001009502.1	NM_001009502.1		494219	57222244	NM_001009502.1	Aer61	NP_001009502.1	ILMN_1355301	0003990133	S	1968	GCCCAGCAAAGTGTTTCCTCAAGATAAGGGGCACCATCCAACTCTGGGGG	4	-	131833427-131833450:131833923-131833948	4q34	Rattus norvegicus glycosyltransferase Aer61 (Aer61), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647720-S	ILMN_272332	LOC686462	XM_001074249.1	XM_001074249.1		686462	109473843	XM_001074249.1	LOC686462	XP_001074249.1	ILMN_1353019	0003170546	S	494	GCATGGGCTTCCAGAAGACAGGCCAGCACTTTATGAGCATAACCACGAGG					PREDICTED: Rattus norvegicus similar to Camello-like 2 (LOC686462), mRNA.					
Rattus norvegicus	RefSeq	GI_62650502-S	ILMN_285551	RGD1564091_PREDICTED	XM_001074126.1	XM_001074126.1		500633	109479174	XM_001074126.1	RGD1564091_predicted	XP_001074126.1	ILMN_1351060	0002360288	S	3980	CTTCGGTTATGTGGACCAGCTCCTTCCGCCCCCTCCTCAGCAAGATGATG				6q15	PREDICTED: Rattus norvegicus similar to Kiaa0575 (predicted) (RGD1564091_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661789-S	ILMN_271162	KLHL1_PREDICTED	XM_001075413.1	XM_001075413.1		290426	109502830	XM_001075413.1	Klhl1_predicted	XP_001075413.1	ILMN_1356674	0002690075	S	2633	GAGAGGAGGTGTTGGCGTGGCCACCTGTGATGGTTTCCTTTATGCAGTGG				15q21	PREDICTED: Rattus norvegicus kelch-like 1 (Drosophila) (predicted) (Klhl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665761-S	ILMN_64849	RGD1560150_PREDICTED	XM_228043.4	XM_228043.4		309649	109509210	XM_228043.4	RGD1560150_predicted	XP_228043.4	ILMN_1363472	0001660253	S	2599	AGCCTCACGCGACAACTGCTTCGCAAGGCGGAGGGGGTAGTGCTCATGTA	20	+	7440843-7440892	20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9830134C10 gene (predicted) (RGD1560150_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655596-S	ILMN_61179	LOC497854	XM_573035.1	XM_573035.1		497854	62655596	XM_573035.1	LOC497854	XP_573035.1	ILMN_1367839	0002850739	S	1011	TCTGTGCGTAACAAGCCCTGGCTATCTTGGACTGGCTTTGTGGACCAGGC					PREDICTED: Rattus norvegicus similar to Parn protein (LOC497854), mRNA.					
Rattus norvegicus	RefSeq	GI_62653138-S	ILMN_59295	HOXC8_MAPPED	XM_347335.3	XM_347335.3		368178	109481375	XM_347335.3	Hoxc8_mapped	XP_347336.2	ILMN_1349589	0005550563	S	2280	CCCCCACTCTTTATTTGTCTGGGGGTTGGGAGGGGGAACCTGAGACACAG	7	+	141756523-141756572	7q36	PREDICTED: Rattus norvegicus homeo box C8 (mapped) (Hoxc8_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62667007-S	ILMN_297714	RGD1561997_PREDICTED	XR_008120.1	XR_008120.1		317271	109511937	XR_008120.1	RGD1561997_predicted		ILMN_1359428	0002100397	S	998	GGTCAATGGCACTGTCCCTAGTGCCTTCCCTAATCTCTATCAGTTGGCTC				Xq22	PREDICTED: Rattus norvegicus similar to Smage-1 protein (predicted) (RGD1561997_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648764-S	ILMN_266766	LOC682893	XM_001063582.1	XM_001063582.1		682893	109476287	XM_001063582.1	LOC682893	XP_001063582.1	ILMN_1352839	0004850136	S	1346	CTGGGCAGCACTTCCTGTACCTGTGTCTGAGTTCACTGTAGTTTTTGCGG					PREDICTED: Rattus norvegicus hypothetical protein LOC682893 (LOC682893), mRNA.					
Rattus norvegicus	RefSeq	GI_62654637-S	ILMN_67765	LOC501093	XM_576508.1	XM_576508.1		501093	62654637	XM_576508.1	LOC501093	XP_576508.1	ILMN_1361958	0004850519	S	859	TGCCGGTGGAGAAGACTGAACTGCCAGCATCCTCTGTGGAGACAAAATGC				9q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC501093), mRNA.					
Rattus norvegicus	RefSeq	GI_62646860-S	ILMN_293115	RGD1562387_PREDICTED	XR_007504.1	XR_007504.1		500029	109473138	XR_007504.1	RGD1562387_predicted		ILMN_1366453	0006450551	S	1318	GCTCGTCAGAAGAGAACGGAGATCTCAGAGCCCAAGAGGAAGAGGGAACA				4q21	PREDICTED: Rattus norvegicus similar to GTP-binding protein NGB (predicted) (RGD1562387_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34859826-S	ILMN_63188	TAF10_PREDICTED	XM_215028.2	XM_215028.2		293345	34859826	XM_215028.2	Taf10_predicted	XP_215028.2	ILMN_1364858	0002190112	S	593	GGACTTGACCCCTGCCCTCAGCGAGTATGGCATCAATGTGAAGAAGCCGC					PREDICTED: Rattus norvegicus TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981329-S	ILMN_283598	PAH	NM_012619.1	NM_012619.1		24616	6981329	NM_012619.1	Pah	NP_036751.1	ILMN_1362943	0005360131	S	1731	TTGGGGCTTGTGTCATTGGGGCTTCATCCGTTCATTTTTAACCTCTCAGG	7	+	24243321-24243370	7q13	Rattus norvegicus phenylalanine hydroxylase (Pah), mRNA.		The chemical reactions and pathways involving L-phenylalanine, the levorotatory isomer of 2-amino-3-phenylpropanoic acid [goid 6558] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid [goid 6559] [evidence IEA]; The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6571] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9072] [evidence IEA]; The addition of a hydroxy group to a protein amino acid [goid 18126] [evidence IDA]; The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid [goid 42558] [evidence IDA]; The chemical reactions and pathways involving tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 46146] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid [goid 6559] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin [goid 4505] [evidence IEA]; Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin [goid 4505] [evidence ISS]; Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin [goid 4505] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IDA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin [goid 4505] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576084-S	ILMN_288423	OLR1408	NM_001000785.1	NM_001000785.1		405063	47576084	NM_001000785.1	Olr1408	NP_001000785.1	ILMN_1370648	0006290148	S	398	AGTACCACACTATCATAACACCCCGGCTCTGTGTGGGGCTGGCATCCGTT	10	+	36595594-36595643	10q22	Rattus norvegicus olfactory receptor 1408 (Olr1408), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1408	Olr1408
Rattus norvegicus	RefSeq	GI_56912207-S	ILMN_66559	WDR77	NM_001008771.2	NM_001008771.2		310769	77404167	NM_001008771.2	Wdr77	NP_001008771.2	ILMN_1370553	0002680364	S	962	GTCTCCACTCAATCACTCCCTTCTTACCACAGTTGGCTGGGACCATCAGG	2	+	201215761-201215810	2q34	Rattus norvegicus WD repeat domain 77 (Wdr77), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]		RGD1310479	RGD1310479
Rattus norvegicus	RefSeq	GI_62652682-S	ILMN_269811	RPL8	NM_001034916.2	NM_001034916.2		26962	78214308	NM_001034916.2	Rpl8	NP_001030088.2	ILMN_1369431	0003390037	S	675	GGTAACCACCAGCACATTGGCAAGCCTTCCACTATCCGAAGAGATGCCCC	7	+	114956194-114956243	7q34	Rattus norvegicus ribosomal protein L8 (Rpl8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]	MGC124745; MGC156485	MGC124745; MGC156485
Rattus norvegicus	RefSeq	GI_62646286	ILMN_266750	RGD1304782_PREDICTED	XM_001067861.1	XM_001067861.1		311591	109471207	XM_001067861.1	RGD1304782_predicted	XP_001067861.1	ILMN_1651080	0006110609	S	1286	ATTCAGAGCTTGCCGGACCTCTCACTGCTGCCTAATGTCACAGGGGGCCT				3q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610304G08 gene (predicted) (RGD1304782_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090388-S	ILMN_300695	RGD1359616	NM_001007663.1	NM_001007663.1		300782	56090388	NM_001007663.1	RGD1359616	NP_001007664.1	ILMN_1374510	0001090086	S	1980	CCTTCAGCACCCCTCCTGAGAAGCTGGACAGACAGGAGAGAGCTCAGGAA	8	+	69242751-69242800	8q24	Rattus norvegicus similar to 2010321M09Rik protein (RGD1359616), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			MGC94254	MGC94254
Rattus norvegicus	RefSeq	GI_47576176-S	ILMN_285235	OLR1356	NM_001000493.1	NM_001000493.1		302954	47576176	NM_001000493.1	Olr1356	NP_001000493.1	ILMN_1350218	0004850050	S	883	AAAGAAGTGAAGGGGGCCCTGGGAAGACTGCTGGGGAAAGGAAGAGGAGC	10	-	11951300-11951349	10q12	Rattus norvegicus olfactory receptor 1356 (Olr1356), mRNA.	The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or2c1	Or2c1
Rattus norvegicus	RefSeq	GI_57528389-S	ILMN_267415	ASPHD2	NM_001009716.1	NM_001009716.1		364948	57528389	NM_001009716.1	Asphd2	NP_001009716.1	ILMN_1359597	0006450541	S	1667	GCATGAATGGCTTCCTGTCACTGCGGGGCATCTTTCCTTTGGTTACTGGG	19	-	14362246-14362295	19p11	Rattus norvegicus aspartate beta-hydroxylase domain containing 2 (Asphd2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IEA]	The alteration of an amino acid residue in a peptide [goid 18193] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: peptide L-aspartate + 2-oxoglutarate + O2 = peptide 3-hydroxy-L-aspartate + succinate + CO2 [goid 4597] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]	RGD1306020; MGC105590	RGD1306020; MGC105590
Rattus norvegicus	RefSeq	GI_62654059-S	ILMN_289929	RGD1305534_PREDICTED	XM_001062758.1	XM_001062758.1		315864	109485053	XM_001062758.1	RGD1305534_predicted	XP_001062758.1	ILMN_1373622	0004920079	S	7422	AGGACACTCAGGGAGCCCCATCCTCTACTCAAACTCCTTCCCAAGCAAGG				8q31	PREDICTED: Rattus norvegicus similar to dJ202D23.2 (novel protein similar to C21ORF5 (KIAA0933)) (predicted) (RGD1305534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654061-S	ILMN_289929	RGD1305534_PREDICTED	XM_001062758.1	XM_001062758.1		315864	109485053	XM_001062758.1	RGD1305534_predicted	XP_001062758.1	ILMN_1350532	0005890600	S	8115	TTCTCGGCATCAGAGCTGGCAGGTGGCCCATCCTTCTGTGCACTGGACAA				8q31	PREDICTED: Rattus norvegicus similar to dJ202D23.2 (novel protein similar to C21ORF5 (KIAA0933)) (predicted) (RGD1305534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648888-S	ILMN_276186	TLN1	XM_001069865.1	XM_001069865.1		313494	109476400	XM_001069865.1	Tln1	XP_001069865.1	ILMN_1361675	0006130152	S	8095	CAGCAGCTTCCAGCCAATCCCCACAGCCACAGCAGCTCAACTCATCCCTT				5q22	PREDICTED: Rattus norvegicus talin 1 (Tln1), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate [goid 7044] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate [goid 7044] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence IEA]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence ISS]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence IEA]; Interacting selectively with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions [goid 30274] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643751-S	ILMN_63111	UBQLN4_PREDICTED	XM_227405.4	XM_227405.4		310633	109465064	XM_227405.4	Ubqln4_predicted	XP_227405.2	ILMN_1369123	0001660577	S	2030	AGGGTGACTGCCGAGGCCTGTGCCCAACCCATAGCTCTGTCCAAGGATTT	2	+	180683452-180683501	2q34	PREDICTED: Rattus norvegicus ubiquilin 4 (predicted) (Ubqln4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_70912373	ILMN_287906	FAM58B	NM_001025412.1	NM_001025412.1		303321	70912373	NM_001025412.1	Fam58b	NP_001020583.1	ILMN_1530508	0000460079	S	1075	CACCCTTAGGAGAAGTATGAATGTGTAACATAGAATCTTATTTTGTATAA	10	-	64864981-64865030	10q25	Rattus norvegicus family with sequence similarity 58, member B (Fam58b), mRNA.					
Rattus norvegicus	RefSeq	GI_62656602-S	ILMN_287906	FAM58B	NM_001025412.1	NM_001025412.1		303321	70912373	NM_001025412.1	Fam58b	NP_001020583.1	ILMN_1368106	0004560408	S	839	GGCATGTCTACACTCGGAGGACTGGTTGTGCTGGCAGAGGATGTCACTGG	10	-	64865217-64865266	10q25	Rattus norvegicus family with sequence similarity 58, member B (Fam58b), mRNA.					
Rattus norvegicus	RefSeq	GI_62652807-S	ILMN_64897	LOC500908	XM_576314.1	XM_576314.1		500908	62652807	XM_576314.1	LOC500908	XP_576314.1	ILMN_1356473	0002480463	S	4462	AGGCACCTGAGAAGTCGAAGGGGGCACCACAAAACCCAGCCGTCTCTCAA					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23584 (LOC500908), mRNA.					
Rattus norvegicus	RefSeq	GI_17105355-S	ILMN_302757	GPR37	NM_057201.1	NM_057201.1		117549	17105355	NM_057201.1	Gpr37	NP_476549.1	ILMN_1349606	0005340403	S	2537	CCTCTGTGGGGACTCACTGCTGAAGGAACGGCTTGGTTAGCTCAGATTCC	4	-	52167415-52167445:52167446-52167464	4q22	Rattus norvegicus G protein-coupled receptor 37 (Gpr37), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ednrbl; MGC105347	Ednrbl; MGC105347
Rattus norvegicus	RefSeq	GI_57977309-S	ILMN_268238	PIP5K1C_PREDICTED	NM_001009967.1	NM_001009967.1		314641	57977309	NM_001009967.1	Pip5k1c_predicted	NP_001009967.1	ILMN_1365757	0002970519	S	1881	AGATGCGCCTTCCACAGACATCTATTTTTTCGCCCACGGGAGATACTGGC	7	-	9885853-9885875:9886658-9886684	7q11	Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted) (Pip5k1c_predicted), mRNA.				Pip5k1c; MGC124518	Pip5k1c; MGC124518
Rattus norvegicus	RefSeq	GI_47578086-S	ILMN_285387	OLR592	NM_001000330.1	NM_001000330.1		295824	47578086	NM_001000330.1	Olr592	NP_001000330.1	ILMN_1370920	0002680184	S	426	CTCAAAAAAGTGCACTCAGCTTGCAGCAGGCTCCTGGATCAGTGGCATTC	3	+	71598875-71598924	3q24	Rattus norvegicus olfactory receptor 592 (Olr592), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr592; ratchr3-71494822-71495757_ORF	Olr592; ratchr3-71494822-71495757_ORF
Rattus norvegicus	RefSeq	GI_56605717-S	ILMN_273753	RHOJ	NM_001008320.1	NM_001008320.1		299145	56605717	NM_001008320.1	Rhoj	NP_001008321.1	ILMN_1364613	0006900563	S	1722	TAGAGCAAAGCTATCTTCCCACTGCAGGAGAGTGAGCCTGACCCACCCTG	6	+	97995747-97995796	6q24	Rattus norvegicus ras homolog gene family, member J (Rhoj), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC106003	MGC106003
Rattus norvegicus	RefSeq	GI_62656733-S	ILMN_65786	LOC497976	XM_573171.1	XM_573171.1		497976	62656733	XM_573171.1	LOC497976	XP_573171.1	ILMN_1366425	0001500102	S	825	CGTCATGACCTCGATGATCTTTTCCTTCGGGAAAGCTGGGGACATGCTGC				10q26	PREDICTED: Rattus norvegicus similar to RAD51L2/RAD51C protein (LOC497976), mRNA.					
Rattus norvegicus	RefSeq	GI_62667307	ILMN_55415	LOC501629	XM_577027.1	XM_577027.1		501629	62667307	XM_577027.1	LOC501629	XP_577027.1	ILMN_1650811	0004730520	S	426	ACTTGGAAGAAAGAGGAAGGAGGTAGAATGTAAAGAGGGCGAATGAACGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501629), mRNA.					
Rattus norvegicus	RefSeq	GI_62646288-S	ILMN_54265	LOC296323	XM_230802.3	XM_230802.3		296323	62646288	XM_230802.3	LOC296323	XP_230802.3	ILMN_1366145	0002030372	S	2738	CCCACATCTCCACCTCCAGACTCCCAAAGTGGCAACAATCCAGGTCCCAG				3q42	PREDICTED: Rattus norvegicus similar to C20orf95 (LOC296323), mRNA.					
Rattus norvegicus	RefSeq	GI_58865987-A	ILMN_292953	PHLDA3	NM_001012206.1	NM_001012206.1		363989	58865987	NM_001012206.1	Phlda3	NP_001012206.1	ILMN_1376787	0002850133	S	1188	GGCTGGAGGCCTGTGCCTGGGGGTCTCTTGCTGCTTAGGTCCTTTTGGGA	13	+	48793777-48793826	13q13	Rattus norvegicus pleckstrin homology-like domain, family A, member 3 (Phlda3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651251-S	ILMN_54363	LOC500721	XM_580114.1	XM_580114.1		500721	62651251	XM_580114.1	LOC500721	XP_580114.1	ILMN_1366540	0004280047	S	528	GGAGTCTGAGGTCCACATCATAATCTATGCACTGCATGCTGGGATCCTGG					PREDICTED: Rattus norvegicus LOC500721 (LOC500721), mRNA.					
Rattus norvegicus	RefSeq	GI_62642252	ILMN_55629	PYCS_PREDICTED	XM_342048.3	XM_342048.3		361755	109460070	XM_342048.3	Pycs_predicted	XP_342049.3	ILMN_1649739	0002850647	S	2678	TCCGGCCTCCTTGTGTGTGTCTGTCTCTGTTACTGGGGCTGAATCTGGGG	1	-	245686655-245686704	1q54	PREDICTED: Rattus norvegicus pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) (predicted) (Pycs_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543040-S	ILMN_285826	KCNS3	NM_031778.2	NM_031778.2		83588	31543040	NM_031778.2	Kcns3	NP_113966.2	ILMN_1354516	0006380400	S	2178	ATAAATTACTGATGTTAGAGCAGAGGCCCAGCCGACCGAAGACGACATGC	6	-	34534617-34534666	6q14	Rattus norvegicus potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 (Kcns3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660142-S	ILMN_287351	RGD1311361	XM_001061440.1	XM_001061440.1		305171	109500267	XM_001061440.1	RGD1311361	XP_001061440.1	ILMN_1374210	0006660528	S	4320	CCGTCCCTTTCCTTCTGTGCGGTTCTAACTGAAGGACGTTTGTGTCAGGC				14p22	PREDICTED: Rattus norvegicus similar to hypothetical protein (RGD1311361), mRNA.					
Rattus norvegicus	RefSeq	GI_62656871-S	ILMN_51461	LOC497984	XM_573180.1	XM_573180.1		497984	62656871	XM_573180.1	LOC497984	XP_573180.1	ILMN_1374485	0003710372	S	2842	ACATCCGTACAACTCAAAGGTGCTTCTGAGACTGGATGTATCTGAGCGGC				10q31	PREDICTED: Rattus norvegicus similar to zinc finger protein 652 (LOC497984), mRNA.					
Rattus norvegicus	RefSeq	GI_62658737-I	ILMN_267432	HIP1	XM_001071106.1	XM_001071106.1		192154	109497085	XM_001071106.1	Hip1	XP_001071106.1	ILMN_1375389	0003060064	S	3443	CCTTAGGGAGGCGTCTTGTCTCACTGGGAGCTTGGAGAGGGGACATCTTA				12q12	PREDICTED: Rattus norvegicus huntingtin interacting protein 1, transcript variant 2 (Hip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes [goid 30118] [evidence TAS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence ISS]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IDA]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence ISS]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IDA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658737-A	ILMN_267432	HIP1	XM_001071106.1	XM_001071106.1		192154	109497085	XM_001071106.1	Hip1	XP_001071106.1	ILMN_1376352	0002850593	S	3064	ACGAGCTGGCTGGTGTTGCTGAGGGCTGGGAAGAAGGGACAGAAGCATCA				12q12	PREDICTED: Rattus norvegicus huntingtin interacting protein 1, transcript variant 2 (Hip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes [goid 30118] [evidence TAS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence ISS]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IDA]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence ISS]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IDA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54312095-S	ILMN_294994	PRG-4	NM_001005881.1	NM_001005881.1		300443	54312095	NM_001005881.1	Prg-4	NP_001005881.1	ILMN_1363402	0005720441	S	1113	TTTCTGACGGGAGCAGCCATCGCCACCTTTTTGGTCACCTGTGTTGTGCA	8	+	21047354-21047388:21049448-21049462	8q13	Rattus norvegicus plasticity-related gene 4 (Prg-4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646422-S	ILMN_277315	LOC686154	XM_001072675.1	XM_001072675.1		686154	109471336	XM_001072675.1	LOC686154	XP_001072675.1	ILMN_1367455	0006380280	S	887	TGGGAGAGACCTTACGAGTGTCAGGAATGTGGGCGGACCTACTGCCGGAA					PREDICTED: Rattus norvegicus similar to zinc finger protein 334 (LOC686154), mRNA.					
Rattus norvegicus	RefSeq	GI_40786486-S	ILMN_285479	GPR108	NM_199399.1	NM_199399.1		316136	40786486	NM_199399.1	Gpr108	NP_955431.1	ILMN_1374780	0001690035	S	1816	TGTGCAGGGAGTCCAAGAGGAAGCTGCTCACAGGGCACCAGGGCATGGAT	Un|NW_047936.1	-	114758-114807		Rattus norvegicus G protein-coupled receptor 108 (Gpr108), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_51948445-S	ILMN_277041	FSCN3	NM_001004232.1	NM_001004232.1		296947	51948445	NM_001004232.1	Fscn3	NP_001004232.1	ILMN_1370712	0004070576	S	1501	TGCTGGCACCCAATGGCTTCTACCTCCGAGCTGACCGAAGTGGCACACTA	4	+	55305527-55305576	4q22	Rattus norvegicus fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) (Fscn3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]	Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence TAS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]	MGC94950	MGC94950
Rattus norvegicus	RefSeq	GI_62657177-S	ILMN_286388	PRP-2	XM_001081963.1	XM_001081963.1		287750	109489143	XM_001081963.1	PRP-2	XP_001081963.1	ILMN_1355294	0001660008	S	674	CTCCCATATCTTCTCCTCCTTGGAAAGGGCTCAGCAACCTCCAAAATCCC	10	-	92760782-92760831	10q32.1	PREDICTED: Rattus norvegicus proline-rich protein (PRP-2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663417-S	ILMN_53336	TCFAP2A_PREDICTED	XM_225238.4	XM_225238.4		306862	109504828	XM_225238.4	Tcfap2a_predicted	XP_225238.4	ILMN_1356465	0000380524	S	2888	CTGGTGATCTCGTTTACCTCCTTGTTTAGTGGGCTTTGGATCGATCGTCC	17	+	30032181-30032230	17p12	PREDICTED: Rattus norvegicus transcription factor AP-2, alpha (predicted) (Tcfap2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758373-S	ILMN_287723	LOC680847	XR_005890.1	XR_005890.1		680847	109457753	XR_005890.1	LOC680847		ILMN_1357012	0004050215	I	637	GGATACCTATCACGGTGGAACTGCTCTGTTCTCTAGTTGATGGTTGCCTG	1	-	42826415-42826464	1q11	PREDICTED: Rattus norvegicus similar to Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) (PPAR-interacting protein 4) (PIP4) (LOC680847), mRNA.					
Rattus norvegicus	RefSeq	GI_62638594	ILMN_287723	LOC680847	XR_005890.1	XR_005890.1		680847	109457753	XR_005890.1	LOC680847		ILMN_1649783	0003940541	A	431	AAGGTGACCGGATCGCGCAGCTCATTTGGGAGCGGATTCTTTATCCAGAC	1	-	42826621-42826670	1q11	PREDICTED: Rattus norvegicus similar to Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) (PPAR-interacting protein 4) (PIP4) (LOC680847), mRNA.					
Rattus norvegicus	RefSeq	GI_62656335-S	ILMN_267120	GPS2_PREDICTED	XM_001079248.1	XM_001079248.1		303248	109491120	XM_001079248.1	Gps2_predicted	XP_001079248.1	ILMN_1374555	0003290066	S	4951	CCTTCATGCACTGACTTGGGGAACATGACTCCCTATTATTACCCTCCCCC				10q24	PREDICTED: Rattus norvegicus G protein pathway suppressor 2 (predicted) (Gps2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645048-S	ILMN_267664	GOLGA1_PREDICTED	XM_001060893.1	XM_001060893.1		311919	109469842	XM_001060893.1	Golga1_predicted	XP_001060893.1	ILMN_1358549	0000460333	S	2644	CCATGGTCCTAGACCCACCCAAGGATAGAGCTACGTGGGCTGACACTCTT				3q11	PREDICTED: Rattus norvegicus golgi autoantigen, golgin subfamily a, 1 (predicted) (Golga1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645705-S	ILMN_48943	LOC502641	XM_578136.1	XM_578136.1		502641	62645705	XM_578136.1	LOC502641	XP_578136.1	ILMN_1359179	0003390239	S	647	CTGTGACACTGCAAAGGAAATGCTTCCACATCCCATGAACCCACATCCTC					PREDICTED: Rattus norvegicus similar to SLC25A5 protein (LOC502641), mRNA.					
Rattus norvegicus	RefSeq	GI_16758877-S	ILMN_266146	ARFRP1	NM_053980.1	NM_053980.1		117051	16758877	NM_053980.1	Arfrp1	NP_446432.1	ILMN_1372031	0001090292	S	699	GTACGGAATGTTCACCGGCCACCACGGCAGAGGGACATCACATAAGCACC	3	-	170499771-170499777:170499778-170499820	3q43	Rattus norvegicus ADP-ribosylation factor related protein 1 (Arfrp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm [goid 7369] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm [goid 7369] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655248-S	ILMN_52302	RGD1306073_PREDICTED	XM_343599.3	XM_343599.3		363259	109486191	XM_343599.3	RGD1306073_predicted	XP_343600.3	ILMN_1352647	0003870041	S	4733	AGGAAGGCCAGGATGTGTACCTTGAGGTGGAGACAGGCCGAGTAGGTGCA	9	-	74765793-74765842	9q33	PREDICTED: Rattus norvegicus similar to sallimus CG1915-PC (predicted) (RGD1306073_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577320-S	ILMN_289419	OLR416	NM_001000387.1	NM_001000387.1		296678	47577320	NM_001000387.1	Olr416	NP_001000387.1	ILMN_1373597	0004570451	S	649	GTCCACATTGTATTTGCCGTTCTTAGGATCCAGTCTTCTGGTGGGAGTTC	3	-	16409469-16409518	3q11	Rattus norvegicus olfactory receptor 416 (Olr416), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr416; TB 334	Olr416; TB 334
Rattus norvegicus	RefSeq	GI_62645978-S	ILMN_284246	RIN2_PREDICTED	XM_001054910.1	XM_001054910.1		311494	109470939	XM_001054910.1	Rin2_predicted	XP_001054910.1	ILMN_1356700	0001850288	S	2825	CTGGCTGCCGCCTGTTTGAGCTTAGAAGACAGCCACCTCCTCAAGGATCC				3q41	PREDICTED: Rattus norvegicus Ras and Rab interactor 2 (predicted) (Rin2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655289-S	ILMN_266394	LOC363267	NM_001025025.1	NM_001025025.1		363267	68163492	NM_001025025.1	LOC363267	NP_001020196.1	ILMN_1372870	0005050091	S	1326	TCAAGACCTTGAACCTCCAGAGAACAAGCGAGCCCATTTCCTCTGCCTCC	9	+	82536264-82536313	9q34	Rattus norvegicus hypothetical protein LOC363267 (LOC363267), mRNA.				MGC108965	MGC108965
Rattus norvegicus	RefSeq	GI_62646006-S	ILMN_63720	LOC362232	XM_342539.2	XM_342539.2		362232	62646006	XM_342539.2	LOC362232	XP_342540.2	ILMN_1364564	0005360088	S	313	TATCATTGCCTGGAAGAATCAGATGCAGGAAGTTCCTGTCTAATCTGGGC				3q41	PREDICTED: Rattus norvegicus similar to ventral prostate-specific protein (LOC362232), mRNA.					
Rattus norvegicus	RefSeq	GI_62653224	ILMN_64978	RGD1564081_PREDICTED	XM_576354.2	XM_576354.2		500943	109483059	XM_576354.2	RGD1564081_predicted	XP_576354.2	ILMN_1650927	0004570471	S	1449	CAAGTCAGACGACCAAAACTACAGGGTGGAGGCTGTCCATGCACTGGTGC	8	-	5886197-5886245:5889330-5889330	8q11	PREDICTED: Rattus norvegicus similar to novel protein similar to human oligophrenin 1 (OPHN1) (predicted) (RGD1564081_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34853727-S	ILMN_50890	LOC362299	XM_347040.1	XM_347040.1		362299	34853727	XM_347040.1	LOC362299	XP_347041.1	ILMN_1365333	0007000739	S	328	CCCGTGGCGGGGATCTACAGGAGGTGGTGAGTCTCGACAGACATGAAGAA					PREDICTED: Rattus norvegicus hypothetical LOC362299 (LOC362299), mRNA.					
Rattus norvegicus	RefSeq	GI_31341305-S	ILMN_293027	RTN4RL2	NM_181380.2	NM_181380.2		311169	31341305	NM_181380.2	Rtn4rl2	NP_852045.1	ILMN_1370961	0006110278	S	677	GCGCAGCCTTCCACGGTCTCAGCCGCCTCACCATCCTTTACCTGTTCAAC	3	-	68099012-68099061	3q24	Rattus norvegicus reticulon 4 receptor-like 2 (Rtn4rl2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence ISS]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence ISS]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ngrh1	Ngrh1
Rattus norvegicus	RefSeq	GI_27690675-S	ILMN_64383	RGD1305052_PREDICTED	XM_221142.4	XM_221142.4		303698	109489438	XM_221142.4	RGD1305052_predicted	XP_221142.4	ILMN_2040197	0006840386	S	1739	AGTTCTACAGTGAAGTGTGCAGCCTGGGGCAACAGGATCGGGTCCAGCTC	10	+	107997201-107997250	10q32.3	PREDICTED: Rattus norvegicus similar to phosphatidylglycerophosphate synthase (predicted) (RGD1305052_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32189317-S	ILMN_269493	KLRE1	NM_181372.1	NM_181372.1		297645	32189317	NM_181372.1	Klre1	NP_852037.1	ILMN_1372191	0005690242	S	539	GAAACCAGCAAACAGTGGCTGTGGGACGACCATTCAGTTCTACCCAGTGG	4	+	166863126-166863175	4q42	Rattus norvegicus killer cell lectin-like receptor, family E, member 1 (Klre1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation [goid 2223] [evidence ISS]; The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor [goid 30101] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity [goid 45954] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein phosphatase [goid 19903] [evidence IPI]; A receptor found on the surface of natural killer cells which binds Class I MHC antigens and is required for activation of NK activity. It belongs to the Ly49i family [goid 45233] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]		
Rattus norvegicus	RefSeq	Rn.35882	ILMN_270161	RGD1305689	NM_001008297.1	NM_001008297.1		290529	56605635	NM_001008297.1	RGD1305689	NP_001008298.1	ILMN_1530378	0005670706	S	543	ATCCTGTTTGCTTACAGACCAAAGCACCAAAAACATAATTAAAGGAGAAA	16	-	1542837-1542845:1542846-1542886	16p16	Rattus norvegicus similar to DNA segment, Chr 14, ERATO Doi 449, expressed (RGD1305689), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105674	MGC105674
Rattus norvegicus	RefSeq	GI_56605635-S	ILMN_270161	RGD1305689	NM_001008297.1	NM_001008297.1		290529	56605635	NM_001008297.1	RGD1305689	NP_001008298.1	ILMN_1358763	0006420433	S	1008	GCTCAAGTCTGACCAGTGTGAAACGGTCTCCTCTTGGCTGCCTCAAGATC	16	-	1542372-1542421	16p16	Rattus norvegicus similar to DNA segment, Chr 14, ERATO Doi 449, expressed (RGD1305689), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105674	MGC105674
Rattus norvegicus	RefSeq	GI_27465562-S	ILMN_281531	DPY30	NM_173117.1	NM_173117.1		286897	27465562	NM_173117.1	Dpy30	NP_775140.1	ILMN_1366643	0002320279	S	497	CGAGGCAGCTTTTGTTGCCATGATTCCCCTCCTCACTCTGGAAGTCTAAG	6	+	21104509-21104558	6q13	Rattus norvegicus dpy-30 homolog (C. elegans) (Dpy30), mRNA.			Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665199-S	ILMN_59750	LOC292116	XM_214728.2	XM_214728.2		292116	62665199	XM_214728.2	LOC292116	XP_214728.2	ILMN_1352950	0004210452	S	2595	CTAGGCCCTGTTAAGGTCTGGTTTGAGAGGACGAGGATGCCCCAAGTAGC					PREDICTED: Rattus norvegicus similar to arginine N-methyltransferase p82 isoform (predicted) (LOC292116), mRNA.					
Rattus norvegicus	RefSeq	GI_39725641-S	ILMN_287977	HSPA2	NM_021863.2	NM_021863.2		60460	39725641	NM_021863.2	Hspa2	NP_068635.1	ILMN_1366663	0001690519	S	1981	TCTGGAGGACCCACCATTGAGGAAGTGGACTAGGCTTGCGCTGGAGTCCG	6	+	99002526-99002558:99002559-99002575	6q24	Rattus norvegicus heat shock protein 2 (Hspa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC93458; Hspt70; Hst70	MGC93458; Hspt70; Hst70
Rattus norvegicus	RefSeq	GI_13242309-A	ILMN_287295	ABI1	NM_024397.1	NM_024397.1		79249	13242309	NM_024397.1	Abi1	NP_077373.1	ILMN_1376905	0005670390	S	1021	GACTCCACAGATACCTCTCACAGGCTTCGTGGCCAGGGTGCAGGAAAACA				17q12.3	Rattus norvegicus abl-interactor 1 (Abi1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			E3b1	E3b1
Rattus norvegicus	RefSeq	GI_13540623-S	ILMN_270523	GRK5	NM_030829.1	NM_030829.1		59075	13540623	NM_030829.1	Grk5	NP_110456.1	ILMN_1369649	0004060717	S	2130	TTTCCACTCAGGTCTGTTTTCCAAGGTGGCCCCAAGCTGGGGTGGACTAG	1	+	267692966-267693015	1q55	Rattus norvegicus G protein-coupled receptor kinase 5 (Grk5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor [goid 7217] [evidence ISS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence TAS]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93405; Grk5	MGC93405; Grk5
Rattus norvegicus	RefSeq	GI_62641960-S	ILMN_266101	TRPM5_PREDICTED	XM_001065110.1	XM_001065110.1		365391	109463237	XM_001065110.1	Trpm5_predicted	XP_001065110.1	ILMN_1369731	0004730112	S	3197	CCTGGAGAGAGACTTGCCTGACCCCGTGGACCAGAAGATCATTACCTGGG				1q41	PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 5 (predicted) (Trpm5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646759-S	ILMN_57206	RGD1564345_PREDICTED	XM_575348.2	XM_575348.2		499993	109471665	XM_575348.2	RGD1564345_predicted	XP_575348.1	ILMN_1357168	0006290537	S	560	GTACCTAGATGACGACACGCAGTCGCAGTCCGTAGAGGAAGTCACCACAG	4	-	23266819-23266868	4q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921511H03 (predicted) (RGD1564345_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663468-S	ILMN_56792	RIPK1_PREDICTED	XM_225262.4	XM_225262.4		306886	109504855	XM_225262.4	Ripk1_predicted	XP_225262.4	ILMN_1350981	0005860025	S	1660	GAGTCAACTTCCAGGCATCAAGCCGTCTTCGCTAACACCACTAGCCTGAC	17	-	37186049-37186068:37188394-37188423	17p12	PREDICTED: Rattus norvegicus receptor (TNFRSF)-interacting serine-threonine kinase 1 (predicted) (Ripk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978536-S	ILMN_287949	ARRB1	NM_012910.1	NM_012910.1		25387	6978536	NM_012910.1	Arrb1	NP_037042.1	ILMN_1355033	0000510338	S	1032	GGCCTGTTGGGAGACCTTGCATCCAGTGATGTGGCTGTGGAACTGCCCTT	1	+	156932488-156932488:156933432-156933455:156935032-156935056	1q32	Rattus norvegicus arrestin, beta 1 (Arrb1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence TAS]; The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 7600] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30817] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30820] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach) [goid 50975] [evidence TAS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence TAS]	1; BARRES	1; BARRES
Rattus norvegicus	RefSeq	GI_62656382-S	ILMN_289119	RGD1562673_PREDICTED	XM_001054051.1	XM_001054051.1		363551	109490285	XM_001054051.1	RGD1562673_predicted	XP_001054051.1	ILMN_1374075	0004060100	S	451	GTTAATACAAAGGACTTGAAGGCCACCGAGCCTCCGAGAGAGCCAGTGGG				10q12	PREDICTED: Rattus norvegicus similar to Prostatic spermine-binding protein precursor (SBP) (predicted) (RGD1562673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012421-S	ILMN_276775	RT1-CE3	XM_001068045.1	XM_001068045.1		414793	109521723	XM_001068045.1	RT1-CE3	XP_001068045.1	ILMN_1355351	0004060750	S	575	CAACAGGACGGATGACACAGAGCAAGTGGGTTCAGGCTGGTGTTGCAGAC				20p12	PREDICTED: Rattus norvegicus RT1 class I, CE3 (RT1-CE3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62644268-S	ILMN_67394	ABCA4_PREDICTED	XM_241525.4	XM_241525.4		310836	109465443	XM_241525.4	Abca4_predicted	XP_241525.3	ILMN_1356772	0002230037	S	7042	ATTCACCGGCTCACCCGAACTCCCGATGGCAAAACTGGAACACAGTCACC	2	+	218849709-218849758	2q41	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 4 (predicted) (Abca4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090637-S	ILMN_282387	MIOX	NM_145771.2	NM_145771.2		252899	56090637	NM_145771.2	Miox	NP_665714.2	ILMN_2039045	0006350437	S	685	ACCGGCGGTGACTACCGGCAGCTGTGCAGTCAGCAAGACCTGGATATGCT	7	+	127634511-127634560	7q34	Rattus norvegicus myo-inositol oxygenase (Miox), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Intracellular foci at which aggregated proteins have been sequestered [goid 16234] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms [goid 19310] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence ISS]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16651] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16651] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: myo-inositol + O2 = D-glucuronate + H2O [goid 50113] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]	Aldrl6; RSOR	Aldrl6; RSOR
Rattus norvegicus	RefSeq	GI_62638880-S	ILMN_295408	RGD1563268_PREDICTED	XM_001071463.1	XM_001071463.1		499073	109461186	XM_001071463.1	RGD1563268_predicted	XP_001071463.1	ILMN_1369330	0006200400	S	2091	TCCTAGCCGTCGGTTCAAGCGTGTGGTAGAGACCATCCAGGCACAGTTGC				1q12	PREDICTED: Rattus norvegicus similar to Probable serine/threonine-protein kinase KIAA1811 (predicted) (RGD1563268_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662618-S	ILMN_288681	RGD1563462_PREDICTED	XR_007559.1	XR_007559.1		312544	109514071	XR_007559.1	RGD1563462_predicted		ILMN_1358901	0006980097	S	677	CCAGGATATCATCCCTGAATTTACTGGTGTTCCCAAGGCTGTGGGCCAGG				16p11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1563462_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929103-S	ILMN_266088	APBA3	NM_031781.1	NM_031781.1		83611	13929103	NM_031781.1	Apba3	NP_113969.1	ILMN_1363913	0002370102	S	1673	TGGCCATGCCCCACGCGCGCATTATCCAGCTGCTCACAGAGACAAGAGAA	7	-	9930240-9930240:9930327-9930375	7q11	Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, member 3 (Apba3), mRNA.		The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Mint3	Mint3
Rattus norvegicus	RefSeq	GI_62657646-S	ILMN_279813	ITSN1	XM_001069789.1	XM_001069789.1		29491	109493905	XM_001069789.1	Itsn1	XP_001069789.1	ILMN_1352431	0004610195	S	5437	AGCAACAGGGACGGCAGACGAAGCCCCTCGAGGCTGTGAGGAGTTGTTTT				11q11	PREDICTED: Rattus norvegicus intersectin 1 (Itsn1), mRNA.	A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090288-S	ILMN_289776	PELO	NM_001007634.1	NM_001007634.1		294754	56090288	NM_001007634.1	Pelo	NP_001007635.1	ILMN_2039303	0005050328	S	1138	GGTATGTCAGGCTGGTGGACAGTGTGAAAGAGAATGCGGGCACCGTAAGG	2	-	45901014-45901063	2q14	Rattus norvegicus pelota homolog (Drosophila) (Pelo), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; A process that is carried out at the cellular level that results in the formation, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information [goid 51276] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94455	MGC94455
Rattus norvegicus	RefSeq	GI_62659287-S	ILMN_270094	SLC26A9_PREDICTED	XM_001059250.1	XM_001059250.1		304784	109498602	XM_001059250.1	Slc26a9_predicted	XP_001059250.1	ILMN_2038906	0003060379	S	2095	CTCTCATCCTTGACATGAGTGGAGTCAGCTTTGTGGACCTGATGGGCATC				13q13	PREDICTED: Rattus norvegicus solute carrier family 26, member 9 (predicted) (Slc26a9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164120-S	ILMN_288245	PASK	NM_001009362.1	NM_001009362.1		301617	57164120	NM_001009362.1	Pask	NP_001009362.1	ILMN_1363607	0006020039	S	4219	GGAGGCTCCTGGTAACCACTGCTTGCATCTTGAGGATCCCTCGTCACCAG	9	-	92582441-92582490	9q36	Rattus norvegicus PAS domain containing serine/threonine kinase (Pask), mRNA.		Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC93882	MGC93882
Rattus norvegicus	RefSeq	GI_62664560-S	ILMN_64403	MPPE1_PREDICTED	XM_341627.3	XM_341627.3		361344	109506728	XM_341627.3	Mppe1_predicted	XP_341628.3	ILMN_1372903	0005860097	S	1466	CTCTACCACTTGCACACATGACACACAGGAAGGGACCGGCAGCTTTGGTG	18	-	63738456-63738505	18q12.1	PREDICTED: Rattus norvegicus metallophosphoesterase 1 (predicted) (Mppe1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654053-S	ILMN_289594	IBTK_PREDICTED	XM_001062352.1	XM_001062352.1		315858	109485049	XM_001062352.1	Ibtk_predicted	XP_001062352.1	ILMN_1356507	0002350100	S	3040	GGTGGCACTGGCTGAAAACCTTACCCTTAAGAATGCTGCTATGCTGCTGG				8q31	PREDICTED: Rattus norvegicus inhibitor of Bruton agammaglobulinemia tyrosine kinase (predicted) (Ibtk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34864365-S	ILMN_285569	LYSMD2_PREDICTED	XM_001059473.1	XM_001059473.1		300839	109485003	XM_001059473.1	Lysmd2_predicted	XP_001059473.1	ILMN_1359584	0001570358	S	1342	GTGCAGGCTGACCTTGAACTCACTGTGTATCTGAGAATGACCTTGAACTC				8q24	PREDICTED: Rattus norvegicus LysM, putative peptidoglycan-binding, domain containing 2 (predicted) (Lysmd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665756-S	ILMN_291934	MTCH1	XM_001078709.1	XM_001078709.1		294313	109509866	XM_001078709.1	Mtch1	XP_001078709.1	ILMN_1350984	0002510148	S	1519	CGGGGGCTGGCGTTGCTGCGTTCTGCCCTTGTTCTCAACACTACTTTCCT				20p12	PREDICTED: Rattus norvegicus mitochondrial carrier homolog 1 (C. elegans) (Mtch1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164008-A	ILMN_282292	ZFP297	NM_001009172.2	NM_001009172.2		309630	65301492	NM_001009172.2	Zfp297	NP_001009172.1	ILMN_1376847	0000730273	S	2332	CTGGAGTCGCAGGGCCAACAGTCAGGTTGTGCTAATTTGTGCCTGAAGTC	20	-	5118285-5118334	20p12	Rattus norvegicus zinc finger protein 297 (Zfp297), mRNA.				Znf297; Bing1	Znf297; Bing1
Rattus norvegicus	RefSeq	GI_62656079-S	ILMN_70303	RAPGEF6_PREDICTED	XM_220428.4	XM_220428.4		303141	109488106	XM_220428.4	Rapgef6_predicted	XP_220428.4	ILMN_1373813	0004920204	S	304	CTTGTTCAGACAAAGTTGAGCTCTGGTCATCCGGACAGCAAGGTCCTGTG	10	+	39818679-39818728	10q22	PREDICTED: Rattus norvegicus Rap guanine nucleotide exchange factor (GEF) 6 (predicted) (Rapgef6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577432-S	ILMN_274434	OLR693	NM_001000629.1	NM_001000629.1		404821	47577432	NM_001000629.1	Olr693	NP_001000629.1	ILMN_1354360	0002850022	S	560	GCACGGACACCCATATCCTGGATCTCTTAGTCATTCTCAACAGTGGGGTG	3	-	73630568-73630617	3q24	Rattus norvegicus olfactory receptor 693 (Olr693), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr693	Olr693
Rattus norvegicus	RefSeq	GI_62653622-S	ILMN_295013	RGD1566243_PREDICTED	XM_001065704.1	XM_001065704.1		500992	109484632	XM_001065704.1	RGD1566243_predicted	XP_001065704.1	ILMN_1361349	0004810398	S	1429	CAAAGACCTTCATGTGGGTACCATTGATGCCTGGGACATGACCATCGCAC				8q23	PREDICTED: Rattus norvegicus similar to protein of unknown function (predicted), transcript variant 3 (RGD1566243_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649363-S	ILMN_48015	LOC502975	XM_578481.1	XM_578481.1		502975	62649363	XM_578481.1	LOC502975	XP_578481.1	ILMN_1359910	0001660519	S	1577	GGAAGGCTATAGGAAAAATGTCTCCCAGCTCAGTGCTTTCCAGCTTGCCC				5q33	PREDICTED: Rattus norvegicus similar to Hypothetical protein DJ1198H6.2 (LOC502975), mRNA.					
Rattus norvegicus	RefSeq	GI_62655498-S	ILMN_273331	ORF19	XM_001072651.1	XM_001072651.1		367328	109487603	XM_001072651.1	ORF19	XP_001072651.1	ILMN_1364828	0003120082	S	906	GAAGAAACAGAAGGAGCAGGAGCAAGTGAGAGCTACCAGCCAAGGCGGGG				9q37	PREDICTED: Rattus norvegicus open reading frame 19 (ORF19), mRNA.					
Rattus norvegicus	RefSeq	GI_62645592-S	ILMN_279908	LOC687718	XM_001075166.1	XM_001075166.1		687718	109470453	XM_001075166.1	LOC687718	XP_001075166.1	ILMN_1363933	0002370440	S	205	GTCTTGGCGCTTTTCGGAGCAGCTAGTGGGGTCAGAGGGCGGGGAAACAT					PREDICTED: Rattus norvegicus similar to Carbohydrate sulfotransferase D4ST1 (Dermatan 4-sulfotransferase 1) (D4ST-1), transcript variant 2 (LOC687718), mRNA.					
Rattus norvegicus	RefSeq	GI_62639256-S	ILMN_298893	RSHL1	NM_001024748.1	NM_001024748.1		292684	67078519	NM_001024748.1	Rshl1	NP_001019919.1	ILMN_1358808	0004920088	S	2023	GAGTACCCCAGTGGCCCCGAAATCATGGAGATGAGCGACCCCACAGTAGA	1	+	78430672-78430721	1q21	Rattus norvegicus radial spokehead-like 1 (Rshl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]	Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]	Hn1-ps1	Hn1-ps1
Rattus norvegicus	RefSeq	GI_12831222-S	ILMN_61927	CSNK1G2	NM_023102.2	NM_023102.2		65278	76496490	NM_023102.2	Csnk1g2	NP_075590.2	ILMN_1368988	0004480632	S	1410	AGCGGCTACGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCTGCC	7	-	10588200-10588204:10588308-10588352	7q11	Rattus norvegicus casein kinase 1, gamma 2 (Csnk1g2), transcript variant 2, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658972-S	ILMN_58775	FBXW8_PREDICTED	XM_222223.4	XM_222223.4		304522	109495983	XM_222223.4	Fbxw8_predicted	XP_222223.4	ILMN_1355712	0005420072	S	1671	CCTACGAGAAGGTGCTGCGAAACTCCGACCTGGACAACTTTGCCTGTCAC	12	+	39662530-39662579	12q16	PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 8 (predicted) (Fbxw8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662812	ILMN_48654	RGD1307172_PREDICTED	XM_224942.3	XM_224942.3		306540	62662812	XM_224942.3	RGD1307172_predicted	XP_224942.3	ILMN_1651178	0004480603	S	721	GAGCAGTCCCCAGCTCTGTTTCAGGTTTCCCTCACGTCCTTGGAGAAGGG				16q12.3	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33309 (predicted) (RGD1307172_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21326474-S	ILMN_302957	MACROD1	NM_139337.1	NM_139337.1		246233	21326474	NM_139337.1	Macrod1	NP_647553.1	ILMN_1361586	0003360440	S	687	CAAGGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCA	1	+	209870586-209870589:209870870-209870915	1q43	Rattus norvegicus MACRO domain containing 1 (Macrod1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62642017-S	ILMN_70099	LOC365427	XM_345008.2	XM_345008.2		365427	62642017	XM_345008.2	LOC365427	XP_345009.2	ILMN_1362224	0007000717	S	420	GACAACTCCCTCGATTTCTGTGCCATCTGGAAGACTATGAATGGCCCCTC				1q51	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC365427), mRNA.					
Rattus norvegicus	RefSeq	GI_62654383-S	ILMN_54285	LOC367176	XM_345990.2	XM_345990.2		367176	62654383	XM_345990.2	LOC367176	XP_345991.2	ILMN_1351239	0003990180	S	123	GAGGCTGCCGACCCCCGCGACTACTACAGTCCCCAAACTGGAAAACCCAT				8q32	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (LOC367176), mRNA.					
Rattus norvegicus	RefSeq	GI_62658302-S	ILMN_278764	CCL25	NM_001037203.1	NM_001037203.1		360750	82524291	NM_001037203.1	Ccl25	NP_001032280.1	ILMN_1349884	0005900725	S	900	GGGGCGGGGGAGCTTGTTAGGAAGAAGACATTAACAGGAGAGAGAGGAAC	12	-	1427640-1427689	12p12	Rattus norvegicus chemokine (C-C motif) ligand 25 (Ccl25), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence ISS]	MGC125074	MGC125074
Rattus norvegicus	RefSeq	GI_62641692-S	ILMN_273255	LOC683919	XM_001068058.1	XM_001068058.1		683919	109463328	XM_001068058.1	LOC683919	XP_001068058.1	ILMN_1359655	0003130010	S	1041	CCCTGAGGAGGTGGATGAAGTATTTGAGCTGTCTCTGGCCCACTTGCTGC					PREDICTED: Rattus norvegicus similar to nudix-type motif 8 (LOC683919), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648421-S	ILMN_67751	LOC502907	XM_578409.2	XM_578409.2		502907	109472723	XM_578409.2	LOC502907	XP_578409.2	ILMN_1365741	0001400072	S	750	GTGCTCCAGCCCCTACCCATGTATTTGTCAGAAGAGACTGGATAAGTTCC	4	-	167660611-167660660	4q42	PREDICTED: Rattus norvegicus similar to immunoreceptor Ly49si1 (LOC502907), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663190-S	ILMN_68237	LOC498699	XM_579853.1	XM_579853.1		498699	62663190	XM_579853.1	LOC498699	XP_579853.1	ILMN_1370673	0001940040	S	1230	GTCTTTCTGTTGGTGGGGAAAGGGGTCTAGTGGTCAGTGCGAAAGCCTGG				17p14	PREDICTED: Rattus norvegicus LOC498699 (LOC498699), mRNA.					
Rattus norvegicus	RefSeq	GI_62664450-S	ILMN_51967	LOC502161	XM_577618.1	XM_577618.1		502161	62664450	XM_577618.1	LOC502161	XP_577618.1	ILMN_1364161	0005390347	S	744	GTCCGCGTCAAGAGGCTCCTGACCCAGTATGCTTACTTCAAACCTTATTC				18q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502161), mRNA.					
Rattus norvegicus	RefSeq	GI_40789246-S	ILMN_268403	PCDHA13	NM_053934.1	NM_053934.1		116742	40789246	NM_053934.1	Pcdha13	NP_446386.1	ILMN_1368849	0006980750	S	2366	GAGAAAGGCAGGTAGAACATTTGAAAGAGCCCCGACAGCCCAACCCTGAC	18	+	29749937-29749965:29897530-29897550	18p11	Rattus norvegicus protocadherin alpha 13 (Pcdha13), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cnr5	Cnr5
Rattus norvegicus	RefSeq	GI_55741686-S	ILMN_269638	IRF3	NM_001006969.1	NM_001006969.1		292892	55741686	NM_001006969.1	Irf3	NP_001006970.1	ILMN_1361041	0006200181	S	1297	GCACATCTCCAACAGCCAGCCGATCTCCCTTACCTCTGACCAGTACAAGG	1	+	95474930-95474979	1q22	Rattus norvegicus interferon regulatory factor 3 (Irf3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any type I interferon. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families [goid 45351] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	MGC94729	MGC94729
Rattus norvegicus	RefSeq	GI_62650722-S	ILMN_266309	MGEA6_PREDICTED	XM_001079741.1	XM_001079741.1		299078	109479427	XM_001079741.1	Mgea6_predicted	XP_001079741.1	ILMN_1369941	0006400341	S	1736	GTCAGATGTGGCCTCTGAAACAGAGTCACCCACGGGAGTCCACGAAGGAA				6q23	PREDICTED: Rattus norvegicus meningioma expressed antigen 6 (coiled-coil proline-rich) (predicted) (Mgea6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650724-S	ILMN_266309	MGEA6_PREDICTED	XM_001079741.1	XM_001079741.1		299078	109479427	XM_001079741.1	Mgea6_predicted	XP_001079741.1	ILMN_1349524	0002350609	S	4311	AGTGAGCTCCCGCCAGACATGAGTCCGCCTTCGAAAGAACCTGCAGCTGA				6q23	PREDICTED: Rattus norvegicus meningioma expressed antigen 6 (coiled-coil proline-rich) (predicted) (Mgea6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576758-S	ILMN_275387	OLR179	NM_001000949.1	NM_001000949.1		405294	47576758	NM_001000949.1	Olr179	NP_001000949.1	ILMN_1369823	0003940092	S	683	GACTCCCATCCTGGGAAGCCAGGCTCAAAGCTCTTAATACTTGTGGTTCC	1	-	162728499-162728548	1q33	Rattus norvegicus olfactory receptor 179 (Olr179), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr179	Olr179
Rattus norvegicus	RefSeq	GI_62642682-S	ILMN_56006	LOC497747	XM_579620.1	XM_579620.1		497747	62642682	XM_579620.1	LOC497747	XP_579620.1	ILMN_1356278	0004590647	S	3473	AGTGCATGGCCCGTCCTTCAGAAGTTAGGTCTCACCGAAGGAAGAGCTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133395 (LOC497747), mRNA.					
Rattus norvegicus	RefSeq	GI_62638395-S	ILMN_70264	HEY2	XM_344806.3	XM_344806.3		155430	109457672	XM_344806.3	Hey2	XP_344807.2	ILMN_1354467	0002850079	S	1114	ACTGGTGTCCTCCGTTTCGGAATCAGCTTCAAACCTCTGCACCCGGACGG	1	+	27513897-27513946	1p11	PREDICTED: Rattus norvegicus hairy/enhancer-of-split related with YRPW motif 2 (Hey2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the Notch signaling pathway [goid 45746] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the Notch signaling pathway [goid 45746] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654047	ILMN_60624	LOC360690	XM_340961.2	XM_340961.2		360690	62654047	XM_340961.2	LOC360690	XP_340962.2	ILMN_1650433	0005420093	S	1103	CCTGGACAGATGTCATACAGACCCTAAGAGAACACAAAGGCCAGCCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC360690), mRNA.					
Rattus norvegicus	RefSeq	GI_62660157-S	ILMN_50920	HNRPDL_PREDICTED	XM_223190.3	XM_223190.3		305178	62660157	XM_223190.3	Hnrpdl_predicted	XP_223190.3	ILMN_1360164	0002970592	S	1384	GGGCAGAGCGCAAGGCATACACCAGAAAACGCTGTCCTGTGGGAGGTGTA				14p22	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein D-like (predicted) (Hnrpdl_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.43669	ILMN_161327	RN.43669	Rn.43669		Rn.43669		33166755	CF110666			ILMN_1530242	0006520161	S	1123	AATGTGAAGGTATTTAGGTCTGTGTTGAAAGTCATATATTTTTATCTGTG					Shultzomica03917 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig3472 5', mRNA					
Rattus norvegicus	RefSeq	GI_27718516-S	ILMN_269564	RGD1559995_PREDICTED	XM_001055195.1	XM_001055195.1		299829	109482059	XM_001055195.1	RGD1559995_predicted	XP_001055195.1	ILMN_1349677	0002060132	S	189	CGGACTTACCGAGGTCTTAATTTATGGCTCTTGCAACCACAAGCTTCGGG				7q22	PREDICTED: Rattus norvegicus similar to developmental pluripotency associated 5 (predicted) (RGD1559995_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657665-S	ILMN_292059	MORC3_PREDICTED	XM_001054868.1	XM_001054868.1		304074	109494076	XM_001054868.1	Morc3_predicted	XP_001054868.1	ILMN_1360936	0004670390	S	3005	CAGCAGCTCTTGAGTGCAGACATCTGGTGTGGGTTCCACTTTCCGTGTAA				11q11	PREDICTED: Rattus norvegicus microrchidia 3 (predicted) (Morc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741476-S	ILMN_265203	MRAS	NM_012981.2	NM_012981.2		25482	55741476	NM_012981.2	Mras	NP_037113.2	ILMN_1367216	0002450463	S	3306	AATCCCAAAGCCCCTCAGACCCACCACACTAAGTCCAGAGCCACAGAGGG	8	-	104244897-104244946	8q31	Rattus norvegicus muscle and microspikes RAS (Mras), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718546-S	ILMN_275786	LOC501422	XM_576832.1	XM_576832.1		501422	62718546	XM_576832.1	LOC501422	XP_576832.1	ILMN_1355442	0006940546	S	1923	CCACCACTGTGTCTGCTGCAACTGCTGTCACCTGTGATGAGGTTAAGGAG	Un|NW_047912.1	+	150253-150302		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501422), mRNA.					
Rattus norvegicus	RefSeq	GI_62645246-S	ILMN_264469	OLA1	NM_001033927.1	NM_001033927.1		296488	76677910	NM_001033927.1	Ola1	NP_001029099.1	ILMN_1372040	0002030471	S	1561	TGTATGCCAAGCCTGACACATGTGACAGAGAAGACAATGTGGCTTGCTCC	3	-	55596382-55596431	3q22	Rattus norvegicus Obg-like ATPase 1 (Ola1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	PTD004; MGC156509	PTD004; MGC156509
Rattus norvegicus	RefSeq	GI_27692396-S	ILMN_263276	SPRR3_PREDICTED	XM_001053127.1	XM_001053127.1		310575	109467105	XM_001053127.1	Sprr3_predicted	XP_001053127.1	ILMN_1365296	0005690593	S	358	CCAAATTATACCACGATTCCCGGGCCATGCTCTACTAACATCCCTGGGCC				2q34	PREDICTED: Rattus norvegicus small proline-rich protein 3 (predicted) (Sprr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090304-S	ILMN_270992	NFATC2IP	NM_001007692.1	NM_001007692.1		308983	56090304	NM_001007692.1	Nfatc2ip	NP_001007693.1	ILMN_1366076	0004200047	S	1297	GCTTTCAGGCAAGGAGTTGCCGACTGATCTGGGTCTGGAATCCGGAGATC	1	-	185471042-185471091	1q36	Rattus norvegicus nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein (Nfatc2ip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93987	MGC93987
Rattus norvegicus	RefSeq	GI_62655374-S	ILMN_262535	USP40	XM_001065510.1	XM_001065510.1		316599	109487475	XM_001065510.1	Usp40	XP_001065510.1	ILMN_1359335	0006590239	S	4358	GGCAAGAGGCAGGACCATCAAAGAAGCCTAGCACAACAAATCCAGGCTCC				9q35	PREDICTED: Rattus norvegicus ubiquitin specific protease 40 (Usp40), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576584-S	ILMN_279949	OLR165	NM_001000172.1	NM_001000172.1		293312	47576584	NM_001000172.1	Olr165	NP_001000172.1	ILMN_1371806	0000430273	S	327	CACGCTGATGGAGTCTGGGGTTCTCATGCTCATGGCTCTGGATCGCTACA	1	-	162420801-162420850	1q33	Rattus norvegicus olfactory receptor 165 (Olr165), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162516654-162515686_ORF; Olr165	ratchr1-162516654-162515686_ORF; Olr165
Rattus norvegicus	RefSeq	GI_62666325-S	ILMN_69024	LOC499480	XM_574803.1	XM_574803.1		499480	62666325	XM_574803.1	LOC499480	XP_574803.1	ILMN_1352984	0002360520	S	65	CCTCCATTGTTGGTGGGATTGCAAGCAGGTACAACCACTCTGGAAACCAT					PREDICTED: Rattus norvegicus similar to LRRG00124 (LOC499480), mRNA.					
Rattus norvegicus	RefSeq	GI_62642190-S	ILMN_301433	CH25H	NM_001025415.1	NM_001025415.1		309527	70794753	NM_001025415.1	Ch25h	NP_001020586.1	ILMN_1367421	0001500632	S	622	TTAACATCTGGCTGTCGGTGGAGGACCACTCAGGTTACGACTTTCCGTGG	1	-	238457664-238457713	1q52	Rattus norvegicus cholesterol 25-hydroxylase (Ch25h), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: cholesterol + AH2 + O2 = 25-hydroxycholesterol + A + H2O [goid 1567] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658941-S	ILMN_57238	LOC304500	XM_222190.3	XM_222190.3		304500	62658941	XM_222190.3	LOC304500	XP_222190.3	ILMN_1367683	0002760471	S	1132	GCAATAAGGCTCCTTCCTGGGGCTTCTGGGAAAGCAGAGGGCATAGCCAC				12q16	PREDICTED: Rattus norvegicus similar to acetyl-coA dehydrogenase -related (111.6 kD) (5G231) (predicted) (LOC304500), mRNA.					
Rattus norvegicus	RefSeq	GI_57164116-S	ILMN_263928	APON	NM_001009385.1	NM_001009385.1		304603	57164116	NM_001009385.1	Apon	NP_001009385.1	ILMN_1366106	0002480093	S	862	TCTCACAACATGCCCTTTAGTAGATACACACACAGCAACTGCCCAGGGTG	7	-	1550578-1550627	7q11	Rattus norvegicus apolipoprotein N (Apon), mRNA.				MGC108794; Apon	MGC108794; Apon
Rattus norvegicus	RefSeq	GI_29789131-S	ILMN_67545	DAF1	NM_022269.1	NM_022269.1		64036	29789131	NM_022269.1	Daf1	NP_071605.1	ILMN_1364093	0005360632	S	1323	GTCTTAGGACAGCTTCGGGTCATCTGGCCAATCAGTCAGGTAGCACTGAG				13q13	Rattus norvegicus decay accelarating factor 1 (Daf1), mRNA.				Daf	Daf
Rattus norvegicus	RefSeq	GI_62665777-A	ILMN_285049	ZFAND3	NM_001012175.1	NM_001012175.1		361816	58865921	NM_001012175.1	Zfand3	NP_001012175.1	ILMN_1376437	0002320551	S	2172	GTGCAGGTCTGCCTAGCGTTTACCACTGCTGTTAAGCCACAGCTCTCTGG	20	+	8523366-8523415	20p12	Rattus norvegicus zinc finger, AN1-type domain 3 (Zfand3), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tex27	Tex27
Rattus norvegicus	RefSeq	GI_16758505-S	ILMN_267390	SLFN3	NM_053687.1	NM_053687.1		114247	16758505	NM_053687.1	Slfn3	NP_446139.1	ILMN_1361588	0000730619	S	4544	AAAGACCGGTTGCCCTTCACGAGAGGTCTGATGACTGGGCTATGAGCTGG	10	+	71300870-71300919	10q26	Rattus norvegicus schlafen 3 (Slfn3), mRNA.				Slfn4	Slfn4
Rattus norvegicus	RefSeq	GI_62660947-S	ILMN_66254	RGD1561672_PREDICTED	XM_223715.4	XM_223715.4		305610	109500139	XM_223715.4	RGD1561672_predicted	XP_223715.4	ILMN_1361648	0006770136	S	2933	TGGGGCACACCTGTGAAGGAATCTGGCCTGCTCACAGCGACGTGACTGAT	14	-	110818002-110818051	14q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978460-S	ILMN_161860	ADRB2	NM_012492.2	NM_012492.2		24176	55926226	NM_012492.2	Adrb2	NP_036624.2	ILMN_2040847	0007100674	S	1865	CCTGTACCCTTGGACTTGAAATATCCTGTGTCTTGGACCTTTCTGCTGTG	18	-	58175086-58175135	18q12.1	Rattus norvegicus adrenergic, beta-2-, receptor, surface (Adrb2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence TAS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The process by which the secretion of norepinephrine or epinephrine into the bloodstream modulates the force with which blood passes through the circulatory system [goid 1993] [evidence ISS]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IEA]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence ISS]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence IEA]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence ISS]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence IEA]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence IEA]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence ISS]; Any process that activates, maintains or increases the rate of skeletal muscle growth [goid 48633] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51927] [evidence IDA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IMP]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IEA]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4941] [evidence IEA];  [goid 4941] [evidence IDA];  [goid 4941] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence TAS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine [goid 51379] [evidence TAS]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence IEA]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence ISS]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55926226-S	ILMN_161860	ADRB2	NM_012492.2	NM_012492.2		24176	55926226	NM_012492.2	Adrb2	NP_036624.2	ILMN_1367702	0000510014	S	1349	GAGGAAGCCCCTGGCATGGAAGGCTTTGTGAACTGTCAAGGTACTGTGCC	18	-	58175602-58175651	18q12.1	Rattus norvegicus adrenergic, beta-2-, receptor, surface (Adrb2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence TAS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The process by which the secretion of norepinephrine or epinephrine into the bloodstream modulates the force with which blood passes through the circulatory system [goid 1993] [evidence ISS]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IEA]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence ISS]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence IEA]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence ISS]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence IEA]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IEA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence IEA]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence ISS]; Any process that activates, maintains or increases the rate of skeletal muscle growth [goid 48633] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51927] [evidence IDA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IMP]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IEA]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEA]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction [goid 45986] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4941] [evidence IEA];  [goid 4941] [evidence IDA];  [goid 4941] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence TAS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine [goid 51379] [evidence TAS]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence IEA]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence ISS]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660818-S	ILMN_56972	RGD1566234_PREDICTED	XM_573664.2	XM_573664.2		498416	109500054	XM_573664.2	RGD1566234_predicted	XP_573664.2	ILMN_1370918	0004070504	S	2884	TCCAGTGCCGGAGACCTCATTACTTTGGAAAACTCGCTGTTCCCCAGCGC	14	-	92816935-92816984	14q21	PREDICTED: Rattus norvegicus similar to Grb10 protein (predicted) (RGD1566234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42475959-S	ILMN_290255	STAMBP	NM_138531.2	NM_138531.2		171565	42475959	NM_138531.2	Stambp	NP_612540.1	ILMN_1366608	0004570465	S	1404	AAGGCTTTCACCCCCATGGCAGAGACCCACCGCTGTTCTGTGACTGCAGC	4	-	117767164-117767173:117770343-117770382	4q34	Rattus norvegicus Stam binding protein (Stambp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Amsh	Amsh
Rattus norvegicus	RefSeq	GI_62717876-S	ILMN_53293	LOC503301	XM_578837.1	XM_578837.1		503301	62717876	XM_578837.1	LOC503301	XP_578837.1	ILMN_1356709	0000510110	S	1459	TGAGCGGTGGCCCGTCTGAGTCGGCCTGTGACTGCTCTGTTCACCTCTAG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503301), mRNA.					
Rattus norvegicus	RefSeq	GI_34877289-S	ILMN_62087	LOC361284	XM_341569.1	XM_341569.1		361284	34877289	XM_341569.1	LOC361284	XP_341570.1	ILMN_1371723	0006660176	S	465	GCAGATCAGTAACGTAGGTGCCCTTTGTCGTGATGATGAGGTGGCCCTGC					PREDICTED: Rattus norvegicus similar to nebulette non-muscle isoform (LOC361284), mRNA.					
Rattus norvegicus	RefSeq	GI_62638273-S	ILMN_285324	RGD1564110_PREDICTED	XM_218106.3	XM_218106.3		308248	62638273	XM_218106.3	RGD1564110_predicted	XP_218106.4	ILMN_1360030	0000780373	S	1735	GAAGATCCATTAGGGATGGCTCTAGGATGCATGGCCCTGTCCTTCTCAGC	1	-	1135539-1135588	1p13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1564110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861061-S	ILMN_284398	RGD1561654_PREDICTED	XM_001079552.1	XM_001079552.1		295557	109467772	XM_001079552.1	RGD1561654_predicted	XP_001079552.1	ILMN_1355565	0000870075	S	370	GAGGACGCACTCACCTATGAGGACACACTCACCTATGAGGACACACTCAC				2q44	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1561654_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657600-S	ILMN_263183	LOC685363	XM_001063496.1	XM_001063496.1		685363	109492883	XM_001063496.1	LOC685363	XP_001063496.1	ILMN_1356487	0000520600	S	76	TATGGCTCCTACTATGGCTGTGGCTACCGTGGACTGGGCTGTGGCTATGG	11	+	28843342-28843391	11q11	PREDICTED: Rattus norvegicus hypothetical protein LOC685363 (LOC685363), mRNA.					
Rattus norvegicus	RefSeq	GI_6978746-S	ILMN_286968	CYP2D2	NM_012730.1	NM_012730.1		25053	6978746	NM_012730.1	Cyp2d2	NP_036862.1	ILMN_1375109	0005290008	S	1624	CTAGCAGGGGCAGGGGCTCCATTCTTCTCCCCGGTTTGGTCTGATTGATG	7	-	120796219-120796268	7q34	Rattus norvegicus cytochrome P450, family 2, subfamily d, polypeptide 2 (Cyp2d2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	Cyp2d26; Cyp2d2	Cyp2d26; Cyp2d2
Rattus norvegicus	RefSeq	GI_62655598-S	ILMN_272532	RGD1565449_PREDICTED	XM_001075629.1	XM_001075629.1		360464	109489572	XM_001075629.1	RGD1565449_predicted	XP_001075629.1	ILMN_1353165	0006760739	S	1719	TGACCCGGAACTTGAACAGACGGATTACTGTGCAGACCCCCTCCCAGAGG				10q11	PREDICTED: Rattus norvegicus similar to Parn protein (predicted) (RGD1565449_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661518-S	ILMN_267139	RGD1565970_PREDICTED	XM_001058441.1	XM_001058441.1		498519	109502458	XM_001058441.1	RGD1565970_predicted	XP_001058441.1	ILMN_1370115	0000940068	S	26	GATCTTCCTGGTGGCTGTCCTACCAGTCAACACTGAAGGAGGAGAGATCG				15p12	PREDICTED: Rattus norvegicus similar to mast cell protease 8 (predicted) (RGD1565970_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663957-S	ILMN_63069	LOC502146	XM_577599.1	XM_577599.1		502146	62663957	XM_577599.1	LOC502146	XP_577599.1	ILMN_1358421	0004670725	S	682	GTGCGCTCACTGTGAAGATGGTGAAGATGGAGTGTGTGCTCACTGTGAAG					PREDICTED: Rattus norvegicus LOC502146 (LOC502146), mRNA.					
Rattus norvegicus	RefSeq	GI_62665214-S	ILMN_267305	TERF2_PREDICTED	XM_001076545.1	XM_001076545.1		361403	109508841	XM_001076545.1	Terf2_predicted	XP_001076545.1	ILMN_1368919	0001190161	S	1866	AAGCGAGTGGGTGAAGGATGGAGTGCAGAAATACGGGGAAGGAAACTGGG				19q12	PREDICTED: Rattus norvegicus telomeric repeat binding factor 2 (predicted) (Terf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646487-S	ILMN_65231	CDH26_PREDICTED	XM_230942.2	XM_230942.2		311693	62646487	XM_230942.2	Cdh26_predicted	XP_230942.2	ILMN_1360295	0004070097	S	2592	GCCAAGCCTGGGGTGAAGGGTTGTGGCATGTTCTTTGAGCCAAGAGGAGC				3q43	PREDICTED: Rattus norvegicus cadherin-like 26 (predicted) (Cdh26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644818-S	ILMN_50349	MRPS2_PREDICTED	XM_342398.3	XM_342398.3		362094	109467958	XM_342398.3	Mrps2_predicted	XP_342399.3	ILMN_1365807	0006020592	S	1372	CCCTCAGGAACCCCAGTAGTTGCCTCTAGACCTGCAACCAGACATAGGGC	3	+	7460492-7460541	3p12	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S2 (predicted) (Mrps2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656765-S	ILMN_268717	LOC497978	NM_001039341.1	NM_001039341.1		497978	86129583	NM_001039341.1	LOC497978	NP_001034430.1	ILMN_1360422	0002120164	S	1699	TTCGAATCGGACAGGCCCATACCGTGCGGCTGACTTTGAAGTGCTCCAGG	10	-	77514733-77514754:77515266-77515293	10q26	Rattus norvegicus similar to diacylglycerol kinase epsilon (LOC497978), mRNA.		The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124991	MGC124991
Rattus norvegicus	RefSeq	GI_13540643-S	ILMN_286231	SYT13	NM_030839.1	NM_030839.1		80977	13540643	NM_030839.1	Syt13	NP_110466.1	ILMN_1372823	0003800524	S	1388	CTCTGAGCGAAGCCACTGGGAGGAGATGCTAAAAAACCCACGCCGGCAGA	3	+	77356076-77356111	3q24	Rattus norvegicus synaptotagmin XIII (Syt13), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]	The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62639230-S	ILMN_286462	DYRK1B_PREDICTED	XM_001078118.1	XM_001078118.1		308468	109461559	XM_001078118.1	Dyrk1b_predicted	XP_001078118.1	ILMN_1373429	0004060162	S	1635	TCCTCCAGTGACAACAGGGCCTACCGCTACAGCAACCGATATTGTGGGGG				1q21	PREDICTED: Rattus norvegicus dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b (predicted) (Dyrk1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659588-S	ILMN_58146	ANKRD45_PREDICTED	XM_213908.4	XM_213908.4		289152	109498094	XM_213908.4	Ankrd45_predicted	XP_213908.4	ILMN_1354051	0003360132	S	771	CGTTGCTGCTCGCTATTCTCAGGCCGAATGTGTTCATTTTCTGGACCGGG	13	+	76728560-76728609	13q22	PREDICTED: Rattus norvegicus ankyrin repeat domain 45 (predicted) (Ankrd45_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654174-S	ILMN_263488	SOX14_PREDICTED	XM_236605.2	XM_236605.2		300954	62654174	XM_236605.2	Sox14_predicted	XP_236605.2	ILMN_1351088	0000070273	S	1722	CCAGCTAGGCACCATTTGCTCTTCCCGTGTGGGGGTGAGAGGCTTAAAAG	8	-	104737286-104737335	8q31	PREDICTED: Rattus norvegicus SRY-box containing gene 14 (predicted) (Sox14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656692-S	ILMN_63661	DUSP14_PREDICTED	XM_340861.3	XM_340861.3		360580	109488712	XM_340861.3	Dusp14_predicted	XP_340862.3	ILMN_1355328	0001410113	S	39	TTCGAACGCTAGCTCAGAAGCTGGGCCGGAGGACAACGCCGCAGCGAGGA	10	-	72355781-72355830	10q26	PREDICTED: Rattus norvegicus dual specificity phosphatase 14 (predicted) (Dusp14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424209-S	ILMN_287323	USMG5	NM_133544.1	NM_133544.1		171069	19424209	NM_133544.1	Usmg5	NP_598228.1	ILMN_1352524	0000580162	S	2	TGATCGGACGAAGAAGATTGAAGTCATGGCTGGCCCAGAAAGTGATGGCC	1	-	252409387-252409411:252409412-252409420:252413305-252413320	1q54	Rattus norvegicus upregulated during skeletal muscle growth 5 (Usmg5), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Dapit	Dapit
Rattus norvegicus	RefSeq	GI_62663087-S	ILMN_289360	RGD1309747_PREDICTED	XM_001062297.1	XM_001062297.1		306665	109460659	XM_001062297.1	RGD1309747_predicted	XP_001062297.1	ILMN_1373807	0005570102	S	6707	TGTCAGCTGCCTGGAAGAGGTTGGCTCTCTGAGTACTGATGGCTCAGCAG				17p14	PREDICTED: Rattus norvegicus similar to KIAA0947 protein (predicted) (RGD1309747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453373-S	ILMN_265849	PEX14	NM_172063.1	NM_172063.1		64460	25453373	NM_172063.1	Pex14	NP_742060.1	ILMN_1359436	0002190487	S	1531	TGGCTTGTGGCTTCTTCTTTGCCTGTTCCAATAGCCAGGGTGCCAGCCCC	5	-	166038639-166038688	5q36	Rattus norvegicus peroxisomal biogenesis factor 14 (Pex14), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IDA]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence IEA]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence ISS]; Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes [goid 32582] [evidence IEA]; Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes [goid 32582] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641358-S	ILMN_282760	TGFB1I1	XM_001079262.1	XM_001079262.1		84574	109462943	XM_001079262.1	Tgfb1i1	XP_001079262.1	ILMN_1355379	0006100242	S	1882	TGTCTGAAATCCCAACACGGAGGCCGGGGCAGATGATCCTAAGCTGCATA				1q36	PREDICTED: Rattus norvegicus transforming growth factor beta 1 induced transcript 1 (Tgfb1i1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence TAS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of adipocyte differentiation [goid 45599] [evidence ISS]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an androgen receptor [goid 50681] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659664-S	ILMN_61901	TNFSF18_PREDICTED	XM_344166.3	XM_344166.3		364031	109498100	XM_344166.3	Tnfsf18_predicted	XP_344167.3	ILMN_1353871	0000840452	S	276	GACAGCTCCTGAACCTCACTGTGTGAATATGACATCTGATGGGATGCTGG	13	+	77144924-77144973	13q22	PREDICTED: Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 18 (predicted) (Tnfsf18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654736-S	ILMN_275564	RGD1560151_PREDICTED	XM_576520.1	XM_576520.1		501105	62654736	XM_576520.1	RGD1560151_predicted	XP_576520.1	ILMN_1364397	0002810128	S	1019	CCGGATAGGAGCAATGGTCTGGGCGATGCTTCCACACAACGAGAGACAAC	9	+	13136690-13136739	9q12	PREDICTED: Rattus norvegicus similar to predicted CDS, mechanosensory transduction channel NOMPC (1O503) (predicted) (RGD1560151_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666494-S	ILMN_293670	PFC_MAPPED	XM_001056015.1	XM_001056015.1		299314	109511457	XM_001056015.1	Pfc_mapped	XP_001056015.1	ILMN_1350897	0006400632	S	1398	CCACTGTGTGAGGTGCTACAGGGGCAGAAGCTGGTGGTGGAAGAGAAACG				Xq12	PREDICTED: Rattus norvegicus properdin factor, complement (mapped) (Pfc_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_16758665-S	ILMN_289015	TIMP1	NM_053819.1	NM_053819.1		116510	16758665	NM_053819.1	Timp1	NP_446271.1	ILMN_1359200	0000110348	S	601	GCCTGCCACGGAATCCAGATTTGTGCACCTGGCAATACCTTGGGGTCTCG	X	-	12542585-12542634	Xq12	Rattus norvegicus TIMP metallopeptidase inhibitor 1 (Timp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]	A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand [goid 1775] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of membrane protein ectodomain proteolysis [goid 51045] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence TAS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence IEA]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence ISS]	TIMP-1; Timp	TIMP-1; Timp
Rattus norvegicus	RefSeq	GI_6981321-S	ILMN_299716	P2RX6	NM_012721.1	NM_012721.1		25041	6981321	NM_012721.1	P2rx6	NP_036853.1	ILMN_1369288	0000380041	S	1905	GGCAGTTTGGCTGTGGATGTGCAGTCACGGAGGGAATACCAAGGCTAGGG	11	-	85431471-85431520	11q23	Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 6 (P2rx6), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	P2x6; Rnap2x6	P2x6; Rnap2x6
Rattus norvegicus	RefSeq	GI_62945303	ILMN_272596	LOC497934	NM_001017474.1	NM_001017474.1		497934	62945303	NM_001017474.1	LOC497934	NP_001017474.1	ILMN_1530467	0004010292	S	1777	TTGTGGAGTATTCTAATCAATTTTGGCTTTCTGAGTTTTTGTGGAATTAA	10	+	55815817-55815866	10q24	Rattus norvegicus similar to hypothetical protein FLJ20014 (LOC497934), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656283-S	ILMN_272596	LOC497934	NM_001017474.1	NM_001017474.1		497934	62945303	NM_001017474.1	LOC497934	NP_001017474.1	ILMN_1362225	0004280156	S	1566	AGGAACTTAAATGATCCCTGTCCACAACCATGCGAGGGCGAGGGTACACC	10	+	55815606-55815655	10q24	Rattus norvegicus similar to hypothetical protein FLJ20014 (LOC497934), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646532-A	ILMN_293414	SRMS	NM_001011961.1	NM_001011961.1		296472	58865491	NM_001011961.1	Srms	NP_001011961.1	ILMN_1376921	0005080133	S	1943	CACGGACGTGCTGGACAGACAAGTACCCACAGAGCCAGCAGTTTCCTCCT	3	-	170348163-170348212	3q43	Rattus norvegicus src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srms), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109505	MGC109505
Rattus norvegicus	RefSeq	GI_62664946-S	ILMN_276099	RGD1308267_PREDICTED	XM_001067127.1	XM_001067127.1		361375	109508509	XM_001067127.1	RGD1308267_predicted	XP_001067127.1	ILMN_1373834	0001660148	S	2083	CAAAATGAAGATGCGGAAAGAAGGGAGGGCCAGATACAGCCCGGATCAGC				19p11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20718 (predicted) (RGD1308267_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_49226058-S	ILMN_283941	PHKG2	NM_080584.3	NM_080584.3		140671	49226058	NM_080584.3	Phkg2	NP_542151.1	ILMN_1358410	0002650750	S	1427	CCCCATCATTGCCACTGACCTGGAAGGAGACTCCAGTGCTATCACAGAGG	1	+	186870253-186870302	1q36	Rattus norvegicus phosphorylase kinase, gamma 2 (testis) (Phkg2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; An enzyme complex that catalyzes the phosphorylation of phosphorylase b to form phosphorylase a [goid 5964] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IDA]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: 4 ATP + 2 phosphorylase b = 4 ADP + phosphorylase a [goid 4689] [evidence IDA]; Catalysis of the reaction: 4 ATP + 2 phosphorylase b = 4 ADP + phosphorylase a [goid 4689] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645433-S	ILMN_58660	LOC499840	XM_580025.1	XM_580025.1		499840	62645433	XM_580025.1	LOC499840	XP_580025.1	ILMN_1354224	0004730538	S	706	GTGAAGGAGCACGCCAAGGAGCACCAAGGACCAAGAGGAGACCAGATGAG					PREDICTED: Rattus norvegicus LOC499840 (LOC499840), mRNA.					
Rattus norvegicus	RefSeq	GI_47576104-S	ILMN_276675	OLR1397	NM_001001094.1	NM_001001094.1		405988	47576104	NM_001001094.1	Olr1397	NP_001001094.1	ILMN_1373658	0002760035	S	879	GGATGTGAAAGGGGCTCTGTGCAAGGTACTTAGAAAAGGAAGAGACAAAG	10	+	34922674-34922723	10q22	Rattus norvegicus olfactory receptor 1397 (Olr1397), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1397	Olr1397
Rattus norvegicus	RefSeq	GI_62660838-S	ILMN_267588	RGD1560600_PREDICTED	XM_001058059.1	XM_001058059.1		289810	109501049	XM_001058059.1	RGD1560600_predicted	XP_001058059.1	ILMN_1370432	0004200039	S	1156	GCTGTAAGCAGCCCCACCCACTCGCTGCACAACATTTATGAGTCACGGTC				14q22	PREDICTED: Rattus norvegicus similar to small unique nuclear receptor co-repressor (predicted) (RGD1560600_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656202-S	ILMN_53944	EPPB9_PREDICTED	XM_213314.4	XM_213314.4		287383	109488173	XM_213314.4	Eppb9_predicted	XP_213314.3	ILMN_1353057	0001780725	S	514	CCCAGGGTGAAGGTCGGGAAGTGACCCGTGTTCGCTCTCAGGGATTTGTT	10	+	47672700-47672720:47672948-47672976	10q23	PREDICTED: Rattus norvegicus endothelial precursor protein B9 (predicted) (Eppb9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655459-S	ILMN_263982	ASB1_PREDICTED	XM_001069370.1	XM_001069370.1		316628	109487492	XM_001069370.1	Asb1_predicted	XP_001069370.1	ILMN_1356432	0003710348	S	1588	GCCAGAAGTATTCCCAGGACCTTGCTGAGTTTGTGTCGTGTGGCTGTGCG				9q36	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing protein 1 (predicted) (Asb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34872275-S	ILMN_49458	LOC360258	XM_346435.1	XM_346435.1		360258	34872275	XM_346435.1	LOC360258	XP_346436.1	ILMN_1366882	0000460017	S	1306	GCTGTACACCTTGGCAGTTTATCCTGTCCGAGGGGAAAGTGTACAATTGA					PREDICTED: Rattus norvegicus protein serine-threonine phosphatase catalytic subunit PP-1b (LOC360258), mRNA.					
Rattus norvegicus	RefSeq	GI_13929089-S	ILMN_293917	RABAC1	NM_031774.1	NM_031774.1		83583	13929089	NM_031774.1	Rabac1	NP_113962.1	ILMN_1368049	0002030068	S	757	AGCCTAACTCTGAGCCTTCCACCCTAGACCTCAAACCCGGGGAGAGGCTT	1	-	80271964-80272013	1q21	Rattus norvegicus Rab acceptor 1 (prenylated) (Rabac1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence NAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC105390; Pra1	MGC105390; Pra1
Rattus norvegicus	RefSeq	GI_62643193-S	ILMN_58569	LOC502520	XM_578004.1	XM_578004.1		502520	62643193	XM_578004.1	LOC502520	XP_578004.1	ILMN_1357387	0003290717	S	586	GTTGGGCTGTAATCCAGGTAGTGCACAAAACCTCTTCTGTGGGTTCCCGG					PREDICTED: Rattus norvegicus similar to COX11 homolog, cytochrome c oxidase assembly protein (LOC502520), mRNA.					
Rattus norvegicus	RefSeq	GI_62659705-S	ILMN_266036	RGD1565283_PREDICTED	XM_001076814.1	XM_001076814.1		498274	109499006	XM_001076814.1	RGD1565283_predicted	XP_001076814.1	ILMN_1363397	0002900403	S	599	GTGTACTACCGCAAGCTCAAAACCCTCTGGGGCAAGGAGCAAAAGGCCCG				13q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565283_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647738-S	ILMN_273450	MXD1	XM_001074696.1	XM_001074696.1		362391	109473855	XM_001074696.1	Mxd1	XP_001074696.1	ILMN_1353390	0000670152	S	738	GTGTACCAGACCTGTCCAGATGCCCTTGCACGCAAACCTCATGTACCACC				4q34	PREDICTED: Rattus norvegicus max dimerization protein 1 (Mxd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653517-S	ILMN_56954	LOC500975	XM_576385.1	XM_576385.1		500975	62653517	XM_576385.1	LOC500975	XP_576385.1	ILMN_1358561	0000520538	S	69	GGGCACTCTGAGGGACAAGAGGAGCTTCTGCAGTTTGTAGAGTTACAGGG				8q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004L22 (LOC500975), mRNA.					
Rattus norvegicus	RefSeq	GI_62653929-S	ILMN_288443	MTO1_PREDICTED	XM_001060155.1	XM_001060155.1		300852	109485036	XM_001060155.1	Mto1_predicted	XP_001060155.1	ILMN_1373233	0006110184	S	2273	CGAGAGAAGCTACACTTGAGTCGCCCACAGACGATTGGAGCTGCTAGTCG				8q31	PREDICTED: Rattus norvegicus mitochondrial translation optimization 1 homolog (S. cerevisiae) (predicted) (Mto1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850611-S	ILMN_294317	WDR34	NM_001005542.1	NM_001005542.1		296618	53850611	NM_001005542.1	Wdr34	NP_001005542.1	ILMN_1354162	0006590133	S	1494	TGAGCACAGCCTTCACGGAACAAGGACCCCGAGAGGCCGAGGACTTGGAC	3	-	9021946-9021995	3p12	Rattus norvegicus WD repeat domain 34 (Wdr34), mRNA.				MGC95297	MGC95297
Rattus norvegicus	RefSeq	GI_62664134-S	ILMN_65365	RGD1562608_PREDICTED	XM_574112.2	XM_574112.2		498831	109506380	XM_574112.2	RGD1562608_predicted	XP_574112.2	ILMN_1362216	0003440047	S	483	GTGAAGAAAAGGAGGTGACAGAGGAGCGACTGAAAACTGAGCAGGAGTCC	18	-	17099983-17100029:17100030-17100032	18p12	PREDICTED: Rattus norvegicus similar to KIAA1328 protein (predicted) (RGD1562608_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577100-S	ILMN_293446	OLR315	NM_001000243.1	NM_001000243.1		293609	47577100	NM_001000243.1	Olr315	NP_001000243.1	ILMN_1364316	0006980338	S	879	GAACAAGGATGTCAAGCTCGCCCTAGGCAGACTCTTACCCTCTTTCTCAC	1	+	200858844-200858893	1q41	Rattus norvegicus olfactory receptor 315 (Olr315), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-201007958-201008890_ORF; Olr315	ratchr1-201007958-201008890_ORF; Olr315
Rattus norvegicus	RefSeq	GI_62644546-S	ILMN_58658	LOC499726	XM_580007.1	XM_580007.1		499726	62644546	XM_580007.1	LOC499726	XP_580007.1	ILMN_1368449	0000540440	S	2489	CTTGAAGACGTGTACCTCTCGGTTTACCTCAAGGGTTCTCCCCATTGGTT					PREDICTED: Rattus norvegicus LOC499726 (LOC499726), mRNA.					
Rattus norvegicus	RefSeq	GI_62648001-A	ILMN_302036	GUCY2C	NM_013170.1	NM_013170.1		25711	6980999	NM_013170.1	Gucy2c	NP_037302.1	ILMN_1376343	0000520040	S	1468	CAGCCTGAAGATTGACGATGACAGGAGGCGGGATACAATCCAGAGAGTGC	4	-	173742277-173742317:173748786-173748794	4q43	Rattus norvegicus guanylate cyclase 2C (Gucy2c), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a toxin, a poisonous substance that causes damage to biological systems. Toxins are differentiated from simple chemical poisons and vegetable alkaloids by their high molecular weight and antigenicity (they elicit an antibody response) [goid 15643] [evidence IDA]	GCC	GCC
Rattus norvegicus	RefSeq	GI_62648936-S	ILMN_48708	LOC298076	XM_216406.3	XM_216406.3		298076	62648936	XM_216406.3	LOC298076	XP_216406.3	ILMN_1366855	0002450064	S	4723	AGGACCCTGCTGTTGGAGTCTCGTCGCTGGAAGGAAAGCTGGAAACGCTC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC298076), mRNA.					
Rattus norvegicus	RefSeq	GI_62660077-S	ILMN_274326	RGD1560966_PREDICTED	XR_007656.1	XR_007656.1		501882	109500191	XR_007656.1	RGD1560966_predicted		ILMN_1350405	0001050021	S	2263	ACCATAGCACCATGGGGAAGGTCATGGTAGTCGTGGAGGTCTTTTCCATC				14p22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1560966_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660339-S	ILMN_282218	POLR2B_PREDICTED	XM_001075841.1	XM_001075841.1		289561	109500529	XM_001075841.1	Polr2b_predicted	XP_001075841.1	ILMN_1359372	0005690181	S	3529	GGGGATGCCGCAATAAGACCCAGATCTCCTTGGTGCGAATGCCGTATGCG				14p11	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide B (predicted) (Polr2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659711-S	ILMN_266507	RGD1563018_PREDICTED	XM_001076935.1	XM_001076935.1		498275	109499011	XM_001076935.1	RGD1563018_predicted	XP_001076935.1	ILMN_1369068	0001940593	S	1226	CTGTGAACCCCATAACCCCAGAGACCACAGTCGTGGAGAGCCAAGAGGAC				13q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31052 isoform a (predicted) (RGD1563018_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664701-S	ILMN_56610	ZFP236_PREDICTED	XM_225695.4	XM_225695.4		291409	109506846	XM_225695.4	Zfp236_predicted	XP_225695.4	ILMN_1349277	0005550292	S	5518	CACTTAGAGGAAGTGGTGCAGGAGGCAGCGGGTGAATGGCAGACGCTAAC	18	-	79071433-79071482	18q12.3	PREDICTED: Rattus norvegicus zinc finger protein 236 (predicted) (Zfp236_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650467-S	ILMN_275701	PUM2	XM_001068003.1	XM_001068003.1		298874	109479063	XM_001068003.1	Pum2	XP_001068003.1	ILMN_1349337	0000130440	S	5905	CCTCTAGCAGTCCTGATTCATACCTCCCAGTGCTGACAACCCAGTCCTCC				6q14	PREDICTED: Rattus norvegicus pumilio 2 (Drosophila) (Pum2), mRNA.			Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653717-S	ILMN_66970	LOC367089	XM_345943.2	XM_345943.2		367089	62653717	XM_345943.2	LOC367089	XP_345944.2	ILMN_1373591	0006550162	S	233	GGAGGACGGTGAGACTGTCACTGATGGTCTGCAGCCTGGAGGTTCAAAGC					PREDICTED: Rattus norvegicus similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g (LOC367089), mRNA.					
Rattus norvegicus	RefSeq	GI_62655319-S	ILMN_57139	LOC301556	XM_217457.3	XM_217457.3		301556	62655319	XM_217457.3	LOC301556	XP_217457.3	ILMN_1365250	0004540619	S	8309	GGCCCAGACACCCAGTACAAATGTGGAACACGGGAACACGGGAAGAGCTG				9q34	PREDICTED: Rattus norvegicus similar to Dedicator of cytokinesis protein 10 (Protein zizimin 3) (LOC301556), mRNA.					
Rattus norvegicus	RefSeq	GI_62663459-S	ILMN_56062	RGD1563458_PREDICTED	XM_225290.3	XM_225290.3		306883	109504783	XM_225290.3	RGD1563458_predicted	XP_225290.1	ILMN_1354231	0001660070	S	1000	GGCTGCTGAGCGATGCCACGATGGAGAAAGACGAGTCACACGCGGGAAAG	17	-	36511114-36511163	17p12	PREDICTED: Rattus norvegicus similar to D0H6S2654E protein (predicted) (RGD1563458_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644165-S	ILMN_62480	AHCYL1_PREDICTED	XM_342312.3	XM_342312.3		362013	109465433	XM_342312.3	Ahcyl1_predicted	XP_342313.3	ILMN_1366513	0000070647	S	1433	CAGAAATTGATGTGACCAGCCTCCGCACTCCAGAGCTAACATGGGAGCGC	2	-	203215901-203215937:203216022-203216034	2q34	PREDICTED: Rattus norvegicus S-adenosylhomocysteine hydrolase-like 1 (predicted) (Ahcyl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657012-S	ILMN_60542	LOC360618	XM_340893.3	XM_340893.3		360618	109488941	XM_340893.3	LOC360618	XP_340894.3	ILMN_1360626	0006020537	S	1684	ATGCGGTCAGTGGTCTCCACAGTGCTAAGGATCCCTGCCCAGACAAGGCA	10	-	87402815-87402864	10q31	PREDICTED: Rattus norvegicus similar to ORM1-like 3 (LOC360618), mRNA.					
Rattus norvegicus	RefSeq	GI_62656513-S	ILMN_284370	TRPV3	NM_001025757.1	NM_001025757.1		497948	71043925	NM_001025757.1	Trpv3	NP_001020928.1	ILMN_1358056	0000840017	S	2279	GGACTTCCGGCTGTGCCTGAGGATCAACGAGGTGAAGTGGACTGAATGGA	10	+	60170697-60170746	10q24	Rattus norvegicus transient receptor potential cation channel, subfamily V, member 3 (Trpv3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus [goid 9266] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus [goid 9266] [evidence ISS]	Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62649019-S	ILMN_53056	LOC500466	XM_580070.1	XM_580070.1		500466	62649019	XM_580070.1	LOC500466	XP_580070.1	ILMN_1353363	0005860164	S	2264	GGCTCTGCTGCCTTTCCACTTTCCAAACGAAACCAAGGCTGTGTCCGAGG					PREDICTED: Rattus norvegicus LOC500466 (LOC500466), mRNA.					
Rattus norvegicus	RefSeq	GI_62657701-S	ILMN_63481	LOC501758	XM_577158.1	XM_577158.1		501758	62657701	XM_577158.1	LOC501758	XP_577158.1	ILMN_1358734	0001740364	S	772	GCAGACCTATCAGAATCACAACAGACTTCTCGCCAGAAACTATGAAGGCT					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC501758), mRNA.					
Rattus norvegicus	RefSeq	GI_62646344-S	ILMN_273284	RGD1561934_PREDICTED	XR_008761.1	XR_008761.1		499940	109471288	XR_008761.1	RGD1561934_predicted		ILMN_1370210	0006860288	S	623	TCCCCACGCGCATACACATTCCAGGACGCCGGATCATGTGCAGATCGTCT				3q42	PREDICTED: Rattus norvegicus similar to TP53-target gene 5 protein (TP53-inducible gene 5 protein) (predicted) (RGD1561934_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638692-S	ILMN_299972	RGD1561446_PREDICTED	XM_577708.1	XM_577708.1		502249	62638692	XM_577708.1	RGD1561446_predicted	XP_577708.1	ILMN_1368186	0002260402	S	1205	GCAAAAGATCCACTGTGGCTGGTCGTCTCAGGCCACTACCAATGACACCA	1	+	50887956-50888005	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1561446_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659228-S	ILMN_264686	CCDC93	NM_001024997.1	NM_001024997.1		304743	68163450	NM_001024997.1	Ccdc93	NP_001020168.1	ILMN_1373527	0005910048	S	2226	CCATGGTGTGGATGACACATAGAAACCTACGAAGAAGCGTGGGCAGTGCC	13	+	33534060-33534109	13q11	Rattus norvegicus coiled-coil domain containing 93 (Ccdc93), mRNA.				MGC109336	MGC109336
Rattus norvegicus	RefSeq	GI_62667276-S	ILMN_295856	RGD1564923_PREDICTED	XM_001053711.1	XM_001053711.1		302591	109512354	XM_001053711.1	RGD1564923_predicted	XP_001053711.1	ILMN_1362220	0002190100	S	2076	TGGGACCACCCAGCAAAACAGGGCCGACTATGTAACTATGTGTTTGGAAC				Xq35	PREDICTED: Rattus norvegicus similar to nuclear RNA export factor 2 (predicted) (RGD1564923_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656710-S	ILMN_64552	APPBP2	XM_220805.4	XM_220805.4		303396	109488724	XM_220805.4	Appbp2	XP_220805.3	ILMN_1353694	0004210047	S	2238	GCGTCTTGTTGTCAGCATGTGCCGCGTGTAAGTAGTCCCACACTCTCACC	10	-	73464259-73464308	10q26	PREDICTED: Rattus norvegicus amyloid beta precursor protein (cytoplasmic tail) binding protein 2 (Appbp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18777698-S	ILMN_301809	LTC4S	NM_053639.2	NM_053639.2		114097	18777698	NM_053639.2	Ltc4s	NP_446091.2	ILMN_1364526	0003990132	S	160	GTTCGAGCGCGTCTTCCGAGCCCAGGTAAATTGCAGCGAGTACTTTCCGC	10	-	35787564-35787590:35787667-35787689	10q22	Rattus norvegicus leukotriene C4 synthase (Ltc4s), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence IEA]; The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence ISS]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence TAS]	Catalysis of the reaction: leukotriene C4 = leukotriene A4 + glutathione [goid 4464] [evidence IDA]; Catalysis of the reaction: leukotriene C4 = leukotriene A4 + glutathione [goid 4464] [evidence ISS]; Catalysis of the reaction: leukotriene C4 = leukotriene A4 + glutathione [goid 4464] [evidence IDA]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642354-S	ILMN_60233	RGD1307934_PREDICTED	XM_219870.4	XM_219870.4		293953	109460146	XM_219870.4	RGD1307934_predicted	XP_219870.4	ILMN_1374342	0006650670	S	1494	GAGCATGTCGAATGGATCAGGCATACTTGTGGAGAGTGCCTTGGCCAGTG	1	-	248297630-248297679	1q54	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 19, ERATO Doi 386, expressed (predicted) (RGD1307934_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393199-S	ILMN_275655	CSF3	NM_017104.1	NM_017104.1		25610	8393199	NM_017104.1	Csf3	NP_058800.1	ILMN_1349473	0001980025	S	860	GCTCCAGGCACCCCATTCTGTGGTGGTACCCAAGAAATCACATTGAGCCC	10	+	87475928-87475977	10q31	Rattus norvegicus colony stimulating factor 3 (granulocyte) (Csf3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649065-S	ILMN_279926	TRIM14_PREDICTED	XM_001072308.1	XM_001072308.1		313236	109476443	XM_001072308.1	Trim14_predicted	XP_001072308.1	ILMN_1370734	0003850324	S	1514	GTCTTCCTGGACTACGAGGCCGGCATTCTGACCTTCTACGACGTGGCGGG				5q22	PREDICTED: Rattus norvegicus tripartite motif protein 14 (predicted) (Trim14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865429-A	ILMN_262483	FTS	NM_001011926.1	NM_001011926.1		291906	58865429	NM_001011926.1	Fts	NP_001011926.1	ILMN_1376475	0005700181	S	961	CATGTTGCTGGCCTGTCATGGGTAAAGCCTGGCTCAGTGCAACCTTTCAG	19	+	17044349-17044398	19p11	Rattus norvegicus fused toes (Fts), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein binding [goid 32092] [evidence IEA]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]	MGC109405	MGC109405
Rattus norvegicus	RefSeq	GI_62662722	ILMN_276580	RGD1311793_PREDICTED	XM_001066723.1	XM_001066723.1		306506	109504297	XM_001066723.1	RGD1311793_predicted	XP_001066723.1	ILMN_1650690	0003290440	S	4232	GATGATGAAGTTTGCCGAGAAGGCGGTAGAACGAAGGCGGGGTGTGGAGC				16q12.2	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 8, ERATO Doi 82, expressed (predicted) (RGD1311793_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647705-S	ILMN_269393	RGD1560795_PREDICTED	XR_008912.1	XR_008912.1		297402	109473807	XR_008912.1	RGD1560795_predicted		ILMN_1363007	0000580181	S	1006	AGGTGAAGAGGGCGGGGTCTGATTCACAGAGAGGACCGAGGGCATCGTGT				4q34	PREDICTED: Rattus norvegicus similar to Sepiapterin reductase (SPR) (predicted) (RGD1560795_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641614-S	ILMN_262452	PDDC1_PREDICTED	XM_001062531.1	XM_001062531.1		309110	109463192	XM_001062531.1	Pddc1_predicted	XP_001062531.1	ILMN_1371952	0003120088	S	752	CTGATCCTTACTCGATGGGACACAGCCTCCGTTGGGGCCTTGTGGAATGC				1q41	PREDICTED: Rattus norvegicus Parkinson disease 7 domain containing 1 (predicted) (Pddc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661761	ILMN_266049	LOC306079	XM_001073423.1	XM_001073423.1		306079	109502768	XM_001073423.1	LOC306079	XP_001073423.1	ILMN_1651112	0000520541	S	414	AGGGCAGAGAGATGGGAGGGAGCGTTTCATGGAGGTTGACCGAGTGGCCT				15q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3100001N19 (LOC306079), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978668-A	ILMN_53283	ABCC2	XM_577883.2	XM_577883.2		25303	109460364	XM_577883.2	Abcc2	XP_577883.2	ILMN_1376569	0001740324	S	1229	TCTCCCAGTGCACGGTCATCACCATCGCTCACAGGCTGCACACCATCATG	1|NW_047592.1	+	40869-40918		PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 2 (Abcc2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of drugs into, out of, within or between cells [goid 6855] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence TAS]; The directed movement of prostaglandins into, out of, within or between cells [goid 15732] [evidence IMP]; The regulation of the levels, transport, and metabolism of chloride ions within a cell or between a cell and its external environment [goid 30644] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methotrexate stimulus. Methotrexate is 4-amino-10-methylformic acid, a folic acid analogue that is a potent competitive inhibitor of dihydrofolate reductase [goid 31427] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27707789-S	ILMN_60659	LOC317352	XM_228733.1	XM_228733.1		317352	27707789	XM_228733.1	LOC317352	XP_228733.1	ILMN_1357265	0006650750	S	498	GAGATAACAGAACCTGATGAGACACCAGCACCCTCTGGGACACCAGCACC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700113O17 (LOC317352), mRNA.					
Rattus norvegicus	RefSeq	GI_62658611-S	ILMN_264794	TRFR2_PREDICTED	XM_001068938.1	XM_001068938.1		288562	109497054	XM_001068938.1	Trfr2_predicted	XP_001068938.1	ILMN_2038910	0000060681	S	2527	ACGCTACAGGGGGCAGCCAACGCACTCAGTGGCGACGTTTGGAACATCGA				12q12	PREDICTED: Rattus norvegicus transferrin receptor 2 (predicted) (Trfr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660413-S	ILMN_277708	COMMD8_PREDICTED	XM_001069497.1	XM_001069497.1		289603	109500479	XM_001069497.1	Commd8_predicted	XP_001069497.1	ILMN_1360106	0006650358	S	1235	CATGCTCGCTTTCTTGGGAGACCATGGTCTGAGAAAACCATGGAGGCAGC				14p11	PREDICTED: Rattus norvegicus COMM domain containing 8 (predicted) (Commd8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638281-S	ILMN_275303	RGD1565235_PREDICTED	XM_001054171.1	XM_001054171.1		292453	109514628	XM_001054171.1	RGD1565235_predicted	XP_001054171.1	ILMN_1370423	0001980114	S	388	GCCAGCAGGACCGTGAGTCAATGGCAGAACAACAGGGAAATAGCCCAGAG					PREDICTED: Rattus norvegicus similar to Retinoic acid early inducible protein 1 gamma precursor (RAE-1gamma) (predicted) (RGD1565235_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758651-S	ILMN_278156	GRIPAP1	NM_053807.1	NM_053807.1		116493	16758651	NM_053807.1	Gripap1	NP_446259.1	ILMN_1370036	0000060309	S	2756	GAAGGGCAGGGAGTTTTCCTTTTCGGCTCTGGTTCCCAGGGTCATCTGCC	X	-	26713656-26713705	Xq13	Rattus norvegicus GRIP1 associated protein 1 (Gripap1), mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]			Grasp1	Grasp1
Rattus norvegicus	RefSeq	GI_62666674-S	ILMN_66457	LOC367759	XM_576936.1	XM_576936.1		367759	62666674	XM_576936.1	LOC367759	XP_576936.1	ILMN_1374569	0004150088	S	783	GACCTAAGGAAGCTTTGGCTGGAAGGAGGGAACGCCCTAGCGAGTGGAGT					PREDICTED: Rattus norvegicus similar to glycosyltransferase 28 domain containing 1 (LOC367759), mRNA.					
Rattus norvegicus	RefSeq	GI_13928873-S	ILMN_278636	FOXM1	NM_031633.1	NM_031633.1		58921	13928873	NM_031633.1	Foxm1	NP_113821.1	ILMN_1356320	0002900465	S	3274	AGGTGGCCTGATCTCGGAATTGAGTGAGGGGTGATGGAGCCCGGAGATGA	4	+	165394569-165394618	4q42	Rattus norvegicus forkhead box M1 (Foxm1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660620-S	ILMN_63671	LOC360954	XM_341232.2	XM_341232.2		360954	62660620	XM_341232.2	LOC360954	XP_341233.2	ILMN_1354401	0001500332	S	819	CCCTGAAGGCATTACATGTGCCTAGATGGACTCAGACAGCCCCTCTGCCC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC360954), mRNA.					
Rattus norvegicus	RefSeq	GI_9506824-S	ILMN_291579	JAG1	NM_019147.1	NM_019147.1		29146	9506824	NM_019147.1	Jag1	NP_062020.1	ILMN_1354788	0002690368	S	5443	CCTGGCTCACCACGGAGCCCAGGAAGATACTTTGTATTGTCCTATTAGTG	3	-	125181159-125181208	3q36	Rattus norvegicus jagged 1 (Jag1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence NAS]; The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form. An epithelial sheet is a flat surface consisting of closely packed epithelial cells [goid 2011] [evidence ISS]; The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form. An epithelial sheet is a flat surface consisting of closely packed epithelial cells [goid 2011] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of myeloid cell differentiation [goid 45639] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of myeloid cell differentiation [goid 45639] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway [goid 45747] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway [goid 45747] [evidence IEA]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEA]	Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence TAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence ISS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666422-S	ILMN_51863	LOC501506	XM_576906.1	XM_576906.1		501506	62666422	XM_576906.1	LOC501506	XP_576906.1	ILMN_1362871	0002060484	S	4444	CATTTTGGTGGTCACTATCCTCCACACAGAGTCACTGAAGAACTTGTTCG				Xq11	PREDICTED: Rattus norvegicus similar to kaiso protein (LOC501506), mRNA.					
Rattus norvegicus	RefSeq	Rn.9073	ILMN_280190	GBAS	NM_001017486.1	NM_001017486.1		498174	62945327	NM_001017486.1	Gbas	NP_001017486.1	ILMN_1530381	0007040280	S	244	TAGATGCTTACAACAAAATTTGTCAAGAAGTGTTACCAAAGATCCATGAA	12	+	27942233-27942254:27949393-27949420	12q13	Rattus norvegicus glioblastoma amplified sequence (Gbas), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62658797-S	ILMN_280190	GBAS	NM_001017486.1	NM_001017486.1		498174	62945327	NM_001017486.1	Gbas	NP_001017486.1	ILMN_1350183	0000770193	S	720	AGGGAGGACATACGGAACGCAGCCTGGCACAAACATGGCTGGGAGGAACT	12	+	27959601-27959650	12q13	Rattus norvegicus glioblastoma amplified sequence (Gbas), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_9507168-S	ILMN_271750	SYT3	NM_019122.1	NM_019122.1		25731	9507168	NM_019122.1	Syt3	NP_061995.1	ILMN_1372396	0004810711	S	1737	AGAACACTGGGCAGAGATGCTGGCTAACCCTCGCAAGCCTGTGGAGCACT	1	+	94877405-94877454	1q22	Rattus norvegicus synaptotagmin III (Syt3), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence NAS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IDA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IDA]	SIII	SIII
Rattus norvegicus	RefSeq	GI_62654802-S	ILMN_52983	LOC501112	XM_576530.1	XM_576530.1		501112	62654802	XM_576530.1	LOC501112	XP_576530.1	ILMN_1351064	0005890500	S	441	AGGTATAGAAGAGAGTGAAGACTACCAGCTCAAAGGACCAGTAAATATCG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC501112), mRNA.					
Rattus norvegicus	RefSeq	GI_16758645	ILMN_69844	SEC14L2	NM_053801.1	NM_053801.1		116486	16758645	NM_053801.1	Sec14l2	NP_446253.1	ILMN_1649863	0006520341	S	1179	GAGAAGTTGAATCAGCAGGGGGCAGTCACCCCCAAATAACATCTCCCTCC				14q21	Rattus norvegicus SEC14-like 2 (S. cerevisiae) (Sec14l2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol [goid 45542] [evidence IPI]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence IDA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Catalysis of the transfer of a protein from one side of a membrane to the other [goid 8320] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Spf	Spf
Rattus norvegicus	RefSeq	GI_62666658-S	ILMN_65729	LOC300303	XM_213108.3	XM_213108.3		300303	62666658	XM_213108.3	LOC300303	XP_213108.2	ILMN_1356015	0003450397	S	473	GCTCCCGGAGGTCGTAACAAAGTCCCACAGAAAAGAGTAAAACTTGTTGA				Xq14	PREDICTED: Rattus norvegicus similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38) (LOC300303), mRNA.					
Rattus norvegicus	RefSeq	GI_20302096-S	ILMN_272680	PIGL	NM_138901.1	NM_138901.1		192263	20302096	NM_138901.1	Pigl	NP_620256.1	ILMN_1349061	0002640563	S	1755	GGTCTCTAGCACGGCATAAATGTGTGTGCCACTTGGGTTCTGGAGGCAGG	10	+	48689234-48689283	10q23	Rattus norvegicus phosphatidylinositol glycan, class L (Pigl), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Loosely bound to one surface of the endoplasmic reticulum membrane, but not integrated into the hydrophobic region [goid 42406] [evidence TAS]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane [goid 16254] [evidence ISS]	Catalysis of the reaction: N-acetyl-D-glucosaminylphosphatidylinositol + H2O = D-glucosaminylphosphatidylinositol + acetate. The second step enzyme catalyzing the biosynthesis of glycosylphosphatidylinositol (GPI), used to anchor various eukaryotic proteins to the cell-surface membrane. Catalyzes the N-deacetylation of GlcNAc-PI to GlcN-PI [goid 225] [evidence IMP]; Catalysis of the reaction: N-acetyl-D-glucosaminylphosphatidylinositol + H2O = D-glucosaminylphosphatidylinositol + acetate. The second step enzyme catalyzing the biosynthesis of glycosylphosphatidylinositol (GPI), used to anchor various eukaryotic proteins to the cell-surface membrane. Catalyzes the N-deacetylation of GlcNAc-PI to GlcN-PI [goid 225] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661479-S	ILMN_262882	RGD1306911_PREDICTED	XM_001055627.1	XM_001055627.1		290223	109502410	XM_001055627.1	RGD1306911_predicted	XP_001055627.1	ILMN_1353043	0002360575	S	652	TCATGGCTGAGGAAGCAGCTGTGTTTGCCAAGTACCTGGCCCATGGGCTA				15p13	PREDICTED: Rattus norvegicus similar to CG10671-like (predicted) (RGD1306911_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666474-S	ILMN_54949	LOC501510	XM_576909.1	XM_576909.1		501510	62666474	XM_576909.1	LOC501510	XP_576909.1	ILMN_1351730	0005290672	S	264	GGCCTGAAGCATTGGATGGTGGTGAATGAGTGTGTGGATGGTACAGTCTG					PREDICTED: Rattus norvegicus similar to protein kinase C inhibitor (LOC501510), mRNA.					
Rattus norvegicus	RefSeq	GI_62648486-S	ILMN_48867	LOC500378	XM_575736.2	XM_575736.2		500378	109472872	XM_575736.2	LOC500378	XP_575736.1	ILMN_1360202	0003130014	S	738	TAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCTA	4|NW_047708.1	+	245010-245059		PREDICTED: Rattus norvegicus similar to Protein C1orf77 homolog (LOC500378), mRNA.					
Rattus norvegicus	RefSeq	GI_6981575-S	ILMN_283564	SERPINA3K	NM_012657.1	NM_012657.1		24794	6981575	NM_012657.1	Serpina3k	NP_036789.1	ILMN_1371501	0005670048	S	1494	GTGCACTGGAGCCTTTGGATTGTCAGTGTGCAGGCACTTAGGACCCTTGG	6	-	128379515-128379564	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A, member 3K (Serpina3k), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	CPi-21; Spin2; Spin2b; SPI2	CPi-21; Spin2; Spin2b; SPI2
Rattus norvegicus	RefSeq	GI_62666192	ILMN_62530	LOC502446	XM_577927.1	XM_577927.1		502446	62666192	XM_577927.1	LOC502446	XP_577927.1	ILMN_1650228	0006900463	S	806	CTGTGGATCTGGATGCAAATCCTGGTGGCAAGGAGCACGGGGTTGTCTAG					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502446), mRNA.					
Rattus norvegicus	RefSeq	GI_27229293-S	ILMN_301332	PYCARD	NM_172322.1	NM_172322.1		282817	27229293	NM_172322.1	Pycard	NP_758825.1	ILMN_1372174	0001240372	S	264	TATGGAAGAGTCTGGAGCTGTGGCTACTGCAACCAGTGTCCCTGCTCAGG	1	-	187276579-187276621:187276852-187276858	1q36	Rattus norvegicus PYD and CARD domain containing (Pycard), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; A series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor [goid 33209] [evidence IEA]; A series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor [goid 33209] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43280] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a Pyrin (PAAD/DAPIN) domain, a protein-protein interaction domain that has the same fold as the Death domain [goid 32090] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Asc	Asc
Rattus norvegicus	RefSeq	GI_62654428-S	ILMN_278825	LTF_PREDICTED	XM_236657.3	XM_236657.3		301034	62654428	XM_236657.3	Ltf_predicted	XP_236657.3	ILMN_1356301	0006400500	S	2122	CCAACATGGGAGAAGGTCCGGGTTCAGAGGCCAAAATGCATGGAGAAGCG	8	+	115438539-115438588	8q32	PREDICTED: Rattus norvegicus lactotransferrin (predicted) (Ltf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577032-S	ILMN_287782	OLR289	NM_001000767.1	NM_001000767.1		405041	47577032	NM_001000767.1	Olr289	NP_001000767.1	ILMN_1361770	0002120068	S	413	GGCCCATCTGTGTCCTGCTCACAGGTATTGTGTGGCTTATTGGCATAGCC	1	+	200220358-200220407	1q41	Rattus norvegicus olfactory receptor 289 (Olr289), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr289	Olr289
Rattus norvegicus	RefSeq	GI_62651580-S	ILMN_277497	LOC362801	XM_001069822.1	XM_001069822.1		362801	109479084	XM_001069822.1	LOC362801	XP_001069822.1	ILMN_1358001	0006380204	S	2615	TCTCAGAGGACGTGGTGAGCTTCTTTGCCCGAGAACGCATTGACGGAAGC					PREDICTED: Rattus norvegicus hypothetical LOC362801 (LOC362801), mRNA.					
Rattus norvegicus	RefSeq	GI_62646763-S	ILMN_57381	STEAP1_PREDICTED	XM_216315.4	XM_216315.4		297738	109471677	XM_216315.4	Steap1_predicted	XP_216315.4	ILMN_1349306	0002190452	S	1600	CAGAGCAAACTGGGAATTGTCTCTCTTCTTCTGGGCACGGTACACGCTTC	4	+	24969792-24969794:24972758-24972804	4q12	PREDICTED: Rattus norvegicus six transmembrane epithelial antigen of the prostate 1 (predicted) (Steap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865651-A	ILMN_271438	XKR6	NM_001012042.1	NM_001012042.1		305960	58865651	NM_001012042.1	Xkr6	NP_001012042.1	ILMN_1376928	0000510059	S	2624	CCAAAAGCAAAGGCATAGAAGCCCCTCTCTCTGTTCAGTTTCTCCTGCCC				15p12	Rattus norvegicus X Kell blood group precursor related family member 6 homolog (Xkr6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1310719; XRG6	RGD1310719; XRG6
Rattus norvegicus	RefSeq	GI_27687518	ILMN_48534	RGD1563050_PREDICTED	XM_226772.2	XM_226772.2		294748	109464395	XM_226772.2	RGD1563050_predicted	XP_226772.1	ILMN_1649801	0003830446	S	1	ATGCGGCCGTCTCCTATGTCTGCTATCCAGAACCTTCACTCTTTCGACCC	2	+	45173463-45173512	2q14	PREDICTED: Rattus norvegicus similar to Chain , Human Translation Initiation Factor Eif1, Nmr, 29 Structures (predicted) (RGD1563050_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645568-S	ILMN_291676	LOC687958	XM_001080663.1	XM_001080663.1		687958	109470591	XM_001080663.1	LOC687958	XP_001080663.1	ILMN_1367996	0006400180	S	843	GCCCAAGATTCTGAGCAGGGACGTCTTGTGGAAGCTGCGATGTTTCCTCT					PREDICTED: Rattus norvegicus hypothetical protein LOC687958 (LOC687958), mRNA.					
Rattus norvegicus	RefSeq	GI_62718205-S	ILMN_48008	LOC501322	XM_576734.1	XM_576734.1		501322	62718205	XM_576734.1	LOC501322	XP_576734.1	ILMN_1370815	0000050537	S	85	AGGACATGGGGCAGCAGAGTTTGGCGGAGCTGTGGGAGAGATTGAGGCGC					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501322), mRNA.					
Rattus norvegicus	RefSeq	GI_31342209-S	ILMN_299121	IGF2BP1	NM_175594.2	NM_175594.2		303477	31342209	NM_175594.2	Igf2bp1	NP_783184.1	ILMN_1349651	0005080148	S	2047	GGCCTGAGAATGAGTGGGAATCAGGGCGTTTGGGTCTGGCTGGAGATCAG	10	-	84671092-84671141	10q31	Rattus norvegicus insulin-like growth factor 2 mRNA binding protein 1 (Igf2bp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]	A process by which RNA is transported to, or maintained in, a specific location [goid 6403] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the 3' untranslated region of an mRNA molecule [goid 3730] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any substance involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome [goid 45182] [evidence ISS]; Any substance involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome [goid 45182] [evidence IEA]; Interacting selectively with the 5' untranslated region of an mRNA molecule [goid 48027] [evidence ISS]; Interacting selectively with the 5' untranslated region of an mRNA molecule [goid 48027] [evidence IEA]	Imp1; ZBP1	Imp1; ZBP1
Rattus norvegicus	RefSeq	GI_16758153-S	ILMN_278996	STRBP	NM_053416.1	NM_053416.1		84476	16758153	NM_053416.1	Strbp	NP_445868.1	ILMN_1365116	0000840142	S	2305	CCAGCCCCTTCGTTGTAGGGAAGTCTAGCAGCTCAAAGTTGACGTTTAAG	3	-	17338918-17338967	3q11	Rattus norvegicus spermatid perinuclear RNA binding protein (Strbp), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence IEA]	Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; Behavior that is dependent upon the sensation of a mechanical stimulus [goid 7638] [evidence ISS]; Behavior that is dependent upon the sensation of a mechanical stimulus [goid 7638] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with single-stranded RNA [goid 3727] [evidence ISS]; Interacting selectively with single-stranded RNA [goid 3727] [evidence IEA]	Spnr	Spnr
Rattus norvegicus	RefSeq	GI_62662816-S	ILMN_269220	BRF2	NM_001024773.1	NM_001024773.1		306542	67078471	NM_001024773.1	Brf2	NP_001019944.1	ILMN_1372678	0000940605	S	1609	GGTGTGAACAAGCTGGCATTTGAGCAGTATCCACCGTTCCATGACAGGAG	16	+	69254900-69254949	16q12.4	Rattus norvegicus BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like (Brf2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654717-S	ILMN_48803	RGD1310693_PREDICTED	XM_236938.4	XM_236938.4		316238	109485754	XM_236938.4	RGD1310693_predicted	XP_236938.2	ILMN_1372587	0006020398	S	655	GCTTGAGAAGGCAGACTTGGAGCCCTCACTGGATTTCCTGGACTCCCTGG	9	+	10413623-10413672	9q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700027N10 (predicted) (RGD1310693_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650302-S	ILMN_52881	LOC500615	XM_580094.1	XM_580094.1		500615	62650302	XM_580094.1	LOC500615	XP_580094.1	ILMN_1373334	0006520400	S	507	TGTGGAGCCCAAGCTGGCCACAAGATAGTGGTGCTCCTACTTCAGCCTGC					PREDICTED: Rattus norvegicus LOC500615 (LOC500615), mRNA.					
Rattus norvegicus	RefSeq	GI_62652095-S	ILMN_51823	E2F7_PREDICTED	XM_235118.4	XM_235118.4		314818	109480560	XM_235118.4	E2f7_predicted	XP_235118.4	ILMN_1356413	0006020138	S	3499	CCTGGCAGCCTCGGTGATCCGGCCTTTAGAAGAGAAAGGAACCAATCCCG	7	+	49751037-49751086	7q21	PREDICTED: Rattus norvegicus E2F transcription factor 7 (predicted) (E2f7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718161-S	ILMN_68711	LOC501305	XM_576718.2	XM_576718.2		501305	109513246	XM_576718.2	LOC501305	XP_576718.1	ILMN_1361524	0003710408	S	152	AGGCCCAGAACCCAGACGTTGGGAGAGAAACATCATCCCCTGGCACTGAC	Un|NW_047874.1	-	463784-463819:464450-464463		PREDICTED: Rattus norvegicus hypothetical LOC501305 (LOC501305), mRNA.					
Rattus norvegicus	RefSeq	GI_62653719-S	ILMN_265234	ODF3L1_PREDICTED	XM_001073897.1	XM_001073897.1		315695	109484764	XM_001073897.1	Odf3l1_predicted	XP_001073897.1	ILMN_1361397	0006220300	S	616	ACGCGACCTGAGCCGTCTGTCTACCAGAACCGCAGCCCCGTGTTTAGCAT				8q24	PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 3-like 1 (predicted) (Odf3l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577622-S	ILMN_265530	OLR540	NM_001000321.1	NM_001000321.1		295792	47577622	NM_001000321.1	Olr540	NP_001000321.1	ILMN_2039851	0000150021	S	886	GATGTGAAAGAGGCAGCCAAGAGGTCAGTTTGTAGGGAGAGGAGTGGCCC	3	-	70480158-70480207	3q24	Rattus norvegicus olfactory receptor 540 (Olr540), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr540	Olr540
Rattus norvegicus	RefSeq	GI_62652179-S	ILMN_56215	LOC314858	XM_235171.3	XM_235171.3		314858	62652179	XM_235171.3	LOC314858	XP_235171.3	ILMN_1362264	0001190601	S	320	CGAGGGCACAAGACAGCGAGGGCACCTTTGGCAACACGTAAACCTCATTC				7q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4432406C05 (predicted) (LOC314858), mRNA.					
Rattus norvegicus	RefSeq	GI_27465540-S	ILMN_274364	AQP11	NM_173105.1	NM_173105.1		286758	27465540	NM_173105.1	Aqp11	NP_775128.1	ILMN_1373630	0005360270	S	1058	CTCAAACGAAGTCAGTGGACGATCAGGCTGGATGTGACGGTTTGGGCACC	1	-	154973977-154974026	1q32	Rattus norvegicus aquaporin 11 (Aqp11), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The directed movement of glycerol into, out of, within or between cells. Glycerol is 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 15793] [evidence ISS]; The directed movement of glycerol into, out of, within or between cells. Glycerol is 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 15793] [evidence IDA]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence ISS]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IDA]; Any process that reduces the pH of the endosomal lumen, measured by the concentration of the hydrogen ion [goid 48388] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652478-S	ILMN_289922	RGD1560979_PREDICTED	XR_008629.1	XR_008629.1		366941	109482293	XR_008629.1	RGD1560979_predicted		ILMN_1356958	0001170025	S	249	CTGTGATGAGTCCATGTATGTCAAGCTAGTGGAGGCGCTTTGTGCTGAGC				7q33	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031709 (predicted) (RGD1560979_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651444-S	ILMN_64279	RGD1564082_PREDICTED	XM_578575.2	XM_578575.2		503052	109478537	XM_578575.2	RGD1564082_predicted	XP_578575.2	ILMN_1353601	0005050750	S	2337	AGTGAGAGACGGCCTTCAGGGGAGAAGAAGCCTGCAGAGCCCAAAGCCAT	6	+	110816911-110816921:110817790-110817828	6q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA G630009D10 gene (predicted) (RGD1564082_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659688-S	ILMN_64299	LMX1A_PREDICTED	XM_222902.4	XM_222902.4		289201	109498153	XM_222902.4	Lmx1a_predicted	XP_222902.3	ILMN_1350102	0000460594	S	1176	GCCTGGAGATCACATGCACCCCTACGGTGCTGAACCTCTTTTCCATGACC	13	+	83494697-83494722:83496462-83496485	13q24	PREDICTED: Rattus norvegicus LIM homeobox transcription factor 1 alpha (predicted) (Lmx1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664325-S	ILMN_61647	LOC498851	XM_579874.1	XM_579874.1		498851	62664325	XM_579874.1	LOC498851	XP_579874.1	ILMN_1355661	0006110471	S	207	GCTGTAGTAAATCTGCAACACAACGTGCGGAGGAATTTTGATCAGGAAGC					PREDICTED: Rattus norvegicus LOC498851 (LOC498851), mRNA.					
Rattus norvegicus	RefSeq	GI_62650173	ILMN_67674	CCNL2_PREDICTED	XM_216597.3	XM_216597.3		298686	62650173	XM_216597.3	Ccnl2_predicted	XP_216597.2	ILMN_1650840	0003440707	S	2167	TCTGTGCAATGCTGAGTGCAGGCCACCAGCTCGAGAGAAATTTTACGTGG				5q36	PREDICTED: Rattus norvegicus cyclin L2 (predicted) (Ccnl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465568-S	ILMN_275334	RATSG2	NM_173120.1	NM_173120.1		286900	27465568	NM_173120.1	Ratsg2	NP_775143.1	ILMN_1360978	0004120181	S	870	CCCAGTGATGGCCCTTTGGGGCAGAAGTCCTTGATGACAGACAGGGTGGT	1	+	120518595-120518644	1q22	Rattus norvegicus Ratsg2 (Ratsg2), mRNA.				Sels	Sels
Rattus norvegicus	RefSeq	GI_62663610-S	ILMN_288178	RGD1559146_PREDICTED	XR_007815.1	XR_007815.1		306976	109505946	XR_007815.1	RGD1559146_predicted		ILMN_1352803	0004200450	S	2151	TAAGCTGTGTAGCCAACGGTAAAGCATCCCCCCAGGTGAGCCAACCATCC				17q11	PREDICTED: Rattus norvegicus sim to piggyBac transposable elem. (predicted) (RGD1559146_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656783-S	ILMN_68223	LOC303456	XM_220851.3	XM_220851.3		303456	62656783	XM_220851.3	LOC303456	XP_220851.3	ILMN_1369097	0004010750	S	2325	GCAGACCAGGCTGACTTCACAGAGATCTGCTTCAGCCTCCAAAGTGCTAA				10q26	PREDICTED: Rattus norvegicus similar to Hypothetical WD-repeat protein CGI-48 (predicted) (LOC303456), mRNA.					
Rattus norvegicus	RefSeq	GI_62640392-S	ILMN_288374	RGD1562541_PREDICTED	XR_007526.1	XR_007526.1		499167	109462065	XR_007526.1	RGD1562541_predicted		ILMN_1366580	0000540026	S	346	GCCTGCTCTGAGAAAAAAGCTGCTGGCAAAAGGGGCATCCCAACTAAGAA				1q22	PREDICTED: Rattus norvegicus RGD1562541 (predicted) (RGD1562541_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647539-S	ILMN_48622	LOC502806	XM_578305.1	XM_578305.1		502806	62647539	XM_578305.1	LOC502806	XP_578305.1	ILMN_1369582	0002760086	S	4261	CCACACAGTGCTACAGACAAGAGCAAATTCCCTACAGCCCAATTACTTCC				4q31	PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC502806), mRNA.					
Rattus norvegicus	RefSeq	GI_52138608-S	ILMN_289796	FADS2	NM_031344.2	NM_031344.2		83512	52138608	NM_031344.2	Fads2	NP_112634.1	ILMN_1370220	0001090273	S	1475	TGGCTGGATGCCTACCTCCACAAATGAAGCAGCAGACCTCGTGGCACCCT				1q43	Rattus norvegicus fatty acid desaturase 2 (Fads2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; The chemical reactions and pathways resulting in the formation of fatty acids with a chain length of C18 or greater [goid 42761] [evidence TAS]	Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence TAS]; Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence ISS]; Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O [goid 4768] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	MGC93365; Fadsd6	MGC93365; Fadsd6
Rattus norvegicus	RefSeq	GI_62640757-S	ILMN_52857	RGD1559862_PREDICTED	XM_574479.2	XM_574479.2		499189	109458948	XM_574479.2	RGD1559862_predicted	XP_574479.2	ILMN_1356805	0006370524	S	1986	GAAGAGCTTCCAGAAGAGCCAGATGAAAGGGCGTGAGCAGTGGTCCAGGC	1	+	135557560-135557565:135566772-135566815	1q31	PREDICTED: Rattus norvegicus similar to hypothetical protein from EUROIMAGE 384293 (predicted) (RGD1559862_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656926-S	ILMN_278686	RGD1559709_PREDICTED	XM_001081385.1	XM_001081385.1		360615	109491793	XM_001081385.1	RGD1559709_predicted	XP_001081385.1	ILMN_1355302	0004560014	S	1013	CTTTCATGGCTAGTAAAGCTGTAAACGGGCGAGCCATCGAGCTGGCAAGG				10q31	PREDICTED: Rattus norvegicus similar to F-box protein 47 (predicted) (RGD1559709_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652380-S	ILMN_272515	RGD1561812_PREDICTED	XM_001057057.1	XM_001057057.1		503146	109482097	XM_001057057.1	RGD1561812_predicted	XP_001057057.1	ILMN_1373085	0000940452	S	573	GAGATTAGACCAGAGGTGCAGCAAGGACCTGTCTCTGGTGACTGCCTGTC				7q22	PREDICTED: Rattus norvegicus similar to Retinol dehydrogenase type II (RODH II) (29 k-protein) (predicted) (RGD1561812_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578032-S	ILMN_292985	OLR1060	NM_001000698.1	NM_001000698.1		404904	47578032	NM_001000698.1	Olr1060	NP_001000698.1	ILMN_1358446	0001690017	S	672	GTTCCCTTCAGCTCAACAGAGGAAAAAGGCCTTTTCTACCTGCGCGTCAC	7	-	7997923-7997972	7q11	Rattus norvegicus olfactory receptor 1060 (Olr1060), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1060	Olr1060
Rattus norvegicus	RefSeq	GI_47576828-S	ILMN_295306	OLR201	NM_001000190.1	NM_001000190.1		293342	47576828	NM_001000190.1	Olr201	NP_001000190.1	ILMN_1360507	0006900100	S	665	TCCTCCAGGCTGTGTTTAGACTTCCTTCTCAGGATGCCAGGCACAAGGCC	1	-	163070115-163070164	1q33	Rattus norvegicus olfactory receptor 201 (Olr201), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr201; ratchr1-163166306-163165362_ORF	Olr201; ratchr1-163166306-163165362_ORF
Rattus norvegicus	RefSeq	GI_50233921-S	ILMN_281251	FAH	NM_017181.2	NM_017181.2		29383	50233921	NM_017181.2	Fah	NP_058877.1	ILMN_1354201	0006380722	S	1219	CGATGTGGGGCAGGGGCAAACCAGGACCTTTCTTCTGGACGGAGATGAAG	1	-	140852076-140852078:140852079-140852125	1q31	Rattus norvegicus fumarylacetoacetate hydrolase (Fah), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6527] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6527] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid [goid 6559] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6572] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9072] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 4-fumarylacetoacetate + H2O = acetoacetate + fumarate [goid 4334] [evidence TAS]; Catalysis of the reaction: 4-fumarylacetoacetate + H2O = acetoacetate + fumarate [goid 4334] [evidence IEA]; Catalysis of the reaction: 4-fumarylacetoacetate + H2O = acetoacetate + fumarate [goid 4334] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657565-S	ILMN_274794	USP25_PREDICTED	XM_001065002.1	XM_001065002.1		304150	109493839	XM_001065002.1	Usp25_predicted	XP_001065002.1	ILMN_1363065	0004610315	S	3177	AAGCGGCAGAGCTGTTCGAGTCTGGAGAGGACCGAGAAGTGAGCAATGGC				11q11	PREDICTED: Rattus norvegicus ubiquitin specific protease 25 (predicted) (Usp25_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34854571-S	ILMN_270748	RGD1563778_PREDICTED	XM_001058654.1	XM_001058654.1		292417	109460906	XM_001058654.1	RGD1563778_predicted	XP_001058654.1	ILMN_1354526	0001190494	S	2012	CTGTAGCTTTTCACTGTGCTCTGGGATACCTCTGTTTCTTGGCACTTGGG				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1563778_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666863-S	ILMN_290640	SMS	NM_001033899.1	NM_001033899.1		363469	76559932	NM_001033899.1	Sms	NP_001029071.1	ILMN_1363944	0004810082	S	1331	GCCGGAGGACAATTAGACAGCCCTGCAAAGACTACGGAATGCACTGACCC	X	+	58870691-58870740	Xq21	Rattus norvegicus spermine synthase (Sms), mRNA.			Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC124869	MGC124869
Rattus norvegicus	RefSeq	GI_18959215-S	ILMN_269857	PGC	NM_133284.1	NM_133284.1		24864	18959215	NM_133284.1	Pgc	NP_579818.1	ILMN_1351652	0001410369	S	1173	CCTCAGGTCTTACTATGCCATCTTCGACATGGGCAACAACAAGGTGGGCC	9	-	8723767-8723816	9q12	Rattus norvegicus progastricsin (pepsinogen C) (Pgc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	PG1; Pg-1; Upg1	PG1; Pg-1; Upg1
Rattus norvegicus	RefSeq	GI_62640845-S	ILMN_293383	RGD1561859_PREDICTED	XR_007854.1	XR_007854.1		365280	109462124	XR_007854.1	RGD1561859_predicted		ILMN_1369140	0001400142	S	352	GGCCCGGAAGTGATGCTGTCCGTTATCAACATGAAGGAGGTCTGTCGGCG				1q22	PREDICTED: Rattus norvegicus similar to pyroglutamyl-peptidase I (predicted) (RGD1561859_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657999-S	ILMN_279163	TFRC	XM_001072774.1	XM_001072774.1		64678	109494512	XM_001072774.1	Tfrc	XP_001072774.1	ILMN_1360908	0003520369	S	2317	TGAAACGCTCTTCAGAAACCAGTTGGCCCTGGCTACGTGGACTATTCAGG				11q22	PREDICTED: Rattus norvegicus transferrin receptor (Tfrc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus [goid 10042] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transferrin to initiate a change in cell activity [goid 4998] [evidence IDA]; Combining with transferrin to initiate a change in cell activity [goid 4998] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_57526803-S	ILMN_299433	SUB1	NM_001009618.1	NM_001009618.1		192269	57526803	NM_001009618.1	Sub1	NP_001009618.1	ILMN_1357572	0005390286	S	73	CTACCGTCGCCCCTTCGCTCTCCTTGCCGGGAGAAATAGAAGCTCTTAAG	2	-	61428015-61428015:61430018-61430066	2q16	Rattus norvegicus SUB1 homolog (S. cerevisiae) (Sub1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109653; Rpo2tc1	MGC109653; Rpo2tc1
Rattus norvegicus	RefSeq	GI_62643873-S	ILMN_267050	RFX5_PREDICTED	XM_001053892.1	XM_001053892.1		310659	109467149	XM_001053892.1	Rfx5_predicted	XP_001053892.1	ILMN_1349788	0002350059	S	717	GGCACATGCTCACGTTCTCAAGGCAGGGGGGCTTGCCGAAGAGGAAGAAA				2q34	PREDICTED: Rattus norvegicus regulatory factor X, 5 (influences HLA class II expression) (predicted) (Rfx5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758545-S	ILMN_293910	STAG3	NM_053730.1	NM_053730.1		114522	16758545	NM_053730.1	Stag3	NP_446182.1	ILMN_1370743	0003830075	S	4032	GCTTTTGCCTGTTTGAAGTGGTGGGAGTTGGGTAGGGAGCTTTACCTCAG	12	+	17896950-17896993	12q11	Rattus norvegicus stromal antigen 3 (Stag3), mRNA.	A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence TAS]; A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence ISS]; A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them [goid 802] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A cohesin complex that mediates sister chromatid cohesion during meiosis; has a subunit composition distinct from that of the mitotic cohesin complex [goid 30893] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence TAS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665997-S	ILMN_274505	VGLL2_PREDICTED	XM_001058013.1	XM_001058013.1		309772	109510143	XM_001058013.1	Vgll2_predicted	XP_001058013.1	ILMN_1370417	0003610364	S	868	CACGAGGTCTACGCGCCCCACTTCGACCCGCGCTATGGGCCGCTGATAAT				20q11	PREDICTED: Rattus norvegicus vestigial like 2 homolog (Drosophila) (predicted) (Vgll2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640698-S	ILMN_50079	LRRC28_PREDICTED	XM_341870.3	XM_341870.3		361588	109458878	XM_341870.3	Lrrc28_predicted	XP_341871.2	ILMN_1359786	0005360278	S	954	CCCAGCAGAGGTGAAGGCAATAGGCACAGAGAAGGATCACGTCCTACCGC	1	-	122284742-122284791	1q22	PREDICTED: Rattus norvegicus leucine rich repeat containing 28 (predicted) (Lrrc28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742564-S	ILMN_62683	SRD5A1	NM_017070.3	NM_017070.3		24950	77681596	NM_017070.3	Srd5a1	NP_058766.2	ILMN_1364151	0003940288	S	809	CACTGTTCACACTCAGCACACTGCTCACCAGAGCGAAGCAGCACCATCAG	17	+	3868050-3868098:3877409-3877409	17p14	Rattus norvegicus steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) (Srd5a1), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6702] [evidence ISS]; The establishment of the sex of a male organism by physical differentiation [goid 46661] [evidence TAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; Any process that establishes and transmits the specification of sexual status of an individual organism [goid 7530] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor [goid 3865] [evidence TAS]; Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor [goid 3865] [evidence ISS]; Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor [goid 3865] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16627] [evidence IEA]	MGC156498	MGC156498
Rattus norvegicus	RefSeq	GI_12018299-S	ILMN_262379	AKAP6	NM_022618.1	NM_022618.1		64553	12018299	NM_022618.1	Akap6	NP_072140.1	ILMN_1367365	0003390066	S	8767	GGGAGAGCAGCTATGACCGATGCACTGCCTTTGGAGGCTTCTGTGTTAGA				6q23	Rattus norvegicus A kinase (PRKA) anchor protein 6 (Akap6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IDA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]		Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence IDA]	mAkap	mAkap
Rattus norvegicus	RefSeq	GI_47577478-S	ILMN_273311	OLR686	NM_001000355.1	NM_001000355.1		295891	47577478	NM_001000355.1	Olr686	NP_001000355.1	ILMN_1364619	0006770333	S	400	ATCATGAACCGCAGGCTCTGTGTCAATCTTGTGATGGTGTCCTGGGCAGG	3	+	73534938-73534987	3q24	Rattus norvegicus olfactory receptor 686 (Olr686), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr686	Olr686
Rattus norvegicus	RefSeq	GI_62660033-S	ILMN_65962	MTF2	XM_341180.3	XM_341180.3		360905	109499339	XM_341180.3	Mtf2	XP_341181.3	ILMN_1362374	0000460717	S	2066	GACTGTAGGACTAAGCCTTGTGTTCACTGCCTCGTGCTCTGTTGGTACAG	14	-	2190081-2190129:2190130-2190130	14p22	PREDICTED: Rattus norvegicus metal response element binding transcription factor 2 (Mtf2), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_22219441-S	ILMN_64246	VOF21	NM_147208.1	NM_147208.1		259228	22219441	NM_147208.1	Vof21	NP_671741.1	ILMN_1357300	0005290161	S	4518	CTGGCTGAGTGGCTCTCTGACTGCAATGACTGGTTATGAAGGGACCTTGC					Rattus norvegicus ischemia related factor vof-21 (Vof21), mRNA.					
Rattus norvegicus	RefSeq	GI_62638537-S	ILMN_54513	MRPL18_PREDICTED	XM_214751.3	XM_214751.3		292244	109457736	XM_214751.3	Mrpl18_predicted	XP_214751.1	ILMN_1359180	0001660403	S	722	GCCATGACAGAAAGTGGTGTGATGCTCCGGGAACCTCGAAGAGTCTATGA	1	+	42116100-42116149	1q11	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L18 (predicted) (Mrpl18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647919-S	ILMN_282796	RGD1564292_PREDICTED	XR_009132.1	XR_009132.1		502866	109473964	XR_009132.1	RGD1564292_predicted		ILMN_1370507	0002100008	S	460	TTTGTGCTGCCTCCTGCTAGAGAGATGGACCAGGATGCCCAGGCTCCAGA				4q34	PREDICTED: Rattus norvegicus similar to Nucleolar protein 1 (predicted) (RGD1564292_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653390-S	ILMN_50451	LOC503185	XM_578708.1	XM_578708.1		503185	62653390	XM_578708.1	LOC503185	XP_578708.1	ILMN_1374240	0001850088	S	582	ACCTCAGAGACCAGGGGTACAGGGGACTTTACCTCAGAGACCAGGGGTAC					PREDICTED: Rattus norvegicus similar to Per-hexamer repeat protein 5 (LOC503185), mRNA.					
Rattus norvegicus	RefSeq	GI_11560116-S	ILMN_293478	SLC26A1	NM_022287.1	NM_022287.1		64076	11560116	NM_022287.1	Slc26a1	NP_071623.1	ILMN_1350537	0001170537	S	3505	TCAGTTGCTGGTCCCAACTAAGGTCGTACTGGTCAGCCTGGTCGTGAGGC	14	+	1586667-1586716	14p22	Rattus norvegicus solute carrier family 26 (sulfate transporter), member 1 (Slc26a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IDA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence ISS]; The directed movement of oxalate into, out of, within or between cells. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals [goid 19532] [evidence IEA]; The directed movement of oxalate into, out of, within or between cells. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals [goid 19532] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]; The directed movement of oxalate into, out of, within or between cells. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals [goid 19532] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence IEA]; Catalysis of the transfer of chloride ions from one side of a membrane to the other [goid 15108] [evidence IEA]; Catalysis of the transfer of chloride ions from one side of a membrane to the other [goid 15108] [evidence ISS]; Catalysis of the transfer of sulfate ions (SO4 2-) from one side of a membrane to the other [goid 15116] [evidence IDA]; Catalysis of the transfer of sulfate ions (SO4 2-) from one side of a membrane to the other [goid 15116] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of oxalate from one side of the membrane to the other. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals [goid 19531] [evidence IEA]; Catalysis of the transfer of oxalate from one side of the membrane to the other. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals [goid 19531] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence IEA]; Catalysis of the transfer of chloride ions from one side of a membrane to the other [goid 15108] [evidence IEA]; Catalysis of the transfer of oxalate from one side of the membrane to the other. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals [goid 19531] [evidence IEA]	sat-1	sat-1
Rattus norvegicus	RefSeq	GI_62079262-S	ILMN_289994	LRRC1	NM_001014268.1	NM_001014268.1		367113	62079262	NM_001014268.1	Lrrc1	NP_001014290.1	ILMN_1358368	0001410397	S	1780	CAGGATGCTGCTCTCGCTCGCACCAAGTGCCTTATGCATCCCTCAGTCCA	8	-	82385207-82385256	8q31	Rattus norvegicus leucine rich repeat containing 1 (Lrrc1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647564-S	ILMN_49688	LOC502819	XM_578319.1	XM_578319.1		502819	62647564	XM_578319.1	LOC502819	XP_578319.1	ILMN_1360737	0002940292	S	286	GCGGCATGCAACCTGAAGATGAAGGGGATTATTTCTGTCTACAGGGTTCC				4q31	PREDICTED: Rattus norvegicus similar to IG KAPPA CHAIN V-V REGION K2 PRECURSOR (LOC502819), mRNA.					
Rattus norvegicus	RefSeq	GI_62645012-S	ILMN_60239	NDUFA8	XM_216044.4	XM_216044.4		296658	109468090	XM_216044.4	Ndufa8	XP_216044.2	ILMN_1371540	0002120390	S	214	CGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGCGCACTGAACTTCTT	3	-	15156824-15156873	3p11	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 (Ndufa8), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_34935653-S	ILMN_61972	LOC366769	XM_345756.1	XM_345756.1		366769	34935653	XM_345756.1	LOC366769	XP_345757.1	ILMN_1366422	0001190019	S	143	GAGCACTTATGGTATGCGTGTGAGCTGGATTCGTCAGCCTTCAGGGAAGG				6q33	PREDICTED: Rattus norvegicus similar to BWK3 (LOC366769), mRNA.					
Rattus norvegicus	RefSeq	GI_19173759-S	ILMN_274187	A1CF	NM_133400.1	NM_133400.1		170912	19173759	NM_133400.1	A1cf	NP_596891.1	ILMN_1351370	0000730671	S	1584	AAGCGCCTACGTGGATGAAGCAAAGAGGTACGCCGCAGAGCACACCCTAC	1	+	235957925-235957974	1q52	Rattus norvegicus APOBEC1 complementation factor (A1cf), mRNA.	A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [evidence TAS]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [evidence ISS]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 11870221] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [evidence ISS]	The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IMP]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence NAS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence IEA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [pmid 12896982] [evidence TAS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]	Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with single-stranded RNA [goid 3727] [evidence ISS]; Interacting selectively with single-stranded RNA [goid 3727] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IDA]; Catalysis of the reaction: cytosine + H2O = uracil + NH3 [goid 4131] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with single-stranded RNA [goid 3727] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with single-stranded RNA [goid 3727] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10781591] [evidence IPI]	Apobec-1	Apobec-1
Rattus norvegicus	RefSeq	GI_62666156-S	ILMN_60938	RGD1307434_PREDICTED	XM_342153.3	XM_342153.3		361858	109509607	XM_342153.3	RGD1307434_predicted	XP_342154.3	ILMN_1364751	0005910687	S	503	AGCCTGTGGAGGCGGAAGACCAGGAGAGTGAGATGAAAGGTGATGCAGAG	20	-	44415503-44415552	20q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410016F19 (predicted) (RGD1307434_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948493-S	ILMN_295640	ITGB6	NM_001004263.1	NM_001004263.1		311061	51948493	NM_001004263.1	Itgb6	NP_001004263.1	ILMN_1357529	0005360397	S	2330	CGGGAACCAATCCGCTGTACCGAGGCTCCACCAGCACTTTTAAGAACGTG	3	-	42286575-42286623:42291365-42291365	3q21	Rattus norvegicus integrin, beta 6 (Itgb6), mRNA.	A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94023	MGC94023
Rattus norvegicus	RefSeq	GI_62643549-S	ILMN_52864	LOC499635	XM_574958.1	XM_574958.1		499635	62643549	XM_574958.1	LOC499635	XP_574958.1	ILMN_2039162	0001070091	S	2425	GTGGTGTCACCGGTCTTTCTCCAGCTGCCCAGCTACGAGGAGGTCAAGTA					PREDICTED: Rattus norvegicus similar to keratin associated protein 10-6 (LOC499635), mRNA.					
Rattus norvegicus	RefSeq	GI_42538975-S	ILMN_291501	PGAP1	NM_201990.1	NM_201990.1		316400	42538975	NM_201990.1	Pgap1	NP_973719.1	ILMN_1367321	0002370377	S	2930	CGTAAGGCGTGAGGGAGGTAGTCGGAGCATGGTTCCAGTTCGTGGTGTAG	9	-	53263444-53263493	9q31	Rattus norvegicus post-GPI attachment to proteins 1 (Pgap1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]	The chemical reactions and pathways involving glycosylphosphatidylinositol anchors, molecular mechanisms for attaching membrane proteins to the lipid bilayer of cell membranes. Structurally they consist of a molecule of phosphatidylinositol to which is linked, via the C-6 hydroxyl of the inositol, a carbohydrate chain. This chain is in turn linked to the protein through an ethanolamine phosphate moiety, the amino group of which is in amide linkage with the C-terminal carboxyl of the protein chain, the phosphate group being esterified to the C-6 hydroxyl of the terminal mannose of the core carbohydrate chain [goid 6505] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IMP]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of myo-inositol into, out of, within or between cells. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms [goid 15798] [evidence IDA]; A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain [goid 16255] [evidence ISS]	Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IDA]; Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3 [goid 42578] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62640987-S	ILMN_64160	LOC497734	XM_579559.1	XM_579559.1		497734	62640987	XM_579559.1	LOC497734	XP_579559.1	ILMN_1351470	0002450687	S	1956	CTAGCTAGGGATGTGGGTCACAGCATCCATTAAATCCCATACTCACCAGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053496 (LOC497734), mRNA.					
Rattus norvegicus	RefSeq	GI_62657989-S	ILMN_65083	LRCH3_PREDICTED	XM_221380.3	XM_221380.3		303883	62657989	XM_221380.3	Lrch3_predicted	XP_221380.3	ILMN_1355607	0001570315	S	2410	CTGCACTCGGCCGGAGAGAGACACGGCTGCAGAGCAATTATGTTTGCCTC				11q22	PREDICTED: Rattus norvegicus leucine-rich repeats and calponin homology (CH) domain containing 3 (predicted) (Lrch3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650958-S	ILMN_276853	RGD1308089_PREDICTED	XM_001080822.1	XM_001080822.1		314249	109479542	XM_001080822.1	RGD1308089_predicted	XP_001080822.1	ILMN_1371636	0006450273	S	4360	GGTGAAGCCCTGTATGTCACCGCAGACCTTACCCTAGAGAACAACCGGCG				6q24	PREDICTED: Rattus norvegicus similar to common-site lymphoma leukemia guanine nucleotide exchange factor like (5N754) (predicted) (RGD1308089_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164130-S	ILMN_290526	TBRG1	NM_001009344.1	NM_001009344.1		300521	57164130	NM_001009344.1	Tbrg1	NP_001009344.1	ILMN_1349453	0002060632	S	1211	GACCTGCAGCACCTCAAGTCTCCATCCCAGTGTAGCCCAATTCAGTCTTC	8	-	38890931-38890980	8q21	Rattus norvegicus transforming growth factor beta regulator 1 (Tbrg1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC95119	MGC95119
Rattus norvegicus	RefSeq	GI_27681926-S	ILMN_49206	RGD1562074_PREDICTED	XM_236940.2	XM_236940.2		301253	109485808	XM_236940.2	RGD1562074_predicted	XP_236940.2	ILMN_1355263	0000060072	S	1395	CAGCCGCTTCTCACTCAGCCGCCTCTATGGTTCTCGGCGCAGCTGCTTGT	9	+	11061397-11061446	9q12	PREDICTED: Rattus norvegicus similar to expressed sequence AW125688 (predicted) (RGD1562074_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653764-S	ILMN_69344	LOC501008	XM_580149.1	XM_580149.1		501008	62653764	XM_580149.1	LOC501008	XP_580149.1	ILMN_1358547	0001570441	S	1320	AATCAGCTGGAGGAAGCAGGTGCCCAGAAGGGAACAGATCGGTCGCACTG					PREDICTED: Rattus norvegicus LOC501008 (LOC501008), mRNA.					
Rattus norvegicus	RefSeq	GI_62644120-S	ILMN_280860	AP4B1_PREDICTED	XM_001065231.1	XM_001065231.1		310746	109467314	XM_001065231.1	Ap4b1_predicted	XP_001065231.1	ILMN_1366737	0002340575	S	2586	GCCCTGCGTGGTTTCGTCTCTGTCCTGGAAACTGTGATTGGAACGGTTGG				2q34	PREDICTED: Rattus norvegicus adaptor-related protein complex AP-4, beta 1 (predicted) (Ap4b1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667093-S	ILMN_274027	RGD1562502_PREDICTED	XM_001053847.1	XM_001053847.1		363485	109512126	XM_001053847.1	RGD1562502_predicted	XP_001053847.1	ILMN_1358626	0000580168	S	701	GTGCTGCTCACACAGCCCCCATTGGTTAAATGATGCCCTTGTGCAAGTGG				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610029G23 (predicted) (RGD1562502_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644977-S	ILMN_58470	FBXW2_PREDICTED	XM_231162.4	XM_231162.4		311881	109468067	XM_231162.4	Fbxw2_predicted	XP_231162.3	ILMN_1368789	0000450619	S	1655	TTTATCTGTTTGCCAGGGGCCAGGGCTGGGCGGGGAGGGCTTGTTTTACT	3	-	13817196-13817245	3p11	PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 2 (predicted) (Fbxw2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242256-S	ILMN_301063	HR	NM_024364.1	NM_024364.1		60563	13242256	NM_024364.1	Hr	NP_077340.1	ILMN_1370396	0000520463	S	4841	TCCCTGGGTGGCATCAACCTGTGGAGATTACAGAACCCCCTGCCTCTGTC	15	+	50972452-50972501	15p11	Rattus norvegicus hairless homolog (mouse) (Hr), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence ISS]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IDA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence IPI]; Interacting selectively with the enzyme histone deacetylase [goid 42826] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62646921-S	ILMN_291792	HYAL5	NM_001024321.1	NM_001024321.1		500052	66730283	NM_001024321.1	Hyal5	NP_001019492.1	ILMN_1370904	0001170050	S	1798	CTGCCACAGTGAGTCCATGTGTGCCAAGAAAAGATGTCAGTGGGTACCTC	4	+	51346986-51347035	4q22	Rattus norvegicus hyaluronoglucosaminidase 5 (Hyal5), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence IEA]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head [goid 7342] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645074-S	ILMN_63283	ACVR2	XM_342431.2	XM_342431.2		29263	62645074	XM_342431.2	Acvr2	XP_342432.2	ILMN_1353512	0002900563	S	2781	GCGTCTGCAACACGGATATGAAGGGGGTCTAAGGGGAAACTGCGAACTGT				3q12	PREDICTED: Rattus norvegicus activin receptor IIA (Acvr2), mRNA.					
Rattus norvegicus	RefSeq	GI_62662067-S	ILMN_59740	RGD1562426_PREDICTED	XM_224524.4	XM_224524.4		290489	109502016	XM_224524.4	RGD1562426_predicted	XP_224524.4	ILMN_1352077	0006220095	S	821	AGCTACGACTGATGCCACTGTAGAAAATGAGACCGGAGCAGATGAAGTTC	15	-	104092359-104092407:104094672-104094672	15q24	PREDICTED: Rattus norvegicus similar to UDP-glucose:glycoprotein glucosyltransferase 2 (predicted) (RGD1562426_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667077-S	ILMN_65281	LOC367857	XM_346328.2	XM_346328.2		367857	62667077	XM_346328.2	LOC367857	XP_346329.1	ILMN_1348826	0006020593	S	841	TTGTGGGATTTTTAAGGAGGAAACAGACCCAGACTCCTTTCCCGGCCCTC				Xq31	PREDICTED: Rattus norvegicus similar to ubiquitin fusion degradation protein 2 (LOC367857), mRNA.					
Rattus norvegicus	RefSeq	GI_62661864-S	ILMN_65269	LOC290161	XM_224121.2	XM_224121.2		290161	62661864	XM_224121.2	LOC290161	XP_224121.2	ILMN_1360562	0006650524	S	1563	GACGGAAGATTTACAGTTTTCCTCAGGAAAAGGGTGAGTGGCCAGCAGGA				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC290161), mRNA.					
Rattus norvegicus	RefSeq	GI_62638919-S	ILMN_278102	ZFP329_PREDICTED	XM_001062876.1	XM_001062876.1		308361	109460986	XM_001062876.1	Zfp329_predicted	XP_001062876.1	ILMN_1360822	0002120347	S	1597	GTCTTGCCCGACATCAGAGAACACACCTTGAAGAGCAGCCCACGGAAACA				1q21	PREDICTED: Rattus norvegicus zinc finger protein 329 (predicted) (Zfp329_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981269-S	ILMN_64400	NFYC	NM_012866.2	NM_012866.2		25337	62990181	NM_012866.2	Nfyc	NP_036998.1	ILMN_1358630	0006200487	S	1031	CAGACAGAGGTCCAACAAGGACAGCAGCAGTTCAGCCAGTTCACAGACGG	5	-	141351533-141351582	5q36	Rattus norvegicus nuclear transcription factor-Y gamma (Nfyc), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; in Saccharomyces it activates the transcription of genes in response to growth in a nonfermentable carbon source; consists of four known subunits: HAP2, HAP3, HAP4 and HAP5 [goid 16602] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	CBF-C	CBF-C
Rattus norvegicus	RefSeq	GI_62661544-S	ILMN_269938	LOC305913	XM_001060431.1	XM_001060431.1		305913	109502486	XM_001060431.1	LOC305913	XP_001060431.1	ILMN_1359090	0004070193	S	4516	GCAAAGCTCCCTCCGAAAGGTGTGCTCTTACTGCGTTCTTGACCAGATGG				15p12	PREDICTED: Rattus norvegicus similar to zinc finger protein 198 (LOC305913), mRNA.					
Rattus norvegicus	RefSeq	GI_62645625-S	ILMN_67930	LOC311338	XM_230480.3	XM_230480.3		311338	62645625	XM_230480.3	LOC311338	XP_230480.3	ILMN_1348967	0005270204	S	4046	GCAGAAGGTGTGGCTACTGGCAGACAAGGTAGAACTGTGGGATCTGCGGC				3q35	PREDICTED: Rattus norvegicus similar to mKIAA1403 protein (LOC311338), mRNA.					
Rattus norvegicus	RefSeq	GI_62662837	ILMN_275763	LOC683534	XM_001062694.1	XM_001062694.1		683534	109504289	XM_001062694.1	LOC683534	XP_001062694.1	ILMN_1650841	0001580093	S	441	CAGGGGACAAGGATGTGGTGAATGAGGGCCGAAAGAGCTTCCCCAGTGGA					PREDICTED: Rattus norvegicus similar to phosphatidic acid phosphatase type 2 domain containing 1A (LOC683534), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650280-S	ILMN_276642	ZFP36L2	NM_001036626.1	NM_001036626.1		298765	79750233	NM_001036626.1	Zfp36l2	NP_001031703.1	ILMN_1369812	0002970019	S	1333	TGAGCAGCCTCATCACGCCACTTGCCATCCAGACCCACAACTTCGCCGCC	6	-	7533112-7533161	6q12	Rattus norvegicus zinc finger protein 36, C3H type-like 2 (Zfp36l2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps: poly(A) tail shortening, deadenylylation-dependent decapping, and decay of the transcript body, and that can regulate mRNA stability [goid 288] [evidence ISS]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576214-S	ILMN_292337	OLR1331	NM_001000790.1	NM_001000790.1		405074	47576214	NM_001000790.1	Olr1331	NP_001000790.1	ILMN_1369084	0004480402	S	572	CCCTAGCACAGACCGTGAGTTTTACTAATGTTGGTGTTGTTGCACTCACA	8	-	42894040-42894089	8q22	Rattus norvegicus olfactory receptor 1331 (Olr1331), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1331	Olr1331
Rattus norvegicus	RefSeq	GI_62663234-S	ILMN_301811	FAF2	NM_001017445.1	NM_001017445.1		291000	62945245	NM_001017445.1	Faf2	NP_001017445.1	ILMN_1372549	0004560739	S	1766	CTACTTCCAGAGGAAGAGGGGAGAGAAGGATGGACTGACTGCCCACAGTT	17	-	16011637-16011686	17p14	Rattus norvegicus Fas associated factor family member 2 (Faf2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108962; RGD1306577; 2210404d11rik	MGC108962; RGD1306577; 2210404d11rik
Rattus norvegicus	RefSeq	GI_62650901-S	ILMN_60079	LOC500677	XM_576054.1	XM_576054.1		500677	62650901	XM_576054.1	LOC500677	XP_576054.1	ILMN_1355660	0002260088	S	116	CTGGAGAGTTAATGTCAAAGGAAAAGACAGGGCCCAGGAGCGGCAGGACC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500677), mRNA.					
Rattus norvegicus	RefSeq	GI_62646563-S	ILMN_68974	MYT1_PREDICTED	XM_342605.3	XM_342605.3		362291	109469354	XM_342605.3	Myt1_predicted	XP_342606.2	ILMN_1366434	0002810671	S	5086	GGAGGTTCTTATGGATGATTCATGTTGCTGTGAGGGAGTGCTGGCCATGG	3	+	170985384-170985433	3q43	PREDICTED: Rattus norvegicus myelin transcription factor 1 (predicted) (Myt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51491818-S	ILMN_283011	YES1	NM_033298.1	NM_033298.1		24884	51491818	NM_033298.1	Yes1	NP_150640.1	ILMN_1373118	0002370138	S	1511	GCAAAATTTCCAATCAAGTGGACAGCTCCTGAGGCTGCGCTTTATGGTCG	9	+	112564021-112564070	9q38	Rattus norvegicus Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 (Yes1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]	The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	c-Yes; MGC94936; Yes; p60c-yes	c-Yes; MGC94936; Yes; p60c-yes
Rattus norvegicus	RefSeq	GI_62661956-S	ILMN_48044	LOC502012	XM_577440.1	XM_577440.1		502012	62661956	XM_577440.1	LOC502012	XP_577440.1	ILMN_1352030	0002480114	S	429	GAGAGGAAGGAAGAAACGACGTTCATTGGGCCCTCCCGCACAGATGCAGC					PREDICTED: Rattus norvegicus similar to PHD finger protein 11 (LOC502012), mRNA.					
Rattus norvegicus	RefSeq	GI_62643231-S	ILMN_60600	LOC499578	XM_574903.1	XM_574903.1		499578	62643231	XM_574903.1	LOC499578	XP_574903.1	ILMN_1352263	0004570242	S	18	GGCACGATCCTGACACTTGACAAGGACTGGCAGCAGCGAGCAGACACTTG					PREDICTED: Rattus norvegicus similar to ribosomal protein L13 (LOC499578), mRNA.					
Rattus norvegicus	RefSeq	GI_62639633-S	ILMN_269658	KLK5	XM_001080498.1	XM_001080498.1		408211	109461850	XM_001080498.1	Klk5	XP_001080498.1	ILMN_1363819	0006900286	S	78	TAGAGGCTGCAAGGGTGAGAGACATTCCCAACCCTGGCAGGTGGCTATGT				1q22	PREDICTED: Rattus norvegicus kallikrein 5 (Klk5), mRNA.					
Rattus norvegicus	RefSeq	GI_62644317-S	ILMN_267961	RGD1311435	XM_001076285.1	XM_001076285.1		362037	109467608	XM_001076285.1	RGD1311435	XP_001076285.1	ILMN_1354961	0003190537	S	2261	CTCAGCAGCGATGGTGCATGCTTTCAGCAGTACAGGGCGGTCAGGTAGAA				2q42	PREDICTED: Rattus norvegicus similar to hypothetical protein PRO0971 (RGD1311435), mRNA.	Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62718772-S	ILMN_60980	LOC503414	XM_578953.1	XM_578953.1		503414	62718772	XM_578953.1	LOC503414	XP_578953.1	ILMN_1366863	0001780711	S	295	AAGTAAGCACTGCCTACACGTGTCGGGACAACTGGAGGGGGGTGGTCCTA					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC503414), mRNA.					
Rattus norvegicus	RefSeq	GI_62644064	ILMN_265024	UGT8	NM_019276.2	NM_019276.2		50555	19923683	NM_019276.2	Ugt8	NP_062149.1	ILMN_1650105	0003170315	S	3229	GATCAGGCAATGAATGGTGGGGCAGCAGAGCATAGAGTGTATGAACGAGC	2	-	222978168-222978217	2q42	Rattus norvegicus UDP galactosyltransferase 8 (Ugt8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide [goid 6688] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence TAS]	Catalysis of the reaction: UDP-galactose + 2-(2-hydroxyacyl)sphingosine = UDP + 1-(beta-D-galactosyl)-2-(2-hydroxyacyl)sphingosine [goid 3851] [evidence IEA]; Catalysis of the reaction: UDP-galactose + glucosylceramide = lactosylceramide (galactosyl-beta-1,4-glucosylceramide) + UDP [goid 8489] [evidence IMP]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661602-S	ILMN_51379	KCNRG_PREDICTED	XM_224261.2	XM_224261.2		305947	62661602	XM_224261.2	Kcnrg_predicted	XP_224261.2	ILMN_1357985	0002350398	S	2164	ATAGATTGCGTCAACATTGCGAAAAGAAGAAGGCGGAGCGGTGGCCCCTC				15p12	PREDICTED: Rattus norvegicus potassium channel regulator (predicted) (Kcnrg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656690-S	ILMN_63561	AP1GBP1	XM_573165.2	XM_573165.2		84479	109488710	XM_573165.2	Ap1gbp1	XP_573165.2	ILMN_1365426	0006130524	S	3291	GTTACGGCCTGGGATCAAAAACGCCCAGGAGCTGGCTTGTGGAGTGTGTC	10	+	72328326-72328375	10q26	PREDICTED: Rattus norvegicus AP1 gamma subunit binding protein 1 (Ap1gbp1), mRNA.	A clathrin coat found on a vesicle of the trans-Golgi network [goid 30130] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666961-S	ILMN_58164	RGD1563178_PREDICTED	XM_228582.4	XM_228582.4		302424	109510831	XM_228582.4	RGD1563178_predicted	XP_228582.4	ILMN_1360508	0002320332	S	1276	CTATCAATATGAGCAAGCACACCACCTTCTTTGGGGCCATCAGGCTGGGC	X	+	88390230-88390279	Xq31	PREDICTED: Rattus norvegicus similar to ectodysplasin-A isoform Ta A (predicted) (RGD1563178_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663089-S	ILMN_289520	RGD1310128_PREDICTED	XM_001062474.1	XM_001062474.1		290939	109460661	XM_001062474.1	RGD1310128_predicted	XP_001062474.1	ILMN_1355879	0006590348	S	503	AGACCCCACATCCTTCTGATAACTGGACTGACCCAGTGAGAGCTGTGCCT				17p14	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 13, Wayne State University 50, expressed (predicted) (RGD1310128_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647503-S	ILMN_295134	RGD1564699_PREDICTED	XR_008406.1	XR_008406.1		502788	109473635	XR_008406.1	RGD1564699_predicted		ILMN_1365531	0005420537	S	419	AGAAGGCTTCCATGCTGAAGAGTATGAGAAGGATATCCTGCCAACAGAGC				4q31	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1564699_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658191-S	ILMN_55117	RGD1310348_PREDICTED	XM_341010.3	XM_341010.3		360738	109493561	XM_341010.3	RGD1310348_predicted	XP_341011.2	ILMN_1368785	0006860184	S	1361	TGCTCAATGCTGAGGTGTGGAACCTGGGATCTCTTAGGCCCCTGCTTGCC	11	+	84686448-84686497	11q23	PREDICTED: Rattus norvegicus similar to Ser/Thr-rich protein T10 in DGCR region (predicted) (RGD1310348_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705430-S	ILMN_265616	ALB	NM_134326.1	NM_134326.1		24186	19705430	NM_134326.1	Alb	NP_599153.1	ILMN_2038792	0001410575	S	1464	TGAGAAGACCCCAGTGAGCGAGAAGGTCACCAAGTGCTGTAGTGGGTCCT	14	-	19130043-19130092	14p22	Rattus norvegicus albumin (Alb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19836] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the duration or quality of non-rapid eye movement (NREM) sleep [goid 46010] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IEP]; Any process by which a mitochondrion is maintained in a specific location within a cell and prevented from moving elsewhere [goid 51659] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with a toxin, a poisonous substance that causes damage to biological systems. Toxins are differentiated from simple chemical poisons and vegetable alkaloids by their high molecular weight and antigenicity (they elicit an antibody response) [goid 15643] [evidence ISS]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]	Albza; Alb1	Albza; Alb1
Rattus norvegicus	RefSeq	GI_19705430-S	ILMN_265616	ALB	NM_134326.1	NM_134326.1		24186	19705430	NM_134326.1	Alb	NP_599153.1	ILMN_2038793	0003290390	S	1620	CCCAGACAAGGAGAAGCAGATAAAGAAGCAAACGGCTCTCGCTGAGCTGG	14	-	19128887-19128904:19129905-19129936	14p22	Rattus norvegicus albumin (Alb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19836] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the duration or quality of non-rapid eye movement (NREM) sleep [goid 46010] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IEP]; Any process by which a mitochondrion is maintained in a specific location within a cell and prevented from moving elsewhere [goid 51659] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with a toxin, a poisonous substance that causes damage to biological systems. Toxins are differentiated from simple chemical poisons and vegetable alkaloids by their high molecular weight and antigenicity (they elicit an antibody response) [goid 15643] [evidence ISS]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]	Albza; Alb1	Albza; Alb1
Rattus norvegicus	RefSeq	GI_62648061-S	ILMN_272483	ANUBL1	XM_001059788.1	XM_001059788.1		286998	109472518	XM_001059788.1	Anubl1	XP_001059788.1	ILMN_1357892	0006180100	S	2367	CAGGGAGGAGATACTTGCAGGAGGCAAACCCTGTGGTCAACGCACCAAAA	4	+	152477349-152477398	4q42	PREDICTED: Rattus norvegicus testis-specific gene including a ubiquitin-likely domain (Anubl1), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650109-S	ILMN_63732	RGD1560381_PREDICTED	XM_578507.2	XM_578507.2		502997	109475797	XM_578507.2	RGD1560381_predicted	XP_578507.2	ILMN_1360017	0007100048	S	1401	GCATACTGCTAACCTCACACATTTGACCCTGGAGAAGTACCCTGCCCCTG	5	+	162557586-162557635	5q36	PREDICTED: Rattus norvegicus similar to LOC384077 protein (predicted) (RGD1560381_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641356-S	ILMN_283396	RGD1561123_PREDICTED	XM_001080404.1	XM_001080404.1		499271	109462951	XM_001080404.1	RGD1561123_predicted	XP_001080404.1	ILMN_1372594	0000110541	S	3460	GCCTCTGGAAACGGGAACCCAAACCCCCAGGTTACCCAGCAAGAACTTCC				1q36	PREDICTED: Rattus norvegicus similar to mFLJ00114 protein (predicted) (RGD1561123_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870303-S	ILMN_54811	LOC298383	XM_233355.2	XM_233355.2		298383	34870303	XM_233355.2	LOC298383	XP_233355.2	ILMN_1366670	0004070605	S	238	GCGCCACGGGCTGCAGGAACAACCCCTGCCTTTTCCCAGAGGTCTGTTTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA B130055L09 (LOC298383), mRNA.					
Rattus norvegicus	RefSeq	GI_62665345-S	ILMN_284205	KLHL36	NM_001017511.1	NM_001017511.1		498957	62945377	NM_001017511.1	Klhl36	NP_001017511.1	ILMN_1368212	0001770156	S	1955	ACCCGAGGCGCTCACAATCTCCACGGCAGTCACCTCCAGCAGCTTTTGTA	19	+	50166746-50166795	19q12	Rattus norvegicus kelch-like 36 (Drosophila) (Klhl36), mRNA.					
Rattus norvegicus	RefSeq	GI_8393217-S	ILMN_289354	CTSC	NM_017097.1	NM_017097.1		25423	8393217	NM_017097.1	Ctsc	NP_058793.1	ILMN_1359951	0004280672	S	1329	CAAGAACAGCTGGGGCTCTCAATGGGGTGAGAGTGGCTACTTCCGGATCC	1	+	144660669-144660718	1q32	Rattus norvegicus cathepsin C (Ctsc), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence TAS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence NAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IDA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]	CATC	CATC
Rattus norvegicus	RefSeq	GI_62652410-S	ILMN_67855	LOC500869	XM_576267.1	XM_576267.1		500869	62652410	XM_576267.1	LOC500869	XP_576267.1	ILMN_1367640	0004070131	S	732	CAGGATGAGATCTGCCGACGCTGGGGAGGCAATGTTCCGGGTTCTAAGGC				7q31	PREDICTED: Rattus norvegicus similar to Ribosomal protein (LOC500869), mRNA.					
Rattus norvegicus	RefSeq	GI_57529186-S	ILMN_267691	ES1	NM_017004.1	NM_017004.1		24346	57529186	NM_017004.1	Es1	NP_058700.1	ILMN_1359044	0003610538	S	1693	GGGTCTCTGCCAGCCTCAGTACCAGAGGAGCAAAGATGGGGCTATTCCAC				19p11	Rattus norvegicus esterase 1 (Es1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]		Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IDA]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence ISS]	MGC109055	MGC109055
Rattus norvegicus	RefSeq	GI_62642542-S	ILMN_69406	PDZK8_PREDICTED	XM_217651.4	XM_217651.4		308000	109460306	XM_217651.4	Pdzk8_predicted	XP_217651.2	ILMN_1370380	0000130279	S	3651	CGGCCCATCTGAGTCAGTGTAACCAACAGGCCATTTCAGCTTTCACGTGG	1	-	265828902-265828930:265828931-265828951	1q55	PREDICTED: Rattus norvegicus PDZ domain containing 8 (predicted) (Pdzk8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655862-S	ILMN_296420	GNPTG	XM_001059345.1	XM_001059345.1		287134	109490385	XM_001059345.1	Gnptg	XP_001059345.1	ILMN_1358439	0006420070	S	619	CACCGCAGGGCTATGAGAAGTTGCTGAGGGCACTTTTTGAGGATGCTGGC				10q12	PREDICTED: Rattus norvegicus N-acetylglucosamine-1-phosphotransferase, gamma subunit (Gnptg), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]	The modification of high-mannose N-glycans by UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase and the subsequent removal of the N-acetylglucosamine residues yielding mannose-6-P that occurs in the ER-Golgi apparatus to N-glycans destined for the lysosome [goid 16256] [evidence IDA]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IC ]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lysosomal-enzyme D-mannose = UMP + lysosomal-enzyme N-acetyl-D-glucosaminyl-phospho-D-mannose [goid 3976] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_10863918-S	ILMN_293063	TMSB10	NM_021261.1	NM_021261.1		50665	10863918	NM_021261.1	Tmsb10	NP_067084.1	ILMN_1360851	0006040537	S	15	CTGCGGGAACGCCCGGACTGGGAACGCCACGTCGAGAGGCGTTCGCGGAA	4	-	106286788-106286837	4q33	Rattus norvegicus thymosin, beta 10 (Tmsb10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence TAS]; The selective interaction of actin monomers with specific molecules that inhibit their polymerization by preventing their access to other monomers [goid 42989] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric actin, also known as G-actin [goid 3785] [evidence TAS]	THYb10; Ptmb10	THYb10; Ptmb10
Rattus norvegicus	RefSeq	GI_50657395-S	ILMN_282095	CTSQL2	NM_001002813.1	NM_001002813.1		408201	50657395	NM_001002813.1	Ctsql2	NP_001002813.1	ILMN_1365607	0002640670	S	751	GCAACTAAAGGACCTGTTGCTGCTGGAATTCATGCATCTCATGGCAGCTT	17	+	9423069-9423100:9423834-9423851	17p14	Rattus norvegicus cathepsin Q-like 2 (Ctsql2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659974-S	ILMN_59648	LOC364080	XM_344193.2	XM_344193.2		364080	62659974	XM_344193.2	LOC364080	XP_344194.2	ILMN_1364632	0006290736	S	258	GACTCAGATGACGGCCCTTTGTTACCAAACAAAATGAGGAACTCTGCCCC					PREDICTED: Rattus norvegicus similar to RER1 homolog (LOC364080), mRNA.					
Rattus norvegicus	RefSeq	GI_62643286-S	ILMN_63446	LOC497756	XM_579366.1	XM_579366.1		497756	62643286	XM_579366.1	LOC497756	XP_579366.1	ILMN_1372379	0005050632	S	4345	CTCACGAAAAGAGGTGAGGGGCTACATTTCCGAACCATGTGTATGGAGAC				2q32	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013061 (LOC497756), mRNA.					
Rattus norvegicus	RefSeq	GI_62657167-S	ILMN_70046	LOC498008	XM_573204.1	XM_573204.1		498008	62657167	XM_573204.1	LOC498008	XP_573204.1	ILMN_1372738	0004010048	S	2369	GTGGCTCCAGGCAGCACCTTAGCACATGCACCTTGATGGCTGTTCAAGAG				10q32.1	PREDICTED: Rattus norvegicus similar to cardiac lineage protein 1 (LOC498008), mRNA.					
Rattus norvegicus	RefSeq	GI_12083622-S	ILMN_262808	AKP3	NM_022680.1	NM_022680.1		64621	12083622	NM_022680.1	Akp3	NP_073171.1	ILMN_1352120	0000360162	S	1636	GCACTACTGGCCAAGGCGCTGATGCTACTACTGGGGGCTCCTGCTGATTT	9	+	85927286-85927327	9q35	Rattus norvegicus alkaline phosphatase 3, intestine, not Mn requiring (Akp3), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]	The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4) [goid 6793] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The process by which the anatomical structures of the tail are generated and organized. Morphogenesis pertains to the creation of form. The tail is the hindmost part of some animals [goid 35121] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651659-S	ILMN_52885	ORMDL2_PREDICTED	XM_213832.4	XM_213832.4		288783	109480146	XM_213832.4	Ormdl2_predicted	XP_213832.1	ILMN_1356553	0006980161	S	751	GGGCCTGCCACTCACTCTCCTCTATCTAGCAAGAAGCCATCAATGCTTGG	7	-	2118150-2118199	7q11	PREDICTED: Rattus norvegicus ORM1-like 2 (S. cerevisiae) (predicted) (Ormdl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649929-S	ILMN_54717	RGD1564360_PREDICTED	XM_575941.2	XM_575941.2		500574	109475730	XM_575941.2	RGD1564360_predicted	XP_575941.2	ILMN_1353134	0002850139	S	1124	CCGTCAGCAATGGCCTGTCTCCTCAGGTGATGAGCATTCTCAGCAACCCG	5	-	158557882-158557906:158589275-158589299	5q36	PREDICTED: Rattus norvegicus similar to paired box gene 7 isoform 1 (predicted) (RGD1564360_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850609-S	ILMN_291733	VPS16	NM_001005541.1	NM_001005541.1		296159	53850609	NM_001005541.1	Vps16	NP_001005541.1	ILMN_1361724	0005570341	S	2374	GGTCAAGGCTTTGCTTCTTGTCGGGGATGTGGCTCAGGCTGCAGATGTGG	3	+	118058479-118058502:118058621-118058646	3q36	Rattus norvegicus vacuolar protein sorting 16 homolog (S. cerevisiae) (Vps16), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IDA]	MGC94090	MGC94090
Rattus norvegicus	RefSeq	GI_62667628-S	ILMN_289988	LOC315910	XM_236532.2	XM_236532.2		315910	62667628	XM_236532.2	LOC315910	XP_236532.2	ILMN_1356832	0005360706	S	450	CCAAGACGGAAACGTGTGAGTGTGGTGTCTATGGATTAGCCTCGCCAGTG	X|NW_048066.1	+	64226-64275		PREDICTED: Rattus norvegicus similar to ring finger protein 128 isoform 2 (LOC315910), mRNA.					
Rattus norvegicus	Unigene	Rn.73202	ILMN_160853	RN.73202	Rn.73202		Rn.73202		14961186	BI296600			ILMN_1530175	0006380706	S	450	TTTCTAATCTTGGTTTATTTCTTGGGTGAATGAAAAACGGAAAGACATCT					UI-R-CV2-cgt-b-04-0-UI.s1 UI-R-CV2 Rattus norvegicus cDNA clone UI-R-CV2-cgt-b-04-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62660914-S	ILMN_62082	LOC501932	XM_577358.1	XM_577358.1		501932	62660914	XM_577358.1	LOC501932	XP_577358.1	ILMN_1354468	0002630398	S	202	CCACTCAGCAGCCCGGGAACCTGTCCGTAGACTATTCTGGCACTCAACTC				14q22	PREDICTED: Rattus norvegicus similar to Ab2-162 (LOC501932), mRNA.					
Rattus norvegicus	RefSeq	GI_62662613-S	ILMN_290126	RGD1562881_PREDICTED	XM_001055291.1	XM_001055291.1		364571	109504110	XM_001055291.1	RGD1562881_predicted	XP_001055291.1	ILMN_1369454	0001050504	S	3	GGCAGATGATGTAGACCCACAACAGACCAACAATACCGCAGAGGAGCGCC				16p11	PREDICTED: Rattus norvegicus similar to LSM3 homolog, U6 small nuclear RNA associated (predicted) (RGD1562881_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666746-S	ILMN_273226	IQSEC2_PREDICTED	XR_008556.1	XR_008556.1		317433	109511674	XR_008556.1	Iqsec2_predicted		ILMN_1357627	0006840717	S	4596	GCCAAGCCGGATCAGCACTGTGGTCTGAGGAATGGGATGAGTGTACTGGG					PREDICTED: Rattus norvegicus IQ motif and Sec7 domain 2 (predicted) (Iqsec2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662071-S	ILMN_282391	HS6ST3_PREDICTED	XM_001078574.1	XM_001078574.1		364476	109502951	XM_001078574.1	Hs6st3_predicted	XP_001078574.1	ILMN_1364401	0000540315	S	678	CACCAAACAGCTAGAGCACCAGAGGGACCGACAAAAGAGGCGTGAGGAGC				15q24	PREDICTED: Rattus norvegicus heparan sulfate 6-O-sulfotransferase 3 (predicted) (Hs6st3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651163-S	ILMN_50020	RIN3_PREDICTED	XM_234471.4	XM_234471.4		314397	109478575	XM_234471.4	Rin3_predicted	XP_234471.4	ILMN_1368843	0003840706	S	2711	TCCTCTGTGCAGGACTTCATCTGCGTGTCCTACCTTCAGCCCGAGCAGCA	6	+	126661918-126661929:126664050-126664087	6q32	PREDICTED: Rattus norvegicus Ras and Rab interactor 3 (predicted) (Rin3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652473-S	ILMN_48204	LOC362919	XM_343249.2	XM_343249.2		362919	62652473	XM_343249.2	LOC362919	XP_343250.2	ILMN_1371789	0002060102	S	2627	TCGGTACACGAAACTCCCCCGAAGGGTGGCTGAAGCGCATGTGCCTAACT					PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC31278 (LOC362919), mRNA.					
Rattus norvegicus	Unigene	Rn.19928	ILMN_160506	RN.19928	Rn.19928		Rn.19928		47846863	AB114443			ILMN_1530315	0005860059	S	1865	TTCATAAAAGGAAAACCAGCACAGTTTAGATTTCATAGTTCAGAATTTAG					Rattus norvegicus sgigsf mRNA for spermatogenic immunoglobulin superfamily, complete					
Rattus norvegicus	RefSeq	GI_62647545	ILMN_48864	LOC502809	XM_578308.1	XM_578308.1		502809	62647545	XM_578308.1	LOC502809	XP_578308.1	ILMN_1650973	0002680161	S	228	AGTCCCAGATCGCTTCAGTGGCACCTCCAGAGGAGACATCGTGCTGACTC				4q31	PREDICTED: Rattus norvegicus similar to monoclonal antibody kappa light chain (LOC502809), mRNA.					
Rattus norvegicus	RefSeq	GI_62646450-S	ILMN_283925	BMP7	XM_001053727.1	XM_001053727.1		85272	109471414	XM_001053727.1	Bmp7	XP_001053727.1	ILMN_1359226	0006940242	S	1930	CCAGGGTGGGCGCTTACGTCTGTGCTGAAGGAAAACCAAGCAGAAGTCCC				3q42	PREDICTED: Rattus norvegicus bone morphogenetic protein 7 (Bmp7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence TAS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IMP]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized during embryonic development. Morphogenesis pertains to the creation of form [goid 48596] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50768] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.21436	ILMN_161025	RN.21436	Rn.21436		Rn.21436		33164893	CF109741			ILMN_1530240	0002060161	S	214	TTTGCTGATTGTTTCTCTTCATCTGGTGATTGTTGTCTTCATTCTTTATT					Shultzomica02992 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig2620 5', mRNA					
Rattus norvegicus	RefSeq	GI_62653809-S	ILMN_272832	RGD1563717_PREDICTED	XM_001076145.1	XM_001076145.1		363079	109484862	XM_001076145.1	RGD1563717_predicted	XP_001076145.1	ILMN_1353603	0007100358	S	4544	CTAGGAGGAAAAGGACACTGGGGACGGGAGGGGCACTTTAGAGGACCTGA					PREDICTED: Rattus norvegicus similar to MEGF11 protein (predicted) (RGD1563717_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655739-S	ILMN_68825	LOC302961	XM_220196.3	XM_220196.3		302961	62655739	XM_220196.3	LOC302961	XP_220196.3	ILMN_1374341	0002120112	S	334	CTTGGGCTGGCCAGAGAACCATGTTCAAGGCTATTGGAGACTACGATGGC				10q12	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC302961), mRNA.					
Rattus norvegicus	RefSeq	GI_62661832-S	ILMN_63575	LOC498561	XM_573836.1	XM_573836.1		498561	62661832	XM_573836.1	LOC498561	XP_573836.1	ILMN_1368374	0000840161	S	3063	CAGGGACAGCTACATCAGGCTCCTGTCATCATGCACTCCTTGGCATCAGC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498561), mRNA.					
Rattus norvegicus	RefSeq	GI_62718556-S	ILMN_68119	LOC503365	XM_578904.1	XM_578904.1		503365	62718556	XM_578904.1	LOC503365	XP_578904.1	ILMN_1369902	0000780441	S	1145	TGTCACCAGGGACTATGAGGGTCTGGTCATGATGCGCTTGCGCCAGGCTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC503365), mRNA.					
Rattus norvegicus	RefSeq	GI_31543610-S	ILMN_281107	S100A6	NM_053485.2	NM_053485.2		85247	31543610	NM_053485.2	S100a6	NP_445937.1	ILMN_1350480	0006650537	S	96	CTCTGGCAAGGAGGGTGACAAGCACACCCTGAGCAAGAAGGAGCTGAAGG	2	+	182895708-182895757	2q34	Rattus norvegicus S100 calcium binding protein A6 (S100a6), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence ISS]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56090450-S	ILMN_291572	TMEM109	NM_001007736.1	NM_001007736.1		361732	56090450	NM_001007736.1	Tmem109	NP_001007737.1	ILMN_1371303	0001450121	S	1642	CTAGGAGGGAGCCTGGCACTTACCCCTCTTCACCAGGGCACTTGCTCACT	1	-	213368774-213368823	1q43	Rattus norvegicus transmembrane protein 109 (Tmem109), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding the sarcoplasmic reticulum [goid 33017] [evidence IEA]			MGC93811	MGC93811
Rattus norvegicus	RefSeq	GI_16758723-S	ILMN_286648	EIF4EBP1	NM_053857.1	NM_053857.1		116636	16758723	NM_053857.1	Eif4ebp1	NP_446309.1	ILMN_1353239	0003140184	S	617	GGTAATGACTCTCACCTACACCCTCCCTGCATCAAGCGCCAGCGAGTGGA	16	-	69110686-69110735	16q12.3	Rattus norvegicus eukaryotic translation initiation factor 4E binding protein 1 (Eif4ebp1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IDA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein complex assembly [goid 31333] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of translational initiation [goid 45947] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of translational initiation [goid 45947] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of translational initiation [goid 45947] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation [goid 8190] [evidence ISS]; Interacting selectively with eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation [goid 8190] [evidence IEA]; Interacting selectively with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation [goid 31369] [evidence IPI]	PHAS-I	PHAS-I
Rattus norvegicus	RefSeq	GI_62641118-S	ILMN_70357	ASCL3	XM_344947.3	XM_344947.3		246301	109459224	XM_344947.3	Ascl3	XP_344948.1	ILMN_1368587	0000450735	S	413	GCACCTGCCAGAGGACTACCTGGAGAAACGACTCAGCAAAGTGGAGACCC	1	-	167345642-167345691	1q33	PREDICTED: Rattus norvegicus achaete-scute complex homolog-like 3 (Drosophila) (Ascl3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650375-S	ILMN_56303	LOC366557	XM_578529.1	XM_578529.1		366557	62650375	XM_578529.1	LOC366557	XP_578529.1	ILMN_1350176	0002450167	S	175	GCCAACGGGACAGCCCAGGGCAGGATGTAAGTGGAAAAACAGGAGCTGCT					PREDICTED: Rattus norvegicus similar to suppression of tumorigenicity 13 (LOC366557), mRNA.					
Rattus norvegicus	RefSeq	GI_13592124-S	ILMN_297129	USF2	XM_001079341.1	XM_001079341.1		81817	109461690	XM_001079341.1	Usf2	XP_001079341.1	ILMN_1362904	0003290603	S	1437	GGTATTGAGACAGGGTGCTTATGGGAAGGAGGGAGCTTTGGGGATGGGGG				1q21	PREDICTED: Rattus norvegicus upstream transcription factor 2 (Usf2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involving glucose that activates or increases the rate of transcription from an RNA polymerase II promoter [goid 432] [evidence ISS]; Any process involving glucose that activates or increases the rate of transcription from an RNA polymerase II promoter [goid 432] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process involved in the maintenance of an internal equilibrium of lipid within an organism or cell [goid 55088] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657642-S	ILMN_279331	SON	XM_001069321.1	XM_001069321.1		304092	109493899	XM_001069321.1	Son	XP_001069321.1	ILMN_1369543	0004730019	S	7916	CAAGATCTGTCCCACAGGGCTAATGCCACCATCTCCCCCTTTTTGTAGAG				11q11	PREDICTED: Rattus norvegicus Son cell proliferation protein (Son), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing [goid 50733] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62640995-S	ILMN_64512	SPON1	XM_579693.1	XM_579693.1		64456	62640995	XM_579693.1	Spon1	XP_579693.1	ILMN_1650334	0004860386	S	3691	AAGGCCAGGGGTTCCCACTGACTTCCAAGCCATCAGCAGCACCCTAAACC				1q34	PREDICTED: Rattus norvegicus spondin 1 (Spon1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653142-S	ILMN_266785	CBX5_PREDICTED	XM_001069676.1	XM_001069676.1		300266	109482998	XM_001069676.1	Cbx5_predicted	XP_001069676.1	ILMN_1368648	0006840278	S	993	AGCTCTGTGAAAGTCAGGCATTACATCCTTCACATGCTGTGTGGTTCCCA				7q36	PREDICTED: Rattus norvegicus chromobox homolog 5 (Drosophila HP1a) (predicted) (Cbx5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657806-S	ILMN_49211	PRDM15_PREDICTED	XM_239504.4	XM_239504.4		304054	109493007	XM_239504.4	Prdm15_predicted	XP_239504.4	ILMN_1373002	0006220039	S	3558	CCTCACCACCCTGGTAAACTCCATCACACCCTTGGGGAACCAGCTCAGTG	11	-	37812613-37812662	11q12	PREDICTED: Rattus norvegicus PR domain containing 15 (predicted) (Prdm15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34858208-S	ILMN_264043	RGD1560510_PREDICTED	XR_009204.1	XR_009204.1		295255	109514544	XR_009204.1	RGD1560510_predicted		ILMN_1359237	0004590707	S	1033	TCCCTGGCTTCTATACAGTGTTTTTCCTCAGAGCCTTCACTCAAACACCG				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1560510_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648164-S	ILMN_55453	LOC362437	XM_342758.2	XM_342758.2		362437	62648164	XM_342758.2	LOC362437	XP_342759.2	ILMN_1356669	0006400671	S	1734	GCAGAGGCCCAGGGAGAGCAGGAGGACAGCTTGGAGAAGGTGATCAAAGA				4q42	PREDICTED: Rattus norvegicus similar to intermediate filament-like protein MGC:2625 isoform 2; HOM-TES-103 tumor antigen-like (predicted) (LOC362437), mRNA.					
Rattus norvegicus	RefSeq	GI_54400721-S	ILMN_277443	EFEMP2	XM_001070338.1	XM_001070338.1		293677	109463379	XM_001070338.1	Efemp2	XP_001070338.1	ILMN_1363209	0003170364	S	1272	AGGCAAATCAACAATGTCAGCGCCATGCTGGTCCTTGCCAGACCGGTGAC				1q43	PREDICTED: Rattus norvegicus EGF-containing fibulin-like extracellular matrix protein 2 (Efemp2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27681726-S	ILMN_161753	LOC306659	XM_225101.1	XM_225101.1			27681726	XM_225101.1	LOC306659		ILMN_2040668	0001580703	S	1565	CTTCCAAACGTGCTGGGAGATTTGTTCTTGGTGCCGGTGGGAAGCTGCAG										
Rattus norvegicus	RefSeq	GI_19173783-S	ILMN_289187	BCL2A1D	NM_133416.1	NM_133416.1		170929	19173783	NM_133416.1	Bcl2a1d	NP_596907.1	ILMN_1354419	0006980497	S	520	TGCTCTTTCTCCTCAAGCAACACTACTGACCAGAGAGAACCCTGGCTCCC	8	+	94053598-94053626:94053627-94053647	8q31	Rattus norvegicus B-cell leukemia/lymphoma 2 related protein A1d (Bcl2a1d), mRNA.		A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence NAS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19424261-S	ILMN_290886	GPER	NM_133573.1	NM_133573.1		171104	19424261	NM_133573.1	Gper	NP_598257.1	ILMN_1366896	0002350603	S	1017	TAGCTTCCTGGGAGAGACCTTCAGGGACAAGCTCAGGCTGTATGTGGCGC	12	-	15718827-15718876	12q11	Rattus norvegicus G protein-coupled estrogen receptor 1 (Gper), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	GPR41	GPR41
Rattus norvegicus	RefSeq	GI_62718179-S	ILMN_288509	LOC690413	XM_001074383.1	XM_001074383.1		690413	109513491	XM_001074383.1	LOC690413	XP_001074383.1	ILMN_1361819	0000730546	S	1665	TGCATTTTCCCTCGTTAAACCCACAGAGGTGTTTACAGGCTGCAGAAACC	Un|NW_047883.1	+	1071496-1071545		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC690413), mRNA.					
Rattus norvegicus	RefSeq	GI_62666991-S	ILMN_294138	RGD1565286_PREDICTED	XM_001062271.1	XM_001062271.1		367822	109511895	XM_001062271.1	RGD1565286_predicted	XP_001062271.1	ILMN_1368291	0002360576	S	137	CTTCAGCCTATTGCACTGGCCTGCTGCTGGTCTGCAAACTTAGATTTGGC				Xq22	PREDICTED: Rattus norvegicus similar to ribosomal protein L5 (predicted) (RGD1565286_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666141-S	ILMN_60200	TUBE1_PREDICTED	XM_342151.3	XM_342151.3		361856	109509590	XM_342151.3	Tube1_predicted	XP_342152.3	ILMN_1357559	0001500685	S	1340	GAGGTTCATGCGGCTCTACAAGAAGAAGGCTCACCTCCATCACTACCTGC	20	+	43295608-43295635:43297055-43297076	20q12	PREDICTED: Rattus norvegicus tubulin, epsilon 1 (predicted) (Tube1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717764-S	ILMN_69328	LOC317085	XM_229793.3	XM_229793.3		317085	62717764	XM_229793.3	LOC317085	XP_229793.3	ILMN_1374671	0000840132	S	1157	ACGGCCAGAACCACCATTATCAGGTGGCTTCTCTCCTTTGGCTGCTACAG					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC317085), mRNA.					
Rattus norvegicus	RefSeq	GI_62652840-S	ILMN_66701	LOC300105	XM_235528.3	XM_235528.3		300105	62652840	XM_235528.3	LOC300105	XP_235528.3	ILMN_1364810	0002850093	S	3667	GGGAGAAAACCAGCTCCCACAGGTTGTCCTCTGACCTCCATGTGTATACC				7q34	PREDICTED: Rattus norvegicus similar to KIAA0153 protein (predicted) (LOC300105), mRNA.					
Rattus norvegicus	RefSeq	GI_19923710-S	ILMN_276938	NGB	NM_033359.2	NM_033359.2		85382	19923710	NM_033359.2	Ngb	NP_203523.2	ILMN_1364361	0003940059	S	1216	GGCCAGCCAGAATGGAGAAGCCAGAAGGGCAAGGAAGAAGAGTAACCTCA	6	-	111231476-111231525	6q31	Rattus norvegicus neuroglobin (Ngb), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence ISS]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence ISS]; Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11177889-S	ILMN_56633	EPN2	NM_021852.1	NM_021852.1		60443	11177889	NM_021852.1	Epn2	NP_068624.1	ILMN_1365361	0002650601	S	1676	GAACATGGTAGGCAGTATGGGTATTCCCCCATCAGCAGCTCAGCCAGCGG				10q23	Rattus norvegicus epsin 2 (Epn2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A clathrin coat found on an endocytic vesicle [goid 30128] [evidence IDA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IDA]	Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758673-S	ILMN_299877	CSNK2A1	NM_053824.1	NM_053824.1		116549	16758673	NM_053824.1	Csnk2a1	NP_446276.1	ILMN_1363262	0001090148	S	2024	CCCTCTCCTTAATGCAGCTTGCGCCTGGTTGGGAGGGGTGAGAACACTTC				3q41	Rattus norvegicus casein kinase II, alpha 1 polypeptide (Csnk2a1), mRNA.	Complex that possesses casein kinase activity, found in nearly every subcellular compartment. Protein kinase CK2 complexes are usually tetramers of two alpha and two beta subunits, and can phosphorylate many protein substrates in addition to casein [goid 5956] [evidence TAS]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence NAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IEA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Modulation of the activity of a protein phosphatase enzyme [goid 19888] [evidence IEA]; Modulation of the activity of a protein phosphatase enzyme [goid 19888] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646378-S	ILMN_276988	ELMO2	XM_001072606.1	XM_001072606.1		362271	109471333	XM_001072606.1	Elmo2	XP_001072606.1	ILMN_1357179	0001660377	S	3141	CTGCAGCACTTGAAGCACGCGCACAGCCTCCTTCCTTGGACGCATGTTAA				3q42	PREDICTED: Rattus norvegicus engulfment and cell motility 2, ced-12 homolog (C. elegans) (Elmo2), mRNA.					
Rattus norvegicus	RefSeq	GI_62646050-S	ILMN_293261	ANGPT4_PREDICTED	XM_001061004.1	XM_001061004.1		296269	109471039	XM_001061004.1	Angpt4_predicted	XP_001061004.1	ILMN_1354080	0003850161	S	1471	CAAATGTGCTCAGATGCTGTCTGGAGGGTGGTGGTTTGACGCCTGTGGCC				3q41	PREDICTED: Rattus norvegicus angiopoietin 4 (predicted) (Angpt4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659057-S	ILMN_265732	RGD1564490_PREDICTED	XM_001080440.1	XM_001080440.1		501841	109497510	XM_001080440.1	RGD1564490_predicted	XP_001080440.1	ILMN_1353737	0000510537	S	1240	GGTTTGAGGGGAAAAACGCAGACCCCATCCTCATCTCCTTGAAGCATGGG				12q16	PREDICTED: Rattus norvegicus similar to Coronin, actin binding protein 1C (predicted) (RGD1564490_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664867-S	ILMN_65630	RGD1308684_PREDICTED	XM_341641.3	XM_341641.3		361363	109507694	XM_341641.3	RGD1308684_predicted	XP_341642.3	ILMN_1373174	0003140594	S	1799	CCGCAGGCAGCAGCAAAATGCCCCCCTTTTTGGGAAGATTCGGAGTACCC	19	+	10557966-10558015	19p13	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC92922 (predicted) (RGD1308684_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14861861-S	ILMN_278641	CRYGD	NM_033095.1	NM_033095.1		24278	14861861	NM_033095.1	Crygd	NP_149086.1	ILMN_1369952	0005080603	S	354	GTTCACTGAGGACTGCCCCTCTCTCCAGGACCGATTCCACTTCAATGAGA	9	-	63711281-63711330	9q32	Rattus norvegicus crystallin, gamma D (Crygd), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence IEA]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]	The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IMP]	Cryg4; Len	Cryg4; Len
Rattus norvegicus	RefSeq	GI_62660203-S	ILMN_54119	RGD1310470	XM_223229.4	XM_223229.4		305230	109499526	XM_223229.4	RGD1310470	XP_223229.4	ILMN_1359260	0006100458	S	5733	CCAGCACTTCGTGAAAATGAAGTCCACACTCCTCATCGAGCAGCGGAAGC	14	-	16659355-16659404	14p22	PREDICTED: Rattus norvegicus similar to PDZ domain actin binding protein Shroom (RGD1310470), mRNA.					
Rattus norvegicus	RefSeq	GI_47577938-S	ILMN_285076	OLR1128	NM_001000987.1	NM_001000987.1		405345	47577938	NM_001000987.1	Olr1128	NP_001000987.1	ILMN_1356792	0005360129	S	461	TGAACATGGGGCTTCTTGGTCTCATGGTATTGAGGCTTTCATTCTGCACG	8	+	17054524-17054573	8q13	Rattus norvegicus olfactory receptor 1128 (Olr1128), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1128	Olr1128
Rattus norvegicus	RefSeq	GI_62645198-S	ILMN_69243	RGD1565551_PREDICTED	XM_575147.2	XM_575147.2		499807	109468280	XM_575147.2	RGD1565551_predicted	XP_575147.2	ILMN_1364404	0003170722	S	2079	ACATGTCCTCGTCAGTCCAGATTCACCTGTGCCGTGACCACACGAAAGAA	3	+	53334904-53334940:53334941-53334953	3q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4833418A01 (predicted) (RGD1565551_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650686-S	ILMN_49197	RGD1309624_PREDICTED	XM_216706.4	XM_216706.4		299043	109478170	XM_216706.4	RGD1309624_predicted	XP_216706.1	ILMN_1365988	0002630039	S	777	AGGCGGAGTGCTAAGAAGATGCGGTCTAATCCTGAAGACCTCGCAGAGAG	6	-	74991328-74991377	6q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810011O16 (predicted) (RGD1309624_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645157-S	ILMN_282138	COBLL1_PREDICTED	XM_001056368.1	XM_001056368.1		311088	109470003	XM_001056368.1	Cobll1_predicted	XP_001056368.1	ILMN_1351993	0003290685	S	3563	CCGCAATCCGGTCTGGAGAGGCTGCTGCCAAGTTGAAGAGAGTTACTGTT				3q21	PREDICTED: Rattus norvegicus Cobl-like 1 (predicted) (Cobll1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789270-S	ILMN_282953	RAB13	NM_031092.1	NM_031092.1		81756	29789270	NM_031092.1	Rab13	NP_112354.1	ILMN_1363499	0006520392	S	592	TTGCTCAAGACAGGAGGCCGGAGATCGGGAAACAGCAGCAAGCCCTCAAG	2	+	182464791-182464818:182465253-182465274	2q34	Rattus norvegicus RAB13, member RAS oncogene family (Rab13), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657814-S	ILMN_49619	LOC288178	XM_212694.3	XM_212694.3		288178	62657814	XM_212694.3	LOC288178	XP_212694.3	ILMN_1360951	0001450528	S	587	CCTGGACCAGCTCAACCACATTCTAGCTCTTGACCTGCTGGACCAGATGT					PREDICTED: Rattus norvegicus similar to extracellular signal-related kinase 1c (LOC288178), mRNA.					
Rattus norvegicus	RefSeq	GI_62653649-S	ILMN_63740	RGD1562252_PREDICTED	XM_236223.4	XM_236223.4		315646	109483456	XM_236223.4	RGD1562252_predicted	XP_236223.3	ILMN_1353669	0004570136	S	1798	CAGACTTGTGATAAGGCACTCACCCCACAGCTGGCAGCAGCAATGCAGTC	8	+	54130049-54130098	8q23	PREDICTED: Rattus norvegicus similar to hypothetical gene supported by AK085276 (predicted) (RGD1562252_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656870-S	ILMN_270234	SPOP	XM_001081265.1	XM_001081265.1		287643	109491685	XM_001081265.1	Spop	XP_001081265.1	ILMN_1353917	0006650450	S	2464	GCTTGCCTCTTGGGTCTCAGTTTCTTGCTTGTGAGATTTCGAAGCCCTGG				10q31	PREDICTED: Rattus norvegicus speckle-type POZ protein, transcript variant 2 (Spop), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657937-S	ILMN_273657	FBXO40_PREDICTED	XM_001070422.1	XM_001070422.1		363790	109494440	XM_001070422.1	Fbxo40_predicted	XP_001070422.1	ILMN_1366654	0002760044	S	2157	GTCGTGGAGCATAAGACTGACCCCATTCGTCTGACCAGCATGTGCCAGCC				11q22	PREDICTED: Rattus norvegicus F-box protein 40 (predicted) (Fbxo40_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078548-S	ILMN_270607	WDR70	NM_001013909.1	NM_001013909.1		294783	62078548	NM_001013909.1	Wdr70	NP_001013931.1	ILMN_1353325	0001240494	S	1739	GCCGAGTTGGAACCCACGGGGGCACCCTGTCCTCCTATATTGTTAAGAAC	2	-	57471938-57471987	2q16	Rattus norvegicus WD repeat domain 70 (Wdr70), mRNA.				MGC109151	MGC109151
Rattus norvegicus	RefSeq	GI_34855406-S	ILMN_283411	FBL	NM_001025643.1	NM_001025643.1		292747	71043703	NM_001025643.1	Fbl	NP_001020814.1	ILMN_1371223	0000510647	S	1044	GGTGTGTACAGGCCACCTCCCAAGGCGAAGAACTGAAACTCGACTGTCTG	1	+	83280831-83280841:83280943-83280967:83280968-83280981	1q21	Rattus norvegicus fibrillarin (Fbl), mRNA.	A structure found in the nucleolus, which contains newly synthesized preribosomal RNA (pre-rRNA) and a collection of proteins [goid 1651] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence IEA]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IDA]; The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA [goid 16074] [evidence IEA]; The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA [goid 16074] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC116371	MGC116371
Rattus norvegicus	RefSeq	GI_62644773-S	ILMN_289879	RGD1308635_PREDICTED	XM_001078337.1	XM_001078337.1		296587	109469627	XM_001078337.1	RGD1308635_predicted	XP_001078337.1	ILMN_1357172	0001400025	S	632	GTGAAGATCCCACTCACCCCGGCAAGATGGACCAGAGCTGACCCCGTACA				3p13	PREDICTED: Rattus norvegicus similar to CG12379-PA (predicted) (RGD1308635_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30842795-S	ILMN_266667	MAST1	NM_181089.1	NM_181089.1		353118	30842795	NM_181089.1	MAST1	NP_851603.1	ILMN_1361933	0002940040	S	4590	TTCCCTAATGGTCCCAGGTACGAAGCCCGAAGCAGGGTCGAACTCCCGGT	19	+	24900306-24900355	19q11	Rattus norvegicus microtubule associated serine/threonine kinase 1 (MAST1), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Sast	Sast
Rattus norvegicus	RefSeq	GI_62638495-S	ILMN_52345	LOC292268	XM_214758.3	XM_214758.3		292268	62638495	XM_214758.3	LOC292268	XP_214758.3	ILMN_1355768	0000380347	S	1412	GTCGTCTATGGAACACAGCAAGCACCTCGACCTCGCAACACAGGACACGC				1p11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20627 (predicted) (LOC292268), mRNA.					
Rattus norvegicus	RefSeq	GI_62655139-S	ILMN_68138	LOC363240	XM_347115.2	XM_347115.2		363240	62655139	XM_347115.2	LOC363240	XP_347116.2	ILMN_1356368	0005080458	S	540	AGCAAGGTCATGTGCTCCGTGGTGGGGAATGGCTCTGCACCTTCTGATGG					PREDICTED: Rattus norvegicus hypothetical LOC363240 (LOC363240), mRNA.					
Rattus norvegicus	RefSeq	GI_34854235-S	ILMN_48695	LOC365672	XM_345155.1	XM_345155.1		365672	34854235	XM_345155.1	LOC365672	XP_345156.1	ILMN_1357532	0000380026	S	97	CAGAGTCCAAGTGTCACAGAACAGGGAGAGGGTCATACACCAGCCAGGTC					PREDICTED: Rattus norvegicus similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) (LOC365672), mRNA.					
Rattus norvegicus	RefSeq	GI_62658658-S	ILMN_61813	LOC363887	XM_344086.2	XM_344086.2		363887	62658658	XM_344086.2	LOC363887	XP_344087.2	ILMN_1370071	0006350450	S	1400	CTCCATCTTGGCCTCCAGCACAGACAATGTATACCAGGATGGGGATATGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC363887), mRNA.					
Rattus norvegicus	RefSeq	GI_62663835-S	ILMN_48984	LOC502132	XM_577583.1	XM_577583.1		502132	62663835	XM_577583.1	LOC502132	XP_577583.1	ILMN_1350167	0007100082	S	447	CAGCATCTGGAGGAACCTGTAAGAAAACCGTCCTGTCCCCTTGGGTGCCC					PREDICTED: Rattus norvegicus similar to TCR V gamma 3 (LOC502132), mRNA.					
Rattus norvegicus	RefSeq	GI_20806148-S	ILMN_271575	EGFL7	NM_139104.1	NM_139104.1		245963	20806148	NM_139104.1	Egfl7	NP_620804.1	ILMN_1373183	0007050373	S	1712	GAGGGAGCTCAGACACCGCAGCCCCAGGGATCGATTCACACACCATCTTT	3	+	4769766-4769815	3p13	Rattus norvegicus EGF-like domain 7 (Egfl7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC93163	MGC93163
Rattus norvegicus	RefSeq	GI_62650451	ILMN_60346	LOC500626	XM_580097.1	XM_580097.1		500626	62650451	XM_580097.1	LOC500626	XP_580097.1	ILMN_1650342	0003990739	S	370	GCATCTCCATGTTGGTCGCCGTGTCTTCTGATGGTGAGAATGCCCCTCTG					PREDICTED: Rattus norvegicus LOC500626 (LOC500626), mRNA.					
Rattus norvegicus	RefSeq	GI_62649586-S	ILMN_262500	MYCL1_MAPPED	XM_001054123.1	XM_001054123.1		298506	109477169	XM_001054123.1	Mycl1_mapped	XP_001054123.1	ILMN_1371278	0003170075	S	2768	GCCGTCTTCGGCGGCTCCAGGTGGAATCTAAGTACAGCCCTCAATCTAAG				5q36	PREDICTED: Rattus norvegicus v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) (mapped), transcript variant 2 (Mycl1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62661627-S	ILMN_52736	SOX7_PREDICTED	XM_224283.3	XM_224283.3		290317	109501808	XM_224283.3	Sox7_predicted	XP_224283.1	ILMN_1353561	0006760458	S	1338	GTCAGAACTGCTGTCCCAGAGTCTTCAGTCCAAAGCCAGGATCCAGCGCC	15	+	43212780-43212829	15p12	PREDICTED: Rattus norvegicus SRY-box containing gene 7 (predicted) (Sox7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651310-S	ILMN_57305	IGH-1A_PREDICTED	XM_216800.3	XM_216800.3		299352	62651310	XM_216800.3	Igh-1a_predicted	XP_216800.3	ILMN_1369276	0006110131	S	971	CAGCAAGCTCAATGTGGAAAGGAGCAGGTGGGATAGCAGAGCGCCCTTCG					PREDICTED: Rattus norvegicus immunoglobulin heavy chain 1a (serum IgG2a) (predicted) (Igh-1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660778-S	ILMN_54841	MYO1G	XM_573653.2	XM_573653.2		289785	109499982	XM_573653.2	Myo1g	XP_573653.2	ILMN_1353020	0003130706	S	3076	CGCCTCATTTCCGTAGAGCCCAGGCCAGAGCAGACTGAGCCAGATTTCCA	14	-	87275623-87275672	14q21	PREDICTED: Rattus norvegicus myosin IG (Myo1g), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718046-S	ILMN_301394	ZNRF4	NM_001024878.1	NM_001024878.1		301127	67846047	NM_001024878.1	Znrf4	NP_001020049.1	ILMN_1354318	0000870605	S	865	TTCGTGTCCTCTATGCAAGCAGTCGGTGGCCAGCACGCACGACGGTTCCA	Un|NW_047865.1	+	556855-556904		Rattus norvegicus zinc and ring finger 4 (Znrf4), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577576-S	ILMN_289583	OLR520	NM_001000930.1	NM_001000930.1		405250	47577576	NM_001000930.1	Olr520	NP_001000930.1	ILMN_1364357	0002510632	S	161	ACAACCCTATGTACTGTTTCCTCAGTGCATTGTCTTCTGTAGATGCCTGC	3	-	70020218-70020267	3q24	Rattus norvegicus olfactory receptor 520 (Olr520), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr520	Olr520
Rattus norvegicus	RefSeq	GI_62655918-S	ILMN_277301	RHBDF1	NM_001030034.1	NM_001030034.1		303008	71795630	NM_001030034.1	Rhbdf1	NP_001025205.1	ILMN_1368739	0000050156	S	2122	TGCACGCTGGGATCCTGCACTGTTTGGTGTCCGTCTGCTTCCAGATGACG	10	+	15665761-15665770:15665878-15665917	10q12	Rattus norvegicus rhomboid family 1 (Drosophila) (Rhbdf1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124815	MGC124815
Rattus norvegicus	RefSeq	GI_62644078-S	ILMN_58106	LOC499680	XM_575005.1	XM_575005.1		499680	62644078	XM_575005.1	LOC499680	XP_575005.1	ILMN_1352885	0006550156	S	271	CGGCAAAATGGTCATTGAAGCGAGAGCTCCGTGATAGCTTCGTGTGCGGA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L22 (LOC499680), mRNA.					
Rattus norvegicus	RefSeq	GI_50659076-S	ILMN_268004	ATP6V0E1	NM_053578.3	NM_053578.3		94170	50659076	NM_053578.3	Atp6v0e1	NP_446030.3	ILMN_1354260	0002570037	S	702	AGACTCAGTGGGACAGTCAGGAGTGCCTGCTCGAGAGAAGCTCTACCCCA	10	-	16741590-16741639	10q12	Rattus norvegicus ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 (Atp6v0e1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	Atp6k; Atp6v0e; Dsr-1A; dsr-1	Atp6k; Atp6v0e; Dsr-1A; dsr-1
Rattus norvegicus	RefSeq	GI_62640916-S	ILMN_280521	RGD1561957_PREDICTED	XM_001063550.1	XM_001063550.1		308826	109462439	XM_001063550.1	RGD1561957_predicted	XP_001063550.1	ILMN_1363686	0002850132	S	361	AGCAGGTGAAGGAGAACGATCAGAAGCCAAAGGAAGCCAAAGAGGAGGGC				1q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561957_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666007-S	ILMN_275621	RGD1562458_PREDICTED	XR_007672.1	XR_007672.1		294405	109510157	XR_007672.1	RGD1562458_predicted		ILMN_1365150	0006620131	S	237	GCGATGTTACCCCCCTAACATCAAGTGGGGTAATGCTGGTGCTGAGTATG				20q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1562458_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655614-S	ILMN_277208	RGD1562055_PREDICTED	XM_001077854.1	XM_001077854.1		287029	109489638	XM_001077854.1	RGD1562055_predicted	XP_001077854.1	ILMN_1357299	0004060440	S	350	CACCAAACAAGCTCTACACACTGGCAACTAACGTGCCTGTTACCACAGTC				10q11	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1562055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658255-S	ILMN_289292	RGD1560559_PREDICTED	XM_001058776.1	XM_001058776.1		303817	109494663	XM_001058776.1	RGD1560559_predicted	XP_001058776.1	ILMN_1368084	0002690605	S	669	GGACCTGGCATTTGTAGCCATCTTCTTCTGCTGGCACCTGGCCTTAGGGG				11q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310042E22 (predicted) (RGD1560559_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662416-S	ILMN_274173	RGD1564818_PREDICTED	XM_001070537.1	XM_001070537.1		498605	109503983	XM_001070537.1	RGD1564818_predicted	XP_001070537.1	ILMN_1368418	0002370095	S	1028	AGACTCCCAAAGAGGAAGAAAGATCAGCAACAACCCTCCGGTCAGTGCGC				16p14	PREDICTED: Rattus norvegicus similar to MAPA protein (predicted) (RGD1564818_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576796-S	ILMN_269097	OLR828	NM_001000991.1	NM_001000991.1		405351	47576796	NM_001000991.1	Olr828	NP_001000991.1	ILMN_1359320	0000780739	S	928	GCTCTGTCCAACATTCAATTACACAGATATCAGAGGAGCAACGCACCTTC	4	+	152839115-152839164	4q42	Rattus norvegicus olfactory receptor 828 (Olr828), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr828	Olr828
Rattus norvegicus	RefSeq	GI_21955125-S	ILMN_262857	MAMDC4	NM_145768.1	NM_145768.1		252882	21955125	NM_145768.1	Mamdc4	NP_665711.1	ILMN_1367662	0006660019	S	3578	GAGGTTGGCACTGGCTGCAGAAGCAGCACCTCCCCTGCCAAAGTACAGAT	3	-	3733567-3733616	3p13	Rattus norvegicus MAM domain containing 4 (Mamdc4), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		Aegp	Aegp
Rattus norvegicus	RefSeq	GI_6981297-S	ILMN_50303	NXPH1	NM_012994.2	NM_012994.2		25501	77404424	NM_012994.2	Nxph1	NP_037126.1	ILMN_1368330	0001990204	S	1497	GTCACTGTAGAGACACATGAGCACCCACTCCTGCACATTTCAGCTCACAT	4	+	34338507-34338556	4q21	Rattus norvegicus neurexophilin 1 (Nxph1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]	MGC124635	MGC124635
Rattus norvegicus	RefSeq	GI_62666748-S	ILMN_270122	RGD1560601_PREDICTED	XM_001064297.1	XM_001064297.1		317432	109511644	XM_001064297.1	RGD1560601_predicted	XP_001064297.1	ILMN_1368975	0001340446	S	4837	TTCCCCAACAATGGCAGTCCCAGCACCCAGGAGGACCAGGATGGCTTAGA				Xq21	PREDICTED: Rattus norvegicus similar to Jumonji/ARID domain-containing protein 1C (SmcX protein) (predicted) (RGD1560601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646852-S	ILMN_61692	LOC296884	XM_216096.3	XM_216096.3		296884	62646852	XM_216096.3	LOC296884	XP_216096.3	ILMN_1360597	0006900731	S	1315	GGGCTCTGCTGCTACACACACTCGGTTTAACTAGCTCCAATTAGGCAGAC					PREDICTED: Rattus norvegicus hypothetical LOC296884 (LOC296884), mRNA.					
Rattus norvegicus	RefSeq	GI_62643845-S	ILMN_67926	LOC499665	XM_580001.1	XM_580001.1		499665	62643845	XM_580001.1	LOC499665	XP_580001.1	ILMN_1371448	0000520041	S	346	GAGAGTCTGGAGGAAAGACATATCCCAGGGGTCAAGGAGAGCCCAGCCAG					PREDICTED: Rattus norvegicus LOC499665 (LOC499665), mRNA.					
Rattus norvegicus	RefSeq	GI_62653402	ILMN_270061	RGD1560962_PREDICTED	XM_001076947.1	XM_001076947.1		503190	109484342	XM_001076947.1	RGD1560962_predicted	XP_001076947.1	ILMN_1649834	0001770377	S	1684	TTTTGTTCTGTGGGACTGCTGAGGATGGAACCGACCCGGATGAGGCAGCC					PREDICTED: Rattus norvegicus similar to zinc finger protein 426 (predicted) (RGD1560962_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651140-S	ILMN_49041	TTC7B_PREDICTED	XM_343094.2	XM_343094.2		362768	62651140	XM_343094.2	Ttc7b_predicted	XP_343095.2	ILMN_1362590	0006860286	S	5026	ACAGCATCGACCTGTGCCCGTCCCTGGAGCTTGTGTCTTGGAGCCCAACT				6q32	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 7B (predicted) (Ttc7b_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.107180	ILMN_294640	TTC36	NM_001005546.1	NM_001005546.1		300676	53850619	NM_001005546.1	Ttc36	NP_001005546.1	ILMN_1530358	0003120408	S	234	GAAGAAACAGAGGAGGGAGATGAAGATGGAGTTTTCCCTCAAGCACAGTT	8	-	47757577-47757602:47758493-47758516	8q22	Rattus norvegicus tetratricopeptide repeat domain 36 (Ttc36), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_53850619-S	ILMN_294640	TTC36	NM_001005546.1	NM_001005546.1		300676	53850619	NM_001005546.1	Ttc36	NP_001005546.1	ILMN_1368851	0002690048	S	714	CGGCTCGCTAGATGATGAAGGGGGGACCCTGACCCAACCAGAACCCAATA	8	-	47755159-47755208	8q22	Rattus norvegicus tetratricopeptide repeat domain 36 (Ttc36), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645266-S	ILMN_292949	HOXD1_PREDICTED	XM_001064329.1	XM_001064329.1		288151	109470127	XM_001064329.1	Hoxd1_predicted	XP_001064329.1	ILMN_1365345	0001450100	S	495	CACGTCCACTATGCCACCTCGGCGGTCTTTTCCAGCGGAGGATCATTCCT				3q23	PREDICTED: Rattus norvegicus homeo box D1 (predicted) (Hoxd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758359-S	ILMN_293441	MADD	NM_053585.1	NM_053585.1		94193	16758359	NM_053585.1	Madd	NP_446037.1	ILMN_1373958	0001090446	S	4948	TTCGTAGCAGTGAAGAAGACCTCCGAACCCCACCTCGGCCTGTCTCTAGC	3	-	75498567-75498577:75498578-75498616	3q24	Rattus norvegicus MAP-kinase activating death domain (Madd), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 17112] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865613-A	ILMN_287112	B4GALT4	NM_001012018.1	NM_001012018.1		303923	58865613	NM_001012018.1	B4galt4	NP_001012018.1	ILMN_1376489	0004760632	S	1849	ATGCCTCCTTGTCAGAAACACCTTCCCGTCTATGGCCGCCCGACCCTGAA	11	-	63772320-63772369	11q21	Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 (B4galt4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: UDP-galactose + N-acetyl-D-glucosamine = UDP + N-acetyllactosamine [goid 3945] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658323-S	ILMN_64993	MCOLN1_PREDICTED	XM_213684.4	XM_213684.4		288371	109494960	XM_213684.4	Mcoln1_predicted	XP_213684.3	ILMN_1368008	0002260600	S	1985	CAGATCGAATCGGACACTGGGGAAGGGAGGGCATGGAGGGTGGCTGTTAA	12	-	2640065-2640114	12p12	PREDICTED: Rattus norvegicus mucolipin 1 (predicted) (Mcoln1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577194-S	ILMN_299721	OLR357	NM_001000257.1	NM_001000257.1		293794	47577194	NM_001000257.1	Olr357	NP_001000257.1	ILMN_1352024	0000940332	S	192	CCTCTCCTTTGCAGACTGTGTTTATGCCTCAGCTGTCACTCCCAAGGTAA	1	+	216309778-216309827	1q43	Rattus norvegicus olfactory receptor 357 (Olr357), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-216468017-216468964_ORF; Olr357	ratchr1-216468017-216468964_ORF; Olr357
Rattus norvegicus	RefSeq	GI_62659818-S	ILMN_47946	LOC501871	XM_577288.1	XM_577288.1		501871	62659818	XM_577288.1	LOC501871	XP_577288.1	ILMN_1357545	0003060114	S	359	TGCCGCATTTAGCCTGCTGGTATTGGCTGGCAGCTCTGAGAAGTTTCTGG					PREDICTED: Rattus norvegicus similar to guanine nucleotide binding protein (G protein), gamma 5 subunit (LOC501871), mRNA.					
Rattus norvegicus	RefSeq	GI_62662319-S	ILMN_300879	RGD1564653_PREDICTED	XR_008115.1	XR_008115.1		502054	109503830	XR_008115.1	RGD1564653_predicted		ILMN_1358730	0002060609	S	228	GAGCAGATGAAAATGCTGGTGCCTTTTCTGCAGGAAACGGAGCCCTTGCT				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1564653_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654073-S	ILMN_61978	RGD1561074_PREDICTED	XM_236463.4	XM_236463.4		300884	109483773	XM_236463.4	RGD1561074_predicted	XP_236463.4	ILMN_1359232	0005050670	S	1022	ACTGGGAGCTGGATTTGAAGGACTGTGAGCACTGGGCTGTAGGGGTCTGC	8	+	93892734-93892783	8q31	PREDICTED: Rattus norvegicus similar to tripartite motif-containing 43 (predicted) (RGD1561074_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090551-S	ILMN_284633	GTF2F1	NM_001007711.1	NM_001007711.1		316123	56090551	NM_001007711.1	Gtf2f1	NP_001007712.1	ILMN_1373227	0003840465	S	1351	GAACAGGGGAAGCGGACAAGTGAGACTCCAGCAGCCAAGCGCCTTCGGAT	Un|NW_047865.1	+	61890-61896:62003-62045		Rattus norvegicus general transcription factor IIF, polypeptide 1 (Gtf2f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]	MGC94148	MGC94148
Rattus norvegicus	RefSeq	GI_62661980-S	ILMN_49222	LOC502018	XM_577446.1	XM_577446.1		502018	62661980	XM_577446.1	LOC502018	XP_577446.1	ILMN_1352065	0001170722	S	517	ATGACCAGGAGCAGAGGGCCCATGACCAGGAGCAGAGGGCCCATGACCAT				15p11	PREDICTED: Rattus norvegicus similar to coiled-coil-helix-coiled-coil-helix domain containing 2 (LOC502018), mRNA.					
Rattus norvegicus	RefSeq	GI_47087098-S	ILMN_266094	PHF1	NM_212538.1	NM_212538.1		294287	47087098	NM_212538.1	Phf1	NP_997703.1	ILMN_1358770	0004060091	S	1827	GTCCTTGCTCGAAGAGTGCGGCCTGATGGCTCTGTGCAGTACCTAGTCGA	20	+	5174641-5174690	20p12	Rattus norvegicus PHD finger protein 1 (Phf1), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94975; Tctex3	MGC94975; Tctex3
Rattus norvegicus	RefSeq	GI_62661215-S	ILMN_67178	RGD1566210_PREDICTED	XM_577391.2	XM_577391.2		501963	109501392	XM_577391.2	RGD1566210_predicted	XP_577391.2	ILMN_1371693	0005550528	S	467	ATGGCTGGGATTACGGTGACAACCACAACGAGCATGTGTGCCAGCGGCTA	15	-	17843529-17843578	15p14	PREDICTED: Rattus norvegicus similar to Tex264 protein (predicted) (RGD1566210_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658277-S	ILMN_269294	LOC363846	XM_344055.2	XM_344055.2		363846	62658277	XM_344055.2	LOC363846	XP_344056.2	ILMN_1373924	0001580017	S	605	GAGTAGCCTGCGATGTGGAGGTACAGTTCCAAAAACAGGATGGCTGGGGC	11|NW_047362.1	+	110749-110798		PREDICTED: Rattus norvegicus similar to Vacuolar protein sorting 13B (Cohen syndrome protein 1 homolog) (LOC363846), mRNA.					
Rattus norvegicus	RefSeq	GI_21245109-S	ILMN_263616	FGD4	NM_139263.1	NM_139263.1		246174	21245109	NM_139263.1	Fgd4	NP_640356.1	ILMN_1365078	0006510121	S	4769	GGTCGGTAAGTGAGGACAGCATATAGTTAGCACAAGGTGACTGGGTGAGC				11q23	Rattus norvegicus FYVE, RhoGEF and PH domain containing 4 (Fgd4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence IMP]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence IDA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IMP]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; Formation of a microspike, a thin, stiff projection extended from the surface of a migrating cell [goid 30035] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62667340-S	ILMN_57256	LOC501634	XM_577031.1	XM_577031.1		501634	62667340	XM_577031.1	LOC501634	XP_577031.1	ILMN_1363403	0002680088	S	456	ATAATAGGGGAGGGCCCAGGAGCTGCAGGACTTCTGCGCCTGAGACACCG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501634), mRNA.					
Rattus norvegicus	RefSeq	GI_62658528-S	ILMN_55566	LOC498152	XM_573363.1	XM_573363.1		498152	62658528	XM_573363.1	LOC498152	XP_573363.1	ILMN_1354838	0002450035	S	562	CGTCTGTGGACCAGAAGGTCAGCGTCGAACCAGTCTTCAGCTTGGGACCA					PREDICTED: Rattus norvegicus similar to LRRGT00002 (LOC498152), mRNA.					
Rattus norvegicus	RefSeq	GI_34870473-S	ILMN_54553	LOC360236	XM_346394.1	XM_346394.1		360236	34870473	XM_346394.1	LOC360236	XP_346395.1	ILMN_1362629	0005080725	S	4059	TAGCTTGCTCTTTACACTTCAGATGTCTGATGCTCCAAGGGGTAGTGCCC					PREDICTED: Rattus norvegicus hypothetical LOC360236 (LOC360236), mRNA.					
Rattus norvegicus	RefSeq	GI_15375321-S	ILMN_274146	FCGRT	NM_033351.1	NM_033351.1		29558	15375321	NM_033351.1	Fcgrt	NP_203502.1	ILMN_1350117	0006040364	S	1208	CTCTCAGTGGTGATGACTCTGGCGACCTATTGCCTGGTGGGAACTTGCCC	1	-	95567009-95567058	1q22	Rattus norvegicus Fc fragment of IgG, receptor, transporter, alpha (Fcgrt), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; An immune response mediated through a body fluid [goid 6959] [evidence TAS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Combining with an immunoglobulin of an IgG isotype via the Fc region to initiate a change in cell activity [goid 19770] [evidence TAS]; Interacting selectively with an immunoglobulin of an IgG isotype [goid 19864] [evidence IEA]; Interacting selectively with beta-2-microglobulin [goid 30881] [evidence IPI]	FcRn	FcRn
Rattus norvegicus	RefSeq	GI_62649613-S	ILMN_265528	RGD1563973_PREDICTED	XM_001056614.1	XM_001056614.1		366466	109477206	XM_001056614.1	RGD1563973_predicted	XP_001056614.1	ILMN_1365643	0006770131	S	1310	AAAGCTGTCCCCAAGACGACGCCAACTCGCCTGTATCTGGACTACCTGCC				5q36	PREDICTED: Rattus norvegicus similar to Gene model 50 (predicted) (RGD1563973_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_23463284-S	ILMN_298705	FZD9	NM_153305.1	NM_153305.1		266608	23463284	NM_153305.1	Fzd9	NP_695217.1	ILMN_1368450	0005130280	S	2100	AGCTGTCAAGGTCAGACAAGTGAGACACAGGGGGCTGAGGACTAGGGTGG	12	+	22583609-22583658	12q12	Rattus norvegicus frizzled homolog 9 (Drosophila) (Fzd9), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence IEA]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IDA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4926] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with a member of the Wnt family of signaling molecules to initiate a change in cell activity [goid 42813] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62649136-S	ILMN_270398	LOC686176	XM_001072775.1	XM_001072775.1		686176	109496626	XM_001072775.1	LOC686176	XP_001072775.1	ILMN_1360993	0000050427	S	1807	AGCCTACAGCAGTCGCTCCTCCGGAGTTTCCAGGCCGAGAGACCCGCGTT					PREDICTED: Rattus norvegicus similar to F-box and leucine-rich repeat protein 18 (LOC686176), mRNA.					
Rattus norvegicus	RefSeq	GI_62653685-S	ILMN_65430	TNFAIP8L3_PREDICTED	XM_236246.4	XM_236246.4		315673	109483496	XM_236246.4	Tnfaip8l3_predicted	XP_236246.4	ILMN_1356192	0004210100	S	714	GACGCCCAGAACCCACGGACGCATAAACCATGTCTTCAACCACTTCGCTG	8	-	57510422-57510471	8q24	PREDICTED: Rattus norvegicus tumor necrosis factor, alpha-induced protein 8-like 3 (predicted) (Tnfaip8l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652902-S	ILMN_285904	CRELD2	NM_001037208.1	NM_001037208.1		362978	81295362	NM_001037208.1	Creld2	NP_001032285.1	ILMN_1373530	0006400750	S	1034	GACAGCACAAAGCGAAGTCACAGAGGAAAACCCCACACAGCCACTCTCCC	7	+	127129354-127129367:127130433-127130468	7q34	Rattus norvegicus cysteine-rich with EGF-like domains 2 (Creld2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	RGD1310614; MGC112714	RGD1310614; MGC112714
Rattus norvegicus	RefSeq	GI_62645959-S	ILMN_290477	LOC499900	NM_001024313.1	NM_001024313.1		499900	66730299	NM_001024313.1	LOC499900	NP_001019484.1	ILMN_1359837	0001450600	S	2025	GGCAGACACAGGAAGATGAAATGTGCCCACCGCAAACTGCCCTTCCAGCC	3	+	133013099-133013148	3q41	Rattus norvegicus similar to Zinc finger protein 133 (LOC499900), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9073] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: 5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate [goid 4107] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8392863-S	ILMN_272095	ADORA2B	NM_017161.1	NM_017161.1		29316	8392863	NM_017161.1	Adora2b	NP_058857.1	ILMN_1357083	0005360441	S	1236	GTCACACAAGTCTGGCTCACACGTACATGCAACTAGGAGGCCCTGAGGCT	10	+	48437361-48437410	10q23	Rattus norvegicus adenosine A2B receptor (Adora2b), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence IMP]	Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IMP]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9507114-S	ILMN_295694	SLC1A3	NM_019225.1	NM_019225.1		29483	9507114	NM_019225.1	Slc1a3	NP_062098.1	ILMN_1363342	0000510735	S	3721	CTTACGAAAACTGGTCCTCTAGGGTGATCCTTTAGCCAGCCCATCACAGG	2	-	58270321-58270370	2q16	Rattus norvegicus solute carrier family 1 (glial high affinity glutamate transporter), member 3 (Slc1a3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Extracellular matrix material consisting of polysaccharides and protein [goid 43205] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence TAS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IMP]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IDA]; The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions [goid 21545] [evidence ISS]; The actions or reactions of an organism in response to a sound [goid 31223] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise malate in the cytosol; this compound is then transported into the mitochondria where it is converted to oxaloacetate using NADH, the oxaloacetate reacts with gluamate to form aspartate, and the aspartate then returns to the cytosol to complete the cycle [goid 43490] [evidence IDA]; The process by which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron [goid 48667] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]	Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence TAS]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + H+(out) = glutamate(in) + H+(in) [goid 5314] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + H+(out) = glutamate(in) + H+(in) [goid 5314] [evidence ISS]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence ISS]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]	GluT-1; GLAST; EAAT1	GluT-1; GLAST; EAAT1
Rattus norvegicus	RefSeq	GI_62665754-S	ILMN_64406	PI16_PREDICTED	XM_215351.4	XM_215351.4		294312	109509214	XM_215351.4	Pi16_predicted	XP_215351.4	ILMN_1365571	0004010348	S	1929	GGGAGGCGGGGAGCAGGGAACGAAGAGAGGCAGCTTTGACTCCTGAATAA	20	+	7645159-7645208	20p12	PREDICTED: Rattus norvegicus protease inhibitor 16 (predicted) (Pi16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665752-S	ILMN_64406	PI16_PREDICTED	XM_215351.4	XM_215351.4		294312	109509214	XM_215351.4	Pi16_predicted	XP_215351.4	ILMN_1353780	0004610348	S	1288	CGAGTTGCCTGTTTCCAGTGAGGCTTTGGTCCCAGTTCTTCCAGCTCAGG	20	+	7643991-7644040	20p12	PREDICTED: Rattus norvegicus protease inhibitor 16 (predicted) (Pi16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655990-S	ILMN_65611	ITK_PREDICTED	XM_343880.2	XM_343880.2		363577	62655990	XM_343880.2	Itk_predicted	XP_343881.1	ILMN_1365977	0003130017	S	3860	ATGTGTGGAGGCTTTGATGGGCGTGTGTGCACCGCTTACTCCAGTGTCCC				10q21	PREDICTED: Rattus norvegicus IL2-inducible T-cell kinase (predicted) (Itk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090428-S	ILMN_290577	TMBIM1	NM_001007713.1	NM_001007713.1		316516	56090428	NM_001007713.1	Tmbim1	NP_001007714.1	ILMN_1375110	0002030398	S	1727	GTGGGGACAGGGAAAGTGCCTTGGGTGCCCCTCTGGTTTGAGAAACTGAA	9	-	73615116-73615165	9q33	Rattus norvegicus transmembrane BAX inhibitor motif containing 1 (Tmbim1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94053	MGC94053
Rattus norvegicus	RefSeq	GI_62662196-S	ILMN_55490	CAPN7_PREDICTED	XM_224617.3	XM_224617.3		306260	62662196	XM_224617.3	Capn7_predicted	XP_224617.3	ILMN_1358048	0000840673	S	2702	AGCGCATTACAGTGGGGTCTGGTGCTTGTTGTGGTGTTTGGATTTCAGCC				16p16	PREDICTED: Rattus norvegicus calpain 7 (predicted) (Capn7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647232-S	ILMN_57025	RGD1563352_PREDICTED	XM_575471.2	XM_575471.2		500119	109472032	XM_575471.2	RGD1563352_predicted	XP_575471.1	ILMN_1358503	0000730066	S	226	GTCGTGAAGAAGATGAAGCTACAGAGGACTGTTGCCATCCGCCAGGACTG	4	-	77516360-77516409	4q24	PREDICTED: Rattus norvegicus similar to ribosomal protein S11 (predicted) (RGD1563352_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665351-S	ILMN_279197	RGD1560673_PREDICTED	XM_001078819.1	XM_001078819.1		361423	109508979	XM_001078819.1	RGD1560673_predicted	XP_001078819.1	ILMN_1365728	0006380341	S	1056	GAAGGAGGCTGGAGATGAGGAGGACAGCGAGACTGACTCTGTGGAGGAGA				19q12	PREDICTED: Rattus norvegicus similar to FLJ44299 protein (predicted) (RGD1560673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666046-S	ILMN_55497	LOC499445	XM_574768.1	XM_574768.1		499445	62666046	XM_574768.1	LOC499445	XP_574768.1	ILMN_1367891	0003130563	S	12	GGGCTGCTGTGGACATTTGAGAGCCTGGCAAATCATCTAGGGGGTCTGAA				20q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32239 (LOC499445), mRNA.					
Rattus norvegicus	RefSeq	GI_62643404-S	ILMN_68966	LOC365787	XM_345206.2	XM_345206.2		365787	62643404	XM_345206.2	LOC365787	XP_345207.2	ILMN_1364797	0002190332	S	3322	ATGGAGATAGCTTGGTCAGGAAAATGGAATCACAGAGAGGTGGAGCCCTG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC365787), mRNA.					
Rattus norvegicus	RefSeq	GI_47577868-S	ILMN_281880	OLR1226	NM_001000442.1	NM_001000442.1		300551	47577868	NM_001000442.1	Olr1226	NP_001000442.1	ILMN_1355998	0002450520	S	773	GGCTGCTTGCTTATGTAAAGCCATCTTCTGCTGAGACTGTAGGCCAGGGA	8	+	40432950-40432999	8q22	Rattus norvegicus olfactory receptor 1226 (Olr1226), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-40440944-40441885_ORF; tpcr19	ratchr8-40440944-40441885_ORF; tpcr19
Rattus norvegicus	RefSeq	GI_62667622-S	ILMN_50402	LOC501669	XM_577066.1	XM_577066.1		501669	62667622	XM_577066.1	LOC501669	XP_577066.1	ILMN_1349391	0004010121	S	791	TCCGAACTCAGGATCTGACAAGATGGCCGGCCTGCCTCGAAGGATCATCA					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501669), mRNA.					
Rattus norvegicus	RefSeq	GI_62653681-S	ILMN_65249	SLC35F2_PREDICTED	XM_236243.4	XM_236243.4		300713	109483495	XM_236243.4	Slc35f2_predicted	XP_236243.3	ILMN_1359020	0006900711	S	1240	CTTGTACTGTTCCACCCCAACACGCACAGCAGAGCCAGCAGAAAGCAGCG	8	+	57273047-57273096	8q24	PREDICTED: Rattus norvegicus solute carrier family 35, member F2 (predicted) (Slc35f2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652988-S	ILMN_51164	RGD1562562_PREDICTED	XM_576330.2	XM_576330.2		500921	109481224	XM_576330.2	RGD1562562_predicted	XP_576330.2	ILMN_1355181	0005360725	S	1657	GCGAAGTCGGTGACTTTGACACTGGAGTGCAGAGGAGCACAGTGATTGCC	7	+	133634209-133634258	7q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B930062P21 gene (predicted) (RGD1562562_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664898-S	ILMN_277078	LOC679726	XM_001054210.1	XM_001054210.1		679726	109507786	XM_001054210.1	LOC679726	XP_001054210.1	ILMN_1351549	0002120563	S	615	GCACTTGAGAGACAGCTTGGGGGACCGCCTTTCATTATGTGTGCAAGAGG	19	+	14764769-14764818	19p11	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC679726), mRNA.					
Rattus norvegicus	RefSeq	GI_13242242-S	ILMN_263025	AXIN2	XM_001081593.1	XM_001081593.1		29134	109492122	XM_001081593.1	Axin2	XP_001081593.1	ILMN_1365286	0003120500	S	2093	GACCACTCTGGGCTATAGAAGATGCTGAGTGCTCGAGAGACTGCCATACA				10q32.1	PREDICTED: Rattus norvegicus axin2 (Axin2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The formation of bone in which osteoblasts secrete a collage-proteoglycan matrix that binds calcium salts and becomes calcified. Intramembranous ossification is the way flat bones and the shell of a turtle are formed [goid 1957] [evidence ISS]; The formation of bone in which osteoblasts secrete a collage-proteoglycan matrix that binds calcium salts and becomes calcified. Intramembranous ossification is the way flat bones and the shell of a turtle are formed [goid 1957] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62656799-S	ILMN_69183	VPS53_PREDICTED	XM_213395.4	XM_213395.4		287535	109488548	XM_213395.4	Vps53_predicted	XP_213395.4	ILMN_1364143	0004480600	S	2543	CTAGCACACTGTCCCTGATGGCCCCAACACCAGAGCAGGAATCATCACGC	10	-	63411099-63411148	10q24	PREDICTED: Rattus norvegicus vacuolar protein sorting 53 (yeast) (predicted) (Vps53_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162328-S	ILMN_264603	PIGM	NM_024144.1	NM_024144.1		79112	13162328	NM_024144.1	Pigm	NP_077058.1	ILMN_1365390	0000460739	S	3651	GCTAACCCTGGGATCAAACTTGGGGCATCAGTCGTGGCAGCAGTACCTTC	13	+	88380862-88380909	13q24	Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis, class M (Pigm), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IDA]; The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane [goid 16254] [evidence ISS]	Catalysis of the transfer of a mannosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 30] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	GPI-MT-I	GPI-MT-I
Rattus norvegicus	RefSeq	GI_51948509-S	ILMN_268542	UGT2B36	NM_001004271.1	NM_001004271.1		83808	51948509	NM_001004271.1	Ugt2b36	NP_001004271.1	ILMN_1348787	0005080088	A	1234	GCCCACATGGTGGCCAAAGGAGCAGCTGTGGAAGTAAATTTCAGGACAAT	14	+	22480103-22480152	14p21	Rattus norvegicus UDP glucuronosyltransferase 2 family, polypeptide B36 (Ugt2b36), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]	MGC93327; Ugt2b12	MGC93327; Ugt2b12
Rattus norvegicus	RefSeq	GI_62660261	ILMN_268542	UGT2B36	NM_001004271.1	NM_001004271.1		83808	51948509	NM_001004271.1	Ugt2b36	NP_001004271.1	ILMN_1650758	0004070253	A	1512	CCTGCTCACCTGTGTGGCAGTCACTGTAGTCCTTGCTCTAAAGTGCTTTT	14	+	22493153-22493202	14p21	Rattus norvegicus UDP glucuronosyltransferase 2 family, polypeptide B36 (Ugt2b36), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]	MGC93327; Ugt2b12	MGC93327; Ugt2b12
Rattus norvegicus	RefSeq	GI_62646409-S	ILMN_279746	PARD6B_PREDICTED	XM_001072588.1	XM_001072588.1		362279	109471365	XM_001072588.1	Pard6b_predicted	XP_001072588.1	ILMN_1363172	0002190152	S	1138	GACGACATTATCATTGAAGGCAGTGGTGAGCCGCAGCAGATCCCGAAGGC				3q42	PREDICTED: Rattus norvegicus par-6 (partitioning defective 6) homolog beta (C. elegans) (predicted) (Pard6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718463-S	ILMN_61875	LOC501402	XM_580190.1	XM_580190.1		501402	62718463	XM_580190.1	LOC501402	XP_580190.1	ILMN_1367628	0005860332	S	381	GGAAATGGATGCTTTGTCCCCAGTATCACAGGGGGCTGGGGTATGTGAAC					PREDICTED: Rattus norvegicus LOC501402 (LOC501402), mRNA.					
Rattus norvegicus	RefSeq	GI_62644583-S	ILMN_60330	LOC499732	XM_575067.1	XM_575067.1		499732	62644583	XM_575067.1	LOC499732	XP_575067.1	ILMN_1355726	0001090372	S	2223	CAGGTCTGGTGATGACCGTGCTGCGGATCAGAGTGAAGACACTCCCTAGT				2q45	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933403H06 (LOC499732), mRNA.					
Rattus norvegicus	RefSeq	GI_62649317-S	ILMN_277825	C8A_PREDICTED	XM_001064004.1	XM_001064004.1		298288	109476865	XM_001064004.1	C8a_predicted	XP_001064004.1	ILMN_1367239	0000610541	S	1574	GCCCTGCCTGTGAGAGCATGGTATTGGAAGCGATGGAGGGAGCCAAAGCT				5q34	PREDICTED: Rattus norvegicus complement component 8, alpha polypeptide (predicted) (C8a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651535-S	ILMN_68721	LOC503087	XM_578607.1	XM_578607.1		503087	62651535	XM_578607.1	LOC503087	XP_578607.1	ILMN_1367770	0006590450	S	316	CATCTGAGGACTCTGCAGTTTATTTTTGTGCAAGGCACGGTGTTGTGACT				6q33	PREDICTED: Rattus norvegicus similar to monoclonal antibody heavy chain (LOC503087), mRNA.					
Rattus norvegicus	RefSeq	GI_62717882-S	ILMN_53642	LOC501244	XM_576663.1	XM_576663.1		501244	62717882	XM_576663.1	LOC501244	XP_576663.1	ILMN_1362191	0005220400	S	89	GGAACCCCGAATGCCACTTGGAGAAAGCTCACCGGGGGACGCCCCAATCG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC501244), mRNA.					
Rattus norvegicus	RefSeq	GI_62642673-S	ILMN_55526	LOC365617	XM_577974.1	XM_577974.1		365617	62642673	XM_577974.1	LOC365617	XP_577974.1	ILMN_1371882	0006290180	S	495	GAGAAGATCCCCCCAGAACCGGTGAAGAACAAGCTCAGGGAGGCTACTGA					PREDICTED: Rattus norvegicus similar to Glutathione S-transferase kappa 1 (GST 13-13) (Glutathione S-transferase subunit 13) (GST class-kappa) (GSTK1-1) (rGSTK1) (LOC365617), mRNA.					
Rattus norvegicus	RefSeq	GI_62652824-S	ILMN_270965	NDUFA6_PREDICTED	XM_001077432.1	XM_001077432.1		315167	109482557	XM_001077432.1	Ndufa6_predicted	XP_001077432.1	ILMN_1360488	0003130070	S	265	GTTCATGAAGAATGCCCATGTCACCGACCCCAGAGTGGTTGACCTCCTGG				7q34	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14) (predicted) (Ndufa6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666070	ILMN_275291	RGD1559576_PREDICTED	XM_001058383.1	XM_001058383.1		502421	109510153	XM_001058383.1	RGD1559576_predicted	XP_001058383.1	ILMN_1650999	0003870128	S	1622	AGGACCTGTCTCGGACTTACCCAGCACGGCTCAGGTAGAGCCTTCAGTCA				20q11	PREDICTED: Rattus norvegicus similar to solute carrier family 35, member F1 (predicted) (RGD1559576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666535-S	ILMN_58436	RGD1563226_PREDICTED	XM_228708.4	XM_228708.4		317341	109510439	XM_228708.4	RGD1563226_predicted	XP_228708.3	ILMN_1368114	0002120292	S	1634	ACTGTGGGGGTCTTGGGCCAAACTGTGAGCCTTTACTGTGGTTTTCCCTG	X	-	21893842-21893891	Xq13	PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme UBCi (predicted) (RGD1563226_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577564-S	ILMN_298936	OLR517	NM_001000317.1	NM_001000317.1		295771	47577564	NM_001000317.1	Olr517	NP_001000317.1	ILMN_1369940	0001570519	S	621	CCAGCTTCTGCTCTTCTATTGTGTGGGAGTCATCGAAATTATTACCATCC	3	+	69929754-69929803	3q24	Rattus norvegicus olfactory receptor 517 (Olr517), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr517	Olr517
Rattus norvegicus	RefSeq	GI_62661554-S	ILMN_272710	XPO4_PREDICTED	XM_001063318.1	XM_001063318.1		290280	109502520	XM_001063318.1	Xpo4_predicted	XP_001063318.1	ILMN_1372897	0004560731	S	4738	GGGGCAATAATTATGCGAAAGTGGGTGTTATCCTCATGGCACGGGAGCTG				15p12	PREDICTED: Rattus norvegicus exportin 4 (predicted) (Xpo4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662909-S	ILMN_284814	LOC684785	XM_001071937.1	XM_001071937.1		684785	109504390	XM_001071937.1	LOC684785	XP_001071937.1	ILMN_1360653	0005720204	S	1316	GAGAGTCAGGCACAGGTCGGAGCCCCAGCACCCCAAGGAGAAACCATTTT					PREDICTED: Rattus norvegicus similar to pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2 (LOC684785), mRNA.					
Rattus norvegicus	RefSeq	GI_62666742-S	ILMN_268389	RGD1561065_PREDICTED	XM_001062296.1	XM_001062296.1		317425	109511627	XM_001062296.1	RGD1561065_predicted	XP_001062296.1	ILMN_1354589	0006620673	S	3080	CCACCATGACAATGCCTGCACCAACACTGGCTACTACACCCCAGCCTGTC				Xq21	PREDICTED: Rattus norvegicus similar to mKIAA1111 protein (predicted), transcript variant 3 (RGD1561065_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34860521-S	ILMN_266170	RGD1563188_PREDICTED	XM_001075304.1	XM_001075304.1		300386	109484294	XM_001075304.1	RGD1563188_predicted	XP_001075304.1	ILMN_1372164	0004810592	S	942	GCGCATGTCTGGAGGCAGAAGCCCCAAGTTTGGACAAACAGAAGATCTGC				8q12	PREDICTED: Rattus norvegicus similar to UBF transcription factor, short form - rat (predicted) (RGD1563188_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656590-S	ILMN_57687	RGD1566149_PREDICTED	XM_573150.2	XM_573150.2		497960	109488588	XM_573150.2	RGD1566149_predicted	XP_573150.1	ILMN_1365749	0003290100	S	4254	AATTCCTCCTCCACCAAATGTGCGTGGTTCTGACCGCTGCAGAGGGGCTG	10	-	64480148-64480197	10q25	PREDICTED: Rattus norvegicus similar to CDNA sequence BC017647 (predicted) (RGD1566149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665248-S	ILMN_62357	LOC497727	XM_579313.1	XM_579313.1		497727	62665248	XM_579313.1	LOC497727	XP_579313.1	ILMN_1367530	0006510064	S	5851	CTGGATGCTAACAGAAGCTGAATGGTTCCCTGACGATGCTCTGGCCTCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001009704 (LOC497727), mRNA.					
Rattus norvegicus	RefSeq	GI_62639104-S	ILMN_269990	RGD1562091_PREDICTED	XM_001075614.1	XM_001075614.1		292690	109461360	XM_001075614.1	RGD1562091_predicted	XP_001075614.1	ILMN_1359446	0001940154	S	1754	TCCCTATCAGGAAAGTCAGAGGAAGGAACCAGCCGTGGGGGAACCCAGAC				1q21	PREDICTED: Rattus norvegicus similar to expressed sequence C79127 (predicted) (RGD1562091_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664910-S	ILMN_67789	LOC498918	XM_574208.1	XM_574208.1		498918	62664910	XM_574208.1	LOC498918	XP_574208.1	ILMN_1371522	0001850047	S	1348	GTGCGGACGTTTTGGCTAAAGACCCGAAAATGTTGCGGAGCCAGTCTCAG				19p11	PREDICTED: Rattus norvegicus similar to iroquois homeobox protein 5 IRX-5 (LOC498918), mRNA.					
Rattus norvegicus	RefSeq	GI_62658144-S	ILMN_52900	LOC294941	XM_215538.3	XM_215538.3		294941	62658144	XM_215538.3	LOC294941	XP_215538.3	ILMN_1365564	0005890070	S	1467	CCCAAACCGGGACTGTGCTCTTTCTGGGGCAAGGACTCCAAAATACTACC					PREDICTED: Rattus norvegicus similar to Eif4g1 protein (LOC294941), mRNA.					
Rattus norvegicus	RefSeq	GI_62648847-S	ILMN_66776	LOC500447	XM_575809.1	XM_575809.1		500447	62648847	XM_575809.1	LOC500447	XP_575809.1	ILMN_1373482	0006520279	S	3379	CCACACACTGCTCTTGTTCAGCAGGTTCTCCCAAATACTACTGGTCCCCG					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC41945 (LOC500447), mRNA.					
Rattus norvegicus	RefSeq	GI_62666596-S	ILMN_62268	HDAC6	XM_228753.3	XM_228753.3		84581	62666596	XM_228753.3	Hdac6	XP_228753.3	ILMN_1359156	0000130647	S	3955	CTGCTGTTCACACCTCTTCCTTGAGCTGCTTGGGAATGGCCTTGCCAACA				Xq13	PREDICTED: Rattus norvegicus histone deacetylase 6 (Hdac6), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence IEA]; A protein complex that possesses histone deacetylase activity [goid 118] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]	Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence IEA]; Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence ISS]; The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6476] [evidence IEA]; The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6476] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]	Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the enzyme histone deacetylase [goid 42826] [evidence IEA]; Interacting selectively with the enzyme histone deacetylase [goid 42826] [evidence ISS]; Catalysis of the reaction: N-acetyl(alpha-tubulin) + H2O = alpha-tubulin + acetate [goid 42903] [evidence IEA]; Catalysis of the reaction: N-acetyl(alpha-tubulin) + H2O = alpha-tubulin + acetate [goid 42903] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758181-S	ILMN_288706	RAN	NM_053439.1	NM_053439.1		84509	16758181	NM_053439.1	Ran	NP_445891.1	ILMN_2040754	0004890376	S	748	CAGAAGTCTAGTTTTATAGGCAACTGTCCTGTGATGTCAGCGGTGCAGCG	12	-	28737057-28737106	12q14	Rattus norvegicus RAN, member RAS oncogene family (Ran), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence TAS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence TAS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence TAS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence TAS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655363-S	ILMN_65702	RGD1559565_PREDICTED	XM_576608.2	XM_576608.2		501181	109486327	XM_576608.2	RGD1559565_predicted	XP_576608.2	ILMN_1371509	0002510026	S	1784	GGATAGCTGTCATCCGACCCCATGCAAATCAGGGTGGACCTGTGAAATTC	9	+	86124196-86124245	9q35	PREDICTED: Rattus norvegicus similar to EF hand domain containing 1 (predicted) (RGD1559565_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645251-S	ILMN_49427	LOC499811	XM_580019.1	XM_580019.1		499811	62645251	XM_580019.1	LOC499811	XP_580019.1	ILMN_1352944	0003870332	S	796	GCGCACTGCTCTTCCAGGGTAAGGTGCCAGTCAGTTGGGATTCTTGGAAT					PREDICTED: Rattus norvegicus LOC499811 (LOC499811), mRNA.					
Rattus norvegicus	RefSeq	GI_53850597-S	ILMN_286543	DDX59	NM_001005535.1	NM_001005535.1		289402	53850597	NM_001005535.1	Ddx59	NP_001005535.1	ILMN_1358963	0004010301	S	1793	GCAGCCTGGTCACAGGGGCCAACCTCATGGACATTATTAGGAAACACGAG	13	+	49488449-49488498	13q13	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (Ddx59), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93714	MGC93714
Rattus norvegicus	RefSeq	GI_62667108-S	ILMN_276108	RGD1563846_PREDICTED	XM_001054443.1	XM_001054443.1		317224	109512147	XM_001054443.1	RGD1563846_predicted	XP_001054443.1	ILMN_1368132	0003170070	S	4335	AGGGGAAAAGTGCAAGACAGAGATGAGTGATGATACCTTCGTTCTTACCC				Xq31	PREDICTED: Rattus norvegicus similar to Gene model 784 (predicted), transcript variant 2 (RGD1563846_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557201-S	ILMN_301464	SCGB3A1	NM_001013180.1	NM_001013180.1		338418	61557201	NM_001013180.1	Scgb3a1	NP_001013198.1	ILMN_1363275	0002940364	S	8	CCACCATGAAGCTCACCGCCATCTTTCTAGTGTTCTGTGTGGCTCTGCTC	10	+	35125576-35125580:35125581-35125625	10q22	Rattus norvegicus secretoglobin, family 3A, member 1 (Scgb3a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]			PnSP-2; secretoglobin; Pnsp2; Hin1	PnSP-2; secretoglobin; Pnsp2; Hin1
Rattus norvegicus	RefSeq	GI_62656671-S	ILMN_290095	LOC688900	XM_001068751.1	XM_001068751.1		688900	109488678	XM_001068751.1	LOC688900	XP_001068751.1	ILMN_1357398	0004570717	S	165	GCTGTGGGAGTCTGTCTTGGGCTCTTGTTTTTCTACCTCCAGCCAGCAGG	10	+	71260664-71260713	10q26	PREDICTED: Rattus norvegicus similar to schlafen 1 (LOC688900), mRNA.					
Rattus norvegicus	RefSeq	GI_27229289-S	ILMN_290308	AFM	NM_172320.1	NM_172320.1		282708	27229289	NM_172320.1	Afm	NP_758823.1	ILMN_1361321	0001450725	S	1530	TGAGCACCTGAAAGCCGACACCACCTATGCACTCCCATCAGTCTCTGCAC	14	-	19052250-19052299	14p22	Rattus norvegicus afamin (Afm), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47577500-S	ILMN_303025	OLR681	NM_001000631.1	NM_001000631.1		404824	47577500	NM_001000631.1	Olr681	NP_001000631.1	ILMN_1361268	0001500215	S	646	TCCTATGGTGTCATCCTCTTCTCTCTAAGAGGTCACAGCTCAGAAGGACG	3	-	73451193-73451242	3q24	Rattus norvegicus olfactory receptor 681 (Olr681), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr681	Olr681
Rattus norvegicus	RefSeq	GI_62667260	ILMN_293200	RGD1565132_PREDICTED	XR_008517.1	XR_008517.1		503462	109512326	XR_008517.1	RGD1565132_predicted		ILMN_1650095	0002900333	S	1400	CATCCTGAGAGAAGCTGTTTGTGTGGATTGTTTCCCCACACCCCGCACTG				Xq34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732479N06 (predicted) (RGD1565132_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651896-S	ILMN_285879	RGD1563365_PREDICTED	XM_001079678.1	XM_001079678.1		299700	109481788	XM_001079678.1	RGD1563365_predicted	XP_001079678.1	ILMN_1357693	0005360438	S	1588	TCCTGGTCCTTTACCTCCCTGAGAGCTGAGCAGAGCGAAGTGTTCGAGGG					PREDICTED: Rattus norvegicus similar to DNA segment, Chr 10, Wayne State University 102, expressed (predicted) (RGD1563365_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638738	ILMN_64341	LOC502265	XM_577726.1	XM_577726.1		502265	62638738	XM_577726.1	LOC502265	XP_577726.1	ILMN_1651083	0003710364	S	1224	TGCTAAACCACCACTGCGGCACCTCCCATTTGATTCAGTGATCATCCAAG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502265), mRNA.					
Rattus norvegicus	RefSeq	GI_58865487-A	ILMN_58576	PLTP_PREDICTED	XM_215939.4	XM_215939.4		296371	109469240	XM_215939.4	Pltp_predicted	XP_215939.4	ILMN_1376575	0002470273	S	2189	GCAAAGTGCTCCCGTGGGGCAAGTCCTGCTTTAAAAATGCCCAGGCTTCC	3	-	155871680-155871729	3q42	PREDICTED: Rattus norvegicus phospholipid transfer protein (predicted) (Pltp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646366-S	ILMN_58576	PLTP_PREDICTED	XM_215939.4	XM_215939.4		296371	109469240	XM_215939.4	Pltp_predicted	XP_215939.4	ILMN_1361441	0002340707	S	1655	CCAACCATGCAGGCTTCGTCACTGTTGGGGCTGACCTCCACTTTGCCAAA	3	-	155872214-155872253:155872495-155872504	3q42	PREDICTED: Rattus norvegicus phospholipid transfer protein (predicted) (Pltp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666983-S	ILMN_293054	RGD1562343_PREDICTED	XM_001061758.1	XM_001061758.1		302746	109511884	XM_001061758.1	RGD1562343_predicted	XP_001061758.1	ILMN_1354170	0001770079	S	894	TCCGAGCGCCTTCCAGTCCCGGTATGATGAGGCTTTGAAAGATGAGGAGG				Xq22	PREDICTED: Rattus norvegicus similar to Melanoma-associated antigen B3 (MAGE-B3 antigen) (predicted) (RGD1562343_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654001-S	ILMN_58130	LOC503216	XM_578740.1	XM_578740.1		503216	62654001	XM_578740.1	LOC503216	XP_578740.1	ILMN_1356319	0006040128	S	397	GGTCTCAGTGTCACACCATTGGCAGGCATCTGTCCTTAGGAACTGTCCTC					PREDICTED: Rattus norvegicus similar to APH1B homolog (C.elegans) (LOC503216), mRNA.					
Rattus norvegicus	RefSeq	GI_62653825-S	ILMN_274770	PDCD7_PREDICTED	XM_001076457.1	XM_001076457.1		363082	109484883	XM_001076457.1	Pdcd7_predicted	XP_001076457.1	ILMN_1354952	0002760064	S	1696	TTTGGTGCAGTGGGGGAAGCTACTACTGAGGATGATGGGGCAGTGGCTGC				8q24	PREDICTED: Rattus norvegicus programmed cell death protein 7 (predicted) (Pdcd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650085-S	ILMN_62679	NOL9	XM_233702.4	XM_233702.4		313744	109475880	XM_233702.4	Nol9	XP_233702.4	ILMN_1352367	0000450129	S	2640	AGAGGCTTACTCCGTTGAACCTTGTGGACCTTAGCACCCCAGTGTGGCGG	5	+	169286505-169286554	5q36	PREDICTED: Rattus norvegicus nucleolar protein 9 (Nol9), mRNA.					
Rattus norvegicus	RefSeq	GI_62653063-S	ILMN_55199	LASS5_PREDICTED	XM_345870.3	XM_345870.3		366984	109481278	XM_345870.3	Lass5_predicted	XP_345871.3	ILMN_1358479	0000460390	S	1807	CACTCTGGATAGACACCAGGATCACTGTAGCCACATGCCCCCTTCCTGCC	7	-	138475866-138475915	7q36	PREDICTED: Rattus norvegicus longevity assurance homolog 5 (S. cerevisiae) (predicted) (Lass5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664808-S	ILMN_62804	MMP15_PREDICTED	XM_238034.4	XM_238034.4		291848	109507691	XM_238034.4	Mmp15_predicted	XP_238034.4	ILMN_1364367	0006590195	S	2326	CCAACGGGGGTGCAGAGCCTGAGACAGAGGATGACAGCAAGGAAGAGGAT	19	-	10124052-10124101	19p13	PREDICTED: Rattus norvegicus matrix metallopeptidase 15 (predicted) (Mmp15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666262-S	ILMN_65806	DDO_PREDICTED	XM_215402.3	XM_215402.3		294434	62666262	XM_215402.3	Ddo_predicted	XP_215402.1	ILMN_1365353	0004780450	S	477	AAGTGCGAGACTTCTGCCTACCTCCCCTGGCTGGAGAAAAGGTTGGTTGA					PREDICTED: Rattus norvegicus D-aspartate oxidase (predicted) (Ddo_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649142-S	ILMN_278140	ZDHHC21	NM_001039009.1	NM_001039009.1		298184	84781734	NM_001039009.1	Zdhhc21	NP_001034098.1	ILMN_1359486	0000360487	S	1672	GCTCCCAGGAGACATTTGTGACCAGTCAGGCATATATTCCTGTTTTACCC	5	-	101683911-101683960	5q31	Rattus norvegicus zinc finger, DHHC domain containing 21 (Zdhhc21), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34882526-S	ILMN_273859	LOC689290	XM_001070282.1	XM_001070282.1		689290	109513324	XM_001070282.1	LOC689290	XP_001070282.1	ILMN_1350322	0001170746	S	508	GCCTGGAGAGAATGGAGGAGGCGGTCATGTCAATTCTGCACAACTTAGAG	Un|NW_047878.1	-	273562-273611		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC689290), mRNA.					
Rattus norvegicus	RefSeq	GI_62718227-S	ILMN_273859	LOC689290	XM_001070282.1	XM_001070282.1		689290	109513324	XM_001070282.1	LOC689290	XP_001070282.1	ILMN_1367042	0001400273	S	650	CACATGCAAGAAGAAGTTGGTCCCACTGAAGCAGCGGAGCAAGGAGGGAC	Un|NW_047878.1	-	272789-272838		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC689290), mRNA.					
Rattus norvegicus	RefSeq	GI_62642000-S	ILMN_299192	RGD1559854_PREDICTED	XR_009122.1	XR_009122.1		502381	109463637	XR_009122.1	RGD1559854_predicted		ILMN_2039022	0004590674	S	14	AGGAAAAGTGGCACAAGCGCCACAAGGCCCTGCCACAAGAAGCAGAATTC				1q43	PREDICTED: Rattus norvegicus similar to ribosomal protein S8 (predicted) (RGD1559854_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576472-S	ILMN_283712	OLR1602	NM_001000909.1	NM_001000909.1		405219	47576472	NM_001000909.1	Olr1602	NP_001000909.1	ILMN_1368044	0002630446	S	505	GCTCGACTGCGCTACTGTGGCACACCACATATCAATCACTACTTCTGTGA	13	+	90145964-90146013	13q24	Rattus norvegicus olfactory receptor 1602 (Olr1602), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1602	Olr1602
Rattus norvegicus	RefSeq	GI_62662738-S	ILMN_302928	RGD1563604_PREDICTED	XR_008018.1	XR_008018.1		364598	109504208	XR_008018.1	RGD1563604_predicted		ILMN_1373084	0004780551	S	148	CCCCCAAGGACTCAACAAGTGAGGCAAACCAAGACACAGAGACAGGAACC				16q11	PREDICTED: Rattus norvegicus similar to Bcl-2 inhibitor of transcription (predicted) (RGD1563604_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656541-S	ILMN_55016	SMYD4_PREDICTED	XM_220708.4	XM_220708.4		287525	109488522	XM_220708.4	Smyd4_predicted	XP_220708.4	ILMN_1362869	0003710725	S	2306	GGCAGAAAAGATCCTGTTGGTGCACTGTGGCCCTGAGAGTGATGAGGTCC	10	+	62708940-62708989	10q24	PREDICTED: Rattus norvegicus SET and MYND domain containing 4 (predicted) (Smyd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576710-S	ILMN_296885	OLR1724	NM_001000277.1	NM_001000277.1		294183	47576710	NM_001000277.1	Olr1724	NP_001000277.1	ILMN_1374393	0004120156	S	417	AGTTCTTGCCAGTGGGTCATGGGGAGTAGCTCATTGCGTGTCTTTGTTCT	20	-	1185652-1185701	20p12	Rattus norvegicus olfactory receptor 1724 (Olr1724), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1724	Olr1724
Rattus norvegicus	RefSeq	GI_62667021-S	ILMN_263550	RGD1561708_PREDICTED	XM_001067100.1	XM_001067100.1		367838	109512015	XM_001067100.1	RGD1561708_predicted	XP_001067100.1	ILMN_1350751	0000460037	S	625	GAATGGCAGACAGAACCTCAAGAACCCCCCATACCCGAATCCCTTGCCGC				Xq31	PREDICTED: Rattus norvegicus similar to cDNA sequence AK129302 (predicted) (RGD1561708_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56912220-S	ILMN_280023	TXNIP	NM_001008767.1	NM_001008767.1		117514	56912220	NM_001008767.1	Txnip	NP_001008767.1	ILMN_1359696	0004150131	S	2548	GCACTCCACCCGAGAACTGTGCAGCCAGAAAGTGTGAGCTGATGGAGGTG	2	+	191360560-191360609	2q34	Rattus norvegicus thioredoxin interacting protein (Txnip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IEA]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94673; Vdup1	MGC94673; Vdup1
Rattus norvegicus	RefSeq	GI_62651798-S	ILMN_268481	AKAP8	XM_001074708.1	XM_001074708.1		116633	109481589	XM_001074708.1	Akap8	XP_001074708.1	ILMN_1355272	0004920341	S	3203	CAGGCTCAGAATGATGGGTCTCCCCCGTTTTGAAGTTACAGTGCTGTGTC				7q11	PREDICTED: Rattus norvegicus A kinase (PRKA) anchor protein 8 (Akap8), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence IEA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; The pronucleus originating from the ovum that is being fertilized [goid 1939] [evidence IEA]; The pronucleus originating from the ovum that is being fertilized [goid 1939] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IDA]	The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62659164-S	ILMN_49714	LOC498212	XM_573429.1	XM_573429.1		498212	62659164	XM_573429.1	LOC498212	XP_573429.1	ILMN_1359053	0005390253	S	929	CCTGGTCGTATTTTCAGTAGCCAGTAACCTTGCCTGGTACAGTCTGGGTG				13p13	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC498212), mRNA.					
Rattus norvegicus	RefSeq	GI_62650260-S	ILMN_264117	SOS1	XM_001062567.1	XM_001062567.1		313845	109478929	XM_001062567.1	Sos1	XP_001062567.1	ILMN_1350972	0006620397	S	4130	ATCCTCCCGAGAGCCCTCCCTTGTTACCACCACGAGAACCTGTGAGGACA				6q11	PREDICTED: Rattus norvegicus Son of sevenless homolog 1 (Drosophila) (Sos1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IMP]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 45742] [evidence IEP]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IMP]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62661654-S	ILMN_284969	STMN4	XM_001067575.1	XM_001067575.1		79423	109502629	XM_001067575.1	Stmn4	XP_001067575.1	ILMN_1356252	0001090692	S	1041	GGGGTGGGAGAGGGGACAGAGAGTGTGTGGAAAAGGAGGTGAAGATGAGC				15p12	PREDICTED: Rattus norvegicus stathmin-like 4 (Stmn4), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62663168-S	ILMN_272717	RGD1310671_PREDICTED	XM_001067170.1	XM_001067170.1		306734	109505421	XM_001067170.1	RGD1310671_predicted	XP_001067170.1	ILMN_1372829	0002260008	S	3282	GAGGCAGCTCAGTGGTGGTTTCTGCCAGGTGTGGTGACCTGAGTTTGATC				17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932432N11 gene (predicted) (RGD1310671_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507076-S	ILMN_300546	EXOC6	NM_019277.1	NM_019277.1		50556	9507076	NM_019277.1	Exoc6	NP_062150.1	ILMN_1349112	0006110082	S	2741	CAGAAGCTGATCGAGACAGTGGTGAAACAGCTCAGAGGCTTGGTGACCGG					Rattus norvegicus exocyst complex component 6 (Exoc6), mRNA.	A protein complex peripherally associated with the plasma membrane that determines where secretory vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals [goid 145] [evidence IEA]	The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		Sec15l1; Sec15	Sec15l1; Sec15
Rattus norvegicus	RefSeq	GI_16758909-S	ILMN_297276	PPP2R2A	NM_053999.1	NM_053999.1		117104	16758909	NM_053999.1	Ppp2r2a	NP_446451.1	ILMN_1362217	0004570128	S	1703	GCGGTCCATTGTGGCGTCCCTTTCCAGTGTTTGACAGTGTGCCATTCAAC	15	-	46547025-46547074	15p12	Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (Ppp2r2a), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]; A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence ISS]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]	Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656718-S	ILMN_64908	BRIP1_PREDICTED	XM_340869.3	XM_340869.3		360588	109488699	XM_340869.3	Brip1_predicted	XP_340870.3	ILMN_1356178	0006400541	S	3329	TGCAAACAGAATGAGAAAGACCCTTCCCCGGATGCTGAGCTGTCCCCAGT	10	-	74313531-74313580	10q26	PREDICTED: Rattus norvegicus BRCA1 interacting protein C-terminal helicase 1 (predicted) (Brip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880718-S	ILMN_268229	LOC367840	XM_346321.1	XM_346321.1		367840	34880718	XM_346321.1	LOC367840	XP_346322.1	ILMN_1372356	0006510400	S	5	GGCATGCCAAAGTGAAGGTTTCTCTAGAGGACATCGTGTTTATGAAAAGG	X	-	84851691-84851724:84852831-84852846	Xq31	PREDICTED: Rattus norvegicus similar to isopentenyl-diphosphate delta isomerase 2 (LOC367840), mRNA.		The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]	Catalysis of the isomerization of isopentenyl diphosphate into dimethylallyl diphosphate [goid 4452] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658440-S	ILMN_50290	LOC304280	XM_221896.4	XM_221896.4		304280	109495177	XM_221896.4	LOC304280	XP_221896.3	ILMN_1349591	0006040010	S	2119	GATTGGGGCAAATAGAAGGGTCAAGCTAGTGAGGACTTGGGAGAGCAGCC	12	+	10176363-10176412	12p11	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC304280), mRNA.					
Rattus norvegicus	RefSeq	GI_62666364-A	ILMN_265397	POU5F1	NM_001009178.1	NM_001009178.1		294562	57164004	NM_001009178.1	Pou5f1	NP_001009178.1	ILMN_1376841	0004560537	S	666	CCGGAAGAGAAAGCGGACTAGCATTGAGAACCGTGTGAGGTGGAACCTGG	20|NW_047606.1	-	3200-3249		Rattus norvegicus POU class 5 homeobox 1 (Pou5f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process by which a cell becomes committed to become part of the mesoderm [goid 1710] [evidence ISS]; The process by which a cell becomes committed to become part of the endoderm [goid 1711] [evidence ISS]; The process by which a cell becomes committed to become part of the ectoderm [goid 1712] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; Any process involved in preventing uncommitted germ-line stem cells from differentiating as another cell type [goid 30718] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion-dependent exocytosis [goid 45955] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_11693135-S	ILMN_287596	TDO2	NM_022403.1	NM_022403.1		64206	11693135	NM_022403.1	Tdo2	NP_071798.1	ILMN_1369462	0006100161	S	1140	CCTCTCATCGTACCTGGTTCCCCGACACTGGATACCAAAGATGAATCCGA	2	-	173594517-173594566	2q33	Rattus norvegicus tryptophan 2,3-dioxygenase (Tdo2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid [goid 6568] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IEA]; The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine [goid 4833] [evidence IEA]; Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine [goid 4833] [evidence IDA]; Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine [goid 4833] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tdo; TO	Tdo; TO
Rattus norvegicus	RefSeq	GI_47834332-S	ILMN_287623	OLR1743	NM_001001425.1	NM_001001425.1		294197	47834332	NM_001001425.1	Olr1743	NP_001001425.1	ILMN_1358131	0000430110	S	539	GCGACTTCTCACCTTTGATGATCCTGGCTTGCTCAGATACTGGAGTGGCC	20	-	1445337-1445386	20p12	Rattus norvegicus olfactory receptor 1743 (Olr1743), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or8; ratchr20-1445925-1444984_ORF; Olr1743; MOR121-1	Or8; ratchr20-1445925-1444984_ORF; Olr1743; MOR121-1
Rattus norvegicus	RefSeq	GI_62654985-S	ILMN_266641	KDELC1	XM_001060354.1	XM_001060354.1		316370	109487047	XM_001060354.1	Kdelc1	XP_001060354.1	ILMN_1360910	0001580064	S	2305	CAAGACCAGTTTGAGCTGCGTTAAGTAAGTTGGAAGACAGTAAGACTCTG				9q22	PREDICTED: Rattus norvegicus KDEL (Lys-Asp-Glu-Leu) containing 1 (Kdelc1), mRNA.					
Rattus norvegicus	RefSeq	GI_62652729-S	ILMN_271421	RGD1306591	XM_001076493.1	XM_001076493.1		362959	109482562	XM_001076493.1	RGD1306591	XP_001076493.1	ILMN_1360297	0001940152	S	1117	GCCCTGCGCCATGCCTTCACCTACAAGGTCTACGCTGACAAGAGACTGGA				7q34	PREDICTED: Rattus norvegicus similar to Protein C22orf5 (RGD1306591), mRNA.					
Rattus norvegicus	RefSeq	GI_53850637-S	ILMN_295867	PTBP2	NM_001005555.1	NM_001005555.1		310820	53850637	NM_001005555.1	Ptbp2	NP_001005555.1	ILMN_1363928	0005700292	S	1680	AGGACGGGAGATGAAGATGGCGGGCAGATCCCATTGTTTGGTGTCATCAC	2	-	216188832-216188881	2q41	Rattus norvegicus polypyrimidine tract binding protein 2 (Ptbp2), mRNA.	A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence ISS]; Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence IEA]; Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence IEA]; Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	nPTB; MGC95244; Ptb2	nPTB; MGC95244; Ptb2
Rattus norvegicus	RefSeq	GI_62646984-S	ILMN_264886	RGD1563926_PREDICTED	XM_001065790.1	XM_001065790.1		500071	109473289	XM_001065790.1	RGD1563926_predicted	XP_001065790.1	ILMN_1370595	0005890427	S	1641	CCCAGGGATGGTGCCCTCTACAGGAGGAGTTTTGCCTCACTTTGGGAATC					PREDICTED: Rattus norvegicus RGD1563926 (predicted) (RGD1563926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650984-S	ILMN_279937	LOC678786	XR_007278.1	XR_007278.1		678786	109479575	XR_007278.1	LOC678786		ILMN_1352907	0007040138	S	290	CGGCAGCAGAAGTGGAGGAGACCATAGAGGGTCATGTGTCGGGGGAAGAA					PREDICTED: Rattus norvegicus similar to M phase phosphoprotein 6 (LOC678786), mRNA.					
Rattus norvegicus	RefSeq	GI_51571902-S	ILMN_290790	G4	NM_001003975.2	NM_001003975.2		406868	75832144	NM_001003975.2	G4	NP_001003975.1	ILMN_1360445	0000870093	S	1184	AGCCTCCGGGAACCTGTTGAGGATGAGGAGACCGCTGACTGGGAGAGTGA	20	-	3758085-3758134	20p12	Rattus norvegicus G4 protein (G4), mRNA.				MGC124525	MGC124525
Rattus norvegicus	RefSeq	GI_62648069-S	ILMN_50703	RGD1560120_PREDICTED	XM_575650.2	XM_575650.2		500301	109472500	XM_575650.2	RGD1560120_predicted	XP_575650.1	ILMN_1362241	0003610600	S	939	CCCTTCCATGCAGAAGTCTGAAGCTATGGTGGACAAATCCCTGCTCGTCC	4	-	153167692-153167721:153167722-153167741	4q42	PREDICTED: Rattus norvegicus similar to Aldose reductase (AR) (Aldehyde reductase) (predicted) (RGD1560120_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663634-S	ILMN_278060	RGD1306613_PREDICTED	XM_001053501.1	XM_001053501.1		306994	109505845	XM_001053501.1	RGD1306613_predicted	XP_001053501.1	ILMN_1349517	0001230010	S	523	TCACATCCAGAATGTTGCAGAACACAAGAGCATGCGCATTTGGAAAAGCC				17q12.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1600012F09 (predicted) (RGD1306613_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642980-S	ILMN_48266	RGD1562802_PREDICTED	XM_577986.2	XM_577986.2		502505	109464369	XM_577986.2	RGD1562802_predicted	XP_577986.2	ILMN_1352185	0004480609	S	192	AGCTAACAATGCAAAGGCAATGAGTACACGAGCACAGGCCATCAAGACCC	2	+	39451921-39451970	2q14	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1562802_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662339-S	ILMN_63239	LOC306298	XM_224667.3	XM_224667.3		306298	62662339	XM_224667.3	LOC306298	XP_224667.3	ILMN_1365443	0002850286	S	820	TGCTTCTGCTCAAAAGAACTAGATGGGAGCCCCGGAGAGAGGCATGGATC				16p14	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC306298), mRNA.					
Rattus norvegicus	RefSeq	GI_8392860-S	ILMN_293211	ADORA1	NM_017155.1	NM_017155.1		29290	8392860	NM_017155.1	Adora1	NP_058851.1	ILMN_1367299	0002230441	S	2538	GGACGGCAGGCAGAGGAGGGTGACAGGTTCTGAGTGTGAATATCGACTCC	13	-	47159136-47159185	13q13	Rattus norvegicus adenosine A1 receptor (Adora1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness [goid 30673] [evidence IDA]; A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density [goid 32279] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix [goid 48786] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IDA]; A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence IMP]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of peptide secretion [goid 2793] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IDA]; The process of renal sodium excretion [goid 30147] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the directed movement of a nucleoside into, out of, within or between cells [goid 32244] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein [goid 35307] [evidence IDA]; Any process that modulates the frequency, rate or extent of increases in the diameter of blood vessels [goid 42312] [evidence IDA]; Any process that stops, prevents or reduces the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 42321] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43268] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of vasodilation [goid 45908] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IMP]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids [goid 50995] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence IDA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]	Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IDA]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence TAS]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IEA]; Interacting selectively with a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose [goid 1883] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a complex of G-protein beta/gamma subunits [goid 31683] [evidence IDA]; Interacting selectively with a heterotrimeric G-protein [goid 32795] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_51948427-S	ILMN_277310	NUP35	NM_001004229.1	NM_001004229.1		295692	51948427	NM_001004229.1	Nup35	NP_001004229.1	ILMN_1373131	0001050100	S	1216	CTCTGTGATACAGTGCATGCTTAGTGCCGTGTCCTCGGCGTCTACTGCGG	3	+	63519394-63519443	3q24	Rattus norvegicus nucleoporin 35 (Nup35), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]		MGC93680	MGC93680
Rattus norvegicus	RefSeq	GI_62665259-S	ILMN_278270	RGD1307799	NM_001017454.1	NM_001017454.1		307833	62945263	NM_001017454.1	RGD1307799	NP_001017454.1	ILMN_1353342	0000610278	S	2052	GGCCAAGGCTGCCCTTCCCCAAGAGGTTAGCTGTGGGATTGGAAGATGAG	19	-	39554321-39554370	19q12	Rattus norvegicus similar to RIKEN cDNA 2400003C14 (RGD1307799), mRNA.	A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109331	MGC109331
Rattus norvegicus	RefSeq	GI_57528159-S	ILMN_280388	NUBP1	NM_001009619.1	NM_001009619.1		287042	57528159	NM_001009619.1	Nubp1	NP_001009619.1	ILMN_1370607	0001940717	S	988	AAGTGGGACAGAGCCAAGTGCCACCTCCTAACCACAGCGCCAGCGGGTCA	10	-	5206818-5206867	10q11	Rattus norvegicus nucleotide binding protein 1 (Nubp1), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC108970	MGC108970
Rattus norvegicus	RefSeq	GI_47576110-S	ILMN_263626	OLR1396	NM_001001093.1	NM_001001093.1		405987	47576110	NM_001001093.1	Olr1396	NP_001001093.1	ILMN_1352903	0002360551	S	887	TGAAGGGCGCTCTGTGGAAGGTGCTAGGGAGGAGCACAGGCCAAGAGTAG	10	+	34908615-34908664	10q22	Rattus norvegicus olfactory receptor 1396 (Olr1396), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1396	Olr1396
Rattus norvegicus	RefSeq	GI_62644101-S	ILMN_277304	LOC683383	XM_001063099.1	XM_001063099.1		683383	109467272	XM_001063099.1	LOC683383	XP_001063099.1	ILMN_1352846	0000610601	S	1634	GGCTCTCGACACAGTGGAGACTTATTAGTGACGAGGCTGTGACGAACGGG					PREDICTED: Rattus norvegicus similar to vang, van gogh-like 1, transcript variant 2 (LOC683383), mRNA.					
Rattus norvegicus	RefSeq	GI_34013521-S	ILMN_300253	RHBG	NM_183054.1	NM_183054.1		310625	34013521	NM_183054.1	Rhbg	NP_898877.1	ILMN_1359052	0000360373	S	1563	GACTGCCACCCCATTGACCAGTGTTACCCTATTCCAGTGACACCCAAGCC	2	-	180320841-180320890	2q34	Rattus norvegicus Rh family, B glycoprotein (Rhbg), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals [goid 15696] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62659888-S	ILMN_53860	DISP1_PREDICTED	XM_213964.4	XM_213964.4		289338	109498286	XM_213964.4	Disp1_predicted	XP_213964.4	ILMN_1369055	0002030746	S	4576	AGCAAACCAGACTGACAAGGTAGAGAAGGAAGTGAAGCCCAGCCTGCTGC	13	-	99095926-99095975	13q26	PREDICTED: Rattus norvegicus dispatched homolog 1 (Drosophila) (predicted) (Disp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641454-S	ILMN_64074	LOC308956	XM_219290.3	XM_219290.3		308956	62641454	XM_219290.3	LOC308956	XP_219290.3	ILMN_1354293	0001850114	S	1811	GGGAACCTCGTGTAGGAACGTAGGGTGCCCAGAGAACCGAGCTGTTGTTC				1q35	PREDICTED: Rattus norvegicus similar to NAD(P) dependent steroid dehydrogenase-like (LOC308956), mRNA.					
Rattus norvegicus	RefSeq	GI_62666712-S	ILMN_68412	LOC363459	XM_347141.2	XM_347141.2		363459	62666712	XM_347141.2	LOC363459	XP_347142.2	ILMN_1370160	0006900152	S	922	CCCTGCTTTTGCTGGTGTCCTGCACCTGGAAGTTGTGATGCTAAAGGCTC					PREDICTED: Rattus norvegicus hypothetical LOC363459 (LOC363459), mRNA.					
Rattus norvegicus	RefSeq	GI_47577688-S	ILMN_292500	OLR639	NM_001000340.1	NM_001000340.1		295852	47577688	NM_001000340.1	Olr639	NP_001000340.1	ILMN_1373317	0000940725	S	270	CTCTTATACAAACTGTATGCTACAGGTCTTTGCCATGCACTTTTTTGGCA	3	+	72502528-72502577	3q24	Rattus norvegicus olfactory receptor 639 (Olr639), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr639; ratchr3-72398631-72399572_ORF	Olr639; ratchr3-72398631-72399572_ORF
Rattus norvegicus	RefSeq	GI_62660972-S	ILMN_68067	LOC360997	XM_341272.2	XM_341272.2		360997	62660972	XM_341272.2	LOC360997	XP_341273.2	ILMN_1350371	0002030427	S	1579	CCGCCTCTTTTACCGTTTAACAGAATCATGTAACCACCCAGTCAATGGCC				14p22	PREDICTED: Rattus norvegicus similar to ATP-binding cassette, sub-family G (WHITE), member 3 (LOC360997), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667274-S	ILMN_53518	LOC317409	XM_228824.3	XM_228824.3		317409	62667274	XM_228824.3	LOC317409	XP_228824.1	ILMN_1375174	0006900278	S	1289	CTCGGGATGTATGTAATAGCAACATGGGCTCTTTACAAATGAAGACCGAG				Xq35	PREDICTED: Rattus norvegicus similar to Microsomal signal peptidase 23 kDa subunit (SPase 22 kDa subunit) (SPC22/23) (LOC317409), mRNA.					
Rattus norvegicus	RefSeq	GI_62652894-S	ILMN_69429	RGD1562115_PREDICTED	XM_576324.2	XM_576324.2		500915	109481154	XM_576324.2	RGD1562115_predicted	XP_576324.2	ILMN_1356916	0004210020	S	1549	CACTGCAGCGTGCCCTAGGAGGATGGCTTTGCCCAGAAGGACACCACCGT	7	+	126055530-126055579	7q34	PREDICTED: Rattus norvegicus similar to TAFA5 (predicted) (RGD1562115_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114313-S	ILMN_264114	SPINK5L2	NM_001008875.1	NM_001008875.1		408231	57114313	NM_001008875.1	Spink5l2	NP_001008875.1	ILMN_1361196	0003390603	S	62	TCCTGGCTGCTCCAGGTGCTAGAGTTTGGTGGCCTACACATGGACTGATT	18	+	37638679-37638687:37639335-37639375	18q11	Rattus norvegicus Kazal type serine protease inhibitor 5-like 2 (Spink5l2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577508-S	ILMN_292332	OLR679	NM_001000354.1	NM_001000354.1		295885	47577508	NM_001000354.1	Olr679	NP_001000354.1	ILMN_1365640	0002450484	S	645	CTCCTATGGCGTCATCCTCTTCTCTCTAAGAGGTCACAGCTCAGAAGGAC	3	-	73434527-73434576	3q24	Rattus norvegicus olfactory receptor 679 (Olr679), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-73331593-73330658_ORF; Olr679	ratchr3-73331593-73330658_ORF; Olr679
Rattus norvegicus	RefSeq	GI_6978544-S	ILMN_284520	ATP1A2	NM_012505.1	NM_012505.1		24212	6978544	NM_012505.1	Atp1a2	NP_036637.1	ILMN_1373103	0000060292	S	4670	CAAGGGCCTCCCAAAGGCTACTGTCTCATCGTGGTGGATGGAGTTTTGCC	13	-	88259383-88259432	13q24	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 2 polypeptide (Atp1a2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence IDA]; Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. It does not occur during cholinergic synaptic transmission. Instead, acetylcholine is enzymatically degraded in the synaptic cleft [goid 1504] [evidence ISS]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence ISS]; Any process that modulates the frequency, rate or extent of striated muscle contraction [goid 6942] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; The transport of protons against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport [goid 15988] [evidence TAS]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence IMP]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle contraction [goid 45988] [evidence ISS]; Any process that decreases the concentration of calcium ions in the cytodol [goid 51481] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage [goid 15077] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in) [goid 19829] [evidence IMP]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence TAS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence TAS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	RATATPA2	RATATPA2
Rattus norvegicus	RefSeq	GI_62643939-S	ILMN_49833	LOC502537	XM_578025.1	XM_578025.1		502537	62643939	XM_578025.1	LOC502537	XP_578025.1	ILMN_1362305	0006660594	S	315	GGTGCTGACAGCTTAACAAGCCTTAGAAAGTTAGCCGAACAGTTCCCACG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502537), mRNA.					
Rattus norvegicus	RefSeq	GI_62645440-S	ILMN_272477	LRRC4C_PREDICTED	XM_001079006.1	XM_001079006.1		311236	109470368	XM_001079006.1	Lrrc4c_predicted	XP_001079006.1	ILMN_1350970	0006900504	S	3677	ATGATGAGATCACTGGGGACACGCCCATGGAAAGCCACCTGCCCATGCCT				3q31	PREDICTED: Rattus norvegicus leucine rich repeat containing 4C (predicted) (Lrrc4c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657697-S	ILMN_63313	LOC501755	XM_577155.1	XM_577155.1		501755	62657697	XM_577155.1	LOC501755	XP_577155.1	ILMN_1354881	0002970347	S	1184	GGACATTGAACTGCCTGAGAATCCAGCTATAACTCTCTTGGGGATATACC					PREDICTED: Rattus norvegicus similar to LRRG00132 (LOC501755), mRNA.					
Rattus norvegicus	RefSeq	GI_27689262-S	ILMN_270527	RGD1563281_PREDICTED	XM_220923.1	XM_220923.1		287668	27689262	XM_220923.1	RGD1563281_predicted	XP_220923.1	ILMN_1358129	0000870364	S	605	TGGCCCTGTTAGTCACCATGGGGGGCTGGCTGACACTGGTAGTGGCTTAT	10	+	87422738-87422787	10q31	PREDICTED: Rattus norvegicus similar to leucine-rich repeat domain-containing protein (predicted) (RGD1563281_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850605-S	ILMN_298475	IK	NM_001005537.1	NM_001005537.1		291659	53850605	NM_001005537.1	Ik	NP_001005537.1	ILMN_1371587	0001660156	S	1730	TGCGATCATCGAGAAGAGGAAGAAGATGGAAGCTGACGGGGTTGAAGTGA	18	+	29458095-29458098:29458461-29458495:29458582-29458592	18p11	Rattus norvegicus IK cytokine (Ik), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]			MGC93710; CSA2; RED	MGC93710; CSA2; RED
Rattus norvegicus	RefSeq	GI_11560049-S	ILMN_287665	PDCL	NM_022247.1	NM_022247.1		64013	11560049	NM_022247.1	Pdcl	NP_071583.1	ILMN_1358477	0003610408	S	1709	GCTGTCATGATGTTGGGAAGCAGGCATCCTATTGACTGACACTGGTGTGT	3	-	17107969-17108018	3q11	Rattus norvegicus phosducin-like (Pdcl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IDA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Inhibits signal transduction the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form [goid 16299] [evidence IDA]	Phlp	Phlp
Rattus norvegicus	RefSeq	GI_62639243-S	ILMN_263505	PAF1	NM_001024898.1	NM_001024898.1		361531	67846071	NM_001024898.1	Paf1	NP_001020069.1	ILMN_1367164	0004050408	S	1694	AGCAGGAGTCGTAGCCGGAGTGCCAGCCCCTTCCCCAGTGGTAGTGAACA	1	+	83506538-83506587	1q21	Rattus norvegicus Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (Paf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		RGD1306219; MGC114568	RGD1306219; MGC114568
Rattus norvegicus	RefSeq	GI_25282434-S	ILMN_59134	TXNDC9	NM_172032.1	NM_172032.1		280671	25282434	NM_172032.1	Txndc9	NP_742029.2	ILMN_1355732	0002230017	S	615	GCCGAATGTGGAAAAGGCACCATTCCTCTGTGAGAGACTGCGGATCAAAG				9q21	Rattus norvegicus thioredoxin domain containing 9 (Txndc9), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108568	MGC108568
Rattus norvegicus	RefSeq	GI_8393780-A	ILMN_277171	MRLCB	NM_017343.1	NM_017343.1		50685	8393780	NM_017343.1	Mrlcb	NP_059039.1	ILMN_1376509	0001450162	S	987	CAACCAATGTGAAAGCCCAGGAAAATATATCGGCATTTCTGGTTTTGCTG	9	-	110171498-110171547	9q38	Rattus norvegicus myosin light chain, regulatory B (Mrlcb), mRNA.				MGC114341	MGC114341
Rattus norvegicus	RefSeq	GI_62667174-S	ILMN_292725	SRPX2_PREDICTED	XM_001067991.1	XM_001067991.1		317181	109512320	XM_001067991.1	Srpx2_predicted	XP_001067991.1	ILMN_1362075	0002370750	S	1722	CATTGGGAGCAGCCCTCGGGTGGGGGAGAGGTTTGCCAATTCTAGGACAT				Xq34	PREDICTED: Rattus norvegicus sushi-repeat-containing protein, X-linked 2 (predicted) (Srpx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58332281-S	ILMN_263352	AIP	NM_172327.2	NM_172327.2		282827	58332281	NM_172327.2	Aip	NP_758830.2	ILMN_1367524	0006400040	S	1502	TGAAAGTGAAGGGGCTCCAGTTGCCCTACTCTATGACCCTGAGCAGGTCC	1	-	206697521-206697570	1q42	Rattus norvegicus aryl-hydrocarbon receptor-interacting protein (Aip), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence ISS]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that results in the attainment of the full functional capacity of a protein [goid 22417] [evidence ISS]; The directed movement of a protein from the cytoplasm to the mitochondrion [goid 43681] [evidence ISS]	The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]	XAP2	XAP2
Rattus norvegicus	RefSeq	GI_16758711-S	ILMN_297456	PDIA4	NM_053849.1	NM_053849.1		116598	16758711	NM_053849.1	Pdia4	NP_446301.1	ILMN_1357690	0000770129	S	2038	ACTGCCAATGACATCACCAACGACCGATACAAGGTGGAGGGCTTCCCCAC	4	-	75929639-75929688	4q24	Rattus norvegicus protein disulfide isomerase family A, member 4 (Pdia4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IDA]; Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	Erp72; Erp70	Erp72; Erp70
Rattus norvegicus	RefSeq	GI_62649821-S	ILMN_49272	ZNF593_PREDICTED	XM_216542.3	XM_216542.3		298546	109475629	XM_216542.3	Znf593_predicted	XP_216542.1	ILMN_1351082	0000940739	S	885	GCAGACATGCCCTCTTCTGGGTGTTCTGCCCAAAATAAAGGACCTGGACG	5	-	152989077-152989126	5q36	PREDICTED: Rattus norvegicus zinc finger protein 593 (predicted) (Znf593_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646554-S	ILMN_68529	RGD1563203_PREDICTED	XM_575305.2	XM_575305.2		499957	109469372	XM_575305.2	RGD1563203_predicted	XP_575305.1	ILMN_1367789	0002060324	S	1344	GTAGCTGCCTGGAACTAGAGTGGGGTTTGAATGTCCCCAGACTCCCAGGG	3	-	170734826-170734875	3q43	PREDICTED: Rattus norvegicus similar to Sterile alpha motif domain containing 10 (predicted) (RGD1563203_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18426849-S	ILMN_53609	LCP2	NM_130421.2	NM_130421.2		155918	71896578	NM_130421.2	Lcp2	NP_569105.1	ILMN_1365475	0003800092	S	1327	CTTACCTTTACCAGTTCCAAACAGGCCTCAGCCTCCATCTCCTGGGGAAG	10	+	19060732-19060781	10q12	Rattus norvegicus lymphocyte cytosolic protein 2 (Lcp2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence IEA]; The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence ISS]; The regulated release of cytokines from a cell or group of cells. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 50663] [evidence IEA]; The regulated release of cytokines from a cell or group of cells. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 50663] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Slp76	Slp76
Rattus norvegicus	RefSeq	GI_50657381-S	ILMN_289704	BTNL1	NM_001002803.1	NM_001002803.1		407781	50657381	NM_001002803.1	Btnl1	NP_001002803.1	ILMN_1370800	0004070500	S	795	TGGGGAGATACTACTGGGAGGTGGATGTCGAGGACACGGAGGAGTGGACA	20	-	4597389-4597438	20p12	Rattus norvegicus butyrophilin-like 1 (Btnl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62718672-S	ILMN_52791	LOC501449	XM_576860.1	XM_576860.1		501449	62718672	XM_576860.1	LOC501449	XP_576860.1	ILMN_1353664	0006040068	S	1037	CTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGAAGAAAGAGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501449), mRNA.		The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time [goid 3964] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078732-S	ILMN_281400	MAK16	NM_001014002.1	NM_001014002.1		306526	62078732	NM_001014002.1	Mak16	NP_001014024.1	ILMN_1355486	0000050154	S	1582	TTGTAGACGGCTGGCTCGGAAGAACCCCCTCCACTCTAGCCAAGGTGTCA	16	+	64888471-64888520	16q12.3	Rattus norvegicus MAK16 homolog (S. cerevisiae) (Mak16), mRNA.				RGD1311297; MGC109625	RGD1311297; MGC109625
Rattus norvegicus	RefSeq	GI_62662963-S	ILMN_296261	CSMD1	NM_001037327.1	NM_001037327.1		364634	82617647	NM_001037327.1	Csmd1	NP_001032404.1	ILMN_1371507	0006130112	S	223	TATCACTGGGGAGCGCAACCGGATCCAGCTATCCTTCCACACCTTTGCCC	16	+	77798244-77798293	16q12.5	Rattus norvegicus CUB and Sushi multiple domains 1 (Csmd1), mRNA.				Mdcr1	Mdcr1
Rattus norvegicus	RefSeq	GI_62662965-S	ILMN_296261	CSMD1	NM_001037327.1	NM_001037327.1		364634	82617647	NM_001037327.1	Csmd1	NP_001032404.1	ILMN_1353650	0001410603	S	10669	ACCCACAGAGGCCAAGGCTGTGAGGTTTGACACGACTCTGAACACAGTGT	16	+	78602861-78602910	16q12.5	Rattus norvegicus CUB and Sushi multiple domains 1 (Csmd1), mRNA.				Mdcr1	Mdcr1
Rattus norvegicus	RefSeq	GI_62643590-S	ILMN_288203	LOC499643	NM_001024301.1	NM_001024301.1		499643	66730322	NM_001024301.1	LOC499643	NP_001019472.1	ILMN_1359621	0002810278	S	1547	TGCATGGAGTTAGGTAGTACAAAGGCCACAGACATCAGCCCAGTCCCTGG	2	+	170836660-170836672:170836673-170836709	2q32	Rattus norvegicus similar to hypothetical protein FLJ25371 (LOC499643), mRNA.					
Rattus norvegicus	RefSeq	GI_62645299-S	ILMN_270614	PRKRA	NM_001024780.1	NM_001024780.1		311130	67078459	NM_001024780.1	Prkra	NP_001019951.1	ILMN_1356119	0003440288	S	1281	GTACCACAAGGCTGAGTGTGGCATCCATTTTACAGGGTCAGACACATAGG	3	-	59327876-59327925	3q23	Rattus norvegicus protein kinase, interferon inducible double stranded RNA dependent activator (Prkra), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The process by which the anatomical structures of the outer ear are generated and organized. Morphogenesis pertains to the creation of form. The outer ear is the part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull [goid 42473] [evidence ISS]; The process by which the anatomical structures of the outer ear are generated and organized. Morphogenesis pertains to the creation of form. The outer ear is the part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull [goid 42473] [evidence IEA]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657624-S	ILMN_59553	SYNJ1	XM_573256.2	XM_573256.2		85238	109492921	XM_573256.2	Synj1	XP_573256.2	ILMN_1355054	0004850397	S	5781	ACAGTAGGCACCTGCCACCAGATTCCAGGAGGAACACTATCAGTGTGCTC	11	-	30922111-30922160	11q11	PREDICTED: Rattus norvegicus synaptojanin 1 (Synj1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence ISS]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence ISS]; The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [evidence ISS]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IDA]; Catalysis of the conversion of phosphatidylinositol-3-phosphate, phosphatidylinositol-4-phosphate, and phosphatidylinositol-3,5-bisphosphate, but not PI-4,5-bisphosphate, to phosphatidylinositol; PPIPase activity is a key regulator of membrane trafficking and actin cytoskeleton organization [goid 17120] [evidence IEA]; Catalysis of the conversion of phosphatidylinositol-3-phosphate, phosphatidylinositol-4-phosphate, and phosphatidylinositol-3,5-bisphosphate, but not PI-4,5-bisphosphate, to phosphatidylinositol; PPIPase activity is a key regulator of membrane trafficking and actin cytoskeleton organization [goid 17120] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IDA]; Catalysis of the conversion of phosphatidylinositol-3-phosphate, phosphatidylinositol-4-phosphate, and phosphatidylinositol-3,5-bisphosphate, but not PI-4,5-bisphosphate, to phosphatidylinositol; PPIPase activity is a key regulator of membrane trafficking and actin cytoskeleton organization [goid 17120] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate [goid 4439] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9238017] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640796-S	ILMN_54606	ZFP592_PREDICTED	XM_214975.4	XM_214975.4		293038	109458911	XM_214975.4	Zfp592_predicted	XP_214975.3	ILMN_1354654	0006940114	S	4433	CATCCCGAGGACTTCACCTGTCACTCTGACCATGTCTCTGTGGGTGGGAG	1	+	137241845-137241894	1q31	PREDICTED: Rattus norvegicus zinc finger protein 592 (predicted) (Zfp592_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083632-S	ILMN_277560	REM2	NM_022685.1	NM_022685.1		64626	12083632	NM_022685.1	Rem2	NP_073176.1	ILMN_1361500	0004560162	S	714	GAGCTGCAAGCACATAGAGACATCAGCCGCTCTCCACCACAACACTCGTG	15	+	32543504-32543553	15p13	Rattus norvegicus RAS (RAD and GEM) like GTP binding 2 (Rem2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]	MGC156645	MGC156645
Rattus norvegicus	RefSeq	GI_62654842-S	ILMN_54823	LOC367246	XM_576541.1	XM_576541.1		367246	62654842	XM_576541.1	LOC367246	XP_576541.1	ILMN_1355871	0004540014	S	96	TTGCCACCTGCAGAACAAAGCCCAGGAGCTACAGGTTCTTGGGGAGGAGC				9q21	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S14 (LOC367246), mRNA.					
Rattus norvegicus	RefSeq	GI_62642429-S	ILMN_63990	LOC499366	XM_574679.1	XM_574679.1		499366	62642429	XM_574679.1	LOC499366	XP_574679.1	ILMN_1366931	0004670451	S	935	CCGTACAATGGTCCACCATCAAAGACAAAGGGAAGGAGCACTCTGTCTCC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC499366), mRNA.					
Rattus norvegicus	RefSeq	GI_34882904-S	ILMN_50183	LOC302282	XM_229908.3	XM_229908.3		302282	109513806	XM_229908.3	LOC302282	XP_229908.3	ILMN_1356250	0002060044	S	176	TGGATCCACGAGCCATGGCAGTGCTGGAAAAGTGGCAAAATTCCCACAGC	Un|NW_047932.1	+	78536-78585		PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 variant 1 (LOC302282), mRNA.		The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50657361-S	ILMN_271471	C4-2	NM_001002805.1	NM_001002805.1		406161	50657361	NM_001002805.1	C4-2	NP_001002805.1	ILMN_1361837	0001050465	S	5050	GTCACCAGTGACCTCAAGGGAGACCCCCAGTACTTGCTGGACTCAAACAG	20	+	4315754-4315779:4315780-4315803	20p12	Rattus norvegicus complement component 4, gene 2 (C4-2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway [goid 6956] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	C4l	C4l
Rattus norvegicus	RefSeq	GI_62657699-S	ILMN_63394	LOC501756	XM_577156.1	XM_577156.1		501756	62657699	XM_577156.1	LOC501756	XP_577156.1	ILMN_1364425	0006020347	S	2496	GTCTGGAGATTCCTCAGAAAAGTGGACATTGAACTGCCTGAGGATCCAGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501756), mRNA.					
Rattus norvegicus	RefSeq	GI_62640425-S	ILMN_48356	MCEE_PREDICTED	XM_215213.3	XM_215213.3		293829	109458868	XM_215213.3	Mcee_predicted	XP_215213.3	ILMN_1353995	0003780161	S	496	TCCGCAGTCTGAGTGATGAGGCCAAAATAGGGGCACATGGGAAACCCGTG	1	+	118855850-118855899	1q22	PREDICTED: Rattus norvegicus methylmalonyl CoA epimerase (predicted) (Mcee_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078546-S	ILMN_269672	RGD1306583	NM_001013908.1	NM_001013908.1		294709	62078546	NM_001013908.1	RGD1306583	NP_001013930.1	ILMN_1358860	0004540075	S	1377	GTCCTCAGTACAGGGGCTCCAAAGCGTGTCTGGCTTAAGACTCACGGACA	2	-	35069509-35069537:35069669-35069689	2q13	Rattus norvegicus similar to RIKEN cDNA 2410002O22 gene (RGD1306583), mRNA.					
Rattus norvegicus	RefSeq	GI_62656236-S	ILMN_55667	MAP2K4_PREDICTED	XM_220604.3	XM_220604.3		287398	62656236	XM_220604.3	Map2k4_predicted	XP_220604.2	ILMN_1369256	0006420348	S	3120	GCCGTGGAGTCCACATGTTTATGGAATAGTCTACCCTTTGCCTGCAGGTC				10q24	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase 4 (predicted) (Map2k4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577480-S	ILMN_294064	OLR47	NM_001000123.1	NM_001000123.1		293189	47577480	NM_001000123.1	Olr47	NP_001000123.1	ILMN_1360279	0004920358	S	663	CGTGATGATTTTCAGGGCTGTGTTGGGATTGTCCACCTCTGATGCCAGGT	1	-	160258525-160258574	1q32	Rattus norvegicus olfactory receptor 47 (Olr47), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr47	Olr47
Rattus norvegicus	RefSeq	GI_52138734-A	ILMN_296512	SPATA21	NM_001004447.1	NM_001004447.1		366491	52138734	NM_001004447.1	Spata21	NP_001004447.1	ILMN_1376490	0001190047	S	2236	TTCCTCCAGCCAGGACAGCAAGGAAGCAGGGAACACAGCTCCGACAGTAG	5	+	159972326-159972354:159972738-159972758	5q36	Rattus norvegicus spermatogenesis associated 21 (Spata21), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC105642; Spergen3	MGC105642; Spergen3
Rattus norvegicus	RefSeq	GI_62657143-S	ILMN_274876	SLC25A39	NM_001024792.1	NM_001024792.1		360636	67078433	NM_001024792.1	Slc25a39	NP_001019963.1	ILMN_1352222	0000870184	S	1200	CAACTGGCTCTTGCCCGGGTGGGAACAGGAGACTGAGCCAAGTGCCTTCC	10	-	91511074-91511123	10q32.1	Rattus norvegicus solute carrier family 25, member 39 (Slc25a39), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865967-A	ILMN_270659	ARHGAP9	XM_001056068.1	XM_001056068.1		362893	109482073	XM_001056068.1	Arhgap9	XP_001056068.1	ILMN_1376877	0004810129	S	2302	TCTTGGCTGAGAGGGGTTGCCGAAGAGGAAGGCGTCGGAGCTTACTTCCG				7q22	PREDICTED: Rattus norvegicus Rho GTPase activating protein 9 (Arhgap9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652268-S	ILMN_270659	ARHGAP9	XM_001056068.1	XM_001056068.1		362893	109482073	XM_001056068.1	Arhgap9	XP_001056068.1	ILMN_1348984	0002230725	S	427	GGAATCAGTCTCCTGCCACAACCCAGCAGGCAGTACCCACAACAGTTCCC				7q22	PREDICTED: Rattus norvegicus Rho GTPase activating protein 9 (Arhgap9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652272-S	ILMN_270659	ARHGAP9	XM_001056068.1	XM_001056068.1		362893	109482073	XM_001056068.1	Arhgap9	XP_001056068.1	ILMN_1348820	0005360332	S	2624	AACATGGCAGTCGGTAACATGAGTGTCTTACTGGGGTCTCTGCCTGGAGA				7q22	PREDICTED: Rattus norvegicus Rho GTPase activating protein 9 (Arhgap9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62718628	ILMN_49843	LOC503386	XM_578923.1	XM_578923.1		503386	62718628	XM_578923.1	LOC503386	XP_578923.1	ILMN_1650894	0004850215	S	1	ATGACGACCAAGCTAATTAGGACAAAACGAAAACACCTGTCCTTCGAAAG					PREDICTED: Rattus norvegicus similar to TDPOZ2 (LOC503386), mRNA.					
Rattus norvegicus	RefSeq	GI_62659625-S	ILMN_59918	TBX19_PREDICTED	XM_222834.4	XM_222834.4		304935	109498123	XM_222834.4	Tbx19_predicted	XP_222834.4	ILMN_1357103	0000130088	S	1278	ACGCCAGCGCCTCAGGAACCTTTCTCCTTGGGAGCCCTACTGTCACTTCA	13	-	80891994-80892043	13q23	PREDICTED: Rattus norvegicus T-box 19 (predicted) (Tbx19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644335-S	ILMN_277138	NHLH2_PREDICTED	XM_001062697.1	XM_001062697.1		295327	109467270	XM_001062697.1	Nhlh2_predicted	XP_001062697.1	ILMN_1368198	0003450575	S	155	GTAGACACCAAGGTGCTGGGCAGCGTGTCGGACCTGGAGCCAGTGGAGGA				2q34	PREDICTED: Rattus norvegicus nescient helix loop helix 2 (predicted) (Nhlh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657147-S	ILMN_293792	RGD1563746_PREDICTED	XM_001081519.1	XM_001081519.1		303572	109491990	XM_001081519.1	RGD1563746_predicted	XP_001081519.1	ILMN_1371711	0004480156	S	1333	GCACTGCAGATGACCTTGCCAAAAACAGCAAGTACAGCGGGCCAGGCTGA				10q32.1	PREDICTED: Rattus norvegicus similar to nuclear protein with a coiled coil-4 domain of bilaterial origin like (3L720) (predicted) (RGD1563746_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649606-S	ILMN_264740	RGD1559610_PREDICTED	XM_001056249.1	XM_001056249.1		313581	109477196	XM_001056249.1	RGD1559610_predicted	XP_001056249.1	ILMN_1349195	0004050364	S	1194	GATGTGAGCGGCTACTGCAGGCATTCTGGTTTATGTTCCCCGTTTGGGAG				5q36	PREDICTED: Rattus norvegicus similar to CGI-94 protein (predicted) (RGD1559610_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718344-S	ILMN_54805	LOC501373	XM_576786.2	XM_576786.2		501373	109513427	XM_576786.2	LOC501373	XP_576786.2	ILMN_1358951	0005890402	S	481	GCAGCTCTGTGTCCATCTCTTCTGTTGTTTGAATATCACTGTGCCGTGGG	Un|NW_047883.1	+	2024883-2024932		PREDICTED: Rattus norvegicus hypothetical LOC501373 (LOC501373), mRNA.					
Rattus norvegicus	RefSeq	GI_34882620-S	ILMN_54805	LOC501373	XM_576786.2	XM_576786.2		501373	109513427	XM_576786.2	LOC501373	XP_576786.2	ILMN_1356864	0002260672	S	122	CCCCTGAAAATGTCCTAAACAAGGTGCAGGCCAACGAGGAAGAGGATAGA	Un|NW_047883.1	+	2023330-2023379		PREDICTED: Rattus norvegicus hypothetical LOC501373 (LOC501373), mRNA.					
Rattus norvegicus	RefSeq	GI_57012335-S	ILMN_262438	KRT82	NM_001008803.1	NM_001008803.1		366991	57012335	NM_001008803.1	Krt82	NP_001008803.1	ILMN_1351781	0003610168	S	1342	CTGAGGAACAGTGGGGGCTGCAGCGTGGTGGGCACCGGTGAACTCTACAT	7	-	140296539-140296588	7q36	Rattus norvegicus keratin 82 (Krt82), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657947-S	ILMN_62787	LOC311382	XM_230560.2	XM_230560.2		311382	62657947	XM_230560.2	LOC311382	XP_230560.2	ILMN_1370012	0003390647	S	449	CACTGTGCCATGCAAGAAGCTACTGATGATGGCCTGCACTGCCACCCTGG				11q22	PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC311382), mRNA.					
Rattus norvegicus	RefSeq	GI_62662632-S	ILMN_301360	TLR3	XM_001061463.1	XM_001061463.1		364594	109504193	XM_001061463.1	Tlr3	XP_001061463.1	ILMN_1355463	0000360731	S	2762	AGAACGGATAAACGCCTTTCATCATAAACTGCAAGTAGCACTTGGGTCTC				16q11	PREDICTED: Rattus norvegicus toll-like receptor 3 (Tlr3), mRNA.	The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31224] [evidence IEA]	Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence IDA]; The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2282] [evidence IDA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; The appearance of interleukin-6 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32635] [evidence ISS]; The appearance of tumor necrosis factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32640] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus [goid 43331] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45078] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma [goid 45078] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-alpha [goid 45356] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-beta [goid 45359] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS];  [goid 52033] [evidence IDA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IDA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638698-S	ILMN_62384	LOC365129	XM_344830.2	XM_344830.2		365129	62638698	XM_344830.2	LOC365129	XP_344831.2	ILMN_1370622	0002470184	S	201	TGGTGGACCAGCTGGTTCCTCAAGAGTCAGTGCACAGCAGCATTCCTCAC					PREDICTED: Rattus norvegicus similar to eIF4G eukaryotic initiation factor 4, Nic domain containing protein (LOC365129), mRNA.					
Rattus norvegicus	RefSeq	GI_62661456-S	ILMN_65622	RGD1560161_PREDICTED	XM_573774.2	XM_573774.2		498515	109501602	XM_573774.2	RGD1560161_predicted	XP_573774.2	ILMN_1370836	0000070433	S	2524	AGGACCCCAGCGTTCCCCCGTACGACTCCGTGCAGGTGTATGGCTATGAG	15	-	32710356-32710405	15p13	PREDICTED: Rattus norvegicus similar to Cadherin-like 24 (predicted) (RGD1560161_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643272-S	ILMN_287907	AADACL1_PREDICTED	XR_008069.1	XR_008069.1		294930	109466459	XR_008069.1	Aadacl1_predicted		ILMN_1364273	0006400039	S	1171	AAGCGCCTGGAGAGTGCGGGTGTGAACGTGACCTTGGACCACTTTGAGGA				2q24	PREDICTED: Rattus norvegicus arylacetamide deacetylase-like 1 (predicted) (Aadacl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643233-S	ILMN_60692	RGD1562486_PREDICTED	XM_574904.2	XM_574904.2		499579	109464645	XM_574904.2	RGD1562486_predicted	XP_574904.1	ILMN_1366204	0005220600	S	718	GGGCTCATGGAGGGTCCACAGCTCCTCTTTTTGGTTCAGCCGTGTCTCTG	2	+	104687314-104687363	2q24	PREDICTED: Rattus norvegicus similar to DnaJ homolog subfamily C member 5B (Beta cysteine string protein) (predicted) (RGD1562486_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665312-S	ILMN_276263	RGD1560118_PREDICTED	XM_001078056.1	XM_001078056.1		361412	109508948	XM_001078056.1	RGD1560118_predicted	XP_001078056.1	ILMN_2039182	0000650279	S	3320	GCCTGGACTGAGTGTTCTGCAACCTGTGGCTTGGGTGTGAGGAAGAGAGA				19q12	PREDICTED: Rattus norvegicus similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18 isoform 1 preproprotein (predicted) (RGD1560118_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642740-S	ILMN_58825	ARSB	XM_345140.2	XM_345140.2		25227	62642740	XM_345140.2	Arsb	XP_345141.2	ILMN_1366780	0002470270	S	3238	CCGCTGGCAGGAGAGTGCTCTGTATATGTGGACAGTCGTTGAATGGCAGG				2q12	PREDICTED: Rattus norvegicus arylsulfatase B (Arsb), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]	The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IDA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties [goid 30203] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus [goid 51597] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of the 4-sulfate groups of the N-acetyl-D-galactosamine 4-sulfate units of chondroitin sulfate and dermatan sulfate [goid 3943] [evidence IEA]; Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence TAS]; Catalysis of the reaction: a phenol sulfate + H2O = a phenol + SO4(2-) (sulfate) [goid 4065] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2 [goid 8484] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2 [goid 8484] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653333-S	ILMN_272676	RGD1563250_PREDICTED	XM_001077527.1	XM_001077527.1		300441	109484375	XM_001077527.1	RGD1563250_predicted	XP_001077527.1	ILMN_1350660	0004010427	S	509	CACAGCTACCATGTGGGCCCTGCAGAGTATAGAGAAAGAGCGAGGCCTGG				8q13	PREDICTED: Rattus norvegicus RGD1563250 (predicted) (RGD1563250_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078578-S	ILMN_280286	NUB1	NM_001013925.1	NM_001013925.1		296731	62078578	NM_001013925.1	Nub1	NP_001013947.1	ILMN_1372726	0002360022	S	2326	CCTTGAGTCTCCAAGTGCTGTCGAGCACAGCAGCAAGGTACCAGCCGTCA	4	-	5820655-5820704	4q11	Rattus norvegicus negative regulator of ubiquitin-like proteins 1 (Nub1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	NYREN18; BS4	NYREN18; BS4
Rattus norvegicus	RefSeq	GI_62650178-S	ILMN_67943	CENTB5_PREDICTED	XM_233719.4	XM_233719.4		313772	109475910	XM_233719.4	Centb5_predicted	XP_233719.4	ILMN_1349431	0002470577	S	2238	CCTCCTGCAAAATGGAGCTGATGTGAACCAAAGAGACAGCCTTGGCCGGG	5	+	172762570-172762619	5q36	PREDICTED: Rattus norvegicus centaurin, beta 5 (predicted) (Centb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641242-S	ILMN_270900	RGD1304759_PREDICTED	XM_001076297.1	XM_001076297.1		293452	109462803	XM_001076297.1	RGD1304759_predicted	XP_001076297.1	ILMN_1368829	0006980390	S	1981	CCAAAGAGAGCCAGGCCTTTGGCAGCCCCGTGTTTCAGCTGCTGGCAATT				1q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21816 (predicted) (RGD1304759_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656682-S	ILMN_63225	TAF15_PREDICTED	XM_237792.4	XM_237792.4		287571	109488701	XM_237792.4	Taf15_predicted	XP_237792.4	ILMN_1357221	0006100446	S	1941	GTTATGGAGGCGACAGAGGTGGCTATGGAGGAGACCGAGGTGGCTATGGA	10	+	71586284-71586333	10q26	PREDICTED: Rattus norvegicus TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34877985-S	ILMN_274675	RGD1566007_PREDICTED	XM_001074411.1	XM_001074411.1		367332	109514316	XM_001074411.1	RGD1566007_predicted	XP_001074411.1	ILMN_1371188	0002120364	S	603	GACCGCCGGGTTTGTCCCCTTCCAAAGAGTTACTGATAAAGATACTGGGG				9q37	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1566007_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664586-S	ILMN_65975	LOC502176	XM_577634.1	XM_577634.1		502176	62664586	XM_577634.1	LOC502176	XP_577634.1	ILMN_1366368	0005700129	S	303	AGCAGTGACGGTGATGCCCCCAGCCCTGCCACCATTCCGTGGACATTTTT				18q12.1	PREDICTED: Rattus norvegicus similar to Ab1-331 (LOC502176), mRNA.					
Rattus norvegicus	RefSeq	GI_62658375-S	ILMN_271299	RGD1560846_PREDICTED	XM_573344.1	XM_573344.1		498133	62658375	XM_573344.1	RGD1560846_predicted	XP_573344.2	ILMN_1353685	0004120148	S	893	GGAAAACAAAGTCACAGGAAGAGACCGTGAGACCGGTGGACAGAGGAAGC	12	-	6065392-6065412:6065413-6065441	12p11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC40178 (predicted) (RGD1560846_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47058983-S	ILMN_280044	USH1C	XM_001080105.1	XM_001080105.1		308596	109461978	XM_001080105.1	Ush1c	XP_001080105.1	ILMN_1361235	0004670066	S	2390	CCCGTGGGGAAGGTGGTCGTCTCTGCTGTTTATGAAGGAGGAGCTGCAGA				1q22	PREDICTED: Rattus norvegicus Usher syndrome 1C homolog (human), transcript variant 1 (Ush1c), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IDA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence IEA]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence IDA]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence IEA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; Assembly of actin filament bundles in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity [goid 30046] [evidence IEA]; Assembly of actin filament bundles in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity [goid 30046] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence ISS]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence IPI]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion [goid 50957] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IPI]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663546-S	ILMN_61463	LOC502124	XM_577572.1	XM_577572.1		502124	62663546	XM_577572.1	LOC502124	XP_577572.1	ILMN_1355357	0002470722	S	549	TTTTGCTACTTCATGTGGTCTTCCAGCGCCAGATGCGCTCGGTTTCCTCG					PREDICTED: Rattus norvegicus similar to thymine DNA glycosylase (LOC502124), mRNA.					
Rattus norvegicus	RefSeq	GI_62649386-S	ILMN_288790	RGD1559786	NM_001034132.1	NM_001034132.1		298384	77627995	NM_001034132.1	RGD1559786	NP_001029304.1	ILMN_1372093	0004120685	S	1225	ACTGAGTCTCGTGGAACCGAAGATCCCCACACAGCAGACAGAGCTGTGAG	5	+	128999163-128999212	5q35	Rattus norvegicus similar to RIKEN cDNA 0610037L13 (RGD1559786), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC112851	MGC112851
Rattus norvegicus	RefSeq	GI_62654786-A	ILMN_52301	LOC689123	XM_237012.4	XM_237012.4		689123	109485881	XM_237012.4	LOC689123	XP_237012.4	ILMN_1376335	0004050465	S	1147	CGGTCATCTCAGAACATTTGTAAGACGGGAGACAGTACGGATGCCCTCAG	9	-	20181901-20181950	9q13	PREDICTED: Rattus norvegicus similar to Potassium voltage-gated channel subfamily KQT member 5 (Voltage-gated potassium channel subunit Kv7.5) (Potassium channel alpha subunit KvLQT5) (KQT-like 5) (LOC689123), mRNA.					
Rattus norvegicus	RefSeq	GI_62667280-S	ILMN_295542	LOC678833	XM_001053398.1	XM_001053398.1		678833	109512350	XM_001053398.1	LOC678833	XP_001053398.1	ILMN_1354711	0005700487	S	888	GGGGTCAGAAGGACTTGGAAGATGCTCCATTTGTTTAATGCCTTCAGCCT					PREDICTED: Rattus norvegicus similar to transcription elongation factor A (SII)-like 5 (LOC678833), mRNA.					
Rattus norvegicus	RefSeq	GI_62648754-S	ILMN_62141	LOC500428	XM_575790.1	XM_575790.1		500428	62648754	XM_575790.1	LOC500428	XP_575790.1	ILMN_1361248	0004150128	S	1182	GGGAGACCTATCAGAATCACACCAGACTTCTCGCCAAAAACTATGAAGGC					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC500428), mRNA.					
Rattus norvegicus	RefSeq	GI_62645856-S	ILMN_56013	LOC499887	XM_580029.1	XM_580029.1		499887	62645856	XM_580029.1	LOC499887	XP_580029.1	ILMN_1357436	0001740435	S	595	CAAGAGGGAAGAGGATTAGCCATGACGGAGCTGGGCCTTGAGCCACACAG					PREDICTED: Rattus norvegicus LOC499887 (LOC499887), mRNA.					
Rattus norvegicus	RefSeq	GI_57012361-S	ILMN_283440	KRT72	NM_001008809.1	NM_001008809.1		406227	57012361	NM_001008809.1	Krt72	NP_001008809.1	ILMN_1358550	0005080025	S	1375	GTTGTTAGCAGTACCAATGCAGGACCAGGAGGGGCTGGCTTCAGTGTGGG	7	-	140470478-140470527	7q36	Rattus norvegicus keratin 72 (Krt72), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577282-S	ILMN_281384	OLR401	NM_001000829.1	NM_001000829.1		405118	47577282	NM_001000829.1	Olr401	NP_001000829.1	ILMN_1360679	0006020279	S	354	GGCATATGACAGATATGTGGCAATCTGCCACCCGCTTCACTATACCACCA	3	+	15829043-15829092	3p11	Rattus norvegicus olfactory receptor 401 (Olr401), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr401	Olr401
Rattus norvegicus	RefSeq	GI_50540543-S	ILMN_264121	FZD1	NM_021266.2	NM_021266.2		58868	50540543	NM_021266.2	Fzd1	NP_067089.1	ILMN_1350645	0000730438	S	3629	CTTACTTCTCAGCAGCACATTCTGAGGGAGGAGCAGTCACACCCCCACAG	4	+	25998051-25998100	4q13	Rattus norvegicus frizzled homolog 1 (Drosophila) (Fzd1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; Any process that modulates the frequency, rate or extent of osteoblast differentiation [goid 45667] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4926] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393556-S	ILMN_301729	HPD	NM_017233.1	NM_017233.1		29531	8393556	NM_017233.1	Hpd	NP_058929.1	ILMN_1363200	0000110706	S	1148	TCGAAGAGGAGCAAGCCCTACGGGGTAACCTCACTGACCTGGAGACCAAC	12	+	34558285-34558334	12q16	Rattus norvegicus 4-hydroxyphenylpyruvate dioxygenase (Hpd), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid [goid 6559] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6572] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6572] [evidence IEA]; The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9072] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2 [goid 3868] [evidence TAS]; Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2 [goid 3868] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13676838-S	ILMN_297798	PARD3	NM_031235.1	NM_031235.1		81918	13676838	NM_031235.1	Pard3	NP_112514.1	ILMN_1361812	0001170347	S	5259	TCACAAACAGAAGGAGAGCCATCCCACTCGAGGACCTGTCGATGTCCCTC	19	+	57603043-57603092	19q12	Rattus norvegicus par-3 (partitioning defective 3) homolog (C. elegans) (Pard3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence NAS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Par3	Par3
Rattus norvegicus	RefSeq	GI_62648313-S	ILMN_284743	RGD1561551_PREDICTED	XM_001074172.1	XM_001074172.1		500359	109474452	XM_001074172.1	RGD1561551_predicted	XP_001074172.1	ILMN_1362645	0001580341	S	678	CTGCGATCCCAATCACGTCATCTGTGCCCTCACGTCCAACAGGAACCTGG				4q44	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC75664 (predicted) (RGD1561551_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661630	ILMN_52909	MSRA	XM_573806.1	XM_573806.1		29447	62661630	XM_573806.1	Msra	XP_573806.1	ILMN_1650581	0002650181	S	1107	CCACATAACAGAACAAGCTGCACTGACCCTGCCTGCTCACACCCTGGACG				15p12	PREDICTED: Rattus norvegicus methionine sulfoxide reductase A (Msra), mRNA.		The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence NAS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin [goid 8113] [evidence IDA]; Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin [goid 8113] [evidence ISS]; Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin [goid 8113] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50657354-S	ILMN_280743	TOP1MT	NM_001002798.1	NM_001002798.1		300029	50657354	NM_001002798.1	Top1mt	NP_001002798.1	ILMN_1371133	0000940440	S	1618	CTGTGCACGAAGGCCACAGACAAGGAGGAGAATAAGCAAGTGGCCCTGGG	7	-	113596768-113596817	7q34	Rattus norvegicus DNA topoisomerase 1, mitochondrial (Top1mt), nuclear gene encoding mitochondrial protein, mRNA.	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence IEA]; The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication [goid 6268] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle [goid 3917] [evidence IEA]; Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2 [goid 3918] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16923997-S	ILMN_301869	HNRNPK	NM_057141.1	NM_057141.1		117282	16923997	NM_057141.1	Hnrnpk	NP_476482.1	ILMN_1366807	0003850152	S	2147	GTCGTGGGGAACTGCGGTGGGGAGCAATACTACAAGAGTAAGCATCTGAG	17	+	12205304-12205353	17p14	Rattus norvegicus heterogeneous nuclear ribonucleoprotein K (Hnrnpk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IDA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Csbp	Csbp
Rattus norvegicus	RefSeq	GI_62647800-S	ILMN_264730	LOC684722	XM_001071718.1	XM_001071718.1		684722	109473753	XM_001071718.1	LOC684722	XP_001071718.1	ILMN_1365206	0001450563	S	199	CCAGGAGCCGAGCTTCACAGTTGTACCACACACTTGACAGAATCCGAAGA					PREDICTED: Rattus norvegicus similar to Aspartate aminotransferase, mitochondrial precursor (Transaminase A) (Glutamate oxaloacetate transaminase 2) (LOC684722), mRNA.					
Rattus norvegicus	RefSeq	GI_62664371-A	ILMN_276039	LOX	NM_017061.1	NM_017061.1		24914	8393732	NM_017061.1	Lox	NP_058757.1	ILMN_1376823	0004920725	S	4473	GTCCCATATGACTGCTTGCTGCGTACTAGGGGACATGCCATTTGGTGTTA	18	-	47893904-47893953	18q11	Rattus norvegicus lysyl oxidase (Lox), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IDA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IMP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence IEA]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence ISS]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + H2O2 [goid 4720] [evidence IEA]; Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + H2O2 [goid 4720] [evidence ISS]; Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + H2O2 [goid 4720] [evidence IDA]; Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + H2O2 [goid 4720] [evidence IMP]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	H-rev142; Rrg1	H-rev142; Rrg1
Rattus norvegicus	RefSeq	GI_62648035-S	ILMN_49268	IL17RC_PREDICTED	XM_216240.4	XM_216240.4		297520	109472477	XM_216240.4	Il17rc_predicted	XP_216240.4	ILMN_1358588	0006400670	S	375	CTGCAGACGGAGCTGGTACTCAGGTGTCCACAAGAGACAGATTGCGCCCT	4	+	149363307-149363356	4q42	PREDICTED: Rattus norvegicus interleukin 17 receptor C (predicted) (Il17rc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648037-S	ILMN_49268	IL17RC_PREDICTED	XM_216240.4	XM_216240.4		297520	109472477	XM_216240.4	Il17rc_predicted	XP_216240.4	ILMN_1369538	0003520739	S	2019	GATTTCCTGCAAGGCCAGGCGACCGGCCGCTACGTCGGGGTCTACTTTGA	4	+	149374614-149374663	4q42	PREDICTED: Rattus norvegicus interleukin 17 receptor C (predicted) (Il17rc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928825-S	ILMN_59883	ATP6V0A1	NM_031604.2	NM_031604.2		29757	77627989	NM_031604.2	Atp6v0a1	NP_113792.2	ILMN_1358792	0003850142	S	3672	GGAGCGCTGCTAAGCCCTTGCCGCCTACCTCATGTACTGTGGATCTCAGA				10q32.1	Rattus norvegicus ATPase, H+ transporting, lysosomal V0 subunit A1 (Atp6v0a1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]	Atp6n1; Atp6n1a	Atp6n1; Atp6n1a
Rattus norvegicus	RefSeq	GI_19924048-S	ILMN_283868	KLC3	NM_138520.1	NM_138520.1		171549	19924048	NM_138520.1	Klc3	NP_612529.1	ILMN_1366127	0001690577	S	1415	GAGCCATGTCACTCAATATGCTGAACGTCGATGGTCCAAGGGCTGCCAGG				1q21	Rattus norvegicus kinesin light chain 3 (Klc3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence TAS]; Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm [goid 35253] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]		Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence TAS]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Phosphatidylglycerol + phosphatidylglycerol = diphosphatidylglycerol (cardiolipin) + glycerol [goid 8808] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]	MGC114264; Klct	MGC114264; Klct
Rattus norvegicus	RefSeq	GI_34864616-S	ILMN_56036	LOC300708	XM_213128.2	XM_213128.2		300708	34864616	XM_213128.2	LOC300708	XP_213128.2	ILMN_1372193	0001190451	S	189	GTGGGCGATCTAGCAGAACTCTTTCAGTGAAAGTCTGAGGCAGAGCCTGA					PREDICTED: Rattus norvegicus similar to RS21-C6 protein (LOC300708), mRNA.					
Rattus norvegicus	RefSeq	GI_62644518-S	ILMN_283093	LOC687582	XM_001079241.1	XM_001079241.1		687582	109467759	XM_001079241.1	LOC687582	XP_001079241.1	ILMN_1354168	0003780487	S	2039	ACAGTGACCTGGAGCTGAGAGAGAAGGCTGCAGAATGCACAGCACTGTCC					PREDICTED: Rattus norvegicus similar to outer dense fiber of sperm tails 2-like (LOC687582), mRNA.					
Rattus norvegicus	RefSeq	GI_62718622-S	ILMN_49512	LOC501440	XM_576849.1	XM_576849.1		501440	62718622	XM_576849.1	LOC501440	XP_576849.1	ILMN_1372481	0007040047	S	349	TTTATAAATGTATTTACAGAAGATCTGAGGATTTAAAGACTTGTGCAGAT					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501440), mRNA.					
Rattus norvegicus	RefSeq	GI_62648534-S	ILMN_285224	DEPDC2_PREDICTED	XM_001065960.1	XM_001065960.1		312912	109476035	XM_001065960.1	Depdc2_predicted	XP_001065960.1	ILMN_1350683	0001410368	S	4905	TGTGACACTGGAGCAAGCCATCACTCTAGCAAGAAGCCACGGGCTCCCTC				5q11	PREDICTED: Rattus norvegicus DEP domain containing 2 (predicted) (Depdc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981659-S	ILMN_296682	TMPO	NM_012887.1	NM_012887.1		25359	6981659	NM_012887.1	Tmpo	NP_037019.1	ILMN_1371550	0007050044	S	3295	AAGGTCGCTCTGGATAGGGAAGTGTGGTCCAGTACAGTGAAAGTCGGACC	7	-	28086727-28086776	7q13	Rattus norvegicus thymopoietin (Tmpo), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The reformation of the nuclear envelope following its breakdown in the context of a normal process [goid 31468] [evidence NAS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope [goid 5521] [evidence TAS]	LAP2	LAP2
Rattus norvegicus	RefSeq	GI_47577232	ILMN_265505	OLR733_PREDICTED	XM_001077596.1	XM_001077596.1		404810	109470282	XM_001077596.1	Olr733_predicted	XP_001077596.1	ILMN_1650184	0002230446	S	220	GCCCAAATAGTTCTCATCTTTCCTTTGCCCTTCTGTGGACCCAATACCAT				3q24	PREDICTED: Rattus norvegicus olfactory receptor 733 (predicted) (Olr733_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591889-S	ILMN_264985	AMHR2	NM_030998.1	NM_030998.1		29530	13591889	NM_030998.1	Amhr2	NP_112260.1	ILMN_1369508	0003840685	S	1832	TGCGTGTGTCGGGTGTCAGCCTCATGCCTGTTGATGTCATTCTGTGTGGG	7	+	141212561-141212610	7q36	Rattus norvegicus anti-Mullerian hormone receptor, type II (Amhr2), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IDA]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence ISS]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I activin receptor [goid 5026] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence ISS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646729-S	ILMN_275199	RGD1561560_PREDICTED	XM_001060681.1	XM_001060681.1		502711	109472943	XM_001060681.1	RGD1561560_predicted	XP_001060681.1	ILMN_1365260	0002510400	S	1353	AACTGGGGACAAGCCCAGCTCTACCTCACCCATCTCAGGGTCACACAGAC				4q11	PREDICTED: Rattus norvegicus similar to Gpd1l protein (predicted) (RGD1561560_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27674058-S	ILMN_272554	LOC498453	XM_001059640.1	XM_001059640.1		498453	109502152	XM_001059640.1	LOC498453	XP_001059640.1	ILMN_1359903	0001780088	S	840	GACCAAAGAAGCCATCAGGGAGCATCAGATGGCCAAGACTGGTGGGACCC				15p16	PREDICTED: Rattus norvegicus similar to transcription elongation factor A (SII) 1, transcript variant 2 (LOC498453), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase [goid 6354] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661123-S	ILMN_272554	LOC498453	XM_001059640.1	XM_001059640.1		498453	109502152	XM_001059640.1	LOC498453	XP_001059640.1	ILMN_1371058	0006420110	S	2046	GCAGTGGCTTTCACATCGTTTTCTTGACACAGACGTCCTAATGCACAGAG				15p16	PREDICTED: Rattus norvegicus similar to transcription elongation factor A (SII) 1, transcript variant 2 (LOC498453), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase [goid 6354] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652699-S	ILMN_269422	RABL4_PREDICTED	XM_001075907.1	XM_001075907.1		300062	109482537	XM_001075907.1	Rabl4_predicted	XP_001075907.1	ILMN_1351196	0006420088	S	721	CATCTGTGAAGGAGATGGACAACTACGAGGCCCCATTCCACTGTCTGGCC				7q34	PREDICTED: Rattus norvegicus RAB, member of RAS oncogene family-like 4 (predicted) (Rabl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656596-S	ILMN_58046	POLDIP2_PREDICTED	XM_237790.4	XM_237790.4		287544	109488593	XM_237790.4	Poldip2_predicted	XP_237790.4	ILMN_1371358	0006900037	S	1722	GCCGCTTTCGGGGCTACTTTCAGGTGGACAGGAGTCAGAATTGGGCTGCA	10	+	64631883-64631932	10q25	PREDICTED: Rattus norvegicus polymerase (DNA-directed), delta interacting protein 2 (predicted) (Poldip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556762-S	ILMN_284278	GDF6	NM_001013038.1	NM_001013038.1		252834	61556762	NM_001013038.1	Gdf6	NP_001013056.1	ILMN_1350352	0005050142	S	1490	CCAGGGACCACGGAGGAAGGCCTAACTGCTGAGAGAGAAGCAGGAGCTGT	5	+	23756054-23756103	5q13	Rattus norvegicus growth differentiation factor 6 (Gdf6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence NAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the activin family binding to a cell surface receptor [goid 32924] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	gdf16	gdf16
Rattus norvegicus	RefSeq	GI_62657944-S	ILMN_288300	RGD1560676_PREDICTED	XM_573293.1	XM_573293.1		498087	62657944	XM_573293.1	RGD1560676_predicted	XP_573293.1	ILMN_1364315	0003190739	S	193	GTAGGGTGTGGTTGTTACGTCCACCTAAGAGTCTTCAGTGGTATATCCAA	11	+	66359881-66359930	11q22	PREDICTED: Rattus norvegicus similar to stefin A2 (predicted) (RGD1560676_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424341-S	ILMN_266468	ZHX1	NM_133620.1	NM_133620.1		171159	19424341	NM_133620.1	Zhx1	NP_598304.1	ILMN_1370244	0002120358	S	4002	CCTACTGACTTGTAACAGACTGGTGCTGACGTTCGTGCTGGGAAGGACCC	7	-	94754323-94754372	7q33	Rattus norvegicus zinc fingers and homeoboxes 1 (Zhx1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27704847-S	ILMN_161789	LOC309650	XM_228044.1	XM_228044.1			27704847	XM_228044.1	LOC309650		ILMN_2040327	0006020356	S	1912	CTTCATCGTAGGAGGAGGGAGACGGGAAGGAGCCAAAGGTTGGCAGCGTT										
Rattus norvegicus	RefSeq	GI_62648668-S	ILMN_58117	RGD1306507_PREDICTED	XM_232785.4	XM_232785.4		313063	109474670	XM_232785.4	RGD1306507_predicted	XP_232785.4	ILMN_1363285	0005690551	S	2300	GCCTTTCTGGGGCGGTTGTAGACCTAACCAGATCATCCGAACAGATCCAG	5	+	25896659-25896708	5q13	PREDICTED: Rattus norvegicus similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog of, B (predicted) (RGD1306507_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643953-S	ILMN_50515	LOC310612	XM_227385.3	XM_227385.3		310612	62643953	XM_227385.3	LOC310612	XP_227385.3	ILMN_1355274	0002480010	S	1405	ACAACCCCACCAGACAGCCTTTGGCCCTGAACATTCTGGCTGCAGGACTG					PREDICTED: Rattus norvegicus similar to interleukin enhancer binding factor 2 (LOC310612), mRNA.					
Rattus norvegicus	RefSeq	GI_62654102-S	ILMN_63386	LOC501038	XM_576449.1	XM_576449.1		501038	62654102	XM_576449.1	LOC501038	XP_576449.1	ILMN_1362154	0001780707	S	177	GAAGCTGCTCCTAGGCTTCCCTGGACTGTGTAAAGATCCTGCCAGTGGAG					PREDICTED: Rattus norvegicus similar to Ab2-060 (LOC501038), mRNA.					
Rattus norvegicus	RefSeq	GI_12621087-S	ILMN_297116	CHRNA9	NM_022930.1	NM_022930.1		65024	12621087	NM_022930.1	Chrna9	NP_075219.1	ILMN_1364543	0000430593	S	1527	GCAGGAAAGAGGAGTGGGCTGGTAGGCATTTAGAGATTTGGGGAAAACCC	14	-	44906922-44906971	14p11	Rattus norvegicus cholinergic receptor, nicotinic, alpha 9 (Chrna9), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEP]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence ISS]	 [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661023-S	ILMN_52309	LOC364239	XM_344285.2	XM_344285.2		364239	62661023	XM_344285.2	LOC364239	XP_344286.2	ILMN_1371197	0005270288	S	0	ATGGTCAGCAGGGCACGAGCCATCAGGATCCGTGTCCGCCGCGGTGGTCA				15p16	PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (LOC364239), mRNA.					
Rattus norvegicus	RefSeq	GI_12018247-S	ILMN_50485	SLC5A2	NM_022590.2	NM_022590.2		64522	78486543	NM_022590.2	Slc5a2	NP_072112.2	ILMN_1355789	0000130167	S	1940	CAGCTGGGCCCGAGTAGTCAACCTCAATGCCCTGCTCATGATGACTGTGG	1	+	187529037-187529086	1q36	Rattus norvegicus solute carrier family 5 (sodium/glucose cotransporter), member 2 (Slc5a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IDA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in) [goid 5412] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in) [goid 5412] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]	Sglt2	Sglt2
Rattus norvegicus	RefSeq	GI_47575984-S	ILMN_298940	OLR1456	NM_001000956.1	NM_001000956.1		405305	47575984	NM_001000956.1	Olr1456	NP_001000956.1	ILMN_1368757	0003870452	S	764	TCAGCTACATGAGGCCCGCATCCGCCAGGTCTGCGAACCACGATAAAGTG	10	+	45016831-45016880	10q22	Rattus norvegicus olfactory receptor 1456 (Olr1456), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1456	Olr1456
Rattus norvegicus	RefSeq	GI_62652952-S	ILMN_49445	PRICKLE1	XM_235609.4	XM_235609.4		315259	109481175	XM_235609.4	Prickle1	XP_235609.2	ILMN_1375224	0006040471	S	3358	ATCCCTGAACTGCAAGGTGTTTGTTACACTGCCGTGCTCGATTTGCTAGG	7	-	131967921-131967970	7q35	PREDICTED: Rattus norvegicus prickle-like 1 (Drosophila), transcript variant 2 (Prickle1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IDA]	Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47087106-A	ILMN_270641	RDBP	NM_212548.1	NM_212548.1		294258	47087106	NM_212548.1	Rdbp	NP_997713.1	ILMN_1376695	0000670056	S	1448	AAAACAGCCCATGCTGGACGCTGCTACTGGCAAATCTGTCTGGGGCTCCC				20p12	Rattus norvegicus RD RNA-binding protein (Rdbp), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rd	Rd
Rattus norvegicus	RefSeq	GI_62648364-S	ILMN_65153	LOC307202	XM_225655.2	XM_225655.2		307202	62648364	XM_225655.2	LOC307202	XP_225655.2	ILMN_1371047	0003290497	S	2373	AATGAGAACGCCCACAAAAACACCACTGAGGGGAAGAAACCCAGGGCCTC					PREDICTED: Rattus norvegicus similar to H2A histone family, member V isoform 3 (LOC307202), mRNA.					
Rattus norvegicus	RefSeq	GI_11024671-S	ILMN_300905	KMO	NM_021593.1	NM_021593.1		59113	11024671	NM_021593.1	Kmo	NP_067604.1	ILMN_1374058	0006100273	S	1392	CTGGAACTCCTGAGATCTGCCTGGACGGGAACCTCTGGCCACTGGAATAG	13	+	91393861-91393910	13q25	Rattus norvegicus kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) (Kmo), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IDA]; The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: L-kynurenine + NADPH + H+ + O2 = 3-hydroxy-L-kynurenine + NADP+ + H2O [goid 4502] [evidence IDA]; Catalysis of the reaction: L-kynurenine + NADPH + H+ + O2 = 3-hydroxy-L-kynurenine + NADP+ + H2O [goid 4502] [evidence ISS]; Catalysis of the reaction: L-kynurenine + NADPH + H+ + O2 = 3-hydroxy-L-kynurenine + NADP+ + H2O [goid 4502] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394241-S	ILMN_263481	SCN10A	NM_017247.1	NM_017247.1		29571	8394241	NM_017247.1	Scn10a	NP_058943.1	ILMN_1362724	0004850025	S	6378	CTGCTGGTGTCGGGCAGTCTTAGAGAAGTCACGTAGGGGTTGGTACTGAG	8	-	124578301-124578350	8q32	Rattus norvegicus sodium channel, voltage-gated, type X, alpha subunit (Scn10a), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12591166] [evidence IPI]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Na(V)1.8; PN3	Na(V)1.8; PN3
Rattus norvegicus	RefSeq	GI_62664965-S	ILMN_70325	LOC364958	XM_344732.2	XM_344732.2		364958	62664965	XM_344732.2	LOC364958	XP_344733.2	ILMN_1362472	0000070035	S	131	CTGGCCTGCAAGGAAGGCAATGAGTATCAAAAGAAATGCCACTGTCGGTG				19q11	PREDICTED: Rattus norvegicus similar to ribosomal protein S11 (LOC364958), mRNA.					
Rattus norvegicus	RefSeq	GI_6978690-S	ILMN_276140	COX6A2	NM_012812.1	NM_012812.1		25278	6978690	NM_012812.1	Cox6a2	NP_036944.1	ILMN_1373354	0001170092	S	296	GACGTACTCTGCCACAGTCTCAAACTGACCTCCATACCGGCTCTAAGGGC	1	-	187464629-187464678	1q36	Rattus norvegicus cytochrome c oxidase, subunit VIa, polypeptide 2 (Cox6a2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	COX6B; COX6AH	COX6B; COX6AH
Rattus norvegicus	RefSeq	GI_62650840	ILMN_295434	WDR89	NM_001014078.1	NM_001014078.1		314243	62078888	NM_001014078.1	Wdr89	NP_001014100.1	ILMN_1650211	0006760725	S	1142	GCCACCGTGCGTTCTTTCTGTTGGACCGTGTCTGAGGACTCTTTGCTGAC	6	-	98232205-98232254	6q24	Rattus norvegicus WD repeat domain 89 (Wdr89), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]			MGC108878	MGC108878
Rattus norvegicus	RefSeq	GI_34875425-S	ILMN_267445	RGD1561197_PREDICTED	XM_001074094.1	XM_001074094.1		290392	109502786	XM_001074094.1	RGD1561197_predicted	XP_001074094.1	ILMN_1355585	0004760095	S	731	TGAAAGTGCAGCCAGAACCAGCTTATCTGCAAGAGACAGAGACCCCACAC				15q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1561197_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655068-S	ILMN_54288	LOC501145	XM_576570.1	XM_576570.1		501145	62655068	XM_576570.1	LOC501145	XP_576570.1	ILMN_1355066	0001980632	S	6018	CTAAGTGAATCTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCG				9q31	PREDICTED: Rattus norvegicus similar to KIAA1034-like DNA binding protein (LOC501145), mRNA.					
Rattus norvegicus	RefSeq	GI_62658878-S	ILMN_52992	ANAPC7_PREDICTED	XM_222171.4	XM_222171.4		304490	109495908	XM_222171.4	Anapc7_predicted	XP_222171.4	ILMN_1354823	0002510711	S	1707	GGACCCCAATGACCAGAAGTCCCTGGAGGGCATGCAGAAGATGGAGAAGG	12	-	35328383-35328432	12q16	PREDICTED: Rattus norvegicus anaphase promoting complex subunit 7 (predicted) (Anapc7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27692057-S	ILMN_161775	LOC288457	XM_221885.1	XM_221885.1			27692057	XM_221885.1	LOC288457		ILMN_2039753	0002490286	S	979	GGCCAGGATTCAGGAGACCAAAAGTGTCAGAGGAATGGGTCCTCAAATGG										
Rattus norvegicus	RefSeq	GI_40254745-S	ILMN_271326	PITX1	NM_053624.2	NM_053624.2		113983	40254745	NM_053624.2	Pitx1	NP_446076.1	ILMN_1359363	0004050132	S	2136	TGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATA	17	+	14840183-14840232	17p14	Rattus norvegicus paired-like homeodomain 1 (Pitx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure. The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. Branchiomeric muscles of mammals correspond to the gill musculature of fish [goid 14707] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence IEA]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence ISS]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a myoblast cell. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 48625] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Bft	Bft
Rattus norvegicus	RefSeq	GI_42627864-S	ILMN_300784	ESRRG	NM_203336.1	NM_203336.1		360896	42627864	NM_203336.1	Esrrg	NP_976081.1	ILMN_1356469	0001240075	S	2859	AGATTATACCTACCGTGACACCGAGTGGTCCCGTCCACGAGCACTGCACA	13	+	104404969-104405018	13q26	Rattus norvegicus estrogen-related receptor gamma (Esrrg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence ISS]	errg	errg
Rattus norvegicus	RefSeq	GI_20302031-S	ILMN_271870	TDRD7	NM_138871.1	NM_138871.1		85425	20302031	NM_138871.1	Tdrd7	NP_620226.1	ILMN_1350790	0002810736	S	3475	GGTGGCACTGGTGCAGACAGTTATTGAACATGCTAACCCTTGGGACCGGA	5	+	62573849-62573898	5q22	Rattus norvegicus tudor domain containing 7 (Tdrd7), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence ISS]; A small cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes [goid 43186] [evidence ISS]	The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IDA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]	MGC93175; Pctaire2bp	MGC93175; Pctaire2bp
Rattus norvegicus	RefSeq	GI_62078974-S	ILMN_270315	RGD1307935	NM_001014119.1	NM_001014119.1		360583	62078974	NM_001014119.1	RGD1307935	NP_001014141.1	ILMN_1349125	0000450064	S	1325	GGGGTCCCCACTGCTACAGAGTATCAGGGTCTGTCTCCTACATTTCACCA	10	-	73101550-73101599	10q26	Rattus norvegicus similar to Hypothetical protein MGC18716 (RGD1307935), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644901-S	ILMN_54798	LOC499774	XM_580013.1	XM_580013.1		499774	62644901	XM_580013.1	LOC499774	XP_580013.1	ILMN_1359262	0004920142	S	1424	CAGAAGGCCATGGGAACCTGGTGGCTCAGGGGGACTGGCAGAGGTTAAAT					PREDICTED: Rattus norvegicus LOC499774 (LOC499774), mRNA.					
Rattus norvegicus	RefSeq	GI_13242325-S	ILMN_287811	AXIN1	NM_024405.1	NM_024405.1		79257	13242325	NM_024405.1	Axin1	NP_077381.1	ILMN_1370879	0004760494	S	3104	ATTGGGCTCAGGTCCAGGAGCAGGGGATCCTGTGGGGGCCTCTGTATATT	10	+	15462437-15462486	10q12	Rattus norvegicus axin 1 (Axin1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence IEA]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IPI]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Axin	Axin
Rattus norvegicus	RefSeq	GI_56605817-S	ILMN_269528	RGD1309216	NM_001008371.1	NM_001008371.1		361726	56605817	NM_001008371.1	RGD1309216	NP_001008372.1	ILMN_1361771	0006100086	S	1530	GGGAAGAGGGGAACCAGCCTTCACTTACCTCAGAGCACTTCCACAGACAG	1	-	212984224-212984273	1q43	Rattus norvegicus similar to hypothetical protein FLJ20487 (RGD1309216), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC105864	MGC105864
Rattus norvegicus	RefSeq	GI_31343488-A	ILMN_272885	SLC14A2	NM_019347.1	NM_019347.1		54302	9507112	NM_019347.1	Slc14a2	NP_062220.1	ILMN_1376573	0000430008	S	1645	CAACCCTGGCATCCACAAGCTCCCACTCAGCAAAGTCACCTACCCAGAGG	18	-	75088233-75088245:75110047-75110083	18q12.3	Rattus norvegicus solute carrier family 14 (urea transporter), member 2 (Slc14a2), transcript variant 1, mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water [goid 9414] [evidence IEP]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence NAS]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence NAS]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence IEA]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17702749] [evidence IPI]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence IEA]	UTA3; Slc14a1_v4; UrT1-D; Slc14a1_v3; UrT1-C; UT-A4; UT-A1; UT-A2	UTA3; Slc14a1_v4; UrT1-D; Slc14a1_v3; UrT1-C; UT-A4; UT-A1; UT-A2
Rattus norvegicus	RefSeq	GI_9507112-I	ILMN_272885	SLC14A2	NM_019347.1	NM_019347.1		54302	9507112	NM_019347.1	Slc14a2	NP_062220.1	ILMN_1375909	0005550086	S	3759	GATATCTGGGAGATGCTCTAAGGCTTGGGACCGGACACCTGAATTCATTG	18	-	75071503-75071552	18q12.3	Rattus norvegicus solute carrier family 14 (urea transporter), member 2 (Slc14a2), transcript variant 1, mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water [goid 9414] [evidence IEP]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence NAS]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence NAS]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence IEA]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17702749] [evidence IPI]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence IEA]	UTA3; Slc14a1_v4; UrT1-D; Slc14a1_v3; UrT1-C; UT-A4; UT-A1; UT-A2	UTA3; Slc14a1_v4; UrT1-D; Slc14a1_v3; UrT1-C; UT-A4; UT-A1; UT-A2
Rattus norvegicus	RefSeq	GI_62659198-S	ILMN_265884	RGD1562598_PREDICTED	XR_007817.1	XR_007817.1		363962	109498434	XR_007817.1	RGD1562598_predicted		ILMN_1356481	0001990402	S	944	CAGAGATCCAAAGAGCCCTCTGAGCACCATGCAAGAATATCCAGCGCAGG				13p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L4 (L1) (predicted) (RGD1562598_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58866021-A	ILMN_298099	MGAT4A	NM_001012225.1	NM_001012225.1		367252	58866021	NM_001012225.1	Mgat4a	NP_001012225.1	ILMN_1376989	0004050711	S	165	AGGTCCAAGGCGTTCTGCCTTCTGTTGACTTGAGGCTGGAGAGAGACTGG	9	-	36473289-36473338	9q21	Rattus norvegicus mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A (Mgat4a), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + (N-acetyl-beta-D-glucosaminyl-1,2)-alpha-D-mannosyl-1,3-(beta-N-acetyl-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,4-(N-acetyl-D-glucosaminyl-1,2)-alpha-D-mannosyl-1,3-(beta-N-acetyl-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6)-beta-D-mannosyl-R [goid 8454] [evidence IEA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647499-S	ILMN_69588	LOC502785	XM_578283.1	XM_578283.1		502785	62647499	XM_578283.1	LOC502785	XP_578283.1	ILMN_1350058	0006590093	S	7	CTCAACCGTGTGACTGTCATTTCCCTAGGAAGCTCATCGAGACTCACCTG					PREDICTED: Rattus norvegicus similar to Thyrotropin receptor precursor (TSH-R) (Thyroid stimulating hormone receptor) (LOC502785), mRNA.					
Rattus norvegicus	RefSeq	GI_13592002-S	ILMN_275192	MUSK	NM_031061.1	NM_031061.1		81725	13592002	NM_031061.1	Musk	NP_112323.1	ILMN_1359905	0002260438	S	2734	CCATGCTCAAACAACACCCAGGAGGATCTTTTCAGACTGCGAGCTGGAGG	5	+	76388497-76388546	5q24	Rattus norvegicus muscle, skeletal, receptor tyrosine kinase (Musk), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IEP]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptic growth at neuromuscular junctions [goid 8582] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Nsk1	Nsk1
Rattus norvegicus	RefSeq	GI_62648918-S	ILMN_47825	LOC313245	XM_233004.3	XM_233004.3		313245	62648918	XM_233004.3	LOC313245	XP_233004.3	ILMN_1372201	0006200594	S	2122	CAGTCTGAACTTGGAACCGGAAGTTAATAAAGAGGACCTGGAGCCCAGGC				5q22	PREDICTED: Rattus norvegicus similar to RNA polymerase I associated factor (PAF53) (LOC313245), mRNA.					
Rattus norvegicus	RefSeq	GI_62640415-S	ILMN_48086	RGD1565099_PREDICTED	XM_574467.2	XM_574467.2		499171	109458862	XM_574467.2	RGD1565099_predicted	XP_574467.1	ILMN_1349150	0002120239	S	1249	GGACCGCGCCTCCTCGCCCCTTTGGTAATAGGAAAGCTGAGCGAACTTGA	1	-	118368212-118368261	1q22	PREDICTED: Rattus norvegicus similar to BTEB3 protein (predicted) (RGD1565099_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648803-S	ILMN_64624	LOC500439	XM_580066.1	XM_580066.1		500439	62648803	XM_580066.1	LOC500439	XP_580066.1	ILMN_1356774	0005130600	S	517	TCTTCAAGCAAAAGCCCTCGCTGGACAGGAACCAAGACACGCCGCATCCC					PREDICTED: Rattus norvegicus LOC500439 (LOC500439), mRNA.					
Rattus norvegicus	RefSeq	GI_62648276-S	ILMN_280240	ATF7IP_PREDICTED	XM_001070613.1	XM_001070613.1		312800	109474398	XM_001070613.1	Atf7ip_predicted	XP_001070613.1	ILMN_1351609	0006180138	S	3949	CCTCCCCTTGCCGATGGCTTGTACTCTCACGCAGTTTGTGTCTGGCAGCA				4q43	PREDICTED: Rattus norvegicus activating transcription factor 7 interacting protein (predicted) (Atf7ip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506724-S	ILMN_275020	GJA5	XM_001063632.1	XM_001063632.1		50563	109467245	XM_001063632.1	Gja5	XP_001063632.1	ILMN_1358773	0000870619	S	2678	GGTCAAACCTGGGAAGTCAGTACAGGAGGGTGAAGGTTCAGAGGTCAACC				2q34	PREDICTED: Rattus norvegicus gap junction membrane channel protein alpha 5 (Gja5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IPI]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence IEA]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62663906-S	ILMN_275999	ARMETL1	NM_001037543.1	NM_001037543.1		361276	82830400	NM_001037543.1	Armetl1	NP_001032632.1	ILMN_1362273	0002100451	S	297	CCGCCTGTGCTATTATCTAGGAGCTACCAAAGACTCGGCCACCAAGATCC	17	-	85837530-85837573:85839133-85839138	17q12.3	Rattus norvegicus arginine-rich, mutated in early stage tumors-like 1 (Armetl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47606388-S	ILMN_291207	OLR131	NM_001001285.1	NM_001001285.1		405071	47606388	NM_001001285.1	Olr131	NP_001001285.1	ILMN_1355991	0006840369	S	252	GGTGAATCACAGAGAGATAAGACACGGGGCCTGCTTTTTACAGGCCTATG	1	-	161697865-161697914	1q32	Rattus norvegicus olfactory receptor 131 (Olr131), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr131	Olr131
Rattus norvegicus	RefSeq	GI_62656556-S	ILMN_55863	SLC43A2_PREDICTED	XM_213381.4	XM_213381.4		287532	109488546	XM_213381.4	Slc43a2_predicted	XP_213381.4	ILMN_1371470	0000730095	S	1692	GCATGCTGGGTTTCTGCCTGCCACTTTACCTGATTTGCTACCGGCGCCAG	10	+	62891969-62892018	10q24	PREDICTED: Rattus norvegicus solute carrier family 43, member 2 (predicted) (Slc43a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641688-S	ILMN_262593	TCIRG1	NM_199089.2	NM_199089.2		293650	86477161	NM_199089.2	Tcirg1	NP_954520.2	ILMN_1351254	0004810333	S	2294	GCATGGGCCGAGAGATTGGTGTGGCATCTGTGGTGCTGGTCCCTGTGTTT	1	-	206420349-206420398	1q42	Rattus norvegicus T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 (Tcirg1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence NAS]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence NAS]	MGC72583; OC116; TIRC7	MGC72583; OC116; TIRC7
Rattus norvegicus	RefSeq	GI_47575960-S	ILMN_264277	OLR1501	NM_001000715.1	NM_001000715.1		404967	47575960	NM_001000715.1	Olr1501	NP_001000715.1	ILMN_1358830	0006770546	S	712	TTCACCACTTGTGGTTCTCACCTATCTGTGGTGTCACTGTTCTATGGCAC	10	+	61162119-61162168	10q24	Rattus norvegicus olfactory receptor 1501 (Olr1501), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1501	Olr1501
Rattus norvegicus	RefSeq	GI_62642843-S	ILMN_63806	RGD1565370_PREDICTED	XM_212922.4	XM_212922.4		294700	109464330	XM_212922.4	RGD1565370_predicted	XP_212922.1	ILMN_1362932	0005720064	S	465	AGGACTAACGGAAAGGAGCCTGAGCGGCTGGAGCCCAGTCCATACGGATT	2	+	32221728-32221777	2q12	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1565370_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648783-S	ILMN_268931	SLC35A1_PREDICTED	XM_001065151.1	XM_001065151.1		313139	109476313	XM_001065151.1	Slc35a1_predicted	XP_001065151.1	ILMN_1356217	0004070450	S	1006	CGGCCGCAGCCATTGTTCTGTCTACCGTTGCCTCAGTCATACTGTTTGGA				5q21	PREDICTED: Rattus norvegicus solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) (Slc35a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649102-S	ILMN_295779	RGD1560180_PREDICTED	XR_008212.1	XR_008212.1		366383	109476617	XR_008212.1	RGD1560180_predicted		ILMN_1361858	0002680577	S	515	CTGTGGCTCTCATCCCTGCAATAAGCTGGCCATGGAAGAGGTCATGATCC				5q24	PREDICTED: Rattus norvegicus similar to enolase 1, alpha non-neuron (predicted) (RGD1560180_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660055	ILMN_67175	LOC307681	XM_226288.3	XM_226288.3		307681	62660055	XM_226288.3	LOC307681	XP_226288.3	ILMN_1649731	0002480692	S	885	GGGGTCATGTGATGGTTGGAAGCACCTTTGTCCAAAGGATATATCCACAG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC307681), mRNA.					
Rattus norvegicus	RefSeq	GI_62660263-A	ILMN_279989	RGD1560675_PREDICTED	XM_001074782.1	XM_001074782.1		498345	109500505	XM_001074782.1	RGD1560675_predicted	XP_001074782.1	ILMN_1376420	0002450427	S	363	CCCACCAGGGGAAGGGGTCGTTGTTACAGGATGGGGATCACTTTCTTACA				14p21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732406D01 gene (predicted) (RGD1560675_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660319-S	ILMN_279989	RGD1560675_PREDICTED	XM_001074782.1	XM_001074782.1		498345	109500505	XM_001074782.1	RGD1560675_predicted	XP_001074782.1	ILMN_1355046	0004010369	S	1921	GGGCCAACACAAAATAAACTCCGGCAGGCCAGGGTGGAGACCATAGGCTC				14p21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732406D01 gene (predicted) (RGD1560675_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639211-S	ILMN_284693	MGC108974	NM_001017513.1	NM_001017513.1		499108	62945381	NM_001017513.1	MGC108974	NP_001017513.1	ILMN_1362310	0006760576	S	970	GGGTCTCAGGGAAGATAAAAAAGGGTGATGGGTGGGCTGCCTCTCCAGGG	1	+	82557200-82557249	1q21	Rattus norvegicus similar to replication protein-binding trans-activator RBT1 (MGC108974), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078678-S	ILMN_288232	RGD1307119	NM_001013975.1	NM_001013975.1		303743	62078678	NM_001013975.1	RGD1307119	NP_001013997.1	ILMN_1364435	0006420093	S	1624	AGGCCAGCTTAGGGGCAAGCCGGAAGCAAAGCCAAGCACTGGATTCCTGA	10	-	110047221-110047270	10q32.3	Rattus norvegicus hypothetical LOC303743 (RGD1307119), mRNA.				MGC109547	MGC109547
Rattus norvegicus	RefSeq	GI_62656418-S	ILMN_65518	LOC363596	XM_577091.1	XM_577091.1		363596	62656418	XM_577091.1	LOC363596	XP_577091.1	ILMN_1365860	0004480685	S	854	TGCTCTGCTGAGACAACTTGTTCGGATTGGGACCCAGGTCTTTGAGCTGG					PREDICTED: Rattus norvegicus similar to ribosomal protein S9 (LOC363596), mRNA.					
Rattus norvegicus	RefSeq	GI_62656641-S	ILMN_60912	ZFP207_PREDICTED	XM_221231.3	XM_221231.3		303763	62656641	XM_221231.3	Zfp207_predicted	XP_221231.2	ILMN_1366749	0006020687	S	2244	ACCCAGCTGTGGACCACTGCCTGAAAGGTTTGTACAGATGCATGCCACAG				10q26	PREDICTED: Rattus norvegicus zinc finger protein 207 (predicted) (Zfp207_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652623-S	ILMN_55551	LOC500894	XM_576296.1	XM_576296.1		500894	62652623	XM_576296.1	LOC500894	XP_576296.1	ILMN_1366711	0004610471	S	1494	CGCTGAGCGAGACCTCCGTTCATTTAGGAGAGACAGCTACAGATCAGGAG					PREDICTED: Rattus norvegicus similar to Zinc finger CCCH type domain containing 3 (LOC500894), mRNA.					
Rattus norvegicus	RefSeq	GI_12621089-S	ILMN_290413	RIMS3	NM_022931.1	NM_022931.1		65025	12621089	NM_022931.1	Rims3	NP_075220.1	ILMN_2040625	0005220202	S	1407	AAGGGAGCCTGCTGGACCCACCACCCCCTGTACATAGTCTCCATGACCTT	5	+	141477147-141477196	5q36	Rattus norvegicus regulating synaptic membrane exocytosis 3 (Rims3), mRNA.	A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence IDA]		Nim2; Nim3	Nim2; Nim3
Rattus norvegicus	RefSeq	GI_62649257-S	ILMN_271253	RGD1560981_PREDICTED	XM_001058570.1	XM_001058570.1		313372	109476791	XM_001058570.1	RGD1560981_predicted	XP_001058570.1	ILMN_1355785	0005290026	S	973	GTCCCTCTGAATGTTCCCAGAGAAGTGGCTGTTGATACTACACTGGCTGG				5q33	PREDICTED: Rattus norvegicus similar to cytochrome P450, family 2, subfamily J, polypeptide 4 (predicted) (RGD1560981_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645601-S	ILMN_280383	RGD1563603_PREDICTED	XM_001075212.1	XM_001075212.1		499870	109470458	XM_001075212.1	RGD1563603_predicted	XP_001075212.1	ILMN_1348835	0000540170	S	779	GGTTCAACACAGACCACCAGACCCAGCTCCTTTACCAAGCGTCAGCCATG				3q35	PREDICTED: Rattus norvegicus similar to DNA repair protein RAD51 homolog 1 (predicted) (RGD1563603_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650222-S	ILMN_48711	LOC313824	XM_233790.4	XM_233790.4		313824	109475954	XM_233790.4	LOC313824	XP_233790.4	ILMN_1359369	0004730176	S	1103	CATGTGATATGATGGCGCCCCACCCTGAGCTTGTGAAACACGTGAGCCTG	5|NW_047748.1	+	14212-14261		PREDICTED: Rattus norvegicus hypothetical LOC313824 (LOC313824), mRNA.					
Rattus norvegicus	RefSeq	GI_62643774-S	ILMN_64258	RGD1306107_PREDICTED	XM_227412.4	XM_227412.4		310640	109465048	XM_227412.4	RGD1306107_predicted	XP_227412.3	ILMN_1355799	0002650739	S	2789	AGCTTCTGTCCTGTGCTGCATGGGTGTTCAAGTTGTGGGAGCAAATGCCC	2	+	181269645-181269694	2q34	PREDICTED: Rattus norvegicus similar to chromosome 1 open reading frame 2 (predicted) (RGD1306107_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663757-S	ILMN_67003	LOC364763	XM_344621.2	XM_344621.2		364763	62663757	XM_344621.2	LOC364763	XP_344622.2	ILMN_1374122	0000610593	S	1260	GATGTTTCTGGTCTTCGGGATGTCAAGGCCCACTATGCAGTCCAGGCCAG					PREDICTED: Rattus norvegicus similar to GTP-binding protein NGB (LOC364763), mRNA.					
Rattus norvegicus	RefSeq	GI_22024391-A	ILMN_264840	KIF1C	NM_145877.1	NM_145877.1		113886	22024391	NM_145877.1	Kif1c	NP_665884.1	ILMN_1376766	0006760687	S	3761	GGAAGAACCATAGGAAGTTGTCTTGGGGCTACCCGTTTCAGGGGGGAGTC	10	+	57622250-57622299	10q24	Rattus norvegicus kinesin family member 1C (Kif1c), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence TAS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence TAS]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence IEA]; Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence TAS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence TAS]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865767-A	ILMN_270979	XKR8	NM_001012099.1	NM_001012099.1		313033	58865767	NM_001012099.1	Xkr8	NP_001012099.1	ILMN_1376634	0001570576	S	2492	CGTTCAGGCTCTTAGGCCACCTTACACCAAGTGCCTTATGGACCTGTGGC	5	+	152422547-152422596	5q36	Rattus norvegicus X Kell blood group precursor related family member 8 homolog (Xkr8), mRNA.				XRG8; MGC124905; RGD1305649	XRG8; MGC124905; RGD1305649
Rattus norvegicus	RefSeq	GI_62643941-S	ILMN_49917	LOC295167	XM_227324.3	XM_227324.3		295167	62643941	XM_227324.3	LOC295167	XP_227324.3	ILMN_1365374	0005670594	S	588	TGCAGTCCAACAACAGGGGAGCTGAGACTGGACCTAATGCTACAGGCATG					PREDICTED: Rattus norvegicus similar to CG13990-PA (LOC295167), mRNA.					
Rattus norvegicus	RefSeq	GI_62657932-S	ILMN_61811	RABL3_PREDICTED	XM_340992.2	XM_340992.2		360720	62657932	XM_340992.2	Rabl3_predicted	XP_340993.2	ILMN_1372195	0004780128	S	1710	TATGAGCCGGGTTCGAGAGTTCACAGTCACACCACAGCTTTTGCTGGTGG				11q21	PREDICTED: Rattus norvegicus RAB, member of RAS oncogene family-like 3 (predicted) (Rabl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653713-S	ILMN_264924	HMG20A_PREDICTED	XM_001073808.1	XM_001073808.1		315689	109484760	XM_001073808.1	Hmg20a_predicted	XP_001073808.1	ILMN_1368954	0002450397	S	1371	GCCAGCCCTTCAGTCCTCAGACCACAACGACTGCTAAATCCTGGAACTGC				8q24	PREDICTED: Rattus norvegicus high mobility group 20A (predicted) (Hmg20a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650589-S	ILMN_67245	RGD1564242_PREDICTED	XM_234056.4	XM_234056.4		314033	109478123	XM_234056.4	RGD1564242_predicted	XP_234056.4	ILMN_1368961	0006900364	S	2240	GCTTGGCCAGGTGGCTCAGACAGGCAACACAAGCATGTCTCCTTTTTCCG	6	+	51709357-51709406	6q16	PREDICTED: Rattus norvegicus similar to KIAA1218 protein (predicted) (RGD1564242_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11120707-S	ILMN_284145	LIN7B	NM_021758.1	NM_021758.1		60377	11120707	NM_021758.1	Lin7b	NP_068526.1	ILMN_1356918	0002230465	S	440	GTGTGGAAGGCGAACACCATGAAAAGGCAGTGGAACTCCTGAAGGCCGCC	1	-	95839218-95839267	1q22	Rattus norvegicus lin-7 homolog b (C. elegans) (Lin7b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IPI]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a junction between cells [goid 7043] [evidence NAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Veli2; Veli1a	Veli2; Veli1a
Rattus norvegicus	RefSeq	GI_62647507-S	ILMN_69936	LOC502789	XM_578288.1	XM_578288.1		502789	62647507	XM_578288.1	LOC502789	XP_578288.1	ILMN_1368043	0002690035	S	161	GGCAGATGGGATCCCATCAAGGTTCAGTGGCAGTAGGTCTGGGTCAGATC					PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC502789), mRNA.					
Rattus norvegicus	RefSeq	GI_62655071-S	ILMN_279147	RGD1311269_PREDICTED	XM_001067847.1	XM_001067847.1		301419	109487192	XM_001067847.1	RGD1311269_predicted	XP_001067847.1	ILMN_1369058	0003120528	S	849	GAAAACACTGGCTGAGTTACCAGAGGAATACAGGGACTTCTATGCGCGCC				9q31	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ37953 (predicted) (RGD1311269_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46195818-S	ILMN_292807	IGBP1	NM_031624.2	NM_031624.2		58845	46195818	NM_031624.2	Igbp1	NP_113812.1	ILMN_1354695	0003850093	S	1078	TCACACCAAGGACAACTTCAGGAGGGTGCAGTGAGGGCAGCCATGTGGAG				Xq31	Rattus norvegicus immunoglobulin (CD79A) binding protein 1 (Igbp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism [goid 9607] [evidence IEA]; Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]	Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645312-S	ILMN_52699	ZFP533_PREDICTED	XM_230026.4	XM_230026.4		311137	109468341	XM_230026.4	Zfp533_predicted	XP_230026.4	ILMN_1364439	0005360707	S	2667	CGGTAACGATGCTACATAACTCTGTGGCTCCCTGACGCAATAATGTACAG	3	-	60099310-60099359	3q23	PREDICTED: Rattus norvegicus zinc finger protein 533 (predicted) (Zfp533_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018291	ILMN_55035	INHBC	NM_022614.2	NM_022614.2		64549	59709462	NM_022614.2	Inhbc	NP_072136.1	ILMN_1650726	0003190161	S	797	GAGGTATCAACTGCCAGGGGCTGTCCAGGATGTGCTGTCGGCAAGAGTTC	7	-	67316430-67316479	7q22	Rattus norvegicus inhibin beta C (Inhbc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	MGC108687	MGC108687
Rattus norvegicus	RefSeq	GI_62665884-S	ILMN_47866	RTDR1_PREDICTED	XM_345095.2	XM_345095.2		365552	62665884	XM_345095.2	Rtdr1_predicted	XP_345096.2	ILMN_1372380	0002360072	S	551	CCAGGACTGTGTGGCAAGTGCTTTTACCTGCAGACCCATCTCACTGGCCC					PREDICTED: Rattus norvegicus rhabdoid tumor deletion region gene 1 (predicted) (Rtdr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652305-S	ILMN_62774	RGD1562404_PREDICTED	XM_234780.3	XM_234780.3		314556	109480691	XM_234780.3	RGD1562404_predicted	XP_234780.1	ILMN_1350699	0004780195	S	404	ATAGGGGGCTGCGCCACTTTTGGGACCTTCGTGTCGGCGGTCAGCACTCC	7	+	69341839-69341888	7q22	PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (predicted) (RGD1562404_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928939-S	ILMN_302806	FHL2	NM_031677.1	NM_031677.1		63839	13928939	NM_031677.1	Fhl2	NP_113865.1	ILMN_1372988	0003610279	S	562	TGCACAGCCTGCAAGAAGCAGCTATCTGGGCAACGCTTCACAGCCCGGGA	9	-	42324046-42324095	9q22	Rattus norvegicus four and a half LIM domains 2 (Fhl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines [goid 31430] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394099-S	ILMN_293605	PTH	NM_017044.1	NM_017044.1		24694	8394099	NM_017044.1	Pth	NP_058740.1	ILMN_1369354	0006660253	S	334	GGCTGCCAGAGAAGGCAGTTACCAGAGGCCCACCAAGAAGGAGGAAAATG	1	-	171240916-171240965	1q34	Rattus norvegicus parathyroid hormone (Pth), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence TAS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]; Interacting selectively with a parathyroid hormone receptor [goid 31856] [evidence IDA]	PTH-(1-84); Pth1; Pthr1	PTH-(1-84); Pth1; Pthr1
Rattus norvegicus	RefSeq	GI_24638441-S	ILMN_269179	RLN3	NM_170667.1	NM_170667.1		266997	24638441	NM_170667.1	Rln3	NP_733767.1	ILMN_1357801	0001240324	S	648	TTATGGCTGAGATTTTCCTCGCTCCAACCATACCCCTAGCAGCCCGGCAG	19	+	25794992-25795041	19q11	Rattus norvegicus relaxin 3 (Rln3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IMP]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Insl7	Insl7
Rattus norvegicus	RefSeq	GI_62078774-S	ILMN_282360	BTBD10	NM_001014022.1	NM_001014022.1		308890	62078774	NM_001014022.1	Btbd10	NP_001014044.1	ILMN_1354939	0007040142	S	2085	CACATGCAGGGAGGGTGAACGTCAAGAGGTGGTTTACTGTCCAGTCTGCC	1	-	171163662-171163711	1q34	Rattus norvegicus BTB (POZ) domain containing 10 (Btbd10), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1306301; MGC105916	RGD1306301; MGC105916
Rattus norvegicus	RefSeq	GI_62667528-S	ILMN_67370	LOC293840	XM_219736.2	XM_219736.2		293840	62667528	XM_219736.2	LOC293840	XP_219736.2	ILMN_1359267	0006770528	S	2291	ATACCAAACGCGTGGACGTTCCAGAAGAGGCCATCTCGAGGGTTCTGCCT				Xq37	PREDICTED: Rattus norvegicus similar to Paraneoplastic antigen MA3 (LOC293840), mRNA.					
Rattus norvegicus	RefSeq	GI_62650800-S	ILMN_272976	RGD1305721_PREDICTED	XM_001080576.1	XM_001080576.1		314214	109479499	XM_001080576.1	RGD1305721_predicted	XP_001080576.1	ILMN_1354218	0002230471	S	1156	CGGGGACAGCAAACCTGACAGTGGAAGACGATGACCCACTAAGGGATGGC				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810055F11 (predicted) (RGD1305721_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978818-S	ILMN_299014	ETS1	NM_012555.1	NM_012555.1		24356	6978818	NM_012555.1	Ets1	NP_036687.1	ILMN_1358164	0000380270	S	4300	GAGCTCTGACCGTTGCGCCATGGAAACCAGTGGAAGCACTCTAGATCAGA	8	+	32544527-32544576	8q21	Rattus norvegicus v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) (Ets1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Etsoncb; MGC124638; Tpl1; Ets-1	Etsoncb; MGC124638; Tpl1; Ets-1
Rattus norvegicus	RefSeq	GI_62648715-S	ILMN_302055	WWP1	NM_001024757.1	NM_001024757.1		297930	67078497	NM_001024757.1	Wwp1	NP_001019928.1	ILMN_1357974	0003850601	S	921	CCAGACCCCAAAATACTCCAGCTCCAAAACCACTCACGTCTGAGCCCACC	5	-	34279331-34279380	5q13	Rattus norvegicus WW domain containing E3 ubiquitin protein ligase 1 (Wwp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648713-S	ILMN_302055	WWP1	NM_001024757.1	NM_001024757.1		297930	67078497	NM_001024757.1	Wwp1	NP_001019928.1	ILMN_1375155	0003390167	S	2771	CGAATGCGACTCCTGCAGTTCGTCACTGGAACCTGTCGCTTGCCTCTAGG	5	-	34244720-34244769	5q13	Rattus norvegicus WW domain containing E3 ubiquitin protein ligase 1 (Wwp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665136-S	ILMN_291269	LOC498940	XM_001071586.1	XM_001071586.1		498940	109508647	XM_001071586.1	LOC498940	XP_001071586.1	ILMN_1373946	0006020397	S	1351	CAACATCGGCCCAGTTTCTTCAAGGACTCCAAGCCACCCCATGTGAAGGC				19q11	PREDICTED: Rattus norvegicus similar to Carboxylesterase 2 (LOC498940), mRNA.					
Rattus norvegicus	RefSeq	GI_62641402-S	ILMN_289201	RGD1560958_PREDICTED	XM_001053492.1	XM_001053492.1		499277	109463022	XM_001053492.1	RGD1560958_predicted	XP_001053492.1	ILMN_1350477	0000770093	S	281	GAACTGCCAGCCCCTCCAGTGTTTCAGTGCATGTGGCACGTATGAAGGCG				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700063I17 (predicted) (RGD1560958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980949-S	ILMN_277826	GLRA1	NM_013133.1	NM_013133.1		25674	6980949	NM_013133.1	Glra1	NP_037265.1	ILMN_1362530	0001400678	S	1760	GGGGTGGGACAGGGGTCAGGGAGGGGATTGGGAAAATCACAGCTTTCAAA	10	-	40923182-40923231	10q22	Rattus norvegicus glycine receptor, alpha 1 subunit (Glra1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [pmid 17145751] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [pmid 17145751] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [pmid 2155780] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [pmid 17145751] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence ISS]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence ISS]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51970] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51970] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence IEA]; A reflex process in which an animal immediately tries to turn over after being placed in a supine position [goid 60013] [evidence ISS]; A reflex process in which an animal immediately tries to turn over after being placed in a supine position [goid 60013] [evidence IEA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51970] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence IEA]; A reflex process in which an animal immediately tries to turn over after being placed in a supine position [goid 60013] [evidence IEA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [pmid 2155780] [evidence ISS]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [pmid 2155780] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [pmid 2155780] [evidence ISS]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [pmid 2155780] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [pmid 2155780] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51970] [pmid 2155780] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence IEA]; A reflex process in which an animal immediately tries to turn over after being placed in a supine position [goid 60013] [evidence IEA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IDA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16933] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence ISS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence ISS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with taurine [goid 30977] [evidence ISS]; Interacting selectively with taurine [goid 30977] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IEA]; Interacting selectively with taurine [goid 30977] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 2155780] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [pmid 2155780] [evidence ISS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [pmid 2155780] [evidence ISS]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with taurine [goid 30977] [pmid 2155780] [evidence ISS]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	GLYRA1	GLYRA1
Rattus norvegicus	RefSeq	GI_34880639-S	ILMN_291625	RGD1563079_PREDICTED	XM_001061018.1	XM_001061018.1		302742	109511866	XM_001061018.1	RGD1563079_predicted	XP_001061018.1	ILMN_1356054	0006760670	S	269	ACTGGATGGTGGTGGAGGTGGCCAAAGTTGCTAGGAAGATGTGGTCCGTA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1563079_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662114-S	ILMN_283381	SPERT	NM_001017506.1	NM_001017506.1		498572	62945363	NM_001017506.1	Spert	NP_001017506.1	ILMN_1363406	0006520180	S	1486	GTGCCTGTGGGACAGCGGAGAAAGGGCCATCATCCACCCGAGACACAATA	15|NW_047466.1	+	398480-398529		Rattus norvegicus spermatid associated (Spert), mRNA.	A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_47576942-S	ILMN_269259	OLR24	NM_001000693.1	NM_001000693.1		404898	47576942	NM_001000693.1	Olr24	NP_001000693.1	ILMN_1370053	0003170451	S	885	CAAGTGTGCTTTGAGGAGGTTGCAAAACAATCTTTTCCCAAGGAGTTCAC	1	-	142710369-142710418	1q32	Rattus norvegicus olfactory receptor 24 (Olr24), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Olr24	Olr24
Rattus norvegicus	RefSeq	GI_33563367-S	ILMN_299699	SLC12A3	NM_019345.2	NM_019345.2		54300	33563367	NM_019345.2	Slc12a3	NP_062218.2	ILMN_1354820	0005340324	S	3816	ACATAGGCATGTTTCACGAGGTGATAGGGACCACACCTACGGTTGATGGG	19	-	11070822-11070871	19p12	Rattus norvegicus solute carrier family 12, member 3 (Slc12a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IMP]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + Cl-(out) = Na+(in) + Cl-(in) [goid 15378] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + Cl-(out) = Na+(in) + Cl-(in) [goid 15378] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	NCC; TSC	NCC; TSC
Rattus norvegicus	RefSeq	GI_27672602-S	ILMN_58773	CAR15_PREDICTED	XM_221762.2	XM_221762.2		288360	109493590	XM_221762.2	Car15_predicted	XP_221762.2	ILMN_1365805	0001990019	S	728	CGCTGGCCTCTCTGCTGCCAAGTGCTTTGGGACTTTTGCGCTACTACCGA	11	+	85137906-85137955	11q23	PREDICTED: Rattus norvegicus carbonic anhydrase 15 (predicted) (Car15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642891-S	ILMN_282921	IPO11_PREDICTED	XM_226752.3	XM_226752.3		310056	62642891	XM_226752.3	Ipo11_predicted	XP_226752.3	ILMN_1374164	0001090538	S	1415	AGGATCAGTGGGGAAGAGAGGCCAATGGGGAGGCACTCCAGCATGATTGG	2	-	38006436-38006485	2q14	PREDICTED: Rattus norvegicus importin 11 (predicted) (Ipo11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651826	ILMN_278485	RGD1564794_PREDICTED	XR_009276.1	XR_009276.1		500806	109481703	XR_009276.1	RGD1564794_predicted		ILMN_1650762	0005550059	S	406	GACAAGCAGCCCTATGAGAAGATGGCCGCCAAGCTGAAGAAGTATAAGGA				7q12	PREDICTED: Rattus norvegicus similar to high mobility group protein (predicted) (RGD1564794_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17865342-S	ILMN_266619	OLFM1	NM_053573.1	NM_053573.1		93667	17865342	NM_053573.1	Olfm1	NP_446025.1	ILMN_1358934	0005550253	S	2343	ACTTGCGTACCCTGTAGCTAGATCGTGAGGTGTCCGTCTGTTATCCCCCC	3	+	7194929-7194978	3p12	Rattus norvegicus olfactomedin 1 (Olfm1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	D2Sut1e; Noe1	D2Sut1e; Noe1
Rattus norvegicus	RefSeq	GI_62657452-S	ILMN_65872	LOC497675	XM_579686.1	XM_579686.1		497675	62657452	XM_579686.1	LOC497675	XP_579686.1	ILMN_1364960	0005050348	S	4166	CCCAGGCCCTAGAGGCTGAGAGCTCACTTGAATCGTAAGCCTTCTTGCTT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_153735 (LOC497675), mRNA.					
Rattus norvegicus	RefSeq	GI_62644496-S	ILMN_272002	PKN2	XM_001076809.1	XM_001076809.1		207122	109467649	XM_001076809.1	Pkn2	XP_001076809.1	ILMN_1362697	0000110671	S	3357	GAGAACAGCAGCCTTTCATTTGCTTTCCGTGCCCAGGAGCTTTTGAGGCC				2q44	PREDICTED: Rattus norvegicus protein kinase N2 (Pkn2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663735-S	ILMN_65720	LOC498780	XM_574066.1	XM_574066.1		498780	62663735	XM_574066.1	LOC498780	XP_574066.1	ILMN_1365573	0003140131	S	2160	GGGACTCACCTGGACTAAAATCCATTATTCTTTATGCAGTCCAGGCAGCC				17q12.1	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC498780), mRNA.					
Rattus norvegicus	RefSeq	GI_62649433-S	ILMN_51442	FOXD2_PREDICTED	XM_233422.3	XM_233422.3		313504	62649433	XM_233422.3	Foxd2_predicted	XP_233422.3	ILMN_1368560	0002940711	S	3101	ATGAGATTGGGTGGGAGAAGAGGGTCTGGAGAGGTGGGAATTGGGTGGGC				5q36	PREDICTED: Rattus norvegicus forkhead box D2 (predicted) (Foxd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643481-S	ILMN_49760	LOC295062	XM_215579.3	XM_215579.3		295062	62643481	XM_215579.3	LOC295062	XP_215579.3	ILMN_1366715	0005340279	S	1788	GACCTCAGGCAGTGAATTCTGATAGGCAGCTTGGTCCAGGAAGTGTGCAC				2q31	PREDICTED: Rattus norvegicus similar to WW domain containing transcription regulator 1 (LOC295062), mRNA.					
Rattus norvegicus	RefSeq	GI_62647201-S	ILMN_278455	RGD1306967_PREDICTED	XM_001053983.1	XM_001053983.1		362358	109473449	XM_001053983.1	RGD1306967_predicted	XP_001053983.1	ILMN_1368298	0003120504	S	3338	GCTGCTAGAGGGGCAGCAGTCAGCATTCCAAACCAGCCCAAGGACCCTAA				4q24	PREDICTED: Rattus norvegicus similar to KIAA1862 protein (predicted) (RGD1306967_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717813-S	ILMN_49508	LOC503290	XM_229456.3	XM_229456.3		503290	62717813	XM_229456.3	LOC503290	XP_229456.3	ILMN_1363197	0001940736	S	171	AACCATGCTGCAGCCCTGGAGATCTCACCTGGTAACTGGGCATCCTACCG					PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC503290), mRNA.					
Rattus norvegicus	RefSeq	GI_34877861-S	ILMN_283347	RGD1563284_PREDICTED	XR_008894.1	XR_008894.1		290691	109504064	XR_008894.1	RGD1563284_predicted		ILMN_1359112	0001240673	S	430	GCACCCAGCACAGTGAAGATTAAGATTATTCCGACCCCACCCTCCAGAGC				16p13	PREDICTED: Rattus norvegicus similar to actin (predicted) (RGD1563284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649319-S	ILMN_277990	RGD1564074_PREDICTED	XM_001064051.1	XM_001064051.1		500514	109476867	XM_001064051.1	RGD1564074_predicted	XP_001064051.1	ILMN_1371568	0002120138	S	2091	TCTGCCAATAACTCCTGGAGAGCAGCTGGAGGTCATCGACACCACTGAGC				5q34	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1564074_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653442-S	ILMN_279140	ADAMTS8_PREDICTED	XM_001055774.1	XM_001055774.1		300475	109484450	XM_001055774.1	Adamts8_predicted	XP_001055774.1	ILMN_1350348	0006590368	S	2949	CTCTGAAACCTGAGGATGCCAAGCCCTGTGGAAGCCAGCCATGTCTCCTC				8q13	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8 (predicted) (Adamts8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662850-S	ILMN_50927	LOC498655	XM_573937.1	XM_573937.1		498655	62662850	XM_573937.1	LOC498655	XP_573937.1	ILMN_1354459	0006110180	S	2082	GGAAATTCCCACTCGCGTTTCCAAGGCAGAGCTGAAGTGCCTACTGCTCG					PREDICTED: Rattus norvegicus similar to FLJ13842 protein (LOC498655), mRNA.					
Rattus norvegicus	RefSeq	GI_16758863-S	ILMN_302241	RPL6	NM_053971.1	NM_053971.1		117042	16758863	NM_053971.1	Rpl6	NP_446423.1	ILMN_1368359	0000130491	S	594	GAGTTCCTCTGCGTAGGACACACCAGAAGTTTGTCATCGCCACCTCTACG	12	-	36484405-36484454	12q16	Rattus norvegicus ribosomal protein L6 (Rpl6), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC93267	MGC93267
Rattus norvegicus	RefSeq	GI_62654371-S	ILMN_285570	RGD1309180_PREDICTED	XR_009057.1	XR_009057.1		367174	109485487	XR_009057.1	RGD1309180_predicted		ILMN_1359092	0003060121	S	1041	GGACAACGACAGGGAAAAGTTCTGCTATGAGAGGTCTGGTGAGCCCCTGG				8q32	PREDICTED: Rattus norvegicus similar to testes-specific protease 50 (predicted) (RGD1309180_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978592-S	ILMN_290003	CAMK2A	NM_012920.1	NM_012920.1		25400	6978592	NM_012920.1	Camk2a	NP_037052.1	ILMN_1359245	0002810309	S	1152	AAGATGTGCGACCCTGGAATGACAGCCTTTGAACCGGAGGCCCTGGGGAA				18q12.1	Rattus norvegicus calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha (Camk2a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [evidence TAS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a glutamate receptor [goid 35254] [evidence ISS]	PKCCD; PK2CDD	PKCCD; PK2CDD
Rattus norvegicus	RefSeq	GI_6978824-S	ILMN_292652	FABP1	NM_012556.1	NM_012556.1		24360	6978824	NM_012556.1	Fabp1	NP_036688.1	ILMN_1374405	0003780037	S	250	CTGGAGACCATGACTGGGGAAAAGGTCAAGGCAGTGGTTAAGATGGAGGG	4	+	104413903-104413933:104415158-104415176	4q32	Rattus norvegicus fatty acid binding protein 1, liver (Fabp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The region that lies just beneath the plasma membrane on the apical edge of a cell [goid 45179] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEP]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of fatty acid beta-oxidation [goid 32000] [evidence IDA]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51345] [evidence IDA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of long-chain fatty acids into, out of, within or between cells. Long-chain fatty acids have a chain length of greater than 12 carbons [goid 5324] [evidence IMP]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IPI]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IPI]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IMP]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IPI]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 32052] [evidence IMP]; Enables the directed movement of lysophospholipids into, out of, within or between cells. A lysophospholipid is a phospholipid that lacks one of its fatty acyl chains; it is an intermediate formed during digestion of dietary and biliary phospholipids [goid 51978] [evidence IC ]	MGC108756; Fabplg; RATFABPLG	MGC108756; Fabplg; RATFABPLG
Rattus norvegicus	RefSeq	GI_61557211-S	ILMN_299230	NARFL	NM_001013183.1	NM_001013183.1		360496	61557211	NM_001013183.1	Narfl	NP_001013201.1	ILMN_1352324	0007000035	S	1657	CCTCCAGGGTCCACACTGAGATATGCAAGGTGAAGTGCAGGCAGGATCAG	10	+	15050022-15050071	10q12	Rattus norvegicus nuclear prelamin A recognition factor-like (Narfl), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A homeostatic process involved in the maintenance of an internal equilibrium of oxygen within an organism or cell [goid 32364] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]		MGC109005	MGC109005
Rattus norvegicus	RefSeq	GI_62647578-S	ILMN_50268	LOC502828	XM_578328.1	XM_578328.1		502828	62647578	XM_578328.1	LOC502828	XP_578328.1	ILMN_1365819	0003710711	S	691	GCTGCACAGGCAGTCAGAATGTGGGCAGTGGATCTGGGATCACCATCAGC					PREDICTED: Rattus norvegicus similar to Ig kappa chain V-V region MPC11 precursor (LOC502828), mRNA.					
Rattus norvegicus	RefSeq	GI_47576948-S	ILMN_263319	OLR796	NM_001000600.1	NM_001000600.1		404788	47576948	NM_001000600.1	Olr796	NP_001000600.1	ILMN_2039428	0003830221	S	203	TCATTGACCTAGGTGTTTCTTCTGCCACTTCCCCCAAGATGATTTCTGAC	3	+	98014405-98014454	3q34	Rattus norvegicus olfactory receptor 796 (Olr796), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr796	Olr796
Rattus norvegicus	RefSeq	GI_56799389-S	ILMN_277898	ATP1B2	NM_012507.2	NM_012507.2		24214	56799389	NM_012507.2	Atp1b2	NP_036639.2	ILMN_1366084	0000450195	S	2666	AGAGCCGCCTGTACCAAGTTTTCTTCCACCATAGCTGCGTTTTCCTCTGG	10	-	56418463-56418512	10q24	Rattus norvegicus ATPase, Na+/K+ transporting, beta 2 polypeptide (Atp1b2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]	Amog; MGC93648; ATPB2S; ATPB2; RATATPB2S	Amog; MGC93648; ATPB2S; ATPB2; RATATPB2S
Rattus norvegicus	RefSeq	GI_31342032-S	ILMN_301620	LHFPL1	NM_181085.2	NM_181085.2		300286	31342032	NM_181085.2	Lhfpl1	NP_851599.1	ILMN_1357108	0002570053	S	876	AGGAACCTGTAGACTTGGCTGGGCCTATTACTGTGCTGGTGGCGGAGCTG	X	+	33182728-33182729:33220654-33220701	Xq14	Rattus norvegicus lipoma HMGIC fusion partner-like 1 (Lhfpl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62666052-S	ILMN_263714	PLEKHK1_PREDICTED	XM_001080372.1	XM_001080372.1		309729	109510015	XM_001080372.1	Plekhk1_predicted	XP_001080372.1	ILMN_1349706	0002810520	S	1633	GTGGCTGCCCCTCGCAAACTTCTCCCCACCAGGAAAAGCAGTTCAGAGGA				20p11	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family K member 1 (predicted) (Plekhk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59891414-A	ILMN_289630	DGAT2	NM_001012345.1	NM_001012345.1		252900	59891414	NM_001012345.1	Dgat2	NP_001012345.1	ILMN_1376726	0005270347	S	2167	CTCACCTGTGTGCCTTTATGAGGCGTCGGGAGAAAGCCACCCTCCTGTGT	1	-	156447665-156447714	1q32	Rattus norvegicus diacylglycerol O-acyltransferase homolog 2 (mouse) (Dgat2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 6071] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence ISS]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence IEA]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence ISS]	Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol [goid 3846] [evidence ISS]; Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol [goid 3846] [evidence IEA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence IDA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence ISS]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence IEA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC108863	MGC108863
Rattus norvegicus	RefSeq	GI_30387643-I	ILMN_293630	STXBP5	NM_178345.1	NM_178345.1		81022	30387643	NM_178345.1	Stxbp5	NP_848035.1	ILMN_1376134	0000840050	I	2205	AAAGGTGAAGACCCAAAGCAGAAAGTTTTCCAAGATGGTAGCCAGTGATC	1	-	4445381-4445430	1p13	Rattus norvegicus syntaxin binding protein 5 (tomosyn) (Stxbp5), transcript variant b, mRNA.	A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IDA]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6981381-S	ILMN_269309	PPARA	NM_013196.1	NM_013196.1		25747	6981381	NM_013196.1	Ppara	NP_037328.1	ILMN_1369352	0001660441	S	1854	GCAGGGATTTGCACAGATGGCCTCCCTCCTTACCCTTGGAGATGAAGAGG	7	+	123806923-123806972	7q34	Rattus norvegicus peroxisome proliferator activated receptor alpha (Ppara), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IMP]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IMP]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 19217] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 19217] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 19217] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IMP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence IDA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence TAS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	PPAR	PPAR
Rattus norvegicus	RefSeq	GI_9506828-S	ILMN_299593	KCNMB1	NM_019273.1	NM_019273.1		29747	9506828	NM_019273.1	Kcnmb1	NP_062146.1	ILMN_1352186	0000070411	S	1062	CTGCCAGTCACAGCTCTCGATCCCCGGCTTCAGTTGGCTCACATCTGTTA	10	+	18912398-18912447	10q12	Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M, beta member 1 (Kcnmb1), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence TAS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA];  [goid 15459] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47606384-S	ILMN_272820	OLR135	NM_001001288.1	NM_001001288.1		405913	47606384	NM_001001288.1	Olr135	NP_001001288.1	ILMN_1366441	0007040088	S	735	GTGTGCAGTTCTGGTGTACTACGTGCCTATGATCAGCGTGGCTCTGGTGC	1	+	161759654-161759703	1q32	Rattus norvegicus olfactory receptor 135 (Olr135), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr135	Olr135
Rattus norvegicus	RefSeq	GI_15375323-S	ILMN_292739	ABCD2	NM_033352.1	NM_033352.1		84356	15375323	NM_033352.1	Abcd2	NP_203503.1	ILMN_1367993	0003060575	S	5401	CTTGAGTCACAAGGTCGGTGATCGTACTTGAAAACCAGCCCAGTTCACCC	7	-	129542823-129542872	7q35	Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 2 (Abcd2), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	ALDR	ALDR
Rattus norvegicus	RefSeq	GI_62647852-S	ILMN_63640	BAIAP1_PREDICTED	XM_216228.3	XM_216228.3		297463	62647852	XM_216228.3	Baiap1_predicted	XP_216228.3	ILMN_1357897	0002510253	S	3037	CGGGGCAGGTGTCATTTGTTAAGGCTGTTGTTTCTCCGTGGAGAGACTGC					PREDICTED: Rattus norvegicus BAI1-associated protein 1 (predicted) (Baiap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640773-S	ILMN_53547	RCCD1_PREDICTED	XM_218819.4	XM_218819.4		308760	109458968	XM_218819.4	Rccd1_predicted	XP_218819.4	ILMN_1374311	0003450301	S	733	TCTGGGGCAAAGGCCCAAGGGGAAGATGAACCCGGCAGTGAGCCTAGGAT	1	-	136139062-136139111	1q31	PREDICTED: Rattus norvegicus RCC1 domain containing 1 (predicted) (Rccd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649570-S	ILMN_58933	LOC298496	XM_233477.3	XM_233477.3		298496	62649570	XM_233477.3	LOC298496	XP_233477.3	ILMN_1352998	0002810377	S	2313	ATCTCTCGCTCAGTCAGCACCAACATGGACTGAAGGGCTTCTCAGGGGCG				5q36	PREDICTED: Rattus norvegicus similar to potassium voltage-gated channel KQT-like protein 4 isoform a (LOC298496), mRNA.					
Rattus norvegicus	RefSeq	GI_62648059-S	ILMN_50269	LOC312654	XM_232287.3	XM_232287.3		312654	62648059	XM_232287.3	LOC312654	XP_232287.3	ILMN_1354729	0001400170	S	5397	AAGCCAGCACAGGCAAAGCGACAGCTCACACAGCACCCCCAGTAGAATGG				4q42	PREDICTED: Rattus norvegicus hypothetical LOC312654 (predicted) (LOC312654), mRNA.					
Rattus norvegicus	RefSeq	GI_62655769-S	ILMN_288630	LOC497873	XM_001056464.1	XM_001056464.1		497873	109490278	XM_001056464.1	LOC497873	XP_001056464.1	ILMN_1368591	0004610347	S	606	CATGGGTGCCAACGTGCCCAAGAGTGAGCGCATAGTGCTACCAGGAAACC				10q12	PREDICTED: Rattus norvegicus similar to protease, serine, 33 (LOC497873), mRNA.					
Rattus norvegicus	RefSeq	GI_23463300-S	ILMN_62454	ST18	NM_153310.2	NM_153310.2		266680	77628156	NM_153310.2	St18	NP_695222.2	ILMN_1359803	0007040524	S	3088	GCCAGGCTCTCATCTCCAGTCTTGCTGACATCCAGCTTCCACAGATGGGT	5	-	12667927-12667930:12670383-12670428	5q12	Rattus norvegicus suppression of tumorigenicity 18 (St18), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	r-MyT3; Nzf3	r-MyT3; Nzf3
Rattus norvegicus	RefSeq	GI_47087100-S	ILMN_68762	ZBTB9	NM_213564.2	NM_213564.2		294289	71896569	NM_213564.2	Zbtb9	NP_998729.1	ILMN_1354095	0001090162	S	2586	ATGACAGATGTGACCCAGGAACTCAAGAGGTGGCAGCTGGCCTACAGCGC	20	+	5215067-5215116	20p12	Rattus norvegicus zinc finger and BTB domain containing 9 (Zbtb9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	3930402F13Rik	3930402F13Rik
Rattus norvegicus	RefSeq	GI_62666020-S	ILMN_54313	LOC499438	XM_574761.1	XM_574761.1		499438	62666020	XM_574761.1	LOC499438	XP_574761.1	ILMN_1359098	0007000064	S	258	AGAGCACAAAGGAATACAACCCCGGGGATAGAAAACCTAGGGAAGAGATG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499438), mRNA.					
Rattus norvegicus	RefSeq	GI_62654166-S	ILMN_66609	ARMC8_PREDICTED	XM_236599.4	XM_236599.4		315949	109483803	XM_236599.4	Armc8_predicted	XP_236599.3	ILMN_1355755	0000130239	S	4095	GCTATCAAAGGGCACAGTCTTAGCACCAGGAGCGGCAATAAGTGGCCCGG	8	-	104342034-104342083	8q31	PREDICTED: Rattus norvegicus armadillo repeat containing 8 (predicted) (Armc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654168-S	ILMN_66609	ARMC8_PREDICTED	XM_236599.4	XM_236599.4		315949	109483803	XM_236599.4	Armc8_predicted	XP_236599.3	ILMN_1354145	0002690575	S	2354	GACTCCTTCTATTTGCACACGTCACCTTGGACTGCAGGGAGCTGTTTTGC	8	-	104343775-104343824	8q31	PREDICTED: Rattus norvegicus armadillo repeat containing 8 (predicted) (Armc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648407-S	ILMN_67149	LOC502900	XM_578402.1	XM_578402.1		502900	62648407	XM_578402.1	LOC502900	XP_578402.1	ILMN_1356011	0004070725	S	815	GCATGTGGGCAAAGACATTTTTCATGCAGCCAAGCACCAGCGCATCCCGG				4q42	PREDICTED: Rattus norvegicus similar to macrophage antigen h (LOC502900), mRNA.					
Rattus norvegicus	RefSeq	GI_62653166-S	ILMN_60905	LOC363009	XM_343342.2	XM_343342.2		363009	62653166	XM_343342.2	LOC363009	XP_343343.2	ILMN_1363309	0005720504	S	5294	GCAAGATCCTGCTTGGTTGGTACAGCACGGAGCCAGTCTGCAGCCAAACG					PREDICTED: Rattus norvegicus similar to mKIAA0701 protein (LOC363009), mRNA.					
Rattus norvegicus	RefSeq	GI_40445398-S	ILMN_262562	SVS1	NM_199095.1	NM_199095.1		297081	40445398	NM_199095.1	Svs1	NP_954526.1	ILMN_1373018	0004010273	S	2455	CAGCTGGCAGTGACTAAGTACCAGGAGTCTGAACGGTTCCACAGTAGCCT	4	+	77108639-77108688	4q24	Rattus norvegicus seminal vesicle secretory protein 1 (Svs1), mRNA.		The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence IEA]	Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IEA]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575857-S	ILMN_275061	ESM1	NM_022604.2	NM_022604.2		64536	47575857	NM_022604.2	Esm1	NP_072126.1	ILMN_1360134	0003850364	S	1818	ACCGAGGTTCCACCTGAAGGACCTTAGCGCAAGAAGAACTGTTGTACTGG	2	+	44634481-44634530	2q14	Rattus norvegicus endothelial cell-specific molecule 1 (Esm1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]	Pg25	Pg25
Rattus norvegicus	RefSeq	GI_11527393-S	ILMN_273377	CHGA	NM_021655.1	NM_021655.1		24258	11527393	NM_021655.1	Chga	NP_067687.1	ILMN_1353197	0003390735	S	1264	AGGCGACTTTGAGGAAAAGAAGGAAGAGGAGGGCAGCGCCAACCGCAGAG	6	+	126832368-126832417	6q32	Rattus norvegicus chromogranin A (Chga), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence IMP]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105435	MGC105435
Rattus norvegicus	RefSeq	GI_62718137-S	ILMN_67489	LOC501299	XM_576712.1	XM_576712.1		501299	62718137	XM_576712.1	LOC501299	XP_576712.1	ILMN_1368211	0006350288	S	175	CTGAGACTTCTTGGAATCCCTGTGATGTCACCAGTATCGTTGTGACAACC					PREDICTED: Rattus norvegicus LOC501299 (LOC501299), mRNA.					
Rattus norvegicus	RefSeq	GI_62664886-S	ILMN_66638	RGD1563628_PREDICTED	XM_222244.4	XM_222244.4		304554	109507780	XM_222244.4	RGD1563628_predicted	XP_222244.4	ILMN_1371804	0004540403	S	3474	GTCCTGCATGGTCTTCAGCCACACACCACAGCGTTCTCGGGACAGATGGA	19	-	14402371-14402420	19p11	PREDICTED: Rattus norvegicus similar to Seizure 6-like protein precursor (predicted) (RGD1563628_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661125	ILMN_60832	LOC305710	XM_223815.3	XM_223815.3		305710	62661125	XM_223815.3	LOC305710	XP_223815.3	ILMN_1650843	0003360537	S	3657	CATCACGCAGAGAGGAGATAGGAAGTTTGGGGAGGACCTGCAGCGTTGCC				15p16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32685 (LOC305710), mRNA.					
Rattus norvegicus	RefSeq	GI_62664989-S	ILMN_48740	LOC301906	XM_217507.3	XM_217507.3		301906	62664989	XM_217507.3	LOC301906	XP_217507.3	ILMN_1356236	0002030136	S	177	CTACCTCGAACAGCTAAACCACCGAAGAAAAGAGTGAAAATGGGAAGAGC				19q11	PREDICTED: Rattus norvegicus similar to Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) (LOC301906), mRNA.					
Rattus norvegicus	RefSeq	GI_60223046-S	ILMN_300175	DNTT	NM_001012461.1	NM_001012461.1		294051	60223046	NM_001012461.1	Dntt	NP_001012479.1	ILMN_1358493	0005690037	S	1418	GCGGAAGATGATGCTGGACAACCACGCTCTGTATGACAAGACCAAGAGGG	1	+	246227822-246227867:246231430-246231433	1q54	Rattus norvegicus deoxynucleotidyltransferase, terminal (Dntt), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides [goid 6259] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) [goid 3912] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) [goid 3912] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109152	MGC109152
Rattus norvegicus	RefSeq	GI_62659879-S	ILMN_53499	TRP53BP2_PREDICTED	XM_223012.4	XM_223012.4		305025	109498317	XM_223012.4	Trp53bp2_predicted	XP_223012.4	ILMN_1365740	0006200706	S	1179	GCCTGACAGTTCCTTGGTCATGCAGTCCGCAGAGGGGCCGATGAAGATAC	13	+	98445840-98445889	13q26	PREDICTED: Rattus norvegicus transformation related protein 53 binding protein 2 (predicted) (Trp53bp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667294-S	ILMN_296948	RGD1564103_PREDICTED	XM_001054481.1	XM_001054481.1		367912	109512367	XM_001054481.1	RGD1564103_predicted	XP_001054481.1	ILMN_1351937	0004230079	S	1610	GGCTCCAGCATTTACAGTCCCCAACCTCCAACCACTCTTCTAAAGGAGGG				Xq35	PREDICTED: Rattus norvegicus similar to Glycine receptor alpha-4 chain precursor (predicted) (RGD1564103_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865915-A	ILMN_285211	RFX3	NM_001012172.1	NM_001012172.1		361746	58865915	NM_001012172.1	Rfx3	NP_001012172.1	ILMN_1376272	0004730484	S	2066	ATCAGGCAGTGCAGCGCCACGGGCAACACCTACACTGCGGTCTAACAGCA	1	-	231343046-231343095	1q52	Rattus norvegicus regulatory factor X, 3 (influences HLA class II expression) (Rfx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648856-S	ILMN_67325	LOC297908	XM_232791.3	XM_232791.3		297908	62648856	XM_232791.3	LOC297908	XP_232791.3	ILMN_1375083	0006040400	S	459	GGAGACGATGTCAATCCTGAACTCTGTGGGTGTTCAGCTTGTGCAGAGCG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC297908), mRNA.					
Rattus norvegicus	RefSeq	GI_62655366-S	ILMN_65948	NGEF_PREDICTED	XM_346854.3	XM_346854.3		246217	109486320	XM_346854.3	Ngef_predicted	XP_346855.3	ILMN_1354409	0005360411	S	2732	ACGTGTCCTTCCCTACCTTGGAAGCAGCTAAGAGTCTACTGGGCACACCG	9	-	86294511-86294560	9q35	PREDICTED: Rattus norvegicus neuronal guanine nucleotide exchange factor (predicted) (Ngef_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506956-S	ILMN_264566	PCSK7	NM_019246.1	NM_019246.1		29606	9506956	NM_019246.1	Pcsk7	NP_062119.1	ILMN_1371061	0003710242	S	3124	GTGTCCCAGGAAAACTGGGAGGCACAGGATTCCCAGCCAGCACCCTTGCT	8	+	48901607-48901656	8q22	Rattus norvegicus proprotein convertase subtilisin/kexin type 7 (Pcsk7), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence ISS]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865707-A	ILMN_294521	GSTO2	NM_001012071.1	NM_001012071.1		309465	58865707	NM_001012071.1	Gsto2	NP_001012071.1	ILMN_1376727	0002370136	S	1213	GATTTTGGGCTGTGTGGCCCAATCGTACGGTAATCCAGTCATTGCCCAGG	1	+	253274939-253274971:253274972-253274988	1q54	Rattus norvegicus glutathione S-transferase omega 2 (Gsto2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981207-S	ILMN_300122	NR3C2	NM_013131.1	NM_013131.1		25672	6981207	NM_013131.1	Nr3c2	NP_037263.1	ILMN_1354582	0000110142	S	5496	GACGAGGTGTTTCTGGGGGAAAGGGGCTGAGTTAACGCTGTGAGACTGGA	19	-	32527950-32527999	19q11	Rattus norvegicus nuclear receptor subfamily 3, group C, member 2 (Nr3c2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The regulation of the levels, transport, and metabolism of sodium ions within a cell or between a cell and its external environment [goid 6883] [evidence ISS]; The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds [goid 7588] [evidence ISS]; Any series of molecular signals generated as a consequence of a mineralocorticoid binding to its receptor [goid 31959] [evidence IMP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IDA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IMP]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence ISS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IMP]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with mineralocorticoid to initiate a change in cell activity [goid 17082] [evidence IDA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Mlr; MCR	Mlr; MCR
Rattus norvegicus	RefSeq	GI_62661227-S	ILMN_67699	LOC501972	XM_577400.1	XM_577400.1		501972	62661227	XM_577400.1	LOC501972	XP_577400.1	ILMN_1355723	0006660592	S	161	GCTGCTGACCAAGGCATGGAGGAGGCGGTGCCTTTATCTTTATCTGTGGG					PREDICTED: Rattus norvegicus similar to prostaglandin D receptor (LOC501972), mRNA.					
Rattus norvegicus	RefSeq	GI_62645425-S	ILMN_270775	EXT2_PREDICTED	XM_001078606.1	XM_001078606.1		311215	109470349	XM_001078606.1	Ext2_predicted	XP_001078606.1	ILMN_1360537	0004280053	S	2247	GCACAGCCATCGACGGACTCTCACTAGACCAGACTCACATGGTAGAGAGG				3q24	PREDICTED: Rattus norvegicus exostoses (multiple) 2 (predicted) (Ext2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605727-S	ILMN_290831	TMEM218	NM_001008325.1	NM_001008325.1		300516	56605727	NM_001008325.1	Tmem218	NP_001008326.1	ILMN_1360926	0001400520	S	687	CAAGCTGTGAGTAGTGGACTTGGGGGAAAGGAGTTTTGGGCTCTGTTGTC	8	+	38474356-38474405	8q21	Rattus norvegicus transmembrane protein 218 (Tmem218), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105984	MGC105984
Rattus norvegicus	RefSeq	GI_62718099-S	ILMN_65414	LOC501293	XM_576706.1	XM_576706.1		501293	62718099	XM_576706.1	LOC501293	XP_576706.1	ILMN_1362454	0004120372	S	584	CAACGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTACAAGAGAGCTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501293), mRNA.					
Rattus norvegicus	RefSeq	GI_62660212-I	ILMN_54563	ART3_PREDICTED	XM_573565.1	XM_573565.1		305235	62660212	XM_573565.1	Art3_predicted	XP_573565.1	ILMN_1375337	0006130286	S	518	CCCAGCTGAGAGTGGGAATCGGTTTGAGTCGGGGCATCATTTAAACGTCC				14p22	PREDICTED: Rattus norvegicus ADP-ribosyltransferase 3 (predicted) (Art3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453379-S	ILMN_291051	CALCB	NM_138513.1	NM_138513.1		171519	25453379	NM_138513.1	Calcb	NP_612522.1	ILMN_1369359	0004780176	S	390	CGCAGGGACCTTCGGGTCTGAGGAACTAACGCTCCAGGAAGAAGGTTACA	1	+	172779913-172779933:172779934-172779956:172780678-172780683	1q34	Rattus norvegicus calcitonin-related polypeptide, beta (Calcb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655552-S	ILMN_54732	LOC363298	XM_347119.2	XM_347119.2		363298	62655552	XM_347119.2	LOC363298	XP_347120.2	ILMN_1362730	0004610411	S	1765	TGCGCTGCCCAGAAAAGGCGAGTTGGGGATTGCCTTCACTTCTCTCCAGC					PREDICTED: Rattus norvegicus similar to mitogen-activated protein kinase 1, serine/threonine protein kinase (LOC363298), mRNA.					
Rattus norvegicus	RefSeq	GI_62651214-I	ILMN_52630	VRK1_PREDICTED	XM_576097.1	XM_576097.1		362779	62651214	XM_576097.1	Vrk1_predicted	XP_576097.1	ILMN_1375587	0006770286	S	637	TACGAGGTGCAGAGGGGACAGCGCCGTGGGCAAGTCGCAAGTCTAGAAAG				6q32	PREDICTED: Rattus norvegicus vaccinia related kinase 1 (predicted) (Vrk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640971-S	ILMN_63356	LOC365306	XM_577820.1	XM_577820.1		365306	62640971	XM_577820.1	LOC365306	XP_577820.1	ILMN_1349439	0000770139	S	156	CATGACACGACTCTTGTGGAGAAAGAAGGCCTTGGCAGAGCTCCAGGACT				1q32	PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase 4a1 (LOC365306), mRNA.					
Rattus norvegicus	RefSeq	GI_62718308-S	ILMN_53207	LOC501358	XM_576770.2	XM_576770.2		501358	109513487	XM_576770.2	LOC501358	XP_576770.2	ILMN_1359225	0003120446	S	672	GTGCAAGAGAGCTGGAATTGGACACAGCCCAGTAAGAGAGCTTCCTGAAG	Un|NW_047883.1	+	1023549-1023598		PREDICTED: Rattus norvegicus hypothetical LOC501358 (LOC501358), mRNA.					
Rattus norvegicus	RefSeq	GI_62645367-S	ILMN_264254	OLR702_PREDICTED	XM_001077079.1	XM_001077079.1		295900	109470266	XM_001077079.1	Olr702_predicted	XP_001077079.1	ILMN_1358487	0003850575	S	417	TCGGGTTTGCATTCTTCTATTGGTGGCAGCCTGTGCTGGAGGTTTTGGCC				3q24	PREDICTED: Rattus norvegicus olfactory receptor 702 (predicted) (Olr702_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653119-S	ILMN_266631	ESPL1_PREDICTED	XM_001067790.1	XM_001067790.1		315330	109482996	XM_001067790.1	Espl1_predicted	XP_001067790.1	ILMN_1374404	0006110717	S	932	CTGTGCCAGATGGGGGTTGAGCTGCTGGAAGCTGTGGAAGAAAGACCAGG				7q36	PREDICTED: Rattus norvegicus extra spindle poles like 1 (S. cerevisiae) (predicted) (Espl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653121-S	ILMN_266631	ESPL1_PREDICTED	XM_001067790.1	XM_001067790.1		315330	109482996	XM_001067790.1	Espl1_predicted	XP_001067790.1	ILMN_1363701	0004560333	S	6107	AGTGCAGCCCTCGCAGTGCATGGAAACCTGGAGGGAGCTGGTATTGTGCT				7q36	PREDICTED: Rattus norvegicus extra spindle poles like 1 (S. cerevisiae) (predicted) (Espl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18158438-S	ILMN_285797	SCGB2A1	NM_080770.1	NM_080770.1		25010	18158438	NM_080770.1	Scgb2a1	NP_542948.1	ILMN_1371620	0005700070	S	1	GAGTTTCCTGATTTCTGTCTTGGACAACAGAACAACCCACAGGGACTGCC	1	+	212162326-212162375	1q43	Rattus norvegicus secretoglobin, family 2A, member 1 (Scgb2a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]	Psbp1	Psbp1
Rattus norvegicus	RefSeq	GI_62648802-S	ILMN_264589	NDUFB6_PREDICTED	XM_001058166.1	XM_001058166.1		297990	109476259	XM_001058166.1	Ndufb6_predicted	XP_001058166.1	ILMN_1350924	0004200600	S	28	TAAGTGACCGGCCCCAGGTTCGGGTGCGCGCTGTCACTCTCTGGTAAGCT				5q22	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 (predicted) (Ndufb6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656549-S	ILMN_55385	PRPF8	XM_213385.4	XM_213385.4		287530	109488528	XM_213385.4	Prpf8	XP_213385.3	ILMN_1369022	0002470487	S	6773	CCCCTAGCGGGTATGAGTGGGGTCGGCAGAACACAGACAAAGGCAACAAC	10	+	62830302-62830351	10q24	PREDICTED: Rattus norvegicus pre-mRNA processing factor 8 (Prpf8), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664282-S	ILMN_289644	FCHSD1_PREDICTED	XM_001066113.1	XM_001066113.1		307482	109507225	XM_001066113.1	Fchsd1_predicted	XP_001066113.1	ILMN_1363102	0000940692	S	1748	CCCAGGGCTCAAGATGGAGTGGACGATGGCTTCTGGAGGGGAGAATTTGG				18p11	PREDICTED: Rattus norvegicus FCH and double SH3 domains 1 (predicted) (Fchsd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576954	ILMN_275062	OLR255	NM_001000947.1	NM_001000947.1		405291	47576954	NM_001000947.1	Olr255	NP_001000947.1	ILMN_1360463	0001660050	S	61	ACAGATGACCCAGTTCTTAGAGTCATCCTCTTCACCATTATCATCTGCAT	1	-	165683711-165683760	1q33	Rattus norvegicus olfactory receptor 255 (Olr255), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr255	Olr255
Rattus norvegicus	RefSeq	GI_62666812-S	ILMN_276270	AP1S2_PREDICTED	XM_001068004.1	XM_001068004.1		302671	109511708	XM_001068004.1	Ap1s2_predicted	XP_001068004.1	ILMN_1372527	0002630025	S	1624	GCAGACTTGACAGCAGCTCCCTATCCTTTCATGTCACTGCCTAGTCGTCG				Xq21	PREDICTED: Rattus norvegicus adaptor-related protein complex 1, sigma 2 subunit (predicted) (Ap1s2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078834-S	ILMN_288521	TTLL9	NM_001014051.1	NM_001014051.1		311548	62078834	NM_001014051.1	Ttll9	NP_001014073.1	ILMN_1354406	0003990072	S	1398	AGAAGAAAGCCTCTAGCTGACCCCCAGCCGGAAGAAATGAGGCCCTGGCA	3	+	143351010-143351029:143351030-143351059	3q41	Rattus norvegicus tubulin tyrosine ligase-like family, member 9 (Ttll9), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638357-S	ILMN_68350	LOC498987	XM_574278.1	XM_574278.1		498987	62638357	XM_574278.1	LOC498987	XP_574278.1	ILMN_1352407	0005670136	S	1476	AGACCGTGTTCCGTGGAGGTATATGCTACTTTAGCCAGTGTGCTCCTCCC				1p12	PREDICTED: Rattus norvegicus similar to KIAA1913 (LOC498987), mRNA.					
Rattus norvegicus	RefSeq	GI_47576506	ILMN_270652	OLR87	NM_001000543.1	NM_001000543.1		365329	47576506	NM_001000543.1	Olr87	NP_001000543.1	ILMN_1650681	0000870072	S	430	GCTGTCATGGCATCTATTGTGATAGGGAGACCTGTCCTTCTTGTCATCCC	1	+	161019857-161019906	1q32	Rattus norvegicus olfactory receptor 87 (Olr87), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr87	Olr87
Rattus norvegicus	RefSeq	GI_62666989-S	ILMN_293511	RGD1563904_PREDICTED	XM_001061929.1	XM_001061929.1		503442	109511889	XM_001061929.1	RGD1563904_predicted	XP_001061929.1	ILMN_1357121	0006380079	S	938	AAACCCAAGCTGAAGGTACAGGCCAGGGAAGCACGAAATCCAAGGCCAAG				Xq22	PREDICTED: Rattus norvegicus similar to melanoma antigen family B, 4 (predicted) (RGD1563904_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577340-S	ILMN_301475	OLR421	NM_001000824.1	NM_001000824.1		405113	47577340	NM_001000824.1	Olr421	NP_001000824.1	ILMN_1350114	0003520176	S	893	GAGCTGTCAGGAGGCTTCTTAGAAAACTTTGCATCCCAGGAAGCTTCCAC	3	-	16483566-16483615	3q11	Rattus norvegicus olfactory receptor 421 (Olr421), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr421	Olr421
Rattus norvegicus	RefSeq	GI_61097934-S	ILMN_281302	CCNA2	NM_053702.1	NM_053702.1		114494	61097934	NM_053702.1	Ccna2	NP_446154.1	ILMN_1353596	0001940010	S	1507	GGAGCTGCCTTCCACTTAGCTCTCTACACAGTCACAGGACAAAGCTGGCC	2	-	123063563-123063565:123063883-123063929	2q25	Rattus norvegicus cyclin A2 (Ccna2), mRNA.	The pronucleus originating from the ovum that is being fertilized [goid 1939] [evidence IEA]; The pronucleus originating from the ovum that is being fertilized [goid 1939] [evidence ISS]; The pronucleus originating from the spermatozoa that was involved in fertilization [goid 1940] [evidence IEA]; The pronucleus originating from the spermatozoa that was involved in fertilization [goid 1940] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus [goid 33762] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IMP]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_8393229-S	ILMN_302650	CYP2B12	NM_017156.1	NM_017156.1		29295	8393229	NM_017156.1	Cyp2b12	NP_058852.1	ILMN_1362631	0001090722	S	2465	TGCTGGCTGACTTTTTTGCCACACCCAACTTCTCAGGCCCCTGACTGTGG				1q21	Rattus norvegicus cytochrome P450, family 2, subfamily b, polypeptide 12 (Cyp2b12), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	 [goid 19373] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA];  [goid 8392] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647553-S	ILMN_49190	LOC502813	XM_578312.1	XM_578312.1		502813	62647553	XM_578312.1	LOC502813	XP_578312.1	ILMN_1349362	0001400059	S	587	GGTCCCCAACAGGTTCAGTGGCACCTCGAGAGGGGATATCGTTTTGACTC				4q31	PREDICTED: Rattus norvegicus similar to monoclonal antibody kappa light chain (LOC502813), mRNA.					
Rattus norvegicus	RefSeq	GI_57164080-S	ILMN_263560	V1RJ6	NM_001009507.1	NM_001009507.1		494226	57164080	NM_001009507.1	V1rj6	NP_001009507.1	ILMN_1362301	0004670463	S	43	CTCATATTCCAGTTCTGTCTTGGTATCCTGGGGAACTCAGCACTGTTCTT	1	+	73551950-73551999	1q21	Rattus norvegicus vomeronasal 1 receptor, J6 (V1rj6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664743-S	ILMN_58616	LOC502182	XM_577639.1	XM_577639.1		502182	62664743	XM_577639.1	LOC502182	XP_577639.1	ILMN_1354136	0005670576	S	1642	AGCCACAGGAGGGAACTTTTGCTCATTCAAACCTCAGGGTCCGGCAGCGC					PREDICTED: Rattus norvegicus similar to PRAMEl7 (LOC502182), mRNA.					
Rattus norvegicus	RefSeq	GI_18777750-S	ILMN_270067	CLDN16	NM_131905.1	NM_131905.1		155268	18777750	NM_131905.1	Cldn16	NP_571980.1	ILMN_1354805	0002940161	S	966	GGCCAAATCCTACAAGGCCCCTAGGACAGAGACAGCCAAAATGTACGCTG	11	-	76314421-76314466:76314467-76314470	11q22	Rattus norvegicus claudin 16 (Cldn16), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence TAS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Pcln1	Pcln1
Rattus norvegicus	RefSeq	GI_62665492-S	ILMN_274348	ANKRD11_PREDICTED	XM_001077732.1	XM_001077732.1		365023	109508926	XM_001077732.1	Ankrd11_predicted	XP_001077732.1	ILMN_1360120	0002970397	S	7871	GAGCTGGACCCTGCTGGGCACAAGTCCCTGTGTGTAAATGAGGTGCCATC				19q12	PREDICTED: Rattus norvegicus ankyrin repeat domain 11 (predicted) (Ankrd11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576126-S	ILMN_274604	OLR982	NM_001000702.1	NM_001000702.1		404929	47576126	NM_001000702.1	Olr982	NP_001000702.1	ILMN_1354426	0002100685	S	444	GGCTGGATTTCTCATCATCTTTCCACCTGTGATCATGGGCCTCCAACTGG	7	-	5825545-5825594	7q11	Rattus norvegicus olfactory receptor 982 (Olr982), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr982	Olr982
Rattus norvegicus	RefSeq	GI_56711253-S	ILMN_280126	COL3A1	NM_032085.1	NM_032085.1		84032	56711253	NM_032085.1	Col3a1	NP_114474.1	ILMN_1354941	0005220487	S	4177	CCAGCCGGGCCTCCCAGAACATTACATACCACTGCAAAAACAGCATTGCC	9	+	44316528-44316577	9q22	Rattus norvegicus collagen, type III, alpha 1 (Col3a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils [goid 5586] [evidence TAS]; A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils [goid 5586] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEP]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 32964] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48565] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50777] [evidence ISS]	Interacting selectively with an integrin [goid 5178] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]	MGC93704	MGC93704
Rattus norvegicus	RefSeq	GI_62663031-S	ILMN_67785	LOC302085	XM_217530.3	XM_217530.3		302085	62663031	XM_217530.3	LOC302085	XP_217530.2	ILMN_1373688	0005360010	S	467	TGACTAAGTCCACCAATTCCGCTGACGGTCTGACTGCAGTGGCTGCGGCT					PREDICTED: Rattus norvegicus similar to hypothetical protein FG10084.1 (LOC302085), mRNA.					
Rattus norvegicus	RefSeq	GI_25188205-S	ILMN_275027	ONECUT1	NM_022671.2	NM_022671.2		25231	25188205	NM_022671.2	Onecut1	NP_073162.1	ILMN_1363497	0001850711	S	2073	CACCAGTGTTTAGGGACTCAGGCACGGCTGGTCTTCAGGAAGGGTTGCAC	8	+	79672485-79672534	8q24	Rattus norvegicus one cut homeobox 1 (Onecut1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IPI]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2064] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IMP]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence IEA]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; The assembly of a cilium, a specialized eukaryotic locomotor organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 42384] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IMP]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IMP]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Hnf6	Hnf6
Rattus norvegicus	RefSeq	GI_9507130-S	ILMN_273642	SOX10	NM_019193.1	NM_019193.1		29361	9507130	NM_019193.1	Sox10	NP_062066.1	ILMN_1366090	0006660154	S	2892	TGCAGCCCAGTCCACACGTAACACATCGCTGCCCCTTTATCTCCACAGTC	7	-	117138781-117138830	7q34	Rattus norvegicus SRY (sex determining region Y)-box 10 (Sox10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence NAS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence IEA]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence ISS]; The process by which the anatomical structures of the gut are generated and organized. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48547] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system [goid 48709] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system [goid 48709] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells [goid 48863] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646721-I	ILMN_299773	DMTF1	NM_053693.1	NM_053693.1		114485	62899017	NM_053693.1	Dmtf1	NP_446145.1	ILMN_1375855	0003840279	S	2819	CCAGGTCCAAGATCATGGGAGGTGGCTGTGATGGTTAACCCATTGCTGGC	4	+	21369151-21369200	4q12	Rattus norvegicus cyclin D binding myb-like transcription factor 1 (Dmtf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34854040-A	ILMN_299773	DMTF1	NM_053693.1	NM_053693.1		114485	62899017	NM_053693.1	Dmtf1	NP_446145.1	ILMN_1376429	0005290300	S	1044	CGCCTCTTCTGTCAAAGACCGCTGCCGGCTGATGAAGGACACCTGCAACA	4	+	21357707-21357756	4q12	Rattus norvegicus cyclin D binding myb-like transcription factor 1 (Dmtf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647515-S	ILMN_70282	LOC502793	XM_578292.1	XM_578292.1		502793	62647515	XM_578292.1	LOC502793	XP_578292.1	ILMN_1374071	0004120528	S	349	ACTGCGGCCAAGGAGTCAGTAGGGATATTGTGATGACCCAGGGAGCATTC					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain VK-1 (LOC502793), mRNA.					
Rattus norvegicus	RefSeq	Rn.15275	ILMN_295236	LHPP	NM_001009706.1	NM_001009706.1		361663	57528358	NM_001009706.1	Lhpp	NP_001009706.1	ILMN_1530391	0002970280	S	1575	ACTTGAATATGTTGTTTCCAGTGCACAGAGCGACCTAATGGCTCAATAAA	1	+	192174534-192174583	1q41	Rattus norvegicus phospholysine phosphohistidine inorganic pyrophosphate phosphatase (Lhpp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: diphosphate + H2O = 2 phosphate [goid 4427] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57528358-S	ILMN_295236	LHPP	NM_001009706.1	NM_001009706.1		361663	57528358	NM_001009706.1	Lhpp	NP_001009706.1	ILMN_1357051	0005340292	S	1516	GCCCACCTCTACAGTCAAGGGTGCAGGCACAGAAAGCACCTTAGAGTCCG	1	+	192174475-192174524	1q41	Rattus norvegicus phospholysine phosphohistidine inorganic pyrophosphate phosphatase (Lhpp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: diphosphate + H2O = 2 phosphate [goid 4427] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27545399-S	ILMN_287931	ZFP455	NM_173314.1	NM_173314.1		286979	27545399	NM_173314.1	Zfp455	NP_775436.1	ILMN_1359194	0000840278	S	1320	GCCTTTCGTCATCACTCATCCCTCAGGAAACATAAGACAGTGCATACTGG	2	+	86210539-86210588	2q23	Rattus norvegicus zinc finger protein 455 (Zfp455), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Kzf-2; Kzf2	Kzf-2; Kzf2
Rattus norvegicus	RefSeq	GI_62666993-S	ILMN_60114	LOC302756	XM_229054.3	XM_229054.3		302756	62666993	XM_229054.3	LOC302756	XP_229054.3	ILMN_1353880	0001230315	S	2659	GGCAACAGATTCATCCCCAGGCCTTAGTGCGAGGATTGGTCCTCATGCAG				Xq22	PREDICTED: Rattus norvegicus similar to MGC79482 protein (LOC302756), mRNA.					
Rattus norvegicus	RefSeq	GI_56606095-S	ILMN_277758	MGC105649	NM_001008518.1	NM_001008518.1		302884	56606095	NM_001008518.1	MGC105649	NP_001008518.1	ILMN_1374845	0006510017	S	972	GGCCAGCACCCAGTACAGTCTGACCAAACAGAGACCAGGCGATTGTTTAA	3	+	109613296-109613345	3q35	Rattus norvegicus hypothetical LOC302884 (MGC105649), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62649441-S	ILMN_292645	RGD1562603_PREDICTED	XR_008675.1	XR_008675.1		366443	109477044	XR_008675.1	RGD1562603_predicted		ILMN_1373740	0000460398	S	981	CCCAGAGTGTTTGACCCTTATCGGGTCTTCCCAACACAGCCACTTGTTCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031605 (predicted) (RGD1562603_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653878-S	ILMN_280751	RGD1307526	XR_009637.1	XR_009637.1		315792	109484950	XR_009637.1	RGD1307526		ILMN_1370599	0002470102	S	3419	GGCGCTGTGTGAACATGAGTGGTTTGCAGCTGAATGGCAGTGGTTACGTC				8q24	PREDICTED: Rattus norvegicus similar to modulator of estrogen induced transcription, transcript variant 1 (RGD1307526), misc RNA.					
Rattus norvegicus	RefSeq	GI_62653876-S	ILMN_280751	RGD1307526	XR_009637.1	XR_009637.1		315792	109484950	XR_009637.1	RGD1307526		ILMN_1359196	0000520070	S	144	GAGCTGAAGCGCCGCAACTTGGACATCAACGGGGTCAAGACGGTACTGGT				8q24	PREDICTED: Rattus norvegicus similar to modulator of estrogen induced transcription, transcript variant 1 (RGD1307526), misc RNA.					
Rattus norvegicus	RefSeq	GI_62664716	ILMN_264425	CBLN2	NM_001012740.1	NM_001012740.1		291388	60678257	NM_001012740.1	Cbln2	NP_001012758.1	ILMN_1649772	0000450131	S	1350	CTAGGGTTTTGGGGATATTGGGAGGGAGCTGGGCATTGGGAACTTGTCGA	18	+	83312392-83312441	18q13	Rattus norvegicus cerebellin 2 precursor (Cbln2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62664718	ILMN_264425	CBLN2	NM_001012740.1	NM_001012740.1		291388	60678257	NM_001012740.1	Cbln2	NP_001012758.1	ILMN_1650423	0000430162	S	2158	GATGCCAAAAGAAGCAGGGTTTGGAAAGCCACCCTTGGGGTACAGCAGCC	18	+	83313200-83313249	18q13	Rattus norvegicus cerebellin 2 precursor (Cbln2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62654188-S	ILMN_67505	PPP2R3A	XM_576459.2	XM_576459.2		363122	109483809	XM_576459.2	Ppp2r3a	XP_576459.1	ILMN_1351234	0002190717	S	3544	AGCCCTCTGACTGGGACAGGTTTGCTGCTGAGGAGTACGAGGCTCTGGTG	8	-	106078909-106078958	8q31	PREDICTED: Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha, transcript variant 2 (Ppp2r3a), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576798-S	ILMN_282971	OLR192	NM_001000549.1	NM_001000549.1		365336	47576798	NM_001000549.1	Olr192	NP_001000549.1	ILMN_1366664	0005340739	S	666	CATTCTGAAGGCTGTGCTCAGGATCAAAGCAGAGGGAGCTGTGGCCAAGG	1	-	162882041-162882090	1q33	Rattus norvegicus olfactory receptor 192 (Olr192), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr1-162978233-162977295_ORF; Olr192	ratchr1-162978233-162977295_ORF; Olr192
Rattus norvegicus	RefSeq	GI_62653136-S	ILMN_59210	HOXC9_PREDICTED	XM_217059.3	XM_217059.3		300264	62653136	XM_217059.3	Hoxc9_predicted	XP_217059.3	ILMN_1358133	0005390397	S	1655	GGAGGCAGGAGAGAAACTGCGTTCTCTTACCCCAGCGCAACTGAAATAAA					PREDICTED: Rattus norvegicus homeo box C9 (predicted) (Hoxc9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454245-S	ILMN_302651	RPL3	NM_198753.1	NM_198753.1		300079	38454245	NM_198753.1	Rpl3	NP_942048.1	ILMN_1351455	0000070524	S	1215	CGCATTGCCAAGGAGGAAGGTGCCTGATGCCAGGAGTACTTTGTGCAGCT	7	-	118314559-118314585:118314586-118314608	7q34	Rattus norvegicus ribosomal protein L3 (Rpl3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72934	MGC72934
Rattus norvegicus	RefSeq	GI_6981641-S	ILMN_269648	TCP1	NM_012670.1	NM_012670.1		24818	6981641	NM_012670.1	Tcp1	NP_036802.1	ILMN_1359719	0000630121	S	1779	GGGTGTAATGTCTTAGCCTTGGGTGTCTCACATTAAAGTACAACGAGCTG	1	-	42103545-42103594	1q11	Rattus norvegicus t-complex 1 (Tcp1), mRNA.	A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence IDA]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence ISS]; A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor [goid 5832] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	CCTalpha; Tcp-1	CCTalpha; Tcp-1
Rattus norvegicus	RefSeq	GI_62543496-S	ILMN_273593	CRBN	NM_001015003.2	NM_001015003.2		297498	77539060	NM_001015003.2	Crbn	NP_001015003.1	ILMN_1370207	0000130278	S	1137	GCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTATGCATGGACCATT	4	-	142137005-142137021:142137655-142137687	4q41	Rattus norvegicus cereblon (Crbn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP [goid 6510] [evidence IEA]	Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the hydrolysis of peptide bonds [goid 4176] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62663430-S	ILMN_263862	RIOK1	XM_214454.3	XM_214454.3		291061	62663430	XM_214454.3	Riok1	XP_214454.3	ILMN_1351243	0004480520	S	1911	CCCGGAAGTAGAAGTAGTTGGAGGGGCTTCTTCACCATCTCACTGTCAGG	17	-	32994523-32994572	17p12	PREDICTED: Rattus norvegicus RIO kinase 1 (yeast) (Riok1), mRNA.			Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648823-S	ILMN_274102	RGD1309821_PREDICTED	XM_001068567.1	XM_001068567.1		366360	109476374	XM_001068567.1	RGD1309821_predicted	XP_001068567.1	ILMN_1349637	0005080091	S	2043	CGGGGATGAAACGGCTCACCGCATTGACTCACAGTTCCTCATCGGGGACA				5q22	PREDICTED: Rattus norvegicus similar to KIAA1161 protein (predicted) (RGD1309821_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34856007-S	ILMN_266098	KLK8	XM_001077419.1	XM_001077419.1		308565	109461805	XM_001077419.1	Klk8	XP_001077419.1	ILMN_1349002	0003520497	S	1226	ACTGGATCAAGAAGACCATGGGCAAGAGGGACTGATCCTGGGGATGGGCG				1q22	PREDICTED: Rattus norvegicus kallikrein 8 (neuropsin/ovasin) (Klk8), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation of a myelin sheath around nerve axons [goid 31642] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon regeneration [goid 48681] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence ISS]; Any process that modulates the physical form of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50807] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647460-S	ILMN_67845	RGD1309766_PREDICTED	XM_232051.4	XM_232051.4		312439	109472178	XM_232051.4	RGD1309766_predicted	XP_232051.4	ILMN_1353149	0005270242	S	3166	GTGGTATGCTAGCCTGGATGGTCTCTCCTGAAATGTTTGCCTAGGAGAGC	4	-	104602921-104602970	4q33	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13910 (predicted) (RGD1309766_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653911-S	ILMN_53486	LOC501022	XM_576431.1	XM_576431.1		501022	62653911	XM_576431.1	LOC501022	XP_576431.1	ILMN_1361294	0006980528	S	273	TCGTGCCTCAGCTGGTGTGTGTAAGGGGACAAAGGTGGCAGTGACTCAGT					PREDICTED: Rattus norvegicus similar to Tropomodulin 3 (predicted) (LOC501022), mRNA.					
Rattus norvegicus	RefSeq	GI_62657454-S	ILMN_65955	SLC26A11_PREDICTED	XM_340944.3	XM_340944.3		360670	109489478	XM_340944.3	Slc26a11_predicted	XP_340945.3	ILMN_1352400	0002030253	S	778	GAAGCATCCCCACCACGTTCTGCGGTTCTGGAGTGCACGCATGTCAGCAA	10	+	108738398-108738401:108738812-108738857	10q32.3	PREDICTED: Rattus norvegicus solute carrier family 26, member 11 (predicted) (Slc26a11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645258-S	ILMN_49836	LOC366083	XM_345374.2	XM_345374.2		366083	62645258	XM_345374.2	LOC366083	XP_345375.2	ILMN_1366815	0006550372	S	3676	GTAGTTTTGTAGTGTCGCATAGAGGCAGTCCTTGAGCTGGTCCGTAGAGG					PREDICTED: Rattus norvegicus similar to Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4) (LOC366083), mRNA.					
Rattus norvegicus	RefSeq	GI_62648586-S	ILMN_289735	LOC366304	XM_001069481.1	XM_001069481.1		366304	109476082	XM_001069481.1	LOC366304	XP_001069481.1	ILMN_1363469	0006550064	S	1428	CCTTGTGTTGCCGGATAGTGTCAACCGCATCTTTGTGGTGTCTGATGGTG					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC366304), mRNA.					
Rattus norvegicus	RefSeq	GI_34866810-S	ILMN_301235	CYP11B1	NM_012537.2	NM_012537.2		500892	77917599	NM_012537.2	Cyp11b1	NP_036669.2	ILMN_1357432	0004210433	S	2532	AGAGCCTCCCAAGAAGAGAGTGAGGTGCCAGGTCACAGAGACAGACCCAA	7	-	112977504-112977553	7q34	Rattus norvegicus cytochrome P450, subfamily 11B, polypeptide 1 (Cyp11b1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IDA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence TAS]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence TAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance [goid 32342] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IEA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O [goid 47783] [evidence ISS]	RATCP11BA; Cp11ba	RATCP11BA; Cp11ba
Rattus norvegicus	RefSeq	GI_62667371-S	ILMN_58713	LOC501641	XM_577038.1	XM_577038.1		501641	62667371	XM_577038.1	LOC501641	XP_577038.1	ILMN_1360808	0003120494	S	720	AGCCAGAAAATGGAAAGAACCCAAATGCCCTTCAACAGAGGAATGGATAC					PREDICTED: Rattus norvegicus similar to Da1-12 (LOC501641), mRNA.					
Rattus norvegicus	RefSeq	GI_27658895-S	ILMN_61205	LOC291934	XM_226382.1	XM_226382.1		291934	27658895	XM_226382.1	LOC291934	XP_226382.1	ILMN_1361798	0006940097	S	62	TGGGAAGAGAGACCTCACAGTGCACCATGGGAAGAGAGACCTCACAGTGC					PREDICTED: Rattus norvegicus similar to HRPII (LOC291934), mRNA.					
Rattus norvegicus	RefSeq	GI_62647030-S	ILMN_263781	ATP6V0A4_PREDICTED	XM_001066202.1	XM_001066202.1		296981	109473275	XM_001066202.1	Atp6v0a4_predicted	XP_001066202.1	ILMN_1366507	0001780397	S	3005	CTGGGAAATGGGGGTGGGGGCTGCACTAGACCGTTATCTTCCTGTGATAG				4q22	PREDICTED: Rattus norvegicus ATPase, H+ transporting, lysosomal V0 subunit A isoform 4 (predicted) (Atp6v0a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647588-S	ILMN_50701	LOC502834	XM_578334.1	XM_578334.1		502834	62647588	XM_578334.1	LOC502834	XP_578334.1	ILMN_1349086	0002680735	S	433	TCTCCTTGGCATCCACTAGGGAAACTGGCTCCACTGGTGACACTGTGCTG				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain VK-1 (LOC502834), mRNA.					
Rattus norvegicus	RefSeq	GI_62663729-S	ILMN_65364	LOC498778	XM_574064.1	XM_574064.1		498778	62663729	XM_574064.1	LOC498778	XP_574064.1	ILMN_1358566	0002030239	S	1676	ACAGGATTCCTACCTGTTTCACAGCCTCCTCGAAGGAGGACAGTCAGGTG					PREDICTED: Rattus norvegicus similar to CG8201-PO, isoform O (LOC498778), mRNA.					
Rattus norvegicus	RefSeq	GI_16758935-S	ILMN_298560	ABCC5	NM_053924.1	NM_053924.1		116721	16758935	NM_053924.1	Abcc5	NP_446376.1	ILMN_1349461	0001780440	S	5394	GCAACAGGGCTCAGGAGTGTGGGGTCCGTTCTTCCTCACTTCAGTCTCCT	11	+	82809004-82809053	11q23	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 5 (Abcc5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Abcc5a; Mrp5	Abcc5a; Mrp5
Rattus norvegicus	RefSeq	GI_62646104-S	ILMN_68528	SNTA1	XM_342548.3	XM_342548.3		362242	109469082	XM_342548.3	Snta1	XP_342549.2	ILMN_1369032	0000940053	S	1748	AGAACTCAGACCTGGGACAGTGAGTCTGGCTTGTGATGGGGCAGCCTTCC	3	-	144843976-144844025	3q41	PREDICTED: Rattus norvegicus syntrophin, acidic 1 (Snta1), mRNA.	The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]	The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_47058979-S	ILMN_282019	KIF5A	NM_212523.1	NM_212523.1		314906	47058979	NM_212523.1	Kif5a	NP_997688.1	ILMN_1357850	0001400066	S	3232	AGGACCCAGCCAAGCTTTTCCCTCTCCACCAAGAGACGGCAGCCAGCTAA	7	-	67188345-67188345:67188346-67188394	7q22	Rattus norvegicus kinesin family member 5A (Kif5a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence TAS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm [goid 35253] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence TAS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence TAS]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659293-S	ILMN_270699	SLC41A1_PREDICTED	XM_001059484.1	XM_001059484.1		363985	109498610	XM_001059484.1	Slc41a1_predicted	XP_001059484.1	ILMN_1356727	0006290121	S	1217	AGTTCGGGAGGAGGACGCACTGCTGGAGAATGGGAGCCAGAGCAATGAGA				13q13	PREDICTED: Rattus norvegicus solute carrier family 41, member 1 (predicted) (Slc41a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659291-S	ILMN_270699	SLC41A1_PREDICTED	XM_001059484.1	XM_001059484.1		363985	109498610	XM_001059484.1	Slc41a1_predicted	XP_001059484.1	ILMN_1370460	0003440170	S	85	TTGGACAAGAGTGTTCGGCTGTGGGTGGCAAACGTGATCTGGGGCAGAGC				13q13	PREDICTED: Rattus norvegicus solute carrier family 41, member 1 (predicted) (Slc41a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655763-S	ILMN_287982	RGD1561157_PREDICTED	XM_001056166.1	XM_001056166.1		360487	109490269	XM_001056166.1	RGD1561157_predicted	XP_001056166.1	ILMN_1353328	0006370152	S	474	TCAGCCTTGGGTCTGGAGTCCCCCATGTTCCAGAGGAGGTGGCTGTGTCT				10q12	PREDICTED: Rattus norvegicus RGD1561157 (predicted) (RGD1561157_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527424-S	ILMN_284251	THRAP3	NM_001009693.1	NM_001009693.1		313591	57527424	NM_001009693.1	Thrap3	NP_001009693.1	ILMN_1355656	0002970372	S	3179	AGGACGCTGCCACCGAGCCTACATCAGGCCCATGTTTCCAGCAGAGCACA	5	-	145522621-145522670	5q36	Rattus norvegicus thyroid hormone receptor associated protein 3 (Thrap3), mRNA.	A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence ISS]; A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence ISS]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]	MGC94882	MGC94882
Rattus norvegicus	RefSeq	GI_34855332-S	ILMN_270592	RGD1564862_PREDICTED	XM_001068393.1	XM_001068393.1		361519	109461368	XM_001068393.1	RGD1564862_predicted	XP_001068393.1	ILMN_1372727	0001400017	S	1070	GGGGTCCCACCCGTCTGTGTCGTCTTAGCAGTAGATGTGTGAAGGGCTGA				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC51082 (predicted) (RGD1564862_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663470-S	ILMN_56885	LOC498737	XM_574014.1	XM_574014.1		498737	62663470	XM_574014.1	LOC498737	XP_574014.1	ILMN_1361498	0000130672	S	288	GCCAGAGTCACCTCTTCAACACCACAGAAGTGTGGCATTCCTGGACTGGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L13 (LOC498737), mRNA.					
Rattus norvegicus	RefSeq	GI_62653238-S	ILMN_65777	AMOTL1_PREDICTED	XM_235827.4	XM_235827.4		315430	109483081	XM_235827.4	Amotl1_predicted	XP_235827.4	ILMN_1351525	0004210133	S	2640	ACGCCAAGACAGGCAGCAAGGACAGCAGCACGCAGACCGACAAGATCACT	8	-	11297728-11297777	8q11	PREDICTED: Rattus norvegicus angiomotin-like 1 (predicted) (Amotl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638477-S	ILMN_302150	SYNE1	NM_001029909.1	NM_001029909.1		499010	71480172	NM_001029909.1	Syne1	NP_001025080.1	ILMN_1374793	0001400068	S	27310	CCATGCCTTGACCTGGAGTCTGGCCTTGTGTTTGATCTTGCACTGCTCCA	1	-	35809704-35809753	1p11	Rattus norvegicus spectrin repeat containing, nuclear envelope 1 (Syne1), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a muscle cell [goid 42692] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope [goid 5521] [evidence ISS]	Syne1; Myne-1	Syne1; Myne-1
Rattus norvegicus	RefSeq	GI_6978538-S	ILMN_277388	ARRB2	NM_012911.1	NM_012911.1		25388	6978538	NM_012911.1	Arrb2	NP_037043.1	ILMN_1370634	0007040021	S	1416	TTCTGCTAGGAAGAGGGGCTGGGAGAGGTAGGGGTGGGCAGGACTGAGGT	10	+	57283949-57283998	10q24	Rattus norvegicus arrestin, beta 2 (Arrb2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence ISS]; The process that inhibits the signaling function of a G-protein coupled receptor by uncoupling the receptor from its downstream G proteins [goid 2032] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 7600] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30817] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30820] [evidence TAS]; The process by which cell surface receptors are monoubiquitinated following ligand-induced activation, and subsequently taken up into endocytic vesicles and targeted to the lysosome or vacuole for degradation; serves as a mechanism to downregulate receptor signaling [goid 31623] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence TAS]	2; MGC105502; BARRES	2; MGC105502; BARRES
Rattus norvegicus	RefSeq	GI_62643533	ILMN_300542	VEPH1	NM_001014171.1	NM_001014171.1		361954	62079074	NM_001014171.1	Veph1	NP_001014193.1	ILMN_1650725	0003990440	S	2287	CTTCAGCGAAACAGCAGGGGCATGGCAATGCTTCATGTGTAACAACCCCG	2	-	155914412-155914461	2q31	Rattus norvegicus ventricular zone expressed PH domain homolog 1 (zebrafish) (Veph1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]			RGD1308217	RGD1308217
Rattus norvegicus	RefSeq	GI_12831204-S	ILMN_297266	EPAS1	NM_023090.1	NM_023090.1		29452	12831204	NM_023090.1	Epas1	NP_075578.1	ILMN_1362282	0006860093	S	2569	TGCTGGGGCCATCGTTCGAGCCTTACCTGCTGCCGGAACTGACCAGATAT	6	+	10297051-10297100	6q12	Rattus norvegicus endothelial PAS domain protein 1 (Epas1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISO]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISO]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IGI]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IMP]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence IMP]; Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IGI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IMP]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IMP]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IMP]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IGI]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IMP]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42415] [evidence IMP]; The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42415] [evidence ISS]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence IMP]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence ISS]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence ISS]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence IDA]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence ISS]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence IMP]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence IGI]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IGI]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IGI]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISO]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IMP]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISO]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IGI]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISO]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence ISS]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]	Hif2a; HLF	Hif2a; HLF
Rattus norvegicus	RefSeq	GI_62648854-S	ILMN_67150	RGD1310681_PREDICTED	XM_216357.4	XM_216357.4		297903	109474675	XM_216357.4	RGD1310681_predicted	XP_216357.3	ILMN_1356377	0000580390	S	1012	CAGAGACCACTGTCAACTAAGTGCACATCTGGAACTGGACAGGTAGCCAC	5	-	26402461-26402469:26403648-26403688	5q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6720467C03 (predicted) (RGD1310681_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655447-S	ILMN_280276	CSPRS_PREDICTED	XM_237360.3	XM_237360.3		316579	62655447	XM_237360.3	Csprs_predicted	XP_237360.3	ILMN_1368355	0003940053	S	849	ACACGTGATACCCACCCTGATCTTTGTAGGTTTGGGAAAACGGTGCGGGG	9	+	84230429-84230478	9q35	PREDICTED: Rattus norvegicus component of Sp100-rs (predicted) (Csprs_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662730	ILMN_55880	RGD1560302_PREDICTED	XM_577520.2	XM_577520.2		364590	109503371	XM_577520.2	RGD1560302_predicted	XP_577520.2	ILMN_1650674	0003130332	S	80	TCGACCATACGGTAGACCTCAGCTGCTTGGTGTTCCAAGAAGACGCCCAG	16	+	47844268-47844317	16q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700018B24 (predicted) (RGD1560302_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642225-S	ILMN_266650	CEP55	NM_001025646.1	NM_001025646.1		294074	71043815	NM_001025646.1	Cep55	NP_001020817.1	ILMN_1370970	0003780048	S	1348	CCTTCACAGAGCAGCCGTTCCCACTCCAGGGAGAGCCTGAAAACAGAGTG	1	+	242397174-242397223	1q53	Rattus norvegicus centrosomal protein 55kDa (Cep55), mRNA.		The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]		MGC116160; RGD1305340	MGC116160; RGD1305340
Rattus norvegicus	RefSeq	GI_56090368-S	ILMN_294264	TMX2	NM_001007643.1	NM_001007643.1		295701	56090368	NM_001007643.1	Tmx2	NP_001007644.1	ILMN_1352021	0006760082	S	1499	GGGCTGTTCTGCCCTGGCCAACTGTTCCTCGAAGGGAGTAATCTCATGGA	3	-	67880789-67880838	3q24	Rattus norvegicus thioredoxin-related transmembrane protein 2 (Tmx2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]		MGC94529	MGC94529
Rattus norvegicus	RefSeq	GI_62643710	ILMN_61062	RGD1565007_PREDICTED	XM_345227.3	XM_345227.3		365834	109465006	XM_345227.3	RGD1565007_predicted	XP_345228.3	ILMN_1650803	0001170471	S	1221	GGAGTTTTGTAATGCAGTCATCCAGGTCGCTCACCCCCTGATCCGCACGC	2	-	177632575-177632600:177634485-177634508	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632419K20 (predicted) (RGD1565007_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34864394-S	ILMN_66397	OLR385_PREDICTED	XM_220088.3	XM_220088.3		294109	109460258	XM_220088.3	Olr385_predicted	XP_220088.3	ILMN_1361566	0003170300	S	397	GACCGCTACATTGCCATTTGTTACCCCCTGAGATATAGCACCGTTCTCAC	1	+	258063510-258063559	1q55	PREDICTED: Rattus norvegicus olfactory receptor 385 (predicted) (Olr385_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643284-A	ILMN_265219	GFM1	NM_053625.1	NM_053625.1		114017	16758431	NM_053625.1	Gfm1	NP_446077.1	ILMN_1376764	0001190082	S	2103	TCGCCCCAAATGAGTTTCAGGGAGCAGTGTTTGCAGGAATTAACCGGCGC	2	+	157326375-157326424	2q31	Rattus norvegicus G elongation factor, mitochondrial 1 (Gfm1), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Efg; MGC93294; EF-G	Efg; MGC93294; EF-G
Rattus norvegicus	RefSeq	GI_62660111-S	ILMN_288974	RGD1564709_PREDICTED	XM_001064705.1	XM_001064705.1		305142	109500285	XM_001064705.1	RGD1564709_predicted	XP_001064705.1	ILMN_1360371	0004560504	S	1596	CGTTAGGAGCTGGAGAGAACACAGCTGCTCTACCAACGACTCTCATAACC				14p22	PREDICTED: Rattus norvegicus similar to ATP-binding cassette, sub-family G (WHITE), member 3 (predicted) (RGD1564709_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665596-S	ILMN_275942	MDC1	XM_001072849.1	XM_001072849.1		309595	109509685	XM_001072849.1	Mdc1	XP_001072849.1	ILMN_1352669	0005290451	S	3716	GCCGGGCTCGGGAACGAAGACTACTGGAGGACTATGAGATTCATGTGACC				20p12	PREDICTED: Rattus norvegicus mediator of DNA damage checkpoint 1 (Mdc1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981123-S	ILMN_300989	KCNE1	NM_012973.1	NM_012973.1		25471	6981123	NM_012973.1	Kcne1	NP_037105.1	ILMN_1356052	0006840086	S	264	CCGATCCAAGAAGCTGGAACACTCGCACGACCCTTTCAACGTGTACATCG	11	-	32344800-32344849	11q11	Rattus norvegicus potassium voltage-gated channel, Isk-related subfamily, member 1 (Kcne1), mRNA.	A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2070] [evidence IEA]; The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2070] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IMP];  [goid 5251] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Isk	Isk
Rattus norvegicus	RefSeq	GI_62657902-S	ILMN_271146	LOC498084	XM_001068800.1	XM_001068800.1		498084	109494409	XM_001068800.1	LOC498084	XP_001068800.1	ILMN_1351940	0000130286	S	1070	GGAGTCCAGGGGAATGATGGAGCCCAACTACAAACCAAGTACAGTCTGCA				11q21	PREDICTED: Rattus norvegicus Ab2-093 (LOC498084), mRNA.					
Rattus norvegicus	RefSeq	GI_62664038-S	ILMN_52657	LOC498821	XM_574102.1	XM_574102.1		498821	62664038	XM_574102.1	LOC498821	XP_574102.1	ILMN_1369606	0001090546	S	315	GACAACAAGGTGGGAGTTGAGAAGCTTCTGGCACAGGGGGATGATGCTGG				18p13	PREDICTED: Rattus norvegicus similar to ribosomal protein (LOC498821), mRNA.					
Rattus norvegicus	RefSeq	GI_62661052	ILMN_54748	LOC364248	XM_344293.2	XM_344293.2		364248	62661052	XM_344293.2	LOC364248	XP_344294.2	ILMN_1651140	0006860594	S	806	GGAGGAAAGTCTGCAGGACGCCCTGAATCAGAAAAAACTGGCCACTGAGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F09 (LOC364248), mRNA.					
Rattus norvegicus	RefSeq	GI_62661233-A	ILMN_265312	ERO1L	NM_138528.1	NM_138528.1		171562	19924060	NM_138528.1	Ero1l	NP_612537.1	ILMN_1376500	0007000086	S	1808	CAGGCTCTCCAGCTAGAGTTGTGTTTGAGAAGCTGTAATAGCCACGAGGC	15	-	21169905-21169954	15p14	Rattus norvegicus ERO1-like (S. cerevisiae) (Ero1l), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; Oxidation of two organic sulfhydryl groups (thiols) by a disulfide compound to form a disulfide bond [goid 6467] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide [goid 16671] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928779-S	ILMN_271041	POR	NM_031576.1	NM_031576.1		29441	13928779	NM_031576.1	Por	NP_113764.1	ILMN_1358080	0002320008	S	2263	CACATGGCAAGAGGGACTGGACCCACCTTTGGGTGATGGGTGCCTTAGGT	12	-	22078736-22078785	12q12	Rattus norvegicus P450 (cytochrome) oxidoreductase (Por), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein [goid 3958] [evidence IDA]; Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein [goid 3958] [evidence IMP]; Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein [goid 3958] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IMP]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IMP]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IMP]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IMP]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_56090362-S	ILMN_296736	TEX264	NM_001007665.1	NM_001007665.1		300988	56090362	NM_001007665.1	Tex264	NP_001007666.1	ILMN_1352331	0006040632	S	1364	TATCTGCACCAGCCTCCTGGGCTGCCGACCTTGCAGACTCTTATTGGAGC	8	-	111852838-111852887	8q32	Rattus norvegicus testis expressed 264 (Tex264), mRNA.				MGC94635	MGC94635
Rattus norvegicus	RefSeq	GI_62639474-S	ILMN_56923	LOC502322	XM_577787.1	XM_577787.1		502322	62639474	XM_577787.1	LOC502322	XP_577787.1	ILMN_1372582	0003710592	S	282	CCACGGCAACACCCCCAAAAGAAGGAGTTCCAGTTTGCCAATCAGAGAGC					PREDICTED: Rattus norvegicus similar to Ribosomal protein L27 (LOC502322), mRNA.					
Rattus norvegicus	RefSeq	GI_62648542-S	ILMN_51815	LOC500391	XM_575750.1	XM_575750.1		500391	62648542	XM_575750.1	LOC500391	XP_575750.1	ILMN_1360050	0000430364	S	1034	TGACAGGCCACATGGGAGCAGACAATGTGCGGATGAGGAAGGCGTCTCAG					PREDICTED: Rattus norvegicus LOC500391 (LOC500391), mRNA.					
Rattus norvegicus	RefSeq	GI_62644804-S	ILMN_49679	LOC296599	XM_216020.3	XM_216020.3		296599	62644804	XM_216020.3	LOC296599	XP_216020.2	ILMN_1372487	0006660632	S	1092	CAGTGCTAGGAAGTGTATGTGCGTGTCTGTCTACGGAGTGATGTGTGGGC				3p12	PREDICTED: Rattus norvegicus similar to chromosome 9 open reading frame 7 (predicted) (LOC296599), mRNA.					
Rattus norvegicus	RefSeq	GI_62639139-S	ILMN_62654	LOC292708	XM_218444.3	XM_218444.3		292708	62639139	XM_218444.3	LOC292708	XP_218444.3	ILMN_1374739	0002640398	S	2346	GAGAAGGGACAGGGAGGGTCTGGGTAAGGTAGTCTTCCGATGGTCAGAGC				1q21	PREDICTED: Rattus norvegicus similar to FKSG27 (predicted) (LOC292708), mRNA.					
Rattus norvegicus	RefSeq	GI_56606085-S	ILMN_281824	RGD1310553	NM_001008517.1	NM_001008517.1		301374	56606085	NM_001008517.1	RGD1310553	NP_001008517.1	ILMN_1373668	0006550577	S	3015	CCAGACACTTGGAAGAGTGGCTCGCTACTACCATAGGCTGTGTTTGCTGG	9	+	42312279-42312328	9q22	Rattus norvegicus similar to expressed sequence AI597479 (RGD1310553), mRNA.				MGC105902	MGC105902
Rattus norvegicus	RefSeq	GI_62641428-S	ILMN_62747	RGD1310717_PREDICTED	XM_219041.3	XM_219041.3		293288	109459172	XM_219041.3	RGD1310717_predicted	XP_219041.2	ILMN_1375092	0001990592	S	1248	TGCTTATGACACGACCACTGGGCAGGAACACCACCTCAGCATCCTGTTGG	1	-	161990729-161990778	1q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E030002O03 (predicted) (RGD1310717_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741509-S	ILMN_288784	CNOT10	NM_001007003.1	NM_001007003.1		316034	55741509	NM_001007003.1	Cnot10	NP_001007004.1	ILMN_1366979	0001240504	S	2426	GGAAAGGCAGTAGAGGAAATACAGTGGCAACAGTGCTGGCCGGAAGGCGG	8	-	119007352-119007401	8q32	Rattus norvegicus CCR4-NOT transcription complex, subunit 10 (Cnot10), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94752	MGC94752
Rattus norvegicus	RefSeq	GI_62645763-S	ILMN_285682	RGD1566077_PREDICTED	XM_001076825.1	XM_001076825.1		311358	109470520	XM_001076825.1	RGD1566077_predicted	XP_001076825.1	ILMN_1371323	0004850541	S	1290	GCCTGGCCAGAATAAAATGGAACCACAAATACCGGATGCATCAGTAGCAG				3q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A130038L21 (predicted) (RGD1566077_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664017-S	ILMN_51576	LOC291802	XM_226183.3	XM_226183.3		291802	62664017	XM_226183.3	LOC291802	XP_226183.3	ILMN_1372280	0003060019	S	666	CTGGCCAGAGATCACCAGTACCAAGCCTTTGGTCACATCAAATGTAACAG				18p13	PREDICTED: Rattus norvegicus similar to zinc finger protein 124 (LOC291802), mRNA.					
Rattus norvegicus	RefSeq	GI_62665213-S	ILMN_267152	TMED6_PREDICTED	XM_001076527.1	XM_001076527.1		291991	109508839	XM_001076527.1	Tmed6_predicted	XP_001076527.1	ILMN_1364431	0000770575	S	508	CTGGACGCCATAGAGGACAGTACCCGGAGGGTGCAGAACCACGTTTTCCA				19q12	PREDICTED: Rattus norvegicus transmembrane emp24 protein transport domain containing 6 (predicted) (Tmed6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638604	ILMN_57913	LOC365110	XM_344820.2	XM_344820.2		365110	62638604	XM_344820.2	LOC365110	XP_344821.2	ILMN_1650928	0005910131	S	2066	TCAGTTCCCCTGTGTTTGTTGGGTGCCACGGCTTTGTGCATTCTGGTTGC					PREDICTED: Rattus norvegicus similar to Afadin (Af-6 protein) (LOC365110), mRNA.					
Rattus norvegicus	RefSeq	GI_16758793-S	ILMN_64245	PSCD3	NM_053912.2	NM_053912.2		116693	77020265	NM_053912.2	Pscd3	NP_446364.2	ILMN_1355570	0004010497	S	1260	GTAGGGACCCGTTCTATGACATGCTGGCCACAAGGAAGAGGAGGATTGCC	12	-	11171584-11171633	12p11	Rattus norvegicus pleckstrin homology, Sec7 and coiled-coil domains 3 (Pscd3), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phosphatidylinositol-3,4,5-triphosphate, the triphosphorylated derivative of phosphatidylinositol [goid 5547] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]	MGC124579; Sec7C; Sec7	MGC124579; Sec7C; Sec7
Rattus norvegicus	RefSeq	GI_54262160-S	ILMN_288409	PSMA6	NM_017283.2	NM_017283.2		29673	54262160	NM_017283.2	Psma6	NP_058979.1	ILMN_1370284	0001050072	S	794	GAGAGACTGAACACTCTTATCAGCTTACCAGATCCATGATGCCATGTGCC	6	+	75667235-75667243:75667244-75667284	6q23	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 6 (Psma6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC72876	MGC72876
Rattus norvegicus	RefSeq	GI_62648419-S	ILMN_275363	LOC684059	XM_001068718.1	XM_001068718.1		684059	109474339	XM_001068718.1	LOC684059	XP_001068718.1	ILMN_1368444	0006450487	S	383	CCAGCGGAGGAAACTCTAAGCTGCAACAATAACTGCAGCACCATGCAATG					PREDICTED: Rattus norvegicus similar to immunoreceptor Ly49si1 (LOC684059), mRNA.					
Rattus norvegicus	RefSeq	GI_62659526-S	ILMN_55023	LOC498254	XM_573478.1	XM_573478.1		498254	62659526	XM_573478.1	LOC498254	XP_573478.1	ILMN_1351374	0006400142	S	410	GCTGAGCACCAGAGCTGTCAGAATTTCCCTCAGAAGTCTCACCTTAGAGG					PREDICTED: Rattus norvegicus similar to Dendritic cell protein GA17 (LOC498254), mRNA.					
Rattus norvegicus	RefSeq	GI_62641316-S	ILMN_268746	ITGAL	NM_001033998.1	NM_001033998.1		308995	77404268	NM_001033998.1	Itgal	NP_001029170.1	ILMN_1349131	0002060010	S	4014	TTAGAAGGCCTTATGAAGTCAGGCCCCAGTGGCCCCCAGCCTCTGCTGAG	1	+	186598561-186598610	1q36	Rattus norvegicus integrin alpha L (Itgal), mRNA.	An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence IEA]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell [goid 22407] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence IEA]; Any process that activates or increases the rate or extent of cell adhesion to another cell [goid 22409] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence IEA]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62660840-S	ILMN_267746	RGD1560957_PREDICTED	XM_001058183.1	XM_001058183.1		498420	109501051	XM_001058183.1	RGD1560957_predicted	XP_001058183.1	ILMN_1361135	0005130519	S	809	AGCAAGTGGAGGGAGACAGCAGAATATCTCTGGGAAAGGGGCAAGACAGC				14q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730466H23 (predicted) (RGD1560957_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645347-S	ILMN_54348	CTNND1_PREDICTED	XM_242062.4	XM_242062.4		311163	109468363	XM_242062.4	Ctnnd1_predicted	XP_242062.4	ILMN_1359727	0004780451	S	4641	CCTGGTGCTCTTTCTTCTCGGTGGGTGTGGGTGATAGAATAGCCATGGGC	3	-	67809285-67809334	3q24	PREDICTED: Rattus norvegicus catenin (cadherin associated protein), delta 1 (predicted) (Ctnnd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18093099-S	ILMN_288416	PLCD4	NM_080688.1	NM_080688.1		140693	18093099	NM_080688.1	Plcd4	NP_542419.1	ILMN_1366004	0000070463	S	2516	CCTACAACTTCCTCAGCATCCAGAGCCAGCCAAAGGATCAGTGGCGGACC	9	+	73904948-73904997	9q33	Rattus norvegicus phospholipase C, delta 4 (Plcd4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IDA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642441-S	ILMN_286147	RGD1564891_PREDICTED	XM_001059715.1	XM_001059715.1		499367	109463965	XM_001059715.1	RGD1564891_predicted	XP_001059715.1	ILMN_1368508	0000510411	S	812	CCAGAACTACAGCCACAGAGGCCATCCAAAGTCCCTCCGACAGGACCGAA				1q54	PREDICTED: Rattus norvegicus similar to OTTHUMP00000059165 (predicted) (RGD1564891_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648268-S	ILMN_280397	RGD1306151_PREDICTED	XM_001071978.1	XM_001071978.1		362455	109474400	XM_001071978.1	RGD1306151_predicted	XP_001071978.1	ILMN_1362757	0001660093	S	2080	AGTTGGAGCTGTGAGACGTAGCGTGGTCCGCTTAGCTGGGGAGTCTCGAA				4q43	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp761D0211 (predicted) (RGD1306151_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718052-S	ILMN_267563	FEM1A	NM_001025706.1	NM_001025706.1		316131	71043895	NM_001025706.1	Fem1a	NP_001020877.1	ILMN_1363936	0003360735	S	1697	CGTGTGGGCATCTTCCCGTCGTTGCAGGTGGTGAAGGTACTGTTGGACTG	Un|NW_047865.1	-	813852-813901		Rattus norvegicus feminization 1 homolog a (C. elegans) (Fem1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that modulates the frequency, rate or extent of ubiquitin ligase activity, the catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 51438] [evidence ISS]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]	MGC114562	MGC114562
Rattus norvegicus	RefSeq	GI_18959263-S	ILMN_69468	TOB1	NM_133317.2	NM_133317.2		170842	82617613	NM_133317.2	Tob1	NP_579851.2	ILMN_1372513	0002450494	S	1073	ATGGAATGTTCCCAGGTGACAGCCCCCTTAACCTCAGTCCCCTCCAGTAC	10	+	82853477-82853526	10q26	Rattus norvegicus transducer of ErbB-2.1 (Tob1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	 [goid 7184] [evidence ISS];  [goid 7184] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence IEA]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_14091771-S	ILMN_280101	PNLIPRP1	NM_032081.1	NM_032081.1		84028	14091771	NM_032081.1	Pnliprp1	NP_114470.1	ILMN_1361342	0006900300	S	1356	CTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGAGAGGAGC	1	+	265250443-265250492	1q55	Rattus norvegicus pancreatic lipase related protein 1 (Pnliprp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577224-S	ILMN_269249	OLR372	NM_001001048.1	NM_001001048.1		405934	47577224	NM_001001048.1	Olr372	NP_001001048.1	ILMN_1373450	0006900072	S	579	TATCCATGAGCTCTCTGTGCTAGTGGCAGCCACAATAGCCATTGCCGTGC	1	+	216770939-216770988	1q43	Rattus norvegicus olfactory receptor 372 (Olr372), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr372	Olr372
Rattus norvegicus	RefSeq	GI_56912232-A	ILMN_281666	KRT14	NM_001008751.1	NM_001008751.1		287701	56912232	NM_001008751.1	Krt14	NP_001008751.1	ILMN_1376580	0005720093	S	1345	CAATCATCCAGAGATGTGACCTCCACCAACCGCCAGATCCGCACCAAGGT	10	-	89144420-89144454:89145072-89145086	10q32.1	Rattus norvegicus keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, Koebner) (Krt14), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence ISS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IDA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IDA]; The formation of the bundles of intermediate filaments, known as tonofilaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs [goid 45110] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ka14	Ka14
Rattus norvegicus	RefSeq	GI_62649531-S	ILMN_297177	MED8_PREDICTED	XM_001072348.1	XM_001072348.1		362575	109477095	XM_001072348.1	Med8_predicted	XP_001072348.1	ILMN_1373698	0000510132	S	668	TCCTTGCAGGAGCCTCAGGATTGCAGCAGGTTCAGATGGCAGGTGCTCCA				5q36	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) (predicted) (Med8_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.24326	ILMN_161087	RN.24326	Rn.24326		Rn.24326		3812324	AI228437			ILMN_1530266	0006220088	S	146	CATGCTAGAAAAAATGGGATGCAGTTAAAAAATCTAAGAACAGTTAAAAG					EST225132 Normalized rat brain, Bento Soares Rattus sp. cDNA clone RBRCU78 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_6978885-S	ILMN_279296	GFI1	NM_012566.1	NM_012566.1		24388	6978885	NM_012566.1	Gfi1	NP_036698.1	ILMN_1374307	0002690687	S	2249	GGTGTGGAGCAAAGGCTGTGGCCTCAACTGCCGCCCCTTATCATCTAGGA	14	+	2606522-2606571	14p22	Rattus norvegicus growth factor independent 1 transcription repressor (Gfi1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Behavior that is dependent upon the sensation of a mechanical stimulus [goid 7638] [evidence ISS]; Behavior that is dependent upon the sensation of a mechanical stimulus [goid 7638] [evidence IEA]; Any process that restricts, stops or prevents a cell from adopting a specific cell fate [goid 9996] [evidence ISS]; Any process that restricts, stops or prevents a cell from adopting a specific cell fate [goid 9996] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; Any process that activates or enables a cell to adopt a specific fate [goid 42660] [evidence ISS]; Any process that activates or enables a cell to adopt a specific fate [goid 42660] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642300-S	ILMN_58015	LOC361754	XM_577864.1	XM_577864.1		361754	62642300	XM_577864.1	LOC361754	XP_577864.1	ILMN_1358622	0006450538	S	23	CACATTTTTACAGAGTTCTGGGAGAGGGAAGATTCCTCCTGGCCCCACCC					PREDICTED: Rattus norvegicus similar to cytochrome P450 2C7 - rat (LOC361754), mRNA.					
Rattus norvegicus	RefSeq	GI_62646176-S	ILMN_287602	RGD1564873_PREDICTED	XM_001057611.1	XM_001057611.1		502679	109470978	XM_001057611.1	RGD1564873_predicted	XP_001057611.1	ILMN_1363244	0005670156	S	66	CGAAGCCTGGGGCTCACCAACGATTGTAAGGCCATTTGAAGACATCCCCA				3q41	PREDICTED: Rattus norvegicus similar to cystatin T (predicted) (RGD1564873_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741423-S	ILMN_291394	NDUFV1	NM_001006972.1	NM_001006972.1		293655	55741423	NM_001006972.1	Ndufv1	NP_001006973.1	ILMN_1365082	0006200113	S	1163	CGTGCCGGGAGGGCGTTGATTGGATGAACAAGGTGATGGCCCGATTTGTG	1	-	206590375-206590413:206590546-206590556	1q42	Rattus norvegicus NADH dehydrogenase (ubiquinone) flavoprotein 1 (Ndufv1), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone [goid 5747] [evidence IEA]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone [goid 5747] [evidence ISS]	The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I [goid 6120] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16651] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]	MGC94599	MGC94599
Rattus norvegicus	RefSeq	GI_62664540-S	ILMN_63411	ZNF532_PREDICTED	XM_225923.3	XM_225923.3		307362	62664540	XM_225923.3	Znf532_predicted	XP_225923.3	ILMN_1360861	0004610538	S	5914	ACTGTAGTCCACGTTCAGTTCCCTGAAAGGTCTTGCTGCTGTTGGTGCGC				18q12.1	PREDICTED: Rattus norvegicus zinc finger protein 532 (predicted) (Znf532_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656725-S	ILMN_278359	RGD1311564_PREDICTED	XM_001070382.1	XM_001070382.1		360590	109502208	XM_001070382.1	RGD1311564_predicted	XP_001070382.1	ILMN_1361242	0000770053	S	976	CAGTGGCATGAGGACCAGAAAAGGGGAACCTGAGAGTCCTGGGATTGGGG				10q26	PREDICTED: Rattus norvegicus LOC360590 (predicted) (RGD1311564_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645050	ILMN_62047	LOC499791	XM_575126.1	XM_575126.1		499791	62645050	XM_575126.1	LOC499791	XP_575126.1	ILMN_1650337	0000780021	S	164	GGGGGCGCTTCAGCCCTTGGGCCACACATTTTTTGAGCTGTTTGCAAAAG					PREDICTED: Rattus norvegicus similar to cyclophilin-33 (LOC499791), mRNA.					
Rattus norvegicus	RefSeq	GI_42476146-S	ILMN_291362	PCP4	NM_013002.2	NM_013002.2		25510	42476146	NM_013002.2	Pcp4	NP_037134.1	ILMN_1357041	0004210162	S	320	ACCCTAGAGCAAAGTCATCCACACCCAGTACACTCTCCGCTGCTAACCTG	11	+	36889189-36889238	11q12	Rattus norvegicus Purkinje cell protein 4 (Pcp4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	pep-19; PEPZ19	pep-19; PEPZ19
Rattus norvegicus	RefSeq	GI_62655885	ILMN_270006	JMJD8	NM_001014116.1	NM_001014116.1		360498	62078960	NM_001014116.1	Jmjd8	NP_001014138.1	ILMN_1650385	0003360368	S	775	TCCACTGGCATGGGCCTGGTTTCTCAGAGGTTATCTATGGTCGGAAGCGC	10	+	15095686-15095732:15095812-15095814	10q12	Rattus norvegicus jumonji domain containing 8 (Jmjd8), mRNA.					
Rattus norvegicus	RefSeq	GI_17865338-S	ILMN_283956	SLC25A14	NM_053501.1	NM_053501.1		85263	17865338	NM_053501.1	Slc25a14	NP_445953.1	ILMN_1364539	0003610148	S	314	ACTGGAAACCTTTTGTGTATGGCGGCCTTGCCTCTATTGTTGCCGAGTTC	X	+	135040707-135040756	Xq35	Rattus norvegicus solute carrier family 25 (mitochondrial carrier, brain), member 14 (Slc25a14), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Bmcp1	Bmcp1
Rattus norvegicus	RefSeq	GI_51948507-S	ILMN_286365	JAM3	NM_001004269.1	NM_001004269.1		315509	51948507	NM_001004269.1	Jam3	NP_001004269.1	ILMN_1374902	0005670619	S	1435	CAGAAAGGTGAAACTGCTTGCTGGGAAGAGGGTTCTTGCCTAAGGAACTC	8	-	26697524-26697573	8q13	Rattus norvegicus junctional adhesion molecule 3 (Jam3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94974	MGC94974
Rattus norvegicus	RefSeq	GI_62661615-S	ILMN_292300	BLK	NM_001025751.1	NM_001025751.1		364403	71043711	NM_001025751.1	Blk	NP_001020922.1	ILMN_1349072	0002810609	S	2009	CCAGGAGACAAGGGTGGCTTCGTGGTGGGGCATGGACTCTCAAGGTACAA	15	-	42644078-42644127	15p12	Rattus norvegicus B lymphoid tyrosine kinase (Blk), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112647	MGC112647
Rattus norvegicus	RefSeq	GI_26023948-S	ILMN_293518	ENO2	NM_139325.1	NM_139325.1		24334	26023948	NM_139325.1	Eno2	NP_647541.1	ILMN_1367920	0001190121	S	2068	GGTGCACTAACTGAAGCTCGGTACTTTACAGAATGGGGCTGTGTACCCGG	4	-	160890323-160890372	4q42	Rattus norvegicus enolase 2, gamma (Eno2), mRNA.	A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water [goid 15] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O [goid 4634] [evidence TAS]; Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O [goid 4634] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	RNEN3; NSE	RNEN3; NSE
Rattus norvegicus	RefSeq	GI_62655104-S	ILMN_66140	RGD1559449_PREDICTED	XM_576572.2	XM_576572.2		501146	109486130	XM_576572.2	RGD1559449_predicted	XP_576572.1	ILMN_1372729	0006450435	S	1813	CGACCAACGTCAGTTATGCCCAGCTCAGCCAGTGTTGGCTCTCCTTTCCC	9	+	57559272-57559321	9q31	PREDICTED: Rattus norvegicus similar to polyploidy associated protein kinase PAPK-A (predicted) (RGD1559449_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018567-S	ILMN_294423	TUBB2C	NM_199094.1	NM_199094.1		296554	40018567	NM_199094.1	Tubb2c	NP_954525.1	ILMN_1352772	0005550398	S	1400	GGTGGCTTAGAGCTGTCTTAGTCACTACAGCATGGGAGCAGTGTGAACTC	3	-	3387151-3387193:3387194-3387200	3p13	Rattus norvegicus tubulin, beta 2c (Tubb2c), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]	Tubb2; MGC73008	Tubb2; MGC73008
Rattus norvegicus	RefSeq	GI_62665718-S	ILMN_289327	DEF6_PREDICTED	XM_001078315.1	XM_001078315.1		309642	109509834	XM_001078315.1	Def6_predicted	XP_001078315.1	ILMN_1374089	0002120113	S	1933	GGATGCAGCGCCAGAAAATTAGCCTCCGATGAGACCCCCTTGTTCTTCCG				20p12	PREDICTED: Rattus norvegicus differentially expressed in FDCP 6 (predicted) (Def6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654952-S	ILMN_64637	RNF149	XM_343561.3	XM_343561.3		363222	109485970	XM_343561.3	Rnf149	XP_343562.3	ILMN_1372230	0005360026	S	2192	CCTTCTTTCCTATTTGATGTTCCCACAGGTGACGTCTTTGAGGACTGTCG	9	-	38623319-38623368	9q21	PREDICTED: Rattus norvegicus ring finger protein 149 (Rnf149), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_38454219-S	ILMN_267925	HLA-DMA	NM_198741.1	NM_198741.1		294274	38454219	NM_198741.1	Hla-dma	NP_942036.1	ILMN_2039346	0005910202	S	611	CGACCTTTACTCCTGCACTGTGACGCACGAGATTGACCGCTACACGGCAA	20	-	4844381-4844430	20p12	Rattus norvegicus major histocompatibility complex, class II, DM alpha (Hla-dma), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence IEA]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	The process by which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex [goid 2504] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence IEA]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence ISS]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RT1.DMa; RT1-DMa	RT1.DMa; RT1-DMa
Rattus norvegicus	RefSeq	GI_62660635-S	ILMN_272706	HTRA3_PREDICTED	XM_001058037.1	XM_001058037.1		360959	109500747	XM_001058037.1	Htra3_predicted	XP_001058037.1	ILMN_1362915	0000540100	S	1930	GTCCAGTGCTGAGTCCAAGGCTGGACCTAACCAGGGATCTGGATCTCAGC				14q21	PREDICTED: Rattus norvegicus HtrA serine peptidase 3 (predicted) (Htra3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662860-S	ILMN_278206	MYST3	XM_001063777.1	XM_001063777.1		306571	109504314	XM_001063777.1	Myst3	XP_001063777.1	ILMN_1361963	0004200427	S	6244	ATGCAGATGCAGATGGGAATGATGGGGAGCCAGGCCTATACCCAGCAGCC				16q12.5	PREDICTED: Rattus norvegicus MYST histone acetyltransferase (monocytic leukemia) 3 (Myst3), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The modification of histones by addition of acetyl groups [goid 16573] [evidence ISS]; The modification of histones by addition of acetyl groups [goid 16573] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence ISS]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence IEA]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence ISS]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence ISS]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665494-A	ILMN_276169	ZFP276	NM_001012058.1	NM_001012058.1		307924	58865689	NM_001012058.1	Zfp276	NP_001012058.1	ILMN_1376528	0001740300	S	1403	CAGTGTGAGGTCTGTGGGTTCCAGTGCAGGCAACGAGCGTCCCTCAAGTA	19	+	53587348-53587349:53587421-53587468	19q12	Rattus norvegicus zinc finger protein (C2H2 type) 276 (Zfp276), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13591915-S	ILMN_273264	ABCC6	NM_031013.1	NM_031013.1		81642	13591915	NM_031013.1	Abcc6	NP_112275.1	ILMN_1361474	0006590048	S	5596	CCCCCCAGGACTGCATCATGAATTGATCCGCCCTAATAGCACCCATGACT	1	-	96448717-96448766	1q22	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 6 (Abcc6), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Mrp6	Mrp6
Rattus norvegicus	RefSeq	GI_62646068-A	ILMN_270176	FOXS1	NM_001012091.1	NM_001012091.1		311547	58865751	NM_001012091.1	Foxs1	NP_001012091.1	ILMN_1376717	0005420446	S	1171	CCCTGGGGGGACCTACTGACAAACTTGGGATGTGGGGAAATGGAACCCTC	3	-	143272556-143272605	3q41	Rattus norvegicus forkhead box S1 (Foxs1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639584-S	ILMN_265938	SIGLEC5_PREDICTED	XM_001080306.1	XM_001080306.1		292843	109461803	XM_001080306.1	Siglec5_predicted	XP_001080306.1	ILMN_1371586	0004150048	S	1626	CTTCCAAGGTCCGAGGCCCCAGCAGCCAAAGAACACGGAGACCATCAAGT				1q22	PREDICTED: Rattus norvegicus sialic acid binding Ig-like lectin 5 (predicted) (Siglec5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652891-S	ILMN_69262	CERK_PREDICTED	XM_217019.4	XM_217019.4		300129	109481143	XM_217019.4	Cerk_predicted	XP_217019.2	ILMN_1364097	0002350373	S	4179	GGAGCCAGGAGCACTGACTGGGAGCACTGACACGAGAATGGCCCAATATG	7	-	124139227-124139276	7q34	PREDICTED: Rattus norvegicus ceramide kinase (predicted) (Cerk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079050-S	ILMN_274036	ZFP52	NM_001014158.1	NM_001014158.1		361487	62079050	NM_001014158.1	Zfp52	NP_001014180.1	ILMN_1369065	0000460035	S	2573	GATGCTCCTATCTTAGAGTTCATCAGAAAACTCACACTGGAGAGAAACCT	1	+	59568298-59568347	1q12	Rattus norvegicus zinc finger protein 52 (Zfp52), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657058-S	ILMN_63142	PTRF_PREDICTED	XM_220982.3	XM_220982.3		287710	109489028	XM_220982.3	Ptrf_predicted	XP_220982.1	ILMN_1350794	0004060403	S	1115	CCCTTTACCTTCCATGTCAAGAAGATCCGCGAGGGCGAGGTGGAGGTGCT	10	-	89893754-89893803	10q32.1	PREDICTED: Rattus norvegicus polymerase I and transcript release factor (predicted) (Ptrf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648731-S	ILMN_60982	FBXL4_PREDICTED	XM_232833.4	XM_232833.4		313101	109474687	XM_232833.4	Fbxl4_predicted	XP_232833.3	ILMN_1356157	0005420711	S	2164	GTCCACACCCACTCACCACTAAAATCATGCTTTGGTGGCTCTTGTGGGCG	5	+	37229881-37229930	5q21	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 4 (predicted) (Fbxl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656369-S	ILMN_272385	CAMTA2_PREDICTED	XM_001079889.1	XM_001079889.1		287462	109491192	XM_001079889.1	Camta2_predicted	XP_001079889.1	ILMN_1363056	0004570450	S	4497	CCGGGCTGGCTCCACGAGCACTTTCTACTTGTGCATGGGCTTGGTTTATA				10q24	PREDICTED: Rattus norvegicus calmodulin binding transcription activator 2 (predicted) (Camta2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638252-S	ILMN_273875	HEBP2_PREDICTED	XM_001072434.1	XM_001072434.1		308632	109460488	XM_001072434.1	Hebp2_predicted	XP_001072434.1	ILMN_1371300	0003710528	S	764	AGATCACTGGCAGGGGCAGACCTTCTGCTGAGTGCAGACATTGATAGCGC				1p12	PREDICTED: Rattus norvegicus heme binding protein 2 (predicted) (Hebp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929185-S	ILMN_291122	FLOT2	NM_031830.1	NM_031830.1		83764	13929185	NM_031830.1	Flot2	NP_114018.1	ILMN_1350025	0000130292	S	2222	TATAGGCCTTCTTCCTGCTAGTGAATGGGGCTCTCCCAGGGGGCAAGGCT	10	+	64103775-64103824	10q25	Rattus norvegicus flotillin 2 (Flot2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane [goid 16600] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93331	MGC93331
Rattus norvegicus	RefSeq	GI_62656327-S	ILMN_60628	TNK1_PREDICTED	XM_220614.4	XM_220614.4		303247	109488388	XM_220614.4	Tnk1_predicted	XP_220614.4	ILMN_1365252	0005670040	S	1780	TGGGTCCAGCAAAGTCACTATCCCCCCTGGAGGTCCCTTATCAGACTCGG	10	-	56692717-56692766	10q24	PREDICTED: Rattus norvegicus tyrosine kinase, non-receptor, 1 (predicted) (Tnk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640412-S	ILMN_290814	RGD1563721_PREDICTED	XM_001058176.1	XM_001058176.1		309252	109462093	XM_001058176.1	RGD1563721_predicted	XP_001058176.1	ILMN_1354350	0000610239	S	3009	TTTTTTACTTGCTCTGGTCAGCCGAAGGGCCGGCGCCTCCTCAGTCAGTG				1q22	PREDICTED: Rattus norvegicus similar to Cezanne 2 protein (predicted) (RGD1563721_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645872-S	ILMN_56748	LOC499890	XM_575236.1	XM_575236.1		499890	62645872	XM_575236.1	LOC499890	XP_575236.1	ILMN_1351965	0002810324	S	2230	GCGGCATTCCTGTGTGAGGGAATGGGTCTCCCAAACCATGACTTTAAGGC					PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 81 (LOC499890), mRNA.					
Rattus norvegicus	RefSeq	GI_57114305-S	ILMN_287791	WFDC15A	NM_001008869.1	NM_001008869.1		408226	57114305	NM_001008869.1	Wfdc15a	NP_001008869.1	ILMN_1355220	0002360390	S	128	GCCCGTTTGTCCTGTTACCTTTATGCAACCGTGATAGTGGGTGCAAGGGC	3	-	155141961-155142010	3q42	Rattus norvegicus WAP four-disulfide core domain 15A (Wfdc15a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40018551-S	ILMN_295497	RCBTB2	NM_199084.1	NM_199084.1		290363	40018551	NM_199084.1	Rcbtb2	NP_954515.1	ILMN_1355709	0001400722	S	1677	CAAGCAAGGGATCTGTGAGGAGAATGCTATTGCTCTGCTGTCTGCTGCTG	15	+	53815629-53815667:53819622-53819632	15p11	Rattus norvegicus regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 (Rcbtb2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC72635; Chc1l	MGC72635; Chc1l
Rattus norvegicus	RefSeq	GI_62718223-S	ILMN_51812	LOC301959	XM_217508.4	XM_217508.4		301959	109513437	XM_217508.4	LOC301959	XP_217508.4	ILMN_1365098	0004560364	S	119	CCATCCCTTAGATTTGCAGAAAGCTGTTTCATCTACGTGGAAGGGACCAG	Un|NW_047883.1	+	50509-50558		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC301959), mRNA.					
Rattus norvegicus	RefSeq	GI_57114343-S	ILMN_297150	UHRF1	NM_001008882.1	NM_001008882.1		316129	57114343	NM_001008882.1	Uhrf1	NP_001008882.1	ILMN_1369064	0000460537	S	2426	CCAGCATGTCGCTATGACCTGGACCACAGCTCCCCAACCCGAGTGAATCA	Un|NW_047865.1	-	753520-753569		Rattus norvegicus ubiquitin-like with PHD and ring finger domains 1 (Uhrf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Np95; Uhrf1; Ac2-121	Np95; Uhrf1; Ac2-121
Rattus norvegicus	RefSeq	GI_19173793-S	ILMN_264837	LKAP	NM_133421.1	NM_133421.1		170946	19173793	NM_133421.1	Lkap	NP_596912.1	ILMN_1352800	0004120446	S	7284	GCGTGACATGCCCAAGAGGCCAGTCCAATCACTATTTCTTTATCCAGAGG	10	+	871881-871930	10q11	Rattus norvegicus limkain b1 (Lkap), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660794-S	ILMN_296750	RGD1564930_PREDICTED	XM_001054328.1	XM_001054328.1		498410	109500989	XM_001054328.1	RGD1564930_predicted	XP_001054328.1	ILMN_1350621	0001980541	S	6973	GAGGAGGAGTGTTGCTCAGGCTTTTGCTTCAAGGCCATCAGTTGGGCAGA				14q21	PREDICTED: Rattus norvegicus similar to novel protein similar to Tensin Tns (predicted) (RGD1564930_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663889-S	ILMN_266522	SEC61A2_PREDICTED	XM_001065523.1	XM_001065523.1		361273	109506075	XM_001065523.1	Sec61a2_predicted	XP_001065523.1	ILMN_1364026	0006650324	S	1312	ACACTGTCCATCTAGTGTTAGCCATGACGCTGGGAAGCCGTGGACCTGCC				17q12.3	PREDICTED: Rattus norvegicus Sec61, alpha subunit 2 (S. cerevisiae) (predicted) (Sec61a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717776-S	ILMN_64529	LOC363313	XM_343653.3	XM_343653.3		363313	109512831	XM_343653.3	LOC363313	XP_343654.3	ILMN_1356322	0002940300	S	1294	GAGGAGAAACAGCAATACGTCTGTGCTTCTAAATGTTCGTTAAGAATATC	Un|NW_047831.1	+	99679-99728		PREDICTED: Rattus norvegicus hypothetical LOC363313 (LOC363313), mRNA.					
Rattus norvegicus	RefSeq	GI_57526904-S	ILMN_278772	PRELID1	NM_001009636.1	NM_001009636.1		290995	57526904	NM_001009636.1	Prelid1	NP_001009636.1	ILMN_1372508	0002450142	S	522	TCGGGAGGCCTGGGTCTCCTCTAGCTTATTTGGTGTCTCCAGAGCTGTCC	17	-	15350963-15351012	17p14	Rattus norvegicus PRELI domain containing 1 (Prelid1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]			Preli; MGC109157	Preli; MGC109157
Rattus norvegicus	RefSeq	GI_58865959-A	ILMN_290204	VRK1	NM_001012194.1	NM_001012194.1		362779	58865959	NM_001012194.1	Vrk1	NP_001012194.1	ILMN_1376349	0002480035	S	1750	ACGTGCTTTGGGACTTGGGAGCGTGTGCTGGCTCTGGCCGCTCTGCACTT	6	+	130249233-130249282	6q32	Rattus norvegicus vaccinia related kinase 1 (Vrk1), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11967972-S	ILMN_279226	ACVRL1	NM_022441.1	NM_022441.1		25237	11967972	NM_022441.1	Acvrl1	NP_071886.1	ILMN_1358119	0001190138	S	3585	TCAGACCAGTGGGGCAAAGTCTGAAGGTTCTCTGGTCACTGGAGCCAGGG	7	+	139884340-139884389	7q36	Rattus norvegicus activin A receptor type II-like 1 (Acvrl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IDA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that decreases the rate, frequency, or extent of the orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 10596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of BMP signaling pathway activity [goid 30513] [evidence ISS]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence IEA]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51895] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51895] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence TAS];  [goid 4702] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I TGF-beta receptor [goid 5025] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IDA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IEA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence TAS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IEA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]	R3; SETHKIR; MGC91691; R-3	R3; SETHKIR; MGC91691; R-3
Rattus norvegicus	RefSeq	GI_40786456-S	ILMN_294345	RGD735065	NM_199379.1	NM_199379.1		294311	40786456	NM_199379.1	RGD735065	NP_955411.1	ILMN_1361109	0002570193	S	1066	CATGCCGATAGAGTCTGGGGACATTGGCTATGCTGGTGCTGCCCACTGGA	20	+	7607449-7607473:7610013-7610037	20p12	Rattus norvegicus similar to GI:13385412-like protein splice form I (RGD735065), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC72991	MGC72991
Rattus norvegicus	RefSeq	GI_62642227-S	ILMN_54519	GPR120_PREDICTED	XM_215281.4	XM_215281.4		294075	109460050	XM_215281.4	Gpr120_predicted	XP_215281.4	ILMN_1362207	0001850167	S	1155	GGTGTGCATGTAAAGGGAGTTAAACACCAGGAAAAGCCCACCAGGGTACC	1	+	242441241-242441290	1q53	PREDICTED: Rattus norvegicus G protein-coupled receptor 120 (predicted) (Gpr120_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664806-S	ILMN_297261	GTL3	NM_001037978.1	NM_001037978.1		307642	83816940	NM_001037978.1	Gtl3	NP_001033067.1	ILMN_1359865	0000630736	S	708	GGCCAAACAATAACTGGACAGCAGCTGAGGGGACAGACTCTGGACGCTGA	19	+	10080603-10080609:10081042-10081084	19p13	Rattus norvegicus gene trap locus 3 (Gtl3), mRNA.				MGC124689	MGC124689
Rattus norvegicus	RefSeq	GI_62667504-S	ILMN_66080	RGD1562644_PREDICTED	XM_219825.4	XM_219825.4		293913	109511343	XM_219825.4	RGD1562644_predicted	XP_219825.4	ILMN_1372592	0002850100	S	989	GAAGTGGCTGGGAATGAGCTCACCAGCTCCTCATGGGACCTCGGATATGG	X	-	153563366-153563415	Xq37	PREDICTED: Rattus norvegicus similar to Heat shock transcription factor, Y-linked (Heat shock transcription factor 2-like protein) (predicted) (RGD1562644_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658122-S	ILMN_287991	RGD1305614_PREDICTED	XM_001057936.1	XM_001057936.1		303824	109494645	XM_001057936.1	RGD1305614_predicted	XP_001057936.1	ILMN_1351294	0004050463	S	2315	CTGCACAACGCAAGATCAGGGAAATTGTACAGCAGGTGAAGCAGCAGGCG				11q23	PREDICTED: Rattus norvegicus similar to IGF-II mRNA-binding protein 2 (predicted) (RGD1305614_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639276-A	ILMN_297724	LGALS7	NM_022582.1	NM_022582.1		29518	12018231	NM_022582.1	Lgals7	NP_072104.1	ILMN_1376402	0003870433	S	191	GGTTGTCTTCAACACCAAACAGCAAGGCAAATGGGGCCGTGAGGAGCGGG	1	+	83969355-83969404	1q21	Rattus norvegicus lectin, galactose binding, soluble 7 (Lgals7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence TAS]	Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656410	ILMN_286909	THG1L	NM_001013966.1	NM_001013966.1		303067	62078660	NM_001013966.1	Thg1l	NP_001013988.1	ILMN_1649860	0004780524	S	808	GGCCGTGACTCGGACCAGAACCAAGCTGGTGGCTTTGAACTGTGATCTCA	10	-	31087837-31087886	10q21	Rattus norvegicus tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) (Thg1l), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically [goid 6400] [evidence ISS]	Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of a tRNA molecule; observed for His tRNAs [goid 8193] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656748	ILMN_275404	MKS1	NM_001034917.1	NM_001034917.1		287612	77917535	NM_001034917.1	Mks1	NP_001030089.1	ILMN_1649920	0005860139	S	1432	CTTTGGATTCCGCACTGAGACGACGGGTACGGTCACCTTCCGGCTGCACT	10	+	76158580-76158629	10q26	Rattus norvegicus Meckel syndrome, type 1 (Mks1), mRNA.				MGC124860	MGC124860
Rattus norvegicus	RefSeq	GI_62641547-S	ILMN_295412	RGD1565431_PREDICTED	XM_001057432.1	XM_001057432.1		499280	109463098	XM_001057432.1	RGD1565431_predicted	XP_001057432.1	ILMN_1374516	0001580739	S	1119	GGTGGCTCCCATTCTGATTCGTCCAACCCGGAGAGCACCTTGATGACCAC				1q41	PREDICTED: Rattus norvegicus similar to MAPK-interacting and spindle-stabilizing protein (predicted) (RGD1565431_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978448-S	ILMN_288935	ADD2	NM_012491.1	NM_012491.1		24171	6978448	NM_012491.1	Add2	NP_036623.1	ILMN_1350628	0000520400	S	3167	GGGCCACCAAATGTATGCACAGTCATGGCTTGGAAGTGTCCGTAGATGGG	4	+	120266366-120266415	4q34	Rattus norvegicus adducin 2 (beta) (Add2), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IMP]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence NAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	beta-ADD	beta-ADD
Rattus norvegicus	RefSeq	GI_62645991-S	ILMN_286329	NKX2-2_PREDICTED	XM_001056116.1	XM_001056116.1		366214	109470963	XM_001056116.1	Nkx2-2_predicted	XP_001056116.1	ILMN_1365730	0005220037	S	1756	GTGATCATCGTTGCCAAATGACGTTCTGGATGGGCCTGTGTCGCCGTCCG				3q41	PREDICTED: Rattus norvegicus NK2 transcription factor related, locus 2 (Drosophila) (predicted) (Nkx2-2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654262-S	ILMN_48388	SEMA3B_PREDICTED	XM_343479.3	XM_343479.3		363142	109483872	XM_343479.3	Sema3b_predicted	XP_343480.1	ILMN_1371487	0005340731	S	2945	CCTAGCGGTCTCAAGGCCTGTACTTTTCCCATCCAAGAAGGCTGTAGTGG	8	-	112845315-112845364	8q32	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B (predicted) (Sema3b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639798-S	ILMN_65748	LOC499153	XM_579919.1	XM_579919.1		499153	62639798	XM_579919.1	LOC499153	XP_579919.1	ILMN_1364545	0004050014	S	353	CTGTGAGAGCGAGTGAAGACGCGAGAATGTGAGTGAGCGGATGGGGCTAG					PREDICTED: Rattus norvegicus LOC499153 (LOC499153), mRNA.					
Rattus norvegicus	RefSeq	GI_46048640-S	ILMN_279779	CYP1A1	NM_012540.2	NM_012540.2		24296	46048640	NM_012540.2	Cyp1a1	NP_036672.2	ILMN_1363608	0001230097	S	2265	GTGTAGTCCAAGTTGCCTCTGAACTTGCTACCAAGGGTGGCCTTGAACTC	8	+	61467886-61467935	8q24	Rattus norvegicus cytochrome P450, family 1, subfamily a, polypeptide 1 (Cyp1a1), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]	The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence ISS]; The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 9404] [evidence ISS]; The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern [goid 18894] [evidence IDA]; The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern [goid 18894] [evidence ISS]; The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings) [goid 46483] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IDA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]	CP11; Cyp45c; P-450MC; Cypc45c; P450-C; P450DX; CYP1; P1-450; AHRR; AHH	CP11; Cyp45c; P-450MC; Cypc45c; P450-C; P450DX; CYP1; P1-450; AHRR; AHH
Rattus norvegicus	RefSeq	GI_62654622-S	ILMN_67075	RGD1561626_PREDICTED	XM_576503.2	XM_576503.2		501088	109485661	XM_576503.2	RGD1561626_predicted	XP_576503.2	ILMN_1354833	0006940193	S	1478	CCACTCATCGGGGACATACACTCACTGATACTGAAGGCCCTGTTCCTTAG	9	+	4505270-4505319	9q11	PREDICTED: Rattus norvegicus similar to TBC1 domain family, member 5 (predicted) (RGD1561626_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58000428-S	ILMN_292576	TAAR7C	NM_001009975.1	NM_001009975.1		494535	58000428	NM_001009975.1	Taar7c	NP_001009975.1	ILMN_1355459	0000580592	S	870	CATTGACTCCATCATTGACGCCTTCCTGGGGTTCATCACGCCCACGTATA	1	-	21955710-21955759	1p12	Rattus norvegicus trace amine-associated receptor 7C (Taar7c), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663182-S	ILMN_273678	SPOCK1	XM_001067546.1	XM_001067546.1		306759	109505432	XM_001067546.1	Spock1	XP_001067546.1	ILMN_1373684	0006940458	S	2075	GACCCTCTCTGATTACCCACATCGGTGGTTCTTACAGCATGGTTCCCAGC				17p14	PREDICTED: Rattus norvegicus sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 (Spock1), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655807-S	ILMN_289283	PRSS22_PREDICTED	XM_001056913.1	XM_001056913.1		302971	109490287	XM_001056913.1	Prss22_predicted	XP_001056913.1	ILMN_1361031	0005670059	S	721	AAGTTTGTACTGGCGGGGAGCTGGTCAGGAAGCCATCACCGAGGACATGC				10q12	PREDICTED: Rattus norvegicus protease, serine, 22 (predicted) (Prss22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644706-S	ILMN_272631	RGD1307832_PREDICTED	XM_001072175.1	XM_001072175.1		311796	109469422	XM_001072175.1	RGD1307832_predicted	XP_001072175.1	ILMN_1362862	0004670348	S	2233	GGCAGAGGTGGATGGTGGTTGGGATATAGGGAAAGCAGTGGGCAAAGGCC				3p13	PREDICTED: Rattus norvegicus similar to cofactor of BRCA1; negative elongation factor protein B (predicted) (RGD1307832_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653493-S	ILMN_285408	RGD1560112_PREDICTED	XM_001061654.1	XM_001061654.1		363044	109484520	XM_001061654.1	RGD1560112_predicted	XP_001061654.1	ILMN_1371661	0006350113	S	168	GAGAGGAGAAGGATGCTGTCAGGCTAAACCTGGTCAGAAATGTGCCTCAC				8q21	PREDICTED: Rattus norvegicus similar to Urinary protein 2 precursor (RUP-2) (predicted) (RGD1560112_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758473-S	ILMN_288268	CDC42BPA	NM_053657.1	NM_053657.1		114116	16758473	NM_053657.1	Cdc42bpa	NP_446109.1	ILMN_1356750	0003450204	S	6234	TATAAAGACACAGAAGTCAGGTCCCGGTGGTGTCTGTCCTCAAGCCTAGG	13	+	95865425-95865474	13q26	Rattus norvegicus CDC42 binding protein kinase alpha (Cdc42bpa), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence IDA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]	Pk428; Mrck	Pk428; Mrck
Rattus norvegicus	RefSeq	GI_27662803	ILMN_273020	RGD1308787_PREDICTED	XM_001074045.1	XM_001074045.1		288512	109496663	XM_001074045.1	RGD1308787_predicted	XP_001074045.1	ILMN_1650129	0001980184	S	2603	ACTCGCAACTGTCCCCGCAGTACCACAACCTGAGCTATTCATCCAGCCCC				12q11	PREDICTED: Rattus norvegicus similar to slit homolog 1 (predicted) (RGD1308787_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647239-S	ILMN_57382	LOC500121	XM_575473.1	XM_575473.1		500121	62647239	XM_575473.1	LOC500121	XP_575473.1	ILMN_1356462	0005340128	S	662	TAATGGCAGGTCAGGACGATATGATGGCTGTCCCCTGTACCACACCCTCG					PREDICTED: Rattus norvegicus similar to PALS2-alpha splice variant (LOC500121), mRNA.					
Rattus norvegicus	RefSeq	GI_62646882-S	ILMN_63025	MDFIC_PREDICTED	XM_342643.3	XM_342643.3		362325	109471786	XM_342643.3	Mdfic_predicted	XP_342644.2	ILMN_1375168	0000510184	S	960	GCTGCTGTGGAGACGAGATGGGTGATGACTGTAGCTGCCCCTGTGACATG	4	+	41319078-41319127	4q21	PREDICTED: Rattus norvegicus MyoD family inhibitor domain containing (predicted) (Mdfic_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642250-S	ILMN_55525	CYP2C55_PREDICTED	XM_217906.4	XM_217906.4		292330	109460104	XM_217906.4	Cyp2c55_predicted	XP_217906.4	ILMN_1372232	0004610092	S	936	GGTGCACGAGATCCAGAGATATATTAACCTCATCCCCAACAATGTGCCCC	1	-	244522305-244522354	1q53	PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 55 (predicted) (Cyp2c55_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577314-S	ILMN_289080	OLR413	NM_001000826.1	NM_001000826.1		405115	47577314	NM_001000826.1	Olr413	NP_001000826.1	ILMN_1356638	0002850494	S	531	CTTTTGCGACCTCGCTGCCTTACTGAAGCTCTCATGCTCAGACATCTCCC	3	+	16374823-16374872	3q11	Rattus norvegicus olfactory receptor 413 (Olr413), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr413	Olr413
Rattus norvegicus	RefSeq	GI_56799420-S	ILMN_300645	ATP2C1	NM_131907.2	NM_131907.2		170699	56799420	NM_131907.2	Atp2c1	NP_571982.2	ILMN_1357443	0000840112	S	4548	CGCTGCTGCGCTGTCGTTGATAGGAGAACTCTGTTGTCTGAGTCTGTACT	8	-	110516334-110516383	8q32	Rattus norvegicus ATPase, Ca++ transporting, type 2C, member 1 (Atp2c1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence ISS]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the Golgi apparatus of a cell or between the Golgi and its surroundings [goid 32468] [evidence ISS]; The directed movement of calcium ions (Ca2+) into, out of or within the Golgi apparatus [goid 32472] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of manganese (Mn) ions into, out of, within or between cells [goid 6828] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence ISS]; The regulation of the levels, transport, and metabolism of manganese ions within a cell or between a cell and its external environment [goid 30026] [evidence ISS]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the Golgi apparatus of a cell or between the Golgi and its surroundings [goid 32468] [evidence ISS]; The directed movement of calcium ions (Ca2+) into, out of or within the Golgi apparatus [goid 32472] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mn2+(out) = ADP + phosphate + Mn2+(in) [goid 15410] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]	MGC93231	MGC93231
Rattus norvegicus	RefSeq	GI_62665484-S	ILMN_51107	LOC502207	XM_577667.1	XM_577667.1		502207	62665484	XM_577667.1	LOC502207	XP_577667.1	ILMN_1363835	0005080670	S	2528	CGGGCTCCTACTGATCACTGCACCGGAGCTCCTACTGGTCACTGTACTAG					PREDICTED: Rattus norvegicus similar to cyst germination specific acidic repeat protein precursor (LOC502207), mRNA.					
Rattus norvegicus	RefSeq	GI_62641167-S	ILMN_264064	RGD1565301_PREDICTED	XM_001078235.1	XM_001078235.1		365357	109462718	XM_001078235.1	RGD1565301_predicted	XP_001078235.1	ILMN_1371486	0006380438	S	401	CCATGGTGGGCTGTGCCTCTTCTGGGGCTTTCGTGTCCGCGGTTAGCACA				1q34	PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (predicted) (RGD1565301_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664673-S	ILMN_54040	RGD1560212_PREDICTED	XM_574178.2	XM_574178.2		498890	109506836	XM_574178.2	RGD1560212_predicted	XP_574178.2	ILMN_1370745	0003120142	S	1587	CCCTTTCCTGGTCAGAGATGGTAATGGGTTCTGGACTGATACAGGAGCAG	18	+	77112007-77112056	18q12.3	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 18, Wayne State University 98, expressed (predicted) (RGD1560212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647026-S	ILMN_69854	LOC500084	XM_575435.1	XM_575435.1		500084	62647026	XM_575435.1	LOC500084	XP_575435.1	ILMN_1372245	0005360670	S	2568	CAGGCTGCTGTTCCTCAACCGGCCCAACTGTGGCATCCTAAGCCAGTTTC				4q22	PREDICTED: Rattus norvegicus similar to Ab2-427 (LOC500084), mRNA.					
Rattus norvegicus	RefSeq	GI_62651348	ILMN_59023	LOC366748	XM_345736.2	XM_345736.2		366748	62651348	XM_345736.2	LOC366748	XP_345737.2	ILMN_1651006	0004070458	S	150	GGACTACAGTGTACACTGGGTTCGCCAGCCTCCAGGAAAAGGTCTGGAGT					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region MC101 precursor (LOC366748), mRNA.					
Rattus norvegicus	RefSeq	GI_62643514-S	ILMN_300949	GMPS	NM_001024754.1	NM_001024754.1		295088	67078507	NM_001024754.1	Gmps	NP_001019925.1	ILMN_1350891	0006900075	S	1852	ACATTCTCCGGGAGTCTGGGTATGCTGGGAAAATCAGCCAGATGCCAGTG	2	+	153837597-153837602:153838681-153838724	2q31	Rattus norvegicus guanine monphosphate synthetase (Gmps), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate [goid 6177] [evidence IDA]; The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate [goid 6177] [evidence IEA]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + xanthosine 5'-phosphate + NH3 = AMP + diphosphate + GMP [goid 3921] [evidence IDA]; Catalysis of the reaction: ATP + xanthosine 5'-phosphate + L-glutamine + H2O = AMP + diphosphate + GMP + L-glutamate [goid 3922] [evidence IDA]; Catalysis of the reaction: ATP + xanthosine 5'-phosphate + L-glutamine + H2O = AMP + diphosphate + GMP + L-glutamate [goid 3922] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62661948-S	ILMN_70147	LOC502009	XM_577437.1	XM_577437.1		502009	62661948	XM_577437.1	LOC502009	XP_577437.1	ILMN_1352442	0005670133	S	624	ACACTGCGGGAGGTTGAGCTGACAGAAGATTCTGGAGGGCCTCTTGTGTG					PREDICTED: Rattus norvegicus similar to granzyme C (LOC502009), mRNA.					
Rattus norvegicus	RefSeq	GI_62653004-S	ILMN_52031	HDAC7A	XM_345868.3	XM_345868.3		84582	109481233	XM_345868.3	Hdac7a	XP_345869.2	ILMN_1374358	0002320600	S	3824	CCCACACAGGACTAGCTTGGCTGAGGGATAGGAAGGTGGGAGAGTAGACA	7	-	136501338-136501387	7q36	PREDICTED: Rattus norvegicus histone deacetylase 7A (Hdac7a), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence TAS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence TAS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence TAS]	Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence TAS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence TAS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence TAS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27682180-S	ILMN_272295	TREX2_PREDICTED	XM_001058052.1	XM_001058052.1		309275	109462353	XM_001058052.1	Trex2_predicted	XP_001058052.1	ILMN_1370915	0000630315	S	434	CCCACTATTATGCACGGAGCTACAACGTCTGGGTGCCCATCTGCCTCGAG				Xq37	PREDICTED: Rattus norvegicus three prime repair exonuclease 2 (predicted) (Trex2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648187-S	ILMN_268610	RGD1559795_PREDICTED	XR_008191.1	XR_008191.1		500322	109474258	XR_008191.1	RGD1559795_predicted		ILMN_1369806	0001190333	S	357	AGCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAGCCTCACCCTGACGGC				4q42	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (predicted) (RGD1559795_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645304	ILMN_294037	TTN	XM_001065955.1	XM_001065955.1		84015	109470141	XM_001065955.1	Ttn	XP_001065955.1	ILMN_1650171	0003140577	S	101031	TCCTGGAGGTCCCGGGTGCAGCAGATGCCTCGTGTGGTAGTTCTAAATTT				3q23	PREDICTED: Rattus norvegicus titin (Ttn), mRNA.	The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines [goid 31430] [evidence ISS]; The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line [goid 31672] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IDA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; Anterior movement of an organism, following the direction of the head of the animal [goid 43056] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence IDA]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle [goid 55002] [evidence ISS]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence ISS]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645308-S	ILMN_294037	TTN	XM_001065955.1	XM_001065955.1		84015	109470141	XM_001065955.1	Ttn	XP_001065955.1	ILMN_1373306	0002510019	S	42481	GTGGAAAAGAGAGACGTGAGGCGGAAAGGCTGGCAAACCGTGGACACCAC				3q23	PREDICTED: Rattus norvegicus titin (Ttn), mRNA.	The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines [goid 31430] [evidence ISS]; The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line [goid 31672] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IDA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; Anterior movement of an organism, following the direction of the head of the animal [goid 43056] [evidence ISS]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence IDA]; The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle [goid 55002] [evidence ISS]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence ISS]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653483-S	ILMN_55200	SVS7_PREDICTED	XM_343369.2	XM_343369.2		363041	62653483	XM_343369.2	Svs7_predicted	XP_343370.1	ILMN_1372595	0002360403	S	406	TGTTTCCACACCGACCTGAGATCACTGAGACAGCAGCAACAAAGGCTGTG				8q21	PREDICTED: Rattus norvegicus seminal vesicle protein, secretion 7 (predicted) (Svs7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27663685-S	ILMN_300278	RGD1565538_PREDICTED	XR_009510.1	XR_009510.1		288575	109519855	XR_009510.1	RGD1565538_predicted		ILMN_1367347	0006840609	S	540	GATCATAGTGGCTGTGGAAGTCTTCTCCATTTTGGCCTCCAGCACAGGTC					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1565538_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577198-S	ILMN_282976	OLR358	NM_001000756.1	NM_001000756.1		405027	47577198	NM_001000756.1	Olr358	NP_001000756.1	ILMN_1365690	0001980372	S	883	GTCAAGAGTGCGTTCACTAAAGTTTTTCAGTGGCAAAGTAGCCTCCAGTG	1	-	216332787-216332836	1q43	Rattus norvegicus olfactory receptor 358 (Olr358), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr358	Olr358
Rattus norvegicus	RefSeq	GI_62664582-S	ILMN_272886	RGD1561455_PREDICTED	XR_008037.1	XR_008037.1		364885	109507429	XR_008037.1	RGD1561455_predicted		ILMN_1367724	0002190528	S	340	GCAGAACCCAAAGGAACGAAGAGAGTGAAGCCAGTGAGGTACACGGCAGC				18q12.1	PREDICTED: Rattus norvegicus similar to Ras GTPase-activating-like protein IQGAP2 (predicted) (RGD1561455_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577504-S	ILMN_299414	OLR490	NM_001000933.1	NM_001000933.1		405253	47577504	NM_001000933.1	Olr490	NP_001000933.1	ILMN_1358539	0003140113	S	714	CTCTACATGTGGGTCTCATCTGACAGTGGTTGTGGTGTTCTATGGTACTC	3	-	69486628-69486677	3q24	Rattus norvegicus olfactory receptor 490 (Olr490), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr490	Olr490
Rattus norvegicus	RefSeq	GI_6981369-S	ILMN_296168	PLCG1	NM_013187.1	NM_013187.1		25738	6981369	NM_013187.1	Plcg1	NP_037319.1	ILMN_1368112	0004610546	S	4978	AAGGTGCCTCAGCATAGCCAGCATTCAGCACACGCAAACCCACTGCCCAC	3	+	151553869-151553918	3q42	Rattus norvegicus phospholipase C, gamma 1 (Plcg1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus [goid 9629] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of epithelial cell migration [goid 10634] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IPI]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via a store-operated calcium channel [goid 32236] [evidence IMP]; The chemical reactions and pathways resulting in the formation of inositol trisphosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached [goid 32959] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEP]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with the insulin receptor [goid 5158] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with a glutamate receptor [goid 35254] [evidence ISS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]	PPLCA	PPLCA
Rattus norvegicus	RefSeq	GI_62653729-S	ILMN_266323	COMMD4_PREDICTED	XM_001074149.1	XM_001074149.1		363068	109484778	XM_001074149.1	Commd4_predicted	XP_001074149.1	ILMN_1352574	0004540369	S	598	CCCAGACCCTGATGACTGCTTTGGGCTGAGAAGGGTGTTCCTAGCCTCTG				8q24	PREDICTED: Rattus norvegicus COMM domain containing 4 (predicted) (Commd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929143-S	ILMN_277660	TPBG	NM_031807.1	NM_031807.1		83684	13929143	NM_031807.1	Tpbg	NP_113995.1	ILMN_1368083	0000870129	S	2091	CCTAGAACTTGGTAGTGCACAGGAGCACCTGCATCCGAGAGCATGCGTAC	8	+	91079087-91079136	8q31	Rattus norvegicus trophoblast glycoprotein (Tpbg), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	5T4; MGC93332	5T4; MGC93332
Rattus norvegicus	RefSeq	GI_62650189-S	ILMN_68458	LOC500600	XM_580089.1	XM_580089.1		500600	62650189	XM_580089.1	LOC500600	XP_580089.1	ILMN_1349631	0001940746	S	513	GACACTGGAGTGCATGGAGTGAACATGGGTCCAGATGGTGGTACACCTTG					PREDICTED: Rattus norvegicus LOC500600 (LOC500600), mRNA.					
Rattus norvegicus	RefSeq	GI_62666200-S	ILMN_62898	LOC502450	XM_577931.1	XM_577931.1		502450	62666200	XM_577931.1	LOC502450	XP_577931.1	ILMN_1353654	0006110048	S	764	AGTGCAAGCCTTTGAGAGGAAACCGCAGGAACTGGCCAGGCAAATACAGC					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502450), mRNA.					
Rattus norvegicus	RefSeq	GI_56961632-S	ILMN_273925	GABARAPL2	NM_022706.2	NM_022706.2		64670	56961632	NM_022706.2	Gabarapl2	NP_073197.1	ILMN_1363904	0001050110	S	1219	TGCCTGCATGTGTGTCTGTGGGCGTGACTGATCTGCATTTGTGAGCTGCC	19	+	41890700-41890749	19q12	Rattus norvegicus GABA(A) receptor-associated protein like 2 (Gabarapl2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding an autophagic vacuole, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered [goid 421] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108686; Gef2	MGC108686; Gef2
Rattus norvegicus	RefSeq	GI_47577604-S	ILMN_266935	OLR659	NM_001000345.1	NM_001000345.1		295865	47577604	NM_001000345.1	Olr659	NP_001000345.1	ILMN_1370564	0004120086	S	146	ACAGCCAACTGTTGGGATCCCCAATGTACTACTTCCTGGCCTATCTCTCT	3	+	72898303-72898352	3q24	Rattus norvegicus olfactory receptor 659 (Olr659), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr659	Olr659
Rattus norvegicus	RefSeq	GI_62638399-S	ILMN_268411	HINT3	XM_341742.2	XM_341742.2		246769	62638399	XM_341742.2	Hint3	XP_341743.1	ILMN_1350504	0006940131	S	626	CAGCCTGAAGGTTGCTGGCTCACATGTAACACTACCACTGGGGAGCCTTA	1	+	27728925-27728974	1p11	PREDICTED: Rattus norvegicus histidine triad nucleotide binding protein 3 (Hint3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643344	ILMN_66210	LOC499597	XM_574922.1	XM_574922.1		499597	62643344	XM_574922.1	LOC499597	XP_574922.1	ILMN_1650868	0000460575	S	671	GCAGGCGCCACACTGGAGACGTCTTTGGCAGGTCCCCTATGATTTACACA					PREDICTED: Rattus norvegicus similar to Zinc finger protein 431 (LOC499597), mRNA.					
Rattus norvegicus	RefSeq	GI_9506484-S	ILMN_273554	CHRNB2	NM_019297.1	NM_019297.1		54239	9506484	NM_019297.1	Chrnb2	NP_062170.1	ILMN_1355141	0005390100	S	1878	AGGAGTGCCAATGGTGGGGGCCACGGCTGGTAAGTAGAGGCCAGAGATCA	2	-	181961643-181961692	2q34	Rattus norvegicus cholinergic receptor, nicotinic, beta 2 (neuronal) (Chrnb2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IDA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus [goid 1661] [evidence IEA]; A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus [goid 1661] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence IEA]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IMP]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The process whose specific outcome is the progression of the vestibulocochlear nerve over time, from its formation to the mature structure. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea [goid 21562] [evidence IEA]; The process whose specific outcome is the progression of the vestibulocochlear nerve over time, from its formation to the mature structure. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea [goid 21562] [evidence ISS]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IEA]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence ISS]; The progression of the lateral geniculate nucleus over time from its initial formation until its mature state. The lateral geniculate nucleus is the primary processor of visual information received from the retina [goid 21771] [evidence IEA]; The progression of the lateral geniculate nucleus over time from its initial formation until its mature state. The lateral geniculate nucleus is the primary processor of visual information received from the retina [goid 21771] [evidence ISS]; Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region [goid 21952] [evidence IEA]; Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region [goid 21952] [evidence ISS]; Generation of a long process from a neuron whose cell body resides in the central nervous system. The process carries efferent (outgoing) action potentials from the cell body towards target cells [goid 21955] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32225] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32226] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32226] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of dopamine [goid 33603] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of dopamine [goid 33603] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IEA]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 42053] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence ISS]; Any process that modulates the frequency, rate or extent of rapid eye movement (REM) sleep [goid 42320] [evidence IEA]; Any process that modulates the frequency, rate or extent of rapid eye movement (REM) sleep [goid 42320] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep [goid 45188] [evidence IEA]; Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep [goid 45188] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 45759] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 45759] [evidence ISS]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence IEA]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence ISS]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IEA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence IEA]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence ISS]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence IEA]; The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body [goid 60084] [evidence ISS]	 [goid 4889] [evidence IEA];  [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577596-S	ILMN_266773	OLR531	NM_001001051.1	NM_001001051.1		405939	47577596	NM_001001051.1	Olr531	NP_001001051.1	ILMN_1348802	0002690020	S	686	CCACCATTCTGAAGTTGCCAACAGCCACCGGACGGGCAAAAGCATTCTCA	3	-	70349636-70349685	3q24	Rattus norvegicus olfactory receptor 531 (Olr531), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr531	Olr531
Rattus norvegicus	RefSeq	GI_25453377-S	ILMN_280558	NUPL1	NM_139091.1	NM_139091.1		245922	25453377	NM_139091.1	Nupl1	NP_620791.1	ILMN_1367491	0002570301	S	3441	GCAGCCCTCGGTCCAGATTATGGGGGAGGATAGGAAAGGGTGTGCTTTGG	15	-	39316711-39316760	15p12	Rattus norvegicus nucleoporin like 1 (Nupl1), mRNA.	Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence NAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [pmid 8707840] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [pmid 8707840] [evidence IDA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of substances between the nucleus and the cytoplasm of a cell [goid 5487] [pmid 8707840] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 8589458] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 8707840] [evidence IPI]	p58/p45	p58/p45
Rattus norvegicus	RefSeq	GI_62649075	ILMN_55930	LOC366374	XM_345534.2	XM_345534.2		366374	62649075	XM_345534.2	LOC366374	XP_345535.2	ILMN_1649951	0000630372	S	597	GGTCCTCGAGAATCAGGCTCCAGATCCAGACCATCAGCCAATCGTGTTGC				5q24	PREDICTED: Rattus norvegicus similar to GABA(A) receptor-associated protein like 2 (LOC366374), mRNA.					
Rattus norvegicus	RefSeq	GI_62651988-S	ILMN_69598	NUP37_PREDICTED	XM_216872.4	XM_216872.4		299706	109480421	XM_216872.4	Nup37_predicted	XP_216872.2	ILMN_1350945	0003710181	S	880	ACAAGACCTGTCCACATGGATCGCGCACACTCGTTTAGGTGGTCTGCCAT	7	+	24872404-24872441:24874010-24874021	7q13	PREDICTED: Rattus norvegicus nucleoporin 37 (predicted) (Nup37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660491-S	ILMN_51844	LOC289633	XM_223426.3	XM_223426.3		289633	62660491	XM_223426.3	LOC289633	XP_223426.3	ILMN_1350321	0003610039	S	5397	GTTCTGCTAGAGCCTGTAAACCTGACGGGGATGCCAGGGAGTAATAAGAG				14p11	PREDICTED: Rattus norvegicus similar to 3110047P20Rik protein (LOC289633), mRNA.					
Rattus norvegicus	RefSeq	GI_47576594-S	ILMN_263812	OLR865	NM_001000410.1	NM_001000410.1		298474	47576594	NM_001000410.1	Olr865	NP_001000410.1	ILMN_1359025	0004920594	S	394	CCTCTGCGCTATTCTGTCATCCTCAACTGGGGCCTGTGCATACGGTTGGC	5	-	139347628-139347677	5q36	Rattus norvegicus olfactory receptor 865 (Olr865), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr865	Olr865
Rattus norvegicus	RefSeq	GI_62640765	ILMN_53191	RGD1560277_PREDICTED	XM_218822.3	XM_218822.3		308763	109458964	XM_218822.3	RGD1560277_predicted	XP_218822.2	ILMN_1651125	0003290739	S	1007	CCGGCCACCTCCCTGTCAAAACATCTCAGGACTTCAGCAGCTTGACCGAG	1	+	136052948-136052997	1q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D330012F22 gene (predicted) (RGD1560277_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27715718-S	ILMN_276505	RGD1562259_PREDICTED	XM_001070030.1	XM_001070030.1		500451	109476404	XM_001070030.1	RGD1562259_predicted	XP_001070030.1	ILMN_1351629	0006180739	S	319	CAGCTTGTGGTGAAGGTTCCAGGACATGGGATCGTTTCCAGATGAGAATC				5q22	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1562259_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648895-S	ILMN_276505	RGD1562259_PREDICTED	XM_001070030.1	XM_001070030.1		500451	109476404	XM_001070030.1	RGD1562259_predicted	XP_001070030.1	ILMN_1351972	0005290368	S	177	CAAATCACGCTCACCAGCCGCAACGTGAAGTCGCTGGAAAAGGTTTGTGC				5q22	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1562259_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577220-S	ILMN_263142	OLR60	NM_001000748.1	NM_001000748.1		405017	47577220	NM_001000748.1	Olr60	NP_001000748.1	ILMN_1366875	0001090324	S	609	CCTCTATGGACTCTATGTGGTTCTGTCCACAGTGGGTGTAGACTCCTCGC	1	+	160626961-160627010	1q32	Rattus norvegicus olfactory receptor 60 (Olr60), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr60	Olr60
Rattus norvegicus	RefSeq	GI_18426817-S	ILMN_301295	OCIL	NM_130402.1	NM_130402.1		113937	18426817	NM_130402.1	Ocil	NP_569086.1	ILMN_1363449	0001940167	S	1457	TGCCTGGCCTGCTAGGTTCAGCATAGTGACAGCCTGTCTGCATGACCCAT	4	+	166008881-166008930	4q42	Rattus norvegicus osteoclast inhibitory lectin (Ocil), mRNA.					
Rattus norvegicus	RefSeq	GI_62648746-S	ILMN_263139	RGD1309308_PREDICTED	XM_001061009.1	XM_001061009.1		313115	109476241	XM_001061009.1	RGD1309308_predicted	XP_001061009.1	ILMN_1357884	0002470735	S	2169	GAGTGGACAGGGAGAGGATCCGTCAAGCGATGACTTAGACAAGGAACAAC				5q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810074P20 (predicted) (RGD1309308_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14389302-S	ILMN_278839	LOC24906	NM_031537.1	NM_031537.1		24906	14389302	NM_031537.1	LOC24906	NP_113725.1	ILMN_1368490	0006840390	S	1214	GGGTCACCTGGGAAGAGGGAACCTCAACAGAGAAAAATGCCTCCATCAGA	10	+	44080397-44080446	10q22	Rattus norvegicus RoBo-1 (LOC24906), mRNA.				Itg; Slc11a1; Lsh; Bcg; Nramp1; DMT-1	Itg; Slc11a1; Lsh; Bcg; Nramp1; DMT-1
Rattus norvegicus	RefSeq	GI_25742845-S	ILMN_280858	PPP1R12A	NM_053890.1	NM_053890.1		116670	25742845	NM_053890.1	Ppp1r12a	NP_446342.1	ILMN_1360049	0005890497	S	3026	GAAAACACACAAGCGAAGCAGCGGGACTTGCACACACTCCCCAGTGGACC	7	+	46985861-46985910	7q21	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 12A (Ppp1r12a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16885985] [evidence IPI]	Mypt1; MBSP; M110	Mypt1; MBSP; M110
Rattus norvegicus	RefSeq	GI_62664321-S	ILMN_61377	RGD1559856_PREDICTED	XM_225971.4	XM_225971.4		291618	109506523	XM_225971.4	RGD1559856_predicted	XP_225971.4	ILMN_1359353	0002640647	S	1285	GGGAGGGCAGTGGGTAGTCACCACTTTGAAATAAACCTCCTGAAAGGAAG	18	+	33585542-33585591	18p11	PREDICTED: Rattus norvegicus similar to potassium channel tetramerisation domain containing 16 (predicted) (RGD1559856_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981095-S	ILMN_288622	IL1RAP	NM_012968.1	NM_012968.1		25466	6981095	NM_012968.1	Il1rap	NP_037100.1	ILMN_1355895	0004560632	S	1734	GGCCATGCCAGTGAAGAAGAGTCCCAGGTGGTCTAGCAGTGACAAGCAGG	11	-	76100087-76100136	11q22	Rattus norvegicus interleukin 1 receptor accessory protein (Il1rap), mRNA.		Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The chemical reactions and pathways resulting in the formation of interleukin-2 [goid 42094] [evidence IEA]; The chemical reactions and pathways resulting in the formation of interleukin-2 [goid 42094] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response [goid 4908] [evidence IEA]; Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response [goid 4908] [evidence ISS]; Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with interleukin-1 [goid 19966] [evidence TAS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence TAS]	MGC114349; IL-1RAcp	MGC114349; IL-1RAcp
Rattus norvegicus	RefSeq	GI_62643314-S	ILMN_273693	LOC367779	XR_008575.1	XR_008575.1		367779	109511679	XR_008575.1	LOC367779		ILMN_1352006	0001780048	S	3074	GGTTTCAGGAGATGTGTTACAAGGCGTACCTAGCAATTCGGCAGCATGCC					PREDICTED: Rattus norvegicus similar to Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (PI3-kinase p110 subunit alpha) (PtdIns-3-kinase p110) (PI3K) (LOC367779), mRNA.					
Rattus norvegicus	RefSeq	Rn.8287	ILMN_263175	NIPSNAP3A	NM_001009422.1	NM_001009422.1		313211	57164106	NM_001009422.1	Nipsnap3a	NP_001009422.1	ILMN_1530387	0005080368	S	1007	TACTTCATTGTTCTTCTGTGGTTTTATGATTAAGTCTTGTCCTCAAAATA	5	+	70481645-70481694	5q24	Rattus norvegicus nipsnap homolog 3A (C. elegans) (Nipsnap3a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]			MGC105691	MGC105691
Rattus norvegicus	RefSeq	GI_57164106-S	ILMN_263175	NIPSNAP3A	NM_001009422.1	NM_001009422.1		313211	57164106	NM_001009422.1	Nipsnap3a	NP_001009422.1	ILMN_1368304	0005670253	S	867	AGGAGGTGCTGAGCTACCGCACTGCCCTCTGCATGTCTGAGACTTCATGT	5	+	70481505-70481554	5q24	Rattus norvegicus nipsnap homolog 3A (C. elegans) (Nipsnap3a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]			MGC105691	MGC105691
Rattus norvegicus	RefSeq	GI_62647191	ILMN_54897	LOC500108	XM_575459.1	XM_575459.1		500108	62647191	XM_575459.1	LOC500108	XP_575459.1	ILMN_1650497	0001340519	S	2638	CTCTCCAGGTTTAGGAGCTAAAGATCCCAGAGATCCCAGGCACACAGTGC				4q24	PREDICTED: Rattus norvegicus similar to zinc finger protein 398 (LOC500108), mRNA.					
Rattus norvegicus	RefSeq	GI_62642547-S	ILMN_69673	RAB11FIP2_PREDICTED	XM_217660.4	XM_217660.4		308003	109460290	XM_217660.4	Rab11fip2_predicted	XP_217660.4	ILMN_1361622	0006770193	S	1778	TCGGAGGAAGGACACCCACATCCGGGAGCTAGAGGACTACATCGACAACC	1	-	266461861-266461910	1q55	PREDICTED: Rattus norvegicus RAB11 family interacting protein 2 (class I) (predicted) (Rab11fip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605803-S	ILMN_266130	SNX24	NM_001008364.1	NM_001008364.1		361328	56605803	NM_001008364.1	Snx24	NP_001008365.1	ILMN_1365628	0004570592	S	1755	GCTCTGTTCCGGTTCCTCCTCGACTGACCCCGTGTATGGATTAAAGTGAG	18	+	48869774-48869823	18q11	Rattus norvegicus sorting nexin 24 (Snx24), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	MGC94664	MGC94664
Rattus norvegicus	RefSeq	GI_62657637	ILMN_263664	TMEM50B	NM_001025014.1	NM_001025014.1		360698	68163464	NM_001025014.1	Tmem50b	NP_001020185.1	ILMN_1650388	0004210369	S	2044	GCAGAGGTTTATGACGGGTAGCCCTGAGGACCGACTGGAAATGCTGGTGG	11	-	31533995-31534044	11q11	Rattus norvegicus transmembrane protein 50B (Tmem50b), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1307561; MGC109374	RGD1307561; MGC109374
Rattus norvegicus	RefSeq	GI_13786163-S	ILMN_302309	CDH1	NM_031334.1	NM_031334.1		83502	13786163	NM_031334.1	Cdh1	NP_112624.1	ILMN_1371484	0004050524	S	4088	CAGAAAGCAGGAAGAAAACACCACTCTGATGGGAAAAGGGAGGCAAGGCC	19	+	36511783-36511832	19q12	Rattus norvegicus cadherin 1 (Cdh1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The biosynthesis of a synapse [goid 7416] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence IEP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42993] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_33636731-S	ILMN_277165	ZFP191	NM_182955.1	NM_182955.1		360204	33636731	NM_182955.1	Zfp191	NP_892000.1	ILMN_1362688	0001050609	S	964	GAATCCACAGCGGGGAGAAGCCTTACGGATGTGTCGAATGTGGGAAAGCC	18	-	15783287-15783336	18p12	Rattus norvegicus zinc finger protein 191 (Zfp191), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21489990-S	ILMN_264814	ZDHHC2	XM_001064977.1	XM_001064977.1		246326	109504238	XM_001064977.1	Zdhhc2	XP_001064977.1	ILMN_1361928	0004590369	S	831	TCAGTTTCCTGCAAAGCCGTTGAGAGAGTCACAGAGCCACCTCCTTACGG				16q12.1	PREDICTED: Rattus norvegicus zinc finger, DHHC domain containing 2 (Zdhhc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence ISS]; The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence ISS]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661356-S	ILMN_301258	LOC689945	XR_005453.1	XR_005453.1		689945	109501566	XR_005453.1	LOC689945		ILMN_1352461	0002370465	S	1553	GAGCTTCTACACAGTGGGACAGGACTGAGCTTTCCTCAGAGACTGCAATC	15	+	25809570-25809619	15p14	PREDICTED: Rattus norvegicus hypothetical protein LOC689945 (LOC689945), mRNA.					
Rattus norvegicus	RefSeq	GI_62638825-S	ILMN_284054	RGD1559897_PREDICTED	XM_001066538.1	XM_001066538.1		292537	109461052	XM_001066538.1	RGD1559897_predicted	XP_001066538.1	ILMN_1375084	0004210037	S	496	CCCTGGGCTGACTTCCTTCTGAACAGCGCGAATGCACCTGGCACCTACTA				1q12	PREDICTED: Rattus norvegicus similar to osteoclast-associated receptor mOSCAR-M1 (predicted) (RGD1559897_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575912	ILMN_285701	OLR1467	NM_001000025.1	NM_001000025.1		287481	47575912	NM_001000025.1	Olr1467	NP_001000025.1	ILMN_1650709	0005420563	S	881	GCCTGAGGAACAGAGACATAAAGGGGGCCCTAATTAGAGTTCTTTGCAAG	10	+	60245988-60246037	10q24	Rattus norvegicus olfactory receptor 1467 (Olr1467), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1467; ratchr10-60258731-60259684_ORF	Olr1467; ratchr10-60258731-60259684_ORF
Rattus norvegicus	RefSeq	GI_62652122-S	ILMN_53063	RGD1564883_PREDICTED	XM_231785.4	XM_231785.4		312363	109480575	XM_231785.4	RGD1564883_predicted	XP_231785.2	ILMN_1364180	0002850097	S	298	CTGACCATCCAGAACAGACAGGCCCAGATTGAGGTGGTGTCCTCTGCGTC	7	-	56057266-56057315	7q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (predicted) (RGD1564883_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658682-S	ILMN_263349	RGD1310964_PREDICTED	XM_001067630.1	XM_001067630.1		304376	109497036	XM_001067630.1	RGD1310964_predicted	XP_001067630.1	ILMN_1363711	0003710600	S	2405	GCCAGACTTTCCCAGCCTGCCACCGGAATGGAGATTTCACAGGAGGGTAC				12q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430031J16 (predicted), transcript variant 2 (RGD1310964_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645860-S	ILMN_56200	LOC499888	XM_575234.1	XM_575234.1		499888	62645860	XM_575234.1	LOC499888	XP_575234.1	ILMN_1353493	0004810750	S	487	CATTGCCAACCAGGAGAGTATTCTTAGCCTACTGGCATTGCCCGAGTGCC					PREDICTED: Rattus norvegicus similar to small nuclear ribonucleoprotein B (LOC499888), mRNA.					
Rattus norvegicus	RefSeq	GI_62654645-S	ILMN_68136	DAAM2_PREDICTED	XM_236909.4	XM_236909.4		316201	109485689	XM_236909.4	Daam2_predicted	XP_236909.4	ILMN_1367427	0003120164	S	3269	AAAGTCTTGGTTGGAGGCGCCCTGGAGGAGAGCGGCGAGTTCGATGACCT	9	+	6756312-6756361	9q11	PREDICTED: Rattus norvegicus dishevelled associated activator of morphogenesis 2 (predicted) (Daam2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644180	ILMN_63281	RGD1307047	XM_227583.4	XM_227583.4		310781	109465372	XM_227583.4	RGD1307047	XP_227583.4	ILMN_1650283	0007050176	S	2250	TCATTAACGAGAAAGTGCCTGCCCACTGCAACGGAGCCGTCAGCACCTCC	2	-	203767735-203767778:203767779-203767784	2q34	PREDICTED: Rattus norvegicus hypothetical LOC310781 (RGD1307047), mRNA.					
Rattus norvegicus	RefSeq	GI_62647909-S	ILMN_66222	LOC500284	XM_575634.1	XM_575634.1		500284	62647909	XM_575634.1	LOC500284	XP_575634.1	ILMN_1353180	0000840114	S	1349	TGGGAAGGCTCCGACGTGGTGGAAGGCTCTATGGTGGTGGAAGGCTCCAT					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500284), mRNA.					
Rattus norvegicus	RefSeq	GI_62653891-S	ILMN_52543	RGD1308795_PREDICTED	XM_236392.4	XM_236392.4		315804	109483614	XM_236392.4	RGD1308795_predicted	XP_236392.3	ILMN_1364586	0001940193	S	7657	CGTGCTTACTACACCAGAGGTGACAAAAGCAAGCCCTGTCGTGTGTTTCC	8	+	77206828-77206877	8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12994 (predicted) (RGD1308795_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978862-S	ILMN_280964	FYN	XM_001062721.1	XM_001062721.1		25150	109510213	XM_001062721.1	Fyn	XP_001062721.1	ILMN_1362937	0002510546	S	1424	ACGAGCTCATGATCCACTGCTGGAAAAAGGATCCGGAGGAGCGCCCCACT				20q12	PREDICTED: Rattus norvegicus fyn proto-oncogene (Fyn), mRNA.	The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEP]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IMP]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence TAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643476-S	ILMN_49501	LOC499620	XM_579988.1	XM_579988.1		499620	62643476	XM_579988.1	LOC499620	XP_579988.1	ILMN_1370641	0001940279	S	343	CGTTGCCGGGTCCTCCTGACAAAATTCGGCTCGTGGAACGTCTCTCACGT					PREDICTED: Rattus norvegicus LOC499620 (LOC499620), mRNA.					
Rattus norvegicus	RefSeq	GI_62652837-S	ILMN_278316	RGD1306698_PREDICTED	XM_001077904.1	XM_001077904.1		315173	109482647	XM_001077904.1	RGD1306698_predicted	XP_001077904.1	ILMN_1352602	0006040025	S	909	CACACATCCACAACACATCCGAAAGCTGCTAGGGCAGCAGGTGGTGTCAC				7q34	PREDICTED: Rattus norvegicus similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) (RGD1306698_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652965-S	ILMN_50024	LOC300114	XM_235542.3	XM_235542.3		300114	62652965	XM_235542.3	LOC300114	XP_235542.3	ILMN_1362337	0004480706	S	2591	GCAGGTGAATGACTGGTGCCAAGCAGGCAAGTACACAGCCCTCCCCCTAA				7q34	PREDICTED: Rattus norvegicus similar to leucine zipper, down-regulated in cancer 1; breast cancer, up-regulated 1 (predicted) (LOC300114), mRNA.					
Rattus norvegicus	RefSeq	GI_62652545-S	ILMN_51547	ZFP406_PREDICTED	XM_343255.3	XM_343255.3		362925	109480843	XM_343255.3	Zfp406_predicted	XP_343256.3	ILMN_1350315	0004920133	S	3509	GAACTGGGTTCAGAGACTCACGATGCTGCTGCCGTGGCCTCCGTGGTTGC	7	-	105587397-105587446	7q34	PREDICTED: Rattus norvegicus zinc finger protein 406 (predicted) (Zfp406_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656434-S	ILMN_66244	RGD1565729_PREDICTED	XM_220559.4	XM_220559.4		287358	109488204	XM_220559.4	RGD1565729_predicted	XP_220559.4	ILMN_1365827	0004610435	S	1014	GCTGCTCTATGGATTGACATCCTACCTCCTGCCAGAGATGCTGTGTGCTG	10	-	45679775-45679824	10q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565729_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660073-S	ILMN_274161	RGD1560816_PREDICTED	XM_001054849.1	XM_001054849.1		501881	109500189	XM_001054849.1	RGD1560816_predicted	XP_001054849.1	ILMN_1353205	0004850520	S	2241	CCTAGGATACCTGAGGTCCTTGGCTCTGGGAAGCTTTGCTGTGGCATTCC				14p22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1560816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657713-S	ILMN_64028	LOC501762	XM_577162.1	XM_577162.1		501762	62657713	XM_577162.1	LOC501762	XP_577162.1	ILMN_1362543	0005290048	S	1044	GGCTATGCATCATGGAATGAAGGGCATGCATCATGGAATGAAGGGTATGC					PREDICTED: Rattus norvegicus similar to asparagine-rich antigen (LOC501762), mRNA.					
Rattus norvegicus	RefSeq	GI_31542824-S	ILMN_62100	FTL1	NM_022500.2	NM_022500.2		29292	31542824	NM_022500.2	Ftl1	NP_071945.2	ILMN_1366981	0002190408	S	717	TCTGCACCGACCGCCTCAGCACCTCCACCGAATGAACCTCTAAAGCCACT				1q22	Rattus norvegicus ferritin light chain 1 (Ftl1), mRNA.					
Rattus norvegicus	RefSeq	GI_6978796-S	ILMN_284600	EGF	NM_012842.1	NM_012842.1		25313	6978796	NM_012842.1	Egf	NP_036974.1	ILMN_1371224	0006220315	S	4437	GGCTGGAACATTATAGATGCTGCAAGATACACTGCAAGTGTGGCCCCTGC	2	-	227104092-227104141	2q42-q43	Rattus norvegicus epidermal growth factor (Egf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IEA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The process that activates or increases the rate or extent of granule cell precursor proliferation [goid 21940] [evidence IEA]; The process that activates or increases the rate or extent of granule cell precursor proliferation [goid 21940] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor activity [goid 45741] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor activity [goid 45741] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50708] [evidence IMP]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence ISS]	Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence TAS]; Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6978490-S	ILMN_287389	AKR1B1	NM_012498.1	NM_012498.1		24192	6978490	NM_012498.1	Akr1b1	NP_036630.1	ILMN_1363873	0006980280	S	1164	TCGGCCTTTCTTGGTCTTCTTCCCACCTGGAGGACTTTAACACGAGTACC	4	-	61645563-61645612	4q22	Rattus norvegicus aldo-keto reductase family 1, member B1 (aldose reductase) (Akr1b1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group [goid 6061] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals [goid 31098] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IDA]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence ISS]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence ISS]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Akr1b1; ALDRED; Aldr1; RATALDRED; Alr; ALR-P-I; Akr1b3	Akr1b1; ALDRED; Aldr1; RATALDRED; Alr; ALR-P-I; Akr1b3
Rattus norvegicus	RefSeq	GI_62644336-S	ILMN_279897	TRIM33_PREDICTED	XM_001064349.1	XM_001064349.1		365894	109467303	XM_001064349.1	Trim33_predicted	XP_001064349.1	ILMN_1373934	0006420239	S	3880	CTCAGACAGGACCTTCGCTCCTTTGCCAGAGTTTGAGCAGGAAGAGGATG				2q34	PREDICTED: Rattus norvegicus tripartite motif protein 33 (predicted), transcript variant 2 (Trim33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661567-S	ILMN_49627	LOC361048	XM_341328.2	XM_341328.2		361048	62661567	XM_341328.2	LOC361048	XP_341329.1	ILMN_1361285	0003610528	S	1966	CCTCTCCCAGATACATAGGTGTGGGGGCTCAACCAGCATAGGACATAGCT					PREDICTED: Rattus norvegicus similar to Smhs2 homolog (predicted) (LOC361048), mRNA.					
Rattus norvegicus	RefSeq	GI_62649027-S	ILMN_289736	RGD1306148_PREDICTED	XM_001061185.1	XM_001061185.1		313196	109476549	XM_001061185.1	RGD1306148_predicted	XP_001061185.1	ILMN_1369724	0000070301	S	5781	AGCTACTATGGAGACAGACAACAGGCCAGAGCTGCAGGAGAAAGCCTCAG				5q24	PREDICTED: Rattus norvegicus similar to KIAA0368 (predicted) (RGD1306148_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575982	ILMN_262984	OLR62	NM_001000129.1	NM_001000129.1		293201	47575982	NM_001000129.1	Olr62	NP_001000129.1	ILMN_1650961	0000450056	S	450	CGGGGTGGCCATTACAACCCGAGCTACTCTGTCCCTCTTACCATTGCCTT	1	+	160644319-160644368	1q32	Rattus norvegicus olfactory receptor 62 (Olr62), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-160722887-160723849_ORF; Olr62	ratchr1-160722887-160723849_ORF; Olr62
Rattus norvegicus	RefSeq	GI_8393599-S	ILMN_277655	IL8RB	NM_017183.1	NM_017183.1		29385	8393599	NM_017183.1	Il8rb	NP_058879.1	ILMN_1352340	0000430427	S	1235	CCTCTGGGTTCCCTTCTTGTCCTTCAAGCATGGCTCATTACCAGAGACTG	9	+	73477231-73477280	9q33	Rattus norvegicus interleukin 8 receptor, beta (Il8rb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence IEA]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; A defense response that is mediated by cells [goid 6968] [evidence IEA]; A defense response that is mediated by cells [goid 6968] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The change in morphology and behavior of a neutrophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42119] [evidence IEA]; The change in morphology and behavior of a neutrophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42119] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with interleukin-8 to initiate a change in cell activity [goid 4918] [evidence IEA]; Combining with interleukin-8 to initiate a change in cell activity [goid 4918] [evidence ISS]; Combining with chemokines, small chemoattractant molecules normally used to stimulate leukocytes, to initiate a change in cell activity [goid 4950] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Cmkar2	Cmkar2
Rattus norvegicus	RefSeq	GI_62644680-S	ILMN_66494	LOC499742	XM_575077.1	XM_575077.1		499742	62644680	XM_575077.1	LOC499742	XP_575077.1	ILMN_1370729	0003190368	S	379	GGTACTGCAAGGTGAGGACCCTATTGTCTATCTCTGAGTCCCCTGAGAGG					PREDICTED: Rattus norvegicus similar to LRRG00137 (LOC499742), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664328-S	ILMN_61911	POU4F3_PREDICTED	XM_344675.3	XM_344675.3		364855	109506532	XM_344675.3	Pou4f3_predicted	XP_344676.2	ILMN_1362681	0006450332	S	475	ATGGGCATGAGTCACCCGCATGCCGTAGCACCTCACAGTGCCATGCCTGC	18	+	35601257-35601306	18p11	PREDICTED: Rattus norvegicus POU domain, class 4, transcription factor 3 (predicted) (Pou4f3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21489984-S	ILMN_268138	RETSAT	NM_145084.1	NM_145084.1		246298	21489984	NM_145084.1	Retsat	NP_659552.1	ILMN_1356474	0006290041	S	1506	ACTGTTCCCACAGCTGGAAGGCAAGGTGGAGAGTGTGACTGGAGGATCCC	4	+	106108166-106108190:106108339-106108363	4q33	Rattus norvegicus retinol saturase (all trans retinol 13,14 reductase) (Retsat), mRNA.	The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of the reaction: all-trans-13,14-dihydroretinol + acceptor = all-trans-retinol + reduced acceptor. Note that this reaction has only been observed to occur in the opposite direction [goid 51786] [evidence ISS]	Rmt7	Rmt7
Rattus norvegicus	RefSeq	GI_48675869-S	ILMN_263395	PPP1R3B	NM_138912.2	NM_138912.2		192280	48675869	NM_138912.2	Ppp1r3b	NP_620267.2	ILMN_1355213	0003440672	S	3993	AGCAAAGCTGTGTGTGTTTCCACGGTGTCGCTGCTAGTTCCCAGAGACCC	16	-	60552732-60552781	16q12.2	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 3B (Ppp1r3b), mRNA.	A protein complex that possesses magnesium-dependent protein serine/threonine phosphatase (AMD phosphatase) activity, and consists of a catalytic subunit and one or more regulatory subunits that dictates the phosphatase's substrate specificity, function, and activity [goid 164] [evidence IPI]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62646874-S	ILMN_62670	LOC362307	XM_342620.2	XM_342620.2		362307	62646874	XM_342620.2	LOC362307	XP_342621.2	ILMN_1354197	0003610301	S	1549	CAGCCCTGCCTGGAGTAACCGACGCTGCCCTGGAGAAATGTGATAGTTGA					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC362307), mRNA.					
Rattus norvegicus	RefSeq	GI_56799422-S	ILMN_60305	BLCAP	NM_133582.3	NM_133582.3		171113	82830418	NM_133582.3	Blcap	NP_598266.1	ILMN_1365091	0003390546	S	1860	CCAGGCACAGGGCAGAGCTGGAAGCAGGCATCTGGGGAGTGGGACTTTGA	3	-	148265717-148265766	3q42	Rattus norvegicus bladder cancer associated protein homolog (human) (Blcap), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105330	MGC105330
Rattus norvegicus	RefSeq	GI_62655179-S	ILMN_47839	RGD1565501_PREDICTED	XM_576584.2	XM_576584.2		501160	109486121	XM_576584.2	RGD1565501_predicted	XP_576584.2	ILMN_1348922	0005420070	S	857	ACGGGGATTGGTGGAAACCCGCTCAGTGTTCAAAGCGCGAATGCCAAGGC	9	+	69944372-69944421	9q32	PREDICTED: Rattus norvegicus similar to PSST739 protein (predicted) (RGD1565501_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652760-S	ILMN_274603	MKL1_PREDICTED	XM_001077101.1	XM_001077101.1		315151	109482601	XM_001077101.1	Mkl1_predicted	XP_001077101.1	ILMN_1353175	0002640717	S	4305	GAGAAGGGATAGAGCCATCAAAAGCAGTGCTGGGACAAAGGTGGGGAAGC				7q34	PREDICTED: Rattus norvegicus megakaryoblastic leukemia (translocation) 1 (predicted) (Mkl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649529	ILMN_297020	RGD1563016_PREDICTED	XM_001072309.1	XM_001072309.1		362574	109477093	XM_001072309.1	RGD1563016_predicted	XP_001072309.1	ILMN_1650291	0005130114	S	354	TGATGAAGTTTTCCATGCCCTGTCCCGTTGTCTGGGTGGGCTGCTTCGGC					PREDICTED: Rattus norvegicus RGD1563016 (predicted) (RGD1563016_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649091	ILMN_56661	LOC366379	XM_345538.2	XM_345538.2		366379	62649091	XM_345538.2	LOC366379	XP_345539.2	ILMN_1650774	0000580332	S	765	CTCGCTGCCTCAAACTAAGTCCAGAATTGAGGAAGCAGCCCCTGCTGGCC				5q24	PREDICTED: Rattus norvegicus similar to alpha-2u-globulin (LOC366379), mRNA.					
Rattus norvegicus	RefSeq	GI_16758219-S	ILMN_288957	SEMA6B	NM_053471.1	NM_053471.1		84609	16758219	NM_053471.1	Sema6b	NP_445923.1	ILMN_1650011	0004670370	S	3503	GCTGAGCCAATGTTGGTACTTCTGGAAAGAAACCCAGGGGATGGAGCCTC	Un|NW_047865.1	+	971276-971325		Rattus norvegicus sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B (Sema6b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643689-S	ILMN_59974	RGD1560205_PREDICTED	XM_227311.3	XM_227311.3		310548	109464976	XM_227311.3	RGD1560205_predicted	XP_227311.1	ILMN_1368556	0002450592	S	1636	GCTACCCTCTCTACTGGGACACCCAGCGTGCTTCCTTATACTTCAAGGCC	2	-	174571425-174571474	2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC27016 (predicted) (RGD1560205_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661952-S	ILMN_70405	LOC502010	XM_577438.1	XM_577438.1		502010	62661952	XM_577438.1	LOC502010	XP_577438.1	ILMN_1354733	0007000048	S	1169	CCCTGGGGTTGCCAGCACCTTCCCTACCTCCAGTGACTTTATCTACCTGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933435A13 (LOC502010), mRNA.					
Rattus norvegicus	RefSeq	GI_62664818-S	ILMN_63244	DOK4_PREDICTED	XM_341642.3	XM_341642.3		361364	109507696	XM_341642.3	Dok4_predicted	XP_341643.1	ILMN_1366860	0007050441	S	2377	AGGGAAGTGGCAGAGCCAGCCCAACTCTGACTGTGACCCAGGAACGACCA	19	+	10597148-10597197	19p12	PREDICTED: Rattus norvegicus docking protein 4 (predicted) (Dok4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_60223072-S	ILMN_63244	DOK4_PREDICTED	XM_341642.3	XM_341642.3		361364	109507696	XM_341642.3	Dok4_predicted	XP_341643.1	ILMN_1359654	0004780390	S	2773	CCTTCTGGTTTCTGGGCTAAGGACTGCGCTTGCTCACGTTGCCTCCTGGA	19	+	10597544-10597593	19p12	PREDICTED: Rattus norvegicus docking protein 4 (predicted) (Dok4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654878-S	ILMN_56957	LOC503246	XM_578777.1	XM_578777.1		503246	62654878	XM_578777.1	LOC503246	XP_578777.1	ILMN_1369117	0005220075	S	2535	TGCTGGTGGCCGTGGGGAGTGCAGGCCATGGAGCTACAGAGATCTGGTCC					PREDICTED: Rattus norvegicus similar to TRAM2 (LOC503246), mRNA.					
Rattus norvegicus	RefSeq	GI_47578070-S	ILMN_264920	OLR1000	NM_001000077.1	NM_001000077.1		288891	47578070	NM_001000077.1	Olr1000	NP_001000077.1	ILMN_1372215	0000050170	S	710	CCACCTGCTCCTCACATATGGTTGTTGTCTCCATTACTTATGGGAGTTGC	7	-	6429580-6429629	7q11	Rattus norvegicus olfactory receptor 1000 (Olr1000), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr7-6430339-6429404_ORF; Olr1000	ratchr7-6430339-6429404_ORF; Olr1000
Rattus norvegicus	RefSeq	GI_62666160-S	ILMN_61118	CDC2L6_PREDICTED	XM_228203.4	XM_228203.4		309804	109509547	XM_228203.4	Cdc2l6_predicted	XP_228203.3	ILMN_1372210	0006510373	S	2634	CCATGTACATCTCGGAGCTTCTCTCAAGGCGCTGCTGGTTCTTCAGTCTC	20	+	44666918-44666967	20q12	PREDICTED: Rattus norvegicus cell division cycle 2-like 6 (CDK8-like) (predicted) (Cdc2l6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641214-S	ILMN_52267	RGD1563498_PREDICTED	XM_344957.3	XM_344957.3		365361	109459287	XM_344957.3	RGD1563498_predicted	XP_344958.3	ILMN_1371750	0000520204	S	1055	GTGGAGGGGATTGTTTTGAGACAGGGATTTCCTATGTAGCACTTGCTGGC	1	+	178231398-178231447	1q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930404J24 (predicted) (RGD1563498_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641605-S	ILMN_301017	LRRC56	NM_001024902.1	NM_001024902.1		365389	67846083	NM_001024902.1	Lrrc56	NP_001020073.1	ILMN_1359142	0005340369	S	1966	CCATCCTGGGAAGGTTTGCAGGTTCCCTTATGTGGGGCAGTTCCTTTCTC	1	+	201404322-201404371	1q41	Rattus norvegicus leucine rich repeat containing 56 (Lrrc56), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1311654; MGC114503	RGD1311654; MGC114503
Rattus norvegicus	RefSeq	GI_38454269-S	ILMN_285349	CCDC127	NM_198766.1	NM_198766.1		308060	38454269	NM_198766.1	Ccdc127	NP_942061.1	ILMN_1356838	0001770138	S	900	GGCCAGAATGGGTCATTCACCATGGCAGTCTGCATTCTGGGGTCTCTGAT	1	-	29733249-29733298	1p11	Rattus norvegicus coiled-coil domain containing 127 (Ccdc127), mRNA.				MGC73017	MGC73017
Rattus norvegicus	RefSeq	GI_62655311-S	ILMN_272996	RGD1562431_PREDICTED	XM_237227.3	XM_237227.3		316465	62655311	XM_237227.3	RGD1562431_predicted	XP_237227.3	ILMN_1369402	0000780519	S	1029	CTCGAGGCGCAGGCATGGATACTCCAGGGAAGTCAACTCAGTGGATCGTG	9	+	68240685-68240734	9q32	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 81 (predicted) (RGD1562431_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56961619-S	ILMN_279933	HNRPM	NM_053876.1	NM_053876.1		116655	56961619	NM_053876.1	Hnrpm	NP_446328.1	ILMN_1349120	0000940717	S	1564	GTGCTGTACGCCGACATCAAGATGGAGAACGGAAAGTCCAAGGGGTGCGG	7	-	16150427-16150476	7q12	Rattus norvegicus heterogeneous nuclear ribonucleoprotein M (Hnrpm), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IMP]	MGC109545; Hnrpm4	MGC109545; Hnrpm4
Rattus norvegicus	RefSeq	GI_62648470-S	ILMN_47920	LOC500375	XM_575733.1	XM_575733.1		500375	62648470	XM_575733.1	LOC500375	XP_575733.1	ILMN_1356931	0004760369	S	251	CAATGGCAGTGGGTCTGGGAAAGACTATTCTCTCAGGATCAGTGGCCTGG					PREDICTED: Rattus norvegicus similar to Ig allele 91A3 V-region kappa chain (LOC500375), mRNA.					
Rattus norvegicus	RefSeq	GI_62647963	ILMN_278401	GAPDH	NM_017008.2	NM_017008.2		24383	31377487	NM_017008.2	Gapdh	NP_058704.1	ILMN_1649859	0001170044	S	1990	GGAGGGGCCTGGGGAGCCCTCCCTTCTCTCGAATACCATCAATAAAGTTC				4q42	Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence NAS]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	Gapd	Gapd
Rattus norvegicus	RefSeq	GI_62649814-S	ILMN_48954	SH3BGRL3_PREDICTED	XM_216547.4	XM_216547.4		298544	109475627	XM_216547.4	Sh3bgrl3_predicted	XP_216547.1	ILMN_1375152	0004150017	S	413	GGCCACAGACCCTACCCAGTCTTCACCAGGGCTCGGAACTAACTCCTTGT	5	-	152877625-152877674	5q36	PREDICTED: Rattus norvegicus SH3 domain binding glutamic acid-rich protein-like 3 (predicted) (Sh3bgrl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51556272-S	ILMN_293039	DNMT3B	NM_001003959.1	NM_001003959.1		444985	51556272	NM_001003959.1	Dnmt3b	NP_001003959.1	ILMN_1364125	0005270193	S	4205	GTCTCCACTGCTTCCTCACTTTTAGGTGCAAAGATGACAGGTGCCCAGAG	3	+	144069181-144069230	3q41	Rattus norvegicus DNA methyltransferase 3B (Dnmt3b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence IEP]; The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule [goid 10424] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence IMP]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt [goid 46499] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters [goid 45322] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpG [goid 51718] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_12738846-S	ILMN_289268	MERTK	NM_022943.1	NM_022943.1		65037	12738846	NM_022943.1	Mertk	NP_075232.1	ILMN_1372797	0000380731	S	2955	GGGGAGCCCATCACCAGATGAACTTCTGTTTGCAGACGACTCCTCGGGAG	3	+	116416345-116416394	3q36	Rattus norvegicus c-mer proto-oncogene tyrosine kinase (Mertk), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IMP]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IDA]	Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence NAS]	rdy	rdy
Rattus norvegicus	RefSeq	GI_62664040-S	ILMN_52744	RGD1308872_PREDICTED	XM_214620.4	XM_214620.4		291787	109506302	XM_214620.4	RGD1308872_predicted	XP_214620.4	ILMN_1370898	0007050603	S	2605	GACAGCAGTCACTCACGACTGGGAGGAGAGACAGTGGACATGGACTGTAC	18	+	3316302-3316351	18p13	PREDICTED: Rattus norvegicus similar to Retinoblastoma-binding protein 8 (RBBP-8) (CtBP interacting protein) (CtIP) (Retinoblastoma-interacting protein and myosin-like) (RIM) (predicted) (RGD1308872_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30061492-I	ILMN_299494	HAP1	NM_024133.2	NM_024133.2		29430	30061492	NM_024133.2	Hap1	NP_077047.1	ILMN_1375614	0006380008	I	1857	AGGGCTCACTTACCTCACCTTGGTCCCACTCGGTGTGCTGATTTGCATGG	10	-	89287099-89287148	10q32.1	Rattus norvegicus huntingtin-associated protein 1 (Hap1), transcript variant 1, mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence TAS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence TAS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IPI]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs [goid 45022] [evidence TAS]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_19424247-S	ILMN_262674	GIOT1	NM_133563.1	NM_133563.1		171090	19424247	NM_133563.1	Giot1	NP_598247.1	ILMN_1374199	0001410390	S	2396	TCAGTAAAGCCATGCATACCAAGCACATTTTCCCCCCATCTTCCTGGTAC	7	-	11736353-11736402	7q11	Rattus norvegicus gonadotropin inducible ovarian transcription factor 1 (Giot1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660357-S	ILMN_279666	TMPRSS11E_PREDICTED	XM_001074738.1	XM_001074738.1		305265	109500501	XM_001074738.1	Tmprss11e_predicted	XP_001074738.1	ILMN_1371647	0007100075	S	1420	GACACCCAAACCTGCAATCGGCCTCAATCTTACAACGGTGCCATCACCCC				14p21	PREDICTED: Rattus norvegicus transmembrane protease, serine 11e (predicted) (Tmprss11e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654846-S	ILMN_293040	PCAF	NM_001024252.1	NM_001024252.1		301164	66730401	NM_001024252.1	Pcaf	NP_001019423.1	ILMN_1359538	0001780619	S	521	CCCCCCGAGAGCGAGTACTACAAGTGCGCCAGCGTCCTGGAGAAGTTCTT	9	-	884796-884845	9q11	Rattus norvegicus p300/CBP-associated factor (Pcaf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The acetylation of the N-terminal lysine of proteins [goid 18076] [evidence IEA]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with the enzyme histone deacetylase [goid 42826] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638822-S	ILMN_68434	CNOT3_PREDICTED	XM_218187.4	XM_218187.4		308311	109457917	XM_218187.4	Cnot3_predicted	XP_218187.2	ILMN_1358380	0006040072	S	2690	CATGGGACACCCTCCCGCCCCAGGAAGCAGAGAAGGGATAGGGAAGTTTT	1	-	63868992-63869041	1q12	PREDICTED: Rattus norvegicus CCR4-NOT transcription complex, subunit 3 (predicted) (Cnot3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658106-S	ILMN_272543	RGD1305422_PREDICTED	XM_001065343.1	XM_001065343.1		303885	109494427	XM_001065343.1	RGD1305422_predicted	XP_001065343.1	ILMN_1373316	0003450593	S	2744	GGAGCCGCCCACGTAGAGAGATGCATGCTGTGCCAGGCCAAGGGCTTCAT				11q22	PREDICTED: Rattus norvegicus similar to mKIAA0226 protein (predicted) (RGD1305422_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652489-S	ILMN_48959	LOC500878	XM_576278.1	XM_576278.1		500878	62652489	XM_576278.1	LOC500878	XP_576278.1	ILMN_1372001	0006760097	S	891	TGTGGGTTGCAAACATCCGTGTGTTAACCAAGCCCTTACCCCATGTGCAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500878), mRNA.					
Rattus norvegicus	RefSeq	GI_62663921-S	ILMN_290608	LOC680523	XM_001057551.1	XM_001057551.1		680523	109505247	XM_001057551.1	LOC680523	XP_001057551.1	ILMN_1356470	0001050577	S	780	TTCTCATGTGGTCTGACACTGTTGAAATGGTGCGTGTGGCTGGGCACCCA	17	+	88399905-88399954	17q12.3	PREDICTED: Rattus norvegicus similar to Protein FAM23A (LOC680523), mRNA.					
Rattus norvegicus	RefSeq	GI_55741425-S	ILMN_302215	NFKBIB	NM_030867.2	NM_030867.2		81525	55741425	NM_030867.2	Nfkbib	NP_110494.2	ILMN_1350438	0000770278	S	1249	TGACATCGTGGTTCACAGTCGCAGGAGCCAAAACCAGCCACCTCCTTCCC	1	-	83865540-83865589	1q21	Rattus norvegicus nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta (Nfkbib), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A protein complex containing an I-kappaB protein and one or more copies of an NF-kappaB protein; mediates regulation of NF-kappaB activity by I-kappaB [goid 33256] [evidence IC ]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus [goid 7253] [evidence IMP]; The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus [goid 7253] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IC ]	MGC93398	MGC93398
Rattus norvegicus	RefSeq	GI_62663007-S	ILMN_65099	ING1_PREDICTED	XM_225039.3	XM_225039.3		306626	62663007	XM_225039.3	Ing1_predicted	XP_225039.3	ILMN_1369122	0002450239	S	1987	CAGCTCGCAACCACCTGTTTGTAGACCCTGTCCTTCACAGAAGCAAGTTC				16q12.5	PREDICTED: Rattus norvegicus inhibitor of growth family, member 1 (predicted) (Ing1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659153-S	ILMN_301582	VPS4B	NM_001025716.1	NM_001025716.1		360834	71043635	NM_001025716.1	Vps4b	NP_001020887.1	ILMN_1366691	0004210102	S	1290	CCCTCAAGGGCTGATCCTAACTGCATTGTAAATGACCTGCTGACACCCTG	13	-	12962819-12962868	13p13	Rattus norvegicus vacuolar protein sorting 4 homolog B (S. cerevisiae) (Vps4b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell [goid 5774] [evidence IEA]; The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell [goid 5774] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of endosomes [goid 7032] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence IEA]; The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 16197] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence ISS]; The directed movement of substances from endosomes to lysosomes by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the lysosome [goid 32510] [evidence IEA]; The directed movement of substances from endosomes to lysosomes by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the lysosome [goid 32510] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus [goid 33993] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus [goid 33993] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC116271	MGC116271
Rattus norvegicus	RefSeq	GI_62652470-S	ILMN_48021	MTSS1_PREDICTED	XM_343248.3	XM_343248.3		362918	109480741	XM_343248.3	Mtss1_predicted	XP_343249.3	ILMN_1349055	0004810053	S	2070	TCCAGAGAGCGAGGCTGAAGACCAGGAAAGAGACCCCTCAAGCACCAGTG	7	+	95945564-95945613	7q33	PREDICTED: Rattus norvegicus metastasis suppressor 1 (predicted) (Mtss1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377479-S	ILMN_269142	FSTL3	NM_053629.2	NM_053629.2		114031	31377479	NM_053629.2	Fstl3	NP_446081.1	ILMN_1365569	0000770398	S	1719	CCTCCAGTTTGGGGGCAAGGAGTTCCCAGAGTCTTTCTTACCACTCTCCA	7	-	11437383-11437432	7q11	Rattus norvegicus follistatin-like 3 (Fstl3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IMP]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Acts to negatively regulate the activity of activin, a nonsteroidal regulator synthesized in the pituitary gland and gonads that stimulates the secretion of follicle-stimulating hormone [goid 17106] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]	Flrg	Flrg
Rattus norvegicus	RefSeq	GI_62664777	ILMN_280988	CMTM1	NM_001029914.1	NM_001029914.1		291823	71361626	NM_001029914.1	Cmtm1	NP_001025085.1	ILMN_1650173	0006290102	S	428	AGTACGCTCCACACCATCCAGCTACCGACCCACAGTACGCTCCACACCAT	19	-	618368-618417	19p14	Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 1 (Cmtm1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC116183	MGC116183
Rattus norvegicus	RefSeq	GI_62661754-S	ILMN_59653	LOC361076	XM_341358.2	XM_341358.2		361076	62661754	XM_341358.2	LOC361076	XP_341359.2	ILMN_1354451	0001570014	S	6290	GGGAAGCGAAGTCCTCACCACTCAATACAGAGTTCTTGGAAGCTGCTGGC				15q11	PREDICTED: Rattus norvegicus similar to diacylglycerol kinase eta (LOC361076), mRNA.					
Rattus norvegicus	RefSeq	GI_27689950-S	ILMN_60788	RGD1562890_PREDICTED	XM_238219.2	XM_238219.2		294945	109464646	XM_238219.2	RGD1562890_predicted	XP_238219.1	ILMN_1361414	0006370273	S	116	TGCTGTCATCCTGAAAGTCCCGAGAAGAGTCCTCATGAATGGGCCAGTGG	2	-	104708515-104708564	2q24	PREDICTED: Rattus norvegicus RGD1562890 (predicted) (RGD1562890_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667169-S	ILMN_70070	LOC501616	XM_577014.1	XM_577014.1		501616	62667169	XM_577014.1	LOC501616	XP_577014.1	ILMN_1356794	0003140133	S	697	ACGATGTGTTGCATTCTTGGCTTCCTCACAGTAAAGGTAAAGCGGCCTTG					PREDICTED: Rattus norvegicus similar to LRRGT00149 (LOC501616), mRNA.					
Rattus norvegicus	RefSeq	GI_6978532-S	ILMN_266600	AQP5	NM_012779.1	NM_012779.1		25241	6978532	NM_012779.1	Aqp5	NP_036911.1	ILMN_1364664	0002570110	S	1195	TCCAGGACCACACCAGAAAGGGACGACAGCTTGCTTATCTCTCCCAACCC	7	+	138341030-138341079	7q36	Rattus norvegicus aquaporin 5 (Aqp5), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence TAS]	MGC124967	MGC124967
Rattus norvegicus	RefSeq	GI_62667534-S	ILMN_271818	ZFP275_PREDICTED	XM_001059933.1	XM_001059933.1		293849	109462347	XM_001059933.1	Zfp275_predicted	XP_001059933.1	ILMN_1361166	0006400301	S	1627	CAGCACTGCAGAAACACCAGCCCTCCCATCACGAGTAAACACTGCCGTGG				Xq37	PREDICTED: Rattus norvegicus zinc finger protein 275 (predicted) (Zfp275_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656527-S	ILMN_54379	MNT_PREDICTED	XM_220698.4	XM_220698.4		287521	109488521	XM_220698.4	Mnt_predicted	XP_220698.3	ILMN_1370684	0003940739	S	4166	AAAGAAGGGCAGGGGATGCCTGGAGGGCAGTTGGGTCACCATAGTCTCTC	10	+	62161428-62161477	10q24	PREDICTED: Rattus norvegicus max binding protein (predicted) (Mnt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_23097349-S	ILMN_279279	TOMM20	NM_152935.1	NM_152935.1		266601	23097349	NM_152935.1	Tomm20	NP_690918.1	ILMN_1371239	0004280139	S	607	GCTCGGGGGGATAAGGGCAAACTGTGCTTGTCATGAACTGTCTCACACTG	19	-	56851174-56851223	19q12	Rattus norvegicus translocase of outer mitochondrial membrane 20 homolog (yeast) (Tomm20), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence ISS]; A large complex of the mitochondrial outer membrane that mediates transport of proteins into all mitochondrial compartments [goid 5742] [evidence NAS]; A large complex of the mitochondrial outer membrane that mediates transport of proteins into all mitochondrial compartments [goid 5742] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The directed movement of a protein from the cytoplasm to the mitochondrion [goid 43681] [evidence ISS]; The directed movement of a protein from the cytoplasm to the mitochondrion [goid 43681] [evidence ISS]	Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence TAS]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IDA]	MGC93136	MGC93136
Rattus norvegicus	RefSeq	GI_62661159-S	ILMN_64302	FLNB_PREDICTED	XM_224561.4	XM_224561.4		306204	109501395	XM_224561.4	Flnb_predicted	XP_224561.4	ILMN_1362723	0000940168	S	7924	GGAGAAGGGAGATTACGTTCTGGCTGTGAAGTGGGGGGAAGAGCACATCC	15	-	18950057-18950106	15p14	PREDICTED: Rattus norvegicus filamin, beta (predicted) (Flnb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870519-S	ILMN_161838	PKD1	XM_340765.1	XM_340765.1			34870519	XM_340765.1	Pkd1		ILMN_2040785	0004670414	S	12435	TGACCGACTCAACCAGGCCACAGAGGATGTCTACCAGCTGGAGCAACAAC					Rattus norvegicus polycystic kidney disease 1 homolog (Pkd1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEA]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal [goid 50982] [evidence IEA]; The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal [goid 50982] [evidence ISS]; The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal [goid 50982] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_55742211-S	ILMN_291563	MRPL11	NM_001006973.1	NM_001006973.1		293666	55742211	NM_001006973.1	mrpl11	NP_001006974.1	ILMN_1363330	0003190040	S	554	GGCCGTGTTTTTGGCTGCTCAGAAGAGGCGGATTTGGCAGCTCAGGCAGA	1	+	207582843-207582892	1q43	Rattus norvegicus mitochondrial ribosomal protein L11 (mrpl11), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC94654	MGC94654
Rattus norvegicus	RefSeq	GI_13929043-S	ILMN_301544	SLC2A5	NM_031741.1	NM_031741.1		65197	13929043	NM_031741.1	Slc2a5	NP_113929.1	ILMN_1374014	0001410524	S	2054	CCATGTCACAAAGCTGAGGAACAGGCCACTTGGGGAGACACACGGAGCGT	5	+	167285649-167285698	5q36	Rattus norvegicus solute carrier family 2 (facilitated glucose/fructose transporter), member 5 (Slc2a5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of fructose into, out of, within or between cells. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey [goid 15755] [evidence IEP]; The directed movement of fructose into, out of, within or between cells. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey [goid 15755] [evidence IDA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IDA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of fructose from one side of the membrane to the other. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey [goid 5353] [evidence IDA]; Catalysis of the transfer of fructose from one side of the membrane to the other. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey [goid 5353] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IDA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652563-S	ILMN_52377	LOC500887	XM_576288.1	XM_576288.1		500887	62652563	XM_576288.1	LOC500887	XP_576288.1	ILMN_1350037	0001500292	S	2064	CCAGGAGAAAGAGGGCCTCCTGGAAAACCAGTATGTCACCTGCCGGGTCT					PREDICTED: Rattus norvegicus similar to collagen, type XXII, alpha 1 (LOC500887), mRNA.					
Rattus norvegicus	RefSeq	GI_40786454-S	ILMN_286204	BPGM	NM_199382.1	NM_199382.1		296973	40786454	NM_199382.1	Bpgm	NP_955414.1	ILMN_1362247	0000840309	S	1450	GCCAGTGAGAAGGACCGGGATTGGCACAGCCGTAGCCGTTTATGTTCTTC	4	+	61887881-61887930	4q22	Rattus norvegicus 2,3-bisphosphoglycerate mutase (Bpgm), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process aimed at the progression of an erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48821] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the transfer of a phosphate group from one position to another within a single molecule [goid 16868] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the transfer of a phosphate group from one position to another within a single molecule [goid 16868] [evidence IEA]	Ab2-098	Ab2-098
Rattus norvegicus	RefSeq	GI_62663817-S	ILMN_70409	LOC309038	XM_219392.3	XM_219392.3		309038	62663817	XM_219392.3	LOC309038	XP_219392.3	ILMN_1372121	0005690253	S	1077	GATGTTGGGAGCAGCCTCGAGATGGAGAAAGCAGCCTTCAAGTTAAAAAC					PREDICTED: Rattus norvegicus similar to envelope protein (LOC309038), mRNA.					
Rattus norvegicus	RefSeq	GI_62662868-S	ILMN_279517	SLC25A15	XM_001064514.1	XM_001064514.1		306574	109504329	XM_001064514.1	Slc25a15	XP_001064514.1	ILMN_1350697	0005550440	S	1500	GCTAGAGGGCCGCTGCTAAAAGCCGCTGAGCCTGTGCACTAAGAGGTTAG				16q12.5	PREDICTED: Rattus norvegicus solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15, transcript variant 2 (Slc25a15), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651184-S	ILMN_51071	OTUB2_PREDICTED	XM_234481.3	XM_234481.3		314405	62651184	XM_234481.3	Otub2_predicted	XP_234481.3	ILMN_1370072	0006040592	S	1190	TGTGAAAATGGGGATATCGGGCTTGTCTCACCCAGGGCAGTGGCCCTCAT				6q32	PREDICTED: Rattus norvegicus OTU domain, ubiquitin aldehyde binding 2 (predicted) (Otub2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17105373-S	ILMN_270691	PNLIPRP2	NM_057206.1	NM_057206.1		117554	17105373	NM_057206.1	Pnliprp2	NP_476554.1	ILMN_1356821	0006980278	S	1380	CTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTCTGGGAGCTTCGC	1	+	265283988-265283989:265285839-265285886	1q55	Rattus norvegicus pancreatic lipase-related protein 2 (Pnliprp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A defense response that is mediated by cells [goid 6968] [evidence ISS]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol [goid 47372] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13592050-S	ILMN_272179	RPL5	NM_031099.1	NM_031099.1		81763	13592050	NM_031099.1	Rpl5	NP_112361.1	ILMN_1358686	0006980397	S	19	TGCTACATACTGCGCATGCGTACGCGACTCCGGTCTTTTTCCCCCTAGCG	14	-	2404004-2404053	14p22	Rattus norvegicus ribosomal protein L5 (Rpl5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence TAS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with 5S ribosomal RNA, the smallest RNA constituent of a ribosome [goid 8097] [evidence TAS]; Interacting selectively with 5S ribosomal RNA, the smallest RNA constituent of a ribosome [goid 8097] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19924026-A	ILMN_294413	ADRA2B	NM_138505.1	NM_138505.1		24174	19924026	NM_138505.1	Adra2b	NP_612514.1	ILMN_1376424	0003450398	S	1884	GGCCCATTTGAAACCTTCCCTTGCTGGCTGTACTGTGGGATGGCTCTTCC	3	+	114869240-114869289	3q36	Rattus norvegicus adrenergic, alpha-2B-, receptor (Adra2b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence ISS];  [goid 4935] [evidence IEA];  [goid 4938] [evidence IDA];  [goid 4938] [evidence ISS];  [goid 4938] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718123-S	ILMN_66687	LOC317043	XM_229742.3	XM_229742.3		317043	62718123	XM_229742.3	LOC317043	XP_229742.3	ILMN_1351747	0002360670	S	1041	GTGGATTGTATGGCTGATGGTGAATGGATACCTTTACCTCACAGAGCGGG					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC317043), mRNA.					
Rattus norvegicus	RefSeq	GI_62641668-S	ILMN_268423	RGD1562011_PREDICTED	XM_001066085.1	XM_001066085.1		499297	109463267	XM_001066085.1	RGD1562011_predicted	XP_001066085.1	ILMN_1351316	0006660280	S	1220	CCTGGTCCTGGGGACTTTGTGGCTACCTCTTGTAAGCAGGGGAGAAGGGA				1q41	PREDICTED: Rattus norvegicus similar to MAS-related G-protein coupled receptor, member G (predicted) (RGD1562011_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33186917-S	ILMN_282892	MRGPRX1	NM_172158.2	NM_172158.2		282547	33186917	NM_172158.2	Mrgprx1	NP_750845.2	ILMN_1361744	0003940129	S	349	GGCAATGCAGCAATCATTCCCTATATCTCAGGCCTGAGCATCCTCAGTGC	1	-	97920554-97920603	1q22	Rattus norvegicus MAS-related GPR, member X1 (Mrgprx1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Mrgprc11; Snsr1	Mrgprc11; Snsr1
Rattus norvegicus	RefSeq	GI_62647716-S	ILMN_271091	CML3	XM_001074100.1	XM_001074100.1		113892	109473828	XM_001074100.1	Cml3	XP_001074100.1	ILMN_1355678	0004570112	S	763	CAAGCAAACCCAGCTATTTCAGCAAACCACTGACCCTCACTCTCAAGCAC				4q34	PREDICTED: Rattus norvegicus camello-like 3 (Cml3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence NAS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640818-S	ILMN_263416	RGD1562653_PREDICTED	XM_001068007.1	XM_001068007.1		293061	109462249	XM_001068007.1	RGD1562653_predicted	XP_001068007.1	ILMN_1356773	0006980059	S	1152	CACACCGAAGAAACAGGAAATCTGCCCAGCTAGCTATCCTTCTCCTCCTG				1q31	PREDICTED: Rattus norvegicus similar to hypothetical protein D030069K18 (predicted) (RGD1562653_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665985-S	ILMN_272727	RGD1560358_PREDICTED	XM_001058883.1	XM_001058883.1		361849	109510124	XM_001058883.1	RGD1560358_predicted	XP_001058883.1	ILMN_1365322	0006450152	S	3174	CGTAGGGCTTATTGTGTACAACGGTGCAATGGTGGATGTTGGGAGTCTCT				20q11	PREDICTED: Rattus norvegicus similar to cell division cycle and apoptosis regulator 1 (predicted), transcript variant 2 (RGD1560358_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657159-S	ILMN_69612	C1QL1_PREDICTED	XM_343971.3	XM_343971.3		363686	109489127	XM_343971.3	C1ql1_predicted	XP_343972.2	ILMN_1352396	0004780707	S	470	ACAACTACGATGCGGCCAGCGGCAAGTTTACATGCAACATTCCTGGCACC	10	-	92115779-92115828	10q32.1	PREDICTED: Rattus norvegicus complement component 1, q subcomponent-like 1 (predicted) (C1ql1_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.57038	ILMN_161342	RN.57038	Rn.57038		Rn.57038		23722477	BU759188			ILMN_1530203	0004280037	S	16	TTTGAGATTCCCACAACATGGTCCTCTTTATTTTCAGTCTCCCTACCTTT					UI-R-FF0-cpg-k-18-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cpg-k-18-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_12083616-S	ILMN_263293	ZIC1	NM_022677.1	NM_022677.1		64618	12083616	NM_022677.1	Zic1	NP_073168.1	ILMN_1353989	0000050195	S	1283	CGGTCCACCACACAGCCGGCCACAGCGCGCTCTCTTCCAATTTTAACGAA	8	-	96314703-96314752	8q31	Rattus norvegicus Zic family member 1 (odd-paired homolog, Drosophila) (Zic1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of smoothened signaling [goid 8589] [evidence IEA]; Any process that modulates the frequency, rate or extent of smoothened signaling [goid 8589] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642075	ILMN_49828	LOC502383	XM_577859.1	XM_577859.1		502383	62642075	XM_577859.1	LOC502383	XP_577859.1	ILMN_1650513	0005050692	S	360	TGCTCATAAGGACGAAACATCAAACGTCCCGCTGACTGGTATGAACCCCC					PREDICTED: Rattus norvegicus similar to translocase of inner mitochondrial membrane 23 (LOC502383), mRNA.					
Rattus norvegicus	RefSeq	GI_58865585-A	ILMN_289387	PIPOX	NM_001012009.1	NM_001012009.1		303272	58865585	NM_001012009.1	Pipox	NP_001012009.1	ILMN_1376549	0001340193	S	1388	ACAGCAAGGAGCTTTAAGATGGATGTCCCAATGGGGAGGGGCTCGAGACG	10	-	63921068-63921117	10q25	Rattus norvegicus pipecolic acid oxidase (Pipox), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]	The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety [goid 46653] [evidence IEA]	Catalysis of the reaction: sarcosine + H2O + O2 = glycine + formaldehyde + H2O2 [goid 8115] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654715-S	ILMN_48721	GTPBP2	XM_343535.3	XM_343535.3		363195	109485746	XM_343535.3	Gtpbp2	XP_343536.3	ILMN_1361101	0002970059	S	2524	TGCTATTTGTGGTGCTGGCTCAGGCGTGGGGTTGCCAGGCTAAGACTTGG	9	-	10378189-10378238	9q12	PREDICTED: Rattus norvegicus GTP binding protein 2 (Gtpbp2), mRNA.					
Rattus norvegicus	RefSeq	GI_57113820-S	ILMN_270136	V1RE4	NM_001008955.1	NM_001008955.1		494300	57113820	NM_001008955.1	V1re4	NP_001008955.1	ILMN_1368513	0004540180	S	303	CTTGAGTGTCTTCCAGGCAATCACCGTCAGCCCCACGAATTCCCACTGGA	1	-	57987412-57987461	1q12	Rattus norvegicus vomeronasal 1 receptor, E4 (V1re4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527407-S	ILMN_301585	CLP1	NM_001009599.1	NM_001009599.1		311166	57527407	NM_001009599.1	Clp1	NP_001009599.1	ILMN_1364136	0006290019	S	1491	GCAGAGAGCACATCCTCTACCTCTTGAAACAGTGGCAGTAGCCAGAGTCC	3	-	67934336-67934385	3q24	Rattus norvegicus CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) (Clp1), mRNA.		The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]		MGC94928; Ai462438; Heab	MGC94928; Ai462438; Heab
Rattus norvegicus	RefSeq	GI_62664987-S	ILMN_48661	LOC316920	XM_229489.3	XM_229489.3		316920	62664987	XM_229489.3	LOC316920	XP_229489.3	ILMN_1373610	0002760341	S	699	ACCAGCAACGTCCAGACCCACCATCATCAGGGTCCATGTGGTTCTTCTGA					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC316920), mRNA.					
Rattus norvegicus	RefSeq	GI_62643501-S	ILMN_269376	RGD1564666_PREDICTED	XM_001062492.1	XM_001062492.1		499627	109466717	XM_001062492.1	RGD1564666_predicted	XP_001062492.1	ILMN_2039749	0001710092	S	246	AACCTCTGCGTGCACATACTTGGCCCACATGAAGCCGGTGCTGGATGGCA				2q31	PREDICTED: Rattus norvegicus RGD1564666 (predicted) (RGD1564666_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978424-S	ILMN_302851	A2M	NM_012488.1	NM_012488.1		24153	6978424	NM_012488.1	A2m	NP_036620.1	ILMN_1352975	0002100041	S	4477	GCCTGAGGACGCAGTGAATAAGAAGTGTTTCGCCAGAGCCCTGACCTCAG	4	+	158153304-158153309:158153310-158153353	4q42	Rattus norvegicus alpha-2-macroglobulin (A2m), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEP]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus [goid 10037] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 17114] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with interleukin-8 [goid 19959] [evidence ISS]; Interacting selectively with interleukin-1 [goid 19966] [evidence ISS]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence TAS]; Interacting selectively with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages [goid 43120] [evidence ISS]	Mam; AI893533; MGC114358; A2maa; A2MAC1; A2m1; RATA2MAC1	Mam; AI893533; MGC114358; A2maa; A2MAC1; A2m1; RATA2MAC1
Rattus norvegicus	RefSeq	GI_62638467-S	ILMN_50873	LOC308129	XM_217829.3	XM_217829.3		308129	62638467	XM_217829.3	LOC308129	XP_217829.2	ILMN_1365760	0003870603	S	1599	ACGCCAAAGGAGTCACGAACCACCACAAGGCAGTCTCAGCTCCACAGAGA				1p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610009A07 (predicted) (LOC308129), mRNA.					
Rattus norvegicus	RefSeq	GI_17978458-S	ILMN_283655	ATP5I	NM_080481.1	NM_080481.1		140608	17978458	NM_080481.1	Atp5i	NP_536729.1	ILMN_1369137	0004610403	S	1	GAGGTCACGGACAAAATGGTGCCCCCGGTTCAGGTCTCTCCGCTCATCAA	14	+	1867344-1867358:1867359-1867393	14p22	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E (Atp5i), nuclear gene encoding mitochondrial protein, mRNA.	All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins [goid 276] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	Atp5k	Atp5k
Rattus norvegicus	RefSeq	GI_62643612-S	ILMN_56008	RGD1560220_PREDICTED	XM_578010.2	XM_578010.2		502525	109464733	XM_578010.2	RGD1560220_predicted	XP_578010.2	ILMN_1365131	0000630538	S	152	TATCGTTCTACTCAAGCGTACTGTGGCGGTGGGCTCGCGCTGGGATGAGC	2	-	120393125-120393174	2q25	PREDICTED: Rattus norvegicus similar to homolog of yeast TIM14 isoform c (predicted) (RGD1560220_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660842-S	ILMN_264959	LOC679409	XM_001054960.1	XM_001054960.1		679409	109501017	XM_001054960.1	LOC679409	XP_001054960.1	ILMN_1368766	0003610035	S	1897	CCGGGGTGGTCCAATGGGTGTGAGTATGGGACAGCCGAGTTATACCCAAG					PREDICTED: Rattus norvegicus similar to Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1), transcript variant 4 (LOC679409), mRNA.					
Rattus norvegicus	RefSeq	GI_62667296	ILMN_297101	RAB9B_PREDICTED	XM_001054647.1	XM_001054647.1		367915	109512369	XM_001054647.1	Rab9b_predicted	XP_001054647.1	ILMN_1649843	0005420551	S	944	GGCAGGTGTTAGCTGTAGAGGAGCAGCTGGAACACTGTATGCTAGGTCAC				Xq35	PREDICTED: Rattus norvegicus RAB9B, member RAS oncogene family (predicted) (Rab9b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651175-S	ILMN_50625	LOC299264	XM_216764.2	XM_216764.2		299264	62651175	XM_216764.2	LOC299264	XP_216764.1	ILMN_1357097	0005360647	S	563	TCAAAAGAAGTCAGCGCAGTAGTCCAGGCTCTTAGGGGAGGCTGAGGCGG					PREDICTED: Rattus norvegicus similar to ENSANGP00000002892 (predicted) (LOC299264), mRNA.					
Rattus norvegicus	RefSeq	GI_62662806-S	ILMN_48315	LOC498649	XM_573931.1	XM_573931.1		498649	62662806	XM_573931.1	LOC498649	XP_573931.1	ILMN_1363303	0004150458	S	648	GAGCAAAAAACCAAGGATGGCTTCACACCACTGCTGCTGGCACTCAGAGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921537P18 (LOC498649), mRNA.					
Rattus norvegicus	RefSeq	GI_62646063-S	ILMN_292944	REM1	NM_001025753.1	NM_001025753.1		366232	71043721	NM_001025753.1	Rem1	NP_001020924.1	ILMN_1372299	0003940358	S	718	TGTCATCGTGTACTCCATCGCAGATCGCAGCAGCTTTGAGAGTGCCTCCG	3	+	142983687-142983736	3q41	Rattus norvegicus RAS (RAD and GEM)-like GTP-binding 1 (Rem1), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC114556	MGC114556
Rattus norvegicus	RefSeq	GI_56605819-S	ILMN_275990	PAPD4	NM_001008372.1	NM_001008372.1		361878	56605819	NM_001008372.1	Papd4	NP_001008373.1	ILMN_1359851	0004060435	S	1553	CTCAGATGATTTCAGTCCGTGAGGCCAAAGCCATCCCAAGGCCAGATGAT	2	-	23423694-23423743	2q12	Rattus norvegicus PAP associated domain containing 4 (Papd4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule [goid 43631] [evidence ISS]	Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group [goid 4652] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93684	MGC93684
Rattus norvegicus	RefSeq	GI_62661597-S	ILMN_276902	EBPL_PREDICTED	XM_001063508.1	XM_001063508.1		361054	109502541	XM_001063508.1	Ebpl_predicted	XP_001063508.1	ILMN_1354774	0001740048	S	844	GTTGGGGTGTGGTTCAGTAGTGTTGTACTTGCCTAGCACTCACGAGGTCC				15p12	PREDICTED: Rattus norvegicus emopamil binding protein-like (predicted) (Ebpl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873719-S	ILMN_61983	KLHL11_PREDICTED	XM_213471.3	XM_213471.3		287706	109489014	XM_213471.3	Klhl11_predicted	XP_213471.2	ILMN_1357686	0007050079	S	1899	GGGGGCTGGAAGAACAGCGATGACATTGACAAGCAGTATCGGAAGGAGGC	10	-	89407869-89407918	10q32.1	PREDICTED: Rattus norvegicus kelch-like 11 (Drosophila) (predicted) (Klhl11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648109-S	ILMN_277319	LOC685529	XM_001064162.1	XM_001064162.1		685529	109472569	XM_001064162.1	LOC685529	XP_001064162.1	ILMN_1371346	0004810056	S	941	AGCTCACTGGCAAGGCCTCCTTCACACACTCCTTTGTGGCAGGCTGTGCA	4	+	157200962-157201011	4q42	PREDICTED: Rattus norvegicus similar to Mitochondrial glutamate carrier 2 (Glutamate/H(+) symporter 2) (Solute carrier family 25 member 18) (LOC685529), mRNA.					
Rattus norvegicus	RefSeq	GI_62640945-S	ILMN_281159	PRKRIR_PREDICTED	XM_001065056.1	XM_001065056.1		308845	109462446	XM_001065056.1	Prkrir_predicted	XP_001065056.1	ILMN_1370209	0005290707	S	2153	GCGTCTCAAAGCATACCTGCGGAACACTCTGACAGACCAGAGGTCAAGCA				1q32	PREDICTED: Rattus norvegicus protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (predicted) (Prkrir_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653028-S	ILMN_53399	WNT1	XM_235639.2	XM_235639.2		24881	62653028	XM_235639.2	Wnt1	XP_235639.1	ILMN_1358775	0002760041	S	1745	CCCCCTACACACACCTGTAGCTGAAGTGTTTCCGAGGTGAAAGGGCAAGG				7q36	PREDICTED: Rattus norvegicus wingless-type MMTV integration site family, member 1 (Wnt1), mRNA.		The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The process whose specific outcome is the progression of the diencephalon over time, from its formation to the mature structure. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex [goid 21536] [evidence ISS]; The creation of specific areas of progenitor domains along the anterior-posterior axis of the developing forebrain [goid 21797] [evidence ISS]; A developmental process occurring during brain development, independent of morphogenetic (shape) change, that is required for the midbrain-hindbrain boundary to attain its fully functional state. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 22004] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whereby a cell becomes capable of differentiating autonomously into a neuron regardless of its environment; upon determination, the cell fate cannot be reversed [goid 48664] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62638463-S	ILMN_277271	LOC679731	XR_005560.1	XR_005560.1		679731	109457703	XR_005560.1	LOC679731		ILMN_1362970	0001500546	S	1233	CGGCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGTTG	1	-	33797556-33797605	1p11	PREDICTED: Rattus norvegicus hypothetical protein LOC679731 (LOC679731), mRNA.					
Rattus norvegicus	RefSeq	GI_21326462-S	ILMN_280479	SIPA1L1	NM_139330.1	NM_139330.1		246212	21326462	NM_139330.1	Sipa1l1	NP_647546.1	ILMN_1356407	0005270332	S	6116	CTGAGGCTGCAGGAGGAGTCCCAGAATGCCTCGGACAAGCTGAAGAAGTT	6	+	106282857-106282906	6q24	Rattus norvegicus signal-induced proliferation-associated 1 like 1 (Sipa1l1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence IMP]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]	Spa-1; Spar; Spa1	Spa-1; Spar; Spa1
Rattus norvegicus	RefSeq	GI_62646986-S	ILMN_67934	LOC500072	XM_575423.1	XM_575423.1		500072	62646986	XM_575423.1	LOC500072	XP_575423.1	ILMN_1364256	0006400725	S	474	TGGATACTGAATTGAAGTGCTGCCGTTGTGAGCCTTGGAATGCCCCTGGC					PREDICTED: Rattus norvegicus similar to putative CAMP protein (LOC500072), mRNA.					
Rattus norvegicus	RefSeq	GI_62642350-S	ILMN_60057	CHUK_PREDICTED	XM_219857.4	XM_219857.4		309361	109460134	XM_219857.4	Chuk_predicted	XP_219857.3	ILMN_2039012	0001070195	S	2101	TCCAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCC	1	+	249153542-249153591	1q54	PREDICTED: Rattus norvegicus conserved helix-loop-helix ubiquitous kinase (predicted) (Chuk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20301971-S	ILMN_295627	POU3F1	NM_138838.1	NM_138838.1		192110	20301971	NM_138838.1	Pou3f1	NP_620193.1	ILMN_1361550	0005130670	S	2507	CGCGGGATGCAAGGATGCTGGGGGAACCCTGGGGAGAAACTCTCCAAATT	5	+	143984053-143984102	5q36	Rattus norvegicus POU class 3 homeobox 1 (Pou3f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IDA]; The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14044] [evidence ISS]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of Schwann cells in the peripheral nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22011] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	Tst-1; Oct-6; Otf6; Testes-1; Scip	Tst-1; Oct-6; Otf6; Testes-1; Scip
Rattus norvegicus	RefSeq	GI_62664925-S	ILMN_68488	LOC307731	XM_226326.3	XM_226326.3		307731	62664925	XM_226326.3	LOC307731	XP_226326.3	ILMN_1368060	0006370168	S	491	CACTGAGCTGTCACAGTCTCTGAACCCACAGCTGGGCACGGATGCAGACA					PREDICTED: Rattus norvegicus similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) (LOC307731), mRNA.					
Rattus norvegicus	RefSeq	GI_62663027-S	ILMN_66810	LOC502103	XM_577544.1	XM_577544.1		502103	62663027	XM_577544.1	LOC502103	XP_577544.1	ILMN_1370858	0001780338	S	353	AGCCAGCCTAGTAGAGGATCCATCGCAATGGAACAAGGAAAGAGTTGAGG					PREDICTED: Rattus norvegicus similar to Transcription elongation factor B polypeptide 3 (RNA polymerase II transcription factor SIII subunit A1) (SIII p110) (Elongin A) (EloA) (Elongin 110 kDa subunit) (MSTP059) (LOC502103), mRNA.					
Rattus norvegicus	RefSeq	GI_62645934-S	ILMN_265813	TASP1_PREDICTED	XM_001080195.1	XM_001080195.1		311468	109470761	XM_001080195.1	Tasp1_predicted	XP_001080195.1	ILMN_1369187	0001190332	S	1852	GTGGATGGTGTGGTAACTTAAATGGTTGTTCTCACCCCTCACACAGGGCA				3q36-q41	PREDICTED: Rattus norvegicus taspase, threonine aspartase 1 (predicted) (Tasp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662878-S	ILMN_288985	RGD1559811_PREDICTED	XR_008906.1	XR_008906.1		498657	109504439	XR_008906.1	RGD1559811_predicted		ILMN_1362358	0006660072	S	581	GGCCCTATGGGAGGAGGAAAAAGCCTTGTGGGTAGAGGAAAGAGCCCTGC				16q12.5	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700112P19 (predicted) (RGD1559811_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651667	ILMN_53396	LOC500788	XM_576174.1	XM_576174.1		500788	62651667	XM_576174.1	LOC500788	XP_576174.1	ILMN_1650657	0003990725	S	1611	GGCAGGCCTATCAGAATCACACCAGACTTCTCGCCAGAAACTATGAAGGC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500788), mRNA.					
Rattus norvegicus	RefSeq	GI_62649815-S	ILMN_49039	CCDC21	XM_342940.3	XM_342940.3		362622	109475628	XM_342940.3	Ccdc21	XP_342941.2	ILMN_1359111	0001940180	S	3572	TACCTTTCAGAGTAGCCACACCCAGTTGACTATCCCCTCAGCCTCTGGGC	5	-	152879940-152879989	5q36	PREDICTED: Rattus norvegicus coiled-coil domain containing 21 (Ccdc21), mRNA.					
Rattus norvegicus	RefSeq	GI_62641926-S	ILMN_286761	LOC499330	NM_001024292.1	NM_001024292.1		499330	66730336	NM_001024292.1	LOC499330	NP_001019463.1	ILMN_1370686	0002680300	S	1241	GTCAGCAGTTTAAGGCAGAGCCTGGAGACTTTGTGCTTGTAGCCATAGGC	1	+	222257136-222257185	1q43	Rattus norvegicus similar to Nicotinamide riboside kinase 1 (LOC499330), mRNA.		The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base [goid 19363] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + N-ribosylnicotinamide = ADP + nicotinamide ribonucleotide [goid 50262] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13540631-S	ILMN_285740	SLC16A3	NM_030834.1	NM_030834.1		80878	13540631	NM_030834.1	Slc16a3	NP_110461.1	ILMN_1350798	0001410064	S	2013	GTGGGAGGATCACCAAAGGGCCTGTCTCTAGGAGCTGTGTGGTTTCTGGG	10	+	110163144-110163182	10q32.3	Rattus norvegicus solute carrier family 16, member 3 (monocarboxylic acid transporter 4) (Slc16a3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the movement of a monocarboxylate, any compound containing a single carboxyl group (COOH or COO-), by uniport, symport or antiport across a membrane by a carrier-mediated mechanism [goid 15355] [evidence IEA]	Mct3	Mct3
Rattus norvegicus	RefSeq	GI_62641148-S	ILMN_49099	RGD1566189_PREDICTED	XM_574537.2	XM_574537.2		499244	109459270	XM_574537.2	RGD1566189_predicted	XP_574537.1	ILMN_1363374	0004590044	S	799	TGCACCGACCGCCTCAGCACCTCCACCCGAGTGAACCTCTAAAGCTACTA	1	-	169029778-169029827	1q33	PREDICTED: Rattus norvegicus similar to ferritin light chain (predicted) (RGD1566189_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576928-S	ILMN_265061	OLR801	NM_001001004.1	NM_001001004.1		405372	47576928	NM_001001004.1	Olr801	NP_001001004.1	ILMN_1374941	0006100537	S	762	GGCCCTTTTCACACATATGGAGCCCACCTCCACAGCTTCTGCTGAGCAAG	4	-	70249489-70249538	4q23	Rattus norvegicus olfactory receptor 801 (Olr801), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr801	Olr801
Rattus norvegicus	RefSeq	GI_62655380-S	ILMN_263827	CENTG2_PREDICTED	XM_001066299.1	XM_001066299.1		316611	109487490	XM_001066299.1	Centg2_predicted	XP_001066299.1	ILMN_1357547	0000130673	S	4180	GGCCTCAGCCACTCCCGATCCACAAAGTCTGAATCACCCAGGTTTCTGTC				9q35	PREDICTED: Rattus norvegicus centaurin, gamma 2 (predicted) (Centg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663329-S	ILMN_290285	PTPDC1_PREDICTED	XM_001057150.1	XM_001057150.1		291022	109505563	XM_001057150.1	Ptpdc1_predicted	XP_001057150.1	ILMN_1367657	0001090390	S	2197	GTGGACATGCTGGTCGACAGACACGCAGATGCTGCCGAAGCCCTGTTTTT				17p14	PREDICTED: Rattus norvegicus protein tyrosine phosphatase domain containing 1 (predicted) (Ptpdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651356-S	ILMN_59451	LOC500738	XM_576118.1	XM_576118.1		500738	62651356	XM_576118.1	LOC500738	XP_576118.1	ILMN_1370693	0006550136	S	480	ACCCTGTCACTTGCAGATGACATCTCTGCTGGAAGCTAAACCTGTTCCTG					PREDICTED: Rattus norvegicus similar to Ig heavy-chain V region precursor (LOC500738), mRNA.					
Rattus norvegicus	RefSeq	GI_62648145-S	ILMN_263454	USP5_PREDICTED	XM_001063322.1	XM_001063322.1		297593	109474194	XM_001063322.1	Usp5_predicted	XP_001063322.1	ILMN_1349407	0003870180	S	3069	TCCCTTGTGGTGAGGCAAAGGAGGCTATGAGGGAAATAGGACTCTCCCCC				4q42	PREDICTED: Rattus norvegicus ubiquitin specific protease 5 (isopeptidase T) (predicted), transcript variant 6 (Usp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718429-S	ILMN_302013	LOC691491	XM_001078524.1	XM_001078524.1		691491	109513621	XM_001078524.1	LOC691491	XP_001078524.1	ILMN_1366487	0005220497	S	728	GACGCAGTCCAGGACAAGATCTCCCTTGGAGAGAGGTGCTACAGGAGGAC	Un|NW_047891.1	-	218689-218738		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC691491), mRNA.					
Rattus norvegicus	RefSeq	GI_11559971-S	ILMN_263364	GRM8	NM_022202.1	NM_022202.1		60590	11559971	NM_022202.1	Grm8	NP_071538.1	ILMN_1349492	0006940450	S	2682	GGGAAATGACAGACCAAATGGCGAGGTGAAAAGTGAACTCTGTGAGAGTC	4	-	53983280-53983329	4q22	Rattus norvegicus glutamate receptor, metabotropic 8 (Grm8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence TAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a metabotropic glutamate receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7196] [evidence TAS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence NAS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence TAS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	A G-protein coupled receptor that is activated by L-AP-4 and inhibits adenylate cyclase activity [goid 1642] [evidence IDA]; A G-protein coupled receptor that is activated by L-AP-4 and inhibits adenylate cyclase activity [goid 1642] [evidence ISS]; A G-protein coupled receptor that is activated by L-AP-4 and inhibits adenylate cyclase activity [goid 1642] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Mglur8; mGlur; Gprc1h; Glur8	Mglur8; mGlur; Gprc1h; Glur8
Rattus norvegicus	RefSeq	GI_62663122-S	ILMN_290038	CCRK	NM_001025752.1	NM_001025752.1		364666	71043707	NM_001025752.1	Ccrk	NP_001020923.1	ILMN_1353263	0001580632	S	1561	GGACCTGCTGGGTCAGTTCCTCCTTTACCCTCCACGACAGCGTATTGCAG	17	-	6223093-6223142	17p14	Rattus norvegicus cell cycle related kinase (Ccrk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112893	MGC112893
Rattus norvegicus	RefSeq	Rn.50806	ILMN_270242	RIMBP2	XM_001073406.1	XM_001073406.1		266780	109497117	XM_001073406.1	Rimbp2	XP_001073406.1	ILMN_1530550	0003290280	S	6520	TTCCAGAAATTACAAAAAGAAAGGCAGTCTGAAAAGTATGTATAAAGAGT				12q14	PREDICTED: Rattus norvegicus RIM binding protein 2, transcript variant 4 (Rimbp2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660377	ILMN_293881	SRD5A3	NM_001013990.1	NM_001013990.1		305291	62078708	NM_001013990.1	Srd5a3	NP_001014012.1	ILMN_1650297	0006130397	S	744	AGGTGTGGTCATCCACTGCCAGCACAGAATCCCCTTTGGAGACTGGTTCG	14	-	34319138-34319186:34320117-34320117	14p11	Rattus norvegicus steroid 5 alpha-reductase 3 (Srd5a3), mRNA.					
Rattus norvegicus	RefSeq	GI_6978612-S	ILMN_300882	CCK	NM_012829.1	NM_012829.1		25298	6978612	NM_012829.1	Cck	NP_036961.1	ILMN_1365636	0003780634	S	366	CTGGACCCTAGCCACAGGATAAGTGACCGGGACTACATGGGCTGGATGGA	8	-	126492922-126492971	8q32	Rattus norvegicus cholecystokinin (Cck), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence NAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Portion of the axon proximal to the neuronal cell body, at the level of the axon hillock. The action potentials that propagate along the axon are generated at the level of this initial segment [goid 43194] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Portion of the neuronal cell soma from which the axon originates [goid 43203] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IMP]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IDA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IDA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IDA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Any process that reduces appetite [goid 32099] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of protein oligomerization [goid 32461] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IDA]; Any process that activates, maintains or increases the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive [goid 51901] [evidence IDA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IDA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence NAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IDA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62667599-S	ILMN_265477	RGD1562030_PREDICTED	XM_001053679.1	XM_001053679.1		309261	109462270	XM_001053679.1	RGD1562030_predicted	XP_001053679.1	ILMN_1356406	0000870040	S	806	ATCTGGTGCCTGACAGTGATCCCCCTCACTATGAGTTCCTATGGGGTCCA				Xq37	PREDICTED: Rattus norvegicus similar to Magea9 (predicted) (RGD1562030_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656222-S	ILMN_297835	TRIM16_PREDICTED	XM_001078237.1	XM_001078237.1		303214	109490984	XM_001078237.1	Trim16_predicted	XP_001078237.1	ILMN_1369593	0006350053	S	1305	TGGCCTGACCTGCAAAGGCATCGACCGTAAGGGGGAAGAACGAAACAGCT				10q23	PREDICTED: Rattus norvegicus tripartite motif protein 16 (predicted) (Trim16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24233543-S	ILMN_284727	SBK1	NM_147135.1	NM_147135.1		113907	24233543	NM_147135.1	Sbk1	NP_671476.1	ILMN_1353425	0003170309	S	815	CCGTGTGAAGCGAGTAAGCGGCACTATACCCTACACGGCGCCCGAGGTGT	1	+	185363101-185363150	1q36	Rattus norvegicus SH3-binding kinase 1 (Sbk1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Sbk	Sbk
Rattus norvegicus	RefSeq	GI_62652668-S	ILMN_58039	PPP1R16A_PREDICTED	XM_343274.3	XM_343274.3		362944	109480935	XM_343274.3	Ppp1r16a_predicted	XP_343275.1	ILMN_1367329	0001770091	S	2268	CTCGGAGGAGGCGTCTGTGGAGAAGAGGCCATGCTGTTTGCTCATGTGAA	7	+	114743924-114743972:114743973-114743973	7q34	PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 16A (predicted) (Ppp1r16a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646272-S	ILMN_53559	LOC499939	XM_580035.1	XM_580035.1		499939	62646272	XM_580035.1	LOC499939	XP_580035.1	ILMN_1357971	0006400471	S	258	GGTCTATGATGGGACCTGAGGCTAACACACGGAAAGAAGATGGACGTGGG					PREDICTED: Rattus norvegicus LOC499939 (LOC499939), mRNA.					
Rattus norvegicus	RefSeq	GI_62660443-S	ILMN_48223	RGD1563570_PREDICTED	XM_573594.2	XM_573594.2		498360	109499682	XM_573594.2	RGD1563570_predicted	XP_573594.1	ILMN_1362499	0004850021	S	56	TGTACTGCCCGGAAGCTCCGCAGTCACCGACAGGACCAGAAGTGGCAGGA	14	+	44696699-44696748	14p11	PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (predicted) (RGD1563570_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036672-S	ILMN_271960	AGT	NM_134432.2	NM_134432.2		24179	51036672	NM_134432.2	Agt	NP_602308.1	ILMN_1361016	0004050333	S	1786	AGCAGCCTCCTGGGGTGTGGGTTTGTTTGGACACTGGGGTGAGAGCCAGG	19	-	54738654-54738703	19q12	Rattus norvegicus angiotensinogen (serpin peptidase inhibitor, clade A, member 8) (Agt), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 44444] [evidence IDA]	Disruption of theca cell layer releasing follicular fluid and/or the oocyte [goid 1543] [evidence ISS]; Disruption of theca cell layer releasing follicular fluid and/or the oocyte [goid 1543] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEA]; The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence ISS]; The decrease in blood vessel diameter as a result of the release of angiotensin into the blood stream [goid 1998] [evidence ISS]; The decrease in blood vessel diameter as a result of the release of angiotensin into the blood stream [goid 1998] [evidence IEA]; The physiological response of the kidneys to a decrease in blood flow [goid 1999] [evidence ISS]; The physiological response of the kidneys to a decrease in blood flow [goid 1999] [evidence IEA]; The process by which an increase in active angiotensin stimulates the adrenal cortices to secrete aldosterone [goid 2018] [evidence ISS]; The process by which an increase in active angiotensin stimulates the adrenal cortices to secrete aldosterone [goid 2018] [evidence IEA]; The process by which angiotensin directly modulates the rate of urine output by the kidney [goid 2019] [evidence ISS]; The process by which angiotensin directly modulates the rate of urine output by the kidney [goid 2019] [evidence ISS]; The process by which angiotensin directly modulates the rate of urine output by the kidney [goid 2019] [evidence IEA]; The process by which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system [goid 2035] [evidence ISS]; The process by which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system [goid 2035] [evidence IEA]; The regulation of the levels, transport, and metabolism of sodium ions within a cell or between a cell and its external environment [goid 6883] [evidence IMP]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IMP]; The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds [goid 7588] [evidence ISS]; The establishment of the barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier [goid 8065] [evidence ISS]; The establishment of the barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier [goid 8065] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment [goid 9651] [evidence ISS]; Any process that increases the rate, frequency, or extent of the orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 10595] [evidence ISS]; Any process that increases the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division [goid 10613] [evidence IDA]; Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine [goid 14061] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus. This process occurs as part of the regulation of muscle adaptation [goid 14873] [evidence IMP]; The process of renal sodium excretion [goid 30147] [evidence IMP]; The process of renal sodium excretion [goid 30147] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids [goid 45723] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids [goid 45723] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 45742] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism [goid 46622] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism [goid 46622] [evidence IEA]; A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 48143] [evidence ISS]; A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 48143] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IDA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population [goid 48659] [evidence ISS]; The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population [goid 48659] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the nerve growth factor receptor signaling pathway [goid 51387] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the nerve growth factor receptor signaling pathway [goid 51387] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA];  [goid 4937] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; Interacting selectively with an angiotensin receptor [goid 31701] [evidence IMP]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence ISS]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IMP]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IEA]; Interacting selectively with a type 2 angiotensin receptor [goid 31703] [evidence ISS]; Interacting selectively with a type 2 angiotensin receptor [goid 31703] [evidence IMP]; Interacting selectively with a type 2 angiotensin receptor [goid 31703] [evidence IEA]	AngII; PAT; MGC105326; Ang; ANRT	AngII; PAT; MGC105326; Ang; ANRT
Rattus norvegicus	RefSeq	GI_62660097-A	ILMN_283316	NKX6-1	NM_031737.1	NM_031737.1		65193	13929035	NM_031737.1	Nkx6-1	NP_113925.1	ILMN_1376510	0006660672	S	2678	CCCACGAGCTTCTCACACCAGCCTTTGGGTTCCCTTCCGAATTTGCACAG	14	+	9221133-9221182	14p22	Rattus norvegicus NK6 homeobox 1 (Nkx6-1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results the commitment of a cell to become a motor neuron in the ventral spinal cord [goid 21912] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in the commitment of a cell to become an interneuron in the ventral spinal cord [goid 21913] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of glia cell differentiation [goid 45686] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of glia cell differentiation [goid 45686] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of glia cell differentiation [goid 45687] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of glia cell differentiation [goid 45687] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system [goid 48709] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Nkx61; Nkx6a; Nkx6.1	Nkx61; Nkx6a; Nkx6.1
Rattus norvegicus	RefSeq	GI_47577420-S	ILMN_288118	OLR458	NM_001000292.1	NM_001000292.1		295728	47577420	NM_001000292.1	Olr458	NP_001000292.1	ILMN_1356549	0006520546	S	575	CCCATGTCTATGTGAAAATCCTCTCCAGTATGGTGGGCTTCACTGTGCTC	3	+	69022452-69022501	3q24	Rattus norvegicus olfactory receptor 458 (Olr458), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr458	Olr458
Rattus norvegicus	RefSeq	GI_6981149-S	ILMN_268999	LEPR	NM_012596.1	NM_012596.1		24536	6981149	NM_012596.1	Lepr	NP_036728.1	ILMN_1373257	0004760292	S	3154	CCTGGGAGATAGAGGCCCAGGCATTTTTCCTTTTATCAGATCATCCACCC	5	+	122503416-122503451	5q33	Rattus norvegicus leptin receptor (Lepr), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEP]; The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances [goid 6091] [evidence NAS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients [goid 31669] [evidence IEP]; A series of molecular signals generated as a consequence of leptin binding to a cell surface receptor [goid 33210] [evidence IDA]; A series of molecular signals generated as a consequence of leptin binding to a cell surface receptor [goid 33210] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence IEA]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a protein hormone to initiate a change in cell activity [goid 16500] [evidence IMP]; Combining with a protein hormone to initiate a change in cell activity [goid 16500] [evidence IDA]; Combining with a protein hormone to initiate a change in cell activity [goid 16500] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]	Fa	Fa
Rattus norvegicus	RefSeq	GI_62647388-S	ILMN_64619	LOC500163	XM_575515.1	XM_575515.1		500163	62647388	XM_575515.1	LOC500163	XP_575515.1	ILMN_1358904	0002350026	S	8	GCTGGCCCATGCTCAGTTTCTTGGGTTATTGTTGCTCTGGTTTCCAGGTG				4q31	PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC500163), mRNA.					
Rattus norvegicus	RefSeq	GI_62643987-S	ILMN_299527	RGD1561160_PREDICTED	XR_007296.1	XR_007296.1		502552	109467058	XR_007296.1	RGD1561160_predicted		ILMN_1350634	0006760242	S	758	ACCTCCACAGCAACTCAATGGCCACTGGTTTGTTGGTAGCTGCTGATGAT				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1561160_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648634-S	ILMN_56115	LOC500408	XM_580061.1	XM_580061.1		500408	62648634	XM_580061.1	LOC500408	XP_580061.1	ILMN_1359790	0001570504	S	444	CTGCACGCCGGAGCCTTTACCTTCTTCCTTTGCCATCGTCTCCGCAGAGT					PREDICTED: Rattus norvegicus LOC500408 (LOC500408), mRNA.					
Rattus norvegicus	RefSeq	GI_11968133-S	ILMN_267528	TIMM8B	NM_022541.1	NM_022541.1		64372	11968133	NM_022541.1	Timm8b	NP_071986.1	ILMN_1363721	0001340253	S	219	GCCATCACCGGTCGTTTTGCCCAGATCGTACAGAAAGGAGGGCAGTAGGC	8	+	53965803-53965851:53965852-53965852	8q23	Rattus norvegicus translocase of inner mitochondrial membrane 8 homolog b (yeast) (Timm8b), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IEA]	The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the mitochondria inner membrane. Inner membrane proteins are first imported into the matrix space where the matrix-targeting sequence is removed; how these proteins then are incorporated into the inner membrane is not known [goid 45039] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ddp2	Ddp2
Rattus norvegicus	RefSeq	GI_62639759-S	ILMN_277774	RGD1309316_PREDICTED	XM_001079852.1	XM_001079852.1		292913	109461951	XM_001079852.1	RGD1309316_predicted	XP_001079852.1	ILMN_1360013	0000630270	S	1376	AAAGGAGACTGGGAGACAATGCCACCACATCAGACTGGGCCTCTGGCTCA				1q22	PREDICTED: Rattus norvegicus similar to 4930403C10Rik protein (predicted) (RGD1309316_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576554-S	ILMN_269100	OLR1641	NM_001000100.1	NM_001000100.1		290050	47576554	NM_001000100.1	Olr1641	NP_001000100.1	ILMN_1357194	0001780035	S	902	ATTCTGCCCTGAAGAGGCTAAGAGCAGGTAGAGGGAATGTGGGTGGAGAC	15	-	27869377-27869426	15p14	Rattus norvegicus olfactory receptor 1641 (Olr1641), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1641; TB 641	Olr1641; TB 641
Rattus norvegicus	RefSeq	GI_62662930-S	ILMN_58334	LOC498662	XM_573943.2	XM_573943.2		498662	109503564	XM_573943.2	LOC498662	XP_573943.1	ILMN_1369880	0003060056	S	1994	CTCGCAGTGATCCGTGGTAGGGTTGAGTGGCCGGGTTTACTAGATCCACC	16	+	80489284-80489333	16q12.5	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610019F03 (LOC498662), mRNA.					
Rattus norvegicus	RefSeq	GI_34857240-S	ILMN_296973	RGD1563786_PREDICTED	XR_008108.1	XR_008108.1		499183	109462162	XR_008108.1	RGD1563786_predicted		ILMN_1374411	0000360215	S	540	CCCCAAAGGGGAGACCAAAAAGAAGTTCAAGGACCCCGATGCCCCCAGGA				1q31	PREDICTED: Rattus norvegicus similar to Hmgb1 protein (predicted) (RGD1563786_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640726-S	ILMN_296973	RGD1563786_PREDICTED	XR_008108.1	XR_008108.1		499183	109462162	XR_008108.1	RGD1563786_predicted		ILMN_1372336	0007100025	S	2182	TTAAGCCCGAACTCATTCATTAATCTGCTTAGTTTAGGGAACAATTTGGC				1q31	PREDICTED: Rattus norvegicus similar to Hmgb1 protein (predicted) (RGD1563786_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577936-S	ILMN_264448	OLR1130	NM_001000428.1	NM_001000428.1		300400	47577936	NM_001000428.1	Olr1130	NP_001000428.1	ILMN_1358036	0002230082	S	876	GAGGAACAGGGATATAAAGGAGGCACTGAAGAAGGTAATTGGTAGGCCAG	8	-	17104396-17104445	8q13	Rattus norvegicus olfactory receptor 1130 (Olr1130), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1130; ratchr8-17105321-17104383_ORF	Olr1130; ratchr8-17105321-17104383_ORF
Rattus norvegicus	RefSeq	GI_62643626-S	ILMN_56838	LOC365775	XM_578013.1	XM_578013.1		365775	62643626	XM_578013.1	LOC365775	XP_578013.1	ILMN_1352548	0006130102	S	336	CAGGACTGTCAACTCTTACCTCCGGGCATCCTTGATTCGGGGCATCCAGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC365775), mRNA.					
Rattus norvegicus	RefSeq	GI_62662573-S	ILMN_63066	LOC361140	XM_341426.2	XM_341426.2		361140	62662573	XM_341426.2	LOC361140	XP_341427.2	ILMN_1371564	0000460113	S	4889	GCATGGATCCCTTACTGGATTAGTCCAGGACAATAGGATACATCGAGGGG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20035 (LOC361140), mRNA.					
Rattus norvegicus	RefSeq	GI_62651817-S	ILMN_61173	ZNF124_PREDICTED	XM_234843.4	XM_234843.4		314586	109480313	XM_234843.4	Znf124_predicted	XP_234843.4	ILMN_1374088	0001500324	S	1771	AGGTGCTCCACGTACCTTCGCAACCATGAAAGAACTCACACTGGAGAGAA	7	-	13709817-13709866	7q11	PREDICTED: Rattus norvegicus zinc finger protein 124 (HZF-16) (predicted) (Znf124_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012413-S	ILMN_283216	H2-M10.6	NM_001008851.1	NM_001008851.1		414787	57012413	NM_001008851.1	H2-M10.6	NP_001008851.1	ILMN_1372644	0000630133	S	577	GATGGCAATGTCACCCTGAGGTGCTGGGCCTTAGGCTTCTACCCAGCTGA	20	+	2076488-2076537	20p12	Rattus norvegicus histocompatibility 2, M region locus 10.6 (H2-M10.6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62649754-S	ILMN_68634	PTPRU	XM_342930.2	XM_342930.2		116680	62649754	XM_342930.2	Ptpru	XP_342931.2	ILMN_1372434	0002760154	S	5362	AGGTCCCTGTGGCTCTTGGTGAGGTGGTCACTGGATCAGGGTGGAGTAGA				5q36	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, U (Ptpru), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence NAS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650896-S	ILMN_281464	TEX21	NM_001025658.1	NM_001025658.1		299152	71043825	NM_001025658.1	Tex21	NP_001020829.1	ILMN_1359889	0006650279	S	1612	ATGCTGAAAGGGGTCTCAGGACGAGAGCAAGAGCTCGCCGACTTTCGGGA	6	-	98798269-98798286:98803378-98803409	6q24	Rattus norvegicus testis expressed gene 21 (Tex21), mRNA.				MGC114468	MGC114468
Rattus norvegicus	RefSeq	GI_62658261-S	ILMN_58691	RGD1564601_PREDICTED	XM_577195.2	XM_577195.2		363830	109493584	XM_577195.2	RGD1564601_predicted	XP_577195.2	ILMN_1365918	0002650066	S	375	GAAGAGGATGGAGAGGGAGTGGGAAGAAGAAAAGTAGCGGACAGATTCGG	11	-	84997733-84997746:84997747-84997782	11q23	PREDICTED: Rattus norvegicus similar to put. V(preB)1 protein (predicted) (RGD1564601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981069-S	ILMN_56825	ID1	NM_012797.2	NM_012797.2		25261	82617571	NM_012797.2	Id1	NP_036929.2	ILMN_1365871	0000050672	S	471	ATGTGTTCCAGCCGACGACCGCATCTTGTGTCGCTGAGGCGGCGCACTGA	3	+	143086853-143086889:143086890-143086902	3q41	Rattus norvegicus inhibitor of DNA binding 1 (Id1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]	Idb1; ID125A; MGC156482	Idb1; ID125A; MGC156482
Rattus norvegicus	RefSeq	GI_62648640-S	ILMN_56488	LOC297763	XM_232590.2	XM_232590.2		297763	62648640	XM_232590.2	LOC297763	XP_232590.2	ILMN_1359744	0004610253	S	856	ACAGATGCCTGCTGTCTAAGTGGGAGCTTATCCAGCCCAGAGCTGCCCTG					PREDICTED: Rattus norvegicus hypothetical LOC297763 (LOC297763), mRNA.					
Rattus norvegicus	RefSeq	GI_47576132-S	ILMN_295940	OLR1382	NM_214831.1	NM_214831.1		287093	47576132	NM_214831.1	Olr1382	NP_999996.1	ILMN_1353692	0003940592	S	871	AGCCTGAGGAACAGGGACCTGAAATGGTCACTACGAAAACTTGTCCACAG	10	-	12751820-12751869	10q12	Rattus norvegicus olfactory receptor 1382 (Olr1382), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1382	Olr1382
Rattus norvegicus	RefSeq	GI_62652555-S	ILMN_52030	RGD1562153_PREDICTED	XM_576285.2	XM_576285.2		500885	109480858	XM_576285.2	RGD1562153_predicted	XP_576285.1	ILMN_1351016	0000770154	S	83	GCCTTCCTCAAAAAGTCTGGGAAGCTGAAAGTCCCCAAATGGGTGGACAC	7	-	108155616-108155665	7q34	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (predicted) (RGD1562153_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655811	ILMN_282617	RGD1304601	NM_001024990.1	NM_001024990.1		302972	68163420	NM_001024990.1	RGD1304601	NP_001020161.1	ILMN_1651100	0004590047	S	1303	CAGGCCACTTACATCTCTGGTGAACTGGTGTGGCAGGCAGAGGAAGCTGG	10	-	13407230-13407279	10q12	Rattus norvegicus similar to RIKEN cDNA 5730457F11 (RGD1304601), mRNA.				MGC109150	MGC109150
Rattus norvegicus	RefSeq	GI_62649481-S	ILMN_295461	N22.1	XM_001071721.1	XM_001071721.1		313527	109477075	XM_001071721.1	N22.1	XP_001071721.1	ILMN_1366166	0001050647	S	962	GATGTGAGCCCCAGGGGGGCCTCCTCCAGGGATAATAAACCGTTTTTCAG				5q36	PREDICTED: Rattus norvegicus putative tctex1/2 family protein (N22.1), mRNA.					
Rattus norvegicus	RefSeq	GI_62649510-S	ILMN_295461	N22.1	XM_001071721.1	XM_001071721.1		313527	109477075	XM_001071721.1	N22.1	XP_001071721.1	ILMN_1373850	0006450170	S	649	TACTCCGGTACTGAGGCGGGGAAACTGGTGCAGGCGCTGTGTGAACAGAT				5q36	PREDICTED: Rattus norvegicus putative tctex1/2 family protein (N22.1), mRNA.					
Rattus norvegicus	RefSeq	GI_62638330-S	ILMN_66845	LOC365058	XM_344799.2	XM_344799.2		365058	62638330	XM_344799.2	LOC365058	XP_344800.2	ILMN_1370496	0003610497	S	782	ACAGGCCACAGTCCTGTGTATAATGCAGGTTGCACCTACGGGTGAGGTGT					PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC365058), mRNA.					
Rattus norvegicus	RefSeq	GI_28212239-S	ILMN_265210	TAAR6	NM_175584.1	NM_175584.1		294124	28212239	NM_175584.1	Taar6	NP_783174.1	ILMN_1355620	0004210673	S	534	GGAAGTATCCGATGCCGTCAACTGCGTAGGGGGGTGTCAGGTAGTTGTGA	1	+	21985191-21985240	1p12	Rattus norvegicus trace-amine-associated receptor 6 (Taar6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta4; TRAR4	Ta4; TRAR4
Rattus norvegicus	RefSeq	GI_62641303-S	ILMN_264381	LOC308990	NM_001025001.1	NM_001025001.1		308990	68163456	NM_001025001.1	LOC308990	NP_001020172.1	ILMN_1350326	0006020161	S	1374	ACAGCCTGTCAGAATGAAGAGGTCCTGTCCGCGATGCCAGAGCTAGTGAC	1	+	186344682-186344731	1q36	Rattus norvegicus hypothetical protein LOC308990 (LOC308990), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC108906; MGC108938	MGC108906; MGC108938
Rattus norvegicus	RefSeq	GI_62653943-S	ILMN_286846	LOC503202	XR_008053.1	XR_008053.1		503202	109484535	XR_008053.1	LOC503202		ILMN_1371387	0002850086	S	351	GAACACCATCTCCTACCCTGAATGCATGACTCAGCTTTACGCTTTCCTTG					PREDICTED: Rattus norvegicus similar to olfactory receptor Olr1323 (LOC503202), mRNA.					
Rattus norvegicus	RefSeq	GI_62639716-S	ILMN_274379	RGD1561972_PREDICTED	XM_001080694.1	XM_001080694.1		308581	109461909	XM_001080694.1	RGD1561972_predicted	XP_001080694.1	ILMN_1366952	0002060170	S	1774	CCACCAGTGTGAGGCCCTTCTCAGTAGACAGCCCACCCATTTCCACCACT				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32658 (predicted) (RGD1561972_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648154-S	ILMN_265673	ING4	XM_001064956.1	XM_001064956.1		297597	109474221	XM_001064956.1	Ing4	XP_001064956.1	ILMN_1352413	0007050451	S	1267	CTCCATGGGGAGGGTCTTCTAGGTCATTTGGGCTGTGGCCTAGTTGAGTG				4q42	PREDICTED: Rattus norvegicus inhibitor of growth family, member 4 (Ing4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6473] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism [goid 45926] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758655-S	ILMN_270986	BAK1	NM_053812.1	NM_053812.1		116502	16758655	NM_053812.1	Bak1	NP_446264.1	ILMN_1372846	0004570168	S	1855	GAGGCAGATGGATTCCCCCACCTCGCCCTCGGTGTCTGGAAATAAACGGT	20	-	5255984-5256033	20p12	Rattus norvegicus BCL2-antagonist/killer 1 (Bak1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; Any small opening in a membrane that allows the passage of gases and/or liquids [goid 46930] [evidence ISS]	The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus [goid 9620] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin are a toxic chemical substance produced by fungi [goid 10046] [evidence ISS]; The directed movement of ions to establish or maintain an electrochemical gradient across a membrane [goid 10248] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer [goid 43496] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer [goid 43497] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IPI]	MGC108627	MGC108627
Rattus norvegicus	RefSeq	GI_11968115-S	ILMN_302712	PRL7A3	NM_022530.1	NM_022530.1		64361	11968115	NM_022530.1	Prl7a3	NP_071975.1	ILMN_1349108	0000380093	S	146	CCGAGGCCTGTTTGATACTGCCACAAGACTGTCTCAGGATATCAGGGACC	17	+	43660759-43660808	17p11	Rattus norvegicus prolactin family 7, subfamily a, member 3 (Prl7a3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence NAS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlfp; Prlpf	Prlfp; Prlpf
Rattus norvegicus	RefSeq	GI_62662535-S	ILMN_57064	LOC502069	XM_577501.1	XM_577501.1		502069	62662535	XM_577501.1	LOC502069	XP_577501.1	ILMN_1364949	0004230273	S	448	TCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAA					PREDICTED: Rattus norvegicus similar to putative 50S ribosomal protein L17 (LOC502069), mRNA.					
Rattus norvegicus	RefSeq	GI_62655534-S	ILMN_53765	LOC501203	XM_343643.2	XM_343643.2		501203	62655534	XM_343643.2	LOC501203	XP_343644.2	ILMN_1353763	0006180154	S	1258	CTCAGCCACTTTGGGCCACGTGTACCTTTATCATCAGACTGGAAACGGGA					PREDICTED: Rattus norvegicus similar to Myosin regulatory light chain 2-A, smooth muscle isoform (Myosin RLC-A) (LOC501203), mRNA.					
Rattus norvegicus	RefSeq	GI_47576344-S	ILMN_294229	OLR1533	NM_001000496.1	NM_001000496.1		304026	47576344	NM_001000496.1	Olr1533	NP_001000496.1	ILMN_1351865	0000780576	S	351	GGCCTACGACCGCTATGTAGCCATATGCAACCCTCTGCTCTATCTTGTGG	11	-	41855768-41855817	11q12	Rattus norvegicus olfactory receptor 1533 (Olr1533), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr11-41913757-41912837_ORF; Olr1533	ratchr11-41913757-41912837_ORF; Olr1533
Rattus norvegicus	RefSeq	GI_62661173-S	ILMN_65002	LOC498466	XM_573723.1	XM_573723.1		498466	62661173	XM_573723.1	LOC498466	XP_573723.1	ILMN_1371025	0003520070	S	873	ACCTGTCCACCAGGAGCAGTGAGGGAGCAAAGATTGACAACTCCTCCCAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F09 (LOC498466), mRNA.					
Rattus norvegicus	RefSeq	GI_13929021-S	ILMN_286066	LIMK1	NM_031727.1	NM_031727.1		65172	13929021	NM_031727.1	Limk1	NP_113915.1	ILMN_1372778	0003170161	S	3049	GGGGTGGGAGGGCCATCTCTTCACTCTGCTTCAGTTGAACACCTAGGGAC	12	+	23125509-23125558	12q12	Rattus norvegicus LIM motif-containing protein kinase 1 (Limk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758949-S	ILMN_269883	CSNK1A1	NM_053615.1	NM_053615.1		113927	16758949	NM_053615.1	Csnk1a1	NP_446067.1	ILMN_1354478	0003780100	S	881	ACACGTTTGATTGGACGATGTTAAAGCAGAAAGCAGCCCAGCAGGCAGCC	18	+	57564471-57564520	18q12.1	Rattus norvegicus casein kinase 1, alpha 1 (Csnk1a1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC156603	MGC156603
Rattus norvegicus	RefSeq	GI_34858259-S	ILMN_272312	LOC682546	XR_007969.1	XR_007969.1		682546	109467214	XR_007969.1	LOC682546		ILMN_1353697	0003850441	S	56	GGGGAAGACTGGTCCTATAAAGACGGTCGGCTGCGACCTGGGTCTAGTCC					PREDICTED: Rattus norvegicus hypothetical protein LOC682546 (LOC682546), mRNA.					
Rattus norvegicus	RefSeq	GI_62643382	ILMN_294478	LOC365778	NM_001014251.1	NM_001014251.1		365778	62079232	NM_001014251.1	LOC365778	NP_001014273.1	ILMN_1650582	0003990095	S	483	GCGCCCAAATACCAACTGAAGTCAAGAGCAAAGCCGAGGAGGTGGTGTGC	2	-	127829825-127829874	2q26	Rattus norvegicus similar to RIKEN cDNA 1700034I23 (LOC365778), mRNA.				HCBP6	HCBP6
Rattus norvegicus	RefSeq	GI_62639343-S	ILMN_292434	RGD1306714	XM_001075797.1	XM_001075797.1		308492	109461631	XM_001075797.1	RGD1306714	XP_001075797.1	ILMN_1354090	0001780280	S	4082	CAGCTTCTCAGCACCCAGCCCTGAAGACATGAGCACCCTGGGACTCCACA				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein, transcript variant 1 (RGD1306714), mRNA.					
Rattus norvegicus	RefSeq	GI_62655508-S	ILMN_262911	DDX11_PREDICTED	XM_001070646.1	XM_001070646.1		316767	109514209	XM_001070646.1	Ddx11_predicted	XP_001070646.1	ILMN_1359477	0000050592	S	2780	GCCACAAGGACAGAGCCAGAACATCCTGAAGACACCACGTTCCCGGAGAC				9q37	PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) (Ddx11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655502	ILMN_262911	DDX11_PREDICTED	XM_001070646.1	XM_001070646.1		316767	109514209	XM_001070646.1	Ddx11_predicted	XP_001070646.1	ILMN_1650443	0002570609	S	4560	GAGCAGCAGAGCCCAGGGGGTTTAAGAAGTCTATGGATCACTCAAGCAGG				9q37	PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) (Ddx11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663245-S	ILMN_48317	RGD1563581_PREDICTED	XM_225088.3	XM_225088.3		502110	109504575	XM_225088.3	RGD1563581_predicted	XP_225088.3	ILMN_1372044	0006180332	S	25	GGGGCTTATGATGCTTTCATTAGTCCTCTGAAGCTAAGTCTCCGTCTGGC	17	-	5980672-5980721	17p14	PREDICTED: Rattus norvegicus similar to S100 calcium binding protein A11 (calizzarin) (predicted) (RGD1563581_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262166-S	ILMN_288658	ARL1	NM_022385.2	NM_022385.2		64187	54262166	NM_022385.2	Arl1	NP_071780.1	ILMN_1354100	0004730315	S	1458	CAGAGGCAAGAAGACCAAGAATTCAGCTTTGTGGTGAGTCTGAGGCCGGC	7	+	25416654-25416703	7q13	Rattus norvegicus ADP-ribosylation factor-like 1 (Arl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IMP]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles [goid 48193] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC72836	MGC72836
Rattus norvegicus	RefSeq	GI_57114255-S	ILMN_268409	V1RF5	NM_001008941.1	NM_001008941.1		494288	57114255	NM_001008941.1	V1rf5	NP_001008941.1	ILMN_1362597	0005570204	S	888	CTGCCTGCCCTTGAAAAGGAATAGATATTTCCCCAAAGCCTCTAGCCAAG	1	-	59830109-59830158	1q12	Rattus norvegicus vomeronasal 1 receptor, F5 (V1rf5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560132-S	ILMN_290954	TUBA1A	NM_022298.1	NM_022298.1		64158	11560132	NM_022298.1	Tuba1a	NP_071634.1	ILMN_1354206	0006760411	S	1542	TAAGTGTGAATGATTTGTCAGAGACCCGAGCCGTCCACTTCACTGATGGG	7	-	137729430-137729479	7q36	Rattus norvegicus tubulin, alpha 1A (Tuba1a), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence TAS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence TAS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_54635053-S	ILMN_278299	OLR906	NM_001000706.1	NM_001000706.1		404951	54635053	NM_001000706.1	Olr906	NP_001000706.1	ILMN_1361068	0003800446	S	440	GGATGGGAGGGTTTCTGACCATCTTTCCATTGCTCATGTTATTTCTCAAG	7	-	3632421-3632470	7q11	Rattus norvegicus olfactory receptor 906 (Olr906), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr906	Olr906
Rattus norvegicus	RefSeq	GI_48040592-S	ILMN_294237	LCN6	NM_001001519.1	NM_001001519.1		414138	48040592	NM_001001519.1	Lcn6	NP_001001519.1	ILMN_1361630	0001500484	S	482	TGTTCACCAAATGGAGCCAGGGTTTGGGCTTCTTGTCTCAACAGCAGGCC	3	+	3841266-3841315	3p13	Rattus norvegicus lipocalin 6 (Lcn6), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643959-S	ILMN_50782	LOC502542	XM_580254.1	XM_580254.1		502542	62643959	XM_580254.1	LOC502542	XP_580254.1	ILMN_1360514	0001740338	S	1595	CAAGGTTGTGGACATCTCAGTGGCGGGCATGGCTCTGGCTCTGGGCATCT					PREDICTED: Rattus norvegicus LOC502542 (LOC502542), mRNA.					
Rattus norvegicus	RefSeq	GI_62642359-S	ILMN_60597	LOC497743	XM_579435.1	XM_579435.1		497743	62642359	XM_579435.1	LOC497743	XP_579435.1	ILMN_1352738	0002260204	S	3420	ACACGAGAGTCAGATGCGGGACCTTCAGTTGCAGTGTGAAGCCAACGTCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019349 (LOC497743), mRNA.					
Rattus norvegicus	RefSeq	GI_62651446-S	ILMN_64369	LOC503056	XM_578579.1	XM_578579.1		503056	62651446	XM_578579.1	LOC503056	XP_578579.1	ILMN_1373772	0002030601	S	1223	AATGCCAGGAATTCAAGGACCTCCTCCTGGTAGACCTCAGGGCCCTCTCC					PREDICTED: Rattus norvegicus similar to WW domain binding protein 11 (predicted) (LOC503056), mRNA.					
Rattus norvegicus	RefSeq	GI_58865829-A	ILMN_269688	PGK2	NM_001012130.1	NM_001012130.1		316265	58865829	NM_001012130.1	Pgk2	NP_001012130.1	ILMN_1376274	0001580390	S	1403	ACTCGGTATCAAGACCCAGGTAAAGGGCTAGCAGTGAGCCGTATCAGCCC	9	+	16707149-16707198	9q12	Rattus norvegicus phosphoglycerate kinase 2 (Pgk2), mRNA.		The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]	Catalysis of the reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate [goid 4618] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302124-S	ILMN_302019	SS18L1	NM_138918.1	NM_138918.1		192352	20302124	NM_138918.1	Ss18l1	NP_620273.1	ILMN_1355520	0003610138	S	889	GCAGAGCTACGACCGTTCATTTGAGGACCCCACACAGCACTACTATGAGG	3	+	169121466-169121515	3q43	Rattus norvegicus synovial sarcoma translocation gene on chromosome 18-like 1 (Ss18l1), mRNA.		The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	CREST	CREST
Rattus norvegicus	RefSeq	GI_62648474-S	ILMN_48196	LOC502931	XM_578433.1	XM_578433.1		502931	62648474	XM_578433.1	LOC502931	XP_578433.1	ILMN_1352157	0004810369	S	2091	GCTGCGACCCTCGTGGGGGGCTTTCGATCTCCCTGTTTTACAGATGAGGA					PREDICTED: Rattus norvegicus similar to Exocyst complex component Sec15B (LOC502931), mRNA.					
Rattus norvegicus	RefSeq	GI_20514771-S	ILMN_266021	RGD621098	NM_139040.1	NM_139040.1		207123	20514771	NM_139040.1	RGD621098	NP_620609.1	ILMN_1359462	0004760672	S	1918	ACTACATCCACTTTAGTTACTTGATGAGCTGGCTGTGGCTGGTGTGGCCC	19	+	35066248-35066297	19q11	Rattus norvegicus similar to RIKEN cDNA D230025D16Rik (RGD621098), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]	The directed movement of proteins from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane [goid 43001] [evidence IMP]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Lin10; Lin-10	Lin10; Lin-10
Rattus norvegicus	RefSeq	GI_62658406-S	ILMN_48035	LOC501804	XM_577212.1	XM_577212.1		501804	62658406	XM_577212.1	LOC501804	XP_577212.1	ILMN_1370851	0007000239	S	2449	TCCTGACACCACCAATGTGTAGGGAGAGTGTGGAGAAACACGCCCACCCG					PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase A isoform 1 (LOC501804), mRNA.					
Rattus norvegicus	RefSeq	GI_62658446-S	ILMN_268196	RGD1565131_PREDICTED	XM_001071597.1	XM_001071597.1		498143	109496597	XM_001071597.1	RGD1565131_predicted	XP_001071597.1	ILMN_1364695	0006760403	S	615	AGCCTGGGGAAGGCGCAACACTCTTCAGCTCCACCGTTACCGCTAATCCA				12p11	PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (predicted) (RGD1565131_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661682-S	ILMN_55682	LOXL2_PREDICTED	XM_214225.4	XM_214225.4		290350	109501845	XM_214225.4	Loxl2_predicted	XP_214225.4	ILMN_1351352	0006400438	S	1992	GTGCAGGAGCCGCTATGATGGCTACCGCATCTGGATGTACAATTGTCACG	15	+	50068049-50068098	15p11	PREDICTED: Rattus norvegicus lysyl oxidase-like 2 (predicted) (Loxl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647230-S	ILMN_285642	LOC500118	NM_001025771.1	NM_001025771.1		500118	71043915	NM_001025771.1	LOC500118	NP_001020942.1	ILMN_1370333	0002900066	S	559	AAGTGTTCAGGATTCCACAGCTGCTTCACTTGTGCCTGTGGCCAGCCCGC	4	+	77494069-77494118	4q24	Rattus norvegicus similar to RIKEN cDNA D330028D13 (LOC500118), mRNA.				MGC114484	MGC114484
Rattus norvegicus	RefSeq	GI_62643336-S	ILMN_65837	LOC499595	XM_579984.1	XM_579984.1		499595	62643336	XM_579984.1	LOC499595	XP_579984.1	ILMN_1351882	0003440609	S	349	GCTGCACCCATTAGCTCCCAGCAAATAGGAGAGAACATGACTGTTCCAGA					PREDICTED: Rattus norvegicus LOC499595 (LOC499595), mRNA.					
Rattus norvegicus	RefSeq	GI_62655720-S	ILMN_275735	ADCY9_PREDICTED	XM_001077332.1	XM_001077332.1		302950	109489618	XM_001077332.1	Adcy9_predicted	XP_001077332.1	ILMN_1357162	0001990619	S	4385	GGAGGAATACAAGTGCCTTCAGGGTTTGGCCTTGCATCTGGGGCTGAGGC				10q12	PREDICTED: Rattus norvegicus adenylate cyclase 9 (predicted) (Adcy9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11968111-S	ILMN_296635	HIF3A	NM_022528.1	NM_022528.1		64345	11968111	NM_022528.1	Hif3a	NP_071973.1	ILMN_1363798	0000610672	S	1740	TGCTGGAAACGAAGCCCCCCAAGCGGTCCCCAAGACTAGAACCTGGAAGT	1	-	77380615-77380664	1q21	Rattus norvegicus hypoxia inducible factor 3, alpha subunit (Hif3a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	Mop7	Mop7
Rattus norvegicus	RefSeq	GI_47777751-S	ILMN_299241	OLR1029	NM_001001366.1	NM_001001366.1		288850	47777751	NM_001001366.1	Olr1029	NP_001001366.1	ILMN_1374952	0001090575	S	333	TTTACTGGCTGCCATGTCCTATGACAGATATGTGGCCATCTGCAAGCCCC	7	-	7206167-7206216	7q11	Rattus norvegicus olfactory receptor 1029 (Olr1029), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1029	Olr1029
Rattus norvegicus	RefSeq	GI_62664514-S	ILMN_268849	RGD1565118_PREDICTED	XM_001058944.1	XM_001058944.1		307395	109507380	XM_001058944.1	RGD1565118_predicted	XP_001058944.1	ILMN_1354556	0005270484	S	4140	AGAAGGTGTGCGTAACGTTGCCGAAGGCGTGTGCTGCTGGTGCAGACCCA				18q12.1	PREDICTED: Rattus norvegicus similar to mKIAA0843 protein (predicted) (RGD1565118_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649549-S	ILMN_299557	RGD1305604_PREDICTED	XM_001073839.1	XM_001073839.1		362580	109477124	XM_001073839.1	RGD1305604_predicted	XP_001073839.1	ILMN_1361647	0002480369	S	1990	GAGCTGCTTAAGTCGGAGGGAGCAACAGTAATGGCCAAGTCGCCTGAGCC				5q36	PREDICTED: Rattus norvegicus similar to CG2919-PA (predicted) (RGD1305604_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649553-S	ILMN_299557	RGD1305604_PREDICTED	XM_001073839.1	XM_001073839.1		362580	109477124	XM_001073839.1	RGD1305604_predicted	XP_001073839.1	ILMN_1357989	0006020369	S	370	GACCGCCTCCTGAGGGAAGTGGCATGCAGAGCACAGAAACTGGAGGCCTT				5q36	PREDICTED: Rattus norvegicus similar to CG2919-PA (predicted) (RGD1305604_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393980-S	ILMN_267617	PLCD1	NM_017035.1	NM_017035.1		24655	8393980	NM_017035.1	Plcd1	NP_058731.1	ILMN_1371243	0002690452	S	2599	GAACTGCCTTCAGTGCCAACACATCGCTTGAGCTTCTGCCTCTCTGGAGG	8	-	124023207-124023256	8q32	Rattus norvegicus phospholipase C, delta 1 (Plcd1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus [goid 10044] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; Any process that increases the frequency, rate or extent of the regulated release of norepinephrine [goid 10701] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate [goid 32962] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin F stimulus [goid 34696] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence IEP]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with phosphatidylinositol-4,5-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 5546] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Plc1	Plc1
Rattus norvegicus	RefSeq	GI_62638718-S	ILMN_63270	RGD1562677_PREDICTED	XM_344833.3	XM_344833.3		365136	109457826	XM_344833.3	RGD1562677_predicted	XP_344834.3	ILMN_1367477	0004850114	S	1206	AGCCTGCCAGTCCTTGGCACCTTGCAGATGTCATTCTCCCAAGGTCACGT	1	-	51447309-51447358	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1562677_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651665-S	ILMN_290385	OLR991_PREDICTED	XM_576165.1	XM_576165.1		500780	62651665	XM_576165.1	Olr991_predicted	XP_576165.2	ILMN_1359957	0004730280	S	637	GTCCTACGTACATATTGTCAAGACCATTCTAAGATTCCCCTGGGCCAAGC	7	+	6089968-6090017	7q11	PREDICTED: Rattus norvegicus olfactory receptor 991 (predicted) (Olr991_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639442-S	ILMN_55433	LOC502313	XM_577777.1	XM_577777.1		502313	62639442	XM_577777.1	LOC502313	XP_577777.1	ILMN_1357322	0003190731	S	1066	AGTCTGGGGTGCAGGCCTTACTCGTCACCAGAACCTTCATCCTGGGGAAG				1q21	PREDICTED: Rattus norvegicus similar to CDNA sequence BC027344 (LOC502313), mRNA.					
Rattus norvegicus	RefSeq	GI_62662984-S	ILMN_63579	COL4A2_PREDICTED	XM_225043.4	XM_225043.4		306628	109503605	XM_225043.4	Col4a2_predicted	XP_225043.4	ILMN_1375020	0004920451	S	4967	ACGGCCCCACTGCCCATGATGCCCGTAGCTGAGGAGGAAATCAAACCCTA	16	-	82902343-82902392	16q12.5	PREDICTED: Rattus norvegicus procollagen, type IV, alpha 2 (predicted) (Col4a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638977-S	ILMN_53628	RGD1564853_PREDICTED	XM_577748.2	XM_577748.2		502286	109458014	XM_577748.2	RGD1564853_predicted	XP_577748.2	ILMN_1370500	0004480673	S	2351	CCCTGGGATACCTGGGAGCACTGGCCCTAGCGAGCTACTTTATGGCTTTT	1	+	62378762-62378811	1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (predicted) (RGD1564853_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654379-S	ILMN_54106	LOC501062	XM_576478.1	XM_576478.1		501062	62654379	XM_576478.1	LOC501062	XP_576478.1	ILMN_1368284	0000060136	S	2453	TTTGGTTCTTCTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTC					PREDICTED: Rattus norvegicus similar to Leucine rich repeat containing 2 (predicted) (LOC501062), mRNA.					
Rattus norvegicus	RefSeq	GI_62661018-S	ILMN_266360	CHCHD1_PREDICTED	XM_001064763.1	XM_001064763.1		361005	109502131	XM_001064763.1	Chchd1_predicted	XP_001064763.1	ILMN_1374396	0006860670	S	251	TCCAAGGCTCAGGAAGCTGGGAAGATGAGATCAATCCAGGAGACTCTGGG				15p16	PREDICTED: Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain containing 1 (predicted) (Chchd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424277-S	ILMN_292911	NDRG2	NM_133583.1	NM_133583.1		171114	19424277	NM_133583.1	Ndrg2	NP_598267.1	ILMN_1356551	0006200451	S	1846	GGGACTGGGGGAAAGAACTTAGGTCCGACTGCTTGGGGTTTGGCATCAGG	15	-	27338646-27338695	15p14	Rattus norvegicus NDRG family member 2 (Ndrg2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_61557096-S	ILMN_273994	AXL	NM_001013147.1	NM_001013147.1		308444	61557096	NM_001013147.1	Axl	NP_001013165.1	ILMN_1362483	0006900735	S	2348	AGCTCCGGGAAGACTTGGAGAACACATTGAAGGCTCTACCCCCTGCTCAG	1	-	80964993-80965042	1q21	Rattus norvegicus Axl receptor tyrosine kinase (Axl), transcript variant 2, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence NAS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence NAS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence TAS]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence TAS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27676677-S	ILMN_273994	AXL	NM_001013147.1	NM_001013147.1		308444	61557096	NM_001013147.1	Axl	NP_001013165.1	ILMN_2040378	0006940243	S	2311	TGGGAGCTGAACCCTCGAGACCGGCCAAGTTTTGCAGAGCTCCGGGAAGA	1	-	80965030-80965079	1q21	Rattus norvegicus Axl receptor tyrosine kinase (Axl), transcript variant 2, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence NAS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence NAS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence TAS]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence TAS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656616-S	ILMN_59216	TRP53I13_PREDICTED	XM_213407.4	XM_213407.4		287550	109488609	XM_213407.4	Trp53i13_predicted	XP_213407.2	ILMN_1349396	0004590463	S	801	GGTAACTGAAGGCAATGGTAGGTTCAGGACAGAGGCTCAGATGCCCAGTG	10	+	66608959-66609008	10q26	PREDICTED: Rattus norvegicus tumor protein p53 inducible protein 13 (predicted) (Trp53i13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660404-S	ILMN_284649	RGD1311593_PREDICTED	XM_001076917.1	XM_001076917.1		305310	109500555	XM_001076917.1	RGD1311593_predicted	XP_001076917.1	ILMN_1364012	0003450594	S	4722	CACTGTACAGATGCCCAGCTTTGACAGATGATGCATGGTCCTTAGAGCAC				14p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5033405K12 (predicted) (RGD1311593_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923957-S	ILMN_286037	PRDX1	NM_057114.1	NM_057114.1		117254	16923957	NM_057114.1	Prdx1	NP_476455.1	ILMN_1372596	0002690014	S	716	CATGACGTGGTGTGATTCCAGATAAGCCTTTCCTACAAGGGCTAGGGGTG	5	+	136991461-136991510	5q36	Rattus norvegicus peroxiredoxin 1 (Prdx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin [goid 5719] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32872] [evidence ISS]; Any process of regulating the production and elimination of erythrocytes within an organism [goid 34101] [evidence ISS]; The directed killing of a target cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors [goid 42267] [evidence ISS]; Any process that modulates the frequency, rate or extent of the transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane [goid 42345] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IDA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IEA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IDA]	MGC108617; Hbp23	MGC108617; Hbp23
Rattus norvegicus	RefSeq	GI_62640909-S	ILMN_279563	PRCP_PREDICTED	XM_001063114.1	XM_001063114.1		293118	109462429	XM_001063114.1	Prcp_predicted	XP_001063114.1	ILMN_1365752	0002810500	S	1340	AGACCCGTGGTCAGGAGGTGGAGTCACCAAAGACATCACAGACACCCTGG				1q32	PREDICTED: Rattus norvegicus prolylcarboxypeptidase (angiotensinase C) (predicted) (Prcp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641367-I	ILMN_59870	BAG3_PREDICTED	XM_574570.1	XM_574570.1		293524	62641367	XM_574570.1	Bag3_predicted	XP_574570.1	ILMN_1375617	0006130168	S	83	AGCTAGGAGGCTATTTCCAGACACTTCCACCCCTCTTCGGCCACGTCACC				1q36	PREDICTED: Rattus norvegicus Bcl2-associated athanogene 3 (predicted) (Bag3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453375-S	ILMN_281683	SURF1	NM_172068.1	NM_172068.1		64463	25453375	NM_172068.1	Surf1	NP_742065.1	ILMN_1374149	0004590440	S	787	AGCACAACACCCGGAGGGCCCATTGGAGGTCAAACCAGAGTAACCCTTCG	3	-	5810860-5810909	3p12	Rattus norvegicus surfeit 1 (Surf1), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence ISS]	Ab1-205	Ab1-205
Rattus norvegicus	RefSeq	GI_62662753-S	ILMN_273037	TNKS_PREDICTED	XM_001059294.1	XM_001059294.1		290794	109504255	XM_001059294.1	Tnks_predicted	XP_001059294.1	ILMN_1352221	0001230592	S	3975	CCTAGTGATTGCCCCTGGTAAAGGCCAGAGTGATTCAAACCTGCAACTGG				16q12.2	PREDICTED: Rattus norvegicus tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase (predicted) (Tnks_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393667-S	ILMN_268185	UHMK1	NM_017293.1	NM_017293.1		246332	8393667	NM_017293.1	Uhmk1	NP_058989.1	ILMN_1358356	0001190079	S	3142	CCCTGATGTGTGTCTTAGGAAGAAGGCTTTTCCAGGGGTTCATTGGGCGG	13	-	86010915-86010964	13q24	Rattus norvegicus U2AF homology motif (UHM) kinase 1 (Uhmk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm [goid 46825] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence NAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IC ]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Kist; KIS; MGC112620	Kist; KIS; MGC112620
Rattus norvegicus	RefSeq	GI_62658161-S	ILMN_290265	RGD1564491_PREDICTED	XM_001059363.1	XM_001059363.1		303812	109494676	XM_001059363.1	RGD1564491_predicted	XP_001059363.1	ILMN_1367514	0003140093	S	3717	TGATCTGACTGCTCTTAAGGCCGCTGCCCGGGGGCTCTTTCTGTTACTGC				11q23	PREDICTED: Rattus norvegicus RGD1564491 (predicted) (RGD1564491_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665943-S	ILMN_50659	LRRTM3_PREDICTED	XM_228137.4	XM_228137.4		294380	109509390	XM_228137.4	Lrrtm3_predicted	XP_228137.4	ILMN_1353367	0005340088	S	1502	CGCTCCCTCATGCGAAGGCACCGGAAGAAGAAACGGCAATCGCTCAAGCA	20	-	26516548-26516597	20p11	PREDICTED: Rattus norvegicus leucine rich repeat transmembrane neuronal 3 (predicted) (Lrrtm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465578-S	ILMN_270376	PDLIM7	NM_173125.1	NM_173125.1		286908	27465578	NM_173125.1	Pdlim7	NP_775148.1	ILMN_1369190	0004590112	S	1635	CAGGTGCTAGCCTCCTAGCCCCAGTTCACTCTGGTGTCACAATAAACCTG	17	+	15183923-15183972	17p14	Rattus norvegicus PDZ and LIM domain 7 (Pdlim7), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Enigma	Enigma
Rattus norvegicus	RefSeq	GI_62652577-S	ILMN_52978	RGD1559695_PREDICTED	XM_576290.2	XM_576290.2		500889	109480873	XM_576290.2	RGD1559695_predicted	XP_576290.2	ILMN_1355298	0001990092	S	3768	CTGGGCAGCTCTTTTTATAGGGTACACCACCTGCTACCAACCCCAGGCCG	7	-	111470379-111470409:111470537-111470555	7q34	PREDICTED: Rattus norvegicus similar to FLJ43860 protein (predicted) (RGD1559695_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652579-S	ILMN_52978	RGD1559695_PREDICTED	XM_576290.2	XM_576290.2		500889	109480873	XM_576290.2	RGD1559695_predicted	XP_576290.2	ILMN_1366205	0000540059	S	1436	TCTGTGCGCTGAGGCCACCCATAGATGTGGAAAGGAAGTCCCGCCTCCTC	7	-	111498109-111498155:111499366-111499368	7q34	PREDICTED: Rattus norvegicus similar to FLJ43860 protein (predicted) (RGD1559695_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012435-S	ILMN_268872	KRT10	NM_001008804.1	NM_001008804.1		450225	57012435	NM_001008804.1	Krt10	NP_001008804.1	ILMN_1366570	0005290324	S	1233	CGCCCTGGAGGAACAACTGCAACAGATTCGGGCTGAAACCGAGTGCCAGA	10	-	88289677-88289726	10q32.1	Rattus norvegicus keratin 10 (Krt10), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence ISS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ka10	Ka10
Rattus norvegicus	RefSeq	GI_62651020-S	ILMN_282497	RGD1565985_PREDICTED	XM_001054586.1	XM_001054586.1		500689	109479604	XM_001054586.1	RGD1565985_predicted	XP_001054586.1	ILMN_1369250	0003130168	S	2150	GGTCGCCCACCATAGTGCAATACAGGACAGAGTCCCAGCCTTCACGAAGA				6q24	PREDICTED: Rattus norvegicus similar to mKIAA0227 protein (predicted) (RGD1565985_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652013-S	ILMN_48112	NEDD1_PREDICTED	XM_216878.4	XM_216878.4		299730	109480462	XM_216878.4	Nedd1_predicted	XP_216878.4	ILMN_1369616	0005340451	S	3170	CTCCAAAAGTGGATCAGGAGCAGGACTTTTCCCAAGCTTCTCAGAAAGTC	7	-	29704518-29704567	7q13	PREDICTED: Rattus norvegicus neural precursor cell expressed, developmentally down-regulated gene 1 (predicted) (Nedd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665773-S	ILMN_292291	RNF8	NM_001025727.1	NM_001025727.1		361815	71043655	NM_001025727.1	Rnf8	NP_001020898.1	ILMN_1375115	0000130551	S	1367	GCATCAGTGAGTGGATGAAGCGGAAAGTGGAGTGTCCCATCTGTCGGAAG	20	+	7948779-7948828	20p12	Rattus norvegicus ring finger protein 8 (Rnf8), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC116114	MGC116114
Rattus norvegicus	RefSeq	GI_62664442-S	ILMN_51480	MEGF10	XM_238019.3	XM_238019.3		291445	62664442	XM_238019.3	Megf10	XP_238019.3	ILMN_1372633	0006770537	S	3819	GATCTGCGTGTGCAGCTTCCGCGCAGGCGCTGACTTGGAGCAGGTGAGCG				18q12.1	PREDICTED: Rattus norvegicus Megf10 protein (Megf10), mRNA.		The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence NAS]			
Rattus norvegicus	RefSeq	GI_62649983	ILMN_57673	LOC313672	XM_233616.3	XM_233616.3		313672	62649983	XM_233616.3	LOC313672	XP_233616.3	ILMN_1650569	0001410286	S	839	CAGAGGAGATGAGCACCGTCTTCCATCCAGCCAACTCCACAGGCATCCGA				5q36	PREDICTED: Rattus norvegicus similar to CG11206-PA (LOC313672), mRNA.					
Rattus norvegicus	RefSeq	GI_20806136-S	ILMN_265250	DDX46	NM_139098.1	NM_139098.1		245957	20806136	NM_139098.1	Ddx46	NP_620798.1	ILMN_1374807	0000630156	S	3143	GGCTGTGCAGAAAGCAAAGGCAGAGATCACCAGGCTCATAAAAGAGGAGC	17	-	14987005-14987054	17p14	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 (Ddx46), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650600-A	ILMN_294705	AHR	NM_013149.1	NM_013149.1		25690	6978474	NM_013149.1	Ahr	NP_037281.1	ILMN_1376339	0004780053	S	3483	GGCTGTGCCCATTAGCCTGCAGTGAAGGGAGGTGGCGCTTGTTAAGCTAG	6	-	54204173-54204222	6q16	Rattus norvegicus aryl hydrocarbon receptor (Ahr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 7812217] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcriptional preinitiation complex assembly [goid 45899] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [pmid 7812217] [evidence IDA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [pmid 7812217] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [pmid 12213388] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [pmid 9658193] [evidence IDA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [pmid 12213388] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms [goid 9410] [pmid 9658193] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Combining with an aryl hydrocarbon to initiate a change in cell activity [goid 4874] [evidence TAS]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence IEA]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [pmid 7812217] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11259609] [evidence IPI]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577546	ILMN_288598	OLR50	NM_001000131.1	NM_001000131.1		293210	47577546	NM_001000131.1	Olr50	NP_001000131.1	ILMN_1650375	0001050524	S	870	CCCTATTGTCTACGGAGTCAGAACCAAACAGATCCGGGACAGGGTTATCC	1	+	160504740-160504789	1q32	Rattus norvegicus olfactory receptor 50 (Olr50), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr50	Olr50
Rattus norvegicus	RefSeq	GI_47576846-S	ILMN_302239	OLR819	NM_001000843.1	NM_001000843.1		405132	47576846	NM_001000843.1	Olr819	NP_001000843.1	ILMN_1367230	0004200195	S	114	GTTGGGGAATGGGTTTACCCTTGGATTAATCTGCGTAGAGCCCAGGCTAC	4	+	70954920-70954969	4q23	Rattus norvegicus olfactory receptor 819 (Olr819), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr819	Olr819
Rattus norvegicus	RefSeq	GI_62666178-S	ILMN_61916	LOC502439	XM_577920.1	XM_577920.1		502439	62666178	XM_577920.1	LOC502439	XP_577920.1	ILMN_1351906	0006860324	S	0	ATGACCTTGATTCGAGGATCTGGAAGCAGCTGTGTGCTGCGGGAATCCCG					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502439), mRNA.					
Rattus norvegicus	RefSeq	GI_62640782-S	ILMN_53984	RGD1564385_PREDICTED	XM_341876.3	XM_341876.3		361597	109458972	XM_341876.3	RGD1564385_predicted	XP_341877.3	ILMN_1373004	0003710156	S	1700	CTCCCAGCAGCCCCTTACAAAGAAGAGTGGTGTTGTCTTGTTCAGGGCGG	1	-	136203402-136203451	1q31	PREDICTED: Rattus norvegicus similar to tyrosine kinase Fps/Fes (predicted) (RGD1564385_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591885-S	ILMN_289509	MAP1A	NM_030995.1	NM_030995.1		25152	13591885	NM_030995.1	Map1a	NP_112257.1	ILMN_1353439	0006370301	S	9719	TCTTGGATAGAGTTTCTGGGAGGTGGAGGCTGGACTAGAGACCTGGGGAG	3	+	108110669-108110718	3q35	Rattus norvegicus microtubule-associated protein 1A (Map1a), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IDA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Map1a	Map1a
Rattus norvegicus	RefSeq	GI_62664025-S	ILMN_52053	LOC498817	XM_574099.1	XM_574099.1		498817	62664025	XM_574099.1	LOC498817	XP_574099.1	ILMN_1364735	0003990619	S	870	GTAATGGGGGGAGGATGGAGAGACAAGCTCCAGTCAGAGACCACAAGACC					PREDICTED: Rattus norvegicus similar to LRRGT00034 (LOC498817), mRNA.					
Rattus norvegicus	RefSeq	GI_62663630-S	ILMN_60022	TCRG	XM_341534.2	XM_341534.2		24821	62663630	XM_341534.2	Tcrg	XP_341535.2	ILMN_1355042	0005670600	S	1496	CCCACGGCATTTGTTGCTCTTGAACCAGTCAACTCTCTGAAAGCCTCCGC				17q11	PREDICTED: Rattus norvegicus T-cell receptor gamma chain (Tcrg), mRNA.	A T cell receptor complex in which the TCR heterodimer comprises gamma and delta chains, associated with the CD3 complex; recognizes antigen directly, without a requirement for processing and presentation by an MHC protein [goid 42106] [evidence TAS]				
Rattus norvegicus	RefSeq	GI_62653457-S	ILMN_53935	LOC363036	XM_347097.2	XM_347097.2		363036	62653457	XM_347097.2	LOC363036	XP_347098.2	ILMN_1365060	0004120131	S	717	CACACTCATCCTGGGCTGAAACCAACTACATCCCAGAAGCCCCCAGGTGC					PREDICTED: Rattus norvegicus hypothetical LOC363036 (LOC363036), mRNA.					
Rattus norvegicus	RefSeq	Rn.3504	ILMN_265120	RGC32	XM_001072931.1	XM_001072931.1		117183	109502756	XM_001072931.1	Rgc32	XP_001072931.1	ILMN_1530263	0000670138	S	769	ATGATCTATCTAATGTGTTTTTACTCCTTAAACATAGCTCTTCTATAAAT					PREDICTED: Rattus norvegicus response gene to complement 32 (Rgc32), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666392-S	ILMN_50140	LOC365611	XM_345129.2	XM_345129.2		365611	62666392	XM_345129.2	LOC365611	XP_345130.2	ILMN_1355691	0001230603	S	932	CTCCATGGCTGGAATTGAAAACACTCAGGCAAGCCCCGCTAATCGGCAGC					PREDICTED: Rattus norvegicus similar to osteopetrosis associated transmembrane protein 1 (LOC365611), mRNA.					
Rattus norvegicus	RefSeq	GI_34879824-S	ILMN_262428	RGD1560105_PREDICTED	XR_007638.1	XR_007638.1		367761	109512439	XR_007638.1	RGD1560105_predicted		ILMN_2040605	0000240739	S	460	TGGACAGGTGGCAGCTGCCAACAAGAAGCATTAGGACAAAGGATTCTGGG				Xq14	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (predicted) (RGD1560105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661105-S	ILMN_59311	LOC498448	XM_573707.1	XM_573707.1		498448	62661105	XM_573707.1	LOC498448	XP_573707.1	ILMN_1367647	0003190239	S	54	AGGGCTGAGCGTCTGAGGAGCCATTTTGAACAACGGGGAACACTCCCTGG					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP) (LOC498448), mRNA.					
Rattus norvegicus	RefSeq	GI_62649581-S	ILMN_59536	RLF_PREDICTED	XM_233485.4	XM_233485.4		313566	109475436	XM_233485.4	Rlf_predicted	XP_233485.4	ILMN_1371856	0001400167	S	5380	CAGACTGTGGGGAGCTTGCCTTAAAACAGCTTCATTATCTTCGGCCCGTG	5	-	141732129-141732178	5q36	PREDICTED: Rattus norvegicus rearranged L-myc fusion sequence (predicted) (Rlf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648084-S	ILMN_51439	LOC312667	XM_232319.3	XM_232319.3		312667	62648084	XM_232319.3	LOC312667	XP_232319.3	ILMN_1370590	0001340204	S	6452	GCCCATTCAGACTGATGGGTCCCAGTTACTGACAGTTCATAGACTCCTTC				4q42	PREDICTED: Rattus norvegicus similar to KIAA1074 protein (predicted) (LOC312667), mRNA.					
Rattus norvegicus	RefSeq	GI_62653287-S	ILMN_68213	LOC367033	XM_345906.2	XM_345906.2		367033	62653287	XM_345906.2	LOC367033	XP_345907.2	ILMN_1368707	0001780066	S	2704	TTCTGGCGCCAAGCGCCCGTCAGCACGTGTGCACAGACTCGAAACGCTTT				8q13	PREDICTED: Rattus norvegicus similar to zinc finger protein 560 (LOC367033), mRNA.					
Rattus norvegicus	RefSeq	GI_62640706-S	ILMN_50422	LOC308742	XM_218795.3	XM_218795.3		308742	62640706	XM_218795.3	LOC308742	XP_218795.3	ILMN_1361320	0006590021	S	3588	CGCCACAGATGGGGATGCCTTGATTACACAGGAAGGCTGCGACTGCACAG				1q31	PREDICTED: Rattus norvegicus similar to multiple C2-domains with two transmembrane regions 2 (LOC308742), mRNA.					
Rattus norvegicus	RefSeq	GI_62646351-S	ILMN_274888	RGD1564945_PREDICTED	XM_001071893.1	XM_001071893.1		366248	109471307	XM_001071893.1	RGD1564945_predicted	XP_001071893.1	ILMN_1368663	0005270162	S	378	ACCAAAGAGAAAGGCACCTGAGTTCAGCTGAAGCGACAGCCTGCACCACC				3q42	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053330 (predicted) (RGD1564945_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640882-S	ILMN_59090	ME3_PREDICTED	XM_341880.2	XM_341880.2		361602	62640882	XM_341880.2	Me3_predicted	XP_341881.2	ILMN_1363232	0003290450	S	1619	GGTCCTCGACTATGCGTACAAACACAACCTGGCCTCCTACTATCCAGAGC				1q32	PREDICTED: Rattus norvegicus malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) (Me3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012375-S	ILMN_291026	KB23	NM_001008813.1	NM_001008813.1		407759	57012375	NM_001008813.1	Kb23	NP_001008813.1	ILMN_1350173	0001740731	S	1526	CCCTGTCACCAGGGGAGGTGTTAGGAGTCAAGAGGGAGCCAAGCAGCCTG	7	-	140235383-140235432	7q36	Rattus norvegicus type II keratin Kb23 (Kb23), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]	Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_48976082-S	ILMN_282327	AP3M1	NM_133593.2	NM_133593.2		171126	48976082	NM_133593.2	Ap3m1	NP_598277.2	ILMN_1359257	0005360301	S	2835	ACCATACCTAGAACGCACAGCTTCCTTGCTGTGCAGTCCTCTTGTCTGTC	15	+	3476959-3477008	15p16	Rattus norvegicus adaptor-related protein complex 3, mu 1 subunit (Ap3m1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	P47a	P47a
Rattus norvegicus	RefSeq	GI_62648091-S	ILMN_51814	WNT5B	XM_342747.3	XM_342747.3		282582	109472551	XM_342747.3	Wnt5b	XP_342748.3	ILMN_1371877	0005670204	S	1549	TCCGGGAGAAAGGTGGGGAGGAGATGAAGGGGATGGGCTTGTTTCAGATC	4	-	155748171-155748220	4q42	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 5B (Wnt5b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62717964-S	ILMN_269795	LOC501266	XR_009551.1	XR_009551.1		501266	109514877	XR_009551.1	LOC501266		ILMN_1363290	0001410035	S	2071	CCGAAACACTTTTGGCGTGCATAACGATCACTATGTACACATTGGCCAAG					PREDICTED: Rattus norvegicus similar to serine/threonine protein kinase 24 (LOC501266), mRNA.					
Rattus norvegicus	RefSeq	GI_62717972-S	ILMN_269795	LOC501266	XR_009551.1	XR_009551.1		501266	109514877	XR_009551.1	LOC501266		ILMN_1348928	0004050164	S	119	AGCCTAGGAGAAACAGCCGCAATCAGGAGACATTCCCGCGGTCCCCGCTG					PREDICTED: Rattus norvegicus similar to serine/threonine protein kinase 24 (LOC501266), mRNA.					
Rattus norvegicus	RefSeq	GI_13928899-S	ILMN_283317	SLCO1B2	NM_031650.1	NM_031650.1		58978	13928899	NM_031650.1	Slco1b2	NP_113838.1	ILMN_1361516	0006980091	S	2510	GCTTCTGTGATAGGTGACTTCATGATGTGGCATATTCTGGTATCCCCGGT	4	+	179117972-179118021	4q44	Rattus norvegicus solute carrier organic anion transporter family, member 1b2 (Slco1b2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence TAS]; Catalysis of the transfer of bile acid from one side of the membrane to the other. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 15125] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Oatp4; rlst-1; Slc21a10	Oatp4; rlst-1; Slc21a10
Rattus norvegicus	RefSeq	GI_62645121	ILMN_289349	ARL6IP6	NM_001024310.1	NM_001024310.1		499798	66730301	NM_001024310.1	Arl6ip6	NP_001019481.1	ILMN_1650492	0001240647	S	1037	GCAAGACCTTAAAGCCCAGCATTTTGGAGAGAGAAGCAGGTTCTGTGGGT	3	+	34747659-34747708	3q12	Rattus norvegicus ADP-ribosylation-like factor 6 interacting protein 6 (Arl6ip6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13994176-S	ILMN_284787	SNAP91	NM_031728.1	NM_031728.1		65178	13994176	NM_031728.1	Snap91	NP_113916.1	ILMN_1370967	0003390128	S	3077	TGCCTTTAGTGCTTTTCTGGACGTTGCCCGTGGACGGAGGATGACGCAGC	8	-	92033684-92033733	8q31	Rattus norvegicus synaptosomal-associated protein 91 (Snap91), mRNA.	A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes [goid 30118] [evidence IEA]	The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IEA]	Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [evidence IEA]; Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IEA]	Ap180	Ap180
Rattus norvegicus	RefSeq	GI_47576696-S	ILMN_286971	OLR170	NM_001000175.1	NM_001000175.1		293316	47576696	NM_001000175.1	Olr170	NP_001000175.1	ILMN_1349969	0005690082	S	599	ACGGTTTAATGGTTGCCCTCCTGATTGGGGGCTTTGACATCCTGTGCATC	1	-	162510468-162510517	1q33	Rattus norvegicus olfactory receptor 170 (Olr170), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr170; ratchr1-162606593-162605628_ORF	Olr170; ratchr1-162606593-162605628_ORF
Rattus norvegicus	RefSeq	GI_62656109-S	ILMN_48882	IGTP	XM_220451.4	XM_220451.4		303163	109488130	XM_220451.4	Igtp	XP_220451.4	ILMN_1349575	0001990181	S	4858	CAGAAGGGTTCTTGGTGCCCTACACTACCCTCGATGATGTCAGTGGTACC	10	+	43852982-43853031	10q22	PREDICTED: Rattus norvegicus interferon gamma induced GTPase (Igtp), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]		Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865909-A	ILMN_283593	ZFP143	NM_001012169.1	NM_001012169.1		361627	58865909	NM_001012169.1	Zfp143	NP_001012169.1	ILMN_1376551	0006980563	S	2837	GAGTTTCCCACGGGTCTGGCCTAGGCTTATAGTTCTATGGCTGAGAATGG	1	+	167739895-167739944	1q33	Rattus norvegicus zinc finger protein 143 (Zfp143), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663050	ILMN_274492	LOC364654	XM_001061874.1	XM_001061874.1		364654	109504273	XM_001061874.1	LOC364654	XP_001061874.1	ILMN_1650595	0006760450	S	849	AGTATCCCCTCTGGACTTTGTTCCTGAAGCCCTGTTTGGAGTTCTGGGCT					PREDICTED: Rattus norvegicus similar to ring finger protein 170 (LOC364654), mRNA.					
Rattus norvegicus	RefSeq	GI_13591879-S	ILMN_279084	PLP1	NM_030990.1	NM_030990.1		24943	13591879	NM_030990.1	Plp1	NP_112252.1	ILMN_1358627	0004480528	S	2703	CTAGCAGGATGCACAGTAGTGAGGAGAGCTTAAAGGACCTGGAAGAAACC	X	+	124503325-124503374	Xq35	Rattus norvegicus proteolipid protein 1 (Plp1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence ISS]; The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs [goid 43218] [evidence IMP]	Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IPI]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence IEP]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IMP]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of oligodendrocytes in the central nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22010] [evidence IEA]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of oligodendrocytes in the central nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22010] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IMP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The chemical reactions and pathways resulting in the formation of long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 42759] [evidence IEA]; The chemical reactions and pathways resulting in the formation of long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 42759] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence IMP]	Plp1	Plp1
Rattus norvegicus	RefSeq	GI_13929177-S	ILMN_300910	FBN1	NM_031825.1	NM_031825.1		83727	13929177	NM_031825.1	Fbn1	NP_114013.1	ILMN_1359541	0000450167	S	8847	TGATTCCTGAGAACTGGGACATGAGTATCGGCGGAAGTGGGCCGTGCGTG	3	-	112608525-112608574	3q36	Rattus norvegicus fibrillin 1 (Fbn1), mRNA.	Extracellular matrix components occurring independently or along with elastin. Thought to have force-bearing functions in tendon. In addition to fibrillins, microfibrils may contain other associated proteins [goid 1527] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IMP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IMP]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34873022-S	ILMN_66962	RGD1308923_PREDICTED	XM_342994.2	XM_342994.2		362678	109475909	XM_342994.2	RGD1308923_predicted	XP_342995.1	ILMN_1360281	0006520438	S	652	TCTCTGGGACACCTGAGGGCTGGCTCCTTCTGGTTTTGTTCCTGGGCACA	5	+	172057408-172057457	5q36	PREDICTED: Rattus norvegicus LOC362678 (predicted) (RGD1308923_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662712-S	ILMN_265749	RGD1562077_PREDICTED	XR_008283.1	XR_008283.1		361158	109504248	XR_008283.1	RGD1562077_predicted		ILMN_1363114	0000130193	S	535	GCACCACCAACTACTTACCCCCACTAGCCCCCAGGTCAAGGTCATCCATG				16q12.1	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1562077_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650849-S	ILMN_57675	LOC503023	XM_578541.1	XM_578541.1		503023	62650849	XM_578541.1	LOC503023	XP_578541.1	ILMN_1356497	0002760132	S	222	TCTGTGGTCCGAGGAGAGCAGGGCAGCAAAGAATGCCTCCAGACTGTGGT					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC503023), mRNA.					
Rattus norvegicus	RefSeq	GI_62666524-S	ILMN_57885	LOC501518	XM_576919.1	XM_576919.1		501518	62666524	XM_576919.1	LOC501518	XP_576919.1	ILMN_1363840	0001450154	S	214	GCCATAATGACACTTGGTGGCAGGTTGAGTGGCTGGATGGCAAGCATATG					PREDICTED: Rattus norvegicus similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (SP18) (LOC501518), mRNA.					
Rattus norvegicus	RefSeq	GI_62649181-S	ILMN_264896	IFNA11_PREDICTED	XM_001054353.1	XM_001054353.1		298211	109476722	XM_001054353.1	Ifna11_predicted	XP_001054353.1	ILMN_1354895	0006840204	S	36	CGTGATGAGCTATTGTAGATCAACCTGCTGTCTAGGATGTGACCTGCCTC				5q32	PREDICTED: Rattus norvegicus interferon alpha family, gene 11 (predicted) (Ifna11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718285-S	ILMN_263388	LOC685285	XM_001057196.1	XM_001057196.1		685285	109513207	XM_001057196.1	LOC685285	XP_001057196.1	ILMN_1356723	0001170053	S	1448	CCTTCTCTAGGTAAGTCCTGGTCAGAAAGCCTATCACCTGTGGAATGGCC	Un|NW_047874.1	-	547358-547394:547395-547407		PREDICTED: Rattus norvegicus hypothetical protein LOC685285 (LOC685285), mRNA.					
Rattus norvegicus	RefSeq	GI_62644243-S	ILMN_66212	SASS6_PREDICTED	XM_227619.4	XM_227619.4		310807	109465492	XM_227619.4	Sass6_predicted	XP_227619.3	ILMN_1367500	0000870576	S	1721	AACACCAGCCATCCAGTCTCTGGACCAAAGGTGCAGTTCAGCTTGCAGCT	2	+	212849657-212849686:212853879-212853898	2q41	PREDICTED: Rattus norvegicus spindle assembly 6 homolog (C. elegans) (predicted) (Sass6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654824-S	ILMN_278498	RGD1304653_PREDICTED	XM_343551.2	XM_343551.2		363213	62654824	XM_343551.2	RGD1304653_predicted	XP_343552.1	ILMN_1352334	0002450300	S	1394	GATGGCTGTGCTGATGTCAAGCGGGGATCTTTCACCTGCAGTCACAACAG	9	-	33174913-33174962	9q21	PREDICTED: Rattus norvegicus similar to 2310061I09Rik protein (predicted) (RGD1304653_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665054-S	ILMN_52057	LOC304646	XM_222484.3	XM_222484.3		304646	62665054	XM_222484.3	LOC304646	XP_222484.3	ILMN_1352253	0000940128	S	5562	GCTGGGATGACAAGCAGGCGAAGCCGTGCGAACATCACTGCACATTCCTG				19q11	PREDICTED: Rattus norvegicus similar to calmegin (predicted) (LOC304646), mRNA.					
Rattus norvegicus	RefSeq	GI_62666111-S	ILMN_58794	LOC365584	XM_345111.2	XM_345111.2		365584	62666111	XM_345111.2	LOC365584	XP_345112.2	ILMN_1372315	0004210731	S	1998	GAGGATGTGGCAACCGGAAGTCTCAGTGGCAAGGATGAGGCAGCACCGCT					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC365584), mRNA.					
Rattus norvegicus	RefSeq	GI_62652444-S	ILMN_69599	LOC500872	XM_576271.1	XM_576271.1		500872	62652444	XM_576271.1	LOC500872	XP_576271.1	ILMN_1358899	0001340047	S	2783	TCCTTTTTGTAACTAATCCTTTTTACTGGTAAACATTGTAAATTAAAATG					PREDICTED: Rattus norvegicus similar to Der1-like domain family, member 1 (LOC500872), mRNA.					
Rattus norvegicus	RefSeq	GI_62660373-S	ILMN_283181	RGD1559712_PREDICTED	XM_001076368.1	XM_001076368.1		498352	109500540	XM_001076368.1	RGD1559712_predicted	XP_001076368.1	ILMN_1374108	0002760152	S	801	TCTATGACAGTGACAGCTCTGGCAGTGATGCTGAGGCCAAGTAGAGCTGG				14p11	PREDICTED: Rattus norvegicus similar to phosducin-like 2 (predicted) (RGD1559712_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665517-S	ILMN_266374	RGD1559841_PREDICTED	XR_009077.1	XR_009077.1		307816	109508830	XR_009077.1	RGD1559841_predicted		ILMN_1367607	0000580619	S	1987	CAGGAGCGGAAGCTGTTGGTCTTGCAGTTGCTGGCCGTTCTGTGTGAGAA				19q12	PREDICTED: Rattus norvegicus similar to expressed sequence AW413431 (predicted) (RGD1559841_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665205-S	ILMN_266374	RGD1559841_PREDICTED	XR_009077.1	XR_009077.1		307816	109508830	XR_009077.1	RGD1559841_predicted		ILMN_1357995	0005890347	S	2948	AAGACCCAGATGGTGCACACAGGGCCAGCAGTTTATCCAACCTGGGGGAG				19q12	PREDICTED: Rattus norvegicus similar to expressed sequence AW413431 (predicted) (RGD1559841_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661750-S	ILMN_59396	LOC498548	XM_573822.1	XM_573822.1		498548	62661750	XM_573822.1	LOC498548	XP_573822.1	ILMN_1358292	0005220408	S	365	CAGTTCACGTTGGTCCAGTGATTTTGAAGGAACGTCTGGGGTGGGCTGCC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC498548), mRNA.					
Rattus norvegicus	RefSeq	GI_62641079-S	ILMN_266553	LOC690093	XR_006791.1	XR_006791.1		690093	109459188	XR_006791.1	LOC690093		ILMN_1373797	0001850048	S	861	AGCACTGTCTGGGCATTGTTGGTGCTGAGGTGGCCCTAGAAGAGACCCCG	1	+	163381017-163381066	1q33	PREDICTED: Rattus norvegicus hypothetical protein LOC690093 (LOC690093), mRNA.					
Rattus norvegicus	RefSeq	GI_62659144-S	ILMN_48727	RGD1307235_PREDICTED	XM_219401.4	XM_219401.4		309053	109497727	XM_219401.4	RGD1307235_predicted	XP_219401.3	ILMN_1370808	0005290068	S	5050	CACAGTGACACAGAGTGCTGCCTATGGAATGGGGTGACTGGCTTAAGGGG	13	+	11929837-11929886	13p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310035C23 (predicted) (RGD1307235_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663892-S	ILMN_56064	LOC498795	XM_574081.1	XM_574081.1		498795	62663892	XM_574081.1	LOC498795	XP_574081.1	ILMN_1357800	0002260609	S	892	CCTGAGCGGCTTCCGGTTCATCCCGTCTGAGGATGGCTCTCCCAATCTAA				17q12.3	PREDICTED: Rattus norvegicus similar to Coiled-coil domain containing protein 3 precursor (LOC498795), mRNA.					
Rattus norvegicus	RefSeq	GI_62654014	ILMN_298053	PLOD2	NM_175869.2	NM_175869.2		300901	31343608	NM_175869.2	Plod2	NP_787065.1	ILMN_1650259	0002120717	S	3420	CCTTTGGCCGTAGTTGGTAGTTGGTCTCTTTGTTTTTCCTGGAGGAGGGG	8	+	97622900-97622949	8q31	Rattus norvegicus procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 (Plod2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2 [goid 8475] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666270-S	ILMN_66370	LOC309854	XM_228300.3	XM_228300.3		309854	62666270	XM_228300.3	LOC309854	XP_228300.3	ILMN_1374667	0005900315	S	712	GATCTGTGAAGAAGGAGTGGTCTGCTGTAGGGAGCTGGCGAAGTCTGGGG				20q12	PREDICTED: Rattus norvegicus similar to chromosome 6 open reading frame 199 (LOC309854), mRNA.					
Rattus norvegicus	RefSeq	GI_62645807-S	ILMN_53639	USP8_PREDICTED	XM_215821.4	XM_215821.4		296121	109468758	XM_215821.4	Usp8_predicted	XP_215821.4	ILMN_1356049	0001400731	S	3290	TCGATGGAGGCCACTACACGGCCTATTGTAAAAACGCGGCGAGGCAGCGC	3	+	114283709-114283758	3q36	PREDICTED: Rattus norvegicus ubiquitin specific protease 8 (predicted) (Usp8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639001-S	ILMN_286922	ZIM1_PREDICTED	XM_001068350.1	XM_001068350.1		308322	109461087	XM_001068350.1	Zim1_predicted	XP_001068350.1	ILMN_1353168	0005360593	S	1438	CTCAAGCACCAGAAGAGACACGAGGCGAACTCCAGGTATCGGTGCAAGGG					PREDICTED: Rattus norvegicus zinc finger, imprinted 1 (predicted) (Zim1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654110-S	ILMN_293928	RGD1561794_PREDICTED	XM_001064671.1	XM_001064671.1		367132	109485099	XM_001064671.1	RGD1561794_predicted	XP_001064671.1	ILMN_1367179	0006860088	S	193	TCAGTAGGACTGCAGGGACGGCAGAAGCGCGCCCAGATTAGCCTAGAACA				8q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930563A03 gene (predicted) (RGD1561794_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575938-S	ILMN_276026	OLR1488	NM_001000719.1	NM_001000719.1		404971	47575938	NM_001000719.1	Olr1488	NP_001000719.1	ILMN_1359075	0001090019	S	686	CAACTACACGGGGCATACACAAGGTCTTTTCCACCTGTGGCTCCCACCTT	10	+	60777573-60777622	10q24	Rattus norvegicus olfactory receptor 1488 (Olr1488), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1488	Olr1488
Rattus norvegicus	RefSeq	GI_62652658-S	ILMN_265695	SLC39A4_PREDICTED	XM_001075258.1	XM_001075258.1		300051	109482491	XM_001075258.1	Slc39a4_predicted	XP_001075258.1	ILMN_1363448	0007100300	S	2009	TGGCTTCTTTTCCTGCTCCACAACGTGGGTCTGCTGGGCGGCTGGACCAT				7q34	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 4 (predicted) (Slc39a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653338-S	ILMN_273161	PRKCSH_PREDICTED	XM_001077601.1	XM_001077601.1		300445	109484381	XM_001077601.1	Prkcsh_predicted	XP_001077601.1	ILMN_1349029	0005360450	S	1373	ACCGGCTTTGCCCCTTCAAACTTGTCTCCCAGAAACCCAAACATGGGGGC				8q13	PREDICTED: Rattus norvegicus protein kinase C substrate 80K-H (predicted) (Prkcsh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980993-S	ILMN_273340	GUCA2A	NM_013118.1	NM_013118.1		25656	6980993	NM_013118.1	Guca2a	NP_037250.1	ILMN_1350098	0002940593	S	225	ATCTGCATTTCCAGAAGCACTGAGGCCCCTCTGCGAGAAACCCAACGCCG	5	+	140228305-140228354	5q36	Rattus norvegicus guanylate cyclase activator 2a (guanylin) (Guca2a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Increases the activity of an enzyme [goid 8047] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Modulates the activity of guanylate cyclase [goid 30249] [evidence NAS]; Increases the activity of guanylate cyclase [goid 30250] [evidence IDA]	Guca2; GUANYL; Guanylin	Guca2; GUANYL; Guanylin
Rattus norvegicus	RefSeq	GI_62662843-S	ILMN_301493	TM2D2	NM_001017444.1	NM_001017444.1		290833	62945243	NM_001017444.1	Tm2d2	NP_001017444.1	ILMN_1354256	0004070706	S	1011	GTTTCTGTGTGGCTGGATTTCAGTCGTTTGGAGCAGGGGGACCCAGTAGG	16	-	71440662-71440711	16q12.4	Rattus norvegicus TM2 domain containing 2 (Tm2d2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1306769; 2410018g23rik	RGD1306769; 2410018g23rik
Rattus norvegicus	RefSeq	GI_62648011-S	ILMN_48103	RAD18_PREDICTED	XM_342734.3	XM_342734.3		362412	109472458	XM_342734.3	Rad18_predicted	XP_342735.3	ILMN_1350574	0002900692	S	1270	CAGTAACAAAGCACTTTCCTCAGTCCAAGGTGGACTCCCCAGGGCTGTCG	4	-	148482968-148483017	4q42	PREDICTED: Rattus norvegicus RAD18 homolog (S. cerevisiae) (predicted) (Rad18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173737-S	ILMN_301863	UCN2	NM_133385.1	NM_133385.1		170896	19173737	NM_133385.1	Ucn2	NP_596876.1	ILMN_1369080	0000050520	S	157	CTCAGCTTCCTGGAGCAACTCTAAAGCCAGCCCTTACCTGGACACCCGTG	8	+	114004652-114004701	8q32	Rattus norvegicus urocortin 2 (Ucn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence ISS]; The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence TAS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ucn3	Ucn3
Rattus norvegicus	RefSeq	GI_62645637-A	ILMN_282466	VPS39	XM_001075756.1	XM_001075756.1		362199	109470482	XM_001075756.1	Vps39	XP_001075756.1	ILMN_1376308	0005220270	S	4370	AGCCTGAGGATGCTGGAGGGCTGCTTCCCAATAAACAAGCGAAACACCAA				3q35	PREDICTED: Rattus norvegicus vacuolar protein sorting 39 (yeast), transcript variant 1 (Vps39), mRNA.			Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654003-S	ILMN_280435	ADAM10	XM_001054737.1	XM_001054737.1		29650	109484946	XM_001054737.1	Adam10	XP_001054737.1	ILMN_1365891	0003060142	S	1922	TCTGTGAGAAGTATGACTTGGAGGAGTGCACCTGTGCCAGCTCTGATGGC				8q24	PREDICTED: Rattus norvegicus a disintegrin and metalloprotease domain 10 (Adam10), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence ISS]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; Any process that modulates the frequency, rate or extent of osteoclast differentiation [goid 45670] [evidence NAS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain that occurs constantly, regardless of environmental conditions or demands [goid 51089] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653882-S	ILMN_280435	ADAM10	XM_001054737.1	XM_001054737.1		29650	109484946	XM_001054737.1	Adam10	XP_001054737.1	ILMN_1371646	0006940025	S	332	TACACCAAAAACACCAGCGTGCCAAACGAGCAGTCTCACACGAGGACCAG				8q24	PREDICTED: Rattus norvegicus a disintegrin and metalloprotease domain 10 (Adam10), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence ISS]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; Any process that modulates the frequency, rate or extent of osteoclast differentiation [goid 45670] [evidence NAS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain that occurs constantly, regardless of environmental conditions or demands [goid 51089] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645751-S	ILMN_51056	LOC502662	XM_578156.1	XM_578156.1		502662	62645751	XM_578156.1	LOC502662	XP_578156.1	ILMN_2038978	0005260647	S	229	AACAAGAAGGCTCAGCCGGTGGGAAAGGCCAGACTGGAGCTCCTGGTCCA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC502662), mRNA.					
Rattus norvegicus	RefSeq	GI_62639056-S	ILMN_58009	LOC497731	XM_579480.1	XM_579480.1		497731	62639056	XM_579480.1	LOC497731	XP_579480.1	ILMN_1360886	0001230672	S	2788	GGAGATTGTCACTCCTCAGCTGCCCACGGTTGAAGTCGAGAAAGAGCAGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_023976 (LOC497731), mRNA.					
Rattus norvegicus	RefSeq	GI_62641456-S	ILMN_270451	GGA2	XM_001076241.1	XM_001076241.1		293455	109462797	XM_001076241.1	Gga2	XP_001076241.1	ILMN_1365996	0005270048	S	1604	TGGCCACCCGGATGTGCAGGTGTTGCTGTTGACCATGATGAGCACTGCCA				1q36	PREDICTED: Rattus norvegicus golgi associated, gamma adaptin ear containing, ARF binding protein 2, transcript variant 2 (Gga2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ARF, ADP-ribosylation factor, a small monomeric cytosolic GTPase that, when bound to GTP, binds to the membranes of cells [goid 30306] [evidence IEA]; Interacting selectively with ARF, ADP-ribosylation factor, a small monomeric cytosolic GTPase that, when bound to GTP, binds to the membranes of cells [goid 30306] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642543-S	ILMN_69489	RGD1564797_PREDICTED	XM_574698.2	XM_574698.2		499380	109460307	XM_574698.2	RGD1564797_predicted	XP_574698.1	ILMN_1351453	0002350672	S	2730	CGTGGCCAAGGACATGGGAGTTTTCAAGCACTGAGTTTCTCTTCCAAGAC	1	+	266011047-266011096	1q55	PREDICTED: Rattus norvegicus similar to empty spiracles-like protein 2 (predicted) (RGD1564797_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654228-S	ILMN_69346	RGD1564060_PREDICTED	XM_236596.4	XM_236596.4		315981	109483917	XM_236596.4	RGD1564060_predicted	XP_236596.4	ILMN_1361788	0003850446	S	7109	TAGCTCAGCAAGAAACGCTGGGAAGCCTCGGAAGGGACAGGGCAGATGCT	8	+	111132651-111132700	8q32	PREDICTED: Rattus norvegicus similar to procollagen, type VI, alpha 3 isoform 4 (predicted) (RGD1564060_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62244082-S	ILMN_302601	PDRG1	NM_001014762.1	NM_001014762.1		296278	62244082	NM_001014762.1	Pdrg1	NP_001014762.1	ILMN_1366324	0005050181	S	1125	ACAGTGTGCGTGGTATGAGAGCAAAGCTGGCCTCTGTTCCCTGCAGCTCG	3	-	143353074-143353123	3q41	Rattus norvegicus p53 and DNA damage regulated 1 (Pdrg1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			RGD1305096	RGD1305096
Rattus norvegicus	RefSeq	GI_62652750-S	ILMN_273628	LOC687058	XM_001076907.1	XM_001076907.1		687058	109482589	XM_001076907.1	LOC687058	XP_001076907.1	ILMN_1362280	0004730131	S	527	CAAGCACAGGCTCGCCCAGGGACTCGGAATCACACTCCATCCACACTCTT					PREDICTED: Rattus norvegicus hypothetical protein LOC687058 (LOC687058), mRNA.					
Rattus norvegicus	Unigene	Rn.3288	ILMN_161387	RN.3288	Rn.3288		Rn.3288		45193943	CK840788			ILMN_1530303	0003440086	S	14	TTTTTAAGAGAAACCATTTTAATATCTGCAGGCTCACGCAGGATTCAACT					UI-R-AB1-yt-e-06-0-UI.s10 UI-R-AB1 Rattus norvegicus cDNA clone UI-R-AB1-yt-e-06-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62660497-S	ILMN_52132	MCART2_PREDICTED	XM_223434.3	XM_223434.3		305365	62660497	XM_223434.3	Mcart2_predicted	XP_223434.2	ILMN_1364421	0000510164	S	2232	CAGCACTGACTTCTGGGGCTCACTCAGGTAGGACTCAACTGGCTGGAACC				14p11	PREDICTED: Rattus norvegicus mitochondrial carrier triple repeat 2 (predicted) (Mcart2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658893-S	ILMN_53770	ATXN2_PREDICTED	XM_213779.4	XM_213779.4		288663	109495916	XM_213779.4	Atxn2_predicted	XP_213779.4	ILMN_1371229	0000130497	S	3251	TGCAGTGGAGGATGTTCTGGACCGAGTAGAGGCATGTAGGGACTTGTGGC	12	-	35959345-35959394	12q16	PREDICTED: Rattus norvegicus ataxin 2 (predicted) (Atxn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638212-S	ILMN_268882	UST_PREDICTED	XM_001068892.1	XM_001068892.1		361450	109460432	XM_001068892.1	Ust_predicted	XP_001068892.1	ILMN_1367041	0002760102	S	1668	CCCTGAGACCACAGTTCTTCATTCCCACCCCTCTGGAGACTGAGGAGCCA				1p13	PREDICTED: Rattus norvegicus uronyl-2-sulfotransferase (predicted) (Ust_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658185-S	ILMN_54832	TBX1_PREDICTED	XM_341009.3	XM_341009.3		360737	109493572	XM_341009.3	Tbx1_predicted	XP_341010.3	ILMN_1357895	0000610184	S	1899	CCGAGGCGGAAGGAAATGGTATTTATTGTTCTCCGCGAGACCGCGTCGCC	11	+	84410444-84410493	11q23	PREDICTED: Rattus norvegicus T-box 1 (predicted) (Tbx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577842-S	ILMN_282320	OLR119	NM_001000153.1	NM_001000153.1		293255	47577842	NM_001000153.1	Olr119	NP_001000153.1	ILMN_1353266	0006770358	S	905	TCAGTTTGCTTCGCTTGTTCTCACCGCCTTATTCTAGAACTCAACCGTGA				1q32	Rattus norvegicus olfactory receptor 119 (Olr119), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161513590-161512637_ORF; Olr119	ratchr1-161513590-161512637_ORF; Olr119
Rattus norvegicus	RefSeq	GI_62639456-S	ILMN_56094	SNX26_PREDICTED	XM_341826.2	XM_341826.2		361540	62639456	XM_341826.2	Snx26_predicted	XP_341827.2	ILMN_1372316	0002100632	S	2946	GCGCCCCCAGCACTGGACAGGGGAGAGAATCTGTACTATGAAATTGGGGG					PREDICTED: Rattus norvegicus sorting nexin 26 (predicted) (Snx26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659940-S	ILMN_56686	LOC501875	XM_577294.1	XM_577294.1		501875	62659940	XM_577294.1	LOC501875	XP_577294.1	ILMN_1374498	0004010037	S	3041	GATGGCTGCTCTCCCAGAAGGTGAGAAAAGGCTGTTTGAAGGCAGAAGCC					PREDICTED: Rattus norvegicus similar to cornichon homolog 3 (LOC501875), mRNA.					
Rattus norvegicus	RefSeq	GI_62656700-S	ILMN_64025	LOC497973	XM_573167.1	XM_573167.1		497973	62656700	XM_573167.1	LOC497973	XP_573167.1	ILMN_1358995	0005290215	S	776	GTACCATGCTGCACCTCAGCCTCAGTACTCATGTGACTATTTGATATTCC					PREDICTED: Rattus norvegicus similar to myosin head domain containing 1 (LOC497973), mRNA.					
Rattus norvegicus	RefSeq	GI_47577440-S	ILMN_264289	OLR465	NM_001000297.1	NM_001000297.1		295735	47577440	NM_001000297.1	Olr465	NP_001000297.1	ILMN_1356891	0003990687	S	872	GCCTGAGGAATAAGGATGTCATCAATGCTATGAAACAGGCGATCAAGGGA	3	+	69117948-69117997	3q24	Rattus norvegicus olfactory receptor 465 (Olr465), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr465	Olr465
Rattus norvegicus	RefSeq	GI_62641948-S	ILMN_66488	LOC365386	XM_577847.1	XM_577847.1		365386	62641948	XM_577847.1	LOC365386	XP_577847.1	ILMN_1352392	0001050619	S	70	TTCCTCTGGAAGGAAACTGGGAATGTCTGAAAGAGGGCCTGGGTCACGAC				1q41	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (LOC365386), mRNA.					
Rattus norvegicus	RefSeq	GI_62651284-S	ILMN_55935	PPP1R13B_PREDICTED	XM_234555.3	XM_234555.3		314465	62651284	XM_234555.3	Ppp1r13b_predicted	XP_234555.3	ILMN_1369852	0004850022	S	3216	GAGAGATTGCCTCTACTCAAGTGCCGCCTCCCGCCAGACCTTCCCAGATA				6q32	PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 13B (predicted) (Ppp1r13b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655801-A	ILMN_282427	TNFSF12	NM_001001513.2	NM_001001513.2		360548	61889118	NM_001001513.2	Tnfsf12	NP_001001513.2	ILMN_1376502	0002690717	S	595	CGCGGCCTCGCCGAGCTATTGCAGCCCATTATGAGGTTCATCCACAGCCA	10	-	56510603-56510617:56510697-56510731	10q24	Rattus norvegicus tumor necrosis factor ligand superfamily member 12 (Tnfsf12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]	TWEAK	TWEAK
Rattus norvegicus	Unigene	Rn.9561	ILMN_160617	RN.9561	Rn.9561		Rn.9561		13302358	BG377886			ILMN_1530145	0001570154	S	14	TTTTTCTATGACAAACTTTAATGACTCACTGTGTGCAGCTTGAATGACAA					UI-R-CU0-bvg-d-03-0-UI.s1 UI-R-CU0 Rattus norvegicus cDNA clone UI-R-CU0-bvg-d-03-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_27734167-S	ILMN_301524	AQP7	NM_019157.2	NM_019157.2		29171	27734167	NM_019157.2	Aqp7	NP_062030.2	ILMN_1362132	0006130364	S	1029	CCTGGGCTTAATTCACGCCGGCATACCACCACAGGGTTCTTAGAGATTGG	5	-	58433919-58433926:58433927-58433968	5q22	Rattus norvegicus aquaporin 7 (Aqp7), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence TAS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The directed movement of glycerol into, out of, within or between cells. Glycerol is 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 15793] [evidence IDA]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence TAS]; Catalysis of facilitated diffusion of glycerol (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15254] [evidence IDA]; Catalysis of facilitated diffusion of urea (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15265] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_47058985-S	ILMN_285106	TOMM40	NM_212520.1	NM_212520.1		308416	47058985	NM_212520.1	Tomm40	NP_997685.1	ILMN_1373483	0004200497	S	1012	ACACTGTCGCTCTGCGCCTTCCTGAACCACCGCAAGAATAAGTTCCTGTG	1	-	79008919-79008968	1q21	Rattus norvegicus translocase of outer mitochondrial membrane 40 homolog (yeast) (Tomm40), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 32592] [evidence ISS]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IDA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence ISS]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of a protein from the cytoplasm to the mitochondrion [goid 43681] [evidence IMP]; The directed movement of a protein from the cytoplasm to the mitochondrion [goid 43681] [evidence ISS]	Catalysis of the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion [goid 8308] [evidence IEA]	OM38; TOM40	OM38; TOM40
Rattus norvegicus	RefSeq	GI_62644774-S	ILMN_290042	SNAPC4_PREDICTED	XM_001078364.1	XM_001078364.1		362088	109469629	XM_001078364.1	Snapc4_predicted	XP_001078364.1	ILMN_1360280	0006180253	S	4048	CGATGACCTTGACGTGCTCAGGACTCGTCATGCTCGGCATTCCCGGAAAT				3p13	PREDICTED: Rattus norvegicus small nuclear RNA activating complex, polypeptide 4 (predicted) (Snapc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577606-S	ILMN_278491	OLR535	NM_001000672.1	NM_001000672.1		404875	47577606	NM_001000672.1	Olr535	NP_001000672.1	ILMN_1357058	0006290373	S	424	CATGCCCTCCTCACTGGTTCCTACCTGATGGGAGCTCTAGATTCTTCTAT	3	-	70397512-70397561	3q24	Rattus norvegicus olfactory receptor 535 (Olr535), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr535	Olr535
Rattus norvegicus	RefSeq	GI_57527901-S	ILMN_292619	PPP3R1	NM_017309.2	NM_017309.2		29748	57527901	NM_017309.2	Ppp3r1	NP_059005.1	ILMN_1365261	0000460368	S	2437	CTGTCCCAGTGTCAACCGCCATGTGCTCTGCTTCAGGAGGGACTGACTAG	14	+	98098755-98098804	14q22	Rattus norvegicus protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) (Ppp3r1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981019-S	ILMN_295862	HCRTR2	NM_013074.1	NM_013074.1		25605	6981019	NM_013074.1	Hcrtr2	NP_037206.1	ILMN_1357940	0000520242	S	2712	GCTCTTCTGCTATTGAAAAGGGGGACAGAAGACTCCCCCAACTTGCCACG	8	-	81068632-81068681	8q24	Rattus norvegicus hypocretin (orexin) receptor 2 (Hcrtr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence TAS]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence IDA]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence ISS]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence IEA]; Combining with orexin to initiate a change in cell activity [goid 16499] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_6978426-S	ILMN_286722	AANAT	NM_012818.1	NM_012818.1		25120	6978426	NM_012818.1	Aanat	NP_036950.1	ILMN_1374156	0002940037	S	1199	CTCCTAAGTCTGGGAATGAGGGGCAGCCAGGAGCCGGGGACTTGTGAATG	10	+	106713484-106713533	10q32.3	Rattus norvegicus arylalkylamine N-acetyltransferase (Aanat), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical daylength'. The critical daylength varies between species [goid 9648] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; The chemical reactions and pathways resulting in the formation of melatonin (N-acetyl-5-methoxytryptamine) [goid 30187] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin E stimulus [goid 34695] [evidence IDA]; The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night) [goid 43153] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Catalysis of the reaction: acetyl-CoA + an aralkylamine = CoA + an N-acetylaralkylamine [goid 4059] [evidence IDA]; Catalysis of the reaction: acetyl-CoA + an aralkylamine = CoA + an N-acetylaralkylamine [goid 4059] [evidence TAS]; Catalysis of the reaction: acetyl-CoA + an aralkylamine = CoA + an N-acetylaralkylamine [goid 4059] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	AA-NAT; Nat4	AA-NAT; Nat4
Rattus norvegicus	RefSeq	GI_62666895-S	ILMN_290781	RGD1559834_PREDICTED	XM_001060803.1	XM_001060803.1		367816	109511856	XM_001060803.1	RGD1559834_predicted	XP_001060803.1	ILMN_1351755	0001780292	S	348	CGCAACTCCAGACATGGGGGAGATGTATAAGAAAGCTCACGCTGCTATCC				Xq22	PREDICTED: Rattus norvegicus similar to ribosomal protein L5 (predicted) (RGD1559834_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393777-S	ILMN_271695	MPZ	NM_017027.1	NM_017027.1		24564	8393777	NM_017027.1	Mpz	NP_058723.1	ILMN_1359421	0006510397	S	687	TGTATGCCATGCTGGACCACAGCCGAAGCACCAAAGCTGCCAGTGAGAAG	13	+	87045037-87045086	13q24	Rattus norvegicus myelin protein zero (Mpz), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The maintenance of junctions between cells [goid 45217] [evidence IEA]; The maintenance of junctions between cells [goid 45217] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	P0	P0
Rattus norvegicus	RefSeq	GI_62666117-S	ILMN_59052	RGD1564734_PREDICTED	XM_574778.2	XM_574778.2		499455	109509572	XM_574778.2	RGD1564734_predicted	XP_574778.1	ILMN_1363437	0006770039	S	196	TACCAAAGAAGTCGCACTGGAGAGTTGAGGCACGGCCCAAAGCGGTCAGG	20	-	38447003-38447052	20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1564734_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577138-S	ILMN_301945	OLR754	NM_001000368.1	NM_001000368.1		296005	47577138	NM_001000368.1	Olr754	NP_001000368.1	ILMN_1354222	0006350711	S	283	GGGGGCTGCATGAGTCAGATCCTCTGTGTACATTTCTTTGGAGGAAGCGA	3	+	96959021-96959070	3q34	Rattus norvegicus olfactory receptor 754 (Olr754), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr754	Olr754
Rattus norvegicus	RefSeq	GI_56090436-S	ILMN_266965	PRUNE	NM_001007697.1	NM_001007697.1		310664	56090436	NM_001007697.1	Prune	NP_001007698.1	ILMN_1361012	0002450735	S	1451	CTGAGTCAAGATGATGAAGACCCTCCTCTGCCGCCCACGCCCATGAACAG	2	-	190165552-190165601	2q34	Rattus norvegicus prune homolog (Drosophila) (Prune), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: diphosphate + H2O = 2 phosphate [goid 4427] [evidence IEA]; Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643531-S	ILMN_52092	LOC499632	XM_579991.1	XM_579991.1		499632	62643531	XM_579991.1	LOC499632	XP_579991.1	ILMN_1367828	0005130368	S	431	AGCAGAGAGAACTGAAGAAGACTGGGGGTGGGGATGCACGTGCCTTCTGC					PREDICTED: Rattus norvegicus LOC499632 (LOC499632), mRNA.					
Rattus norvegicus	RefSeq	GI_62648403-S	ILMN_66958	LOC502898	XM_578400.1	XM_578400.1		502898	62648403	XM_578400.1	LOC502898	XP_578400.1	ILMN_1364992	0002470167	S	1409	TGAGTCAACAAGTCAGGTGGAACAGGTGGAGCTGGAGCTGGGGCAGGAGA					PREDICTED: Rattus norvegicus similar to neuronal interacting factor X 1 (NIX1) (LOC502898), mRNA.					
Rattus norvegicus	RefSeq	GI_61557084-S	ILMN_282094	SPTBN1	NM_001013130.1	NM_001013130.1		305614	61557084	NM_001013130.1	Sptbn1	NP_001013148.1	ILMN_1365940	0000780338	S	7001	GATCCAGGCTATCACCTCTGCCATCTCCTCTGACAAGCACGACACGTCTG	14	+	111245956-111246005	14q22	Rattus norvegicus spectrin, beta, non-erythrocytic 1 (Sptbn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins [goid 8091] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	 [goid 7182] [evidence IEA];  [goid 7182] [evidence ISS];  [goid 7184] [evidence IEA];  [goid 7184] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	Sptbn1	Sptbn1
Rattus norvegicus	RefSeq	GI_62647600-S	ILMN_51248	LOC502841	XM_578341.1	XM_578341.1		502841	62647600	XM_578341.1	LOC502841	XP_578341.1	ILMN_1354238	0001940142	S	499	GCTGGGGAGACTGTGCAGACAATGAAAACCAGCTTAATGGCACCAACACA					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa variable region (LOC502841), mRNA.					
Rattus norvegicus	RefSeq	GI_62654973-S	ILMN_65781	LOC501132	XM_576552.1	XM_576552.1		501132	62654973	XM_576552.1	LOC501132	XP_576552.1	ILMN_1349490	0002650673	S	45	ATGGAAGGAGTTGAATGTTTGGGGAGATCCTGGAAGTGGGCGGGCGACGG				9q22	PREDICTED: Rattus norvegicus similar to actin related protein 2/3 complex, subunit 5-like (LOC501132), mRNA.					
Rattus norvegicus	RefSeq	GI_62638507-S	ILMN_52943	LOC365092	XM_344810.2	XM_344810.2		365092	62638507	XM_344810.2	LOC365092	XP_344811.2	ILMN_1350885	0000870239	S	2110	GAACAGGAAGGCCATCGAAAACCAGATCCGGCAATGGGAGCAGAACCTGG					PREDICTED: Rattus norvegicus similar to mKIAA2016 protein (LOC365092), mRNA.					
Rattus norvegicus	RefSeq	GI_62658112-S	ILMN_266863	FAM43A	NM_001039002.1	NM_001039002.1		288031	84781639	NM_001039002.1	Fam43a	NP_001034091.1	ILMN_1355801	0006130047	S	1253	CCCAGCTCCGGGACACCACTTCCTCTGTCAGGCTGTGCTTCAGACATGAA	11	-	72011594-72011643	11q22	Rattus norvegicus family with sequence similarity 43, member A (Fam43a), mRNA.				MGC116410	MGC116410
Rattus norvegicus	RefSeq	GI_62640955-S	ILMN_284539	RGD1565895_PREDICTED	XR_008288.1	XR_008288.1		308850	109462486	XR_008288.1	RGD1565895_predicted		ILMN_1360157	0002350181	S	1775	GCATGGCACTTGGCCCCCCTGCTGGAACCTCCATGTGAACAGCCCTTTAA				1q32	PREDICTED: Rattus norvegicus similar to DRE1 protein (predicted) (RGD1565895_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577102-S	ILMN_267844	OLR318	NM_001000505.1	NM_001000505.1		309221	47577102	NM_001000505.1	Olr318	NP_001000505.1	ILMN_1352717	0004120020	S	564	CGCATGTGCAGACACCCATGTCCATGAAGCTACTCTGTTTGTGGTCAGTG	1	-	214671956-214672005	1q43	Rattus norvegicus olfactory receptor 318 (Olr318), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr318	Olr318
Rattus norvegicus	RefSeq	GI_8394090-S	ILMN_48498	PSME2	NM_017257.2	NM_017257.2		29614	67972658	NM_017257.2	Psme2	NP_058953.1	ILMN_1354317	0000840446	S	296	GCTTCTGGCCCTGCTTGCCTTGGTTAAGCCAGAAGTCTGGACTCTCAAAG	15	-	33725263-33725312	15p13	Rattus norvegicus proteasome (prosome, macropain) 28 subunit, beta (Psme2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit complex that activates the hydrolysis of small nonubiquitinated peptides by binding to the proteasome core complex [goid 8537] [evidence IEA]	The process by which an antigen-presenting cell expresses antigen (peptide or lipid) of exogenous origin on its cell surface in association with an MHC protein complex [goid 19884] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence TAS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence ISS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658622-S	ILMN_60096	ZCWPW1_PREDICTED	XM_222057.3	XM_222057.3		304368	62658622	XM_222057.3	Zcwpw1_predicted	XP_222057.3	ILMN_1352643	0006290128	S	1764	GGCAGCCTTCAGGAATGCCCAATATCACCATGCCCCTTAGAGTTGCAGAG				12q12	PREDICTED: Rattus norvegicus zinc finger, CW-type with PWWP domain 1 (predicted) (Zcwpw1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643628-S	ILMN_56931	RGD1560683_PREDICTED	XM_578014.2	XM_578014.2		365779	109464807	XM_578014.2	RGD1560683_predicted	XP_578014.2	ILMN_1370849	0001410025	S	110	ACGGGTCCATCCCAATGAATGTGGCCAAGGTTGACAGGAGCATAGGCCAG	2	-	129356966-129357015	2q26	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S21 (predicted) (RGD1560683_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718247-S	ILMN_276275	LOC689554	XM_001071174.1	XM_001071174.1		689554	109513354	XM_001071174.1	LOC689554	XP_001071174.1	ILMN_1353942	0004060722	S	765	CCCACTTAAGCAGGAGAACAAGGAGGGACATCTTGAGTGTGCACTGAAAC	Un|NW_047878.1	+	3369786-3369835		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC689554), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642047-S	ILMN_48694	RGD1565754_PREDICTED	XM_574642.2	XM_574642.2		499335	109459983	XM_574642.2	RGD1565754_predicted	XP_574642.1	ILMN_1354759	0002810593	S	364	GGACTATGATGTCTCTTTTGGGGATGGCGTGCTCACCATTAAGCTGGGCG	1	-	227649601-227649629:227664457-227664477	1q51	PREDICTED: Rattus norvegicus similar to frataxin (predicted) (RGD1565754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639904-S	ILMN_279881	TMEM86A_PREDICTED	XM_001080842.1	XM_001080842.1		308602	109461976	XM_001080842.1	Tmem86a_predicted	XP_001080842.1	ILMN_1354781	0004610239	S	877	TACGTGACCCTTATCAGCTTCATGGGCTGGAGGGCTATGGCAGGGCTGCG				1q22	PREDICTED: Rattus norvegicus transmembrane protein 86A (predicted) (Tmem86a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653415-S	ILMN_276047	RGD1564436_PREDICTED	XM_001053731.1	XM_001053731.1		503194	109484413	XM_001053731.1	RGD1564436_predicted	XP_001053731.1	ILMN_1372781	0002340433	S	1712	CTGACACATTTCTGAAGTTGGAGGGCTGGGTGAAGGGGGTTGTGCTCGTC				8q13	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC47419 (predicted) (RGD1564436_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658292-S	ILMN_63230	LOC497682	XM_579511.1	XM_579511.1		497682	62658292	XM_579511.1	LOC497682	XP_579511.1	ILMN_1374606	0003190471	S	9954	GGCCAGTGGCGTTTCTCTCCTGGACTGTGATTCAGTAGCTGATGAAGAAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031542 (LOC497682), mRNA.					
Rattus norvegicus	RefSeq	GI_29789035-S	ILMN_265647	ITGAM	NM_012711.1	NM_012711.1		25021	29789035	NM_012711.1	Itgam	NP_036843.1	ILMN_1365381	0005220097	S	3243	TCCGGGGCAGGAGACGTTTGTGAAGGCTCAGACAGAGACCAAAGTGGAGC	1	+	187384679-187384709:187384927-187384945	1q36	Rattus norvegicus integrin alpha M (Itgam), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]	Interacting selectively with an opsonin, such as a complement component or antibody, deposited on the surface of a bacteria, virus, immune complex, or other particulate material [goid 1846] [evidence ISS]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit [goid 43395] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	Cd11b	Cd11b
Rattus norvegicus	RefSeq	GI_62659103-S	ILMN_66622	LOC501845	XM_577258.1	XM_577258.1		501845	62659103	XM_577258.1	LOC501845	XP_577258.1	ILMN_1374471	0000580403	S	2963	GATCATGTTGGCTGTGGAAGTTTTCTCCATCTTGGCCTCCAGCACAGGTC					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC501845), mRNA.					
Rattus norvegicus	RefSeq	GI_62651057-S	ILMN_67945	RGD1560978_PREDICTED	XM_576074.2	XM_576074.2		500693	109478505	XM_576074.2	RGD1560978_predicted	XP_576074.2	ILMN_2040801	0005910274	S	195	CCGCATAAAGAAGCTGGCCAGGAACATACTGGATGAGAGGACAGAAGTGG	6	+	108492460-108492509	6q31	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1560978_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653025	ILMN_276998	CCDC65	NM_001014203.1	NM_001014203.1		362994	62079140	NM_001014203.1	Ccdc65	NP_001014225.1	ILMN_1650360	0006040465	S	1552	CCTGGCGGTGACAGAGGACCTGGTGGCGACAGAAGACTGACTTACAACGT	7	+	137489638-137489687	7q36	Rattus norvegicus coiled-coil domain containing 65 (Ccdc65), mRNA.					
Rattus norvegicus	RefSeq	GI_62665989-S	ILMN_273534	RGD1559704_PREDICTED	XM_001057559.1	XM_001057559.1		499433	109510134	XM_001057559.1	RGD1559704_predicted	XP_001057559.1	ILMN_1356078	0006180026	S	791	CCGCTGTGGATCTGACATGCCGCCTGGAGAAACCTGACAAGCATGATGAC				20q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1559704_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18777777-S	ILMN_265080	XPNPEP1	NM_131913.1	NM_131913.1		170751	18777777	NM_131913.1	Xpnpep1	NP_571988.1	ILMN_1350525	0007050037	S	2215	TGACTGCTCTGCGATGGTCTCCTTCCAGGTGCTGGTACCTCAGTCGCGGT	1	-	259089706-259089755	1q55	Rattus norvegicus X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (Xpnpep1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660754	ILMN_282099	CCDC117	NM_001017502.1	NM_001017502.1		498404	62945355	NM_001017502.1	Ccdc117	NP_001017502.1	ILMN_1650984	0006450092	S	1844	GCATGGCAGGATGTGTAATGAGGGCTGTAGAGTGGTAAGAGGTCTGCAGC	14	-	86161857-86161906	14q21	Rattus norvegicus coiled-coil domain containing 117 (Ccdc117), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]				
Rattus norvegicus	RefSeq	Rn.20126	ILMN_282099	CCDC117	NM_001017502.1	NM_001017502.1		498404	62945355	NM_001017502.1	Ccdc117	NP_001017502.1	ILMN_1530386	0005670452	S	1582	GTATTAGCAAGTTGAGTTTTTTAATGTTGGTTCCAAAAACAGTGAATTAG	14	-	86162119-86162168	14q21	Rattus norvegicus coiled-coil domain containing 117 (Ccdc117), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62078950-S	ILMN_290637	PRICKLE3	NM_001014110.1	NM_001014110.1		317380	62078950	NM_001014110.1	Prickle3	NP_001014132.1	ILMN_1369659	0003360575	S	1905	CCAGACCCGGGACAAGAACTGCATCGTGGCTTGAAGGAAGGCAGCTTTAG	X	-	26878718-26878736:26878737-26878767	Xq13	Rattus norvegicus prickle homolog 3 (Drosophila) (Prickle3), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653989-S	ILMN_57495	LOC503213	XM_580263.1	XM_580263.1		503213	62653989	XM_580263.1	LOC503213	XP_580263.1	ILMN_1365892	0002060735	S	2929	CCCAGGGAGGCCATCTGAAACACGATGTGGACTTCCGTGGCCATACAGTG					PREDICTED: Rattus norvegicus LOC503213 (LOC503213), mRNA.					
Rattus norvegicus	RefSeq	GI_27685782-S	ILMN_269948	GPLD1	XM_001070303.1	XM_001070303.1		291132	109505768	XM_001070303.1	Gpld1	XP_001070303.1	ILMN_1363196	0002450112	S	2975	AGTGGGTCTTTGTCGGAGGAAGTTATGTTACTGGGGTGTATCAGGACCCC				17p11	PREDICTED: Rattus norvegicus glycosylphosphatidylinositol specific phospholipase D1 (Gpld1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	 [goid 6507] [evidence ISS];  [goid 6507] [evidence IEA]	Catalysis of the reaction: glycoprotein phosphatidylinositol + H2O = phosphatidate + glycoprotein inositol [goid 4621] [evidence TAS]; Catalysis of the reaction: glycoprotein phosphatidylinositol + H2O = phosphatidate + glycoprotein inositol [goid 4621] [evidence IEA]; Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate [goid 4630] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644027-S	ILMN_55441	HIST2H2AA_PREDICTED	XM_345255.2	XM_345255.2		365877	62644027	XM_345255.2	Hist2h2aa_predicted	XP_345256.2	ILMN_1361488	0004050097	S	48	AAGGCACATTTCGCCAGCTTCCTGACCAGCAGAGAGCGCGAGCAGGCCGG				2q34	PREDICTED: Rattus norvegicus histone 2, H2aa (predicted) (Hist2h2aa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641081-S	ILMN_295580	RGD1311619_PREDICTED	XM_001075408.1	XM_001075408.1		308910	109462611	XM_001075408.1	RGD1311619_predicted	XP_001075408.1	ILMN_1363932	0005270750	S	1809	ACAGGGCCTACAGGAGCGAGTGCAGAACTGGAACAGGATCAGGAAAAGCC					PREDICTED: Rattus norvegicus similar to FLJ00251 protein (predicted) (RGD1311619_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394192-S	ILMN_271404	LIPF	NM_017341.1	NM_017341.1		50682	8394192	NM_017341.1	Lipf	NP_059037.1	ILMN_1362989	0002470168	S	1040	CTGTGCCAGTTGCAGTGTGGAACGGTGGCAATGACATCCTGGCTGATCCC	1	+	237856265-237856314	1q52	Rattus norvegicus lipase, gastric (Lipf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence IDA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence TAS]; Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate [goid 16615] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Rnlp; RNLIP	Rnlp; RNLIP
Rattus norvegicus	RefSeq	GI_62665355-S	ILMN_279526	RGD1562686_PREDICTED	XM_001078877.1	XM_001078877.1		307913	109508983	XM_001078877.1	RGD1562686_predicted	XP_001078877.1	ILMN_1365171	0001230435	S	3629	AGGAGGTGGACCAGGACTCTGAGGATGACAGCGAGGAGGAAGCTGAGGAA				19q12	PREDICTED: Rattus norvegicus similar to genetic suppressor element 1 (predicted) (RGD1562686_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644219-S	ILMN_65141	LOC499694	XM_575020.1	XM_575020.1		499694	62644219	XM_575020.1	LOC499694	XP_575020.1	ILMN_1350362	0001450372	S	709	GAAGCAGACCTTTCATTTTCCAAGAGGTCCGGATTTATGTGGATGCTGTC				2q41	PREDICTED: Rattus norvegicus similar to amylase 2, pancreatic (LOC499694), mRNA.					
Rattus norvegicus	RefSeq	GI_62640418-S	ILMN_265953	TRPM1	NM_001037733.1	NM_001037733.1		361586	83627698	NM_001037733.1	Trpm1	NP_001032822.1	ILMN_1359360	0000380273	S	3008	CATGGTTGGGGCCATCCTTCGCCTCCAGAACCAGCCATACATGGGCTATG	1	+	118674125-118674174	1q22	Rattus norvegicus transient receptor potential cation channel, subfamily M, member 1 (Trpm1), transcript variant 2, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663605-S	ILMN_58873	ZFP192_PREDICTED	XM_225349.3	XM_225349.3		306974	62663605	XM_225349.3	Zfp192_predicted	XP_225349.3	ILMN_1364559	0001400427	S	2388	GGACGCATTAGTGATGATGGTGGGCGTGATGGAAAGACAGAGGTGAGTGG				17q11	PREDICTED: Rattus norvegicus zinc finger protein 192 (predicted) (Zfp192_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642630-S	ILMN_53040	LOC502402	XM_577882.1	XM_577882.1		502402	62642630	XM_577882.1	LOC502402	XP_577882.1	ILMN_1374602	0001570092	S	373	AGGGAGCATACCAGCCACAGTGGGAACAATGGAAGTGGGAGTGTCCTTGG					PREDICTED: Rattus norvegicus similar to NSD1 protein (LOC502402), mRNA.					
Rattus norvegicus	RefSeq	GI_57113782-S	ILMN_275299	V1RC16	NM_001008911.1	NM_001008911.1		494262	57113782	NM_001008911.1	V1rc16	NP_001008911.1	ILMN_1367010	0006200398	S	658	GCATCACCTGAGAAAAGGGCCACACAGTCTATCTTGGTGCTGGTCATTTG	4	+	86495535-86495584	4q24	Rattus norvegicus vomeronasal 1 receptor, C16 (V1rc16), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638434-S	ILMN_49326	AYTL2_PREDICTED	XM_341747.3	XM_341747.3		361467	109457651	XM_341747.3	Aytl2_predicted	XP_341748.2	ILMN_1357096	0004210408	S	3443	GGAATCCTGAGCAGAGCTGGGACGGATGTTCGTCTCCTGATGACTCTCGC	1	-	30573394-30573443	1p11	PREDICTED: Rattus norvegicus acyltransferase like 2 (predicted) (Aytl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21728405-S	ILMN_273645	SLC25A25	NM_145677.1	NM_145677.1		246771	21728405	NM_145677.1	Slc25a25	NP_663710.1	ILMN_1367573	0002680411	S	2845	ACGGCAGTGAGGTGCTTCATTCACCAGGAATTTGGTGTGAGGGTGAGGAC	3	-	11539657-11539706	3p11	Rattus norvegicus solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 (Slc25a25), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Mcsc; Pcscl	Mcsc; Pcscl
Rattus norvegicus	RefSeq	GI_62666770-S	ILMN_48415	LOC367771	XM_578976.1	XM_578976.1		367771	62666770	XM_578976.1	LOC367771	XP_578976.1	ILMN_1350084	0006020524	S	30	GGGGAGGGTGAACAGCTGACAGAGGAGGTGGAGTCAACTCAGAATGCTCT				Xq21	PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC367771), mRNA.					
Rattus norvegicus	RefSeq	GI_62667292-S	ILMN_295221	LOC679974	XM_001055134.1	XM_001055134.1		679974	109511104	XM_001055134.1	LOC679974	XP_001055134.1	ILMN_1363623	0002760095	S	659	GAGGAGAAAGAACACTGCTGGCCCTGCTTTCCCTGGTAACTACTTGCCGG	X	+	122776291-122776340	Xq35	PREDICTED: Rattus norvegicus similar to transcription elongation factor A (SII)-like 3 (LOC679974), mRNA.					
Rattus norvegicus	RefSeq	GI_62639792-S	ILMN_282110	E2F8	XM_001080259.1	XM_001080259.1		308607	109461999	XM_001080259.1	E2f8	XP_001080259.1	ILMN_1370740	0000670019	S	3285	TCCCTCTCAGCAAATGTTTGAGTTACCGAACACAGCACCTGCTCAAACTC				1q22	PREDICTED: Rattus norvegicus E2F transcription factor 8, transcript variant 1 (E2f8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642604-S	ILMN_282110	E2F8	XM_001080259.1	XM_001080259.1		308607	109461999	XM_001080259.1	E2f8	XP_001080259.1	ILMN_1375206	0006860048	S	411	CCTGGGTCCTTTAACCACACCAACCAAGCCCAAGGAAGTCTCCCAAGGAG				1q22	PREDICTED: Rattus norvegicus E2F transcription factor 8, transcript variant 1 (E2f8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648961-I	ILMN_50015	CORO2A_PREDICTED	XM_575819.1	XM_575819.1		313235	62648961	XM_575819.1	Coro2a_predicted	XP_575819.1	ILMN_1375888	0004540278	S	3341	AGGAACTTCGTGTGGATGAGGAGAGTGCTTGGAGATGAGCTTGTACCCCC				5q22	PREDICTED: Rattus norvegicus coronin, actin binding protein 2A (predicted) (Coro2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19745165-S	ILMN_268344	COL5A1	NM_134452.1	NM_134452.1		85490	19745165	NM_134452.1	Col5a1	NP_604447.1	ILMN_1353887	0000450301	S	5365	TGGTGGATGGCTGTGCTACCAAGAAAGGCTACCAGAAGACGGTGCTGGAG	3	+	6966742-6966758:6970890-6970922	3p12	Rattus norvegicus collagen, type V, alpha 1 (Col5a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils [goid 5588] [evidence TAS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope [goid 51128] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_54607174-S	ILMN_279860	SYT15	NM_181632.2	NM_181632.2		306285	54607174	NM_181632.2	Syt15	NP_853663.2	ILMN_1368001	0005290358	S	3803	ATCGGTGTGGCTATACAGATGAGCCACGAGTGAACTGAAGTGAACTCCAG	16	+	9862595-9862644	16p16	Rattus norvegicus synaptotagmin XV (Syt15), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC91393; sytXV	MGC91393; sytXV
Rattus norvegicus	RefSeq	GI_62663076-S	ILMN_289030	MRPL36_PREDICTED	XM_001061033.1	XM_001061033.1		364656	109460656	XM_001061033.1	Mrpl36_predicted	XP_001061033.1	ILMN_1363206	0004610168	S	417	GCCTTAGGGCCTTGTTGAACCTGCTTTCCCCACATTGTAGCCCAGTTCCT				17p14	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L36 (predicted) (Mrpl36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666766-S	ILMN_274669	TLR7_PREDICTED	XM_001066039.1	XM_001066039.1		317468	109511689	XM_001066039.1	Tlr7_predicted	XP_001066039.1	ILMN_1371182	0002480524	S	3207	GAGGCTCTGCAGCAGTTCTGTCCTTGAGTGGCCTACAAATCCACAAGCTC				Xq21	PREDICTED: Rattus norvegicus toll-like receptor 7 (predicted) (Tlr7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576552-S	ILMN_268477	OLR1640	NM_001000099.1	NM_001000099.1		290049	47576552	NM_001000099.1	Olr1640	NP_001000099.1	ILMN_1369119	0001240039	S	324	GGGAAGCTCCCAATGTTTCCTATACACCACAATGGCCTATGACAGGTACC	15	-	27841775-27841824	15p14	Rattus norvegicus olfactory receptor 1640 (Olr1640), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1640	Olr1640
Rattus norvegicus	RefSeq	GI_62660161-S	ILMN_51093	LOC305185	XM_223203.3	XM_223203.3		305185	62660161	XM_223203.3	LOC305185	XP_223203.3	ILMN_1368641	0001740156	S	1319	TTCAGTGAAGACGGTGAGTCTCTAGCTTGCATCTGTCCCAGACGCCCCTG					PREDICTED: Rattus norvegicus similar to GPI-gamma 4; GPIgamma4 (LOC305185), mRNA.					
Rattus norvegicus	Unigene	Rn.24461	ILMN_161471	RN.24461	Rn.24461		Rn.24461		45191363	CK839491			ILMN_1530302	0000870086	S	90	AGGGGAGAGAGCATTTACAAAAATCAGCATCTCAATAAAACAAAGACATT					UI-R-BJ1-aue-b-11-0-UI.s10 UI-R-BJ1 Rattus norvegicus cDNA clone UI-R-BJ1-aue-b-11-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62718175-S	ILMN_69330	LOC501311	XM_576724.1	XM_576724.1		501311	62718175	XM_576724.1	LOC501311	XP_576724.1	ILMN_1351644	0006940112	S	2715	ACTCATGCTTGCATGGACACGTTCCTGAGATGCTGGATGTGAAATGCCGC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC088860 (LOC501311), mRNA.					
Rattus norvegicus	RefSeq	GI_62654725-S	ILMN_49363	AARSL_PREDICTED	XM_236942.4	XM_236942.4		301254	109485813	XM_236942.4	Aarsl_predicted	XP_236942.4	ILMN_1362563	0002900519	S	2675	GCCCAGTCCCTCTCGGTGCTGGTAAAGGTCGTGCGGCAGCTGTGCAAACA	9	-	11086364-11086399:11086506-11086519	9q12	PREDICTED: Rattus norvegicus alanyl-tRNA synthetase like (predicted) (Aarsl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667098-S	ILMN_278078	ATRX	XM_001057806.1	XM_001057806.1		246284	109512167	XM_001057806.1	Atrx	XP_001057806.1	ILMN_1367586	0002850309	S	7338	TGGTATGCAGCCACCACCCTTACAGCGTGCACCACCCCCAATGAGAAGCA				Xq31	PREDICTED: Rattus norvegicus alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA.	A chromosome found in the nucleus of a eukaryotic cell [goid 228] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31342207-S	ILMN_275841	CACNA2D2	NM_175592.2	NM_175592.2		300992	31342207	NM_175592.2	Cacna2d2	NP_783182.1	ILMN_1362200	0006660348	S	3265	TGTGAGCTGGTGCAGAGACCGCGATACCGAACAGGCCCGCACATCTGTTT	8	+	112775139-112775188	8q32	Rattus norvegicus calcium channel, voltage-dependent, alpha 2/delta subunit 2 (Cacna2d2), mRNA.	A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence TAS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism [goid 46622] [evidence ISS]; The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48747] [evidence ISS]; Any process involved in the generation of rhythmic, synchronous synaptic inputs in a neural circuit [goid 60024] [evidence ISS]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS];  [goid 5246] [evidence TAS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12621081-S	ILMN_264374	MID1	NM_022927.1	NM_022927.1		54252	12621081	NM_022927.1	Mid1	NP_075216.1	ILMN_1353476	0000670446	S	2031	ACCCCCGGCGTGTAGGCATCCTGCTGGACTATGATAATGGCTCAATCGCT	X	-	44752131-44752180	Xq21	Rattus norvegicus midline 1 (Mid1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Midline1; Fxy	Midline1; Fxy
Rattus norvegicus	RefSeq	GI_40018537-S	ILMN_295338	ADI1	NM_199097.1	NM_199097.1		298934	40018537	NM_199097.1	Adi1	NP_954528.1	ILMN_1368814	0000360167	S	929	CCTCCCTCTCTGATATTTGGGTGGGGAAGTGGGGTTGTTGTTCCTCTTTC	6	+	46559162-46559211	6q16	Rattus norvegicus acireductone dioxygenase 1 (Adi1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins [goid 9086] [evidence IEA]; The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine [goid 19509] [evidence ISS]; The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine [goid 19509] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with nickel (Ni) ions [goid 16151] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Alp1; MGC108527	Alp1; MGC108527
Rattus norvegicus	RefSeq	GI_62651839-S	ILMN_62236	NDUFA7_PREDICTED	XM_216859.4	XM_216859.4		299643	109480346	XM_216859.4	Ndufa7_predicted	XP_216859.1	ILMN_1350848	0001340398	S	745	GAGCCACTGTGTGTCATTTTGGGCTCTGAGGATGGAATTTAGGTCTCAGC	7	+	16334225-16334274	7q12	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a) (predicted) (Ndufa7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577166-S	ILMN_301629	OLR343	NM_001000254.1	NM_001000254.1		293788	47577166	NM_001000254.1	Olr343	NP_001000254.1	ILMN_1363136	0002260577	S	752	GTACCGTTATCTTCATGTATTTGCAGCCCAGTTCCAGTCACACCATGGGC	1	-	216049939-216049988	1q43	Rattus norvegicus olfactory receptor 343 (Olr343), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr343	Olr343
Rattus norvegicus	RefSeq	GI_62649168-S	ILMN_298274	LOC683529	XM_001061448.1	XM_001061448.1		683529	109476646	XM_001061448.1	LOC683529	XP_001061448.1	ILMN_1363391	0005130095	S	3798	GTGGAACGTGTGGCAAAGCATGAAGACAGGGTACAGGGATGAACTCTACC					PREDICTED: Rattus norvegicus similar to ADAMTS-like 3, transcript variant 2 (LOC683529), mRNA.					
Rattus norvegicus	RefSeq	GI_62649166-S	ILMN_298274	LOC683529	XM_001061448.1	XM_001061448.1		683529	109476646	XM_001061448.1	LOC683529	XP_001061448.1	ILMN_1361523	0002970609	S	382	CAAGTGCTCTGAGTCATGTGGAGGAGGTGTCCAGGAGGCTGTGGTGAGCT					PREDICTED: Rattus norvegicus similar to ADAMTS-like 3, transcript variant 2 (LOC683529), mRNA.					
Rattus norvegicus	RefSeq	GI_62717978-S	ILMN_58925	LOC363322	XM_343662.2	XM_343662.2		363322	62717978	XM_343662.2	LOC363322	XP_343663.2	ILMN_1355384	0002350301	S	570	AGCCAGAAGGTCAGCCCTTTGTGTTGAAGTCCATTGGCTGAGGGACTGGG					PREDICTED: Rattus norvegicus similar to Mic2l1 (LOC363322), mRNA.					
Rattus norvegicus	RefSeq	GI_62667620-S	ILMN_277425	DMRTC1A	NM_001025288.1	NM_001025288.1		501668	70608120	NM_001025288.1	Dmrtc1a	NP_001020459.1	ILMN_1374041	0004610142	S	662	GCTCTGGTTCGCTGCCTTCTGGACATCTGGATTGCATGTCCCTCTTGACC	X|NW_048062.1	+	47087-47136		Rattus norvegicus DMRT-like family C1a (Dmrtc1a), mRNA.		The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_27687484-S	ILMN_275399	LRRC30_PREDICTED	XM_001054231.1	XM_001054231.1		301711	109487625	XM_001054231.1	Lrrc30_predicted	XP_001054231.1	ILMN_1367898	0001780152	S	722	ACGACATCCAGACCCTCCCAGATGAACTCTACCTGCTGTGCAGACTGGGG				9q37	PREDICTED: Rattus norvegicus leucine rich repeat containing 30 (predicted) (Lrrc30_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718455	ILMN_61163	LOC497842	XM_343722.3	XM_343722.3		497842	109513658	XM_343722.3	LOC497842	XP_343723.3	ILMN_1650643	0006450398	S	256	CAACGCCGCCGGAGGGTCAACCTGGACTCACTGGGCGAGAGTATCAGTCT	Un|NW_047894.1	-	114588-114637		PREDICTED: Rattus norvegicus similar to guanylate cyclase 1, soluble, alpha 2 (LOC497842), mRNA.					
Rattus norvegicus	RefSeq	GI_47576780-S	ILMN_286211	OLR185	NM_001000183.1	NM_001000183.1		293330	47576780	NM_001000183.1	Olr185	NP_001000183.1	ILMN_1365144	0000520128	S	708	TCTTCCCTCTCAAGATGCTCGCGTGAAGGCTCTTAATACGTGTAGCTCCC	1	+	162804342-162804391	1q33	Rattus norvegicus olfactory receptor 185 (Olr185), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr185	Olr185
Rattus norvegicus	RefSeq	GI_18104932-S	ILMN_290705	FMOD	NM_080698.1	NM_080698.1		64507	18104932	NM_080698.1	Fmod	NP_542429.1	ILMN_1371407	0004120168	S	2560	AGCCATCGGGTTCTCTAGACTCACTGGGAAAGAGCCACGGGTAGCCAGTG	13	+	46997947-46997996	13q13	Rattus norvegicus fibromodulin (Fmod), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21728391-S	ILMN_55620	BCAS1	NM_145670.2	NM_145670.2		246755	78126176	NM_145670.2	Bcas1	NP_663703.2	ILMN_1354404	0003710152	S	1583	CCGGCTCTGTAGCCAGTGTTGCTGTACGCTCTGAACCTGAAGAGGGGAAG	3	-	161395580-161395629	3q42	Rattus norvegicus breast carcinoma amplified sequence 1 (Bcas1), mRNA.	Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	PMES-2; Band83; Pmes-2b; Pmes-2 ed; Pmes-2c; Pmes-2d	PMES-2; Band83; Pmes-2b; Pmes-2 ed; Pmes-2c; Pmes-2d
Rattus norvegicus	RefSeq	GI_62654199-S	ILMN_68052	RAB6B_PREDICTED	XM_343459.3	XM_343459.3		363123	109483889	XM_343459.3	Rab6b_predicted	XP_343460.3	ILMN_1353058	0001580010	S	4276	AGAAAGCATACTTACCCCGTGGTGACAGCAGCCTGGTTGGCAGTGAGGGG	8	+	108190047-108190096	8q32	PREDICTED: Rattus norvegicus RAB6B, member RAS oncogene family (predicted) (Rab6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.13756	ILMN_68052	RAB6B_PREDICTED	XM_343459.3	XM_343459.3		363123	109483889	XM_343459.3	Rab6b_predicted	XP_343460.3	ILMN_1530445	0001450301	S	4085	ATATTGTCAAATAACTTGTGGTTGTCTTGCCTTCAATAAAAATAGTGCAT	8	+	108189856-108189905	8q32	PREDICTED: Rattus norvegicus RAB6B, member RAS oncogene family (predicted) (Rab6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576100-S	ILMN_267080	OLR1399	NM_001001095.1	NM_001001095.1		405990	47576100	NM_001001095.1	Olr1399	NP_001001095.1	ILMN_1367017	0001580672	S	849	GCTCAACCCTCTGATCTATACCCTGAGGAACAAGGACGTGAAGGGGGCTC	10	+	34954590-34954639	10q22	Rattus norvegicus olfactory receptor 1399 (Olr1399), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1399	Olr1399
Rattus norvegicus	RefSeq	GI_62663114-S	ILMN_58336	LOC364660	XM_344562.2	XM_344562.2		364660	62663114	XM_344562.2	LOC364660	XP_344563.2	ILMN_1372237	0004590551	S	1051	GTGTGCTCAGAACAAACATGGGGTCGGAGGTGGGACCTGTGACATGTGAC					PREDICTED: Rattus norvegicus similar to CG4502-PA (predicted) (LOC364660), mRNA.					
Rattus norvegicus	RefSeq	GI_16758289-S	ILMN_263637	CDC5L	NM_053527.1	NM_053527.1		85434	16758289	NM_053527.1	Cdc5l	NP_445979.1	ILMN_1373826	0005670603	S	2384	CTCTGCTATTCCCCGTAGGCTAGAGTGTCTAAAGGAAGATGTGCAGCGGC	9	+	11203038-11203063:11203714-11203737	9q12	Rattus norvegicus CDC5 cell division cycle 5-like (S. pombe) (Cdc5l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IDA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62648969-S	ILMN_283122	ALG2	XM_001055088.1	XM_001055088.1		313231	109476479	XM_001055088.1	Alg2	XP_001055088.1	ILMN_1359991	0002120021	S	1316	CCAAACTGGTGTAGTCGGGAGAGTGTCAGGTAGGGTCTGTATGCCTCGTG				5q22	PREDICTED: Rattus norvegicus asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase) (Alg2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The chemical reactions and pathways resulting in the formation of dolichol-linked oligosaccharide, usually by a stepwise addition of glycosyl chains to endoplasmic reticulum membrane-bound dolichol-P [goid 6488] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dolichol-linked oligosaccharide, usually by a stepwise addition of glycosyl chains to endoplasmic reticulum membrane-bound dolichol-P [goid 6488] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The addition of a sugar unit to a protein amino acid in the endoplasmic reticulum [goid 33577] [evidence IEA]; The addition of a sugar unit to a protein amino acid in the endoplasmic reticulum [goid 33577] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence ISS]	Catalysis of the transfer of a mannose residue from GDP-mannose to an oligosaccharide, forming an alpha-1,3-linkage [goid 33] [evidence IEA]; Catalysis of the transfer of a mannose residue from GDP-mannose to an oligosaccharide, forming an alpha-1,3-linkage [goid 33] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with both a protein or protein complex and a membrane, in order to maintain the localization of the protein at a specific location on the membrane [goid 43495] [evidence IEA]; Interacting selectively with both a protein or protein complex and a membrane, in order to maintain the localization of the protein at a specific location on the membrane [goid 43495] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666664	ILMN_65980	LOC501533	XM_580208.1	XM_580208.1		501533	62666664	XM_580208.1	LOC501533	XP_580208.1	ILMN_1650494	0000840400	S	502	CCGGGACCAAAACCGCTTGAGGCTGCAGACCGAGAGTCCTCACCTTATCT					PREDICTED: Rattus norvegicus LOC501533 (LOC501533), mRNA.					
Rattus norvegicus	RefSeq	GI_21687011-A	ILMN_299078	CACNG5	NM_080693.1	NM_080693.1		140726	21687011	NM_080693.1	Cacng5	NP_542424.1	ILMN_1376283	0003190377	S	273	CAATGTTCTAAAAATGATTCGCTCGGCCACCCCGTTCCCACTGGTCAGCC	10	-	97306497-97306536:97307399-97307408	10q32.1	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 5 (Cacng5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31342646-S	ILMN_298474	VAC14	NM_177930.2	NM_177930.2		307842	31342646	NM_177930.2	Vac14	NP_808791.1	ILMN_1359871	0006760685	S	2998	GCACACAGGCCAGCACAAAGACCTCTACAGAATGATGTTCACCCCTGCCC	19	+	40639683-40639732	19q12	Rattus norvegicus Vac14 homolog (S. cerevisiae) (Vac14), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence NAS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	hydin	hydin
Rattus norvegicus	RefSeq	GI_34871907-S	ILMN_279979	RGD1566086_PREDICTED	XM_001077899.1	XM_001077899.1		360795	109497225	XM_001077899.1	RGD1566086_predicted	XP_001077899.1	ILMN_1367294	0005700008	S	466	GACAATTACAGCCTTGCCACCCTGAAGTGGATCCTGGAGAACAGAGCCGG				12q12	PREDICTED: Rattus norvegicus similar to gtf2ird2 (predicted) (RGD1566086_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658768-S	ILMN_279979	RGD1566086_PREDICTED	XM_001077899.1	XM_001077899.1		360795	109497225	XM_001077899.1	RGD1566086_predicted	XP_001077899.1	ILMN_1371284	0001410053	S	1113	GCAAGAACGTCGCAGGACACAGTGCTTTGTGTAGTGAGTGTCCTGGAGGG				12q12	PREDICTED: Rattus norvegicus similar to gtf2ird2 (predicted) (RGD1566086_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657674-S	ILMN_291242	DSCR6_PREDICTED	XM_001055140.1	XM_001055140.1		288239	109494065	XM_001055140.1	Dscr6_predicted	XP_001055140.1	ILMN_1359522	0002570441	S	850	GGAGCTCACTGCCACTCTGAATGTTACTCATCCGTAAGTCTCACCACCCC				11q11	PREDICTED: Rattus norvegicus Down syndrome critical region homolog 6 (human) (predicted) (Dscr6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873573-S	ILMN_65189	RGD1564391_PREDICTED	XM_346945.2	XM_346945.2		361199	109504578	XM_346945.2	RGD1564391_predicted	XP_346946.1	ILMN_1351817	0000460148	S	225	CGGCATTGATGACTCCGTTTCCCCCAGCACGAGGGTGAAGAAGACCAGCA	17	-	7758328-7758377	17p14	PREDICTED: Rattus norvegicus RGD1564391 (predicted) (RGD1564391_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639613-S	ILMN_267791	KLK14_PREDICTED	XM_001080394.1	XM_001080394.1		308562	109461826	XM_001080394.1	Klk14_predicted	XP_001080394.1	ILMN_1363897	0006980458	S	763	TGCCATCGAGCCTACCCTGGAACCATAACCTCTGGCATGGTCTGTGCCGG				1q22	PREDICTED: Rattus norvegicus kallikrein 14 (predicted) (Klk14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662638-S	ILMN_295597	AGA	NM_001031641.1	NM_001031641.1		290923	72255512	NM_001031641.1	Aga	NP_001026811.1	ILMN_1371546	0002640035	S	1072	TTAAAGAGGAAAGACGTGACGGCGGGAAGGTTGCTCACTGACATGGAGTG	16	-	41383596-41383645	16p11	Rattus norvegicus aspartylglucosaminidase (Aga), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process leading to the attainment of the full functional capacity of a protein [goid 51604] [evidence ISS]	Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H2O = N-acetyl-beta-glucosaminylamine + L-aspartate [goid 3948] [evidence ISS]; Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H2O = N-acetyl-beta-glucosaminylamine + L-aspartate [goid 3948] [evidence IEA]; Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H2O = N-acetyl-beta-glucosaminylamine + L-aspartate [goid 3948] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]	MGC112709	MGC112709
Rattus norvegicus	RefSeq	GI_62656758-S	ILMN_66981	RGD1562411_PREDICTED	XM_340875.3	XM_340875.3		360595	109488768	XM_340875.3	RGD1562411_predicted	XP_340876.3	ILMN_1365772	0004540039	S	950	CACGACCAAGTTATGGAGTGCCTGCCAGCAAGAGACAGTGTTCGGATATG	10	+	76648365-76648372:76650101-76650142	10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610013E23 (predicted) (RGD1562411_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506906-S	ILMN_286219	MSTN	NM_019151.1	NM_019151.1		29152	9506906	NM_019151.1	Mstn	NP_062024.1	ILMN_1354637	0003850403	S	794	CCCGGAGAGACTTTGGGCTTGACTGTGATGAACACTCCACGGAATCGCGG	9	-	45427118-45427167	9q22	Rattus norvegicus myostatin (Mstn), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle growth [goid 48632] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Mstn	Mstn
Rattus norvegicus	RefSeq	GI_62661247-S	ILMN_69531	RGD1563144_PREDICTED	XM_573746.2	XM_573746.2		498486	109501517	XM_573746.2	RGD1563144_predicted	XP_573746.2	ILMN_1374581	0004810048	S	1300	ACGAGAGGATGCCTGTGGCTGCTGGGAGTGCAAATGATCAGAAAGGGGGG	15	-	21273003-21273052	15p14	PREDICTED: Rattus norvegicus similar to EMeg32 protein (predicted) (RGD1563144_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51854214-S	ILMN_286823	RNF34	NM_001004075.1	NM_001004075.1		282845	51854214	NM_001004075.1	Rnf34	NP_001004075.1	ILMN_1373101	0001660592	S	1579	TCACTGTTCGTGACTGGGCTAGTGTGGGCTCTCCTGAGCCGTAGCTGCTC	12	-	34805468-34805517	12q16	Rattus norvegicus ring finger protein 34 (Rnf34), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93980; Momo	MGC93980; Momo
Rattus norvegicus	RefSeq	GI_62662555-S	ILMN_58060	LOC502073	XM_577507.1	XM_577507.1		502073	62662555	XM_577507.1	LOC502073	XP_577507.1	ILMN_1366900	0005900446	S	159	GGACAGGTACAGGCTATGACACATATGGCGGTCAATCTTCTTGGATTCGC					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC502073), mRNA.					
Rattus norvegicus	RefSeq	GI_13928775-S	ILMN_288575	PHKG1	NM_031573.1	NM_031573.1		29353	13928775	NM_031573.1	Phkg1	NP_113761.1	ILMN_1361748	0000130008	S	1031	TACTACCAGTACCGTCGGGTGAAGCCGGTAACCAGGGAGATCGTCATCCG	12	-	28029916-28029965	12q13	Rattus norvegicus phosphorylase kinase gamma 1 (Phkg1), mRNA.	An enzyme complex that catalyzes the phosphorylation of phosphorylase b to form phosphorylase a [goid 5964] [evidence TAS]	The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: 4 ATP + 2 phosphorylase b = 4 ADP + phosphorylase a [goid 4689] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Phkg; PHKIN01	Phkg; PHKIN01
Rattus norvegicus	RefSeq	GI_62645018-S	ILMN_60604	LOC311908	XM_231245.3	XM_231245.3		311908	62645018	XM_231245.3	LOC311908	XP_231245.3	ILMN_1349501	0006380537	S	1131	GAAAGCAATGTCAGACGCCGCAGGCCCCAGGAAATCTATGCAGAATCGCC				3q11	PREDICTED: Rattus norvegicus similar to PNAS-137 (LOC311908), mRNA.					
Rattus norvegicus	RefSeq	GI_16758249-S	ILMN_267109	CNGA3	NM_053495.1	NM_053495.1		85257	16758249	NM_053495.1	Cnga3	NP_445947.1	ILMN_1358426	0006110037	S	1993	TCCTCACCTAGGAAATGGGACTCATGCCTGCCAACCCCATGAAGTTCCAG	9	+	36202951-36203000	9q21	Rattus norvegicus cyclic nucleotide gated channel alpha 3 (Cnga3), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids [goid 31960] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus [goid 32026] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence NAS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a cation by a channel that opens when intracellular cyclic nucleotide has been bound by the channel complex or one of its constituent parts [goid 5221] [evidence ISS]; Catalysis of the transmembrane transfer of a cation by a channel that opens when intracellular cyclic nucleotide has been bound by the channel complex or one of its constituent parts [goid 5221] [evidence IDA]; Catalysis of the transmembrane transfer of a cation by a channel that opens when intracellular cGMP has been bound by the channel complex or one of its constituent parts [goid 5223] [evidence NAS]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate) [goid 30553] [evidence NAS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652788	ILMN_267399	SLC25A17_PREDICTED	XM_001076461.1	XM_001076461.1		300083	109482513	XM_001076461.1	Slc25a17_predicted	XP_001076461.1	ILMN_1651025	0005080519	S	1108	CTGTCATTGGCTGTAAAGGCATGGAAGGCTAAACAGGGAGTACAGCCAGC				7q34	PREDICTED: Rattus norvegicus solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17 (predicted) (Slc25a17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575916	ILMN_289753	OLR1470	NM_001000723.1	NM_001000723.1		404975	47575916	NM_001000723.1	Olr1470	NP_001000723.1	ILMN_1650954	0000940403	S	522	CCCTCACTATTTCTGTGATATGTCTACTCTGCTGAAAGTGGCTTGTTCTG	10	-	60295318-60295367	10q24	Rattus norvegicus olfactory receptor 1470 (Olr1470), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981589-S	ILMN_292262	IL1RL1	NM_013037.1	NM_013037.1		25556	6981589	NM_013037.1	Il1rl1	NP_037169.1	ILMN_1369374	0002970324	S	2208	TAGGCATCCACCCCTTATAATGCTGTTACCCAGGGTGACTGTGGACCACA	9	+	39616944-39616993	9q21	Rattus norvegicus interleukin 1 receptor-like 1 (Il1rl1), transcript variant 1, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43124] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Interacting selectively with interleukin-33 [goid 2113] [evidence ISS]; Combining with interleukin-33 to initiate a change in cell activity [goid 2114] [evidence ISS]; Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response [goid 4908] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response [goid 4908] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	FIT1; Fit-1; St2	FIT1; Fit-1; St2
Rattus norvegicus	RefSeq	GI_62655600-S	ILMN_61353	LOC501671	XM_577068.1	XM_577068.1		501671	62655600	XM_577068.1	LOC501671	XP_577068.1	ILMN_1360928	0000060647	S	229	TCTAGGACTTTGGCCTGGGACACTCACCAGAATTGCCACTGGTTGTGCAG					PREDICTED: Rattus norvegicus similar to Abcc6 protein (LOC501671), mRNA.					
Rattus norvegicus	RefSeq	GI_62642553-S	ILMN_69923	RGD1562953_PREDICTED	XM_574700.2	XM_574700.2		499382	109460313	XM_574700.2	RGD1562953_predicted	XP_574700.1	ILMN_1374977	0005890672	S	546	AAGATGGGGGTGCCCTACCTCATCATCAAGGGAAAGACCAGGCTGGGGCA	1	+	267292209-267292258	1q55	PREDICTED: Rattus norvegicus similar to Rpl7a protein (predicted) (RGD1562953_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639823-S	ILMN_66575	LOC499160	XM_574458.1	XM_574458.1		499160	62639823	XM_574458.1	LOC499160	XP_574458.1	ILMN_1370476	0006400390	S	814	CTCTGTAGCCATTGGCAAAGCTTATGGACTTCCTGCTCCTCAGGACACCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499160), mRNA.					
Rattus norvegicus	RefSeq	GI_62652161-S	ILMN_55285	LOC314782	XM_235089.2	XM_235089.2		314782	62652161	XM_235089.2	LOC314782	XP_235089.2	ILMN_1371700	0004210156	S	68	CAAAGAATGGCTGCACACAAAAAATGGAGAGGGGAGTCGAGCCCTGCGCT				7q13	PREDICTED: Rattus norvegicus similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin) (LOC314782), mRNA.					
Rattus norvegicus	RefSeq	GI_62639644-S	ILMN_270300	ACPT_PREDICTED	XM_001080560.1	XM_001080560.1		308569	109461858	XM_001080560.1	Acpt_predicted	XP_001080560.1	ILMN_1351102	0006450066	S	913	AACACCCCACCTTATGCTGCCTGCATGGCCTTTGAATTCCGGGGGAGCTC				1q22	PREDICTED: Rattus norvegicus acid phosphatase, testicular (predicted) (Acpt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647627-S	ILMN_52452	DNAH6	XM_342709.3	XM_342709.3		117250	109472191	XM_342709.3	Dnah6	XP_342710.3	ILMN_1358386	0000050647	S	436	CTGCCACGCACGAGTATTGGAAGGAGAGGGCTCTTTGGAATGAGGTCTTC	4	-	106537633-106537682	4q33	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 6 (Dnah6), mRNA.					
Rattus norvegicus	RefSeq	GI_62650500-A	ILMN_264877	LPIN1	NM_001012111.1	NM_001012111.1		313977	58865791	NM_001012111.1	Lpin1	NP_001012111.1	ILMN_1376971	0006380195	S	2993	GAGCCACTGCCACCCTTTGAAAACCAGGACGTGCATTCAGCCTCAGCTTG				6q15	Rattus norvegicus lipin 1 (Lpin1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell [goid 31529] [evidence ISS]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IDA]; Any process that modulates the frequency, rate or extent of adipocyte differentiation [goid 45598] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13591992-S	ILMN_285802	MMP9	NM_031055.1	NM_031055.1		81687	13591992	NM_031055.1	Mmp9	NP_112317.1	ILMN_2039240	0005310379	S	2827	CAGACTCCACTCTGGAGAATCCAACCCACTCACAGGGGAAACAGCCCGTT	3	+	155993275-155993324	3q42	Rattus norvegicus matrix metallopeptidase 9 (Mmp9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that activates or increases the frequency, rate, or extent of leukocyte migration [goid 2687] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence ISS]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]; A process that increases synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 31915] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus [goid 33189] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IDA]	Interacting selectively with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids [goid 1968] [evidence IPI]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence TAS]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577012-S	ILMN_302882	OLR281	NM_001000225.1	NM_001000225.1		293425	47577012	NM_001000225.1	Olr281	NP_001000225.1	ILMN_1368045	0006550278	S	241	ATACTTGTGGTCCTGACTAGTGAGAAAGCTACTATCACCTTTGGGGGCTG	1	+	166471804-166471853	1q33	Rattus norvegicus olfactory receptor 281 (Olr281), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr281	Olr281
Rattus norvegicus	RefSeq	GI_62079066-S	ILMN_287095	RGD1309804	NM_001014167.1	NM_001014167.1		361751	62079066	NM_001014167.1	RGD1309804	NP_001014189.1	ILMN_1353510	0006940592	S	1526	GCAGGGCAAAGAAGTCCACCATTACCCCCTCAGGAAGATGGGAGTCAACC	1	-	237364797-237364846	1q52	Rattus norvegicus similar to hypothetical protein FLJ11218 (RGD1309804), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865917-A	ILMN_284407	TRUB1	NM_001012173.1	NM_001012173.1		361775	58865917	NM_001012173.1	Trub1	NP_001012173.1	ILMN_1376771	0003830520	S	1374	TGTGTTTGCAGAGCTGTGGCTGCTGGGAAGCGCTGGTGGGCTGAAGTCAT	1	+	263813171-263813220	1q55	Rattus norvegicus TruB pseudouridine (psi) synthase homolog 1 (E. coli) (Trub1), mRNA.		The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]; The intramolecular conversion of uridine to pseudouridine in a tRNA molecule [goid 31119] [evidence IEA]	Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5 [goid 9982] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981155-S	ILMN_283129	LGALS9	NM_012977.1	NM_012977.1		25476	6981155	NM_012977.1	Lgals9	NP_037109.1	ILMN_1351604	0002060722	S	593	CCCTGGACAGATGCTCTCTACTCCTGGAATCCCTCCTATGGCATACCCCA	10	-	65131970-65131971:65132811-65132852:65133445-65133450	10q25	Rattus norvegicus lectin, galactose binding, soluble 9 (Lgals9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865359-A	ILMN_272792	TRMT2A	NM_001011895.1	NM_001011895.1		287953	58865359	NM_001011895.1	Trmt2a	NP_001011895.1	ILMN_1376400	0001850176	S	2037	GAAATCTTCCCGACCTCACTGCACAGGAAACAGAGACTTCCCTCTCACCC	11	-	84731644-84731693	11q23	Rattus norvegicus TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) (Trmt2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639312-S	ILMN_290018	NEUD4	XM_001075457.1	XM_001075457.1		50545	109461601	XM_001075457.1	Neud4	XP_001075457.1	ILMN_1371630	0006860575	S	2382	AGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGG				1q21	PREDICTED: Rattus norvegicus neuronal d4 domain family member (Neud4), mRNA.					
Rattus norvegicus	RefSeq	GI_62657456-S	ILMN_282693	LOC688296	XM_001081771.1	XM_001081771.1		688296	109492350	XM_001081771.1	LOC688296	XP_001081771.1	ILMN_1359778	0001500025	S	4328	AGCTCCATGAGATGATTGTGCTCAAACTCAGGGGTGCCCAGGCTGAGAGC					PREDICTED: Rattus norvegicus similar to chromosome 17 open reading frame 27 (LOC688296), mRNA.					
Rattus norvegicus	RefSeq	GI_21728413-S	ILMN_296953	PTPN7	NM_145683.1	NM_145683.1		246781	21728413	NM_145683.1	Ptpn7	NP_663716.1	ILMN_1358200	0003610162	S	1688	CTTGCCCACACACAGGCCAGATGCAAGCGCAGGGAAAATCCCAGTCTGAC	13	+	48105363-48105412	13q13	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 7 (Ptpn7), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Lcptp; Heptp	Lcptp; Heptp
Rattus norvegicus	RefSeq	GI_34864284-S	ILMN_265835	FERD3L_PREDICTED	XM_345658.1	XM_345658.1		366598	34864284	XM_345658.1	Ferd3l_predicted	XP_345659.1	ILMN_1359495	0000380411	S	150	GGGGCTGTTGCAGTTTGAGGGAAGATACCAGGAAGTAGAGGGGGGAGAAG	6	+	52576541-52576590	6q16	PREDICTED: Rattus norvegicus Fer3-like (Drosophila) (predicted) (Ferd3l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642041-S	ILMN_265637	PTAR1	XM_001079969.1	XM_001079969.1		286972	109463717	XM_001079969.1	Ptar1	XP_001079969.1	ILMN_2039020	0002190162	S	848	GCCCAGTGTGAGTCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCA				1q51	PREDICTED: Rattus norvegicus protein prenyltransferase alpha subunit repeat containing 1, transcript variant 2 (Ptar1), mRNA.					
Rattus norvegicus	RefSeq	GI_47576824-S	ILMN_285398	OLR200	NM_001000189.1	NM_001000189.1		293340	47576824	NM_001000189.1	Olr200	NP_001000189.1	ILMN_1350978	0000360072	S	726	GGCCCTCAGTACCTGCAGCTCCCACCTCATTCTCATTTTGTTTTACTACC	1	+	163043468-163043517	1q33	Rattus norvegicus olfactory receptor 200 (Olr200), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-163138220-163139185_ORF; Olr200	ratchr1-163138220-163139185_ORF; Olr200
Rattus norvegicus	RefSeq	GI_62658958-S	ILMN_299821	LOC498184	NM_001037361.1	NM_001037361.1		498184	82654221	NM_001037361.1	LOC498184	NP_001032438.1	ILMN_1356372	0006350372	S	1515	GCCGAGAGCGAGATCAATTCCAAGAAGCGCGTAGAGGCAGAGCGCGAGAT	12	-	37123636-37123685	12q16	Rattus norvegicus similar to IQ motif containing D (LOC498184), mRNA.					
Rattus norvegicus	RefSeq	GI_34879171	ILMN_54127	LOC502094	XM_344535.1	XM_344535.1		502094	34879171	XM_344535.1	LOC502094	XP_344536.1	ILMN_1650945	0006200092	S	17	CCCCAGAGGACTTCGAAAGGTGTGGGGCGGAGTCGGATGTGGTCAGACTA					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S28 (LOC502094), mRNA.					
Rattus norvegicus	RefSeq	GI_47577996-S	ILMN_285715	OLR1081	NM_001000592.1	NM_001000592.1		366834	47577996	NM_001000592.1	Olr1081	NP_001000592.1	ILMN_1374524	0003390458	S	803	GCTCAAATTCTGCTGCAAGTGCTTCGGTCATGTATACTATGGTCACTCCC	7	-	12171167-12171216	7q11	Rattus norvegicus olfactory receptor 1081 (Olr1081), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1081	Olr1081
Rattus norvegicus	RefSeq	GI_62653498-S	ILMN_284774	RGD1564160_PREDICTED	XM_001061125.1	XM_001061125.1		500973	109484513	XM_001061125.1	RGD1564160_predicted	XP_001061125.1	ILMN_1373451	0002940021	S	2568	ACTCCCGGCATTTCCGCCTGACCTCTAAGCTGCCCATCAGCACCAACACA				8q21	PREDICTED: Rattus norvegicus similar to solute carrier family 37 (glycerol-3-phosphate transporter), member 2 (predicted) (RGD1564160_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978698-S	ILMN_283990	CPD	XM_001080770.1	XM_001080770.1		25306	109491350	XM_001080770.1	Cpd	XP_001080770.1	ILMN_1362981	0003060398	S	3877	CTGCTCTATCAAGTCTAACAGACACAAAGATGGCTTCCACCGGCTGCGGC				10q26	PREDICTED: Rattus norvegicus carboxypeptidase D (Cpd), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IPI]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IPI]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IPI]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 11181555] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4185] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664167-S	ILMN_68158	RGD1561153_PREDICTED	XM_574117.2	XM_574117.2		498834	109506409	XM_574117.2	RGD1561153_predicted	XP_574117.2	ILMN_1352214	0005860193	S	6220	GGGTTACTGCTCATCCACCCCAAGACCAAGGAACTGCTGGACACCTTCCC	18	-	24387287-24387307:24387427-24387455	18p12	PREDICTED: Rattus norvegicus similar to myosin-VIIb (predicted) (RGD1561153_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661376-S	ILMN_280705	CTSB	NM_022597.2	NM_022597.2		64529	82830419	NM_022597.2	Ctsb	NP_072119.2	ILMN_1376513	0000770196	S	1559	CACTTCTAGGACTGTGGCAGGCTTTGATGGCCCAATGCAGTTCTCTGGAG	15	+	42423317-42423366	15p12	Rattus norvegicus cathepsin B (Ctsb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence TAS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; Any process that modulates the activity of an enzyme [goid 50790] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that modulates the activity of an enzyme [goid 50790] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IMP]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a kininogen, any of a group of plasma proteins that are kinin precursors [goid 30984] [evidence IPI]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643644-S	ILMN_268274	RGD1559622_PREDICTED	XM_001061908.1	XM_001061908.1		295071	109466704	XM_001061908.1	RGD1559622_predicted	XP_001061908.1	ILMN_1371328	0004210672	S	1135	ATGGAGGAAGGAATTCATGGAGCTCTATCCTTCACTATGGGTGCCGTGGC				2q31	PREDICTED: Rattus norvegicus similar to hypothetical protein C130079G13 (predicted) (RGD1559622_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654964-S	ILMN_265554	RGD1562212_PREDICTED	XM_001059451.1	XM_001059451.1		316356	109487034	XM_001059451.1	RGD1562212_predicted	XP_001059451.1	ILMN_1365814	0005860239	S	1395	ACAGACCTCCCTTCAGTGGGGATGGGAGCGAGAGACTCAAACGGGAGTAG				9q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931419K03 (predicted) (RGD1562212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663019-S	ILMN_295991	LOC364647	XR_009128.1	XR_009128.1		364647	109504517	XR_009128.1	LOC364647		ILMN_1354475	0006510333	S	118	GTTGTGCTTCTGGTAGACTTGTTGAAGGATGAAGCCACCCTAGACCAGTG				16q12.5	PREDICTED: Rattus norvegicus similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed (LOC364647), mRNA.					
Rattus norvegicus	RefSeq	GI_62641373-S	ILMN_283896	SEC23IP	XM_001080456.1	XM_001080456.1		309010	109462957	XM_001080456.1	Sec23ip	XP_001080456.1	ILMN_1359251	0005290538	S	2940	AGGATGAGGACTACTTAGGAAAGGTTGGGATGTTAAATGGAGGCCGCCGG				1q37	PREDICTED: Rattus norvegicus SEC23 interacting protein (Sec23ip), mRNA.			Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660583-S	ILMN_269761	RGD1564950_PREDICTED	XM_001058964.1	XM_001058964.1		289671	109500712	XM_001058964.1	RGD1564950_predicted	XP_001058964.1	ILMN_1369648	0000670066	S	2901	GAGGAAGTACCCAGCCGAGTGGTCAGTGTGCCAAACCTTGCCTCCTATGC				14q21	PREDICTED: Rattus norvegicus similar to Hypothetical protein, MNCb-2622 (predicted) (RGD1564950_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641294-S	ILMN_278594	RGD1560566_PREDICTED	XM_001080074.1	XM_001080074.1		308986	109462894	XM_001080074.1	RGD1560566_predicted	XP_001080074.1	ILMN_1363466	0007000594	S	860	GAGCACGGCTTTGAGGTTGACGGACTGTGCCTTACTCTGCTGTCAGGTAC				1q36	PREDICTED: Rattus norvegicus RGD1560566 (predicted) (RGD1560566_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506886-S	ILMN_299869	TPSB2	NM_019180.1	NM_019180.1		29268	9506886	NM_019180.1	Tpsb2	NP_062053.1	ILMN_1374231	0004230333	S	838	TCAGCGTTCCTGAGACCCATCCAGGGTCAGGGAAGAACCAGGCACCTGCT	10	+	14614660-14614671:14614672-14614709	10q12	Rattus norvegicus tryptase beta 2 (Tpsb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644486-S	ILMN_281496	RGD1560801_PREDICTED	XR_009267.1	XR_009267.1		288456	109467743	XR_009267.1	RGD1560801_predicted		ILMN_1370813	0004570324	S	2384	ACAGAGAAAGAATCTTGCAATTGGAATCTGCGCGAGCTGAGGACTCAGAG				2q44	PREDICTED: Rattus norvegicus similar to guanylate binding protein 1, interferon-inducible, 67kDa (predicted) (RGD1560801_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640981-A	ILMN_290100	CLPB	NM_022947.1	NM_022947.1		65041	12621117	NM_022947.1	Clpb	NP_075236.1	ILMN_1376393	0003870687	S	1957	TCGCCCCAGGCTGAAAAGCGTCCGCCTACACTGCGACTGGAGATCATTGA				1q32	Rattus norvegicus ClpB caseinolytic peptidase B homolog (E. coli) (Clpb), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	Skd3	Skd3
Rattus norvegicus	RefSeq	GI_62652337-S	ILMN_64281	DD5	XM_576252.2	XM_576252.2		117060	109480711	XM_576252.2	Dd5	XP_576252.2	ILMN_2040780	0006450367	S	8194	CAGCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCC	7	-	73468208-73468257	7q22	PREDICTED: Rattus norvegicus progestin induced protein (Dd5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence TAS]; Any series of molecular signals generated as a consequence of a progesterone binding to its receptor [goid 50847] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence TAS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648490-S	ILMN_49036	LOC500380	XM_575738.1	XM_575738.1		500380	62648490	XM_575738.1	LOC500380	XP_575738.1	ILMN_1355226	0001170088	S	231	AGGGGCGGCACAGGTCTTCCTGGTTGCTGCCGCTGCAGAGAGCCCCTGGA					PREDICTED: Rattus norvegicus similar to LRRGT00008 (LOC500380), mRNA.					
Rattus norvegicus	RefSeq	GI_46485725-S	ILMN_287171	HYAL1	NM_207616.1	NM_207616.1		367166	46485725	NM_207616.1	Hyal1	NP_997499.1	ILMN_1373594	0000050722	S	979	GCCCAGGGAGCGGCAGGAGCAGTGCTCTGGATAAGCTCAGAAAAAACAAG	8	+	112826373-112826422	8q32	Rattus norvegicus hyaluronoglucosaminidase 1 (Hyal1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence TAS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine [goid 30214] [evidence IDA]	Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence TAS]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IDA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649567-S	ILMN_58754	CTPS_PREDICTED	XM_233467.4	XM_233467.4		313560	109475424	XM_233467.4	Ctps_predicted	XP_233467.4	ILMN_1375135	0006520088	S	2972	CCCTCACCATCCAGAGGGCTGTTTGGTTCTTTGGCACATCAGGCAAGCTG	5	-	141136992-141137041	5q36	PREDICTED: Rattus norvegicus cytidine 5'-triphosphate synthase (predicted) (Ctps_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641452	ILMN_270147	LOC687581	XM_001079239.1	XM_001079239.1		687581	109462793	XM_001079239.1	LOC687581	XP_001079239.1	ILMN_1650873	0003610053	S	934	GCAGCGCTACATCAGAGAACGGGAGCTCAGCAAGACTCTATCCCATACGC					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC687581), mRNA.					
Rattus norvegicus	RefSeq	GI_62718350-S	ILMN_55088	LOC501376	XM_576789.1	XM_576789.1		501376	62718350	XM_576789.1	LOC501376	XP_576789.1	ILMN_1354000	0006200156	S	113	CTGGGGAATGATGAATGCTGGGAGAGAAACATCTTCCCCTGAAACTGCCC					PREDICTED: Rattus norvegicus LOC501376 (LOC501376), mRNA.					
Rattus norvegicus	RefSeq	GI_62648079-S	ILMN_51153	RGD1563660_PREDICTED	XM_232316.4	XM_232316.4		297554	109472543	XM_232316.4	RGD1563660_predicted	XP_232316.3	ILMN_1353105	0007040397	S	1801	CCTGGCCTTTTCCACCTCTGGCATGAGAAACACTGTGCGGACGAGCTGAC	4	-	154401631-154401680	4q42	PREDICTED: Rattus norvegicus similar to chondroitin sulfate GalNAcT-2 (predicted) (RGD1563660_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659913	ILMN_55304	LYPLAL1_PREDICTED	XM_213970.4	XM_213970.4		289357	109498345	XM_213970.4	Lyplal1_predicted	XP_213970.4	ILMN_1649832	0002320408	S	999	CATTCCAGGCAGCAGTGTGGTGGCTCTTGATGCCGAGTTCTGCCCGACTT	13	-	102143522-102143571	13q26	PREDICTED: Rattus norvegicus lysophospholipase-like 1 (predicted) (Lyplal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758087-S	ILMN_66470	ATOX1	NM_053359.2	NM_053359.2		84355	84039698	NM_053359.2	Atox1	NP_445811.1	ILMN_1353644	0004010133	S	343	GAGGCAGACTGTTGATCTGGTCTCCCCCGCTGATCTGGAACACCAACTGC	10	-	40858290-40858333:40861408-40861413	10q22	Rattus norvegicus ATX1 antioxidant protein 1 homolog (yeast) (Atox1), mRNA.		The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence ISS]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence IEA]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IEA]; Assists in the delivery of copper ions to target proteins or compartments [goid 16531] [evidence ISS]; Assists in the delivery of copper ions to target proteins or compartments [goid 16531] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of copper [goid 32767] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of copper [goid 32767] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Atx1	Atx1
Rattus norvegicus	RefSeq	GI_19173779-S	ILMN_270681	CLCC1	NM_133414.1	NM_133414.1		170927	19173779	NM_133414.1	Clcc1	NP_596905.1	ILMN_1350919	0001050398	S	3389	CGAGTGACTAGCGAGAGGAGCGAGCGTTTGTCTTGGAGGTTAAAGCCCAC	2	+	204278368-204278417	2q34	Rattus norvegicus chloride channel CLIC-like 1 (Clcc1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IMP]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IMP]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 11279057] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 11279057] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 11279057] [evidence NAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [pmid 11279057] [evidence IMP]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [pmid 11279057] [evidence IMP]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [pmid 11279057] [evidence IMP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [pmid 11279057] [evidence IDA]	Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IMP]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [pmid 11279057] [evidence IMP]	Mclc	Mclc
Rattus norvegicus	RefSeq	GI_8393489-S	ILMN_292416	GRM5	NM_017012.1	NM_017012.1		24418	8393489	NM_017012.1	Grm5	NP_058708.1	ILMN_1361607	0002810398	S	3839	GGGCGCAGCGACACCCATAGTCACCCCAACAGAGAACCCGAGGTGAAAAA	1	+	144477339-144477388	1q32	Rattus norvegicus glutamate receptor, metabotropic 5 (Grm5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [pmid 10936169] [evidence TAS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The series of molecular signals generated as a consequence of a metabotropic glutamate receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7206] [evidence TAS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of locomotion of a cell or organism [goid 40013] [evidence IDA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; A process that increases long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48170] [evidence IDA]; Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase [goid 185] [pmid 15758184] [evidence IDA]; The process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway [goid 2029] [pmid 12514208] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [pmid 15758184] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [pmid 12514208] [evidence IDA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [pmid 15758184] [evidence TAS]; The series of molecular signals generated as a consequence of a metabotropic glutamate receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7206] [pmid 12514208] [evidence TAS]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [pmid 15758184] [evidence TAS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [pmid 15758184] [evidence TAS]	A G-protein coupled receptor that binds glutamate and is linked to the inositol 1,4,5-trisphosphate/calcium signaling system [goid 1639] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an A2A adenosine receptor [goid 31687] [evidence IPI]; A G-protein coupled receptor that binds glutamate and is linked to the inositol 1,4,5-trisphosphate/calcium signaling system [goid 1639] [pmid 15758184] [evidence TAS]; A G-protein coupled receptor that binds glutamate and is linked to the inositol 1,4,5-trisphosphate/calcium signaling system [goid 1639] [pmid 12514208] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15758184] [evidence IPI];  [goid 5517] [pmid 12021391] [evidence TAS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 10936169] [evidence TAS]	mGluR5	mGluR5
Rattus norvegicus	RefSeq	GI_62648445-S	ILMN_68808	LOC502921	XM_578422.1	XM_578422.1		502921	62648445	XM_578422.1	LOC502921	XP_578422.1	ILMN_1350921	0006840670	S	2829	TCCCTGGAGCAACCATTCAGCGTGGACATAACCGTGGACTCACCCTCCCT					PREDICTED: Rattus norvegicus similar to trophinin isoform 2 (LOC502921), mRNA.					
Rattus norvegicus	RefSeq	GI_62649125-S	ILMN_300029	RGD1309148_PREDICTED	XM_001067663.1	XM_001067663.1		298147	109476667	XM_001067663.1	RGD1309148_predicted	XP_001067663.1	ILMN_1363624	0001050739	S	573	GCACACACTGCCAAGGATGCGCTTAACCATAGGACATACCGAGAAGACCG				5q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110001D03 (predicted) (RGD1309148_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663514-S	ILMN_59480	LOC364684	XM_344579.2	XM_344579.2		364684	62663514	XM_344579.2	LOC364684	XP_344580.2	ILMN_1374364	0003850020	S	262	CTGCTACGTCGTCCTCTGGGCTCTTGGCATCAAACTCTGGTTCAGGCACC					PREDICTED: Rattus norvegicus similar to jumonji protein (LOC364684), mRNA.					
Rattus norvegicus	RefSeq	GI_62645385-S	ILMN_271830	CUGBP1	NM_001025421.1	NM_001025421.1		362160	70794747	NM_001025421.1	Cugbp1	NP_001020592.1	ILMN_1369085	0000460110	S	1464	GAATGATAGTAAGCCCTACTGATCGTGCTCCCCTCTGAGACTGGAGTGAG	3	+	75374916-75374937:75374938-75374965	3q24	Rattus norvegicus CUG triplet repeat, RNA binding protein 1 (Cugbp1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the RNA element BRE (Bruno response element) [goid 42835] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656146-S	ILMN_50722	RGD1304587	XM_220532.4	XM_220532.4		303180	109488199	XM_220532.4	RGD1304587	XP_220532.2	ILMN_1371282	0003360152	S	951	GTGGCTACCAGCCCACTCCTACTTGCTAACTATCTCATCCCTATCTGGGA	10	+	45514722-45514771	10q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310033P09 (RGD1304587), mRNA.					
Rattus norvegicus	RefSeq	GI_62650638	ILMN_69691	RGD1560073_PREDICTED	XM_234077.3	XM_234077.3		314054	109478157	XM_234077.3	RGD1560073_predicted	XP_234077.1	ILMN_1650834	0003850102	S	283	ACTTCCGGAGATCGTGCCCGCCACCTTTAGTCTCAGCCATCCGGAGACCG	6	-	58773664-58773713	6q21	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1560073_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644802-S	ILMN_49589	ADAMTS13_PREDICTED	XM_342395.3	XM_342395.3		362091	109467943	XM_342395.3	Adamts13_predicted	XP_342396.3	ILMN_1360173	0001340164	S	4416	CCAGGTGCAGAAGGGCGGGGACTGGGAGTTGGAGATCAGAAAAGCAATCC	3	+	5907975-5908024	3p12	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 (predicted) (Adamts13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659406-S	ILMN_279982	LOC683258	XM_001065131.1	XM_001065131.1		683258	109498715	XM_001065131.1	LOC683258	XP_001065131.1	ILMN_1354981	0007050692	S	87	GAGGCGCAGACTGCTCATGGCCAAATGCATGATGCCGGTGTCGCTGATGT					PREDICTED: Rattus norvegicus similar to F-box and leucine-rich repeat protein 14 (LOC683258), mRNA.					
Rattus norvegicus	RefSeq	GI_62650936-S	ILMN_267011	RGD1559435_PREDICTED	XR_009570.1	XR_009570.1		366684	109515131	XR_009570.1	RGD1559435_predicted		ILMN_1350213	0004280537	S	654	GAAGTTTGCAACTGTCAGAGCTGCGGAGTTGACCGACAGAAATGAATGTC				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (predicted) (RGD1559435_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667092-S	ILMN_276598	MAGEE2_PREDICTED	XM_001056951.1	XM_001056951.1		302392	109512153	XM_001056951.1	Magee2_predicted	XP_001056951.1	ILMN_1375095	0002810541	S	1606	AGCTGCTCTGGGGTCCTCGGGCTCACCTTGAAATCACCAAAATGAAAGCC				Xq31	PREDICTED: Rattus norvegicus melanoma antigen, family E, 2 (predicted) (Magee2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742567-S	ILMN_284337	DPYSL3	NM_012934.1	NM_012934.1		25418	25742567	NM_012934.1	Dpysl3	NP_037066.1	ILMN_1374650	0003450091	S	1660	CCCACCAGTGAGGAACCTCCATCAGTCGGGATTTAGTCTGTCAGGCACCC	18	-	36620751-36620757:36622060-36622102	18p11	Rattus norvegicus dihydropyrimidinase-like 3 (Dpysl3), mRNA.	The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IPI]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IPI]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]	Interacting selectively with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues [goid 5539] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IDA]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]	Crmp4; TUC-4b	Crmp4; TUC-4b
Rattus norvegicus	RefSeq	GI_62648556-S	ILMN_287129	RGD1560290_PREDICTED	XM_001066932.1	XM_001066932.1		500394	109476057	XM_001066932.1	RGD1560290_predicted	XP_001066932.1	ILMN_1360543	0006400131	S	1689	CATGGAGTCAGATTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGC				5q11	PREDICTED: Rattus norvegicus similar to syntrophin, gamma 1 (predicted) (RGD1560290_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20301979-S	ILMN_265259	SFTPB	NM_138842.1	NM_138842.1		192155	20301979	NM_138842.1	Sftpb	NP_620197.1	ILMN_1353410	0005550397	S	1336	ACCAGAGCCAAGCCCAGCTCCAACAGCTCCTACAGCCCCAGGACTGAAAA	4	+	105618294-105618343	4q33	Rattus norvegicus surfactant associated protein B (Sftpb), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IEA]; Any process that modulates the surface tension of a liquid. Surface tension is the property that makes a liquid behave as if it had an elastic skin on its surface at the interface with a gas or an immiscible liquid [goid 50828] [evidence TAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Sp-b	Sp-b
Rattus norvegicus	RefSeq	GI_13591873-S	ILMN_265923	GNB1	NM_030987.1	NM_030987.1		24400	13591873	NM_030987.1	Gnb1	NP_112249.1	ILMN_1375069	0005910164	S	2594	GTGACTGTGCGGTAGGCCTGGACATGGCAAAGAGAATACAGCGAAGCCCC	5	+	172387979-172388028	5q36	Rattus norvegicus guanine nucleotide binding protein, beta 1 (Gnb1), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence ISS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IMP]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence ISS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IMP]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62650680-S	ILMN_48955	RGD1559672_PREDICTED	XM_576028.2	XM_576028.2		500650	109478216	XM_576028.2	RGD1559672_predicted	XP_576028.1	ILMN_1350582	0003990025	S	915	TTGCCCTCAGTGAGTGGAAGCCAAACCCTTGGTGGCTCACTGAGAATGTG	6	+	74670081-74670130	6q23	PREDICTED: Rattus norvegicus similar to Translocase of inner mitochondrial membrane 23 homolog (predicted) (RGD1559672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665380-S	ILMN_298373	LOC292069	NM_001037094.1	NM_001037094.1		292069	80861392	NM_001037094.1	LOC292069	NP_001032171.1	ILMN_1353625	0000460671	S	1543	GCTGAGCCATGTGAAGCCATGAAGCAAGAAGCTGAGGACAAAGGGATTGG	19	+	52770919-52770968	19q12	Rattus norvegicus similar to RIKEN cDNA 2310061F22 (LOC292069), mRNA.				MGC125094	MGC125094
Rattus norvegicus	RefSeq	GI_62663204-S	ILMN_291818	B4GALT7	NM_001031661.1	NM_001031661.1		364675	72255548	NM_001031661.1	B4galt7	NP_001026831.1	ILMN_1352727	0001050497	S	1223	GAGAGGCTGGAGCTGTGGCTCTTGACTGACCTTCTCTACCCTGCTTACCC	17	-	15060249-15060298	17p14	Rattus norvegicus xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) (B4galt7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars [goid 6024] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars [goid 6024] [evidence ISS]; The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans [goid 6029] [evidence ISS]; The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans [goid 6029] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of fibrils, extracellular matrix material consisting of polysaccharides and protein [goid 43206] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of fibrils, extracellular matrix material consisting of polysaccharides and protein [goid 43206] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence ISS]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: UDP-galactose + O-beta-D-xylosylprotein = UDP + 4-beta-D-galactosyl-O-beta-D-xylosylprotein [goid 46525] [evidence ISS]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence ISS]	MGC116242	MGC116242
Rattus norvegicus	RefSeq	GI_6978628-S	ILMN_298440	CD38	NM_013127.1	NM_013127.1		25668	6978628	NM_013127.1	Cd38	NP_037259.1	ILMN_1370878	0004060093	S	1839	CTTCTTCCTCATTCTTGGTGCCTTCTGTAGGTAGTCAGGAGTTAGCTTAC	14	-	72320837-72320886	14q21	Rattus norvegicus CD38 molecule (Cd38), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]	Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose [goid 3953] [evidence IDA]; Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose [goid 3953] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA];  [goid 16849] [evidence ISS];  [goid 16849] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11968123-S	ILMN_292482	TCN2	NM_022534.1	NM_022534.1		64365	11968123	NM_022534.1	Tcn2	NP_071979.1	ILMN_1355714	0005270039	S	1432	GGACCTAAGCCACTGTCCACCTTAGAGCAGGAAGGAAAACACCTCCTCCC	14	-	84579504-84579553	14q21	Rattus norvegicus transcobalamin 2 (Tcn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cobalt (Co) ions into, out of, within or between cells [goid 6824] [evidence IEA]; The directed movement of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom, into, out of or within a cell [goid 15889] [evidence TAS]; The directed movement of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom, into, out of or within a cell [goid 15889] [evidence IEA]	Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence IEA]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence IDA]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence IEA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]	Tcn2p; Tc2	Tcn2p; Tc2
Rattus norvegicus	RefSeq	GI_25742786-S	ILMN_268347	GABRA5	NM_017295.1	NM_017295.1		29707	25742786	NM_017295.1	Gabra5	NP_058991.1	ILMN_1372818	0002630008	S	2041	CCCTGTGATGACCACTTGACAGGTGAAAAAGCAAAGATCCTCGGGTACAC	1	-	108843575-108843624	1q22	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 5 (Gabra5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence TAS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660185-S	ILMN_52223	LOC364115	XM_577311.1	XM_577311.1		364115	62660185	XM_577311.1	LOC364115	XP_577311.1	ILMN_1374085	0003060167	S	2597	GCCTTGCTGGGCAGATGTGAACGTCGCTGGTCTGAAAGGAAGCAATAGCC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3a (V-fos transformation effector protein) (LOC364115), mRNA.					
Rattus norvegicus	RefSeq	GI_62644393-S	ILMN_272158	RGD1563706_PREDICTED	XM_001077244.1	XM_001077244.1		362042	109467651	XM_001077244.1	RGD1563706_predicted	XP_001077244.1	ILMN_1372584	0000050138	S	456	AGAGGCTGGGTTAAGCGAAGAGGAATATTTGTGCGAGGCTTCTGACGCAC				2q43	PREDICTED: Rattus norvegicus similar to Zgc:92184 (predicted) (RGD1563706_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948513-A	ILMN_299278	ZFP403	XM_001081060.1	XM_001081060.1		360584	109491541	XM_001081060.1	Zfp403	XP_001081060.1	ILMN_1376892	0003290400	S	2264	GGGAGACGGTGGAGGTAACCTCATTCGTTTGTTCTTTCTTCAGGCTTGTG				10q26	PREDICTED: Rattus norvegicus zinc finger protein 403, transcript variant 1 (Zfp403), mRNA.					
Rattus norvegicus	RefSeq	GI_31560861-S	ILMN_269027	DBI	NM_031853.3	NM_031853.3		25045	31560861	NM_031853.3	Dbi	NP_114054.1	ILMN_1354106	0003780273	S	476	GGCTCTGATATGTTAGGGCCAGAGTTAATTACTGCTCCTCCTTCCTTTGG	Un|NW_047910.1	+	281953-282002		Rattus norvegicus diazepam binding inhibitor (Dbi), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence TAS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]	Acoabp3; ACBP	Acoabp3; ACBP
Rattus norvegicus	RefSeq	GI_21728403-S	ILMN_287403	CBY1	NM_145676.1	NM_145676.1		246768	21728403	NM_145676.1	Cby1	NP_663709.1	ILMN_1350088	0002470347	S	261	AGTGGGTGGCAGACTCAGTGATTAGTGGGGGTGTGGACCGGAGGGAAACT	7	+	117907720-117907724:117907803-117907847	7q34	Rattus norvegicus chibby homolog 1 (Drosophila) (Cby1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence ISS]	Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658098-S	ILMN_48300	LOC363787	XM_577183.1	XM_577183.1		363787	62658098	XM_577183.1	LOC363787	XP_577183.1	ILMN_1368680	0000630278	S	130	AGGGGAGGAGCGGAGGAACAGGGTCTGAGGGCGGCAGTGAGTATGACCAT					PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (38 kDa BFA-dependent ADP-ribosylation substrate) (BARS-38) (LOC363787), mRNA.					
Rattus norvegicus	RefSeq	GI_47576998-S	ILMN_281381	OLR276	NM_001000227.1	NM_001000227.1		293431	47576998	NM_001000227.1	Olr276	NP_001000227.1	ILMN_1351208	0002030593	S	680	CCGTCTTGAAGATGCACTCCACCGAAGGTCGACACAAGGCTTTCTCTACA	1	+	166084438-166084487	1q33	Rattus norvegicus olfactory receptor 276 (Olr276), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr276	Olr276
Rattus norvegicus	RefSeq	GI_62662740-S	ILMN_262729	LOC682767	XM_001063007.1	XM_001063007.1		682767	109504212	XM_001063007.1	LOC682767	XP_001063007.1	ILMN_1371390	0001580164	S	1803	CATAGATGACTTTGGAGCAGTGAGCGATGGCACAGTTTGTGCTCCAGACT					PREDICTED: Rattus norvegicus similar to a disintegrin and metalloprotease domain 34 (LOC682767), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665676-A	ILMN_280825	AA926063	NR_002156.1	NR_002156.1		294284	50727968	NR_002156.1	AA926063		ILMN_1376898	0000770239	S	276	AAGCACTGCCTTCCATACAGTCAAGACGACCCTCGGTGGAACAGGGGCCA	20	-	5128310-5128359	20p12	Rattus norvegicus AA926063gene (AA926063), non-coding RNA.					
Rattus norvegicus	RefSeq	GI_62655781-S	ILMN_54111	LOC497664	XM_579443.1	XM_579443.1		497664	62655781	XM_579443.1	LOC497664	XP_579443.1	ILMN_1368027	0001660575	S	8079	GCTCAGCATACGCTACGGCCTCACCCCCGACACGCTGGATGAAGAGAAGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_020088 (LOC497664), mRNA.					
Rattus norvegicus	RefSeq	GI_40254760-S	ILMN_283999	FGR	NM_024145.2	NM_024145.2		79113	40254760	NM_024145.2	Fgr	NP_077059.2	ILMN_1375025	0006200056	S	2320	CTGAGGTTCTCTTGGGTTTCTCTACGTTACAAAGGCAGGGGACGTCTCTG	5	-	152119584-152119633	5q36	Rattus norvegicus Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog (Fgr), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660752-S	ILMN_285445	LOC685462	XM_001063886.1	XM_001063886.1		685462	109499986	XM_001063886.1	LOC685462	XP_001063886.1	ILMN_1349923	0006420333	S	666	CCTTCGAGGCAAGAGGGGAGGACACCCAACCAACTACCAGATCATCACCC	14	-	85766035-85766084	14q21	PREDICTED: Rattus norvegicus similar to EMI domain containing 1 (LOC685462), mRNA.					
Rattus norvegicus	RefSeq	GI_62660375-S	ILMN_280065	TMEM165	NM_001024802.1	NM_001024802.1		364137	67078415	NM_001024802.1	Tmem165	NP_001019973.1	ILMN_1362311	0004230537	S	942	TGGCGGAATGGGGTGATCGCTCTCAACTCACTACCATTGTTCTGGCAGCC	14	-	34270243-34270292	14p11	Rattus norvegicus transmembrane protein 165 (Tmem165), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_18777762-S	ILMN_284361	HRH4	NM_131909.1	NM_131909.1		170704	18777762	NM_131909.1	Hrh4	NP_571984.1	ILMN_1367186	0004060300	S	1150	GGAAGATACTCTGTGTGACAAAGCAACCAGCACCTTCACAGACCCAGTCA	18	+	4291815-4291864	18p13	Rattus norvegicus histamine receptor H4 (Hrh4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IDA]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence ISS]; Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans [goid 4969] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50657401-S	ILMN_295314	GGT6	NM_001002820.1	NM_001002820.1		408206	50657401	NM_001002820.1	Ggt6	NP_001002820.1	ILMN_1351216	0004560670	S	1423	CAGGTAGTAGTCCATGCAGAACACGCCCAGGTCTCCAGCATCCCTAGTGG	10	+	59322858-59322907	10q24	Rattus norvegicus gamma-glutamyl transferase 6 (Ggt6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence IEA]	Catalysis of the reaction: (5-L-glutamyl)-peptide + an amino acid = peptide + 5-L-glutamyl-amino acid [goid 3840] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639811-S	ILMN_283730	RGD1563167_PREDICTED	XM_001080336.1	XM_001080336.1		499156	109462017	XM_001080336.1	RGD1563167_predicted	XP_001080336.1	ILMN_1374605	0004210088	S	1618	CCTCTGGGGTACTTTTGGATGTTGCCTGTGCAGCCCCTTAGGAGTAGCCA				1q22	PREDICTED: Rattus norvegicus similar to growth arrest-specific protein 2 - mouse (predicted) (RGD1563167_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659502-S	ILMN_51010	RGS16	XM_341134.3	XM_341134.3		360857	109498032	XM_341134.3	Rgs16	XP_341135.3	ILMN_1352018	0006100170	S	579	AGACTCTTACCCACGCTTCCTCAAGTCACCTGCTTACCGCGACCTGGCTG	13	+	68811199-68811248	13q21	PREDICTED: Rattus norvegicus regulator of G-protein signaling 16 (Rgs16), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IMP]	Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27671317-S	ILMN_264657	ADAM24_PREDICTED	XM_001064767.1	XM_001064767.1		290774	109504236	XM_001064767.1	Adam24_predicted	XP_001064767.1	ILMN_1357204	0005050288	S	2012	GCATTGACAGTGGCAGTCCTGCACCCGAGGACCCTAACGCAAACAAAAGG				16q12.1	PREDICTED: Rattus norvegicus a disintegrin and metalloprotease domain 24 (testase 1) (predicted) (Adam24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640975-S	ILMN_63524	LOC502352	XM_577822.1	XM_577822.1		502352	62640975	XM_577822.1	LOC502352	XP_577822.1	ILMN_1359205	0005050075	S	36	GAGTCTGCCAGCAAGCCCACCTTTCATGTCAGCCAGATGCTCTTGGGTGA				1q32	PREDICTED: Rattus norvegicus similar to thioredoxin (LOC502352), mRNA.					
Rattus norvegicus	RefSeq	GI_62652435-S	ILMN_69172	SNTB1_PREDICTED	XM_235312.4	XM_235312.4		299940	109480778	XM_235312.4	Sntb1_predicted	XP_235312.4	ILMN_1368900	0000510215	S	1673	GCTGAAATCACCACCGCCTGCACCTACAGAAACCAGGAATGCCGCTTGAC	7	-	92160444-92160478:92164952-92164966	7q32	PREDICTED: Rattus norvegicus syntrophin, basic 1 (predicted) (Sntb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981385-S	ILMN_287067	PPARG	NM_013124.1	NM_013124.1		25664	6981385	NM_013124.1	Pparg	NP_037256.1	ILMN_1372572	0005570433	S	1421	AGCTGTTCGCCAAGGTGCTCCAGAAGATGACAGACCTCAGGCAGATTGTC	4	+	151616986-151617035	4q42	Rattus norvegicus peroxisome proliferator activated receptor gamma (Pparg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEP]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence ISS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence IMP]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus [goid 33993] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence IEA]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of adipocyte differentiation [goid 45598] [evidence IDA]; Any process that modulates the frequency, rate or extent of adipocyte differentiation [goid 45598] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of adipocyte differentiation [goid 45600] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of adipocyte differentiation [goid 45600] [evidence ISS]; The chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors, cell surface proteins that mediate the endocytosis of low-density lipoprotein by cells [goid 45713] [evidence IEA]; The chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors, cell surface proteins that mediate the endocytosis of low-density lipoprotein by cells [goid 45713] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole [goid 50872] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole [goid 50872] [evidence ISS]; Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) [goid 51974] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low density lipoprotein stimulus [goid 55098] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low density lipoprotein stimulus [goid 55098] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of adipocyte differentiation [goid 45600] [evidence IEA]; The chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors, cell surface proteins that mediate the endocytosis of low-density lipoprotein by cells [goid 45713] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole [goid 50872] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low density lipoprotein stimulus [goid 55098] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of adipocyte differentiation [goid 45600] [evidence ISS]; The chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors, cell surface proteins that mediate the endocytosis of low-density lipoprotein by cells [goid 45713] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole [goid 50872] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low density lipoprotein stimulus [goid 55098] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with a transcription activator, any protein whose activity is required to initiate or upregulate transcription [goid 33613] [evidence IEA]; Interacting selectively with a transcription activator, any protein whose activity is required to initiate or upregulate transcription [goid 33613] [evidence ISS]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence IEA]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence ISS]; Interacting selectively with arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 50544] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with a transcription activator, any protein whose activity is required to initiate or upregulate transcription [goid 33613] [evidence IEA]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with a transcription activator, any protein whose activity is required to initiate or upregulate transcription [goid 33613] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657900-S	ILMN_60267	LOC498083	XM_579781.1	XM_579781.1		498083	62657900	XM_579781.1	LOC498083	XP_579781.1	ILMN_1363603	0001450300	S	785	CAGGGGGACACGGCCATCCTCAGATTGAAAGCAGATGCCAGATGATCACC					PREDICTED: Rattus norvegicus LOC498083 (LOC498083), mRNA.					
Rattus norvegicus	RefSeq	GI_62665937-S	ILMN_265292	MYPN_PREDICTED	XM_001080508.1	XM_001080508.1		309760	109510035	XM_001080508.1	Mypn_predicted	XP_001080508.1	ILMN_1363565	0004150014	S	3753	TCAGTGGCACCAGCAAATCCCAACACCTATATCCATCCGGCCCAGCGGCA				20p11	PREDICTED: Rattus norvegicus myopalladin (predicted) (Mypn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654244-S	ILMN_70127	RAD54L2_PREDICTED	XM_343471.3	XM_343471.3		363135	109483935	XM_343471.3	Rad54l2_predicted	XP_343472.1	ILMN_1349700	0002260538	S	4885	AAAGTGGGAAATCAGGGACCGCAAACAGGGATGGAGTGTATGGCAGCCTG	8	-	111886219-111886268	8q32	PREDICTED: Rattus norvegicus Rad54 like 2 (S. cerevisiae) (predicted) (Rad54l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661135-S	ILMN_62794	RGD1562356_PREDICTED	XM_573715.2	XM_573715.2		498456	109501367	XM_573715.2	RGD1562356_predicted	XP_573715.2	ILMN_1363863	0003710064	S	267	CACTGAGAGAGAGGAAACCAAGCCAAAATCCCGAGACCTCCTTTCTGAGC	15	-	13074096-13074139:13077425-13077430	15p16	PREDICTED: Rattus norvegicus similar to hypothetical protein A430083B19 (predicted) (RGD1562356_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656276-S	ILMN_263670	LOC497933	XM_001078825.1	XM_001078825.1		497933	109491073	XM_001078825.1	LOC497933	XP_001078825.1	ILMN_1356343	0001050685	S	1552	GCACTTAAGGGGGACAGCCACGTCCACTCCTCTGTTCTCCTAGGGTTGAG				10q24	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 35 (LOC497933), mRNA.					
Rattus norvegicus	RefSeq	GI_12083624-S	ILMN_65360	ADNP	NM_022681.2	NM_022681.2		64622	83267871	NM_022681.2	Adnp	NP_073172.2	ILMN_1360977	0004070204	S	3355	GTGAGGATGGGGAGCAGTTTGACAGCATGACCGATGGAGTTGCCGATCCC	3	-	159347348-159347397	3q42	Rattus norvegicus activity-dependent neuroprotector homeobox (Adnp), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27685924-S	ILMN_70301	AKP5_PREDICTED	XM_237353.1	XM_237353.1		301585	27685924	XM_237353.1	Akp5_predicted	XP_237353.1	ILMN_1366357	0002370736	S	1511	TGCAGTGAGTCCAGGCTACATCTCCACCTTGCTGTGCCTGTTGGCAGGGA					PREDICTED: Rattus norvegicus alkaline phosphatase 5 (predicted) (Akp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658632-S	ILMN_282851	RGD1561730_PREDICTED	XM_001076037.1	XM_001076037.1		498169	109496802	XM_001076037.1	RGD1561730_predicted	XP_001076037.1	ILMN_1375210	0004780706	S	1	ATGGTCGTGCCCAACTCAGTCTTCCCCTGGAGAATGTCTGAGCATGTGTT				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (predicted) (RGD1561730_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653889-S	ILMN_279791	TEX9_PREDICTED	XM_001054229.1	XM_001054229.1		300822	109484939	XM_001054229.1	Tex9_predicted	XP_001054229.1	ILMN_1367032	0004150253	S	900	TGCTACAAGTCAGAGTGCCACGGAGGTCCGCCTGAATCGAGCTCTTGAAG					PREDICTED: Rattus norvegicus testis expressed gene 9 (predicted) (Tex9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661133-S	ILMN_62702	LOC498455	XM_573714.1	XM_573714.1		498455	62661133	XM_573714.1	LOC498455	XP_573714.1	ILMN_1349129	0001580088	S	620	GCAGAGCATGCAAGCCATCCTCCGGAAATCAGAGCTGACTGTAGGCGAGC					PREDICTED: Rattus norvegicus similar to MGC17310 protein (LOC498455), mRNA.					
Rattus norvegicus	RefSeq	GI_20376821-S	ILMN_265718	PROKR1	NM_138977.1	NM_138977.1		192648	20376821	NM_138977.1	Prokr1	NP_620433.1	ILMN_1373486	0005080348	S	1133	CCACGGGGATTCCTGCCACGGAGGAGGTGGACTGCATCCGACTGAAATAA				4q34	Rattus norvegicus prokineticin receptor 1 (Prokr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IMP]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IEA]	Gpr73	Gpr73
Rattus norvegicus	RefSeq	GI_62660101-S	ILMN_47762	LOC305135	XM_223154.3	XM_223154.3		305135	62660101	XM_223154.3	LOC305135	XP_223154.3	ILMN_1357536	0006900070	S	5624	TCACATCAGGAGTGTTCGCAACCAGTTTGTCCGCCCTCGCTTCAGGAGAG				14p22	PREDICTED: Rattus norvegicus similar to T-cell activation leucine repeat-rich protein (LOC305135), mRNA.					
Rattus norvegicus	RefSeq	GI_62651131-S	ILMN_48629	TTC8_PREDICTED	XM_234373.4	XM_234373.4		299246	109478539	XM_234373.4	Ttc8_predicted	XP_234373.2	ILMN_1370866	0001240092	S	1348	ACAACCTAGCCGTGCTGGAGATGCGGAAGGGTCACATTGAACAGGCACGC	6	+	123164342-123164385:123167476-123167481	6q32	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 8 (predicted) (Ttc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526936-S	ILMN_278128	TPPP3	NM_001009639.1	NM_001009639.1		291966	57526936	NM_001009639.1	Tppp3	NP_001009639.1	ILMN_1356424	0006220706	S	612	CTATGACGCCAAGGTGAAGAAGTGACACCTGCCAAAGCCCCCAGGGAGGT	19	-	35284355-35284380:35284381-35284404	19q11	Rattus norvegicus tubulin polymerization-promoting protein family member 3 (Tppp3), mRNA.				MGC105620; CGI-38	MGC105620; CGI-38
Rattus norvegicus	RefSeq	GI_62655594-S	ILMN_60996	LOC363528	XM_343849.2	XM_343849.2		363528	62655594	XM_343849.2	LOC363528	XP_343850.2	ILMN_1350271	0003060180	S	1224	ACTACTCAACAGCAGACAGCAACCTCTGAGCCCCAGGGAGAGTGTGCAGG				10q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110001I22 (predicted) (LOC363528), mRNA.					
Rattus norvegicus	RefSeq	GI_62662649-S	ILMN_50300	LOC498631	XM_579840.1	XM_579840.1		498631	62662649	XM_579840.1	LOC498631	XP_579840.1	ILMN_1366340	0001400129	S	434	AGACAGACAGACGTCGGCCGGCTTACCTCCCAGTGGGTGGTCGGTGGTCC					PREDICTED: Rattus norvegicus LOC498631 (LOC498631), mRNA.					
Rattus norvegicus	RefSeq	GI_58865905-A	ILMN_281659	PLD3	NM_001012167.1	NM_001012167.1		361527	58865905	NM_001012167.1	Pld3	NP_001012167.1	ILMN_1376992	0001660288	S	1724	TTAGCAGAGCTGAGGGAGGATCGGGCCCCAAAGAAGTGGGGGTGCATGCT	1	-	82612907-82612956	1q21	Rattus norvegicus phospholipase D family, member 3 (Pld3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate [goid 4630] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC109410	MGC109410
Rattus norvegicus	RefSeq	GI_61098458-S	ILMN_262801	CDH7	NM_001012737.1	NM_001012737.1		29162	61098458	NM_001012737.1	Cdh7	NP_001012755.1	ILMN_1372668	0006110463	S	2146	AAGGAAGCTGATGTGGATCCAGGGGCACCACCATATGACTCGCTTCAGAC	13	+	17020631-17020680	13p13	Rattus norvegicus cadherin 7, type 2 (Cdh7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cad7	Cad7
Rattus norvegicus	RefSeq	GI_47575946-S	ILMN_284439	OLR1492	NM_001000029.1	NM_001000029.1		287496	47575946	NM_001000029.1	Olr1492	NP_001000029.1	ILMN_1353278	0000670088	S	432	GGTGCTGCTGTCCTGGGTGTTTACCATGTTGTATTCCCTATTGCACACTT	10	-	60888500-60888549	10q24	Rattus norvegicus olfactory receptor 1492 (Olr1492), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1492	Olr1492
Rattus norvegicus	RefSeq	GI_62662624-S	ILMN_66359	LOC361885	XM_342182.2	XM_342182.2		361885	62662624	XM_342182.2	LOC361885	XP_342183.2	ILMN_1361625	0000050097	S	828	AAAGCAACCCTAAGAGAACACAAATGCCAGCCCAGGTTACTGTATCCTGC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC361885), mRNA.					
Rattus norvegicus	RefSeq	GI_62653727-S	ILMN_296202	NEIL1	NM_001025754.1	NM_001025754.1		367090	71043709	NM_001025754.1	Neil1	NP_001020925.1	ILMN_1371932	0001450369	S	1214	CAGAGGACCAAAGAGTAAGCCTGATACTCAACCCAGGGAGGCTGGGGAGA	8	-	60899387-60899436	8q24	Rattus norvegicus nei endonuclease VIII-like 1 (E. coli) (Neil1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IEA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence ISS]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process that stops or reduces the rate of nuclease activity, the hydrolysis of ester linkages within nucleic acids [goid 32074] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate [goid 3906] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any N-glycosyl bond [goid 16799] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence ISS]; Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site [goid 19104] [evidence ISS]	MGC116267	MGC116267
Rattus norvegicus	RefSeq	GI_62650057-I	ILMN_61342	GPR157_PREDICTED	XM_575961.1	XM_575961.1		313725	62650057	XM_575961.1	Gpr157_predicted	XP_575961.1	ILMN_1375446	0006370025	S	64	CCTCCGAGTGTCTTGACAAGAAGAAGGTGGGGATGGGCAGACCAACCAGA				5q36	PREDICTED: Rattus norvegicus G protein-coupled receptor 157 (predicted) (Gpr157_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978530-S	ILMN_290311	AQP4	NM_012825.1	NM_012825.1		25293	6978530	NM_012825.1	Aqp4	NP_036957.1	ILMN_1349349	0003610333	S	3004	GCAGTGAAGTGGAGATGCATTTTCTAGCAGTGGCAGAGTGCTGGGCACAC	18	-	6628203-6628252	18p13	Rattus norvegicus aquaporin 4 (Aqp4), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence ISS]; Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria [goid 15288] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	AQP4.M23; Miwc; MIWC2; AQP-4	AQP4.M23; Miwc; MIWC2; AQP-4
Rattus norvegicus	RefSeq	GI_21717654-S	ILMN_270834	STEAP3	NM_133314.1	NM_133314.1		170824	21717654	NM_133314.1	Steap3	NP_579848.1	ILMN_1373633	0002940441	S	2366	GTGGACTCTTGTCGGGGCAGTTCAGGGGGGAGGGAAGCATTAGAGATTGC	Un|NW_047910.1	+	160475-160524		Rattus norvegicus STEAP family member 3 (Steap3), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 Fe2+ + NAD+ = 2 Fe3+ + NADH + H+ [goid 293] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	MGC93147	MGC93147
Rattus norvegicus	RefSeq	GI_62651408-S	ILMN_282166	LUZP5_PREDICTED	XM_001061369.1	XM_001061369.1		362798	109480074	XM_001061369.1	Luzp5_predicted	XP_001061369.1	ILMN_1374247	0006130164	S	2707	CCAGACTTACCTGGCTGTGTGTAAAGATGCTGTCATGGTGGGACTTGGAG				6q33	PREDICTED: Rattus norvegicus leucine zipper protein 5 (predicted) (Luzp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666861-S	ILMN_298214	MBTPS2	NM_001035007.1	NM_001035007.1		302705	78042481	NM_001035007.1	Mbtps2	NP_001030179.1	ILMN_1352909	0001190341	S	1602	CTTTTGGCTGCCAATGTGACACTGGGACTCTGGATGGTTACAGCACGGTA	X	+	58756533-58756582	Xq21	Rattus norvegicus membrane-bound transcription factor peptidase, site 2 (Mbtps2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]	LRRGT00063	LRRGT00063
Rattus norvegicus	RefSeq	GI_62078768-S	ILMN_285631	HNRNPH2	NM_001014019.1	NM_001014019.1		308650	62078768	NM_001014019.1	Hnrnph2	NP_001014041.1	ILMN_1366491	0002570605	S	1401	GGCAGCCAGATGATGGGAGGGATGGGTTTATCCAACCAGTCTAGTTATGG	X	+	122061544-122061593	Xq34	Rattus norvegicus heterogeneous nuclear ribonucleoprotein H2 (H') (Hnrnph2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8392964-S	ILMN_278281	BAX	NM_017059.1	NM_017059.1		24887	8392964	NM_017059.1	Bax	NP_058755.1	ILMN_1353843	0004780131	S	216	TAATATGGAGCTGCAGAGGATGATTGCTGACGTGGACACGGACTCCCCCC	1	-	95936592-95936624:95937405-95937421	1q22	Rattus norvegicus Bcl2-associated X protein (Bax), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IMP]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 44445] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEP]; The non-specific expansion of T cell populations within a whole or part of an organism to reach to a total number of T cells which will then remain stable over time in the absence of an external stimulus [goid 1777] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IMP]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which a protein is incorporated into a mitochondrial membrane as an early step in apoptosis [goid 1844] [evidence ISS]; The non-specific expansion of B cell populations within a whole or part of an organism to reach to a total number of B cells which will then remain stable over time in the absence of an external stimulus [goid 2358] [evidence ISS]; Any process that modulates the frequency, rate or extent of nitrogen utilization [goid 6808] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial inner membrane [goid 7007] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial outer membrane [goid 7008] [evidence IDA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence TAS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence ISS]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; The breakdown of the nucleus into small membrane-bounded compartments, or blebs, each of which contain compacted DNA [goid 30264] [evidence ISS]; Any process that modulates the frequency, rate or extent of mammary gland epithelial cell proliferation [goid 33599] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer [goid 43496] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer [goid 43497] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence IDA]; Programmed cell death that occurs in the developing retina [goid 46666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]; Any process that activates or increases the deposition of coloring matter occurring during development [goid 48087] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules [goid 60011] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis of mammary epithelial cells during mammary gland involution [goid 60058] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IPI]; Interacting selectively with the BH3 domain of a protein of the Bcl-2 family. The BH3 domain is a potent death domain and has an important role in protein-protein interactions and in cell death [goid 51434] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653556-S	ILMN_290398	RGD1565079_PREDICTED	XM_001066017.1	XM_001066017.1		315593	109484576	XM_001066017.1	RGD1565079_predicted	XP_001066017.1	ILMN_1372096	0000050632	S	752	TGCGTGGAGAAGCAGACGGAATGAGGAGCGCCAGCTAAGACACAATGGGC				8q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC17839 (predicted) (RGD1565079_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650614-A	ILMN_301488	GPHB5	NM_001007013.1	NM_001007013.1		366668	55742663	NM_001007013.1	Gphb5	NP_001007014.1	ILMN_1376453	0005550010	S	166	ACAGATGCCTGCTGGGGTCGCTGTGAGACCTGGGAGAAACCCATTCTGGA	6	-	98009430-98009444:98011605-98011639	6q24	Rattus norvegicus glycoprotein hormone beta 5 (Gphb5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653015-S	ILMN_296799	H1FNT	NM_001024356.1	NM_001024356.1		500928	66730516	NM_001024356.1	H1fnt	NP_001019527.1	ILMN_1372712	0002190397	S	1286	CAGGGATGTTCCTCTGGGCACTGTTGCCTTTTCAGATGGGCTCCAAGGAG	7	-	136995426-136995475	7q36	Rattus norvegicus H1 histone family, member N, testis-specific (H1fnt), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The change in shape of the spermatid nucleus from a spherical structure to an elongated organelle, during the latter part of spermatid differentiation [goid 7290] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The progressive compaction of the spermatid chromatin so that it reaches a level of condensation that is not compatible with nuclear activities such as transcription or DNA replication [goid 35092] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666119-S	ILMN_277574	LOC682210	XM_001060443.1	XM_001060443.1		682210	109510174	XM_001060443.1	LOC682210	XP_001060443.1	ILMN_1358262	0004920519	S	873	GCCTGAAGGACAAGGCCAAGAACAGGCTCTCAATCAGGGATGCAACTGGG					PREDICTED: Rattus norvegicus similar to double homeobox 4c (LOC682210), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664413-S	ILMN_264190	FTMT_PREDICTED	XM_001057384.1	XM_001057384.1		291470	109507328	XM_001057384.1	Ftmt_predicted	XP_001057384.1	ILMN_1359805	0006100112	S	687	ATTAGGTGACCACGTGCACAACTTAGTCACTATGGGGGCTCCAGCCGCTG				18q11	PREDICTED: Rattus norvegicus ferritin mitochondrial (predicted) (Ftmt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655657-S	ILMN_280507	TMEM186	NM_001025756.1	NM_001025756.1		497863	71043787	NM_001025756.1	Tmem186	NP_001020927.1	ILMN_1362596	0005910022	S	276	GGTCTCCCCCCTCACAGGAGAAGCCACCAGGCACAGAGACTGAAAAATTC	10	+	7024105-7024154	10q12	Rattus norvegicus transmembrane protein 186 (Tmem186), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62662087-S	ILMN_262406	RGD1565023_PREDICTED	XM_001055900.1	XM_001055900.1		305671	109502084	XM_001055900.1	RGD1565023_predicted	XP_001055900.1	ILMN_1364762	0000610288	S	1368	TTTCCAGCTCTCCATCCACCGGCCAGAAAGTTCGCTTGCCATGAGCCCAG					PREDICTED: Rattus norvegicus similar to Suppressor of S. cerevisiae gcr2 (predicted) (RGD1565023_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663463	ILMN_56436	RGD1309427_PREDICTED	XM_238004.3	XM_238004.3		291081	62663463	XM_238004.3	RGD1309427_predicted	XP_238004.2	ILMN_1650251	0006510411	S	1455	AGTTCCCCAGGCCAAGCAGGTTAGGGAAAGCTGAGGTGAAAGGAGGGGGT				17p12	PREDICTED: Rattus norvegicus tubulin, beta-like (RGD1309427_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641233-S	ILMN_271361	USP31_PREDICTED	XM_001079412.1	XM_001079412.1		308959	109462809	XM_001079412.1	Usp31_predicted	XP_001079412.1	ILMN_1355449	0000940019	S	4435	GGGTGGGTGCACATTACTAATAAATGGGTTCAGGAGGAAGGTGACATGGG				1q36	PREDICTED: Rattus norvegicus ubiquitin specific protease 31 (predicted) (Usp31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642853-S	ILMN_288224	RGD1562952_PREDICTED	XM_001072232.1	XM_001072232.1		365661	109466009	XM_001072232.1	RGD1562952_predicted	XP_001072232.1	ILMN_1357110	0000580278	S	269	TACCAGCTTCCATTGCAAATCTGATTAATCTCAGGGAACTGGATGTCAGC				2q12-q13	PREDICTED: Rattus norvegicus similar to Erbb2 interacting protein isoform 2 (predicted) (RGD1562952_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642851-S	ILMN_288224	RGD1562952_PREDICTED	XM_001072232.1	XM_001072232.1		365661	109466009	XM_001072232.1	RGD1562952_predicted	XP_001072232.1	ILMN_1355084	0002810215	S	3731	GCAGCCTTGCCCTGAATGTTGCAGACGGAAGAGGTTCTGGTGGGCACAGT				2q12-q13	PREDICTED: Rattus norvegicus similar to Erbb2 interacting protein isoform 2 (predicted) (RGD1562952_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652661-S	ILMN_265848	NFKBIL2_PREDICTED	XM_001075280.1	XM_001075280.1		366953	109482493	XM_001075280.1	Nfkbil2_predicted	XP_001075280.1	ILMN_1367395	0004590195	S	3895	TGTCTGCCCTACAGGAGCGGCCCCAAGGCCTCAGCTTCTTTGACTTGTCA				7q34	PREDICTED: Rattus norvegicus nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 (predicted) (Nfkbil2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955135-S	ILMN_293686	MXD3	NM_145773.1	NM_145773.1		252915	21955135	NM_145773.1	Mxd3	NP_665716.1	ILMN_1357699	0007000400	S	583	GATCTGGAGGTGGATGTGGAAAGCCTGGTGTTTGGGACTGAGACGGAGCT	17	+	15349483-15349532	17p14	Rattus norvegicus Max dimerization protein 3 (Mxd3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Myx; Mad3	Myx; Mad3
Rattus norvegicus	RefSeq	GI_62650176-S	ILMN_67851	LOC362681	XM_342996.2	XM_342996.2		362681	62650176	XM_342996.2	LOC362681	XP_342997.2	ILMN_1364083	0000520577	S	1644	AGCTGACGGCACACAGTGGAGATGAAGCCACACGGCAGACAAGGCTGTCA				5q36	PREDICTED: Rattus norvegicus similar to pseudouridylate synthase-like 1 (LOC362681), mRNA.					
Rattus norvegicus	RefSeq	GI_62639147-S	ILMN_275162	RGD1564380_PREDICTED	XM_001076794.1	XM_001076794.1		292711	109461425	XM_001076794.1	RGD1564380_predicted	XP_001076794.1	ILMN_1364935	0006180497	S	791	CTTCATAATCCGAAACCTGAGGCTGGGAACTGTTGGCCTGCACTGTCGGG				1q21	PREDICTED: Rattus norvegicus similar to BC049730 protein (predicted) (RGD1564380_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659114-A	ILMN_287981	OAS2	NM_001009715.1	NM_001009715.1		363938	57527616	NM_001009715.1	Oas2	NP_001009715.1	ILMN_1376631	0000060484	S	2053	CACAGGTGATGTGGGAGGAGGTGACCGCTGGTGTTGGCATCTTCTAGCCA	12|NW_047389.1	+	28149-28198		Rattus norvegicus 2'-5'-oligoadenylate synthetase 2, 69/71kDa (Oas2), mRNA.		The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 6401] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666351	ILMN_70243	LOC365601	XM_345122.2	XM_345122.2		365601	62666351	XM_345122.2	LOC365601	XP_345123.2	ILMN_1650937	0003140181	S	1588	CTCTGGTACGGAGAGAAGAAGAGCCAGGTGATGATTCACGGGATCGAGCC				20q13	PREDICTED: Rattus norvegicus similar to autophagy 5-like (LOC365601), mRNA.					
Rattus norvegicus	RefSeq	GI_62662293-S	ILMN_295837	RGD1564325_PREDICTED	XM_001062245.1	XM_001062245.1		306259	109503804	XM_001062245.1	RGD1564325_predicted	XP_001062245.1	ILMN_1368772	0001340086	S	382	CCCACAAACAGCGAAAGGAATGCAAGAACAGAATGAAGACGGTCAGGAGG				16p16	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (predicted) (RGD1564325_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664108-S	ILMN_270113	NOL4_PREDICTED	XM_001053890.1	XM_001053890.1		307553	109507002	XM_001053890.1	Nol4_predicted	XP_001053890.1	ILMN_1372936	0001240064	S	3077	CCATACACTGGTGTGTTGAGGAGCGTCACAGGAACTCTGGTCTTGAAGTA				18p12	PREDICTED: Rattus norvegicus nucleolar protein 4 (predicted) (Nol4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11276092-S	ILMN_264944	FLT1	NM_019306.1	NM_019306.1		54251	11276092	NM_019306.1	Flt1	NP_062179.1	ILMN_1372038	0002360605	S	4655	GAGGAAAGGGAGAACAGCAAACGAGAGAGGCACAGGAAAAGGCCGTGGGC	12	+	8035888-8035937	12p11	Rattus norvegicus FMS-like tyrosine kinase 1 (Flt1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IDA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any series of molecular signals initiated by a ligand entering the target cell, where it binds to an intracellular receptor [goid 30522] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IDA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IDA]	Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IDA];  [goid 4716] [evidence TAS]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IEA]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence ISS]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IPI]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647769	ILMN_276178	RGD1565596_PREDICTED	XM_001075299.1	XM_001075299.1		500252	109473889	XM_001075299.1	RGD1565596_predicted	XP_001075299.1	ILMN_1650630	0000520273	S	714	AGTCTGGCGACATTTTGGAGTTTTCCGTCGTCTATCTGCCCTCCCCCTGG				4q34	PREDICTED: Rattus norvegicus similar to Gene model 461 (predicted) (RGD1565596_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666149-S	ILMN_60566	LOC499462	XM_574786.1	XM_574786.1		499462	62666149	XM_574786.1	LOC499462	XP_574786.1	ILMN_1362955	0002370020	S	2349	AAGGGCGTCTTTGGAGGGGCTGATAATGGTAGCGTGGTGAGTGAGGCTCC				20q12	PREDICTED: Rattus norvegicus similar to Na+ dependent glucose transporter 1 (LOC499462), mRNA.					
Rattus norvegicus	RefSeq	GI_62656620-S	ILMN_59550	RGD1309650_PREDICTED	XM_343943.3	XM_343943.3		363653	109488627	XM_343943.3	RGD1309650_predicted	XP_343944.3	ILMN_1373408	0007040687	S	3387	CAGTACCCGAAGTAAGAATGAGCAGAATGGGTCGTTCCTGGCCCTGCCTC	10	-	66770934-66770983	10q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930563A03 gene (predicted) (RGD1309650_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576516-S	ILMN_268312	OLR1625	NM_001000971.1	NM_001000971.1		405326	47576516	NM_001000971.1	Olr1625	NP_001000971.1	ILMN_1366731	0006200168	S	283	CAGGGCTGCATGGCCCAGATGTTCTTCATGCATTTCTTCGGGGGTGCTGA	15	-	26419727-26419776	15p14	Rattus norvegicus olfactory receptor 1625 (Olr1625), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1625	Olr1625
Rattus norvegicus	RefSeq	GI_62652908-S	ILMN_70124	RGD1310875_PREDICTED	XM_217013.4	XM_217013.4		300142	109481170	XM_217013.4	RGD1310875_predicted	XP_217013.2	ILMN_1354525	0001190292	S	2296	GGGTACAGGGGGTACAGGGCTTGTTGGGCTGCGTACTTCTGTCTCACACT	7	+	127390508-127390557	7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730502D15 gene (predicted) (RGD1310875_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663569-S	ILMN_268684	GMNN_PREDICTED	XM_001063272.1	XM_001063272.1		291137	109505756	XM_001063272.1	Gmnn_predicted	XP_001063272.1	ILMN_1374166	0000940066	S	682	CTGTGTCTTCCTCTTCCGATGGCACGGCGTGTACATGAGATGTGACTGCC				17p11	PREDICTED: Rattus norvegicus geminin (predicted) (Gmnn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591871-S	ILMN_284302	AK2	NM_030986.1	NM_030986.1		24184	13591871	NM_030986.1	Ak2	NP_112248.1	ILMN_1363976	0005270035	S	699	CCTGGCAGCCTTCTCCAAAGCCACATGTAAAGACTTGGTCATGTTTGTCT	5	+	148172971-148173020	5q36	Rattus norvegicus adenylate kinase 2 (Ak2), transcript variant 1, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine [goid 46083] [evidence TAS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence TAS]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside = ADP + nucleoside monophosphate [goid 19206] [evidence ISS]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653143-A	ILMN_299701	NFE2	NM_001012224.1	NM_001012224.1		366998	58866019	NM_001012224.1	Nfe2	NP_001012224.1	ILMN_1376557	0006660047	S	1256	CCGCACTCTGGAGGTCATGCGCCAACAGCTGACAGAGCTGTACCATGATA	7	-	142157123-142157172	7q36	Rattus norvegicus nuclear factor, erythroid derived 2 (Nfe2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13489074-S	ILMN_283323	PDE10A	NM_022236.1	NM_022236.1		63885	13489074	NM_022236.1	Pde10a	NP_071572.1	ILMN_1361915	0002630717	S	3309	GAATTAAAACACACCCCCATCCCCTCACTGTAGCCTTTGGCAACTTCGCC	1	-	46392936-46392985	1q11	Rattus norvegicus phosphodiesterase 10A (Pde10a), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence IDA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]	Pde10a3	Pde10a3
Rattus norvegicus	RefSeq	GI_62651053-S	ILMN_67757	LOC314311	XM_234410.3	XM_234410.3		314311	62651053	XM_234410.3	LOC314311	XP_234410.3	ILMN_1350190	0002630519	S	1614	CGAATCCAAACCAGGCCCTATCTCTTTGAACAAGTGACCAAGCTGGCCCG				6q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9830169C18 (predicted) (LOC314311), mRNA.					
Rattus norvegicus	RefSeq	GI_47058977-S	ILMN_270038	ABHD5	NM_212524.1	NM_212524.1		316122	47058977	NM_212524.1	Abhd5	NP_997689.1	ILMN_1369252	0006450040	S	888	TAGGTGGCTTGCACCCTGACATTCCAGTTTCAGTCATCTTCGGCGCCCGG	8	+	122172441-122172490	8q32	Rattus norvegicus abhydrolase domain containing 5 (Abhd5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. A droplet of triacylglycerol surrounded by a monolayer of phospholipids, interacting with the triacylglycerols and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins [goid 12511] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IDA]; Any process that activates or increases the activity of the enzyme lipoprotein lipase [goid 51006] [evidence ISS]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	CGI-58	CGI-58
Rattus norvegicus	RefSeq	GI_62644338-S	ILMN_280536	OLFML3_PREDICTED	XM_001064747.1	XM_001064747.1		310743	109467311	XM_001064747.1	Olfml3_predicted	XP_001064747.1	ILMN_1367643	0005420131	S	1734	CCGTGAGCGCCAGCTGTATGCCTGGGACGATGGCTACCAGATTGTCTACA				2q34	PREDICTED: Rattus norvegicus olfactomedin-like 3 (predicted) (Olfml3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61097950-S	ILMN_287892	HNRPL	XM_001074316.1	XM_001074316.1		80846	109461575	XM_001074316.1	Hnrpl	XP_001074316.1	ILMN_1370978	0003120563	S	1895	GCTAGGTCAGTAGAGGCTTAACCACAACAAATGCTGGAACTCTGGAGGGG				1q21	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein L (Hnrpl), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27691269-S	ILMN_272465	SCHIP1	XM_001061765.1	XM_001061765.1		295105	109466751	XM_001061765.1	Schip1	XP_001061765.1	ILMN_2040901	0003710615	S	1833	GACATCGGTGTTAGTCATTGGTAATGTCCACGCTTCCTGTCCCGTGACTG				2q31	PREDICTED: Rattus norvegicus schwannomin interacting protein 1 (Schip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	Unigene	Rn.26672	ILMN_160605	RN.26672	Rn.26672		Rn.26672		23724344	BU760118			ILMN_1530204	0003520056	S	154	ATTTCCATCAACAAGATAACAATGAATAAAATACTGTGGTAGTTGACAGA					UI-R-FS1-cqh-d-01-0-UI.s1 UI-R-FS1 Rattus norvegicus cDNA clone UI-R-FS1-cqh-d-01-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_27545429-S	ILMN_286633	TAS2R123	NM_173336.1	NM_173336.1		287003	27545429	NM_173336.1	Tas2r123	NP_775458.1	ILMN_1360642	0005890397	S	932	GACAAGCCACTCTTTCTGTGCTGCCTTGTCTTAGGTGCCGGTCCAAAGAT	4	-	170221192-170221241	4q43	Rattus norvegicus taste receptor, type 2, member 123 (Tas2r123), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	Tas2r14	Tas2r14
Rattus norvegicus	RefSeq	GI_47577560-S	ILMN_264751	OLR515	NM_001000315.1	NM_001000315.1		295768	47577560	NM_001000315.1	Olr515	NP_001000315.1	ILMN_1372848	0005220672	S	468	TGCCTCCTATACTGGTGGGGTTATGCATGGTGCTATACACACAGTGGCCA	3	+	69858815-69858864	3q24	Rattus norvegicus olfactory receptor 515 (Olr515), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr515; ratchr3-69754720-69755685_ORF	Olr515; ratchr3-69754720-69755685_ORF
Rattus norvegicus	RefSeq	GI_61557347-S	ILMN_269863	TESP1	NM_001013226.1	NM_001013226.1		363215	61557347	NM_001013226.1	Tesp1	NP_001013244.1	ILMN_1372836	0002260035	S	1266	TCGCACCCCTTGAGGAAACGGCACCATCCCTGATAGGCTGGAGGAATTAC	9	+	33247015-33247064	9q21	Rattus norvegicus testicular serine protease 1 (Tesp1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659679-S	ILMN_63755	LOC498269	XM_573494.1	XM_573494.1		498269	62659679	XM_573494.1	LOC498269	XP_573494.1	ILMN_1372454	0002940575	S	1327	GTTGGCTCATGGGGGAGCTTTGTTAAAGTGGAAGTTGTGCCTGCTGCACC				13q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C030014K22 gene (LOC498269), mRNA.					
Rattus norvegicus	RefSeq	GI_34874049-S	ILMN_61372	NUP153	XM_341508.3	XM_341508.3		25281	109504693	XM_341508.3	Nup153	XP_341509.3	ILMN_2040387	0000780376	S	4873	GCGGAGTTTGTGGTGGTGTATGTGTGAAGTAAGTTGGATGTATTGTGCAC	17	+	24083399-24083448	17p13	PREDICTED: Rattus norvegicus nucleoporin 153 (Nup153), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27661599-S	ILMN_69317	RGD1561986_PREDICTED	XM_219665.2	XM_219665.2		293819	109459939	XM_219665.2	RGD1561986_predicted	XP_219665.2	ILMN_1354161	0002640341	S	47	CATATGATGAAGGTCCTCAGAATGCTTCCAGTGGTGAGCCTGGCTTGAGG	1	-	217605933-217605982	1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110001I22 (predicted) (RGD1561986_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662864-S	ILMN_51852	LOC361172	XM_341458.2	XM_341458.2		361172	62662864	XM_341458.2	LOC361172	XP_341459.2	ILMN_1364046	0003610450	S	2407	GACCCGGAGGTCCGTAGGTACATGGAAGATTTGAGAGCATGAGCTGGGAC					PREDICTED: Rattus norvegicus similar to hypothetical protein BC013035 (LOC361172), mRNA.					
Rattus norvegicus	RefSeq	GI_62649611-S	ILMN_265365	RGD1559909_PREDICTED	XM_001056490.1	XM_001056490.1		362592	109477204	XM_001056490.1	RGD1559909_predicted	XP_001056490.1	ILMN_1357626	0004210239	S	357	CCCTTTCCAGGGCCGATGGCTGGACTCTGACCAACTCCCTTCACCAAAAG				5q36	PREDICTED: Rattus norvegicus RGD1559909 (predicted) (RGD1559909_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25140990-S	ILMN_265244	CD247	NM_170789.1	NM_170789.1		25300	25140990	NM_170789.1	Cd247	NP_740770.1	ILMN_1370659	0006200066	S	1414	CTTCCCCATCCAGTGGCAGGAAGACCCAGACCACCCAGTTCTGTAGTGCT	13	+	81594424-81594473	13q23	Rattus norvegicus Cd247 molecule (Cd247), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence IDA]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence ISS]; A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein [goid 42105] [evidence ISS]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	TCRzeta	TCRzeta
Rattus norvegicus	RefSeq	GI_62718095-S	ILMN_297881	LOC680831	XM_001059100.1	XM_001059100.1		680831	109513159	XM_001059100.1	LOC680831	XP_001059100.1	ILMN_1365454	0000070440	S	1614	AGCGCTGGGAGATCCCGGGAGTTGACTGTTGAGCTTATATTGTCTCATCC	Un|NW_047868.1	-	207141-207190		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4a (LOC680831), mRNA.					
Rattus norvegicus	RefSeq	GI_57113800-S	ILMN_277588	V1RC15	NM_001008928.1	NM_001008928.1		494276	57113800	NM_001008928.1	V1rc15	NP_001008928.1	ILMN_1368632	0002450577	S	420	CCGGATCTTCTACGTTGGTGCTTATACCAACGTGAGTGAGACCAGCCAGA	4	-	96416330-96416379	4q31	Rattus norvegicus vomeronasal 1 receptor, C15 (V1rc15), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652608-S	ILMN_54818	RHPN1_PREDICTED	XM_216954.4	XM_216954.4		300030	109480880	XM_216954.4	Rhpn1_predicted	XP_216954.4	ILMN_1350277	0003360706	S	1758	GCTGGCCTGAAGGAGGGTGACTACATCGTGTCTGTGAATGGGCAGCCTTG	7	+	113674135-113674184	7q34	PREDICTED: Rattus norvegicus rhophilin, Rho GTPase binding protein 1 (predicted) (Rhpn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018571-S	ILMN_285578	TMEM19	NM_199098.1	NM_199098.1		299800	40018571	NM_199098.1	Tmem19	NP_954529.1	ILMN_1360678	0007040497	S	1515	CCTCTGTGGGTAAAGATTCACGAACAATGGAGCTGCTCTTGGCCTCAGTG	7	-	54606716-54606765	7q22	Rattus norvegicus transmembrane protein 19 (Tmem19), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC72591	MGC72591
Rattus norvegicus	RefSeq	GI_25282452-S	ILMN_279756	EIF2B1	NM_172029.1	NM_172029.1		64514	25282452	NM_172029.1	Eif2b1	NP_742026.1	ILMN_1355787	0006590044	S	1225	TACAGACTGCAAAGCTGAGGAGAGATGGCACAGGAGCAGGGACCCCCCAG	12	+	33146327-33146376	12q15	Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 1 alpha (Eif2b1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA [goid 5850] [evidence TAS]; Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA [goid 5850] [evidence IDA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IDA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IDA]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IDA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress [goid 32057] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence TAS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IDA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IMP]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Modulates the activity of an enzyme [goid 30234] [evidence IMP]	eIF-2a	eIF-2a
Rattus norvegicus	RefSeq	GI_62665993-S	ILMN_273852	RFXDC1_PREDICTED	XM_001059352.1	XM_001059352.1		294395	109510137	XM_001059352.1	Rfxdc1_predicted	XP_001059352.1	ILMN_1350008	0004200364	S	2521	GACAGCGGCCGGAAGCAGAGCAACTTGTTTTATGCACACACATCCTCTCC				20q11	PREDICTED: Rattus norvegicus regulatory factor X domain containing 1 (predicted) (Rfxdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652557-S	ILMN_52115	LOC500886	XM_576286.1	XM_576286.1		500886	62652557	XM_576286.1	LOC500886	XP_576286.1	ILMN_1349551	0001190324	S	3784	AGAGCAAGCCAATTGATCCCAGAGAAGACTCGCAGCTGTCACTCTTAAAG					PREDICTED: Rattus norvegicus similar to LRRG00130 (LOC500886), mRNA.					
Rattus norvegicus	RefSeq	GI_47577392-S	ILMN_272029	OLR445	NM_001001049.1	NM_001001049.1		405936	47577392	NM_001001049.1	Olr445	NP_001001049.1	ILMN_1368206	0006660369	S	305	GGTTTGCTGGTCTTTTCGTGGGAACTGAATGTTTCCTCCTTGCCGCCATG	3	+	68841576-68841625	3q24	Rattus norvegicus olfactory receptor 445 (Olr445), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr445	Olr445
Rattus norvegicus	RefSeq	GI_62654969-S	ILMN_264929	MRPS9	XM_001059532.1	XM_001059532.1		301371	109487026	XM_001059532.1	Mrps9	XP_001059532.1	ILMN_1353438	0002320161	S	1083	CACTGAGGACGAGGTTGAGTGGATGAGACAAGCCGGACTACTTACTCCTG				9q22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S9 (Mrps9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648905-S	ILMN_277168	RECK_PREDICTED	XM_001070551.1	XM_001070551.1		313488	109476412	XM_001070551.1	Reck_predicted	XP_001070551.1	ILMN_1350201	0002350239	S	4040	GTGCTTTCGGAGGAGCTCAGTGCTGATGTTCTGTACCTCTGGCAGTTGCC				5q22	PREDICTED: Rattus norvegicus reversion-inducing-cysteine-rich protein with kazal motifs (predicted) (Reck_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648903-S	ILMN_277168	RECK_PREDICTED	XM_001070551.1	XM_001070551.1		313488	109476412	XM_001070551.1	Reck_predicted	XP_001070551.1	ILMN_2038951	0002030719	S	451	TGCTGCAGTTACGCGGGGCATCACACCAACTGCCGAGAATTCTGTCAAGC				5q22	PREDICTED: Rattus norvegicus reversion-inducing-cysteine-rich protein with kazal motifs (predicted) (Reck_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577466	ILMN_277180	OLR473	NM_001000302.1	NM_001000302.1		295744	47577466	NM_001000302.1	Olr473	NP_001000302.1	ILMN_1651078	0001690528	S	776	GGCGACCCACTGAGGAGTCAGTGGAACAAGGAAAGATGGTGGCTGTGTTC	3	+	69219162-69219211	3q24	Rattus norvegicus olfactory receptor 473 (Olr473), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr473	Olr473
Rattus norvegicus	RefSeq	GI_20302080-S	ILMN_301071	MYO16	NM_138893.1	NM_138893.1		192253	20302080	NM_138893.1	Myo16	NP_620248.1	ILMN_1357469	0003520010	S	6572	ACAGGACTTTCAACAGGACTGACAAGCAGGCTGAGTCTCGTGGGACAGAG	16	-	83812403-83812452	16q12.5	Rattus norvegicus myosin XVI (Myo16), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of S phase of mitotic cell cycle activity [goid 45749] [evidence IDA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658628-S	ILMN_269754	ZCWPW1_PREDICTED	XM_001076305.1	XM_001076305.1		304368	109497112	XM_001076305.1	Zcwpw1_predicted	XP_001076305.1	ILMN_1364227	0004590017	S	1925	TGGAAGACATTGGAGAGCCAGAAGAGAGAGGGGAGATGCAGCAGAGGGGC				12q12	PREDICTED: Rattus norvegicus zinc finger, CW-type with PWWP domain 1 (predicted) (Zcwpw1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41152503-S	ILMN_298516	PTPRD	NM_019140.2	NM_019140.2		25529	41152503	NM_019140.2	Ptprd	NP_062013.1	ILMN_1374103	0003610059	S	5778	CCATGGCCCCGCCCAACACCTCGACCCAGCTCCAAGTGCCCTGAATGTGA					Rattus norvegicus protein tyrosine phosphatase, receptor type, D (Ptprd), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RPTPd; MGC124537	RPTPd; MGC124537
Rattus norvegicus	RefSeq	GI_62718427-S	ILMN_301859	LOC691487	XM_001078495.1	XM_001078495.1		691487	109513619	XM_001078495.1	LOC691487	XP_001078495.1	ILMN_1371859	0003360066	S	1184	GTCTCCAAGGCAAGCCACAGGCTATATGTCTATTCTGCAAAAGGAGCAGC	Un|NW_047891.1	+	51154-51203		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC691487), mRNA.					
Rattus norvegicus	RefSeq	GI_10120495-S	ILMN_266762	UTS2R	NM_020537.1	NM_020537.1		57305	10120495	NM_020537.1	Uts2r	NP_065412.1	ILMN_1361738	0003130494	S	848	AGTACCACGAGGCCATGCCACTGACTCCCGAGACTGCACGCATTGTCAAC	10	+	110395629-110395678	10q32.3	Rattus norvegicus urotensin 2 receptor (Uts2r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	 [goid 1604] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Gpr14; Senr	Gpr14; Senr
Rattus norvegicus	RefSeq	GI_62646132-S	ILMN_265030	RGD1563036_PREDICTED	XR_009438.1	XR_009438.1		366179	109470754	XR_009438.1	RGD1563036_predicted		ILMN_1365493	0006900193	S	3	GAAGGCTGTCCCAGAGAAGAAAAGGGTTGCTGCTGACAGAAGGTTGCCAG				3q35	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (predicted) (RGD1563036_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663913-S	ILMN_276256	RGD1564327_PREDICTED	XM_001072297.1	XM_001072297.1		364786	109506185	XM_001072297.1	RGD1564327_predicted	XP_001072297.1	ILMN_1358562	0005340735	S	2037	GCAGGCTCACATCCTGGTGGACTGTGGAGAAGACAACCTCTGTGTTCCTG				17q12.3	PREDICTED: Rattus norvegicus similar to integrin alpha 8 (predicted) (RGD1564327_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647660-S	ILMN_273744	DOK1	NM_001025416.1	NM_001025416.1		312477	70794755	NM_001025416.1	Dok1	NP_001020587.1	ILMN_1359536	0003610079	S	1525	GGGACCAGAGGAGTCAAGTGATGACCAGTCCCCGGAAGTTGTGGGAGTAG	4	-	117242903-117242952	4q34	Rattus norvegicus docking protein 1 (Dok1), mRNA.		The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]	 [goid 5066] [evidence IEA];  [goid 5066] [evidence ISS]; Interacting selectively with the insulin receptor [goid 5158] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Dok-1	Dok-1
Rattus norvegicus	RefSeq	GI_51011130-S	ILMN_269888	LOC298116	NM_001003409.1	NM_001003409.1		298116	51011130	NM_001003409.1	LOC298116	NP_001003409.1	ILMN_1373699	0004760546	S	556	GCCTGAGACTCCAGGTGGGCAATCTCCAGTGAGAGCAAGTGCTGAGTGGA	5	-	78707570-78707581:78708379-78708416	5q24	Rattus norvegicus alpha-2u-globulin (L type) (LOC298116), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650632-S	ILMN_69424	LOC362732	XM_343054.2	XM_343054.2		362732	62650632	XM_343054.2	LOC362732	XP_343055.2	ILMN_1355259	0007000242	S	1645	CTGGGGAGTAAGAAGCATAACGCACCTCGCCTCTGGCTCTTGGAAAAAGC				6q21	PREDICTED: Rattus norvegicus similar to putative protein, with at least 6 transmembrane domains, of ancient origin (58.5 kD) (3N884) (predicted) (LOC362732), mRNA.					
Rattus norvegicus	RefSeq	GI_54020745-S	ILMN_276854	PABPC1	NM_134353.2	NM_134353.2		171350	54020745	NM_134353.2	Pabpc1	NP_599180.1	ILMN_1358564	0002680332	S	2347	CTGTCTAAATTGATCAGGGACCACGAACAGAAACTCGTGCTTCACCGAAG	7	-	72116177-72116219:72116695-72116701	7q22	Rattus norvegicus poly(A) binding protein, cytoplasmic 1 (Pabpc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA [goid 8143] [evidence ISS]	Pabp1; MGC91496; Pabp	Pabp1; MGC91496; Pabp
Rattus norvegicus	RefSeq	GI_62653128-S	ILMN_293395	TARBP2	NM_001034941.1	NM_001034941.1		363006	77917581	NM_001034941.1	Tarbp2	NP_001030113.1	ILMN_1370539	0006180338	S	1319	GCCTTGAGACTGAGGAAGGCAAAGGCAAGCAAGGAGCCATGAACCACAGG				7q36	Rattus norvegicus TAR (HIV) RNA binding protein 2 (Tarbp2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of viral genome replication [goid 45070] [evidence ISS]; Any process that modulates the frequency, rate or extent of the transcription of the viral genome [goid 46782] [evidence ISS]; Any host process that results in the inhibition of antiviral immune response mechanisms, thereby facilitating viral replication. The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 50689] [evidence ISS]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124970	MGC124970
Rattus norvegicus	RefSeq	GI_62647040-S	ILMN_286763	MGC112899	NM_001037795.1	NM_001037795.1		500087	83642831	NM_001037795.1	MGC112899	NP_001032884.1	ILMN_1360881	0003780270	S	359	CATCAGCCTGGAGGGAAGGGCTGGGAGCCATGATGCAGAAAGTCCTCAGA	4	+	66114986-66115018:66115019-66115035	4q22	Rattus norvegicus similar to RIKEN cDNA 1110001J03 (MGC112899), mRNA.					
Rattus norvegicus	RefSeq	GI_13591921-S	ILMN_274550	CHRM2	NM_031016.1	NM_031016.1		81645	13591921	NM_031016.1	Chrm2	NP_112278.1	ILMN_1363635	0005860154	S	2124	GTCTCCTGCTCTCTTGAAGAAGGGCGTCAGAGTCTACAATTTCATGTCTC				4q22	Rattus norvegicus cholinergic receptor, muscarinic 2 (Chrm2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IEA]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IDA]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4981] [evidence IEA];  [goid 4981] [evidence IDA];  [goid 4981] [evidence ISS]	Acm2	Acm2
Rattus norvegicus	Unigene	Rn.128948	ILMN_161242	RN.128948	Rn.128948		Rn.128948		33161624	CF108118			ILMN_1530237	0004760575	S	607	ACACATTAATATCCACAAAGCACAGCTGAATAAGAACGAAGAACGGTTTA					Shultzomica01369 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig1035 5', mRNA					
Rattus norvegicus	RefSeq	GI_34855143-S	ILMN_270026	RGD1308013_PREDICTED	XM_001068272.1	XM_001068272.1		362336	109473348	XM_001068272.1	RGD1308013_predicted	XP_001068272.1	ILMN_1350915	0002680154	S	1046	CAGGGCATGGCAGAAGGATGATGGGCAGACTCCTTTGGTTCTAAGGGATC				4q22	PREDICTED: Rattus norvegicus similar to hypothetical protein B230314O19 (predicted) (RGD1308013_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639041-S	ILMN_57191	LOC292247	XM_217809.3	XM_217809.3		292247	62639041	XM_217809.3	LOC292247	XP_217809.3	ILMN_1363249	0001580102	S	185	GGCTGTGGAGAGCATGCCAACTGGAGAAGAGCATTATGGTGAGCTGGTGA					PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (LOC292247), mRNA.					
Rattus norvegicus	RefSeq	GI_62654901-S	ILMN_61530	HS6ST1_PREDICTED	XM_237060.4	XM_237060.4		316325	109485937	XM_237060.4	Hs6st1_predicted	XP_237060.4	ILMN_1358565	0005360368	S	1141	GACACGGAAGAGCCAGGCCGAGTACCCACCGAGGACTACATGAGCCATAT	9	+	35016007-35016056	9q21	PREDICTED: Rattus norvegicus heparan sulfate 6-O-sulfotransferase 1 (predicted) (Hs6st1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27705783-S	ILMN_161791	LOC294473	XM_228242.1	XM_228242.1			27705783	XM_228242.1	LOC294473		ILMN_2039646	0006660414	S	2013	CAGGGGTCCTCTGGAACTCTTCCTGGATCAACTGCTGATGGAAGTTCGAG										
Rattus norvegicus	RefSeq	GI_62638991-S	ILMN_284704	RGD1561918_PREDICTED	XM_001067208.1	XM_001067208.1		292545	109461060	XM_001067208.1	RGD1561918_predicted	XP_001067208.1	ILMN_1361897	0002940152	S	2781	CACCTTGGACTACACTGGCTTGGTTGTCCTGTGTGAGGCTTTGAGACAGC				1q12	PREDICTED: Rattus norvegicus similar to NACHT, leucine rich repeat and PYD containing 4A (predicted) (RGD1561918_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758607-S	ILMN_274935	LIM2	NM_053771.1	NM_053771.1		114903	16758607	NM_053771.1	Lim2	NP_446223.1	ILMN_1369335	0003290010	S	731	AGTGGGAGGGAACTGAGACGAAGACATAAGCCTCCACCTGCACTGAGGGG	1	+	93811884-93811933	1q22	Rattus norvegicus lens intrinsic membrane protein 2 (Lim2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]	The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]	Mp19; MP20	Mp19; MP20
Rattus norvegicus	RefSeq	Rn.18628	ILMN_282841	DHRS1	NM_001007621.1	NM_001007621.1		290234	56090380	NM_001007621.1	Dhrs1	NP_001007622.1	ILMN_1530346	0005420487	S	1502	TACATCTTAATAGCTTGCTTGAGTCATAAGTGGTTATAAGTAGAAGTTAA	15	-	33900716-33900765	15p13	Rattus norvegicus dehydrogenase/reductase (SDR family) member 1 (Dhrs1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC94370	MGC94370
Rattus norvegicus	RefSeq	GI_62645578-S	ILMN_279100	EIF2AK4_PREDICTED	XM_001074965.1	XM_001074965.1		114859	109470443	XM_001074965.1	Eif2ak4_predicted	XP_001074965.1	ILMN_1349193	0001190471	S	4859	GCTAGAGTGGGACGCTGATGAACAGGCATTTAACACAACCGTGAAACAGC				3q35	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 2 alpha kinase 4 (predicted) (Eif2ak4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650266-I	ILMN_51255	THUMPD2_PREDICTED	XM_575981.1	XM_575981.1		313851	62650266	XM_575981.1	Thumpd2_predicted	XP_575981.1	ILMN_1376066	0006660270	S	983	AGAACTTACCTCCAGACAGCGGGGCTGCGGTCAACCATAGCGTGGGCTAT				6q12	PREDICTED: Rattus norvegicus THUMP domain containing 2 (predicted) (Thumpd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662821-S	ILMN_274335	SPFH2_PREDICTED	XM_001061817.1	XM_001061817.1		290823	109504271	XM_001061817.1	Spfh2_predicted	XP_001061817.1	ILMN_1355314	0001050735	S	1023	TGGGCAAGCAGTCTGAGGGGCTGAGTGACAAGCTGGGCTTTGGCCTAGAA				16q12.4	PREDICTED: Rattus norvegicus SPFH domain family, member 2 (predicted) (Spfh2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526965-S	ILMN_290867	MRPL16	NM_001009647.1	NM_001009647.1		293754	57526965	NM_001009647.1	Mrpl16	NP_001009647.1	ILMN_1357886	0004540739	S	1073	AGCACTCAGGAGGCAGAGACGGGTGGGTCTCGTTTGAGTTCAAGGCCACT	1	+	214550094-214550143	1q43	Rattus norvegicus mitochondrial ribosomal protein L16 (Mrpl16), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC109535	MGC109535
Rattus norvegicus	RefSeq	GI_31543894-S	ILMN_274845	TRHR	NM_013047.2	NM_013047.2		25570	31543894	NM_013047.2	Trhr	NP_037179.1	ILMN_1353808	0001690026	S	3615	GACTCCATGATTTGGGGTCCTGTTAGAGCCTGGGGCCCTGCACATATTAG				7q31	Rattus norvegicus thyrotropin releasing hormone receptor (Trhr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	 [goid 4997] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4997] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47058973-S	ILMN_285263	KCNE4	NM_212526.1	NM_212526.1		367302	47058973	NM_212526.1	Kcne4	NP_997691.1	ILMN_1357371	0006110398	S	483	TCACCATCCAGGAAGAGGGGGCTGATGAGGAGCTTGAGGAGACCTCTGAG	9	+	78201946-78201995	9q33	Rattus norvegicus potassium voltage-gated channel, Isk-related subfamily, gene 4 (Kcne4), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646325-S	ILMN_276993	JPH2	NM_001037974.1	NM_001037974.1		296345	83816930	NM_001037974.1	Jph2	NP_001033063.1	ILMN_1353022	0006550170	S	1961	CTGAGCAAGGCGGGTGCCAAGAAGAAGGGCCGGAAAGAAGTGGCACAGGA	3	-	154224052-154224101	3q42	Rattus norvegicus junctophilin 2 (Jph2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; The lipid bilayer surrounding the sarcoplasmic reticulum [goid 33017] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: D-xylose = D-xylulose [goid 9045] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_15100180-S	ILMN_264695	PSMC2	NM_033236.1	NM_033236.1		25581	15100180	NM_033236.1	Psmc2	NP_150239.1	ILMN_1356223	0006520368	S	1162	GGAGCGGAGATTAGAAGCGTTTGCACAGAGGCTGGTATGTTTGCAATCCG	4	-	8704291-8704340	4q11	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase 2 (Psmc2), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IEA]; A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]	MSS1	MSS1
Rattus norvegicus	RefSeq	GI_34870766-S	ILMN_49787	ZFP39_PREDICTED	XM_220504.2	XM_220504.2		303173	34870766	XM_220504.2	Zfp39_predicted	XP_220504.2	ILMN_1356287	0007050019	S	1827	CCTCAGCAGGCATCAGAGAAACCACACAGGGGACAGACCATATGCCTGTG				10q22	PREDICTED: Rattus norvegicus zinc finger protein 39 (predicted) (Zfp39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640932-S	ILMN_281965	RGD1305036_PREDICTED	XR_008152.1	XR_008152.1		308837	109462455	XR_008152.1	RGD1305036_predicted		ILMN_1349474	0006100041	S	2913	ACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGA				1q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610034N24 (predicted) (RGD1305036_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865711-A	ILMN_295440	RRP1	NM_001012073.1	NM_001012073.1		309674	58865711	NM_001012073.1	Rrp1	NP_001012073.1	ILMN_1376252	0006220180	S	1593	ACTCGTACATAGCTGTGGCTGTGCCTGATCCTGACCAGAGAGGCCAGAAG	20	+	10606747-10606796	20p12	Rattus norvegicus ribosomal RNA processing 1 homolog (S. cerevisiae) (Rrp1), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit [goid 30688] [evidence IEA]; A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit [goid 30688] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_18373338-A	ILMN_268556	KHK	NM_031855.2	NM_031855.2		25659	18373338	NM_031855.2	Khk	NP_114061.1	ILMN_1376906	0002680435	S	129	GTGGCTTGCAGGGGTTTGATGGCATTGTGTGAGAGATGAGCGGTGGGAGG	6	-	25435231-25435255:25438207-25438231	6q14	Rattus norvegicus ketohexokinase (Khk), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y [goid 16052] [evidence TAS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 1-phosphate [goid 4454] [evidence TAS]; Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 1-phosphate [goid 4454] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 1-phosphate [goid 4454] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	KETHPRO	KETHPRO
Rattus norvegicus	RefSeq	GI_34854409-S	ILMN_299039	LOC680856	XM_001059198.1	XM_001059198.1		680856	109464519	XM_001059198.1	LOC680856	XP_001059198.1	ILMN_1351296	0002690278	S	2	TGACTTGTAAAGAATGTGGTACTCCTGGCTTCCGGAGTCCCAGCACCCAG	2	+	63206578-63206627	2q16	PREDICTED: Rattus norvegicus similar to NEDD4-binding protein 1 (N4BP1) (LOC680856), mRNA.					
Rattus norvegicus	RefSeq	GI_62655661-S	ILMN_64985	LOC501673	XM_577070.1	XM_577070.1		501673	62655661	XM_577070.1	LOC501673	XP_577070.1	ILMN_1374529	0002030270	S	1008	CCGTGTTCAACCTCAGAGCAAGAGCCCTTTGCATTGTCTACCACACCAGC					PREDICTED: Rattus norvegicus similar to envelope protein (LOC501673), mRNA.					
Rattus norvegicus	RefSeq	GI_18266703-S	ILMN_265451	TRPC5	NM_080898.1	NM_080898.1		140933	18266703	NM_080898.1	Trpc5	NP_543174.1	ILMN_1367249	0005420082	S	502	CTACTACAATGTCAACATCAACTGCATGGATCCTTTGGGCAGGAGCGCCC	X	+	34027200-34027249	Xq14	Rattus norvegicus transient receptor potential cation channel, subfamily C, member 5 (Trpc5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Trrp5	Trrp5
Rattus norvegicus	RefSeq	GI_16923981-S	ILMN_288317	HRK	NM_057130.1	NM_057130.1		117271	16923981	NM_057130.1	Hrk	NP_476471.1	ILMN_1357530	0002760139	S	5036	GGTCTTTGCACTGGAAGAGTCAAGGAGCCGGTATGGATGGCAGAGGTGGC	12	-	39520346-39520395	12q16	Rattus norvegicus harakiri, BCL2 interacting protein (contains only BH3 domain) (Hrk), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; A change in the state or activity of a cell (in terms of enzyme production, gene expression, etc.) as a result of deprivation of potassium ions [goid 51365] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Dp5; Hrk	Dp5; Hrk
Rattus norvegicus	RefSeq	GI_27674608-S	ILMN_63141	MMP28_PREDICTED	XM_220785.4	XM_220785.4		303384	109488697	XM_220785.4	Mmp28_predicted	XP_220785.3	ILMN_2040019	0006860209	S	1460	GACCACTATTGGCACTTGGATCAAGCCAAACTGCGGGTGACCAGCTCTGG	10	-	71526805-71526854	10q26	PREDICTED: Rattus norvegicus matrix metallopeptidase 28 (epilysin) (predicted) (Mmp28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978576-S	ILMN_49155	C4BPA	NM_012516.1	NM_012516.1		24235	6978576	NM_012516.1	C4bpa	NP_036648.1	ILMN_1354635	0004060601	S	1532	CCCAAAGGTGTCCAGATGTGAGCAGGAGGTCCCTAAAGACTGTGAGCACG				13q13	Rattus norvegicus complement component 4 binding protein, alpha (C4bpa), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]	Interacting selectively with any component or product of the complement cascade [goid 1848] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	C4BP; MGC108761	C4BP; MGC108761
Rattus norvegicus	RefSeq	GI_62642144-S	ILMN_50972	LOC499342	XM_574652.1	XM_574652.1		499342	62642144	XM_574652.1	LOC499342	XP_574652.1	ILMN_1366611	0006130068	S	817	GCTTGAGAAAACAAGGTATTTTCTCCTTTGCTGTGCTCCCAGCGGGAATG				1q52	PREDICTED: Rattus norvegicus similar to PD-1-ligand precursor (LOC499342), mRNA.					
Rattus norvegicus	RefSeq	GI_62662029-S	ILMN_55489	LOC306166	XM_224520.3	XM_224520.3		306166	62662029	XM_224520.3	LOC306166	XP_224520.3	ILMN_1368276	0000430746	S	1431	CAAGAACAATTCCAGGTAGTAAAGCAGTACTTGGAAACGGAAATGAAGGG				15q24	PREDICTED: Rattus norvegicus similar to multidrug resistance-associated protein 4 (LOC306166), mRNA.					
Rattus norvegicus	RefSeq	GI_47577748-S	ILMN_280728	OLR1254	NM_001001085.1	NM_001001085.1		405976	47577748	NM_001001085.1	Olr1254	NP_001001085.1	ILMN_1370761	0006620041	S	540	CATTCCCCCTCTGCTTCAGCTTTCTTGCACGACCACACACGTCAATGAGC	8	-	40787573-40787622	8q22	Rattus norvegicus olfactory receptor 1254 (Olr1254), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1254	Olr1254
Rattus norvegicus	RefSeq	GI_62646741-S	ILMN_262563	LOC678896	XM_001053686.1	XM_001053686.1		678896	109500638	XM_001053686.1	LOC678896	XP_001053686.1	ILMN_1370617	0006590603	S	519	AACGGGCAGTTTGATGGCGCCAAGGGTCCTGCTAAAGTTGCCCGGAAAAC					PREDICTED: Rattus norvegicus similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) (LOC678896), mRNA.					
Rattus norvegicus	RefSeq	GI_62639338-S	ILMN_50165	LRFN3_PREDICTED	XM_218483.4	XM_218483.4		308495	109458528	XM_218483.4	Lrfn3_predicted	XP_218483.2	ILMN_1374819	0001450026	S	2754	GGATCCAGACATCCCTCGGGACCTGGCCTCAGACTCACCAAATTGCTCAC	1	-	85308990-85309039	1q21	PREDICTED: Rattus norvegicus leucine rich repeat and fibronectin type III domain containing 3 (predicted) (Lrfn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667512-S	ILMN_266721	RGD1563037_PREDICTED	XM_001053713.1	XM_001053713.1		309357	109462285	XM_001053713.1	RGD1563037_predicted	XP_001053713.1	ILMN_1374026	0001410519	S	1140	GGCAAGGGTGGTCATCACACAGAGCCCTGGCAAGTATGTCCTTCCTCCAC				Xq37	PREDICTED: Rattus norvegicus similar to family with sequence similarity 11, member A (predicted) (RGD1563037_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302064-S	ILMN_270283	GOLGB1	NM_138885.1	NM_138885.1		192243	20302064	NM_138885.1	Golgb1	NP_620240.1	ILMN_1360368	0004850594	S	9993	CGGTAAGCTGGCCTGCCACATCCGCTCTCCTTAAACACGTCGGCTTCTGA	11	-	65647435-65647484	11q22	Rattus norvegicus golgi autoantigen, golgin subfamily b, macrogolgin 1 (Golgb1), mRNA.					
Rattus norvegicus	RefSeq	GI_62659454-S	ILMN_48812	RGD1561049_PREDICTED	XM_573472.2	XM_573472.2		498248	109497987	XM_573472.2	RGD1561049_predicted	XP_573472.2	ILMN_1371532	0007000161	S	740	TTCATGGACAGATGATTGTGAGTTCCTTATACAACTGTAGGATGTTGCTG	13	-	60562180-60562229	13q21	PREDICTED: Rattus norvegicus similar to discs large homolog 7 (predicted) (RGD1561049_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661064-S	ILMN_55680	LOC498443	XM_573696.1	XM_573696.1		498443	62661064	XM_573696.1	LOC498443	XP_573696.1	ILMN_1367291	0001410600	S	406	CAAGAGAATAATTCCTACCGCATCAGAAACTTCCACCTCCTGAATGAACG					PREDICTED: Rattus norvegicus similar to Spetex-2E (LOC498443), mRNA.					
Rattus norvegicus	RefSeq	GI_62646140-S	ILMN_268599	RGD1561323_PREDICTED	XR_009445.1	XR_009445.1		366183	109470791	XR_009445.1	RGD1561323_predicted		ILMN_1354079	0004560093	S	30	CAACATTCCAGAAAGTGTGGACATGACTCTGAAGGGGCACACAGTCGCTG				3q36	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1561323_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959219-S	ILMN_263838	FGF8	NM_133286.1	NM_133286.1		29349	18959219	NM_133286.1	Fgf8	NP_579820.1	ILMN_1355059	0005290408	S	217	GCAAAGCTCATTGTGGAGACCGATACTTTTGGAAGCAGAGTCCGAGTCCG	1	-	250952269-250952318	1q54	Rattus norvegicus fibroblast growth factor 8 (Fgf8), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process by which the anatomical structures of the neural plate are generated and organized. Morphogenesis pertains to the creation of form. The neural plate is a specialized region of columnar epithelial cells in the dorsal ectoderm that will give rise to nervous system tissue [goid 1839] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell [goid 9792] [evidence ISS]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence ISS]; The process whose specific outcome is the progression of the pallium over time, from its formation to the mature structure. The pallium is the roof region of the telencephalon [goid 21543] [evidence ISS]; The process whose specific outcome is the progression of the subpallium over time, from its formation to the mature structure. The subpallium is the base region of the telencephalon [goid 21544] [evidence ISS]; The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain [goid 21798] [evidence ISS]; The creation of greater cell numbers in the forebrain due to cell division of progenitor cells [goid 21846] [evidence ISS]; The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell [goid 21884] [evidence IMP]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence IMP]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site along the dorsal-ventral body axis in response to a combination of attractive and repulsive cues [goid 33563] [evidence IMP]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; The process by which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons [goid 48699] [evidence ISS]; The process by which the anatomical structures of the forebrain are generated and organized. Morphogenesis pertains to the creation of form. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 48853] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal [goid 42056] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62656138-S	ILMN_50204	RGD1305774_PREDICTED	XM_213311.4	XM_213311.4		287353	109488135	XM_213311.4	RGD1305774_predicted	XP_213311.4	ILMN_1353687	0005910494	S	445	CAGGCATACCAGGAACGAGACATCTTGGCTACCCTCAGCCACCCACTGGT	10	-	45297832-45297881	10q22	PREDICTED: Rattus norvegicus hypothetical LOC287353 (predicted) (RGD1305774_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656136-S	ILMN_50204	RGD1305774_PREDICTED	XM_213311.4	XM_213311.4		287353	109488135	XM_213311.4	RGD1305774_predicted	XP_213311.4	ILMN_1364812	0005270433	S	4441	GAGGGGACTCGCGACCTGCAGAAAGGCCTGCGCAAGGGACTCATTCAATT	10	-	45287408-45287457	10q22	PREDICTED: Rattus norvegicus hypothetical LOC287353 (predicted) (RGD1305774_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640443-S	ILMN_48850	RGD1305958	XM_219705.4	XM_219705.4		309255	109458863	XM_219705.4	RGD1305958	XP_219705.4	ILMN_1374791	0003440358	S	2283	CATCATGGCCTTCCACAAGCTGTCTGTCCTGGCTGACGAGGTGGACAAGC	1	+	118774923-118774972	1q22	PREDICTED: Rattus norvegicus similar to BB128963 protein (RGD1305958), mRNA.					
Rattus norvegicus	RefSeq	GI_62652642-S	ILMN_56581	CYC1_PREDICTED	XM_216944.4	XM_216944.4		300047	109480908	XM_216944.4	Cyc1_predicted	XP_216944.2	ILMN_1357206	0005860465	S	920	GTTGTTGATGATGGGCTTGCTGCTGCCCCTGACCTATGCCATGAAGCGGC	7	+	114396282-114396331	7q34	PREDICTED: Rattus norvegicus cytochrome c-1 (predicted) (Cyc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661091-S	ILMN_295076	LOC498446	XM_001079520.1	XM_001079520.1		498446	109516139	XM_001079520.1	LOC498446	XP_001079520.1	ILMN_1349479	0004120075	S	357	GGCCAGCAAGACCATGTACACCGCAGATACTGAATCCTTGTGTCCTGTTA				15p16	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498446), mRNA.					
Rattus norvegicus	RefSeq	GI_26024222-S	ILMN_297726	ABCG5	NM_053754.2	NM_053754.2		114628	26024222	NM_053754.2	Abcg5	NP_446206.2	ILMN_1358631	0001500136	S	2143	AGGGCTCCGAGAACTCACCGTCCTTTGCTAGTCCAGCTTATGGGGCAGTG	6	-	8027924-8027973	6q12	Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 5 (Abcg5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter [goid 43190] [evidence TAS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence IEP]; The directed movement of sterols into, out of, within or between cells. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 15918] [evidence TAS]; Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption [goid 30300] [evidence TAS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	sterolin 1	sterolin 1
Rattus norvegicus	RefSeq	GI_48976086-S	ILMN_282652	TFB1M	NM_181474.2	NM_181474.2		308140	48976086	NM_181474.2	Tfb1m	NP_852139.2	ILMN_1364544	0000450341	S	1345	GCAAAAACTAACAGCGCAAAGAAAATGCCCAAAGGACTGGGGGGAGGGGC	1	-	38513899-38513948	1p11-q11	Rattus norvegicus transcription factor B1, mitochondrial (Tfb1m), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically [goid 154] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor [goid 179] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule [goid 8649] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13592036-S	ILMN_53177	RAB3B	NM_031091.2	NM_031091.2		81755	77627738	NM_031091.2	Rab3b	NP_112353.1	ILMN_1350723	0005340072	S	676	TGACTCAATGGACACAGACCCCTCCGTGCTGGGCGCCTCCAAGACCACAC	5	+	130283572-130283621	5q35	Rattus norvegicus RAB3B, member RAS oncogene family (Rab3b), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence TAS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]; The methylation of peptidyl-cysteine to form peptidyl-S-methyl-L-cysteine [goid 18125] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence NAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639478-S	ILMN_57103	LOC502325	XM_577790.1	XM_577790.1		502325	62639478	XM_577790.1	LOC502325	XP_577790.1	ILMN_1370018	0001690341	S	988	GGAAAGCCTCCCACACCAAATCTCAGCATCAGAGCACTCCCAGAGACGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610020C11 (LOC502325), mRNA.					
Rattus norvegicus	RefSeq	GI_62653895-S	ILMN_276492	PRTG	NM_001037651.1	NM_001037651.1		315806	83320091	NM_001037651.1	Prtg	NP_001032740.1	ILMN_1367438	0005340093	S	3375	GAGCACTCAGCAAACAGTGAAGGCAGCCACGAGACAGGGGATTCTGGAAG	8	+	77646073-77646122	8q24	Rattus norvegicus protogenin homolog (Gallus gallus) (Prtg), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]		Prtg	Prtg
Rattus norvegicus	RefSeq	GI_62639310-S	ILMN_48931	RGD1310942_PREDICTED	XM_218462.4	XM_218462.4		292767	109458477	XM_218462.4	RGD1310942_predicted	XP_218462.4	ILMN_1360045	0000380575	S	2701	TTGACTGTGTGGTCAAGGACCCCGAGATGCCGTGCTTCCTCTTTCGTGAC	1	-	84325801-84325850	1q21	PREDICTED: Rattus norvegicus similar to R27328_1 (predicted) (RGD1310942_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639308-S	ILMN_48931	RGD1310942_PREDICTED	XM_218462.4	XM_218462.4		292767	109458477	XM_218462.4	RGD1310942_predicted	XP_218462.4	ILMN_1357983	0005420411	S	3270	GCCTGGGCCTCACTACGCTGGAGGATTAACAACATCATGGCGTCCGAGTC	1	-	84323173-84323222	1q21	PREDICTED: Rattus norvegicus similar to R27328_1 (predicted) (RGD1310942_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19924052-S	ILMN_267981	PPRF18	NM_138523.1	NM_138523.1		171552	19924052	NM_138523.1	Pprf18	NP_612532.1	ILMN_1353121	0002470142	S	1534	GGAAGACCAGCAAAGAGTAGCAAAGTGAACTGACACCACACAGGGCTGCC	17	+	84769584-84769633	17q12.3	Rattus norvegicus PRP18 pre-mRNA processing factor 18 homolog (yeast) (Pprf18), mRNA.					
Rattus norvegicus	RefSeq	GI_62653595-S	ILMN_60993	EVA_PREDICTED	XM_236197.3	XM_236197.3		300679	62653595	XM_236197.3	Eva_predicted	XP_236197.3	ILMN_1353427	0007040008	S	1720	TATGCCGACAGAGTTGGCCTCAAACCTAGAGACCCCCTGCCTCAGCTCTC				8q22	PREDICTED: Rattus norvegicus epithelial V-like antigen (predicted) (Eva_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644058-S	ILMN_57111	LOC497763	XM_579052.1	XM_579052.1		497763	62644058	XM_579052.1	LOC497763	XP_579052.1	ILMN_1359235	0000770632	S	1213	TCTGACTGTGTGCAAGCCCAATTACACCTCTCTGAATGTATCCTGCAAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001001508 (LOC497763), mRNA.					
Rattus norvegicus	RefSeq	GI_62645741	ILMN_50611	LOC366146	XM_345413.2	XM_345413.2		366146	62645741	XM_345413.2	LOC366146	XP_345414.2	ILMN_1650526	0007000128	S	389	ATGGCATTCCTACTCCAACACCCCCACCAACAGCACCAGTACGGAACAAG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25059 (LOC366146), mRNA.					
Rattus norvegicus	RefSeq	GI_62664546-S	ILMN_63677	LOC361340	XM_341623.2	XM_341623.2		361340	62664546	XM_341623.2	LOC361340	XP_341624.2	ILMN_1351678	0002230504	S	736	TCACAGAGACCGAAGTCACGAGCCAGGAAGTCACGAGCCAGGAAGTCTCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5330437I02 gene (LOC361340), mRNA.					
Rattus norvegicus	RefSeq	GI_62647481-S	ILMN_68805	LOC502773	XM_578271.1	XM_578271.1		502773	62647481	XM_578271.1	LOC502773	XP_578271.1	ILMN_1358931	0006200619	S	1289	CACCACCCAACCCCTGAGGCACCATCACAGGACCTATTTCGCCCTTGGTA				4q24	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC502773), mRNA.					
Rattus norvegicus	RefSeq	GI_62643857-S	ILMN_68618	RGD1562059_PREDICTED	XM_342293.3	XM_342293.3		361993	109465218	XM_342293.3	RGD1562059_predicted	XP_342294.3	ILMN_1351046	0000730707	S	1538	CTCAGCGGAGCCGGGTGGTGCAGAGCAGCTGTAACCCAATCTTCAACGAA	2	+	189336611-189336660	2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110038F21 (predicted) (RGD1562059_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647679-S	ILMN_262810	MGC124888	XM_001068056.1	XM_001068056.1		297387	109473732	XM_001068056.1	MGC124888	XP_001068056.1	ILMN_1359894	0005670132	S	1089	GGTGCTGTGTGGCCACCCTGTTACTGTTAATGTCCTTCTTTGTTTTCACC				4q34	PREDICTED: Rattus norvegicus similar to Mob4B protein, transcript variant 2 (MGC124888), mRNA.					
Rattus norvegicus	RefSeq	Rn.24123	ILMN_262810	MGC124888	XM_001068056.1	XM_001068056.1		297387	109473732	XM_001068056.1	MGC124888	XP_001068056.1	ILMN_1530521	0000780270	S	2385	TAAGTATGCTCAGAATTTTAAAGGAACTGTTTTGTCTTTATTTTGGCTGA				4q34	PREDICTED: Rattus norvegicus similar to Mob4B protein, transcript variant 2 (MGC124888), mRNA.					
Rattus norvegicus	RefSeq	GI_52421334-S	ILMN_302752	CNR1	NM_012784.3	NM_012784.3		25248	52421334	NM_012784.3	Cnr1	NP_036916.1	ILMN_1374666	0001240348	S	1479	ATGCACAGGGCCGCGGAGAGCTGCATCAAGAGCACCGTTAAGATCGCGAA	5	+	50445358-50445407	5q21	Rattus norvegicus cannabinoid receptor 1 (brain) (Cnr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with cannabinoids to initiate a change in cell activity [goid 4949] [evidence IMP]; Combining with cannabinoids to initiate a change in cell activity [goid 4949] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IMP]	SKR6R	SKR6R
Rattus norvegicus	RefSeq	GI_32996722-S	ILMN_293836	CBR4	NM_182672.1	NM_182672.1		359725	32996722	NM_182672.1	Cbr4	NP_872613.1	ILMN_1374981	0003850035	S	696	CCCTCTTGGGAGGTTTGGAGAAGCTCTTGAGGTGGCACATGCCGTTGTGT	16	-	31943303-31943352	16p12	Rattus norvegicus carbonyl reductase 4 (Cbr4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC105271	MGC105271
Rattus norvegicus	RefSeq	GI_13928803-S	ILMN_279689	SV2C	NM_031593.1	NM_031593.1		29643	13928803	NM_031593.1	Sv2c	NP_113781.1	ILMN_1355784	0001770040	S	2220	GGAGAGCAACGGGCTTTGGCTTCTTGAACGCACTCTGTAAAGCAGCGGCC	2	-	26327214-26327259:26380028-26380031	2q12	Rattus norvegicus synaptic vesicle glycoprotein 2c (Sv2c), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9945327-S	ILMN_294087	ADAM15	NM_020308.1	NM_020308.1		57025	9945327	NM_020308.1	Adam15	NP_064704.1	ILMN_1358509	0006770605	S	2689	CCACTGAATTACCTGCAGCTGAGTGTTGGGAAGGGGCTGGGGCTGGAGTA	2	-	181527238-181527287	2q34	Rattus norvegicus a disintegrin and metallopeptidase domain 15 (metargidin) (Adam15), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence TAS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MDC15; tMDCVI	MDC15; tMDCVI
Rattus norvegicus	RefSeq	GI_62649685-S	ILMN_64971	LOC313040	XM_232753.3	XM_232753.3		313040	62649685	XM_232753.3	LOC313040	XP_232753.3	ILMN_1355435	0004480102	S	10085	GCGGGCCACATTTGAGAACCCCATGTATGACCGCAACATCCAGACCACAG				5q36	PREDICTED: Rattus norvegicus similar to CUB and Sushi multiple domains 2 (LOC313040), mRNA.					
Rattus norvegicus	RefSeq	GI_62666858	ILMN_286267	TAF5L	XM_001053692.1	XM_001053692.1		307927	109509039	XM_001053692.1	Taf5l	XP_001053692.1	ILMN_1650763	0006860333	S	2201	ATTGAGAAGAGGAAACCTAGCACTGGCAGCAAGTGACTCCTGGCACTGGC				19q12	PREDICTED: Rattus norvegicus TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor (Taf5l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658536-S	ILMN_273660	RGD1305631_PREDICTED	XM_001074417.1	XM_001074417.1		304330	109496670	XM_001074417.1	RGD1305631_predicted	XP_001074417.1	ILMN_1356381	0001990082	S	623	CCTCACACCGGAACCTGTCAGCGAAACCAAGCGACAGCAAAATGTCTGCC				12q11	PREDICTED: Rattus norvegicus similar to 2810437L13Rik protein (predicted) (RGD1305631_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644709-S	ILMN_282297	RGD1560880_PREDICTED	XM_001077425.1	XM_001077425.1		499747	109469536	XM_001077425.1	RGD1560880_predicted	XP_001077425.1	ILMN_1357214	0002260358	S	441	TGCTGTGTTGTCTCCTAGCCTGACTATCCAACTTTCAGGGCTGTGGGGCC				3p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310002J15 (predicted) (RGD1560880_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651815-S	ILMN_61081	LOC500803	XM_580122.1	XM_580122.1		500803	62651815	XM_580122.1	LOC500803	XP_580122.1	ILMN_1366692	0002030324	S	851	GCCCACACTCGAACCTCACCATATACCAACAGGGGGCGCTATGAAACCGG					PREDICTED: Rattus norvegicus LOC500803 (LOC500803), mRNA.					
Rattus norvegicus	RefSeq	GI_62658493-S	ILMN_53151	LOC498148	XM_573358.1	XM_573358.1		498148	62658493	XM_573358.1	LOC498148	XP_573358.1	ILMN_1368526	0004050053	S	2343	TGGTGCACGACTGAGCCAGCAGCCCCCAGCGGGGATGTGTGGGAGCATGT					PREDICTED: Rattus norvegicus similar to F-box and leucine-rich repeat protein 18 (LOC498148), mRNA.					
Rattus norvegicus	RefSeq	GI_62650138	ILMN_65329	LOC362670	XM_347070.2	XM_347070.2		362670	62650138	XM_347070.2	LOC362670	XP_347071.1	ILMN_1650747	0003610711	S	385	TGCTTTGGAGGGGCGTGCAGGCTGTGAGATAGGGGTCAGACGAAACTAGC					PREDICTED: Rattus norvegicus hypothetical LOC362670 (LOC362670), mRNA.					
Rattus norvegicus	RefSeq	GI_6978838-S	ILMN_296869	FGF1	NM_012846.1	NM_012846.1		25317	6978838	NM_012846.1	Fgf1	NP_036978.1	ILMN_1368605	0003440014	S	1104	TTGAGTACCCCCAGGCACTTAGCATGACTACCCTTCCCCCTACCAGCACC	18	-	31785511-31785560	18p11	Rattus norvegicus fibroblast growth factor 1 (Fgf1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IDA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	HBGF1; HBGF-1	HBGF1; HBGF-1
Rattus norvegicus	RefSeq	GI_22094140-I	ILMN_268836	RIMS2	NM_145881.1	NM_145881.1		116839	22094140	NM_145881.1	Rims2	NP_665888.1	ILMN_1376127	0003170452	I	117	GTCTCCGCTCAACAGCCGCCAAAACGCCTCGTATCTTGTACCGCGGGAAA	7	+	75235599-75235648	7q22	Rattus norvegicus regulating synaptic membrane exocytosis 2 (Rims2), transcript variant 2, mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nim2; Rim2	Nim2; Rim2
Rattus norvegicus	RefSeq	GI_16758819-A	ILMN_268836	RIMS2	NM_145881.1	NM_145881.1		116839	22094140	NM_145881.1	Rims2	NP_665888.1	ILMN_1376271	0002320647	A	1543	GCGGTCGACTGGGCTGCTCTGGGAGGCAATGTCATTCACTAATGCCAAGA	7	+	75271353-75271402	7q22	Rattus norvegicus regulating synaptic membrane exocytosis 2 (Rims2), transcript variant 2, mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nim2; Rim2	Nim2; Rim2
Rattus norvegicus	RefSeq	GI_62718620-S	ILMN_49434	LOC362805	XM_347079.2	XM_347079.2		362805	62718620	XM_347079.2	LOC362805	XP_347080.2	ILMN_1360961	0000510446	S	70	CAAGTGGGGTCCTAGTCGTGTCCGAAGATATGTTATCCATAATTGCAGAG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC362805), mRNA.					
Rattus norvegicus	RefSeq	GI_62661904	ILMN_67440	LOC364361	XM_344384.2	XM_344384.2		364361	62661904	XM_344384.2	LOC364361	XP_344385.2	ILMN_1650507	0001740471	S	801	GAGCTCACAGTGTCTGAGTCTAAAGCTCACCAGGGGACGCCCCAATAGAG				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC364361), mRNA.					
Rattus norvegicus	RefSeq	GI_62661912-S	ILMN_68071	LOC501994	XM_577421.1	XM_577421.1		501994	62661912	XM_577421.1	LOC501994	XP_577421.1	ILMN_1354220	0004560519	S	90	GAACAGACTTCAAACGATTCAAACTCGCCCACGTGGCACTCAGTGCTCCG					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region PHDS58 precursor (LOC501994), mRNA.					
Rattus norvegicus	RefSeq	GI_62639184-S	ILMN_275809	HNRPUL1_PREDICTED	XM_001070607.1	XM_001070607.1		361522	109461433	XM_001070607.1	Hnrpul1_predicted	XP_001070607.1	ILMN_1374452	0001740450	S	3414	CTCCAGGAGTCTTGGTAGTTTCTGGTGGGCTTAAGCGGGGGAGAGGGTGA				1q21	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein U-like 1 (predicted), transcript variant 3 (Hnrpul1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646338-S	ILMN_272324	SVS6_PREDICTED	XM_001071089.1	XM_001071089.1		362267	109471276	XM_001071089.1	Svs6_predicted	XP_001071089.1	ILMN_1350432	0001780670	S	212	GCGATGATGGCGACGACAAGAGGAGTTTATCTGCAGGGGAAATAGAGCGG				3q42	PREDICTED: Rattus norvegicus seminal vesicle secretion 6 (predicted) (Svs6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643975-S	ILMN_301267	RGD1308305_PREDICTED	XR_007366.1	XR_007366.1		295193	109467077	XR_007366.1	RGD1308305_predicted		ILMN_1373689	0001170484	S	1647	TTCCCAGAAGCAGGGAGTACCAGGCGAGAGCAACAGAGAACAGGAGGAGG				2q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5430400H23 (predicted) (RGD1308305_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654649-S	ILMN_68304	LRFN2	XM_236914.4	XM_236914.4		316205	109485695	XM_236914.4	Lrfn2	XP_236914.4	ILMN_1364437	0004280528	S	2878	GGGAGAGGAAGGAGTCAGAGTCAGCACTGGCAAGTATTTGTGGAGTTTCC	9	-	7109618-7109667	9q11-q12	PREDICTED: Rattus norvegicus leucine rich repeat and fibronectin type III domain containing 2 (Lrfn2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663994-S	ILMN_67277	LOC364800	XM_344641.2	XM_344641.2		364800	62663994	XM_344641.2	LOC364800	XP_344642.2	ILMN_1359656	0002320152	S	775	GGCCGCCCATTTGACGTATGGAGTCAGTTTCCTGTGTATCCACATCTTAC				17q12.3	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC364800), mRNA.					
Rattus norvegicus	RefSeq	GI_62650195-S	ILMN_68718	RGD1311019_PREDICTED	XM_238442.4	XM_238442.4		298694	109475916	XM_238442.4	RGD1311019_predicted	XP_238442.4	ILMN_1352097	0005340746	S	2001	CCCACAGCCCTCAGACTTCCCTCAGCTTGTCACACCTGCCAGAGAAGGTA	5	-	173056680-173056702:173056937-173056963	5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434H2010 (predicted) (RGD1311019_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643708-S	ILMN_60969	PET112L_PREDICTED	XM_342270.2	XM_342270.2		361974	62643708	XM_342270.2	Pet112l_predicted	XP_342271.2	ILMN_1366273	0000610167	S	473	TAGTGGGTACTCTGTTTACTAGTCCTCTGTGCTGCTGTAGTGCCGTGGCG				2q34	PREDICTED: Rattus norvegicus PET112-like (yeast) (predicted) (Pet112l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54312087-A	ILMN_281921	ATP2B4	NM_001005871.1	NM_001005871.1		29600	54312087	NM_001005871.1	Atp2b4	NP_001005871.1	ILMN_1376735	0006020546	S	4047	AGCTGCTCCTAAGCATGTGAGAACCCCCACCTGACCATGAAGAAGCACAG				13q13	Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 4 (Atp2b4), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence TAS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence TAS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence TAS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]	PMCA4	PMCA4
Rattus norvegicus	RefSeq	GI_62642579-S	ILMN_296968	LOC499384	XM_579956.1	XM_579956.1		499384	62642579	XM_579956.1	LOC499384	XP_579956.1	ILMN_1371161	0006550402	S	607	GTGCAGCAGCTCCCCTGTAGGTAGATTGACCTCCATGATCTCAGTGCATC	1|NW_047579.1	+	107834-107883		PREDICTED: Rattus norvegicus hypothetical LOC499384 (LOC499384), mRNA.					
Rattus norvegicus	RefSeq	GI_22219435-S	ILMN_272594	CYP3A13	NM_147206.1	NM_147206.1		171352	22219435	NM_147206.1	Cyp3a13	NP_671739.1	ILMN_1369315	0006130239	S	1883	GTTCACTCCTGGGGGTTTTGGGTGTTCTTTGAGCTTTCTCAGCCTCTGTG	12	+	17204575-17204604	12q11	Rattus norvegicus cytochrome P450, family 3, subfamily a, polypeptide 13 (Cyp3a13), mRNA.				P450olf3; MGC93139; Cyp3a9	P450olf3; MGC93139; Cyp3a9
Rattus norvegicus	RefSeq	GI_18373325-S	ILMN_65288	SNCB	NM_080777.1	NM_080777.1		113893	18373325	NM_080777.1	Sncb	NP_542955.1	ILMN_1354192	0002470020	S	446	CCAGAGGCGAAGGGTCCATGAGGAAGCGGAGCACCAGCAGCAAATTCCTT				17p14	Rattus norvegicus synuclein, beta (Sncb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence IEA]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_16758525-S	ILMN_292179	DMRT1	NM_053706.1	NM_053706.1		114498	16758525	NM_053706.1	Dmrt1	NP_446158.1	ILMN_1368167	0001980736	S	1038	CTCCTACTCAGAAGCCAAAGCAAGTGTGTTCTCGCCGCCCAGCAGTCAAG	1	+	228994369-228994394:229036534-229036557	1q51	Rattus norvegicus doublesex and mab-3 related transcription factor 1 (Dmrt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence IEA]; The establishment of the sex of a male organism by physical differentiation [goid 46661] [evidence TAS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652408-S	ILMN_67760	LOC500868	XM_576266.1	XM_576266.1		500868	62652408	XM_576266.1	LOC500868	XP_576266.1	ILMN_1374354	0000360717	S	777	AAAGATTGGTGTCATAGAACCTTATGGTTACAAACACACTGGAGAGGATG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500868), mRNA.					
Rattus norvegicus	RefSeq	GI_62641156-S	ILMN_262931	RGD1309847_PREDICTED	XR_009191.1	XR_009191.1		308894	109462708	XR_009191.1	RGD1309847_predicted		ILMN_1372757	0001770471	S	1854	GCGTACTTTTGAGCAGACGGTGGTGCGTGATGGGACTCTGGGTTCAGGTG				1q34	PREDICTED: Rattus norvegicus similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor; peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor protein-1 (predicted) (RGD1309847_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646649-S	ILMN_273447	RGD1562922_PREDICTED	XM_001057256.1	XM_001057256.1		499972	109472922	XM_001057256.1	RGD1562922_predicted	XP_001057256.1	ILMN_1349102	0006200725	S	1435	CCACCGCGCATGCTCCGCTACCTGCAGCTGGACTTTGAAGATCTGCTCTA				4q11	PREDICTED: Rattus norvegicus similar to ankyrin repeat-containing SOCS box protein 10 (predicted) (RGD1562922_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651767	ILMN_58487	WDR18_PREDICTED	XM_234885.3	XM_234885.3		314617	62651767	XM_234885.3	Wdr18_predicted	XP_234885.3	ILMN_1650918	0003800735	S	1146	TGGCACTCCACAGCGGCAGGCCCTTTCACAGAAGGTGCAGACAAGGAACA				7q11	PREDICTED: Rattus norvegicus WD repeat domain 18 (predicted) (Wdr18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642612-S	ILMN_51711	LOC361780	XM_342075.2	XM_342075.2		361780	62642612	XM_342075.2	LOC361780	XP_342076.2	ILMN_1352617	0001850601	S	1	TGAGGGCTTTTAGGCAAAATACGACTTTGCAGTTCTGTGGCTCCCTGGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610039K22 (LOC361780), mRNA.					
Rattus norvegicus	RefSeq	GI_62647115-S	ILMN_51150	LOC500096	XM_575447.1	XM_575447.1		500096	62647115	XM_575447.1	LOC500096	XP_575447.1	ILMN_1351392	0005700411	S	401	GGCACAGCAGTGCATGGCCTCCTCCCCTCTGCACAGAAAGGAAATTAGGA				4q22	PREDICTED: Rattus norvegicus similar to T cell receptor variable region:SUBUNIT=beta:ISOTYPE=8.3 (LOC500096), mRNA.					
Rattus norvegicus	RefSeq	GI_62650545-S	ILMN_276194	LOC684101	XM_001068928.1	XM_001068928.1		684101	109479069	XM_001068928.1	LOC684101	XP_001068928.1	ILMN_1368717	0006940603	S	632	AGAACGCAGCACGGGAACGGACTCGGGTGAAGACACTGCGTCAGGCCTTT					PREDICTED: Rattus norvegicus similar to transcription factor 23 (LOC684101), mRNA.					
Rattus norvegicus	RefSeq	GI_62649042-S	ILMN_54094	LOC500472	XM_575836.1	XM_575836.1		500472	62649042	XM_575836.1	LOC500472	XP_575836.1	ILMN_1354369	0004780020	S	1301	GGACATGCCAGGGGTTGGGGGACGTCTGGTCATTAGAGGCCCAATGGATA				5q24	PREDICTED: Rattus norvegicus similar to alpha-2u globulin PGCL4 (LOC500472), mRNA.					
Rattus norvegicus	RefSeq	GI_62658450	ILMN_290670	RGD1306873	NM_001037191.1	NM_001037191.1		304285	81295338	NM_001037191.1	RGD1306873	NP_001032268.1	ILMN_1650265	0004730048	S	3426	CAAGGGACAGGGCTGGGACTATGGCATTGGTGGAGGCTGGGACCACATCT	12	+	10746088-10746118:10746222-10746240	12p11	Rattus norvegicus similar to RIKEN cDNA 2210010N04 gene (RGD1306873), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124730	MGC124730
Rattus norvegicus	RefSeq	GI_62655108-S	ILMN_297574	ALS2CR11	NM_001024363.1	NM_001024363.1		501147	66730522	NM_001024363.1	Als2cr11	NP_001019534.1	ILMN_1348988	0001400048	S	1709	GAAAGGAAGAGGGCTAGTTTGGGCTCCTGAGAGTGGAAGTGAAAAGGTGG	9	-	57611603-57611652	9q31	Rattus norvegicus amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) (Als2cr11), mRNA.					
Rattus norvegicus	RefSeq	GI_47576598-S	ILMN_267093	OLR1667	NM_001000537.1	NM_001000537.1		364979	47576598	NM_001000537.1	Olr1667	NP_001000537.1	ILMN_1355388	0006400717	S	400	GTGCTCATGGGACACAGGGTATGTGTGGGGTTAGTAGCTGCCGCGTCTGT	19	-	26293624-26293673	19q11	Rattus norvegicus olfactory receptor 1667 (Olr1667), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr19-26298899-26297955_ORF; Olr1667	ratchr19-26298899-26297955_ORF; Olr1667
Rattus norvegicus	RefSeq	GI_18266721-S	ILMN_274310	SLC28A3	NM_080908.1	NM_080908.1		140944	18266721	NM_080908.1	Slc28a3	NP_543184.1	ILMN_1369304	0000520341	S	2055	GAGCTGCTGCAACCTGCTGAAACCACCAACGCTGAACTGTGGTTGGATCC	17	+	12042633-12042682	17p14	Rattus norvegicus solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 (Slc28a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, into, out of, within or between cells [goid 15860] [evidence ISS]; The directed movement of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, into, out of, within or between cells [goid 15860] [evidence IEA]; The directed movement of a pyrimidine nucleoside, a pyrimidine base covalently bonded to a ribose or deoxyribose sugar, into, out of, within or between cells [goid 15864] [evidence ISS]; The directed movement of a pyrimidine nucleoside, a pyrimidine base covalently bonded to a ribose or deoxyribose sugar, into, out of, within or between cells [goid 15864] [evidence IEA]	Interacting selectively with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose [goid 1882] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: (pyrimidine nucleoside or adenine)(out) + Na+(out) = (pyrimidine nucleoside or adenine)(in) + Na+(in) [goid 15389] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: (pyrimidine nucleoside or adenine)(out) + Na+(out) = (pyrimidine nucleoside or adenine)(in) + Na+(in) [goid 15389] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: purine(out) + Na+(out) = nucleoside(in) + Na+(in) [goid 15390] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: purine(out) + Na+(out) = nucleoside(in) + Na+(in) [goid 15390] [evidence IEA]	Cnt3	Cnt3
Rattus norvegicus	RefSeq	GI_62656773-S	ILMN_271971	TMEM100	NM_001017479.1	NM_001017479.1		497979	62945313	NM_001017479.1	Tmem100	NP_001017479.1	ILMN_1356288	0001850301	S	1235	ACGTCAGAAGGAAACAGAAACGTAGATGAGAACACAGATGACGCGGGGAC	10	+	78451908-78451957	10q26	Rattus norvegicus transmembrane protein 100 (Tmem100), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62649868-S	ILMN_51634	RGD1311870_PREDICTED	XM_216550.3	XM_216550.3		298563	109475679	XM_216550.3	RGD1311870_predicted	XP_216550.2	ILMN_1363595	0002190215	S	183	ACCCCAGGAGGAGGCAGAAACAACCATGGCTCCAGAGGTCCATCCCAACA	5	+	155370436-155370442:155374701-155374743	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930549C01 (predicted) (RGD1311870_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657307-S	ILMN_265725	GPRC5C	XM_001081664.1	XM_001081664.1		287805	109492154	XM_001081664.1	Gprc5c	XP_001081664.1	ILMN_1373134	0006110707	S	1394	CCCTGATGCACAAAGGCCCGTCTGAAGGTGCGTACGACGTCATCCTCCCA				10q32.2	PREDICTED: Rattus norvegicus G protein-coupled receptor, family C, group 5, member C, transcript variant 5 (Gprc5c), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62667511-S	ILMN_267033	RGD1562747_PREDICTED	XM_001054261.1	XM_001054261.1		292328	109462288	XM_001054261.1	RGD1562747_predicted	XP_001054261.1	ILMN_1353352	0006130672	S	820	GCACACAGTTCAGTAGGTGCTGTTCCCAGACTGCTCTGCCCTCAGGAAGG				Xq37	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110012L19 (predicted) (RGD1562747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648386-S	ILMN_302074	RGD1559669_PREDICTED	XR_007918.1	XR_007918.1		502890	109474171	XR_007918.1	RGD1559669_predicted		ILMN_1365367	0001980739	S	515	TAGCCGGCGGTCATGGGACCAACAGATTGAACTCTGGAAGATGGCTTTGC				4q42	PREDICTED: Rattus norvegicus similar to Slbp protein (predicted) (RGD1559669_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641732-S	ILMN_265089	CNIH2	NM_001025132.1	NM_001025132.1		361705	68341952	NM_001025132.1	Cnih2	NP_001020303.1	ILMN_1372279	0001410070	S	989	TGGAAGGGGTAGGACTTCCGGTCTTGTCCGTTTCAGGGGAATTTGGGCCC				1q43	Rattus norvegicus cornichon homolog 2 (Drosophila) (Cnih2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]		RGD1304930; Cnih3; MGC109307	RGD1304930; Cnih3; MGC109307
Rattus norvegicus	RefSeq	GI_27545395-S	ILMN_271303	GCNT3	NM_173312.1	NM_173312.1		286976	27545395	NM_173312.1	Gcnt3	NP_775434.1	ILMN_1355595	0001230278	S	1771	ATACTGTTACTTGGGAAAGTGACGGAGGGGACATGTGGCCAGGGACTCTG	8	-	74470752-74470801	8q24	Rattus norvegicus glucosaminyl (N-acetyl) transferase 3, mucin type (Gcnt3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,3-N-acetyl-D-galactosaminyl-R = UDP + beta-D-galactosyl-1,3-(N-acetyl-beta-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R [goid 3829] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,6-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R [goid 8109] [evidence IDA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,6-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R [goid 8109] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	beta-16-N-acetylglucosaminyltransferase; dI/C2/C4GnT	beta-16-N-acetylglucosaminyltransferase; dI/C2/C4GnT
Rattus norvegicus	RefSeq	GI_41054867-S	ILMN_275537	FPGT	NM_199494.1	NM_199494.1		310935	41054867	NM_199494.1	Fpgt	NP_955788.1	ILMN_1369466	0000360324	S	1536	CTCTGGAAGTAAGAGGAACCTGAGCCTGTGGACTGCACGGATTTTCCCTG	2	-	252879055-252879104	2q45	Rattus norvegicus fucose-1-phosphate guanylyltransferase (Fpgt), mRNA.					
Rattus norvegicus	RefSeq	GI_62643911-S	ILMN_48536	LOC310677	XM_227454.3	XM_227454.3		310677	62643911	XM_227454.3	LOC310677	XP_227454.3	ILMN_1373232	0004560451	S	4918	TGGCACAGTGAGTCCAGCAGCCAGATCCTCTGAAAGCCTAGCTGACCAGG				2q34	PREDICTED: Rattus norvegicus similar to zinc finger protein Cezanne; cellular zinc finger anti-NF-kappaB Cezanne (predicted) (LOC310677), mRNA.					
Rattus norvegicus	RefSeq	GI_47577146-S	ILMN_293295	OLR752	NM_001000367.1	NM_001000367.1		296004	47577146	NM_001000367.1	Olr752	NP_001000367.1	ILMN_1368370	0003940398	S	189	GGCCAACCTGTCTTTGAATGATGTGTGGGTCTCCTCCACCACAGTTCCCA	3	+	96894473-96894522	3q34	Rattus norvegicus olfactory receptor 752 (Olr752), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr752; ratchr3-96790713-96791645_ORF	Olr752; ratchr3-96790713-96791645_ORF
Rattus norvegicus	RefSeq	GI_62641938-S	ILMN_66015	LOC502370	XM_577843.1	XM_577843.1		502370	62641938	XM_577843.1	LOC502370	XP_577843.1	ILMN_1350820	0000780019	S	542	GGTGTTGCTATGCATGCTCCATGGTGACAATAGTGGGGTCCAGTTGGCCC				1q41	PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (LOC502370), mRNA.					
Rattus norvegicus	RefSeq	GI_62665511-S	ILMN_290775	LOC681492	XM_001057095.1	XM_001057095.1		681492	109509090	XM_001057095.1	LOC681492	XP_001057095.1	ILMN_1348960	0006520369	S	789	GGAACAGCCAAGTGGCTCAACAGGAACTCCTTCAGTGACTAATCGGATGA					PREDICTED: Rattus norvegicus similar to coiled-coil domain containing 7 (LOC681492), mRNA.		The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394141-S	ILMN_56438	RAB27A	NM_017317.2	NM_017317.2		50645	70778972	NM_017317.2	Rab27a	NP_059013.1	ILMN_1374920	0003450113	S	694	CAGTGAGGAGAAGGAGAAGGGGTTATGCGGCTGTTGAGACACCGAGTGAG	8	+	77859102-77859138:77859139-77859151	8q24	Rattus norvegicus RAB27A, member RAS oncogene family (Rab27a), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence IEA]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence ISS]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence IEA]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence ISS]; The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a cytotoxic T cell [goid 43316] [evidence IEA]; The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a cytotoxic T cell [goid 43316] [evidence ISS]; The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a natural killer cell [goid 43320] [evidence IEA]; The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a natural killer cell [goid 43320] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process by which a pigment granule is transported to, and/or maintained in, a specific location within the cell [goid 51875] [evidence ISS]; The directed movement of pigment granules into, out of, within or between cells [goid 51904] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a class V myosin; myosin V is a dimeric molecule involved in intracellular transport [goid 31489] [evidence IEA]; Interacting selectively with a class V myosin; myosin V is a dimeric molecule involved in intracellular transport [goid 31489] [evidence ISS]	MGC112618; ram	MGC112618; ram
Rattus norvegicus	RefSeq	GI_62649436-S	ILMN_292014	STIL_PREDICTED	XM_001069563.1	XM_001069563.1		313506	109477036	XM_001069563.1	Stil_predicted	XP_001069563.1	ILMN_1367080	0003450711	S	1196	GGAACCTGAGTTTTATGAGTGCCTGCCTTGTGACAGTAGGACACCCGAGC				5q36	PREDICTED: Rattus norvegicus Scl/Tal1 interrupting locus (predicted) (Stil_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880936-S	ILMN_285124	NHLH1_PREDICTED	XM_001055226.1	XM_001055226.1		289230	109499060	XM_001055226.1	Nhlh1_predicted	XP_001055226.1	ILMN_1375013	0001240161	S	403	TTAGAGCTCGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGCCGTGA				13q24	PREDICTED: Rattus norvegicus nescient helix loop helix 1 (predicted) (Nhlh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666678-S	ILMN_66643	RGD1566355_PREDICTED	XM_235722.4	XM_235722.4		315362	109510557	XM_235722.4	RGD1566355_predicted	XP_235722.4	ILMN_1370241	0000780112	S	2043	CTTACTTCCCTGGGAGGAGGGTCAGTGCAGAAGATGGCCTCAAGCATGAG	X	-	34505216-34505265	Xq14	PREDICTED: Rattus norvegicus similar to cell division cycle 2-like 1 (predicted) (RGD1566355_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662467-S	ILMN_274650	EDG4_PREDICTED	XM_001069955.1	XM_001069955.1		361131	109503989	XM_001069955.1	Edg4_predicted	XP_001069955.1	ILMN_1351763	0006370619	S	1307	ATTGAGTGGCTGGCAGTGGAGTGTTCGCCTGGGGCTTGTTCTGAGCACCC				16p14	PREDICTED: Rattus norvegicus endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 4 (predicted) (Edg4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650171-S	ILMN_67584	LOC298684	XM_233715.3	XM_233715.3		298684	62650171	XM_233715.3	LOC298684	XP_233715.3	ILMN_1361606	0002260066	S	855	ATCAGTTCTAACCATTCACCCGCGTGCGGACCCGCTTATGGTAGCCCCTC					PREDICTED: Rattus norvegicus similar to Mrpl20 protein (LOC298684), mRNA.					
Rattus norvegicus	RefSeq	GI_62642576-S	ILMN_269035	ZDHHC14	NM_001039343.1	NM_001039343.1		499014	86129581	NM_001039343.1	Zdhhc14	NP_001034432.1	ILMN_1367609	0002370402	S	2003	ACTCCCCTACTTCAGAGCGAGCCCAGCCTCACCAGCGAAGAGCTGCATAT				1q11	Rattus norvegicus zinc finger, DHHC domain containing 14 (Zdhhc14), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	DHHC14; Dhhc14	DHHC14; Dhhc14
Rattus norvegicus	RefSeq	GI_62638515-S	ILMN_269035	ZDHHC14	NM_001039343.1	NM_001039343.1		499014	86129581	NM_001039343.1	Zdhhc14	NP_001034432.1	ILMN_1352508	0005220594	S	1271	CTGGAAAGGCAAATAGACATCGCCAACGGCACCAGTTCAGGGGGCTACCG	1	+	40666632-40666647:40701614-40701647	1q11	Rattus norvegicus zinc finger, DHHC domain containing 14 (Zdhhc14), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	DHHC14; Dhhc14	DHHC14; Dhhc14
Rattus norvegicus	RefSeq	GI_62647495-S	ILMN_298864	PIGY	NM_001024370.1	NM_001024370.1		502782	66730544	NM_001024370.1	Pigy	NP_001019541.1	ILMN_1359173	0000450039	S	239	GGCGCTGCTGCAGTTCCTTGTGTGTCCGCTCTCCAAGAAGCCGCTTAGAT	4	+	87256170-87256217:87257380-87257381	4q24	Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis, class Y (Pigy), mRNA.	An enzyme complex that catalyzes the transfer of GlcNAc from UDP-GlcNAc to an acceptor phosphatidylinositol, the first step in the production of GPI anchors for cell surface proteins. The complex contains PIG-A, PIG-C, PIG-H, PIG-Q, PIG-P, and DPM2 in human, and Eri1p, Gpi1p, Gpi2p, Gpi15p, Gpi19p, and Spt14p in budding yeast [goid 506] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 9893] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_20806142-A	ILMN_297013	LOC245960	NM_139101.1	NM_139101.1		245960	20806142	NM_139101.1	LOC245960	NP_620801.1	ILMN_1376832	0004060086	S	7046	GCTGCCTTTATGAGTGGGCAGCCTGACGAGAATCGGGCTCTTAGCTGCAG	7	+	128624874-128624923	7q34	Rattus norvegicus potassium channel regulator 1 (LOC245960), mRNA.				KCR1	KCR1
Rattus norvegicus	RefSeq	GI_62079264-S	ILMN_264785	MTERFD3	NM_001014265.2	NM_001014265.2		366856	70778769	NM_001014265.2	Mterfd3	NP_001014287.1	ILMN_1370145	0000670162	S	1211	CAGGCACTGCTGAAGGAAGGCATCTCCGTAGCTCAAATAAGAGCGTCACC	7	+	20723078-20723127	7q13	Rattus norvegicus MTERF domain containing 3 (Mterfd3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The process by which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA [goid 6353] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]		RGD1311836; MGC112659	RGD1311836; MGC112659
Rattus norvegicus	RefSeq	GI_62658624-S	ILMN_60182	RGD1561143_PREDICTED	XM_222031.4	XM_222031.4		304382	109495457	XM_222031.4	RGD1561143_predicted	XP_222031.4	ILMN_1366301	0007100746	S	875	AAGTTGGTGACCAGACACCCTGCATCCCACAACCTTCCATGGCTTCTCGC	12	-	19981082-19981131	12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (predicted) (RGD1561143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663129-S	ILMN_263049	HABP4_PREDICTED	XM_001059348.1	XM_001059348.1		361196	109505340	XM_001059348.1	Habp4_predicted	XP_001059348.1	ILMN_1366331	0006380301	S	2021	GTCTGAGATGGTGCTGAACTGGAAGGTTACTATTGTACTCCCCTCTGCAC				17p14	PREDICTED: Rattus norvegicus hyaluronic acid binding protein 4 (predicted) (Habp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660448-S	ILMN_48570	RGD1565738_PREDICTED	XM_223405.4	XM_223405.4		305342	109499683	XM_223405.4	RGD1565738_predicted	XP_223405.4	ILMN_1363783	0001050138	S	2162	CATGGAGTCCTGCAGAGGGCGCATCCTCAAATGGTCACTGTGTTGAAGGT	14	-	45122405-45122454	14p11	PREDICTED: Rattus norvegicus similar to mKIAA1413 protein (predicted) (RGD1565738_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660446-S	ILMN_48570	RGD1565738_PREDICTED	XM_223405.4	XM_223405.4		305342	109499683	XM_223405.4	RGD1565738_predicted	XP_223405.4	ILMN_1352919	0002570504	S	5152	ACTGGGAGAGGAAACCACAGCCAGGGAGGAGTTGCTCGAATCAAACCAGC	14	-	45097914-45097963	14p11	PREDICTED: Rattus norvegicus similar to mKIAA1413 protein (predicted) (RGD1565738_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639222	ILMN_67040	LOC499109	XM_574403.1	XM_574403.1		499109	62639222	XM_574403.1	LOC499109	XP_574403.1	ILMN_1651162	0002320524	S	1076	TGAATGTGAGCAGTGTGGGTCAGCCTTCAGACTCCAGTACCAACTTACTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA C030039L03 (LOC499109), mRNA.					
Rattus norvegicus	RefSeq	GI_62641522-S	ILMN_291969	RGD1306820_PREDICTED	XM_001054788.1	XM_001054788.1		309069	109463054	XM_001054788.1	RGD1306820_predicted	XP_001054788.1	ILMN_1361469	0002690128	S	3812	CACGGAAGATGATGCAGCCCTCCAGACCAACAAGCAGATTTACTCCCAGC				1q41	PREDICTED: Rattus norvegicus similar to erythroid differentiation-related factor 1 (predicted) (RGD1306820_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659438	ILMN_265509	GLRX2	NM_001013034.1	NM_001013034.1		114022	61556750	NM_001013034.1	Glrx2	NP_001013052.1	ILMN_1651186	0004150551	S	514	GGCCGACACTCACAGGCTTCACAAAGAAGGGAAATTGCTGCCTCTGGTTC	13	+	57575780-57575829	13q21	Rattus norvegicus glutaredoxin 2 (Glrx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16923937-S	ILMN_289123	TCEA2	NM_057098.1	NM_057098.1		29575	16923937	NM_057098.1	Tcea2	NP_476439.1	ILMN_1359504	0001660270	S	650	GAGCCGAATCTCTAACCTGAAAGATGCCAAGAACCCTGGCCTACGCCGGA	3	+	170837588-170837637	3q43	Rattus norvegicus transcription elongation factor A (SII), 2 (Tcea2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase [goid 6354] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence TAS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665697-S	ILMN_299159	LOC688862	XM_001068612.1	XM_001068612.1		688862	109509162	XM_001068612.1	LOC688862	XP_001068612.1	ILMN_1371885	0002370110	S	1239	CTTCGCTCACACGACATACAAGGGCTCCTGGAACGAGCGCACCACTTACG	20	-	5380042-5380091	20p12	PREDICTED: Rattus norvegicus similar to inositol hexaphosphate kinase 3 (LOC688862), mRNA.					
Rattus norvegicus	RefSeq	GI_51591902-A	ILMN_267928	KRT15	NM_001004022.2	NM_001004022.2		287700	75832145	NM_001004022.2	Krt15	NP_001004022.1	ILMN_1376845	0003360039	S	1322	AGGAGGCAGCAGCGGCGGTGGCAGCAATTTCCACATCAGCGTGGAGGAAT	10	-	89072201-89072250	10q32.1	Rattus norvegicus keratin 15 (Krt15), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]	Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662855-S	ILMN_286573	AGPAT6	XM_001072707.1	XM_001072707.1		290843	109504412	XM_001072707.1	Agpat6	XP_001072707.1	ILMN_1369711	0001400438	S	2502	CTGCTGTCCTCTAACCAGAGTGCTGCTGGCTGGGGCTCCTTGGGACAAAA				16q12.5	PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) (Agpat6), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The developmental process, independent of morphogenetic (shape) change, that is required for a glandular epithelial cell to attain its fully functional state. A glandular epithelial cell is a columnar/cuboidal epithelial cell is a cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland [goid 2071] [evidence ISS]; The developmental process, independent of morphogenetic (shape) change, that is required for a glandular epithelial cell to attain its fully functional state. A glandular epithelial cell is a columnar/cuboidal epithelial cell is a cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland [goid 2071] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence ISS]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence ISS]; The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; The chemical reactions and pathways involving diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues. DAG is a normal intermediate in the biosynthesis of phosphatidyl phospholipids and is released from them by phospholipase C activity. DAG from phosphatidyl inositol polyphosphates is important in signal transduction [goid 46339] [evidence ISS]; The chemical reactions and pathways involving diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues. DAG is a normal intermediate in the biosynthesis of phosphatidyl phospholipids and is released from them by phospholipase C activity. DAG from phosphatidyl inositol polyphosphates is important in signal transduction [goid 46339] [evidence IEA]	Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638228-S	ILMN_61675	LOC498979	XM_574268.1	XM_574268.1		498979	62638228	XM_574268.1	LOC498979	XP_574268.1	ILMN_1358594	0003850193	S	35	CATGGGCAGCACCCCGAGAGCGAACTTGAGCCTCGGGACCACAAAAATAG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498979), mRNA.					
Rattus norvegicus	RefSeq	GI_62648183-S	ILMN_268296	RGD1311164_PREDICTED	XM_001064550.1	XM_001064550.1		297607	109474255	XM_001064550.1	RGD1311164_predicted	XP_001064550.1	ILMN_1362559	0006200273	S	1807	ACATTCCAAAATGTGTCTGCTTCACAGACCAGAAGCAGCTCCCAGTGAGC				4q42	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 6, Wayne State University 163, expressed (predicted) (RGD1311164_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577588-S	ILMN_262824	OLR662	NM_001001060.1	NM_001001060.1		405948	47577588	NM_001001060.1	Olr662	NP_001001060.1	ILMN_1351587	0006590685	S	320	GTCTGGAAATCTTTATCCTCATTCTCATGGCTGTGGATCGCTATGTGGCC	3	-	72986082-72986131	3q24	Rattus norvegicus olfactory receptor 662 (Olr662), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr662	Olr662
Rattus norvegicus	RefSeq	GI_62645475-S	ILMN_276823	RGD1563222_PREDICTED	XM_001079515.1	XM_001079515.1		362175	109470417	XM_001079515.1	RGD1563222_predicted	XP_001079515.1	ILMN_1362291	0001340301	S	532	TCACTGGGGATGGCTTTGACTCCCAGCGCTATAAATTCCTGAAGGCGCTG				3q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930018P22 (predicted) (RGD1563222_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644107-S	ILMN_59523	NGFB_MAPPED	XM_227525.3	XM_227525.3		310738	109465361	XM_227525.3	Ngfb_mapped	XP_227525.3	ILMN_1362230	0003140040	S	770	CCAAGCACTGGAACTCATACTGCACCACGACTCACACCTTTGTCAAGGCG	2	+	197632648-197632697	2q34	PREDICTED: Rattus norvegicus nerve growth factor, beta (mapped) (Ngfb_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_56961638-S	ILMN_281650	GPSM3	NM_001003974.2	NM_001003974.2		406163	56961638	NM_001003974.2	Gpsm3	NP_001003974.1	ILMN_1371385	0000050403	S	1067	AAAAGGGAAAAGAGTAAGACGACTGTCCAGCGCTAGCACCCCCCACGCCC	20	-	4259994-4260043	20p12	Rattus norvegicus G-protein signalling modulator 3 (AGS3-like, C. elegans) (Gpsm3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	AGS4; Ng1; MGC108946; G18	AGS4; Ng1; MGC108946; G18
Rattus norvegicus	RefSeq	GI_62664970-S	ILMN_278377	VPS35_MAPPED	XM_001068608.1	XM_001068608.1		25479	109508534	XM_001068608.1	Vps35_mapped	XP_001068608.1	ILMN_1371855	0006290632	S	2800	GATGTGTTTACCCAGCACCTCCAGACACCTTCAGGACCTTAACTCACTGC				19q11	PREDICTED: Rattus norvegicus vacuolar protein sorting 35 (mapped) (Vps35_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62078728-S	ILMN_267359	CDKN2AIP	NM_001014000.1	NM_001014000.1		306455	62078728	NM_001014000.1	Cdkn2aip	NP_001014022.1	ILMN_1367761	0004280048	S	2050	ACTGTGATTCCCCAAGGTATCACTGCATCCAGTACCTGGGGTTTGAAGAG	16	+	47749294-47749300:47749301-47749343	16q11	Rattus norvegicus CDKN2A interacting protein (Cdkn2aip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]	MGC112660	MGC112660
Rattus norvegicus	RefSeq	GI_62653257-S	ILMN_66607	RGD1311723_PREDICTED	XM_343351.3	XM_343351.3		363018	109483067	XM_343351.3	RGD1311723_predicted	XP_343352.3	ILMN_1360056	0001190609	S	334	CTCATTTGGCTGAGGAGCTAAGGGCAGAATGGGAAGAAGCACAAAGCCAG	8	-	12150671-12150720	8q12	PREDICTED: Rattus norvegicus similar to KIAA1731 protein (predicted) (RGD1311723_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643245-S	ILMN_61327	CPA3	XM_342219.3	XM_342219.3		54242	109464653	XM_342219.3	Cpa3	XP_342220.3	ILMN_1370121	0004060068	S	790	AACACCGACAACCCATGCCTCAGTGTCTACAGGGGACCTGCACCAGAGTC	2	-	105382964-105383013	2q24	PREDICTED: Rattus norvegicus carboxypeptidase A3 (Cpa3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence IPI]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639286-S	ILMN_70355	LOC499114	XM_574409.1	XM_574409.1		499114	62639286	XM_574409.1	LOC499114	XP_574409.1	ILMN_1365736	0006550022	S	548	CGGCAGAGCCAAGAAAGAATCGACCAGAAGGGATTAAGGGCGGAGTCACG					PREDICTED: Rattus norvegicus similar to F-box only protein 27 (LOC499114), mRNA.					
Rattus norvegicus	RefSeq	GI_50657407-S	ILMN_262949	ECE2	NM_001002815.1	NM_001002815.1		408243	50657407	NM_001002815.1	Ece2	NP_001002815.1	ILMN_1364503	0006180397	S	1942	AATGGAGAGAGGCTCAACGGACTCCAGACCCTGGGGGAAAACATCGCCGA	11	-	82494711-82494760	11q23	Rattus norvegicus endothelin-converting enzyme 2 (Ece2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence TAS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence TAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658142	ILMN_52813	LOC498108	XM_579786.1	XM_579786.1		498108	62658142	XM_579786.1	LOC498108	XP_579786.1	ILMN_1650175	0001990603	S	1012	CAGCCCCCTATCTGGTTGCCAGGAAGATTTGCCATCATCCATTGCCCAGG					PREDICTED: Rattus norvegicus LOC498108 (LOC498108), mRNA.					
Rattus norvegicus	RefSeq	GI_62644632	ILMN_63631	LOC499738	XM_575072.1	XM_575072.1		499738	62644632	XM_575072.1	LOC499738	XP_575072.1	ILMN_1650761	0004570048	S	507	TCCAAGGCAGATGTTGGTCAACGACATAGGATAGCTGTGGGAAAATTCCC					PREDICTED: Rattus norvegicus similar to TDPOZ3 (LOC499738), mRNA.					
Rattus norvegicus	RefSeq	GI_62667074-S	ILMN_64933	LOC302405	XM_228576.2	XM_228576.2		302405	62667074	XM_228576.2	LOC302405	XP_228576.1	ILMN_1358330	0003290403	S	1326	TGGACCGTCATCTTCAGTGCCTGCAGAGTGCTCCTGTGTATCCATGGACC				Xq31	PREDICTED: Rattus norvegicus hypothetical LOC302405 (LOC302405), mRNA.					
Rattus norvegicus	RefSeq	GI_62718203-S	ILMN_47915	LOC501321	XM_576733.1	XM_576733.1		501321	62718203	XM_576733.1	LOC501321	XP_576733.1	ILMN_1349462	0003520451	S	1118	CAGTTGCAGGGACCCAGGCAAAGAGGGAATATTGGGGCAGAGTCCATGAG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501321), mRNA.					
Rattus norvegicus	RefSeq	GI_62658065-S	ILMN_285590	RTP4_PREDICTED	XM_001056345.1	XM_001056345.1		360733	109494618	XM_001056345.1	Rtp4_predicted	XP_001056345.1	ILMN_1368826	0004760239	S	729	TAGGAACAGGCCTTTTCAGGAAGTCAGAGAGCCCGGTGAAGCAGCATCAC				11q23	PREDICTED: Rattus norvegicus receptor transporter protein 4 (predicted) (Rtp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648177-S	ILMN_267823	KCNA6	XM_001067110.1	XM_001067110.1		64358	109474249	XM_001067110.1	Kcna6	XP_001067110.1	ILMN_1352612	0005890575	S	4440	GAGCTGCATTCGGCCTGCTCTAACTGCTAAGGTAACTCGGTGGTTCCCAC				4q42	PREDICTED: Rattus norvegicus potassium voltage gated channel, shaker related subfamily, member 6 (Kcna6), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665314-S	ILMN_65631	LOC498956	XM_574245.1	XM_574245.1		498956	62665314	XM_574245.1	LOC498956	XP_574245.1	ILMN_1365838	0005690093	S	1133	CACACCAGACTTTTCCCCAGAAACTATGAAAGCCAGAAGATCCTGGACAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498956), mRNA.					
Rattus norvegicus	RefSeq	GI_62655870-S	ILMN_298156	SOX8_PREDICTED	XM_001060343.1	XM_001060343.1		302993	109490408	XM_001060343.1	Sox8_predicted	XP_001060343.1	ILMN_1357652	0006650504	S	2030	GGGACCGATGTGCGATGGAGGCTTTCTCATTACCACAGGTCTTTCCCAGC				10q12	PREDICTED: Rattus norvegicus SRY-box containing gene 8 (predicted) (Sox8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646677-S	ILMN_53292	LOC499978	XM_575332.1	XM_575332.1		499978	62646677	XM_575332.1	LOC499978	XP_575332.1	ILMN_1370353	0000540576	S	988	CTGAAAAGACGTGATGGAGAAGCTATCAGCTGGTGTGTTCAGACCTCTGC					PREDICTED: Rattus norvegicus similar to crystallin, zeta (quinone reductase)-like 1 (LOC499978), mRNA.					
Rattus norvegicus	RefSeq	GI_35215314-S	ILMN_292259	CCDC50	NM_182736.1	NM_182736.1		288022	35215314	NM_182736.1	Ccdc50	NP_877400.1	ILMN_1368724	0000540112	S	806	CAGCGATGGCCCCTGAGGATGTGGATCCCACCCACTTCACAAACCAGCAT	11	-	75304299-75304348	11q22	Rattus norvegicus coiled-coil domain containing 50 (Ccdc50), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	c3orf6	c3orf6
Rattus norvegicus	RefSeq	GI_62656362-S	ILMN_62422	TM4SF5_PREDICTED	XM_220569.4	XM_220569.4		303256	109488402	XM_220569.4	Tm4sf5_predicted	XP_220569.4	ILMN_1352217	0003060471	S	825	GTTGTGCGGAATACAGCTGGTGAATGCGACCTTGGGCGTGTTGTGTGGCG	10	+	57355558-57355607	10q24	PREDICTED: Rattus norvegicus transmembrane 4 superfamily member 5 (predicted) (Tm4sf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576276-S	ILMN_282666	OLR1295	NM_001000598.1	NM_001000598.1		367065	47576276	NM_001000598.1	Olr1295	NP_001000598.1	ILMN_1368853	0001580040	S	291	CCCTGGATGCTTGGCTCAGCTCTACTTCTTCATCATTTTTGGGGCTGCAG	8	-	41681365-41681414	8q22	Rattus norvegicus olfactory receptor 1295 (Olr1295), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1295	Olr1295
Rattus norvegicus	RefSeq	GI_62654618-I	ILMN_66881	SATB1_PREDICTED	XM_576500.1	XM_576500.1		316164	62654618	XM_576500.1	Satb1_predicted	XP_576500.1	ILMN_1375777	0000520348	S	2077	CTAGAGGCGTTTTCTTACCAAGCCTGCTGACCCCTGCACCATGGCCCCAT				9q11	PREDICTED: Rattus norvegicus special AT-rich sequence binding protein 1 (predicted) (Satb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657541-S	ILMN_271756	RGD1308321_PREDICTED	XM_001063334.1	XM_001063334.1		288354	109493752	XM_001063334.1	RGD1308321_predicted	XP_001063334.1	ILMN_1360574	0005690050	S	2132	TTCTGGAATGAACTTGCAGAGGAGATGTGCCGGCTTAGACTCCAAAAGGG				11p12	PREDICTED: Rattus norvegicus hypothetical LOC288354 (predicted) (RGD1308321_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758507-S	ILMN_273005	PDE6H	NM_053688.1	NM_053688.1		114248	16758507	NM_053688.1	Pde6h	NP_446140.1	ILMN_1369779	0004150707	S	80	AGCAGAGGCAGACGCGACAGTTCAAGAGCAAGCCTCCCAAGAAAGGGGTG	4	+	174009939-174009988	4q43	Rattus norvegicus phosphodiesterase 6H, cGMP-specific, cone, gamma (Pde6h), mRNA.		The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity [goid 45742] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate) [goid 30553] [evidence IEA]	Pde6g	Pde6g
Rattus norvegicus	RefSeq	GI_27718096-S	ILMN_55101	RGD1565358_PREDICTED	XM_235062.2	XM_235062.2		314759	109480494	XM_235062.2	RGD1565358_predicted	XP_235062.1	ILMN_1358223	0002970600	S	214	AGGATCGCCCTCATGCCACTCCTCCAGGCAGAGAAGGACCGCAGAACCCT	7	+	32937878-32937927	7q13	PREDICTED: Rattus norvegicus similar to genes associated with retinoid-IFN-induced mortality 19 (predicted) (RGD1565358_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659911-S	ILMN_275110	EPRS	NM_001024238.1	NM_001024238.1		289352	66793365	NM_001024238.1	Eprs	NP_001019409.1	ILMN_2038894	0005720187	S	4107	GGAGGCGGAGTCTAAACTGAAAGGGGTTTTGGAAGACATCCAGCTTAACC	13	+	101439618-101439667	13q26	Rattus norvegicus glutamyl-prolyl-tRNA synthetase (Eprs), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA [goid 6424] [evidence IEA]; The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6433] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu) [goid 4818] [evidence IEA]; Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro) [goid 4827] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641806-S	ILMN_59518	PLCB3	XM_342005.2	XM_342005.2		29322	62641806	XM_342005.2	Plcb3	XP_342006.1	ILMN_1371818	0000870601	S	3836	GGCCACAAGACTGGGTGGGCACTGGGCTGTGGGTAGAAGACACTAATACT				1q43	PREDICTED: Rattus norvegicus phospholipase C, beta 3 (Plcb3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence NAS]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IDA]; Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate [goid 4629] [evidence TAS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence NAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648725-S	ILMN_266759	RGD1307395	XM_001060221.1	XM_001060221.1		297942	109474685	XM_001060221.1	RGD1307395	XP_001060221.1	ILMN_1374578	0003940671	S	3501	CGGCTTAATGAATAGTAGGCATTTGCCAAGTGTCCAGCTGCTCCAGGGTC	5	+	36624752-36624801	5q21	PREDICTED: Rattus norvegicus similar to SR rich protein (RGD1307395), mRNA.					
Rattus norvegicus	RefSeq	GI_56090458-S	ILMN_288152	CNDP1	NM_001007687.1	NM_001007687.1		307212	56090458	NM_001007687.1	Cndp1	NP_001007688.1	ILMN_1363987	0000610044	S	2248	GTGCACCCGCCATTCTACCAGCAACATTCACCCCAATGGAATTTCACGCC	18	-	81161024-81161073	18q12.3	Rattus norvegicus carnosine dipeptidase 1 (metallopeptidase M20 family) (Cndp1), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	MGC93742	MGC93742
Rattus norvegicus	RefSeq	GI_62653671-S	ILMN_64819	LOC500999	XM_580146.1	XM_580146.1		500999	62653671	XM_580146.1	LOC500999	XP_580146.1	ILMN_1368509	0001410725	S	383	CTCGGTGCTTCAACCTCAACCGGTCTCCAGCTTACACTCCTCAAGACTGG					PREDICTED: Rattus norvegicus LOC500999 (LOC500999), mRNA.					
Rattus norvegicus	RefSeq	GI_62650236-S	ILMN_266774	RGD1311424_PREDICTED	XM_001064113.1	XM_001064113.1		362685	109478959	XM_001064113.1	RGD1311424_predicted	XP_001064113.1	ILMN_1373950	0004560072	S	1203	AGACTTATCTTCCAATTGCCCAGGACCAACCTCTGCGGATCATGACTGAG				6q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38348 (predicted) (RGD1311424_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638676-S	ILMN_61408	RGD1310304_PREDICTED	XM_218006.4	XM_218006.4		308218	109457903	XM_218006.4	RGD1310304_predicted	XP_218006.3	ILMN_1368440	0002940551	S	4021	CCCGGAGGACTGAGCATAGTGTGTCCGGAGAGCTTGTACTGCTATGTCTG	1	+	54312633-54312682	1q12	PREDICTED: Rattus norvegicus similar to KIAA1838 protein (predicted) (RGD1310304_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648788-S	ILMN_269548	RGD1305158_PREDICTED	XM_001065324.1	XM_001065324.1		297971	109476321	XM_001065324.1	RGD1305158_predicted	XP_001065324.1	ILMN_1369677	0006110176	S	178	AAGAGAGAAACTTTGAAAACCCAGGCCTCCGAGGGACGCACCCAACAACC				5q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810030N24 (predicted) (RGD1305158_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865923-A	ILMN_286641	RSPH1	NM_001012176.1	NM_001012176.1		361818	58865923	NM_001012176.1	Rsph1	NP_001012176.1	ILMN_1376834	0006900242	S	872	TCAGGCAGGAGAGCCAGGAGAACAGTTACGACTTAGACCAGGGAAACCCG	20	-	9633532-9633581	20p12	Rattus norvegicus radial spoke head 1 homolog (Chlamydomonas) (Rsph1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62653905-S	ILMN_285409	RGD1563550_PREDICTED	XM_001057115.1	XM_001057115.1		300834	109485001	XM_001057115.1	RGD1563550_predicted	XP_001057115.1	ILMN_1364208	0001050519	S	3091	GCCAAGGTGGAGCAGGCCGAAGAATTAGAGCTACAGTGTGTGGGAACGTC				8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38736 (predicted) (RGD1563550_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653904	ILMN_277197	RGD1565900_PREDICTED	XM_001053108.1	XM_001053108.1		300833	109484908	XM_001053108.1	RGD1565900_predicted	XP_001053108.1	ILMN_1651060	0001190605	S	32	TTTGCTGGGTGCCGGCTGCTTGCTGTCGAAATGGGCAAGCTTATGAAACC				8q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (predicted) (RGD1565900_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717974-S	ILMN_58664	LOC301966	XM_229476.3	XM_229476.3		301966	62717974	XM_229476.3	LOC301966	XP_229476.3	ILMN_1374303	0000430129	S	2	GTCTGATGGTCAAGGATCTCCCAAGCAGCACGGCAAACCAAGCAGTGCAG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC301966), mRNA.					
Rattus norvegicus	RefSeq	GI_27685440-S	ILMN_161764	LOC291794	XM_214621.1	XM_214621.1			27685440	XM_214621.1	LOC291794		ILMN_2040337	0006560685	S	741	CAAGCGGATCTCTTGAGTTCCAAGACAGCCTGGTCTACAGAGTCAGTTCC										
Rattus norvegicus	RefSeq	GI_62667494-S	ILMN_65550	LOC501654	XM_577049.1	XM_577049.1		501654	62667494	XM_577049.1	LOC501654	XP_577049.1	ILMN_1367912	0000630193	S	21	TGGAGAGAGAGCTTGCCACACGGACAGGTGGTCACTCCTGAGACAGCAGA					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC501654), mRNA.					
Rattus norvegicus	RefSeq	GI_62648240-S	ILMN_59199	LOC500343	XM_575695.1	XM_575695.1		500343	62648240	XM_575695.1	LOC500343	XP_575695.1	ILMN_1365109	0003440053	S	277	TCGAGGGCAGCACCCCGCAAGCGAACTTGAGCCTCGGGACCACAGAAATA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500343), mRNA.					
Rattus norvegicus	RefSeq	GI_61557099-S	ILMN_290369	PLEKHF1	NM_001013148.1	NM_001013148.1		308543	61557099	NM_001013148.1	Plekhf1	NP_001013166.1	ILMN_1361493	0001050563	S	1234	ATCTACCATGCAGATGCCACCACCTGGCCACTGGGTCGTGCCAAGCTGGA	1	-	90697457-90697506	1q22	Rattus norvegicus pleckstrin homology domain containing, family F (with FYVE domain) member 1 (Plekhf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650960-S	ILMN_63037	LOC503033	XM_578554.1	XM_578554.1		503033	62650960	XM_578554.1	LOC503033	XP_578554.1	ILMN_1371534	0001400717	S	438	CGTCGTGTGGCACTGATCTCCTCTAGTTTTTCTGGGGACACTGTGGGCTC					PREDICTED: Rattus norvegicus similar to viral envelope protein G7e (LOC503033), mRNA.					
Rattus norvegicus	RefSeq	GI_6981499-S	ILMN_58249	SAG	NM_013023.1	NM_013023.1		25539	6981499	NM_013023.1	Sag	NP_037155.1	ILMN_1361232	0005340348	S	1251	GATCGGTAGGAAACTGCTTGTAGTCCTGGTTGCCTTGTGGGAAACCCCTG				9q35	Rattus norvegicus retinal S-antigen (Sag), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 7600] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with an opsin, any of a group of hydrophobic, integral membrane glycoproteins located primarily in the disc membrane of rods or cones, involved in photoreception [goid 2046] [evidence IEA]; Interacting selectively with an opsin, any of a group of hydrophobic, integral membrane glycoproteins located primarily in the disc membrane of rods or cones, involved in photoreception [goid 2046] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence ISS]	SANTI; SAGMR	SANTI; SAGMR
Rattus norvegicus	RefSeq	GI_62655512-S	ILMN_51366	LOC367337	XM_346091.2	XM_346091.2		367337	62655512	XM_346091.2	LOC367337	XP_346092.2	ILMN_1350386	0006290520	S	294	GACAAGTCTTTAGAGAGCAGGGATGAGGAACAGGCGCCCAAATCCTTGCC					PREDICTED: Rattus norvegicus similar to Ddx11 protein (LOC367337), mRNA.					
Rattus norvegicus	RefSeq	GI_62663480-S	ILMN_57521	LOC306896	XM_225274.3	XM_225274.3		306896	62663480	XM_225274.3	LOC306896	XP_225274.3	ILMN_1358327	0004120731	S	2200	CAGCAGAGGAGAGCTGCCAAGGAGGCAGTGCTGAAATCTTCCAGGAGTCC					PREDICTED: Rattus norvegicus similar to OTTMUSP00000000621 (LOC306896), mRNA.					
Rattus norvegicus	RefSeq	GI_47577590-S	ILMN_267707	OLR528	NM_001000319.1	NM_001000319.1		295776	47577590	NM_001000319.1	Olr528	NP_001000319.1	ILMN_1371742	0005690592	S	410	CCCCAAGGCGCTGCCATGCTCTCATCACTGTGTCCTATATGATTGGAGCT	3	-	70280173-70280222	3q24	Rattus norvegicus olfactory receptor 528 (Olr528), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr528	Olr528
Rattus norvegicus	RefSeq	GI_62667252-S	ILMN_294305	RGD1559530_PREDICTED	XR_008613.1	XR_008613.1		308653	109512337	XR_008613.1	RGD1559530_predicted		ILMN_1361442	0005570044	S	1868	TGCCAGTCCCAAAGAGATACAAAAGGCCTTCACATCGTCGCCTGCACCCG				Xq34	PREDICTED: Rattus norvegicus similar to nuclear RNA export factor 2 (predicted) (RGD1559530_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649217-S	ILMN_63543	LOC497806	XM_579702.1	XM_579702.1		497806	62649217	XM_579702.1	LOC497806	XP_579702.1	ILMN_1354026	0000580112	S	3508	CGTCCTGCGTTTTGTATAAACTGAGATGCTCATATGCTTCCCCTTAGAAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_173309 (LOC497806), mRNA.					
Rattus norvegicus	RefSeq	GI_62644760-S	ILMN_288395	RGD1564440_PREDICTED	XM_001078103.1	XM_001078103.1		362085	109469610	XM_001078103.1	RGD1564440_predicted	XP_001078103.1	ILMN_1351852	0000360068	S	426	GGCACATGTGGCAGGGCGATGTTCTGCAGGTAACCCTTGCGAATCAGATT				3p13	PREDICTED: Rattus norvegicus similar to helix-loop-helix protein NOHLH (predicted) (RGD1564440_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647594-S	ILMN_50983	LOC502838	XM_578338.1	XM_578338.1		502838	62647594	XM_578338.1	LOC502838	XP_578338.1	ILMN_1351235	0002900497	S	312	GGCAGCGGATCTGGGACAGAATTTACCCTTTCTATTGAACATGTCCAGCC				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa variable region (LOC502838), mRNA.					
Rattus norvegicus	RefSeq	GI_62664388-S	ILMN_48497	LOC302297	XM_228410.3	XM_228410.3		302297	62664388	XM_228410.3	LOC302297	XP_228410.3	ILMN_1374187	0000580014	S	532	CAGAGATGGTGAAGCTGTGTGCAGTGTCTGCCTACTTTGCTGCGAACCAG				18q11	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor interacting protein 2 (arfaptin 2) (LOC302297), mRNA.					
Rattus norvegicus	RefSeq	GI_62666058-S	ILMN_56163	HNRPH3_PREDICTED	XM_342131.3	XM_342131.3		361838	109509388	XM_342131.3	Hnrph3_predicted	XP_342132.3	ILMN_1371461	0004200706	S	973	GGTGGAGGCAGTGGAGGTTACTATGGGCAAGGTGGAATGAGTGGAGGTGG	20	-	25354114-25354163	20p11	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted) (Hnrph3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651994-S	ILMN_69946	RGD1560606_PREDICTED	XM_235023.4	XM_235023.4		314713	109480440	XM_235023.4	RGD1560606_predicted	XP_235023.4	ILMN_1356752	0002470603	S	8327	AGTTCCTGCGGCCCGGCTACAAGGCCAAGAGACAAAAGTCCCACAGCCTC	7	-	25419996-25420045	7q13	PREDICTED: Rattus norvegicus similar to down-regulated in metastasis (predicted) (RGD1560606_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394182-S	ILMN_276442	RGS4	NM_017214.1	NM_017214.1		29480	8394182	NM_017214.1	Rgs4	NP_058910.1	ILMN_1357095	0001690138	S	2734	GAGTGTGTCTTCAGTTGTATTTGCCATCGCTCTTTGGTCTGGCGAGCCTG	13	-	85534015-85534064	13q24	Rattus norvegicus regulator of G-protein signaling 4 (Rgs4), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648136	ILMN_54003	LOC500314	XM_580057.1	XM_580057.1		500314	62648136	XM_580057.1	LOC500314	XP_580057.1	ILMN_1650632	0000630167	S	523	GGTCCAGGCTAGAGGCTTAGAGACCGCCATAGTGGTACCCAGATAGGACC					PREDICTED: Rattus norvegicus LOC500314 (LOC500314), mRNA.					
Rattus norvegicus	RefSeq	GI_16758135-S	ILMN_295061	KCNK9	NM_053405.1	NM_053405.1		84429	16758135	NM_053405.1	Kcnk9	NP_445857.1	ILMN_1374794	0001580286	S	1439	TTCCGACCTTTCCAGCCAGGCAGAGCTGTCCAAAGGGCAAATAGAGGCCC	7	-	110232535-110232584	7q34	Rattus norvegicus potassium channel, subfamily K, member 9 (Kcnk9), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Task3	Task3
Rattus norvegicus	RefSeq	GI_34852696-S	ILMN_276266	RGD1559810_PREDICTED	XM_001058916.1	XM_001058916.1		365577	109510163	XM_001058916.1	RGD1559810_predicted	XP_001058916.1	ILMN_1374591	0004150731	S	354	CCTTCACGGGAGCAATAGGGTTGTGTGTGAGGGTGACAGTACATGGCAGC				20q11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1559810_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666756-S	ILMN_70417	LOC501547	XM_576949.1	XM_576949.1		501547	62666756	XM_576949.1	LOC501547	XP_576949.1	ILMN_1364446	0005080010	S	115	GGGGTTCAGAGCTAAACAAAAAATCACAGCTGAGAAATGCCGAATGGCTG					PREDICTED: Rattus norvegicus similar to Retrovirus-related POL polyprotein (LOC501547), mRNA.					
Rattus norvegicus	RefSeq	GI_62659739-S	ILMN_284324	RGD1560190_PREDICTED	XM_001054748.1	XM_001054748.1		364049	109499050	XM_001054748.1	RGD1560190_predicted	XP_001054748.1	ILMN_1374317	0000360053	S	1113	GGACGGCCACCAGGAAATGTCCAACTCTTGCCCTCACTTGGAGAACACAG				13q24	PREDICTED: Rattus norvegicus similar to SLAM family member 7 (predicted) (RGD1560190_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651730-A	ILMN_284892	MKNK2	NM_001011985.1	NM_001011985.1		299618	58865537	NM_001011985.1	Mknk2	NP_001011985.1	ILMN_1376280	0005720068	S	3328	CGTACCAGGTGAACTGACCTCCGGACTCCTTTCCCACCAACTGTCAACGC	7	+	10561004-10561053	7q11	Rattus norvegicus MAP kinase-interacting serine/threonine kinase 2 (Mknk2), mRNA.		Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643199-S	ILMN_58916	SAP2	XM_342209.2	XM_342209.2		266808	62643199	XM_342209.2	Sap2	XP_342210.2	ILMN_1369709	0006020358	S	4538	GAAACTGAGAGCAGAGAGAGACAGAAGCCTTGAGCTACAAAAGTAAGCCT				2q23	PREDICTED: Rattus norvegicus sodium channel associated protein 2 (Sap2), mRNA.					
Rattus norvegicus	RefSeq	GI_62640910-S	ILMN_60503	LOC365308	XM_344921.2	XM_344921.2		365308	62640910	XM_344921.2	LOC365308	XP_344922.2	ILMN_1356204	0000580195	S	755	CCAGAGCCGCAATACCCAGGGAGCCCAACAAAACCTGATATTCGACCACA				1q32	PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (LOC365308), mRNA.					
Rattus norvegicus	RefSeq	GI_40254732-S	ILMN_280888	TMPRSS2	NM_130424.2	NM_130424.2		156435	40254732	NM_130424.2	Tmprss2	NP_569108.2	ILMN_1353103	0000630079	S	2817	GGAGGGTCTCCCACCCAGGAAATAGTTGCCACTCCATGTAAAGAGTTCCC	11	-	37577288-37577337	11q12	Rattus norvegicus transmembrane protease, serine 2 (Tmprss2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656135-S	ILMN_50119	TRIM11_PREDICTED	XM_340806.2	XM_340806.2		360534	62656135	XM_340806.2	Trim11_predicted	XP_340807.1	ILMN_1355631	0001850433	S	963	CAGAGCTGCCGAGCCCCAGGACGTAACATGGACCCAGTATCTTAGAACAC				10q22	PREDICTED: Rattus norvegicus tripartite motif protein 11 (predicted) (Trim11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646372-S	ILMN_276488	NCOA5_PREDICTED	XM_001071075.1	XM_001071075.1		296372	109471327	XM_001071075.1	Ncoa5_predicted	XP_001071075.1	ILMN_1369748	0002510088	S	1656	ATCAGCCTCCAAACATTGTGGGACAGGCAGGGTCTGCTCGGAACATGGGC				3q42	PREDICTED: Rattus norvegicus nuclear receptor coactivator 5 (predicted) (Ncoa5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652911-S	ILMN_70294	TUBGCP6_PREDICTED	XM_343310.3	XM_343310.3		362980	109481171	XM_343310.3	Tubgcp6_predicted	XP_343311.3	ILMN_1370593	0002030671	S	5042	TGTGAGTTCAGAGCCCGTCTAGCTGTGGTGGGCGACCTGGAGGAGATTCA	7	-	127403922-127403971	7q34	PREDICTED: Rattus norvegicus tubulin, gamma complex associated protein 6 (predicted) (Tubgcp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665480-S	ILMN_50835	LOC502205	XM_577665.1	XM_577665.1		502205	62665480	XM_577665.1	LOC502205	XP_577665.1	ILMN_1350572	0005670195	S	1793	AGCTGGCGTTTTGGTCCTCAGGCGGTTGATCCCGAGTCCTTTAGAGCTGC					PREDICTED: Rattus norvegicus similar to WW domain-containing oxidoreductase isoform 2 (LOC502205), mRNA.					
Rattus norvegicus	RefSeq	GI_62648600-S	ILMN_291027	RGD1565372_PREDICTED	XM_001070230.1	XM_001070230.1		366307	109476098	XM_001070230.1	RGD1565372_predicted	XP_001070230.1	ILMN_1369116	0001240484	S	42	AGATGGGGACATCATCAATGCCTTGTGCTTTAGCCCCAACTGCTACTGGC				5q12	PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2 C (Ubiquitin-protein ligase C) (predicted) (RGD1565372_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648602-S	ILMN_291027	RGD1565372_PREDICTED	XM_001070230.1	XM_001070230.1		366307	109476098	XM_001070230.1	RGD1565372_predicted	XP_001070230.1	ILMN_1365856	0001780047	S	270	GGGGCATCACTGCGGAGGAGGCTCAGACAAGAGAAGACTGGTGAGCATAA				5q12	PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2 C (Ubiquitin-protein ligase C) (predicted) (RGD1565372_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663929	ILMN_289073	ARL5B	NM_001015031.1	NM_001015031.1		364788	62543550	NM_001015031.1	Arl5b	NP_001015031.1	ILMN_1650491	0001090050	S	932	ATCTCAGTCGGACGAGCATAACGTGTGACTATGTTGTAGCAGCTGGACTC	17	+	89147972-89148021	17q12.3	Rattus norvegicus ADP-ribosylation factor-like 5B (Arl5b), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109092; Arl8	MGC109092; Arl8
Rattus norvegicus	RefSeq	GI_62638256-S	ILMN_274854	OLIG3_PREDICTED	XM_001072910.1	XM_001072910.1		293012	109460498	XM_001072910.1	Olig3_predicted	XP_001072910.1	ILMN_1357307	0000520402	S	1860	CTGCATGCGGGGTTGGCTCTGTCTGTTATCCCTCAGCTCTGAAAACCCTC				1p12	PREDICTED: Rattus norvegicus oligodendrocyte transcription factor 3 (predicted) (Olig3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18158442-S	ILMN_302400	MMP16	NM_080776.1	NM_080776.1		65205	18158442	NM_080776.1	Mmp16	NP_542954.1	ILMN_1361318	0001580348	S	3150	GCCGTCCATTGGTCTGTCAGCAATACTCAGCGCAAAGCAGAGCGAGAAGC	5	+	32586227-32586276	5q13	Rattus norvegicus matrix metallopeptidase 16 (Mmp16), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Mt3-mmp	Mt3-mmp
Rattus norvegicus	RefSeq	GI_62651657-S	ILMN_52800	RGD1562342_PREDICTED	XM_576141.2	XM_576141.2		500762	109480144	XM_576141.2	RGD1562342_predicted	XP_576141.2	ILMN_1373920	0002190010	S	538	GCACTGCTAGGTGCTGCGGTACTGGTGGCCTGTGCTGACTACTTCTTGGA	7	-	2101914-2101963	7q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110012D08 (predicted) (RGD1562342_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718316-S	ILMN_53563	LOC363369	XM_343704.2	XM_343704.2		363369	62718316	XM_343704.2	LOC363369	XP_343705.2	ILMN_1374959	0001090731	S	1082	CAAACATCGTGAACGAAAACAGCACTTGAGAAACAACTTGGGGGACCACC					PREDICTED: Rattus norvegicus hypothetical LOC363369 (LOC363369), mRNA.					
Rattus norvegicus	RefSeq	GI_16758817-S	ILMN_282158	KCNH6	NM_053937.1	NM_053937.1		116745	16758817	NM_053937.1	Kcnh6	NP_446389.1	ILMN_1373511	0000130739	S	3209	CCAGCTCAGAACCACCTTCTGCCTCAAAAGCCCAGACCCAAGGCCAGGTT	10	+	95421505-95421554	10q32.1	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 6 (Kcnh6), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	 [goid 5242] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence TAS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Erg2	Erg2
Rattus norvegicus	RefSeq	GI_62652350-S	ILMN_64896	LRP12_PREDICTED	XM_235261.4	XM_235261.4		314941	109480684	XM_235261.4	Lrp12_predicted	XP_235261.3	ILMN_1350073	0002260390	S	3522	GGCAGGTCTGTCGTCGCTGCCACAGTGACTCTTTCTCCATAGCTTTGGGG	7	-	75458471-75458520	7q22	PREDICTED: Rattus norvegicus low density lipoprotein-related protein 12 (predicted) (Lrp12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866008-S	ILMN_50098	LOC360398	XM_346731.1	XM_346731.1		360398	34866008	XM_346731.1	LOC360398	XP_346732.1	ILMN_1369125	0005900341	S	2833	TCTACAAGGTGAGTTCCAAGACTACAGGTTACTACTGCATAGCCTGGGCT					PREDICTED: Rattus norvegicus hypothetical LOC360398 (LOC360398), mRNA.					
Rattus norvegicus	RefSeq	GI_47576382-S	ILMN_276201	OLR1558	NM_001000725.1	NM_001000725.1		404978	47576382	NM_001000725.1	Olr1558	NP_001000725.1	ILMN_1371453	0006450408	S	434	GCATGGGCATATTCATAGCCAGTAACCTGCATTCCTTGATTCATACAGGC	11	+	42395530-42395579	11q12	Rattus norvegicus olfactory receptor 1558 (Olr1558), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1558	Olr1558
Rattus norvegicus	RefSeq	GI_62653939-S	ILMN_55007	LOC503199	XM_578723.1	XM_578723.1		503199	62653939	XM_578723.1	LOC503199	XP_578723.1	ILMN_1353488	0004670086	S	753	TCCTTTGCTGAGAAACACCTGGGAGCCAAGGGAGCTGAGCCTCCAGACTG					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC503199), mRNA.					
Rattus norvegicus	RefSeq	GI_62665297-S	ILMN_64848	RGD1559505_PREDICTED	XM_574242.2	XM_574242.2		498953	109508158	XM_574242.2	RGD1559505_predicted	XP_574242.2	ILMN_1350160	0002510504	S	241	CTGGGCACCGGGCAGACCTTCTGTGTCGTGGTAGTCTCTTTCTTACGGGT	19	-	41806159-41806208	19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9030409E16 (predicted) (RGD1559505_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928905-S	ILMN_288103	RABGGTA	NM_031654.1	NM_031654.1		58983	13928905	NM_031654.1	Rabggta	NP_113842.1	ILMN_1349529	0000050204	S	2550	TTGAAAGCTGCAGGGAACAAGGCCTCCAGGGAGTGGCTCAAGGGTTTGGG	15	-	33861506-33861555	15p13	Rattus norvegicus Rab geranylgeranyl transferase, a subunit (Rabggta), mRNA.		The enzymatic addition of a geranylgeranyl moiety to a protein as a posttranslational modification [goid 18344] [evidence IEA]; The enzymatic addition of a geranylgeranyl moiety to a protein as a posttranslational modification [goid 18344] [evidence ISS]; The covalent attachment of a prenyl moiety to a protein amino acid [goid 18346] [evidence IEA]; The covalent attachment of a geranylgeranyl moiety to a protein amino acid [goid 18348] [evidence IDA]	Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family [goid 4663] [evidence IDA]; Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family [goid 4663] [evidence IEA]; Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family [goid 4663] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein [goid 8318] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649207-S	ILMN_63033	LOC366406	XM_345551.2	XM_345551.2		366406	62649207	XM_345551.2	LOC366406	XP_345552.2	ILMN_1374768	0002060279	S	47	CTGGTCAACCTGCTGTCTAGGATTCCTGAAACAAATGAGTCGACAGTCCC					PREDICTED: Rattus norvegicus similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) (LOC366406), mRNA.					
Rattus norvegicus	RefSeq	GI_56090633-S	ILMN_287715	ARCN1	NM_001007662.1	NM_001007662.1		300674	56090633	NM_001007662.1	Arcn1	NP_001007663.1	ILMN_1354803	0004590056	S	2938	GGCTGCAGGCAGTAGCAGTGGGAAGCAGTAAATGACAGTAGATGGCCTCC	8	-	47699822-47699871	8q22	Rattus norvegicus archain 1 (Arcn1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat [goid 48205] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94158	MGC94158
Rattus norvegicus	RefSeq	GI_62650495-S	ILMN_284431	RGD1305779_PREDICTED	XM_001073672.1	XM_001073672.1		313969	109479163	XM_001073672.1	RGD1305779_predicted	XP_001073672.1	ILMN_1351782	0001580500	S	1976	CTCACAGAGTCCTGTTTTCTGAGGGACTGAAGAAGAGGGAGGCAGGGAAG				6q15	PREDICTED: Rattus norvegicus similar to NSE1 (predicted) (RGD1305779_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577328-S	ILMN_271274	OLR714	NM_001000923.1	NM_001000923.1		405239	47577328	NM_001000923.1	Olr714	NP_001000923.1	ILMN_1357955	0002630026	S	15	AATTGTCACAGAATTTGTCCTGCTGGGCTTCACTCAGGATCCTGCTGGGC	3	-	74124439-74124488	3q24	Rattus norvegicus olfactory receptor 714 (Olr714), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr714	Olr714
Rattus norvegicus	RefSeq	GI_62651717-S	ILMN_264915	TMPRSS9_PREDICTED	XM_001076064.1	XM_001076064.1		314636	109481545	XM_001076064.1	Tmprss9_predicted	XP_001076064.1	ILMN_1368957	0007000463	S	2957	ACCCGGTACAGATCAGCAGTCGTATGTTGTGCGCAGGCTTCCCGCAGGGT				7q11	PREDICTED: Rattus norvegicus transmembrane serine protease 9 (predicted) (Tmprss9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656416-S	ILMN_65438	LOC363591	XM_577090.1	XM_577090.1		363591	62656416	XM_577090.1	LOC363591	XP_577090.1	ILMN_1354155	0003440402	S	24	CAAGGATGCCCCTTAGTCCCTGGTGTGCTGATGTGGGAGGTGATAGAACC				10q22	PREDICTED: Rattus norvegicus similar to Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome chain 13) (Proteasome component C10-II) (LOC363591), mRNA.					
Rattus norvegicus	RefSeq	GI_11067372-S	ILMN_296790	PHLPP	NM_021657.1	NM_021657.1		59265	11067372	NM_021657.1	Phlpp	NP_067689.1	ILMN_1362245	0005290110	S	6010	ACCTCGCCCATGTGCAGTGTGGGCCATTTGCTTAGTGTGCTTCTGTGCAG	13	+	12565594-12565643	13p13	Rattus norvegicus PH domain and leucine rich repeat protein phosphatase (Phlpp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Scop; Plekhe1	Scop; Plekhe1
Rattus norvegicus	RefSeq	GI_16758937-S	ILMN_274307	AP2M1	NM_053837.1	NM_053837.1		116563	16758937	NM_053837.1	Ap2m1	NP_446289.1	ILMN_1364100	0000610440	S	1487	AGCCCCTGAGTATAGGTCTGAACCGGCCACATCACAGTGGGACTGGTCAG	11	-	82585734-82585783	11q23	Rattus norvegicus adaptor-related protein complex 2, mu 1 subunit (Ap2m1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence TAS]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence TAS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Ap50; mu2; Clapm1; MGC105352	Ap50; mu2; Clapm1; MGC105352
Rattus norvegicus	RefSeq	GI_62648063-S	ILMN_50439	MARCH8_PREDICTED	XM_232293.4	XM_232293.4		312656	109472496	XM_232293.4	March8_predicted	XP_232293.4	ILMN_1358182	0004670100	S	1422	CATTGACCGCACAGCAGAGGAGATCAAGCAGGGTCAGGTGACAGGAATCC	4	+	152605728-152605771:152606084-152606089	4q42	PREDICTED: Rattus norvegicus membrane-associated ring finger (C3HC4) 8 (predicted) (March8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882247	ILMN_59281	LOC302457	XM_217578.2	XM_217578.2		302457	34882247	XM_217578.2	LOC302457	XP_217578.2	ILMN_1650613	0000060114	S	713	ATTAAGGACACGGCGCCCAAGGTGTGCAGTGGTGGAGAAAGATGAGCGGG					PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC302457), mRNA.					
Rattus norvegicus	RefSeq	GI_16758061-S	ILMN_273940	CXXC4	NM_053342.1	NM_053342.1		83824	16758061	NM_053342.1	Cxxc4	NP_445794.1	ILMN_1350191	0005270632	S	420	GAGGAAAAGGTGTGGGGTCTGCGTGCCCTGCAAGAGGCTCATCAACTGTG	2	+	231705979-231706028	2q43	Rattus norvegicus CXXC finger 4 (Cxxc4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]	The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Idax	Idax
Rattus norvegicus	RefSeq	GI_62641489-A	ILMN_285814	TSGA10IP	NM_001004278.2	NM_001004278.2		361707	78370156	NM_001004278.2	Tsga10ip	NP_001004278.2	ILMN_1376525	0004010458	S	1435	TAGAGGAGCTGAGGCGCAAGGAGCGACAGCGTTTTGCCGAGTACCAAGCA	1	-	208037647-208037684:208042852-208042863	1q43	Rattus norvegicus testis specific 10 interacting protein (Tsga10ip), mRNA.					
Rattus norvegicus	RefSeq	GI_78370156	ILMN_285814	TSGA10IP	NM_001004278.2	NM_001004278.2		361707	78370156	NM_001004278.2	Tsga10ip	NP_001004278.2	ILMN_1530526	0001050369	S	1747	GAAGACACCCTTCCCCAACCCTGGACTGAGAGAAAAATTAAATGCTTTAT	1	-	208036720-208036741:208036742-208036769	1q43	Rattus norvegicus testis specific 10 interacting protein (Tsga10ip), mRNA.					
Rattus norvegicus	RefSeq	GI_24475824-S	ILMN_292417	LOC246120	NM_139255.2	NM_139255.2		246120	24475824	NM_139255.2	LOC246120	NP_640348.1	ILMN_1350852	0001450167	S	1071	ATGTGTGTGAACTGATGGGGCTCCTGGTGTCACTACTGGCTGCGGGCCTA	12	+	37279697-37279746	12q16	Rattus norvegicus RDCR-0918-3 protein (LOC246120), mRNA.					
Rattus norvegicus	RefSeq	GI_62663911-S	ILMN_290909	RPP38	NM_001033063.1	NM_001033063.1		291317	74271852	NM_001033063.1	Rpp38	NP_001028235.1	ILMN_1369389	0000780735	S	642	GCTCCTGGTTCTAGTGTGTAAGTCAGTCAAGCCCGCCATCATCACCTCAC	17	+	86036438-86036487	17q12.3	Rattus norvegicus ribonuclease P/MRP 38 subunit (human) (Rpp38), mRNA.				MGC124666	MGC124666
Rattus norvegicus	RefSeq	GI_57527087-S	ILMN_271535	THNSL2	NM_001009658.1	NM_001009658.1		297332	57527087	NM_001009658.1	Thnsl2	NP_001009658.1	ILMN_1362122	0005270440	S	1586	CTTTTGCTGCTCTTCCAGGAGACCCAGTGCCCATGTCAGAAGACTCACAC	4	-	104329636-104329685	4q32	Rattus norvegicus threonine synthase-like 2 (S. cerevisiae) (Thnsl2), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins [goid 9088] [evidence IEA]; The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins [goid 9088] [evidence ISS]	Catalysis of the reaction: O-phospho-L-homoserine + H2O = L-threonine + phosphate [goid 4795] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]	MGC95104; Tsh2; Thnsl2	MGC95104; Tsh2; Thnsl2
Rattus norvegicus	RefSeq	GI_11560013	ILMN_52601	PTER	NM_022224.2	NM_022224.2		63852	61889076	NM_022224.2	Pter	NP_071560.2	ILMN_1650403	0003840239	S	701	CCGAGTACTGCAAGAAGCAGGGGCGGACATCTCTAAAACGGTCATGTCCC	17	+	87254057-87254106	17q12.3	Rattus norvegicus phosphotriesterase related (Pter), mRNA.		The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism [goid 9056] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rpr1; Rpr-1	Rpr1; Rpr-1
Rattus norvegicus	RefSeq	GI_62655765-S	ILMN_70222	RGD1309385_PREDICTED	XM_340760.3	XM_340760.3		360488	109487810	XM_340760.3	RGD1309385_predicted	XP_340761.1	ILMN_1365007	0001570537	S	2988	CTGGTGGCAGCAGCACCACCGAGAGTTGCCCACCTAGTGTCACATGATAC	10	-	13010161-13010210	10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E030034P13 (predicted) (RGD1309385_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928723-S	ILMN_294282	MCSP	NM_031536.1	NM_031536.1		24899	13928723	NM_031536.1	Mcsp	NP_113724.1	ILMN_1349304	0000870528	S	542	CTCAGGATAGGGGTGCTCAAACACAGCAGTCCCCTCAAGGTGGTCAAGGC	2	-	185570425-185570474	2q34	Rattus norvegicus mitochondrial capsule selenoprotein (Mcsp), mRNA.				Mcs	Mcs
Rattus norvegicus	RefSeq	GI_62664768-A	ILMN_275678	CDH16	NM_001012055.1	NM_001012055.1		307614	58865685	NM_001012055.1	Cdh16	NP_001012055.1	ILMN_1376508	0002060041	S	2603	CAGACAGTGTGCCCCTGAAGACAGCCGTGTGAGTGATCTAAGCAGCCCCA	19	+	289278-289309:289310-289327	19p14	Rattus norvegicus cadherin 16 (Cdh16), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865977-A	ILMN_293736	DPP10	NM_001012205.1	NM_001012205.1		363972	58865977	NM_001012205.1	Dpp10	NP_001012205.1	ILMN_1376925	0002810184	S	2328	CTTCAGTGATTGCCTAAAGGAAGAAGTATCCGTGCTGCCACAGGAACCAG				13q11	Rattus norvegicus dipeptidylpeptidase 10 (Dpp10), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]	DPPY	DPPY
Rattus norvegicus	RefSeq	GI_62659215-S	ILMN_284158	GLI2_PREDICTED	XM_001053566.1	XM_001053566.1		304729	109498509	XM_001053566.1	Gli2_predicted	XP_001053566.1	ILMN_1349126	0000610133	S	4512	CGCTCTACTACTATGGCCAGATCCACATGTATGAACAGAACGGAGGCTGC				13q11	PREDICTED: Rattus norvegicus GLI-Kruppel family member GLI2 (predicted) (Gli2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758239-S	ILMN_292759	ZP1	XM_001074922.1	XM_001074922.1		85271	109463562	XM_001074922.1	Zp1	XP_001074922.1	ILMN_2040201	0003850468	S	1564	ATGCCCTTCGGGGACAGGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCAC				1q43	PREDICTED: Rattus norvegicus zona pellucida glycoprotein 1 (Zp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_8394062-S	ILMN_271441	PSMA2	NM_017279.1	NM_017279.1		29669	8394062	NM_017279.1	Psma2	NP_058975.1	ILMN_1371256	0004230717	S	343	CGAGTAGCGTCTGTGATGCAAGAGTATACCCAGTCAGGTGGTGTTCGTCC	17	-	58738027-58738068:58740433-58740440	17q12.1	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 2 (Psma2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34867824-S	ILMN_68724	PKDREJ_PREDICTED	XM_235548.3	XM_235548.3		300124	109481133	XM_235548.3	Pkdrej_predicted	XP_235548.2	ILMN_1356265	0002350711	S	5975	CCACCCAGACCATCTTCTCCTACTGCGTGTCAGCCTTTCAGAACACAGAG	7	-	123821186-123821235	7q34	PREDICTED: Rattus norvegicus polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly, sea urchin homolog)-like (predicted) (Pkdrej_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652167-S	ILMN_300674	RGD1563543_PREDICTED	XR_009403.1	XR_009403.1		366887	109481954	XR_009403.1	RGD1563543_predicted		ILMN_1355401	0004920020	S	208	GCTGTCTGGGCCAAAGGAATAAGGAATGTTCCGTACCGCATTCAAGTACA				7q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1563543_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556782-S	ILMN_267669	CRYZL1	NM_001013044.1	NM_001013044.1		288256	61556782	NM_001013044.1	Cryzl1	NP_001013062.1	ILMN_1350259	0002450044	S	1628	CCTGTGGTAGTAGTGGCATAGCATTTGCATAGAGGGCTGGGGTGGTCGGG	11	-	31662277-31662326	11q11	Rattus norvegicus crystallin, zeta (quinone reductase)-like 1 (Cryzl1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650048-S	ILMN_60896	PIK3CD_PREDICTED	XM_345606.3	XM_345606.3		366508	109475856	XM_345606.3	Pik3cd_predicted	XP_345607.3	ILMN_1369889	0000870070	S	3006	CCAGTATCTCAAGGACTCTCTGGCACTAGGGAAGACGGAGGAAGAAGCAC	5	-	166737047-166737084:166738105-166738116	5q36	PREDICTED: Rattus norvegicus phosphatidylinositol 3-kinase catalytic delta polypeptide (predicted) (Pik3cd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576994-S	ILMN_282343	OLR272	NM_001000230.1	NM_001000230.1		293439	47576994	NM_001000230.1	Olr272	NP_001000230.1	ILMN_1372221	0001190524	S	729	CTGCACCTCCCACCTCGCAGCAGTCACTGTGTTCTATGGAACTGTTACAT	1	+	166019637-166019686	1q33	Rattus norvegicus olfactory receptor 272 (Olr272), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr272	Olr272
Rattus norvegicus	RefSeq	GI_62660282-S	ILMN_60732	RGD1562348_PREDICTED	XM_214012.4	XM_214012.4		289521	109499553	XM_214012.4	RGD1562348_predicted	XP_214012.4	ILMN_1375133	0006510487	S	10355	TGTGGAGCATGGAAATAGATTTGAGCCCTGTATCTCTGGGCTGAGAGAGG	14	+	19386916-19386965	14p22	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain protein 17 isoform b (predicted) (RGD1562348_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645647-S	ILMN_68881	RGD1310448_PREDICTED	XM_230493.4	XM_230493.4		311347	109468701	XM_230493.4	RGD1310448_predicted	XP_230493.4	ILMN_1362098	0001570037	S	10997	TGGTCAGAGGAGAGATCCTTCCCAGTGCTTGGGTCCTGCAGCCTGTTCTC	3	+	107491695-107491744	3q35	PREDICTED: Rattus norvegicus similar to mKIAA1300 protein (predicted) (RGD1310448_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649895-S	ILMN_52971	EIF4G3_PREDICTED	XM_216563.4	XM_216563.4		298573	109475702	XM_216563.4	Eif4g3_predicted	XP_216563.4	ILMN_1362874	0007000408	S	5268	TGCAAAGCAGCCATTGTCGCCGACTGTTCTACCTTCAGAGTGGACACTGC	5	+	156975860-156975878:156976648-156976678	5q36	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 4 gamma, 3 (predicted) (Eif4g3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377524-S	ILMN_294841	ASL	NM_021577.2	NM_021577.2		59085	31377524	NM_021577.2	Asl	NP_067588.2	ILMN_1372241	0000870372	S	1912	GGGACTTCCAAGCACCTACAACAAGGACTTACAGGAAGACAAGGAGGCTG	12	+	27718723-27718754:27718991-27719008	12q13	Rattus norvegicus argininosuccinate lyase (Asl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]	A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IDA]; A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence NAS]; The chemical reactions and pathways involving argininosuccinate, 2-(N(omega)-arginino)succinate, an intermediate in the ornithine-urea cycle, where it is synthesized from citrulline and aspartate [goid 53] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IDA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence ISS]; The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6526] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The pathway by which ammonia is processed and incorporated into a cell. In an energy-rich (glucose-containing), nitrogen-poor environment glutamine synthetase and glutamate synthase form an ammonia assimilatory cycle, in which ammonia is incorporated into L-glutamate to form L-glutamine, which then combines with alpha-ketoglutarate to regenerate L-glutamate. This ATP-dependent cycle is essential for nitrogen-limited growth and for steady-state growth with some sources of nitrogen [goid 19676] [evidence ISS]; The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine [goid 42450] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: N-(L-arginino)succinate = fumarate + L-arginine [goid 4056] [evidence IDA]; Catalysis of the reaction: N-(L-arginino)succinate = fumarate + L-arginine [goid 4056] [evidence IEA]; Catalysis of the reaction: N-(L-arginino)succinate = fumarate + L-arginine [goid 4056] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647091-S	ILMN_267066	ADCK2_PREDICTED	XM_001067637.1	XM_001067637.1		312258	109473315	XM_001067637.1	Adck2_predicted	XP_001067637.1	ILMN_1361404	0006590441	S	2210	TTCCTCCTCAAAGGGCCAGCATCCTTCCTGTGACTGTGGCAGTGGGCACA				4q22	PREDICTED: Rattus norvegicus aarF domain containing kinase 2 (predicted) (Adck2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651264-A	ILMN_265663	ANKRD9	NM_001012112.1	NM_001012112.1		314457	58865793	NM_001012112.1	Ankrd9	NP_001012112.1	ILMN_1376602	0002680139	S	1137	ATCGTAGGCCCAGCTCGATGTGAACTGCTAGGAGACCGGCTACGCTGGCA	6	-	135717778-135717827	6q32	Rattus norvegicus ankyrin repeat domain 9 (Ankrd9), mRNA.					
Rattus norvegicus	RefSeq	GI_62643210-S	ILMN_59521	HEY1	XM_342216.3	XM_342216.3		155437	109464609	XM_342216.3	Hey1	XP_342217.3	ILMN_1359573	0004920500	S	1677	ACACATTCCTTGGGGAAGCGCCTTCGGACATCACCCACACATCGCACACC	2	+	95176079-95176128	2q23	PREDICTED: Rattus norvegicus hairy/enhancer-of-split related with YRPW motif 1 (Hey1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656600-S	ILMN_58229	RGD1561602_PREDICTED	XM_573152.2	XM_573152.2		497961	109488596	XM_573152.2	RGD1561602_predicted	XP_573152.2	ILMN_1353516	0006110369	S	101	AGAAGGCGGCGGCTGAAGAGAAAGCGGTCACGGCGGCTGTGGAGAAAGCA	10	-	64804814-64804863	10q25	PREDICTED: Rattus norvegicus similar to nemo like kinase (predicted) (RGD1561602_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642557-S	ILMN_70100	RGD1308326_PREDICTED	XM_217671.4	XM_217671.4		308009	109460315	XM_217671.4	RGD1308326_predicted	XP_217671.2	ILMN_1364598	0005390731	S	1851	GGCCTTGATGTGCCAGGCATTGCTTTCCCACCAAATTAAACCCCCAGCCC	1	+	267440700-267440749	1q55	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810055E12 (predicted) (RGD1308326_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657299-S	ILMN_267426	RGD1562969_PREDICTED	XM_001081641.1	XM_001081641.1		287803	109492175	XM_001081641.1	RGD1562969_predicted	XP_001081641.1	ILMN_1357274	0002470519	S	1547	TCTTTGGCGGGAACCCACGATACGAGAACGTGCCACTCATCGGGAGAGGT				10q32.2	PREDICTED: Rattus norvegicus similar to Tweety homolog 2 (predicted) (RGD1562969_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649710-S	ILMN_283917	YARS	NM_001025696.1	NM_001025696.1		313047	71043617	NM_001025696.1	Yars	NP_001020867.1	ILMN_1374460	0004850341	S	2148	GAAAAGAAGGGAAAACAGCCTAGAGGTCTCCCAAGCTTCCCAAGGCTGGC	5	+	148378697-148378746	5q36	Rattus norvegicus tyrosyl-tRNA synthetase (Yars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6437] [evidence IEA]	Interacting selectively with transfer RNA [goid 49] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + L-tyrosyl-tRNA(Tyr) [goid 4831] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC112837	MGC112837
Rattus norvegicus	RefSeq	GI_62656984	ILMN_301871	KRT31	NM_001008817.1	NM_001008817.1		450228	57012433	NM_001008817.1	Krt31	NP_001008817.1	ILMN_1650289	0003190138	S	1186	CCTTGCACACCTTGTGTCCCACGTTCCCGCTGTGGGCCATGCAATAGCTT	10	-	88982503-88982552	10q32.1	Rattus norvegicus keratin 31 (Krt31), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_50811822-S	ILMN_281247	NENF	NM_001002851.1	NM_001002851.1		289380	50811822	NM_001002851.1	Nenf	NP_001002851.1	ILMN_1368039	0006620369	S	547	GAAGCTGGTTCTAGGGAGAGGTGGGGGGACAGGAGTTAAATGTCCCACGG	13	-	107368416-107368465	13q27	Rattus norvegicus neuron derived neurotrophic factor (Nenf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	SCIRP10; Spuf	SCIRP10; Spuf
Rattus norvegicus	RefSeq	GI_18266695-S	ILMN_284073	PDE7B	NM_080894.1	NM_080894.1		140929	18266695	NM_080894.1	Pde7b	NP_543170.1	ILMN_1373020	0002940528	S	1662	GTCTGCCCCCACCGAAAAGACTGGAAGTAAGAAAGGGGTGCCTCTGCCGT				1p12	Rattus norvegicus phosphodiesterase 7B (Pde7b), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence TAS]	Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence IDA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394442-S	ILMN_277809	TFPI	NM_017200.1	NM_017200.1		29436	8394442	NM_017200.1	Tfpi	NP_058896.1	ILMN_1373066	0001340114	S	693	TGGTGATTCCTCAGGCTACCAAAGCGCCCAGCCAATGGGACTATGATGGC	3	-	67656062-67656073:67664963-67665000	3q24	Rattus norvegicus tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) (Tfpi), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; A pathway of blood coagulation in which the earlier stages of the cascade are bypassed and the activation of factor X to factor Xa is effected by the combination of factor VIIa + thromboplastin; this second pathway occurs when tissue extracts are present in optimal amounts and is much more rapid than the intrinsic pathway [goid 7598] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62652515-S	ILMN_283789	RGD1566354_PREDICTED	XR_008362.1	XR_008362.1		366935	109482223	XR_008362.1	RGD1566354_predicted		ILMN_1354327	0001090129	S	510	GTATGATGGCATTAAGAAGATGACCCCAGTGAAGTAGGCATGGGCAGGCC				7q31	PREDICTED: Rattus norvegicus similar to Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) (predicted) (RGD1566354_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650674-S	ILMN_48712	NUBPL_PREDICTED	XM_216689.4	XM_216689.4		299008	109478165	XM_216689.4	Nubpl_predicted	XP_216689.3	ILMN_1357363	0006760504	S	977	GATTGAAGTCACCTCCAGAATGATTCCCAAGTGCCCTGGAACGTGTCCTG	6	+	72476003-72476025:72476026-72476052	6q23	PREDICTED: Rattus norvegicus nucleotide binding protein-like (predicted) (Nubpl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646509-S	ILMN_66315	LOC502700	XM_578199.1	XM_578199.1		502700	62646509	XM_578199.1	LOC502700	XP_578199.1	ILMN_1366110	0004200632	S	454	TCTGTGAAGAAGCACCAAGGGACAGAAAGGTGCCCCAACTCGGCCGCAGA					PREDICTED: Rattus norvegicus similar to large low complexity protein with proline/alanine-rich repeat (LOC502700), mRNA.					
Rattus norvegicus	RefSeq	GI_62656333-S	ILMN_272280	LOC497940	NM_001017476.1	NM_001017476.1		497940	62945307	NM_001017476.1	LOC497940	NP_001017476.1	ILMN_2040268	0004730678	S	1355	ACCTAGACCATGGAAAATGTAGTCACCTGGGGATGGGGTGAGGGTAACCG	10	-	56740809-56740853:56740854-56740858	10q24	Rattus norvegicus similar to RIKEN cDNA 2810408A11 (LOC497940), mRNA.		Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence IEA]; Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein [goid 43666] [evidence IEA]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661185	ILMN_271618	LOC688578	XM_001067487.1	XM_001067487.1		688578	109501423	XM_001067487.1	LOC688578	XP_001067487.1	ILMN_1650996	0002810465	S	813	TGAACACTGCAGCAGACGCTTGTCCATGGCCCAGAGCAGGACTACAGCTC	15	-	19808001-19808050	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2F protein (LOC688578), mRNA.					
Rattus norvegicus	RefSeq	GI_62649348-S	ILMN_271867	RGD1562192_PREDICTED	XR_007698.1	XR_007698.1		366419	109476799	XR_007698.1	RGD1562192_predicted		ILMN_1353700	0003840025	S	205	GCAGAATGATCACAGCGGCCTCTTCCAGGATATGCAGAAACCAGCTCCAG				5q33	PREDICTED: Rattus norvegicus similar to Ab2-162 (predicted) (RGD1562192_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653398-S	ILMN_50805	LOC300373	XM_235850.3	XM_235850.3		300373	62653398	XM_235850.3	LOC300373	XP_235850.3	ILMN_1364787	0000870377	S	530	CAAAGAGGCAAGGGCCACCTGTGGAGGGTTAGGTAAGACAGATACTGCCA					PREDICTED: Rattus norvegicus similar to methyl-CpG binding domain protein 3-like protein 2 (LOC300373), mRNA.					
Rattus norvegicus	RefSeq	GI_13928809-S	ILMN_269085	SART1	NM_031596.1	NM_031596.1		29678	13928809	NM_031596.1	Sart1	NP_113784.1	ILMN_1353310	0006380605	S	2289	CAGGGAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG	1	-	208026901-208026901:208026997-208027045	1q43	Rattus norvegicus squamous cell carcinoma antigen recognized by T cells (Sart1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cytotoxic T cell differentiation [goid 45585] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62657725-S	ILMN_283658	RGD1562771_PREDICTED	XM_001071507.1	XM_001071507.1		501767	109493956	XM_001071507.1	RGD1562771_predicted	XP_001071507.1	ILMN_1362707	0002850446	S	286	GACGGCTCTATGGGCGTTGGGTCCAACAGCTGCTGCTCCATGGATTATGG				11q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310057N15 (predicted) (RGD1562771_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869085-S	ILMN_293030	RGD1564372_PREDICTED	XM_344301.1	XM_344301.1		364258	34869098	XM_344301.1	RGD1564372_predicted	XP_344302.1	ILMN_1365545	0006550014	S	48	ACGCACTATGAGAAGACTCATCAATCTGCTCCGGCAGTCCCGGGCCTATT	15	+	5582294-5582343	15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (predicted) (RGD1564372_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869098-S	ILMN_293030	RGD1564372_PREDICTED	XM_344301.1	XM_344301.1		364258	34869098	XM_344301.1	RGD1564372_predicted	XP_344302.1	ILMN_1348991	0006510088	S	164	CGATCTTGATGGTCTGGATGGTGATCGCTGTGCTCCTCTTTCTACTGAGG	15	+	5582410-5582459	15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (predicted) (RGD1564372_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662792	ILMN_264086	DUSP26	NM_001012352.1	NM_001012352.1		306527	59891426	NM_001012352.1	Dusp26	NP_001012352.1	ILMN_1649980	0002640435	S	663	CATCCGCTACCTGGGTGTTGAAGCCCACGACTCGCCAGCCTTTGACATGA	16	-	64955322-64955371	16q12.3	Rattus norvegicus dual specificity phosphatase 26 (putative) (Dusp26), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC109288	MGC109288
Rattus norvegicus	RefSeq	GI_47576724-S	ILMN_287955	OLR174	NM_001001028.1	NM_001001028.1		405914	47576724	NM_001001028.1	Olr174	NP_001001028.1	ILMN_1369357	0001580750	S	758	CTTACGTGCCTGCTCTTTTTACTTTATTCACTCATCGTTTTGGAGGGCAC	1	-	162590169-162590218	1q33	Rattus norvegicus olfactory receptor 174 (Olr174), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr174	Olr174
Rattus norvegicus	RefSeq	GI_62645096-S	ILMN_64353	LOC497773	XM_579532.1	XM_579532.1		497773	62645096	XM_579532.1	LOC497773	XP_579532.1	ILMN_1371269	0002900338	S	2906	CCGACTCTGCTTAGTCAGCCACTTGGAAACAACCTCAACCGTGGGTTGCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031793 (LOC497773), mRNA.					
Rattus norvegicus	RefSeq	GI_62653077-S	ILMN_55853	RGD1308916_PREDICTED	XM_235661.3	XM_235661.3		315308	109481319	XM_235661.3	RGD1308916_predicted	XP_235661.1	ILMN_1362333	0002680022	S	1676	GCCCTTCAGACTCCGCTGCTCTCTGTAAACCAGAAGTGGGGAAAGCACCC	7	-	139184825-139184874	7q36	PREDICTED: Rattus norvegicus similar to TGF-beta induced apoptosis protein 12 (predicted) (RGD1308916_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651043	ILMN_284916	RGD1564089_PREDICTED	XM_001055592.1	XM_001055592.1		314304	109479631	XM_001055592.1	RGD1564089_predicted	XP_001055592.1	ILMN_1650419	0007000136	S	925	GATGGCCTCAAAGACATTGTGGATGCCCTGAACAATCCTCTGGAAGGAGC				6q31	PREDICTED: Rattus norvegicus similar to peroxisomal long chain acyl-CoA thioesterase Ia (predicted) (RGD1564089_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758093-A	ILMN_292019	FABP4	NM_053365.1	NM_053365.1		79451	16758093	NM_053365.1	Fabp4	NP_445817.1	ILMN_1376344	0005360373	S	278	CCCAGATGACAGGAAAGTGAAGAGCATCATAACCCTGGATGGTGGGGTCC	2	+	93539354-93539403	2q23	Rattus norvegicus fatty acid binding protein 4, adipocyte (Fabp4), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]	aP2; Albp	aP2; Albp
Rattus norvegicus	RefSeq	GI_62644859-S	ILMN_271223	LRRC8A	NM_001024782.1	NM_001024782.1		311846	67078455	NM_001024782.1	Lrrc8a	NP_001019953.1	ILMN_1372622	0003170609	S	2496	TGCTCAAGCGCAGCGGCCTGGTGGTAGAGGAGGACTTGTTCAGCACACTG	3	+	9305498-9305547	3p12	Rattus norvegicus leucine rich repeat containing 8 family, member A (Lrrc8a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651641-S	ILMN_52028	COQ10A_PREDICTED	XM_343138.3	XM_343138.3		362810	109480092	XM_343138.3	Coq10a_predicted	XP_343139.2	ILMN_1364723	0000730433	S	1479	GGCCGTTGCACACCAGATAAAAAGCAGGGCTGTAGCTGTCTCTGGGCCTG	7	-	1654463-1654512	7q11	PREDICTED: Rattus norvegicus coenzyme Q10 homolog A (yeast) (predicted) (Coq10a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664296-S	ILMN_283848	RGD1563066_PREDICTED	XR_008136.1	XR_008136.1		291662	109507157	XR_008136.1	RGD1563066_predicted		ILMN_1352011	0004570167	S	334	TTCTCCAATCATCGAACACAGGCGGATGAGCGAAGCACCTAACATGGCGC				18p11	PREDICTED: Rattus norvegicus similar to Ac2-210 (predicted) (RGD1563066_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648769-S	ILMN_267227	UBE2J1_PREDICTED	XM_001063852.1	XM_001063852.1		297961	109476292	XM_001063852.1	Ube2j1_predicted	XP_001063852.1	ILMN_1366442	0003190152	S	1512	CTGCGGTTGCTCACACCCACGCTGCTTTTCTACAGAGCGCAGTGCTTTTC				5q21	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2, J1 (predicted) (Ube2j1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52851374-S	ILMN_276905	TRPM8	NM_134371.2	NM_134371.2		171384	52851374	NM_134371.2	Trpm8	NP_599198.2	ILMN_1369309	0005270672	S	4062	GAGGAGCACAAAAATGTATGGAAACGGCCTCCCACTCACAGCCCTTGCTC	9	+	87278334-87278383	9q35	Rattus norvegicus transient receptor potential cation channel, subfamily M, member 8 (Trpm8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus [goid 9266] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature) [goid 50955] [evidence ISS]; The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature) [goid 50955] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]	CMR1	CMR1
Rattus norvegicus	RefSeq	GI_62664692-S	ILMN_55407	LOC307231	XM_225713.3	XM_225713.3		307231	62664692	XM_225713.3	LOC307231	XP_225713.3	ILMN_1365706	0006840711	S	5753	CCGTCCCCAGCCCTCAGAAATGGACAGGCCTAAGTTTCCTCCAGAACAGT					PREDICTED: Rattus norvegicus similar to nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 (LOC307231), mRNA.					
Rattus norvegicus	RefSeq	GI_31377507-S	ILMN_263199	P2RX5	NM_080780.2	NM_080780.2		113995	31377507	NM_080780.2	P2rx5	NP_542958.2	ILMN_1360712	0001780739	S	2291	GATGGACTTGTGCAGTTCAGCTCTTGCTGCTTGGTGGTGCTGGGGGTCTC	10	+	60047565-60047614	10q24	Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 5 (P2rx5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence TAS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; Any process that modulates the frequency, rate or extent of skeletal muscle [goid 43416] [evidence IMP]; The increase in size or mass of a skeletal muscle. This may be due to a change in the fiber number or size [goid 48630] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]	P2x5	P2x5
Rattus norvegicus	RefSeq	GI_62657884-S	ILMN_262549	BOC_PREDICTED	XM_001060215.1	XM_001060215.1		360715	109494296	XM_001060215.1	Boc_predicted	XP_001060215.1	ILMN_1360227	0002510292	S	4179	TGCAGTCGAGTTGGCGGAAGGACCCTAAGCACACTGTTCAGGAAGAACGC				11q21	PREDICTED: Rattus norvegicus biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein (predicted) (Boc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14249133-S	ILMN_61571	GLRX3	NM_032614.2	NM_032614.2		58815	78187978	NM_032614.2	Glrx3	NP_116003.2	ILMN_1368620	0004200707	S	908	GGCCAACCTACCCTCAGCTGTATGTGAGAGGGGATCTTGTTGGAGGACTG	1	+	197203459-197203508	1q41	Rattus norvegicus glutaredoxin 3 (Glrx3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]	MGC105380; PICOT	MGC105380; PICOT
Rattus norvegicus	RefSeq	GI_34881806	ILMN_47780	LOC503485	XM_229156.2	XM_229156.2		503485	34881806	XM_229156.2	LOC503485	XP_229156.2	ILMN_1651131	0004480152	S	6	AAAGGCAGATGCTATGGCCCCCGAAGAAGACTGCATCATCTGTATGGAGG					PREDICTED: Rattus norvegicus similar to Deltex2 (LOC503485), mRNA.					
Rattus norvegicus	RefSeq	GI_62651100-S	ILMN_69944	ALKBH_PREDICTED	XM_343092.3	XM_343092.3		362766	109478499	XM_343092.3	Alkbh_predicted	XP_343093.3	ILMN_1362402	0000770373	S	1017	GAAAACTGCCCGAGTTAATATGACTGTTCGGCAGGTACTGGCCACAGGCC	6	-	111664424-111664473	6q31	PREDICTED: Rattus norvegicus alkB, alkylation repair homolog (E. coli) (predicted) (Alkbh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645389-S	ILMN_56478	RAPSN_PREDICTED	XM_215773.4	XM_215773.4		362161	109468411	XM_215773.4	Rapsn_predicted	XP_215773.3	ILMN_1369743	0003710010	S	1453	TGAAATCCTAGGGTAGCAGCCAGGACCTCCACAGCCAACTCAGGGCCAGA	3	+	75405975-75406024	3q24	PREDICTED: Rattus norvegicus receptor-associated protein of the synapse (predicted) (Rapsn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647432	ILMN_66592	LOC500185	XM_575537.1	XM_575537.1		500185	62647432	XM_575537.1	LOC500185	XP_575537.1	ILMN_1650310	0000780358	S	332	ACTGCGTGCAAAGTACCCATGCTCCTCCCACAGTGATACAGACCCTAACA					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain variable region (LOC500185), mRNA.					
Rattus norvegicus	RefSeq	GI_62666498-S	ILMN_56533	LOC299306	XM_213075.3	XM_213075.3		299306	62666498	XM_213075.3	LOC299306	XP_213075.3	ILMN_1354142	0006200082	S	1417	GCACCCAGAGGACAGACCCCACGCATGCCTTGAGCATGCTTTGCAGTGTT				Xq12	PREDICTED: Rattus norvegicus similar to RuvB-like protein 1 (LOC299306), mRNA.					
Rattus norvegicus	RefSeq	GI_62638275-S	ILMN_266556	RGD1563053_PREDICTED	XR_008430.1	XR_008430.1		502214	109460407	XR_008430.1	RGD1563053_predicted		ILMN_1375173	0005340373	S	2204	GGCTCAGTCATTGCCTTCTACTTTGTCTTGGGGTATTTGGGCTCCTTGGC				1p13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1563053_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645024-S	ILMN_266283	ZFP482_PREDICTED	XM_001059498.1	XM_001059498.1		366029	109469826	XM_001059498.1	Zfp482_predicted	XP_001059498.1	ILMN_1362735	0003190347	S	1239	ACCGGCACATTCGAGGACACATGGGTATACGGCCCTTTCAGTGTACTGTG				3q11	PREDICTED: Rattus norvegicus zinc finger protein 482 (predicted) (Zfp482_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665176-S	ILMN_264355	RGD1311198_PREDICTED	XM_001075886.1	XM_001075886.1		307801	109508804	XM_001075886.1	RGD1311198_predicted	XP_001075886.1	ILMN_1368751	0002630736	S	1297	TGCCATTAAAAGGTCCAGCCGATCTGGGGAGTGGGAAACTGTGGAGCTGC				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730466C23 (predicted) (RGD1311198_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642942-S	ILMN_69059	MRPS30_PREDICTED	XM_215487.4	XM_215487.4		294767	109464357	XM_215487.4	Mrps30_predicted	XP_215487.4	ILMN_1355538	0006220592	S	1022	GGTTCTGGAGCGAAGCAGATGTTACTCGACCTTTTGTCTCCCAGGGTGTG	2	-	50510964-50511013	2q15	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S30 (predicted) (Mrps30_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576930-S	ILMN_283454	OLR244	NM_001000214.1	NM_001000214.1		293389	47576930	NM_001000214.1	Olr244	NP_001000214.1	ILMN_1350860	0004060452	S	680	CCATTCTTAAGATGCATTCCAACGAGGGTCGACAGAAGGCTTTCTCTACC	1	-	165407900-165407949	1q33	Rattus norvegicus olfactory receptor 244 (Olr244), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr244	Olr244
Rattus norvegicus	RefSeq	GI_62646264-S	ILMN_268914	ZHX3	XM_001068743.1	XM_001068743.1		311604	109471235	XM_001068743.1	Zhx3	XP_001068743.1	ILMN_1365276	0006770746	S	3064	ATGGGTGAAGAGACCCGGGCTGTGGCAGATACAAGCAGTGAGGATCAGGG				3q42	PREDICTED: Rattus norvegicus zinc fingers and homeoboxes 3, transcript variant 2 (Zhx3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647361-S	ILMN_63372	RGD1560584_PREDICTED	XM_575506.2	XM_575506.2		500154	109472129	XM_575506.2	RGD1560584_predicted	XP_575506.1	ILMN_1365245	0002630441	S	1422	AGCTGGAAAAAATCTTTTGTCCACGCACCCTGCATATTGTGGTAGGGGTA	4	+	91279392-91279441	4q24	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1560584_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639573-S	ILMN_58284	LOC499136	XM_574429.1	XM_574429.1		499136	62639573	XM_574429.1	LOC499136	XP_574429.1	ILMN_1368026	0006940750	S	466	GAGCTCCTAAGCTACGTGTCTCTACTCTCTCAAACCGCCATTCCACAAAC					PREDICTED: Rattus norvegicus similar to LRRGT00021 (LOC499136), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]	Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664348-S	ILMN_286752	DCP2_PREDICTED	XM_001055777.1	XM_001055777.1		291604	109514052	XM_001055777.1	Dcp2_predicted	XP_001055777.1	ILMN_1365197	0006620072	S	1508	TCCCAGTATCTGAGACCTGTTGCATGTGAGTGGGTGTCTCCTCGAGCCTT				18q11	PREDICTED: Rattus norvegicus DCP2 decapping enzyme homolog (S. cerevisiae) (predicted) (Dcp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650390-S	ILMN_274591	RGD1561526_PREDICTED	XM_001068079.1	XM_001068079.1		313906	109479049	XM_001068079.1	RGD1561526_predicted	XP_001068079.1	ILMN_1367845	0004540050	S	1319	CCATCCATGCCGAGGATTGGTTTGTTGTGAACCCGACGACCACGAAAAGC				6q13	PREDICTED: Rattus norvegicus similar to mKIAA1805 protein (predicted) (RGD1561526_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758115-S	ILMN_262592	PRELP	NM_053385.1	NM_053385.1		84400	16758115	NM_053385.1	Prelp	NP_445837.1	ILMN_1367879	0000730068	S	1096	CATGACTTCTCCTCGGATCTGGAAAACGTGCCACACCTGCGCTACCTGCG	13	-	46863667-46863716	13q13	Rattus norvegicus proline arginine-rich end leucine-rich repeat protein (Prelp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62664847-S	ILMN_64667	CDH5_PREDICTED	XM_226213.4	XM_226213.4		307618	109507714	XM_226213.4	Cdh5_predicted	XP_226213.4	ILMN_1359811	0006400347	S	2049	CGAGGTGAAGAAAGAAGAGGCAGACAATGATGGCGGTGGTCCCCCCTACG	19	-	779686-779735	19p14	PREDICTED: Rattus norvegicus cadherin 5 (predicted) (Cdh5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656452-S	ILMN_67261	LOC363623	XM_577105.1	XM_577105.1		363623	62656452	XM_577105.1	LOC363623	XP_577105.1	ILMN_1355467	0006590008	S	997	CCGAGTTCTACAGGGCTGGCAAAATGAAGGAAGAGCTGGGCAGCAAACCC				10q24	PREDICTED: Rattus norvegicus similar to Eno1 protein (LOC363623), mRNA.					
Rattus norvegicus	RefSeq	GI_19705474-S	ILMN_288039	AVPI1	NM_134373.1	NM_134373.1		171386	19705474	NM_134373.1	Avpi1	NP_599200.1	ILMN_1369745	0002120273	S	549	CCCACAGGCCAGCACCACTGACACGGCTTCCAGTGAGCAGTTTGGGAACT	1	+	248732768-248732817	1q54	Rattus norvegicus arginine vasopressin-induced 1 (Avpi1), mRNA.		The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]		esu	esu
Rattus norvegicus	RefSeq	GI_62642847-S	ILMN_64077	RGD1310139_PREDICTED	XM_226732.4	XM_226732.4		310040	109464299	XM_226732.4	RGD1310139_predicted	XP_226732.4	ILMN_1357383	0006520403	S	7915	AGTAACTGCCGCCACAGGAGAACCCAAAGGGAGAGAGCTTACCCAGCCTC	2	-	33648675-33648724	2q12	PREDICTED: Rattus norvegicus similar to KIAA0303 (predicted) (RGD1310139_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649453-S	ILMN_52457	RAD54L_PREDICTED	XM_216497.3	XM_216497.3		298429	62649453	XM_216497.3	Rad54l_predicted	XP_216497.3	ILMN_1366306	0002470497	S	2542	AGCTGGTCTGGATGAGTAGCTTGGGAAAGGATACAGGGAAAAGGGGGTCC					PREDICTED: Rattus norvegicus RAD54 like (S. cerevisiae) (predicted) (Rad54l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658215-S	ILMN_56323	SCARF2_PREDICTED	XM_237825.4	XM_237825.4		287949	109493593	XM_237825.4	Scarf2_predicted	XP_237825.2	ILMN_1361362	0005220048	S	3133	GCCATCGAGCTGGTTTTGATGGCTTCCTATCACCCCACGAGGGAACCCCA	11	-	85164473-85164522	11q23	PREDICTED: Rattus norvegicus scavenger receptor class F, member 2 (predicted) (Scarf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663283-S	ILMN_284980	SEMA4D_PREDICTED	XM_001053912.1	XM_001053912.1		306790	109505500	XM_001053912.1	Sema4d_predicted	XP_001053912.1	ILMN_1353169	0002970315	S	2234	CTGACCTGGAGCAGAGTGTGAAGGAGACGCTGGTAGAACCTGGGAGCTTC				17p14	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D (predicted) (Sema4d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27671957-S	ILMN_66431	RGD1311987_PREDICTED	XM_220517.2	XM_220517.2		287366	109488208	XM_220517.2	RGD1311987_predicted	XP_220517.1	ILMN_1369782	0002370037	S	369	GTCATCACGGACTGCGACTACATGGCCCTCAACGGCTCTCAGATCGGCCT	10	-	46102156-46102205	10q22	PREDICTED: Rattus norvegicus similar to CG12314-PA (predicted) (RGD1311987_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705554-S	ILMN_267871	IPMK	NM_134417.1	NM_134417.1		171458	19705554	NM_134417.1	Ipmk	NP_599244.1	ILMN_1355219	0002510035	S	5073	GGCGTTCACAGACACTTTGCTCTGGGCTCTGGTGGAAGATGGGAAATTGC	20	-	17947378-17947427	20p11	Rattus norvegicus inositol polyphosphate multikinase (Ipmk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system [goid 1841] [evidence ISS]; The process of introducing a phosphate group into inositol or an inositol derivative. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms [goid 46853] [evidence ISS]	Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5,6-tetrakisphosphate = ADP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate [goid 824] [evidence ISS]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence ISS]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Impk; Ipk2	Impk; Ipk2
Rattus norvegicus	RefSeq	GI_25282446-S	ILMN_292522	PLEKHB1	NM_172033.1	NM_172033.1		64471	25282446	NM_172033.1	Plekhb1	NP_742030.1	ILMN_1367748	0001660706	S	1496	CCTAAGGTTTCCTAGCTGTGGAACAGGTGAGCTCTTTGGGACCTCTGGCC	1	-	158082287-158082336	1q32	Rattus norvegicus pleckstrin homology domain containing, family B (evectins) member 1 (Plekhb1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Evt1; MGC93114; Kpl1	Evt1; MGC93114; Kpl1
Rattus norvegicus	RefSeq	GI_34878349-S	ILMN_289054	ELP2	NM_001034145.1	NM_001034145.1		307545	77628044	NM_001034145.1	Elp2	NP_001029317.1	ILMN_1362899	0004120373	S	2411	GGGGACCGAGTGGTTGGATTTTGCAAGCTGTGGCGAGGACCATACTGTGA	18	+	16410091-16410140	18p12	Rattus norvegicus elongation protein 2 homolog (S. cerevisiae) (Elp2), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation [goid 8023] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The aggregation, arrangement and bonding together of a mature, active proteasome complex [goid 43248] [evidence ISS]; Any process that modulates the frequency, rate or extent of the JAK-STAT signaling pathway [goid 46425] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	MGC124711	MGC124711
Rattus norvegicus	RefSeq	GI_47577764-S	ILMN_295629	OLR1247	NM_001000807.1	NM_001000807.1		405093	47577764	NM_001000807.1	Olr1247	NP_001000807.1	ILMN_1361563	0002480088	S	705	CACCTGCAGCTCCCATATAATTGCTGTTTCCCTGTTTTATGGGTCAGGTG	8	+	40696470-40696519	8q22	Rattus norvegicus olfactory receptor 1247 (Olr1247), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1247	Olr1247
Rattus norvegicus	RefSeq	GI_62656067	ILMN_69610	RGD1564616_PREDICTED	XM_573089.2	XM_573089.2		497903	109488097	XM_573089.2	RGD1564616_predicted	XP_573089.1	ILMN_1651127	0004780242	S	1967	GCCTCTGGGTGGACACATTCCCAAATCAGAAGTAGAGGGTGGCTCTCAAG	10	-	38946482-38946531	10q22	PREDICTED: Rattus norvegicus similar to hypothetical protein A830006N08 (predicted) (RGD1564616_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665991-S	ILMN_273383	GPRC6A	XM_001059232.1	XM_001059232.1		294394	109510132	XM_001059232.1	Gprc6a	XP_001059232.1	ILMN_1368382	0004670368	S	2660	GTACTGCAACAACCAACCCGAGGCCTGGTAACAAGACTGCAGCCTGTCAG				20q11	PREDICTED: Rattus norvegicus G protein-coupled receptor, family C, group 6, member A (Gprc6a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647211-S	ILMN_287881	GIMAP8	NM_001033923.1	NM_001033923.1		500112	76677902	NM_001033923.1	Gimap8	NP_001029095.1	ILMN_1358236	0004730672	S	767	GCTGTGCTTTCAACAACAAGGCGGACAAGAAGCAGCAGGAACTGCAGGTG	4	+	76740732-76740781	4q24	Rattus norvegicus GTPase, IMAP family member 8 (Gimap8), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	IanT; MGC116406	IanT; MGC116406
Rattus norvegicus	RefSeq	GI_34854700-S	ILMN_295575	RGD1306181_PREDICTED	XM_001071504.1	XM_001071504.1		308346	109461188	XM_001071504.1	RGD1306181_predicted	XP_001071504.1	ILMN_1355299	0000380594	S	702	TCTTTGGCTTCTTCGCCGTGGACTTCTCCAGCTTCCGTGGCTGCACCCTG				1q12	PREDICTED: Rattus norvegicus similar to A630041N19 protein (predicted) (RGD1306181_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665451-S	ILMN_288184	ARV1_PREDICTED	XM_001054399.1	XM_001054399.1		292097	109509062	XM_001054399.1	Arv1_predicted	XP_001054399.1	ILMN_1371992	0001400487	S	873	GGCGGGACCAGCTACCTCAAAAGAGAAGGCGCAAGAGATCCCAAAGCCTC				19q12	PREDICTED: Rattus norvegicus ARV1 homolog (yeast) (predicted) (Arv1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640767-S	ILMN_53279	LOC499190	XM_579930.1	XM_579930.1		499190	62640767	XM_579930.1	LOC499190	XP_579930.1	ILMN_1365674	0002100129	S	494	GCTCAGTAGCCCAAGCTCCCCTCAGACTCTCCAAATCAAAGAACCCTGTC					PREDICTED: Rattus norvegicus LOC499190 (LOC499190), mRNA.					
Rattus norvegicus	RefSeq	GI_62659158	ILMN_49459	SERPINB11_PREDICTED	XM_222495.4	XM_222495.4		304689	109497740	XM_222495.4	Serpinb11_predicted	XP_222495.3	ILMN_1650418	0002630292	S	1024	GAGGCCGCTGCAGCCACTGGGGAGACTATTTCTGTGAAGCGACTCCCTGT	13	+	13408869-13408918	13p13	PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11 (predicted) (Serpinb11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27692363-S	ILMN_52865	LOC295199	XM_227355.1	XM_227355.1		295199	27692363	XM_227355.1	LOC295199	XP_227355.1	ILMN_1366536	0006590403	S	883	CCACTCTCATCCTGTCTGACCTCCACAGCGCAGACCACCTGAAGACTAAG				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (LOC295199), mRNA.					
Rattus norvegicus	RefSeq	GI_62718348-S	ILMN_54991	LOC501375	XM_576788.2	XM_576788.2		501375	109513535	XM_576788.2	LOC501375	XP_576788.2	ILMN_1356920	0005390592	S	240	GCCCGACAAAGGTAAAAAGATCTCAGACACCACTGCCAAACTGAGAGATG	Un|NW_047883.1	+	2123260-2123309		PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501375), mRNA.					
Rattus norvegicus	RefSeq	GI_62655892	ILMN_297517	LOC682248	XM_001060664.1	XM_001060664.1		682248	109490401	XM_001060664.1	LOC682248	XP_001060664.1	ILMN_1650288	0005700215	S	706	GCCAGAGTCAGGGGTCAAACCTATCTAACCTCAGTCCTGCTCACTGTGCC					PREDICTED: Rattus norvegicus hypothetical protein LOC682248 (LOC682248), mRNA.					
Rattus norvegicus	RefSeq	GI_52138605	ILMN_297822	VPS33B	NM_022286.2	NM_022286.2		64060	52138605	NM_022286.2	Vps33b	NP_071622.1	ILMN_1650323	0005290397	S	2248	CCCCCAACACACACATCCTACCTCCCAGCTATACTCTTCAGAACTGGGAA	1	+	136109209-136109258	1q31	Rattus norvegicus vacuolar protein sorting 33 homolog B (yeast) (Vps33b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence NAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with the SNAP receptor syntaxin-2 [goid 30347] [evidence IDA]; Interacting selectively with the SNAP receptor syntaxin-3 [goid 30348] [evidence IDA]	MGC93106	MGC93106
Rattus norvegicus	RefSeq	GI_62640405-S	ILMN_47805	LOC360566	XM_340843.2	XM_340843.2		360566	62640405	XM_340843.2	LOC360566	XP_340844.2	ILMN_1350342	0001240280	S	585	CAAGAGATGGACTAAAGCTCTGAAATAGTAAGCCAGCCCCAGTTAAATGC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC360566), mRNA.					
Rattus norvegicus	RefSeq	GI_62656193-S	ILMN_53492	LOC497920	XM_579758.1	XM_579758.1		497920	62656193	XM_579758.1	LOC497920	XP_579758.1	ILMN_1352355	0004590563	S	199	CCTTCTGCAGTGTGCACTTGGGCGGTTCTTGGAAGAGTGAGGAGACAGCC					PREDICTED: Rattus norvegicus LOC497920 (LOC497920), mRNA.					
Rattus norvegicus	RefSeq	GI_62664381-S	ILMN_47958	FEM1C_PREDICTED	XM_228396.3	XM_228396.3		302288	109506567	XM_228396.3	Fem1c_predicted	XP_228396.1	ILMN_1372717	0002060270	S	3911	GCCCCTTATTGATTAGCAAAGAGTCACGCCTGTGAACTTCATGATCTGGG	18	-	40717469-40717518	18q11	PREDICTED: Rattus norvegicus fem-1 homolog c (C.elegans) (predicted) (Fem1c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578054-S	ILMN_264744	OLR1020	NM_001000069.1	NM_001000069.1		288854	47578054	NM_001000069.1	Olr1020	NP_001000069.1	ILMN_1354568	0000940450	S	870	AAGGAACAAACAGGTGAAGGATGCTTTCAAGCAGGTGCTTCACCGACTGT	7	-	7012736-7012785	7q11	Rattus norvegicus olfactory receptor 1020 (Olr1020), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1020	Olr1020
Rattus norvegicus	RefSeq	GI_47577594-S	ILMN_294067	OLR661	NM_001000925.1	NM_001000925.1		405243	47577594	NM_001000925.1	Olr661	NP_001000925.1	ILMN_1367669	0000130020	S	761	CCTATGTTCCAATGGGTGATTCTGTTGGGGATGACAAGGTGTTTGCTCTG	3	-	72974855-72974904	3q24	Rattus norvegicus olfactory receptor 661 (Olr661), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr661	Olr661
Rattus norvegicus	RefSeq	GI_62659294-S	ILMN_266202	CCNT2_PREDICTED	XM_001054848.1	XM_001054848.1		304758	109498559	XM_001054848.1	Ccnt2_predicted	XP_001054848.1	ILMN_1359160	0007100647	S	1881	CGGCCCCAGTGCAAGGAAGAAGCTGCATATCAACGATGCCTCCCACAACC				13q12	PREDICTED: Rattus norvegicus cyclin T2 (predicted) (Ccnt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576670-S	ILMN_287457	OLR1697	NM_001001111.1	NM_001001111.1		406010	47576670	NM_001001111.1	Olr1697	NP_001001111.1	ILMN_1364358	0001570097	S	890	GTTTAAGGAATAAGGAAGTCAAGGCAGCACTGAAAAGAACTCTGGGCCTG	20	-	710790-710839	20p12	Rattus norvegicus olfactory receptor 1697 (Olr1697), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1697	Olr1697
Rattus norvegicus	RefSeq	GI_62661738-S	ILMN_58510	LOC498545	XM_573819.1	XM_573819.1		498545	62661738	XM_573819.1	LOC498545	XP_573819.1	ILMN_1366057	0001850162	S	6246	TCCAGGTATCCCCAGGACTGCCACAGAAGGAGAAGGGCCCCAGGTTCTGA				15q11	PREDICTED: Rattus norvegicus similar to Transforming growth factor beta 1 induced transcript 4, isoform 1 (LOC498545), mRNA.					
Rattus norvegicus	RefSeq	GI_29789037-S	ILMN_295162	BMP6	NM_013107.1	NM_013107.1		25644	29789037	NM_013107.1	Bmp6	NP_037239.1	ILMN_1354020	0006370672	S	1155	GGACGTGTCCCGGGGCTCCAGTGCTTCAGACTACAACAGCAGTGAGTTAA	17	-	32380338-32380348:32380436-32380474	17p12	Rattus norvegicus bone morphogenetic protein 6 (Bmp6), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of aldosterone [goid 32349] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	VGR	VGR
Rattus norvegicus	RefSeq	GI_62645699-S	ILMN_48701	LOC502639	XM_578134.1	XM_578134.1		502639	62645699	XM_578134.1	LOC502639	XP_578134.1	ILMN_1372889	0001230280	S	7	GGAAGCCGGAAGCCCTGGAGGACTTCTGTTCTCATTCCTCACTCTTTGGC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (LOC502639), mRNA.					
Rattus norvegicus	RefSeq	GI_62644033-S	ILMN_55917	LOC502582	XM_578068.1	XM_578068.1		502582	62644033	XM_578068.1	LOC502582	XP_578068.1	ILMN_1368945	0003390022	S	527	GACAGGAGTGACCCCCACCATGGGTATTGGGTTCAGAGGGACAGGAGTGA					PREDICTED: Rattus norvegicus similar to dehydrin 6 (LOC502582), mRNA.					
Rattus norvegicus	RefSeq	GI_34882408-S	ILMN_63912	LOC367471	XM_346152.2	XM_346152.2		367471	109513695	XM_346152.2	LOC367471	XP_346153.1	ILMN_1365241	0002640750	S	362	AGTGAAAGACGCCCATCTCGCAAGGGTCATGGTTGGCCGAGCTGTGGAAC	Un|NW_047906.1	+	3699-3748		PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367471), mRNA.					
Rattus norvegicus	RefSeq	GI_62662771-S	ILMN_60835	LOC290805	XM_224918.3	XM_224918.3		290805	62662771	XM_224918.3	LOC290805	XP_224918.3	ILMN_1363995	0003940435	S	861	GTTCCGTAAGTGCACGCCGCTGCTCAAAGAGTGAAAACCACCACCTTGTC				16q12.3	PREDICTED: Rattus norvegicus similar to Werner syndrome helicase homolog (LOC290805), mRNA.					
Rattus norvegicus	RefSeq	GI_62645355-S	ILMN_54704	SLC43A3_PREDICTED	XM_230052.4	XM_230052.4		311170	109468383	XM_230052.4	Slc43a3_predicted	XP_230052.4	ILMN_1372393	0004230452	S	770	GCAGTGCCTGGCATGTTGGGCGTACTTTCCTTCTGATGCCTCGGGGACAT	3	+	68163059-68163108	3q24	PREDICTED: Rattus norvegicus solute carrier family 43, member 3 (predicted) (Slc43a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648674-S	ILMN_58396	RGD1307658_PREDICTED	XM_232819.4	XM_232819.4		313069	109474674	XM_232819.4	RGD1307658_predicted	XP_232819.3	ILMN_1367722	0002690632	S	1663	GGCCATGAAAGCTGAACGTTTGAACCGGCAGAGATTCTTGGGGACAGAGG	5	+	26383717-26383766	5q13	PREDICTED: Rattus norvegicus similar to 3000004N20Rik protein (predicted) (RGD1307658_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666086-S	ILMN_57622	LOC502427	XM_577909.1	XM_577909.1		502427	62666086	XM_577909.1	LOC502427	XP_577909.1	ILMN_1359631	0001090504	S	2348	CCTGTTACCGATGGCTGCTGCAGGAGGACCTCTAAAAATCCTCCTTGATG					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502427), mRNA.					
Rattus norvegicus	RefSeq	GI_62647208-S	ILMN_278953	RGD1304910_PREDICTED	XM_001054349.1	XM_001054349.1		312309	109473455	XM_001054349.1	RGD1304910_predicted	XP_001054349.1	ILMN_1370420	0003520253	S	1662	CCCTACCTGTGTTCAGCCTGTGGCCGTGGCTTCCGACAAAAGCAGCATCT				4q24	PREDICTED: Rattus norvegicus similar to hypothetical protein C130032F08 (predicted) (RGD1304910_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648238-S	ILMN_59108	LOC500341	XM_575693.1	XM_575693.1		500341	62648238	XM_575693.1	LOC500341	XP_575693.1	ILMN_1356919	0000870168	S	77	AGAGCAGAGAATGGAGTGGGAGCCCCATGAACTGTGGACAGCATATAGGC					PREDICTED: Rattus norvegicus LOC500341 (LOC500341), mRNA.					
Rattus norvegicus	RefSeq	GI_62649231-S	ILMN_64181	LOC500499	XM_575863.1	XM_575863.1		500499	62649231	XM_575863.1	LOC500499	XP_575863.1	ILMN_1357960	0003990139	S	349	CCAACAAGGAAAAGGATGAGGTCCACTTGAGGAATGCCCCCTTGGTCATG				5q33	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC500499), mRNA.					
Rattus norvegicus	RefSeq	GI_48526510-S	ILMN_279386	RPS15	NM_017151.2	NM_017151.2		29285	48526510	NM_017151.2	Rps15	NP_058847.1	ILMN_1371916	0003140520	S	145	AGACGGCGCCTGAACCGAGGCCTGCGGAGGAAGCAGCACTCACTGCTCAA	7	-	10927738-10927787	7q11	Rattus norvegicus ribosomal protein S15 (Rps15), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence TAS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; The directed movement of a ribosomal small subunit from the nucleus into the cytoplasm [goid 56] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577218-S	ILMN_300669	OLR36	NM_001000935.1	NM_001000935.1		405257	47577218	NM_001000935.1	Olr36	NP_001000935.1	ILMN_1371018	0000060176	S	297	CCCAGCATGCTTCCTGCAGATGTATCTGTTCCATGGTTTCAACTGCTCAG	1	+	157086250-157086299	1q32	Rattus norvegicus olfactory receptor 36 (Olr36), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr36	Olr36
Rattus norvegicus	RefSeq	GI_62643750-S	ILMN_63018	RGD1562501_PREDICTED	XM_215630.4	XM_215630.4		295234	109465040	XM_215630.4	RGD1562501_predicted	XP_215630.1	ILMN_1349142	0005360066	S	766	GTGATGGAAGCTGGAGTGGAAAAGGGATCGTGATTGGGAAGAGCAGGGCC	2	-	180665419-180665468	2q34	PREDICTED: Rattus norvegicus similar to Late endosomal/lysosomal Mp1 interacting protein (p14) (predicted) (RGD1562501_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717980-S	ILMN_59012	LOC501267	XM_580182.1	XM_580182.1		501267	62717980	XM_580182.1	LOC501267	XP_580182.1	ILMN_1357959	0004210528	S	869	CAGGGCCATGGGCCGATCAGGCCTTGGTTTAATTCCTTTTTCCCAAGCAA					PREDICTED: Rattus norvegicus LOC501267 (LOC501267), mRNA.					
Rattus norvegicus	RefSeq	GI_47577260-S	ILMN_290543	OLR395	NM_001000559.1	NM_001000559.1		366024	47577260	NM_001000559.1	Olr395	NP_001000559.1	ILMN_1349447	0007040019	S	326	ATATCGACAGCTTTCTTCTCACATCCATGGCCTATGATAGGTATGTGGCC	3	+	15473008-15473057	3p11	Rattus norvegicus olfactory receptor 395 (Olr395), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr395; ratchr3-15369055-15369993_ORF	Olr395; ratchr3-15369055-15369993_ORF
Rattus norvegicus	RefSeq	GI_62649893-S	ILMN_52880	RAP1GA1	XM_233609.4	XM_233609.4		313644	109475700	XM_233609.4	Rap1ga1	XP_233609.4	ILMN_1372167	0005080270	S	3161	GCCGTGAGCCAAGTCCTTGTGTGTATCTGTTCACTCTTAGGAGCCACGCC	5	+	156489441-156489490	5q36	PREDICTED: Rattus norvegicus RAP1, GTPase activating protein 1 (Rap1ga1), mRNA.					
Rattus norvegicus	RefSeq	GI_62664415-S	ILMN_264819	RGD1564428_PREDICTED	XM_001057605.1	XM_001057605.1		498866	109507335	XM_001057605.1	RGD1564428_predicted	XP_001057605.1	ILMN_1373789	0004060546	S	353	TGTGGGCGGACCTTCCTGCCAGACAGACTAATTGTTCACCAGCGATCTTG				18q11	PREDICTED: Rattus norvegicus similar to FLJ32921 protein (predicted) (RGD1564428_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663833-S	ILMN_48899	LOC502131	XM_577582.1	XM_577582.1		502131	62663833	XM_577582.1	LOC502131	XP_577582.1	ILMN_1362328	0006290035	S	996	AAATCTGCTTTGAAGACCGAGAGCGATATGCTGCAGCTTCAGGTCACCAC					PREDICTED: Rattus norvegicus similar to TRGV9 protein (LOC502131), mRNA.					
Rattus norvegicus	RefSeq	GI_62661769-S	ILMN_60372	PCDH17_PREDICTED	XM_224389.3	XM_224389.3		306055	62661769	XM_224389.3	Pcdh17_predicted	XP_224389.3	ILMN_1369130	0002510181	S	3676	AGCTCTTGCAGGACTGCCGGGGAAATGACCCTGTGGCTGTTGAGCAAGCT				15q12	PREDICTED: Rattus norvegicus protocadherin 17 (predicted) (Pcdh17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577180-S	ILMN_267853	OLR349	NM_001001019.1	NM_001001019.1		405393	47577180	NM_001001019.1	Olr349	NP_001001019.1	ILMN_1361645	0002900180	S	765	CATGTACTTGCTGCCTAGCTCCAGTCACTCCATGGATACTGACCCCATTG	1	-	216175934-216175983	1q43	Rattus norvegicus olfactory receptor 349 (Olr349), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr349	Olr349
Rattus norvegicus	RefSeq	GI_62643141-S	ILMN_56101	LOC499565	XM_574889.1	XM_574889.1		499565	62643141	XM_574889.1	LOC499565	XP_574889.1	ILMN_1358712	0000110128	S	314	CCTTCTGAGAGTGCCTATTTCACCTTTCCTCAACATGCAGGGTGTCTGCG					PREDICTED: Rattus norvegicus similar to LRRGT00038 (LOC499565), mRNA.					
Rattus norvegicus	RefSeq	GI_40254769-S	ILMN_264754	FUT4	NM_022219.2	NM_022219.2		60670	40254769	NM_022219.2	Fut4	NP_071555.2	ILMN_1361955	0003140619	S	3648	TTGTGCTTGGCGGGCAGTTGGCGGGATATGTGTAGCCATGAGCACATTGG	8	-	11541788-11541837	8q11	Rattus norvegicus fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) (Fut4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha(1,3)-linkage [goid 46920] [evidence IDA]; Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Fuct	Fuct
Rattus norvegicus	RefSeq	GI_62664733-S	ILMN_58252	RTTN_PREDICTED	XM_214524.4	XM_214524.4		291377	109506844	XM_214524.4	Rttn_predicted	XP_214524.4	ILMN_2040050	0000450327	S	1349	GAGAAACTGCTCCAAGTGTTGGGGTCCCTTGGAGAAACTATGTGCTACCG	18	+	85863544-85863593	18q13	PREDICTED: Rattus norvegicus rotatin (predicted) (Rttn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664735-S	ILMN_58252	RTTN_PREDICTED	XM_214524.4	XM_214524.4		291377	109506844	XM_214524.4	Rttn_predicted	XP_214524.4	ILMN_1363430	0006620079	S	6361	CGAGATGAGCAAGTACACACACAAGAGCAGCCCTCACGTGCCTCTGCTGA	18	+	86002837-86002886	18q13	PREDICTED: Rattus norvegicus rotatin (predicted) (Rttn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656586-S	ILMN_284527	LOC497959	NM_001025758.1	NM_001025758.1		497959	71043907	NM_001025758.1	LOC497959	NP_001020929.1	ILMN_1360502	0000050162	S	872	CCAGACAGCCGGGAAGGGCTGGAGAGTGAGGACAGTTATGAACGGGGTAA	10	-	64427323-64427372	10q25	Rattus norvegicus similar to novel protein (LOC497959), mRNA.		The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]	MGC116192	MGC116192
Rattus norvegicus	RefSeq	GI_62661640-S	ILMN_53504	ZFP395_PREDICTED	XM_224298.4	XM_224298.4		305972	109501812	XM_224298.4	Zfp395_predicted	XP_224298.4	ILMN_1352478	0000630605	S	1640	GGCGTGGATGTGGGCGGCCAGGGCTCCATTGGCTAAGATAGAACACTTAA	15	+	44817594-44817643	15p12	PREDICTED: Rattus norvegicus zinc finger protein 395 (predicted) (Zfp395_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11120711-S	ILMN_268146	TSN	NM_021762.1	NM_021762.1		60381	11120711	NM_021762.1	Tsn	NP_068530.1	ILMN_1357397	0003840082	S	771	CAGCGGCTTGTGGTGAAAAATAGGAGCTTTCCCCTGCGGCTGGCCTTGCT	13	-	30917540-30917567:30917568-30917589	13q11	Rattus norvegicus translin (Tsn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IDA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649054-S	ILMN_294479	LOC500475	NM_001024346.1	NM_001024346.1		500475	66730489	NM_001024346.1	LOC500475	NP_001019517.1	ILMN_1368666	0002360114	S	1799	CAGGCCACCGAGGAGGAAAATGAGGAAGGCCATCTTTCTAGGGCACAGAG	5	+	79546027-79546076	5q24	Rattus norvegicus similar to hypothetical protein 4933430I17 (LOC500475), mRNA.					
Rattus norvegicus	RefSeq	GI_62665382-S	ILMN_68929	FAM38A_PREDICTED	XM_341708.2	XM_341708.2		361430	62665382	XM_341708.2	Fam38a_predicted	XP_341709.2	ILMN_1374562	0006650671	S	10266	GGCTACGGGATTGTGGGGCTCTACGTCTCTATCGTGCTGGTCGTTGGCAA					PREDICTED: Rattus norvegicus family with sequence similarity 38, member A (predicted) (Fam38a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928837-S	ILMN_265524	TMOD2	NM_031613.1	NM_031613.1		58814	13928837	NM_031613.1	Tmod2	NP_113801.1	ILMN_1362257	0002940044	S	921	GATCGACAACCAGAGGCAGCAGTTGGGAACAGCCGTGGAGATGGAGATCG	8	-	80395425-80395462:80397458-80397469	8q24	Rattus norvegicus tropomodulin 2 (Tmod2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence TAS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence IDA]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655956-S	ILMN_263992	RGD1562841_PREDICTED	XM_001065126.1	XM_001065126.1		363563	109490496	XM_001065126.1	RGD1562841_predicted	XP_001065126.1	ILMN_1366501	0007040398	S	725	CGGATCAGTCCCGCATCGTGGCACTTAACGCCCACACCTTTCTGCGCAAC				10q12	PREDICTED: Rattus norvegicus similar to fibrillarin (predicted) (RGD1562841_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653031-S	ILMN_53576	DHH	XM_343327.2	XM_343327.2		84380	62653031	XM_343327.2	Dhh	XP_343328.1	ILMN_1370554	0006380162	S	2171	GCTATTGTGACCTAACCCTGTAGACTGGATCAGCCCAGCAGTCATCCTGC				7q36	PREDICTED: Rattus norvegicus desert hedgehog homolog (Drosophila) (Dhh), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events [goid 22402] [evidence ISS]; The specification of male sex of an individual organism [goid 30238] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis [goid 33327] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis [goid 33327] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence NAS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647119-S	ILMN_51343	LOC500098	XM_575449.1	XM_575449.1		500098	62647119	XM_575449.1	LOC500098	XP_575449.1	ILMN_1350816	0001580280	S	702	TCTGCCCAGAAGAGGCAGATGGCTGTTTATCTCTGTGCCAGCAGCATAGC					PREDICTED: Rattus norvegicus similar to T-cell receptor beta chain precursor V region (CRTB39) - rat (fragment) (LOC500098), mRNA.					
Rattus norvegicus	RefSeq	GI_62658592-S	ILMN_281260	RGD1309735_PREDICTED	XM_001075822.1	XM_001075822.1		360776	109496771	XM_001075822.1	RGD1309735_predicted	XP_001075822.1	ILMN_1372591	0002230458	S	406	ACTGCCTCTGGGGCCTATGGCGGGGGGACATCATCTTCTACTGTGCTTGT				12q11	PREDICTED: Rattus norvegicus similar to CG14977-PA (predicted) (RGD1309735_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655457-S	ILMN_264773	RGD1562478_PREDICTED	XM_001066796.1	XM_001066796.1		503269	109487502	XM_001066796.1	RGD1562478_predicted	XP_001066796.1	ILMN_1371500	0006650102	S	434	GCCACCTCTACTTCCGGGGTGCTAATGCTGCGCTCCTGGTTTATGACATC				9q36	PREDICTED: Rattus norvegicus similar to RAB17, member RAS oncogene family (predicted) (RGD1562478_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978470-S	ILMN_292664	AFP	NM_012493.1	NM_012493.1		24177	6978470	NM_012493.1	Afp	NP_036625.1	ILMN_1350892	0000780075	S	1729	AGCACGCGGCTGTCACTGCTGATTTCTCTGGCCTCTTGGAGAAGTGCTGC	14	-	19093749-19093798	14p22	Rattus norvegicus alpha-fetoprotein (Afp), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence ISS]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence IEP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence ISS]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IEA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IEA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IEA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648950-S	ILMN_282459	MCART1	NM_001024785.2	NM_001024785.2		313241	67514577	NM_001024785.2	Mcart1	NP_001019956.1	ILMN_1367452	0000540215	S	754	TCGTGGGCCCATTAAGGAGCATCTGCCTACTGCCACTACAAATAGTGAAC	5	-	61958415-61958464	5q22	Rattus norvegicus mitochondrial carrier triple repeat 1 (Mcart1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664644-S	ILMN_52572	LOC361350	XM_346965.2	XM_346965.2		361350	62664644	XM_346965.2	LOC361350	XP_346966.2	ILMN_1371340	0002470458	S	631	GAGGCACAGAGAGGGGTGTGGACGGTGCTGAATCCTGAGGCTGTGTGTTT					PREDICTED: Rattus norvegicus hypothetical LOC361350 (LOC361350), mRNA.					
Rattus norvegicus	RefSeq	GI_62642812-S	ILMN_62306	LOC309129	XM_219503.3	XM_219503.3		309129	62642812	XM_219503.3	LOC309129	XP_219503.3	ILMN_1370356	0002570347	S	2509	GTCACTGAACGATGTCCGCAATTGGCCTGACCCCCAGATTTCTGAGCTGC				2q12	PREDICTED: Rattus norvegicus similar to FCH domain only 2 (LOC309129), mRNA.					
Rattus norvegicus	RefSeq	GI_62643235-A	ILMN_297318	TRIM55	NM_001012218.1	NM_001012218.1		365751	58866011	NM_001012218.1	Trim55	NP_001012218.1	ILMN_1376912	0003170138	S	2314	GGCCACACTTCCATAGTCCAGAAGGCCAAAGGTCTAGGGCAATTCTTTAG	2	+	104762792-104762841	2q24	Rattus norvegicus tripartite motif-containing 55 (Trim55), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717994-S	ILMN_59886	LOC363324	XM_343663.2	XM_343663.2		363324	62717994	XM_343663.2	LOC363324	XP_343664.2	ILMN_1372746	0000770341	S	764	ATCAATAGAGCTGCAGGGCGAGTCTGTCCCGCCCCAGAGCATATCCGCCA					PREDICTED: Rattus norvegicus hypothetical LOC363324 (LOC363324), mRNA.					
Rattus norvegicus	RefSeq	Rn.41053	ILMN_272951	SPHK2	NM_001012066.1	NM_001012066.1		308589	58865705	NM_001012066.1	Sphk2	NP_001012066.1	ILMN_1530417	0001410463	S	2329	TAGTCTAAAAAGCAATTGAAAAGGTCTATGCAATAAAGGTGTTGCTTTCT	1	-	96178619-96178668	1q22	Rattus norvegicus sphingosine kinase 2 (Sphk2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The chemical reactions and pathways involving sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues [goid 6670] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]	Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: sphingosine + ATP = sphingosine 1-phosphate + ADP [goid 17050] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639755-A	ILMN_272951	SPHK2	NM_001012066.1	NM_001012066.1		308589	58865705	NM_001012066.1	Sphk2	NP_001012066.1	ILMN_1376743	0003170288	S	2091	TCGAGGGTGGGATCTGCCTTTCTTGATGTCCAATGATGGGGCCTGGAATG	1	-	96178857-96178906	1q22	Rattus norvegicus sphingosine kinase 2 (Sphk2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The chemical reactions and pathways involving sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues [goid 6670] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]	Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: sphingosine + ATP = sphingosine 1-phosphate + ADP [goid 17050] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_53850655-S	ILMN_279322	FBXL6	NM_001005563.1	NM_001005563.1		362941	53850655	NM_001005563.1	Fbxl6	NP_001005563.1	ILMN_1352939	0003190286	S	1480	CGGGGCTGCTGTATCTCAATCTGGAGTCCTGTCGTTGTCTCCCACGAGGT	7	-	114587930-114587979	7q34	Rattus norvegicus F-box and leucine-rich repeat protein 6 (Fbxl6), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95310	MGC95310
Rattus norvegicus	RefSeq	GI_62648075-S	ILMN_50984	ZFP637	XM_342745.3	XM_342745.3		362425	109472535	XM_342745.3	Zfp637	XP_342746.3	ILMN_1350333	0000840632	S	1170	CAGAGTTCACACGGGTCTGAAGCCCTATGCGTGTTCCCACTGCAGGAAGA	4	+	154133363-154133412	4q42	PREDICTED: Rattus norvegicus zinc finger protein 637 (Zfp637), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650087-S	ILMN_62769	LOC500592	XM_575965.2	XM_575965.2		500592	109475882	XM_575965.2	LOC500592	XP_575965.2	ILMN_1368313	0005570164	S	734	AGACCCTGGCCTCACCACAGACTACCCATTTCTCAGCATCAGACAGCGCC	5	+	169347554-169347573:169348015-169348044	5q36	PREDICTED: Rattus norvegicus similar to tumor necrosis factor receptor superfamily, member 25 (LOC500592), mRNA.					
Rattus norvegicus	RefSeq	GI_62657450-S	ILMN_64990	USP36_PREDICTED	XM_221143.4	XM_221143.4		303700	109489442	XM_221143.4	Usp36_predicted	XP_221143.4	ILMN_1350256	0001190148	S	3019	GCCCGGACCCAGACCGTGGTTGATGACTGGGATGAAGAGTTTGATCGAGG	10	-	108268008-108268057	10q32.3	PREDICTED: Rattus norvegicus ubiquitin specific protease 36 (predicted) (Usp36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663247-S	ILMN_268998	CTS8_PREDICTED	XM_001065250.1	XM_001065250.1		290972	109505375	XM_001065250.1	Cts8_predicted	XP_001065250.1	ILMN_1360560	0004670332	S	621	GAAGGACACTGTCGGTACCTTCCTGAACGTTCTGCTGCTAGGATCAAAGG				17p14	PREDICTED: Rattus norvegicus cathepsin 8 (predicted) (Cts8_predicted), mRNA.			Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638907-S	ILMN_49907	TTYH1_PREDICTED	XM_218263.3	XM_218263.3		292597	62638907	XM_218263.3	Ttyh1_predicted	XP_218263.3	ILMN_1359698	0001450537	S	2866	AAGTGGGGTGTTGGCTGGTGCTAGTCTGGAGGCTCAGGGAAAAAGTTCTC				1q12	PREDICTED: Rattus norvegicus tweety homolog 1 (Drosophila) (predicted) (Ttyh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643458-S	ILMN_48777	EXOSC8_PREDICTED	XM_215566.3	XM_215566.3		295050	109464744	XM_215566.3	Exosc8_predicted	XP_215566.3	ILMN_1354033	0001690300	S	724	CTTCACAAGCCAGGTGGGAGTGGGCTGACTGGAGCTAAACTTCAGGACTG	2	-	143955122-143955159:143955440-143955451	2q26	PREDICTED: Rattus norvegicus exosome component 8 (predicted) (Exosc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079064-S	ILMN_48777	EXOSC8_PREDICTED	XM_215566.3	XM_215566.3		295050	109464744	XM_215566.3	Exosc8_predicted	XP_215566.3	ILMN_1368548	0004850273	S	1221	GCAGGCAGCCAGTCAAAGAGTAAAGTGAAGAGAGGCATGCCAACCACTCC	2	-	143954625-143954674	2q26	PREDICTED: Rattus norvegicus exosome component 8 (predicted) (Exosc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642456-S	ILMN_287249	LOC365476	XM_001060079.1	XM_001060079.1		365476	109463977	XM_001060079.1	LOC365476	XP_001060079.1	ILMN_1372928	0005080131	S	4949	CCAGCAGGAGCAGAAGGTAGACCAATGCTGACCTAACGTCCCTTGGATAG				1q54	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 79 (LOC365476), mRNA.					
Rattus norvegicus	RefSeq	GI_62718686-S	ILMN_53387	LOC503396	XM_578934.1	XM_578934.1		503396	62718686	XM_578934.1	LOC503396	XP_578934.1	ILMN_1359987	0003990504	S	1030	ACCCACCATTGCGCGCAGAGAGAGCAACCTGCGAGAGTCGGATTGGGGAT					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503396), mRNA.					
Rattus norvegicus	RefSeq	GI_62647068	ILMN_48946	LOC502741	XM_578241.1	XM_578241.1		502741	62647068	XM_578241.1	LOC502741	XP_578241.1	ILMN_1651143	0001190066	S	197	TACATCTTCAACATACACAGAAGCACCGGGGTTGGGGGGAGAGCCGAGCG				4q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L38 (LOC502741), mRNA.					
Rattus norvegicus	RefSeq	GI_62641666-S	ILMN_269512	LOC683447	XM_001065985.1	XM_001065985.1		683447	109463281	XM_001065985.1	LOC683447	XP_001065985.1	ILMN_1361393	0001340239	S	465	AGGAATCCCTGCCCTTCAGGAATGCAACCCCACCAACGACACAGTGTGCC					PREDICTED: Rattus norvegicus similar to Tumor necrosis factor receptor superfamily member 23 precursor (Tumor necrosis factor receptor p60 homolog 1) (TNF receptor family member SOB) (Decoy TRAIL receptor 1) (TNF receptor homolog 1) (LOC683447), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646090-S	ILMN_67931	SPAG4L_PREDICTED	XM_230755.4	XM_230755.4		296289	109469062	XM_230755.4	Spag4l_predicted	XP_230755.4	ILMN_1365094	0002900021	S	870	GCCAGAAAACATCATCCAGACATTTCAGCTCCAGAACCAGCCACCCAGGG	3	-	144237117-144237133:144238283-144238315	3q41	PREDICTED: Rattus norvegicus sperm associated antigen 4-like (predicted) (Spag4l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645205-S	ILMN_69581	LOC296724	XM_212982.3	XM_212982.3		296724	62645205	XM_212982.3	LOC296724	XP_212982.3	ILMN_1371262	0004060059	S	1044	GGTCGAAATGGTTCTGGAAACTTTGGTGGTCGTGGAGGTGGTTTTGGTGG					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC296724), mRNA.					
Rattus norvegicus	RefSeq	GI_62666726-S	ILMN_270570	RGD1562211_PREDICTED	XM_001066361.1	XM_001066361.1		317398	109511650	XM_001066361.1	RGD1562211_predicted	XP_001066361.1	ILMN_1350452	0004670364	S	1660	CTGGCAGCACAGGCCAGAAGCCACGAGTCATCTCACTTACAGATTGCCTG				Xq14	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 51 (predicted) (RGD1562211_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649458	ILMN_294054	MAST2_PREDICTED	XM_001070900.1	XM_001070900.1		313819	109477058	XM_001070900.1	Mast2_predicted	XP_001070900.1	ILMN_1651050	0006220014	S	5112	AAGTGTCCGTGGGCTGACCCATCCGCTTCTTGAGGTCCCCAGCCAGAACT				5q36	PREDICTED: Rattus norvegicus microtubule associated serine/threonine kinase 2 (predicted) (Mast2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114229-S	ILMN_267931	V1RG8	NM_001008920.1	NM_001008920.1		494269	57114229	NM_001008920.1	V1rg8	NP_001008920.1	ILMN_1353453	0001660132	S	729	TCTGAAAGTCTTGCCTGAGGACAGAGCCACCCAAATTATTCTCATCCTGG	1	+	71968103-71968152	1q21	Rattus norvegicus vomeronasal 1 receptor, G8 (V1rg8), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665152-S	ILMN_57251	RGD1560953_PREDICTED	XM_214664.4	XM_214664.4		291963	109508054	XM_214664.4	RGD1560953_predicted	XP_214664.1	ILMN_1358150	0001170019	S	607	GGTTATAGCGTCTCTACTGTGGCTGTAGGCTGCTGGGTGCTGGTTGGCTC	19	+	35143918-35143925:35143926-35143967	19q11	PREDICTED: Rattus norvegicus similar to HSPC171 protein (predicted) (RGD1560953_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667266-S	ILMN_294626	RGD1566159_PREDICTED	XM_001069532.1	XM_001069532.1		503466	109512339	XM_001069532.1	RGD1566159_predicted	XP_001069532.1	ILMN_1365788	0002690332	S	1709	AGCTTGCTGATGTGCAGGTCCAACTGAAGGCGATGCTACAGGCCGCACAG				Xq35	PREDICTED: Rattus norvegicus similar to preferentially expressed antigen in melanoma-like 3 (predicted) (RGD1566159_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659582-S	ILMN_57786	ZBTB37_PREDICTED	XM_222803.4	XM_222803.4		304918	109498091	XM_222803.4	Zbtb37_predicted	XP_222803.2	ILMN_1355965	0005910576	S	1941	GACCAACATGTGGAAAGCACTAAAGGCTCTTCTCCTCGTTCCCACCTCAC	13	-	76579420-76579469	13q22	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 37 (predicted) (Zbtb37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646714-S	ILMN_54988	SEMA3D	XM_342625.3	XM_342625.3		246262	109471648	XM_342625.3	Sema3d	XP_342626.1	ILMN_1353557	0003360408	S	2742	CAGATGTGGTACAGGGAGAAGCGGAGACAGCGCAACAAGGGCAGCGCAAA	4	-	18643855-18643904	4q12	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D (Sema3d), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575875-S	ILMN_272433	TUBG1	NM_145778.2	NM_145778.2		252921	47575875	NM_145778.2	Tubg1	NP_665721.1	ILMN_1374754	0006020100	S	1466	ATGAGTCGCCCGAGACAGGGACCCTCATCTGCCTTACCGGTTAGCCCAGG	10	+	90144211-90144214:90144215-90144260	10q32.1	Rattus norvegicus tubulin, gamma 1 (Tubg1), mRNA.	A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence IEA]; A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome [goid 242] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence IEA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species [goid 930] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence TAS]; Any of the spindle microtubules that come from each pole and overlap at the spindle midzone. This interdigitating structure consisting of antiparallel microtubules is responsible for pushing the poles of the spindle apart [goid 5827] [evidence ISS]; Any of the spindle microtubules that come from each pole and overlap at the spindle midzone. This interdigitating structure consisting of antiparallel microtubules is responsible for pushing the poles of the spindle apart [goid 5827] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IEA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle [goid 212] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle [goid 212] [evidence ISS]; Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell [goid 7020] [evidence TAS]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16258822-S	ILMN_285564	IGF1R	NM_052807.1	NM_052807.1		25718	16258822	NM_052807.1	Igf1r	NP_434694.1	ILMN_1374575	0000670524	S	4272	CCTCCTGTATCTCAGTGGATCTTCAGAACTGCCCTTGCTGCCCACGGGAG	1	+	122989586-122989635	1q22	Rattus norvegicus insulin-like growth factor I receptor (Igf1r), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The specification and formation of anisotropic intracellular organization or cell growth patterns [goid 30010] [evidence IMP]; The specification of male sex of an individual organism [goid 30238] [evidence IEA]; The specification of male sex of an individual organism [goid 30238] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 5010] [evidence TAS];  [goid 5010] [evidence ISS]; Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence TAS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with insulin-like growth factor I [goid 31994] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence ISS]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence ISS]; Interacting selectively with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 43559] [evidence ISS]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence IPI]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence ISS]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence ISS]	JTK13; IGFIRC	JTK13; IGFIRC
Rattus norvegicus	RefSeq	GI_62643618-S	ILMN_56474	CETN4_PREDICTED	XM_342234.2	XM_342234.2		361934	62643618	XM_342234.2	Cetn4_predicted	XP_342235.2	ILMN_1353048	0006100068	S	313	CCTACTTGCGCGCGGCATCCAGCCATCGCACAACTTTAGACCAATGGAAG					PREDICTED: Rattus norvegicus centrin 4 (predicted) (Cetn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661890-S	ILMN_66538	TCRVA8	XM_577417.1	XM_577417.1		290116	62661890	XM_577417.1	TCRVA8	XP_577417.1	ILMN_1358220	0003520148	S	272	GCTTCTGCCTCAAGCCTTCACCATCAGCATACACAGAAAGAGGAGCAATG				15p14	PREDICTED: Rattus norvegicus similar to TRAV6D-6 (TCRVA8), mRNA.					
Rattus norvegicus	RefSeq	GI_62645811-S	ILMN_53827	LOC499884	XM_575229.1	XM_575229.1		499884	62645811	XM_575229.1	LOC499884	XP_575229.1	ILMN_1355532	0004070601	S	5801	AGGGCGGTACAGACTTGGAATTGTGACTCAGTCCTGCTTGTACCCAGGCG					PREDICTED: Rattus norvegicus similar to transient receptor potential phospholipase C interacting kinase (LOC499884), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662033-I	ILMN_55791	ABCC4	XM_344458.2	XM_344458.2		170924	62662033	XM_344458.2	Abcc4	XP_344459.2	ILMN_1376192	0002350739	S	4703	GGACACTCACAGTGCGGCCCTTCTCGCAGACAGTGCGTTGATCTCATACA				15q24	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 4 (Abcc4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The lipid bilayer surrounding the platelet dense granule [goid 31088] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242252-S	ILMN_274291	NDST1	NM_024361.1	NM_024361.1		29633	13242252	NM_024361.1	Ndst1	NP_077337.1	ILMN_1360817	0000050670	S	3838	CACCTGGATGTGACCTGTGGTGTTTCCTGTGGTAAAGGCTGAGGCGAGTC	18	-	56639049-56639098	18q12.1	Rattus norvegicus N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 (Ndst1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages [goid 271] [evidence ISS]; The addition of a sulfate group as an ester to a protein amino acid [goid 6477] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties [goid 30203] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process by which the anatomical structures of neurocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The neurocranium is the portion of the vertebrate skull surrounding the brain [goid 48702] [evidence ISS]; The process by which the anatomical structures of viscerocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The viscerocranium is the part of the skull comprising the facial bones [goid 48703] [evidence ISS]	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + N-desulfoheparin = adenosine 3',5'-bisphosphate + heparin [goid 15016] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Hsst	Hsst
Rattus norvegicus	RefSeq	GI_13027383-S	ILMN_290968	INDO	NM_023973.1	NM_023973.1		66029	13027383	NM_023973.1	Indo	NP_076463.1	ILMN_1362663	0006370082	S	1105	GGCCACAAGTCAGAAGAGCCCTCAAACACGGAAAACAGAGGGACTGGGGG	16	+	71878254-71878303	16q12.5	Rattus norvegicus indoleamine-pyrrole 2,3 dioxygenase (Indo), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process that activates or increases the frequency, rate, or extent of T cell tolerance induction [goid 2666] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of a chronic inflammatory response [goid 2678] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of a T-helper 2 type immune response [goid 2830] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine [goid 19441] [evidence IEA]; The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine [goid 4833] [evidence ISS]; Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine [goid 4833] [evidence IEA]; Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine [goid 4833] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the reaction: tryptophan + O2 = N-formylkynurenine; includes both reactions D-tryptophan + O2 = N-formyl-D-kynurenine and L-tryptophan + O2 = N-formyl-L-kynurenine [goid 33754] [evidence IDA]; Catalysis of the reaction: tryptophan + O2 = N-formylkynurenine; includes both reactions D-tryptophan + O2 = N-formyl-D-kynurenine and L-tryptophan + O2 = N-formyl-L-kynurenine [goid 33754] [evidence IDA]; Catalysis of the reaction: tryptophan + O2 = N-formylkynurenine; includes both reactions D-tryptophan + O2 = N-formyl-D-kynurenine and L-tryptophan + O2 = N-formyl-L-kynurenine [goid 33754] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ido	Ido
Rattus norvegicus	RefSeq	GI_62646184-S	ILMN_49429	LOC366221	XM_345452.2	XM_345452.2		366221	62646184	XM_345452.2	LOC366221	XP_345453.2	ILMN_1356123	0002480373	S	1553	TCGTTCTGTACGAAGAGTACTAAGGAGACAGTGGTCCTGGAGGCACTCAG					PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC366221), mRNA.					
Rattus norvegicus	RefSeq	GI_16758467-S	ILMN_53626	DNM1L	NM_053655.2	NM_053655.2		114114	77917613	NM_053655.2	Dnm1l	NP_446107.2	ILMN_1365756	0003940670	S	3057	CAAGTACATCGATTGCAGTCCAGATGCACCTTAGGGTGGGGCGCTGACTC	11	-	86616620-86616669	11q23	Rattus norvegicus dynamin 1-like (Dnm1l), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The change in the morphology of the mitochondria in an apoptotic cell from a highly branched network to a fragmented vesicular form [goid 43653] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 18250306] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	DLP1; Dnml1	DLP1; Dnml1
Rattus norvegicus	RefSeq	GI_62665256	ILMN_278678	TXNL4B	NM_001013891.1	NM_001013891.1		292008	62078516	NM_001013891.1	Txnl4b	NP_001013913.1	ILMN_1650324	0003060100	S	1071	AGGGACAGGGCTCCCCAGAAAGCAGTGCCACCACCCCTTATTTCAAGGAC	19	+	39441286-39441335	19q12	Rattus norvegicus thioredoxin-like 4B (Txnl4b), mRNA.	A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]		MGC109322; RGD1305127	MGC109322; RGD1305127
Rattus norvegicus	RefSeq	GI_62718085-S	ILMN_64802	LOC501287	XM_576702.1	XM_576702.1		501287	62718085	XM_576702.1	LOC501287	XP_576702.1	ILMN_1356785	0005690471	S	989	CCTGGGACCTGGTAGACTTAGTGGGACTTGGGAATAGGAATGGGAGAAAG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501287), mRNA.					
Rattus norvegicus	RefSeq	GI_47576196-S	ILMN_265680	OLR1346	NM_001000520.1	NM_001000520.1		316633	47576196	NM_001000520.1	Olr1346	NP_001000520.1	ILMN_1355836	0002120035	S	252	TGTCCCCAAAGCCATGGCCAACTTACTTTCTTCCACTAAGGTCATCAGCT	9	+	91765539-91765588	9q36	Rattus norvegicus olfactory receptor 1346 (Olr1346), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr9-91970057-91971028_ORF	ratchr9-91970057-91971028_ORF
Rattus norvegicus	RefSeq	GI_47576738-S	ILMN_298297	OLR1766	NM_001000490.1	NM_001000490.1		302823	47576738	NM_001000490.1	Olr1766	NP_001000490.1	ILMN_1365673	0004540132	S	742	GGGACTCTGGGCATTGTCTATGGGTTCCCATCAGTGCCTCGGTATGAACG	X	-	136390950-136390999	Xq36	Rattus norvegicus olfactory receptor 1766 (Olr1766), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1766; ratchrX-136465174-136464242_ORF	Olr1766; ratchrX-136465174-136464242_ORF
Rattus norvegicus	RefSeq	GI_62644346-S	ILMN_48779	RGD1309110_PREDICTED	XM_227568.3	XM_227568.3		295352	109465411	XM_227568.3	RGD1309110_predicted	XP_227568.3	ILMN_1368745	0002260717	S	1176	CCCATTTCCCCTGACCTCCACCTTGAAGAACGCCCTCAAAGTGCACAGTG	2	-	201645488-201645537	2q34	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC58999 (predicted) (RGD1309110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643330-S	ILMN_281164	LOC685878	XM_001065605.1	XM_001065605.1		685878	109464738	XM_001065605.1	LOC685878	XP_001065605.1	ILMN_1360294	0005910292	S	1116	CGGCTACGGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAACCTG	2	-	120932934-120932983	2q25	PREDICTED: Rattus norvegicus hypothetical protein LOC685878 (LOC685878), mRNA.					
Rattus norvegicus	RefSeq	GI_62665799-S	ILMN_66640	RGD1305633_PREDICTED	XM_228076.4	XM_228076.4		309673	109509238	XM_228076.4	RGD1305633_predicted	XP_228076.4	ILMN_1367569	0004780685	S	2188	CCCGGCCAGCACGCCTCTATCAACCATGAAGCTACCAGCAACTACCCCAA	20	+	10477477-10477526	20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2600005C20 (predicted) (RGD1305633_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302130-S	ILMN_266543	EML2	NM_138921.1	NM_138921.1		192360	20302130	NM_138921.1	Eml2	NP_620276.1	ILMN_1352930	0005550463	S	2208	CAATGCTGTGGCCCGCTCTCACGATGGGAACTTGCTGGTTTCTGCTGACG	1	+	78567835-78567884	1q21	Rattus norvegicus echinoderm microtubule associated protein like 2 (Eml2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Emap-2	Emap-2
Rattus norvegicus	RefSeq	GI_62638310-S	ILMN_65827	DUFD1_PREDICTED	XM_218781.3	XM_218781.3		308720	62638310	XM_218781.3	Dufd1_predicted	XP_218781.3	ILMN_1367591	0006900050	S	1679	GGGTGCATCGGCAGGGTGCGGTTGGCTTGTTCACATCCCTGTAGGATTCT					PREDICTED: Rattus norvegicus DUF729 domain containing 1 (predicted) (Dufd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56912211-S	ILMN_66000	EIF1A	NM_001008773.2	NM_001008773.2		317163	65301493	NM_001008773.2	Eif1a	NP_001008773.2	ILMN_1369816	0006940280	S	560	AGCAATGTGCTTTGACGGTGTGCGGAGGCTGTGCCACATAAGAGGGAAGT	18	+	40818146-40818195	18q11	Rattus norvegicus eukaryotic translation initiation factor 1A (Eif1a), mRNA.		The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663708-S	ILMN_64308	LOC498771	XM_574057.1	XM_574057.1		498771	62663708	XM_574057.1	LOC498771	XP_574057.1	ILMN_1372930	0002350022	S	559	GACGGGATTGGAAAAAGACACTTTTCTTGACTGCCTGAGCTCCAACCCTT					PREDICTED: Rattus norvegicus similar to CG6715-PA (LOC498771), mRNA.					
Rattus norvegicus	RefSeq	GI_62663839-S	ILMN_49144	RGD1561562_PREDICTED	XM_577585.2	XM_577585.2		502134	109505012	XM_577585.2	RGD1561562_predicted	XP_577585.1	ILMN_1353202	0005700433	S	211	GCCGCCCCTAAGCTGTGCCTCTTGATATGTAACTGGTTCATCAATGCCCG	17	+	54810500-54810523:54812300-54812325	17q12.1	PREDICTED: Rattus norvegicus similar to TGFB-induced factor 2 (predicted) (RGD1561562_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648206-S	ILMN_293524	LOC500331	NM_001024337.1	NM_001024337.1		500331	66730460	NM_001024337.1	LOC500331	NP_001019508.1	ILMN_1362892	0001990593	S	1028	GGGAGTTCAGGTTACTGGATCGGCCTGCATAGAGAATCATCAGCAGACCC	4	+	165773648-165773697	4q42	Rattus norvegicus similar to osteoclast inhibitory lectin (LOC500331), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659917-S	ILMN_55482	RGD1565282_PREDICTED	XM_573534.2	XM_573534.2		498305	109498352	XM_573534.2	RGD1565282_predicted	XP_573534.2	ILMN_1349658	0005270315	S	912	CGACCACCTTCATGTGGCCAGAGAGGCATTCAAGCAAGAGGAACGGATGC	13	-	103228639-103228688	13q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930513F16 (predicted) (RGD1565282_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663942-S	ILMN_62353	DNAJC1_PREDICTED	XM_214522.3	XM_214522.3		291369	62663942	XM_214522.3	Dnajc1_predicted	XP_214522.3	ILMN_1356200	0006900746	S	1385	GGAGGTAGTAACCAGGGTGGAACCAGAGGAGAAGCTGAGAGGAAAGAGGC					PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 1 (predicted) (Dnajc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648801-S	ILMN_264273	TOPORS_PREDICTED	XM_001058041.1	XM_001058041.1		362501	109476255	XM_001058041.1	Topors_predicted	XP_001058041.1	ILMN_1371948	0004670072	S	3220	CCCACCGAGCCATCAAGACCATTGCCATCTCCACGGACCTCATTATCCTC				5q22	PREDICTED: Rattus norvegicus topoisomerase I binding, arginine/serine-rich (predicted) (Topors_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650404-A	ILMN_286173	SNX17	NM_001011981.1	NM_001011981.1		298836	58865529	NM_001011981.1	Snx17	NP_001011981.1	ILMN_1376755	0006860059	S	1678	GGCTGCACAAAAGATCACCGTCTCTGTGTCAGAGCTGGCCCTTGATGCCA				6q14	Rattus norvegicus sorting nexin 17 (Snx17), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656155-S	ILMN_51270	CIAS1_PREDICTED	XM_220513.4	XM_220513.4		287362	109488151	XM_220513.4	Cias1_predicted	XP_220513.4	ILMN_1362786	0002340411	S	3351	CTTGAGCAACAACGACCTGGGCGATCTGTGTGTGGTGACGCTCTGTGAGG	10	+	45873883-45873932	10q22	PREDICTED: Rattus norvegicus cold autoinflammatory syndrome 1 homolog (human) (predicted) (Cias1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660710-S	ILMN_51012	PLA2G3_PREDICTED	XM_223553.4	XM_223553.4		289733	109499969	XM_223553.4	Pla2g3_predicted	XP_223553.3	ILMN_1372233	0005700451	S	1568	GCCAATGTCTGCAACTAACCCAGGCAATCTGGAGACCCGGGGGACAGAAG	14	+	84124534-84124583	14q21	PREDICTED: Rattus norvegicus phospholipase A2, group III (predicted) (Pla2g3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981477-S	ILMN_302122	ROCK2	NM_013022.1	NM_013022.1		25537	6981477	NM_013022.1	Rock2	NP_037154.1	ILMN_1359238	0002260021	S	4167	CCATTCGGCGGCCCAGTCGACAGCTTGCTCCAAACAAACCAAGCTAACTT	6	+	40667184-40667227:40672599-40672602:40672603-40672604	6q15-q16	Rattus norvegicus Rho-associated coiled-coil containing protein kinase 2 (Rock2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells [goid 30261] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence TAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ROK	ROK
Rattus norvegicus	RefSeq	GI_62653190-S	ILMN_63133	KBTBD3_PREDICTED	XM_235782.4	XM_235782.4		315394	109483037	XM_235782.4	Kbtbd3_predicted	XP_235782.2	ILMN_1350553	0006760093	S	1886	TACCACAGTAGTAGGTCAGAGTGGGAAGAGGTGTCACCAATGCCAAGAGC	8	+	881584-881633	8q11	PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain containing 3 (predicted) (Kbtbd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644552-S	ILMN_285039	IFI44	XM_001079908.1	XM_001079908.1		310969	109467777	XM_001079908.1	Ifi44	XP_001079908.1	ILMN_1366970	0004540487	S	1269	GATTCAGAGTGGCAGCTGGACCCAGTGAAGAACATGCTGATCCTCTCAGC				2q45	PREDICTED: Rattus norvegicus interferon-induced protein 44 (Ifi44), mRNA.					
Rattus norvegicus	RefSeq	GI_62661874-S	ILMN_65717	LOC364333	XM_344357.2	XM_344357.2		364333	62661874	XM_344357.2	LOC364333	XP_344358.2	ILMN_1368093	0002470484	S	710	AAGGGTGCAGGAATGCTGGGGGCTGAGGGTGTCTGTGAGGGAGCATAAGA				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region CTL-F3 precursor (LOC364333), mRNA.					
Rattus norvegicus	RefSeq	GI_62655722-S	ILMN_283815	RGD1566009_PREDICTED	XM_001079342.1	XM_001079342.1		302953	109489729	XM_001079342.1	RGD1566009_predicted	XP_001079342.1	ILMN_1372685	0000540619	S	4991	TTGGGGCTGCCTTGGAGTCTGTAGGCGAAGACAAGGATGAGGAGGATGGC				10q12	PREDICTED: Rattus norvegicus similar to BTB (PO)Z domain containing 12 (predicted) (RGD1566009_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_26024220-S	ILMN_278033	PRSS12	NM_053504.1	NM_053504.1		85266	26024220	NM_053504.1	Prss12	NP_445956.1	ILMN_1363261	0002030706	S	2337	AAGCCCGATGAAACTTGGGTTGTGTATGGGGTGACTTCCTGGGGGTACGG	2	+	220254340-220254389	2q42	Rattus norvegicus protease, serine, 12 neurotrypsin (motopsin) (Prss12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Nt	Nt
Rattus norvegicus	RefSeq	GI_62658974-S	ILMN_58863	RGD1566317_PREDICTED	XM_213790.4	XM_213790.4		288689	109495986	XM_213790.4	RGD1566317_predicted	XP_213790.4	ILMN_1374120	0000460095	S	705	TGCACATCCGCTTCCTCAACATGGAGACCATTGCCCTCTGCCACTGATCG	12	-	39669866-39669869:39669870-39669915	12q16	PREDICTED: Rattus norvegicus similar to Tescalcin (predicted) (RGD1566317_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657828-S	ILMN_56681	LOC497679	XM_579739.1	XM_579739.1		497679	62657828	XM_579739.1	LOC497679	XP_579739.1	ILMN_1353467	0004540528	S	393	GGGGCTGATGGATTCTCATCATATGACTTACTTTCGTGAAATGCCACCAA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_207612 (LOC497679), mRNA.					
Rattus norvegicus	RefSeq	GI_62646249-S	ILMN_267212	LOC684012	XM_001068510.1	XM_001068510.1		684012	109471213	XM_001068510.1	LOC684012	XP_001068510.1	ILMN_1363794	0001410128	S	634	GGGCCCTTGAAGATGATTGTGGACACCAGAGGGCCAGGAGTGGACAACAA					PREDICTED: Rattus norvegicus hypothetical protein LOC684012 (LOC684012), mRNA.					
Rattus norvegicus	RefSeq	GI_6981115-S	ILMN_289833	KCNA4	NM_012971.1	NM_012971.1		25469	6981115	NM_012971.1	Kcna4	NP_037103.1	ILMN_1355700	0006550670	S	2957	ATCTGAACAACCGATCTACAAAGGGACTACGAAGTAACGTTCAGCAGCCG	3	+	92784751-92784800	3q33	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 4 (Kcna4), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv1.4; RK3; RHK1; Kv4; KCHAN	Kv1.4; RK3; RHK1; Kv4; KCHAN
Rattus norvegicus	RefSeq	GI_52138623-S	ILMN_273335	SLC25A20	NM_053965.2	NM_053965.2		117035	52138623	NM_053965.2	Slc25a20	NP_446417.2	ILMN_1372866	0006770064	S	1633	GACAGCCCCAGCCTCCTGGGATAAGTGTGAAAGCCACAATGTAGGAAGGC	8	+	113736942-113736991	8q32	Rattus norvegicus solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 (Slc25a20), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence TAS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence NAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The transfer of acyl groups to and from acyl-CoA molecules to form O-acylcarnitine, which can exchange across the mitochondrial inner membrane with unacylated carnitine [goid 6853] [evidence ISS]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of acyl carnitine into, out of, within or between cells. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane [goid 15227] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC93269	MGC93269
Rattus norvegicus	RefSeq	GI_62647344-S	ILMN_62579	LANCL2_PREDICTED	XM_216158.3	XM_216158.3		297148	62647344	XM_216158.3	Lancl2_predicted	XP_216158.3	ILMN_1370670	0003060088	S	2760	GGCTGCAGTGTCATCCCATGAGGGAAAGGAGAAATGGCATGTGAATCAGG					PREDICTED: Rattus norvegicus LanC (bacterial lantibiotic synthetase component C)-like 2 (predicted) (Lancl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393483-S	ILMN_283876	GRIN1	NM_017010.1	NM_017010.1		24408	8393483	NM_017010.1	Grin1	NP_058706.1	ILMN_1365529	0006520092	S	3990	CTTCTGTCCGCAGCCACAATAGGCTTCCTCAGACGCTGGCTCGTGATGAG	3	-	3453909-3453958	3p13	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate 1 (Grin1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence TAS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released [goid 43083] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence ISS]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IEA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 17003121] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 15681343] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus [goid 1661] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence TAS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue [goid 8355] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 10646] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for the pons to attain its fully functional state. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum [goid 21586] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IEA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment [goid 43576] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IDA]; Any process that modulates the frequency, rate or extent of dendrite morphogenesis [goid 48814] [evidence ISS]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]; The specific actions or reactions of a male organism that are associated with reproduction [goid 60179] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IEA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence TAS];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IDA];  [goid 4972] [evidence TAS];  [goid 4972] [evidence ISS];  [goid 4972] [evidence ISS];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IEA];  [goid 4972] [evidence IMP]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence ISS]; Catalysis of the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion [goid 22843] [evidence IMP]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA];  [goid 4972] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4972] [pmid 7929101] [evidence IGI]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17658481] [evidence IPI]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [pmid 8011339] [evidence IDA]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [pmid 8011339] [evidence IDA]	NR1; NMDAR1	NR1; NMDAR1
Rattus norvegicus	RefSeq	GI_62643783-S	ILMN_64704	RAG1AP1_PREDICTED	XM_215626.4	XM_215626.4		295245	109465059	XM_215626.4	Rag1ap1_predicted	XP_215626.3	ILMN_1371416	0006040739	S	439	TGCAGTGTCTTTACTATCAGCATGTACCTCTCCCCACTGGCCGACTTGGC	2	-	181441443-181441445:181441668-181441714	2q34	PREDICTED: Rattus norvegicus recombination activating gene 1 activating protein 1 (predicted) (Rag1ap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643763-S	ILMN_63716	MSTO1_PREDICTED	XM_215631.4	XM_215631.4		295237	109465069	XM_215631.4	Msto1_predicted	XP_215631.4	ILMN_1373228	0005860017	S	1225	ATTCTGCCGGACATCGGTGCTTTGCCCAGTCTGTGGTGCTCAGGGGCATA	2	-	180975078-180975127	2q34	PREDICTED: Rattus norvegicus misato homolog 1 (Drosophila) (predicted) (Msto1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643761-S	ILMN_63716	MSTO1_PREDICTED	XM_215631.4	XM_215631.4		295237	109465069	XM_215631.4	Msto1_predicted	XP_215631.4	ILMN_1361759	0005690121	S	1582	CCCAAGTCTCTTAGTGTCCGCTGCAAGGATGAAGTTGAACGCAAGGCCCC	2	-	180974203-180974252	2q34	PREDICTED: Rattus norvegicus misato homolog 1 (Drosophila) (predicted) (Msto1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424243-S	ILMN_295083	BRP44L	NM_133561.1	NM_133561.1		171087	19424243	NM_133561.1	Brp44l	NP_598245.1	ILMN_1365165	0007050181	S	469	GTCGTGCTGAGGGGAAAACACGGAAGACTATCTTTAATGACCATGCCAAC	1	-	47078093-47078142	1q11	Rattus norvegicus brain protein 44-like (Brp44l), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62655037-S	ILMN_270827	RGD1562317_PREDICTED	XM_001063359.1	XM_001063359.1		301388	109487094	XM_001063359.1	RGD1562317_predicted	XP_001063359.1	ILMN_1355674	0001690504	S	2458	GAGACCCCAACCCTGACCATGCCTCTGCAAGGGGAACACTGTAACGCACA				9q22	PREDICTED: Rattus norvegicus similar to expressed sequence AW212394 (predicted) (RGD1562317_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507242-S	ILMN_293718	YWHAB	NM_019377.1	NM_019377.1		56011	9507242	NM_019377.1	Ywhab	NP_062250.1	ILMN_1350344	0003170121	S	2411	GCAGCAGCGAGTGTGGACCAAGCCTGTCTGTATCTGGTAGCTCTTCGCTC	3	+	154948174-154948223	3q42	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 9560161] [evidence EXP]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]	14-3-3proteinbeta-subtype; 3- monooxygenase/tryptophan5monooxygenaseactivationproteinbet apolypeptide	14-3-3proteinbeta-subtype; 3- monooxygenase/tryptophan5monooxygenaseactivationproteinbet apolypeptide
Rattus norvegicus	RefSeq	GI_62662547-S	ILMN_57614	LOC364542	XM_577504.1	XM_577504.1		364542	62662547	XM_577504.1	LOC364542	XP_577504.1	ILMN_1365656	0000840333	S	471	GAGCAGCAGACCTCAGAATGGACAGATCTCATGCCTGTGTGCAGCCAGAC					PREDICTED: Rattus norvegicus similar to DNA methyltransferase 3A isoform 1 (LOC364542), mRNA.					
Rattus norvegicus	RefSeq	GI_47576886-S	ILMN_266463	OLR224	NM_001000553.1	NM_001000553.1		365342	47576886	NM_001000553.1	Olr224	NP_001000553.1	ILMN_1350072	0004810619	S	650	CCTACATCTACATAGTGTCCACCATTCTGCGCATACCCTCCACCCAGGGA	1	-	164242194-164242243	1q33	Rattus norvegicus olfactory receptor 224 (Olr224), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr224	Olr224
Rattus norvegicus	RefSeq	GI_47577844-S	ILMN_274424	OLR11	NM_001000114.1	NM_001000114.1		293070	47577844	NM_001000114.1	Olr11	NP_001000114.1	ILMN_1367490	0004920110	S	803	CTCCTGGCAGAGACAGACTCATCTCTATGTTGTATGCAGTTGTCACCCCC	1	+	141498524-141498573	1q32	Rattus norvegicus olfactory receptor 11 (Olr11), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr11; ratchr1-141576128-141577075_ORF	Olr11; ratchr1-141576128-141577075_ORF
Rattus norvegicus	RefSeq	GI_62653013-S	ILMN_52541	RGD1560560_PREDICTED	XM_576336.2	XM_576336.2		500927	109481264	XM_576336.2	RGD1560560_predicted	XP_576336.2	ILMN_1349739	0002190270	S	426	CGCTCAGATCATAAGTCGTCAGGTGTGTATCAGGCTGGTGGTGATTTCCT	7	-	136959315-136959364	7q36	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr286 (predicted) (RGD1560560_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652845-S	ILMN_278821	RGD1309065_PREDICTED	XM_001077962.1	XM_001077962.1		315179	109482653	XM_001077962.1	RGD1309065_predicted	XP_001077962.1	ILMN_1366881	0004570731	S	4257	GCGGCGTACCTTCAAGACCTATGATGAGAATGGAACGGGGCTCCTGAGTG				7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931407K02 (predicted) (RGD1309065_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663567-S	ILMN_280947	LOC498750	NM_001017510.1	NM_001017510.1		498750	62945375	NM_001017510.1	LOC498750	NP_001017510.1	ILMN_1355534	0005340605	S	1881	GCAGATCTGGAGTCTGGTGTGGCTGAAGCAGCTACAAAACCGAGGAACAG	17	-	47318255-47318304	17p11	Rattus norvegicus similar to cDNA sequence BC005537 (LOC498750), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62651270-S	ILMN_276684	AMN_PREDICTED	XM_001071620.1	XM_001071620.1		314459	109480012	XM_001071620.1	Amn_predicted	XP_001071620.1	ILMN_1359940	0000730075	S	1420	ACCAACTTCGGCTGCTTCGTTAACCCACTCTTTGCTGGGGAGGCAGAGGC				6q32	PREDICTED: Rattus norvegicus amnionless (predicted) (Amn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643545-S	ILMN_52695	LOC499634	XM_574957.1	XM_574957.1		499634	62643545	XM_574957.1	LOC499634	XP_574957.1	ILMN_1367772	0000510575	S	973	GCGTATACAGCATGTACCTAGATGATGCCCAGGTGAAGAGGAAGGACTGG					PREDICTED: Rattus norvegicus similar to Aldose reductase-related protein 2 (AR) (Aldehyde reductase) (Fibroblast growth factor regulated protein) (FR-1 protein) (LOC499634), mRNA.					
Rattus norvegicus	RefSeq	GI_62659463-S	ILMN_49215	IVNS1ABP_PREDICTED	XM_213898.4	XM_213898.4		289089	109497955	XM_213898.4	Ivns1abp_predicted	XP_213898.2	ILMN_1363255	0006020273	S	3316	CTTACTCACCTGGATTGACTGGTTGGGGTGACTCGGTGTCTGTGTAGTGC	13	+	66236422-66236471	13q21	PREDICTED: Rattus norvegicus influenza virus NS1A binding protein (predicted), transcript variant 2 (Ivns1abp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651702-S	ILMN_264126	MRPL54_PREDICTED	XM_001075791.1	XM_001075791.1		299628	109481535	XM_001075791.1	Mrpl54_predicted	XP_001075791.1	ILMN_1365212	0000510593	S	329	TGGGTCCCCCCAAAAAGCTAGAGGACCTAGAACCGGAGTCCCGAGAGTAC				7q11	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L54 (predicted) (Mrpl54_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657408-S	ILMN_62246	LOC501738	XM_577139.1	XM_577139.1		501738	62657408	XM_577139.1	LOC501738	XP_577139.1	ILMN_1369718	0001410047	S	67	GGCCAGGGTACAGGCATGCAGGGGTTAATAGCAGACTGGCCCTCAGAGAA				10q32.2	PREDICTED: Rattus norvegicus similar to CLM7 (LOC501738), mRNA.					
Rattus norvegicus	RefSeq	GI_62662436-S	ILMN_275927	GDF1_PREDICTED	XM_001071020.1	XM_001071020.1		306351	109504001	XM_001071020.1	Gdf1_predicted	XP_001071020.1	ILMN_1360218	0000610091	S	1267	CTGGAAGACTTGCGGGAATACGACAGTCTGGAAGCGCAGACAGCCAAGCC				16p14	PREDICTED: Rattus norvegicus growth differentiation factor 1 (predicted) (Gdf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662434-S	ILMN_275927	GDF1_PREDICTED	XM_001071020.1	XM_001071020.1		306351	109504001	XM_001071020.1	Gdf1_predicted	XP_001071020.1	ILMN_1374865	0001780091	S	2814	ACATGGTGGTGGATGAGTGTGGCTGTCGCTGACCACCCAGGACACCCTTT				16p14	PREDICTED: Rattus norvegicus growth differentiation factor 1 (predicted) (Gdf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662432-S	ILMN_275927	GDF1_PREDICTED	XM_001071020.1	XM_001071020.1		306351	109504001	XM_001071020.1	Gdf1_predicted	XP_001071020.1	ILMN_1365254	0001240397	S	2998	AGCCACCCAACCCCTACCCAGGCACACCTGCGCCAACGCAATGGAACTTA				16p14	PREDICTED: Rattus norvegicus growth differentiation factor 1 (predicted) (Gdf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666232-S	ILMN_64313	LOC294473	XM_228242.3	XM_228242.3		294473	62666232	XM_228242.3	LOC294473	XP_228242.3	ILMN_2038846	0004070189	S	972	GCCTCTCTCTCAAGAAGAATATGAGGGTGGGAGGCGTGGCAGGTGTAAAG					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC294473), mRNA.					
Rattus norvegicus	RefSeq	GI_34882704-S	ILMN_302948	LOC363181	XM_001061883.1	XM_001061883.1		363181	109513629	XM_001061883.1	LOC363181	XP_001061883.1	ILMN_1373894	0003140300	S	612	GACCCCAGTGCCAAGCAACAGCAGGTCTGAAGTTCTCCAGCAGAAACTGG	Un|NW_047892.1	+	54689-54712:58489-58494:58495-58514		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC363181), mRNA.					
Rattus norvegicus	RefSeq	GI_62718439-S	ILMN_302948	LOC363181	XM_001061883.1	XM_001061883.1		363181	109513629	XM_001061883.1	LOC363181	XP_001061883.1	ILMN_1359502	0004610017	S	867	TGGAGGAAGTCAGAGAAGTGTTGATGCACATCAATCAAGAGCTGCTGGTC	Un|NW_047892.1	+	58720-58769		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC363181), mRNA.					
Rattus norvegicus	RefSeq	GI_25742637-S	ILMN_266249	CTCF	NM_031824.1	NM_031824.1		83726	25742637	NM_031824.1	Ctcf	NP_114012.1	ILMN_1370286	0006220242	S	3257	GTTAAAGCCAGAAGAGTTGATTATGAGTGGGCACAGCGACCCTGGGAAGC	19	+	35514664-35514713	19q12	Rattus norvegicus CCCTC-binding factor (zinc finger protein) (Ctcf), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence ISS]; Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself [goid 6349] [evidence ISS]; Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself [goid 6349] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in maintaining the methylation state of a nucleotide sequence [goid 10216] [evidence ISS]; Any process involved in maintaining the methylation state of a nucleotide sequence [goid 10216] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653928-S	ILMN_287808	RGD1311103_PREDICTED	XR_007793.1	XR_007793.1		301100	109485029	XR_007793.1	RGD1311103_predicted		ILMN_1368735	0002640592	S	484	TGACTTGCAGCCCGCCTCTGCTGGAGGGAAGAGAAGCACGGATGGATTCT				8q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410146L05 (predicted) (RGD1311103_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644945-S	ILMN_56934	PTGES2_PREDICTED	XM_231144.4	XM_231144.4		311865	109468026	XM_231144.4	Ptges2_predicted	XP_231144.1	ILMN_1356563	0005910670	S	1330	GGTCTGGGGGTCACAAAGGACTACCCTCCAATCCCAGTTCCAGAGCCTGA	3	+	11528175-11528224	3p11	PREDICTED: Rattus norvegicus prostaglandin E synthase 2 (predicted) (Ptges2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665235-S	ILMN_268065	RGD1562833_PREDICTED	XR_009098.1	XR_009098.1		365000	109508850	XR_009098.1	RGD1562833_predicted		ILMN_1362222	0006220110	S	145	CTCTGAGGAGTCCCAAGCACGGATGCAGGGGGATTATGACAGTGTGGAGC				19q12	PREDICTED: Rattus norvegicus similar to RNA binding motif protein 8 (predicted) (RGD1562833_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777347-A	ILMN_272350	OLR1735	NM_001001397.1	NM_001001397.1		294190	47777347	NM_001001397.1	Olr1735	NP_001001397.1	ILMN_1376378	0006660014	S	575	TCAACCTTTGGTTGCTCAATACAGTCACAGGCACCATTGCCCTCACTCCC	20	+	1350347-1350396	20p12	Rattus norvegicus olfactory receptor 1735 (Olr1735), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or15; Olr1735; ratchr20-1349773-1350699_ORF	Or15; Olr1735; ratchr20-1349773-1350699_ORF
Rattus norvegicus	RefSeq	GI_34858182-S	ILMN_284062	RGD1564513_PREDICTED	XM_345237.1	XM_345237.1		365851	34858182	XM_345237.1	RGD1564513_predicted	XP_345238.1	ILMN_1369355	0005690091	S	529	GGCCTAGGGGATCTATGGGAGAATTCCGTCTTCACAGACTGCAGCCTTGT	2	-	186768250-186768299	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1564513_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652155-S	ILMN_54910	SNRPF_PREDICTED	XM_345814.2	XM_345814.2		366871	62652155	XM_345814.2	Snrpf_predicted	XP_345815.2	ILMN_1350611	0000430341	S	468	GTGGCCTCGCGGGGACGGCTGCACGCTATGCCTTCCATTCATCCACATGA					PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein polypeptide F (predicted) (Snrpf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576848-S	ILMN_299880	OLR209	NM_001000736.1	NM_001000736.1		404995	47576848	NM_001000736.1	Olr209	NP_001000736.1	ILMN_1353366	0005130195	S	755	ATGGGGCTCTCACAGTTATGTACGTCCTACCCAGTTCCTATCTTAGTCCC	1	-	163947969-163948018	1q33	Rattus norvegicus olfactory receptor 209 (Olr209), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr209	Olr209
Rattus norvegicus	RefSeq	GI_17105335-S	ILMN_300756	HADH	NM_057186.1	NM_057186.1		113965	17105335	NM_057186.1	Hadh	NP_476534.1	ILMN_1366070	0000520673	S	1338	AGATGCACCTGAGAGGCCTTGCGTGCCTGGGAACATTTGTAGCCCGCAGC	2	-	228698816-228698865	2q43	Rattus norvegicus hydroxyacyl-Coenzyme A dehydrogenase (Hadh), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence ISS]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence ISS]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]	Hadh	Hadh
Rattus norvegicus	RefSeq	GI_62666579-S	ILMN_61383	LOC497843	XM_579572.1	XM_579572.1		497843	62666579	XM_579572.1	LOC497843	XP_579572.1	ILMN_1353036	0005360128	S	5851	TGCTGCCAGTGACCTGCTGGCACAGAGAACCACCTCCCTTTACAGTGACG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053701 (LOC497843), mRNA.					
Rattus norvegicus	RefSeq	GI_56961639-S	ILMN_266983	PCMT1	NM_013073.3	NM_013073.3		25604	56961639	NM_013073.3	Pcmt1	NP_037205.2	ILMN_1365789	0004730524	S	2201	CGTGGCTTAGGTCTCAGTCCCAGGAAACTAGCATTACCGTGGTCCTGCAG				1p13	Rattus norvegicus protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 (Pcmt1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IEA]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence ISS]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence IDA]	Catalysis of the reaction: S-adenosyl-L-methionine + protein L-beta-aspartate = S-adenosyl-L-homocysteine + protein L-beta-aspartate methyl ester [goid 4719] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + protein L-beta-aspartate = S-adenosyl-L-homocysteine + protein L-beta-aspartate methyl ester [goid 4719] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + protein L-beta-aspartate = S-adenosyl-L-homocysteine + protein L-beta-aspartate methyl ester [goid 4719] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	PCM; MGC95039	PCM; MGC95039
Rattus norvegicus	RefSeq	GI_62661894-S	ILMN_66808	LOC501990	XM_577418.1	XM_577418.1		501990	62661894	XM_577418.1	LOC501990	XP_577418.1	ILMN_1361087	0004730253	S	3557	CTCTGCTGTCTACCTCTGTGCAGGTGGGGCACATTGTTTTGGTATGAAAG				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain precursor V and C regions  (TRA29) - rat (fragment) (LOC501990), mRNA.					
Rattus norvegicus	RefSeq	GI_62661035-S	ILMN_269350	LOC364241	NM_001039516.1	NM_001039516.1		364241	87252700	NM_001039516.1	LOC364241	NP_001034605.1	ILMN_1365014	0003360270	S	1182	TATTAACCAACTGGACCGTATCAGCGAGGAGGGTGAGCCGTGGGAAGCCC	15	+	4422440-4422489	15p16	Rattus norvegicus similar to potassium channel TASK2 (LOC364241), mRNA.				Kcnk5	Kcnk5
Rattus norvegicus	RefSeq	GI_62641343-S	ILMN_281160	ZFP668_PREDICTED	XM_001078786.1	XM_001078786.1		309002	109462924	XM_001078786.1	Zfp668_predicted	XP_001078786.1	ILMN_1355048	0003990278	S	2669	GGGGAGGAGACTGATGAGAAGCCCCCACAGTTTGTGTGTCGAGAGTGCAA				1q36	PREDICTED: Rattus norvegicus zinc finger protein 668 (predicted), transcript variant 1 (Zfp668_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575854-S	ILMN_293943	SOD2	NM_017051.2	NM_017051.2		24787	47575854	NM_017051.2	Sod2	NP_058747.1	ILMN_1367263	0002120411	S	1621	GGCACCTTTTTCAGTAGAGGCAAACGGGTTTCTGAGTGAGGTCAGTAGGG	1	-	41863391-41863440	1q11	Rattus norvegicus superoxide dismutase 2, mitochondrial (Sod2), nuclear gene encoding mitochondrial protein, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence NAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, where the change varies according to the age of the cell or organism [goid 1306] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of reactive oxygen species, where the change varies according to the age of the cell or organism [goid 1315] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The series of events in which an oxygen stimulus is received by a cell and converted into a molecular signal [goid 3032] [evidence ISS]; The process by which acetylcholine signaling causes vasodilation, resulting in a change in blood pressure [goid 3069] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism [goid 10260] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus [goid 14823] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence IDA]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence TAS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence IDA]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22904] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients [goid 31667] [evidence IDA]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEA]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 42743] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of adipocyte differentiation [goid 45599] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an erythrophore cell. Erythrophores are pigment cells derived from the neural crest. They contain pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives them an orange to red appearance [goid 48773] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence IDA]; Any process that modulates the activity of an enzyme [goid 50790] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions [goid 55072] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IDA]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IDA]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506918-S	ILMN_272745	NEUROG1	NM_019207.1	NM_019207.1		29410	9506918	NM_019207.1	Neurog1	NP_062080.1	ILMN_1354430	0002940278	S	1284	GACCCCAGCCACCACTTCAGTGTGATTTGGAAAAGGGACAGATGAGCCCC	17	+	14333919-14333968	17p14	Rattus norvegicus neurogenin 1 (Neurog1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; Any process that activates or increases the rate of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity) [goid 31536] [evidence ISS]; Any process that activates or increases the rate of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity) [goid 31536] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Ngn1	Ngn1
Rattus norvegicus	RefSeq	GI_46485388-S	ILMN_267599	KIRREL	NM_207606.1	NM_207606.1		310695	46485388	NM_207606.1	Kirrel	NP_997489.1	ILMN_1355740	0003710301	S	1955	TGCTATATGCTGACTACCGTGCCCCTGGCCCTACTCGTTTTGATGGGCGC	2	-	179115122-179115171	2q34	Rattus norvegicus kin of IRRE like (Drosophila) (Kirrel), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds [goid 7588] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Neph1	Neph1
Rattus norvegicus	RefSeq	GI_62078606-S	ILMN_285508	RAVER1	NM_001013939.1	NM_001013939.1		298705	62078606	NM_001013939.1	Raver1	NP_001013961.1	ILMN_1366325	0005570446	S	3185	GGCCACTGGACCTCTACCATGTTCCTTCAAACCCAGATCATCACCATCCC	8	-	20097194-20097243	8q13	Rattus norvegicus ribonucleoprotein, PTB-binding 1 (Raver1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664562-S	ILMN_64486	CIDEA_PREDICTED	XM_214551.4	XM_214551.4		291541	109506730	XM_214551.4	Cidea_predicted	XP_214551.4	ILMN_1361879	0000130039	S	1332	TGACACAGAAGAGCAGCCATCCCCCAAGGCTAGCGCCAAAGGCTGGTTCA	18	+	63896663-63896712	18q12.1	PREDICTED: Rattus norvegicus cell death-inducing DNA fragmentation factor, alpha subunit-like effector A (predicted) (Cidea_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675848-S	ILMN_298265	PTAFR	NM_053321.2	NM_053321.2		58949	48675848	NM_053321.2	Ptafr	NP_445773.1	ILMN_1354586	0004540309	S	3026	GACCAGACAGAAGCTAGAACGTGGCGAGAACACTCAGCTTCAGAGGGGCC	5	-	152565925-152565974	5q36	Rattus norvegicus platelet-activating factor receptor (Ptafr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; The chemical reactions and pathways resulting in the formation of inositol trisphosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached [goid 32959] [evidence ISS]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence ISS]	Interacting selectively with lipopolysaccharide [goid 1530] [evidence ISS]; Combining with lipopolysaccharide to initiate a change in cell activity [goid 1875] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with platelet activating factor to initiate a change in cell activity [goid 4992] [evidence IEA]; Combining with platelet activating factor to initiate a change in cell activity [goid 4992] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652128-S	ILMN_262834	FRS2_PREDICTED	XM_001080960.1	XM_001080960.1		314850	109481984	XM_001080960.1	Frs2_predicted	XP_001080960.1	ILMN_1373764	0003990672	S	1576	ATACAGGTGGACTTGGAAGGGGGCAGTGACTCTGACAACCCTCAGACCCC				7q22	PREDICTED: Rattus norvegicus fibroblast growth factor receptor substrate 2 (predicted) (Frs2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978634-A	ILMN_275208	CD59	NM_012925.1	NM_012925.1		25407	6978634	NM_012925.1	Cd59	NP_037057.1	ILMN_1376328	0005550184	S	1195	CATCTCAGTGCTCTGGAGGCAGAGACAGGAGGAGGGCCATAAGTTGAAGG	3	+	89245050-89245099	3q32	Rattus norvegicus Cd59 molecule (Cd59), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs [goid 43218] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade [goid 1971] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade [goid 1971] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Any process that modulates the frequency, rate or extent of complement activation [goid 30449] [evidence NAS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of complement activation [goid 45916] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cytolysis [goid 45918] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cd59a	Cd59a
Rattus norvegicus	RefSeq	GI_62643817-S	ILMN_66492	RGD1304593_PREDICTED	XM_342288.3	XM_342288.3		361988	109465093	XM_342288.3	RGD1304593_predicted	XP_342289.2	ILMN_1350103	0005900095	S	4139	GTAGTCTGTGGACGGCGGTCACTACACCAGTGTGAAATGGGCATCTGACC	2	-	182650450-182650499	2q34	PREDICTED: Rattus norvegicus similar to expressed sequence C77668 (predicted) (RGD1304593_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641867-S	ILMN_289036	INCENP_PREDICTED	XM_001074188.1	XM_001074188.1		293733	109463517	XM_001074188.1	Incenp_predicted	XP_001074188.1	ILMN_1364165	0004590746	S	2886	GCTCAGCCAGGCCATCGTCCACCAGTACTACCACCCCCCAAACATTCTAG				1q43	PREDICTED: Rattus norvegicus inner centromere protein (predicted) (Incenp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667095-S	ILMN_276926	MAGEE1_PREDICTED	XM_001057180.1	XM_001057180.1		317232	109512156	XM_001057180.1	Magee1_predicted	XP_001057180.1	ILMN_1369960	0006040541	S	3445	CAACTGACAAAGCACTAAGTTGTGGCTGGCTTCCCTCTTGTCTGCTATTG				Xq31	PREDICTED: Rattus norvegicus melanoma antigen, family E, 1 (predicted) (Magee1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648821-A	ILMN_288734	UBAP1	NM_001012190.1	NM_001012190.1		362502	58865951	NM_001012190.1	Ubap1	NP_001012190.1	ILMN_1376487	0003830403	S	1371	TGTCTCCGAGTGAGCGGCAGTGTGTAGAGACAGTAGTTAACATGGGCTAC	5	+	58817878-58817927	5q22	Rattus norvegicus ubiquitin-associated protein 1 (Ubap1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62656885-S	ILMN_53149	HOXB13_PREDICTED	XM_220905.3	XM_220905.3		303480	62656885	XM_220905.3	Hoxb13_predicted	XP_220905.3	ILMN_1363953	0002680079	S	1778	GCCCAGCGGTTACAGGGAAGAGCAGTGTCCCACCCTATCCTCAGGCTTTT				10q31	PREDICTED: Rattus norvegicus homeo box B13 (predicted) (Hoxb13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657340-S	ILMN_272851	LOC688258	XM_001081686.1	XM_001081686.1		688258	109492233	XM_001081686.1	LOC688258	XP_001081686.1	ILMN_1356546	0005670022	S	322	GGAAGAGGTGGATGAGCGAGTCTGAGAAGGTGCTGGCTACCATGCCCAAG					PREDICTED: Rattus norvegicus similar to solute carrier family 16, member 5 (LOC688258), mRNA.					
Rattus norvegicus	RefSeq	GI_57977311-S	ILMN_280653	LOC494539	NM_001009977.1	NM_001009977.1		494539	57977311	NM_001009977.1	LOC494539	NP_001009977.1	ILMN_1360905	0006020035	S	166	GTGAGAGGGAATGGAGGAACTGTCCTGTTGTTGTGTGAGGAGGATGGGAG	1	-	97324603-97324642:97324643-97324652	1q22	Rattus norvegicus spectrin beta-like (LOC494539), mRNA.					
Rattus norvegicus	RefSeq	GI_37693502-S	ILMN_276514	MYD88	NM_198130.1	NM_198130.1		301059	37693502	NM_198130.1	Myd88	NP_937763.1	ILMN_1359024	0006860494	S	1781	GGAGAAGCAGTTTGGCTTCACCCCACAAACCAGCTGCAGGATCAGCTGTT	8	-	124300056-124300105	8q32	Rattus norvegicus myeloid differentiation primary response gene 88 (Myd88), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31224] [evidence IEA]; Loosely bound to one surface of the mitochondrial outer membrane, but not integrated into the hydrophobic region [goid 31315] [evidence IEA]	A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octomer oligosaccharide [goid 2238] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octomer oligosaccharide [goid 2238] [evidence ISS]; Any series of molecular signals generated as a consequence of binding to a toll-like receptor and relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2755] [evidence IEA]; Any series of molecular signals generated as a consequence of binding to a toll-like receptor and relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2755] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IMP]; The series of molecular signals initiated by binding of a ligand to an extracellular ligand to the Toll receptor on the surface of the target cell [goid 8063] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence IEA]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IMP]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence IEA]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any type I interferon. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families [goid 45351] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any type I interferon. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families [goid 45351] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with the Toll protein, a transmembrane receptor [goid 5121] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663207-S	ILMN_270260	DDX41_PREDICTED	XM_001064233.1	XM_001064233.1		314336	109505391	XM_001064233.1	Ddx41_predicted	XP_001064233.1	ILMN_1360025	0006980121	S	1592	AATCGGCCGCACTGGGCGCTCAGGAAACACAGGCATTGCCACCACCTTTA				17p14	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 (predicted) (Ddx41_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651161-S	ILMN_49935	SLC24A4_PREDICTED	XM_234470.4	XM_234470.4		314396	109478571	XM_234470.4	Slc24a4_predicted	XP_234470.4	ILMN_1357359	0001570044	S	2713	CCAGTCATTATTTGAACAGCTCCACAGACTCTTGGCTACCAGCTGCGGGG	6	+	126538092-126538141	6q32	PREDICTED: Rattus norvegicus solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 (predicted) (Slc24a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643622-S	ILMN_56646	LOC502527	XM_580252.1	XM_580252.1		502527	62643622	XM_580252.1	LOC502527	XP_580252.1	ILMN_1356158	0001090102	S	584	CAGTCTCGGGCCAAGCGTGTGTAGGGGAAAGAAGCTCCAGAAGGAGGAAG					PREDICTED: Rattus norvegicus LOC502527 (LOC502527), mRNA.					
Rattus norvegicus	RefSeq	GI_56605701-S	ILMN_59575	RGD1308367	NM_001008311.2	NM_001008311.2		295619	71534290	NM_001008311.2	RGD1308367	NP_001008312.1	ILMN_1372576	0004280010	S	1560	CCCATTGCGAAGTTGATCCAGAGAGAGCCTAGATGACTGGTGAGCCACAG	3	-	39822698-39822747	3q21	Rattus norvegicus similar to KIAA1189 protein (RGD1308367), mRNA.				MGC105579; juxtanodin	MGC105579; juxtanodin
Rattus norvegicus	RefSeq	GI_62660856-S	ILMN_58867	PELI1_PREDICTED	XM_223656.3	XM_223656.3		305549	62660856	XM_223656.3	Peli1_predicted	XP_223656.1	ILMN_1371904	0001340402	S	3	GCGTTGGTTCCCAGAGCAATCGGCAGTCTGACGAGAAGGAGGTTTAGCTC				14q22	PREDICTED: Rattus norvegicus pellino homolog 1 (Drosophila) (predicted) (Peli1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32401456-S	ILMN_289900	OPN5	NM_181772.1	NM_181772.1		316259	32401456	NM_181772.1	Opn5	NP_861437.1	ILMN_1352793	0002650068	S	1542	TAAGCATCTGTGTTCTGAGGCCGAGAAACCCCGCAGCTGTCCATCAGGGC	9	+	14171827-14171848:14173092-14173094	9q12	Rattus norvegicus opsin 5 (Opn5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation [goid 9881] [evidence IEA]	Gpr136	Gpr136
Rattus norvegicus	RefSeq	GI_62648245-S	ILMN_59444	LOC500344	XM_575696.1	XM_575696.1		500344	62648245	XM_575696.1	LOC500344	XP_575696.1	ILMN_1366290	0005220538	S	1217	GGAGGGACAAGAAAGTAAATGGACTGATGGTGCCATTGTGGACTGGGAGG					PREDICTED: Rattus norvegicus LOC500344 (LOC500344), mRNA.					
Rattus norvegicus	RefSeq	GI_47576016-S	ILMN_274266	OLR1443	NM_001000018.1	NM_001000018.1		287331	47576016	NM_001000018.1	Olr1443	NP_001000018.1	ILMN_2039079	0005820239	S	853	TTGAACCCATTCATCTATAGCCTGAGGAACAAGGAGGTCATGGGGGTTCT	10	+	44796167-44796216	10q22	Rattus norvegicus olfactory receptor 1443 (Olr1443), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1443	Olr1443
Rattus norvegicus	RefSeq	GI_62663091-S	ILMN_287730	NSUN2_PREDICTED	XM_001057743.1	XM_001057743.1		361191	109460641	XM_001057743.1	Nsun2_predicted	XP_001057743.1	ILMN_1356041	0005690148	S	2778	GGGTGAGGGTAAGCCTGGTGAATCATGACAGCAGTTTTGGGGACCGTTTG				17p14	PREDICTED: Rattus norvegicus NOL1/NOP2/Sun domain family, member 2 (predicted) (Nsun2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659592-S	ILMN_58326	LOC364029	XM_344165.2	XM_344165.2		364029	62659592	XM_344165.2	LOC364029	XP_344166.2	ILMN_1362669	0005220204	S	1572	TCCCGACATCTGAGCCTGTCAAAAAAGATGCGACCTCCCATGACGTGGTC				13q22	PREDICTED: Rattus norvegicus similar to novel protein (LOC364029), mRNA.					
Rattus norvegicus	RefSeq	GI_62643927-S	ILMN_273896	PEX11B	XM_001063078.1	XM_001063078.1		310682	109467231	XM_001063078.1	Pex11b	XP_001063078.1	ILMN_1367466	0005550280	S	1750	GCCCACAGAGCAAGCGAGCCTTCCAGGCCAACAAATTAAAGATCGGTTTG				2q34	PREDICTED: Rattus norvegicus peroxisomal biogenesis factor 11b (Pex11b), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]	The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments [goid 16559] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644067-S	ILMN_275180	BCL9_PREDICTED	XM_001063847.1	XM_001063847.1		310704	109467247	XM_001063847.1	Bcl9_predicted	XP_001063847.1	ILMN_1358329	0002030592	S	3889	CATCCATGCCAGGCCACAGCCCAATGAGACCACCAGCCTTTCTCCAGCAA				2q34	PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 9 (predicted) (Bcl9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661242-S	ILMN_69279	RGD1565031_PREDICTED	XM_573745.2	XM_573745.2		498485	109501506	XM_573745.2	RGD1565031_predicted	XP_573745.1	ILMN_1364789	0006020435	S	1774	CTTGGCTGGGTATCTCTGGCAGCACTAAGGACAGAAGGGACTAGGGCTCT	15	+	21158335-21158384	15p14	PREDICTED: Rattus norvegicus similar to REST corepressor 2 (predicted) (RGD1565031_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242284-S	ILMN_286547	SERPIND1	NM_024382.1	NM_024382.1		79224	13242284	NM_024382.1	Serpind1	NP_077358.1	ILMN_1352492	0004670056	S	1729	AGCTATTCCCTAGAGGTCCTAGACACAGACTGCCTCAGCGCCAACGCCTC	11	-	85667018-85667067	11q23	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade D, member 1 (Serpind1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	rls2var1	rls2var1
Rattus norvegicus	RefSeq	GI_25742818-S	ILMN_272494	PLD1	NM_030992.1	NM_030992.1		25096	25742818	NM_030992.1	Pld1	NP_112254.1	ILMN_1354969	0005290092	S	4890	TTGTAGACAATGTTCTCATAAGGCCATAAAGGGCTGGCACAGTTCCCTAG	2	+	115460239-115460288	2q24	Rattus norvegicus phospholipase D1 (Pld1), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex [goid 31985] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IMP]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate [goid 4630] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate [goid 4630] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	Pld1b; Pldb; Plda; Pld1a	Pld1b; Pldb; Plda; Pld1a
Rattus norvegicus	RefSeq	GI_47576164-S	ILMN_277351	OLR1368	NM_214825.1	NM_214825.1		287082	47576164	NM_214825.1	Olr1368	NP_999990.1	ILMN_1367832	0000730008	S	594	AATTCATACAGAGGGAGCTGTGGTCATGGTCACCCCATTTGTCTGCATCC	10	-	12357404-12357453	10q12	Rattus norvegicus olfactory receptor 1368 (Olr1368), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1368	Olr1368
Rattus norvegicus	RefSeq	GI_62651191-S	ILMN_267996	GSC	XM_001067894.1	XM_001067894.1		317715	109479908	XM_001067894.1	Gsc	XP_001067894.1	ILMN_1353173	0000070170	S	1026	GAGGGAAGAGGAAGGTAAAAGCGATTTGGACTCGGACAGCTGACGGCCGC				6q32	PREDICTED: Rattus norvegicus goosecoid (Gsc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the ear over time, from its formation to the mature structure. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 43583] [evidence ISS]; The process by which the anatomical structures of muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 48644] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661193-S	ILMN_273029	RGD1565108_PREDICTED	XM_573732.1	XM_573732.1		498475	62661193	XM_573732.1	RGD1565108_predicted	XP_573732.1	ILMN_1351502	0004560672	S	1358	GAAAGAGCATTTACTTTTCTTCCAGAGGACTGGAGTTTGATCCCAGCACC				15p14	PREDICTED: Rattus norvegicus similar to prostaglandin D2 receptor (predicted) (RGD1565108_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018317-S	ILMN_285141	NPHS1	NM_022628.1	NM_022628.1		64563	12018317	NM_022628.1	Nphs1	NP_072150.1	ILMN_1365687	0006420136	S	5604	GACGTCACAGAAGCAAGAACGTGATTGGCGGCTAGGACTTAGGGGCTGTG	1	+	85444035-85444084	1q21	Rattus norvegicus nephrosis 1 homolog, nephrin (human) (Nphs1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with spectrin, a protein that is the major constituent of the erythrocyte cytoskeletal network. It associates with band 4.1 (see band protein) and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. It is composed of nonhomologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers [goid 30507] [evidence IPI]; Interacting selectively with alpha-actinin, one of a family of proteins that cross-link F-actin as antiparallel homodimers. Alpha-actinin has a molecular mass of 93-103 KDa; at the N-terminus there are two calponin homology domains, at the C-terminus there are two EF-hands. These two domains are connected by the rod domain. This domain is formed by triple-helical spectrin repeats [goid 51393] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641124-S	ILMN_269652	RAB6IP1_PREDICTED	XM_219270.3	XM_219270.3		308942	62641124	XM_219270.3	Rab6ip1_predicted	XP_219270.3	ILMN_1351816	0005690735	S	4490	CGGGCCATGCACAGGTGTGCGAGTGGGAGATCCCATGCTCAAAGGGATTT	1	-	167520032-167520081	1q33	PREDICTED: Rattus norvegicus Rab6 interacting protein 1 (predicted) (Rab6ip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929081-S	ILMN_280902	PDXK	NM_031769.1	NM_031769.1		83578	13929081	NM_031769.1	Pdxk	NP_113957.1	ILMN_1361035	0001190053	S	288	TATCGTGCAGGAGCTGAAGCAACAGAACTCTCGACTCGTGTACGTGTGCG	20	+	10556285-10556328:10557858-10557863	20p12	Rattus norvegicus pyridoxal (pyridoxine, vitamin B6) kinase (Pdxk), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds [goid 8615] [evidence IEA]; The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6 [goid 42823] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate [goid 8478] [evidence ISS]; Catalysis of the reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate [goid 8478] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence ISS]; Interacting selectively with lithium ions (Li+) [goid 31403] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656857-S	ILMN_50548	LOC497982	XM_579764.1	XM_579764.1		497982	62656857	XM_579764.1	LOC497982	XP_579764.1	ILMN_1362910	0006350180	S	790	GGCCAGGGGTCAATGTTGGTTGTCTTTCTCACTTGCTTGTCACTGGGGAG					PREDICTED: Rattus norvegicus LOC497982 (LOC497982), mRNA.					
Rattus norvegicus	RefSeq	GI_62656787-S	ILMN_269447	WFIKKN2_PREDICTED	XM_001081284.1	XM_001081284.1		287631	109491675	XM_001081284.1	Wfikkn2_predicted	XP_001081284.1	ILMN_1368046	0002230601	S	1945	CCCCCTGGGCTTAGAAGAGAGCAGTCAGCTAAAAGAAACCCAGGAGCCTC				10q26	PREDICTED: Rattus norvegicus WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 (predicted) (Wfikkn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645938-S	ILMN_278779	RGD1306067	XM_001081317.1	XM_001081317.1		366203	109470895	XM_001081317.1	RGD1306067	XP_001081317.1	ILMN_1360262	0002030725	S	2493	CGACTCATTCAAGCAGTGGAGAGAGCACAGCAGGACACGGGAAAGCCAGC				3q41	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 6 (RGD1306067), mRNA.					
Rattus norvegicus	RefSeq	GI_13929099-S	ILMN_266398	APBA1	NM_031779.1	NM_031779.1		83589	13929099	NM_031779.1	Apba1	NP_113967.1	ILMN_1351230	0003140309	S	3741	GTCCTGGCAAGTCACAGGGCCTCCAAGGTTCCCCAGGTTTCCAAGGTTAC				1q51	Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, member 1 (Apba1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The regulated release of glutamate by a cell or group of cells. The glutamate is the most abundant excitatory neurotransmitter in the nervous system [goid 14047] [evidence ISS]; The regulated release of gamm-aminobutyric acid by a cell or group of cells. The gamma-aminobutyric acid is the principal inhibitory neurotransmitter in the brain but is also found in several extraneural tissues [goid 14051] [evidence ISS]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phosphatidylinositol-4,5-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 5546] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]	Mint1	Mint1
Rattus norvegicus	RefSeq	GI_62663024-S	ILMN_263697	LOC306312	XM_001065941.1	XM_001065941.1		306312	109503864	XM_001065941.1	LOC306312	XP_001065941.1	ILMN_1364495	0004540110	S	1885	CTCATGGCCAAGGCATTCAGGGACTACAGCCGTAGGTTCTACACAAAGTG					PREDICTED: Rattus norvegicus similar to RNA polymerase II transcription factor SIII subunit A2 (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) (LOC306312), mRNA.					
Rattus norvegicus	RefSeq	GI_62639161-S	ILMN_289050	ZNF574	NM_001024258.1	NM_001024258.1		308434	66730389	NM_001024258.1	Znf574	NP_001019429.1	ILMN_1364659	0000510706	S	2617	GCTACCGCTCCTTCTCCAATCTCTGGAAACACCGCAAGACTCACCAGCAG	1	+	80395150-80395199	1q21	Rattus norvegicus zinc finger protein 574 (Znf574), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Znf574	Znf574
Rattus norvegicus	RefSeq	GI_62651869-S	ILMN_63649	RGD1563124_PREDICTED	XM_576204.2	XM_576204.2		500817	109480388	XM_576204.2	RGD1563124_predicted	XP_576204.1	ILMN_1363673	0005910577	S	104	GCCGCGCCTCAGCCATGGCATTTAAAGATACCAGGAAGACTCCCGTGGAG	7	-	20085115-20085151:20085152-20085164	7q13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1563124_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27717838-S	ILMN_63649	RGD1563124_PREDICTED	XM_576204.2	XM_576204.2		500817	109480388	XM_576204.2	RGD1563124_predicted	XP_576204.1	ILMN_1363514	0007000095	S	243	TGCAAAGGAGAAGAATCTGAAAGAGAAAGGACCGGTGCGCATGCCTACCA	7	-	20084976-20085025	7q13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S20 (predicted) (RGD1563124_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660363-S	ILMN_65000	LOC501911	XM_577335.1	XM_577335.1		501911	62660363	XM_577335.1	LOC501911	XP_577335.1	ILMN_1366088	0004590433	S	472	TCCTCCTCGCAGAAGCAGCGCACCATCAGGAAGCAAGCCCTCATTGGAGT					PREDICTED: Rattus norvegicus similar to histone H3 (LOC501911), mRNA.					
Rattus norvegicus	RefSeq	GI_62658308-S	ILMN_273807	LRRC8E	NM_001034139.1	NM_001034139.1		304203	77627868	NM_001034139.1	Lrrc8e	NP_001029311.1	ILMN_1349609	0002940176	S	1989	CCAGATAGCCTATGTGCCTGAGCATGTGAGGAAGCTCCGAAGCCTGGAGC	12	-	1555422-1555471	12p12	Rattus norvegicus leucine rich repeat containing 8 family, member E (Lrrc8e), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1311979; MGC124693	RGD1311979; MGC124693
Rattus norvegicus	RefSeq	GI_62647363-S	ILMN_63456	LOC500155	XM_575507.1	XM_575507.1		500155	62647363	XM_575507.1	LOC500155	XP_575507.1	ILMN_1350172	0000110441	S	72	CATCCGCAAAGAAATCCCGGCCAAGATCATTTTCAAGGACGATCGGTGTC					PREDICTED: Rattus norvegicus similar to protein kinase C inhibitor (LOC500155), mRNA.					
Rattus norvegicus	RefSeq	GI_62663238	ILMN_273522	RGD1305727_PREDICTED	XM_001067951.1	XM_001067951.1		306768	109505430	XM_001067951.1	RGD1305727_predicted	XP_001067951.1	ILMN_1650091	0006900008	S	672	CCACCCCCCGGCTGTAAGGCAAGGGATGTATAGTTTCAGATGATGCTGGG				17p14	PREDICTED: Rattus norvegicus similar to Protein CGI-117 (Protein HSPC111) (predicted) (RGD1305727_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645339-S	ILMN_53994	ITGAV_PREDICTED	XM_230950.4	XM_230950.4		296456	109468377	XM_230950.4	Itgav_predicted	XP_230950.4	ILMN_1366092	0002190433	S	3265	TACTGTGTGGGGCTTCTCTCTGCGGTGTTACGTTAGGGCAGGTAGGATTG	3	+	67029630-67029679	3q24	PREDICTED: Rattus norvegicus integrin alpha V (predicted) (Itgav_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645293-S	ILMN_51717	LOC497777	XM_579692.1	XM_579692.1		497777	62645293	XM_579692.1	LOC497777	XP_579692.1	ILMN_1353183	0001850195	S	5065	ATGGAACCCAAAGTTGAAACATGCCAGGATGCCCCTTTTCTACCCAGGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_172066 (LOC497777), mRNA.					
Rattus norvegicus	RefSeq	GI_62661520-S	ILMN_267294	CTSG_PREDICTED	XM_001058499.1	XM_001058499.1		290257	109502460	XM_001058499.1	Ctsg_predicted	XP_001058499.1	ILMN_1366744	0004850053	S	480	CCAGGAGGTGAAGCTAAGAGTGCAGACGGACCAAACGTGCGCCAATCGTT				15p12	PREDICTED: Rattus norvegicus cathepsin G (predicted) (Ctsg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758343-S	ILMN_262914	SEC16B	NM_053571.1	NM_053571.1		89868	16758343	NM_053571.1	Sec16b	NP_446023.1	ILMN_1355207	0000630010	S	4066	GGAGGGATGGGCGCTTCATATTGCTAATACCTGCCTTCCTACCTCAGGCC	13	+	72830618-72830667	13q22	Rattus norvegicus SEC16 homolog B (S. cerevisiae) (Sec16b), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]		Rgpr	Rgpr
Rattus norvegicus	RefSeq	GI_62638373-S	ILMN_69050	RGD1560609_PREDICTED	XM_574282.2	XM_574282.2		498992	109457639	XM_574282.2	RGD1560609_predicted	XP_574282.2	ILMN_1351302	0004760427	S	1510	CTGAGGAGCCGAGGTGGAGCCCCTTTGCCTGTCTTAGTGATGGCACTGTA	1	-	22121937-22121986	1p12	PREDICTED: Rattus norvegicus similar to Vanin-3 (predicted) (RGD1560609_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641140-S	ILMN_48771	MRVI1_PREDICTED	XM_218999.4	XM_218999.4		308899	109459229	XM_218999.4	Mrvi1_predicted	XP_218999.4	ILMN_1361633	0004120142	S	2562	GATCTGGATGATGGCCGCTGTGATGCTGGTCTTGAGTGTTGTGCTTGGGC	1	-	168630572-168630621	1q33	PREDICTED: Rattus norvegicus MRV integration site 1 homolog (mouse) (predicted) (Mrvi1_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.22444	ILMN_161529	RN.22444	Rn.22444		Rn.22444		14924608	BI278097			ILMN_1530158	0005860458	S	239	AATAATACGAGCAGTAGCATATCGGTAGTTTCTGTTCAGCCTATCTATAA					UI-R-CZ0-byd-c-06-0-UI.s1 UI-R-CZ0 Rattus norvegicus cDNA clone UI-R-CZ0-byd-c-06-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62659643-S	ILMN_60828	GPA33_PREDICTED	XM_341149.3	XM_341149.3		360873	109498137	XM_341149.3	Gpa33_predicted	XP_341150.3	ILMN_1352649	0004590603	S	997	TCCAGAGAGTGGGAAGATGAGGATGACCGCAGGCATGAGGACCAGAGGAG	13	+	81892493-81892542	13q23	PREDICTED: Rattus norvegicus glycoprotein A33 (transmembrane) (predicted) (Gpa33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648376	ILMN_65684	LOC502883	XM_578384.1	XM_578384.1		502883	62648376	XM_578384.1	LOC502883	XP_578384.1	ILMN_1650588	0002690088	S	978	TCGGGACCTTGGTTTTTGTCAGATTGCAGCCCCTTCCCCAGTCAACGCTG					PREDICTED: Rattus norvegicus similar to CGI-107 protein (LOC502883), mRNA.					
Rattus norvegicus	RefSeq	GI_40254744-S	ILMN_300346	RPS27	NM_053597.2	NM_053597.2		94266	40254744	NM_053597.2	Rps27	NP_446049.1	ILMN_1351833	0005290670	S	271	CTTCAGGAGGAAGCAGCACTGAAAGCCCCTGATTCAAGATGAGTGGGAAC	2	-	182451551-182451583:182451584-182451600	2q34	Rattus norvegicus ribosomal protein S27 (Rps27), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IDA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664554-S	ILMN_278548	RGD1564795_PREDICTED	XR_008277.1	XR_008277.1		291544	109507488	XR_008277.1	RGD1564795_predicted		ILMN_1374863	0005570025	S	1273	TGTGCCTCTGACGTCACCGGAGAGCTGGGGCGCTTCCAAGATAATCGCTA				18q12.1	PREDICTED: Rattus norvegicus similar to suppression of tumorigenicity 13 (predicted) (RGD1564795_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955147-S	ILMN_295723	CYP3A18	NM_145782.1	NM_145782.1		252931	21955147	NM_145782.1	Cyp3a18	NP_665725.1	ILMN_1368383	0001740377	S	1692	CTGAGTATTCAGAAATTCACTGAACAGGCTCAGTGGCTCTGCGGTGTATC	12	-	9086995-9087044	12p11	Rattus norvegicus cytochrome P450, 3a18 (Cyp3a18), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: testosterone + donor-H2 + O2 = 6-alpha-hydroxytestosterone + H2O [goid 8390] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Catalysis of the reaction: testosterone + donor-H2 + O2 = 6-beta-hydroxytestosterone + H2O [goid 50649] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62643131-S	ILMN_55631	LOC361912	XM_342207.2	XM_342207.2		361912	62643131	XM_342207.2	LOC361912	XP_342208.2	ILMN_1362918	0001240546	S	613	GGCAAAGATTAAAACAGACACAGAGGGAACACCCATTCAGAGCCTGCCCC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC361912), mRNA.					
Rattus norvegicus	RefSeq	GI_62647584-S	ILMN_50525	LOC502831	XM_578331.1	XM_578331.1		502831	62647584	XM_578331.1	LOC502831	XP_578331.1	ILMN_1372807	0000520286	S	23	CAGTCAGGTCTTCGTATTTCTGCTGCTCTGGTTGTCTGGGGTTTATGGGA				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain variable region (LOC502831), mRNA.					
Rattus norvegicus	RefSeq	GI_34877103-S	ILMN_60556	LOC306223	XM_224631.2	XM_224631.2		306223	34877103	XM_224631.2	LOC306223	XP_224631.2	ILMN_1351191	0003390168	S	450	GAGGTCCTGGACCCCAGCAATGCAGAATTTGCTGCTGAGCGAGACTGGGA				16p16	PREDICTED: Rattus norvegicus similar to RS21-C6 protein (LOC306223), mRNA.					
Rattus norvegicus	RefSeq	GI_62718732-S	ILMN_56849	LOC501459	XM_576869.1	XM_576869.1		501459	62718732	XM_576869.1	LOC501459	XP_576869.1	ILMN_1357117	0005390184	S	94	GGGCCCTCCACTCAGCACCAGCGCGCTTTATATCCATTCGTGAAGCCAAA					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501459), mRNA.					
Rattus norvegicus	RefSeq	GI_62662371-S	ILMN_283881	EPS15L1	NM_001029921.1	NM_001029921.1		361120	71361632	NM_001029921.1	Eps15l1	NP_001025092.1	ILMN_1370498	0006130706	S	2381	GCGGCGACCCGTTCCAAAATAAAAAGGGGTTTGGGGACCCATTTAGTGGC	16	+	17917141-17917190	16p14	Rattus norvegicus epidermal growth factor receptor pathway substrate 15-like 1 (Eps15l1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116150	MGC116150
Rattus norvegicus	RefSeq	GI_62652262-S	ILMN_60532	LOC500848	XM_580128.1	XM_580128.1		500848	62652262	XM_580128.1	LOC500848	XP_580128.1	ILMN_1371974	0004010471	S	296	CTTGGTGAGGGTGTGTGTCCACCTGACTGCGGCCCTCAGAACCCCCAAAT					PREDICTED: Rattus norvegicus LOC500848 (LOC500848), mRNA.					
Rattus norvegicus	RefSeq	GI_62718506-S	ILMN_291306	LOC501406	XM_001063978.1	XM_001063978.1		501406	109460682	XM_001063978.1	LOC501406	XP_001063978.1	ILMN_1366885	0003190132	S	1514	GACTCCATACTGGTGAGAAGCCCTACAAATGTGAACAATGTGGGAAAGCC					PREDICTED: Rattus norvegicus similar to zinc finger protein 85, related sequence 1 (LOC501406), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653317-S	ILMN_271891	SLC44A2_PREDICTED	XM_001077428.1	XM_001077428.1		363024	109484365	XM_001077428.1	Slc44a2_predicted	XP_001077428.1	ILMN_1362775	0003360044	S	2131	CATGTCGCCCGAGCTGAAAGACATCCTATTGAAGGGGAGTTCGCAGGCGG				8q13	PREDICTED: Rattus norvegicus solute carrier family 44, member 2 (predicted) (Slc44a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651833-S	ILMN_61973	RGD1564330_PREDICTED	XM_343179.3	XM_343179.3		362848	109480340	XM_343179.3	RGD1564330_predicted	XP_343180.3	ILMN_1367672	0000540458	S	2016	CAAGGATGAGATGCTCTGCCGGGACCCCAAGGGCAAGTATGGCTATGTGC	7	+	16148928-16148965:16149050-16149061	7q12	PREDICTED: Rattus norvegicus similar to PML-RAR alpha-regulated adaptor molecule-1 (predicted) (RGD1564330_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560076-S	ILMN_267828	BSPRY	NM_022261.1	NM_022261.1		64027	11560076	NM_022261.1	Bspry	NP_071597.1	ILMN_1366975	0006660400	S	704	TCTGTTTCTCACACAACGGGAACCATGAACCTCTGGCGCTCCTCCGGTGC	5	+	79492233-79492282	5q24	Rattus norvegicus B-box and SPRY domain containing (Bspry), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577034-S	ILMN_291699	OLR778	NM_001000607.1	NM_001000607.1		404796	47577034	NM_001000607.1	Olr778	NP_001000607.1	ILMN_1357972	0000380538	S	660	TCTCCTCAACACTGTCCAGAAGCAGTCCTCAGGATGTTCATCTAAGGCCC	3	-	97493212-97493261	3q34	Rattus norvegicus olfactory receptor 778 (Olr778), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr778	Olr778
Rattus norvegicus	RefSeq	GI_16758079-S	ILMN_271132	COL1A2	NM_053356.1	NM_053356.1		84352	16758079	NM_053356.1	Col1a2	NP_445808.1	ILMN_1354712	0003840156	S	4054	CCTCTGGACATCGGTGGTACTAACCAAGAATTCCGTGTGGAGGTTGGCCC	4	+	29428161-29428210	4q13	Rattus norvegicus collagen, type I, alpha 2 (Col1a2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen heterotrimer containing two alpha1(I) chains and one alpha2(I) chain; type I collagen triple helices associate to form banded fibrils [goid 5584] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34868550	ILMN_274097	CDC26	NM_001013240.1	NM_001013240.1		366381	61557400	NM_001013240.1	Cdc26	NP_001013258.1	ILMN_1650793	0000610441	S	231	GCAGCTCACCGGGTCTGACTTCATTATGCTGCGACGAAAGCCAACTCGCC	5	-	79399360-79399385:79399386-79399409	5q24	Rattus norvegicus cell division cycle 26 (Cdc26), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B [goid 5680] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]		BWK-2	BWK-2
Rattus norvegicus	RefSeq	GI_11177881-S	ILMN_283196	GLP2R	NM_021848.1	NM_021848.1		60432	11177881	NM_021848.1	Glp2r	NP_068620.1	ILMN_1352061	0002690154	S	1275	CTCTGTCCACGGATTTCTGGTGGCCTTGCAGTATGGCTTTGCCAATGGAG	10	-	54425864-54425904:54434316-54434324	10q24	Rattus norvegicus glucagon-like peptide 2 receptor (Glp2r), mRNA.		The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; Any biological process involved in the maintenance of an internal equilibrium [goid 42592] [evidence TAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_19705548-S	ILMN_268182	EXOC2	NM_134414.1	NM_134414.1		171455	19705548	NM_134414.1	Exoc2	NP_599241.1	ILMN_1356718	0004610039	S	3805	GGTCACTGCGACCTGCAAGCAGCTTTTACCTCACTGCATCTGACCCTAGC	17	+	40124889-40124938	17p12	Rattus norvegicus exocyst complex component 2 (Exoc2), mRNA.	A protein complex peripherally associated with the plasma membrane that determines where secretory vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals [goid 145] [evidence IDA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases [goid 17160] [evidence ISS]; Interacting selectively with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases [goid 17160] [evidence IEA]	Sec5l1; Rsec5	Sec5l1; Rsec5
Rattus norvegicus	RefSeq	GI_62652043-S	ILMN_49443	CRADD_PREDICTED	XM_235061.4	XM_235061.4		314756	109480489	XM_235061.4	Cradd_predicted	XP_235061.2	ILMN_1358926	0006900131	S	355	GTAAGAGAGAAGCTGGAGAAGGCAAGAGAGGAAGCCACGGCTGAGCTGCC	7	-	32516072-32516121	7q13	PREDICTED: Rattus norvegicus CASP2 and RIPK1 domain containing adaptor with death domain (predicted) (Cradd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665270-S	ILMN_63500	ZFP612_PREDICTED	XM_226455.4	XM_226455.4		307839	109508105	XM_226455.4	Zfp612_predicted	XP_226455.4	ILMN_1352419	0001850021	S	2126	CCTTTCCGATGCATGGAGTGTGGCAAGGGCTTCAGCCTTAGTTCTGATTG	19	+	39972296-39972345	19q12	PREDICTED: Rattus norvegicus zinc finger protein 612 (predicted) (Zfp612_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650713-S	ILMN_269805	PAX9	NM_001039539.1	NM_001039539.1		362741	88014533	NM_001039539.1	Pax9	NP_001034628.1	ILMN_1352871	0002350184	S	2114	CATGTCAAGCACAGGACAAGAGGCTCTAACATACCTGTACCACAACGCTC	6	+	77122701-77122750	6q23	Rattus norvegicus paired box gene 9 (Pax9), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Pax9	Pax9
Rattus norvegicus	RefSeq	GI_62667577-S	ILMN_69901	LOC503483	XM_580272.1	XM_580272.1		503483	62667577	XM_580272.1	LOC503483	XP_580272.1	ILMN_1370425	0001240609	S	284	CGGAATCCAGCTAGTAAGCCACGGAAAGCAGCTGGTCAGCCAAGGAACAC					PREDICTED: Rattus norvegicus LOC503483 (LOC503483), mRNA.					
Rattus norvegicus	RefSeq	GI_62666838-S	ILMN_51772	LOC302692	XM_241848.3	XM_241848.3		302692	62666838	XM_241848.3	LOC302692	XP_241848.3	ILMN_1354263	0000430164	S	461	GACTGCAAACAAGGCCCGGCTCAACAGTCAAGGTTTTGGGTGTGCTTGGC					PREDICTED: Rattus norvegicus similar to X-linked juvenile retinoschisis protein (LOC302692), mRNA.					
Rattus norvegicus	RefSeq	GI_52138606-S	ILMN_273200	PRKCH	NM_031085.2	NM_031085.2		81749	52138606	NM_031085.2	Prkch	NP_112347.1	ILMN_1361322	0006100239	S	3180	CACGTGTGTGGCAGGTCCATCGGCCGCCTACTTGAGTTATGTTTCAGAGA	6	+	96281593-96281642	6q24	Rattus norvegicus protein kinase C, eta (Prkch), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93383	MGC93383
Rattus norvegicus	RefSeq	GI_62666920	ILMN_56165	LOC298795	XM_233856.3	XM_233856.3		298795	62666920	XM_233856.3	LOC298795	XP_233856.3	ILMN_1650225	0003800324	S	383	GCTTCTGGCTACAGCCCTCCAACTGTGGTTTCTGTGTCTACATAGCCTCC				6q13	PREDICTED: Rattus norvegicus similar to 14-3-3 protein sigma (LOC298795), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of CDK activity [goid 79] [evidence IEA]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; A cascade of processes initiated by the detection of DNA damage and resulting in the induction of apoptosis (programmed cell death) [goid 8630] [evidence IEA]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IEA]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEA]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652277-S	ILMN_270964	LRP1	XM_001056970.1	XM_001056970.1		299858	109482077	XM_001056970.1	Lrp1	XP_001056970.1	ILMN_1357522	0005570450	S	14411	TTAGTTGAGGGAAGTCACCCCAAGCCCCAGCTCCCACTTTTAGGGGCACG				7q22	PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 1 (Lrp1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IMP]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEP]; The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte [goid 43277] [evidence IEA]; The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte [goid 43277] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62664871-S	ILMN_267455	RGD1559772_PREDICTED	XR_008100.1	XR_008100.1		364946	109508436	XR_008100.1	RGD1559772_predicted		ILMN_1352567	0002370333	S	828	CAAGAGCCCCAAATCGCAGGTCACACTCCTGGAATCTACAAGAGAGGCGG				19p11	PREDICTED: Rattus norvegicus similar to Luc7 homolog (S. cerevisiae)-like (predicted) (RGD1559772_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642702-S	ILMN_57013	LOC294622	XM_226650.2	XM_226650.2		294622	62642702	XM_226650.2	LOC294622	XP_226650.1	ILMN_1352619	0003190487	S	1139	TTCTCCACCTGCCAGCAGTTTGCTGCTATGGACAGAAATCCCAAACCCTG				2q11	PREDICTED: Rattus norvegicus similar to retinoblastoma-binding protein 1 isoform I (LOC294622), mRNA.					
Rattus norvegicus	RefSeq	GI_62718794-S	ILMN_62764	LOC501478	XM_576886.1	XM_576886.1		501478	62718794	XM_576886.1	LOC501478	XP_576886.1	ILMN_1350757	0003440735	S	184	TAACACCATCAGTGGTCATGGAGGGTCCACCTTTTCTGAGTTTAGACAGG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501478), mRNA.					
Rattus norvegicus	RefSeq	GI_62642069-S	ILMN_49583	LOC293963	XM_219896.2	XM_219896.2		293963	62642069	XM_219896.2	LOC293963	XP_219896.2	ILMN_1357250	0007100279	S	819	ACATCTCAAGCCCTACTCATGGCCACACTGGAACCTTGCTCTCAAGCCCG				1q51	PREDICTED: Rattus norvegicus similar to Fatty acid-binding protein, epidermal (E-FABP) (Cutaneous fatty acid-binding protein) (C-FABP) (DA11) (LOC293963), mRNA.					
Rattus norvegicus	RefSeq	GI_62647418-S	ILMN_65930	LOC500177	XM_575529.1	XM_575529.1		500177	62647418	XM_575529.1	LOC500177	XP_575529.1	ILMN_1364318	0003140333	S	238	CTACATCCACTTTAGAATCTGGTGTCCCATCAAGGTTCAGTGGCAGTGGG				4q31	PREDICTED: Rattus norvegicus similar to Ig kappa light chain precursor (LOC500177), mRNA.					
Rattus norvegicus	RefSeq	GI_62664272	ILMN_300947	PCDHGB8	NM_001037159.1	NM_001037159.1		364845	81158092	NM_001037159.1	Pcdhgb8	NP_001032236.1	ILMN_1651122	0003120114	S	1653	GCGACCTTGAACCTAAATCACTGTGGTCCTATGTGTCTGTGAACCGGGAC	18	+	30671130-30671179	18p11	Rattus norvegicus protocadherin gamma subfamily B, 8 (Pcdhgb8), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	PCDHGB8	PCDHGB8
Rattus norvegicus	RefSeq	GI_62646679	ILMN_274414	RGD1305915	XM_001060650.1	XM_001060650.1		296758	109472933	XM_001060650.1	RGD1305915	XP_001060650.1	ILMN_1649728	0002350050	S	1659	TGGGCGCGGGACTGGGACGTGGGTACGTGGATTCCTTTGTGTGCCTATTT				4q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810037C14, transcript variant 2 (RGD1305915), mRNA.					
Rattus norvegicus	RefSeq	GI_62653969-S	ILMN_56584	LOC503207	XM_578732.1	XM_578732.1		503207	62653969	XM_578732.1	LOC503207	XP_578732.1	ILMN_1373460	0007000458	S	1204	CGGATGGTCAGCTGTGGAAACGGAAAGGCACCAGAGAACAGCAGCGAACA					PREDICTED: Rattus norvegicus similar to F-box and leucine-rich repeat protein 14 (LOC503207), mRNA.					
Rattus norvegicus	RefSeq	GI_56961655-S	ILMN_294633	ZMYND19	NM_198770.2	NM_198770.2		311791	56961655	NM_198770.2	Zmynd19	NP_942065.1	ILMN_1364662	0006180242	S	864	CGATGACGGGCTGAAGAGCTGCCACTGCTGCGGGTTCACAGTTTCCAGCT	3	+	5106113-5106116:5106117-5106162	3p13	Rattus norvegicus zinc finger, MYND-type containing 19 (Zmynd19), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108530; mizip	MGC108530; mizip
Rattus norvegicus	RefSeq	GI_47577016-S	ILMN_302727	OLR282	NM_001000224.1	NM_001000224.1		293424	47577016	NM_001000224.1	Olr282	NP_001000224.1	ILMN_1364968	0001990021	S	482	GGGTATCAGGGATCATGGTAGCTACTGTGCAGACCACATGGGTGTTTAGC	1	+	166485220-166485269	1q33	Rattus norvegicus olfactory receptor 282 (Olr282), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-166595402-166596382_ORF; Olr282	ratchr1-166595402-166596382_ORF; Olr282
Rattus norvegicus	RefSeq	GI_62645254-S	ILMN_49590	EVX2_PREDICTED	XM_221512.3	XM_221512.3		288155	62645254	XM_221512.3	Evx2_predicted	XP_221512.3	ILMN_1349968	0002450725	S	2085	CCGGGGCACGGGAGGGCGAAAGAAAACTGCCCGAGTTGGGGACTGGGGGA				3q23	PREDICTED: Rattus norvegicus even skipped homeotic gene 2 (predicted) (Evx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649542-S	ILMN_299083	ERMAP_PREDICTED	XM_001073566.1	XM_001073566.1		298485	109477118	XM_001073566.1	Ermap_predicted	XP_001073566.1	ILMN_1356786	0005670162	S	1786	CTCTCCCCTCAGGGTTCTGAGTTTTTTCCACTTAACGATGCCTGGCCCTC				5q36	PREDICTED: Rattus norvegicus erythroblast membrane-associated protein (predicted) (Ermap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661167-S	ILMN_268395	LOC498470	XM_001062043.1	XM_001062043.1		498470	109514866	XM_001062043.1	LOC498470	XP_001062043.1	ILMN_1362665	0003120068	S	1356	GAATAAATTAATGTTTGTCTATAAATAAAAATGTGACCTTTAACCCTTCA				15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498470), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661183	ILMN_268395	LOC498470	XM_001062043.1	XM_001062043.1		498470	109514866	XM_001062043.1	LOC498470	XP_001062043.1	ILMN_1650186	0005570168	S	914	CTCCTCCCGCATCTCAGTCCTTGTAACCGTTCCAATCTTGGGCTGATTTG				15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498470), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718584-S	ILMN_268395	LOC498470	XM_001062043.1	XM_001062043.1		498470	109514866	XM_001062043.1	LOC498470	XP_001062043.1	ILMN_2040927	0005820653	S	549	GGACCCTAGAAGGAGGAATGGACTTGGAGAAGTGGGAGGAAGTTGGAGAC				15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498470), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114269-S	ILMN_273864	V1RF6	NM_001008954.1	NM_001008954.1		494298	57114269	NM_001008954.1	V1rf6	NP_001008954.1	ILMN_1370268	0000070041	S	621	GCACAGGCACCAGCATCAGGTACAGCATATACACGCAACCCATGTCTCCC	1	+	58784190-58784239	1q12	Rattus norvegicus vomeronasal 1 receptor, F6 (V1rf6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	V1rf7	V1rf7
Rattus norvegicus	RefSeq	GI_62641009-S	ILMN_299208	POLD3	NM_001024750.1	NM_001024750.1		293144	67078515	NM_001024750.1	Pold3	NP_001019921.1	ILMN_1352290	0002350025	S	1366	TGCTGCCACTGTGAAACGGGAGCCCAGAGAAGAACGGAAGGGTCCCAAGA	1	-	157453355-157453404	1q32	Rattus norvegicus polymerase (DNA-directed), delta 3, accessory subunit (Pold3), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_16758553-S	ILMN_274495	PI4K2A	NM_053735.1	NM_053735.1		114554	16758553	NM_053735.1	Pi4k2a	NP_446187.1	ILMN_1353104	0006900022	S	1563	CCAGGAAGCCAGAGAAGTTGGTGCACAGCAGAGCCTTTCAGAGCCCTTCC				1q54	Rattus norvegicus phosphatidylinositol 4-kinase type 2 alpha (Pi4k2a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence IEA]	Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Pi4KII	Pi4KII
Rattus norvegicus	RefSeq	GI_12408305-S	ILMN_289903	CSNK1G3	NM_022855.1	NM_022855.1		64823	12408305	NM_022855.1	Csnk1g3	NP_074046.1	ILMN_1365125	0002810537	S	2090	ACCATACAACGTCACAAGTGACTGGACACAGACAGAGCCTGGGGAGTTAC				18q11	Rattus norvegicus casein kinase 1, gamma 3 (Csnk1g3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_27665565-S	ILMN_288966	SUMO2	NM_133594.1	NM_133594.1		171127	19424297	NM_133594.1	Sumo2	NP_598278.1	ILMN_2040836	0002690195	S	611	TGGCCGATGTTCTGTTTTGGTTACATCAGATGGAGACAGTCTGGGGACAG	5	+	15326061-15326110	5q12	Rattus norvegicus SMT3 suppressor of mif two 3 homolog 2 (yeast) (Sumo2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]	Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	Smt3h2	Smt3h2
Rattus norvegicus	RefSeq	GI_62643648-S	ILMN_268589	RGD1560324_PREDICTED	XM_001062025.1	XM_001062025.1		295072	109466708	XM_001062025.1	RGD1560324_predicted	XP_001062025.1	ILMN_1369242	0004920731	S	1090	GACCACATAGAGGATGGAATCCATGGAGCCGTATCATTCGCCACAGCGCC				2q31	PREDICTED: Rattus norvegicus similar to hypothetical protein C130079G13 (predicted) (RGD1560324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665254-S	ILMN_62625	DHX38_PREDICTED	XM_238048.4	XM_238048.4		292007	109508096	XM_238048.4	Dhx38_predicted	XP_238048.4	ILMN_1349728	0001240593	S	3882	ATCTACACTCCAGGACGGAAAGAACAGGGGGAACCCATGACACCTCGCCG	19	-	39416693-39416742	19q12	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 38 (predicted) (Dhx38_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663572-S	ILMN_293723	CMAH	NM_001024273.1	NM_001024273.1		361245	66730363	NM_001024273.1	Cmah	NP_001019444.1	ILMN_1354723	0001980577	S	1776	CTGGAAGTTGTTCCTAATGCGCTGTGGTTAGGCTGGACCTGGACATCCCG				17p11	Rattus norvegicus cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) pseudogene (Cmah), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways involving CMP-N-acetylneuraminate, a substance composed of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid in glycosidic linkage with cytidine monophosphate [goid 46381] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: CMP-N-acetylneuraminate + NADPH + H+ + O2 = CMP-N-glycoloylneuraminate + NADP+ + H2O [goid 30338] [evidence ISS]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577202-S	ILMN_300517	OLR360	NM_001000755.1	NM_001000755.1		405026	47577202	NM_001000755.1	Olr360	NP_001000755.1	ILMN_1368322	0003120450	S	741	TGGGACAATCATATTTATGTACTTGCAGCCCAGCTCCAGGCACTCCATGG	1	-	216365299-216365348	1q43	Rattus norvegicus olfactory receptor 360 (Olr360), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr360	Olr360
Rattus norvegicus	RefSeq	GI_62649702-S	ILMN_272189	IBRDC3_PREDICTED	XM_001060328.1	XM_001060328.1		313806	109477286	XM_001060328.1	Ibrdc3_predicted	XP_001060328.1	ILMN_1360589	0004610672	S	1590	GCCAGAAGAGTATGAAGTGGAGTGAAGGCCCCTGCTCTGAGAAGCACACT				5q36	PREDICTED: Rattus norvegicus IBR domain containing 3 (predicted) (Ibrdc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666054-S	ILMN_287372	RGD1565964_PREDICTED	XM_577898.1	XM_577898.1		502419	62666054	XM_577898.1	RGD1565964_predicted	XP_577898.1	ILMN_1368582	0000580021	S	121	TTCTCCCTCGGGAACACCCGGATCGAGCTGCAGATCTACTACACTGGATG	20	+	21615412-21615461	20p11	PREDICTED: Rattus norvegicus similar to SAP18 (predicted) (RGD1565964_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718000-S	ILMN_60153	LOC501275	XM_576690.1	XM_576690.1		501275	62718000	XM_576690.1	LOC501275	XP_576690.1	ILMN_1349623	0002030373	S	2001	CACTTGGAAGAAGTGCTGGGTGGGGAGGGTTTTCTGACCCGGTGTGGGGA					PREDICTED: Rattus norvegicus similar to GRINL1A downstream protein Gdown4 (LOC501275), mRNA.					
Rattus norvegicus	RefSeq	GI_62653364-S	ILMN_281984	HERPUD2	NM_001024988.1	NM_001024988.1		300463	68163418	NM_001024988.1	Herpud2	NP_001020159.1	ILMN_1351451	0001990041	S	1517	GAGGGGCCTCCCCAAGTTGCCAATTAGACCTGAAAAACTGTGCCAGCTGC	8	-	24777712-24777761	8q13	Rattus norvegicus HERPUD family member 2 (Herpud2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62653366	ILMN_281984	HERPUD2	NM_001024988.1	NM_001024988.1		300463	68163418	NM_001024988.1	Herpud2	NP_001020159.1	ILMN_1650292	0003610735	S	618	CTCCAAAATCCAGCACCGATGGAGAAAGTCACGGAGCACTGGCATCCAGC	8	-	24802189-24802238	8q13	Rattus norvegicus HERPUD family member 2 (Herpud2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62641540-S	ILMN_293233	PTPRE	XM_001056164.1	XM_001056164.1		114767	109463070	XM_001056164.1	Ptpre	XP_001056164.1	ILMN_1362978	0002190746	S	2051	CAATCAGCATACGAGACTTTCTGGTTACTTTCAAACAGCCCCTGGCCCGC				1q41	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, E (Ptpre), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine phosphatase binding to its physiological ligand [goid 7185] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine phosphatase binding to its physiological ligand [goid 7185] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence NAS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656089-S	ILMN_47841	TNIP1_PREDICTED	XM_343894.3	XM_343894.3		363599	109488077	XM_343894.3	Tnip1_predicted	XP_343895.2	ILMN_1357549	0000770300	S	2671	CAGGTCTGCTAAAGGGCCCCAGACTGAAGATGACCTCAGCCCCCACAGTT	10	-	40319830-40319879	10q22	PREDICTED: Rattus norvegicus TNFAIP3 interacting protein 1 (predicted) (Tnip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19924038-S	ILMN_277984	CYP2C22	NM_138512.1	NM_138512.1		171518	19924038	NM_138512.1	Cyp2c22	NP_612521.1	ILMN_1373045	0006650735	S	1582	CTGGCAGTCCTTCCTGAATGGCAGGGATGCTACCTCTGAACTGTCCTACA	1	-	245298439-245298488	1q53	Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 22 (Cyp2c22), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence NAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	Cyp2c22; Cyp2c70	Cyp2c22; Cyp2c70
Rattus norvegicus	RefSeq	GI_62661346-S	ILMN_264709	RAB2B	NM_001037645.1	NM_001037645.1		305853	83415089	NM_001037645.1	Rab2b	NP_001032734.1	ILMN_1351877	0002030450	S	628	GTCCACAATGAGGCAAACGGCATCAAGATTGGGCCCCAGCAGTCGATCTC	15	-	27709440-27709478:27710582-27710592	15p14	Rattus norvegicus RAB2B, member RAS oncogene family (Rab2b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]	MGC125131	MGC125131
Rattus norvegicus	RefSeq	GI_57164036-S	ILMN_280498	V1RC44	NM_001009530.1	NM_001009530.1		494250	57164036	NM_001009530.1	V1rc44	NP_001009530.1	ILMN_1370586	0005340333	S	641	GCATCAACCACTTGAGAGTGTCCCCTGAGAAAAGAGCCACGCAGACCATC	4	+	86916169-86916218	4q24	Rattus norvegicus vomeronasal 1 receptor, C44 (V1rc44), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666631-S	ILMN_64133	LOC503431	XM_578972.1	XM_578972.1		503431	62666631	XM_578972.1	LOC503431	XP_578972.1	ILMN_1355852	0002760072	S	18	CCAGAAGGTGCCTCTGTGGGTGGTAGAACTGACCTCTCAGGGTGTCATAT					PREDICTED: Rattus norvegicus similar to ribosomal protein L10 (LOC503431), mRNA.					
Rattus norvegicus	RefSeq	GI_62648908-S	ILMN_277647	RGD1565236_PREDICTED	XM_001070941.1	XM_001070941.1		500453	109476418	XM_001070941.1	RGD1565236_predicted	XP_001070941.1	ILMN_1372098	0006770575	S	1092	CTACAATGATTCATGGAGGTTCCCCAACCCAGGGCTGCTCGGCTCCCCAT				5q22	PREDICTED: Rattus norvegicus similar to transcription factor (predicted) (RGD1565236_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650986-S	ILMN_64536	LOC503047	XM_578570.1	XM_578570.1		503047	62650986	XM_578570.1	LOC503047	XP_578570.1	ILMN_1366474	0001660088	S	559	TTGACTGTAGGCCCCGAACCTGGTCTTACTTGCGGCTGCGCGCCCTGATG					PREDICTED: Rattus norvegicus similar to Enhancer of rudimentary homolog (LOC503047), mRNA.					
Rattus norvegicus	RefSeq	GI_51948447-S	ILMN_295451	RAB21	NM_001004238.1	NM_001004238.1		299799	51948447	NM_001004238.1	Rab21	NP_001004238.1	ILMN_1358079	0006900315	S	1329	GCAGATACGTGAAGTTCTATTTTTGCAGGGTTTGCACAGGCCCCTAACTG	7	-	54550358-54550407	7q22	Rattus norvegicus RAB21, member RAS oncogene family (Rab21), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC94502	MGC94502
Rattus norvegicus	RefSeq	GI_13929113-S	ILMN_280841	HIPK3	NM_031787.1	NM_031787.1		83617	13929113	NM_031787.1	Hipk3	NP_113975.1	ILMN_1369988	0000540025	S	3797	GGCCCACCTCCTAGCCTCTCCGTGTACCTCAAGACCTATGTTACAGCATC	3	-	89750222-89750271	3q32	Rattus norvegicus homeodomain interacting protein kinase 3 (Hipk3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence IEA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IEA]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence IEA]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of JUN kinase activity [goid 43508] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of JUN kinase activity [goid 43508] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	ANPK	ANPK
Rattus norvegicus	RefSeq	GI_62650513-S	ILMN_63546	LOC298910	XM_233992.2	XM_233992.2		298910	62650513	XM_233992.2	LOC298910	XP_233992.1	ILMN_1356973	0006350162	S	361	GCGCAGTCAAGGCCTGAGACGACAACAATGACAAGAAAGCACAGGTGGCT				6q16	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (LOC298910), mRNA.					
Rattus norvegicus	RefSeq	GI_62643316	ILMN_64875	GNB4	XM_227042.3	XM_227042.3		294962	62643316	XM_227042.3	Gnb4	XP_227042.3	ILMN_1650941	0005890066	S	963	TGTCAGCGACCCTGCCTGTGGGACTTTGGTGAAACAGTGGGACACCGTCT				2q25	PREDICTED: Rattus norvegicus guanine nucleotide binding protein beta 4 subunit (Gnb4), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_24475718-S	ILMN_276934	ALDH1A7	NM_017272.15	NM_017272.15		29651	24475718	NM_017272.15	Aldh1a7	NP_058968.14	ILMN_1371599	0003870020	S	1851	TCTCGGTGACTTCTTGCCACTACTCACCATGCACAACTGAAAAGTCAGCC				1q51	Rattus norvegicus aldehyde dehydrogenase family 1, subfamily A7 (Aldh1a7), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence NAS]	The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A [goid 42574] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence IDA]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence TAS]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Aldh1a4; Aldhpb	Aldh1a4; Aldhpb
Rattus norvegicus	RefSeq	GI_62650653-S	ILMN_70380	STXBP6_PREDICTED	XM_343057.3	XM_343057.3		362734	109478180	XM_343057.3	Stxbp6_predicted	XP_343058.3	ILMN_1371013	0004560528	S	1042	GGCCGAGCAGAGGAGAAGACAGAAGACATGAAGAACAGTGCCCAGCAGTT	6	-	64255707-64255756	6q21	PREDICTED: Rattus norvegicus syntaxin binding protein 6 (amisyn) (predicted) (Stxbp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665419-S	ILMN_269838	DEF8	NM_001024774.1	NM_001024774.1		307973	67078473	NM_001024774.1	Def8	NP_001019945.1	ILMN_1353894	0001980136	S	1605	CAGGTGCTTGCTGAGACTTGGAGCGTGCATACCTGGCTGTTTAGTGGGCG	19	+	53779761-53779810	19q12	Rattus norvegicus differentially expressed in FDCP 8 homolog (mouse) (Def8), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.22934-S	ILMN_161863	RN.22934	Rn.22934		Rn.22934		82522363	DV729039			ILMN_2039420	0004280189	S	377	CCAGATGCTTGAGAGTGAGTTTAGAATCAAACTTCTGTGACAGATAAAAA					RVL21793 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_37591173-S	ILMN_269983	RALA	NM_031093.2	NM_031093.2		81757	37591173	NM_031093.2	Rala	NP_112355.1	ILMN_1365417	0000610075	S	472	GCTGACCAGTGGAACGTTAACTATGTGGAGACGTCTGCTAAAACGCGCGC	17	+	55024686-55024735	17q12.1	Rattus norvegicus v-ral simian leukemia viral oncogene homolog A (ras related) (Rala), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence NAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649987-S	ILMN_57846	PRDM2_MAPPED	XM_233620.4	XM_233620.4		313678	109475753	XM_233620.4	Prdm2_mapped	XP_233620.3	ILMN_1365863	0006400673	S	5187	CATCACCAGACAATGCAGAAAGGTCAAGGCCGCCGCAGCAACTCCGTTCC	5	-	161966077-161966126	5q36	PREDICTED: Rattus norvegicus PR domain containing 2, with ZNF domain (mapped) (Prdm2_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62663301-S	ILMN_57706	LOC498715	XM_579860.1	XM_579860.1		498715	62663301	XM_579860.1	LOC498715	XP_579860.1	ILMN_1356075	0000580369	S	778	GAATGACTGCCTGATGGATGGTAAAGGTTTCCTGTGCTACTGGGCAGGCC					PREDICTED: Rattus norvegicus LOC498715 (LOC498715), mRNA.					
Rattus norvegicus	RefSeq	GI_8394300-S	ILMN_292901	SLC2A3	NM_017102.1	NM_017102.1		25551	8394300	NM_017102.1	Slc2a3	NP_058798.1	ILMN_1358915	0004730035	S	1477	TTCGAGGGGCAGGCGCACTCTGGGAAAGGCTCTGCTGGTGTGGAGTTGAA	4	-	159210153-159210202	4q42	Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 3 (Slc2a3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of monosaccharides into, out of, within or between cells. Monosaccharides are the simplest carbohydrates; they are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 15749] [evidence IDA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence TAS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; The directed movement of the hexose monosaccharide glucose into a cell or organelle [goid 46323] [evidence IDA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence TAS]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IDA]; Catalysis of the transfer of monosaccharide from one side of the membrane to the other [goid 15145] [evidence IDA]; Interacting selectively with any glycoside in which the sugar moiety is galactose [goid 16936] [evidence IDA]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence IPI]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]; Interacting selectively with the D- or L-enantiomer of xylose [goid 33222] [evidence IDA]; Catalysis of the transfer of the dextrorotatory isomer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 55056] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]	GLUT3	GLUT3
Rattus norvegicus	RefSeq	GI_53850625-S	ILMN_288629	TINAG	NM_001005549.1	NM_001005549.1		300846	53850625	NM_001005549.1	Tinag	NP_001005549.1	ILMN_1352895	0002650154	S	1285	GCAGTTAAACTCACTGGATGGGGCACACTGAGAGGAGCACAAGGGAAGAA	8	+	81990622-81990638:82019233-82019265	8q24	Rattus norvegicus tubulointerstitial nephritis antigen (Tinag), mRNA.	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93772	MGC93772
Rattus norvegicus	RefSeq	GI_47577758-S	ILMN_296551	OLR1248	NM_001000452.1	NM_001000452.1		300573	47577758	NM_001000452.1	Olr1248	NP_001000452.1	ILMN_1352313	0005080019	S	342	CCTGACAGCAATGGCCTATGATCGTTATGTCGCTATTTGCAATCCACTCA	8	+	40710803-40710852	8q22	Rattus norvegicus olfactory receptor 1248 (Olr1248), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1248	Olr1248
Rattus norvegicus	RefSeq	GI_62651919-S	ILMN_66131	RDH5_PREDICTED	XM_345770.3	XM_345770.3		366791	109480151	XM_345770.3	Rdh5_predicted	XP_345771.3	ILMN_1357842	0002650079	S	639	AACAGGCCAGGGGGCGGGTGGTCAACATCACCAGTGTCTTGGGCCGAATA	7	-	2216010-2216059	7q11	PREDICTED: Rattus norvegicus retinol dehydrogenase 5 (predicted) (Rdh5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658703-S	ILMN_274636	FIS1	XM_001076962.1	XM_001076962.1		288584	109497168	XM_001076962.1	Fis1	XP_001076962.1	ILMN_1366427	0004150397	S	398	GTTACAGACTGAGCCCCAGAACAACCAGGCCAAGGAGCTGGAACGCCTGA				12q12	PREDICTED: Rattus norvegicus fission 1 (mitochondrial outer membrane) homolog (yeast) (Fis1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 31307] [evidence ISS]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 31307] [evidence ISS]	The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments [goid 266] [evidence ISS]; The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments [goid 266] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments [goid 16559] [evidence ISS]; The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments [goid 16559] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19924088-S	ILMN_289016	NME1	NM_138548.1	NM_138548.1		191575	19924088	NM_138548.1	Nme1	NP_612557.1	ILMN_1369051	0006980100	S	648	GGAACTTCTCTGAACTGGAAGAAGCCTCTGGGCGCTGTGACTCCCTGTGC	10	-	82591743-82591792	10q26	Rattus norvegicus non-metastatic cells 1, protein (NM23A) expressed in (Nme1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid leukocyte differentiation [goid 2762] [evidence IDA]; The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate [goid 6165] [evidence IDA]; The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence ISS]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IDA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_58865993-A	ILMN_296847	SFXN1	NM_001012213.1	NM_001012213.1		364678	58865993	NM_001012213.1	Sfxn1	NP_001012213.1	ILMN_1376571	0003990750	S	1942	TGGGTGTAGCTGAGGTTGCTTTGGAAGTCTGTGGCTATTCCACGTCATAG	17	-	16601226-16601275	17p14	Rattus norvegicus sideroflexin 1 (Sfxn1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506952-S	ILMN_290582	PCOLCE	NM_019237.1	NM_019237.1		29569	9506952	NM_019237.1	Pcolce	NP_062110.1	ILMN_1373978	0000460021	S	1210	CCTGGGTGTCTACAAAACCGGAGACCTGGACCTGCCCTCTCCAGCTAGTG	12	-	19672905-19672954	12q12	Rattus norvegicus procollagen C-endopeptidase enhancer (Pcolce), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105446; PCPE	MGC105446; PCPE
Rattus norvegicus	RefSeq	GI_34867258-S	ILMN_68123	LOC366354	XM_345519.1	XM_345519.1		366354	34867258	XM_345519.1	LOC366354	XP_345520.1	ILMN_1360536	0005550070	S	260	AGCAGTGGGAGGGCTATTCCTTCATCCCAGTTGCCACCTCCTGGACAGTC					PREDICTED: Rattus norvegicus similar to Cofilin, non-muscle isoform (Cofilin-1) (LOC366354), mRNA.					
Rattus norvegicus	RefSeq	GI_62649637-S	ILMN_62586	COL8A2_PREDICTED	XM_233542.3	XM_233542.3		313592	62649637	XM_233542.3	Col8a2_predicted	XP_233542.3	ILMN_1367715	0003870403	S	4432	CTGCCCTCTGCTTCCAATTTCCTGTTCTAAGCAGTGTAGGGCCCAGGAGG				5q36	PREDICTED: Rattus norvegicus procollagen, type VIII, alpha 2 (predicted) (Col8a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651172-S	ILMN_50446	LOC299262	XM_238465.3	XM_238465.3		299262	62651172	XM_238465.3	LOC299262	XP_238465.1	ILMN_1366946	0002510471	S	487	CAGCAGGGCAATGCTATCCTCATCACTGGAATTACAGAAGACCTGTGCTC					PREDICTED: Rattus norvegicus hypothetical LOC299262 (LOC299262), mRNA.					
Rattus norvegicus	RefSeq	GI_62641574-S	ILMN_69841	ZNF511_PREDICTED	XM_215107.4	XM_215107.4		293586	109459574	XM_215107.4	Znf511_predicted	XP_215107.3	ILMN_1367094	0003940072	S	945	GCAGATTCCAGAAATAACCAGGAACACTGAAGGAGGGAGGTGGAGAGACC	1	+	199826148-199826197	1q41	PREDICTED: Rattus norvegicus zinc finger protein 511 (predicted) (Znf511_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665295-S	ILMN_273380	RGD1565049_PREDICTED	XM_001077676.1	XM_001077676.1		498952	109508914	XM_001077676.1	RGD1565049_predicted	XP_001077676.1	ILMN_1363693	0004010102	S	1230	TCAGCAGGAAGTCTCGCCTCAGCGTCCACCAGAGGGTTCACATGGGATAG				19q12	PREDICTED: Rattus norvegicus similar to Zfp1 protein (predicted) (RGD1565049_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657571-S	ILMN_274943	PRSS7_PREDICTED	XM_001065283.1	XM_001065283.1		288291	109493841	XM_001065283.1	Prss7_predicted	XP_001065283.1	ILMN_1362776	0003390739	S	3083	CATTTGGAGTCCAGTGTGCACTGCCTAATCACCCTGGGGTATATGCCCGG				11q11	PREDICTED: Rattus norvegicus protease, serine, 7 (enterokinase) (predicted), transcript variant 3 (Prss7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576320-S	ILMN_268305	OLR1521	NM_001000039.1	NM_001000039.1		287613	47576320	NM_001000039.1	Olr1521	NP_001000039.1	ILMN_1361052	0003710427	S	682	CATTCTGGAGAAGCGAGGAGGAAGGTGGCGTCCACCTGCACCACCCACAT	10	-	76186093-76186142	10q26	Rattus norvegicus olfactory receptor 1521 (Olr1521), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1521	Olr1521
Rattus norvegicus	RefSeq	GI_8394534-S	ILMN_48835	TRPV2	NM_017207.2	NM_017207.2		29465	78187980	NM_017207.2	Trpv2	NP_058903.2	ILMN_2039689	0004290133	S	2553	CCCAACCTCTAAACCGGGGAAGAACAGTGCCTCAGAGGAAGACCATCTGC	10	+	48785967-48786016	10q23	Rattus norvegicus transient receptor potential cation channel, subfamily V, member 2 (Trpv2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus [goid 9266] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]	Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC105451; Vrl1	MGC105451; Vrl1
Rattus norvegicus	RefSeq	GI_11560084-S	ILMN_48683	CTGF	NM_022266.2	NM_022266.2		64032	78214357	NM_022266.2	Ctgf	NP_071602.1	ILMN_1364113	0004200070	S	2203	CCACGAGGAAGTGTTTGCTGCTTCTTTGACTATGACTGGTTTGGGAGGCA	1	-	21327182-21327231	1p12	Rattus norvegicus connective tissue growth factor (Ctgf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence TAS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]	Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence TAS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]	CTGRP	CTGRP
Rattus norvegicus	RefSeq	GI_62653667-S	ILMN_64634	RGD1565078_PREDICTED	XM_236237.4	XM_236237.4		315658	109483478	XM_236237.4	RGD1565078_predicted	XP_236237.4	ILMN_1351835	0007050332	S	1032	TGTCCAGGGCAGGCGCGTGGTGTGCTATGACGACAGGTTCATCGTGAAGC	8	-	55482881-55482930	8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23231 (predicted) (RGD1565078_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667556-S	ILMN_269046	UBL4A_PREDICTED	XM_001055202.1	XM_001055202.1		293864	109462312	XM_001055202.1	Ubl4a_predicted	XP_001055202.1	ILMN_1372555	0002450750	S	923	GGGCCTTAGCATTCCCTTTAGCCCACTCAGCATACACCCTCAAAAGACTC				Xq37	PREDICTED: Rattus norvegicus ubiquitin-like 4a (predicted) (Ubl4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643843-S	ILMN_67835	LOC499664	XM_580000.1	XM_580000.1		499664	62643843	XM_580000.1	LOC499664	XP_580000.1	ILMN_1353063	0000360541	S	395	AGACAAATGGTGCTGGAGTAGCACATGCTCAGAAGACACCCCGATGCCTG					PREDICTED: Rattus norvegicus LOC499664 (LOC499664), mRNA.					
Rattus norvegicus	RefSeq	GI_62644313-S	ILMN_69677	LOC310879	XM_227715.3	XM_227715.3		310879	62644313	XM_227715.3	LOC310879	XP_227715.3	ILMN_1352062	0001230152	S	5276	CTTCAGTGTTAAGGAGAGGTGTCGGTGCCCAGAAGTCACCACCCGCCTAG				2q42	PREDICTED: Rattus norvegicus similar to lymphocyte alpha-kinase (predicted) (LOC310879), mRNA.					
Rattus norvegicus	RefSeq	GI_57527945-S	ILMN_280628	GPM6A	NM_178105.2	NM_178105.2		306439	57527945	NM_178105.2	Gpm6a	NP_835206.1	ILMN_1367162	0002680131	S	2707	GTGCCAACAGCTTGATGGTGGCGTTTTTGAAATGTAGAACAAAGTGCTTG	16	-	39670787-39670836	16p11	Rattus norvegicus glycoprotein m6a (Gpm6a), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]		Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IDA]	M6a	M6a
Rattus norvegicus	RefSeq	GI_62644604-S	ILMN_61419	LOC365969	XM_345306.2	XM_345306.2		365969	62644604	XM_345306.2	LOC365969	XP_345307.2	ILMN_1373255	0002510037	S	739	TCCCCCAGGTACTCCAGACTTCCTGCATTTCCATGCAGCTGGTAGAATGA					PREDICTED: Rattus norvegicus similar to cystinosin (LOC365969), mRNA.					
Rattus norvegicus	RefSeq	GI_62665949-S	ILMN_50938	LOC499427	XM_574752.1	XM_574752.1		499427	62665949	XM_574752.1	LOC499427	XP_574752.1	ILMN_1373588	0004850181	S	363	GGAAAAACTGGCTGGTTTGGTGGAAGAGCTGGAGGCTGATGAGTGGCGGT					PREDICTED: Rattus norvegicus similar to hypothetical protein D10Ertd641e (LOC499427), mRNA.					
Rattus norvegicus	RefSeq	GI_62651850	ILMN_62773	RGD1566251_PREDICTED	XM_234969.3	XM_234969.3		299668	109480350	XM_234969.3	RGD1566251_predicted	XP_234969.1	ILMN_1650788	0006400286	S	1274	ACCTGATTCTATCAGGACTCAATATGGGCAGGTGTGTCTCCATGCCTCCC	7	+	17437558-17437607	7q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1566251_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424237-S	ILMN_268321	NAT8B	NM_133558.1	NM_133558.1		171084	19424237	NM_133558.1	Nat8b	NP_598242.1	ILMN_1365024	0006100707	S	658	AGACTAGCACCATGCAGATAGGTGCTGTGACCCTCTACCTGGGCATGGGT	4	-	120082751-120082800	4q34	Rattus norvegicus N-acetyltransferase 8B (Nat8b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence NAS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93215; Nat8	MGC93215; Nat8
Rattus norvegicus	RefSeq	GI_62646023-S	ILMN_64616	LOC499911	XM_575255.1	XM_575255.1		499911	62646023	XM_575255.1	LOC499911	XP_575255.1	ILMN_1369338	0002320139	S	338	CCCTGGAGGGCGTGTTGTGCGCTGGGGATTTAGTAGCACAAAGCATGAAA				3q41	PREDICTED: Rattus norvegicus similar to Chain A, Solution Structure Of Rabbit Apo-S100a11 (19 Models) (LOC499911), mRNA.					
Rattus norvegicus	RefSeq	GI_61556776-S	ILMN_266127	SLC39A11	NM_001013042.1	NM_001013042.1		287796	61556776	NM_001013042.1	Slc39a11	NP_001013060.1	ILMN_1365793	0003140136	S	1128	CCTTGGGACCCCATGAAGGAAAGCACCAGACTTCTGCAGGACCATGAGCC	10	-	102863488-102863537	10q32.1	Rattus norvegicus solute carrier family 39 (metal ion transporter), member 11 (Slc39a11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657124-S	ILMN_66889	RGD1561285_PREDICTED	XM_220927.4	XM_220927.4		303555	109489045	XM_220927.4	RGD1561285_predicted	XP_220927.4	ILMN_1372705	0001240551	S	1418	TCAATGAGAGCACAGAAGCGCAAGGGTCTGGAACCAAGTCAGGTGCACTC	10	+	90640597-90640646	10q32.1	PREDICTED: Rattus norvegicus similar to c114 SLIT-like testicular protein (predicted) (RGD1561285_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657284-S	ILMN_55563	ABCA9_PREDICTED	XM_221101.3	XM_221101.3		287788	62657284	XM_221101.3	Abca9_predicted	XP_221101.3	ILMN_1349264	0003120300	S	4268	CTGTGGGTATCGTCATTACTATGAGAGAAACCTGTCCCAAGGGCTGCCAC				10q32.1	PREDICTED: Rattus norvegicus ATP-binding cassette transporter sub-family A member 9 (predicted) (Abca9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656346-S	ILMN_61626	RGD1563179_PREDICTED	XM_340830.3	XM_340830.3		360551	109488397	XM_340830.3	RGD1563179_predicted	XP_340831.2	ILMN_1372647	0004810121	S	1604	TGACACCTTAATCTTGTACTGAGGGAGAGCGGGGGTGGCAGATCCTGGCT	10	-	57064971-57065020	10q24	PREDICTED: Rattus norvegicus similar to BAZF (predicted) (RGD1563179_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665181-S	ILMN_278769	CENPT	NM_001024257.1	NM_001024257.1		307805	66730426	NM_001024257.1	Cenpt	NP_001019428.1	ILMN_1357040	0004060603	S	1297	GCCCGTGGAGAAAGCGGCTCTTGAGATGGTAGAGAAGTGCCTAGACGAGT	19	-	35680406-35680417:35680499-35680536	19q12	Rattus norvegicus centromere protein T (Cenpt), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]		Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC112755	MGC112755
Rattus norvegicus	Unigene	Rn.37378	ILMN_160741	RN.37378	Rn.37378		Rn.37378		29495660	CB556260			ILMN_1530216	0006180112	S	190	TTAATAAATAAGAGGAATGTATCCATCACTTTGCGAAAAAATACTAAGCC					AMGNNUC:SRVC1-00132-G5-A srvc1 (10901) Rattus norvegicus genomic clone srvc1-00132-g5 5', mRNA					
Rattus norvegicus	RefSeq	GI_62663314-S	ILMN_58514	ECM2_PREDICTED	XM_214443.3	XM_214443.3		291018	62663314	XM_214443.3	Ecm2_predicted	XP_214443.3	ILMN_1370248	0004570707	S	1280	CCAAATTGAACGGATCCCTGGCTATGTGTTTGGCCACATGAAACCAGGCC					PREDICTED: Rattus norvegicus extracellular matrix protein 2, female organ and adipocyte specific (predicted) (Ecm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855232-S	ILMN_58819	PTGIR_PREDICTED	XM_218457.3	XM_218457.3		292661	109458257	XM_218457.3	Ptgir_predicted	XP_218457.3	ILMN_1362555	0000940722	S	851	TCACGATCAGAGGATTCACGCAGGCCATCGCCCCAGACAGCAGAGAGATG	1	+	77235470-77235474:77236499-77236543	1q21	PREDICTED: Rattus norvegicus prostaglandin I receptor (IP) (predicted) (Ptgir_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651899-S	ILMN_275219	CHST11_PREDICTED	XM_235007.3	XM_235007.3		314694	62651899	XM_235007.3	Chst11_predicted	XP_235007.3	ILMN_1368516	0000450440	S	1832	CAGTCTGTGCCTTGCTGGCTATGTCTGGTTTGGGGGGCGTGGTTACCTCC	7	-	22722001-22722050	7q13	PREDICTED: Rattus norvegicus carbohydrate sulfotransferase 11 (predicted) (Chst11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660780-S	ILMN_54934	LOC498408	XM_573654.1	XM_573654.1		498408	62660780	XM_573654.1	LOC498408	XP_573654.1	ILMN_1369296	0002900484	S	1333	CATGTTGGACGGAGGAGGGGGAGCGGTTGTCACTGCAAAGCGATGACTCT					PREDICTED: Rattus norvegicus similar to Cerebral cavernous malformation 2 homolog (LOC498408), mRNA.					
Rattus norvegicus	RefSeq	GI_15011896-S	ILMN_299403	NIBAN	NM_022242.2	NM_022242.2		63912	15011896	NM_022242.2	Niban	NP_071578.1	ILMN_1366304	0004760687	S	3298	AGTCATGAACCAGGCACCCCTGTCCTGCAAAGTACAGAGCCAGTCACCGC	13	+	66619801-66619850	13q21	Rattus norvegicus niban protein (Niban), mRNA.					
Rattus norvegicus	RefSeq	GI_62642229-S	ILMN_54610	RBP4	XM_215285.4	XM_215285.4		25703	109460093	XM_215285.4	Rbp4	XP_215285.3	ILMN_1354144	0005270154	S	1044	GTCACCATCTTCCTGTGAGTTGCAGACTTCTTTGTGGTCCAGCTGCAGGT	1	-	242443753-242443802	1q53	PREDICTED: Rattus norvegicus retinol binding protein 4, plasma (Rbp4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Protection of epithelial surfaces of the gastrointestinal tract from proteolytic and caustic digestive agents [goid 30277] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence ISS]; The process by which the anatomical structures of female genitalia are generated and organized. Morphogenesis pertains to the creation of form [goid 48807] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51024] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell proliferation [goid 60044] [evidence ISS]; The process by which the anatomical structure of the retina is generated and organized in a camera-type eye during the embryonic life stage . Morphogenesis pertains to the creation of form [goid 60059] [evidence ISS]; The reproductive developmental process whose specific outcome is the progression of the uterus over time, from its formation to the mature structure [goid 60065] [evidence ISS]; The reproductive developmental process whose specific outcome is the progression of the vagina over time, from its formation to the mature structure [goid 60068] [evidence ISS]; The process whose specific outcome is the progression of the urinary bladder over time, from its formation to the mature structure. The urinary bladder is an elastic, muscular sac situated in the anterior part of the pelvic cavity in which urine collects before excretion [goid 60157] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence TAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina [goid 16918] [evidence IEA]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence TAS]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641706-S	ILMN_272926	RGD1311490_PREDICTED	XM_001071145.1	XM_001071145.1		361697	109463324	XM_001071145.1	RGD1311490_predicted	XP_001071145.1	ILMN_1366857	0006040524	S	1187	AGCAGCTGGCTGGGATGCGAGGAGGCGCCAAACCTGAGATACCTCGAATT				1q42	PREDICTED: Rattus norvegicus similar to DKFZP434P1750 protein (predicted) (RGD1311490_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667013-S	ILMN_61560	RGD1565951_PREDICTED	XM_234130.4	XM_234130.4		314107	109510825	XM_234130.4	RGD1565951_predicted	XP_234130.4	ILMN_1359994	0003450162	S	2066	AGCAAAGCGGTCTCCTTAACCTTGCTGAGGCTGGGAGGGTTCGTCAGCCT	X	-	81271956-81272005	Xq31	PREDICTED: Rattus norvegicus similar to FAM48A protein (predicted) (RGD1565951_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654814-S	ILMN_284132	LOC690038	XM_001073000.1	XM_001073000.1		690038	109485915	XM_001073000.1	LOC690038	XP_001073000.1	ILMN_1366634	0005050204	S	486	GAGGCGATTGGAGACTCTGCTGAGGAACATTGACAACTCCGACAAAGCCA	9	-	32492133-32492182	9q21	PREDICTED: Rattus norvegicus similar to Bcl2-associated athanogene 2 (LOC690038), mRNA.					
Rattus norvegicus	RefSeq	GI_62638341-S	ILMN_67469	LOC365063	XM_344801.2	XM_344801.2		365063	62638341	XM_344801.2	LOC365063	XP_344802.2	ILMN_1355017	0007040136	S	1151	GGTAGAGGCACAATCAACTGCTCACTTCAACTGGGTGGACCCGAGGCAGC				1p12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC365063), mRNA.					
Rattus norvegicus	RefSeq	GI_62659246-S	ILMN_289462	RGD1560333_PREDICTED	XR_007508.1	XR_007508.1		363976	109498554	XR_007508.1	RGD1560333_predicted		ILMN_1355665	0003840292	S	429	CCATCTCCGTTGGCTGGCAGGACCACAACCAACGCAAACTGACATGCTCC				13q11	PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (predicted) (RGD1560333_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34851679-S	ILMN_298689	RGD1564764_PREDICTED	XR_008958.1	XR_008958.1		291941	109508733	XR_008958.1	RGD1564764_predicted		ILMN_1369963	0005290059	S	238	GCCATCAAGTCCAAGATGCCAAGGCGTCCCAGCCACAAACTCAGCCGTCC				19q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1564764_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658921-A	ILMN_264343	OAS1D	NM_001009379.1	NM_001009379.1		304508	57222291	NM_001009379.1	Oas1d	NP_001009379.1	ILMN_1376885	0001770739	S	1429	GGGGGGTGTGCACTCTGAGGGATGGGGCCTTAGAAGTACGTGTATGACTT	12	-	36784848-36784897	12q16	Rattus norvegicus 2'-5' oligoadenylate synthetase 1D (Oas1d), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor [goid 51348] [evidence ISS]	Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Oas1d	Oas1d
Rattus norvegicus	RefSeq	GI_62644516-S	ILMN_282934	CLCA2_PREDICTED	XM_001079234.1	XM_001079234.1		308016	109467757	XM_001079234.1	Clca2_predicted	XP_001079234.1	ILMN_1361466	0004050040	S	2590	GCCCTGAGAGCCATGGATAGAAGCTCCCTCCGGTCAGCTGTGTCAAACAT				2q44	PREDICTED: Rattus norvegicus chloride channel, calcium activated, family member 2 (predicted) (Clca2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649339-S	ILMN_69593	LOC500517	XM_575878.1	XM_575878.1		500517	62649339	XM_575878.1	LOC500517	XP_575878.1	ILMN_1352172	0004480070	S	1129	AGCCCACACAGTCACCCCACACTAGGGGTACAGGAGCTATGCGTGTTGCA					PREDICTED: Rattus norvegicus similar to novel protein (LOC500517), mRNA.					
Rattus norvegicus	RefSeq	GI_62643779-S	ILMN_64519	TRIM46_PREDICTED	XM_227414.4	XM_227414.4		310641	109465052	XM_227414.4	Trim46_predicted	XP_227414.3	ILMN_1365258	0007100440	S	2880	CTCTTGCATGCTTTACCTATCCAGCACCCATGCCAACGTGCCAAGTCTCC	2	-	181404559-181404608	2q34	PREDICTED: Rattus norvegicus tripartite motif protein 46 (predicted) (Trim46_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51556262-S	ILMN_302685	PRSSL1	NM_001003956.1	NM_001003956.1		408241	51556262	NM_001003956.1	Prssl1	NP_001003956.1	ILMN_1362309	0006860148	S	490	TCCGTGTCTGACTTTGAGGAGCCTCCACCTGGGCTGATGGAAGTCGAGGT	7	+	11435708-11435757	7q11	Rattus norvegicus protease, serine-like 1 (Prssl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Df2	Df2
Rattus norvegicus	RefSeq	GI_61557384-S	ILMN_271859	RNASEH2A	NM_001013234.1	NM_001013234.1		364974	61557384	NM_001013234.1	Rnaseh2a	NP_001013252.1	ILMN_1361161	0001190088	S	1373	GTGGACCCTGTGTTTGGCTTCCCCCAGTTTGTACGGTTCAGTTGGAGCAC	19	+	24851532-24851538:24851641-24851683	19q11	Rattus norvegicus ribonuclease H2, large subunit (Rnaseh2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters [goid 4523] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758547-S	ILMN_297211	NTN1	NM_053731.1	NM_053731.1		114523	16758547	NM_053731.1	Ntn1	NP_446183.1	ILMN_1351361	0000360537	S	1580	GTATACGCCGTGGTGACCAGAGTTTGTGGATCCGTTCGCGAGACATCGCT	10	-	54950706-54950755	10q24	Rattus norvegicus netrin 1 (Ntn1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence NAS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The directed movement of the nucleus to a specific location within a cell [goid 40023] [evidence ISS]; The directed movement of the nucleus to a specific location within a cell [goid 40023] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	netrin-1	netrin-1
Rattus norvegicus	RefSeq	GI_10048482-S	ILMN_297415	PCLO	NM_020098.1	NM_020098.1		56768	10048482	NM_020098.1	Pclo	NP_064483.1	ILMN_1365036	0004810441	S	15611	CAGGCCAGAGACACTGGATTGCTCATAGCTGTGAAGAGAAGCTCTGAGAG	4	-	15911359-15911408	4q12	Rattus norvegicus piccolo (presynaptic cytomatrix protein) (Pclo), transcript variant 1, mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 10707984] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; The process by which synaptic vesicles are directed to specific destination membranes, mediated by molecules at the vesicle membrane and target membrane surfaces [goid 16080] [pmid 10707984] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin [goid 5522] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [pmid 11285225] [evidence IDA]; Interacting selectively with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin [goid 5522] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [pmid 11285225] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	aczonin	aczonin
Rattus norvegicus	RefSeq	GI_62655391	ILMN_67164	LOC367314	XM_346074.2	XM_346074.2		367314	62655391	XM_346074.2	LOC367314	XP_346075.2	ILMN_1651039	0006590717	S	1980	TGGAACCACAAGCCATTACCAAGCAAAGCTCCTCCTTTGGGGACGAGGCG				9q36	PREDICTED: Rattus norvegicus similar to FLI-LRR associated protein-1 (LOC367314), mRNA.					
Rattus norvegicus	RefSeq	GI_47087104-S	ILMN_294313	RAB2L	NM_212547.1	NM_212547.1		294283	47087104	NM_212547.1	Rab2l	NP_997712.1	ILMN_1371026	0006130270	S	3737	CAAGAGGTTCTGTTGGGGGTTTCTTGTCCCGCTTTGGGGGTTCTTGCCAC	20	-	5100299-5100348	20p12	Rattus norvegicus RAB2, member RAS oncogene family-like (Rab2l), mRNA.				Rgl2; MGC124925; Ke1.5	Rgl2; MGC124925; Ke1.5
Rattus norvegicus	RefSeq	GI_62639192-S	ILMN_277282	CYP2B15	XM_001070818.1	XM_001070818.1		29295	109461449	XM_001070818.1	Cyp2b15	XP_001070818.1	ILMN_1373225	0005720176	S	1575	CCTCATGTTTCTGCCTCTGGGGGACCTGCTGAAAACCAGGCTCAAGGCCA				1q21	PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily b, polypeptide 15, transcript variant 2 (Cyp2b15), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651002	ILMN_65331	IFI27L	XM_579614.1	XM_579614.1		170512	62651002	XM_579614.1	Ifi27l	XP_579614.1	ILMN_1650955	0000610139	S	241	CCCATTGGAGTCAAGACTGCTGTCGCCATGCTTGGGGGAGCCATGACAGT				6q32	PREDICTED: Rattus norvegicus interferon, alpha-inducible protein 27-like (Ifi27l), mRNA.					
Rattus norvegicus	RefSeq	GI_38454271-S	ILMN_275224	PDE8A	NM_198767.1	NM_198767.1		308776	38454271	NM_198767.1	Pde8a	NP_942062.1	ILMN_1365692	0002760242	S	2502	GAGCTGTGCACCCTCCGGCCCCCTCCAGAATAGTGGGAGGTACACACTAG	1	+	137544279-137544311:137544312-137544328	1q31	Rattus norvegicus phosphodiesterase 8A (Pde8a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6198] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Alters the level of transcription of target genes, usually by binding to a transcription factor, when phosphorylated by a sensor that detects the presence of a particular signal substance outside the cell [goid 156] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RNPDE8A	RNPDE8A
Rattus norvegicus	RefSeq	GI_62655856-S	ILMN_58316	LOC287132	XM_213241.3	XM_213241.3		287132	62655856	XM_213241.3	LOC287132	XP_213241.3	ILMN_1366271	0002940538	S	250	TTCAACAAGGAAAGATCCCTCCAGCTCCTGGGATGAGACCACCCATGGGA					PREDICTED: Rattus norvegicus similar to U1 snRNP-specific protein C (LOC287132), mRNA.					
Rattus norvegicus	RefSeq	GI_13540674-S	ILMN_277522	LRRN3	NM_030856.1	NM_030856.1		81514	13540674	NM_030856.1	Lrrn3	NP_110483.1	ILMN_1369908	0002450309	S	2926	CATCGCCAATGCTGCTCCTGACCAAGGGAAAGAGAGGTGAAAGTTCGGCA	6	-	60745612-60745661	6q21	Rattus norvegicus leucine rich repeat neuronal 3 (Lrrn3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Nlrr3	Nlrr3
Rattus norvegicus	RefSeq	GI_16758577-S	ILMN_270436	DPP3	NM_053748.1	NM_053748.1		114591	16758577	NM_053748.1	Dpp3	NP_446200.1	ILMN_1350938	0002570239	S	2399	GTCCTCATTTCCTGGATCTGCACTGCCATCTGTGGTGGGAGCTCAACAGG	3	+	138288675-138288724	3q41	Rattus norvegicus dipeptidylpeptidase 3 (Dpp3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124585	MGC124585
Rattus norvegicus	RefSeq	GI_13928933-S	ILMN_274623	CTLA4	NM_031674.1	NM_031674.1		63835	13928933	NM_031674.1	Ctla4	NP_113862.1	ILMN_1358654	0004200014	S	470	GCCCAGATTCAGACTTCCTCCTTTGGATCCTTGCTGCAGTTAGTTCGGGG	9	+	59499760-59499809	9q31	Rattus norvegicus cytotoxic T-lymphocyte-associated protein 4 (Ctla4), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]	sCTLA4; Cd152; CTLA-4	sCTLA4; Cd152; CTLA-4
Rattus norvegicus	RefSeq	GI_62640912-S	ILMN_279882	RGD1564695_PREDICTED	XM_001063232.1	XM_001063232.1		499205	109462433	XM_001063232.1	RGD1564695_predicted	XP_001063232.1	ILMN_1351175	0006040315	S	1169	AGGCAACATGACCTTGAACGAGCCTGTGCGCCTCTTGTACCCCACAGCCT				1q32	PREDICTED: Rattus norvegicus similar to A830059I20Rik protein (predicted) (RGD1564695_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718646-A	ILMN_280307	TRIP10	NM_053920.1	NM_053920.1		116717	16758799	NM_053920.1	Trip10	NP_446372.1	ILMN_1376598	0002970278	S	1643	GAGGCGAGGGCTATGTGCCCACCTCTTACCTCCGAGTCACACTCAACTGA	Un|NW_047936.1	+	141021-141070		Rattus norvegicus thyroid hormone receptor interactor 10 (Trip10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment [goid 42538] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_9506938-S	ILMN_277515	NTRK3	NM_019248.1	NM_019248.1		29613	9506938	NM_019248.1	Ntrk3	NP_062121.1	ILMN_1362434	0003940113	S	2492	GGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAGTGGTGACTGGTG	1	-	133925670-133925682:133925683-133925719	1q31	Rattus norvegicus neurotrophic tyrosine kinase, receptor, type 3 (Ntrk3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11784714] [evidence EXP]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11248116] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 9560161] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 11007890] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 10908605] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 15167895] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [pmid 7970708] [evidence EXP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; Any process that activates, maintains or increases the rate of axon extension involved in regeneration [goid 48691] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Combining with neurotrophin, any of a family of growth factors that block apoptosis in neurons and thus promote nerve growth, to initiate a change in cell activity [goid 5030] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	trkC	trkC
Rattus norvegicus	RefSeq	GI_62643805-S	ILMN_65838	RGD1564171_PREDICTED	XM_574980.2	XM_574980.2		499656	109465098	XM_574980.2	RGD1564171_predicted	XP_574980.2	ILMN_1357903	0002360170	S	78	TAGCACTGTCCAACAAACAGCTCCTGCTGGTCCGTCAAGCTGCCTTGCAC	2	+	182289562-182289590:182290578-182290598	2q34	PREDICTED: Rattus norvegicus RGD1564171 (predicted) (RGD1564171_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34874292-S	ILMN_51849	NEIL2_PREDICTED	XM_224276.3	XM_224276.3		305957	109501799	XM_224276.3	Neil2_predicted	XP_224276.2	ILMN_1356635	0005220368	S	986	CAATGCCAGCCCCAGCTGTCATCTGAGGGGCCACAGAATCTACTGTCCTC	15	-	42458579-42458628	15p12	PREDICTED: Rattus norvegicus nei like 2 (E. coli) (predicted) (Neil2_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.12649	ILMN_290348	RGD1307736	NM_001013983.1	NM_001013983.1		304543	62078694	NM_001013983.1	RGD1307736	NP_001014005.1	ILMN_1530401	0002810110	S	1477	TTCTGAGTTTATGTCCAAATGTGGTTTCAGAATTCATGGTATTCCAAGTA	12	+	42740068-42740117	12q16	Rattus norvegicus similar to Hypothetical protein KIAA0152 (RGD1307736), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC108831	MGC108831
Rattus norvegicus	RefSeq	GI_62653704-S	ILMN_66333	ZNF291	XM_343394.3	XM_343394.3		117521	109483462	XM_343394.3	Znf291	XP_343395.3	ILMN_1353732	0005050195	S	3448	GGTGAACATGGGTCTGATTGACAGACTTCGTGGCTGCTTCCTCTCAGTGC	8	-	59160488-59160537	8q24	PREDICTED: Rattus norvegicus zinc finger protein 291 (Znf291), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643884-S	ILMN_267655	RGD1565234_PREDICTED	XM_001055604.1	XM_001055604.1		295263	109467156	XM_001055604.1	RGD1565234_predicted	XP_001055604.1	ILMN_1371399	0004280112	S	1112	CAGCAGCCCAACGGAGTGGATTTCACCGTGGTTGAGGAGGTGGCTGAAGT				2q34	PREDICTED: Rattus norvegicus similar to transcription factor GABP beta 2-1 chain - mouse (predicted), transcript variant 2 (RGD1565234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25282464-S	ILMN_298022	GATA4	NM_144730.1	NM_144730.1		54254	25282464	NM_144730.1	Gata4	NP_653331.1	ILMN_1362302	0002320438	S	3059	TCATCACCCACAGAGCTGTAGCCAACTGTGGCATTACCTTGTTTTGCCCC	15	-	42472995-42473044	15p12	Rattus norvegicus GATA binding protein 4 (Gata4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence TAS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence TAS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor [goid 10575] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; The establishment, maintenance and elaboration of cell differentiation that results in the anterior/posterior subdivision of the embryonic heart tube. In Drosophila this results in subdivision of the dorsal vessel into to the posterior heart proper and the anterior aorta [goid 35054] [evidence ISS]; The establishment, maintenance and elaboration of cell differentiation that results in the anterior/posterior subdivision of the embryonic heart tube. In Drosophila this results in subdivision of the dorsal vessel into to the posterior heart proper and the anterior aorta [goid 35054] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence ISS]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IEA]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence ISS]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IEA]; The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48617] [evidence ISS]; The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48617] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence ISS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence TAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651709-S	ILMN_264454	PIAS4	XM_001075850.1	XM_001075850.1		362827	109481539	XM_001075850.1	Pias4	XP_001075850.1	ILMN_1350071	0001340484	S	1572	CCTGGAGAACGGCAAGACAGGCGCAGACGTGGTGGACCTCACACTGGACA				7q11	PREDICTED: Rattus norvegicus protein inhibitor of activated STAT, 4 (Pias4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence IEA]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_12408327-S	ILMN_278152	SLC13A3	NM_022866.1	NM_022866.1		64846	12408327	NM_022866.1	Slc13a3	NP_074057.1	ILMN_1350578	0000630673	S	2891	GCTGACACCAGAGGTGGAACCATCACTTCCTCCAGAGGGTGGACATCCGA	3	-	156448140-156448189	3q42	Rattus norvegicus solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 (Slc13a3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IDA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence ISS]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of dicarboxylic acids from one side of the membrane to the other. A dicarboxylic acid is an organic acid with two COOH groups [goid 5310] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations [goid 15362] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations [goid 15362] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations [goid 15362] [evidence IEA]	Nadc3	Nadc3
Rattus norvegicus	RefSeq	GI_17865328-S	ILMN_283475	GJB6	NM_053388.1	NM_053388.1		84403	17865328	NM_053388.1	Gjb6	NP_445840.1	ILMN_1364906	0006180070	S	1517	CTTCACACTGTCTGAGGACGGTTTGGTGAGCTAGTGTGTGTGCCTGGGAT	15	-	36177886-36177935	15p12	Rattus norvegicus gap junction protein, beta 6 (Gjb6), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence NAS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The process by which the anatomical structures of the ear are generated and organized. Morphogenesis pertains to the creation of form. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 42471] [evidence IEA]; The process by which the anatomical structures of the ear are generated and organized. Morphogenesis pertains to the creation of form. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 42471] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cx30	Cx30
Rattus norvegicus	RefSeq	GI_61556747-S	ILMN_266288	TSPYL1	NM_001013033.1	NM_001013033.1		29544	61556747	NM_001013033.1	Tspyl1	NP_001013051.1	ILMN_1351663	0001400309	S	2024	GACAGGATGAGAGCTTTCATATTTTGGCCAGTCATTGGTGATGGGAAGAG	20	+	38624311-38624360	20q12	Rattus norvegicus TSPY-like 1 (Tspyl1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_18644717-S	ILMN_298466	RGS3	NM_019340.1	NM_019340.1		54293	18644717	NM_019340.1	Rgs3	NP_062213.1	ILMN_1370455	0004760176	S	3558	GGCAGCTGGGCCTTCTAGACTGACATGACCTTGGAGGGGATGCTGCAGAA	5	+	79708881-79708930	5q24	Rattus norvegicus regulator of G-protein signaling 3 (Rgs3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	SRB-RGS	SRB-RGS
Rattus norvegicus	RefSeq	GI_62646355-S	ILMN_283988	TNNC2	NM_001037351.1	NM_001037351.1		296369	82654193	NM_001037351.1	Tnnc2	NP_001032428.1	ILMN_1373449	0003440041	S	324	CGGTTACATTGATGCCGAGGAGCTGGCTGAGATTTTCCGGGCTTCTGGGG	3	-	155807535-155807584	3q42	Rattus norvegicus troponin C type 2 (fast) (Tnnc2), mRNA.	A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IEA]	A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence ISS]; A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660618-S	ILMN_270404	EVC	XM_001056511.1	XM_001056511.1		289712	109500719	XM_001056511.1	Evc	XP_001056511.1	ILMN_1355588	0002030438	S	2860	AAGCCGGTAAGGACCAAAAGGAAGAAGCCCCCACCTCGGGAGAGAGAGGA				14q21	PREDICTED: Rattus norvegicus Ellis van Creveld gene homolog (human) (Evc), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62660616-S	ILMN_270404	EVC	XM_001056511.1	XM_001056511.1		289712	109500719	XM_001056511.1	Evc	XP_001056511.1	ILMN_1374595	0005050471	S	1797	ATTCCGCAGACGACAGTGGGGGCTCCTGTGTGACCTCTTGGAGCAGGACA				14q21	PREDICTED: Rattus norvegicus Ellis van Creveld gene homolog (human) (Evc), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_14091739-S	ILMN_302454	C3AR1	NM_032060.1	NM_032060.1		84007	14091739	NM_032060.1	C3ar1	NP_114449.1	ILMN_1365504	0000940576	S	1741	GCCCGTGGGGACCAATGTCTTAACAGGCCCCCTTGTTTCCACCAATGTTA	4	-	159326636-159326685	4q42	Rattus norvegicus complement component 3a receptor 1 (C3ar1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with anaphylatoxin C3a to initiate a change in cell activity [goid 4943] [evidence IDA]; Combining with anaphylatoxin C3a to initiate a change in cell activity [goid 4943] [evidence IPI]; Combining with anaphylatoxin C3a to initiate a change in cell activity [goid 4943] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40786442-S	ILMN_277095	SIL1	NM_199376.1	NM_199376.1		291673	40786442	NM_199376.1	Sil1	NP_955408.1	ILMN_1372141	0006620148	S	1456	AGCTTGGTGAAGGAGCTAAGATGAGGCTGCCACGCTGAGACAGGACTGGA	18	-	27780929-27780978	18p11	Rattus norvegicus endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae) (Sil1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC72590	MGC72590
Rattus norvegicus	RefSeq	GI_62667456-S	ILMN_63686	TMEM32_PREDICTED	XM_229191.3	XM_229191.3		302864	109511260	XM_229191.3	Tmem32_predicted	XP_229191.1	ILMN_1371380	0004760278	S	1584	GCTTCTGACTGAAAGCTGGCCTGGAGTTTTCCATCTTCACTCTGCGGTGC	X	-	141126488-141126537	Xq36	PREDICTED: Rattus norvegicus transmembrane protein 32 (predicted) (Tmem32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663522-S	ILMN_59928	LOC502119	XM_577564.1	XM_577564.1		502119	62663522	XM_577564.1	LOC502119	XP_577564.1	ILMN_1363442	0002940048	S	605	GGCAGCTTACCTCGATCGCTCCCTTGTGAAGCTCCAGCGCCTTGTGTGTT					PREDICTED: Rattus norvegicus similar to oxysterol binding protein 2 isoform a (LOC502119), mRNA.					
Rattus norvegicus	RefSeq	GI_62658148-S	ILMN_288640	CHRD	XM_001059575.1	XM_001059575.1		117275	109494653	XM_001059575.1	Chrd	XP_001059575.1	ILMN_1363191	0005390348	S	2885	CATGACCAAGAGGATGGGCCTGAACTGGGAGAAGGAGTGGTGCTGAGGAC				11q23	PREDICTED: Rattus norvegicus chordin (Chrd), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in the spatial identity of regions along the dorsal-ventral axis of the spinal cord [goid 21919] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with syndecan, an integral membrane proteoglycan (250-300 kDa) associated largely with epithelial cells [goid 45545] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642245-A	ILMN_55260	CYP2C6	XM_574666.1	XM_574666.1		246070	62642245	XM_574666.1	Cyp2c6	XP_574666.1	ILMN_1376953	0001570458	S	1546	TGTTTGGTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTG					PREDICTED: Rattus norvegicus Cytochrome P450, subfamily IIC6 (Cyp2c6), mRNA.		The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence NAS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_29789272-S	ILMN_68864	TAP1	NM_032055.2	NM_032055.2		24811	75832139	NM_032055.2	Tap1	NP_114444.1	ILMN_1374617	0002690156	S	2385	CACCACATCCTCTTCCTCAAAGAAGGCTCTGTCTGCGAGCAGGGCACCCA	20	-	4790872-4790921	20p12	Rattus norvegicus transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) (Tap1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A heterodimer composed of the subunits TAP1 and TAP2 (transporter associated with antigen presentation). Functions in the transport of antigenic peptides from the cytosol to the lumen of the endoplasmic reticulum [goid 42825] [evidence IPI]	The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of a peptide antigen into, out of, within or between cells. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein [goid 46968] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15197] [evidence IEA]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Catalysis of the reaction: peptide antigen(in) + ATP = peptide antigen(out) + ADP + phosphate [goid 15433] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IPI]; Interacting selectively with the TAP1 subunit of TAP (transporter associated with antigen processing) protein [goid 46978] [evidence IPI]; Interacting selectively with the TAP2 subunit of TAP (transporter associated with antigen processing) protein [goid 46979] [evidence IPI]; Interacting selectively with tapasin, a member of the MHC class I loading complex which bridges the TAP peptide transporter to class I molecules [goid 46980] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]	Cim; MGC124549; Abcb2	Cim; MGC124549; Abcb2
Rattus norvegicus	RefSeq	GI_27707003-S	ILMN_296623	MAGEB5_PREDICTED	XM_001063480.1	XM_001063480.1		302442	109511925	XM_001063480.1	Mageb5_predicted	XP_001063480.1	ILMN_1369268	0003390402	S	838	GGGCAGATACCCAATAGTGATCCTCCATGCTATCAGTTCCAATGGGGTCC				Xq22	PREDICTED: Rattus norvegicus melanoma antigen, family B, 5 (predicted) (Mageb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647891-S	ILMN_65417	LOC500276	XM_575626.1	XM_575626.1		500276	62647891	XM_575626.1	LOC500276	XP_575626.1	ILMN_1373921	0004780184	S	441	GGACCGGTCATGAAACCAGAGAAAAAGTCCCGGAGGGAAAGAAGAAGGCA				4q41	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L13 (LOC500276), mRNA.					
Rattus norvegicus	RefSeq	GI_62654884-S	ILMN_57228	LOC503248	XM_578780.1	XM_578780.1		503248	62654884	XM_578780.1	LOC503248	XP_578780.1	ILMN_1354692	0003840022	S	20	CCAGCAGGGTCCCCAGCGGAGACATGGTGAACACTTGGCATTAAAGATGT					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2) (LOC503248), mRNA.					
Rattus norvegicus	RefSeq	GI_62659134-S	ILMN_48302	LOC498204	XM_573422.1	XM_573422.1		498204	62659134	XM_573422.1	LOC498204	XP_573422.1	ILMN_1352783	0001090138	S	3628	CCACCACCGCTGCACGAGTTCCCTGGCCCAATCTTGAGGTAGATCTTTGC					PREDICTED: Rattus norvegicus similar to LRRGT00008 (LOC498204), mRNA.					
Rattus norvegicus	RefSeq	GI_62652507-S	ILMN_286525	LOC314964	XM_001067475.1	XM_001067475.1		314964	109482252	XM_001067475.1	LOC314964	XP_001067475.1	ILMN_1350792	0000110632	S	4467	TTTGAGCCTAGGTCCTACTGTCTGCCAGTCCTGGTGCGAGTTGTGTGCAC				7q33	PREDICTED: Rattus norvegicus similar to PHD finger protein 20-like 1 isoform 1 (LOC314964), mRNA.					
Rattus norvegicus	RefSeq	GI_40254766-S	ILMN_287873	NR1I3	NM_022941.2	NM_022941.2		65035	40254766	NM_022941.2	Nr1i3	NP_075230.1	ILMN_1364343	0002030707	S	1228	CATCCAGGGACTGTCTGCTATGATGCCGCTGCTTGGGGAGATTTGCAGCT	13	+	87108512-87108561	13q24	Rattus norvegicus nuclear receptor subfamily 1, group I, member 3 (Nr1i3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108525; CAR	MGC108525; CAR
Rattus norvegicus	RefSeq	GI_62643100-S	ILMN_54169	LOC499555	XM_574880.1	XM_574880.1		499555	62643100	XM_574880.1	LOC499555	XP_574880.1	ILMN_1359795	0002470041	S	1118	CAAGTACCATATAAAGGCAGACCTATCAGAATCACACCAGACTTCTCGCC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC499555), mRNA.					
Rattus norvegicus	RefSeq	GI_19424325-S	ILMN_274295	SLC2A13	NM_133611.1	NM_133611.1		171147	19424325	NM_133611.1	Slc2a13	NP_598295.1	ILMN_1374106	0004540673	S	2264	CTGTTGTACCCAGCGACTTCAGTTGGGGTCCCTTTCTCCTTAAACCACAC	7	-	129682960-129683009	7q35	Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 13 (Slc2a13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]	Hmit	Hmit
Rattus norvegicus	RefSeq	GI_62659236-S	ILMN_55302	SLC35F5_PREDICTED	XM_222576.4	XM_222576.4		288993	109497805	XM_222576.4	Slc35f5_predicted	XP_222576.3	ILMN_1369468	0003360167	S	2230	TGTTAGTGTGGCAAGTGTGCTCATGCGAGGTTGGTGGCACTTAGAGGGTG	13	+	38092722-38092771	13q11	PREDICTED: Rattus norvegicus solute carrier family 35, member F5 (predicted) (Slc35f5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659762-S	ILMN_67965	SLAMF8_PREDICTED	XM_222909.3	XM_222909.3		289237	62659762	XM_222909.3	Slamf8_predicted	XP_222909.3	ILMN_1361638	0004200253	S	1399	TGCCCTCAGGAAGCAGTCTGCAAGGCAGAGAGAGACCCGAACAAGGGAAT				13q24	PREDICTED: Rattus norvegicus SLAM family member 8 (predicted) (Slamf8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645275-S	ILMN_50694	LOC502636	XM_578131.1	XM_578131.1		502636	62645275	XM_578131.1	LOC502636	XP_578131.1	ILMN_1368523	0000610600	S	206	TGGTCGGAAAGCTATCATGATTTTTCAAAGGCGCCCCAGAAGCTGCACCC				3q23	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (LOC502636), mRNA.					
Rattus norvegicus	RefSeq	GI_62640395-S	ILMN_70267	LOC499168	XM_579923.1	XM_579923.1		499168	62640395	XM_579923.1	LOC499168	XP_579923.1	ILMN_1363061	0006510026	S	1525	GAGGACTAAGGGCCTCCCCTCTCATTGATGCCAGATAAAGCAAAAGGCAG					PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase, receptor type, F (LOC499168), mRNA.					
Rattus norvegicus	RefSeq	Rn.8661	ILMN_278563	TMEM140	NM_001009709.1	NM_001009709.1		362334	57527559	NM_001009709.1	Tmem140	NP_001009709.1	ILMN_1530390	0002480280	S	1248	TTTATTATGCATTGGGGCTTCAGTATGTATCTTTTCAGTGTGTGTACCAA	4	+	62259677-62259726	4q22	Rattus norvegicus transmembrane protein 140 (Tmem140), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_57527559-S	ILMN_278563	TMEM140	NM_001009709.1	NM_001009709.1		362334	57527559	NM_001009709.1	Tmem140	NP_001009709.1	ILMN_1372260	0003390441	S	1179	ACTAGTCACCACAAACACACAGCGCGTCCCCTCACCTTACCCAGACTGGA	4	+	62259608-62259657	4q22	Rattus norvegicus transmembrane protein 140 (Tmem140), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62657149-S	ILMN_69091	CCDC43	XM_340915.3	XM_340915.3		360637	109489119	XM_340915.3	Ccdc43	XP_340916.3	ILMN_1349208	0003360341	S	478	GCGGATGTGACGGACGAAGAGGATGAAGCAGATGAGAAAGCTGATCCCGG	10	-	91805071-91805098:91806369-91806390	10q32.1	PREDICTED: Rattus norvegicus coiled-coil domain containing 43 (Ccdc43), mRNA.					
Rattus norvegicus	RefSeq	GI_62651366-S	ILMN_60080	LOC500742	XM_576121.1	XM_576121.1		500742	62651366	XM_576121.1	LOC500742	XP_576121.1	ILMN_1374784	0004810541	S	43	AAGGTGCCCAATGTGAGGTGAAGCTGGTAGAGACTGGGAGAGGTTTGGTG					PREDICTED: Rattus norvegicus similar to anti-poly(dC) monoclonal antibody heavy chain (LOC500742), mRNA.					
Rattus norvegicus	RefSeq	GI_47577852-S	ILMN_292818	OLR1197	NM_001001120.1	NM_001001120.1		406021	47577852	NM_001001120.1	Olr1197	NP_001001120.1	ILMN_1363847	0006200064	S	582	TGAGCTGGTAGTCTTCATTGTGGTGGCCATTGATATTGCTGTGCCCATTG	8	+	39076992-39077041	8q21	Rattus norvegicus olfactory receptor 1197 (Olr1197), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1197	Olr1197
Rattus norvegicus	RefSeq	GI_62650167-S	ILMN_67410	LOC362680	XM_347073.2	XM_347073.2		362680	62650167	XM_347073.2	LOC362680	XP_347074.2	ILMN_1367481	0006650040	S	585	ACAGCAGCCTGGTCTCCACAGTGAGCAGGACACAAAGGCAGGCTCTCAGA					PREDICTED: Rattus norvegicus hypothetical LOC362680 (LOC362680), mRNA.					
Rattus norvegicus	RefSeq	GI_62660199-S	ILMN_53772	CCNG2_PREDICTED	XM_223270.4	XM_223270.4		29157	109499498	XM_223270.4	Ccng2_predicted	XP_223270.2	ILMN_1368551	0000630722	S	943	GCGCAGAGCCTCCACAACAGCTACTACAGTGTTCCCGAGCTGCCCACCAT	14	-	16340888-16340937	14p22	PREDICTED: Rattus norvegicus cyclin G2 (predicted) (Ccng2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55926218-S	ILMN_265404	DDX39	NM_053563.2	NM_053563.2		89827	55926218	NM_053563.2	Ddx39	NP_446015.2	ILMN_1367954	0005130037	S	1558	ATCTCCACATACATTGAGCAGAGCCGGTAACCATGTGTGTAGCCAGGCAC	19	-	26109203-26109223:26109224-26109240:26109330-26109341	19q11	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 (Ddx39), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence IEA]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ddxl; MGC105369	Ddxl; MGC105369
Rattus norvegicus	RefSeq	GI_62718616-S	ILMN_49267	LOC501438	XM_576847.1	XM_576847.1		501438	62718616	XM_576847.1	LOC501438	XP_576847.1	ILMN_1368265	0002570358	S	1129	GGAGTGACAAATGATATTGGCAAAAGCGCCTTGGCTGCAGTGCGGCATGG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501438), mRNA.					
Rattus norvegicus	RefSeq	GI_62646075-A	ILMN_271595	XKR7	NM_001012092.1	NM_001012092.1		311549	58865753	NM_001012092.1	Xkr7	NP_001012092.1	ILMN_1376506	0006650064	S	2368	TGGGATGAGTTGGGGGGATCTCTGGACAGGGTTGGTGCAGTTCCTGTAGG	3	+	143400172-143400221	3q41	Rattus norvegicus X Kell blood group precursor related family member 7 homolog (Xkr7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62641520-S	ILMN_286600	LOC499279	NM_001024288.1	NM_001024288.1		499279	66730344	NM_001024288.1	LOC499279	NP_001019459.1	ILMN_1358195	0000130128	S	578	GCTGTTGACACAAAGGTGGTCTCTCCACACCCTCGCACAGGTACCCCAAG	1	-	193083937-193083986	1q41	Rattus norvegicus hypothetical gene supported by BC079265 (LOC499279), mRNA.					
Rattus norvegicus	RefSeq	GI_66730344	ILMN_286600	LOC499279	NM_001024288.1	NM_001024288.1		499279	66730344	NM_001024288.1	LOC499279	NP_001019459.1	ILMN_1530476	0001230400	S	700	ACCCCCTAATTGCTGAAATGCTTTTGTGACTTTTAAAGGTTGAAAATATT	1	-	193083815-193083849:193083850-193083864	1q41	Rattus norvegicus hypothetical gene supported by BC079265 (LOC499279), mRNA.					
Rattus norvegicus	RefSeq	GI_62643787	ILMN_296351	DCST1_PREDICTED	XM_001074533.1	XM_001074533.1		295246	109467024	XM_001074533.1	Dcst1_predicted	XP_001074533.1	ILMN_1650745	0001940047	S	2145	CGAGGAGCTCTCTTCATCCGCCCACAGCGACAGCAACGACGACACTGTAT				2q34	PREDICTED: Rattus norvegicus DC-STAMP domain containing 1 (predicted) (Dcst1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641766-S	ILMN_57283	LOC499304	XM_579946.1	XM_579946.1		499304	62641766	XM_579946.1	LOC499304	XP_579946.1	ILMN_1355884	0001500164	S	191	CCTAGCTTCCTCCAACGAACCGCACTGTTTCCTGGGCTATCTTCACCATG					PREDICTED: Rattus norvegicus LOC499304 (LOC499304), mRNA.					
Rattus norvegicus	RefSeq	GI_57114297-S	ILMN_285166	YOD1	NM_001008889.1	NM_001008889.1		363982	57114297	NM_001008889.1	Yod1	NP_001008889.1	ILMN_1353222	0005670050	S	825	CATGCTGTGTCAGAAGGGCCTAACCGGACAAGCTGAAGCAAGGGACCATG	13	+	43654904-43654953	13q13	Rattus norvegicus YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae) (Yod1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents, and compounds derived from amino acids, as carried out by individual cells [goid 6519] [evidence ISS]	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: X-CoA + H2O = X + CoA; X may be any group [goid 16289] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124915	MGC124915
Rattus norvegicus	RefSeq	GI_62718360-S	ILMN_55537	LOC501379	XM_576792.1	XM_576792.1		501379	62718360	XM_576792.1	LOC501379	XP_576792.1	ILMN_1371413	0001500373	S	582	CATGGGCCAGACCCAGCATCATCTGGTCTCAGAAAGTGCAAGAGAGCTGG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501379), mRNA.					
Rattus norvegicus	RefSeq	GI_62652590-S	ILMN_53574	JRK_PREDICTED	XM_235416.4	XM_235416.4		315073	109480879	XM_235416.4	Jrk_predicted	XP_235416.2	ILMN_1363619	0000610066	S	1644	CAGAGAAAGATGCTGGTGAGGATGAGGAGACAGTTTGGGAGCAGGCAGCC	7	-	112820829-112820878	7q34	PREDICTED: Rattus norvegicus jerky homolog (mouse) (predicted) (Jrk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15100163-S	ILMN_263729	AKT1	NM_033230.1	NM_033230.1		24185	15100163	NM_033230.1	Akt1	NP_150233.1	ILMN_1353102	0005720152	S	1393	CCGCCTGATCAAGATGACAGCATGGAGTGTGTGGACAGTGAACGGAGGCC	6	-	137640648-137640686:137641129-137641139	6q32	Rattus norvegicus v-akt murine thymoma viral oncogene homolog 1 (Akt1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence EXP]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence IEA]; The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IMP]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; The process of apoptosis in activated T cells [goid 6924] [evidence IEA]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IMP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence ISS]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IEA]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 32436] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface [goid 34405] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B, which occurs as a result of a single trigger reaction or compound [goid 43491] [evidence ISS]; A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B, which occurs as a result of a single trigger reaction or compound [goid 43491] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that reduces cell size [goid 45792] [evidence IDA]; Any process that modulates the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45884] [evidence ISS]; Any process that modulates the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45884] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46329] [evidence IDA]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; Any process that activates or increases the activity of the enzyme nitric-oxide synthase [goid 51000] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence EXP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Modulates the activity of nitric oxide synthase [goid 30235] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Akt	Akt
Rattus norvegicus	RefSeq	GI_62660863-S	ILMN_271309	LOC682368	XM_001061225.1	XM_001061225.1		682368	109501094	XM_001061225.1	LOC682368	XP_001061225.1	ILMN_1357927	0005080592	S	416	CCTTCAAAGCCAGAAGCCTATGGTGGTCAAGAGGAAACAGACCCGCCAAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L28 (LOC682368), mRNA.					
Rattus norvegicus	RefSeq	GI_21070933-S	ILMN_282361	CALCOCO1	NM_139190.1	NM_139190.1		246047	21070933	NM_139190.1	Calcoco1	NP_631929.1	ILMN_1356800	0005890722	S	2785	GTATTTGTGCCTTCTGTGAGGGATAGGGGGACAAGGGATCCCAGGTGTCC	7	-	141456361-141456410	7q36	Rattus norvegicus calcium binding and coiled coil domain 1 (Calcoco1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Any series of molecular signals generated as a consequence of a steroid hormone binding to its receptor [goid 30518] [evidence ISS]; Any series of molecular signals generated as a consequence of a steroid hormone binding to its receptor [goid 30518] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93160; KIAA1536	MGC93160; KIAA1536
Rattus norvegicus	RefSeq	GI_62661828-S	ILMN_279352	NDFIP2_PREDICTED	XM_001077197.1	XM_001077197.1		361089	109502919	XM_001077197.1	Ndfip2_predicted	XP_001077197.1	ILMN_1361407	0001230161	S	1107	CGCAGAAGCAGATGTAGTGAGGGGTGGAGCGTCGGAATTAAATGACAGGG				15q22	PREDICTED: Rattus norvegicus Nedd4 family interacting protein 2 (predicted) (Ndfip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666774-S	ILMN_272731	RGD1562460_PREDICTED	XR_008510.1	XR_008510.1		367775	109511671	XR_008510.1	RGD1562460_predicted		ILMN_1365143	0004760215	S	409	GAGATTCCGGATATCCCTGAGCCACCTTCCAACTCTGGACACAAATCTCA				Xq21	PREDICTED: Rattus norvegicus similar to Expressed sequence AI645720 (predicted) (RGD1562460_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506448-S	ILMN_299543	CAR4	NM_019174.1	NM_019174.1		29242	9506448	NM_019174.1	Car4	NP_062047.1	ILMN_1354041	0000430725	S	869	ACTGGGAAACCGCCAGGTGTTCAGGTCTCATGCCTCAGGACGACTGCTGT	10	+	73237372-73237421	10q26	Rattus norvegicus carbonic anhydrase 4 (Car4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEP]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48513] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Car4	Car4
Rattus norvegicus	RefSeq	GI_6981453-S	ILMN_56697	RAB4A	NM_013019.2	NM_013019.2		25532	77404179	NM_013019.2	Rab4a	NP_037151.2	ILMN_1370636	0002940563	S	717	TTGAGACAGCTACGGTCACCCCGACGTACACAGGCTCCAAGTGCACAGGA	19	+	54017795-54017844	19q12	Rattus norvegicus RAB4A, member RAS oncogene family (Rab4a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]	Rab4	Rab4
Rattus norvegicus	RefSeq	GI_34854706	ILMN_293373	NALP9B_PREDICTED	XM_218248.3	XM_218248.3		292577	62639013	XM_218248.3	Nalp9b_predicted	XP_218248.3	ILMN_1650030	0003450161	S	1	ATGGTGGACACGTCTGGATATGGCTTGCTGAAGCATCTGCGAAAACTGAG	1	-	67067892-67067941	1q12	PREDICTED: Rattus norvegicus NACHT, LRR and PYD containing protein 9b (predicted) (Nalp9b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866220-S	ILMN_67333	RGD1562754_PREDICTED	XM_345837.2	XM_345837.2		366925	109480735	XM_345837.2	RGD1562754_predicted	XP_345838.2	ILMN_1365865	0005340398	S	11	CACCAGAGAATTTGAACCGAAAGCTGGTGACACAGGACAAGATCATCTGC	7	-	81194280-81194304:81194779-81194803	7q31	PREDICTED: Rattus norvegicus similar to 1810049O03Rik protein (predicted) (RGD1562754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653983-S	ILMN_57226	LOC503211	XM_578736.1	XM_578736.1		503211	62653983	XM_578736.1	LOC503211	XP_578736.1	ILMN_1371752	0004760286	S	920	TAAGCAAGATGTGCTCCCTCATCGGGCCACCTTGAGAGGGGAAGCTCGAG				7q22	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC503211), mRNA.					
Rattus norvegicus	RefSeq	GI_62648112-S	ILMN_52792	LOC312683	XM_232253.3	XM_232253.3		312683	62648112	XM_232253.3	LOC312683	XP_232253.3	ILMN_1354262	0002060019	S	10015	GGTTAAAGGTTGAGACTAGCCCCTCTTCATGCTTGCTGGGACCAGAGGAG					PREDICTED: Rattus norvegicus similar to KIAA0819 protein (predicted) (LOC312683), mRNA.					
Rattus norvegicus	RefSeq	GI_62662311-S	ILMN_61822	LOC502052	XM_577485.1	XM_577485.1		502052	62662311	XM_577485.1	LOC502052	XP_577485.1	ILMN_1359447	0001740601	S	173	CCAGATAACCACTCTGTTTTCTCTTGCTGAAAGGGAACCCTTTGCTGTCC				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502052), mRNA.					
Rattus norvegicus	RefSeq	GI_47576966-S	ILMN_265216	OLR614	NM_001000337.1	NM_001000337.1		295839	47576966	NM_001000337.1	Olr614	NP_001000337.1	ILMN_1354832	0005290575	S	900	GGACACAGTGAAGAGGCTCATCGGCTCAAAACTGCACCGTCATTCAATGT	3	-	71985006-71985055	3q24	Rattus norvegicus olfactory receptor 614 (Olr614), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-71882327-71881377_ORF; Olr614	ratchr3-71882327-71881377_ORF; Olr614
Rattus norvegicus	RefSeq	GI_62665759-S	ILMN_64759	LOC502413	XM_577894.1	XM_577894.1		502413	62665759	XM_577894.1	LOC502413	XP_577894.1	ILMN_1370107	0005360025	S	67	GCAGCTCTTGCTGGCTCTGTTATGATACTGGTCCACCCTACTACCAAGGA					PREDICTED: Rattus norvegicus similar to envelope protein (LOC502413), mRNA.					
Rattus norvegicus	RefSeq	GI_62078700-S	ILMN_269734	LOC305076	NM_001013986.2	NM_001013986.2		305076	75677336	NM_001013986.2	LOC305076	NP_001014008.1	ILMN_1359162	0006940685	S	2276	ATTCCAAGTATGATGCCCAGAGGCTGGCTGCTGTGGTTGGTGTGGAGCGG	13	-	108945429-108945478	13q27	Rattus norvegicus similar to hypothetical protein MGC29875; novel putative protein similar to YIL091C yeast hypothetical 84 kD protein from SGA1-KTR7 (LOC305076), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62664313-S	ILMN_60840	SPRY4_PREDICTED	XM_225969.3	XM_225969.3		291610	109506525	XM_225969.3	Spry4_predicted	XP_225969.1	ILMN_1350886	0004670128	S	2427	TTCTCACACGGTGCTAAAGGACTCAGAAAGCGCGCAGCACGTCCAGTGGG	18	-	31534961-31535010	18p11	PREDICTED: Rattus norvegicus sprouty homolog 4 (Drosophila) (predicted) (Spry4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657756-S	ILMN_294740	RGD1564179_PREDICTED	XR_009536.1	XR_009536.1		363757	109494184	XR_009536.1	RGD1564179_predicted		ILMN_1351985	0006770576	S	1031	GGGAAACCAAGTCACTCATGGATGAGGAAGTGAAAGGCAGTTGTGGGGGT				11q12	PREDICTED: Rattus norvegicus similar to pyruvate kinase 3 (predicted) (RGD1564179_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923971-S	ILMN_266922	PSMC1	NM_057123.1	NM_057123.1		117263	16923971	NM_057123.1	Psmc1	NP_476464.1	ILMN_1355840	0004590390	S	1440	AGCCCGTGTCGTGGAGGACGCTGTGTGGTCTGTCTCCAATCTGTTGTTGG	6	+	124393233-124393282	6q32	Rattus norvegicus protease (prosome, macropain) 26S subunit, ATPase 1 (Psmc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence TAS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	s4	s4
Rattus norvegicus	RefSeq	GI_62651150-S	ILMN_263804	RGD1307429_PREDICTED	XM_001065209.1	XM_001065209.1		362770	109479860	XM_001065209.1	RGD1307429_predicted	XP_001065209.1	ILMN_1370332	0000870577	S	6181	GACTTCAGTCAAGGGAGCAGCTCAAAGAGCACACCAGCATCCCCAGAGCC				6q32	PREDICTED: Rattus norvegicus similar to KIAA1509 protein (predicted) (RGD1307429_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656081-S	ILMN_70223	LOC360527	XM_340800.2	XM_340800.2		360527	62656081	XM_340800.2	LOC360527	XP_340801.2	ILMN_1372213	0005890288	S	3512	GCTGGCTGAGTACCTGAGGGGACAGATGCGTGTTCATGTCAAGGAGCTAG					PREDICTED: Rattus norvegicus similar to mKIAA1961 protein (predicted) (LOC360527), mRNA.					
Rattus norvegicus	RefSeq	GI_62667624-S	ILMN_50663	LOC503490	XM_579047.1	XM_579047.1		503490	62667624	XM_579047.1	LOC503490	XP_579047.1	ILMN_1364003	0002510706	S	75	GCTACATCCTCACCAAAGCTGCAGCAGGTTACCAGGAACCCTCCAATGAG					PREDICTED: Rattus norvegicus similar to CLM7 (LOC503490), mRNA.					
Rattus norvegicus	RefSeq	GI_62640983-A	ILMN_281946	HBE1	NM_001008890.1	NM_001008890.1		293267	57114339	NM_001008890.1	Hbe1	NP_001008890.1	ILMN_1376929	0003140451	S	40	GGCCTATGGAGTAAAGTGAATGTTGAGGAGGTTGGTGGTGAAGCCTTGGG	1	-	161652613-161652662	1q32	Rattus norvegicus hemoglobin, epsilon 1 (Hbe1), mRNA.	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665846-S	ILMN_275472	PRMT2	NM_001025144.1	NM_001025144.1		499420	68341938	NM_001025144.1	Prmt2	NP_001020315.1	ILMN_1350340	0003710050	S	1733	GACTGTGATGTCCACACCTTGTGTCAGTGGTGTCCTTGATGCCCTCGACC	20	+	12816926-12816975	20p12	Rattus norvegicus protein arginine methyltransferase 2 (Prmt2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Prmt2	Prmt2
Rattus norvegicus	RefSeq	GI_62666263-S	ILMN_267021	LOC499465	NM_001025038.1	NM_001025038.1		499465	68163512	NM_001025038.1	LOC499465	NP_001020209.1	ILMN_1372931	0001580372	S	907	CCTGGTTTTGAGGTCAGTGGCAGCGAGAGCAGCGTGGTGCGGTTTTGGTA	20	+	44940192-44940241	20q12	Rattus norvegicus hypothetical protein LOC499465 (LOC499465), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_25282422-S	ILMN_267016	PPP1R14B	NM_172045.1	NM_172045.1		259225	25282422	NM_172045.1	Ppp1r14b	NP_742042.1	ILMN_1361787	0002340692	S	671	GCGGCGCAGGCCCTTTGAAAATAAAGCTAGGATACAGCCTTTGGAGCAGC	1	+	209650716-209650765	1q43	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14B (Ppp1r14b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Modulation of the activity of the enzyme protein phosphatase type 1 [goid 8599] [evidence IDA]; Stops, prevents or reduces the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule [goid 19212] [evidence IDA]	PHI-1	PHI-1
Rattus norvegicus	RefSeq	GI_34866487	ILMN_68546	RGD1561402_PREDICTED	XM_343239.2	XM_343239.2		362910	109480770	XM_343239.2	RGD1561402_predicted	XP_343240.1	ILMN_1649756	0000770427	S	675	GAGTGTGACCTGTTCCCCAGAGAAATACTGACTCATGGCCCTGCCAGAAG	7	-	89785363-89785412	7q31	PREDICTED: Rattus norvegicus similar to sterile alpha motif domain containing 12 (predicted) (RGD1561402_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648967-S	ILMN_274744	COL15A1	XM_001066530.1	XM_001066530.1		298069	109476382	XM_001066530.1	Col15a1	XP_001066530.1	ILMN_1372740	0000610138	S	4747	GCTTGGCGATACCACGCACGGTTCCATACAGCCAGAGAAAGAGAGCTGCT				5q22	PREDICTED: Rattus norvegicus procollagen, type XV (Col15a1), mRNA.	A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654790-S	ILMN_298245	OGFRL1	NM_001025708.1	NM_001025708.1		316290	71043627	NM_001025708.1	Ogfrl1	NP_001020879.1	ILMN_1368121	0000430072	S	1302	GGAGGACGACAATGCTGCCGACCAATCAGAGTCTCCACCCAAGAAAACCG	9	-	22234354-22234403	9q13	Rattus norvegicus opioid growth factor receptor-like 1 (Ogfrl1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC116379	MGC116379
Rattus norvegicus	RefSeq	GI_52138620-S	ILMN_279946	SPATA2	NM_053675.2	NM_053675.2		114210	52138620	NM_053675.2	Spata2	NP_446127.3	ILMN_1355928	0002350403	S	2202	GGGGTCACTTTCAAATCCTCATCAGGAGTGGTGAGCTAGAGGCCTGCTGG	3	-	158632562-158632611	3q42	Rattus norvegicus spermatogenesis associated 2 (Spata2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			MGC93291	MGC93291
Rattus norvegicus	RefSeq	GI_6981615-S	ILMN_269187	SYCP1	NM_012810.1	NM_012810.1		25276	6981615	NM_012810.1	Sycp1	NP_036942.1	ILMN_1353098	0003130711	S	2660	GTGGCAAATCCAAAGATAACAGAGATAGTCTGCGGGCATCTGCCAAAAGC	2	-	198009417-198009466	2q34	Rattus norvegicus synaptonemal complex protein 1 (Sycp1), mRNA.	A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence ISS]; A structural unit of the synaptonemal complex found between the lateral elements [goid 801] [evidence IEA]; A structural unit of the synaptonemal complex found between the lateral elements [goid 801] [evidence ISS]; A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them [goid 802] [evidence IEA]; A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them [goid 802] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The cell cycle process whereby the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination [goid 7130] [evidence IEA]; The cell cycle process whereby the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination [goid 7130] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	SCP1	SCP1
Rattus norvegicus	RefSeq	GI_62661852-S	ILMN_64566	LOC364312	XM_344337.2	XM_344337.2		364312	62661852	XM_344337.2	LOC364312	XP_344338.2	ILMN_1353372	0003450446	S	354	AGCCTGTACACAAACCCTCAGCTGGCAACCAGCATGGCCCAGAAGGTAGT					PREDICTED: Rattus norvegicus similar to T cell receptor V alpha 2 chain subunit (LOC364312), mRNA.					
Rattus norvegicus	RefSeq	GI_34858064-S	ILMN_264437	ANP32E	NM_001013200.1	NM_001013200.1		361999	61557268	NM_001013200.1	Anp32e	NP_001013218.1	ILMN_2040226	0001690653	S	844	GGATGAAGCTGGCTCAGAAGTAGGAGAGGGAGAAGAGGAGGTGGGCCTCT	2	+	190723106-190723155	2q34	Rattus norvegicus acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (Anp32e), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stops, prevents or reduces the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule [goid 19212] [evidence ISS]; Stops, prevents or reduces the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule [goid 19212] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654251-S	ILMN_47748	CISH	XM_343472.2	XM_343472.2		83681	62654251	XM_343472.2	Cish	XP_343473.2	ILMN_1359708	0006940253	S	1054	GAACAAAGCAGGTGGAGGAGGGGTTATCATACAACTCTGAGGCCAGTGCC				8q32	PREDICTED: Rattus norvegicus cytokine inducible SH2-containing protein (Cish), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662958-S	ILMN_292232	RGD1307041_PREDICTED	XR_009021.1	XR_009021.1		361182	109504477	XR_009021.1	RGD1307041_predicted		ILMN_1364197	0004060400	S	1386	CCTGCTGCTGGCCTGTGGTGCCTGTGAACTTCTGGGAGGGAAACAGCTAT				16q12.5	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11305 (predicted) (RGD1307041_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655824-S	ILMN_290735	LOC681591	XM_001054845.1	XM_001054845.1		681591	109490308	XM_001054845.1	LOC681591	XP_001054845.1	ILMN_1369668	0005700524	S	1225	GCGCAAGAGCGTGAAGCCCCAGTCAGCCTCAGTTCACAACTTTCAGGAGG					PREDICTED: Rattus norvegicus similar to Deoxyribonuclease I-like 2 precursor (DNase I-like 2) (LOC681591), mRNA.					
Rattus norvegicus	RefSeq	GI_62639356-S	ILMN_51045	RGD1308901_PREDICTED	XM_214898.3	XM_214898.3		292787	109458551	XM_214898.3	RGD1308901_predicted	XP_214898.1	ILMN_1373849	0001850161	S	794	ATCGCAACATGCAACGCTGGAAACGCATACGCCAGAGGTGGAAGGAGGCG	1	-	85601367-85601380:85601458-85601493	1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810054G18 (predicted) (RGD1308901_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666456-S	ILMN_269016	RGD1559928_PREDICTED	XM_001062576.1	XM_001062576.1		298318	109512505	XM_001062576.1	RGD1559928_predicted	XP_001062576.1	ILMN_1372920	0000110504	S	811	CCAAGGGGTCCTGGGGCTCTGGAACGGACTAACGGCTAACTTACTAAAGG				Xq12	PREDICTED: Rattus norvegicus similar to mitochondrial solute carrier protein (predicted) (RGD1559928_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527963-S	ILMN_280979	LOC290549	NM_207589.2	NM_207589.2		290549	57527963	NM_207589.2	LOC290549	NP_997472.1	ILMN_1350707	0006940273	S	345	GACATACACGCCTAGAAGGGAACCATCAAGAGGTGAGGAGCGGCTCATGA	16	+	5314395-5314444	16p16	Rattus norvegicus heat shock protein (LOC290549), mRNA.					
Rattus norvegicus	RefSeq	GI_62639122-S	ILMN_61771	LOC499091	XM_574382.1	XM_574382.1		499091	62639122	XM_574382.1	LOC499091	XP_574382.1	ILMN_1368971	0003520671	S	1805	AGGAGAGGAACCCTACCCGGTCAGCAGTGTGGGAAGCGGGAGGACTTCAG					PREDICTED: Rattus norvegicus similar to zinc finger protein 108 (LOC499091), mRNA.					
Rattus norvegicus	RefSeq	GI_42476136-S	ILMN_296446	PLAT	NM_013151.2	NM_013151.2		25692	42476136	NM_013151.2	Plat	NP_037283.2	ILMN_1358127	0000430091	S	2075	GACCAAAGTCCACCCTTCCTGGACCACTATTTTGTACACTGAACCACAAG	16	-	73711677-73711726	16q12.5	Rattus norvegicus plasminogen activator, tissue (Plat), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The orderly movement of smooth muscle cells from one site to another, often during the development of a multicellular organism [goid 14909] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IMP]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IEA]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEP]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	PATISS; tPA	PATISS; tPA
Rattus norvegicus	RefSeq	GI_62661579-I	ILMN_50297	CDADC1_PREDICTED	XM_573797.1	XM_573797.1		361052	62661579	XM_573797.1	Cdadc1_predicted	XP_573797.1	ILMN_1375621	0002230162	S	1668	AGTCCGGGGTCTCAGGAGGAGAAAGACACGCCCACAGGTGAATGCAGAGT				15p12	PREDICTED: Rattus norvegicus cytidine and dCMP deaminase domain containing 1 (predicted) (Cdadc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644872-S	ILMN_53045	LOC502610	XM_578098.1	XM_578098.1		502610	62644872	XM_578098.1	LOC502610	XP_578098.1	ILMN_2039120	0002320162	S	712	GTCGCGCCGCTGGGACTCTGCTGGTCTCCCGAAGTTCAGACGTGGGCGGC					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC502610), mRNA.					
Rattus norvegicus	RefSeq	GI_62654656-S	ILMN_68646	TREM2_PREDICTED	XM_217335.4	XM_217335.4		301227	109485716	XM_217335.4	Trem2_predicted	XP_217335.3	ILMN_1348883	0004730402	S	820	CCGGGAGCAGGAATACTGGTGTGCTGCATCTGCGTTGAGTGGGGAAGACA	9	-	8059078-8059127	9q12	PREDICTED: Rattus norvegicus triggering receptor expressed on myeloid cells 2 (predicted) (Trem2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659656-S	ILMN_61542	LOC501859	XM_580232.1	XM_580232.1		501859	62659656	XM_580232.1	LOC501859	XP_580232.1	ILMN_1357273	0006380451	S	627	CAATCATCTACAACCAGCGCGGTCACTCTCGAGGTTGCTCTCGACACTGG					PREDICTED: Rattus norvegicus LOC501859 (LOC501859), mRNA.					
Rattus norvegicus	RefSeq	GI_40786460-S	ILMN_267144	NAPEPLD	NM_199381.1	NM_199381.1		296757	40786460	NM_199381.1	Napepld	NP_955413.1	ILMN_1373161	0006350102	S	895	GGTCCTTTTGACCTCGCGGCTATTCCCATTGGAGCTTATGAGCCAAGGTG	4	+	8832485-8832531:8840439-8840441	4q11	Rattus norvegicus N-acyl phosphatidylethanolamine phospholipase D (Napepld), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IEA]	Catalysis of the hydrolysis of a glycerophospholipid [goid 4620] [evidence IMP]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644387-S	ILMN_270469	CYP2U1	NM_001024779.1	NM_001024779.1		310848	67078465	NM_001024779.1	Cyp2u1	NP_001019950.1	ILMN_1373501	0000990414	S	1549	GAGCCTGATGCAGAGTTTCACCTTTGCTTTACCTGAGGGCTCCGAGAAGC	2	-	228773533-228773582	2q43	Rattus norvegicus cytochrome P450, family 2, subfamily u, polypeptide 1 (Cyp2u1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9507230-S	ILMN_266627	UCP2	NM_019354.1	NM_019354.1		54315	9507230	NM_019354.1	Ucp2	NP_062227.1	ILMN_1349048	0004570142	S	1463	TGACCCCGGACCCTGCACCCTCAGTCCTGCTAACAGTTAAGCCCAAATCT	1	+	157928411-157928460	1q32	Rattus norvegicus uncoupling protein 2 (mitochondrial, proton carrier) (Ucp2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IPI]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IDA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605761-S	ILMN_268903	AKR1CL2	NM_001008342.1	NM_001008342.1		307091	56605761	NM_001008342.1	Akr1cl2	NP_001008343.1	ILMN_1355128	0007000148	S	1071	GGCCACAGCAACAGACGCAGCCACAGCCAAGAATGACAACAGAGTCGGAA	17	+	77025549-77025598	17q12.3	Rattus norvegicus aldo-keto reductase family 1, member C-like 2 (Akr1cl2), mRNA.			Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC105536	MGC105536
Rattus norvegicus	RefSeq	GI_62648858-S	ILMN_298920	RGD1560431_PREDICTED	XR_007544.1	XR_007544.1		366323	109476185	XR_007544.1	RGD1560431_predicted		ILMN_1366104	0003060390	S	1034	GTCCCCTCTAATGCAGACTTTAAGACACAGAAGAAAGCTGCGTGGGCTGT				5q13	PREDICTED: Rattus norvegicus similar to Karyopherin (importin) alpha 2 (predicted) (RGD1560431_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653248-S	ILMN_66234	LOC500947	XM_576358.1	XM_576358.1		500947	62653248	XM_576358.1	LOC500947	XP_576358.1	ILMN_1365100	0005390048	S	1454	AGCAAAGGTTAAAATGCCCTGGGACGGGGCTAGAGAGAAGGCTCAACACC				8q12	PREDICTED: Rattus norvegicus hypothetical gene supported by BC088439 (LOC500947), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62646384-S	ILMN_277633	PRKCBP1	XM_001071994.1	XM_001071994.1		296374	109471340	XM_001071994.1	Prkcbp1	XP_001071994.1	ILMN_1363312	0005570112	S	3683	TACCATTCCCGGAGCAGCAAGGCGGGTTTGTGGAGCAGCAGCGAGGAAAA				3q42	PREDICTED: Rattus norvegicus protein kinase C binding protein 1 (Prkcbp1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666587-S	ILMN_263384	RBM3	XM_001063211.1	XM_001063211.1		114488	109511572	XM_001063211.1	Rbm3	XP_001063211.1	ILMN_1353336	0005570017	S	875	TTGAGGCACTCAGGATTATTGTTGCTGGCCAAGAGAAAAAAGTGGCCAGG				Xq13	PREDICTED: Rattus norvegicus RNA binding motif protein 3 (Rbm3), mRNA.		The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein [goid 35196] [evidence IEA]; Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein [goid 35196] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any part of the larger ribosomal subunit [goid 43023] [evidence IEA]; Interacting selectively with any part of the larger ribosomal subunit [goid 43023] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652118-S	ILMN_52886	PTPRB_PREDICTED	XM_235156.4	XM_235156.4		314843	109480531	XM_235156.4	Ptprb_predicted	XP_235156.4	ILMN_1362032	0000580025	S	6139	GAGACGTCCTCAGAGCAAGGAAACTGCGGAACGAACAAGAAAACCCCCTG	7	+	55710955-55711004	7q22	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, B (predicted) (Ptprb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661568-S	ILMN_272245	RGD1563302_PREDICTED	XM_001062244.1	XM_001062244.1		361049	109502514	XM_001062244.1	RGD1563302_predicted	XP_001062244.1	ILMN_1349399	0002570082	S	392	GAAAGGTAGAGGCCTTCAGCCAGTCAGGGTACCAGGGAAATCAGAGCCAG				15p12	PREDICTED: Rattus norvegicus RGD1563302 (predicted) (RGD1563302_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453397-S	ILMN_69475	ARNTL	NM_024362.2	NM_024362.2		29657	71896599	NM_024362.2	Arntl	NP_077338.2	ILMN_1351776	0002360500	S	2401	AGCCTCTTGGAAGCAGATGCGGGGCTGGGTGGTCCCGTTGACTTTAGTGA	1	+	171161850-171161899	1q34	Rattus norvegicus aryl hydrocarbon receptor nuclear translocator-like (Arntl), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence ISS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an aryl hydrocarbon receptor [goid 17162] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665344-S	ILMN_67189	COTL1_PREDICTED	XM_341700.3	XM_341700.3		361422	109508126	XM_341700.3	Cotl1_predicted	XP_341701.1	ILMN_1358946	0001580685	S	1292	GTCTGAGTCCGGCTGTGGTGAGAGTTTCAGGGTCAACCTCAGGGCCTCAA	19	-	50096915-50096964	19q12	PREDICTED: Rattus norvegicus coactosin-like 1 (Dictyostelium) (predicted) (Cotl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663819-S	ILMN_47770	LOC502126	XM_577574.1	XM_577574.1		502126	62663819	XM_577574.1	LOC502126	XP_577574.1	ILMN_2039886	0000610255	S	486	ACAACAAGGAGGACTCTGTGCAGCACCCAGAGAAGAGTGCTGCTTCTACG					PREDICTED: Rattus norvegicus similar to envelope protein (LOC502126), mRNA.					
Rattus norvegicus	RefSeq	GI_9507042-S	ILMN_302373	RGS12	NM_019339.1	NM_019339.1		54292	9507042	NM_019339.1	Rgs12	NP_062212.1	ILMN_1358689	0004280731	S	4978	CATGCTGCCTGTTGTTCCTGTCTAGGCCTTGGCTGTGATATGCAGCAGGC	14	-	81363814-81363863	14q21	Rattus norvegicus regulator of G-protein signaling 12 (Rgs12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45744] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IDA];  [goid 5057] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164030-S	ILMN_275151	MGC72567	NM_001009533.1	NM_001009533.1		494320	57164030	NM_001009533.1	MGC72567	NP_001009533.1	ILMN_1357928	0001940673	S	3163	TTACTAAGCCTGGCAGAGGGAAATGGGTAGAGGAGGGAGGAGGGGGGTTG	1	+	77337698-77337747	1q21	Rattus norvegicus similar to coiled-coil domain containing 8 (MGC72567), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47777719-S	ILMN_296391	OLR555	NM_001001377.1	NM_001001377.1		295798	47777719	NM_001001377.1	Olr555	NP_001001377.1	ILMN_1356053	0003060451	S	843	GCATGAGGGGACAGACAAACTTCTCTCTCTGTTTTACACCATTTTGACAC	3	+	70913067-70913116	3q24	Rattus norvegicus olfactory receptor 555 (Olr555), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr555	Olr555
Rattus norvegicus	RefSeq	GI_52138602-S	ILMN_292580	CYP4F1	NM_019623.2	NM_019623.2		56266	52138602	NM_019623.2	Cyp4f1	NP_062569.2	ILMN_1372735	0002630131	S	1769	TGTCACCCATACCAGAATCTTACGGAGGGCCAGCAGGGGGCGCTGTGAAT	7	-	13589936-13589985	7q11	Rattus norvegicus cytochrome P450, family 4, subfamily f, polypeptide 1 (Cyp4f1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp4f2; MGC93476; Cyp4f14; Cyp4f1	Cyp4f2; MGC93476; Cyp4f14; Cyp4f1
Rattus norvegicus	RefSeq	GI_27709105-S	ILMN_288342	RGD1563378_PREDICTED	XM_001059106.1	XM_001059106.1		302719	109511834	XM_001059106.1	RGD1563378_predicted	XP_001059106.1	ILMN_1360802	0004150722	S	442	ATGGGTGGCTACCTGACCAACCTCCGTCAGATGGGAGCACCGGAACAAGG				Xq22	PREDICTED: Rattus norvegicus similar to ferritin heavy polypeptide-like 17 (predicted) (RGD1563378_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_45827740-S	ILMN_302300	VKORC1	NM_203335.2	NM_203335.2		309004	45827740	NM_203335.2	Vkorc1	NP_976080.1	ILMN_1355605	0007100070	S	468	GCTTCCAGAAGGTGCCAGAACACAAGGTCAAAAAGCCCTGAGGTCCCACC	1	-	187176969-187176978:187176979-187177018	1q36	Rattus norvegicus vitamin K epoxide reductase complex, subunit 1 (Vkorc1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IMP]; The chemical reactions and pathways involving any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. Vitamin K substances share a methylated naphthoquinone ring structure and vary in the aliphatic side chains attached to the molecule [goid 42373] [evidence ISS]; The chemical reactions and pathways involving any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. Vitamin K substances share a methylated naphthoquinone ring structure and vary in the aliphatic side chains attached to the molecule [goid 42373] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of coagulation [goid 50820] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of coagulation [goid 50820] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 2-methyl-3-phytyl-1,4-naphthoquinone + oxidized dithiothreitol + H2O = 2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone + 1,4-dithiothreitol [goid 47057] [evidence IDA]; Catalysis of the reaction: 2-methyl-3-phytyl-1,4-naphthoquinone + oxidized dithiothreitol + H2O = 2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone + 1,4-dithiothreitol [goid 47057] [evidence ISS]; Catalysis of the reaction: 2-methyl-3-phytyl-1,4-naphthoquinone + oxidized dithiothreitol + H2O = 2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone + 1,4-dithiothreitol [goid 47057] [evidence IEA]; Catalysis of the reaction: 3-hydroxy-2-methyl-3-phytyl-2,3-dihydronaphthoquinone + oxidized dithiothreitol + H2O = 2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone + 1,4-dithiothreitol [goid 47058] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_58865509-A	ILMN_291014	GIMAP6	NM_001011968.1	NM_001011968.1		297076	58865509	NM_001011968.1	Gimap6	NP_001011968.1	ILMN_1376858	0001050403	S	830	CCATTGTGGCTTCAACAACAGGGCACAAGGGGATGAGCAGGAGGCCCAGT	4	-	76795259-76795308	4q24	Rattus norvegicus GTPase, IMAP family member 6 (Gimap6), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC108948; Ian6	MGC108948; Ian6
Rattus norvegicus	RefSeq	GI_62662307-S	ILMN_61641	LOC502050	XM_577483.1	XM_577483.1		502050	62662307	XM_577483.1	LOC502050	XP_577483.1	ILMN_1357222	0002970114	S	147	GTCAGCCAAGGACAAGACTACACAGACCAGGTTGAGAATTCTTCTGTTGA				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502050), mRNA.					
Rattus norvegicus	RefSeq	GI_47576874-S	ILMN_287145	OLR220	NM_001000552.1	NM_001000552.1		365341	47576874	NM_001000552.1	Olr220	NP_001000552.1	ILMN_1362082	0003290369	S	872	GCCTGAGAAACAAGGATGTCAAGGGGGCTCTCAGGAGAATAACTACAAAA	1	+	164152991-164153040	1q33	Rattus norvegicus olfactory receptor 220 (Olr220), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr220; ratchr1-164247597-164248520_ORF	Olr220; ratchr1-164247597-164248520_ORF
Rattus norvegicus	RefSeq	GI_57164070-S	ILMN_301868	V1RE5	NM_001009514.1	NM_001009514.1		494234	57164070	NM_001009514.1	V1re5	NP_001009514.1	ILMN_1375066	0006110047	S	259	TTTCAAAGGCTTGGCAGGAGCATGTCCATCAGCACCACCTGTCTCTTGAG	1	-	49437803-49437852	1q12	Rattus norvegicus vomeronasal 1 receptor, E5 (V1re5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34870220-S	ILMN_291364	RGD1562848_PREDICTED	XM_001069309.1	XM_001069309.1		362565	109477028	XM_001069309.1	RGD1562848_predicted	XP_001069309.1	ILMN_1370635	0001050722	S	386	GCTGGGATAGCAGGAGCAATGGCGATCTGGAGTGACAGAGCAGTTGAAGG				5q35-q36	PREDICTED: Rattus norvegicus RGD1562848 (predicted) (RGD1562848_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654681-S	ILMN_69873	GUCA1A_PREDICTED	XM_217341.4	XM_217341.4		301233	109485761	XM_217341.4	Guca1a_predicted	XP_217341.1	ILMN_1365877	0004670373	S	671	ACGCTGACCCGAAGCCTGGACTTGACCCGCATTGTGCGCAGACTTCAGAA	9	+	9056779-9056828	9q12	PREDICTED: Rattus norvegicus guanylate cyclase activator 1a (retina) (predicted) (Guca1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576862-S	ILMN_266142	OLR214	NM_001000197.1	NM_001000197.1		293361	47576862	NM_001000197.1	Olr214	NP_001000197.1	ILMN_1348959	0006840162	S	886	GAGGTCACTGGGGCTTTAAGAAGAATTTTTGGAAGAAGGTTGCAGCCAGC	1	+	164052328-164052377	1q33	Rattus norvegicus olfactory receptor 214 (Olr214), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr214	Olr214
Rattus norvegicus	RefSeq	GI_62665565-S	ILMN_55496	LOC497744	XM_579111.1	XM_579111.1		497744	62665565	XM_579111.1	LOC497744	XP_579111.1	ILMN_1364724	0004570377	S	378	CCGCTTCAGAGATGAACCTCAGGTGTAGAGGATAACACGCCAGGGACCGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001003965 (LOC497744), mRNA.					
Rattus norvegicus	RefSeq	GI_62652513-S	ILMN_282983	RGD1560217_PREDICTED	XR_008318.1	XR_008318.1		503153	109482214	XR_008318.1	RGD1560217_predicted		ILMN_1365974	0004060164	S	459	TGTCCTTCTGGCAGACAACTTCAGCATTGTGGAAAGACCCATGACCGCAG				7q31	PREDICTED: Rattus norvegicus similar to glyceraldehyde 3-phosphate dehydrogenase (predicted) (RGD1560217_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758129-S	ILMN_291654	WNT4	NM_053402.1	NM_053402.1		84426	16758129	NM_053402.1	Wnt4	NP_445854.1	ILMN_1356435	0005700059	S	1084	ACCACCTGCGTGGCCCAGGGAAGGCCAATAACTTAAACAGTCTCCCGCCA	5	+	156083071-156083120	5q36	Rattus norvegicus wingless-related MMTV integration site 4 (Wnt4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]	The morphogenesis of an embryonic epithelium into a tube-shaped structure [goid 1838] [evidence ISS]; The morphogenesis of an embryonic epithelium into a tube-shaped structure [goid 1838] [evidence IEA]; The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence ISS]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence ISS]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 40037] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity [goid 40037] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 48599] [evidence ISS]; The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 48599] [evidence IEA]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence ISS]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC112773	MGC112773
Rattus norvegicus	RefSeq	GI_62648050-A	ILMN_301593	ATG7	NM_001012097.1	NM_001012097.1		312647	58865763	NM_001012097.1	Atg7	NP_001012097.1	ILMN_1376330	0006110372	S	2115	AACCACAGCTCAGGAGTACTTGGCCCTCAGCGCAGAACTGAACCCCAGGA	4	+	150992511-150992560	4q42	Rattus norvegicus ATG7 autophagy related 7 homolog (S. cerevisiae) (Atg7), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The covalent or non-covalent attachment of lipid moieties to an amino acid in a protein [goid 6497] [evidence IEA]; The covalent or non-covalent attachment of lipid moieties to an amino acid in a protein [goid 6497] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence ISS]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence ISS]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The process whose specific outcome is the progression of the cerebellar Purkinje cell layer over time, from its formation to the mature structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells [goid 21680] [evidence ISS]; The progression of a pyramidal neuron from its initial formation to its mature state [goid 21860] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that modulates the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31396] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein [goid 31401] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein [goid 31401] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein [goid 31401] [evidence ISS]; A process by which one or more moieties of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to a target protein [goid 32446] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; The process whose specific outcome is the progression of a cardiac muscle cell over time, from its formation to the mature state [goid 55013] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the activation of the C-terminal carboxyl group of ubiquitin by the formation of a high-energy thiolester bond in an ATP-dependent manner [goid 4839] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Apg7l	Apg7l
Rattus norvegicus	RefSeq	GI_34883116-S	ILMN_161855	LOC363429	XM_343751.1	XM_343751.1			34883116	XM_343751.1	LOC363429		ILMN_2040706	0000460445	S	46	GTTTGTGGAGTAAGTTCTGGGCAGTGTATTTTGAGCTTCCTGCCAGGGGG					Rattus norvegicus similar to RIKEN cDNA 4933431D05 (LOC363429), mRNA.					
Rattus norvegicus	RefSeq	GI_62643159-S	ILMN_273403	MGC108776	NM_001017466.1	NM_001017466.1		361916	62945287	NM_001017466.1	MGC108776	NP_001017466.1	ILMN_1364820	0006180152	S	1433	GTGGACACTCGCAGGCTGTTGCCAGCACCGTTCATTCTCTGCTGTTTTGT	2	-	93330591-93330640	2q23	Rattus norvegicus Snf7 homologue associated with Alix 3 (MGC108776), mRNA.					
Rattus norvegicus	RefSeq	GI_62657317-S	ILMN_270235	CD300LE_PREDICTED	XR_009489.1	XR_009489.1		360655	109492201	XR_009489.1	Cd300le_predicted		ILMN_1363786	0004670400	S	675	GCCCATAGCTCTGGTGCCCAGGACAGAGAGAAACACTTCCCAGGAGATGG				10q32.2	PREDICTED: Rattus norvegicus CD300 antigen like family member E (predicted) (Cd300le_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642447	ILMN_64791	SH3PXD2A_PREDICTED	XM_219971.4	XM_219971.4		309460	109460194	XM_219971.4	Sh3pxd2a_predicted	XP_219971.4	ILMN_1650731	0007100400	S	3276	TAGAGGTGTCCGAAGAAACTCCTCCTTCAGTACCGCACGGTCAGCAGCCG	1	-	252601535-252601584	1q54	PREDICTED: Rattus norvegicus SH3 and PX domains 2A (predicted) (Sh3pxd2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577920	ILMN_291213	OLR1143	NM_001001017.1	NM_001001017.1		405391	47577920	NM_001001017.1	Olr1143	NP_001001017.1	ILMN_1650394	0006650070	S	321	TGGTGGTATAGAAAATTGTCTCCTGGCAGTGATGGCCTATGACCGCTATG	8	+	17447063-17447112	8q13	Rattus norvegicus olfactory receptor 1143 (Olr1143), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1143	Olr1143
Rattus norvegicus	RefSeq	GI_18426835-S	ILMN_58801	SDF4	NM_130412.1	NM_130412.1		155173	18426835	NM_130412.1	Sdf4	NP_569096.1	ILMN_1354307	0006980711	S	1019	GTACAGTGAGTTCTTCACGGGCAGCAAGCTGATGGACTATGCCCGCAACG				5q36	Rattus norvegicus stromal cell derived factor 4 (Sdf4), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC93237	MGC93237
Rattus norvegicus	RefSeq	GI_62665425-S	ILMN_269979	GAS8	NM_001039030.1	NM_001039030.1		361438	84781687	NM_001039030.1	Gas8	NP_001034119.1	ILMN_1367185	0003120017	S	989	GGACCTGAAGTGGGAGCATGAGATCCTGGAGCAGAGGTTCATCAAGGTGC	19	+	53849436-53849481:53852093-53852096	19q12	Rattus norvegicus growth arrest specific 8 (Gas8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]	Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124779	MGC124779
Rattus norvegicus	RefSeq	GI_62663712-S	ILMN_64482	RGD1562989_PREDICTED	XM_229637.4	XM_229637.4		302075	109505107	XM_229637.4	RGD1562989_predicted	XP_229637.2	ILMN_1349741	0006770687	S	2050	CAAATTGGTGTGGCCCTAGCTCATGACAGCTTCCGGCCTCCACTGGAGTA	17	+	67480168-67480217	17q12.1	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (predicted) (RGD1562989_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651651-S	ILMN_52462	ZFPN1A4_PREDICTED	XM_222307.3	XM_222307.3		304606	62651651	XM_222307.3	Zfpn1a4_predicted	XP_222307.3	ILMN_1349051	0000940152	S	1550	CAGTCCCGCCTATGCCAAAGAGGACCCCAAACCACAAGAGGGGTTGTTGC					PREDICTED: Rattus norvegicus zinc finger protein, subfamily 1A, 4 (Eos) (predicted) (Zfpn1a4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660103	ILMN_47851	LOC360910	XM_341185.2	XM_341185.2		360910	62660103	XM_341185.2	LOC360910	XP_341186.2	ILMN_1650080	0001410670	S	2614	GAAGGGAGTGTAAGGAAAATGAGAGAGGTGGACGGAGGGGGAAATGGCTG				14p22	PREDICTED: Rattus norvegicus similar to ATP-binding cassette transporter ABCG3 (LOC360910), mRNA.					
Rattus norvegicus	RefSeq	GI_25742750-S	ILMN_300457	CRMP1	NM_012932.1	NM_012932.1		25415	25742750	NM_012932.1	Crmp1	NP_037064.1	ILMN_1374446	0001170341	S	2606	GCCTGAGTCTCTGTCCCTCTGAGGAGGTCAGCAAGGCAGTCAGATTTTTA	14	-	79076420-79076469	14q21	Rattus norvegicus collapsin response mediator protein 1 (Crmp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658251-S	ILMN_58234	OLR1571_PREDICTED	XM_344047.3	XM_344047.3		363838	109493666	XM_344047.3	Olr1571_predicted	XP_344048.3	ILMN_1371812	0007050601	S	581	ACTCACACTCAACTGCACGGGCATCTGTTATGTACAGTGTGGTCACCCCC	11	+	86378012-86378061	11q23	PREDICTED: Rattus norvegicus olfactory receptor 1571 (predicted) (Olr1571_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981427-S	ILMN_297735	PSPN	NM_013014.1	NM_013014.1		25525	6981427	NM_013014.1	Pspn	NP_037146.1	ILMN_1359755	0004230594	S	344	AGGGTCGAGCTCATGGCAGACCTTGCTGCCAGCCCACCAGCTATGCTGAT	Un|NW_047865.1	+	65151-65200		Rattus norvegicus persephin (Pspn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Branching of the ureteric bud [goid 1658] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	PSP	PSP
Rattus norvegicus	RefSeq	GI_62654347-S	ILMN_52637	LOC367171	XM_576473.1	XM_576473.1		367171	62654347	XM_576473.1	LOC367171	XP_576473.1	ILMN_1373979	0006020059	S	1713	CAAACCTAACAAGAAGGGGGCCTGATGGAGCTGGGAAGGACGCAGTAGGG				8q32	PREDICTED: Rattus norvegicus microtubule-associated protein 4 (LOC367171), mRNA.					
Rattus norvegicus	RefSeq	GI_62667209-S	ILMN_287864	RGD1561826_PREDICTED	XR_008165.1	XR_008165.1		367885	109512268	XR_008165.1	RGD1561826_predicted		ILMN_1363896	0005270458	S	343	GCAGCCCAGAAACAGCACTCCAATCCATCCAATGAGGTCAAGACACAGCT				Xq32	PREDICTED: Rattus norvegicus similar to testis-expressed homeobox protein Tex1 (predicted) (RGD1561826_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577778-S	ILMN_269264	OLR1240	NM_001000448.1	NM_001000448.1		300565	47577778	NM_001000448.1	Olr1240	NP_001000448.1	ILMN_1371066	0002060546	S	662	TTCTGTCCAGCATTTTCCACATCAAATCTAATGAAGGCAGGTCCAAGGCC	8	+	40606750-40606799	8q22	Rattus norvegicus olfactory receptor 1240 (Olr1240), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1240	Olr1240
Rattus norvegicus	RefSeq	GI_47576182-S	ILMN_300839	OLR1352	NM_001000953.1	NM_001000953.1		405301	47576182	NM_001000953.1	Olr1352	NP_001000953.1	ILMN_1374285	0000540193	S	313	GCCACTCAGTTCTTCTTTTTCTCTTTGTTGGCTGCCACTGAGGCTGTGCT	9	+	91821633-91821682	9q36	Rattus norvegicus olfactory receptor 1352 (Olr1352), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1352	Olr1352
Rattus norvegicus	RefSeq	GI_13592074-S	ILMN_290111	RPS24	NM_031112.1	NM_031112.1		81776	13592074	NM_031112.1	Rps24	NP_112374.1	ILMN_1370110	0006450041	S	340	CCCGCAAACAGCGAAAAGAACGAAAGAACAGAATGAAGAAGGTCAGGGGG	16	+	46018-46067	16p16	Rattus norvegicus ribosomal protein S24 (Rps24), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [pmid 2335205] [evidence NAS]; The smaller of the two subunits of a ribosome [goid 15935] [evidence ISS]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence ISS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process of regulating the production and elimination of erythrocytes within an organism [goid 34101] [evidence ISS]; The formation of the constituents of the small ribosomal subunit, their assembly, and their transport to the sites of protein synthesis [goid 42274] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [pmid 2335205] [evidence NAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [pmid 2335205] [evidence NAS]; Interacting selectively with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation [goid 31369] [pmid 3384085] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62646170-S	ILMN_48861	LOC502674	XM_578171.1	XM_578171.1		502674	62646170	XM_578171.1	LOC502674	XP_578171.1	ILMN_1364993	0006840685	S	2	GGCTTATACAGCATGTGGAAGTTGGAAATCAGCCTCAGGAGTTCAAGTTG				3q41	PREDICTED: Rattus norvegicus similar to destrin - rat (LOC502674), mRNA.					
Rattus norvegicus	RefSeq	GI_51092267-S	ILMN_278007	NDUFV2	NM_031064.1	NM_031064.1		81728	51092267	NM_031064.1	Ndufv2	NP_112326.1	ILMN_1351818	0002140603	S	711	GGAGTGGCCGCTTCTGTTGTGAGCCAGCCGGAGGCCTTACTTCTTTGACT	9	-	104852806-104852855	9q37	Rattus norvegicus NADH dehydrogenase (ubiquinone) flavoprotein 2 (Ndufv2), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor [goid 3954] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34862352-S	ILMN_265379	RGD1307278_PREDICTED	XM_001074414.1	XM_001074414.1		362841	109481551	XM_001074414.1	RGD1307278_predicted	XP_001074414.1	ILMN_2039775	0001430554	S	1538	TTGCCCTCCCTGAGGAGCTGCCCCTTGTGTCCAGCCCTGTGGCTCTGAAT				7q11	PREDICTED: Rattus norvegicus similar to KIAA1193 protein (predicted) (RGD1307278_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162346-S	ILMN_292168	FDXR	NM_024153.1	NM_024153.1		79122	13162346	NM_024153.1	Fdxr	NP_077067.1	ILMN_1362349	0002680372	S	1441	GGGCACTGGGAAACCAAGGGAGAAGCTGGTGGATCGAAGAGAGATGCTGC	10	-	105342980-105343029	10q32.2	Rattus norvegicus ferredoxin reductase (Fdxr), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+ [goid 4324] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: oxidized adrenodoxin + NADPH + H+ = reduced adrenodoxin + NADP+ [goid 15039] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643175-S	ILMN_57745	LOC502511	XM_577995.1	XM_577995.1		502511	62643175	XM_577995.1	LOC502511	XP_577995.1	ILMN_1372787	0007040110	S	485	GGATGACCCCTCTGGAAAGTTGTGGCATGATGAGAAACCTGCCAAGTATG				2q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC502511), mRNA.					
Rattus norvegicus	RefSeq	GI_62652019-S	ILMN_281059	LOC680606	XM_001057963.1	XM_001057963.1		680606	109480466	XM_001057963.1	LOC680606	XP_001057963.1	ILMN_1357157	0004850687	S	480	TGCAATGCTATGGGCGCTATCTCCAGGGGTTCACCACCGACTTCGACTTC	7	-	30072763-30072812	7q13	PREDICTED: Rattus norvegicus hypothetical protein LOC680606 (LOC680606), mRNA.					
Rattus norvegicus	RefSeq	GI_62639656-S	ILMN_269509	RGD1311142_PREDICTED	XM_001077811.1	XM_001077811.1		361564	109461848	XM_001077811.1	RGD1311142_predicted	XP_001077811.1	ILMN_1367507	0004200128	S	734	ACTGTGCCTGAGGAGTCTGAGGATGAGGATGAGGTCGAGGAGGGGCAGTT				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32796 (predicted) (RGD1311142_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644301-S	ILMN_265497	NDST4_PREDICTED	XM_001075825.1	XM_001075825.1		362035	109467581	XM_001075825.1	Ndst4_predicted	XP_001075825.1	ILMN_1356379	0001580441	S	2532	CTACTGGAAGGAGGGAAAACCAAATGTCTCGGGAAGAGCAAAGGACGGAG				2q42	PREDICTED: Rattus norvegicus N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 (predicted) (Ndst4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_10120489-S	ILMN_281340	AADAC	NM_020538.1	NM_020538.1		57300	10120489	NM_020538.1	Aadac	NP_065413.1	ILMN_1348794	0002060494	S	937	GGAGCTGGCTCAAAAGTACCCAGGGTTCACAGATGTAAAGGCATGCCCTC	2	+	149359473-149359522	2q31	Rattus norvegicus arylacetamide deacetylase (esterase) (Aadac), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence NAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule [goid 19213] [evidence ISS]	Aada	Aada
Rattus norvegicus	RefSeq	GI_62665933-S	ILMN_265908	SLC25A16	XM_001080562.1	XM_001080562.1		361836	109510043	XM_001080562.1	Slc25a16	XP_001080562.1	ILMN_1366213	0002900014	S	990	CCCATTTGATGTAACCCGTCGGAGAATGCAGTTGGGGGCAGTCCTACCGG				20p11	PREDICTED: Rattus norvegicus solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 (Slc25a16), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654399-S	ILMN_55008	LOC363153	XM_343492.3	XM_343492.3		363153	109484017	XM_343492.3	LOC363153	XP_343493.3	ILMN_1374619	0007050725	S	2568	TAACTCATGGCCTTCAAAGGAAGAGGAGACTTCGACAGCTGGCTGAGGAC	8	-	116675229-116675278	8q32	PREDICTED: Rattus norvegicus similar to cyclic AMP-regulated phosphoprotein, 21 isoform 2 (LOC363153), mRNA.					
Rattus norvegicus	RefSeq	GI_50054360-S	ILMN_289415	XPNPEP2	NM_057155.2	NM_057155.2		117522	50054360	NM_057155.2	Xpnpep2	NP_476496.1	ILMN_1369859	0001770671	S	2893	CCACAACTCCTTAACTACCAATGCACCCCTTAACAAGCCACCACGCAGGG	X	+	134501588-134501637	Xq35	Rattus norvegicus X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound (Xpnpep2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654848-S	ILMN_302587	RGD1562851_PREDICTED	XR_007528.1	XR_007528.1		367205	109486508	XR_007528.1	RGD1562851_predicted		ILMN_1374309	0000610088	S	208	GCTGTCTGGGCCAAAGGAATAATGAACGTTCCGTACCGCATTCAAGTACA				9q11	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1562851_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58331250-S	ILMN_288634	LOC494499	NM_001010921.1	NM_001010921.1		494499	58331250	NM_001010921.1	LOC494499	NP_001010921.1	ILMN_1349469	0006400014	S	695	GCGGAGCTGCACTGTCCAATTTCTTGTAATCCAGGCTCTGATGTTTTGCA	8	+	83211900-83211900:83211901-83211949	8q31	Rattus norvegicus LOC494499 protein (LOC494499), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC114217	MGC114217
Rattus norvegicus	RefSeq	GI_62642589-S	ILMN_49913	LOC502398	XM_577878.1	XM_577878.1		502398	62642589	XM_577878.1	LOC502398	XP_577878.1	ILMN_1356994	0006510341	S	965	CCTCAGGCCAGACCCTGAAATTTTGGCCTTGATCCTGCAGGTGCTTTTAG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502398), mRNA.					
Rattus norvegicus	RefSeq	GI_62646647-S	ILMN_290971	LOC499971	NM_001024317.1	NM_001024317.1		499971	66730291	NM_001024317.1	LOC499971	NP_001019488.1	ILMN_1357238	0005390427	S	1226	GCTCCTTCAACTGACCAAGAAGCCACTGGTTGCCTCCGAGTTTGTGGTGC	4	+	6007456-6007505	4q11	Rattus norvegicus similar to hypothetical protein 4931409K22 (LOC499971), mRNA.					
Rattus norvegicus	RefSeq	GI_47577168-S	ILMN_298775	OLR748	NM_001000365.1	NM_001000365.1		296001	47577168	NM_001000365.1	Olr748	NP_001000365.1	ILMN_1351526	0001690128	S	440	GGGCTTGGATCATTGGATTTTTGCATTCAGTGGCCCAACTAGGTTTTGTT	3	+	96821292-96821341	3q34	Rattus norvegicus olfactory receptor 748 (Olr748), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr748; ratchr3-96717281-96718219_ORF	Olr748; ratchr3-96717281-96718219_ORF
Rattus norvegicus	RefSeq	GI_12621079-S	ILMN_297448	GALNT7	NM_022926.1	NM_022926.1		29750	12621079	NM_022926.1	Galnt7	NP_075215.1	ILMN_1370216	0001410338	S	2015	ACAGTGTGTGACGGGAACGGAAGAAGCCAACAGTCCACCTGCGGACAAGT	16	+	36119737-36119748:36119749-36119786	16p11	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) (Galnt7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [evidence ISS]	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928913-S	ILMN_299178	ARPP-19	NM_031660.1	NM_031660.1		60336	13928913	NM_031660.1	Arpp-19	NP_113848.1	ILMN_1372795	0004070091	S	15	CCCCGAGGCAGCGTCGGCGGAGGAGCAAAAAGAAATGGAAGATAAAGTAA	8	+	79824751-79824781:79839817-79839835	8q24	Rattus norvegicus cyclic AMP phosphoprotein (Arpp-19), mRNA.		The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of gluconeogenesis [goid 45722] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence IDA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS];  [goid 15459] [evidence ISS]	ARPP-19	ARPP-19
Rattus norvegicus	RefSeq	GI_62643829	ILMN_265804	RGD1562234_PREDICTED	XM_001058191.1	XM_001058191.1		499657	109467135	XM_001058191.1	RGD1562234_predicted	XP_001058191.1	ILMN_1650358	0001940594	S	213	ACCCTTGATGAGATTTGGGACATGATTGGAAGAATGGCCATGGCGTACAA				2q34	PREDICTED: Rattus norvegicus similar to S100 calcium-binding protein, ventral prostate (predicted) (RGD1562234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717712-S	ILMN_279218	LOC503280	XR_007520.1	XR_007520.1		503280	109521048	XR_007520.1	LOC503280		ILMN_1365039	0005570180	S	399	CATTCTTATGGAGCAGATCCCCAAACTGAAGGCACAGGAGGCCCGCAAGG					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC503280), mRNA.					
Rattus norvegicus	RefSeq	GI_13994183-S	ILMN_287142	GCS1	NM_031749.1	NM_031749.1		78947	13994183	NM_031749.1	Gcs1	NP_113937.1	ILMN_1349280	0005900017	S	2357	CTTCGGGCCAATGTAGTAAGCAACGTACGGCAGCAATACCAGGCTACAGG	4	+	117330674-117330723	4q34	Rattus norvegicus glucosidase 1 (Gcs1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9311] [evidence IEA]	Catalysis of the exohydrolysis of the non-reducing terminal glucose residue in the mannosyl-oligosaccharide Glc(3)Man(9)GlcNAc(2) [goid 4573] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666936-S	ILMN_56987	LOC501581	XM_580212.1	XM_580212.1		501581	62666936	XM_580212.1	LOC501581	XP_580212.1	ILMN_1363857	0005570270	S	365	GCCTCCTCAGCAAGCCACCAAAGACTAGAAATCCATTCACAGGTCTGGCA				Xq31	PREDICTED: Rattus norvegicus LOC501581 (LOC501581), mRNA.					
Rattus norvegicus	RefSeq	GI_62657598-S	ILMN_58320	LOC498053	XM_573253.1	XM_573253.1		498053	62657598	XM_573253.1	LOC498053	XP_573253.1	ILMN_1368077	0001690079	S	1728	GGGTCCAGATATTGCTATCCAACCTACTTGGCTTCTCGTTCCTGCCAACC					PREDICTED: Rattus norvegicus similar to Keratin associated protein 13-1 (LOC498053), mRNA.					
Rattus norvegicus	RefSeq	GI_56605715-S	ILMN_273287	MAEA	NM_001008319.1	NM_001008319.1		298982	56605715	NM_001008319.1	Maea	NP_001008320.1	ILMN_1349844	0004070593	S	1801	TGCACAGGTTCAGCGTCTCACCTTCCAGCACCGCCTTATCTCCTGCTTTG	14	+	83157877-83157926	14q21	Rattus norvegicus macrophage erythroblast attacher (Maea), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells. In animal cells, the contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis [goid 5826] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptosis [goid 33033] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for an erythrocyte to attain its fully functional state [goid 43249] [evidence IEA]; The process aimed at the progression of an erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48821] [evidence ISS]; The process aimed at the progression of an enucleate erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48822] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]	MGC93683	MGC93683
Rattus norvegicus	RefSeq	GI_62645731-S	ILMN_274082	TRAF6_PREDICTED	XM_001079281.1	XM_001079281.1		311245	109470384	XM_001079281.1	Traf6_predicted	XP_001079281.1	ILMN_1353721	0003710338	S	1576	AGAACTGCTTGCCTTTCAGCGGCCCACCATCCCACGGAACCCCAAAGGTT				3q31	PREDICTED: Rattus norvegicus Tnf receptor-associated factor 6 (predicted) (Traf6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078466-S	ILMN_297299	RGD1309437	NM_001013866.1	NM_001013866.1		288176	62078466	NM_001013866.1	RGD1309437	NP_001013888.1	ILMN_1364292	0003990170	S	915	CAGCCTATGCAAATCGGACTCCTTGAAGCTGGGCCTTTTCTGAGCCAGGG	11	+	44068371-44068413:44068414-44068420	11q12	Rattus norvegicus similar to RIKEN cDNA 2610528E23 (RGD1309437), mRNA.				MGC108788	MGC108788
Rattus norvegicus	RefSeq	GI_62662911-S	ILMN_284977	HTRA4_PREDICTED	XM_001071971.1	XM_001071971.1		306564	109504392	XM_001071971.1	Htra4_predicted	XP_001071971.1	ILMN_1358525	0002060397	S	1330	GTCAGCATAAACGGGCAGCCTGTCACGACCACAACCGATGTCATTGAAGC				16q12.4	PREDICTED: Rattus norvegicus HtrA serine peptidase 4 (predicted) (Htra4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978742-S	ILMN_277211	CYP2A3A	NM_012542.1	NM_012542.1		24299	6978742	NM_012542.1	Cyp2a3a	NP_036674.1	ILMN_1371649	0000430471	S	1101	CATGGGCCTGGCTCGCAGGGTCACCAAGGACACCAAGTTTCGAGAGTTCC	1	+	81951406-81951447:81952631-81952638	1q21	Rattus norvegicus cytochrome P450, family 2, subfamily A, polypeptide 3a (Cyp2a3a), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence TAS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	Cyp2a3; RATCYP2A3A	Cyp2a3; RATCYP2A3A
Rattus norvegicus	RefSeq	GI_62664512-S	ILMN_268536	LOC682303	XM_001058643.1	XM_001058643.1		682303	109507376	XM_001058643.1	LOC682303	XP_001058643.1	ILMN_1368733	0001850520	S	405	GAAGACTGCCGAGTGCTTTTCAGACGGAGCTGAACCTCAGGACCACAAGC					PREDICTED: Rattus norvegicus similar to GrpE protein homolog 2, mitochondrial precursor (Mt-GrpE#2) (LOC682303), mRNA.					
Rattus norvegicus	RefSeq	GI_62657021-S	ILMN_60999	CDC6_PREDICTED	XM_340896.3	XM_340896.3		360621	109488951	XM_340896.3	Cdc6_predicted	XP_340897.3	ILMN_1367978	0002060364	S	1593	GCAGGTGGCAGCCGTAGACCAGTCTGAGTGTTTGTCCCTTTCTGGACTCC	10	+	87696620-87696669	10q31	PREDICTED: Rattus norvegicus cell division cycle 6 homolog (S. cerevisiae) (predicted) (Cdc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576504-S	ILMN_264282	OLR161	NM_001001000.1	NM_001001000.1		405364	47576504	NM_001001000.1	Olr161	NP_001001000.1	ILMN_1355267	0006770047	S	462	GACCTTCAGAAATTTTGTGGCTCCCATTTCAGTACCTGTGTTGGCTGCTC	1	+	162319640-162319689	1q33	Rattus norvegicus olfactory receptor 161 (Olr161), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr161	Olr161
Rattus norvegicus	RefSeq	GI_62659824-S	ILMN_285695	TAGLN2	NM_001013127.1	NM_001013127.1		304983	61557027	NM_001013127.1	Tagln2	NP_001013145.1	ILMN_1650399	0006480743	S	387	CCAGACTGTGGATCTCTGGGAAGGAAAGAACATGGCTTGTGTGCAGCGGA	13	+	88510667-88510689:88510990-88511016	13q24	Rattus norvegicus transgelin 2 (Tagln2), mRNA.		The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657743-S	ILMN_65708	LOC363751	XM_577174.1	XM_577174.1		363751	62657743	XM_577174.1	LOC363751	XP_577174.1	ILMN_1372809	0006100563	S	1410	GGCTTACATGCACCACCGCACCACGGGAACGCCATCACAACAAAAGCTGG					PREDICTED: Rattus norvegicus similar to pactolus; integrin beta subunit-like cell-surface protein (LOC363751), mRNA.					
Rattus norvegicus	RefSeq	GI_62654927-S	ILMN_63137	LOC363218	XM_343556.2	XM_343556.2		363218	62654927	XM_343556.2	LOC363218	XP_343557.2	ILMN_1369935	0004480441	S	866	TGGGAAGCCCCATTCATGCTTTTGCCCAGCGTTCTGCGCCTGGAAGACCT					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC363218), mRNA.					
Rattus norvegicus	RefSeq	GI_62659773-S	ILMN_283423	IFI204	NM_001012029.1	NM_001012029.1		304988	58865633	NM_001012029.1	Ifi204	NP_001012029.1	ILMN_2038896	0002060424	S	1473	GCAGCCACTGCCCATCCAAGCACAAAAAAGGAAGAAGGAACTCACTACCC	13	-	89753218-89753267	13q24	Rattus norvegicus interferon activated gene 204 (Ifi204), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence ISS]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the initiation of apoptosis (programmed cell death) [goid 42771] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]	rHin-3	rHin-3
Rattus norvegicus	RefSeq	GI_62659773-S	ILMN_283423	IFI204	NM_001012029.1	NM_001012029.1		304988	58865633	NM_001012029.1	Ifi204	NP_001012029.1	ILMN_2039134	0005700619	A	1313	AGAAGTGGTGGGGAGTGGAAAATGGTACAACATCAACTGTAACGAAGGAG	13	-	89755881-89755930	13q24	Rattus norvegicus interferon activated gene 204 (Ifi204), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence ISS]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the initiation of apoptosis (programmed cell death) [goid 42771] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]	rHin-3	rHin-3
Rattus norvegicus	RefSeq	GI_31377519-S	ILMN_262556	SGTA	NM_022703.2	NM_022703.2		64667	31377519	NM_022703.2	Sgta	NP_073194.1	ILMN_1369522	0001850427	S	1789	CCACGCCCCTTTTTGGCCCTGGGAACAGGTGGTGAGATCGAAAGAGAGCT	7	+	10154181-10154230	7q11	Rattus norvegicus small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha (Sgta), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC105278; Stg	MGC105278; Stg
Rattus norvegicus	RefSeq	GI_62653993-S	ILMN_274453	RGD1564649_PREDICTED	XR_009081.1	XR_009081.1		367102	109484880	XR_009081.1	RGD1564649_predicted		ILMN_1365113	0006520066	S	440	TCAGGGTCCGCAAGCAGGTGGTGAACGTCATTGTTCGTCTGGACTCTCAG				8q24	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S9 (predicted) (RGD1564649_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653459-S	ILMN_279308	RGD1562690_PREDICTED	XM_001056645.1	XM_001056645.1		500965	109484452	XM_001056645.1	RGD1562690_predicted	XP_001056645.1	ILMN_1353269	0006290161	S	1417	CTGGCTCCAGTGTGTAAGTCCATCGTGCATATCTTGTGCATATCTTGTGC				8q13	PREDICTED: Rattus norvegicus similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) (predicted) (RGD1562690_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454239-S	ILMN_64066	CRY1	NM_198750.2	NM_198750.2		299691	80861397	NM_198750.2	Cry1	NP_942045.2	ILMN_1352105	0000130064	S	2747	ACTGCTTTAGAAGCTCCGTGGAATCAGTGCGAACGCTCCTGTCTGCGTGG	7	+	20709040-20709089	7q13	Rattus norvegicus cryptochrome 1 (photolyase-like) (Cry1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA [goid 3913] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation [goid 9881] [evidence IEA]	MGC124541	MGC124541
Rattus norvegicus	RefSeq	GI_31340568-S	ILMN_298145	DCLK1	NM_053343.2	NM_053343.2		83825	31340568	NM_053343.2	Dclk1	NP_445795.1	ILMN_1358052	0006940180	S	4064	GGTGGTAGTCTGGTGATGGGACTTGCCCTTCCTTACCAACAAGACCAGTC	2	+	144753870-144753919	2q26	Rattus norvegicus doublecortin-like kinase 1 (Dclk1), mRNA.		The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region [goid 21952] [evidence IEA]; Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region [goid 21952] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; Long distance growth of a single process [goid 48675] [evidence IEA]; Long distance growth of a single process [goid 48675] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence IEA]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Dcamkl1; Cpg16	Dcamkl1; Cpg16
Rattus norvegicus	RefSeq	GI_42476049-S	ILMN_278670	CRCP	NM_053670.2	NM_053670.2		114205	42476049	NM_053670.2	Crcp	NP_446122.1	ILMN_1366139	0004230707	S	1229	GACTCCTGGTTCTGGTCCAAGGTCAAAGGGCATCTGGGTATGGCCCTCTT	12	-	27667179-27667228	12q13	Rattus norvegicus calcitonin gene-related peptide-receptor component protein (Crcp), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A DNA polymerase complex that contains two complexes of the catalytic alpha, beta, delta and epsilon polymerase/exonuclease subunits, plus the DnaX complex, a heptamer that includes the tau and gamma products of the dnaX gene and confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands [goid 9360] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase III (Pol III), originating at a Pol III-specific promoter [goid 6383] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The chemical reactions and pathways by which individual cells transform chemical substances [goid 44237] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA];  [goid 1635] [evidence ISS]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence ISS]	Cgrp-rcp	Cgrp-rcp
Rattus norvegicus	RefSeq	GI_62654635-S	ILMN_67684	LOC501092	XM_576507.1	XM_576507.1		501092	62654635	XM_576507.1	LOC501092	XP_576507.1	ILMN_1351971	0000940035	S	1070	AATTTCTACTCAGTGTTGGATGGCTTTTTCCTTAATACCCCCACGCCAAC				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501092), mRNA.					
Rattus norvegicus	RefSeq	GI_20806156-S	ILMN_295130	COMMD5	NM_139108.1	NM_139108.1		245974	20806156	NM_139108.1	Commd5	NP_620808.1	ILMN_1349253	0005290154	S	986	AGCCCTTGGAAGTCTGAGGCTGGAGAATGGGAAGTGTAAGCTGGGCCTGG	7	+	114951050-114951099	7q34	Rattus norvegicus COMM domain containing 5 (Commd5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence NAS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Hcarg	Hcarg
Rattus norvegicus	RefSeq	GI_62653815-S	ILMN_271127	DPP8_PREDICTED	XM_001075075.1	XM_001075075.1		315758	109484840	XM_001075075.1	Dpp8_predicted	XP_001075075.1	ILMN_1353409	0005700333	S	4574	CATGGGGTTCTGTCCTGGGAAGGGAGGGCTGGGTTTTGCTGGCTGTGTAT				8q24	PREDICTED: Rattus norvegicus dipeptidylpeptidase 8 (predicted) (Dpp8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661068-S	ILMN_55960	LOC498445	XM_573700.1	XM_573700.1		498445	62661068	XM_573700.1	LOC498445	XP_573700.1	ILMN_1371333	0005570400	S	379	GCCATGGAGAAGTCCAAGGAGCTCATACAAGAGAACAATTCCTACCGCAT					PREDICTED: Rattus norvegicus similar to Spetex-2C (LOC498445), mRNA.					
Rattus norvegicus	RefSeq	GI_62652214-S	ILMN_57946	XPOT_PREDICTED	XM_235185.4	XM_235185.4		314879	109480609	XM_235185.4	Xpot_predicted	XP_235185.3	ILMN_1368872	0001780040	S	2862	ACCTAAAGGTGTTCTTCCAGAGAGCAAAGCCCTAGGACTGGTCCTCCCCG	7	-	60899380-60899395:60899396-60899422:60902241-60902247	7q22	PREDICTED: Rattus norvegicus exportin, tRNA (nuclear export receptor for tRNAs) (predicted) (Xpot_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393424-S	ILMN_62865	GDI1	NM_017088.2	NM_017088.2		25183	71534275	NM_017088.2	Gdi1	NP_058784.2	ILMN_1360643	0007000008	S	1182	CCAGCACCACCGTAGAGACTGCAGAACCAGAAAAGGAGGTTGAGCCTGCA	X	-	160300377-160300426	Xq37	Rattus norvegicus GDP dissociation inhibitor 1 (Gdi1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IPI]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IEA]	Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding [goid 5093] [evidence IEA]; Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding [goid 5093] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108721	MGC108721
Rattus norvegicus	RefSeq	GI_13786199-S	ILMN_284623	VDAC1	NM_031353.1	NM_031353.1		83529	13786199	NM_031353.1	Vdac1	NP_112643.1	ILMN_1358985	0002030053	S	1601	GCTCAGAGCTGGGCGGGTGATTGTGGTCACACCCTGACAACACTAGGGAT	10	+	37823053-37823102	10q22	Rattus norvegicus voltage-dependent anion channel 1 (Vdac1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; The directed movement of calcium ions (Ca2+) into, out of or within a mitochondrion [goid 6851] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]	Catalysis of the energy-independent passage of anions across a lipid bilayer down a concentration gradient [goid 5253] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion [goid 8308] [evidence IDA]; Catalysis of the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion [goid 8308] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981625-S	ILMN_285794	TAC1	NM_012666.1	NM_012666.1		24806	6981625	NM_012666.1	Tac1	NP_036798.1	ILMN_1371400	0006040286	S	751	GCGATGCAAGTCTCCAAAGACAGAAAGGCTGCTGTGAGGCAGTGCAGGCG	4	+	32657349-32657398	4q21	Rattus norvegicus tachykinin 1 (Tac1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor [goid 7217] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]		TAC; Ppt5fl; PPTA3; RATPPTA3	TAC; Ppt5fl; PPTA3; RATPPTA3
Rattus norvegicus	RefSeq	GI_62658877-S	ILMN_52901	ANAPC5_PREDICTED	XM_213783.4	XM_213783.4		288671	109495903	XM_213783.4	Anapc5_predicted	XP_213783.3	ILMN_1372087	0000450717	S	2311	AGGCTGTACCACGCCCTCGGCAAGACCCAGGAGAGGAACCACTGTGCCAT	12	+	34884545-34884594	12q16	PREDICTED: Rattus norvegicus anaphase-promoting complex subunit 5 (predicted) (Anapc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559977	ILMN_51417	CXCR4	NM_022205.3	NM_022205.3		60628	82617587	NM_022205.3	Cxcr4	NP_071541.2	ILMN_1649910	0003290017	S	758	GCCACCAGAAGCGCAAGGCCCTCAAGACTACGGTCATCCTTATCCTGGCT	13	-	41309186-41309235	13q12	Rattus norvegicus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence ISS]	The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Cell migration that is accomplished by extension and retraction of a pseudopodium [goid 1667] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IDA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IMP]; The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2064] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process by which a neuronal cell in a multicellular organism interprets its surroundings [goid 8038] [evidence IEP]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IMP]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence ISS]; Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43067] [evidence IMP]; Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient [goid 50920] [evidence IMP]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IMP]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence TAS]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence TAS]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IEA]; Interacting selectively with a light chain of a myosin complex [goid 32027] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IEA]	MGC108696	MGC108696
Rattus norvegicus	RefSeq	GI_51948469-S	ILMN_279603	MGC94335	NM_001004251.1	NM_001004251.1		301418	51948469	NM_001004251.1	MGC94335	NP_001004251.1	ILMN_1367238	0002570056	S	1066	GTTCCAGGTGAAGCTGGGGGATCAGAGCGTGGAGACTAAACAGCTGCTCA	9	+	56307839-56307888	9q31	Rattus norvegicus similar to hypothetical protein FLJ22555 (MGC94335), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47576794-S	ILMN_279301	OLR190	NM_001000185.1	NM_001000185.1		293334	47576794	NM_001000185.1	Olr190	NP_001000185.1	ILMN_1363230	0001940739	S	534	TGAGAACTGCATCTGTGCCAACATGTCTGTCTCTAGACTCTCTTGTAGCG	1	+	162857846-162857895	1q33	Rattus norvegicus olfactory receptor 190 (Olr190), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162952790-162953737_ORF; Olr190	ratchr1-162952790-162953737_ORF; Olr190
Rattus norvegicus	RefSeq	GI_62663078-S	ILMN_278588	IRX2	XM_001053004.1	XM_001053004.1		306657	109460536	XM_001053004.1	Irx2	XP_001053004.1	ILMN_1351761	0002510053	S	2317	GGTGTTCGGGGCTCATTTTTCCTGGAGAGCCATTCTGGTAGGAGCTACAG				17p14	PREDICTED: Rattus norvegicus Iroquois related homeobox 2 (Drosophila) (Irx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650992-S	ILMN_64893	LOC497817	XM_579579.1	XM_579579.1		497817	62650992	XM_579579.1	LOC497817	XP_579579.1	ILMN_1370048	0006660563	S	6656	ACGATGGTGTATCTCTCTGTAATGGTGAGCCATGGTGCAAGGTCATAGCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053817 (LOC497817), mRNA.					
Rattus norvegicus	RefSeq	GI_62644809-S	ILMN_49919	VAV2_PREDICTED	XM_216030.4	XM_216030.4		296603	109467946	XM_216030.4	Vav2_predicted	XP_216030.4	ILMN_1368914	0005080129	S	3056	TACGTGGAAGAGGAAGGCATCCAGTGAGGGCGAGACCTGGACAGAACCCA	3	-	6155739-6155762:6155763-6155788	3p12	PREDICTED: Rattus norvegicus Vav2 oncogene (predicted) (Vav2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646144-S	ILMN_70279	ZNF2_PREDICTED	XM_230578.3	XM_230578.3		296133	62646144	XM_230578.3	Znf2_predicted	XP_230578.3	ILMN_1351114	0001400519	S	1058	CATTCTCACCCGCCACCTGCTGACCCACACTGGCAGGAAGCCTTACGAAT					PREDICTED: Rattus norvegicus zinc finger protein 2 (A1-5) (predicted) (Znf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645518-S	ILMN_62934	LOC499855	XM_575196.1	XM_575196.1		499855	62645518	XM_575196.1	LOC499855	XP_575196.1	ILMN_1362924	0006760609	S	791	CACTCGAGACGAAGGAAGCAAGGCCTTTTTCAAGGGTGCATACTCCAACG					PREDICTED: Rattus norvegicus similar to adenine nucleotide translocase (LOC499855), mRNA.					
Rattus norvegicus	RefSeq	GI_62664550-S	ILMN_63951	CPLX4_PREDICTED	XM_341625.3	XM_341625.3		361342	109506722	XM_341625.3	Cplx4_predicted	XP_341626.3	ILMN_1348936	0001660504	S	612	GCTGGCTGGGGACGATGTGGATTTGCCCGAGGATCTCCGAAAGATGGTAG	18	+	62551844-62551893	18q12.1	PREDICTED: Rattus norvegicus complexin 4 (predicted) (Cplx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978594-S	ILMN_296315	CAMK2D	NM_012519.1	NM_012519.1		24246	6978594	NM_012519.1	Camk2d	NP_036651.1	ILMN_1373670	0000580070	S	5420	TGTCTCAGCAAGAAGTTGGGAGCCAGAAGGAGGTGGCCGTGTCCCTGAAA				2q42	Rattus norvegicus calcium/calmodulin-dependent protein kinase II, delta (Camk2d), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IPI]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [pmid 11264466] [evidence TAS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of potassium ions within a cell or between a cell and its external environment [goid 30007] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RATCAMKI; MGC124639; Camki; Camk2; CAMK1	RATCAMKI; MGC124639; Camki; Camk2; CAMK1
Rattus norvegicus	RefSeq	GI_62645532-S	ILMN_283922	OLR765_PREDICTED	XM_001080310.1	XM_001080310.1		499860	109470499	XM_001080310.1	Olr765_predicted	XP_001080310.1	ILMN_1351103	0002630059	S	369	TCTCCTTCACTTCTTTGGAGGGTGTGAGCTAGTGACCCTCATAGCCATGG				3q34	PREDICTED: Rattus norvegicus olfactory receptor 765 (predicted) (Olr765_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641557-S	ILMN_69055	PWWP2_PREDICTED	XM_341955.2	XM_341955.2		361671	62641557	XM_341955.2	Pwwp2_predicted	XP_341956.2	ILMN_1373659	0001230440	S	1825	GAAATGTAACTTTGGTTCCGGGAGCAGGTCACCGACAGTGAGGGTGCAGC				1q41	PREDICTED: Rattus norvegicus PWWP domain containing 2 (predicted) (Pwwp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978654-S	ILMN_66094	CHRNA7	NM_012832.1	NM_012832.1		25302	6978654	NM_012832.1	Chrna7	NP_036964.1	ILMN_2040776	0001260762	S	1908	AGGCTGAAACCAATGCAGAGCAGTCCCCACTGGATCCACCGCAGCAACTG				1q22	Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 7 (Chrna7), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence TAS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IDA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density [goid 32279] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of heart contraction as a result of the baroreceptor response to decreased blood pressure [goid 1988] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of heart contraction as a result of the baroreceptor response to decreased blood pressure [goid 1988] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IMP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine [goid 14061] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine [goid 14061] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IMP]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence ISS]; Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32225] [evidence IEA]; Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32225] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production [goid 32691] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production [goid 32691] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production [goid 32720] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production [goid 32720] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production [goid 32720] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence IEA]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IMP]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence IEP]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEA]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence IEA]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence ISS]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence ISS]; The process which controls the timing of the type of sexual cycle seen in female mammals [goid 60112] [evidence IEA]; The process which controls the timing of the type of sexual cycle seen in female mammals [goid 60112] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence IEA]; Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4889] [evidence IEA];  [goid 4889] [evidence IDA];  [goid 4889] [evidence IEA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IMP];  [goid 4889] [evidence IDA];  [goid 4889] [evidence IMP];  [goid 4889] [evidence IMP];  [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with the enzyme adenylate cyclase [goid 8179] [evidence IPI]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]; Interacting selectively with a toxin, a poisonous substance that causes damage to biological systems. Toxins are differentiated from simple chemical poisons and vegetable alkaloids by their high molecular weight and antigenicity (they elicit an antibody response) [goid 15643] [evidence IEA]; Interacting selectively with a toxin, a poisonous substance that causes damage to biological systems. Toxins are differentiated from simple chemical poisons and vegetable alkaloids by their high molecular weight and antigenicity (they elicit an antibody response) [goid 15643] [evidence ISS];  [goid 17081] [evidence IEA];  [goid 17081] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence IMP]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]	NARAD; BTX; nAChRa7	NARAD; BTX; nAChRa7
Rattus norvegicus	RefSeq	GI_62658746	ILMN_275095	ALKBH4_PREDICTED	XM_001077092.1	XM_001077092.1		288587	109497174	XM_001077092.1	Alkbh4_predicted	XP_001077092.1	ILMN_1649785	0001050184	S	605	CTGCTGCTCTGCCCAGTCCCCTCTGTTGGACCGGATGCTTTTGAGGGCAA				12q12	PREDICTED: Rattus norvegicus alkB, alkylation repair homolog 4 (E. coli) (predicted) (Alkbh4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643823-S	ILMN_66856	S100A13_PREDICTED	XM_215607.3	XM_215607.3		295213	109465106	XM_215607.3	S100a13_predicted	XP_215607.1	ILMN_1367541	0006180370	S	149	CCTTTGCAGGGCGGGAAGGACGGAAAGGTAGCCTGAGCACCAACGAATTT	2	+	182791173-182791222	2q34	PREDICTED: Rattus norvegicus S100 calcium binding protein A13 (predicted) (S100a13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666306	ILMN_285173	OSTM1	NM_001029925.1	NM_001029925.1		499474	71361640	NM_001029925.1	Ostm1	NP_001025096.1	ILMN_1649993	0003120253	S	1044	CTGAAGCCTGCAAAACGGGACTGGACCGCACACCACGCCAATCAGTGGTT				20q13	Rattus norvegicus osteopetrosis associated transmembrane protein 1 (Ostm1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116111	MGC116111
Rattus norvegicus	RefSeq	GI_27465530-S	ILMN_300070	BDKRB2	NM_173100.1	NM_173100.1		25245	27465530	NM_173100.1	Bdkrb2	NP_775123.1	ILMN_1370361	0004610397	S	1284	TGCAGGATTGGGCGGGGAACAAGCAGTGAACACAAGCCATCGGGCAGGAC	6	+	129748707-129748756	6q32	Rattus norvegicus bradykinin receptor B2 (Bdkrb2), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence TAS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with bradykinin to initiate a change in cell activity [goid 4947] [evidence IEA]	B2BRA; B2BKR	B2BRA; B2BKR
Rattus norvegicus	RefSeq	GI_47577904-S	ILMN_292186	OLR1151	NM_001000432.1	NM_001000432.1		300411	47577904	NM_001000432.1	Olr1151	NP_001000432.1	ILMN_1358731	0005270148	S	684	GCCATCATCAGGAGGTAGGCATAAAACTTTCTCAACCTGTGGGTCTCATC	8	-	17845444-17845493	8q13	Rattus norvegicus olfactory receptor 1151 (Olr1151), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1151	Olr1151
Rattus norvegicus	RefSeq	GI_62643943-S	ILMN_293558	RGD1563314_PREDICTED	XR_008883.1	XR_008883.1		295295	109466990	XR_008883.1	RGD1563314_predicted		ILMN_1354009	0005080673	S	552	CTACCCATGGCAACAGCCTTTGGGGCATCAGCAAACATCTGGAGGGTCTC				2q34	PREDICTED: Rattus norvegicus similar to phosphoglycerate mutase (EC 5.4.2.1) B chain - rat (predicted) (RGD1563314_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639327-S	ILMN_49669	LOC499123	XM_574417.1	XM_574417.1		499123	62639327	XM_574417.1	LOC499123	XP_574417.1	ILMN_1351612	0005720632	S	1687	GCAGTCAGGGTGGAAAAAAGCCCTTAGTCAGAGGCAAAATCTCCTCGAAC				1q21	PREDICTED: Rattus norvegicus similar to zinc finger protein 569 (LOC499123), mRNA.					
Rattus norvegicus	RefSeq	GI_9506396-S	ILMN_276118	ARC	NM_019361.1	NM_019361.1		54323	9506396	NM_019361.1	Arc	NP_062234.1	ILMN_2039673	0001170392	S	2712	GGCCATGTTGAGGTTCCTCCATCTGCCTGGTCCATTGGTGTTCTGAGACC	7	-	112772201-112772250	7q34	Rattus norvegicus activity-regulated cytoskeleton-associated protein (Arc), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEP]		rg3.1	rg3.1
Rattus norvegicus	RefSeq	GI_62653585-S	ILMN_60353	BCL9L_PREDICTED	XM_217124.3	XM_217124.3		300673	62653585	XM_217124.3	Bcl9l_predicted	XP_217124.2	ILMN_1372748	0004200086	S	6722	TTACTTCCCAGGAGAGCCCCTCACCCGCCACTGGTCAGACTGAAGCCATA				8q22	PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 9-like (predicted) (Bcl9l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665703-S	ILMN_288337	RGD1564450_PREDICTED	XM_001078024.1	XM_001078024.1		294291	109509822	XM_001078024.1	RGD1564450_predicted	XP_001078024.1	ILMN_1372525	0002630438	S	367	ATGAGTAACACGACAGTGCCCAATGCCCCCCAGGCCAACAGCGACTCCAT				20p12	PREDICTED: Rattus norvegicus RGD1564450 (predicted) (RGD1564450_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393357-S	ILMN_292111	FH1	NM_017005.1	NM_017005.1		24368	8393357	NM_017005.1	Fh1	NP_058701.1	ILMN_1364235	0002570020	S	1261	TGTGTTGCACTCAGCCAGGCTACTGGGAGATGCTTCAGTGTCCTTCACAG	13	-	91332304-91332353	13q25	Rattus norvegicus fumarate hydratase 1 (Fh1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; Any of the heteromeric enzymes that act in the TCA cycle [goid 45239] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate [goid 6106] [evidence IEA]; The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate [goid 6106] [evidence TAS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence IEA]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: (S)-malate = fumarate + H2O [goid 4333] [evidence IEA]; Catalysis of the reaction: (S)-malate = fumarate + H2O [goid 4333] [evidence IMP]; Catalysis of the reaction: (S)-malate = fumarate + H2O [goid 4333] [evidence ISS]	MGC105468; Fh	MGC105468; Fh
Rattus norvegicus	RefSeq	GI_62644087-S	ILMN_302441	VTCN1	NM_001024244.1	NM_001024244.1		295322	66730410	NM_001024244.1	Vtcn1	NP_001019415.1	ILMN_1353007	0001990435	S	787	TGCCAAAGCCACAGGGGACATCAAAGTGACAGATTCAGAGGTCAAAAGGC	2	+	195933571-195933602:195938176-195938193	2q34	Rattus norvegicus V-set domain containing T cell activation inhibitor 1 (Vtcn1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation [goid 50868] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation [goid 50868] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]	RGD1311204	RGD1311204
Rattus norvegicus	RefSeq	GI_62641010	ILMN_285658	RGD1305211_PREDICTED	XM_001066655.1	XM_001066655.1		365314	109462499	XM_001066655.1	RGD1305211_predicted	XP_001066655.1	ILMN_1650462	0001340735	S	537	CTACCGACCTCACGTGGTTTGAGCACATCGTGCCTTGTGGACTGGTTGGG				1q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610209A20 (predicted) (RGD1305211_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652295-I	ILMN_62329	PTDSS1_PREDICTED	XM_576244.1	XM_576244.1		314553	62652295	XM_576244.1	Ptdss1_predicted	XP_576244.1	ILMN_1376151	0006290095	S	52	TGGTGGGGTGAGGACTCCGCTATCTCGCCCTGCTAGGGCCGACCGCCTGA				7q22	PREDICTED: Rattus norvegicus phosphatidylserine synthase 1 (predicted) (Ptdss1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654804-S	ILMN_53069	LOC501113	XM_576531.1	XM_576531.1		501113	62654804	XM_576531.1	LOC501113	XP_576531.1	ILMN_1362736	0006400576	S	487	GGCTATGATCAAAAACTCAGGGGACAACAGATGTTGGCGAGGATGTGGAG					PREDICTED: Rattus norvegicus similar to ORF4 (LOC501113), mRNA.					
Rattus norvegicus	RefSeq	GI_62652825-S	ILMN_277668	TCF20_MAPPED	XM_001077683.1	XM_001077683.1		366964	109482639	XM_001077683.1	Tcf20_mapped	XP_001077683.1	ILMN_1368007	0006520102	S	6847	GAGCACTGTGGCCCCACCCAGTAGGTAGAGAAGCTCCATAGCAACAGCTG				7q34	PREDICTED: Rattus norvegicus transcription factor 20 (mapped) (Tcf20_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62653777-S	ILMN_268169	LRRC49_PREDICTED	XM_001073479.1	XM_001073479.1		300763	109484802	XM_001073479.1	Lrrc49_predicted	XP_001073479.1	ILMN_1359304	0002230152	S	2689	TCTTTCCCACGCATGCTGACCACACAACCTTGGGGACCCGAGCAGCAACT				8q24	PREDICTED: Rattus norvegicus leucine rich repeat containing 49 (predicted) (Lrrc49_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643781-S	ILMN_64612	KRTCAP2_PREDICTED	XM_215616.4	XM_215616.4		295243	109465055	XM_215616.4	Krtcap2_predicted	XP_215616.4	ILMN_1356998	0002190427	S	416	TACAGCTCCAGCCCTCACGCCGGCCAAAGTCACTGGCAAGAGCAAGAAGA	2	+	181420967-181421016	2q34	PREDICTED: Rattus norvegicus keratinocyte associated protein 2 (predicted) (Krtcap2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663847-S	ILMN_49548	RGD1560737_PREDICTED	XM_225445.4	XM_225445.4		307026	109505046	XM_225445.4	RGD1560737_predicted	XP_225445.4	ILMN_1363967	0001580129	S	731	CCCAGACTGTCCACACTCCAGGGTACAACCCCAAGGCTGTCTACACTCCA	17	-	61045420-61045469	17q12.1	PREDICTED: Rattus norvegicus similar to elicitor-like mating protein M81 (predicted) (RGD1560737_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948441-S	ILMN_276546	TSPAN1	NM_001004236.1	NM_001004236.1		298436	51948441	NM_001004236.1	Tspan1	NP_001004236.1	ILMN_1367073	0001850576	S	943	ACGTCATTTGGGCTGGAGTGGATCTGCCTTTGCTGCTCTGGACTTCGGGC	5	-	136442334-136442383	5q36	Rattus norvegicus tetraspanin 1 (Tspan1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93753	MGC93753
Rattus norvegicus	RefSeq	GI_57114275-S	ILMN_271039	V1RE16	NM_001008966.1	NM_001008966.1		494308	57114275	NM_001008966.1	V1re16	NP_001008966.1	ILMN_1349346	0006290369	S	623	ACCGACACAAGCAGAGGGTTCAACACATTCACAGGTCTCATGGTTCCAGC	1	+	63154900-63154949	1q12	Rattus norvegicus vomeronasal 1 receptor, E16 (V1re16), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18543368-S	ILMN_285954	FGF23	NM_130754.1	NM_130754.1		170583	18543368	NM_130754.1	Fgf23	NP_570110.1	ILMN_1366217	0006020450	S	113	GCCTGACCCACCTGTACACAGCTACAGCCAGGAACAGCTATCACCTACAG	4	+	163468716-163468765	4q42	Rattus norvegicus fibroblast growth factor 23 (Fgf23), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite [goid 44421] [evidence IDA]	The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEP]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone mineralization [goid 30500] [evidence IEA]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence ISS]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence IEA]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence IEP]	Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639371-S	ILMN_51902	ATP4A	XM_341834.3	XM_341834.3		24216	109458562	XM_341834.3	Atp4a	XP_341835.2	ILMN_1364942	0006370010	S	2901	CGCCATCGTGTTTCAGGTCTGCATTGGCTGCTTCCTGTGCTACTGCCCAG	1	+	85768737-85768786	1q21	PREDICTED: Rattus norvegicus ATPase, H+/K+ exchanging, alpha polypeptide (Atp4a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion [goid 1696] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that modulates the frequency, rate or extent of proton transport into, out of, within or between cells [goid 10155] [evidence ISS]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that reduces the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 45851] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in) [goid 8900] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645102-S	ILMN_272949	LOC499796	XM_001064880.1	XM_001064880.1		499796	109469904	XM_001064880.1	LOC499796	XP_001064880.1	ILMN_1348797	0003520168	S	1710	CGGGTCTCCTGCCCTGTATGCCGGTCAAGTTGCAGCTGAGTCTGTGAAGT				3q12	PREDICTED: Rattus norvegicus LRRGT00012 (LOC499796), mRNA.					
Rattus norvegicus	RefSeq	GI_62652378-S	ILMN_280427	RGD1309489_PREDICTED	XR_008138.1	XR_008138.1		314915	109482187	XR_008138.1	RGD1309489_predicted		ILMN_1363576	0005340687	S	2586	CAGTACATTCTCTGCCAGTCCTTTGTGTCCAAGAGGTTGGTGAGGCCCAG				7q31	PREDICTED: Rattus norvegicus similar to Est1p-like protein B (predicted) (RGD1309489_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652376-S	ILMN_280427	RGD1309489_PREDICTED	XR_008138.1	XR_008138.1		314915	109482187	XR_008138.1	RGD1309489_predicted		ILMN_1354872	0000780152	S	13	CAGGAGGAAACCCTGAGAGCCACATTCCTCTACCAGGAGGTCTGCTTGGC				7q31	PREDICTED: Rattus norvegicus similar to Est1p-like protein B (predicted) (RGD1309489_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_10732860-S	ILMN_301175	DNAJB9	NM_012699.2	NM_012699.2		24908	10732860	NM_012699.2	Dnajb9	NP_036831.2	ILMN_1355315	0000580368	S	1249	CTCTGGGAACTTAAAACTACACAGCCTATGGTCCCTGTAACTCGGGCTAC	6	-	63583661-63583710	6q21	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 9 (Dnajb9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence TAS]	Modulates the activity of a molecular chaperone [goid 30188] [evidence IDA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	Mdg1	Mdg1
Rattus norvegicus	RefSeq	GI_62652680-S	ILMN_58679	ZFP7_PREDICTED	XM_235457.3	XM_235457.3		315101	62652680	XM_235457.3	Zfp7_predicted	XP_235457.3	ILMN_1360367	0000840369	S	1801	GCGAGTGTGGAAAGGCCTTCAGCCGGAGCTCCTACCTTATTGAACACCAG					PREDICTED: Rattus norvegicus zinc finger protein 7 (predicted) (Zfp7_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.23969	ILMN_161575	RN.23969	Rn.23969		Rn.23969		14944047	BI287946			ILMN_1530165	0001740097	S	49	AAAAATCGTTAAAATAAATTACACCTGCCTTCACCACCAGTACATGCATA					UI-R-CX0s-ccw-b-09-0-UI.s1 UI-R-CX0s Rattus norvegicus cDNA clone UI-R-CX0s-ccw-b-09-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62663064	ILMN_279514	LOC680045	XM_001055471.1	XM_001055471.1		680045	109503663	XM_001055471.1	LOC680045	XP_001055471.1	ILMN_1651175	0006590333	S	350	CTGGGCACCCTGCGAACTGGAATTGAGCCAGCAGCCACCTCTGGAATCAT	16|NW_047483.1	+	230389-230438		PREDICTED: Rattus norvegicus hypothetical protein LOC680045 (LOC680045), mRNA.					
Rattus norvegicus	RefSeq	GI_62655732-S	ILMN_68472	ZNF174_PREDICTED	XM_220214.2	XM_220214.2		287074	62655732	XM_220214.2	Znf174_predicted	XP_220214.2	ILMN_1359979	0004540181	S	1084	TTCGCCAAAGCTCAAACCTCCACCAGCACCATAGGCTCCACCACGGGAAC				10q12	PREDICTED: Rattus norvegicus zinc finger protein 174 (predicted) (Znf174_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393973-S	ILMN_282008	PLA2G5	NM_017174.1	NM_017174.1		29354	8393973	NM_017174.1	Pla2g5	NP_058870.1	ILMN_1362771	0000130368	S	1469	AGCAGGGATGGTAGGCTGCATGAGAGTGTGTCTCAGAAAGAACCACCTGG	5	-	157620004-157620053	5q36	Rattus norvegicus phospholipase A2, group V (Pla2g5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate; requires Ca2+ [goid 47498] [evidence IDA]	MGC93513	MGC93513
Rattus norvegicus	RefSeq	GI_6981563-S	ILMN_279943	SMO	NM_012807.1	NM_012807.1		25273	6981563	NM_012807.1	Smo	NP_036939.1	ILMN_1369634	0006620086	S	2142	TCGGCAGAAGTGCCTAGTAGCTGCAAATGCCTGGGGAACAGGAGAGCCCT	4	+	56645331-56645380	4q22	Rattus norvegicus smoothened homolog (Drosophila) (Smo), mRNA.	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence IEA]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process whose specific outcome is the progression of the facial nerve over time, from its formation to the mature structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives off nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities [goid 21561] [evidence IEP]; The process by which the anatomical structure of the cranial nerves are generated and organized. Morphogenesis pertains to the creation of form. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function [goid 21696] [evidence IEA]; The process by which the anatomical structure of the cranial nerves are generated and organized. Morphogenesis pertains to the creation of form. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function [goid 21696] [evidence ISS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened in granule cells that contributes to the regulation of proliferation of the cells [goid 21938] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened in granule cells that contributes to the regulation of proliferation of the cells [goid 21938] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence ISS]; The regrowth of neuronal processes such as axons or dendrites following their loss or damage [goid 31102] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus [goid 42307] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43392] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43392] [evidence ISS]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence IEA]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4926] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Smoh	Smoh
Rattus norvegicus	RefSeq	GI_62645548-S	ILMN_287756	RYR3	XM_001080527.1	XM_001080527.1		170546	109470545	XM_001080527.1	Ryr3	XP_001080527.1	ILMN_1370859	0005290692	S	6148	GGCCAGATTCGGTCCCTGCTTAGTGTCAGGATGGGGAGAGAAGAGGAGCT				3q34	PREDICTED: Rattus norvegicus ryanodine receptor 3 (Ryr3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645546-S	ILMN_287756	RYR3	XM_001080527.1	XM_001080527.1		170546	109470545	XM_001080527.1	Ryr3	XP_001080527.1	ILMN_1356242	0000670497	S	14259	AAGAGCAGGTGGCGGCATTGGTGACGAAATTGAAGATCCCGCTGGTGACC				3q34	PREDICTED: Rattus norvegicus ryanodine receptor 3 (Ryr3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645550-S	ILMN_287756	RYR3	XM_001080527.1	XM_001080527.1		170546	109470545	XM_001080527.1	Ryr3	XP_001080527.1	ILMN_1370932	0004050577	S	2290	CTGCTGAAGTCAGATGATGTGGTGAGCTGCTGCCTTGACCTTGGAGTACC				3q34	PREDICTED: Rattus norvegicus ryanodine receptor 3 (Ryr3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules) [goid 30314] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640889-S	ILMN_277942	EED_PREDICTED	XM_001061674.1	XM_001061674.1		293104	109462412	XM_001061674.1	Eed_predicted	XP_001061674.1	ILMN_1350510	0002970440	S	1779	CATAGCTGTCTGCGATGATGCCAGCATTTGGCGTTGGGATCGACTTCGAT				1q32	PREDICTED: Rattus norvegicus embryonic ectoderm development (predicted) (Eed_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641972-S	ILMN_67562	LOC293679	XM_215142.2	XM_215142.2		293679	62641972	XM_215142.2	LOC293679	XP_215142.2	ILMN_1360058	0002640441	S	228	CCAGGGTTTGCGGGATTCGTGATGGTGACAGAAGAGATGGGAGAGGGGCT					PREDICTED: Rattus norvegicus similar to AYP1 (predicted) (LOC293679), mRNA.					
Rattus norvegicus	RefSeq	GI_6981023-S	ILMN_66660	HMBS	NM_013168.1	NM_013168.1		25709	6981023	NM_013168.1	Hmbs	NP_037300.1	ILMN_1353365	0002680463	S	1052	ATCCTAGATGTTGCACGGCAGCTTAATGATGTGCGCTAACTGGCGACGTC				8q22	Rattus norvegicus hydroxymethylbilane synthase (Hmbs), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next [goid 33014] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]	Catalysis of the reaction: 4 porphobilinogen + H2O = hydroxymethylbilane + 4 NH3 [goid 4418] [evidence IEA]; Catalysis of the reaction: 4 porphobilinogen + H2O = hydroxymethylbilane + 4 NH3 [goid 4418] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	hemC; MGC108753; PBG-D; PBGD	hemC; MGC108753; PBG-D; PBGD
Rattus norvegicus	RefSeq	GI_62649223-S	ILMN_266301	MTAP_PREDICTED	XM_001055425.1	XM_001055425.1		298227	109476737	XM_001055425.1	Mtap_predicted	XP_001055425.1	ILMN_1352434	0002850736	S	1120	GGCGGTATGCTGCAGATGCTTGCCTCTTCCAAGGACTCTGGACAATTGGC				5q32	PREDICTED: Rattus norvegicus methylthioadenosine phosphorylase (predicted) (Mtap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651123-S	ILMN_48285	LOC500702	XM_576084.1	XM_576084.1		500702	62651123	XM_576084.1	LOC500702	XP_576084.1	ILMN_1365147	0000540722	S	398	CTCCAACTCTCCGTGTAAGGATGAAAATTGGGTGCCTGGTGGTGGGATGC					PREDICTED: Rattus norvegicus similar to LRRGT00051 (LOC500702), mRNA.					
Rattus norvegicus	RefSeq	GI_18959225-S	ILMN_274417	SVAL2	NM_133291.1	NM_133291.1		84605	18959225	NM_133291.1	Sval2	NP_579825.1	ILMN_1357418	0000430279	S	69	GGAGACTGCCTATGGTCAGGACATTTGGAGCAATCCACTTTCACTAGAAC	4	+	69666176-69666202:69667596-69667618	4q23	Rattus norvegicus seminal vesicle antigen-like 2 (Sval2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			SLP-M	SLP-M
Rattus norvegicus	RefSeq	GI_62660154-S	ILMN_50038	LOC501888	XM_577308.1	XM_577308.1		501888	62660154	XM_577308.1	LOC501888	XP_577308.1	ILMN_1358620	0003290402	S	1158	CTGGGCCCCTGTGGGCAGCAAAGGAGGAGGGACATAAAATACCACAGCGA					PREDICTED: Rattus norvegicus similar to SP-10 (LOC501888), mRNA.					
Rattus norvegicus	RefSeq	GI_62647673-S	ILMN_54711	RGD1561494_PREDICTED	XM_575577.2	XM_575577.2		500226	109472234	XM_575577.2	RGD1561494_predicted	XP_575577.1	ILMN_1364703	0001340132	S	1175	GACCTTGCTGAGATCCTGAGATTTGGCAGTGTCTGAGAGTGGAGCAGCGG	4	-	117364129-117364143:117364144-117364178	4q34	PREDICTED: Rattus norvegicus similar to D3Mm3e (predicted) (RGD1561494_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17865326-S	ILMN_267837	FETUB	NM_053348.1	NM_053348.1		83928	17865326	NM_053348.1	Fetub	NP_445800.1	ILMN_1372913	0001400070	S	1304	TGGGAGGTGGTGGGCATTGGGAAGGCACAGACAATCAAATGTAGACCGGC	11	-	80276886-80276935	11q23	Rattus norvegicus fetuin B (Fetub), mRNA.			 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641893-S	ILMN_63803	LOC293745	XM_219592.3	XM_219592.3		293745	62641893	XM_219592.3	LOC293745	XP_219592.3	ILMN_1361336	0003850465	S	210	CCCTTACTCCCAAGGACCTTCTGGTGGGGGGAGAGAATGTTAGAGCAACA					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC293745), mRNA.					
Rattus norvegicus	RefSeq	GI_62645787-A	ILMN_281407	PLUNC	NM_172031.1	NM_172031.1		246238	25282404	NM_172031.1	Plunc	NP_742028.1	ILMN_1376563	0004730102	S	925	CCTCTTGCCCAGTTTCCCATGGCTCACAGAAAGGGACCCACGTCCTGGAA	3	+	144535469-144535518	3q41	Rattus norvegicus palate, lung, and nasal epithelium associated (Plunc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IDA]		Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718684	ILMN_53297	LOC503394	XM_578932.1	XM_578932.1		503394	62718684	XM_578932.1	LOC503394	XP_578932.1	ILMN_1650621	0006220707	S	302	CTTCCAACAGGGTGGTAGGCGGGCGCTCAAGCGTTGGTGGAGCAATATGT					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503394), mRNA.					
Rattus norvegicus	RefSeq	GI_57528168-S	ILMN_266955	FAM33A	NM_001009624.1	NM_001009624.1		287598	57528168	NM_001009624.1	Fam33a	NP_001009624.1	ILMN_1374336	0005340358	S	810	GCTCTGGCTGGCCCTGGAGCCCTCTATGTAGACCAGACTAGCACTGAATC	10	+	75400509-75400558	10q26	Rattus norvegicus family with sequence similarity 33, member A (Fam33a), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]		Fam33a; MGC109093	Fam33a; MGC109093
Rattus norvegicus	RefSeq	GI_62718792-S	ILMN_62674	LOC367448	XM_346141.2	XM_346141.2		367448	62718792	XM_346141.2	LOC367448	XP_346142.2	ILMN_1368261	0000870066	S	432	GTGACAGGTGGATCCATGAGCAAGAGGCCACACTTCAGGCCAAATCCATA					PREDICTED: Rattus norvegicus hypothetical LOC367448 (LOC367448), mRNA.					
Rattus norvegicus	RefSeq	GI_47577722-S	ILMN_299090	OLR631	NM_001000339.1	NM_001000339.1		295848	47577722	NM_001000339.1	Olr631	NP_001000339.1	ILMN_1367856	0004560576	S	420	TGTTCTTATCTGGGCTACCTGGGTTGGTGGTGTTGTCCACTCATTTCCCC	3	-	72328271-72328320	3q24	Rattus norvegicus olfactory receptor 631 (Olr631), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr631; ratchr3-72225112-72224192_ORF	Olr631; ratchr3-72225112-72224192_ORF
Rattus norvegicus	RefSeq	GI_62667616	ILMN_49556	LOC501666	XM_577062.1	XM_577062.1		501666	62667616	XM_577062.1	LOC501666	XP_577062.1	ILMN_1649905	0004920017	S	436	CAGAATACAAGAGACAGAAGAGAGAACCTCAGGAGCAGAAGATTCCATAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501666), mRNA.					
Rattus norvegicus	RefSeq	GI_62718588-S	ILMN_70201	LOC501431	XM_576841.1	XM_576841.1		501431	62718588	XM_576841.1	LOC501431	XP_576841.1	ILMN_1349176	0003060685	S	12	CCTTCAGTGCCTTTTGGGTTCACAAACAGGCATGTTTCACCAGCTGCTCC				15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C (LOC501431), mRNA.					
Rattus norvegicus	RefSeq	GI_16758765-S	ILMN_288327	JDP2	NM_053894.1	NM_053894.1		116674	16758765	NM_053894.1	Jdp2	NP_446346.1	ILMN_1371286	0004540438	S	535	CCGGAACAAGAAGAAGGAGCGCACGGAGTTCCTGCAGAGGGAGTCAGAGA	6	+	109734992-109735031:109740069-109740078	6q31	Rattus norvegicus Jun dimerization protein 2 (Jdp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Jdp2	Jdp2
Rattus norvegicus	Unigene	Rn.41133	ILMN_161415	RN.41133	Rn.41133		Rn.41133		49587829	CO405913			ILMN_1530329	0001770136	S	694	ACAAATGTATCATCATCCACCAGAAGAGATCTCCCACATATCTCACTAGT					AGENCOURT_27849761 NIH_MGC_252 Rattus norvegicus cDNA clone IMAGE:7310963 5', mRNA					
Rattus norvegicus	RefSeq	GI_62656121-S	ILMN_49367	LOC287338	XM_220490.3	XM_220490.3		287338	62656121	XM_220490.3	LOC287338	XP_220490.3	ILMN_1366525	0001240112	S	1221	ACCAGCCCTGCCTACATATCTGGAAGCCTGCTGCTACCTCTGCAGCAGCT				10q22	PREDICTED: Rattus norvegicus similar to Alpha enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC287338), mRNA.					
Rattus norvegicus	RefSeq	GI_62642487-S	ILMN_66758	LOC499375	XM_579954.1	XM_579954.1		499375	62642487	XM_579954.1	LOC499375	XP_579954.1	ILMN_1358320	0001170563	S	79	CCAGAGCCCGTGGTCATCAGAGTCACTTGGAGAGAGTTCTAAAGCAGAGG					PREDICTED: Rattus norvegicus LOC499375 (LOC499375), mRNA.					
Rattus norvegicus	RefSeq	GI_62641209-S	ILMN_269184	ACSM3	NM_033231.1	NM_033231.1		24763	65301415	NM_033231.1	Acsm3	NP_150234.1	ILMN_1351101	0003710576	S	556	CCATCTCACCTCCTTTCCATTTCCATCTACCCACCAGAAGGCTGGATTGG	1	+	178063620-178063669	1q35	Rattus norvegicus acyl-CoA synthetase medium-chain family member 3 (Acsm3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of a long-chain carboxylic acid to an acceptor, coupled to the hydrolysis of ATP [goid 15645] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + an acid + CoA = AMP + diphosphate + an acyl-CoA [goid 47760] [evidence IEA]	Sa	Sa
Rattus norvegicus	RefSeq	GI_48675864-S	ILMN_297952	PDP2	NM_145091.3	NM_145091.3		246311	48675864	NM_145091.3	Pdp2	NP_659559.2	ILMN_1362620	0005270253	S	3361	GGCTGCCAGTCTCAAAATCCCGAGTTCCATCCGTGGGACTTGCGTGATGA	19	-	306411-306460	19p14	Rattus norvegicus pyruvate dehydrogenase phosphatase isoenzyme 2 (Pdp2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEP]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]; A mitochondrial complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex [goid 19910] [evidence TAS]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; Series of processes that involve carbohydrate sensing, carbohydrate transportation and carbohydrate metabolism which lead to the utilization of carbohydrates [goid 9758] [evidence TAS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IC ]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the removal of a serine- or threonine-bound phosphate group from a protein; action dependent on magnesium [goid 4724] [evidence IDA]; Catalysis of the reaction: [pyruvate dehydrogenase (lipoamide)] phosphate + H2O = [pyruvate dehydrogenase (lipoamide)] + phosphate [goid 4741] [evidence IDA]; Catalysis of the reaction: [pyruvate dehydrogenase (lipoamide)] phosphate + H2O = [pyruvate dehydrogenase (lipoamide)] + phosphate [goid 4741] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51036249-A	ILMN_280602	PARD6A	NM_001003653.1	NM_001003653.1		307799	51036245	NM_001003653.1	Pard6a	NP_001003653.1	ILMN_1376389	0005720736	S	1083	GTGCAGCCTTTGTCACTGCTGCCCGGACTTTCCAGTTGGGGAGGGAGATT	19	+	35535606-35535655	19q12	Rattus norvegicus par-6 (partitioning defective 6,) homolog alpha (C. elegans) (Pard6a), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The maintenance of junctions between cells [goid 45217] [evidence ISS]; The maintenance of junctions between cells [goid 45217] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence ISS]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Par-6a; Par6a	Par-6a; Par6a
Rattus norvegicus	RefSeq	GI_62646905-S	ILMN_278623	LOC500046	XM_001061323.1	XM_001061323.1		500046	109471779	XM_001061323.1	LOC500046	XP_001061323.1	ILMN_1365473	0001230433	S	4407	CCACATGTAGGGAAGAATAACACCGAAGTTCTCTACCGGGAGAAGCGGGG	4	+	48566991-48567040	4q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21986 (LOC500046), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62653730-S	ILMN_266636	PPCDC_PREDICTED	XM_001074230.1	XM_001074230.1		363069	109484782	XM_001074230.1	Ppcdc_predicted	XP_001074230.1	ILMN_1369486	0001240019	S	424	CTGGGACCTCAACAAGCCTCTACTCTTCTGCCCCGCCATGAACACTGCCA				8q24	PREDICTED: Rattus norvegicus phosphopantothenoylcysteine decarboxylase (predicted) (Ppcdc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648584-S	ILMN_289403	NCOA6IP_PREDICTED	XM_001069069.1	XM_001069069.1		312947	109476079	XM_001069069.1	Ncoa6ip_predicted	XP_001069069.1	ILMN_1351493	0002370064	S	2641	CCAAGAAATGCTGATGTTGACCAGGTGGCATCGTTGGCTGGGCCTGGAGG				5q12	PREDICTED: Rattus norvegicus nuclear receptor coactivator 6 interacting protein (predicted) (Ncoa6ip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61097942-S	ILMN_302025	ARTN	NM_053397.1	NM_053397.1		362572	61097942	NM_053397.1	Artn	NP_445849.1	ILMN_1366677	0004850403	S	1072	GACAGAGCCTGGAAAGATGACCGAACCACTGACCAACAGTCCCAAGGTGT	5	-	138391190-138391239	5q36	Rattus norvegicus artemin (Artn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEP]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16923955-S	ILMN_278800	BARHL1	NM_057109.1	NM_057109.1		117232	16923955	NM_057109.1	Barhl1	NP_476450.1	ILMN_1359620	0000130014	S	2201	ACCCATGAGCCCGTGACCGTGTCCGTGAATCAGTGAGTCTGTGGCCTGTG	3	-	7917983-7918032	3p12	Rattus norvegicus BarH-like homeobox 1 (Barhl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Barhl2; Mbh2	Barhl2; Mbh2
Rattus norvegicus	RefSeq	GI_62654570-S	ILMN_292345	LOC686038	XM_001066294.1	XM_001066294.1		686038	109483331	XM_001066294.1	LOC686038	XP_001066294.1	ILMN_1374383	0003390278	S	96	TGGACAAAGAAAGGTGGCCTGGGGAATGCGGAATGATGGGAGACTGACAT	8	-	42245918-42245936:42246975-42247005	8q22	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC686038), mRNA.					
Rattus norvegicus	RefSeq	GI_62639424-S	ILMN_54420	ZNF507_PREDICTED	XM_218515.4	XM_218515.4		292816	109458598	XM_218515.4	Znf507_predicted	XP_218515.2	ILMN_1352689	0000130484	S	2754	GAGAACTGGCCCTACCACAGGCAGTCCAGAAAACTTGGTGTCCTCCTCGG	1	-	88333951-88334000	1q21	PREDICTED: Rattus norvegicus zinc finger protein 507 (predicted) (Znf507_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090320-I	ILMN_266655	MAF	XM_001081244.1	XM_001081244.1		303439	109491641	XM_001081244.1	Maf	XP_001081244.1	ILMN_1375780	0006840068	I	2297	GGGAATTTGTTCAGTGGTCAAGGGAACCCAAGGACAACACCAGCCAGGCC				10q26	PREDICTED: Rattus norvegicus monocyte to macrophage differentiation-associated (Maf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]; The synthesis of RNA on a template of DNA [goid 6351] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence NAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of chondrocyte differentiation [goid 32330] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate [goid 48468] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642057	ILMN_262607	ANKRD15	XM_001055725.1	XM_001055725.1		309429	109459979	XM_001055725.1	Ankrd15	XP_001055725.1	ILMN_1651182	0005270390	S	5265	TGCGTCTAGGGAGGCAGAGTGTAGTTCTCCGTGTATTGCTACCGTGCCGC	1	+	228868123-228868172	1q51	PREDICTED: Rattus norvegicus ankyrin repeat domain 15 (Ankrd15), mRNA.					
Rattus norvegicus	RefSeq	GI_62644565	ILMN_285512	USP33	XM_001080019.1	XM_001080019.1		310960	109467783	XM_001080019.1	Usp33	XP_001080019.1	ILMN_1650838	0000450403	S	3698	CCAAGTACAAACATGCAGGTGACAAAGTATGGAACAGCATTCATGGTGAC				2q45	PREDICTED: Rattus norvegicus ubiquitin specific peptidase 33 (Usp33), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The removal of one or more ubiquitin moieties from a protein [goid 16579] [evidence ISS]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664552-S	ILMN_64045	LOC498878	XM_574163.1	XM_574163.1		498878	62664552	XM_574163.1	LOC498878	XP_574163.1	ILMN_1360220	0000450097	S	1682	TCTGACACTTGCCGGAGAAAAAGCCTCCCGTGTGAAGCCAGCCCTCAAGT				18q12.1	PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498878), mRNA.					
Rattus norvegicus	RefSeq	GI_62650095-S	ILMN_296686	LOC690911	XR_006981.1	XR_006981.1		690911	109475764	XR_006981.1	LOC690911		ILMN_1361687	0000130685	S	10582	CCCTGTGGCCGTGACCAGGAGGATGTCGTAAGCCAGACCGAGTCCCTCAA	5	-	160361311-160361360	5q36	PREDICTED: Rattus norvegicus similar to Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein) (LOC690911), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650245-S	ILMN_294793	FAM82A	NM_001037200.1	NM_001037200.1		313840	81295354	NM_001037200.1	Fam82a	NP_001032277.1	ILMN_1375002	0004670500	S	1472	GTATGTGGCCAAGTGTTATGTTGATCTTGGGGAATCTCGGGAGGCTTGGA	6	+	2509111-2509123:2509221-2509257	6q11	Rattus norvegicus family with sequence similarity 82, member A (Fam82a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC116304	MGC116304
Rattus norvegicus	RefSeq	GI_62643201-S	ILMN_59003	RGD1309519_PREDICTED	XM_342213.3	XM_342213.3		361917	109464595	XM_342213.3	RGD1309519_predicted	XP_342214.3	ILMN_1371721	0001740010	S	801	CATGTTCTTCTGCCTACGGTGGAGCATCGGGAAGGTTGTGGACGTTGCAG	2	+	93406335-93406384	2q23	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14007 (predicted) (RGD1309519_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642561-S	ILMN_47722	LOC365491	XM_345051.2	XM_345051.2		365491	62642561	XM_345051.2	LOC365491	XP_345052.2	ILMN_1364563	0001190632	S	19	CAAAGGACCTGCAGCATCTGCGAGCTTATGCATACCTACAAATGAAGGGC					PREDICTED: Rattus norvegicus similar to Transcription initiation protein SPT4 homolog 1 (LOC365491), mRNA.					
Rattus norvegicus	RefSeq	GI_62642593-S	ILMN_50172	LOC499388	XM_574702.1	XM_574702.1		499388	62642593	XM_574702.1	LOC499388	XP_574702.1	ILMN_1358287	0004540086	S	898	GAAGACTCCCAGCTCAAAGGACCAGAACCCAAGCAACAGAAACCAAGACT					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC499388), mRNA.					
Rattus norvegicus	RefSeq	GI_62648301-S	ILMN_283766	PLEKHA5	XM_001073627.1	XM_001073627.1		246237	109474440	XM_001073627.1	Plekha5	XP_001073627.1	ILMN_1350365	0002190592	S	3153	CATGGCAAACCATCAGGCAGAAGGCCCCCCTGAGGAAGCAGAGAGTCTTC				4q44	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family A member 5 (Plekha5), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_24308489-S	ILMN_292326	KLHL12	NM_153730.1	NM_153730.1		266772	24308489	NM_153730.1	Klhl12	NP_714952.1	ILMN_1360572	0001410093	S	1628	TGACCCTATCATCGACAGCTGGGAAGTAGTGGCCTCCATGGGAACCCAGC	13	+	47433105-47433154	13q13	Rattus norvegicus kelch-like 12 (Drosophila) (Klhl12), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	C3ip1; MGC93127	C3ip1; MGC93127
Rattus norvegicus	RefSeq	GI_55926220-S	ILMN_63515	CLDN5	NM_031701.2	NM_031701.2		65131	82524854	NM_031701.2	Cldn5	NP_113889.1	ILMN_1352195	0003610369	S	1115	GTTCCTACTGAGTCCTGGGGAGTGCTGGATGCTGCCTTAATGTCCGGTGG	11|NW_047364.1	-	266942-266991		Rattus norvegicus claudin 5 (Cldn5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IPI]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IPI]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence NAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC95240	MGC95240
Rattus norvegicus	RefSeq	GI_62660796-S	ILMN_55788	LOC360980	XM_341256.2	XM_341256.2		360980	62660796	XM_341256.2	LOC360980	XP_341257.2	ILMN_1365017	0001050463	S	2920	GGTGTCTGTGTGAGGGTGGTGAAGGTGGTGGCAGATTAGATGGAGCAGCG				14q21	PREDICTED: Rattus norvegicus similar to novel protein similar to Tensin Tns (LOC360980), mRNA.					
Rattus norvegicus	RefSeq	GI_62339342-S	ILMN_275767	LOC680047	XM_001055473.1	XM_001055473.1		680047	109506475	XM_001055473.1	LOC680047	XP_001055473.1	ILMN_1360358	0001780537	S	2532	CCCATGGTCCCCAATGCTGGGATAGAAATTATGGAAAGTCCCCACTGCAG	18	+	30212112-30212161	18p11	PREDICTED: Rattus norvegicus similar to protocadherin beta 9 (LOC680047), mRNA.					
Rattus norvegicus	RefSeq	GI_62659018-S	ILMN_300556	RGD1562674_PREDICTED	XM_001080090.1	XM_001080090.1		288691	109497447	XM_001080090.1	RGD1562674_predicted	XP_001080090.1	ILMN_1370096	0000050088	S	2983	GGCTGTCCACACCTTCGACTTGTACCCCGTTACTCAGGCAGGATCAGGGA				12q16	PREDICTED: Rattus norvegicus similar to kinase suppressor of ras 2 (predicted) (RGD1562674_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653186-S	ILMN_62953	LOC500940	XM_576350.1	XM_576350.1		500940	62653186	XM_576350.1	LOC500940	XP_576350.1	ILMN_1354377	0003060672	S	1835	GTAAAGCCCAACATAAGGAGGCCAGCTATACCCTAGAAGAAGCAAGAAAC					PREDICTED: Rattus norvegicus similar to LRRGT00126 (LOC500940), mRNA.					
Rattus norvegicus	RefSeq	GI_62660275-S	ILMN_279503	RGD1560084_PREDICTED	XM_223280.3	XM_223280.3		289515	62660275	XM_223280.3	RGD1560084_predicted	XP_223280.2	ILMN_1358260	0006550450	S	273	CCCAGTACGACGACGCAGCAGAGCGACTGGACACTTAACATCACAGAAGC	14	-	18575781-18575782:18579003-18579050	14p22	PREDICTED: Rattus norvegicus similar to Epigen protein (predicted) (RGD1560084_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656581-S	ILMN_57142	RGD1307929	XM_220636.4	XM_220636.4		303280	109488562	XM_220636.4	RGD1307929	XP_220636.3	ILMN_1363971	0006980041	S	7041	CAAGCCTAGTATCCTGCTCCTTTGGGGCAACAGAAAGGGTGGGGGGATAG	10	-	64344894-64344943	10q25	PREDICTED: Rattus norvegicus similar to CG14967-PA (RGD1307929), mRNA.		A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]	Catalysis of the reaction: (S)-malate + acceptor = oxaloacetate + reduced acceptor [goid 8924] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648244-S	ILMN_277324	RGD1306750_PREDICTED	XM_001070549.1	XM_001070549.1		362451	109474362	XM_001070549.1	RGD1306750_predicted	XP_001070549.1	ILMN_1373854	0003360309	S	226	ACCGCAGTTGCAGCAGACAAAGCAGCCACAGAGGCCAGTCAAAGGACAGC				4q42	PREDICTED: Rattus norvegicus LOC362451 (predicted) (RGD1306750_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34860780-S	ILMN_59193	TP53RK_PREDICTED	XM_345470.1	XM_345470.1		366250	34860780	XM_345470.1	Tp53rk_predicted	XP_345471.1	ILMN_1358572	0006100671	S	691	AGTTAGATGAGGTGCGCCTGAGAGGGCGAAAGCGGTCCATGGTCGGATAG					PREDICTED: Rattus norvegicus TP53 regulating kinase (predicted) (Tp53rk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663971-S	ILMN_273680	PRTFDC1_PREDICTED	XM_001069324.1	XM_001069324.1		291355	109506153	XM_001069324.1	Prtfdc1_predicted	XP_001069324.1	ILMN_1370958	0007040576	S	1535	ACGTCCTTACACGGCTTCTCACACAATCCACGGTGCCATAGGAAGCAAGC				17q12.3	PREDICTED: Rattus norvegicus phosphoribosyl transferase domain containing 1 (predicted) (Prtfdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27710155-S	ILMN_64317	GPR101_PREDICTED	XM_229186.4	XM_229186.4		317608	109511271	XM_229186.4	Gpr101_predicted	XP_229186.4	ILMN_2040068	0007320136	S	1485	CATCATTTTCTCCTATGTGCTGTCTCTGGGGCCCTACTGCTTCCTGGCAG	X	-	142533341-142533390	Xq36	PREDICTED: Rattus norvegicus G protein-coupled receptor 101 (predicted) (Gpr101_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667469-S	ILMN_64317	GPR101_PREDICTED	XM_229186.4	XM_229186.4		317608	109511271	XM_229186.4	Gpr101_predicted	XP_229186.4	ILMN_2038828	0000780653	S	1275	GGCAAACACGGACCGCAGAGATGTCAATCAGTGCAACATTTACGTGGGCG	X	-	142533551-142533600	Xq36	PREDICTED: Rattus norvegicus G protein-coupled receptor 101 (predicted) (Gpr101_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659822-S	ILMN_284800	RGD1564553_PREDICTED	XM_001054923.1	XM_001054923.1		501872	109499056	XM_001054923.1	RGD1564553_predicted	XP_001054923.1	ILMN_1370938	0006760167	S	805	GAGCCCGTGACCACCATTTATTCCTCGGTGCAGCTTTATGAGAAGACGGG				13q24	PREDICTED: Rattus norvegicus similar to CD84 leukocyte antigen (predicted) (RGD1564553_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666268-S	ILMN_66172	RGD1311375_PREDICTED	XM_228301.4	XM_228301.4		309855	109509617	XM_228301.4	RGD1311375_predicted	XP_228301.4	ILMN_1374955	0002690446	S	878	CAGCGTGCATCGCGACTGGCTACTGTATATCATTCATGGGTTCTGCGGGC	20	-	45203721-45203770	20q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A530089I17 (predicted) (RGD1311375_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666266-S	ILMN_66172	RGD1311375_PREDICTED	XM_228301.4	XM_228301.4		309855	109509617	XM_228301.4	RGD1311375_predicted	XP_228301.4	ILMN_1368659	0003850576	S	2780	GATCTTCCAGGCCCACATCCAGGCCAGCCAAGGTATCATGCAGCCCCTTG	20	-	45123817-45123866	20q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A530089I17 (predicted) (RGD1311375_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_70794745	ILMN_279898	TAX1BP3	NM_001025419.1	NM_001025419.1		360564	70794745	NM_001025419.1	Tax1bp3	NP_001020590.1	ILMN_1530504	0003940176	S	924	TACACCTGTGGGTTTAGCTTTTGTATTTTTTAAGTCACAACTTTGATACA	10	+	60058384-60058433	10q24	Rattus norvegicus Tax1 (human T-cell leukemia virus type I) binding protein 3 (Tax1bp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656509-S	ILMN_279898	TAX1BP3	NM_001025419.1	NM_001025419.1		360564	70794745	NM_001025419.1	Tax1bp3	NP_001020590.1	ILMN_1352608	0002360121	S	854	TGGGTGCTGGCCTCCCCACAAGTTTCAAGACTGACATTTCAAGGCAGCTC	10	+	60058314-60058363	10q24	Rattus norvegicus Tax1 (human T-cell leukemia virus type I) binding protein 3 (Tax1bp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639188-S	ILMN_276794	LOC687052	XM_001070735.1	XM_001070735.1		687052	109461444	XM_001070735.1	LOC687052	XP_001070735.1	ILMN_1352206	0004760440	S	1393	CCAAGGGCACTGAGGTCTTTCCTCTGATTGGCTCCGTACTGCACGACCCT					PREDICTED: Rattus norvegicus similar to cytochrome P450, family 2, subfamily s, polypeptide 1 (LOC687052), mRNA.					
Rattus norvegicus	RefSeq	GI_62648938-S	ILMN_279283	RGD1310893_PREDICTED	XM_001071828.1	XM_001071828.1		362514	109476436	XM_001071828.1	RGD1310893_predicted	XP_001071828.1	ILMN_1355073	0002370403	S	1973	CCCAGTGTTGATGAGAGATTGTCTTGAGCTTGGTGGCTCCTCGGCCGTGC				5q22	PREDICTED: Rattus norvegicus similar to hypothetical protein 3010020C06 (predicted) (RGD1310893_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645594-S	ILMN_301965	CCDC32	NM_001024245.1	NM_001024245.1		296081	66730430	NM_001024245.1	Ccdc32	NP_001019416.1	ILMN_1375021	0006550176	S	713	AGAGCTGCCATGTGTGACTGTCCTGGATGAAGTGAGGGACCCAGTGTGCG	3	-	105523804-105523853	3q35	Rattus norvegicus coiled-coil domain containing 32 (Ccdc32), mRNA.			Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 46914] [evidence IEA]	Gm631	Gm631
Rattus norvegicus	RefSeq	GI_34868990-S	ILMN_58031	LOC298135	XM_233051.2	XM_233051.2		298135	34868990	XM_233051.2	LOC298135	XP_233051.2	ILMN_1364009	0004150717	S	2	CATCTCTGTAAGGACCTGGTTTGGGCGACTGTGTGTTCTGCTGGCTGCAC					PREDICTED: Rattus norvegicus hypothetical LOC298135 (LOC298135), mRNA.					
Rattus norvegicus	RefSeq	GI_19923709-S	ILMN_274787	NRGN	NM_024140.2	NM_024140.2		64356	19923709	NM_024140.2	Nrgn	NP_077054.1	ILMN_1367436	0002940398	S	1280	CCCCGTTGGGCTCCTGGGGTTGTGGCTGGAAGGTTTTTAATCTCTGCGTG	8	-	38790639-38790688	8q21	Rattus norvegicus neurogranin (Nrgn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]		Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	RC3	RC3
Rattus norvegicus	RefSeq	GI_62662279	ILMN_277925	SDCCAG3	NM_001013135.1	NM_001013135.1		306322	61557056	NM_001013135.1	Sdccag3	NP_001013153.1	ILMN_1651158	0002630184	S	308	ACTGAAGTTAAGGATGAGGCAGACTCTTGAGAACACGACCTGCCGCCGGG	3	-	4555053-4555073:4555074-4555102	3p13	Rattus norvegicus serologically defined colon cancer antigen 3 (Sdccag3), mRNA.					
Rattus norvegicus	RefSeq	GI_62649668-S	ILMN_64095	MYCBP_PREDICTED	XM_216518.3	XM_216518.3		298513	62649668	XM_216518.3	Mycbp_predicted	XP_216518.3	ILMN_1367434	0006860463	S	1440	TTCTTACCCAGACGCCTAGAAGCATCTTCCCTGCGGTACACTCGGAGCCC					PREDICTED: Rattus norvegicus c-myc binding protein (predicted) (Mycbp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576872-S	ILMN_274437	OLR812	NM_001000847.1	NM_001000847.1		405137	47576872	NM_001000847.1	Olr812	NP_001000847.1	ILMN_1363269	0007000014	S	870	CCTGAGGAACACTGAGGTCAAGGGTGCTGTGAAGAGAGTGTTGTGGAAAC	4	+	70796236-70796285	4q23	Rattus norvegicus olfactory receptor 812 (Olr812), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr812	Olr812
Rattus norvegicus	RefSeq	GI_62661882-S	ILMN_66160	LOC501986	XM_577415.1	XM_577415.1		501986	62661882	XM_577415.1	LOC501986	XP_577415.1	ILMN_1372432	0001050070	S	220	ACAAGAGAACCGAGCACGAAGGGTTCCACGCCGCTCTCCATAAGAGCAGA					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region CTL-F3 precursor (LOC501986), mRNA.					
Rattus norvegicus	RefSeq	GI_62647566-S	ILMN_49770	LOC502820	XM_578320.1	XM_578320.1		502820	62647566	XM_578320.1	LOC502820	XP_578320.1	ILMN_1354678	0003940008	S	6	GTGCCCACTCAGCTCCTGGGGTTGTTGCTGCTGTGGATAACAGATGGAAT				4q31	PREDICTED: Rattus norvegicus similar to NGF-binding Ig light chain (LOC502820), mRNA.					
Rattus norvegicus	RefSeq	GI_13929133-S	ILMN_281868	DEDD	NM_031800.1	NM_031800.1		83631	13929133	NM_031800.1	Dedd	NP_113988.1	ILMN_1364350	0006860519	S	1051	CTCTGGAGCCGACATACTGTTCTGGGGTTTGTTCTCTACCCTTTCCAACC	13	+	87241625-87241674	13q24	Rattus norvegicus death effector domain-containing (Dedd), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence NAS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Deft	Deft
Rattus norvegicus	RefSeq	GI_61557265-S	ILMN_272264	DDX50	XM_001058536.1	XM_001058536.1		361848	109510118	XM_001058536.1	Ddx50	XP_001058536.1	ILMN_1355152	0003060086	S	2151	AGGTCAGGCCGTTCAGGCCGATCTGGTGGTCGATCTGGTGGCCGATCAGG				20q11	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 50, transcript variant 2 (Ddx50), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648721-S	ILMN_60524	LOC500420	XM_575783.2	XM_575783.2		500420	109474763	XM_575783.2	LOC500420	XP_575783.2	ILMN_1354159	0002100609	S	1641	GGGGTCTGGAGAAGTCAACTCTACTCAGGAAACCCATTCACAGCATCTGA	5	-	36493517-36493566	5q21	PREDICTED: Rattus norvegicus similar to CG12279-PA (LOC500420), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62641966-S	ILMN_67307	LOC293641	XM_219505.3	XM_219505.3		293641	62641966	XM_219505.3	LOC293641	XP_219505.3	ILMN_1362535	0004070546	S	1050	GTCAGAGCTGGGGAACACGATGACCAGACAGACGGTCCAGAGCTGCAGAA					PREDICTED: Rattus norvegicus similar to actin (LOC293641), mRNA.					
Rattus norvegicus	RefSeq	GI_62655220-S	ILMN_290726	RGD1563002_PREDICTED	XR_007590.1	XR_007590.1		301521	109487328	XR_007590.1	RGD1563002_predicted		ILMN_1369373	0006770500	S	1024	CACCCCAAGACCCTGGACAGCAAAGCCATAGACTACTTCTCCATCGTGCC					PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434O0527 (predicted) (RGD1563002_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655218-S	ILMN_290726	RGD1563002_PREDICTED	XR_007590.1	XR_007590.1		301521	109487328	XR_007590.1	RGD1563002_predicted		ILMN_1371252	0004210095	S	5388	GAGGCCCCGCATCATTGCCCTACCACCAGTCAGCATGAACAGGGCAGATA					PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434O0527 (predicted) (RGD1563002_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662095-S	ILMN_63323	LOC289937	XM_237935.2	XM_237935.2		289937	62662095	XM_237935.2	LOC289937	XP_237935.1	ILMN_1364895	0003780300	S	524	GGAGAGTGGTGTGAGCGACTCTGTGATAAAGGAGTTCCCCGGCGGTCTTG					PREDICTED: Rattus norvegicus hypothetical LOC289937 (LOC289937), mRNA.					
Rattus norvegicus	RefSeq	GI_62651661-S	ILMN_53062	GDF11	XM_343148.3	XM_343148.3		29454	109480147	XM_343148.3	Gdf11	XP_343149.3	ILMN_1354431	0003520026	S	979	TGGATCATCGCACCTAAGCGCTACAAGGCCAACTACTGCTCCGGCCAGTG	7	-	2185418-2185467	7q11	PREDICTED: Rattus norvegicus growth differentiation factor 11 (Gdf11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process that regulates the coordinated growth and differentiation that establishes the non-random anterior-posterior spatial arrangement of the spinal cord [goid 21512] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644766-S	ILMN_274246	BTBD14A	XM_001074412.1	XM_001074412.1		296583	109469442	XM_001074412.1	Btbd14a	XP_001074412.1	ILMN_1371232	0002640070	S	3082	CAGGAAGACCAATGATGTCCCTGCAGGAGCTGTGGCTGGTCACCTGGGGG				3p13	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 14A (Btbd14a), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652635-S	ILMN_56124	SIAHBP1	XM_343268.3	XM_343268.3		84401	109480898	XM_343268.3	Siahbp1	XP_343269.1	ILMN_1352586	0001660372	S	1673	CCCTCAATGGGCGCTGGTTTGGTGGTCGCAAGGTGGTGGCTGAAGTGTAT	7	-	114101372-114101421	7q34	PREDICTED: Rattus norvegicus siah binding protein 1; FBP interacting repressor; pyrimidine tract binding splicing factor; Ro ribonucleoprotein-binding protein 1 (Siahbp1), mRNA.	A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13399333-S	ILMN_268210	SOST	NM_030584.1	NM_030584.1		80722	13399333	NM_030584.1	Sost	NP_085073.1	ILMN_1356566	0006040026	S	539	CCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGACCTGAGA	10	-	91023792-91023841	10q32.1	Rattus norvegicus sclerosteosis (Sost), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62658854-S	ILMN_51749	LOC498180	XM_573396.1	XM_573396.1		498180	62658854	XM_573396.1	LOC498180	XP_573396.1	ILMN_1363767	0003440048	S	58	TTAAAGAGCTAAGTTTTCGGAGGAGCCAAACAGTCCACGCCCCACTGCGC					PREDICTED: Rattus norvegicus similar to density regulated protein drp1 (LOC498180), mRNA.					
Rattus norvegicus	RefSeq	GI_62654118-S	ILMN_64193	LOC503222	XM_580264.1	XM_580264.1		503222	62654118	XM_580264.1	LOC503222	XP_580264.1	ILMN_1373570	0005910390	S	132	GAGGAAGGTGTCGCTGTGCATTATTGTACCCAGGTTGCTCACAGGTCCTC					PREDICTED: Rattus norvegicus LOC503222 (LOC503222), mRNA.					
Rattus norvegicus	RefSeq	GI_47577080-S	ILMN_295935	OLR309	NM_001000242.1	NM_001000242.1		293607	47577080	NM_001000242.1	Olr309	NP_001000242.1	ILMN_1350928	0000450402	S	650	CCTATGGCTGCATCATTGCTAGCATCCTGCGCATGCGTTCTGCTGAAGGC	1	+	200708384-200708433	1q41	Rattus norvegicus olfactory receptor 309 (Olr309), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr309; ratchr1-200857727-200858659_ORF	Olr309; ratchr1-200857727-200858659_ORF
Rattus norvegicus	RefSeq	GI_62651700-S	ILMN_55002	TJP3_PREDICTED	XM_234924.4	XM_234924.4		314640	109480162	XM_234924.4	Tjp3_predicted	XP_234924.4	ILMN_1350864	0005550064	S	2505	GGGCTAACAGCGACTACGAAGACACCGATGGGGAGGGCACCTATACGGAT	7	+	9929292-9929341	7q11	PREDICTED: Rattus norvegicus tight junction protein 3 (predicted) (Tjp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652786-S	ILMN_63832	PDGFB	XM_343293.2	XM_343293.2		24628	62652786	XM_343293.2	Pdgfb	XP_343294.2	ILMN_1357500	0000510113	S	2543	CAGTTGCCATGACGACGGCTCACAACAGGAAACGAGGCCTGCACTGGGCA				7q34	PREDICTED: Rattus norvegicus platelet derived growth factor, B polypeptide (Pdgfb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The volume enclosed by the membrane of the platelet dense granule [goid 31089] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IEA]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEP]; The orderly movement of cells from one site to another along a substrate such as the extracellular matrix; the migrating cell forms a protrusion that attaches to the substrate [goid 6929] [evidence IEA]; The orderly movement of cells from one site to another along a substrate such as the extracellular matrix; the migrating cell forms a protrusion that attaches to the substrate [goid 6929] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol [goid 10512] [evidence IEA]; Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol [goid 10512] [evidence ISS]; Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue [goid 10544] [evidence IEA]; Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue [goid 10544] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence IMP]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence IEA]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43536] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43536] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IEA]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient [goid 50921] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient [goid 50921] [evidence ISS]	Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence IEA]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with platelet-derived growth factor [goid 48407] [evidence IEA]; Interacting selectively with platelet-derived growth factor [goid 48407] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659112-S	ILMN_67348	LOC501846	XM_577259.1	XM_577259.1		501846	62659112	XM_577259.1	LOC501846	XP_577259.1	ILMN_1369727	0006760593	S	37	CCATGACAACTCAGTGCACTCATGCATTTAAGGCTCACGGTGGCTCTCGG					PREDICTED: Rattus norvegicus similar to Williams-Beuren syndrome critical region 18 (LOC501846), mRNA.					
Rattus norvegicus	RefSeq	GI_62662551-S	ILMN_283680	KLHL2_PREDICTED	XM_001073589.1	XM_001073589.1		290692	109504066	XM_001073589.1	Klhl2_predicted	XP_001073589.1	ILMN_1361121	0003850110	S	514	CACGCCATGTTTACAGGGGAGATGAGCGAGAGCCGAGCAAAGAGAGTTCG				16p13	PREDICTED: Rattus norvegicus kelch-like 2, Mayven (Drosophila) (predicted) (Klhl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662513-S	ILMN_283680	KLHL2_PREDICTED	XM_001073589.1	XM_001073589.1		290692	109504066	XM_001073589.1	Klhl2_predicted	XP_001073589.1	ILMN_1354433	0002650537	S	3144	GTCCTTGGTTTTACCAGTGTGACTTTTTGCCCGTTCCTTTGCAGACCGAC				16p13	PREDICTED: Rattus norvegicus kelch-like 2, Mayven (Drosophila) (predicted) (Klhl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649650-S	ILMN_269090	TCFAP2E_PREDICTED	XR_007665.1	XR_007665.1		313596	109477250	XR_007665.1	Tcfap2e_predicted		ILMN_1367646	0002480082	S	1413	CAGGCAGCGGGCACGGAGAAACCAAGGCTTCAGAGAAGGATGCCAAGCAT				5q36	PREDICTED: Rattus norvegicus transcription factor AP-2, epsilon (predicted) (Tcfap2e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650952-S	ILMN_281371	RGD1561115_PREDICTED	XM_001053824.1	XM_001053824.1		500686	109479591	XM_001053824.1	RGD1561115_predicted	XP_001053824.1	ILMN_1362944	0002640131	S	2358	CTCCTTCCATGTGCGGGAAAAGGTGCGGGAAGAGACCAACACGCGCTCTT				6q24	PREDICTED: Rattus norvegicus similar to Gene model 1568 (predicted) (RGD1561115_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090627-S	ILMN_292212	BCS1L	NM_001007666.1	NM_001007666.1		301514	56090627	NM_001007666.1	Bcs1l	NP_001007667.1	ILMN_1354595	0007100041	S	1384	GCTGACCCAGATGTTCCAGAGGTTCTATCCAGGACAAGCGCCTTCTTTGG	9	+	73942789-73942838	9q33	Rattus norvegicus BCS1-like (yeast) (Bcs1l), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC94495	MGC94495
Rattus norvegicus	RefSeq	GI_62665763-A	ILMN_281044	GLP1R	NM_012728.1	NM_012728.1		25051	7110604	NM_012728.1	Glp1r	NP_036860.1	ILMN_1376377	0000450731	S	2746	GCTTGCCCTCCTCCAACCACTATGAGAAGGCTAGCAGAAGACACCACTGC	20	+	9263926-9263975	20p12	Rattus norvegicus glucagon-like peptide 1 receptor (Glp1r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A clathrin-coated, membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 45334] [evidence IMP]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence TAS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IMP]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IEA]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IMP]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IDA]; The regulated release of hormones, substances with a specific regulatory effect on a particular organ or group of cells [goid 46879] [evidence IDA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51929] [evidence IMP]	Combining with an extracellular or intracellular peptide to initiate a change in cell activity [goid 1653] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with glucagon to initiate a change in cell activity [goid 4967] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IPI]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]	Glip; RATGL1RCP	Glip; RATGL1RCP
Rattus norvegicus	RefSeq	GI_62659136-S	ILMN_48397	LOC363942	XM_344122.2	XM_344122.2		363942	62659136	XM_344122.2	LOC363942	XP_344123.2	ILMN_1367449	0007050168	S	3970	AAGCTCCTGAGAATCTTCCCAACCGAAGCATTTCAATTCACTTGAGTGAG				13p13	PREDICTED: Rattus norvegicus similar to nemo like kinase (LOC363942), mRNA.					
Rattus norvegicus	RefSeq	GI_62638923-S	ILMN_277939	RPS5	XM_001062647.1	XM_001062647.1		25538	109460984	XM_001062647.1	Rps5	XP_001062647.1	ILMN_1373866	0006860364	S	528	AACACGCATTGGGCGGGCTGGAACAGTGAGACGGCAGGCTGTGGATGTAT				1q21	PREDICTED: Rattus norvegicus ribosomal protein S5 (Rps5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34874233-S	ILMN_271463	RGD1565886_PREDICTED	XM_001061729.1	XM_001061729.1		290286	109502505	XM_001061729.1	RGD1565886_predicted	XP_001061729.1	ILMN_1369156	0003780433	S	420	CTAGACACACGTGGTACAACCCACTCACTGGCTCCATTGCACCTGCCTGG				15p12	PREDICTED: Rattus norvegicus RGD1565886 (predicted) (RGD1565886_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652052-S	ILMN_271191	LOC500825	NM_001025052.1	NM_001025052.1		500825	68163528	NM_001025052.1	LOC500825	NP_001020223.1	ILMN_1353988	0001400110	S	1383	GTATCGGAAGAGGCGGGGCTGGAGGAGGGAGAACAGAGAGAGGAAGACAA	7	+	35211214-35211263	7q13	Rattus norvegicus hypothetical protein LOC500825 (LOC500825), mRNA.					
Rattus norvegicus	RefSeq	GI_62643266-S	ILMN_62393	LOC310244	XM_226971.3	XM_226971.3		310244	62643266	XM_226971.3	LOC310244	XP_226971.3	ILMN_1350693	0006770672	S	978	GCACTAGCAGCCCCCCAGGCAGGTAAGATGGACAAGTTAGGCCCTCCACT				2q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110050N22 (predicted) (LOC310244), mRNA.					
Rattus norvegicus	RefSeq	GI_62718548-S	ILMN_67491	LOC367576	XM_346216.2	XM_346216.2		367576	62718548	XM_346216.2	LOC367576	XP_346217.2	ILMN_1362051	0002900112	S	631	CGCTCTGCACTAGGAGGCTAACGGAGGGAGCACTGAAATCGTGGGCTACT					PREDICTED: Rattus norvegicus hypothetical LOC367576 (LOC367576), mRNA.					
Rattus norvegicus	RefSeq	Rn.44	ILMN_263730	ENPP3	NM_019370.1	NM_019370.1		54410	9506848	NM_019370.1	Enpp3	NP_062243.1	ILMN_1530484	0007100180	S	2264	TATAGAAAGAAATGGAGTGAATGTGGTTAGTGGACCCATATTTGATTACA	1	+	21156213-21156262	1p12	Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 3 (Enpp3), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence ISS]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence IEA]; The directed movement of inorganic diphosphate into, out of, within or between cells [goid 30505] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle cell differentiation [goid 51150] [evidence NAS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the sequential hydrolytic removal of 5'-nucleotides from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides [goid 4528] [evidence TAS]; Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides [goid 4551] [evidence TAS]; Catalysis of the reaction: H2O + a nucleoside triphosphate = pyrophosphate + a nucleotide [goid 47429] [evidence ISS]; Catalysis of the reaction: H2O + a nucleoside triphosphate = pyrophosphate + a nucleotide [goid 47429] [evidence IEA]	RB13-6	RB13-6
Rattus norvegicus	RefSeq	GI_62638345-A	ILMN_263730	ENPP3	NM_019370.1	NM_019370.1		54410	9506848	NM_019370.1	Enpp3	NP_062243.1	ILMN_1376301	0006840121	S	2335	CCCCCGATGAAATCACAAACTATGTAGCTGGCACCGATGTTCCTGTCCCG	1	+	21156284-21156302:21157940-21157970	1p12	Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 3 (Enpp3), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence ISS]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with triphosphate on its glycose moiety [goid 9143] [evidence IEA]; The directed movement of inorganic diphosphate into, out of, within or between cells [goid 30505] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle cell differentiation [goid 51150] [evidence NAS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the sequential hydrolytic removal of 5'-nucleotides from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides [goid 4528] [evidence TAS]; Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides [goid 4551] [evidence TAS]; Catalysis of the reaction: H2O + a nucleoside triphosphate = pyrophosphate + a nucleotide [goid 47429] [evidence ISS]; Catalysis of the reaction: H2O + a nucleoside triphosphate = pyrophosphate + a nucleotide [goid 47429] [evidence IEA]	RB13-6	RB13-6
Rattus norvegicus	RefSeq	GI_6981639-S	ILMN_300281	HNF1B	NM_013103.1	NM_013103.1		25640	6981639	NM_013103.1	Hnf1b	NP_037235.1	ILMN_1375121	0003170577	S	1969	GAGGTGGCCGGTGCAAAATGGTGCAACAGGAATCGAGAAGCCCATGGAGT				10q26	Rattus norvegicus HNF1 homeobox B (Hnf1b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 1677179] [evidence ISS]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an inner cell mass cell [goid 1826] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [pmid 1677179] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [pmid 1677179] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [pmid 1677179] [evidence ISS]; The process whose specific outcome is the progression of the genitalia over time, from its formation to the mature structure [goid 48806] [pmid 1677179] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [pmid 1677179] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 1677179] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [pmid 1677179] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Hnf1b; VHNF1; LF-B3; MGC93549	Hnf1b; VHNF1; LF-B3; MGC93549
Rattus norvegicus	RefSeq	GI_47577570-S	ILMN_287478	OLR519	NM_001000318.1	NM_001000318.1		295772	47577570	NM_001000318.1	Olr519	NP_001000318.1	ILMN_1360035	0004610551	S	638	ACTTGGTGGGCTTGATTGAGGCAGTCACCATCCTAATTGTTCTGGTTTCC	3	+	69998756-69998805	3q24	Rattus norvegicus olfactory receptor 519 (Olr519), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr519	Olr519
Rattus norvegicus	RefSeq	GI_18426863-S	ILMN_264578	HSPB2	NM_130431.1	NM_130431.1		161476	18426863	NM_130431.1	Hspb2	NP_569115.1	ILMN_1372681	0006450735	S	496	CCTGCACCTCCTGACCCCGAGGAAGAGGAAGAGGTAGCCAGAGTTGAACC	8	-	54105810-54105859	8q23	Rattus norvegicus heat shock protein 2 (Hspb2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The process whose specific outcome is the progression of the somatic muscle over time, from its formation to the mature structure. This muscle is found in Nematodes [goid 7525] [evidence ISS]; The process whose specific outcome is the progression of the somatic muscle over time, from its formation to the mature structure. This muscle is found in Nematodes [goid 7525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51172605-A	ILMN_281009	TRAPPC4	NM_001003708.1	NM_001003708.1		367073	51172605	NM_001003708.1	Trappc4	NP_001003708.1	ILMN_1376876	0002030520	S	610	CTAGCTCTCGAGGTGGCGGAGAAGGCTGGCACTTTTGGACCTGGGTCATA	8	-	47370979-47371028	8q22	Rattus norvegicus trafficking protein particle complex 4 (Trappc4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; A large complex present on the cis-Golgi that acts prior to SNARE complex assembly to mediate vesicle docking and fusion [goid 30008] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Sbdn	Sbdn
Rattus norvegicus	RefSeq	GI_62665305-S	ILMN_264973	CNTNAP4_PREDICTED	XM_001076244.1	XM_001076244.1		307865	109508812	XM_001076244.1	Cntnap4_predicted	XP_001076244.1	ILMN_1363085	0001660025	S	4071	TAGCCAGGGGCTCTCAGTGGATGGGAACTGCTCTAACCCTGACGGTACAG				19q12	PREDICTED: Rattus norvegicus contactin associated protein 4 (predicted), transcript variant 2 (Cntnap4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606370-S	ILMN_286995	OLR377	NM_001001276.1	NM_001001276.1		293810	47606370	NM_001001276.1	Olr377	NP_001001276.1	ILMN_1361117	0004670288	S	540	CCTCCCGCCACTGTTAAAACTCGTATGTGGGAACAGTTACGTCCAGGAGG	1	-	216898053-216898102	1q43	Rattus norvegicus olfactory receptor 377 (Olr377), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr377	Olr377
Rattus norvegicus	RefSeq	GI_62666883-S	ILMN_288030	RGD1562200_PREDICTED	XM_001058636.1	XM_001058636.1		363471	109511831	XM_001058636.1	RGD1562200_predicted	XP_001058636.1	ILMN_1349596	0006220373	S	909	CTGTTCCCACCAAGCAGGGGGATGATGGAGGCGATCTATGGCATGGGGAT				Xq22	PREDICTED: Rattus norvegicus similar to GS2 gene (predicted) (RGD1562200_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758767-S	ILMN_298812	ALDH1A2	NM_053896.1	NM_053896.1		116676	16758767	NM_053896.1	Aldh1a2	NP_446348.1	ILMN_1359926	0005270671	S	2009	TGTTACTGACAAATGAGGACAACGCGCTCAGCAGACAGCCCCTGACATGG	8	+	75770928-75770977	8q24	Rattus norvegicus aldehyde dehydrogenase 1 family, member A2 (Aldh1a2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 9855] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 9855] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IEA]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence IEA]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence IEA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence TAS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence IDA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal [goid 1758] [evidence IDA]; Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal [goid 1758] [evidence ISS]; Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal [goid 1758] [evidence IEA]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence ISS]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina [goid 16918] [evidence IDA]	MGC114283; Raldh-2	MGC114283; Raldh-2
Rattus norvegicus	RefSeq	GI_62648303-S	ILMN_282954	AEBP2_PREDICTED	XM_001071806.1	XM_001071806.1		297705	109474430	XM_001071806.1	Aebp2_predicted	XP_001071806.1	ILMN_1367081	0004590184	S	4339	GACCATAGAAAGCTGGGTGCGCTGACTAAAGCCGTGCGTTTGGGAGGACG				4q44	PREDICTED: Rattus norvegicus AE binding protein 2 (predicted) (Aebp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663626-S	ILMN_285769	ELMO1_PREDICTED	XM_001059750.1	XM_001059750.1		361251	109505922	XM_001059750.1	Elmo1_predicted	XP_001059750.1	ILMN_1353691	0001340600	S	3165	ACTGTGACCATGACCACCCTCTCTATCACACTGTCTAGTCGTGGGCCTCC				17q11	PREDICTED: Rattus norvegicus engulfment and cell motility 1, ced-12 homolog (C. elegans) (predicted) (Elmo1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662523-A	ILMN_265966	GTPBP3	NM_001011919.1	NM_001011919.1		290633	58865407	NM_001011919.1	Gtpbp3	NP_001011919.1	ILMN_1376376	0004590411	S	1273	TGCAGGCCCTGAAGACTGAACTGGCTGCAGTGTGTGGGGACCCATCCACA	16	+	18663183-18663213:18663378-18663396	16p14	Rattus norvegicus GTP binding protein 3 (mitochondrial) (Gtpbp3), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically [goid 6400] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646130-S	ILMN_287910	PROCR	NM_001025733.2	NM_001025733.2		362248	71143147	NM_001025733.2	Procr	NP_001020904.1	ILMN_1371126	0002650113	S	769	GGTCCTGGGTATCCTGATGGGCTGTTTCATAATCGCTGGTGTGGCCGTGG	3	+	146272674-146272723	3q42	Rattus norvegicus protein C receptor, endothelial (Procr), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC116255; MGC114418	MGC116255; MGC114418
Rattus norvegicus	RefSeq	GI_62663695-S	ILMN_63497	RGD1565969_PREDICTED	XM_341545.3	XM_341545.3		361261	109505092	XM_341545.3	RGD1565969_predicted	XP_341546.2	ILMN_1368316	0004210204	S	1485	GTAAGACTCCTGCATTCCTTCTTGCTGCTCTCTTGGGATTGGGGGTGGGG	17	-	66039425-66039474	17q12.1	PREDICTED: Rattus norvegicus similar to 5730405I09Rik protein (predicted) (RGD1565969_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718117-S	ILMN_66408	LOC503329	XM_578864.1	XM_578864.1		503329	62718117	XM_578864.1	LOC503329	XP_578864.1	ILMN_1359831	0002760576	S	666	GATCTGGTGGAAAAGATCCGCTCGCTGCCTAAAAACACCTTGAAGGGCAG					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC503329), mRNA.					
Rattus norvegicus	RefSeq	Rn.98790	ILMN_277473	CNDP2	NM_001010920.1	NM_001010920.1		291394	58219061	NM_001010920.1	Cndp2	NP_001010920.1	ILMN_1530308	0001570601	S	618	ACGAGTTAATTTTTGCCCAGAAAGACAAGTTCTTCAAAGATGTGGACTAT	18	-	81222968-81223017	18q12.3	Rattus norvegicus CNDP dipeptidase 2 (metallopeptidase M20 family) (Cndp2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664699-A	ILMN_277473	CNDP2	NM_001010920.1	NM_001010920.1		291394	58219061	NM_001010920.1	Cndp2	NP_001010920.1	ILMN_1376891	0006900647	S	1817	TCCAAAAGCTCCAGGTCTGTGGGAGGCGTTGACCATCGTGGACTGAGGCT	18	-	81216074-81216123	18q12.3	Rattus norvegicus CNDP dipeptidase 2 (metallopeptidase M20 family) (Cndp2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649468-S	ILMN_294542	RGD1563012_PREDICTED	XR_008751.1	XR_008751.1		500530	109477064	XR_008751.1	RGD1563012_predicted		ILMN_1373248	0001940044	S	244	CCTAAAGGGGAAACCAAAAAGAAGTTCAAGGACCCAGTGCCCCCAAGAGG				5q36	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1563012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506830-S	ILMN_288793	KCNN1	NM_019313.1	NM_019313.1		54261	9506830	NM_019313.1	Kcnn1	NP_062186.1	ILMN_2039825	0003120678	S	1273	CAGGCCATCCATCAGGCGCAGAAGCTCCGGACTGTGAAGATTGAACAAGG	16	+	19102114-19102163	16p14	Rattus norvegicus potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 (Kcnn1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the transmembrane transfer of potassium by a channel with a unit conductance of 2 to 20 picoSiemens that opens in response to stimulus by internal calcium ions. Small conductance calcium-activated potassium channels are more sensitive to calcium than are large conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 16286] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19424211-S	ILMN_269586	PTPN21	NM_133545.1	NM_133545.1		171070	19424211	NM_133545.1	Ptpn21	NP_598229.1	ILMN_1356575	0006040091	S	5321	CCCATCGAAGCAGGACAGACACAGGTGGATTGTGCCCCAGGGTGGGATTT	6	-	122840173-122840222	6q32	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 21 (Ptpn21), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence NAS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ptp2E	Ptp2E
Rattus norvegicus	RefSeq	GI_62642413-I	ILMN_63190	LOC309453	XM_347194.2	XM_347194.2		309453	62642413	XM_347194.2	LOC309453	XP_347195.1	ILMN_1375917	0000360075	S	2	TCGCTTAAACGCGACCAGAGGACAGAGGAGGCACTCGGTAACCTAGGAGT				1q54	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0710008C12 (predicted) (LOC309453), mRNA.					
Rattus norvegicus	RefSeq	GI_62648974-S	ILMN_282319	TEX10_PREDICTED	XM_001054251.1	XM_001054251.1		298065	109476469	XM_001054251.1	Tex10_predicted	XP_001054251.1	ILMN_1354548	0000780671	S	2773	TGCCTGTTGTAGGCCAGCTGCTTCGCCTGCTGCTTCAGCATGTGCCTCTT				5q22	PREDICTED: Rattus norvegicus testis expressed gene 10 (predicted), transcript variant 3 (Tex10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576302-S	ILMN_294392	OLR1275	NM_001000800.1	NM_001000800.1		405085	47576302	NM_001000800.1	Olr1275	NP_001000800.1	ILMN_1358816	0005900136	S	692	CTGAGGGCAGAGCCAAAGCTTTCAGCACCTGCAGCTCCCACATCTCAGTT	8	-	41219400-41219449	8q22	Rattus norvegicus olfactory receptor 1275 (Olr1275), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1275	Olr1275
Rattus norvegicus	RefSeq	GI_62659146-S	ILMN_48811	RGD1563614_PREDICTED	XM_573424.2	XM_573424.2		498206	109497746	XM_573424.2	RGD1563614_predicted	XP_573424.2	ILMN_1352887	0004050309	S	1547	CGCCCAGTGAACAGCCACCTGCCTCTGGAAACGTGACAGGAAACAGTAAC	13	+	12002648-12002674:12014019-12014041	13p13	PREDICTED: Rattus norvegicus similar to Tumor necrosis factor receptor superfamily, member 11a (predicted) (RGD1563614_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650306-S	ILMN_53059	TTC7	XM_343013.3	XM_343013.3		362696	109477908	XM_343013.3	Ttc7	XP_343014.3	ILMN_1349781	0002810112	S	2959	CGGCTGGCTGAGGTGAAGGGCAGCTTTGAAGAGGCCAAGCAGCTGTACAA	6	+	10880988-10881037	6q12	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 7 (Ttc7), mRNA.		The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40786468-S	ILMN_281456	DLD	NM_199385.1	NM_199385.1		298942	40786468	NM_199385.1	Dld	NP_955417.1	ILMN_1370589	0003940025	S	1476	GGTGAATGAAGCCGCCCTGGCATTGGAATATGGAGCGTCCTGTGAAGACG	6	-	49185848-49185897	6q16	Rattus norvegicus dihydrolipoamide dehydrogenase (Dld), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]; A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction [goid 43159] [evidence ISS]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence IDA]	The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate [goid 6086] [evidence IDA]; The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I [goid 6120] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm [goid 7369] [evidence ISS]; The chemical reactions and pathways involving lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid [goid 9106] [evidence IDA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence ISS]; The chemical reactions and pathways involving dihydrolipoamide, the reduced form of lipoamide, produced as an intermediate in the reactions in which lipoamide acts as a cofactor [goid 51068] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+ [goid 4148] [evidence IDA]; Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+ [goid 4148] [evidence ISS]; Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+ [goid 4148] [evidence IDA]; Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+ [goid 4148] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with lipoamide, the functional form of lipoic acid in which the carboxyl group is attached to protein by an amide linkage to a lysine amino group [goid 43544] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62663845-S	ILMN_49469	LOC364741	XM_344608.2	XM_344608.2		364741	62663845	XM_344608.2	LOC364741	XP_344609.2	ILMN_1371921	0004780528	S	197	TCGCACTTTCACGGTGGTGGGCAAGGTGACAGAGTGGTGCTTCACAGCCA					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S6 (LOC364741), mRNA.					
Rattus norvegicus	RefSeq	GI_62666477-S	ILMN_266233	KLHL13	XM_001061200.1	XM_001061200.1		313445	109512474	XM_001061200.1	Klhl13	XP_001061200.1	ILMN_1375046	0000430035	S	3390	GCTTCGCCTGGGAAGCTGCTTTTGCTCTATGATGTCCATGGTTTCCCTTT				Xq12	PREDICTED: Rattus norvegicus kelch-like 13 (Drosophila) (Klhl13), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981065-S	ILMN_273121	IBSP	NM_012587.1	NM_012587.1		24477	6981065	NM_012587.1	Ibsp	NP_036719.1	ILMN_1371246	0004280193	S	1575	GGAGAGTGTTGGAATGAGTGTGGGTCTCAAGGAGCAGGGAACAATTTGGC	14	-	6548854-6548903	14p22	Rattus norvegicus integrin binding sialoprotein (Ibsp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence TAS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC156673; Bsp	MGC156673; Bsp
Rattus norvegicus	RefSeq	GI_62653897-S	ILMN_52805	LOC501020	XM_580153.1	XM_580153.1		501020	62653897	XM_580153.1	LOC501020	XP_580153.1	ILMN_1355885	0000060373	S	456	GACGCCCGCGAGCAGGTTGTTGTTTTTATGAGGCGTCACTGGCGTCTGGA					PREDICTED: Rattus norvegicus LOC501020 (LOC501020), mRNA.					
Rattus norvegicus	RefSeq	GI_62666907-S	ILMN_302178	MGC114483	NM_001024880.1	NM_001024880.1		302434	67846037	NM_001024880.1	MGC114483	NP_001020051.1	ILMN_1365754	0005270711	S	1087	CCAGGATGAGAGTGCAGCCAGGAGAGATGAGGCTGTTGGTTTCCATGCTG	X	-	79221589-79221638	Xq22	Rattus norvegicus similar to MAGEB3 (MGC114483), mRNA.					
Rattus norvegicus	RefSeq	GI_62661742-S	ILMN_58781	LOC361075	XM_346935.2	XM_346935.2		361075	62661742	XM_346935.2	LOC361075	XP_346936.1	ILMN_1370327	0005910270	S	472	ATGTGCCCCTGCTGATCCATTCACTCGCCGAAGGACATCGTGACTATCTG					PREDICTED: Rattus norvegicus hypothetical LOC361075 (LOC361075), mRNA.					
Rattus norvegicus	RefSeq	GI_62656996-S	ILMN_59728	LOC360244	XM_346405.2	XM_346405.2		360244	62656996	XM_346405.2	LOC360244	XP_346406.1	ILMN_1367900	0005080494	S	1862	TCAGTCCCAGTCCTCAAAATCTGCCGACTGCGATGACGATGATTCGAAAG					PREDICTED: Rattus norvegicus hypothetical LOC360244 (LOC360244), mRNA.					
Rattus norvegicus	RefSeq	GI_11120733-S	ILMN_295499	ECEL1	NM_021776.1	NM_021776.1		60417	11120733	NM_021776.1	Ecel1	NP_068544.1	ILMN_1363396	0001660020	S	7625	CCGTGCACTGGTGGTATAATGGTGGGCAAAGCTGGCTTTCATTGTGCCTC	9	-	85933919-85933968	9q35	Rattus norvegicus endothelin converting enzyme-like 1 (Ecel1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Dine	Dine
Rattus norvegicus	RefSeq	GI_62651732-S	ILMN_265845	RGD1566094_PREDICTED	XM_001076264.1	XM_001076264.1		500793	109481556	XM_001076264.1	RGD1566094_predicted	XP_001076264.1	ILMN_1369196	0002060538	S	1160	GTTACGCGGCTGGGAACAATAACGGCACGTCTGTGGAGGATGGGCAGATC				7q11	PREDICTED: Rattus norvegicus similar to BTB (PO)Z domain containing 2 (predicted) (RGD1566094_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657066-S	ILMN_63562	GPR2_PREDICTED	XM_343968.3	XM_343968.3		363682	109489039	XM_343968.3	Gpr2_predicted	XP_343969.1	ILMN_1351193	0003840500	S	930	AGCCTCAATCCGGTGCTGTATGCTTTTTTGGGCCTGCGCTTCCGCCAGGA	10	-	90194535-90194584	10q32.1	PREDICTED: Rattus norvegicus G protein-coupled receptor 2 (predicted) (Gpr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659753	ILMN_272019	PEA15A	NM_001013231.1	NM_001013231.1		364052	61557369	NM_001013231.1	Pea15a	NP_001013249.1	ILMN_1650146	0002940348	S	1603	ATTGTCTAGGCCAGAGCGGGAGTGGGAGGGGAATGCCACAGTAAAGGGAG	13	-	88188327-88188376	13q24	Rattus norvegicus phosphoprotein enriched in astrocytes 15A (Pea15a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46325] [evidence ISS]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8850228-A	ILMN_299040	MAP6	NM_017204.1	NM_017204.1		29457	8850228	NM_017204.1	Map6	NP_058900.1	ILMN_1376630	0006510647	S	3347	GGATCCCCTTGATTCCCTTGAAATGCCATGGAGGAGCTGGCAGTGGAAGT				1q32	Rattus norvegicus microtubule-associated protein 6 (Map6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]		Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667573	ILMN_69730	LOC503482	XM_580271.1	XM_580271.1		503482	62667573	XM_580271.1	LOC503482	XP_580271.1	ILMN_1651123	0000510538	S	368	GACAACTTGTCAGCCAAGGAATACAGCTACTAGTAAGCCATGGGATACAG					PREDICTED: Rattus norvegicus LOC503482 (LOC503482), mRNA.					
Rattus norvegicus	RefSeq	GI_47577092-S	ILMN_268471	OLR312	NM_001000764.1	NM_001000764.1		405038	47577092	NM_001000764.1	Olr312	NP_001000764.1	ILMN_1368339	0000130156	S	653	CTTATAGCTGCATCATTGCCAGCATCCTGCGCATGCGTTCTCCTGAAGGC	1	+	200805795-200805844	1q41	Rattus norvegicus olfactory receptor 312 (Olr312), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr312	Olr312
Rattus norvegicus	RefSeq	GI_62640985	ILMN_282020	OLR156	NM_001006595.1	NM_001006595.1		293303	54635065	NM_001006595.1	Olr156	NP_001006595.1	ILMN_1649815	0003870619	S	555	TCGGATTTATGGGCTCTTTGTGGTCTTGCTCGTGGTGGGACTCGATCTGC	1	-	162247882-162247931	1q32	Rattus norvegicus olfactory receptor 156 (Olr156), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr156	Olr156
Rattus norvegicus	RefSeq	GI_62639603-S	ILMN_267185	RGD1561832_PREDICTED	XM_001080370.1	XM_001080370.1		499143	109461819	XM_001080370.1	RGD1561832_predicted	XP_001080370.1	ILMN_1364201	0001980609	S	1790	AGGCCTTCCTCCAGAAGTCTGTGTTGAAATGCCATCAGCGGACCCACACT					PREDICTED: Rattus norvegicus similar to CDNA sequence BC043301 (predicted) (RGD1561832_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575908-S	ILMN_299395	OLR1463	NM_001000023.1	NM_001000023.1		287363	47575908	NM_001000023.1	Olr1463	NP_001000023.1	ILMN_1349493	0006040132	S	641	CCCCTTTGACAGTGCTCATCTCCTACATCTTCATTGCCAGGGCTGTGCTG	10	-	45896608-45896657	10q22	Rattus norvegicus olfactory receptor 1463 (Olr1463), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-45910921-45909962_ORF; Olr1463	ratchr10-45910921-45909962_ORF; Olr1463
Rattus norvegicus	RefSeq	GI_62650557-S	ILMN_65689	LOC503020	XM_578537.1	XM_578537.1		503020	62650557	XM_578537.1	LOC503020	XP_578537.1	ILMN_1355446	0005340075	S	979	GAGACAATGTTGCTGCCAGAGAGGAATGGAGGAAGGGGATCGAGGTTCTG					PREDICTED: Rattus norvegicus similar to ribosomal protein S13 (LOC503020), mRNA.					
Rattus norvegicus	RefSeq	GI_16758127-S	ILMN_291056	NGFRAP1	NM_053401.1	NM_053401.1		117089	16758127	NM_053401.1	Ngfrap1	NP_445853.1	ILMN_2040432	0000360762	S	170	CATCACCGGAGAGGACAGGCCCGCCGACTTGCCCCTAACTTTCGATGGGC	X	+	123586828-123586877	Xq35	Rattus norvegicus nerve growth factor receptor (TNFRSF16) associated protein 1 (Ngfrap1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IPI]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA];  [goid 8625] [evidence ISS];  [goid 8625] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA];  [goid 8625] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA];  [goid 8625] [evidence IEA]	Interacting selectively with a death receptor [goid 5123] [evidence ISS]; Interacting selectively with a death receptor [goid 5123] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a death receptor [goid 5123] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a death receptor [goid 5123] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Bex3; Nade	Bex3; Nade
Rattus norvegicus	RefSeq	GI_62644922-S	ILMN_55833	ABL1_MAPPED	XM_231137.4	XM_231137.4		311860	109468007	XM_231137.4	Abl1_mapped	XP_231137.4	ILMN_1364160	0003140438	S	4609	ATGGTCCACACTGCCAGACACTACCATGCGCTGACACCATGCTCACAAGG	3	+	10906867-10906916	3p12	PREDICTED: Rattus norvegicus v-abl Abelson murine leukemia viral oncogene homolog 1 (mapped) (Abl1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_12018243-S	ILMN_300996	MTA1	NM_022588.1	NM_022588.1		64520	12018243	NM_022588.1	Mta1	NP_072110.1	ILMN_1359325	0005690750	S	2607	CTTACACCTGGAATGTTAGGATTGGTGCAGCCAGCAGCGGCCAAGCTGCC	6	+	138143973-138143983	6q32	Rattus norvegicus metastasis associated 1 (Mta1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652871-S	ILMN_68212	UPK3A_PREDICTED	XM_235546.4	XM_235546.4		315190	109481112	XM_235546.4	Upk3a_predicted	XP_235546.4	ILMN_1368657	0004060632	S	747	CTGATGGAGAAACAACACACGACTCGCAGATCACCCAGGAGGCTGTCCCC	7	+	123037567-123037616	7q34	PREDICTED: Rattus norvegicus uroplakin 3A (predicted) (Upk3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638660-S	ILMN_60590	LOC499053	XM_579915.1	XM_579915.1		499053	62638660	XM_579915.1	LOC499053	XP_579915.1	ILMN_1351338	0004570288	S	543	GATTCTGCAACTTCACTGCCCCATGATCTCTACAGTGACAGGAATACCCC				1q12	PREDICTED: Rattus norvegicus LOC499053 (LOC499053), mRNA.					
Rattus norvegicus	RefSeq	GI_62078850-S	ILMN_265187	RGD1304952	NM_001014059.1	NM_001014059.1		312711	62078850	NM_001014059.1	RGD1304952	NP_001014081.1	ILMN_1373446	0007050132	S	1962	AATATGGATTTGGGGGAGTCACCTGCTGCACTACATGAGATGGGGCTCCC	4	+	161123455-161123504	4q42	Rattus norvegicus similar to RIKEN cDNA C530028O21 gene (RGD1304952), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_6981391-S	ILMN_55049	PRKAG1	NM_013010.1	NM_013010.1		25520	6981391	NM_013010.1	Prkag1	NP_037142.1	ILMN_1367034	0005690022	S	1218	TAGAGAAAACACTTGTCAGCCTAGCCAGCCCCAGTCGCTCGTCACAGCCC				7q36	Rattus norvegicus protein kinase, AMP-activated, gamma 1 non-catalytic subunit (Prkag1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence EXP]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IDA]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IMP]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence TAS]; Any process that modulates the activity of an enzyme [goid 50790] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence TAS]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IMP]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IMP]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]	Prkaac; Prkga1	Prkaac; Prkga1
Rattus norvegicus	RefSeq	GI_62651690-S	ILMN_263153	FZR1_PREDICTED	XM_001075601.1	XM_001075601.1		314642	109481524	XM_001075601.1	Fzr1_predicted	XP_001075601.1	ILMN_1359448	0004670333	S	2245	CTGAGCAGGAGGCCGAGATCCCATCAAACCCCCAAACCCAGTGTCACCTG				7q11	PREDICTED: Rattus norvegicus fizzy/cell division cycle 20 related 1 (Drosophila) (predicted) (Fzr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377499-S	ILMN_274524	NOS2	NM_012611.2	NM_012611.2		24599	31377499	NM_012611.2	Nos2	NP_036743.2	ILMN_1372107	0000540017	S	3869	GCTGAGAGCAGAGGAAAATGAACCACCCGACTGAAGCACTTTGGGTGACC	10	+	65072534-65072583	10q25	Rattus norvegicus nitric oxide synthase 2, inducible (Nos2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence ISS]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence IEP]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6527] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6527] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IDA]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IDA]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of guanylyl cyclase and a subsequent increase in the concentration of cyclic GMP [goid 7199] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IMP]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; A series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response [goid 19934] [evidence IDA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEP]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism [goid 50829] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the killing by an organism of cells in another organism [goid 51712] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]	Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IDA]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence TAS]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IDA]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence TAS]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence TAS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence TAS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a tetrahydrobiopterin, 5,6,7,8-tetrahydrobiopterin or a derivative thereof; tetrahydrobiopterins are enzyme cofactors that carry electrons in redox reactions [goid 34617] [evidence ISS]; Interacting selectively with 2-amino-5-(carbamimidamido)pentanoic acid [goid 34618] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence TAS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence TAS]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	Nos2a; iNos	Nos2a; iNos
Rattus norvegicus	RefSeq	GI_62666514-S	ILMN_296459	RGD1566148_PREDICTED	XR_007653.1	XR_007653.1		501514	109511487	XR_007653.1	RGD1566148_predicted		ILMN_1350567	0002450133	S	455	CTGCCAGGAATGACAAGCAGCTCTATGAGAAGGCTGCCAAGCTGATGGAG				Xq12	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor-like 2 binding protein (predicted) (RGD1566148_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661569-S	ILMN_273032	RCBTB1	XM_001063868.1	XM_001063868.1		361050	109502524	XM_001063868.1	Rcbtb1	XP_001063868.1	ILMN_1370224	0005550082	S	2412	TGAGGACTTAACCTCATGCCCAGGACACACATGGTGGAGAGAGACAGCGG				15p12	PREDICTED: Rattus norvegicus regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (Rcbtb1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62654986-S	ILMN_268967	RGD1562067_PREDICTED	XR_007938.1	XR_007938.1		501134	109487072	XR_007938.1	RGD1562067_predicted		ILMN_1367952	0001770593	S	506	CCACGGTTTCTGGCTAGACCTCAGACAAGCCCTCCAGAGACCCAGAGACT				9q22	PREDICTED: Rattus norvegicus similar to cell division cycle associated 3 (predicted) (RGD1562067_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9910397-S	ILMN_265206	LY6C	NM_020103.1	NM_020103.1		56778	9910397	NM_020103.1	Ly6c	NP_064488.1	ILMN_1360177	0006400100	S	154	GTGTGTGTTTCTCAGGTGTTAGAAGCTGTAGAGGGCTCTGTAAGACGGAC	7	-	113179271-113179287:113181002-113181034	7q34	Rattus norvegicus Ly6-C antigen (Ly6c), mRNA.					
Rattus norvegicus	RefSeq	GI_62651018-S	ILMN_66036	LOC299179	XM_216763.3	XM_216763.3		299179	62651018	XM_216763.3	LOC299179	XP_216763.1	ILMN_1355072	0005720168	S	519	CATCTCCATCTGTAGGAAGAAGAGTCCAGACCTGTGGAAACCTGGATGTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810020G14 (predicted) (LOC299179), mRNA.					
Rattus norvegicus	RefSeq	GI_62649451-S	ILMN_286027	MGC112775	XM_001064399.1	XM_001064399.1		500526	109476964	XM_001064399.1	MGC112775	XP_001064399.1	ILMN_1371050	0000520497	S	1756	TCAGGAAGGGCAGGGAACCAACCAGATCAGTCTTCCAGTCTGTAGCACGG				5q36	PREDICTED: Rattus norvegicus similar to map kinase interacting kinase (MGC112775), mRNA.					
Rattus norvegicus	RefSeq	GI_62647098-S	ILMN_274254	TAS2R137	NM_001025149.1	NM_001025149.1		500089	68342002	NM_001025149.1	Tas2r137	NP_001020320.1	ILMN_1361713	0002690022	S	636	GCAGATGCAGAAATACAGTGTTGGCTCCAGAGATCAGAGTGCGGAGGCCC	4	+	68045573-68045622	4q22	Rattus norvegicus taste receptor, type 2, member 137 (Tas2r137), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659393-S	ILMN_278527	RGD1310950_PREDICTED	XM_001063776.1	XM_001063776.1		289400	109498699	XM_001063776.1	RGD1310950_predicted	XP_001063776.1	ILMN_1350806	0003840315	S	7350	GCCAAAGTCCCCTTCTTTGATGTGACTCATGGACACTGTTGGGCAATGTG				13q13	PREDICTED: Rattus norvegicus similar to KIAA1078 protein (predicted), transcript variant 2 (RGD1310950_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642865-S	ILMN_64874	RGD1565105_PREDICTED	XM_577983.2	XM_577983.2		502503	109464314	XM_577983.2	RGD1565105_predicted	XP_577983.1	ILMN_1358399	0005290204	S	394	CTCCGGCTAGTGGTCAGCATGGCCCGTGGAAATCAAAGAGAAATTGCCCG	2	+	31133779-31133803:31134640-31134664	2q12	PREDICTED: Rattus norvegicus similar to small EDRK-rich factor 1 (predicted) (RGD1565105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657616-S	ILMN_278041	MRAP_PREDICTED	XM_001067907.1	XM_001067907.1		288271	109493883	XM_001067907.1	Mrap_predicted	XP_001067907.1	ILMN_1359437	0001940288	S	575	AGCAGTCACGCTCAAGCCAACTGGTGAACTCAAACCAACCTGGACGGCTG				11q11	PREDICTED: Rattus norvegicus melanocortin 2 receptor accessory protein (predicted) (Mrap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9665237-S	ILMN_286166	ZNF386	NM_019620.1	NM_019620.1		25165	9665237	NM_019620.1	Znf386	NP_062566.1	ILMN_1354535	0004060180	S	1711	GCTTTCATCCACTGCACAAACCTTACTCAACACCGGAGAATCCATACAGG	6	+	143326231-143326280	6q33	Rattus norvegicus zinc finger protein 386 (Kruppel-like) (Znf386), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Kzf1	Kzf1
Rattus norvegicus	RefSeq	GI_42476145-S	ILMN_281301	PCNA	NM_022381.2	NM_022381.2		25737	42476145	NM_022381.2	Pcna	NP_071776.1	ILMN_1364203	0002350091	S	968	GATCGCTTCTGAGATGCCAGCGTGTTCTGAGGTCTTTTCTGTCACCAAGT	3	-	120008941-120008990	3q36	Rattus norvegicus proliferating cell nuclear antigen (Pcna), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a cell nucleus, composed of lamin filaments. The polypeptides of the lamina are thought to be concerned in the dissolution of the nuclear envelope and its re-formation during mitosis. The lamina is composed of lamin A and lamin C filaments cross-linked into an orthogonal lattice, which is attached via lamin B to the inner nuclear membrane through interactions with a lamin B receptor, an IFAP, in the membrane [goid 5652] [evidence ISS]; The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a cell nucleus, composed of lamin filaments. The polypeptides of the lamina are thought to be concerned in the dissolution of the nuclear envelope and its re-formation during mitosis. The lamina is composed of lamin A and lamin C filaments cross-linked into an orthogonal lattice, which is attached via lamin B to the inner nuclear membrane through interactions with a lamin B receptor, an IFAP, in the membrane [goid 5652] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence IEA]; A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation [goid 43626] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA replication [goid 6275] [evidence IEA]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence ISS]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; An accessory subunit of DNA polymerase that acts to increase the processivity of polymerization [goid 30337] [evidence IEA]; Interacting selectively with the mismatch repair complex MutLalpha [goid 32405] [evidence ISS]; Interacting selectively with the mismatch repair complex MutLalpha [goid 32405] [evidence IEA]	PCNAR; Pcna/cyclin	PCNAR; Pcna/cyclin
Rattus norvegicus	RefSeq	GI_62653519-S	ILMN_57041	LOC367063	XM_345923.2	XM_345923.2		367063	62653519	XM_345923.2	LOC367063	XP_345924.2	ILMN_1363642	0002470070	S	88	GGAGGCATGGGAAAGTCTGATCTGCAAGTCAAAGTAGATTGCCAACAGTG				8q22	PREDICTED: Rattus norvegicus similar to Ras-related protein Rap-1A (Ras-related protein Krev-1) (LOC367063), mRNA.					
Rattus norvegicus	RefSeq	GI_17933495-S	ILMN_282420	TMEM158	NM_057212.1	NM_057212.1		117582	17933495	NM_057212.1	Tmem158	NP_476560.1	ILMN_1371878	0006620672	S	751	TCCACGCTGGTGGCCTGCTTCATGACCCTTGTCATCGTGGTGTGGAGCGT	8	-	128037212-128037261	8q32	Rattus norvegicus transmembrane protein 158 (Tmem158), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_6981201-S	ILMN_285137	MGMT	NM_012861.1	NM_012861.1		25332	6981201	NM_012861.1	Mgmt	NP_036993.1	ILMN_1363572	0000630142	S	458	AAAGCGGCTCGTGCAGTAGGAGGAGCGATGAGGAGCAATCCAGTCCCCAT	1	+	196860161-196860202:196866635-196866642	1q41	Rattus norvegicus O-6-methylguanine-DNA methyltransferase (Mgmt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; The repair of alkylation damage, e.g. the removal of the alkyl group at the O6-position of guanine by O6-alkylguanine-DNA alkyltransferase (AGT) [goid 6307] [evidence IEA]; The repair of alkylation damage, e.g. the removal of the alkyl group at the O6-position of guanine by O6-alkylguanine-DNA alkyltransferase (AGT) [goid 6307] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence IEA]; Any process that modulates the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43281] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: DNA (containing 6-O-methylguanine) + (protein)-L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L-cysteine [goid 3908] [evidence IEA]; Catalysis of the reaction: DNA (containing 6-O-methylguanine) + (protein)-L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L-cysteine [goid 3908] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13027472-S	ILMN_293430	MRS2	NM_024001.1	NM_024001.1		79032	13027472	NM_024001.1	Mrs2	NP_076491.1	ILMN_1360844	0001230497	S	1720	ACTCACAGTCCCGTCAGTCTCGCTCAGGGAGGAAGGCTGGTGGATCACTT	17	+	47142611-47142660	17p11	Rattus norvegicus MRS2 magnesium homeostasis factor homolog (S. cerevisiae) (Mrs2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]	Rpt; MGC93415	Rpt; MGC93415
Rattus norvegicus	RefSeq	GI_62655760	ILMN_293587	PAQR4	NM_001017377.1	NM_001017377.1		302967	62821767	NM_001017377.1	Paqr4	NP_001017377.1	ILMN_1651016	0002450546	S	1730	GGCAAAAGGCGCAGATGTGGAATGGAGGGGTTGGACTCAGGCTTCACTGG	10	-	12993897-12993946	10q12	Rattus norvegicus progestin and adipoQ receptor family member IV (Paqr4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC109357	MGC109357
Rattus norvegicus	RefSeq	GI_9506974-S	ILMN_290157	PITX2	NM_019334.1	NM_019334.1		54284	9506974	NM_019334.1	Pitx2	NP_062207.1	ILMN_1369098	0006220746	S	1114	GGCAACTCTGCCCGAGAAAGACTGAGAATTGTGCTAGAAGGTCGTGCGCA	2	+	226600669-226600718	2q42	Rattus norvegicus paired-like homeodomain transcription factor 2 (Pitx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle [goid 2074] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; The process occurring during the embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure [goid 31076] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Ptx2	Ptx2
Rattus norvegicus	RefSeq	GI_62657918-S	ILMN_272075	RGD1306248	XM_001069417.1	XM_001069417.1		288091	109494421	XM_001069417.1	RGD1306248	XP_001069417.1	ILMN_1351395	0004120605	S	1101	GCCCTGGGTTCACTACATCCCAGTCAAAACAGACCTCTCCGATGTCCAGG				11q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9630046K23 (RGD1306248), mRNA.					
Rattus norvegicus	RefSeq	GI_54607146-S	ILMN_287557	RAC1	NM_134366.1	NM_134366.1		363875	54607146	NM_134366.1	Rac1	NP_599193.1	ILMN_1355225	0001410110	S	496	AAGACAGTGTTTGATGAAGCTATCCGAGCCGTTCTCTGTCCCCCTCCTGT	12	+	11400235-11400284	12p11	Rattus norvegicus ras-related C3 botulinum toxin substrate 1 (Rac1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence IEA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence IMP]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IMP]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell [goid 6972] [evidence IEA]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell [goid 6972] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IMP]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rac family of proteins switching to a GTP-bound active state [goid 16601] [evidence TAS]; The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain [goid 21799] [evidence ISS]; The directed movement of individual interneuron precursors during the embryonic development of the olfactory bulb [goid 21831] [evidence ISS]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence IEA]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phosphoinositide 3-kinase activity [goid 43552] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of phosphoinositide 3-kinase activity [goid 43552] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IMP]; Any process by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a membrane [goid 51668] [evidence ISS]; Any process that modulates the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 60263] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IDA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34869948-S	ILMN_57236	RGD1563657_PREDICTED	XM_221302.3	XM_221302.3		303785	109493660	XM_221302.3	RGD1563657_predicted	XP_221302.2	ILMN_1358878	0002650538	S	4678	GCAGGGGTCCGGGCAAAGGGCAAGCTGGTATTGAGAGCTGGAGATGTAGT	11	-	85787378-85787427	11q23	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434H177.1 - human (fragment) (predicted) (RGD1563657_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664660-S	ILMN_53339	RGD1565948_PREDICTED	XM_574176.2	XM_574176.2		498888	109506824	XM_574176.2	RGD1565948_predicted	XP_574176.2	ILMN_1359105	0000780497	S	939	TGCCCAGGACACCCCTCCACGGTCTCAGGCTCAGGAGTCCAATTACGAAA	18	-	74950761-74950790:74953595-74953614	18q12.3	PREDICTED: Rattus norvegicus similar to CD33 antigen-like 3 (predicted) (RGD1565948_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641250-S	ILMN_273085	SLC5A11	XM_001079626.1	XM_001079626.1		252854	109462830	XM_001079626.1	Slc5a11	XP_001079626.1	ILMN_1364677	0004010546	S	1782	GGAGTCAGTTCAAGAAGCTACGACCAAAGCCCACAGTGACGGCGTGTCCC				1q36	PREDICTED: Rattus norvegicus solute carrier family 5 (sodium/glucose cotransporter), member 11 (Slc5a11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34862183-S	ILMN_161828	LOC366554	XM_345638.1	XM_345638.1			34862183	XM_345638.1	LOC366554		ILMN_2039586	0006510746	S	92	TGAAGGACCTCAACTATACAACAGGACCCTGGACAGCGGTGGGTGCTGGA					Rattus norvegicus similar to zinc finger, HIT domain containing 1; putative cyclin G1 interacting protein; zinc finger protein, subfamily 4A (HIT domain containing), member 1 (LOC366554), mRNA.					
Rattus norvegicus	RefSeq	GI_62651820-S	ILMN_61346	RGD1560687_PREDICTED	XM_576192.2	XM_576192.2		500804	109480319	XM_576192.2	RGD1560687_predicted	XP_576192.1	ILMN_1367581	0003140601	S	793	CTCTACACCGGCCGCCTCAGCACCTCCACCCGAATGAACGTCTAAAGCCA	7	+	13799934-13799983	7q11	PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (predicted) (RGD1560687_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34862823-S	ILMN_61346	RGD1560687_PREDICTED	XM_576192.2	XM_576192.2		500804	109480319	XM_576192.2	RGD1560687_predicted	XP_576192.1	ILMN_1366337	0003360687	S	397	CAGCGTCTCCTCAAGTTGCAGAACGAACTCGGGGGCCGTGCACTCTTCCA	7	+	13799538-13799587	7q11	PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (predicted) (RGD1560687_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654366-S	ILMN_53487	CCDC12_PREDICTED	XM_343490.3	XM_343490.3		363151	109483988	XM_343490.3	Ccdc12_predicted	XP_343491.1	ILMN_1367632	0002810577	S	594	ATCCTGGGGGAGGATAGTCTCAGCAGGGATGGGGTTAGACTGGCTAGCAC	8	+	115088405-115088454	8q32	PREDICTED: Rattus norvegicus coiled-coil domain containing 12 (predicted) (Ccdc12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61740626-S	ILMN_277484	RHOH	NM_001013430.1	NM_001013430.1		305341	61740626	NM_001013430.1	Rhoh	NP_001013448.1	ILMN_1362622	0001980086	S	1317	CTGTGCCAACACAACCTGAGAGATTCCTTGGGGAGCCATGTGAGAAGTCC	14	-	45024607-45024656	14p11	Rattus norvegicus ras homolog gene family, member H (Rhoh), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43124] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43124] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence IEA]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence ISS]	MGC109123	MGC109123
Rattus norvegicus	RefSeq	GI_62650696-S	ILMN_49696	LOC500652	XM_576030.1	XM_576030.1		500652	62650696	XM_576030.1	LOC500652	XP_576030.1	ILMN_1359711	0006130035	S	435	CGGGCCGCCACATCAACCCTCTCAGTGTGTGACTTTCTTGGAGAGAAGAT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700047I17 (LOC500652), mRNA.					
Rattus norvegicus	RefSeq	GI_47576026	ILMN_262993	OLR959	NM_001000486.1	NM_001000486.1		302044	47576026	NM_001000486.1	Olr959	NP_001000486.1	ILMN_1649798	0004850048	S	830	CCTCTGTGGCCCCATTGCTAAACCCTTTCATTTACACCCTAAGGAACCAG	7	-	5103401-5103450	7q11	Rattus norvegicus olfactory receptor 959 (Olr959), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr959	Olr959
Rattus norvegicus	RefSeq	GI_62663883-S	ILMN_273844	USP6NL_PREDICTED	XM_001070749.1	XM_001070749.1		291309	109506155	XM_001070749.1	Usp6nl_predicted	XP_001070749.1	ILMN_1365548	0006420167	S	2320	GCCAGGGGATACGGCAGTTCAGGGTCACCAAAGAGCGGAAAGTTCATCCT				17q12.3	PREDICTED: Rattus norvegicus USP6 N-terminal like (predicted) (Usp6nl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649235-S	ILMN_64449	ZFP352_PREDICTED	XM_233185.4	XM_233185.4		298232	109475110	XM_233185.4	Zfp352_predicted	XP_233185.4	ILMN_1363101	0000630451	S	1271	CCCAGAGCCCTGTGTCCTTGAAGAACCCTCATAACTCAAAGCGATACTGC	5	-	110020942-110020991	5q32	PREDICTED: Rattus norvegicus zinc finger protein 352 (predicted) (Zfp352_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648610	ILMN_303010	RGD1566027_PREDICTED	XM_575766.1	XM_575766.1		500403	62648610	XM_575766.1	RGD1566027_predicted	XP_575766.1	ILMN_1650230	0005130671	S	706	CCCCACTCTGCGTGGCTCCCACAGTGTCCGAGTTCATCCAGCCATATTGA	5	+	22486283-22486332	5q13	PREDICTED: Rattus norvegicus similar to pre-mRNA splicing factor-like (predicted) (RGD1566027_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642071-S	ILMN_49673	LOC365430	XM_345009.2	XM_345009.2		365430	62642071	XM_345009.2	LOC365430	XP_345010.2	ILMN_1354216	0003170047	S	174	CACGACCCTCAGGTTCTGCCCATCAAGATTGGACACGTGCCTTTTCAGTC					PREDICTED: Rattus norvegicus similar to ribosomal protein S11 (LOC365430), mRNA.					
Rattus norvegicus	RefSeq	GI_62656123-S	ILMN_287495	RGD1560444_PREDICTED	XR_009097.1	XR_009097.1		363609	109490797	XR_009097.1	RGD1560444_predicted		ILMN_1366544	0001780736	S	724	GCTGCCAAGGCTACGGGCAAGGTCATTCCAGAGCTAAACAGGAATCTTAT				10q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1560444_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162286-S	ILMN_297723	DDT	NM_024131.1	NM_024131.1		29318	13162286	NM_024131.1	Ddt	NP_077045.1	ILMN_1358668	0003850577	S	283	CACCGCGGAGCAGAACCGCAGCCACAGCTCCAGCTTCTTCAAGTTCCTCA	20	-	13593620-13593669	20p12	Rattus norvegicus D-dopachrome tautomerase (Ddt), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of melanin from other compounds, including tyrosine [goid 6583] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]	Catalysis of the reaction: L-dopachrome = 5,6-dihydroxyindole-2-carboxylate [goid 4167] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: D-dopachrome = 5,6-dihydroxyindole + CO2 [goid 33981] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655773-S	ILMN_47936	LOC501676	XM_577073.1	XM_577073.1		501676	62655773	XM_577073.1	LOC501676	XP_577073.1	ILMN_1372535	0002510411	S	534	GGGGACACTGACTCTGAGAAGTACCCAGTGGTTGAGAGGAAACAGTCCTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310016C16 (LOC501676), mRNA.					
Rattus norvegicus	RefSeq	GI_47577888-S	ILMN_294403	OLR1162	NM_001000870.1	NM_001000870.1		405167	47577888	NM_001000870.1	Olr1162	NP_001000870.1	ILMN_1374585	0001780538	S	326	ATATGGACAGCCTATTACTGGCTGCAATGGCCTACGACCGATGGGTGGCA	8	+	18233707-18233756	8q13	Rattus norvegicus olfactory receptor 1162 (Olr1162), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1162	Olr1162
Rattus norvegicus	RefSeq	GI_21955248-S	ILMN_292264	TNFSF15	NM_145765.1	NM_145765.1		252878	21955248	NM_145765.1	Tnfsf15	NP_665708.1	ILMN_1358015	0002810075	S	558	AGACAGCTACCCTGAGCCTGCCCACCTCCTTACAGGGACCAAGTCTGTGT	5	-	80700331-80700380	5q24	Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 15 (Tnfsf15), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence IEA]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IDA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The stimulation of the activity of NF-kappaB-inducing kinase through phosphorylation at specific residues [goid 7250] [evidence IEA]; The stimulation of the activity of NF-kappaB-inducing kinase through phosphorylation at specific residues [goid 7250] [evidence ISS]; The chemical reactions and pathways involving cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42107] [evidence IEA]; The chemical reactions and pathways involving cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42107] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence IDA]	Interacting selectively with a death receptor [goid 5123] [evidence IDA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_38454305-S	ILMN_57084	MAL2	NM_198786.2	NM_198786.2		362911	77157794	NM_198786.2	Mal2	NP_942081.2	ILMN_1366377	0002940025	S	671	GCGAAGATGGCGACCGTAACACTCCTTGGAAACCGACAGTTGTGTGCTAG	7	+	90976330-90976348:90976349-90976379	7q31	Rattus norvegicus mal, T-cell differentiation protein 2 (Mal2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656140-S	ILMN_50378	RGD1306000_PREDICTED	XM_343905.3	XM_343905.3		363611	109488197	XM_343905.3	RGD1306000_predicted	XP_343906.1	ILMN_1349505	0000870022	S	246	CTTCACCCTTCCTGTTGGGACTATTGACCAATGAGCTGCCGCTTTCGGGG	10	-	45468012-45468061	10q22	PREDICTED: Rattus norvegicus similar to CG8043-PA (predicted) (RGD1306000_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869603-S	ILMN_267830	RGD1562966_PREDICTED	XM_001056123.1	XM_001056123.1		298233	109476755	XM_001056123.1	RGD1562966_predicted	XP_001056123.1	ILMN_1367408	0001240575	S	1182	CCAGGGACAGCATCCAAAGATGACATCAAGCCTCAAGACCCAGAACACTC				5q32	PREDICTED: Rattus norvegicus similar to zinc finger protein 352 (predicted) (RGD1562966_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27718214-S	ILMN_51355	MYF5_PREDICTED	XM_235101.4	XM_235101.4		299766	109480550	XM_235101.4	Myf5_predicted	XP_235101.4	ILMN_2040081	0003780274	S	161	CTGGCGTTTCTCCCTCTCTGCTGAAACCAGGTATCCCACCTGCATCTCTG	7	-	46192264-46192313	7q21	PREDICTED: Rattus norvegicus myogenic factor 5 (predicted) (Myf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652085-S	ILMN_51355	MYF5_PREDICTED	XM_235101.4	XM_235101.4		299766	109480550	XM_235101.4	Myf5_predicted	XP_235101.4	ILMN_1359818	0005080484	S	623	AGCTGCTGAGGGAGCAGGTAGAGAACTATTACAGCCTGCCCGGACAGAGC	7	-	46191802-46191851	7q21	PREDICTED: Rattus norvegicus myogenic factor 5 (predicted) (Myf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32996716-S	ILMN_57004	MICALCL	NM_182669.2	NM_182669.2		293180	78097080	NM_182669.2	Micalcl	NP_872610.2	ILMN_1348791	0003190039	S	1987	GCAGACTGGAGCAGAAACTACGACAGAAAATGCTCAAGGATGAGGGCCAG	1	+	170212718-170212759:170215515-170215522	1q33	Rattus norvegicus MICAL C-terminal like (Micalcl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a mitogen-activated protein kinase [goid 51019] [evidence ISS]; Interacting selectively with a mitogen-activated protein kinase [goid 51019] [evidence ISS]	MGC114239	MGC114239
Rattus norvegicus	RefSeq	GI_62660687-A	ILMN_292497	SLC5A1	NM_013033.1	NM_013033.1		25552	6981551	NM_013033.1	Slc5a1	NP_037165.1	ILMN_1376261	0005860390	S	1467	CCCAAAGCGGGCAGCTCTTTGACTACATCCAGTCCATCACCAGTTACCTG	14	-	83315343-83315392	14q21	Rattus norvegicus solute carrier family 5 (sodium/glucose cotransporter), member 1 (Slc5a1), mRNA.	Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; Uptake of D-glucose into the blood by absorption from the small intestine [goid 1951] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence TAS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence TAS]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in) [goid 5412] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in) [goid 5412] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in) [goid 5412] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	MGC93553; SGLT1	MGC93553; SGLT1
Rattus norvegicus	RefSeq	GI_62646215-S	ILMN_263607	RGD1305020_PREDICTED	XM_001065863.1	XM_001065863.1		311575	109471171	XM_001065863.1	RGD1305020_predicted	XP_001065863.1	ILMN_1374132	0006040671	S	3057	TCCATTGAGAAGGAGCTGGACGTGCTGGAGAGCTGGCTGGACTACACTGG				3q42	PREDICTED: Rattus norvegicus similar to Hepatocellular carcinoma-associated antigen 58 homolog (predicted) (RGD1305020_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652645-S	ILMN_56765	LOC500896	XM_576298.1	XM_576298.1		500896	62652645	XM_576298.1	LOC500896	XP_576298.1	ILMN_1354436	0000130072	S	3637	TGCTGAAGCTGCCATTGCCACGAGTGAACTTACAGCCCTTTCCCCCAGGC				7q34	PREDICTED: Rattus norvegicus similar to KIAA1875 protein (LOC500896), mRNA.					
Rattus norvegicus	RefSeq	GI_62663476-I	ILMN_57336	SERPINB6B_PREDICTED	XM_574016.1	XM_574016.1		364705	62663476	XM_574016.1	Serpinb6b_predicted	XP_574016.1	ILMN_1375624	0002760014	S	171	TTTGAGGCCGGAACACAGGTCCTTCCTCCTCTAGGTTCTGCTTGCTGCCA				17p12	PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B, member 6b (predicted) (Serpinb6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642938-S	ILMN_287410	LOC499530	XM_574854.1	XM_574854.1		499530	62642938	XM_574854.1	LOC499530	XP_574854.2	ILMN_1361144	0002370685	S	341	GCAGATGCGCTGTGGTTGCAGGATGTGCTGTGTTGGAGATGTGGAGAGGC	2	+	48553228-48553277	2q15	PREDICTED: Rattus norvegicus hypothetical protein LOC499530 (LOC499530), mRNA.					
Rattus norvegicus	RefSeq	GI_62652029-S	ILMN_48797	LOC299737	XM_235069.3	XM_235069.3		299737	62652029	XM_235069.3	LOC299737	XP_235069.3	ILMN_1360107	0004280026	S	1589	AAGCTTCGTCCAGCCCCTGGAAACCAGCTCTTGGGAGAAGAGTCATGCAC				7q13	PREDICTED: Rattus norvegicus similar to netrin 4 (LOC299737), mRNA.					
Rattus norvegicus	RefSeq	GI_62651660-S	ILMN_302366	CIP29	NM_001033070.1	NM_001033070.1		362819	74271862	NM_001033070.1	Cip29	NP_001028242.1	ILMN_1375221	0004280368	S	941	CACACTTCCCTACCTATCTGCCTACATACACAGTCATGTGCCTCACAGTG	7	+	2175890-2175939	7q11	Rattus norvegicus cytokine induced protein 29 kDa (Cip29), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing [goid 50733] [evidence ISS]	MGC112623	MGC112623
Rattus norvegicus	RefSeq	GI_34870057-S	ILMN_296592	RGD1561962_PREDICTED	XR_008219.1	XR_008219.1		304201	109496368	XR_008219.1	RGD1561962_predicted		ILMN_1359318	0006380093	S	2398	CTGAGCCTAACGCGGCACCTGGACGAGGATTCGCTACCGTCTTCTGATGA				12p12	PREDICTED: Rattus norvegicus similar to ecotropic viral integration site 5-like (predicted) (RGD1561962_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61657902-S	ILMN_295184	RXRG	NM_031765.1	NM_031765.1		83574	61657902	NM_031765.1	Rxrg	NP_113953.1	ILMN_1371942	0000730402	S	1833	AGGGGCTGAGATCTTTCTGGCAGTTCTTGGGAAGAGTAGCCAAGCCTCTG	13	+	83298591-83298640	13q24	Rattus norvegicus retinoid X receptor gamma (Rxrg), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC109416	MGC109416
Rattus norvegicus	RefSeq	GI_62655767-S	ILMN_288294	SRRM2_PREDICTED	XM_001056343.1	XM_001056343.1		302969	109490273	XM_001056343.1	Srrm2_predicted	XP_001056343.1	ILMN_1349593	0002340026	S	8276	TCTTGTATGCCTTCCCTTGAACCTTGGCAGCATCTTGAGGGGAGAGCTCC				10q12	PREDICTED: Rattus norvegicus serine/arginine repetitive matrix 2 (predicted) (Srrm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639709-S	ILMN_288079	PIH1D1	NM_001024868.1	NM_001024868.1		292898	67846005	NM_001024868.1	Pih1d1	NP_001020039.1	ILMN_1369504	0004810487	S	1152	AGGAGAAAGCAACTGATGGTGTCCATGCCCCTCCTGTCAGCGTCCTCTTG	1	+	95635992-95636000:95636161-95636201	1q22	Rattus norvegicus PIH1 domain containing 1 (Pih1d1), mRNA.				MGC116069	MGC116069
Rattus norvegicus	RefSeq	GI_40018555-S	ILMN_282418	NOB1	NM_199086.1	NM_199086.1		291996	40018555	NM_199086.1	Nob1	NP_954517.1	ILMN_1359081	0004670722	S	1165	GGGACAGCATGTTGGGTGCTGGGAGGAGACGCTTAAATCCCAATGCTTCC	19	-	37278640-37278689	19q12	Rattus norvegicus NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) (Nob1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156557; Nob1	MGC156557; Nob1
Rattus norvegicus	RefSeq	GI_40018595-S	ILMN_302407	MFNG	NM_199110.1	NM_199110.1		315119	40018595	NM_199110.1	Mfng	NP_954541.1	ILMN_1371997	0001740706	S	1630	ACCCTGCCTTCCTACTGTGAACGTGGGTGTGATGGCTGGATCTGGGGAAG	7	-	116717495-116717544	7q34	Rattus norvegicus MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase (Mfng), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	MGC72576	MGC72576
Rattus norvegicus	RefSeq	GI_62659088-S	ILMN_65445	LOC501843	XM_577256.1	XM_577256.1		501843	62659088	XM_577256.1	LOC501843	XP_577256.1	ILMN_1362104	0004810594	S	927	GAGTCTGTCCCTGATTGGAGGATGCCAGAGGCAGGTCGCTGTGTTAGAAC					PREDICTED: Rattus norvegicus similar to expansin, putative (EXP24) (LOC501843), mRNA.					
Rattus norvegicus	RefSeq	GI_62659376-S	ILMN_277383	TMEM9_PREDICTED	XM_001063617.1	XM_001063617.1		289046	109498687	XM_001063617.1	Tmem9_predicted	XP_001063617.1	ILMN_1351557	0001940037	S	1279	GAGCCCTCAAGTTGGACCATAGGACACAAGGCTGTCAGGGGACCCGAGTA				13q13	PREDICTED: Rattus norvegicus transmembrane protein 9 (predicted) (Tmem9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642829-S	ILMN_63109	RGD1559914_PREDICTED	XM_226743.4	XM_226743.4		294691	109464317	XM_226743.4	RGD1559914_predicted	XP_226743.4	ILMN_1368951	0007000110	S	3844	GCCAGGGTGGCAACTAGCAGAGGTTTCCAGAAACTCGAGAACTTAGATCT	2	-	31218835-31218884	2q12	PREDICTED: Rattus norvegicus similar to neuronal apoptosis inhibitory protein (predicted) (RGD1559914_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718542-S	ILMN_276436	LOC684990	XM_001061802.1	XM_001061802.1		684990	109513740	XM_001061802.1	LOC684990	XP_001061802.1	ILMN_1350786	0002470400	S	157	CAGAACCTAGACGCTGGGAGAGAAACATCATCCCCTGGCACTGAACTAAG	Un|NW_047912.1	-	77008-77048:87385-87393		PREDICTED: Rattus norvegicus hypothetical protein LOC684990 (LOC684990), mRNA.					
Rattus norvegicus	RefSeq	GI_47575976-S	ILMN_282644	OLR1458	NM_001000021.1	NM_001000021.1		287347	47575976	NM_001000021.1	Olr1458	NP_001000021.1	ILMN_1365586	0005050022	S	556	TCCTGCACTGATTACCATGTCACTGAGGAGGTGGGCTTTGCTGTTAGCAG	10	+	45060471-45060520	10q22	Rattus norvegicus olfactory receptor 1458 (Olr1458), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1458	Olr1458
Rattus norvegicus	RefSeq	GI_62655120-S	ILMN_67077	LOC501148	XM_580164.1	XM_580164.1		501148	62655120	XM_580164.1	LOC501148	XP_580164.1	ILMN_1367346	0002570324	S	520	ATTGGCAGCCTAACCCTCGTTGTTGCCTGGAGGGGCATAGGCACAGGCTA					PREDICTED: Rattus norvegicus LOC501148 (LOC501148), mRNA.					
Rattus norvegicus	RefSeq	GI_62648185-S	ILMN_268456	RGD1564885_PREDICTED	XR_008176.1	XR_008176.1		500321	109474257	XR_008176.1	RGD1564885_predicted		ILMN_1349856	0000770161	S	4	GCGGTTGGTCCACCCTTAACCACAGATGGTTCACTGTTCACCACTTTTGG				4q42	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (predicted) (RGD1564885_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650566-S	ILMN_66128	LAMB1_PREDICTED	XM_216679.4	XM_216679.4		298941	109478110	XM_216679.4	Lamb1_predicted	XP_216679.4	ILMN_1352808	0001050152	S	5379	AGATAAAGCTCAAGAACTGGTGCGACTGGAAGGAGAGGTGCGCTCACTCC	6	+	49182850-49182899	6q16	PREDICTED: Rattus norvegicus laminin, beta 1 (predicted) (Lamb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959261-S	ILMN_295180	MUTYH	NM_133316.1	NM_133316.1		170841	18959261	NM_133316.1	Mutyh	NP_579850.1	ILMN_1361131	0003140433	S	1457	AACATCGGCGAGGGACCTGCAAGGGTTCCAAAAGGCCCCAGGTGTGTACT	5	+	137114797-137114819:137115708-137115734	5q36	Rattus norvegicus mutY homolog (E. coli) (Mutyh), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The disruption of the bond between the sugar in the backbone and the A or G base, causing the base to be removed and leaving a depurinated sugar [goid 45007] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site [goid 19104] [evidence IDA]; Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site [goid 19104] [evidence ISS]; Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site [goid 19104] [evidence IEA]; Interacting selectively with the mismatch repair complex MutLalpha [goid 32405] [evidence ISS]; Interacting selectively with the mismatch repair complex MutLbeta [goid 32406] [evidence ISS]; Interacting selectively with the mismatch repair complex MutSalpha [goid 32407] [evidence ISS]; Interacting selectively with the mismatch repair complex MutSbeta [goid 32408] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]	Myh; MGC156598	Myh; MGC156598
Rattus norvegicus	RefSeq	GI_62657834-S	ILMN_56964	LOC497681	XM_579374.1	XM_579374.1		497681	62657834	XM_579374.1	LOC497681	XP_579374.1	ILMN_1363234	0001780301	S	3045	CCTGCCTACAGCAAGATCGGATGTGGTCAAGGGAAAGAGCTCCAACCCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013126 (LOC497681), mRNA.					
Rattus norvegicus	RefSeq	GI_6981341-S	ILMN_293749	PCSK2	NM_012746.1	NM_012746.1		25121	6981341	NM_012746.1	Pcsk2	NP_036878.1	ILMN_1370576	0000780010	S	2098	CACCCAGAGTGCCCCATACATCGATCAGGTGGTGAGGGATTACCAATCGA	3	+	132255830-132255879	3q41	Rattus norvegicus proprotein convertase subtilisin/kexin type 2 (Pcsk2), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence IEP]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence IMP]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence IEA]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence ISS]; The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges [goid 30070] [evidence IEA]; The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges [goid 30070] [evidence ISS]; The formation of mature enkephalin, a pentapeptide hormone involved in regulating pain and nociception in the body by proteolytic processing of enkephalin propeptide [goid 34230] [evidence ISS]; The formation of mature islet amyloid polypeptide (IAPP) by posttranslational processing of pro-islet amyloid polypeptide (pro-IAPP) [goid 34231] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663274-S	ILMN_52052	AUH_PREDICTED	XM_341497.3	XM_341497.3		361215	109504683	XM_341497.3	Auh_predicted	XP_341498.1	ILMN_1366845	0005080600	S	1068	GGTTCTCACTACACCTGGAGCAGGCCCGTCTATACTCAAGCCACTGTGCG	17	+	18251589-18251638	17p14	PREDICTED: Rattus norvegicus AU RNA binding protein/enoyl-coenzyme A hydratase (predicted) (Auh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31088855-S	ILMN_297797	OTOP1	NM_181433.1	NM_181433.1		305427	31088855	NM_181433.1	Otop1	NP_852098.1	ILMN_1358158	0002570538	S	1645	TGCAACATCTCGCTTTGGATTCCCCCTGCCTTTGGCTGCCGTCCCGAGTA	14	-	77784647-77784685:77786773-77786783	14q21	Rattus norvegicus otopetrin 1 (Otop1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The series of events in which a gravitational stimulus is received by a cell and converted into a molecular signal [goid 9590] [evidence ISS]; The series of events in which a gravitational stimulus is received by a cell and converted into a molecular signal [goid 9590] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_12621105-S	ILMN_275543	PDZD2	NM_022940.1	NM_022940.1		65034	12621105	NM_022940.1	Pdzd2	NP_075229.1	ILMN_1351111	0006400278	S	8097	ATCCGGAGAGGGGCCACTGGTGATTAAAAGGGTGTACAAAGGCGGTGCGG				2q16	Rattus norvegicus PDZ domain containing 2 (Pdzd2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Papin	Papin
Rattus norvegicus	RefSeq	GI_51948425-S	ILMN_282662	RTCD1	NM_001004227.1	NM_001004227.1		295395	51948425	NM_001004227.1	Rtcd1	NP_001004227.1	ILMN_1362539	0005690673	S	955	CGGGACCAGTCACACTCCACACGCAGACCGCTATACATTTTGCTGAACAG	2	-	212736980-212737029	2q41	Rattus norvegicus RNA terminal phosphate cyclase domain 1 (Rtcd1), mRNA.		Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate [goid 3963] [evidence IEA]	MGC94866	MGC94866
Rattus norvegicus	RefSeq	GI_62663823-S	ILMN_48142	PRSS16_PREDICTED	XM_344596.2	XM_344596.2		364719	62663823	XM_344596.2	Prss16_predicted	XP_344597.2	ILMN_1351377	0002690097	S	1432	ACTCTCCTAGCCTCCGCCTAGGGCGTCAGCTTCTACTTTTAGCTGCTGCT				17q11	PREDICTED: Rattus norvegicus protease, serine, 16 (thymus) (predicted) (Prss16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666566-S	ILMN_60029	LOC302507	XM_217589.3	XM_217589.3		302507	62666566	XM_217589.3	LOC302507	XP_217589.3	ILMN_1350222	0003840605	S	4264	CTCCTGGTCAACTCTCTGAACCTTATGCTAGCCATCAGAAATGGCACCTG				Xq12	PREDICTED: Rattus norvegicus similar to EF-hand domain (C-terminal) containing 2 (LOC302507), mRNA.					
Rattus norvegicus	RefSeq	GI_62664078-S	ILMN_262415	KCTD1	XM_001062225.1	XM_001062225.1		291772	109506955	XM_001062225.1	Kctd1	XP_001062225.1	ILMN_1350048	0001190239	S	1006	CGACTCGACGCATGTCATCAGGTTTCCACTAAACGGCTACTGCCACCTCA				18p13	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 1 (Kctd1), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647895-S	ILMN_65592	LOC362408	XM_342730.2	XM_342730.2		362408	62647895	XM_342730.2	LOC362408	XP_342731.2	ILMN_1364609	0001770133	S	606	ACCAGATGCCCTTCAACAGAGGAATGGATACACGAAAATGTGGTGACATC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC362408), mRNA.					
Rattus norvegicus	RefSeq	GI_62642176-S	ILMN_52351	LOC499344	XM_574654.1	XM_574654.1		499344	62642176	XM_574654.1	LOC499344	XP_574654.1	ILMN_1366375	0001940035	S	3384	CCCAAGTCCTCAGAACAGTGAAGAACAGGAGGCTAGAGAAGTAGCCCAGC				1q52	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC499344), mRNA.					
Rattus norvegicus	RefSeq	GI_62649158-A	ILMN_264261	MLLT3	NM_053718.1	NM_053718.1		114510	16758531	NM_053718.1	Mllt3	NP_446170.1	ILMN_1376678	0006450100	S	1417	GAGTTACCTGGAGACATCTGGAACATCCTGAGGGTACAACAACTGGACGC				5q32	Rattus norvegicus myeloid/lymphoid or mixed lineage-leukemia translocation to 3 homolog (Drosophila) (Mllt3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whereby segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes [goid 7379] [evidence ISS]; The process whereby segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes [goid 7379] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]		Af9; Af-9	Af9; Af-9
Rattus norvegicus	RefSeq	GI_62638255-S	ILMN_274536	PERP_PREDICTED	XM_001072627.1	XM_001072627.1		292949	109460495	XM_001072627.1	Perp_predicted	XP_001072627.1	ILMN_1349795	0001690301	S	1554	ATGAGGTCGGGTAGGAAGGCCTATGAGGGTTACCATTCAGACATCCCGGG				1p12	PREDICTED: Rattus norvegicus PERP, TP53 apoptosis effector (predicted) (Perp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666546-S	ILMN_58969	TM4SF2_MAPPED	XM_343768.3	XM_343768.3		363447	109510456	XM_343768.3	Tm4sf2_mapped	XP_343769.3	ILMN_1370371	0000610471	S	643	AACTACAACGGCAAAGATGAAAGGAGCCGGGCAGTGGACCATGTGCAGCG	X	-	24375634-24375683	Xq13	PREDICTED: Rattus norvegicus transmembrane 4 superfamily member 2 (mapped) (Tm4sf2_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62663359-S	ILMN_290446	ZFP169_PREDICTED	XM_001057444.1	XM_001057444.1		306816	109505565	XM_001057444.1	Zfp169_predicted	XP_001057444.1	ILMN_1363941	0006400537	S	1232	TCATTGGGCACCAGAAGACGCATACAGGGGAAAAGCCCTATGCCTGTCCC				17p14	PREDICTED: Rattus norvegicus zinc finger protein 169 (predicted) (Zfp169_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.34626	ILMN_160941	RN.34626	Rn.34626		Rn.34626		8511781	BE119676			ILMN_1530563	0000580064	S	466	TATAGAATCGAGCTCTGATTTCATCCCTGAAGTTCTGGTTTACAAAGTTT					UI-R-CA0-baz-f-06-0-UI.s1 UI-R-CA0 Rattus norvegicus cDNA clone UI-R-CA0-baz-f-06-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_47576326-S	ILMN_282828	OLR1523	NM_001000713.1	NM_001000713.1		404962	47576326	NM_001000713.1	Olr1523	NP_001000713.1	ILMN_1350237	0000520176	S	795	TCCCTTGGACAAAGCCGTGTCCATCAGCTACACAGTCTTGACCCCCATGC	10	-	76201242-76201291	10q26	Rattus norvegicus olfactory receptor 1523 (Olr1523), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr04	tpcr04
Rattus norvegicus	RefSeq	GI_62666022-S	ILMN_54396	LOC294412	XM_215399.3	XM_215399.3		294412	62666022	XM_215399.3	LOC294412	XP_215399.3	ILMN_1373758	0002640133	S	4983	CTGCATAGCCATCCTCAAACATCTGCAGCGAGACATTCTCCACCACACCC					PREDICTED: Rattus norvegicus similar to OTTHUMP00000040350 (LOC294412), mRNA.					
Rattus norvegicus	RefSeq	GI_62666969-S	ILMN_285305	RGD1560267_PREDICTED	XM_001056683.1	XM_001056683.1		302639	109511801	XM_001056683.1	RGD1560267_predicted	XP_001056683.1	ILMN_1366936	0006290450	S	1210	GCACTGGATGAAGAGGAAATGAGGGAATCGTGGAGTAAGAAGTCCCCACG				Xq22	PREDICTED: Rattus norvegicus similar to ring finger protein 168 (predicted) (RGD1560267_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658978-S	ILMN_59038	RFC5_PREDICTED	XM_222214.4	XM_222214.4		304528	109496046	XM_222214.4	Rfc5_predicted	XP_222214.4	ILMN_1352068	0003710095	S	1229	TTGAGTACAGGCTCTCTGTCGGCACCAGTGAGAAGATCCAGCTGAGCTCC	12	+	40404056-40404059:40404903-40404948	12q16	PREDICTED: Rattus norvegicus replication factor C (activator 1) 5 (predicted) (Rfc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646086-S	ILMN_297317	RGD1563510_PREDICTED	XM_001063400.1	XM_001063400.1		362240	109471087	XM_001063400.1	RGD1563510_predicted	XP_001063400.1	ILMN_1364965	0002680484	S	1558	AGCAGCAACCTGCAGCCCTCCGCTTCCCTCCAGACAGGAAGTCACAGTAA				3q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 8430427H17 gene (predicted) (RGD1563510_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659349-S	ILMN_63317	PPP1R12B_PREDICTED	XM_222656.3	XM_222656.3		304813	62659349	XM_222656.3	Ppp1r12b_predicted	XP_222656.3	ILMN_1374167	0005420079	S	3161	TTCAGGGGCCAGTGCTCTGGAGGGCTGGTTGGAGTCAGGAGGCAGTAACC				13q13	PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 12B (predicted) (Ppp1r12b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646669-S	ILMN_52961	MLL5	XM_231287.4	XM_231287.4		311968	109471590	XM_231287.4	Mll5	XP_231287.4	ILMN_1361932	0006550079	S	5664	CACCCACCTCATCAAGGACCTCCACTTTTTCCTGTGAGTGTTCATCCGGC	4	-	7043170-7043219	4q11	PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) (Mll5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655795	ILMN_54920	LOC497669	XM_579679.1	XM_579679.1		497669	62655795	XM_579679.1	LOC497669	XP_579679.1	ILMN_1650161	0000050167	S	3047	CTGCTAGTGGGGATACCATGCTGGACACGACAGGGGATGTCACTGCGGAA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_152844 (LOC497669), mRNA.					
Rattus norvegicus	RefSeq	GI_62654598-S	ILMN_262375	RGD1560901_PREDICTED	XR_007568.1	XR_007568.1		367200	109486511	XR_007568.1	RGD1560901_predicted		ILMN_1365430	0006420463	S	696	GGCAGGGGATCACCATCGGCAATGAGCGGTTCCATTGTCCAAAAGTTCTC				9q11	PREDICTED: Rattus norvegicus similar to actin, alpha 1, skeletal muscle (predicted) (RGD1560901_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654287-S	ILMN_49612	DAG1	XM_343483.3	XM_343483.3		114489	109483955	XM_343483.3	Dag1	XP_343484.1	ILMN_1373596	0006900592	S	4899	TGGCCCAGAGTGGCTTGTTGTCATAGCAACTGGAGGCAGTGGGGCAGTGA	8	-	113471092-113471141	8q32	PREDICTED: Rattus norvegicus dystroglycan 1 (Dag1), mRNA.	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IMP]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that includes alpha- and beta-dystroglycan, which are alternative products of the same gene; the laminin-binding component of the dystrophin-associated glycoprotein complex, providing a link between the subsarcolemmal cytoskeleton (in muscle cells) and the extracellular matrix. Alpha-dystroglycan is an extracellular protein binding to alpha-laminin and to beta-dystroglycan; beta-dystroglycan is a transmembrane protein which binds alpha-dystroglycan and dystrophin [goid 16011] [evidence IEA]; A protein complex that includes alpha- and beta-dystroglycan, which are alternative products of the same gene; the laminin-binding component of the dystrophin-associated glycoprotein complex, providing a link between the subsarcolemmal cytoskeleton (in muscle cells) and the extracellular matrix. Alpha-dystroglycan is an extracellular protein binding to alpha-laminin and to beta-dystroglycan; beta-dystroglycan is a transmembrane protein which binds alpha-dystroglycan and dystrophin [goid 16011] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form. An epithelial sheet is a flat surface consisting of closely packed epithelial cells [goid 2011] [evidence IEA]; The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form. An epithelial sheet is a flat surface consisting of closely packed epithelial cells [goid 2011] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62657678-S	ILMN_62425	ETS2_MAPPED	XM_239510.4	XM_239510.4		304063	109492951	XM_239510.4	Ets2_mapped	XP_239510.4	ILMN_1363372	0005390041	S	1639	CAAGAGAGGAGTGACCCAGTTGAGCAAGGCAAACCAGTTATTCCTGCGGC	11	+	36026044-36026093	11q11	PREDICTED: Rattus norvegicus v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) (mapped) (Ets2_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62649824-S	ILMN_49439	PDIK1L_PREDICTED	XM_233567.4	XM_233567.4		313609	109475630	XM_233567.4	Pdik1l_predicted	XP_233567.2	ILMN_1357929	0001980332	S	1466	GGCATTTCTGTGGAAGAGGAGGTTTGCATGCTGGTAATGCAGCCTTCGCG	5	-	153023499-153023548	5q36	PREDICTED: Rattus norvegicus PDLIM1 interacting kinase 1 like (predicted) (Pdik1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642168-S	ILMN_52002	DKK1_PREDICTED	XM_219804.4	XM_219804.4		293897	109460026	XM_219804.4	Dkk1_predicted	XP_219804.3	ILMN_1364952	0004920193	S	1070	GCTCCACACCTGCCAGAGACACTAAAACCAACAGCCTAAATGCGATGGAC	1	-	234394065-234394090:234394091-234394114	1q52	PREDICTED: Rattus norvegicus dickkopf homolog 1 (Xenopus laevis) (predicted) (Dkk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659883-S	ILMN_53591	LOC289334	XM_223013.3	XM_223013.3		289334	109498323	XM_223013.3	LOC289334	XP_223013.2	ILMN_1373416	0000770136	S	1962	GGTTCCCCTAGCCTCCAAGATAAACCGCTGCTATGACAAGGGGGCAGCAG	13	-	98810832-98810881	13q26	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ35728 (LOC289334), mRNA.					
Rattus norvegicus	RefSeq	GI_27681080-S	ILMN_66072	RGD1560815_PREDICTED	XM_225924.2	XM_225924.2		291550	109506715	XM_225924.2	RGD1560815_predicted	XP_225924.1	ILMN_1361105	0001170440	S	46	CTGCTCAACGATGACGAGGTGACTGTCGCGGAGGATGAGATCAGTGCCCT	18	-	61834817-61834866	18q12.1	PREDICTED: Rattus norvegicus similar to acidic ribosomal phosphoprotein P1 (predicted) (RGD1560815_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648350-S	ILMN_289397	RGD1564868_PREDICTED	XM_001075561.1	XM_001075561.1		362465	109474509	XM_001075561.1	RGD1564868_predicted	XP_001075561.1	ILMN_1359016	0006650458	S	3426	ATTGGTGGTGAAGAGAGCATTGGTAGAGCCTGTGGAGTGCAGGGGAGCAG				4q44	PREDICTED: Rattus norvegicus similar to ARG99 homolog (predicted) (RGD1564868_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663603-S	ILMN_58788	HIST1H2BM_PREDICTED	XM_341530.2	XM_341530.2		361247	62663603	XM_341530.2	Hist1h2bm_predicted	XP_341531.2	ILMN_1351946	0006450471	S	652	AATCAGTCCCGGAATTAGCCAGAGCCACTGGGTCCGTTGAGAGTGCAGTC				17q11	PREDICTED: Rattus norvegicus histone 1, H2bm (predicted) (Hist1h2bm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27686432-S	ILMN_58788	HIST1H2BM_PREDICTED	XM_341530.2	XM_341530.2		361247	62663603	XM_341530.2	Hist1h2bm_predicted	XP_341531.2	ILMN_1359983	0001990075	S	964	TCTACGCGCTCAAGCGCCAGGGCCGTACCCTCTATGGCTTCGGTGGCTAA				17q11	PREDICTED: Rattus norvegicus histone 1, H2bm (predicted) (Hist1h2bm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577798-S	ILMN_273777	OLR1230	NM_001000595.1	NM_001000595.1		367060	47577798	NM_001000595.1	Olr1230	NP_001000595.1	ILMN_1367668	0006760451	S	758	TTTTCTATGGATCCGGACTGCTTGCTTATGTCAAGCCATCCTCTGCCGAG	8	+	40494649-40494698	8q22	Rattus norvegicus olfactory receptor 1230 (Olr1230), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr8-40502658-40503599_ORF; Olr1230	ratchr8-40502658-40503599_ORF; Olr1230
Rattus norvegicus	RefSeq	GI_62656940	ILMN_288508	STARD3	NM_001014229.1	NM_001014229.1		363675	62079192	NM_001014229.1	Stard3	NP_001014251.1	ILMN_1649917	0003830102	S	1818	GGAAGCCCTCTAGTCCAGGTTTTGTACCATTAGGGAAGGGGTCTGGGACC				10q31	Rattus norvegicus StAR-related lipid transfer (START) domain containing 3 (Stard3), mRNA.		The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]	Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence IEA]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence ISS]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302052-S	ILMN_276841	SELE	NM_138879.1	NM_138879.1		25544	20302052	NM_138879.1	Sele	NP_620234.1	ILMN_1367960	0000060687	S	2992	GGTCCTTGCTGATTGGGGTTGGTGGGAAAAGCCAACAGTGAACAGGAAGT	13	+	79822481-79822530	13q22	Rattus norvegicus selectin, endothelial cell (Sele), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641129	ILMN_48262	LOC499243	XM_579935.1	XM_579935.1		499243	62641129	XM_579935.1	LOC499243	XP_579935.1	ILMN_1650675	0000940324	S	240	GGCCTTCACATTGGGGCTCTGTGTCCCTAGCTTTGCTGATGCCGGAGACT					PREDICTED: Rattus norvegicus LOC499243 (LOC499243), mRNA.					
Rattus norvegicus	RefSeq	GI_25742854-S	ILMN_274694	F7	NM_152846.1	NM_152846.1		260320	25742854	NM_152846.1	F7	NP_690059.1	ILMN_1358625	0005390577	S	1186	ACTTGGTATCTGACAGGTGTGGTCAGCTGGGGGGAGGGCTGTGCAGCTAT	16	-	81348783-81348832	16q12.5	Rattus norvegicus coagulation factor VII (serum prothrombin conversion accelerator) (F7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; A pathway of blood coagulation in which the earlier stages of the cascade are bypassed and the activation of factor X to factor Xa is effected by the combination of factor VIIa + thromboplastin; this second pathway occurs when tissue extracts are present in optimal amounts and is much more rapid than the intrinsic pathway [goid 7598] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62659957-S	ILMN_58238	RPS6KC1	XM_213966.4	XM_213966.4		289342	109498363	XM_213966.4	Rps6kc1	XP_213966.4	ILMN_1363253	0006590279	S	2935	CACAGAAGAAACTGAAGCCTGTGATTGGTGGAGCCTGGGTGCTGTCCTCT	13	-	106852067-106852116	13q27	PREDICTED: Rattus norvegicus ribosomal protein S6 kinase, polypeptide 1 (Rps6kc1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865989-A	ILMN_294364	PHF7	NM_001012211.1	NM_001012211.1		364510	58865989	NM_001012211.1	Phf7	NP_001012211.1	ILMN_1376784	0006760086	S	1312	TGCCCAGGACAGTGAGGTACGAGAGACCCTTGCCGCATCAGTTTGGAGAG	16	-	6671495-6671544	16p16	Rattus norvegicus PHD finger protein 7 (Phf7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664214-S	ILMN_48050	RGD1562552_PREDICTED	XM_574124.2	XM_574124.2		498840	109506439	XM_574124.2	RGD1562552_predicted	XP_574124.1	ILMN_1372522	0001230020	S	540	CTCGCTGTCTCAGGAGGTGCTCCGGCACATTCGGCAAGAAGAAAAGGAGG	18	-	28355694-28355743	18p11	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC340061 (predicted) (RGD1562552_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645320-S	ILMN_53046	UBE2E3_PREDICTED	XM_215754.4	XM_215754.4		295686	109468348	XM_215754.4	Ube2e3_predicted	XP_215754.2	ILMN_1371910	0006590181	S	2104	GTGAAGGAGCAGAAGGCCTCTTCCCACTGTGCTGCGGATCTTTATAGCCT	3	+	61610273-61610322	3q24	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast) (predicted) (Ube2e3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24025636-S	ILMN_274684	HSPA4	NM_153629.1	NM_153629.1		266759	24025636	NM_153629.1	Hspa4	NP_705893.1	ILMN_1356707	0000060070	S	4221	AAACATTTGTGTGTGGGGGTGGGAGGGTTTGGGTGTCGGGATGGGGAATG	10	-	38705878-38705927	10q22	Rattus norvegicus heat shock protein 4 (Hspa4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Hsp70; Hsp110; irp94	Hsp70; Hsp110; irp94
Rattus norvegicus	Unigene	Rn.34667	ILMN_160827	RN.34667	Rn.34667		Rn.34667		41116361	CK603042			ILMN_1530282	0003140672	S	655	TTTTAGAAGAAAATAGAGAAATTCAGGACCTCATTACAGATTATTCAGCA					AGENCOURT_17899757 NIH_MGC_234 Rattus norvegicus cDNA clone IMAGE:7193237 5', mRNA					
Rattus norvegicus	RefSeq	GI_62646418-S	ILMN_61246	LOC367088	XM_345942.2	XM_345942.2		367088	62646418	XM_345942.2	LOC367088	XP_345943.2	ILMN_1369671	0002760364	S	204	CACAGAGAACAGGCAGTGAGGGCGGAAGGCGAGGTGGCGGGACCAGAGAG				3q42	PREDICTED: Rattus norvegicus similar to Chain A, Solution Structure Of The Bola-Like Protein From Mus Musculus (predicted) (LOC367088), mRNA.					
Rattus norvegicus	RefSeq	GI_62718039-S	ILMN_276059	DUS3L	NM_001034923.1	NM_001034923.1		301122	77917547	NM_001034923.1	Dus3l	NP_001030095.1	ILMN_1361149	0003780458	S	1780	TGGGCCTGCTGGAACGACTGCCACAGAGGATCAATGAAAGGCCACCCTAC	Un|NW_047865.1	-	313643-313692		Rattus norvegicus dihydrouridine synthase 3-like (S. cerevisiae) (Dus3l), mRNA.		The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor [goid 17150] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	MGC124806	MGC124806
Rattus norvegicus	RefSeq	GI_62657205-S	ILMN_48970	RGD1561299_PREDICTED	XM_573208.2	XM_573208.2		498012	109489184	XM_573208.2	RGD1561299_predicted	XP_573208.2	ILMN_1351582	0004230142	S	1953	GCTCTGCCTCATCCTGGCACTGGGCCTCAGGTTGCACTACTTGGAAAGAC	10	+	95397719-95397768	10q32.1	PREDICTED: Rattus norvegicus similar to Angiotensin converting enzyme, isoform 1 (predicted) (RGD1561299_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649762-S	ILMN_68984	RGD1563208_PREDICTED	XM_575922.2	XM_575922.2		500558	109475577	XM_575922.2	RGD1563208_predicted	XP_575922.1	ILMN_1368679	0002360601	S	1660	CTGAGGAGAAAGTGGTAGCCAACATGGAAGAACGCCAGCACCAGGTCCAC	5	-	151112683-151112732	5q36	PREDICTED: Rattus norvegicus similar to Glucocorticoid modulatory element binding protein 1 (predicted) (RGD1563208_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21071081-S	ILMN_265384	MYOG	NM_017115.2	NM_017115.2		29148	21071081	NM_017115.2	Myog	NP_058811.2	ILMN_1353397	0002030286	S	1177	AGTCTCTGGGGGGCAAGCATTTGCAGTGGATATTGGGAACCTTCCAGTGC	13	+	47246030-47246079	13q13	Rattus norvegicus myogenin (Myog), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence IEA]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665742-S	ILMN_63861	LOC499409	XM_579963.1	XM_579963.1		499409	62665742	XM_579963.1	LOC499409	XP_579963.1	ILMN_1351914	0006370068	S	420	CAAAGAGGAGGGGTCTTGGGGATGTAGCTCGGGTGGAAGAGGGCTTAAAG					PREDICTED: Rattus norvegicus LOC499409 (LOC499409), mRNA.					
Rattus norvegicus	RefSeq	GI_62660800-S	ILMN_55959	LOC498412	XM_573659.2	XM_573659.2		498412	109500041	XM_573659.2	LOC498412	XP_573659.2	ILMN_1368011	0003120168	S	1563	GAGTCCATGGCATCCCCAGTGATCACACTTAGAGGAGCTGGTGCAGAAGG	14	-	89549589-89549607:89549608-89549638	14q21	PREDICTED: Rattus norvegicus similar to Sad1 and UNC84 domain containing 1 (LOC498412), mRNA.					
Rattus norvegicus	RefSeq	GI_62643899-S	ILMN_47908	LOC365869	XM_345249.2	XM_345249.2		365869	62643899	XM_345249.2	LOC365869	XP_345250.2	ILMN_1354909	0004070075	S	4166	TGCACCAAAACGCCCATTCTTCCCTCCCAGGTACTGATGGAAATCTGGGG				2q34	PREDICTED: Rattus norvegicus similar to KIAA0460 protein (predicted) (LOC365869), mRNA.					
Rattus norvegicus	RefSeq	GI_62663130-A	ILMN_276985	ZFP367	NM_001012051.1	NM_001012051.1		306695	58865677	NM_001012051.1	Zfp367	NP_001012051.1	ILMN_1376492	0003800601	S	2681	GCCTTGGAGAGTGGAGGTAAGAAATGTCTTGAGAAGCGCCAATGTGAAAC	17	+	6510457-6510506	17p14	Rattus norvegicus zinc finger protein 367 (Zfp367), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865351-A	ILMN_273752	NUBP2	NM_001011891.1	NM_001011891.1		287125	58865351	NM_001011891.1	Nubp2	NP_001011891.1	ILMN_1376519	0002120725	S	1140	ACACAGGAGCTGGCCCTTTCTCACCCCGACTGACCCTGAGTGCCCACACA	10	-	14131511-14131560	10q12	Rattus norvegicus nucleotide binding protein 2 (Nubp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663222-S	ILMN_272097	FGFR4	XM_001066753.1	XM_001066753.1		25114	109505413	XM_001066753.1	Fgfr4	XP_001066753.1	ILMN_1364341	0000360746	S	2519	GAGTACCTTGACCTCCGCCTGACCTTTGGACCCTATTCCCCCAACAATGG				17p14	PREDICTED: Rattus norvegicus fibroblast growth factor receptor 4 (Fgfr4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The close range interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ [goid 1759] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556909-S	ILMN_278622	SNX10	NM_001013085.1	NM_001013085.1		297096	61556909	NM_001013085.1	Snx10	NP_001013103.1	ILMN_1364920	0000130408	S	1091	ACGGCACAGGAGACTGCTTCTCTGACTCGTGGCTCTTGCTTTGTGGGGAC	4	+	79852906-79852955	4q24	Rattus norvegicus sorting nexin 10 (Snx10), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]	MGC109202	MGC109202
Rattus norvegicus	RefSeq	GI_62078676-S	ILMN_287428	CCDC47	NM_001013974.1	NM_001013974.1		303606	62078676	NM_001013974.1	Ccdc47	NP_001013996.1	ILMN_1348811	0003450672	S	2822	CCGCAGTAACAGTGAGGTGTGGTGAAAGCTGTGTGCTGTTGCCTTGGGGA	10	-	95593923-95593972	10q32.1	Rattus norvegicus coiled-coil domain containing 47 (Ccdc47), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13929039-S	ILMN_301389	KCND3	NM_031739.1	NM_031739.1		65195	13929039	NM_031739.1	Kcnd3	NP_113927.1	ILMN_1350901	0007050446	S	4541	CAGCTAGTAAGGCAACAACCAGGATACCACGTTCTTCTGGAGACCAAGAG	2	+	200924414-200924463	2q34	Rattus norvegicus potassium voltage gated channel, Shal-related family, member 3 (Kcnd3), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IMP];  [goid 5250] [evidence IMP]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Kv4.3	Kv4.3
Rattus norvegicus	RefSeq	GI_62659796-S	ILMN_69617	FAM36A_PREDICTED	XM_213949.2	XM_213949.2		289278	62659796	XM_213949.2	Fam36a_predicted	XP_213949.1	ILMN_1371876	0001740592	S	1089	GCTCTCAGCCATTGTCACTGTGAAAAACCAGAGACTGGAATTCTGCCAGC				13q26	PREDICTED: Rattus norvegicus family with sequence similarity 36, member A (predicted) (Fam36a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666660	ILMN_65807	LOC501531	XM_576931.1	XM_576931.1		501531	62666660	XM_576931.1	LOC501531	XP_576931.1	ILMN_1650899	0004210040	S	241	TTCCAGGAAGACTCACCTGGAGTGAAACAGGAGCCCTGTGCTTTCACACC					PREDICTED: Rattus norvegicus similar to zinc finger protein 637 (LOC501531), mRNA.					
Rattus norvegicus	RefSeq	GI_62661165-S	ILMN_64564	LOC498463	XM_573720.1	XM_573720.1		498463	62661165	XM_573720.1	LOC498463	XP_573720.1	ILMN_1350902	0001050053	S	905	GACAACACCTCCCGCATTTCAGTCCTTGTAACCGTTCCAATCTTGGACTG				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F09 (LOC498463), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577970-S	ILMN_296697	OLR1108	NM_001000993.1	NM_001000993.1		405353	47577970	NM_001000993.1	Olr1108	NP_001000993.1	ILMN_1361106	0004590154	S	725	CTTCTCACCTCATAGCCGTGGTCTTGTTTTTTGGGTCGGGCTTGGTTCGT	7	+	137186962-137187011	7q36	Rattus norvegicus olfactory receptor 1108 (Olr1108), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1108	Olr1108
Rattus norvegicus	RefSeq	GI_62643656-S	ILMN_58467	LOC502536	XM_578023.1	XM_578023.1		502536	62643656	XM_578023.1	LOC502536	XP_578023.1	ILMN_1352257	0006200164	S	1134	CCAACAGCTGAAGGAGCCAATCTTTTCATCGCATCTGTCAGTCCCAGGGG					PREDICTED: Rattus norvegicus similar to DNA segment, Chr 18, Wayne State University 98, expressed (LOC502536), mRNA.					
Rattus norvegicus	RefSeq	GI_27465622-S	ILMN_291465	UNC13C	NM_173146.1	NM_173146.1		286931	27465622	NM_173146.1	Unc13c	NP_775169.2	ILMN_1351183	0002940411	S	6524	GGGAGCTACGGGGCATGGTACCCTCTCCTGAAAAATCTCTCTATGGATGA	8	-	78279160-78279209	8q24	Rattus norvegicus unc-13 homolog C (C. elegans) (Unc13c), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence TAS]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Unc13h3	Unc13h3
Rattus norvegicus	RefSeq	GI_16758489-S	ILMN_275900	CHEK2	NM_053677.1	NM_053677.1		114212	16758489	NM_053677.1	Chek2	NP_446129.1	ILMN_1370114	0002260270	S	1695	AGCTCGAAGCGCCTGGCCGTGTGTAAGGCTGTGTTGTGAGCGTTGGACAT	12	-	45933904-45933915:45933916-45933953	12q16	Rattus norvegicus CHK2 checkpoint homolog (S. pombe) (Chek2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]	A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A cascade of processes initiated by the detection of DNA damage and resulting in the induction of apoptosis (programmed cell death) [goid 8630] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEA]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence ISS]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IDA]	Rad53; Chk2	Rad53; Chk2
Rattus norvegicus	RefSeq	GI_47777743-S	ILMN_273616	OLR1059	NM_001001362.1	NM_001001362.1		288831	47777743	NM_001001362.1	Olr1059	NP_001001362.1	ILMN_1364793	0002630280	S	416	GTCACCTACTTGTCCTCAGCTCCTGGGGAACTGGGTTTTTAGTCATCTTC	7	-	7959955-7960004	7q11	Rattus norvegicus olfactory receptor 1059 (Olr1059), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1059	Olr1059
Rattus norvegicus	RefSeq	GI_62657500-S	ILMN_282364	NARF	NM_001039207.1	NM_001039207.1		360681	85861199	NM_001039207.1	Narf	NP_001034296.1	ILMN_1356642	0005270592	S	1076	CATGAGGTCACCCTTGAGAAGAACGGGGAGGTCTTACTGCGCTTTGCTGC	10	+	110490507-110490556	10q32.3	Rattus norvegicus nuclear prelamin A recognition factor (Narf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope. They are classified as lamins A, B and C [goid 5638] [evidence ISS]; The volume enclosed by the nuclear inner membrane [goid 31981] [evidence ISS]		Interacting selectively with lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope [goid 5521] [evidence ISS]	MGC125093; RGD1310894	MGC125093; RGD1310894
Rattus norvegicus	RefSeq	GI_24475801-S	ILMN_285732	GPHA2	NM_133619.2	NM_133619.2		171158	24475801	NM_133619.2	Gpha2	NP_598303.1	ILMN_1357380	0000540114	S	663	TGGAGTCTGAAGATGGGGCTTCGCCTCTGTTTACCTGGCCTCCTCAGCAG	1	+	209002478-209002527	1q43	Rattus norvegicus glycoprotein hormone alpha 2 (Gpha2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Zsig51	Zsig51
Rattus norvegicus	RefSeq	GI_40018593-S	ILMN_264593	POPDC2	NM_199113.1	NM_199113.1		360718	40018593	NM_199113.1	Popdc2	NP_954544.1	ILMN_1351846	0006020017	S	1899	CAAGCACGGCTATGAACTCACGTCACAGGGTTGCGAGGTTCCAGTGAGCT	11	-	64154562-64154611	11q21	Rattus norvegicus popeye domain containing 2 (Popdc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]			MGC72601	MGC72601
Rattus norvegicus	RefSeq	GI_62640689-S	ILMN_49670	SNRPA1_PREDICTED	XM_214963.3	XM_214963.3		292997	62640689	XM_214963.3	Snrpa1_predicted	XP_214963.2	ILMN_1360629	0002340593	S	695	CGCGTCAACACTGGCTGAAGTTGAGAGGCTGAAGGGCTTGCTGCAGTCTG					PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein polypeptide A' (predicted) (Snrpa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645639	ILMN_68527	TMEM87A_PREDICTED	XM_345422.3	XM_345422.3		366170	109468695	XM_345422.3	Tmem87a_predicted	XP_345423.3	ILMN_1650235	0003120458	S	1296	GTCGGACTGGCGGGAGCTGTGGGTAGATGATGCCATTTGGAGATTGCTGT	3	-	106857443-106857489:106858406-106858408	3q35	PREDICTED: Rattus norvegicus transmembrane protein 87A (predicted) (Tmem87a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577126-S	ILMN_271115	OLR756	NM_001000614.1	NM_001000614.1		404803	47577126	NM_001000614.1	Olr756	NP_001000614.1	ILMN_1366551	0002360609	S	753	TGGGCCAGTCATTTTCATCTATCTGTGTCCAGTTAGCATCACTTGGGTTG	3	+	96999943-96999992	3q34	Rattus norvegicus olfactory receptor 756 (Olr756), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr756	Olr756
Rattus norvegicus	RefSeq	GI_34863396-S	ILMN_161830	LOC366588	XM_345652.1	XM_345652.1			34863396	XM_345652.1	LOC366588		ILMN_2040442	0001260278	S	861	GGAGGACTGTGTGGAGATGGTGGCCTCAGGTGGCTGGAACGATGTGGCCT					Rattus norvegicus similar to hypothetical protein MGC3279 similar to collectins (LOC366588), mRNA.					
Rattus norvegicus	RefSeq	GI_62638301-S	ILMN_272756	RGD1562454_PREDICTED	XM_001071739.1	XM_001071739.1		292938	109460475	XM_001071739.1	RGD1562454_predicted	XP_001071739.1	ILMN_1354018	0004730671	S	169	CCTCAGGCCATCAAACACAGGATGAGAGAGGGCCCCAGCTGCAAATTCAT				1p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1562454_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663138-S	ILMN_65273	LOC290964	XM_214409.3	XM_214409.3		290964	62663138	XM_214409.3	LOC290964	XP_214409.3	ILMN_1362465	0000840156	S	11	CCAGCAGCCGATTTATCTGAGTTGCTTAGCGGGCTTGAATGATTGGCCTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 8430426H19 (LOC290964), mRNA.					
Rattus norvegicus	RefSeq	GI_62652242-S	ILMN_59293	LOC503144	XM_578665.1	XM_578665.1		503144	62652242	XM_578665.1	LOC503144	XP_578665.1	ILMN_1366597	0003440142	S	1043	GAAGCTCGGATCTACTTTAAAACCTTCAAGACTGGCTCTACCTGAAAGCC					PREDICTED: Rattus norvegicus similar to sentrin 15 (LOC503144), mRNA.					
Rattus norvegicus	RefSeq	GI_62639786-S	ILMN_278751	GTF2H1_PREDICTED	XM_001080816.1	XM_001080816.1		361580	109461962	XM_001080816.1	Gtf2h1_predicted	XP_001080816.1	ILMN_1357684	0006130056	S	2406	CTGTGCTCAGCCATTGGGAAACAGTTGTCAGAAGACGCCACTGGGCCTGT				1q22	PREDICTED: Rattus norvegicus general transcription factor II H, polypeptide 1 (predicted) (Gtf2h1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51172601-S	ILMN_280346	LOC360228	NM_001003706.1	NM_001003706.1		360228	51172601	NM_001003706.1	LOC360228	NP_001003706.1	ILMN_1373783	0005050113	S	234	ACAGCTTCTACCTGGGGGGAAAAATGGCTGTTGGAGCTCTGTGACCAAGG	10	+	71972289-71972292:71975669-71975714	10q26	Rattus norvegicus WDNM1 homolog (LOC360228), mRNA.					
Rattus norvegicus	RefSeq	GI_27661683-S	ILMN_294506	CCDC153	NM_001013953.1	NM_001013953.1		300663	62078634	NM_001013953.1	Ccdc153	NP_001013975.1	ILMN_2040615	0000830725	S	599	AAAAGGAGCTGGGGACCCGAAGCAAGCGGCTGGAGGAGGAAGTGAGAGGT	8	+	47221267-47221316	8q22	Rattus norvegicus coiled-coil domain containing 153 (Ccdc153), mRNA.				MGC109180	MGC109180
Rattus norvegicus	RefSeq	GI_62649219-S	ILMN_63643	LOC500493	XM_580073.1	XM_580073.1		500493	62649219	XM_580073.1	LOC500493	XP_580073.1	ILMN_1358655	0006450138	S	783	GCCTCTGGATGAATGCTCCAATGCACTGCCATGTCTCCAACCAAGCACGT					PREDICTED: Rattus norvegicus LOC500493 (LOC500493), mRNA.					
Rattus norvegicus	RefSeq	GI_62658856-S	ILMN_276562	KNTC1_PREDICTED	XM_001074897.1	XM_001074897.1		304477	109497188	XM_001074897.1	Kntc1_predicted	XP_001074897.1	ILMN_1373537	0004480114	S	6565	GTGCCAGCAGACACAGCTCCCTCTGAGATCCTGAAGACATTCCTTGGATC				12q15-q16	PREDICTED: Rattus norvegicus kinetochore associated 1 (predicted) (Kntc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646394-S	ILMN_59980	DDX27_PREDICTED	XM_342582.2	XM_342582.2		362274	62646394	XM_342582.2	Ddx27_predicted	XP_342583.2	ILMN_1350702	0002690441	S	2497	GTACAAGCCCACAGGAGACTGAGCCCCAGCCGCTAAACTTTCCTCTCAGC				3q42	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 (predicted) (Ddx27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51889719-A	ILMN_287475	KRT39	NM_001004130.1	NM_001004130.1		303523	51889719	NM_001004130.1	Krt39	NP_001004130.1	ILMN_1376650	0002360092	S	1394	CTTCTCACGAGCATGTGCAGCCTTGCTACATCACCAGACCTGCCAAAGTC	10	-	88460260-88460309	10q32.1	Rattus norvegicus keratin 39 (Krt39), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]	Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62648065-S	ILMN_299331	LOC500300	NM_001024334.2	NM_001024334.2		500300	66793440	NM_001024334.2	LOC500300	NP_001019505.2	ILMN_1366573	0004200072	S	918	GCTCCCACAATGCAGCTTGACTGGTACTGTCTGTTTGTGACTGGCTGGCC	4	+	153002215-153002264	4q42	Rattus norvegicus similar to hypothetical protein MGC6835 (LOC500300), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62647382-S	ILMN_64358	LOC500160	XM_575512.1	XM_575512.1		500160	62647382	XM_575512.1	LOC500160	XP_575512.1	ILMN_1355519	0004050152	S	72	GGATCCAGGAAGCCCGCGGAGATGTTGTGATGACCCAGACACCACCGTCT					PREDICTED: Rattus norvegicus similar to Immunoglobulin light chain (LOC500160), mRNA.					
Rattus norvegicus	RefSeq	GI_47576628-S	ILMN_280908	OLR857	NM_001000583.1	NM_001000583.1		366456	47576628	NM_001000583.1	Olr857	NP_001000583.1	ILMN_1359475	0000540520	S	783	GTACATGAGGCCTGGTTCTTGGTATGACCCAGAGCGGGACAAGAAGCTGG	5	-	139166405-139166454	5q36	Rattus norvegicus olfactory receptor 857 (Olr857), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr857	Olr857
Rattus norvegicus	RefSeq	GI_47577706-S	ILMN_282171	OLR581	NM_001000663.1	NM_001000663.1		404863	47577706	NM_001000663.1	Olr581	NP_001000663.1	ILMN_1365107	0004730072	S	716	CTACCTGTGCTTCTCACCTTACTGCAGTTGGGATTTTACAGGGGACCACA	3	+	71433094-71433143	3q24	Rattus norvegicus olfactory receptor 581 (Olr581), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr581	Olr581
Rattus norvegicus	RefSeq	GI_8393137-S	ILMN_275796	CLCN2	NM_017137.1	NM_017137.1		29232	8393137	NM_017137.1	Clcn2	NP_058833.1	ILMN_1374725	0000730309	S	2863	CCCTCTGATAGTGATGACAAGTGCCAGTGACCCCCATACTGGACGGCCTG	11	+	82440960-82440981:82440982-82441009	11q23	Rattus norvegicus chloride channel 2 (Clcn2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	ClC-2	ClC-2
Rattus norvegicus	RefSeq	GI_62717864-S	ILMN_52619	LOC503296	XM_578832.1	XM_578832.1		503296	62717864	XM_578832.1	LOC503296	XP_578832.1	ILMN_1366879	0004670239	S	433	TACAGCAGCTGCTCTCAATCTCGATGCCAGCATGTGGGCACCAAGCCCAG					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC503296), mRNA.					
Rattus norvegicus	RefSeq	GI_62638260-S	ILMN_282781	PEX7	NM_001034147.1	NM_001034147.1		308718	77628036	NM_001034147.1	Pex7	NP_001029319.1	ILMN_1366929	0002470685	S	660	ACAATGAGAACTTGCTGGTGACAGGTGCGGTAGACTGTAGCCTGAGAGGC	1	-	15137033-15137075:15138230-15138236	1p12	Rattus norvegicus peroxisomal biogenesis factor 7 (Pex7), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence IEA]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol [goid 8611] [evidence ISS]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence IEA]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with a type 2 peroxisome targeting signal, a nonapeptide with a broad consensus sequence of (R/K)-(L/V/I)-(XXXXX)-(H/Q)-(L/A/F) [goid 5053] [evidence ISS]	MGC112795	MGC112795
Rattus norvegicus	RefSeq	GI_62647858-S	ILMN_281512	LRIG1_PREDICTED	XM_001076882.1	XM_001076882.1		312574	109473950	XM_001076882.1	Lrig1_predicted	XP_001076882.1	ILMN_1372023	0001660672	S	3222	CTCTGTACCACTGAAAGGACAGGTCACGGGGAGACGGAGAGGACCATTGC				4q34	PREDICTED: Rattus norvegicus leucine-rich repeats and immunoglobulin-like domains 1 (predicted) (Lrig1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666135-S	ILMN_59934	LOC499459	XM_574783.1	XM_574783.1		499459	62666135	XM_574783.1	LOC499459	XP_574783.1	ILMN_1349619	0005050082	S	412	GCGTACCCCAGCTGACAACCCACTCGAGTAGACCTACGTCAGAACTCCAG					PREDICTED: Rattus norvegicus similar to LRRGT00158 (LOC499459), mRNA.					
Rattus norvegicus	RefSeq	GI_62657361-S	ILMN_273014	SAP30BP_PREDICTED	XM_001081722.1	XM_001081722.1		360662	109492235	XM_001081722.1	Sap30bp_predicted	XP_001081722.1	ILMN_1358021	0002060575	S	1696	CAGGGCTGCCGCTCATTGTTTGTGTGAAGGCGCTGCTCTGGGGAAGGTCT				10q32.3	PREDICTED: Rattus norvegicus SAP30 binding protein (predicted) (Sap30bp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655783-S	ILMN_54292	LOC497665	XM_579701.1	XM_579701.1		497665	62655783	XM_579701.1	LOC497665	XP_579701.1	ILMN_1353209	0000450273	S	2330	CTCTGCTGAGAGAAGTCCTATTGCAGGTGTGACAGTGTTTGGGGCTACCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_173149 (LOC497665), mRNA.					
Rattus norvegicus	RefSeq	GI_62645349-S	ILMN_301105	UBE2L6	NM_001024755.1	NM_001024755.1		295704	67078501	NM_001024755.1	Ube2l6	NP_001019926.1	ILMN_1373472	0001580687	S	1054	TGGGGGGAACTGTGTGGTGGGTACTCCTTCCTGGAGTCATCTGGCTGTAG	3	+	68015974-68016023	3q24	Rattus norvegicus ubiquitin-conjugating enzyme E2L 6 (Ube2l6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent modification of the target protein [goid 19941] [evidence ISS]; The covalent addition to a protein of ISG15, a ubiquitin-like protein [goid 32020] [evidence IEA]; The covalent addition to a protein of ISG15, a ubiquitin-like protein [goid 32020] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence ISS]; Catalysis of the covalent attachment of the ubiquitin-like protein ISG15 to other proteins [goid 42296] [evidence IEA]; Catalysis of the covalent attachment of the ubiquitin-like protein ISG15 to other proteins [goid 42296] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659967-S	ILMN_262716	PPP2R5A_PREDICTED	XM_001066948.1	XM_001066948.1		312754	109499259	XM_001066948.1	Ppp2r5a_predicted	XP_001066948.1	ILMN_1370026	0002320377	S	2480	CTCCTAGAGAGGCGGGTGGGGAGATAAAGGCCCAGCCTCATTAAAGATAC				13q27	PREDICTED: Rattus norvegicus protein phosphatase 2, regulatory subunit B (B56), alpha isoform (predicted) (Ppp2r5a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648329-S	ILMN_63458	RGD1559723_PREDICTED	XM_575721.2	XM_575721.2		500364	109472838	XM_575721.2	RGD1559723_predicted	XP_575721.2	ILMN_1360095	0000840154	S	639	GGTCTTTTATGTGGGTGTTGGGCTGCGCTCCCTGATGGCTTCTGATGGCC	4	+	183575727-183575776	4q44	PREDICTED: Rattus norvegicus similar to Sspn protein (predicted) (RGD1559723_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577246-S	ILMN_292505	OLR387	NM_001000109.1	NM_001000109.1		292324	47577246	NM_001000109.1	Olr387	NP_001000109.1	ILMN_1369395	0004670195	S	840	TGTGATGATTCCAATGTTGAACCCTTTGGTTTACAGTCTGAGGAACAAGG	1|NW_047589.1	+	100956-101005		Rattus norvegicus olfactory receptor 387 (Olr387), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr387; ratchr1_random-2730168-2731106_ORF	Olr387; ratchr1_random-2730168-2731106_ORF
Rattus norvegicus	RefSeq	GI_62647357	ILMN_63202	LOC500151	XM_575503.1	XM_575503.1		500151	62647357	XM_575503.1	LOC500151	XP_575503.1	ILMN_1649864	0004730138	S	2	CATGGCACCATCAGAGCCCAATTCTCCCACCAAAACAAACATGGAATATC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05 (LOC500151), mRNA.					
Rattus norvegicus	RefSeq	GI_11559981-S	ILMN_297628	UNC5B	NM_022207.1	NM_022207.1		60630	11559981	NM_022207.1	Unc5b	NP_071543.1	ILMN_1360026	0001940465	S	2769	GGCCAGTGCCTTGGAGGAGATGGGCAAGAGTGAGATGCTGGTAGCCATGA	20	-	28095265-28095314	20q11	Rattus norvegicus unc-5 homolog B (C. elegans) (Unc5b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A transmembrane receptor activity that responds to the netrin family of ligands and results in chemotaxis when activated [goid 5042] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Unc5h2	Unc5h2
Rattus norvegicus	RefSeq	GI_62655822-I	ILMN_56414	RNPS1_PREDICTED	XM_573055.1	XM_573055.1		287113	62655822	XM_573055.1	Rnps1_predicted	XP_573055.1	ILMN_1376170	0004590524	S	380	GTAGTGAGTGGAGAAAGAGGGTGGGAGGCGAGGTCGATGTATGTGACCGG				10q12	PREDICTED: Rattus norvegicus ribonucleic acid binding protein S1 (predicted) (Rnps1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648123-S	ILMN_53388	DPPA3	XM_216263.4	XM_216263.4		297576	109472600	XM_216263.4	Dppa3	XP_216263.3	ILMN_1349828	0000580400	S	280	AGGGTCCGCACTCTGTTGTCCGTGCTGAAAGACCCCATAGCAAGGATGAG	4	+	159085628-159085677	4q42	PREDICTED: Rattus norvegicus developmental pluripotency-associated 3 (Dppa3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62653923-A	ILMN_280386	FBXO9	NM_001011998.1	NM_001011998.1		300849	58865571	NM_001011998.1	Fbxo9	NP_001011998.1	ILMN_1376770	0000360402	S	1417	TCGCCGTGTTCCTGTCCAAGAGGCAGATCACAACTTTCATGTGGGGCTGC	8	-	83059692-83059741	8q31	Rattus norvegicus f-box protein 9 (Fbxo9), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62718229-S	ILMN_274196	LOC689326	XM_001070403.1	XM_001070403.1		689326	109513328	XM_001070403.1	LOC689326	XP_001070403.1	ILMN_1356510	0006180273	S	598	GGTCTCATAAAGTGCAAGAGAGCTGGAATTGGACACACCCCAGTAAGAGA	Un|NW_047878.1	-	315663-315712		PREDICTED: Rattus norvegicus hypothetical protein LOC689326 (LOC689326), mRNA.					
Rattus norvegicus	RefSeq	GI_62666908-S	ILMN_55594	MAGEB18_PREDICTED	XM_228594.4	XM_228594.4		317270	109510815	XM_228594.4	Mageb18_predicted	XP_228594.4	ILMN_1358099	0005910092	S	1046	GCAGCCAGGGCTCGCACTGCTACAACGGCCAGTTCATATTCAAGAGCCAT	X	-	79445551-79445600	Xq22	PREDICTED: Rattus norvegicus melanoma antigen family B, 18 (predicted) (Mageb18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662333-S	ILMN_62973	LOC502059	XM_577492.1	XM_577492.1		502059	62662333	XM_577492.1	LOC502059	XP_577492.1	ILMN_1356930	0006040092	S	55	ACAGGGGCGATGATGGTGTCTGGCGGCACAGGCTTCAGTACGCATACTTC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502059), mRNA.					
Rattus norvegicus	RefSeq	GI_62647878-S	ILMN_64805	RYBP_PREDICTED	XM_232220.4	XM_232220.4		312603	109472439	XM_232220.4	Rybp_predicted	XP_232220.3	ILMN_1361370	0002650129	S	4495	CCATTTGCCCAGAAAGATGGCTTGTATAACGCTTTGGAAGTTTCTGCTCC	4	-	135101883-135101932	4q34	PREDICTED: Rattus norvegicus RING1 and YY1 binding protein (predicted) (Rybp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662609-S	ILMN_64922	LOC502077	XM_577511.1	XM_577511.1		502077	62662609	XM_577511.1	LOC502077	XP_577511.1	ILMN_1374297	0004850102	S	478	GTCCATGCCCCTCAGAAGACTACAAGGCTGTGGGTAAGGTCATCCCAGAA				16p13	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC502077), mRNA.					
Rattus norvegicus	RefSeq	GI_47577896	ILMN_281226	OLR1158	NM_001000872.1	NM_001000872.1		405169	47577896	NM_001000872.1	Olr1158	NP_001000872.1	ILMN_1649823	0003710164	S	746	CATTGTTCTATGGCACAGGCCTTGGGGTCTACCTCACTTCTCGAACATCC	8	-	18095428-18095477	8q13	Rattus norvegicus olfactory receptor 1158 (Olr1158), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1158	Olr1158
Rattus norvegicus	RefSeq	GI_47577256-S	ILMN_291550	OLR727	NM_001000619.1	NM_001000619.1		404811	47577256	NM_001000619.1	Olr727	NP_001000619.1	ILMN_1358438	0005550091	S	423	CTTCTTGGTGGTAGCAGCTGGAATTGTGGGGTTTGTTCATGGAATGATAC	3	+	74421717-74421766	3q24	Rattus norvegicus olfactory receptor 727 (Olr727), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr727	Olr727
Rattus norvegicus	RefSeq	GI_62653721-S	ILMN_265391	SH3PX3_PREDICTED	XM_001073948.1	XM_001073948.1		315696	109484766	XM_001073948.1	Sh3px3_predicted	XP_001073948.1	ILMN_1351211	0001990037	S	2490	CAGGCCGAGATGAACCATTTCCACCAGCGCCGTGAGCTCGACTTCAAGCA				8q24	PREDICTED: Rattus norvegicus SH3 and PX domain containing 3 (predicted) (Sh3px3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981139-S	ILMN_290000	LALBA	NM_012594.1	NM_012594.1		24528	6981139	NM_012594.1	Lalba	NP_036726.1	ILMN_1368248	0003290154	S	341	TCGTGGCTATCAAAGGGATCGACTACTGGAAGGCTCACAAGCCCATGTGC	7	-	137221005-137221027:137222030-137222056	7q36	Rattus norvegicus lactalbumin, alpha (Lalba), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the formation of lactose, the disaccharide galactopyranosyl-glucose [goid 5989] [evidence IEA]	Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose [goid 4461] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644737-S	ILMN_293712	FBXW5	NM_001025730.1	NM_001025730.1		362081	71043657	NM_001025730.1	Fbxw5	NP_001020901.1	ILMN_1361629	0000940520	S	1175	CAGCAGGAACAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCAC	3	+	3676262-3676311	3p13	Rattus norvegicus F-box and WD repeat domain containing 5 (Fbxw5), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116348	MGC116348
Rattus norvegicus	RefSeq	GI_62651173-S	ILMN_262511	BTBD7_PREDICTED	XM_001067530.1	XM_001067530.1		362772	109479844	XM_001067530.1	Btbd7_predicted	XP_001067530.1	ILMN_1372651	0002230438	S	2662	GGACGATTCCATTAGCAGAGGGAGGAGGTCGCCAAGTAAACCAGACTTCC				6q32	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 7 (predicted), transcript variant 1 (Btbd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641057-S	ILMN_67560	TRIM21_PREDICTED	XM_219011.4	XM_219011.4		308901	109459153	XM_219011.4	Trim21_predicted	XP_219011.3	ILMN_1361987	0001450184	S	1328	TCGGACCTCTGCGACCCTTCTTTAGTGTCGGTTTCAATGATGATGGGGGG	1	-	160175920-160175969	1q32	PREDICTED: Rattus norvegicus tripartite motif protein 21 (predicted) (Trim21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28212243-S	ILMN_278973	TAAR7H	NM_175587.1	NM_175587.1		294130	28212243	NM_175587.1	Taar7h	NP_783177.1	ILMN_1352393	0004920333	S	594	CCTCAGCTGTGTGGGTGGATGTCAAATCCCAATGAATCAAAGCTGTGTCC	1	-	21898964-21899013	1p12	Rattus norvegicus trace-amine-associated receptor 7h (Taar7h), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta6	Ta6
Rattus norvegicus	RefSeq	GI_8392857-S	ILMN_272744	ADH4	NM_017270.1	NM_017270.1		29646	8392857	NM_017270.1	Adh4	NP_058966.1	ILMN_1354213	0002510603	S	908	TTGAAAGCAGCTGTAGACTGCACCGTCGTAGGCTGGGGGTCGTGCACTGT	2	+	235959898-235959898:235967917-235967965	2q44	Rattus norvegicus alcohol dehydrogenase 4 (class II), pi polypeptide (Adh4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation [goid 6067] [evidence ISS];  [goid 6069] [evidence IDA];  [goid 6069] [evidence ISS]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence ISS]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence ISS]; The chemical reactions and pathways involving quinone cofactors [goid 42375] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom [goid 46164] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADPH + H+ + quinone = NADP+ + semiquinone [goid 3960] [evidence ISS]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence ISS]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence IDA]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence IEA]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ requiring the presence of zinc [goid 4024] [evidence ISS]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ requiring the presence of zinc [goid 4024] [evidence ISS]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence ISS]; Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A [goid 5503] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+ [goid 19115] [evidence ISS]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence ISS]; Interacting selectively with ethanol, CH(3)-CH(2)-OH [goid 35276] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ac1002; ADH-1	Ac1002; ADH-1
Rattus norvegicus	RefSeq	GI_62078652-S	ILMN_288044	LOC302845	NM_001013962.1	NM_001013962.1		302845	62078652	NM_001013962.1	LOC302845	NP_001013984.1	ILMN_1369670	0001230102	S	1160	GGGTTCTGGGGAGAAGCCCAGCAGTGTCTCCCACCCTGAGTAAATTAGGC	X	+	144120312-144120354:144120355-144120361	Xq36	Rattus norvegicus similar to mage-k1 (LOC302845), mRNA.					
Rattus norvegicus	RefSeq	GI_31542149-S	ILMN_281214	ASGR2	NM_017189.2	NM_017189.2		29403	31542149	NM_017189.2	Asgr2	NP_058885.1	ILMN_1368855	0004010095	S	1219	GAGAGACAGAGTCCCAGGCATGAGGGGGGTTATGGGAGAATGGAAAGGGG	10	+	56955580-56955629	10q24	Rattus norvegicus asialoglycoprotein receptor 2 (Asgr2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence ISS]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of lipid within an organism or cell [goid 55088] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	MGC108546	MGC108546
Rattus norvegicus	RefSeq	GI_62646116-S	ILMN_69066	LOC499928	XM_575272.1	XM_575272.1		499928	62646116	XM_575272.1	LOC499928	XP_575272.1	ILMN_1357182	0006980070	S	84	TCAGCTGGCTGTGACCTCGGCTCAGGTTCTGTCCTTCCTCAGGGGCTCTT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC499928), mRNA.					
Rattus norvegicus	RefSeq	GI_16758543-S	ILMN_295814	TDG	NM_053729.1	NM_053729.1		114521	16758543	NM_053729.1	Tdg	NP_446181.1	ILMN_1356046	0004730433	S	2746	GGGTGCGTGGACCCTCTGAGTACTGTCCTGGTGCTTTTCCTTGAACATGG	7	-	23300524-23300573	7q13	Rattus norvegicus thymine-DNA glycosylase (Tdg), mRNA.		Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IDA]; A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence IEA]	Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine [goid 4844] [evidence IDA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with double-stranded DNA containing one or more mismatches [goid 30983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576768-S	ILMN_298451	OLR834	NM_001000407.1	NM_001000407.1		298396	47576768	NM_001000407.1	Olr834	NP_001000407.1	ILMN_1368101	0006650605	S	890	TAAAGGAGGCTGCCAGGAAAGCTTGGGGCAGCAGATGGGTCTGTAGGTGA				5q22	Rattus norvegicus olfactory receptor 834 (Olr834), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr834	Olr834
Rattus norvegicus	RefSeq	GI_19173771-S	ILMN_161712	ILK	NM_133409.2	NM_133409.2		170922	40254734	NM_133409.2	Ilk	NP_596900.1	ILMN_2040391	0004850189	S	1111	ATGTATGCACCTGCCTGGGTGGCCCCTGAAGCCCTGCAAAAGAAGCCTGA	1	+	163486689-163486719:163486832-163486850	1q33	Rattus norvegicus integrin linked kinase (Ilk), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254734-S	ILMN_161712	ILK	NM_133409.2	NM_133409.2		170922	40254734	NM_133409.2	Ilk	NP_596900.1	ILMN_2039085	0004850754	S	1595	GGGCTCAGAGCTTTGTCACTTGCCACTTGATGTCTCCCAACATGGGAGGG	1	+	163487459-163487508	1q33	Rattus norvegicus integrin linked kinase (Ilk), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19173771-S	ILMN_161712	ILK	NM_133409.2	NM_133409.2		170922	40254734	NM_133409.2	Ilk	NP_596900.1	ILMN_2040414	0003890064	S	1255	ATGGAGATTGGAATGAAGGTGGCACTGGAAGGCCTTCGGCCTACTATCCC	1	+	163486945-163486962:163487137-163487168	1q33	Rattus norvegicus integrin linked kinase (Ilk), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654065-S	ILMN_290895	RGD1307365	XM_001063109.1	XM_001063109.1		300880	109485064	XM_001063109.1	RGD1307365	XP_001063109.1	ILMN_1361642	0006200576	S	4443	GTTAGACTCCATACTCGACGTTCTTCGGGAGCTGCACAGACAGGGGGTCG				8q31	PREDICTED: Rattus norvegicus similar to KIAA1009 protein (RGD1307365), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577526-S	ILMN_280570	OLR4	NM_001000111.1	NM_001000111.1		292560	47577526	NM_001000111.1	Olr4	NP_001000111.1	ILMN_1362388	0004540168	S	890	GGAATAAGGAGGTCCACACTGTGCTAAAGAAGACCTTCCATTGGCCTTGA	1	+	65764275-65764324	1q12	Rattus norvegicus olfactory receptor 4 (Olr4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-65841497-65842435_ORF; Olr4	ratchr1-65841497-65842435_ORF; Olr4
Rattus norvegicus	RefSeq	GI_62543498-S	ILMN_272329	VGLL4	NM_001015004.1	NM_001015004.1		297523	62543498	NM_001015004.1	Vgll4	NP_001015004.1	ILMN_1360362	0002690113	S	1089	CTTCAGATCAAAGCGGCCAAGGACAGCGCATCCAGCAGCCCAGAGTCAGC	4	-	150995717-150995766	4q42	Rattus norvegicus vestigial like 4 (Drosophila) (Vgll4), mRNA.				MGC109514	MGC109514
Rattus norvegicus	RefSeq	GI_62649029-S	ILMN_265151	LOC362526	NM_001025021.1	NM_001025021.1		362526	68163480	NM_001025021.1	LOC362526	NP_001020192.1	ILMN_1357472	0004210288	S	907	ACGCAAGTCCATGAAGATGTCCCAGTCTCAGTTCGACAGCCTGGAGGACC	5	+	77069936-77069985	5q24	Rattus norvegicus hypothetical protein LOC362526 (LOC362526), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]	MGC109221	MGC109221
Rattus norvegicus	RefSeq	GI_62664544-S	ILMN_63584	LOC498877	XM_579879.1	XM_579879.1		498877	62664544	XM_579879.1	LOC498877	XP_579879.1	ILMN_1366829	0002510102	S	484	ACCTTCCAGTAGCAAGTGCCTCCACACCGACCAGTGCAGATGGGGTCTCA					PREDICTED: Rattus norvegicus LOC498877 (LOC498877), mRNA.					
Rattus norvegicus	RefSeq	GI_33636729-S	ILMN_62381	TNFAIP1	NM_182950.3	NM_182950.3		287543	77627744	NM_182950.3	Tnfaip1	NP_891995.1	ILMN_1355883	0001980671	S	1814	GGGAAAGGCTAGGACTAAGCATGTTACCTCTGCAGGATGCTAGGACCCCA	10	-	64634071-64634120	10q25	Rattus norvegicus tumor necrosis factor, alpha-induced protein 1 (endothelial) (Tnfaip1), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA replication [goid 6275] [evidence IMP]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence TAS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence TAS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence TAS]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	Edp1	Edp1
Rattus norvegicus	RefSeq	GI_34877919-S	ILMN_161851	RGD1561656_PREDICTED	XM_344647.2	XM_344647.2		364810	62664062	XM_344647.2	RGD1561656_predicted	XP_344648.2	ILMN_2039992	0006220136	S	405	GATGGAGGAGGGTCTCATGGGCCTCTTTGTGATGGAGGAGGGTCTCATGA	18	-	2317403-2317452	18p13	PREDICTED: Rattus norvegicus similar to putative mitochondrial protein (2B324) (predicted) (RGD1561656_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664062	ILMN_161851	RGD1561656_PREDICTED	XM_344647.2	XM_344647.2		364810	62664062	XM_344647.2	RGD1561656_predicted	XP_344648.2	ILMN_1650245	0004570095	S	1705	GGTCTCATGGGCCTCTCTGTGATGGAGGAGGGTCTCATGGGCCTCTTTGT	18	-	2316103-2316152	18p13	PREDICTED: Rattus norvegicus similar to putative mitochondrial protein (2B324) (predicted) (RGD1561656_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642271-S	ILMN_56471	LOC309475	XM_220013.3	XM_220013.3		309475	62642271	XM_220013.3	LOC309475	XP_220013.2	ILMN_1361015	0005570735	S	6173	ACCTACAACCTCCATGGGCAGTCAGCAGGTGGGAAGACATGGTGTTCGCC				1q54	PREDICTED: Rattus norvegicus similar to transmembrane protein TM9SF3 (LOC309475), mRNA.					
Rattus norvegicus	RefSeq	GI_62653069-S	ILMN_55465	ATF1	XM_235657.4	XM_235657.4		315305	109481315	XM_235657.4	Atf1	XP_235657.3	ILMN_1356841	0002260546	S	854	CCTACCAGATCCGTACCACACCATCTGCCACGTCACTTCCACAGACCATG	7	+	139007065-139007114	7q36	PREDICTED: Rattus norvegicus activating transcription factor 1 (Atf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659458	ILMN_48974	RGD1307830_PREDICTED	XM_222746.4	XM_222746.4		304863	109498002	XM_222746.4	RGD1307830_predicted	XP_222746.4	ILMN_1650515	0002630577	S	1559	GAAGCCGGCACCGAGCTCTGCCTCGATCAGGTCGTCTGTTAGATGATGTG	13	-	64660723-64660772	13q21	PREDICTED: Rattus norvegicus similar to cDNA sequence BC003331 (predicted) (RGD1307830_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557315-S	ILMN_269242	ST3GAL1	NM_001013219.1	NM_001013219.1		362924	61557315	NM_001013219.1	St3gal1	NP_001013237.1	ILMN_1356703	0001090609	S	914	CATCAGCAGGTGCATTCCGAAAGACGGGGGTTCATGATGGCGACTTCGAG	7	-	104467737-104467786	7q33	Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (St3gal1), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,3-N-acetyl-alpha-D-galactosaminyl-R = CMP + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,3-N-acetyl-alpha-D-galactosaminyl-R [goid 3836] [evidence IEA]	Siat4a	Siat4a
Rattus norvegicus	RefSeq	GI_51592089-S	ILMN_53895	CCR5	NM_053960.3	NM_053960.3		117029	82617607	NM_053960.3	Ccr5	NP_446412.2	ILMN_1362741	0003840164	S	2327	CCGTACCAGCTTTGATCCTGAAGGGTCACCAGGGGGCTGTGAAATACCTG	8	+	128912119-128912168	8q32	Rattus norvegicus chemokine (C-C motif) receptor 5 (Ccr5), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	An inflammatory response to an antigenic stimulus, which can be include any number of T cell or B cell epitopes [goid 2437] [evidence IEP]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; Any process that modulates the rate or extent of fever [goid 31620] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IMP]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEP]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IMP]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence TAS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]; Interacting selectively with a C-C chemokine; C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 19957] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]	Cmkbr5; Ckr5	Cmkbr5; Ckr5
Rattus norvegicus	RefSeq	GI_62643051-S	ILMN_298077	LOC499544	XM_574867.1	XM_574867.1		499544	62643051	XM_574867.1	LOC499544	XP_574867.1	ILMN_1364326	0002760440	S	451	CTGCGCATGTGCTGTGGAAGAGAGGACCCTATTAGAGCTGCTTCCATGCC	2	+	61414054-61414103	2q16	PREDICTED: Rattus norvegicus LRRGT00154 (LOC499544), mRNA.					
Rattus norvegicus	Unigene	Rn.57310	ILMN_161200	RN.57310	Rn.57310		Rn.57310		14960821	BI296417			ILMN_1530173	0002760136	S	412	TTGGTGGTTTTGGCTTTATATTTCGTCTCTGTAGTCACTGTTTTTAGATA					UI-R-CV2-cgq-h-09-0-UI.s1 UI-R-CV2 Rattus norvegicus cDNA clone UI-R-CV2-cgq-h-09-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_11067382-S	ILMN_296581	DNASE2B	NM_021664.1	NM_021664.1		59296	11067382	NM_021664.1	Dnase2b	NP_067696.1	ILMN_1373119	0004230463	S	1091	GGCTCGCTGGACCTGTATTGGAGACCTAAATCGGAGCCCACATCAAGCCT	2	-	244779946-244779995	2q44	Rattus norvegicus deoxyribonuclease II beta (Dnase2b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides [goid 6259] [evidence IEA]	Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks [goid 4520] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks [goid 4520] [evidence IEA]; Catalysis of the endonucleolytic cleavage of DNA to 3'-phosphodinucleotide and 3'-phosphooligonucleotide end products [goid 4531] [evidence IDA]; Catalysis of the endonucleolytic cleavage of DNA to 3'-phosphodinucleotide and 3'-phosphooligonucleotide end products [goid 4531] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	UOX; Dlad	UOX; Dlad
Rattus norvegicus	RefSeq	GI_62660424-S	ILMN_69884	LOC364149	XM_573589.1	XM_573589.1		364149	62660424	XM_573589.1	LOC364149	XP_573589.1	ILMN_1374649	0002680593	S	390	CTGAGATCAGGAGTCAAGATGGCTGGTGTGGAGCCTTCTGTTATGGGAGT				14p11	PREDICTED: Rattus norvegicus similar to Ab2-076 (LOC364149), mRNA.					
Rattus norvegicus	RefSeq	GI_17985948-S	ILMN_290417	HBB	NM_033234.1	NM_033234.1		24440	17985948	NM_033234.1	Hbb	NP_150237.1	ILMN_1353696	0002510524	S	110	TGATGATGTTGGTGGCGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTT	1	-	161619925-161619945:161620055-161620083	1q32	Rattus norvegicus hemoglobin beta chain complex (Hbb), mRNA.	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IDA]; An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IDA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 30492] [evidence ISS]; Interacting selectively with a hemoglobin alpha chain [goid 31721] [evidence IDA]; Interacting selectively with a hemoglobin beta chain [goid 31722] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660904-S	ILMN_61637	LOC501928	XM_577353.1	XM_577353.1		501928	62660904	XM_577353.1	LOC501928	XP_577353.1	ILMN_1364266	0004570711	S	390	GCTAAGAGGAAGACAGCCCCAGTGGACAAAGTAAATGGCCAGAGTGGGGC					PREDICTED: Rattus norvegicus similar to Upp1 protein (LOC501928), mRNA.					
Rattus norvegicus	RefSeq	GI_62646832-S	ILMN_288739	RGD1559912_PREDICTED	XR_007309.1	XR_007309.1		500016	109473090	XR_007309.1	RGD1559912_predicted		ILMN_1360343	0000730138	S	1904	TCCCTGGAAGAGGGAAGTTGTCGGAGTTGGGAGGGGACGCTTTTGTTTGC				4q13	PREDICTED: Rattus norvegicus similar to cytoskeleton associated protein 2 (predicted) (RGD1559912_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577872-S	ILMN_302876	OLR1177	NM_001000865.1	NM_001000865.1		405160	47577872	NM_001000865.1	Olr1177	NP_001000865.1	ILMN_1369076	0006550047	S	450	GTCTTTTCCAGTCAGTGTTTTTGAGTCACAGCTGCACAACTTGATTGCCA	8	-	18791264-18791313	8q13	Rattus norvegicus olfactory receptor 1177 (Olr1177), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1177	Olr1177
Rattus norvegicus	RefSeq	GI_34868295-S	ILMN_277368	LOC687298	XM_001077884.1	XM_001077884.1		687298	109489640	XM_001077884.1	LOC687298	XP_001077884.1	ILMN_1365861	0006370600	S	391	GCCGCAAGCTAACACCTCAGGGACAGAGAGATCGGGACAGAATCGCTGGA					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (LOC687298), mRNA.					
Rattus norvegicus	RefSeq	GI_11968073-S	ILMN_291754	LOC364105	XR_008399.1	XR_008399.1		364105	109500314	XR_008399.1	LOC364105		ILMN_1360804	0002450053	S	260	GCGGCGGCCAAGAAGGATTGATGACCCCTCCCCCAATAAAAGATGGTTCT				14p22	PREDICTED: Rattus norvegicus hypothetical LOC364105 (LOC364105), mRNA.					
Rattus norvegicus	RefSeq	GI_13928865-S	ILMN_292849	PSMB4	NM_031629.1	NM_031629.1		58854	13928865	NM_031629.1	Psmb4	NP_113817.1	ILMN_1371481	0001690615	S	540	AGCCCCTTCACTAGCCACTGGTTATGGTGCATACTTGGCTCAGCCTCTGC	2	-	189779733-189779782	2q34	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 4 (Psmb4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34854531-S	ILMN_56466	HKR2_PREDICTED	XM_218295.2	XM_218295.2		308364	34854531	XM_218295.2	Hkr2_predicted	XP_218295.2	ILMN_1372741	0005890546	S	1434	GCTCTCATGATGCACCTAAAGCTCCACATCACCGTGTCTCGAAGCACCCC					PREDICTED: Rattus norvegicus GLI-Kruppel family member HKR2 (predicted) (Hkr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664428-S	ILMN_264027	ZFP608_PREDICTED	XM_001056026.1	XM_001056026.1		307296	109507326	XM_001056026.1	Zfp608_predicted	XP_001056026.1	ILMN_1368285	0005290433	S	4724	CCTACTCCAACATCACGCCAACCAATACCGAAGCAAGTCCCCTGCTCCTG				18q11	PREDICTED: Rattus norvegicus zinc finger protein 608 (predicted) (Zfp608_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659354-S	ILMN_275754	RGD1565940_PREDICTED	XM_001062708.1	XM_001062708.1		498234	109498667	XM_001062708.1	RGD1565940_predicted	XP_001062708.1	ILMN_1349052	0003710500	S	1337	CTTGATAGGGCCACCAGGTACAACCAGGTCTAAGTGGGAGGACCAGGGTC				13q13	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor-like 10B (predicted) (RGD1565940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650623-S	ILMN_68986	AGR2_PREDICTED	XM_216691.4	XM_216691.4		298961	109478145	XM_216691.4	Agr2_predicted	XP_216691.1	ILMN_1352638	0001340215	S	499	CTCAAACCGTCTCTACGCTTACGAACCTTCTGACACAGCTCTGCTGCACG	6	+	54714588-54714631:54716632-54716637	6q16	PREDICTED: Rattus norvegicus anterior gradient 2 (Xenopus laevis) (predicted) (Agr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164152-S	ILMN_284076	RGD1309906	NM_001009246.1	NM_001009246.1		287406	57164152	NM_001009246.1	RGD1309906	NP_001009246.1	ILMN_1363655	0004570133	S	966	GGTGTGCTTCCTTGCGGGTCATACACATGATGGTGGCTACTCTGAGGATC	10	-	53739008-53739057	10q24	Rattus norvegicus similar to RIKEN cDNA 2310004I24 gene (RGD1309906), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC108803; MDS006	MGC108803; MDS006
Rattus norvegicus	RefSeq	GI_62643009-S	ILMN_49830	LOC365689	XM_577991.1	XM_577991.1		365689	62643009	XM_577991.1	LOC365689	XP_577991.1	ILMN_1371782	0001660497	S	1290	CGACACATCTGCGAGTCGCGCTTAGATCCAGATGACAAAGTGACGCTGGG				2q16	PREDICTED: Rattus norvegicus similar to ribosomal protein L4 (LOC365689), mRNA.					
Rattus norvegicus	RefSeq	GI_62661976	ILMN_291660	LOC692000	XM_001080821.1	XM_001080821.1		692000	109501870	XM_001080821.1	LOC692000	XP_001080821.1	ILMN_1651012	0001240471	S	31	ATGACGAAGTTAACACAGTGGCTTTGGGGACTGGCTCTCCTGGGCTCTGC	15	-	51541900-51541949	15p11	PREDICTED: Rattus norvegicus similar to Dolichol-phosphate mannosyltransferase subunit 3 (Dolichol-phosphate mannose synthase subunit 3) (Dolichyl-phosphate beta-D-mannosyltransferase subunit 3) (Mannose-P-dolichol synthase subunit 3) (MPD synthase subunit 3) (DPM synthase com... (LOC692000), mRNA.					
Rattus norvegicus	RefSeq	GI_62717720-S	ILMN_67234	LOC503279	XM_578814.1	XM_578814.1		503279	62717720	XM_578814.1	LOC503279	XP_578814.1	ILMN_1361734	0000130427	S	875	CCGCCAGGCAGGACACCATCCTACAATCCACATCTACACTGGTTTACCGC					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503279), mRNA.					
Rattus norvegicus	RefSeq	GI_62718530-S	ILMN_66593	LOC501416	XM_576827.1	XM_576827.1		501416	62718530	XM_576827.1	LOC501416	XP_576827.1	ILMN_1366222	0000460019	S	1875	CGTTCCTGGGACGCTGGATGTGAAATGCCGCACACAACACTCGGGAACCA					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501416), mRNA.					
Rattus norvegicus	RefSeq	GI_62665331-S	ILMN_278070	RGD1308481_PREDICTED	XM_001078486.1	XM_001078486.1		307897	109508966	XM_001078486.1	RGD1308481_predicted	XP_001078486.1	ILMN_1357376	0007100592	S	1030	CTAGGCTATGCACCTCAGCCGTTTGACCTGCAGGAGGTGGTCGAGTGGTT				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632417N05 (predicted) (RGD1308481_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850658-A	ILMN_296163	ARHGEF6	NM_001005565.1	NM_001005565.1		363509	53850658	NM_001005565.1	Arhgef6	NP_001005565.1	ILMN_1376939	0003390040	S	1775	GTTGCCTACGACCTGCACCTCCACTTAGACCATCAGCAGCACTAGGTTAT	X	-	141955690-141955739	Xq36	Rattus norvegicus Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 (Arhgef6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639694-S	ILMN_273721	RRAS_PREDICTED	XM_001080661.1	XM_001080661.1		361568	109461901	XM_001080661.1	Rras_predicted	XP_001080661.1	ILMN_1360518	0003290427	S	717	TGTGTCCTGCTGTAGCCTCAAGTGACCAGCACAAGCTCTCGGGACCAGCT				1q22	PREDICTED: Rattus norvegicus Harvey rat sarcoma oncogene, subgroup R (predicted) (Rras_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639406-S	ILMN_53546	RGD1560122_PREDICTED	XM_218509.4	XM_218509.4		292809	109458576	XM_218509.4	RGD1560122_predicted	XP_218509.4	ILMN_1353708	0002320463	S	1484	CCACGCTGTTTACCATACAGGAGGCACATACCAACGCCATCTCAGACTGC	1	-	87766812-87766840:87771452-87771472	1q21	PREDICTED: Rattus norvegicus RGD1560122 (predicted) (RGD1560122_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666728-S	ILMN_270872	RGD1565822_PREDICTED	XR_008356.1	XR_008356.1		367768	109511654	XR_008356.1	RGD1565822_predicted		ILMN_1362615	0004200131	S	110	CTGGGAAAGGCCCAGCAGCTGATCTGCTACACCAAGCCATGCATGCTGCT				Xq14	PREDICTED: Rattus norvegicus similar to Bcl-w (predicted) (RGD1565822_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621101-S	ILMN_292256	HTR7	NM_022938.1	NM_022938.1		65032	12621101	NM_022938.1	Htr7	NP_075227.1	ILMN_1367458	0004920215	S	2651	GTCTGGGTGAAGGAGATGGAAAGCCACAGTTCAGAAGAGTACCCGTGTCT	1	-	240135071-240135120	1q53	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 7 (Htr7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide [goid 7187] [evidence TAS]; The series of molecular signals generated as a consequence of a serotonin receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7192] [evidence IDA]; The series of molecular signals generated as a consequence of a serotonin receptor binding to one of its physiological ligands [goid 7210] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]	5Ht7	5Ht7
Rattus norvegicus	RefSeq	GI_62650587-S	ILMN_67154	LOC362726	XM_343048.2	XM_343048.2		362726	62650587	XM_343048.2	LOC362726	XP_343049.2	ILMN_1358481	0004070411	S	1139	CCTGGAAGAGGAGACCCCAGCAGAGAGCCCTGAATTGTGGACAAGCTTCC					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33190 (predicted) (LOC362726), mRNA.					
Rattus norvegicus	RefSeq	GI_41054869-S	ILMN_291403	ZBTB25	NM_199496.1	NM_199496.1		314245	41054869	NM_199496.1	Zbtb25	NP_955790.1	ILMN_1351004	0004070167	S	2188	CGGGTCTGTGTGAGCTAACCTCGGCTAACCTCGGTAGGAGTAGGCAGATC	6	-	98947877-98947926	6q24	Rattus norvegicus zinc finger and BTB domain containing 25 (Zbtb25), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zfp50; Znf46; KUP	Zfp50; Znf46; KUP
Rattus norvegicus	RefSeq	GI_27465536-S	ILMN_286288	CLCNKB	NM_173103.1	NM_173103.1		79430	27465536	NM_173103.1	Clcnkb	NP_775126.1	ILMN_1355888	0002230300	S	2218	TGCGTTCTGTCACATCGGGACCCTTGGTCCTTCTAGGGTTGTCTGCTGCT	5	-	160294331-160294380	5q36	Rattus norvegicus chloride channel Kb (Clcnkb), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence NAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	Clcnk1l; ClC-K2L; Clck2	Clcnk1l; ClC-K2L; Clck2
Rattus norvegicus	RefSeq	GI_62638497-S	ILMN_52431	RGS17_PREDICTED	XM_217837.4	XM_217837.4		308118	109457716	XM_217837.4	Rgs17_predicted	XP_217837.4	ILMN_1373753	0006860347	S	555	GCGAGGAGAACCTACTCTTCTGGCTGGCCTGTGAAGACTTAAAGAAGGAG	1	-	36542636-36542685	1p11	PREDICTED: Rattus norvegicus regulator of G-protein signaling 17 (predicted) (Rgs17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718532-S	ILMN_274986	LOC681336	XM_001061313.1	XM_001061313.1		681336	109513730	XM_001061313.1	LOC681336	XP_001061313.1	ILMN_1374744	0006200204	S	595	CCAGCAACATCCGGACCCAGCATCATCTGGTCTCAGAAAGTGCAAGAGAG	Un|NW_047911.1	-	30693-30714:31430-31457		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC681336), mRNA.					
Rattus norvegicus	RefSeq	GI_62654866-S	ILMN_56221	CYP39A1_PREDICTED	XM_236983.3	XM_236983.3		301264	62654866	XM_236983.3	Cyp39a1_predicted	XP_236983.3	ILMN_1353886	0000870736	S	1344	CAGGGAAACCCAGGAGGACGCAGTTTGCTTGTTTGGTCAGTGCTGGCGTG				9q12	PREDICTED: Rattus norvegicus cytochrome P450, family 39, subfamily a, polypeptide 1 (predicted) (Cyp39a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705492-S	ILMN_265771	ELOVL5	NM_134382.1	NM_134382.1		171400	19705492	NM_134382.1	Elovl5	NP_599209.1	ILMN_1349146	0006220278	S	777	CTCTCGGAGGAAAGAGCACCTGAAGGGCCACCAGAACGGGTCTATGACTG	8	+	82948225-82948274	8q31	Rattus norvegicus ELOVL family member 5, elongation of long chain fatty acids (yeast) (Elovl5), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]		rELO1	rELO1
Rattus norvegicus	RefSeq	GI_62642278-S	ILMN_56834	LOC365442	XM_345016.2	XM_345016.2		365442	62642278	XM_345016.2	LOC365442	XP_345017.2	ILMN_1361054	0000130121	S	308	GGGAGTCCTGTGGAAGAGGGCATCGGAAGAGCTTTACCTAACTAGCCCAG					PREDICTED: Rattus norvegicus similar to dynein, cytoplasmic, light peptide (LOC365442), mRNA.					
Rattus norvegicus	RefSeq	GI_16758067-S	ILMN_266616	SOX11	NM_053349.1	NM_053349.1		84046	16758067	NM_053349.1	Sox11	NP_445801.1	ILMN_1359646	0003440082	S	1876	CCCCGCTCCGGAAGGCGCTGTTTGAAGCTCGTGGCTCTTTGAAGTCTGAA	6	-	45141462-45141511	6q16	Rattus norvegicus SRY (sex determining region Y)-box 11 (Sox11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEP]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62641460-S	ILMN_64345	LOC502367	XM_577839.1	XM_577839.1		502367	62641460	XM_577839.1	LOC502367	XP_577839.1	ILMN_1368218	0000870167	S	4	TCCTGCAAATTCCTGGAAAACCGGCAGAGCGACTTGGTGCGCCGCCTGCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110025L05 (LOC502367), mRNA.					
Rattus norvegicus	RefSeq	GI_62653426-A	ILMN_270658	SCN4B	NM_001008880.1	NM_001008880.1		315611	57114337	NM_001008880.1	Scn4b	NP_001008880.1	ILMN_1376405	0002510022	S	4122	TGTCCCCAGGAGGCACCGACAGGCACATGCCCAGCACTTGTGTTTAAGCA	8	+	48106585-48106634	8q22	Rattus norvegicus sodium channel, type IV, beta (Scn4b), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence ISS]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence ISS]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758117-S	ILMN_287185	SIP1	NM_053389.1	NM_053389.1		84404	16758117	NM_053389.1	Sip1	NP_445841.1	ILMN_1352790	0002650722	S	896	TTACCTCCTGGGGATGGAAGAGAGTTCTGTGAAGGGAGCCTAAGTCTGAG	6	+	79721608-79721657	6q23	Rattus norvegicus survival of motor neuron protein interacting protein 1 (Sip1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence IEA]; The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112609	MGC112609
Rattus norvegicus	RefSeq	GI_62655766-S	ILMN_288143	RGD1309385_PREDICTED	XM_001056224.1	XM_001056224.1		360488	109490271	XM_001056224.1	RGD1309385_predicted	XP_001056224.1	ILMN_1370925	0003840452	S	380	ATTGAAGCAACTCCCCCGGAGCCTGAACAGAAGCGCAGCAAGCCGAACCT				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E030034P13 (predicted) (RGD1309385_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641257-S	ILMN_274541	RGD1560936_PREDICTED	XM_001079730.1	XM_001079730.1		293472	109462845	XM_001079730.1	RGD1560936_predicted	XP_001079730.1	ILMN_1365309	0002640603	S	334	GACCCAAGGAGGCGAAACAAATCCAACGTGCAGCGCCTGAAGGAGTACCG				1q36	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L13 (predicted) (RGD1560936_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17865330-S	ILMN_270828	FGFR3	NM_053429.1	NM_053429.1		84489	17865330	NM_053429.1	Fgfr3	NP_445881.1	ILMN_1370736	0004670102	S	3095	ACAGGCAGGCCGAGAAGCAGGGGCCTTGTCTGGCATTGCAGTGTTGTTTG	14	-	82683233-82683282	14q21	Rattus norvegicus fibroblast growth factor receptor 3 (Fgfr3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence IDA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with fibroblast growth factor to initiate a change in cell activity [goid 5007] [evidence ISS]; Combining with fibroblast growth factor to initiate a change in cell activity [goid 5007] [evidence NAS]; Combining with fibroblast growth factor to initiate a change in cell activity [goid 5007] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence NAS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with fibroblast growth factor [goid 17134] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653226-S	ILMN_65163	JRKL_PREDICTED	XM_235818.4	XM_235818.4		315417	109483069	XM_235818.4	Jrkl_predicted	XP_235818.2	ILMN_1350865	0001410156	S	1962	GACTCACATATTTGCTTCTGTGACTTAGTGATCTCCTCTCTAGGAGTGGC	8	-	10115821-10115870	8q11	PREDICTED: Rattus norvegicus jerky homolog-like (mouse) (predicted) (Jrkl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222325-S	ILMN_264989	LY49I7	NM_001009500.1	NM_001009500.1		494210	57222325	NM_001009500.1	Ly49i7	NP_001009500.1	ILMN_1355591	0002060450	S	312	GGCGATAGAGTGTAGTCCAGGCAATGATCTTCTGGAATTGCTCAACAGAG	4	-	168805413-168805462	4q42	Rattus norvegicus immunoreceptor Ly49i7 (Ly49i7), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639009-S	ILMN_55070	OBOX2_PREDICTED	XM_218245.3	XM_218245.3		292574	109458092	XM_218245.3	Obox2_predicted	XP_218245.3	ILMN_1370464	0005700390	S	578	TAGCTGTTGTTGGTGGTGACCAGGGAGAGCCCATGGCCACAGCCATTCTG	1	+	66908635-66908684	1q12	PREDICTED: Rattus norvegicus oocyte specific homeobox 2 (predicted) (Obox2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14149757-S	ILMN_295397	CHRNA4	NM_024354.1	NM_024354.1		25590	14149757	NM_024354.1	Chrna4	NP_077330.1	ILMN_1372659	0004560037	S	2046	CAGACTATGGGCGTGGTTGGAGAGAAATGAGGGCTGATACAGTTGCAGGC	3	-	170171266-170171315	3q43	Rattus norvegicus cholinergic receptor, nicotinic, alpha 4 (Chrna4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence TAS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IMP]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence ISS]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence IEA]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IEA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence IEA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IEA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence IEA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IEA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence IEA]	 [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence ISS];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]	NARAC	NARAC
Rattus norvegicus	RefSeq	GI_62652762-S	ILMN_282501	GML_PREDICTED	XM_235422.2	XM_235422.2		300019	62652762	XM_235422.2	Gml_predicted	XP_235422.2	ILMN_1357598	0006110673	S	570	GATCGAGGAAGAGAACATTTCGAGAGCTGCGCGTCTGGGGCAGTTCAGCC	7	+	112940790-112940839	7q34	PREDICTED: Rattus norvegicus GPI anchored molecule like protein (predicted) (Gml_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643752-S	ILMN_63194	SSR2_PREDICTED	XM_215619.4	XM_215619.4		295235	109465043	XM_215619.4	Ssr2_predicted	XP_215619.1	ILMN_1363818	0000450121	S	807	ACAGACAGGACTGCCTTTAGCCACAGCTTCAGGGCTTGAGGGTCCCACCA	2	+	180713641-180713690	2q34	PREDICTED: Rattus norvegicus signal sequence receptor, beta (predicted) (Ssr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646136	ILMN_69931	LOC296126	XM_215831.3	XM_215831.3		296126	62646136	XM_215831.3	LOC296126	XP_215831.3	ILMN_1650940	0002680239	S	6106	GTGGTGCTGGTGCAACTAGAGCGAGAGGAGGAAGTCACCGGCCCTGTTAT					PREDICTED: Rattus norvegicus similar to U5 snRNP-specific protein, 200 kDa (LOC296126), mRNA.					
Rattus norvegicus	RefSeq	GI_62646025-S	ILMN_292150	RGD1565143_PREDICTED	XM_001060045.1	XM_001060045.1		296256	109471026	XM_001060045.1	RGD1565143_predicted	XP_001060045.1	ILMN_1367905	0000070075	S	1810	CACCTCAGACTCCAGGGAAGCAGACCATCAGGAGCAACTCCAAAGGCAGC				3q41	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (predicted) (RGD1565143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643320-S	ILMN_267498	MRPL47	NM_001037183.1	NM_001037183.1		294963	81295382	NM_001037183.1	Mrpl47	NP_001032260.1	ILMN_1352371	0002120154	S	499	AGACCCGGTGCTTGGAGACAGGACATCTTTGGAAGAATCGTCTGGCACAA	2	-	118938499-118938505:118939838-118939880	2q25	Rattus norvegicus mitochondrial ribosomal protein L47 (Mrpl47), nuclear gene encoding mitochondrial protein, mRNA.	A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes [goid 5761] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC125055	MGC125055
Rattus norvegicus	RefSeq	GI_45267818-S	ILMN_297706	CAV2	NM_131914.2	NM_131914.2		363425	45267818	NM_131914.2	Cav2	NP_571989.2	ILMN_1374468	0002340397	S	1400	CCAACTTCCCCAGCAAATGTTTTATGACTGGGCTTCATCTGGCTGTGACC	4	+	42938414-42938463	4q21	Rattus norvegicus caveolin 2 (Cav2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the endoplasmic reticulum [goid 7029] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence ISS]; The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere [goid 48278] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IPI]	MGC72322	MGC72322
Rattus norvegicus	RefSeq	GI_62645100-S	ILMN_272320	RGD1562767_PREDICTED	XM_001064489.1	XM_001064489.1		362133	109469897	XM_001064489.1	RGD1562767_predicted	XP_001064489.1	ILMN_1370468	0004280463	S	489	AGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGC				3q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310010M24 (predicted) (RGD1562767_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62339338-S	ILMN_279438	NPBWR1	NM_001014784.1	NM_001014784.1		297795	62339338	NM_001014784.1	Npbwr1	NP_001014784.1	ILMN_1362038	0001240687	S	911	TCAACCCTTTCCTCTATGCCTTCCTGGACGACAGCTTCCGCAGGAGCCTG	5	+	13638004-13638053	5q12	Rattus norvegicus neuropeptides B/W receptor 1 (Npbwr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Gpr7	Gpr7
Rattus norvegicus	RefSeq	GI_47577524	ILMN_270042	OLR49	NM_001000132.1	NM_001000132.1		293211	47577524	NM_001000132.1	Olr49	NP_001000132.1	ILMN_1651190	0002510333	S	629	ATGGCCTGATTGGCAGAGCATTGCAAGGTGTGGGGTCTACCGAGGATCGC	1	+	160490354-160490403	1q32	Rattus norvegicus olfactory receptor 49 (Olr49), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr49; ratchr1-160568743-160569669_ORF	Olr49; ratchr1-160568743-160569669_ORF
Rattus norvegicus	RefSeq	GI_62654474-S	ILMN_285886	DLEC1	XM_001062041.1	XM_001062041.1		501070	109484084	XM_001062041.1	Dlec1	XP_001062041.1	ILMN_1361641	0001780279	S	3674	GCCTTCCAGCCACATATATCAAATCAGCCCCAAGCAGGTGGTCATCCCGG	8	+	124104754-124104793:124104874-124104883	8q32	PREDICTED: Rattus norvegicus deleted in lung and esophageal cancer 1 isoform DLEC1-N1 (Dlec1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_47576414-S	ILMN_278656	OLR898	NM_001000058.1	NM_001000058.1		288811	47576414	NM_001000058.1	Olr898	NP_001000058.1	ILMN_1365099	0005080441	S	410	AAGTGTGTCACCTACTGGTTCTCAGCTCCTGGGTAACTGGGTTCTTAGTT	7	-	3380984-3381033	7q11	Rattus norvegicus olfactory receptor 898 (Olr898), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr898	Olr898
Rattus norvegicus	RefSeq	GI_56090296-S	ILMN_276737	PCBD1	NM_001007601.1	NM_001007601.1		29700	56090296	NM_001007601.1	Pcbd1	NP_001007602.1	ILMN_1358139	0006450113	S	424	CTGACTCTTGCGGTGACCACCATCTCCGTCAGGGAGGGGTATGAGTCCCT	20	+	28453864-28453913	20q11	Rattus norvegicus pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 (Pcbd1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving L-phenylalanine, the levorotatory isomer of 2-amino-3-phenylpropanoic acid [goid 6558] [evidence TAS]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer [goid 43496] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence ISS]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin [goid 4505] [evidence ISS]; Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin [goid 4505] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4-alpha-hydroxypterin = (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7,8-dihydro-6H-pterin + H2O [goid 8124] [evidence TAS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Pcbd; DCoH; TCF1	Pcbd; DCoH; TCF1
Rattus norvegicus	RefSeq	GI_9506486-S	ILMN_287915	CHRND	NM_019298.1	NM_019298.1		54240	9506486	NM_019298.1	Chrnd	NP_062171.1	ILMN_1366954	0006200170	S	1595	GAATTGTCCTTGAGCTTGTGCCTATCTGGGGCTGTGTGGCTGGGCAGAGG	9	+	86004738-86004787	9q35	Rattus norvegicus cholinergic receptor, nicotinic, delta (Chrnd), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]	 [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts [goid 15276] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644307-S	ILMN_266741	ANK2	XM_001076082.1	XM_001076082.1		362036	109467595	XM_001076082.1	Ank2	XP_001076082.1	ILMN_1370876	0004230494	S	12470	GCTGTATCCGCTATTTTGAGCATCCGTGCTAACCTGGGAACTGGCACCTC				2q42	PREDICTED: Rattus norvegicus ankyrin 2, neuronal (Ank2), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Formation of the junction between an axon and the glial cell that forms the myelin sheath. Paranodal junctions form at each paranode, i.e. at the ends of the unmyelinated nodes of Ranvier [goid 30913] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus [goid 51597] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644309-S	ILMN_266741	ANK2	XM_001076082.1	XM_001076082.1		362036	109467595	XM_001076082.1	Ank2	XP_001076082.1	ILMN_1360425	0006380022	S	11117	AGAGGAGCTCTGTGCTGTCAAGGAGAAGAAGGAGCAGGAGGCTTCCAAAG				2q42	PREDICTED: Rattus norvegicus ankyrin 2, neuronal (Ank2), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Formation of the junction between an axon and the glial cell that forms the myelin sheath. Paranodal junctions form at each paranode, i.e. at the ends of the unmyelinated nodes of Ranvier [goid 30913] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus [goid 51597] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658043-S	ILMN_283659	RGD1559643_PREDICTED	XM_001054198.1	XM_001054198.1		498100	109494594	XM_001054198.1	RGD1559643_predicted	XP_001054198.1	ILMN_1372464	0001340452	S	3529	GACGCCAATGACCCCATGCCTGCTAATGGAAGCGTCAAGCAAGCCACGGT				11q22	PREDICTED: Rattus norvegicus similar to hypothetical protein A430031N04 (predicted) (RGD1559643_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666724-S	ILMN_270274	RGD1564437_PREDICTED	XM_001066252.1	XM_001066252.1		302583	109511646	XM_001066252.1	RGD1564437_predicted	XP_001066252.1	ILMN_1372218	0006180280	S	672	AGAGGGCTGGAAAAACACCATTCGCCACAACCTCTGCTCCTTGACCTGCT				Xq14	PREDICTED: Rattus norvegicus similar to forkhead box R2 (predicted) (RGD1564437_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653653-S	ILMN_63927	RGD1561984_PREDICTED	XM_236218.3	XM_236218.3		315642	109483459	XM_236218.3	RGD1561984_predicted	XP_236218.1	ILMN_1357456	0003170044	S	89	ATTGGTAAGCACCGCAAGCACCCAGGAGGCCGAGGGAATGCTGGAGGCGT	8	-	54204679-54204728	8q23	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (predicted) (RGD1561984_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645832-S	ILMN_54893	BUB1_PREDICTED	XM_215849.4	XM_215849.4		296137	109468787	XM_215849.4	Bub1_predicted	XP_215849.3	ILMN_1363050	0006840301	S	2949	GGTTTTCAGTGCCCTGAGATGCTCAGTAACAAGCCATGGAACTACCAGGT	3	-	115326493-115326495:115327551-115327597	3q36	PREDICTED: Rattus norvegicus budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae) (predicted) (Bub1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649184-S	ILMN_61879	IFNA11_PREDICTED	XM_233150.3	XM_233150.3		298211	62649184	XM_233150.3	Ifna11_predicted	XP_233150.2	ILMN_1350413	0004810725	S	30	CAACCCCGAGAACCAGCAGCATCTGCAAGATCCATAATGGCTAGGCTTTG				5q32	PREDICTED: Rattus norvegicus interferon alpha family, gene 11 (predicted) (Ifna11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651771	ILMN_270510	RGD1307067_PREDICTED	XM_001077056.1	XM_001077056.1		362840	109481615	XM_001077056.1	RGD1307067_predicted	XP_001077056.1	ILMN_1649800	0006940093	S	1715	GAGCACATGTATGCACGCCATGTGCCCGTGAACCTGGACAAGCTTCGTCC				7q11	PREDICTED: Rattus norvegicus LOC362840 (predicted) (RGD1307067_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659863-S	ILMN_52391	RGD1561867_PREDICTED	XM_573527.2	XM_573527.2		498299	109498277	XM_573527.2	RGD1561867_predicted	XP_573527.1	ILMN_1367778	0004050605	S	1144	TGTAGCTGTGCCTCGGATGGGGCGCTCATACCCAGGAGGCTGGAGCCATA	13	+	96667372-96667421	13q26	PREDICTED: Rattus norvegicus similar to Stra3 protein (predicted) (RGD1561867_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657325-S	ILMN_271295	FADS6_PREDICTED	XM_001081675.1	XM_001081675.1		303671	109492213	XM_001081675.1	Fads6_predicted	XP_001081675.1	ILMN_1372468	0002570603	S	1627	CGGGGACAAAATCGGAGAAGGAACTGCTGGCTTTGAGCGTGACCTCGGCT				10q32.2	PREDICTED: Rattus norvegicus fatty acid desaturase domain family, member 6 (predicted) (Fads6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649396-S	ILMN_279119	GPX7_PREDICTED	XM_001060175.1	XM_001060175.1		298376	109476880	XM_001060175.1	Gpx7_predicted	XP_001060175.1	ILMN_1373821	0005700020	S	320	ACCAGACAGCAACAGGGAGATTGAGAACTTTGCCCGCCGCACCTACAGTG				5q35	PREDICTED: Rattus norvegicus glutathione peroxidase 7 (predicted) (Gpx7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664662-S	ILMN_53423	SETBP1_PREDICTED	XM_225744.3	XM_225744.3		291423	62664662	XM_225744.3	Setbp1_predicted	XP_225744.3	ILMN_1353487	0005340497	S	4935	CGTGAAGCCAGTTGAATTCCCACATGTAGCACCGTCCACTCCCACTGACA				18q12.3	PREDICTED: Rattus norvegicus SET binding protein 1 (predicted) (Setbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655820-S	ILMN_289941	ABCA3	XM_001054650.1	XM_001054650.1		302973	109490296	XM_001054650.1	Abca3	XP_001054650.1	ILMN_1354174	0002190064	S	5455	CCTGGAGAAGGCCAAGGAGAAGTATGGAGTGGACGATTACTCTGTGAGTC				10q12	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 3, transcript variant 3 (Abca3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; A membrane-bounded organelle, specialized for the storage and secretion various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome [goid 42599] [evidence IDA]; A membrane-bounded organelle, specialized for the storage and secretion various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome [goid 42599] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654285-S	ILMN_49525	GMPPB_PREDICTED	XM_343482.3	XM_343482.3		363145	109483953	XM_343482.3	Gmppb_predicted	XP_343483.3	ILMN_1350546	0004070685	S	1120	CGTGCTGCCCCACAAGTCTATCGGGGAGTCGGTGCCAGAACCTCGTATTA	8	+	113319263-113319312	8q32	PREDICTED: Rattus norvegicus GDP-mannose pyrophosphorylase B (predicted) (Gmppb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654971-S	ILMN_65699	LOC501131	XM_576551.1	XM_576551.1		501131	62654971	XM_576551.1	LOC501131	XP_576551.1	ILMN_1363001	0000070673	S	616	CTGAAGGAGGAAATTTTGGTGGAGGCAGTTCCTATGGTGCTGGCTATGGA				9q22	PREDICTED: Rattus norvegicus similar to heterogeneous nuclear ribonucleoprotein A3 (LOC501131), mRNA.					
Rattus norvegicus	RefSeq	GI_19173743-S	ILMN_277964	ZFP347	NM_133390.1	NM_133390.1		170902	19173743	NM_133390.1	Zfp347	NP_596881.1	ILMN_1371342	0002260114	S	4715	GCCATGCATACCAAGCACATTTTCCCCCCATTGAGTCATCTTCCTGGTAC	7	+	8940569-8940590	7q11	Rattus norvegicus zinc finger protein 347 (Zfp347), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Giot2	Giot2
Rattus norvegicus	RefSeq	GI_62664979-S	ILMN_48321	LOC498925	XM_574213.1	XM_574213.1		498925	62664979	XM_574213.1	LOC498925	XP_574213.1	ILMN_1372725	0005700082	S	789	CATTGTCAGAGGGCTCAGTCTCCTCAGAAGAGCAGCGACACAGGGCTAGG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC498925), mRNA.					
Rattus norvegicus	RefSeq	GI_32452539-S	ILMN_296265	RHOT2	NM_181823.1	NM_181823.1		287156	32452539	NM_181823.1	Rhot2	NP_861544.1	ILMN_1361529	0004780504	S	2596	GCCAGTGGTCTTGATTGGGGGCAGGAGGCAATGGTCAAATCAGGGAGGGA	10	-	15104457-15104506	10q12	Rattus norvegicus ras homolog gene family, member T2 (Rhot2), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 31307] [evidence ISS]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 31307] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium at the level of the cell [goid 19725] [evidence ISS]; The directed movement of a mitochondrion along a microtubule, mediated by motor proteins [goid 47497] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Miro2	Miro2
Rattus norvegicus	RefSeq	GI_27718480-S	ILMN_277710	LOC689246	XM_001070116.1	XM_001070116.1		689246	109501515	XM_001070116.1	LOC689246	XP_001070116.1	ILMN_1349539	0006100324	S	574	CTCGTCCATGGGAATGCAGGTATCTCTAGAAGTGCCGCCTTTGTTATTGC	15	+	21259314-21259345:21259940-21259957	15p14	PREDICTED: Rattus norvegicus similar to Serine/threonine/tyrosine-interacting protein (Protein tyrosine phosphatase-like protein) (Phosphoserine/threonine/tyrosine interaction protein) (LOC689246), mRNA.					
Rattus norvegicus	RefSeq	GI_62643728-S	ILMN_61865	RGD1309453_PREDICTED	XM_227479.4	XM_227479.4		310689	109465008	XM_227479.4	RGD1309453_predicted	XP_227479.4	ILMN_1364078	0003440671	S	1840	TCTTGCCTGGGAACAAGGTCCTCTTGCACCTCAACCTCCTCCGAAACCAA	2	-	179799204-179799212:179799565-179799605	2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32884 (predicted), transcript variant 2 (RGD1309453_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664327-S	ILMN_61734	RBM27_PREDICTED	XM_341605.3	XM_341605.3		361317	109506531	XM_341605.3	Rbm27_predicted	XP_341606.1	ILMN_1370384	0004560438	S	5875	GCTGCCAGTGTGACCAGTCAGTAAGAGTTTCTAGATTTCTGCCCAAGCCT	18	+	35535798-35535847	18p11	PREDICTED: Rattus norvegicus RNA binding motif protein 27 (predicted) (Rbm27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647129-S	ILMN_270178	EPHB6	XM_001068490.1	XM_001068490.1		312275	109473350	XM_001068490.1	Ephb6	XP_001068490.1	ILMN_1363836	0001230717	S	3838	CAGGCTCGGTGGAAGTGTAAAGCCTGGTCAGCAATCTGTGAGCTGCCGCT				4q22	PREDICTED: Rattus norvegicus Eph receptor B6 (Ephb6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658315-S	ILMN_267125	RGD1563971_PREDICTED	XM_344066.2	XM_344066.2		363858	62658315	XM_344066.2	RGD1563971_predicted	XP_344067.2	ILMN_1362766	0005420465	S	2049	GTCCCACCCTTCTGACTCTGCCTGAGATGGAGAGCTTAACTTAGTGGGGC	12	-	2470608-2470657	12p12	PREDICTED: Rattus norvegicus similar to trafficking protein particle complex 5 (predicted) (RGD1563971_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27665431	ILMN_268485	HOXC12_PREDICTED	XM_001068476.1	XM_001068476.1		300262	109483020	XM_001068476.1	Hoxc12_predicted	XP_001068476.1	ILMN_1649969	0006040438	S	499	GACTCCAGTTCATCCCTACTCAACGAGGGCAATAAGGGCGCCAGTGCTGG				7q36	PREDICTED: Rattus norvegicus homeo box C12 (predicted) (Hoxc12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718678-S	ILMN_53053	LOC503392	XM_578930.1	XM_578930.1		503392	62718678	XM_578930.1	LOC503392	XP_578930.1	ILMN_1355420	0006760102	S	106	GTGTGCAAACTCTTCCTGACCACCTGGCAGAGGGACAAGTGTCATTCAGC					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503392), mRNA.					
Rattus norvegicus	RefSeq	GI_62654962-S	ILMN_65166	IL18RAP_PREDICTED	XM_237089.3	XM_237089.3		301366	62654962	XM_237089.3	Il18rap_predicted	XP_237089.3	ILMN_1353178	0005690575	S	1690	CCCCTGAGAAGGACCTAGCAACGCAGAAACCCTTGGGAGGAATGCCCAAC					PREDICTED: Rattus norvegicus interleukin 18 receptor accessory protein (predicted) (Il18rap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662517-S	ILMN_56058	LOC498620	XM_573898.1	XM_573898.1		498620	62662517	XM_573898.1	LOC498620	XP_573898.1	ILMN_1362389	0004120452	S	966	CCTCCAGCAAAGGTGAAGTCTGACATAGACAGCAACATCTTAACCGGTCA					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC498620), mRNA.					
Rattus norvegicus	RefSeq	GI_62638854-S	ILMN_292746	LOC691325	XM_001077719.1	XM_001077719.1		691325	109458090	XM_001077719.1	LOC691325	XP_001077719.1	ILMN_1366681	0006130300	S	374	TGGAGCTGGCAACCTTGTTTGGTGTGACAGAGAATGAGATCAAGGTCTGG	1	+	66893183-66893226:66893663-66893668	1q12	PREDICTED: Rattus norvegicus similar to oocyte specific homeobox 3 (LOC691325), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646651-S	ILMN_275522	CENTG3_PREDICTED	XM_001060957.1	XM_001060957.1		362300	109472947	XM_001060957.1	Centg3_predicted	XP_001060957.1	ILMN_1369570	0000770450	S	3337	TTACTCCGGGCCGTGGTGGAGGATGACCTACGACTGCTGGTGATGCTGCT				4q11	PREDICTED: Rattus norvegicus centaurin, gamma 3 (predicted) (Centg3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605939-A	ILMN_270074	RXFP3	NM_001008310.1	NM_001008310.1		294807	56605939	NM_001008310.1	Rxfp3	NP_001008311.1	ILMN_1376799	0006400711	S	1104	GGAGTACTTTCAGTGCCAAGTGTACGCGTTCCCAGTCAGCGTGTGCCTGG	2	-	60391054-60391103	2q16	Rattus norvegicus relaxin family peptide receptor 3 (Rxfp3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an N-formyl peptide to initiate a change in cell activity [goid 4982] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence ISS]	Salpr; GPCR135; RGD1311550	Salpr; GPCR135; RGD1311550
Rattus norvegicus	RefSeq	GI_13591897-S	ILMN_269567	INPP4A	NM_031002.1	NM_031002.1		80849	13591897	NM_031002.1	Inpp4a	NP_112264.1	ILMN_1370488	0004610156	S	5260	CACCTTTCCCCATTTAGGAAGGAATGTGCAGTCTCTGGGCGGTGGGCATG	9	+	36356598-36356647	9q21	Rattus norvegicus inositol polyphosphate-4-phosphatase, type 1 (Inpp4a), mRNA.			Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate [goid 16316] [evidence TAS]; Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate [goid 16316] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate [goid 34597] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655309-S	ILMN_56315	LOC503261	XM_578796.1	XM_578796.1		503261	62655309	XM_578796.1	LOC503261	XP_578796.1	ILMN_1366991	0006220408	S	588	GCTTTACTTTCTCCTCCCTCAAAGGCAACTGGAGCCCCTGGAGGACCTGG					PREDICTED: Rattus norvegicus similar to Akr1c18 protein (LOC503261), mRNA.					
Rattus norvegicus	RefSeq	GI_62654288-S	ILMN_49705	RGD1311223_PREDICTED	XM_345971.3	XM_345971.3		367146	109483826	XM_345971.3	RGD1311223_predicted	XP_345972.3	ILMN_1352791	0002640184	S	1361	CTGCAGAGAGAAATCCAGATCCCGGTCACGAATATCCGGGCAGATGGAGG	8	+	101237313-101237350:101238452-101238463	8q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330018K18 gene (predicted) (RGD1311223_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527092-S	ILMN_271073	RGD1305225	NM_001009659.1	NM_001009659.1		297458	57527092	NM_001009659.1	RGD1305225	NP_001009659.1	ILMN_1365027	0005910176	S	1214	GATTCTGGTCGAAGAAGCAGTCAGAACTCCGGGCTGAGCGAGATCCTGAG	4	+	126100327-126100376	4q34	Rattus norvegicus similar to RIKEN cDNA C130022K22 gene (RGD1305225), mRNA.				MGC93974	MGC93974
Rattus norvegicus	RefSeq	GI_62650278-S	ILMN_51819	LOC500611	XM_580092.1	XM_580092.1		500611	62650278	XM_580092.1	LOC500611	XP_580092.1	ILMN_1364368	0002480019	S	301	GGGTGCTGAGATGGGCTAAAATGCCCAGAATCCACTACAGCCTTGACAGG					PREDICTED: Rattus norvegicus LOC500611 (LOC500611), mRNA.					
Rattus norvegicus	RefSeq	GI_6978554-S	ILMN_264123	ATP2A3	NM_012914.1	NM_012914.1		25391	6978554	NM_012914.1	Atp2a3	NP_037046.1	ILMN_1368372	0007000021	S	4156	GCATCATGGGAAACGGAGAAAGCGCCTGTCAGTGTGACTTAGCTCTTCCC	10	+	59883771-59883820	10q24	Rattus norvegicus ATPase, Ca++ transporting, ubiquitous (Atp2a3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence TAS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	SERCA3	SERCA3
Rattus norvegicus	RefSeq	GI_34861716-A	ILMN_264058	MSX3	XM_001058715.1	XM_001058715.1		114504	109459575	XM_001058715.1	Msx3	XP_001058715.1	ILMN_1376374	0002470097	S	812	TGTTCCTGGGATCCTCGCTGGGCCGGTCGCGGCTTATGGCATGTACTACT	1	-	199847210-199847259	1q41	PREDICTED: Rattus norvegicus homeo box, msh-like 3 (Msx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19424331-S	ILMN_274586	TAF9B	NM_133615.1	NM_133615.1		171152	19424331	NM_133615.1	Taf9b	NP_598299.1	ILMN_1360997	0001240717	S	2325	CCCCTGAGCCTTGTTCTCACTAGTAGTAGGGGAATAACATCTACCCTGCC	X	-	94342158-94342207	Xq31	Rattus norvegicus TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf9b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Dn7; TAFII31	Dn7; TAFII31
Rattus norvegicus	RefSeq	GI_25742792-S	ILMN_272382	SEMA6C	NM_017308.1	NM_017308.1		29744	25742792	NM_017308.1	Sema6c	NP_059004.1	ILMN_1365405	0006100292	S	3024	TTTATTGACTGTCTTTCCCCCTGTCCTTTGGCGAGGAGCTCGCCGCTCGG	2	+	190078597-190078646	2q34	Rattus norvegicus sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C (Sema6c), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.7226-S	ILMN_160835	RN.7226-S	Rn.7226-S		Rn.7226-S		24996709	CA505755			ILMN_1530207	0001070288	S	69	GTCCACCTTCCAAAGGGCCAAATAAAAATAGACCTTTACAAATTAAAAAA					UI-R-FJ0-cpz-k-22-0-UI.s1 UI-R-FJ0 Rattus norvegicus cDNA clone UI-R-FJ0-cpz-k-22-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_13242260-S	ILMN_299969	FREQ	NM_024366.1	NM_024366.1		65153	13242260	NM_024366.1	Freq	NP_077342.1	ILMN_1369336	0004070288	S	1692	GGCTTCTCTGGGAACTGCTGGCCTCTGCCTCCTTGATGCTAACTAAGGGG	3	+	10354073-10354122	3p12	Rattus norvegicus frequenin homolog (Drosophila) (Freq), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IPI]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of exocytosis [goid 45921] [evidence IDA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IDA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Stops, prevents or reduces the activity of a calcium-dependent protein kinase [goid 8427] [evidence TAS]	Ncs1	Ncs1
Rattus norvegicus	RefSeq	GI_62653785-S	ILMN_269116	RGD1565253_PREDICTED	XM_001073932.1	XM_001073932.1		363073	109484814	XM_001073932.1	RGD1565253_predicted	XP_001073932.1	ILMN_1366769	0000450026	S	1823	CAGCAGGAGAGAAGCTTGGGAAAGAAGCAAGGTCCTTGTATGAGCGCGGC				8q24	PREDICTED: Rattus norvegicus similar to D-glucuronyl C5-epimerase (predicted) (RGD1565253_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717886-S	ILMN_53919	LOC501245	XM_576664.1	XM_576664.1		501245	62717886	XM_576664.1	LOC501245	XP_576664.1	ILMN_1361652	0001340403	S	1449	GACTACCATCACTAACTGCTTGTCTACTATGTCTCCAAGGCAAGCCACAG					PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC501245), mRNA.					
Rattus norvegicus	RefSeq	GI_62644837-S	ILMN_51337	SLC27A4	XM_231115.4	XM_231115.4		311839	109467988	XM_231115.4	Slc27a4	XP_231115.3	ILMN_1360053	0002810750	S	2635	GACTCAGGAAGCTAAGTGGCCAGAGACTGAAGTGGCCAGCCATCCCGTGT	3	+	8802452-8802501	3p12	PREDICTED: Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 4 (Slc27a4), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62640967-S	ILMN_63187	LOC365303	XM_577817.1	XM_577817.1		365303	62640967	XM_577817.1	LOC365303	XP_577817.1	ILMN_1353856	0005390736	S	215	GCAGGCCAACAATGCAAAGGCAGCAGAGGCCAAAGCTCCACCTAAGGCCC				1q32	PREDICTED: Rattus norvegicus similar to ribosomal protein (LOC365303), mRNA.					
Rattus norvegicus	RefSeq	GI_53850647-S	ILMN_296016	PLA2G6	NM_001005560.1	NM_001005560.1		360426	53850647	NM_001005560.1	Pla2g6	NP_001005560.1	ILMN_1366781	0004230711	S	2880	TCCAGGCTAATGAAACCCAGCGCCATTCCGCCATTCGACTTTGCCCCTCG	7	-	117266931-117266980	7q34	Rattus norvegicus phospholipase A2, group VI (cytosolic, calcium-independent) (Pla2g6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate; does not require Ca2+ [goid 47499] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC93880; iPla2	MGC93880; iPla2
Rattus norvegicus	RefSeq	GI_62646798-S	ILMN_59011	RGD1562992_PREDICTED	XM_575362.2	XM_575362.2		500008	109471706	XM_575362.2	RGD1562992_predicted	XP_575362.2	ILMN_1362690	0005050619	S	1119	ACGGTGGAAGGAACTATGGTCCTGGGGGAAGTGGAGGAACTGGGGGCTAT	4	-	27723898-27723947	4q13	PREDICTED: Rattus norvegicus similar to heterogeneous nuclear ribonucleoprotein A2/B1 (predicted) (RGD1562992_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718552-S	ILMN_295635	LOC680843	XR_005889.1	XR_005889.1		680843	109478418	XR_005889.1	LOC680843		ILMN_1372839	0004150112	S	629	CCAGAAAGAAGGCAGGCAACGCATAGTGGGGTATGCAACTGTCAGAGCTG	6	+	103699129-103699178	6q24	PREDICTED: Rattus norvegicus similar to DnaJ (Hsp40) homolog, subfamily C, member 17 (LOC680843), mRNA.					
Rattus norvegicus	RefSeq	GI_62657546	ILMN_272389	RGD1306781_PREDICTED	XM_001063932.1	XM_001063932.1		363720	109493759	XM_001063932.1	RGD1306781_predicted	XP_001063932.1	ILMN_1650031	0005050390	S	2643	GGCTCGGCCGTAGACTCCATAACGGTTCTGTGTTCAGTGCTGACATCTAC				11p12	PREDICTED: Rattus norvegicus similar to CGI-84 protein (predicted) (RGD1306781_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653099-S	ILMN_57040	LOC503171	XM_578694.1	XM_578694.1		503171	62653099	XM_578694.1	LOC503171	XP_578694.1	ILMN_1358184	0001050364	S	15675	AAGAGCCTTTGGGACCTAGCAGGTAAGCGGCTGGAAGAAGATTTAGAGCC					PREDICTED: Rattus norvegicus similar to Mucin 2 precursor (Intestinal mucin 2) (LOC503171), mRNA.					
Rattus norvegicus	RefSeq	GI_57012439-S	ILMN_301708	KRT33B	NM_001008819.1	NM_001008819.1		450227	57012439	NM_001008819.1	Krt33b	NP_001008819.1	ILMN_1366719	0000430292	S	1159	ACAAATCCTTGTGTCACACGCCCCCGATGTGGACCCTGCGGTACCTTTGG	10	-	88954478-88954527	10q32.1	Rattus norvegicus keratin 33B (Krt33b), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666593	ILMN_263718	SUV39H1_PREDICTED	XM_001063363.1	XM_001063363.1		302553	109511576	XM_001063363.1	Suv39h1_predicted	XP_001063363.1	ILMN_1651164	0000130369	S	2665	CCCCTTTGTGAAACTCTGTACCCTGCTACCAGATGCCAGGTCTGTGTGTG				Xq13	PREDICTED: Rattus norvegicus suppressor of variegation 3-9 homolog 1 (Drosophila) (predicted) (Suv39h1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645056-S	ILMN_62310	LOC499794	XM_575130.1	XM_575130.1		499794	62645056	XM_575130.1	LOC499794	XP_575130.1	ILMN_1373191	0003710358	S	1	TGGGGACTTTGGTGTGCAATGGTTGCAAACAGCAGCCTCCTTGGCTCCAG				3q11	PREDICTED: Rattus norvegicus similar to ribosomal protein L10 (LOC499794), mRNA.					
Rattus norvegicus	RefSeq	GI_62648323-S	ILMN_63122	CASC1_PREDICTED	XM_216310.4	XM_216310.4		297720	109472833	XM_216310.4	Casc1_predicted	XP_216310.4	ILMN_1358316	0002360750	S	2026	ACAGGGCGCAGATGCTCAAGATGCAGGAAGAAAGCGACCAGTTCTCCGAG	4	-	182823352-182823401	4q44	PREDICTED: Rattus norvegicus cancer susceptibility candidate 1 (predicted) (Casc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648321-S	ILMN_63122	CASC1_PREDICTED	XM_216310.4	XM_216310.4		297720	109472833	XM_216310.4	Casc1_predicted	XP_216310.4	ILMN_1370924	0006380435	S	2773	CTGTGGCTCTCTGGGCTCTTCCTCGTACTGTTCGCCGGGTTGATGAGCGT	4	-	182822605-182822654	4q44	PREDICTED: Rattus norvegicus cancer susceptibility candidate 1 (predicted) (Casc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605657-S	ILMN_279087	CRKL	NM_001008284.1	NM_001008284.1		287942	56605657	NM_001008284.1	Crkl	NP_001008285.1	ILMN_1369034	0006940411	S	2545	CTGACGAGGACAAGCCTCCACCCAGCGCAGCAGACTCAGAACAGTGGTTA	11	-	85520422-85520471	11q23	Rattus norvegicus v-crk sarcoma virus CT10 oncogene homolog (avian)-like (Crkl), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence IEA]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone [goid 60017] [evidence IEA]; The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone [goid 60017] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664311	ILMN_271699	NDFIP1	NM_001013059.1	NM_001013059.1		291609	61556825	NM_001013059.1	Ndfip1	NP_001013077.1	ILMN_1650482	0001190181	S	557	CTCAGCTGCGGGAAGGTATGGGGCCATCTCAGGATTTGGTCTTTCTCTAA	18	+	31387468-31387517	18p11	Rattus norvegicus Nedd4 family interacting protein 1 (Ndfip1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655216-S	ILMN_50116	LOC501164	XM_576588.1	XM_576588.1		501164	62655216	XM_576588.1	LOC501164	XP_576588.1	ILMN_1353237	0002350600	S	2763	AATTGTCCGAGGTGCTGAGCTGGGCGGGACCGGAATCCTCCAGGGAGAGT				9q33	PREDICTED: Rattus norvegicus similar to cyclin-dependent kinase 5 activator isoform p39 precursor (LOC501164), mRNA.					
Rattus norvegicus	RefSeq	GI_62647175-S	ILMN_273289	TAS2R143	NM_001025061.1	NM_001025061.1		502756	68163554	NM_001025061.1	Tas2r143	NP_001020232.1	ILMN_1360260	0006940463	S	654	GGATCCCCGTACACAGGCACACACCATGGCTCTGAAATCCCTTACTGTCT	4	+	70170361-70170410	4q23	Rattus norvegicus taste receptor, type 2, member 143 (Tas2r143), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656378-S	ILMN_63224	NALP1_PREDICTED	XM_340835.2	XM_340835.2		360557	62656378	XM_340835.2	Nalp1_predicted	XP_340836.2	ILMN_1365810	0000110465	S	7356	TCCCAGGAATACAAACACACCTTGTGGGACCAGCGAGAGACACCTGACAC				10q24	PREDICTED: Rattus norvegicus NACHT, leucine rich repeat and PYD containing 1 (predicted) (Nalp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556916-S	ILMN_278459	FHL5	NM_001013088.1	NM_001013088.1		297954	61556916	NM_001013088.1	Fhl5	NP_001013106.1	ILMN_1356938	0002690019	S	943	CAACTGTGGAAAGTGCTCGGTCTCCTTGGTTGGGGAAGGATTCTTGACCC	5	-	40253325-40253374	5q21	Rattus norvegicus four and a half LIM domains 5 (Fhl5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27684506-S	ILMN_161761	LOC309451	XM_219953.1	XM_219953.1			27684506	XM_219953.1	LOC309451		ILMN_2040310	0001340373	S	6204	CTACTGCTGGAGAGGAGCAACGACCGGTCCAGGGAAGGGCTCGGAAAGAA										
Rattus norvegicus	RefSeq	GI_62641954-S	ILMN_301725	ATHL1_PREDICTED	XR_007957.1	XR_007957.1		309103	109463175	XR_007957.1	Athl1_predicted		ILMN_1351874	0004280088	S	1725	AAATGGGTCCGGTGCAGTGAACTTCTTAACAGGCATGGGGGGCTTCCTGC				1q41	PREDICTED: Rattus norvegicus ATH1, acid trehalase-like 1 (yeast) (predicted) (Athl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718259-S	ILMN_277415	LOC688679	XM_001058650.1	XM_001058650.1		688679	109513366	XM_001058650.1	LOC688679	XP_001058650.1	ILMN_1374788	0005080403	S	1680	CAGCAGGTTATTAGGCTGACCTGGACCTATGGTGTCATACCAGGTTTTAG	Un|NW_047879.1	-	211490-211539		PREDICTED: Rattus norvegicus hypothetical protein LOC688679 (LOC688679), mRNA.					
Rattus norvegicus	RefSeq	GI_62652131-S	ILMN_263316	CPSF6_PREDICTED	XM_001080973.1	XM_001080973.1		299811	109481990	XM_001080973.1	Cpsf6_predicted	XP_001080973.1	ILMN_1366756	0002630164	S	2151	CCTTCCAAGACAAAGCAGTCTTCACGGGGAAAGTGACGCTTGTCCAGCAG				7q22	PREDICTED: Rattus norvegicus cleavage and polyadenylation specific factor 6, 68kDa (predicted) (Cpsf6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577038-S	ILMN_297647	OLR777	NM_001000579.1	NM_001000579.1		366151	47577038	NM_001000579.1	Olr777	NP_001000579.1	ILMN_1365835	0004780019	S	660	CATCCTGTTCAGTGTCTGGAAACATTCATCAGGTGGTTCATCCAAAGCCC	3	-	97471807-97471856	3q34	Rattus norvegicus olfactory receptor 777 (Olr777), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-97368944-97368006_ORF; Olr777	ratchr3-97368944-97368006_ORF; Olr777
Rattus norvegicus	RefSeq	GI_47576180-S	ILMN_271270	OLR1351	NM_001000751.1	NM_001000751.1		405021	47576180	NM_001000751.1	Olr1351	NP_001000751.1	ILMN_1359792	0001990193	S	302	GTGCCACTCAGTTCTTCTTTTTCTCCGTGCTGGCTACTACTGAGGCTCTG	9	+	91808511-91808560	9q36	Rattus norvegicus olfactory receptor 1351 (Olr1351), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1351	Olr1351
Rattus norvegicus	RefSeq	GI_62645439-S	ILMN_272169	RGD1566326_PREDICTED	XM_001078943.1	XM_001078943.1		295941	109470365	XM_001078943.1	RGD1566326_predicted	XP_001078943.1	ILMN_1369753	0004070348	S	404	AAAGAGAAGGGCATCTGGGTTCAGTTGAAGCGCCAGCCTGTGCCACCCAG				3q31	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1566326_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928889-S	ILMN_266020	RAMP1	NM_031645.1	NM_031645.1		58965	13928889	NM_031645.1	Ramp1	NP_113833.1	ILMN_1374522	0000940500	S	469	ACAGAGGGCATCGTGTAGGTGTCCCAGGTGATGGGGGATTGGGGAACCAT	9	+	90449699-90449716:90449717-90449748	9q36	Rattus norvegicus receptor (G protein-coupled) activity modifying protein 1 (Ramp1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IC ]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA];  [goid 15027] [evidence IDA];  [goid 15027] [evidence IMP];  [goid 15027] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651684-S	ILMN_54279	LOC314647	XM_234928.3	XM_234928.3		314647	62651684	XM_234928.3	LOC314647	XP_234928.3	ILMN_1368676	0006450594	S	1506	GTGGCCCCAGACCCTACGTGATTTGTACAACGGGCTTAGTTTCTGCTACG				7q11	PREDICTED: Rattus norvegicus similar to bruno-like 5, RNA binding protein (LOC314647), mRNA.					
Rattus norvegicus	RefSeq	GI_12408317-S	ILMN_292352	UNC13A	NM_022861.1	NM_022861.1		64829	12408317	NM_022861.1	Unc13a	NP_074052.1	ILMN_1352581	0004540746	S	6520	CTGGTGTCTGCAAAATACAGGGCGGGATGGACTCTCAAAAGCACACCGGC				16p14	Rattus norvegicus unc-13 homolog A (C. elegans) (Unc13a), mRNA.	Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IDA]; Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence ISS]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Unc13h1	Unc13h1
Rattus norvegicus	RefSeq	GI_62656898-S	ILMN_53856	HOXB2_PREDICTED	XM_220894.4	XM_220894.4		303489	109488855	XM_220894.4	Hoxb2_predicted	XP_220894.2	ILMN_1360789	0000940204	S	1017	GCTGGACTTCTTCACCAGCACGCTCTGTGCCATCGACTTGCAGTTTCCCT	10	+	85087182-85087231	10q31	PREDICTED: Rattus norvegicus homeo box B2 (predicted) (Hoxb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658358	ILMN_67086	RGD1561234_PREDICTED	XM_221790.4	XM_221790.4		288387	109494961	XM_221790.4	RGD1561234_predicted	XP_221790.4	ILMN_1650926	0002190484	S	396	GAAGAAACGCAATACCTGGATGGGGCTCTCAGACAGAAAGGAAGAAGGCC	12	-	1881776-1881825	12p12	PREDICTED: Rattus norvegicus similar to SIGNR4 (predicted) (RGD1561234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647359-S	ILMN_63289	LOC500153	XM_575505.1	XM_575505.1		500153	62647359	XM_575505.1	LOC500153	XP_575505.1	ILMN_1370094	0005130242	S	1943	CACTGCTACTGAAGATGAAGAGAGTGCTGCAAGAGGTAGGGCTGCTCGGC				4q24	PREDICTED: Rattus norvegicus similar to KIAA1680 protein (LOC500153), mRNA.					
Rattus norvegicus	RefSeq	GI_61557171-S	ILMN_297949	GULP1	NM_001013171.1	NM_001013171.1		314543	61557171	NM_001013171.1	Gulp1	NP_001013189.1	ILMN_1352711	0003610504	S	2235	GCCGGAGACTTATGGAAGTGTTACAGGTACCTTTTCAGTAGAAGCAGAAC	9	+	43796833-43796882	9q22	Rattus norvegicus GULP, engulfment adaptor PTB domain containing 1 (Gulp1), mRNA.		The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence IEA]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	CED-6	CED-6
Rattus norvegicus	RefSeq	GI_13540637-S	ILMN_270674	ERAP1	NM_030836.1	NM_030836.1		80897	13540637	NM_030836.1	Erap1	NP_110463.1	ILMN_1368616	0003450070	S	4337	GCCCCATTCCTTACAGTGTTGGCAGTAATAACACACAAGGTCAGGCTTCA	2	+	1491983-1492032	2q11	Rattus norvegicus endoplasmic reticulum aminopeptidase 1 (Erap1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence TAS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IMP]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Interacting selectively with the interleukin-6 receptor [goid 5138] [evidence ISS]; Interacting selectively with the interleukin-6 receptor [goid 5138] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IMP]; Interacting selectively with the interleukin-6 receptor [goid 5138] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Interacting selectively with the interleukin-6 receptor [goid 5138] [evidence ISS]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC112613; ERAP1; Appils	MGC112613; ERAP1; Appils
Rattus norvegicus	RefSeq	GI_62650942-S	ILMN_280095	RGD1560227_PREDICTED	XR_007282.1	XR_007282.1		302105	109479576	XR_007282.1	RGD1560227_predicted		ILMN_1351379	0004730411	S	769	ACCAGCCCCCCAGGACTGTCGAAGGCCTCAGTGTCCTCAGAACGGGACTA				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (predicted) (RGD1560227_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656474-S	ILMN_70044	RGD1308747_PREDICTED	XM_340836.3	XM_340836.3		360559	109488424	XM_340836.3	RGD1308747_predicted	XP_340837.2	ILMN_1374467	0004120711	S	1238	GAGGACCCACTTTCTGCTCCCCACCACCAGAACCCCACAGGAAGAGAGAT	10	+	58899849-58899898	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10156 (predicted) (RGD1308747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665955-S	ILMN_51198	LOC499429	XM_574753.1	XM_574753.1		499429	62665955	XM_574753.1	LOC499429	XP_574753.1	ILMN_1352449	0003120736	S	1214	GGCTGCTCTACGCTCCGCCAAAAGTAAAGAGTGTCACAGCCCCAAACAGA				20q11	PREDICTED: Rattus norvegicus similar to spatial-delta (LOC499429), mRNA.					
Rattus norvegicus	RefSeq	GI_62663597-S	ILMN_58516	HIST1H2AO_PREDICTED	XM_344599.2	XM_344599.2		364723	62663597	XM_344599.2	Hist1h2ao_predicted	XP_344600.2	ILMN_1364863	0002640746	S	384	TGTCCGGGTGCGTGTCTCGAAAGGAACCCTTGTGTGTGTCGAATTCACAG				17q11	PREDICTED: Rattus norvegicus histone 1, H2ao (predicted) (Hist1h2ao_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643033-S	ILMN_50973	IL7R_PREDICTED	XM_226824.4	XM_226824.4		294797	109464493	XM_226824.4	Il7r_predicted	XP_226824.4	ILMN_1358648	0002650044	S	1063	GGCAGCACACCAGAAACGTTCCGAAGAGAATCACCCCTAAGATGCCTGGC	2	-	59105927-59105976	2q16	PREDICTED: Rattus norvegicus interleukin 7 receptor (predicted) (Il7r_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540627-S	ILMN_287763	GPCR12	NM_001037295.1	NM_001037295.1		80840	82617588	NM_001037295.1	Gpcr12	NP_001032372.1	ILMN_1373111	0007050110	S	1210	GTGTAGCAGCGTTCTCCCCACAGGACGCTGGCTCTACTAAGCGCCCCACT				12p11	Rattus norvegicus G-protein coupled receptor 12 (Gpcr12), transcript variant 1, mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Gpr12; MGC156481	Gpr12; MGC156481
Rattus norvegicus	RefSeq	GI_62649817-S	ILMN_49118	RGD1565213_PREDICTED	XM_342941.3	XM_342941.3		362623	109475639	XM_342941.3	RGD1565213_predicted	XP_342942.3	ILMN_1374213	0000780180	S	2145	GCTTTACCTACACGCCCGAGTGACCCTCTGTGACAAGCAAGTGGGACGAC	5	-	152935564-152935613	5q36	PREDICTED: Rattus norvegicus similar to channel, sperm associated 4 (predicted) (RGD1565213_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643726-S	ILMN_61779	RGD1562620_PREDICTED	XM_574971.2	XM_574971.2		499651	109465039	XM_574971.2	RGD1562620_predicted	XP_574971.1	ILMN_1368893	0000870671	S	1102	TGGCATTTTCCAGGGCTACACCTTCTGGCCAGGCTGAGACAGGGCACTGA	2	+	179603586-179603635	2q34	PREDICTED: Rattus norvegicus similar to FLJ16478 protein (predicted) (RGD1562620_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641075	ILMN_295100	RGD1559839_PREDICTED	XR_008987.1	XR_008987.1		499226	109462606	XR_008987.1	RGD1559839_predicted		ILMN_1650985	0003450685	S	122	CTCAGAGTGTCTGGGTAGGTGATTCTGATGAAGATGAGGAGCAAGAGGAA				1q33	PREDICTED: Rattus norvegicus similar to fetal globin inducing factor (predicted) (RGD1559839_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652898-S	ILMN_69600	BRD1_PREDICTED	XM_235552.4	XM_235552.4		315210	109481158	XM_235552.4	Brd1_predicted	XP_235552.3	ILMN_1359869	0004920086	S	4583	AGTGAAGATTTGGACAGTGTGGCCCTCTCATTCCTGCATCACTAGGAGGC	7	-	126987246-126987295	7q34	PREDICTED: Rattus norvegicus bromodomain containing 1 (predicted) (Brd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666158-S	ILMN_61027	LOC499464	XM_574788.1	XM_574788.1		499464	62666158	XM_574788.1	LOC499464	XP_574788.1	ILMN_1349607	0000540373	S	2819	TTGGCTGCTGGGTAACTTAGCCCTTAACCAAGCATATGTGGTTGTTTTTG					PREDICTED: Rattus norvegicus similar to 5330440M15Rik protein (LOC499464), mRNA.					
Rattus norvegicus	RefSeq	GI_62648415	ILMN_275202	RGD1561306_PREDICTED	XM_001068618.1	XM_001068618.1		502904	109474337	XM_001068618.1	RGD1561306_predicted	XP_001068618.1	ILMN_1650660	0003190075	S	232	CCGGCGGAGGAAACTCTAAGCTGCAACAATAACTGCAGCACCACGCAAAG				4q42	PREDICTED: Rattus norvegicus similar to immunoreceptor Ly49si3 (predicted) (RGD1561306_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758717-S	ILMN_53365	NAT1	NM_053853.1	NM_053853.1		116631	16758717	NM_053853.1	Nat1	NP_446305.1	ILMN_1372765	0002030156	S	2101	CGAAGAGGTGGCGATCTTGGGAGCCATATTCATTTACAAACCTCCCAACA				16p14	Rattus norvegicus N-acetyltransferase 1 (arylamine N-acetyltransferase) (Nat1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine [goid 4060] [evidence IEA]; Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence NAS]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Antagonizes ribosome-mediated translation of mRNA into a polypeptide [goid 30371] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_14010886-S	ILMN_271034	CALB1	NM_031984.1	NM_031984.1		83839	14010886	NM_031984.1	Calb1	NP_114190.1	ILMN_1371098	0006940465	S	1650	CCACACTGTTGGTTCAAGCTGGCTTGGTGGCAAGGGAAGGTAGCCAGATG	5	+	30480085-30480112	5q13	Rattus norvegicus calbindin 1 (Calb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The chemical reactions and pathways involving vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 42359] [evidence TAS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]	Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC93326; CaBP28K	MGC93326; CaBP28K
Rattus norvegicus	RefSeq	GI_62658771-S	ILMN_68479	LOC501832	XM_577244.1	XM_577244.1		501832	62658771	XM_577244.1	LOC501832	XP_577244.1	ILMN_1369578	0005290053	S	111	GACGAGGGCGAGAGCCAGGGAGTGAAGGACCGGGCAGGCAGCATCGTCTT					PREDICTED: Rattus norvegicus similar to ARP2/3 complex 16 kDa subunit (p16-ARC) (Actin-related protein 2/3 complex subunit 5) (LOC501832), mRNA.					
Rattus norvegicus	RefSeq	GI_11177871-S	ILMN_295029	GABRA6	NM_021841.1	NM_021841.1		29708	11177871	NM_021841.1	Gabra6	NP_068613.1	ILMN_1368214	0005690373	S	1011	GCAGGCACAGACTGCAGCCAAGCCCCCGGTAGCAAAGTCAAAAACAACTG	10	-	27482441-27482490	10q21	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 6 (Gabra6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The plasma membrane of a cell that bears surface projections such as axons, dendrites, cilia, or flagella, excluding the plasma membrane on cell projections [goid 32809] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released [goid 43083] [evidence IMP]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IMP]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 51932] [evidence IMP]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5237] [evidence IMP]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence TAS]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Combining with benzodiazepines, a class of drugs with hypnotic, anxiolytic, anticonvulsive, amnestic and myorelaxant properties, to initiate a change in cell activity [goid 8503] [evidence IMP]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when GABA has been bound by the channel complex or one of its constituent parts [goid 22851] [evidence IMP]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658427-S	ILMN_265880	RNF6_PREDICTED	XM_001070453.1	XM_001070453.1		304271	109496567	XM_001070453.1	Rnf6_predicted	XP_001070453.1	ILMN_1366750	0002060717	S	2225	GACCTGTTTTAGAATTGGGGGCCACAGACAGCGGGTGAGCGATGGGGTCT				12p11	PREDICTED: Rattus norvegicus ring finger protein (C3H2C3 type) 6 (predicted) (Rnf6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644356-S	ILMN_49182	SDFR2_PREDICTED	XM_227622.4	XM_227622.4		310810	109465493	XM_227622.4	Sdfr2_predicted	XP_227622.4	ILMN_1366338	0002680010	S	1548	ACTGGATCTCCCCAGTCCACAGAAGACCTACGCAATGATGGGGTTTGTGG	2	+	213161129-213161178	2q41	PREDICTED: Rattus norvegicus stromal cell derived factor receptor 2 (predicted) (Sdfr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083686-S	ILMN_299870	CRHR2	NM_022714.1	NM_022714.1		64680	12083686	NM_022714.1	Crhr2	NP_073205.1	ILMN_1357964	0002970139	S	1379	CCGGGCCATGTCCATTCCCACATCGCCCACCAGGATCAGCTTCCACAGCA	4	-	83840020-83840069	4q24	Rattus norvegicus corticotropin releasing hormone receptor 2 (Crhr2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with adrenocorticotropin to initiate a change in cell activity [goid 4978] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with the corticotrophin-releasing factor family of ligands, including the urocortins, to initiate a change in cell activity [goid 15056] [evidence ISS]; Combining with the corticotrophin-releasing factor family of ligands, including the urocortins, to initiate a change in cell activity [goid 15056] [evidence IEA]; Interacting selectively with adrenocorticotropin-releasing hormone [goid 17047] [evidence IDA]; Combining with corticotropin-releasing hormone to initiate a change in cell activity [goid 43404] [evidence IDA]; Interacting selectively with corticotropin-releasing hormone, a polypeptide hormone involved in the stress response. It is released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland [goid 51424] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Crf2r	Crf2r
Rattus norvegicus	RefSeq	GI_62644350-S	ILMN_48940	MG29_PREDICTED	XM_342316.2	XM_342316.2		362018	62644350	XM_342316.2	Mg29_predicted	XP_342317.2	ILMN_1360613	0001690717	S	783	CCCAGCCAGGAGAGTGCAGCAGAACAGGGAGCGGTGGAGAAGCAATTTGA				2q34	PREDICTED: Rattus norvegicus mitsugumin 29 (predicted) (Mg29_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659107-S	ILMN_66987	LOC288748	XM_237883.3	XM_237883.3		288748	62659107	XM_237883.3	LOC288748	XP_237883.3	ILMN_1363825	0003060403	S	321	TTCTCTGGGCTCAACTTCCTGGACAGGCACGCCCCTGCTCACTTTGACGA					PREDICTED: Rattus norvegicus similar to angiopoietin 1 (LOC288748), mRNA.					
Rattus norvegicus	RefSeq	GI_62718376-S	ILMN_295859	LOC690943	XM_001076239.1	XM_001076239.1		690943	109513577	XM_001076239.1	LOC690943	XP_001076239.1	ILMN_1361869	0004070050	S	792	GTGCAAGAGAGCTGCAATTGGACACACCCCAGTAAGAGAGCTTCCTGAAG	Un|NW_047883.1	+	2736077-2736126		PREDICTED: Rattus norvegicus similar to Myosin-9B (Myosin IXb) (Unconventional myosin-9b) (LOC690943), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948453-S	ILMN_276383	SAMM50	NM_001004241.1	NM_001004241.1		300111	51948453	NM_001004241.1	Samm50	NP_001004241.1	ILMN_1356478	0004560132	S	1401	CCTATGGGTGTGCAGCGAGGCGACAGGATTTGTGATGGCGTCCAGTTTGG	7	+	122197784-122197809:122200848-122200871	7q34	Rattus norvegicus sorting and assembly machinery component 50 homolog (S. cerevisiae) (Samm50), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites [goid 19867] [evidence IEA]			MGC94439	MGC94439
Rattus norvegicus	RefSeq	GI_31542925-S	ILMN_266065	GZMB	NM_138517.2	NM_138517.2		171528	31542925	NM_138517.2	Gzmb	NP_612526.2	ILMN_1358992	0003850064	S	1030	GCTTCTGCCACAAGGCTGTGACAACCCAGCTGACATCTGCTAGTTCACCC				15p12	Rattus norvegicus granzyme B (Gzmb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic degradation of lamins during apoptosis, leading to the irreversible breakdown of the nuclear lamina [goid 6922] [evidence ISS];  [goid 8626] [evidence ISS]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]	MGC156565	MGC156565
Rattus norvegicus	RefSeq	GI_47576500-S	ILMN_278810	OLR880	NM_001000055.1	NM_001000055.1		288790	47576500	NM_001000055.1	Olr880	NP_001000055.1	ILMN_1365081	0002350021	S	105	GAGTGTGACTGGGAATCTCACCATTATTACCCTGACACTTTTGGGTCCCC	7	-	2512045-2512094	7q11	Rattus norvegicus olfactory receptor 880 (Olr880), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr880; ratchr7-2512199-2511261_ORF	Olr880; ratchr7-2512199-2511261_ORF
Rattus norvegicus	RefSeq	GI_62649403-S	ILMN_287621	LOC683767	XM_001067412.1	XM_001067412.1		683767	109476984	XM_001067412.1	LOC683767	XP_001067412.1	ILMN_1354673	0002760114	S	1731	CTCAGCTTCTCCTATTTCCTAGTTCTTAGTATCAGGTGCAGGGGTGCCTC					PREDICTED: Rattus norvegicus similar to basic transcription factor 3-like 4 (LOC683767), mRNA.					
Rattus norvegicus	RefSeq	GI_62646400-S	ILMN_283097	SLC9A8	NM_001025281.1	NM_001025281.1		311651	70608091	NM_001025281.1	Slc9a8	NP_001020452.1	ILMN_1360784	0002650494	S	1602	GGATGCCAAGTATCTGAACCCCTTCTTTACACGGCGGCTGACACAGGAGG	3	+	158622871-158622919:158623406-158623406	3q42	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 8 (Slc9a8), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion [goid 51453] [evidence ISS]	Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in) [goid 15386] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_18543352-S	ILMN_276129	SLC5A6	NM_130746.1	NM_130746.1		170551	18543352	NM_130746.1	Slc5a6	NP_570102.1	ILMN_1358092	0001340647	S	2802	CTACCTCTGTTTGTGAGAGGGAGGCTTTGGAGCGCTTGGGTCTCAGCACT	6	+	25312638-25312687	6q14	Rattus norvegicus solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (Slc5a6), mRNA.	The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	The directed movement of biotin into, out of, within or between cells. Biotin is cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid; the (+) enantiomer is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions [goid 15878] [evidence IDA]; The directed movement of pantothenate into, out of, within or between cells. Pantothenate is the anion of pantothenic acid, the amide of beta-alanine and pantoic acid; it is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods [goid 15887] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: multivitamin(out) + Na+(out) = multivitamin(in) + Na+(in). Multivitamins include pantothenate, biotin and lipoate [goid 8523] [evidence IDA]	SMVT	SMVT
Rattus norvegicus	RefSeq	GI_62644457-S	ILMN_277305	DAPP1_PREDICTED	XM_001078162.1	XM_001078162.1		362046	109467704	XM_001078162.1	Dapp1_predicted	XP_001078162.1	ILMN_1354719	0006110370	S	1272	GCTCCAAGCAGCAAGGAAACAGCAGTGCATCAGGAAGTTCGGGCTGTGCT				2q44	PREDICTED: Rattus norvegicus dual adaptor for phosphotyrosine and 3-phosphoinositides 1 (predicted) (Dapp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661448-S	ILMN_65268	LOC498513	XM_579830.1	XM_579830.1		498513	62661448	XM_579830.1	LOC498513	XP_579830.1	ILMN_1350767	0005860736	S	588	ACCCTCGTGGCTGGGTGCCTAACTGGCCCGCAAAACTTTATTTGTAGGTG					PREDICTED: Rattus norvegicus LOC498513 (LOC498513), mRNA.					
Rattus norvegicus	RefSeq	GI_62717824-S	ILMN_50265	LOC367385	XM_578828.1	XM_578828.1		367385	62717824	XM_578828.1	LOC367385	XP_578828.1	ILMN_1365221	0001050494	S	1432	TAAGCCTCTTCATCCCTGACTGGCTGGCAAAGCCCACATCAGCTAAAGCG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC367385), mRNA.					
Rattus norvegicus	RefSeq	GI_40786498-S	ILMN_269267	LCMT1	NM_199405.1	NM_199405.1		361643	40786498	NM_199405.1	Lcmt1	NP_955437.1	ILMN_1366574	0000730082	S	1154	AGTTAAGGGAGTGCCTGGGCGTCCTGAGGGATGGGTAGCTTCATCGCCAT	1	+	182298090-182298139	1q36	Rattus norvegicus leucine carboxyl methyltransferase 1 (Lcmt1), mRNA.		The methylation of the C-terminal amino acid of a protein [goid 6481] [evidence ISS]; The methylation of the C-terminal amino acid of a protein [goid 6481] [evidence IEA]	Catalysis of the transfer of a methyl group to the carbon atom of the C-terminal residue of a protein [goid 3880] [evidence ISS]; Catalysis of the transfer of a methyl group to the carbon atom of the C-terminal residue of a protein [goid 3880] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658584-S	ILMN_58323	LOC498163	XM_573378.1	XM_573378.1		498163	62658584	XM_573378.1	LOC498163	XP_573378.1	ILMN_1373347	0002340609	S	936	GAGGGATCTGAGTCTGAGTGGATGGAGAGAGAGCCTGGGTATGGTCATCA					PREDICTED: Rattus norvegicus similar to family with sequence similarity 55, member C (LOC498163), mRNA.					
Rattus norvegicus	RefSeq	GI_62657448-S	ILMN_64828	LOC287847	XM_213535.3	XM_213535.3		287847	62657448	XM_213535.3	LOC287847	XP_213535.3	ILMN_1361507	0000770070	S	1525	CCCCCTAATGGGAGGGGCTTCTGCCCACCTTTCACAAGGAGTAGCTGCAT				10q32.3	PREDICTED: Rattus norvegicus similar to ataxin 2-binding protein 1 isoform 2 (LOC287847), mRNA.					
Rattus norvegicus	RefSeq	GI_62641389-S	ILMN_280696	BTBD16	NM_001017464.1	NM_001017464.1		361658	62945283	NM_001017464.1	Btbd16	NP_001017464.1	ILMN_1362538	0004920025	S	1614	CTGGTGGACGGCAGGTGGCAGGAGTTCGGGACAAACCAGATCATGCAGAA	1	+	190147462-190147511	1q37	Rattus norvegicus BTB (POZ) domain containing 16 (Btbd16), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576054-S	ILMN_272355	OLR1425	NM_001000010.1	NM_001000010.1		287316	47576054	NM_001000010.1	Olr1425	NP_001000010.1	ILMN_1369997	0002510520	S	602	GCTGTGTGCTCATGATTCTCATTCCTGTGACAGTCATTTCAGGCTCCTAC	10	-	44397365-44397414	10q22	Rattus norvegicus olfactory receptor 1425 (Olr1425), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1425	Olr1425
Rattus norvegicus	RefSeq	GI_16758161-S	ILMN_279215	ARID4B	NM_053421.1	NM_053421.1		84481	16758161	NM_053421.1	Arid4b	NP_445873.1	ILMN_1354974	0006350017	S	4651	TCAGGAACAAACTGTTAGAATGGTTCAAGGCTGTTTCTATGACCTGCCTC	17	-	59334310-59334359	17q12.1	Rattus norvegicus AT rich interactive domain 4B (Rbp1 like) (Arid4b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Bcaa	Bcaa
Rattus norvegicus	RefSeq	GI_6978828-S	ILMN_274678	FANCC	NM_012557.1	NM_012557.1		24361	6978828	NM_012557.1	Fancc	NP_036689.1	ILMN_1358953	0005270369	S	1973	CCCACTCTGATGAAGGTGCTCGTGATGGTGGGAGGATGTCCAGAAGCAGG	17	+	7341236-7341285	17p14	Rattus norvegicus Fanconi anemia, complementation group C (Fancc), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The process of regulating the proliferation and elimination of myeloid cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 2262] [evidence ISS]; The process of regulating the proliferation and elimination of myeloid cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 2262] [evidence IEA]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence ISS]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Facc	Facc
Rattus norvegicus	RefSeq	GI_62649556	ILMN_299719	ZMYND12_PREDICTED	XM_001073920.1	XM_001073920.1		313552	109477126	XM_001073920.1	Zmynd12_predicted	XP_001073920.1	ILMN_1650900	0006220619	S	1042	GGAGGAGCAAGGGGTTATTCAAGAGTTGCTGAGTGCCATCTTGGCTGAGG				5q36	PREDICTED: Rattus norvegicus zinc finger, MYND domain containing 12 (predicted) (Zmynd12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090300-S	ILMN_275742	NUDT5	NM_001007733.1	NM_001007733.1		361274	56090300	NM_001007733.1	Nudt5	NP_001007734.1	ILMN_1369547	0006180484	S	810	GGCCAAGGAGGACACTGGCCATGCTTTGTAAATGAAACCGTGAGGCCTTC	17	-	83497421-83497470	17q12.3	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 5 (Nudt5), mRNA.		The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence ISS]; Catalysis of the reaction: ADP-sugar + H2O = AMP + sugar 1-phosphate [goid 19144] [evidence ISS]; Catalysis of the reaction: ADP-ribose + H2O = AMP + D-ribose 5-phosphate [goid 47631] [evidence IEA]	MGC94209	MGC94209
Rattus norvegicus	RefSeq	GI_62638734-S	ILMN_64070	LOC502263	XM_577724.1	XM_577724.1		502263	62638734	XM_577724.1	LOC502263	XP_577724.1	ILMN_1359663	0000050671	S	2449	AGAATCTCCCCCCAGAAATGAGCCACAAGGAGAGTCCAGAGAACAAGTAG				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502263), mRNA.					
Rattus norvegicus	RefSeq	GI_47576546-S	ILMN_271118	OLR1638	NM_001000834.1	NM_001000834.1		405123	47576546	NM_001000834.1	Olr1638	NP_001000834.1	ILMN_1356956	0006510672	S	886	GATGTGAAGGAGGCTTTAAGGAGGGTTTGGGGCTGGAAATCAATGCGATG	15	-	27476084-27476133	15p14	Rattus norvegicus olfactory receptor 1638 (Olr1638), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1638	Olr1638
Rattus norvegicus	RefSeq	GI_16758197	ILMN_53731	CLDN11	NM_053457.2	NM_053457.2		84588	61889102	NM_053457.2	Cldn11	NP_445909.2	ILMN_1650120	0002470039	S	643	ACCATCGTGAGCTTTGGCTACTCGCTGTATGCGGGCTGGATCGGTGCTGT	2	-	116627582-116627631	2q24	Rattus norvegicus claudin 11 (Cldn11), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence TAS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence IEA]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process by which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal [goid 8366] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647840-S	ILMN_280081	LOC315205	XR_009090.1	XR_009090.1		315205	109473935	XR_009090.1	LOC315205		ILMN_1369736	0005220309	S	1035	CAGGGTGGTCAACCTCATGTCCTACATGGTCTCCAAAAAGTAAAACCCTG				4q34	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC315205), mRNA.					
Rattus norvegicus	RefSeq	GI_34869436	ILMN_285274	RGD1564585_PREDICTED	XR_007480.1	XR_007480.1		303834	109494614	XR_007480.1	RGD1564585_predicted		ILMN_1650071	0000630128	S	84	GACTGGACTCAAGAGGGCAACTGGAGATGGAGTGGCTATGGGAAGCTGCT				11q23	PREDICTED: Rattus norvegicus similar to golli-interacting protein (predicted) (RGD1564585_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643070-S	ILMN_52694	LOC499550	XM_574875.1	XM_574875.1		499550	62643070	XM_574875.1	LOC499550	XP_574875.1	ILMN_1352922	0006350072	S	383	GGCTCTGTTTGCAGCAGATATTGGTAGTGATGAGGAAGACGCACAGTGCC				2q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21986 (LOC499550), mRNA.					
Rattus norvegicus	RefSeq	GI_27663761-S	ILMN_70035	MOV10L1_PREDICTED	XM_217015.4	XM_217015.4		300141	109481168	XM_217015.4	Mov10l1_predicted	XP_217015.4	ILMN_2039191	0000270437	S	517	CCGTGCAAGGGAGACTGGGTAGAGGCTGAATATTGGATCAGGCCAGGGAC	7	+	127302973-127303022	7q34	PREDICTED: Rattus norvegicus Moloney leukemia virus 10-like 1 (predicted) (Mov10l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078444-S	ILMN_295748	CNOT6	NM_001013856.1	NM_001013856.1		287249	62078444	NM_001013856.1	Cnot6	NP_001013878.1	ILMN_1357809	0004200102	S	1774	CCTCAGCTGAATACTTTAGCCATCCTGGGACCTCTGGACCACCATTGGCT	10	-	35141204-35141253	10q22	Rattus norvegicus CCR4-NOT transcription complex, subunit 6 (Cnot6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	CCR4; Cnot6	CCR4; Cnot6
Rattus norvegicus	RefSeq	GI_56799397-S	ILMN_274680	AK3L1	NM_017135.2	NM_017135.2		29223	56799397	NM_017135.2	Ak3l1	NP_058831.1	ILMN_1375179	0002690091	S	3565	AGCTGCCTCAGGGCACTCCTCGGTTTGACCATTCTGTACGTGGTTGGGTG	5	+	122122171-122122220	5q33	Rattus norvegicus adenylate kinase 3-like 1 (Ak3l1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93541; Ak4; Ak3l2	MGC93541; Ak4; Ak3l2
Rattus norvegicus	RefSeq	GI_62640833-S	ILMN_56552	LOC499196	XM_579933.1	XM_579933.1		499196	62640833	XM_579933.1	LOC499196	XP_579933.1	ILMN_1367348	0004070040	S	913	GTTGAGCCAACTCCCAGAGGGTCTTTCCCACTGAATGGGTCTTCCAGCTG					PREDICTED: Rattus norvegicus LOC499196 (LOC499196), mRNA.					
Rattus norvegicus	RefSeq	GI_62660563-S	ILMN_269305	RGD1562646_PREDICTED	XM_001058724.1	XM_001058724.1		305392	109500709	XM_001058724.1	RGD1562646_predicted	XP_001058724.1	ILMN_1370632	0000630711	S	2838	AGCGCCAGTTTCATCTAAGACCAACAGGAGATGCCAGACTGCTGGGCCTG				14q21	PREDICTED: Rattus norvegicus similar to chromosome condensation protein G (predicted) (RGD1562646_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254737-S	ILMN_289786	H3F3B	NM_053985.2	NM_053985.2		117056	40254737	NM_053985.2	H3f3b	NP_446437.1	ILMN_1349008	0004060600	S	1233	GTTCACTAACCCCTGACCCTCTGGCTGGTAACACAAAACACTAACGGGGA	10	-	106130690-106130739	10q32.3	Rattus norvegicus H3 histone, family 3B (H3f3b), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	H3.3B; MGC105794	H3.3B; MGC105794
Rattus norvegicus	RefSeq	GI_13928785-S	ILMN_298108	PTP4A1	NM_031579.1	NM_031579.1		29463	13928785	NM_031579.1	Ptp4a1	NP_113767.1	ILMN_1375203	0004120609	S	1747	TGTTTGCACTCGGGTGCAACCTGACAGGGAGGGCCTGAACAAGAAAGGAG	9	-	29618125-29618174	9q21	Rattus norvegicus protein tyrosine phosphatase 4a1 (Ptp4a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC93357	MGC93357
Rattus norvegicus	RefSeq	GI_62649239-S	ILMN_270345	RGD1564097_PREDICTED	XR_007593.1	XR_007593.1		366418	109476781	XR_007593.1	RGD1564097_predicted		ILMN_1366932	0002630451	S	645	AGTCTAAGATCAGGGAAGTACGAAATCGCCAGGAAGAGCACCTCTAGGCC				5q33	PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (predicted) (RGD1564097_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9910339-S	ILMN_299917	ADAP2	NM_020101.1	NM_020101.1		56826	9910339	NM_020101.1	Adap2	NP_064486.1	ILMN_1354755	0005890465	S	1448	GGTGATGCGTGCAAGTTGAGAGGCAGGAATGCCATGAGCCCAGTGCCAAC	10	+	68390063-68390112	10q26	Rattus norvegicus ArfGAP with dual PH domains 2 (Adap2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Interacting selectively with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 5545] [evidence IMP]; Interacting selectively with phosphatidylinositol-4,5-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 5546] [evidence IDA]; Interacting selectively with phosphatidylinositol-3,4,5-triphosphate, the triphosphorylated derivative of phosphatidylinositol [goid 5547] [evidence ISS]; Interacting selectively with phosphatidylinositol-3,4,5-triphosphate, the triphosphorylated derivative of phosphatidylinositol [goid 5547] [evidence IDA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with phosphatidylinositol-3,4-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 43325] [evidence IDA]; Interacting selectively with inositol 1,3,4,5 tetrakisphosphate [goid 43533] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718221-S	ILMN_48947	LOC363351	XM_343687.2	XM_343687.2		363351	62718221	XM_343687.2	LOC363351	XP_343688.2	ILMN_1352403	0006110411	S	709	CTTTTGCGGGTGTTTGCCAACTACTAATTGATGTTGCCCCCATGCATTGG					PREDICTED: Rattus norvegicus hypothetical LOC363351 (LOC363351), mRNA.					
Rattus norvegicus	RefSeq	GI_62653515-S	ILMN_56862	LOC363046	XM_343374.2	XM_343374.2		363046	62653515	XM_343374.2	LOC363046	XP_343375.2	ILMN_1372383	0001690309	S	636	CGGTTAGCACTGATCAGAGAGGCCATTAATGTGCTTTTCCCACAGAGAGT					PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC363046), mRNA.					
Rattus norvegicus	RefSeq	GI_62664483-S	ILMN_60197	ADAMTS19_PREDICTED	XM_341619.3	XM_341619.3		361332	109506661	XM_341619.3	Adamts19_predicted	XP_341620.3	ILMN_1362126	0006550717	S	4307	ACCAGCGGTGCTGTGAGACATGCAGGGACTTCTATGCCCAAAAGCTACGG	18	+	54846989-54847038	18q12.1	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19 (predicted) (Adamts19_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.16545	ILMN_160993	RN.16545	Rn.16545		Rn.16545		21988526	BQ780054			ILMN_1530198	0004850091	S	55	ATTAAGTTAGAAACTAATAAAAGTAACACCCACTGCTCAGGCAAGCACCA					UI-R-FF0-cow-n-11-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cow-n-11-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62643937-S	ILMN_49761	LOC365832	XM_345226.2	XM_345226.2		365832	62643937	XM_345226.2	LOC365832	XP_345227.2	ILMN_1354507	0001340717	S	686	ACAGAGGGCCCTGACAATGCCACCATTCAGCTCTCCAGGAACTGACTTGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC365832), mRNA.					
Rattus norvegicus	RefSeq	GI_62666327-S	ILMN_69111	LOC361865	XM_342159.2	XM_342159.2		361865	62666327	XM_342159.2	LOC361865	XP_342160.2	ILMN_1371809	0003120139	S	7	TAAGAACACCGTGGAAAGGGGGGACGGCCGAGCAGGATGCCCAAAGGAAA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC361865), mRNA.					
Rattus norvegicus	RefSeq	GI_62654584-S	ILMN_64981	LOC503236	XM_578766.1	XM_578766.1		503236	62654584	XM_578766.1	LOC503236	XP_578766.1	ILMN_1353189	0003940138	S	367	GACCGAGGGTGTGGCTACTTCCGCTTTCTTTTGGTCTGGCTTCCTCTTGG					PREDICTED: Rattus norvegicus LOC503236 (LOC503236), mRNA.					
Rattus norvegicus	RefSeq	GI_62649973-S	ILMN_57127	LOC313668	XM_233612.3	XM_233612.3		313668	62649973	XM_233612.3	LOC313668	XP_233612.3	ILMN_1350060	0004210131	S	2980	GGCATGTCCGCCTTTTGCCTGTTCTACACCAAAGATGACGCAGGGTCCCA				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700027M01 (predicted) (LOC313668), mRNA.					
Rattus norvegicus	RefSeq	GI_25282414-S	ILMN_282133	FGL1	NM_172010.1	NM_172010.1		246186	25282414	NM_172010.1	Fgl1	NP_742007.1	ILMN_1374903	0004070722	S	809	GCACACGCGACAGAGACAACGACAACTACAACGGGAACTGTGCTGAGGAG	16	+	54460864-54460913	16q12.1	Rattus norvegicus fibrinogen-like 1 (Fgl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]	MGC108569; Lfire1; Frep1	MGC108569; Lfire1; Frep1
Rattus norvegicus	RefSeq	GI_62647259-S	ILMN_58392	HNRPA2B1_PREDICTED	XM_342684.3	XM_342684.3		362361	109472041	XM_342684.3	Hnrpa2b1_predicted	XP_342685.2	ILMN_1348850	0004730471	S	962	GGAGATTCTCGAGGTGGCGGTGGCAATTTTGGACCAGGACCAGGAAGCAA	4	-	79702829-79702878	4q24	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein A2/B1 (predicted) (Hnrpa2b1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653647-S	ILMN_63653	LOC500995	XM_576409.1	XM_576409.1		500995	62653647	XM_576409.1	LOC500995	XP_576409.1	ILMN_1368422	0000060017	S	468	TGCATACCTGTGTTCAGTGCTAACGTCTGGGCCACCGCCACATCCAAAAG				8q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110032A03 (LOC500995), mRNA.					
Rattus norvegicus	RefSeq	GI_62664688-S	ILMN_283847	RGD1561935_PREDICTED	XM_577638.1	XM_577638.1		502180	62664688	XM_577638.1	RGD1561935_predicted	XP_577638.1	ILMN_1367261	0004730746	S	129	GGGAAGATCGTTGACCAGGAGCAGTCAAGGACAGGAGCACACAGACAAGG	18	+	76848421-76848470	18q12.3	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1561935_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036642-S	ILMN_280763	LDHC	NM_017266.2	NM_017266.2		29634	51036642	NM_017266.2	Ldhc	NP_058962.2	ILMN_1356058	0002810494	S	964	CTTCCTCAGTATCCCGTGTGTCTTGGGACAAAGTGGCATCACAGACCTTG	1	+	97435068-97435117	1q22	Rattus norvegicus lactate dehydrogenase C (Ldhc), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	 [goid 19642] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA];  [goid 19642] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Ldh3	Ldh3
Rattus norvegicus	RefSeq	GI_62662595-S	ILMN_64305	HMGB2	XM_573903.1	XM_573903.1		29395	62662595	XM_573903.1	Hmgb2	XP_573903.1	ILMN_1372675	0002900053	S	0	AATTCGGCATTCTCGCCGGAGCTTGGGGAAGGAAGTCTCTCTGTGGAGGT				16p11	PREDICTED: Rattus norvegicus high mobility group box 2 (Hmgb2), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The ligation by DNA ligase of DNA strands. Ligation occurs after polymerase action to fill the gap left by the action of endonucleases during base-excision repair [goid 6288] [evidence ISS]; The ligation by DNA ligase of DNA strands. Ligation occurs after polymerase action to fill the gap left by the action of endonucleases during base-excision repair [goid 6288] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence TAS]; Interacting selectively with a lipid [goid 8289] [evidence IDA]; The function of causing local conformational micropolymorphism of DNA in which the original B-DNA structure is only distorted but not extensively modified [goid 8301] [evidence ISS]; The function of causing local conformational micropolymorphism of DNA in which the original B-DNA structure is only distorted but not extensively modified [goid 8301] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658833-S	ILMN_50550	LOC304462	XM_222140.3	XM_222140.3		304462	62658833	XM_222140.3	LOC304462	XP_222140.1	ILMN_1369919	0001780156	S	170	CACTCAAAAGTTTCGAACTGACAGGAGACGGCTCTTCCAGAACGACGGAG					PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, Brigham & Womens Genetics 0834 expressed (predicted) (LOC304462), mRNA.					
Rattus norvegicus	RefSeq	GI_62654397-S	ILMN_54915	LOC501063	XM_580157.1	XM_580157.1		501063	62654397	XM_580157.1	LOC501063	XP_580157.1	ILMN_1356989	0001090427	S	196	CAGGAAGGACAGGTGGAGGAACCTGAAGCATCTGGCCCAAGCTGGTCATG					PREDICTED: Rattus norvegicus LOC501063 (LOC501063), mRNA.					
Rattus norvegicus	RefSeq	GI_62644597-S	ILMN_286630	RGD1564087_PREDICTED	XR_009360.1	XR_009360.1		502602	109467794	XR_009360.1	RGD1564087_predicted		ILMN_1363443	0004780452	S	390	GCGACCTACACATCCAATCTGCCTGGGGCTGGCTCTTAACTTTTCTGCAC				2q45	PREDICTED: Rattus norvegicus similar to 14-3-3 protein tau (14-3-3 protein theta) (predicted) (RGD1564087_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476131-S	ILMN_267680	SERP1	NM_030835.2	NM_030835.2		80881	42476131	NM_030835.2	Serp1	NP_110462.1	ILMN_1354484	0000670132	S	1985	GCTATGGGTCTGCAGGGGCATGACTGATGGTTGTCTGCCTCTTTTCACCC	2	-	147866464-147866513	2q31	Rattus norvegicus stress-associated endoplasmic reticulum protein 1 (Serp1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IDA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The inherent decline of a multicellular organism over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 10259] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism [goid 46622] [evidence ISS]; The process by which the anatomical structures of muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 48644] [evidence ISS]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence ISS]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]		SERP1	SERP1
Rattus norvegicus	RefSeq	GI_62639788-S	ILMN_278286	ZDHHC13	NM_001039037.1	NM_001039037.1		365252	84781736	NM_001039037.1	Zdhhc13	NP_001034126.1	ILMN_1352178	0001410408	S	1996	TCAGCTCCCCACAGTCAAAGTCTCTGGGAATGAAGTCCTCAGCAAGAGTG	1	+	98599172-98599221	1q22	Rattus norvegicus zinc finger, DHHC domain containing 13 (Zdhhc13), mRNA.		Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156470	MGC156470
Rattus norvegicus	RefSeq	GI_34881666	ILMN_60031	RGD1565430_PREDICTED	XM_579034.2	XM_579034.2		367928	109511184	XM_579034.2	RGD1565430_predicted	XP_579034.2	ILMN_1650832	0005220014	S	323	TTGACGAGATAAAAGAACAACACCCAAACTGGACTGTGGCGCAGGTGGCC	X	+	133914640-133914689	Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1565430_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667397-S	ILMN_60031	RGD1565430_PREDICTED	XM_579034.2	XM_579034.2		367928	109511184	XM_579034.2	RGD1565430_predicted	XP_579034.2	ILMN_1370254	0006110026	S	3	GGGAAAAGTCAGCAAAGTAAGACCGAAAGTGAACGTCTCTCCTTATGTCC	X	+	133914320-133914369	Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1565430_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646858-S	ILMN_61960	LOC500028	XM_575383.2	XM_575383.2		500028	109471754	XM_575383.2	LOC500028	XP_575383.1	ILMN_1366284	0004560035	S	562	GAGCATGCGCATTTGGAAAAACCAAGCCTCACTTGGATTCTGGAACAGAC	4	-	34958231-34958280	4q21	PREDICTED: Rattus norvegicus hypothetical protein LOC500028 (LOC500028), mRNA.					
Rattus norvegicus	RefSeq	GI_18158456-S	ILMN_291692	SLCO2B1	NM_080786.1	NM_080786.1		140860	18158456	NM_080786.1	Slco2b1	NP_542964.1	ILMN_1358836	0006380253	S	3346	GGGACCAGGTATTTGTCCTCGGTGCAGAAGAAGGGACTACAGAAGCTCTC	1	-	156992886-156992935	1q32	Rattus norvegicus solute carrier organic anion transporter family, member 2b1 (Slco2b1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other, in a sodium independent manner [goid 15347] [evidence ISS]	moat1; Slc21a9	moat1; Slc21a9
Rattus norvegicus	RefSeq	GI_62657878-S	ILMN_267732	RGD1564361_PREDICTED	XM_001066912.1	XM_001066912.1		498081	109494365	XM_001066912.1	RGD1564361_predicted	XP_001066912.1	ILMN_1374478	0002340601	S	1456	TCCAGTGGGGATGGAGAAGAGCTGGAACGACTTACCAAACCCAAGAGCGA				11q21	PREDICTED: Rattus norvegicus similar to solute carrier family 35, member A5 (predicted) (RGD1564361_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651189-S	ILMN_51446	LOC500712	XM_576095.1	XM_576095.1		500712	62651189	XM_576095.1	LOC500712	XP_576095.1	ILMN_1361383	0002320465	S	772	GTCAGCATCACTGCTGGGGACAAGATAAGAGGTACACAGTAAAGAGCGGC					PREDICTED: Rattus norvegicus similar to Ab1-233 (LOC500712), mRNA.		The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time [goid 3964] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981077-S	ILMN_275931	IGF2R	NM_012756.1	NM_012756.1		25151	6981077	NM_012756.1	Igf2r	NP_036888.1	ILMN_1349413	0005900148	S	8466	CGTGAAATACGGTGGGCCAGTGTTGTGTGTGGGCTTGTGCAGGGCAGTGT	1	+	42341323-42341372	1q11	Rattus norvegicus insulin-like growth factor 2 receptor (Igf2r), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence IEA]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence TAS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide [goid 1965] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 5010] [evidence TAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IDA]; Interacting selectively with insulin-like growth factor II [goid 31995] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_47577290-S	ILMN_267400	OLR404	NM_001000382.1	NM_001000382.1		296667	47577290	NM_001000382.1	Olr404	NP_001000382.1	ILMN_1362477	0000460309	S	804	TGACAAGGATGCCATTGTGGCTGTGATGTACACTGTGGTTACGCCCATGC	3	+	16108979-16109028	3p11	Rattus norvegicus olfactory receptor 404 (Olr404), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-16004548-16005486_ORF; Olr404	ratchr3-16004548-16005486_ORF; Olr404
Rattus norvegicus	RefSeq	GI_16758769-S	ILMN_67716	F2RL1	NM_053897.2	NM_053897.2		116677	71534284	NM_053897.2	F2rl1	NP_446349.1	ILMN_1352565	0005910050	S	1129	TCGAAAGATTTCAGGGACCAGGCCAGAAACGCGCTCCTCTGCCGAAGCGT	2	-	25887977-25888026	2q12	Rattus norvegicus coagulation factor II (thrombin) receptor-like 1 (F2rl1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The regulated release of proteins from a cell or group of cells [goid 9306] [evidence TAS]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with thrombin to initiate a change in cell activity [goid 15057] [evidence IEA]	Par-2; Par2	Par-2; Par2
Rattus norvegicus	RefSeq	GI_31342521-S	ILMN_284274	SLA	NM_178097.2	NM_178097.2		338477	31342521	NM_178097.2	Sla	NP_835198.1	ILMN_1368884	0006520164	S	1296	CCTCTACCTGGAGCAAAACTACCTTTATCGGTCCAATGAGACCTTTAGGG	7	-	104153296-104153345	7q33	Rattus norvegicus src-like adaptor (Sla), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Slap1	Slap1
Rattus norvegicus	RefSeq	GI_38454195-S	ILMN_282743	VCSA2	NM_198729.1	NM_198729.1		289526	38454195	NM_198729.1	Vcsa2	NP_942024.1	ILMN_1368292	0005220347	S	122	CCTTATAGGCTGCTTCCAGTCAGGTGAGGGTGTCAGAGGCCCAAGAAGAC	14	-	21438932-21438963:21442956-21442973	14p21	Rattus norvegicus variable coding sequence A2 (Vcsa2), mRNA.				VCS-alpha2	VCS-alpha2
Rattus norvegicus	RefSeq	GI_62659074-S	ILMN_64743	GALNT9_PREDICTED	XM_222253.4	XM_222253.4		304571	109496205	XM_222253.4	Galnt9_predicted	XP_222253.3	ILMN_1356558	0007000273	S	2810	CTGCCATTTCTACAGCAGGCATCCGTCAAATGATCCCCCCAACCCCACAC	12	-	46195038-46195087	12q16	PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (predicted) (Galnt9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656339-S	ILMN_301738	EIF5A	NM_001033681.1	NM_001033681.1		287444	76096303	NM_001033681.1	Eif5a	NP_001028853.1	ILMN_1365614	0002970692	S	570	CAAAATAACTGGCTTCCAGGGTGGCGGTGGTGGCAGCAGTGATCCATGAG	10	-	56760868-56760899:56760998-56761008:56761009-56761015	10q24	Rattus norvegicus eukaryotic translation initiation factor 5A (Eif5a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Stacks of endoplasmic reticulum (ER) membranes containing a high density of nuclear pores, thought to form from excess nuclear membrane components, that have been described in a number of different cells. Annulate lamellar membranes are continuous with and embedded within the ER [goid 5642] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The posttranslational modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine [goid 8612] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of translational initiation [goid 45948] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Interacting selectively with the U6 small nuclear RNA (U6 snRNA) [goid 17070] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	MGC124873	MGC124873
Rattus norvegicus	Unigene	Rn.35673	ILMN_161127	RN.35673	Rn.35673		Rn.35673		20420321	BQ203856			ILMN_1530192	0000730204	S	15	TTTTAGGAATGACAAAGTTTAATTTGGGGGCTCACATTTCTAAAGGCTTA					UI-R-DN1-cmu-l-09-0-UI.s1 UI-R-DN1 Rattus norvegicus cDNA clone UI-R-DN1-cmu-l-09-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_34875166	ILMN_278147	ARL11	NM_001013433.1	NM_001013433.1		364396	61740632	NM_001013433.1	Arl11	NP_001013451.1	ILMN_1650220	0000670438	S	401	ACATTGGGGGACAGACCCAGCTCAGGGCTACGTGGAAGGACTACCTGGAA	15	+	40459872-40459921	15p12	Rattus norvegicus ADP-ribosylation factor-like 11 (Arl11), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC108833	MGC108833
Rattus norvegicus	RefSeq	GI_62650826-S	ILMN_275052	TRMT5_PREDICTED	XM_001080710.1	XM_001080710.1		362754	109479521	XM_001080710.1	Trmt5_predicted	XP_001080710.1	ILMN_1367913	0000070100	S	1447	GTGCATCACCTTCCAGATTCCCACTGCTACACTCTACAGGGACCAAGCCC				6q24	PREDICTED: Rattus norvegicus TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) (predicted) (Trmt5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928695-S	ILMN_278090	JAK2	NM_031514.1	NM_031514.1		24514	13928695	NM_031514.1	Jak2	NP_113702.1	ILMN_1361170	0006510025	S	3506	GGGACCTTTCCCTTCGGGTGGATCAAATCCGGGACAGTATGGCTGCATGA	1	+	232974538-232974587	1q52	Rattus norvegicus Janus kinase 2 (Jak2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IDA]; The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein [goid 7260] [evidence ISS]; The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence ISS]; The transport of dimerized STAT (Signal Transducers and Activators of Transcription) proteins into the nucleus following activation by members of the janus activated kinase (JAK) family of tyrosine kinases [goid 7262] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The activation, by oxidative stress, of any of the steps required for cell death by apoptosis [goid 8631] [evidence IMP]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IDA]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell adhesion to another cell [goid 22408] [evidence IMP]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; The regrowth of axons following their loss or damage [goid 31103] [evidence IMP]; Any series of molecular signals generated as a consequence of a mineralocorticoid binding to its receptor [goid 31959] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IMP]; Any process that activates or increases the activity of a phosphoprotein phosphatase [goid 32516] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production [goid 32731] [evidence IMP]; Any process that activates or increases the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane [goid 33160] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroperoxide stimulus. Hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH [goid 33194] [evidence IMP]; The process of introducing a phosphate group to a tyrosine residue of a Stat3 protein [goid 42503] [evidence IMP]; The process of introducing a phosphate group to a tyrosine residue of a Stat1 protein [goid 42508] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43392] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activation [goid 50867] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA];  [goid 4718] [evidence ISS];  [goid 4718] [evidence IMP];  [goid 4718] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with the growth hormone receptor [goid 5131] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an acetylcholine receptor [goid 33130] [evidence IPI]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence IEA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IPI]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence IPI]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_61556869-S	ILMN_275354	DNAJB4	NM_001013076.1	NM_001013076.1		295549	61556869	NM_001013076.1	Dnajb4	NP_001013094.1	ILMN_1371000	0003840670	S	1243	GACATCGTGAAGCCTGGGATGAGGAGGAGAATTATTGGCTATGGGCTGCC				2q45	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 4 (Dnajb4), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664481-A	ILMN_267600	ISOC1	XM_001060492.1	XM_001060492.1		364879	109507367	XM_001060492.1	Isoc1	XP_001060492.1	ILMN_1376801	0002370717	S	2951	CCCAGGATCTAGGGATTAGGATGTGGGTGTCTTCACACAGTCATCAGCTA				18q12.1	PREDICTED: Rattus norvegicus isochorismatase domain containing 1 (Isoc1), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639090-S	ILMN_268571	IRF2BP1_PREDICTED	XM_001075292.1	XM_001075292.1		308404	109461342	XM_001075292.1	Irf2bp1_predicted	XP_001075292.1	ILMN_1366898	0001690184	S	2387	GCTTGGCTTTCCTGCTGTTGGTAGTTGGGGGAAGAGGTACCCCGCTTGTC				1q21	PREDICTED: Rattus norvegicus interferon regulatory factor 2 binding protein 1 (predicted) (Irf2bp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717848-S	ILMN_51917	LOC501236	XM_580177.1	XM_580177.1		501236	62717848	XM_580177.1	LOC501236	XP_580177.1	ILMN_1353131	0004070452	S	553	GGGCAAGGCCCATGGACAAAGAGATCGCACCTGATGGTCACAATCTTAAA					PREDICTED: Rattus norvegicus LOC501236 (LOC501236), mRNA.					
Rattus norvegicus	RefSeq	GI_55742647-S	ILMN_300442	HMGN3	NM_001007020.1	NM_001007020.1		113990	55742647	NM_001007020.1	Hmgn3	NP_001007021.1	ILMN_1362726	0000840605	S	726	GCCTTGTCTGTCCGCCCAGAGTTGACGTGTGTTTCCAAGTAGACCGAAGC	8	-	88169001-88169050	8q31	Rattus norvegicus high mobility group nucleosomal binding domain 3 (Hmgn3), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665116-S	ILMN_55317	LOC498935	XM_574221.1	XM_574221.1		498935	62665116	XM_574221.1	LOC498935	XP_574221.1	ILMN_1354968	0005690541	S	270	CCACCAGAATTCAAGAGATGGAAGAGAGAATTTCGGGAGCAGAAGATTCC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498935), mRNA.					
Rattus norvegicus	RefSeq	GI_62655020	ILMN_51362	LOC501136	XM_576556.1	XM_576556.1		501136	62655020	XM_576556.1	LOC501136	XP_576556.1	ILMN_1650487	0002650110	S	225	GAGGATGGAAATAGAAGCAATCAAGAAAGAACACAGGGAAACAGCCCTGG					PREDICTED: Rattus norvegicus similar to ORF1 (LOC501136), mRNA.					
Rattus norvegicus	RefSeq	GI_62641731-S	ILMN_276144	RGD1310680_PREDICTED	XM_001072726.1	XM_001072726.1		309158	109463363	XM_001072726.1	RGD1310680_predicted	XP_001072726.1	ILMN_1373153	0006130053	S	1803	AGCTTCCAGAAACACTGGGATGGGGAGGAGACCTGGGCACAACTGTCTGC				1q43	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33486 (predicted) (RGD1310680_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507158-S	ILMN_298589	SYN1	NM_019133.1	NM_019133.1		24949	9507158	NM_019133.1	Syn1	NP_062006.1	ILMN_1373112	0006020671	S	2060	CAAATCCCAGTCTCTGACCAATGCCTTCAACCTTCCAGAGCCAGCCCCGC				Xq12	Rattus norvegicus synapsin I (Syn1), transcript variant a, mRNA.	A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [pmid 11867766] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 17003121] [evidence IDA]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence TAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11867766] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929057-S	ILMN_298443	ALCAM	NM_031753.1	NM_031753.1		79559	13929057	NM_031753.1	Alcam	NP_113941.1	ILMN_1370154	0002350484	S	2532	ATGTGCCAACGGGTTCCCCGAAGCGGGTCACAAACACATACGGCAACACC	11	+	49629735-49629784	11q21	Rattus norvegicus activated leukocyte cell adhesion molecule (Alcam), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55926143-S	ILMN_272222	ANP32B	NM_131911.2	NM_131911.2		170724	55926143	NM_131911.2	Anp32b	NP_571986.1	ILMN_1363755	0003710097	S	1082	TACAAGCCCCAGGACACCCCCACCCAAAGAGCCAAAGAATAGTTCCCGCG	5	+	63057982-63058031	5q22	Rattus norvegicus acidic (leucine-rich) nuclear phosphoprotein 32 family, member B (Anp32b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Progression through S phase, the part of the mitotic cell cycle during which DNA synthesis takes place [goid 84] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	PAL31	PAL31
Rattus norvegicus	RefSeq	GI_62661780-S	ILMN_60925	LOC498553	XM_573829.1	XM_573829.1		498553	62661780	XM_573829.1	LOC498553	XP_573829.1	ILMN_1371816	0005570546	S	895	AGGATAATAGGTATAGAAGAGAGTGAAGACTCCCAGCACAAAGGACCAGT					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC498553), mRNA.					
Rattus norvegicus	RefSeq	GI_62662567-S	ILMN_282073	LOC498621	XM_001071367.1	XM_001071367.1		498621	109504051	XM_001071367.1	LOC498621	XP_001071367.1	ILMN_1355112	0003450524	S	1733	AGTCATTCCCCTACACTGGGGGTCAAACCTTGGCAGGACCAGGGGCTTCT					PREDICTED: Rattus norvegicus similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38) (LOC498621), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660836-S	ILMN_267441	RGD1562297_PREDICTED	XM_001058005.1	XM_001058005.1		498419	109501047	XM_001058005.1	RGD1562297_predicted	XP_001058005.1	ILMN_1356453	0004670731	S	613	GCGTGGCCGTTCTCAGATTCTACGTACTTAACCAAGAGGTTCCCCCATCC					PREDICTED: Rattus norvegicus RGD1562297 (predicted) (RGD1562297_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645897-S	ILMN_273440	CENPB_PREDICTED	XM_001081194.1	XM_001081194.1		362217	109470841	XM_001081194.1	Cenpb_predicted	XP_001081194.1	ILMN_1364444	0006100040	S	2496	AGTGACAGCAGGCACCTCCAATCTGGGTAGCTGCAGGCCTTTGTGCCTCA				3q36	PREDICTED: Rattus norvegicus centromere autoantigen B (predicted) (Cenpb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662429-S	ILMN_271932	RGD1305557	XM_001067996.1	XM_001067996.1		306349	109503955	XM_001067996.1	RGD1305557	XP_001067996.1	ILMN_1366585	0001450132	S	1168	TTCCCTTGAGACAAACGAACCTAAGTGGCAGGGAGAAGGGGATCTGGCCT				16p14	PREDICTED: Rattus norvegicus similar to Brain specific membrane-anchored protein precursor (RGD1305557), mRNA.					
Rattus norvegicus	RefSeq	GI_62663737-S	ILMN_65800	LOC307056	XM_225479.3	XM_225479.3		307056	62663737	XM_225479.3	LOC307056	XP_225479.3	ILMN_1374714	0002450273	S	3094	CTGTCAGAAAGCCCTGAACCCAGGGAACTTCACATGGTTAGAAGCACCAG				17q12.1	PREDICTED: Rattus norvegicus similar to Anillin (LOC307056), mRNA.					
Rattus norvegicus	RefSeq	GI_62655734-S	ILMN_284142	ZFP263_PREDICTED	XM_001079422.1	XM_001079422.1		287076	109489733	XM_001079422.1	Zfp263_predicted	XP_001079422.1	ILMN_1375093	0001240377	S	2260	AGCTTCTCTCGGAGCTCACGCCTCACAAGTCATCAAAGAACGCACACTGG				10q12	PREDICTED: Rattus norvegicus zinc finger protein 263 (predicted) (Zfp263_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657622-S	ILMN_59463	LOC498059	XM_579777.1	XM_579777.1		498059	62657622	XM_579777.1	LOC498059	XP_579777.1	ILMN_1370646	0000940162	S	553	CCAAAGGATTGTAGCTCAGAGGATGAAGAGCGGAGGACAGGAAGAGAGCC					PREDICTED: Rattus norvegicus LOC498059 (LOC498059), mRNA.					
Rattus norvegicus	RefSeq	GI_27545403-S	ILMN_283112	LOC286982	NM_173316.1	NM_173316.1		286982	27545403	NM_173316.1	LOC286982	NP_775438.1	ILMN_1357124	0003850520	S	3189	CTTGGAGTTGGGGAGGGGTATGGGATGAAGAAGAGTCAGGAGGCAGGTGC	1	+	64883768-64883817	1q12	Rattus norvegicus putative pheromone receptor (Go-VN6) (LOC286982), mRNA.					
Rattus norvegicus	RefSeq	GI_62645119-S	ILMN_270619	PRPF40A_PREDICTED	XM_001056963.1	XM_001056963.1		295607	109469878	XM_001056963.1	Prpf40a_predicted	XP_001056963.1	ILMN_1368913	0006450025	S	3595	GTGCCACCAAACTTTTGAGTAATAGTTGAAATATCCTTGTCGGGGGCGGG				3q12	PREDICTED: Rattus norvegicus pre-mRNA processing factor 40 homolog A (yeast) (predicted) (Prpf40a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653358-S	ILMN_48878	LOC300461	XM_235972.3	XM_235972.3		300461	62653358	XM_235972.3	LOC300461	XP_235972.3	ILMN_1354005	0002320095	S	2135	GCAGCTAGCGGGCGCGACTATGCCAAGATGGTCCTGCAGGCGCGGAGCAA				8q13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32949 (LOC300461), mRNA.					
Rattus norvegicus	RefSeq	GI_34854528-S	ILMN_270165	ZFP110	NM_001024775.1	NM_001024775.1		308362	67078467	NM_001024775.1	Zfp110	NP_001019946.1	ILMN_1371117	0004920112	S	2429	GACCGCTCAGCCATCTCTCAACACCTGAGGACTCACACTGGAGCTAAGCC	1	+	72749863-72749912	1q21	Rattus norvegicus zinc finger protein 110 (Zfp110), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657976-S	ILMN_271606	RGD1563276_PREDICTED	XM_001064622.1	XM_001064622.1		498091	109494416	XM_001064622.1	RGD1563276_predicted	XP_001064622.1	ILMN_1373691	0004150132	S	2769	AGCTAGGCACGCACCAAGATGCCTCCAATGAGCTGTAAGGGATCCGCTCC					PREDICTED: Rattus norvegicus similar to integrin beta-5 (predicted) (RGD1563276_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661958-S	ILMN_48136	LOC502013	XM_577441.1	XM_577441.1		502013	62661958	XM_577441.1	LOC502013	XP_577441.1	ILMN_1364043	0002970048	S	1004	GGCGATGACAAAGGAGAGCCAAACATGGGGGATAAAGGATGAGGAGACCC					PREDICTED: Rattus norvegicus similar to pollen coat oleosin-glycine rich protein (LOC502013), mRNA.					
Rattus norvegicus	RefSeq	GI_62662073-S	ILMN_60017	LOC502035	XM_577466.1	XM_577466.1		502035	62662073	XM_577466.1	LOC502035	XP_577466.1	ILMN_1375197	0006510315	S	1315	CTCTGGTGGCTGTGGAGCGGGGCATCCAGCTCTGGCGTTTCTATAGCTTT					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG22260 (LOC502035), mRNA.					
Rattus norvegicus	RefSeq	GI_62660528-S	ILMN_56051	LOC498378	XM_573613.1	XM_573613.1		498378	62660528	XM_573613.1	LOC498378	XP_573613.1	ILMN_1362561	0004760133	S	1650	CCTGGATTGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498378), mRNA.					
Rattus norvegicus	RefSeq	GI_11067394-S	ILMN_277624	TCAM1	NM_021673.1	NM_021673.1		59305	11067394	NM_021673.1	Tcam1	NP_067705.1	ILMN_1362984	0005890563	S	1547	ACGGTAGGAAACGGACGCACAGGCAGAAAGAGCAGAACAAAGGCGGGGAG	10	+	95683493-95683542	10q32.1	Rattus norvegicus testicular cell adhesion molecule 1 (Tcam1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62078838-S	ILMN_268749	LRRC26	NM_001014053.1	NM_001014053.1		311803	62078838	NM_001014053.1	Lrrc26	NP_001014075.1	ILMN_1350768	0000630576	S	1119	TCCAAGCCTAAGGGTTCCGCTGTTGTTTCTAGCGCTCCTGTAGCATCCCG	3	+	3453651-3453661:3453662-3453700	3p13	Rattus norvegicus leucine rich repeat containing 26 (Lrrc26), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661540-S	ILMN_48310	LOC290273	XM_224238.3	XM_224238.3		290273	62661540	XM_224238.3	LOC290273	XP_224238.3	ILMN_1367853	0003830025	S	324	CAGCAGGTCGCTAAAGAGAACCAACAGCCCCCGTGTCACAGCAGGTCTCT				15p12	PREDICTED: Rattus norvegicus similar to Ran-interacting protein MOG1 (LOC290273), mRNA.					
Rattus norvegicus	RefSeq	GI_56605765-S	ILMN_269537	ETF1	NM_001008344.1	NM_001008344.1		307503	56605765	NM_001008344.1	Etf1	NP_001008345.1	ILMN_1373587	0002480253	S	2124	TTGTGCCCGGCTCTTGGGAGACGGTGCTCTACTGAGGCTCCCTATAACCT	18	-	27386630-27386679	18p12	Rattus norvegicus eukaryotic translation termination factor 1 (Etf1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code) [goid 6415] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site [goid 16149] [evidence IEA]	MGC94734	MGC94734
Rattus norvegicus	RefSeq	GI_62647580-S	ILMN_50356	LOC502829	XM_578329.1	XM_578329.1		502829	62647580	XM_578329.1	LOC502829	XP_578329.1	ILMN_1373963	0002260092	S	310	CCTATTTCTGTCAGCAGAGTTGGAATTCTCCTCCCACAGTGCTCCAGGGC				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain VK-1 (LOC502829), mRNA.					
Rattus norvegicus	RefSeq	GI_16758713-S	ILMN_297215	BLVRA	NM_053850.1	NM_053850.1		116599	16758713	NM_053850.1	Blvra	NP_446302.1	ILMN_1369386	0001190592	S	999	TCAGAGACTTCTGAAGGGGGCCAGGGTTTGGTCCTATCAACCATTCACCT	3	+	114644927-114644976	3q36	Rattus norvegicus biliverdin reductase A (Blvra), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]	Catalysis of the reaction: bilirubin + NAD(P)+ = biliverdin + NAD(P)H + H+ [goid 4074] [evidence TAS]; Catalysis of the reaction: bilirubin + NAD(P)+ = biliverdin + NAD(P)H + H+ [goid 4074] [evidence IEA]; Catalysis of the reaction: bilirubin + NAD(P)+ = biliverdin + NAD(P)H + H+ [goid 4074] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57528299-S	ILMN_278948	DRG1	NM_001009685.1	NM_001009685.1		305470	57528299	NM_001009685.1	Drg1	NP_001009685.1	ILMN_1351359	0004730113	S	1519	GATGCTGTGCCTGCAACACCTCAGCAACGTACCTTCCCTACTTTGGTGTC	14	-	83855932-83855981	14q21	Rattus norvegicus developmentally regulated GTP binding protein 1 (Drg1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]		Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC94569	MGC94569
Rattus norvegicus	RefSeq	GI_62644080-S	ILMN_277794	WDR3_PREDICTED	XM_001065786.1	XM_001065786.1		310720	109467278	XM_001065786.1	Wdr3_predicted	XP_001065786.1	ILMN_1354528	0006220341	S	3259	AAGGAAGAATCATGGACTGTGGGGCTGGAGGGATGATGGGATGCCTGGGG				2q34	PREDICTED: Rattus norvegicus WD repeat domain 3 (predicted) (Wdr3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661786-S	ILMN_61194	PCDH9_PREDICTED	XM_224429.4	XM_224429.4		306091	109501789	XM_224429.4	Pcdh9_predicted	XP_224429.3	ILMN_1361061	0003190139	S	5359	GGGTAGGGGTGCATTGCTTATTGAAGTCATTTTTGTCGGTTTGTGAGGGG	15	-	75827290-75827339	15q21	PREDICTED: Rattus norvegicus protocadherin 9 (predicted) (Pcdh9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30842793-S	ILMN_287119	CIP98	NM_181088.1	NM_181088.1		313255	30842793	NM_181088.1	Cip98	NP_851602.1	ILMN_1363569	0002100398	S	2535	TGGTGCCAACACACGCCAGCCTCTGCCCAGGATCGTCACAATTCAGCGAG	5	-	80382843-80382847:80383279-80383323	5q24	Rattus norvegicus CASK-interacting protein CIP98 (Cip98), mRNA.	The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A 9+0 cilium that forms the portion of the axoneme traversing the boundary between the photoreceptor inner and outer segments [goid 32391] [evidence IDA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence IDA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IPI]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of inner ear receptor cells [goid 60122] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_13928929-S	ILMN_263888	SLC15A2	NM_031672.1	NM_031672.1		60577	13928929	NM_031672.1	Slc15a2	NP_113860.1	ILMN_2039970	0006200470	S	3417	CTGCATGAGAAACTTATTAAAAATCTGTGGCGAGGTGGGACAGGTGCAGG	11	+	65849417-65849466	11q22	Rattus norvegicus solute carrier family 15 (H+/peptide transporter), member 2 (Slc15a2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence ISS]; The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells [goid 42891] [evidence IMP]; The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells [goid 42938] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of oligopeptide from one side of the membrane to the other. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15334] [evidence IEA]; Catalysis of the transfer of oligopeptide from one side of the membrane to the other. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15334] [evidence ISS]; Enables the directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells [goid 42895] [evidence IMP]; Enables the directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells [goid 42936] [evidence IDA]	MGC91625	MGC91625
Rattus norvegicus	RefSeq	GI_62667421-S	ILMN_61742	RGD1560129_PREDICTED	XM_577043.2	XM_577043.2		501647	109511231	XM_577043.2	RGD1560129_predicted	XP_577043.2	ILMN_1350301	0000510358	S	912	GGCAGATTGCAACCATTCCGATGATGCGCCTATTTCTGGGCATCTCTCCT	X	-	140196209-140196258	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632404H22 (predicted) (RGD1560129_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865357-A	ILMN_275196	RNPS1	NM_001011890.1	NM_001011890.1		287113	58865357	NM_001011890.1	Rnps1	NP_001011890.1	ILMN_1376585	0003780440	S	1377	CGTTTTCCAGATGACCTAGGACCCGTCAGACAACCTGGCCAAGCCATGCT	10	+	13681143-13681192	10q12	Rattus norvegicus ribonucleic acid binding protein S1 (Rnps1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins [goid 184] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654907-S	ILMN_262465	ARID5A	NM_001034934.1	NM_001034934.1		316327	77917561	NM_001034934.1	Arid5a	NP_001030106.1	ILMN_1372458	0002120181	S	1158	CAAGAAACTGAAGGCGGTGTCTCCCTTTCTGAAGGAGGTGGATGCCAGGG	9	+	35243182-35243231	9q21	Rattus norvegicus AT rich interactive domain 5A (Mrf1 like) (Arid5a), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]		Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	MGC124686	MGC124686
Rattus norvegicus	RefSeq	GI_62664584-S	ILMN_65802	LOC291561	XM_212827.3	XM_212827.3		291561	62664584	XM_212827.3	LOC291561	XP_212827.3	ILMN_1354583	0004590129	S	284	AAAAGACAGGAGCTGGTACGGCTACGCGACTTTCCTTCCCACAGCCCCTC				18q12.1	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC291561), mRNA.					
Rattus norvegicus	RefSeq	GI_62664210-S	ILMN_47862	LOC291676	XM_214584.3	XM_214584.3		291676	62664210	XM_214584.3	LOC291676	XP_214584.3	ILMN_1357778	0002360156	S	742	GCCAGCAGAGACAGAGTTTCAGAAGCAGCAGGAGACCTACATGGCCCAGG				18p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5133400G04 (predicted) (LOC291676), mRNA.					
Rattus norvegicus	RefSeq	GI_58865369-A	ILMN_274411	ABCF3	NM_001011896.1	NM_001011896.1		287982	58865369	NM_001011896.1	Abcf3	NP_001011896.1	ILMN_1376754	0004480072	S	2270	CCCCTGAGCTACCATGTAGGCAACCAACTCCAGGTTTAGGACTTTCCCCG	11	-	82570697-82570746	11q23	Rattus norvegicus ATP-binding cassette, sub-family F (GCN20), member 3 (Abcf3), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656795-S	ILMN_68910	LOC501707	XM_577112.1	XM_577112.1		501707	62656795	XM_577112.1	LOC501707	XP_577112.1	ILMN_1360452	0003830538	S	1245	GCTGGAGCAGAATTTCAGGGGGTGGGCATCTTCAAGGGTGTGAGGTGGCT					PREDICTED: Rattus norvegicus similar to integrin alpha E2 (LOC501707), mRNA.					
Rattus norvegicus	RefSeq	GI_62651592-S	ILMN_49276	LOC500756	XM_576134.1	XM_576134.1		500756	62651592	XM_576134.1	LOC500756	XP_576134.1	ILMN_1355201	0003390300	S	839	GCTGGGCTCTGGATTCTGGGAGTTACCCTGGTCCCAAGCAGCAGCTATGA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500756), mRNA.					
Rattus norvegicus	RefSeq	GI_62653178	ILMN_61976	LOC503177	XM_578701.1	XM_578701.1		503177	62653178	XM_578701.1	LOC503177	XP_578701.1	ILMN_1649761	0001500497	S	100	TGGCAAGAGCAGATAGGTCACCAAGACCAAGCATCCACAGGAGGCACCCT					PREDICTED: Rattus norvegicus similar to gastric mucin (LOC503177), mRNA.					
Rattus norvegicus	RefSeq	GI_34875060-S	ILMN_270082	RGD1560640_PREDICTED	XR_009488.1	XR_009488.1		498023	109492200	XR_009488.1	RGD1560640_predicted		ILMN_1349848	0003120059	S	142	CTTCAAGATGGTGGTAGCACCCATCGAGTGTGTCATGCTGCAGGTACAGC				10q32.2	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (predicted) (RGD1560640_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656113-S	ILMN_49051	RGD1308564_PREDICTED	XM_220454.4	XM_220454.4		287305	109488133	XM_220454.4	RGD1308564_predicted	XP_220454.4	ILMN_1366966	0000540181	S	852	GGCCTTTACCGAGACCCTACGTGGCATCATCTCCTTTTTCCAAGAGCCCC	10	+	43931443-43931492	10q22	PREDICTED: Rattus norvegicus similar to L-amino acid oxidase 1 (predicted) (RGD1308564_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758479-S	ILMN_299824	DLL3	NM_053666.1	NM_053666.1		114125	16758479	NM_053666.1	Dll3	NP_446118.1	ILMN_1352954	0005420288	S	1669	TTACAAGACGGTGCTGGGGATGGCCCCACGTCGTCGGCTGACTGGAATCA	1	-	83373852-83373881:83374028-83374047	1q21	Rattus norvegicus delta-like 3 (Drosophila) (Dll3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence TAS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regionalization process by which embryonic segments are divided into compartments that will result in differences in cell differentiation [goid 7386] [evidence ISS]; The regionalization process by which embryonic segments are divided into compartments that will result in differences in cell differentiation [goid 7386] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the Notch signaling pathway [goid 45746] [evidence IDA]; The process whose specific outcome is the progression of the paraxial mesoderm over time, from its formation to the mature structure. The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube [goid 48339] [evidence ISS]; The process whose specific outcome is the progression of the paraxial mesoderm over time, from its formation to the mature structure. The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube [goid 48339] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of astrocyte differentiation [goid 48712] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence IDA]	Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence TAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652943-S	ILMN_49044	MUC19_PREDICTED	XM_235593.4	XM_235593.4		315239	109481201	XM_235593.4	Muc19_predicted	XP_235593.4	ILMN_1362390	0000610497	S	5235	TGGCAGCACCATCCCTTACAGATACAGGCACACCACAACCTGCTCATGTC	7	+	130416959-130417008	7q35	PREDICTED: Rattus norvegicus mucin 19 (predicted) (Muc19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18777743-S	ILMN_70091	LIPA	NM_012732.2	NM_012732.2		25055	18777743	NM_012732.2	Lipa	NP_036864.2	ILMN_1374661	0003170204	S	1800	ATGGCTCACATCAGGGTATCTTCCCTCAGACACTGGTCTCTCGACGAACC				1q52	Rattus norvegicus lipase A, lysosomal acid (Lipa), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16125] [evidence IDA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a steryl ester + H2O = a sterol + a fatty acid [goid 4771] [evidence IDA]; Catalysis of the reaction: a steryl ester + H2O = a sterol + a fatty acid [goid 4771] [evidence IEA]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	LAL; Chole; Chole2	LAL; Chole; Chole2
Rattus norvegicus	RefSeq	GI_62664548-S	ILMN_277729	CCBE1_PREDICTED	XM_001065428.1	XM_001065428.1		361341	109507480	XM_001065428.1	Ccbe1_predicted	XP_001065428.1	ILMN_1355106	0005360348	S	1771	TCCAAACCCTGCCTTCTAAGTTTCCTTCGCATCACAACAGCAGCAGGAGG				18q12.1	PREDICTED: Rattus norvegicus collagen and calcium binding EGF domains 1 (predicted) (Ccbe1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741777-S	ILMN_269174	SMPD1	NM_001006997.1	NM_001006997.1		308909	55741777	NM_001006997.1	Smpd1	NP_001006998.1	ILMN_1354054	0002650167	S	2186	AGCCGAGGTCTTAGTGCTCTGGATTGTAGACAGGAGCTATTGCCCCAGCC	1	+	163282689-163282738	1q33	Rattus norvegicus sphingomyelin phosphodiesterase 1, acid lysosomal (Smpd1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle, specialized for the storage and secretion various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome [goid 42599] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine [goid 6685] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid [goid 46513] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94748	MGC94748
Rattus norvegicus	RefSeq	GI_21426764-S	ILMN_265459	GPSM1	NM_144745.1	NM_144745.1		246254	21426764	NM_144745.1	Gpsm1	NP_653346.1	ILMN_1357506	0006370487	S	2482	GGGGGAGGGCATGCTTCTGTCCCCATATGATCCACAGCTTAACTGCAGGC	3	+	4519745-4519794	3p13	Rattus norvegicus G-protein signalling modulator 1 (AGS3-like, C. elegans) (Gpsm1), mRNA.		Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]	Ags3	Ags3
Rattus norvegicus	RefSeq	GI_62645015-S	ILMN_60425	LHX6_PREDICTED	XM_231175.3	XM_231175.3		311901	62645015	XM_231175.3	Lhx6_predicted	XP_231175.3	ILMN_1352539	0004230152	S	3238	GACGTCTCCACTACTCTGTTCAAAACAGCCTGGGAATGTACAGGCCATTG				3p11	PREDICTED: Rattus norvegicus LIM homeobox protein 6 (predicted) (Lhx6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661157-S	ILMN_64212	RPP14_PREDICTED	XM_341295.3	XM_341295.3		361020	109501373	XM_341295.3	Rpp14_predicted	XP_341296.2	ILMN_1351079	0005340138	S	1755	CTCAGGTGATCCCACACCGTCTTCTGACCTATGCCGAAACTACATGCACA	15	-	18824632-18824681	15p14	PREDICTED: Rattus norvegicus ribonuclease P 14 subunit homolog (human) (predicted) (Rpp14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34867758-S	ILMN_53136	LOC299297	XM_238470.2	XM_238470.2		299297	34867758	XM_238470.2	LOC299297	XP_238470.1	ILMN_1356770	0002630750	S	230	TCCTAAAGGAGCCACCCCAGGGCAGCATTATGTGCAGGCTCTGGAGAGTT					PREDICTED: Rattus norvegicus hypothetical LOC299297 (LOC299297), mRNA.					
Rattus norvegicus	RefSeq	GI_57527969-S	ILMN_284402	SH2D2A	NM_207605.3	NM_207605.3		310688	57527969	NM_207605.3	Sh2d2a	NP_997488.2	ILMN_1370566	0002900594	S	1395	GCACTGATCCAGTTCCTCGGAGAAGAGCGCTTAGGAGCCCATGCATTGCC	2	+	179924456-179924505	2q34	Rattus norvegicus SH2 domain protein 2A (Sh2d2a), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that modulates the frequency, rate or extent of T cell activation [goid 50863] [evidence NAS]	Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651316	ILMN_57589	LOC362795	XM_343121.2	XM_343121.2		362795	62651316	XM_343121.2	LOC362795	XP_343122.2	ILMN_1649896	0005550050	S	1362	CTAGCCCTCTAGGACCAAGCCCATGCTGCTGAACAACCAGACACACAGGT					PREDICTED: Rattus norvegicus similar to Ig gamma-3 chain C region, membrane-bound form - mouse (LOC362795), mRNA.			Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742616-S	ILMN_268935	EGFR	NM_031507.1	NM_031507.1		24329	25742616	NM_031507.1	Egfr	NP_113695.1	ILMN_1362571	0002030278	S	3912	AAAGCATAACTCTGACGGGCTTTGTCACTGAGCCAAGAAGTGGGCCCCTC	14	+	97787967-97788016	14q22	Rattus norvegicus epidermal growth factor receptor (Egfr), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence ISS]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IDA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus [goid 33993] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; The process whose specific outcome is the progression of the tongue over time, from its formation to the mature structure. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43586] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 48143] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; Any process that modulates the activity of the enzyme nitric-oxide synthase [goid 50999] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IMP]; Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51968] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence ISS]; Combining with an epidermal growth factor to initiate a change in cell activity [goid 5006] [evidence IDA]; Combining with an epidermal growth factor to initiate a change in cell activity [goid 5006] [evidence TAS]; Combining with an epidermal growth factor to initiate a change in cell activity [goid 5006] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Modulates the activity of nitric oxide synthase [goid 30235] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an iron-sulfur cluster, a combination of iron and sulfur atoms [goid 51536] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	ERBB1; ErbB-1; Errp	ERBB1; ErbB-1; Errp
Rattus norvegicus	RefSeq	GI_62646560-S	ILMN_265658	RGD1306208_PREDICTED	XM_215978.3	XM_215978.3		296483	62646560	XM_215978.3	RGD1306208_predicted	XP_215978.3	ILMN_1373701	0006520292	S	456	CCTACCACCCCAACTGAAGCCCACGAAGATCCCTGATCCTTTGGACCGAC	3	-	170848275-170848324	3q43	PREDICTED: Rattus norvegicus hypothetical LOC296483 (predicted) (RGD1306208_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648218-S	ILMN_272488	CLECSF2_PREDICTED	XM_001067454.1	XM_001067454.1		312745	109474304	XM_001067454.1	Clecsf2_predicted	XP_001067454.1	ILMN_1355704	0001780520	S	674	GAGGACAATGTGGCTTCCTGAGTGACAATGGGATCAGCAGTGGCAGGGAC				4q42	PREDICTED: Rattus norvegicus C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced) (predicted) (Clecsf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642779-S	ILMN_60787	AGGF1	XM_226709.4	XM_226709.4		310005	109464264	XM_226709.4	Aggf1	XP_226709.4	ILMN_1364200	0004730736	S	2237	TGGAGAAGATGGGTTGGAAAAAGGGAGAAGGCCTGGGGAAGGACGGTGGC	2	-	25725704-25725753	2q12	PREDICTED: Rattus norvegicus angiogenic factor with G patch and FHA domains 1 (Aggf1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IEA]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases angiogenesis [goid 45766] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650067-S	ILMN_61793	LOC500590	XM_575963.1	XM_575963.1		500590	62650067	XM_575963.1	LOC500590	XP_575963.1	ILMN_1353473	0004010093	S	747	CCCGGCCAGGAACTAACGGAGCAGGACGGAAGGTCTGTGCTTAAGAATGG				5q36	PREDICTED: Rattus norvegicus similar to T-cell antigen 4-1BB precursor - mouse (LOC500590), mRNA.					
Rattus norvegicus	RefSeq	GI_16758095-S	ILMN_293601	TCF4	NM_053369.1	NM_053369.1		84382	16758095	NM_053369.1	Tcf4	NP_445821.1	ILMN_1369541	0001660048	S	1835	GGGAGACACAGCGAATCACATGGGTCAGATGTGAAAGGGTCCAAGTTGCC	18	+	66359576-66359591:66359592-66359595:66359810-66359839	18q12.1	Rattus norvegicus transcription factor 4 (Tcf4), mRNA.	Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence NAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642516-S	ILMN_294013	VWA2_PREDICTED	XR_008134.1	XR_008134.1		307988	109464058	XR_008134.1	Vwa2_predicted		ILMN_1349022	0006100463	S	2291	AGCCTACAGGAAGACAACAGCCAACCCCCTCCCAGCAAGCTCCCAAGCAT				1q55	PREDICTED: Rattus norvegicus von Willebrand factor A domain containing 2 (predicted) (Vwa2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55926202-S	ILMN_291037	IDH3B	NM_053581.1	NM_053581.1		94173	55926202	NM_053581.1	Idh3B	NP_446033.1	ILMN_1371688	0001400041	S	1159	CCATGGGGGCTAGAGCCCTTTACTTCCTCCTTCAAAAGGATCATGCTTCG	3	-	117892911-117892948:117892949-117892960	3q36	Rattus norvegicus isocitrate dehydrogenase 3 (NAD+) beta (Idh3B), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+ [goid 4449] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	MGC94111	MGC94111
Rattus norvegicus	RefSeq	GI_62648933-S	ILMN_279118	IGFBPL1_PREDICTED	XM_001071720.1	XM_001071720.1		366366	109476434	XM_001071720.1	Igfbpl1_predicted	XP_001071720.1	ILMN_1371125	0003710519	S	982	CCTCGGTTCCGGGTGACCTCCTGTGATGAACATGGCTTCCAGAGACACTG				5q22	PREDICTED: Rattus norvegicus insulin-like growth factor binding protein-like 1 (predicted) (Igfbpl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638844-S	ILMN_69667	LOC499068	XM_574349.1	XM_574349.1		499068	62638844	XM_574349.1	LOC499068	XP_574349.1	ILMN_1360210	0006100288	S	1347	AGCCTTCAGCAACAGTTCATCGCTCGCACAGCATCAGAGAAGCCACACCG				1q12	PREDICTED: Rattus norvegicus similar to Zfp583 protein (LOC499068), mRNA.					
Rattus norvegicus	RefSeq	GI_62648366-S	ILMN_65237	LOC502880	XM_578381.1	XM_578381.1		502880	62648366	XM_578381.1	LOC502880	XP_578381.1	ILMN_1355980	0002900577	S	4853	CAGTGCTAAGGGAGTGGGAGCGTCTCTCGGCGGTGCCAATGGACTCAATA				4q42	PREDICTED: Rattus norvegicus similar to fibroin heavy chain Fib-H (LOC502880), mRNA.					
Rattus norvegicus	RefSeq	GI_62639075-S	ILMN_59178	LOC308394	XM_218390.3	XM_218390.3		308394	62639075	XM_218390.3	LOC308394	XP_218390.3	ILMN_1361449	0006420528	S	2227	CCACAAGAGCCAGTGTCCTTGGCTTGCATAGATGTTTCCCACTTCCCTCC				1q21	PREDICTED: Rattus norvegicus similar to brain carcinoembryonic antigen (LOC308394), mRNA.					
Rattus norvegicus	RefSeq	GI_62656543-I	ILMN_55113	SERPINF2_PREDICTED	XM_573141.1	XM_573141.1		287527	62656543	XM_573141.1	Serpinf2_predicted	XP_573141.1	ILMN_1375995	0002260372	S	60	AAGGTCCTGTGGGAGGAGAGAGCTAGGCCGTGCTGGCTACACTGGGTGGA				10q24	PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade F, member 2 (predicted) (Serpinf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647101-S	ILMN_299019	TAS2R38	NM_001024685.1	NM_001024685.1		500091	67010014	NM_001024685.1	Tas2r38	NP_001019856.1	ILMN_1356362	0000070152	S	813	GTGGCACAATAAGGGAGGAGTGATGGTCTGTATAGGGATGATGGCAGCCT	4	-	68196305-68196354	4q22	Rattus norvegicus taste receptor, type 2, member 38 (Tas2r38), mRNA.					
Rattus norvegicus	RefSeq	GI_62638796-S	ILMN_270298	LOC292498	XR_009620.1	XR_009620.1		292498	109460901	XR_009620.1	LOC292498		ILMN_1361967	0002970438	S	1510	GGAATAACATCGATCCCCACCTCCATGTGTAGTGTGACATGCATGGTTGG				1q12	PREDICTED: Rattus norvegicus putative pheromone receptor V2R4 (LOC292498), misc RNA.					
Rattus norvegicus	RefSeq	GI_62655244	ILMN_51940	LOC501168	XM_576593.1	XM_576593.1		501168	62655244	XM_576593.1	LOC501168	XP_576593.1	ILMN_1650426	0000510711	S	2039	TTGCCTTAGATTTGACTGGCAGGGCTTCTTCAGGGCCAGCTCCGCCTCCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A230078I05 gene (LOC501168), mRNA.					
Rattus norvegicus	RefSeq	GI_62651574-S	ILMN_48019	LOC500753	XM_580118.1	XM_580118.1		500753	62651574	XM_580118.1	LOC500753	XP_580118.1	ILMN_1357764	0004230132	S	258	ACCCCAAGAGACAGCTCCTCAGGGCGAGGCCCACAAACTTCCAGGTGATT					PREDICTED: Rattus norvegicus LOC500753 (LOC500753), mRNA.					
Rattus norvegicus	RefSeq	GI_62644697-S	ILMN_272007	ARRDC1	XM_001071550.1	XM_001071550.1		366001	109469414	XM_001071550.1	Arrdc1	XP_001071550.1	ILMN_1373311	0003450131	S	1563	AGAGGTTGGGGTAGGGCGGCAGAGATCTGGGGCCTGGAGAGACTGTATAA				3p13	PREDICTED: Rattus norvegicus arrestin domain containing 1 (Arrdc1), mRNA.					
Rattus norvegicus	RefSeq	GI_23397410-S	ILMN_280194	CYP4B1	NM_016999.2	NM_016999.2		24307	23397410	NM_016999.2	Cyp4b1	NP_058695.2	ILMN_1353540	0000360368	S	1559	GGGCAGCACAAGCCGTGACTCTTCCTGGGATGTTGCCCTCCTAGATAGAA	5	-	135917638-135917687	5q36	Rattus norvegicus cytochrome P450, family 4, subfamily b, polypeptide 1 (Cyp4b1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IMP]; The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence IDA]; The chemical reactions and pathways involving biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs) [goid 18879] [evidence IMP]; The chemical reactions and pathways involving fluorene, a tricyclic polycyclic aromatic hydrocarbon containing a five-membered ring. It is a major component of fossil fuels and their derivatives and is also a by-product of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents [goid 18917] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a drug that has originated externally to the cell or organism [goid 42738] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of a drug that has originated externally to the cell or organism [goid 42738] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IMP]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: fluorene + 2 H+ + 2 e- + O2 = H2O + 9-fluorenol [goid 18585] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655160-S	ILMN_69607	CRYGC	XM_343582.3	XM_343582.3		24277	109486209	XM_343582.3	Crygc	XP_343583.2	ILMN_1356459	0006520128	S	489	GGGGCGCTGTAGATGCTAAGGCAGGCTCTTTGCGGAGGGTGGTAGATTTA	9	-	63720658-63720707	9q32	PREDICTED: Rattus norvegicus crystallin, gamma C (Crygc), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655845-S	ILMN_294879	MRPS34_PREDICTED	XM_001057977.1	XM_001057977.1		287126	109490364	XM_001057977.1	Mrps34_predicted	XP_001057977.1	ILMN_1352160	0003850541	S	630	GGACTCGAATGCGCCCCTGGGACTACCCTGCAAAACAGGAGACTAAAGGG				10q12	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S34 (predicted) (Mrps34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621071-S	ILMN_297522	H2-M3	NM_022921.1	NM_022921.1		24747	12621071	NM_022921.1	H2-M3	NP_075210.1	ILMN_1360773	0006100594	S	991	GAGGTGTGCTCACTGTTGTTTTGGTGTACAGGAGGAGGGGCGCAGGCATG	20	-	1412995-1412999:1414196-1414240	20p12	Rattus norvegicus histocompatibility 2, M region locus 3 (H2-M3), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class Ib alpha chain and, in most cases, an invariant beta2-microglobin chain, and with or without a bound peptide or lipid antigen. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families [goid 32398] [evidence ISS]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; The change in morphology and behavior of an alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response [goid 2287] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family [goid 2476] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family [goid 2477] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family [goid 2481] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity [goid 45954] [evidence ISS]	Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]	RanoM301; RT1-M3-1; RanoM302; RanoM3; 4B2/3.7	RanoM301; RT1-M3-1; RanoM302; RanoM3; 4B2/3.7
Rattus norvegicus	RefSeq	GI_62718602-S	ILMN_48279	LOC503378	XM_578916.1	XM_578916.1		503378	62718602	XM_578916.1	LOC503378	XP_578916.1	ILMN_1362505	0006450575	S	2792	TCCAATGGGTTACCCTGGAGATGAGGACAATGGAAGTATGGCCGCTTGGT					PREDICTED: Rattus norvegicus similar to alpha-1,2-mannosidase, putative (LOC503378), mRNA.					
Rattus norvegicus	RefSeq	GI_62644526-S	ILMN_283415	LOC687588	XM_001079268.1	XM_001079268.1		687588	109467763	XM_001079268.1	LOC687588	XP_001079268.1	ILMN_1368845	0004210497	S	391	GTGGACACTCATGTTGCTGAGTGGACACTGGTGTTGCAGCAGGAGTGGAC					PREDICTED: Rattus norvegicus similar to CG12164-PA (LOC687588), mRNA.					
Rattus norvegicus	RefSeq	GI_62643003-S	ILMN_49585	FYB_PREDICTED	XM_226812.4	XM_226812.4		310131	109464458	XM_226812.4	Fyb_predicted	XP_226812.4	ILMN_1359956	0002510605	S	4608	GGTTCCCTCTAAGTTCTCGGGGATTTCTGGGTGCAGCGATGGTGCTTCTC	2	+	56069463-56069512	2q16	PREDICTED: Rattus norvegicus FYN binding protein (predicted) (Fyb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506902-S	ILMN_291162	MSMB	NM_019188.1	NM_019188.1		29311	9506902	NM_019188.1	Msmb	NP_062061.1	ILMN_1349320	0003390064	S	310	ATAGTGTGGTGGAACGGACGAACCCAGGAAAGACCTGTCCAGTCAATGGC	16	+	7639784-7639833	16p16	Rattus norvegicus beta-microseminoprotein (Msmb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			PSP94	PSP94
Rattus norvegicus	RefSeq	GI_62659332-S	ILMN_281147	LAX1	NM_001017491.1	NM_001017491.1		498232	62945341	NM_001017491.1	Lax1	NP_001017491.1	ILMN_1355202	0002100465	S	1275	CAGACCGTGGAGAGCCTGCCCAGAGGACGCTACCTTCAGTGTATCACATG	13	-	46606965-46607014	13q13	Rattus norvegicus lymphocyte transmembrane adaptor 1 (Lax1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence ISS]; A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor [goid 46649] [evidence ISS]; A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor [goid 46649] [evidence IEA]; The regulated release of immunoglobulins from a B cell or plasma cell, whose mechanism includes the use of alternate polyadenylylation signals to favor the biosynthesis of secreted forms of immunoglobulin over membrane-bound immunoglobulin [goid 48305] [evidence ISS]; The regulated release of immunoglobulins from a B cell or plasma cell, whose mechanism includes the use of alternate polyadenylylation signals to favor the biosynthesis of secreted forms of immunoglobulin over membrane-bound immunoglobulin [goid 48305] [evidence IEA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B or T cell [goid 50851] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B or T cell [goid 50851] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation [goid 50868] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653628	ILMN_263473	ZBTB16	NM_001013181.1	NM_001013181.1		353227	61557205	NM_001013181.1	Zbtb16	NP_001013199.1	ILMN_1649805	0002320010	S	1945	TCACACAGGTGAGAAGCCCTTTGAGTGCAAACTCTGCCACCAGCGCTCCC	8	-	51931841-51931883:51934401-51934407	8q23	Rattus norvegicus zinc finger and BTB domain containing 16 (Zbtb16), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence TAS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo [goid 1823] [evidence IEA]; The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo [goid 1823] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence IEA]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process by which the anatomical structures of leg are generated and organized. Morphogenesis pertains to the creation of form. A leg is a limb on which an animal walks and stands [goid 35110] [evidence IEA]; The process by which the anatomical structures of leg are generated and organized. Morphogenesis pertains to the creation of form. A leg is a limb on which an animal walks and stands [goid 35110] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35136] [evidence IEA]; The process by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35136] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid cell differentiation [goid 45638] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid cell differentiation [goid 45638] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence TAS]; The self-renewing division of a germline stem cell in the male gonad, to produce a daughter stem cell and a daughter germ cell, which will divide to form the male gametes [goid 48133] [evidence IEA]; The self-renewing division of a germline stem cell in the male gonad, to produce a daughter stem cell and a daughter germ cell, which will divide to form the male gametes [goid 48133] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zfp145; Lx; Znf145; Plzf	Zfp145; Lx; Znf145; Plzf
Rattus norvegicus	RefSeq	GI_62657874-S	ILMN_266192	TMPRSS7_PREDICTED	XM_001066379.1	XM_001066379.1		288118	109494340	XM_001066379.1	Tmprss7_predicted	XP_001066379.1	ILMN_1370688	0001570167	S	2241	CTGTGTTTCCACCTACGGGATCATCACCTCTCGGATGCTCTGTGCAGGGG				11q21	PREDICTED: Rattus norvegicus transmembrane serine protease 7 (predicted) (Tmprss7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654870	ILMN_277676	RGD1564244_PREDICTED	XM_236969.3	XM_236969.3		301280	62654870	XM_236969.3	RGD1564244_predicted	XP_236969.3	ILMN_1650634	0004590575	S	1	ATGAGTGGATTTGACTTTTCTGCTATTCTTGCACTTCTGGGACTCATTCT	9	-	15930114-15930163	9q12	PREDICTED: Rattus norvegicus similar to MGC68696 protein (predicted) (RGD1564244_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578008-S	ILMN_272049	OLR1076	NM_001000712.1	NM_001000712.1		404961	47578008	NM_001000712.1	Olr1076	NP_001000712.1	ILMN_1350125	0002940735	S	773	GAGTGTACCTCAGTTCTGCTGTGACCCAAAATGCGCATGCCACTGCAATG	7	-	12063658-12063707	7q11	Rattus norvegicus olfactory receptor 1076 (Olr1076), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1076	Olr1076
Rattus norvegicus	RefSeq	GI_62645169-S	ILMN_67838	B3GALT1_PREDICTED	XM_345362.2	XM_345362.2		366064	62645169	XM_345362.2	B3galt1_predicted	XP_345363.1	ILMN_1373126	0006980403	S	1426	TCACAACAAGTCGGGAAAGATACGCAGTCAGGAGCACACACTAGATGAGG				3q21	PREDICTED: Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 (predicted) (B3galt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377480-S	ILMN_297380	ST14	NM_053635.2	NM_053635.2		114093	31377480	NM_053635.2	St14	NP_446087.1	ILMN_1364958	0001190286	S	2983	GAACTGCTTCCAGACTCTAAAGGAAAACTATCGTCGCGCTCCTGGGGGCC				8q13	Rattus norvegicus suppression of tumorigenicity 14 (colon carcinoma) (St14), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence IDA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence IEA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IDA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence ISS]	MT-SP1	MT-SP1
Rattus norvegicus	RefSeq	GI_62655701-S	ILMN_274622	LOC497867	XM_001076872.1	XM_001076872.1		497867	109489602	XM_001076872.1	LOC497867	XP_001076872.1	ILMN_1354128	0005050300	S	778	AGGGACAAGCAGGCAGCTGTTCATCATTGTTGTCCCAAGCAGTCCCTGGG				10q12	PREDICTED: Rattus norvegicus similar to 1110001K21Rik protein (LOC497867), mRNA.					
Rattus norvegicus	RefSeq	GI_62656722-S	ILMN_65080	THRAP1_PREDICTED	XM_220813.3	XM_220813.3		303403	62656722	XM_220813.3	Thrap1_predicted	XP_220813.3	ILMN_1372402	0006200053	S	9045	CACGAGAGCCCAGCCAGTCTCCTGCCTGCATTGCTGACTTGAACTCACAG				10q26	PREDICTED: Rattus norvegicus thyroid hormone receptor associated protein 1 (predicted) (Thrap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506726-S	ILMN_268407	GJA6	NM_019308.1	NM_019308.1		54256	9506726	NM_019308.1	Gja6	NP_062181.1	ILMN_1353106	0003440088	S	788	CGTCAGCTGTTCTCACCACCATATGTTCTAGTGATCAGGTAGTCCCGGTG	X	+	55121496-55121545	Xq21	Rattus norvegicus gap junction protein, alpha 6 (Gja6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence TAS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence TAS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Assembly of gap junctions, which are found in most animal tissues, and serve as direct connections between the cytoplasms of adjacent cells. They provide open channels through the plasma membrane, allowing ions and small molecules (less than approximately a thousand daltons) to diffuse freely between neighboring cells, but preventing the passage of proteins and nucleic acids [goid 16264] [evidence TAS]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence TAS]	cxn-33; cx33	cxn-33; cx33
Rattus norvegicus	RefSeq	GI_62643732-S	ILMN_62045	INSRR	XM_574972.2	XM_574972.2		60663	109465012	XM_574972.2	Insrr	XP_574972.1	ILMN_1350245	0003360050	S	4276	GAGCCTGACTCCCCACCAACCTTAAATGGAGCTTCAGACTATGGTCCCCC	2	+	179875805-179875854	2q34	PREDICTED: Rattus norvegicus insulin receptor-related receptor (Insrr), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The specification of male sex of an individual organism [goid 30238] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659230-S	ILMN_55022	LOC363971	XM_344132.2	XM_344132.2		363971	62659230	XM_344132.2	LOC363971	XP_344133.2	ILMN_1362696	0000870114	S	576	GGAGGGGGATCTAGCAACTTTATGGGACGTGATGGTGGCAACTATGGTGG					PREDICTED: Rattus norvegicus similar to Hnrpa3 protein (LOC363971), mRNA.					
Rattus norvegicus	RefSeq	GI_57114239-S	ILMN_278571	V1RD6	NM_001008923.1	NM_001008923.1		494272	57114239	NM_001008923.1	V1rd6	NP_001008923.1	ILMN_1349641	0002340600	S	884	CTAGGGGTCCTTGCCCTGTACCCTTCGTTGTGGAACTGCAAAGTCATGTG	1	+	67386384-67386433	1q12	Rattus norvegicus vomeronasal 1 receptor, D6 (V1rd6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13162297	ILMN_63705	GADD45A	NM_024127.2	NM_024127.2		25112	61889084	NM_024127.2	Gadd45a	NP_077041.2	ILMN_1650784	0000780402	S	732	GCAGTCACTCCCCACGCTGATGCAAGGATTACAGAAACTGATGTCAAGGG	4	-	96650372-96650421	4q31	Rattus norvegicus growth arrest and DNA-damage-inducible 45 alpha (Gadd45a), mRNA.		Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The cell cycle process whereby centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle [goid 7098] [evidence IEA]; The cell cycle process whereby centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle [goid 7098] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; The cell cycle process whereby centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle [goid 7098] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Gadd45; Ddit1	Gadd45; Ddit1
Rattus norvegicus	RefSeq	GI_56605805-S	ILMN_269064	TOM1	NM_001008365.1	NM_001008365.1		361370	56605805	NM_001008365.1	Tom1	NP_001008366.1	ILMN_1351051	0003990184	S	1903	GGAGCCTGAAGAGGGCTTTAGTGGCTTATTAGGAAGGGCAATGGTGGCCC	19	+	13925096-13925145	19p11	Rattus norvegicus target of myb1 homolog (chicken) (Tom1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95142	MGC95142
Rattus norvegicus	RefSeq	GI_62655506-S	ILMN_50812	LOC503271	XM_578806.1	XM_578806.1		503271	62655506	XM_578806.1	LOC503271	XP_578806.1	ILMN_1364600	0003520685	S	494	GGCCCTGGCAACCTCACACGGCCACACAAAAACTAATGTCCACTCCAAGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L18 (LOC503271), mRNA.					
Rattus norvegicus	RefSeq	GI_62651051-S	ILMN_286197	ZFP410_PREDICTED	XM_001058294.1	XM_001058294.1		314310	109479646	XM_001058294.1	Zfp410_predicted	XP_001058294.1	ILMN_1363652	0000630519	S	2126	CTTGGCCCAGGCTGAGGTACCAACATACCCCGTACACTTTGACTTGGTCA				6q31	PREDICTED: Rattus norvegicus zinc finger protein 410 (predicted) (Zfp410_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576556-S	ILMN_262829	OLR1642	NM_001000832.1	NM_001000832.1		405121	47576556	NM_001000832.1	Olr1642	NP_001000832.1	ILMN_1366760	0000610164	S	494	CCACCCTGACCTTCCGATTGCCCTACTGTGGGCCCAACCAAATAGATTAT	15	-	27887345-27887394	15p14	Rattus norvegicus olfactory receptor 1642 (Olr1642), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1642	Olr1642
Rattus norvegicus	RefSeq	GI_62641314-S	ILMN_279717	SEPHS2	XM_001080177.1	XM_001080177.1		308993	109462907	XM_001080177.1	Sephs2	XP_001080177.1	ILMN_1373862	0005720110	S	1897	AATAAGGACTGGGAGAGGCTGATCAAACCTCAGAGCCAGGTGTTGGCGGC				1q36	PREDICTED: Rattus norvegicus selenophosphate synthetase 2 (Sephs2), mRNA.			Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + selenide + H2O = AMP + selenophosphate + phosphate [goid 4756] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11968113-S	ILMN_284690	MRPL23	NM_022529.1	NM_022529.1		64360	11968113	NM_022529.1	Mrpl23	NP_071974.1	ILMN_1363841	0000870494	S	219	GCGCACACGGGTACAGCATGGCTCCAACAGGAGGAGGGACCATAAGAATG	1	+	202783604-202783623:202784424-202784453	1q41	Rattus norvegicus mitochondrial ribosomal protein L23 (Mrpl23), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]	Rpl23-rs; Rpl23l; rL23MRP	Rpl23-rs; Rpl23l; rL23MRP
Rattus norvegicus	RefSeq	GI_62652222-S	ILMN_267092	RGD1565498_PREDICTED	XM_001053387.1	XM_001053387.1		500843	109482033	XM_001053387.1	RGD1565498_predicted	XP_001053387.1	ILMN_1368604	0002120735	S	1396	CCAAGGCTTCCCAAGACTGGCTGCGTTGTTCTTAGCTGAGCAGTTTGTGG				7q22	PREDICTED: Rattus norvegicus similar to Hypothetical protein LOC270802 (predicted) (RGD1565498_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654458-S	ILMN_58043	LOC501067	XM_576481.1	XM_576481.1		501067	62654458	XM_576481.1	LOC501067	XP_576481.1	ILMN_1375003	0006550270	S	807	GCGTCCCAGAGGTGCGACAAAAACTCCACGAGGACTGCAGAACTTTCCGA					PREDICTED: Rattus norvegicus similar to Zinc finger CW-type PWWP domain protein 1 homolog (LOC501067), mRNA.					
Rattus norvegicus	RefSeq	GI_62653807-S	ILMN_48635	LOC363076	XM_343407.2	XM_343407.2		363076	62653807	XM_343407.2	LOC363076	XP_343408.2	ILMN_1364892	0006290594	S	46	CCGCCGTTTGGGTGAGAACACTGGCCAAGGTGGTCCAAGGGAGTGGAGCA				9q38	PREDICTED: Rattus norvegicus similar to timeless-interacting protein (LOC363076), mRNA.					
Rattus norvegicus	RefSeq	GI_62644776-S	ILMN_48454	LOC499760	XM_575096.1	XM_575096.1		499760	62644776	XM_575096.1	LOC499760	XP_575096.1	ILMN_1374872	0004670253	S	1745	GAGCAGCCTGTACAGGACTCTTGCTCCTCACCGAGGCAGCACCACTCGGT					PREDICTED: Rattus norvegicus similar to serologically defined colon cancer antigen 3 (LOC499760), mRNA.					
Rattus norvegicus	RefSeq	GI_31126960-S	ILMN_289841	TMEM23	NM_181386.1	NM_181386.1		353229	31126960	NM_181386.1	Tmem23	NP_852051.2	ILMN_1367137	0001690142	S	1869	AGCTTGGGGCTTCTATACCGGGCAGCCACCATGTCCCTTGTGTCATCCAG	1	-	236133341-236133390	1q52	Rattus norvegicus transmembrane protein 23 (Tmem23), mRNA.				Mob; MGC93062	Mob; MGC93062
Rattus norvegicus	Unigene	Rn.20036	ILMN_161019	RN.20036	Rn.20036		Rn.20036		24996994	CA506040			ILMN_1530208	0000360181	S	527	AAATCCAAAGACCTGATTTTTAAGAGCCCAGACACTGTTTAGTATTATTT					UI-R-FJ0-cqa-e-10-0-UI.s1 UI-R-FJ0 Rattus norvegicus cDNA clone UI-R-FJ0-cqa-e-10-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62660725-S	ILMN_284008	RGD1565810_PREDICTED	XM_573640.1	XM_573640.1		498399	62660725	XM_573640.1	RGD1565810_predicted	XP_573640.1	ILMN_1359411	0002360347	S	1161	CAAGGCCTGTGAGGAGAAGTTGCAGGGCTTTGTGTCAACGGGCCCTCCTC	14	+	84682008-84682057	14q21	PREDICTED: Rattus norvegicus similar to SEC14 (S. cerevisiae)-like 2 (predicted) (RGD1565810_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640921-S	ILMN_61056	RGD1305145_PREDICTED	XM_218929.3	XM_218929.3		293128	62640921	XM_218929.3	RGD1305145_predicted	XP_218929.3	ILMN_1365786	0004570397	S	1778	AGCTGGCCGTTGCTGCTGTAGATCTTCTGGTTCCTGGAGTTGGGGAGCTC				1q32	PREDICTED: Rattus norvegicus similar to CG6796-PA (predicted) (RGD1305145_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659344	ILMN_287285	CYB5R1	NM_001013126.1	NM_001013126.1		304805	61557036	NM_001013126.1	Cyb5r1	NP_001013144.1	ILMN_1650923	0004810017	S	788	AGACTGGACCTACAGCAAGGGCTTTGTTACCGCCGACATGATCCAGGAGC	13	+	47352967-47352968:47353286-47353333	13q13	Rattus norvegicus cytochrome b5 reductase 1 (Cyb5r1), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC109264; Nqo3a2	MGC109264; Nqo3a2
Rattus norvegicus	RefSeq	GI_62653246-S	ILMN_66134	LOC500946	XM_576357.1	XM_576357.1		500946	62653246	XM_576357.1	LOC500946	XP_576357.1	ILMN_1373060	0006400048	S	3116	CCTCAGACTCCGCTCTTCAAGGAGGCAGATGGCTTACAGGGAGGTCCAGT				8q11-q12	PREDICTED: Rattus norvegicus similar to hephaestin (LOC500946), mRNA.					
Rattus norvegicus	RefSeq	GI_62662343-S	ILMN_262568	LOC683302	XM_001065309.1	XM_001065309.1		683302	109503851	XM_001065309.1	LOC683302	XP_001065309.1	ILMN_1356183	0000060040	S	252	TTCCGCTGAAGGTCCGGAGGGCGAAGGTACCGAAAGCACAGTGGTCACCC					PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (LOC683302), mRNA.					
Rattus norvegicus	RefSeq	GI_62647592	ILMN_50894	LOC502837	XM_578337.1	XM_578337.1		502837	62647592	XM_578337.1	LOC502837	XP_578337.1	ILMN_1649735	0005130047	S	204	GACTCCTAAACCACTGATCACCTGGGCATCCAATAGGGAACCTGGGGTCC				4q32	PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC502837), mRNA.					
Rattus norvegicus	RefSeq	GI_62652805-S	ILMN_64817	LOC315160	XM_235506.3	XM_235506.3		315160	62652805	XM_235506.3	LOC315160	XP_235506.3	ILMN_1349564	0003290138	S	2774	GGACACTCCTGTCTGTTGGTCAGTTAGTCAAGGGACAAGGGAAGTGGAGG				7q34	PREDICTED: Rattus norvegicus similar to D15Wsu75e protein (predicted) (LOC315160), mRNA.					
Rattus norvegicus	RefSeq	GI_19173785-S	ILMN_264683	SYF2	NM_133417.1	NM_133417.1		170933	19173785	NM_133417.1	Syf2	NP_596908.1	ILMN_1374217	0004280605	S	1086	GAGTGTTCTTAGGAAGTAGAAGCTACAGTCGGGCTTTGGGGCTGTCCAGG	5	+	153715388-153715437	5q36	Rattus norvegicus SYF2 homolog, RNA splicing factor (S. cerevisiae) (Syf2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	P29; Gcipip	P29; Gcipip
Rattus norvegicus	RefSeq	GI_62652011-S	ILMN_48020	LOC362870	XM_347084.2	XM_347084.2		362870	62652011	XM_347084.2	LOC362870	XP_347085.2	ILMN_1364925	0000780687	S	1198	GCGAGGCTGTTTCTACAGGTGCCACAGAAAAATCGATGCCGAGTCACGGA					PREDICTED: Rattus norvegicus hypothetical LOC362870 (LOC362870), mRNA.					
Rattus norvegicus	RefSeq	GI_62642148-S	ILMN_51049	PDCD1LG2_PREDICTED	XM_219777.3	XM_219777.3		309304	62642148	XM_219777.3	Pdcd1lg2_predicted	XP_219777.3	ILMN_2039016	0002650204	S	1021	AGCACGTTTTATCAAGTCCCAGTGTACGGCGCCACCTAGCGTCCAGGAGG				1q52	PREDICTED: Rattus norvegicus programmed cell death 1 ligand 2 (predicted) (Pdcd1lg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641344-S	ILMN_58822	LOC309003	XM_219364.3	XM_219364.3		309003	62641344	XM_219364.3	LOC309003	XP_219364.3	ILMN_1359628	0003170484	S	5441	CCAGAAAGAGGTGGGCACAGAGGAGAGAAAGCATGACCCAGAGGTGAGGG				1q36	PREDICTED: Rattus norvegicus similar to Hypothetical protein 6820429M01 (LOC309003), mRNA.					
Rattus norvegicus	RefSeq	GI_47576146-S	ILMN_275877	OLR987	NM_001000590.1	NM_001000590.1		366810	47576146	NM_001000590.1	Olr987	NP_001000590.1	ILMN_1366378	0003710086	S	420	CCTACTGGTTCCCAGCTCCTGGGTAACTGGTTTCTTAGTCATTTTCCCCC	7	-	5978271-5978320	7q11	Rattus norvegicus olfactory receptor 987 (Olr987), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr987	Olr987
Rattus norvegicus	RefSeq	GI_47087110-S	ILMN_286389	MSH5	NM_212536.1	NM_212536.1		294252	47087110	NM_212536.1	Msh5	NP_997701.1	ILMN_1348999	0004050369	S	2543	AAAGAGGTCTCAGACTCGATCCGCAGCGGGAAGCCCGTCAAGCCCATGCA	20	+	3860993-3860998:3861397-3861440	20p12	Rattus norvegicus mutS homolog 5 (E. coli) (Msh5), mRNA.	A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence ISS]; A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	A system for the correction of errors introduced during DNA replication when an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination [goid 6298] [evidence IEA]; Progression through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells [goid 7127] [evidence ISS]; The cell cycle process whereby the side by side pairing and physical juxtaposition of homologous chromosomes is created at the metaphase plate [goid 7129] [evidence ISS]; The cell cycle process whereby the side by side pairing and physical juxtaposition of homologous chromosomes is created at the metaphase plate [goid 7129] [evidence IEA]; Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction [goid 7292] [evidence ISS]; Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction [goid 7292] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with double-stranded DNA containing one or more mismatches [goid 30983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27709711-S	ILMN_59670	LOC302797	XM_229115.1	XM_229115.1		302797	27709711	XM_229115.1	LOC302797	XP_229115.1	ILMN_1352784	0004850059	S	50	CAGAGACCCTAGGGGATCCTCAAGCAAACCACGTAGAAAAGGGCAGTGGT				Xq35	PREDICTED: Rattus norvegicus similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (HSP-65) (LOC302797), mRNA.					
Rattus norvegicus	RefSeq	GI_62649213-S	ILMN_270488	RGD1565623_PREDICTED	XM_578472.1	XM_578472.1		502967	62649213	XM_578472.1	RGD1565623_predicted	XP_578472.1	ILMN_1351128	0001170400	S	263	AGGAGTCACGGGCTGCTTGGGATGAAACCCTCCGATTGTCATTCTGCAAA	5	+	108345965-108346014	5q32	PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (predicted) (RGD1565623_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576406-S	ILMN_285241	OLR1567	NM_001000043.1	NM_001000043.1		287970	47576406	NM_001000043.1	Olr1567	NP_001000043.1	ILMN_1368458	0006840546	S	869	GCCTGAGGAATAAGGAGGTCTTAGGAGCCATGTCAAGAATCCTTGGGACA	11	+	83619327-83619376	11q23	Rattus norvegicus olfactory receptor 1567 (Olr1567), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1567	Olr1567
Rattus norvegicus	RefSeq	GI_62658602-S	ILMN_288156	RGD1559677_PREDICTED	XM_344088.2	XM_344088.2		363890	62658602	XM_344088.2	RGD1559677_predicted	XP_344089.2	ILMN_1371528	0005130538	S	1	ATGGTCGTGCCCAACTCAGACTTCCCCTGGAGAATGTCTGAGCATGTGTT	12	+	18937874-18937923	12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (predicted) (RGD1559677_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643444-S	ILMN_48182	RGD1565414_PREDICTED	XM_227139.4	XM_227139.4		310416	109464736	XM_227139.4	RGD1565414_predicted	XP_227139.4	ILMN_1359816	0004540300	S	1100	CAAATACAAAAATACGTTCCGTGGCACAGCCGCACCCCTGCCTTGGGGGC	2	-	142392114-142392163	2q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 8030451K01 (predicted) (RGD1565414_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758309-S	ILMN_285872	LRP3	NM_053541.1	NM_053541.1		89787	16758309	NM_053541.1	Lrp3	NP_445993.1	ILMN_1370606	0004810152	S	3591	CCAGCAAAACCCACTAGGGCTGAAAACCTCCTCCATAGCACCTTCCCAGC	1	-	87711641-87711690	1q21	Rattus norvegicus low density lipoprotein receptor-related protein 3 (Lrp3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47777709	ILMN_283444	OLR883	NM_001001358.1	NM_001001358.1		288803	47777709	NM_001001358.1	Olr883	NP_001001358.1	ILMN_1649881	0003440072	S	770	TCAAGCCTTCCGCAAAGGAGGAGGTGGCCATCAACAAGGGTGTGACTGTC	7	-	2642502-2642551	7q11	Rattus norvegicus olfactory receptor 883 (Olr883), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr883	Olr883
Rattus norvegicus	RefSeq	GI_13162340-S	ILMN_48990	ARF2	NM_024150.1	NM_024150.1		79119	13162340	NM_024150.1	Arf2	NP_077064.1	ILMN_1373540	0000520427	S	1484	TGGTGGAGTTGTCACTGTGTCCCCTTGTCCAGGTCTACTGTGGGCTTTTG				10q32.1	Rattus norvegicus ADP-ribosylation factor 2 (Arf2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC114313	MGC114313
Rattus norvegicus	RefSeq	GI_24025633-S	ILMN_278086	SEC11C	NM_153628.1	NM_153628.1		266758	24025633	NM_153628.1	Sec11c	NP_705892.1	ILMN_1364198	0006760168	S	479	CCAGAACTGGCTGGAGAAGAAGGACGTGGTAGGAAGAGCTCGAGGGTTCT	18	+	62110352-62110395:62112181-62112186	18q12.1	Rattus norvegicus SEC11 homolog C (S. cerevisiae) (Sec11c), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]	Spc21	Spc21
Rattus norvegicus	RefSeq	GI_62666222-S	ILMN_63863	RGD1565576_PREDICTED	XM_577941.2	XM_577941.2		502460	109509552	XM_577941.2	RGD1565576_predicted	XP_577941.2	ILMN_1368202	0000450706	S	221	ACGAGGTTGTCCAGGAAACCATCTTGCAACTGGCTGCCACAGACTGTGTT	20	+	38266729-38266778	20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1565576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639280-S	ILMN_70095	LOC497732	XM_579578.1	XM_579578.1		497732	62639280	XM_579578.1	LOC497732	XP_579578.1	ILMN_1353028	0002450433	S	2042	AAGATTTTGGCGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCCCCGACTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053806 (LOC497732), mRNA.					
Rattus norvegicus	RefSeq	GI_62649855-S	ILMN_50988	RGD1308048_PREDICTED	XM_216543.4	XM_216543.4		298557	109475668	XM_216543.4	RGD1308048_predicted	XP_216543.3	ILMN_1356820	0004560170	S	1196	TGGAGTCCTTTCTGTGTGGGTGACCTGTGTGGGGTAAGATTGAGACCTGG	5	-	154758111-154758160	5q36	PREDICTED: Rattus norvegicus similar to HT014 (predicted) (RGD1308048_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485397-S	ILMN_276157	FCGR3A	NM_207603.1	NM_207603.1		304966	46485397	NM_207603.1	Fcgr3a	NP_997486.1	ILMN_1359086	0000520184	S	827	CTTCCCTGTGGACTTGCGACCTCACCATCTGCATCGGCACCAAGTTTGAG	13	+	86877318-86877367	13q24	Rattus norvegicus Fc fragment of IgG, low affinity IIIa, receptor (Fcgr3a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The expansion of a NK T cell population by cell division [goid 1866] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an immunoglobulin of an IgG isotype [goid 19864] [evidence TAS]	Fcgr4	Fcgr4
Rattus norvegicus	RefSeq	GI_62664812-S	ILMN_62980	KATNB1_PREDICTED	XM_214635.3	XM_214635.3		291852	62664812	XM_214635.3	Katnb1_predicted	XP_214635.3	ILMN_1351109	0006100546	S	3079	AGTGAGTTCTGTAGACTGGGAGGAAGCAGCGGTGGAGCTGGCAAACCTGG				19p13	PREDICTED: Rattus norvegicus katanin p80 (WD40-containing) subunit B 1 (predicted) (Katnb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27697622-S	ILMN_289792	RGD1562776_PREDICTED	XM_223623.1	XM_223623.1		289795	27697622	XM_223623.1	RGD1562776_predicted	XP_223623.1	ILMN_1361587	0004230309	S	23	CCGTGGGTCTCAGCAAAGGCCACAATGTGACGAAGAACCTCAGCAAGCTG	14	+	89196196-89196245	14q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (predicted) (RGD1562776_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11968091-S	ILMN_292843	SULT1B1	NM_022513.1	NM_022513.1		64305	11968091	NM_022513.1	Sult1b1	NP_071958.1	ILMN_1353589	0006510348	S	605	CATGGTTCGATCATGTTAAGAGTTGGTGGGAAAAGAGGGAAGGGCATCCC	14	+	22024978-22025027	14p21	Rattus norvegicus sulfotransferase family, cytosolic, 1B, member 1 (Sult1b1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. The largest single use of phenol is in the production of plastics, but it is also used in the synthesis of caprolactam, a precursor for nylon 6 and other man-made fibers [goid 18958] [evidence IEA]; The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. The largest single use of phenol is in the production of plastics, but it is also used in the synthesis of caprolactam, a precursor for nylon 6 and other man-made fibers [goid 18958] [evidence ISS]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence IEA]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence ISS]	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence IDA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659785-S	ILMN_289956	EXO1_PREDICTED	XM_001059185.1	XM_001059185.1		305000	109499110	XM_001059185.1	Exo1_predicted	XP_001059185.1	ILMN_1358804	0007000082	S	2221	TCTGCAACCAAGATCAAGCCGTTGGTGCCTGCCAGAGTCAGTGGCCTGAG				13q25	PREDICTED: Rattus norvegicus exonuclease 1 (predicted) (Exo1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651426-S	ILMN_63298	LOC299177	XM_234407.2	XM_234407.2		299177	62651426	XM_234407.2	LOC299177	XP_234407.2	ILMN_1350694	0006770184	S	475	TGCTGACAGACTCAGGAGAGGCCCTGAAAGAGCAAGGGCAGAGCAGGTCA					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC299177), mRNA.					
Rattus norvegicus	RefSeq	GI_62654647-S	ILMN_68216	MOCS1_PREDICTED	XM_236911.4	XM_236911.4		301221	109485691	XM_236911.4	Mocs1_predicted	XP_236911.4	ILMN_1353524	0006980082	S	1932	TGTGGTGACAGAGGTAAAGCTCATCAGTAAGACTGGAGGGCAGCGGGGGG	9	-	6760127-6760176	9q11	PREDICTED: Rattus norvegicus molybdenum cofactor synthesis 1 (predicted) (Mocs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667090-S	ILMN_282526	ZDHHC15	NM_001039101.1	NM_001039101.1		317235	84993238	NM_001039101.1	Zdhhc15	NP_001034190.1	ILMN_1362911	0001170541	S	1941	CAGTTAGCATTTGAAGACCAGGCGTGAGAGTGCATGCCCATCATCCCAGC	X	-	92569094-92569143	Xq31	Rattus norvegicus zinc finger, DHHC domain containing 15 (Zdhhc15), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence IEA]; Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence ISS]; The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence IEA]; The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence ISS]; The directed movement of a protein to a specific location [goid 45184] [evidence IEA]; The directed movement of a protein to a specific location [goid 45184] [evidence ISS]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence IEA]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642507-S	ILMN_67736	NHLRC2_PREDICTED	XM_217640.4	XM_217640.4		307986	109460269	XM_217640.4	Nhlrc2_predicted	XP_217640.3	ILMN_1365419	0003990047	S	2472	GGCAGCCTTTGCAGATAAACAGTGTCCAGCCAGCGTGTGCAGCTCCTGTG	1	+	262895185-262895234	1q55	PREDICTED: Rattus norvegicus NHL repeat containing 2 (predicted) (Nhlrc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649490-S	ILMN_296542	B4GALT2_PREDICTED	XM_001072098.1	XM_001072098.1		313536	109477088	XM_001072098.1	B4galt2_predicted	XP_001072098.1	ILMN_1364433	0000050725	S	1691	CAGGAGGGGACCAGAAGGGGTGCTGTGTTGTTTCCTGGGATCATGGGGTT				5q36	PREDICTED: Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 (predicted) (B4galt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656688-S	ILMN_63478	RGD1566204_PREDICTED	XM_573164.2	XM_573164.2		497972	109488665	XM_573164.2	RGD1566204_predicted	XP_573164.2	ILMN_1372952	0007050524	S	3371	GGGAGATGACCCCGGAGCAGTCCACAGCCCACAGGAAAGAAACCAGATGG	10	+	72005350-72005399	10q26	PREDICTED: Rattus norvegicus similar to 2700008B19Rik protein (predicted) (RGD1566204_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658579-S	ILMN_280779	RGD1307636_PREDICTED	XM_001075687.1	XM_001075687.1		363886	109496764	XM_001075687.1	RGD1307636_predicted	XP_001075687.1	ILMN_1352776	0001570292	S	1099	CAATGACAGGACAATAATGGGAGCTGGACCTGATGTGGTGGCACAGCCCT				12q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC40499 (predicted) (RGD1307636_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576160-S	ILMN_293442	OLR1369	NM_001000494.1	NM_001000494.1		302958	47576160	NM_001000494.1	Olr1369	NP_001000494.1	ILMN_1370704	0006940324	S	418	CTCTGTGCCCTTCTTGTTGTGGGGTCATGGATCATAGCCAATCTCAACTG	10	-	12376413-12376462	10q12	Rattus norvegicus olfactory receptor 1369 (Olr1369), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1369	Olr1369
Rattus norvegicus	RefSeq	GI_62661268-S	ILMN_48650	DLG7_PREDICTED	XM_223937.3	XM_223937.3		289997	62661268	XM_223937.3	Dlg7_predicted	XP_223937.3	ILMN_1353258	0006040609	S	2312	GGACACCAGACAGCAAGATCGAGGCCGACAGTTCTCCTTTGGCGGAAAGA				15p14	PREDICTED: Rattus norvegicus discs, large homolog 7 (Drosophila) (predicted) (Dlg7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649727-S	ILMN_67152	LCK_MAPPED	XM_232763.4	XM_232763.4		313050	109475543	XM_232763.4	Lck_mapped	XP_232763.2	ILMN_1356341	0002320402	S	1797	CGACTCGGCACGTGAAGCCTGTGCGTGTGCCATACATAGCCGTTTTTGTC	5	-	148707789-148707838	5q36	PREDICTED: Rattus norvegicus lymphocyte protein tyrosine kinase (mapped) (Lck_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_51948535	ILMN_273976	EIF3D	NM_001004283.1	NM_001004283.1		362952	51948535	NM_001004283.1	Eif3d	NP_001004283.1	ILMN_1650977	0002100494	S	1613	CCTCAAGGACCCCAACAAGCAGGTCATCCGAGTCTACAGCTTGCCTGATG	7	-	115877710-115877759	7q34	Rattus norvegicus eukaryotic translation initiation factor 3, subunit D (Eif3d), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence IEA]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93918	MGC93918
Rattus norvegicus	RefSeq	GI_62659683-S	ILMN_264493	UCK2	XM_001076056.1	XM_001076056.1		171570	109498990	XM_001076056.1	Uck2	XP_001076056.1	ILMN_1366779	0003450239	S	838	GGTGCTCTTTGAAGGGATCCTAGCCTTCTATTCCCAGGAGGTCCGAGACC					PREDICTED: Rattus norvegicus uridine-cytidine kinase 2 (Uck2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The removal of one or more ubiquitin moieties from a protein [goid 16579] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + uridine = ADP + UMP [goid 4849] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56912228-A	ILMN_280551	KRT1-5	NM_001008759.1	NM_001008759.1		287698	56912228	NM_001008759.1	Krt1-5	NP_001008759.1	ILMN_1376813	0005340594	S	1300	TGCACCCCAGCTTCTCAAGTCAGCACCCAGATCCGCACCATCACTGAGGA	10	-	89041769-89041818	10q32.1	Rattus norvegicus keratin complex 1, acidic, gene 5 (Krt1-5), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Ka31	Ka31
Rattus norvegicus	RefSeq	GI_62659222-S	ILMN_284642	PTPN4	XM_001053943.1	XM_001053943.1		246116	109498515	XM_001053943.1	Ptpn4	XP_001053943.1	ILMN_1374131	0006860133	S	2735	TGCAGTGCTGGAATAGGAAGGACTGGGGTTCTCATCACTATGGAAACTGC				13q11	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 4 (Ptpn4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA];  [goid 4726] [evidence IEA];  [goid 4726] [evidence IDA];  [goid 4726] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655593-S	ILMN_272845	MPV17L_PREDICTED	XM_001075775.1	XM_001075775.1		360463	109489577	XM_001075775.1	Mpv17l_predicted	XP_001075775.1	ILMN_1371003	0006040044	S	568	AGGTCCCCAGAGAAGTGAGGTGTCCAGGACTCCCTTCCTAGGACGCAGTT				10q11	PREDICTED: Rattus norvegicus Mpv17 transgene, kidney disease mutant-like (predicted) (Mpv17l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641029-S	ILMN_66104	FCHSD2_PREDICTED	XM_218965.4	XM_218965.4		308864	109459117	XM_218965.4	Fchsd2_predicted	XP_218965.3	ILMN_1364742	0005050731	S	4154	AATAACCCTTCTCTCCAGGCCGAATAACCCGGCATCACCGTGCACAGGTC	1	+	158782075-158782124	1q32	PREDICTED: Rattus norvegicus FCH and double SH3 domains 2 (predicted) (Fchsd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577334-S	ILMN_263641	OLR713	NM_001000360.1	NM_001000360.1		295907	47577334	NM_001000360.1	Olr713	NP_001000360.1	ILMN_1348827	0004060026	S	894	GCTGTGGGGTAAAATGTTCACTAAAGACATAAAAAGAGCTTCTCCTCACT	3	-	74101566-74101615	3q24	Rattus norvegicus olfactory receptor 713 (Olr713), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr713	Olr713
Rattus norvegicus	RefSeq	GI_60223070-S	ILMN_269224	PQCP	NM_001012470.1	NM_001012470.1		314329	60223070	NM_001012470.1	Pqcp	NP_001012488.1	ILMN_1363974	0005700377	S	2032	CACCCGGGCATGGACCAAGTGCACCCCCAAAACATTCCGGATTCCCCTAT	6	-	111007224-111007273	6q31	Rattus norvegicus polyglutamine-containing protein (Pqcp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62646659-I	ILMN_52526	KLHL7_PREDICTED	XM_575329.1	XM_575329.1		362303	62646659	XM_575329.1	Klhl7_predicted	XP_575329.1	ILMN_1375533	0002030176	S	265	TGGCTGGAGAAGGGAACTCAAGGAAGTCCAGGTTTTCTGGCAGTCCGTGG				4q11	PREDICTED: Rattus norvegicus kelch-like 7 (Drosophila) (predicted) (Klhl7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661736-S	ILMN_58426	LOC498544	XM_573818.1	XM_573818.1		498544	62661736	XM_573818.1	LOC498544	XP_573818.1	ILMN_1356629	0003780091	S	665	CCGGTCTGAGGAATTGCAACACTACACCCCAGACATGGAGAGTTCAGCGC					PREDICTED: Rattus norvegicus similar to LRRGT00033 (LOC498544), mRNA.	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres [goid 19028] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process by which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome [goid 15074] [evidence IEA]; A late phase of viral replication during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed [goid 19068] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters [goid 4523] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254774-S	ILMN_277215	JUNB	NM_021836.2	NM_021836.2		24517	40254774	NM_021836.2	Junb	NP_068608.2	ILMN_1350784	0006550400	S	1610	TGGTACTCAGCCTGTGGGGATACTAGGGAGGAACCTCCGCCCCCTGCCCT	19	+	24833145-24833194	19q11	Rattus norvegicus jun B proto-oncogene (Junb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter during mitosis [goid 46022] [evidence IDA]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother [goid 60136] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642767-S	ILMN_60234	LOC497748	XM_579551.1	XM_579551.1		497748	62642767	XM_579551.1	LOC497748	XP_579551.1	ILMN_1357799	0003120377	S	456	ACCTGGCCATCGCGGATCTCCTTTTCTGTGTCACGCTGCCGTTTAAGATT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053313 (LOC497748), mRNA.					
Rattus norvegicus	RefSeq	GI_54262168-S	ILMN_292420	MARCKSL1	NM_030862.2	NM_030862.2		81520	54262168	NM_030862.2	Marcksl1	NP_110489.1	ILMN_1362985	0000360288	S	1045	CCAAGCCCCATCCCCGCTGAAGGCAACTGCTGGGTTTCCAATTCTTTTCC	5	+	148671865-148671914	5q36	Rattus norvegicus MARCKS-like 1 (Marcksl1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IDA]	Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	F52; MGC93399; Mlp	F52; MGC93399; Mlp
Rattus norvegicus	RefSeq	GI_62654663-S	ILMN_273587	TFEB	NM_001025707.1	NM_001025707.1		316214	71043629	NM_001025707.1	Tfeb	NP_001020878.1	ILMN_1352113	0002640156	S	1888	GGCGGCAGTCCTATGATGGGGAAGGACAGGGGTGAGGCAGAAGAGAAATA	9	-	8665389-8665438	9q12	Rattus norvegicus transcription factor EB (Tfeb), mRNA.				MGC116240	MGC116240
Rattus norvegicus	RefSeq	GI_47576692-S	ILMN_270947	OLR847	NM_001000403.1	NM_001000403.1		298045	47576692	NM_001000403.1	Olr847	NP_001000403.1	ILMN_1360984	0005570632	S	593	CCATGGTGATATCAAATATGGCTTTCCTGGTTCTTCCACTACTACTCATC	5	-	70182025-70182074	5q24	Rattus norvegicus olfactory receptor 847 (Olr847), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr5-70187780-70186827_ORF; Olr847	ratchr5-70187780-70186827_ORF; Olr847
Rattus norvegicus	RefSeq	GI_47577822-S	ILMN_268628	OLR1218	NM_001000488.1	NM_001000488.1		302087	47577822	NM_001000488.1	Olr1218	NP_001000488.1	ILMN_1373443	0006130575	S	688	GCAGAAGGTCGCTCAAAAGCCTTCAGTACCTGTGGCTCCCATGTAGCAGC	8	+	40323486-40323535	8q21	Rattus norvegicus olfactory receptor 1218 (Olr1218), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-40331565-40332497_ORF; Olr1218	ratchr8-40331565-40332497_ORF; Olr1218
Rattus norvegicus	RefSeq	GI_62641109-S	ILMN_69920	LOC361623	XM_341901.2	XM_341901.2		361623	62641109	XM_341901.2	LOC361623	XP_341902.2	ILMN_1361627	0004010711	S	7584	ACCTTAGGGATGGATCAAGAGGTGGAGTGGGCTATGGAGAGACAGTTCCC				1q33	PREDICTED: Rattus norvegicus similar to transcriptional intermediary factor 1 delta (LOC361623), mRNA.					
Rattus norvegicus	Unigene	Rn.58724	ILMN_160576	WNT5B	Rn.58724		Rn.58724		62648091	XM_342747	Wnt5b		ILMN_1530434	0002030731	S	77	TTCTGTTGTGGACCCAGGTCAAACGTATTTCCTATACCAACGGTCTAAAA					PREDICTED: Rattus norvegicus wingless-related MMTV integration site 5B (Wnt5b),	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645660-I	ILMN_267811	LOC691929	XM_001080153.1	XM_001080153.1		691929	109468709	XM_001080153.1	LOC691929	XP_001080153.1	ILMN_1375694	0005360279	S	2024	TCTCAGAGCCGGTTGAGGACTGCGTGCTGACCTTGGAAGGAAGTGGTCTC	3	-	107835249-107835298	3q35	PREDICTED: Rattus norvegicus similar to transglutaminase 5 (LOC691929), mRNA.					
Rattus norvegicus	RefSeq	GI_62659067-S	ILMN_269301	ULK1_MAPPED	XM_001080656.1	XM_001080656.1		360827	109497551	XM_001080656.1	Ulk1_mapped	XP_001080656.1	ILMN_1362810	0006660347	S	5088	CACCAGGGAGGCTAGTGCAGGGGTTCCTTACCCACCACCTGGTTCCTAAA				12q16	PREDICTED: Rattus norvegicus unc-51-like kinase 1 (mapped) (Ulk1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62662426-S	ILMN_271773	RGD1566239_PREDICTED	XM_001067908.1	XM_001067908.1		306348	109503953	XM_001067908.1	RGD1566239_predicted	XP_001067908.1	ILMN_1367433	0000540670	S	488	TGCAGGAACTCAGGTTTGATGCCGAATCTGCCGAGTGAGGGTGGCTCCCC				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810428I15 (predicted) (RGD1566239_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880712-S	ILMN_264199	RGD1560891_PREDICTED	XR_008422.1	XR_008422.1		296864	109512020	XR_008422.1	RGD1560891_predicted		ILMN_1362442	0000430088	S	2042	GTACAGCCGACTCCTACGGATACCACTCCTACCCCTTAGGTAACAGCCTC				Xq31	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1560891_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981653-S	ILMN_262657	THY1	NM_012673.1	NM_012673.1		24832	6981653	NM_012673.1	Thy1	NP_036805.1	ILMN_1367716	0004060706	S	254	CCGAGCACACTTACCGCTCCCGCGTCAACCTTTTCAGTGACCGCTTTATC	8	+	47031060-47031109	8q22	Rattus norvegicus Thy-1 cell surface antigen (Thy1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane, with the bulk of the gene product located on the side opposite to the side that faces the cytoplasm. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 31362] [evidence IEA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IDA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence TAS]; Any process that activates or increases the activity of a GTPase [goid 43547] [evidence IDA]; The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence NAS]; Development of a cone cell, one of the sensory cells in the eye that reacts to the presence of light. Cone cells contain the photopigment iodopsin or cyanopsin and are responsible for photopic (daylight) vision [goid 46549] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50860] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51281] [evidence IDA]	Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence IDA]; Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes [goid 34235] [evidence IDA]	CD7	CD7
Rattus norvegicus	RefSeq	GI_9910323-S	ILMN_68250	RGD708545	NM_020080.2	NM_020080.2		56769	77157786	NM_020080.2	RGD708545	NP_064465.1	ILMN_1370444	0004210440	S	1009	CTGGATGCTGGAACCTAGGATAGAGATTGTTGTGGTGGGCACCGGAAACA	8	-	113612292-113612319:113612403-113612424	8q32	Rattus norvegicus nuclear protein E3-3 (RGD708545), transcript variant 1, mRNA.					
Rattus norvegicus	RefSeq	GI_62651824-S	ILMN_61524	RGD1564020_PREDICTED	XM_234834.3	XM_234834.3		299555	109480322	XM_234834.3	RGD1564020_predicted	XP_234834.3	ILMN_1355411	0002370609	S	2828	TCGGACTCCAGAACCTCTGCCACTCCTACGAAAGCTGTGCCGACTCACAA	7	-	13894396-13894445	7q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932411A10 (predicted) (RGD1564020_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659352-S	ILMN_275595	RGD1560339_PREDICTED	XM_001062538.1	XM_001062538.1		498233	109498665	XM_001062538.1	RGD1560339_predicted	XP_001062538.1	ILMN_1374325	0006650500	S	3268	AGGAGGAAAGCAAAAGACAGTGAAGGCTGTGGGAGGCTGACAGAGTTGCG				13q13	PREDICTED: Rattus norvegicus similar to VTS20631 (predicted) (RGD1560339_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641836-S	ILMN_60963	LOC293711	XM_219546.3	XM_219546.3		293711	62641836	XM_219546.3	LOC293711	XP_219546.3	ILMN_1367326	0005360398	S	734	CAATGACCTCAGATACGGTGTGCCCAGGAGCCAACAGGAACCTACTCCAG				1q43	PREDICTED: Rattus norvegicus similar to H-rev107-like protein 5 (predicted) (LOC293711), mRNA.					
Rattus norvegicus	RefSeq	GI_62651782-S	ILMN_59374	SHC2_PREDICTED	XM_234904.3	XM_234904.3		314612	62651782	XM_234904.3	Shc2_predicted	XP_234904.3	ILMN_1357475	0003520561	S	2288	AGCTGTCGCCTGCCTGGACCTTCAACTGTCATTAGACACAGGGTTGAGCG				7q11	PREDICTED: Rattus norvegicus src homology 2 domain-containing transforming protein C2 (predicted) (Shc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506530-S	ILMN_285328	CYP2F4	NM_019303.1	NM_019303.1		54246	9506530	NM_019303.1	Cyp2f4	NP_062176.1	ILMN_1371879	0006510091	S	1503	GACTGCTCTGGCCCTCTTCCAGGGGTTTCACTGTTGTGGGCCTCCATTGA	1	+	82204587-82204629	1q21	Rattus norvegicus cytochrome P450, family 2, subfamily f, polypeptide 4 (Cyp2f4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; The chemical reactions and pathways involving naphthalene, a fused ring bicyclic aromatic hydrocarbon commonly found in crude oil and oil products. Naphthalene is familiar as the compound that gives mothballs their odor; it is used in the manufacture of plastics, dyes, solvents, and other chemicals, as well as being used as an antiseptic and insecticide [goid 18931] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp2f1; CYP4502F4; Cyp2f2	Cyp2f1; CYP4502F4; Cyp2f2
Rattus norvegicus	RefSeq	GI_62666768-S	ILMN_274510	RGD1566031_PREDICTED	XM_001065707.1	XM_001065707.1		302656	109511687	XM_001065707.1	RGD1566031_predicted	XP_001065707.1	ILMN_1356501	0002970524	S	5361	GCTGAGGCAGCCACTGGCAAGACCACTGGGGATCCTAGTATTGGACTATC				Xq21	PREDICTED: Rattus norvegicus similar to KIAA0316 protein (predicted) (RGD1566031_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662746-S	ILMN_56694	LOC364607	XM_344527.2	XM_344527.2		364607	62662746	XM_344527.2	LOC364607	XP_344528.2	ILMN_1369331	0004230129	S	653	CCAGTATGGAGAGAAGTATGCAACTGAGAGGGGCCAAGGTGGAGAAGAAG				16q12.2	PREDICTED: Rattus norvegicus similar to Histone H2B 291B (LOC364607), mRNA.					
Rattus norvegicus	RefSeq	GI_62639805-S	ILMN_282440	RGD1560885_PREDICTED	XR_009423.1	XR_009423.1		499154	109462003	XR_009423.1	RGD1560885_predicted		ILMN_1353196	0003840377	S	563	TCAATGACCCCTCTGGAAAGCTGTGTCATGATGGCCATTGGACAGCAGAG				1q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1560885_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657305-S	ILMN_265569	RGD1563331_PREDICTED	XM_001081655.1	XM_001081655.1		303660	109492152	XM_001081655.1	RGD1563331_predicted	XP_001081655.1	ILMN_1349284	0003940193	S	721	GCTATCCCACTGCATAGGCTGGCCACCAAATACCGAGTAGCATCCTTGCA				10q32.2	PREDICTED: Rattus norvegicus similar to CG1841-PA, isoform A (predicted) (RGD1563331_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657303-S	ILMN_265569	RGD1563331_PREDICTED	XM_001081655.1	XM_001081655.1		303660	109492152	XM_001081655.1	RGD1563331_predicted	XP_001081655.1	ILMN_1373634	0006900019	S	1420	TGACGGGTAGCCAGCGCGGGGAGAAGAGCACGTTCCAGGTAATCCGACGA				10q32.2	PREDICTED: Rattus norvegicus similar to CG1841-PA, isoform A (predicted) (RGD1563331_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643906	ILMN_48268	CAR14_PREDICTED	XM_342297.2	XM_342297.2		361998	62643906	XM_342297.2	Car14_predicted	XP_342298.2	ILMN_1649965	0000870112	S	1223	GAGAGATACCACCTCTCTATACACGAATACCAGAGAAGCGAGGACCCCAG					PREDICTED: Rattus norvegicus carbonic anhydrase 14 (predicted) (Car14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662676-S	ILMN_51960	RGD1564538_PREDICTED	XM_214351.4	XM_214351.4		290755	109503393	XM_214351.4	RGD1564538_predicted	XP_214351.4	ILMN_1372810	0000870215	S	2168	ACGAGAGGAACACCCTGGAATTTGAGATGCGGACTCTTCAGCGAGACTAC	16	-	49604150-49604199	16q11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1564538_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650788-S	ILMN_279580	TXNDC1	NM_001024800.1	NM_001024800.1		362751	67078421	NM_001024800.1	Txndc1	NP_001019971.1	ILMN_1371874	0001570136	S	642	GCAGATTGCCTTTGCCCTTCAAAGAGGCGCAGACCACAGCAACAGCCTAC	6	+	92570077-92570126	6q24	Rattus norvegicus thioredoxin domain containing 1 (Txndc1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction that interconverts reduced sulfide groups and oxidized disulfide bonds in a substrate [goid 15036] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643402-S	ILMN_68876	RGD1565811_PREDICTED	XM_342242.3	XM_342242.3		361943	109464820	XM_342242.3	RGD1565811_predicted	XP_342243.3	ILMN_1349590	0007100372	S	3721	GCATGGCACCCTGGAGAGGAAGGAGCTGGACGGATTGCTGTCTAATACAC	2	+	132903609-132903658	2q26	PREDICTED: Rattus norvegicus similar to OL-protocadherin isoform (predicted) (RGD1565811_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718109-S	ILMN_66027	LOC304438	XM_222128.3	XM_222128.3		304438	62718109	XM_222128.3	LOC304438	XP_222128.3	ILMN_1362024	0005700100	S	521	TCCTCCAGCAGAGGTGAAGTCTGACATTGACAGCGACATCTTAACCGGTC					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC304438), mRNA.					
Rattus norvegicus	RefSeq	GI_62643624-S	ILMN_67392	RGD1564291_PREDICTED	XM_227060.4	XM_227060.4		310341	109464785	XM_227060.4	RGD1564291_predicted	XP_227060.4	ILMN_1374589	0007050148	S	4953	GGCACCAATGTCATCTCCATAGAAGCAGCCAGCCCCAGAGGGTCAGAAGC	2	+	125852397-125852446	2q25	PREDICTED: Rattus norvegicus similar to FAT tumor suppressor homolog 4 (predicted) (RGD1564291_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643370-S	ILMN_67392	RGD1564291_PREDICTED	XM_227060.4	XM_227060.4		310341	109464785	XM_227060.4	RGD1564291_predicted	XP_227060.4	ILMN_1375117	0000450142	S	15614	CCCCAGAACACTGCCACCTTTCTCTTCTGGAATAACGTTCTCAGCGCACT	2	+	125975142-125975191	2q25	PREDICTED: Rattus norvegicus similar to FAT tumor suppressor homolog 4 (predicted) (RGD1564291_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643368	ILMN_67392	RGD1564291_PREDICTED	XM_227060.4	XM_227060.4		310341	109464785	XM_227060.4	RGD1564291_predicted	XP_227060.4	ILMN_1649773	0000840348	S	12410	CGATTTTGTGGGCTGTATAATGGAGTTCGCTGTGAATGGACGGCCCCTGG	2	+	125963221-125963270	2q25	PREDICTED: Rattus norvegicus similar to FAT tumor suppressor homolog 4 (predicted) (RGD1564291_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662380-S	ILMN_267055	RGD1311565	NM_001024971.1	NM_001024971.1		290626	68163371	NM_001024971.1	RGD1311565	NP_001020142.1	ILMN_1369261	0000430647	S	582	AAGACGGGATCTGCAGGAGACCATGGACATGATGGAGTCGCAGACGCTGC	16	-	18424163-18424206:18424501-18424506	16p14	Rattus norvegicus similar to 2410004L22Rik protein (RGD1311565), mRNA.				MGC108884	MGC108884
Rattus norvegicus	RefSeq	GI_62640780-S	ILMN_53903	MAN2A2_PREDICTED	XM_218816.4	XM_218816.4		308757	109458970	XM_218816.4	Man2a2_predicted	XP_218816.4	ILMN_1370247	0006650184	S	3211	GCGGCTGATGCTGCTCTCATCCTACACCGCAAGGGTTTTGACTGTGGCCT	1	-	136170475-136170524	1q31	PREDICTED: Rattus norvegicus mannosidase 2, alpha 2 (predicted) (Man2a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654044-S	ILMN_292192	BCKDHB	XM_001062965.1	XM_001062965.1		29711	109485077	XM_001062965.1	Bckdhb	XP_001062965.1	ILMN_1356277	0005290440	S	1023	CAGGCGGCTTTGCCTCTGAGATCAGCTCCACGGTCCAGGAAGAATGTTTC				8q31	PREDICTED: Rattus norvegicus branched chain keto acid dehydrogenase E1, beta polypeptide (Bckdhb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity [goid 5947] [evidence ISS]; Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity [goid 5947] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	 [goid 3826] [evidence ISS];  [goid 3826] [evidence IEA]; Catalysis of the reaction: 3-methyl-2-oxobutanoate + lipoamide = S-(2-methylpropanoyl)dihydrolipoamide + CO2 [goid 3863] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62718169-S	ILMN_69070	LOC363343	XM_343681.2	XM_343681.2		363343	62718169	XM_343681.2	LOC363343	XP_343682.2	ILMN_1352404	0000520181	S	445	AGATGACCTTCTCTAGCAACCTGCACAGCCGGCTCCTGATGGACCAGGCA					PREDICTED: Rattus norvegicus similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC363343), mRNA.					
Rattus norvegicus	RefSeq	GI_16758595-S	ILMN_266305	ZP3	NM_053762.1	NM_053762.1		114639	16758595	NM_053762.1	Zp3	NP_446214.1	ILMN_1350847	0006660717	S	1162	AGGGCTGGACCTCTTCTGCTCAAACCTCTGTGGCTCTCGGCTTAGGCTTG	12	-	21805854-21805903	12q12	Rattus norvegicus zona pellucida glycoprotein 3 (sperm receptor) (Zp3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities [goid 32190] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646154-S	ILMN_48098	LOC502668	XM_578164.1	XM_578164.1		502668	62646154	XM_578164.1	LOC502668	XP_578164.1	ILMN_1366949	0005130164	S	1079	GTCTGCGCCTGGTCTGAAGGGCCTGAATCCCATTTATGACGGGAAGGAGG					PREDICTED: Rattus norvegicus similar to Cytochrome c, somatic (LOC502668), mRNA.					
Rattus norvegicus	RefSeq	GI_62642348-S	ILMN_59971	CWF19L1_PREDICTED	XM_345035.3	XM_345035.3		365465	109460159	XM_345035.3	Cwf19l1_predicted	XP_345036.2	ILMN_1362589	0006420576	S	1622	AGGAGGCCCTGGCTCGCCGCTTCAGGAAAGACTTTGAACCCTTTGACTTC	1	+	249119511-249119560	1q54	PREDICTED: Rattus norvegicus CWF19-like 1, cell cycle control (S. pombe) (predicted) (Cwf19l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640947-S	ILMN_283568	WNT11	XM_001065413.1	XM_001065413.1		140584	109462474	XM_001065413.1	Wnt11	XP_001065413.1	ILMN_1358673	0004050279	S	1849	AGATGCCAGATGCCAGGCGTGGGAGGCGGCTTGTGCTGTGACTCCACTTG				1q32	PREDICTED: Rattus norvegicus wingless-type MMTV integration site family, member 11 (Wnt11), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079132-S	ILMN_270728	ATP6V1C2	NM_001014199.1	NM_001014199.1		362802	62079132	NM_001014199.1	Atp6v1c2	NP_001014221.1	ILMN_1371030	0003120048	S	1366	TCCCCTACGTGTACTTCCACATCGACCTCAGCCTTCTTGACTAGCTGGCC					Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit C2 (Atp6v1c2), mRNA.	A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651276-S	ILMN_271876	LOC299339	XM_001071736.1	XM_001071736.1		299339	109479954	XM_001071736.1	LOC299339	XP_001071736.1	ILMN_1369294	0002970735	S	1391	TCATCGCCAACATCAACAACTGCCTGTCCTTCCGGACTTCTGTGGAACAG				6q32	PREDICTED: Rattus norvegicus similar to Tumor necrosis factor, alpha-induced protein 2 (Primary response gene B94 protein) (LOC299339), mRNA.					
Rattus norvegicus	RefSeq	GI_62660313-S	ILMN_62430	LOC498344	XM_573577.1	XM_573577.1		498344	62660313	XM_573577.1	LOC498344	XP_573577.1	ILMN_1349341	0002340037	S	862	TCTACCATGGCATTCCTATTGTTGCCAAAGGAGCCGCTGTTAAAGTCGAC				14p21	PREDICTED: Rattus norvegicus similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGT) (UDPGTR-2) (LOC498344), mRNA.					
Rattus norvegicus	RefSeq	GI_62665896-S	ILMN_48580	BICC1_PREDICTED	XM_342126.3	XM_342126.3		361832	109509375	XM_342126.3	Bicc1_predicted	XP_342127.3	ILMN_1364036	0006350095	S	2696	AGCGGTACCTTCTGGACACGCACCTGCTATCAGCAAAGGTGGACGCGATC	20	+	18476536-18476537:18476538-18476585	20p11	PREDICTED: Rattus norvegicus bicaudal C homolog 1 (Drosophila) (predicted) (Bicc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658086-S	ILMN_47757	LOC363775	XM_577180.1	XM_577180.1		363775	62658086	XM_577180.1	LOC363775	XP_577180.1	ILMN_1359012	0002850064	S	191	GGCCTTTGGAGAGCAGCTTGAAGAGAAGCCTGTTTTACAGATGATCGCAC					PREDICTED: Rattus norvegicus similar to Prostacyclin synthase (Prostaglandin I2 synthase) (LOC363775), mRNA.					
Rattus norvegicus	RefSeq	GI_62645481-S	ILMN_296993	DEPDC7	NM_001029916.1	NM_001029916.1		295971	71361616	NM_001029916.1	Depdc7	NP_001025087.1	ILMN_1349578	0005080685	S	835	GTGGATCTCTGCGGCCATTGACTGCTTGGAGTATCTTCCTGACCAGATGG	3	-	90057635-90057684	3q32	Rattus norvegicus DEP domain containing 7 (Depdc7), mRNA.		A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]		MGC114389	MGC114389
Rattus norvegicus	RefSeq	Rn.137442	ILMN_293914	LOC681996	XM_001062172.1	XM_001062172.1		681996	109479739	XM_001062172.1	LOC681996	XP_001062172.1	ILMN_1530325	0004590128	S	1416	ATTTCTTATAATCTGTGTTGACTGGCAGCAGTTGATTTGAACGTTTTGAA					PREDICTED: Rattus norvegicus similar to AHA1, activator of heat shock 90kDa protein ATPase homolog 1, transcript variant 2 (LOC681996), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Functions to increase the rate of ATP hydrolysis [goid 1671] [evidence IEA]; Increases the activity of a molecular chaperone [goid 30189] [evidence IEA]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643406-S	ILMN_69060	LOC499607	XM_574933.1	XM_574933.1		499607	62643406	XM_574933.1	LOC499607	XP_574933.1	ILMN_1374117	0004590438	S	2648	GGTGTACACCATCCACGGAGAGGTGATGTCCCAAAGTTCAGAGCTTTCAT				2q26	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC499607), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652274-S	ILMN_270511	RGD1310066	XM_001056644.1	XM_001056644.1		362894	109482071	XM_001056644.1	RGD1310066	XP_001056644.1	ILMN_1374319	0001660450	S	3192	GGCGGATTGGGCCAGAGCTTACCACATTATGGCTGAAGAGAGAAGCAGAC				7q22	PREDICTED: Rattus norvegicus similar to mKIAA1002 protein (RGD1310066), mRNA.					
Rattus norvegicus	RefSeq	GI_62657351-S	ILMN_273816	CASKIN2_PREDICTED	XM_001081695.1	XM_001081695.1		303678	109492244	XM_001081695.1	Caskin2_predicted	XP_001081695.1	ILMN_1372347	0006020368	S	706	CTCAACATCAACTACCAGGATGCCGATGGATTCTCTGCCCTCCACCATGC				10q32.3	PREDICTED: Rattus norvegicus cask-interacting protein 2 (predicted) (Caskin2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645321-S	ILMN_53120	ITGA4_MAPPED	XM_230033.4	XM_230033.4		311144	109468353	XM_230033.4	Itga4_mapped	XP_230033.4	ILMN_1351118	0005690400	S	3462	TGCACTTATGGTTTTGTGACCCACTCTGTCTTAGTGCTGGGGAAGTCTGC	3	+	62097144-62097193	3q24	PREDICTED: Rattus norvegicus integrin alpha 4 (mapped) (Itga4_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_27545367-S	ILMN_265037	V1RA12	NM_173296.1	NM_173296.1		297439	27545367	NM_173296.1	V1ra12	NP_775418.1	ILMN_1368051	0002190358	S	1012	GTAGTGGACATCTATGCCACAGTCAGCCCTTTTGTGTTTATGAGCACTGG	4	+	124162067-124162116	4q34	Rattus norvegicus vomeronasal 1 receptor, A12 (V1ra12), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	Vnr3; V1ra12; Vn3	Vnr3; V1ra12; Vn3
Rattus norvegicus	RefSeq	GI_54262162-S	ILMN_268291	BET1	NM_019251.2	NM_019251.2		29631	54262162	NM_019251.2	Bet1	NP_062124.1	ILMN_1357381	0006980195	S	756	GGGAGAGCAGAAGAATGCCAGAGAACTTGGAATCAGCCTTTGAGGAGTGT	4	-	28941697-28941746	4q13	Rattus norvegicus blocked early in transport 1 homolog (S. cerevisiae) (Bet1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IMP]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IPI]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25 [goid 31201] [evidence TAS]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IPI]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IDA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72488	MGC72488
Rattus norvegicus	RefSeq	GI_62643256-S	ILMN_271208	LOC499584	XM_001054489.1	XM_001054489.1		499584	109464639	XM_001054489.1	LOC499584	XP_001054489.1	ILMN_1351033	0004050025	S	493	GAGGTGGAGGAAAACCTGAGTGGAAATGATGCCATGTGCCCTCTGATGGG	2	+	110381584-110381633	2q24	PREDICTED: Rattus norvegicus LRRGT00202 (LOC499584), mRNA.					
Rattus norvegicus	RefSeq	GI_62656470-S	ILMN_68474	LOC501706	XM_577111.2	XM_577111.2		501706	109488356	XM_577111.2	LOC501706	XP_577111.1	ILMN_1355808	0002650711	S	562	CGGCAGGTATCAAGGAACTAGTAACTTTAGGGAGAGTTTGGTGTCTCTGG	10	+	57928471-57928520	10q24	PREDICTED: Rattus norvegicus hypothetical protein LOC501706 (LOC501706), mRNA.					
Rattus norvegicus	RefSeq	GI_62659244-S	ILMN_55869	RGD1564507_PREDICTED	XM_344134.3	XM_344134.3		363974	109497796	XM_344134.3	RGD1564507_predicted	XP_344135.3	ILMN_1374060	0001570671	S	5389	GAATATGCTGAGGATGCAGTGCCAAGTGAGCCCCTTTCAGGATGGAGGGG	13	-	38506771-38506820	13q11	PREDICTED: Rattus norvegicus similar to Nck-associated protein 5 (predicted) (RGD1564507_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663413-S	ILMN_299971	PAK1IP1	NM_001037356.1	NM_001037356.1		361232	82654215	NM_001037356.1	Pak1ip1	NP_001032433.1	ILMN_1375131	0000610524	S	1114	GCAGCCAGCAGCCAACTAAAAGAAATAGCCCAGCGCCAGCCAAGAAGAGG	17	-	29710743-29710792	17p12	Rattus norvegicus PAK1 interacting protein 1 (Pak1ip1), mRNA.					
Rattus norvegicus	RefSeq	GI_62656992-A	ILMN_267997	KRT13	NM_001004021.1	NM_001004021.1		287699	51591908	NM_001004021.1	Krt13	NP_001004021.1	ILMN_1376259	0005670433	S	863	TCCAGGCCAAGAGTGCAGAACTGAACAAGGAAGTATCCTCCAATGCTGCC	10	-	89058769-89058808:89058917-89058926	10q32.1	Rattus norvegicus keratin 13 (Krt13), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	The process by which the anatomical structures of the tongue are generated and organized. Morphogenesis pertains to the creation of form. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech [goid 43587] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639202-S	ILMN_283392	LTBP4	XM_001077795.1	XM_001077795.1		292734	109461523	XM_001077795.1	Ltbp4	XP_001077795.1	ILMN_1353346	0003870768	S	4899	GGAGCTTCCAGAGTGCACCTAGCCTTCCTCTAGTCTGCATGTGTGTGAGG				1q21	PREDICTED: Rattus norvegicus latent transforming growth factor beta binding protein 4 (Ltbp4), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]	The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 30162] [evidence ISS]; The regulated release of hormones, substances with a specific regulatory effect on a particular organ or group of cells [goid 46879] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665134-S	ILMN_56250	LOC364991	XM_344758.2	XM_344758.2		364991	62665134	XM_344758.2	LOC364991	XP_344759.2	ILMN_1353243	0002970288	S	634	CAGATGTGATGAGAGGATTCTATAGGGGCATAGCCTCCTCATATGCTGGC				19q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330005L02 (LOC364991), mRNA.					
Rattus norvegicus	RefSeq	GI_62638580	ILMN_56636	LOC499030	XM_579904.1	XM_579904.1		499030	62638580	XM_579904.1	LOC499030	XP_579904.1	ILMN_1650769	0005720735	S	927	GGAAGTCTTGTGGAAGAGTGGGGGGAGAGTGACAAGGAAACTGGTTGGGT					PREDICTED: Rattus norvegicus LOC499030 (LOC499030), mRNA.					
Rattus norvegicus	RefSeq	GI_38454309-S	ILMN_291190	SDHD	NM_198788.1	NM_198788.1		363061	38454309	NM_198788.1	Sdhd	NP_942083.1	ILMN_1358688	0003450025	S	908	CCCCAGCTGTTGGTGGCTCTGTTTCTAGGGGACTTTTAATCAGGAGATGC	8	-	53955329-53955378	8q23	Rattus norvegicus succinate dehydrogenase complex, subunit D, integral membrane protein (Sdhd), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence ISS]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor. No reaction with quinols [goid 104] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC72971	MGC72971
Rattus norvegicus	RefSeq	GI_13928969-S	ILMN_275700	GPR88	NM_031696.1	NM_031696.1		64443	13928969	NM_031696.1	Gpr88	NP_113884.1	ILMN_1364390	0007000494	S	3871	GAATGGGAATCTGATACCTTGCCATGTTTCTGGTAGCGCTCCCGGGCTGG	2	-	212460444-212460493	2q41	Rattus norvegicus G-protein coupled receptor 88 (Gpr88), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_42558274-S	ILMN_58520	PGPEP1	NM_201988.2	NM_201988.2		290648	71534288	NM_201988.2	Pgpep1	NP_973717.1	ILMN_1350308	0006510736	S	656	GTACATCTGGGTGCCATGCTGTGAGAGGGGACACAACTGGGCTCATGGAG	16	+	19284986-19285035	16p14	Rattus norvegicus pyroglutamyl-peptidase I (Pgpep1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	PAPI	PAPI
Rattus norvegicus	RefSeq	GI_62662986-S	ILMN_63763	COL4A1	XM_214400.4	XM_214400.4		290905	109503586	XM_214400.4	Col4a1	XP_214400.3	ILMN_1360318	0005890687	S	6293	CCGACAGGTCAGGCGCAGGAGGGGAAGATCACTATGCTTGAAGTGGCGTT	16	+	83157549-83157598	16q12.5	PREDICTED: Rattus norvegicus procollagen, type IV, alpha 1 (Col4a1), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen heterotrimer containing type IV alpha chains; [alpha1(IV)]2alpha2(IV) trimers are commonly observed, although more type IV alpha chains exist and may be present in type IV trimers; type IV collagen triple helices associate to form nets within basement membranes [goid 5587] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]		The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659257-S	ILMN_267583	RGD1566400_PREDICTED	XR_007575.1	XR_007575.1		289001	109498577	XR_007575.1	RGD1566400_predicted		ILMN_1364080	0004010050	S	1508	GGGCAGGCTTAAATGGTACCCACAGTGACATGCTCAAGTCTATGCGTGGG				13q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23074 (predicted) (RGD1566400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664770-S	ILMN_299947	CAR7_PREDICTED	XM_001056926.1	XM_001056926.1		291819	109508342	XM_001056926.1	Car7_predicted	XP_001056926.1	ILMN_1372620	0003130041	S	1322	CATGCACCTCACTGCCAGGCCATTACTATAGCACCCAGATGCTGGAGGCG					PREDICTED: Rattus norvegicus carbonic anhydrase 7 (predicted) (Car7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665976-S	ILMN_274076	EIF4EBP2	NM_001033069.1	NM_001033069.1		361845	74271858	NM_001033069.1	Eif4ebp2	NP_001028241.1	ILMN_1363150	0002640687	S	410	GAACAACCTGAACAATCACGACAGGAAGCACGCAGTTGGGGATGAGGCTC	20	-	29563810-29563859	20q11	Rattus norvegicus eukaryotic translation initiation factor 4E binding protein 2 (Eif4ebp2), mRNA.		The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IEA]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of translational initiation [goid 45947] [evidence IEA]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation [goid 8190] [evidence IEA]	MGC124760	MGC124760
Rattus norvegicus	RefSeq	GI_62639581-S	ILMN_265786	RGD1565346_PREDICTED	XM_001080290.1	XM_001080290.1		499139	109461801	XM_001080290.1	RGD1565346_predicted	XP_001080290.1	ILMN_1368869	0000730750	S	1558	CATGCAGTAGACCAACCCACAGTTCTGCCAGCTTCTCACCTGTAGAAGCC				1q22	PREDICTED: Rattus norvegicus similar to expressed sequence C80587 (predicted) (RGD1565346_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666147-S	ILMN_60478	REV3L	XM_228273.4	XM_228273.4		309812	109509596	XM_228273.4	Rev3l	XP_228273.4	ILMN_1351717	0002450156	S	9487	GTCAGTGTCGGAGCCAGCCTCAGCATGTAGCCATCATCCTCAACCAGGAA	20	+	44033100-44033149	20q12	PREDICTED: Rattus norvegicus REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (Rev3l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666431-S	ILMN_52663	LOC503422	XM_578960.1	XM_578960.1		503422	62666431	XM_578960.1	LOC503422	XP_578960.1	ILMN_1366488	0000580138	S	362	TCCAAGGCCCGGGCGAAATCTCCCTGGGAGCCTGTATGGGAAAGTACCTT					PREDICTED: Rattus norvegicus similar to extraembryonic, spermatogenesis, homeobox 1-like (LOC503422), mRNA.					
Rattus norvegicus	RefSeq	GI_62658903-S	ILMN_54382	LOC288662	XM_222160.2	XM_222160.2		288662	62658903	XM_222160.2	LOC288662	XP_222160.2	ILMN_1361689	0004120577	S	593	ATGCCATGAGTCCTTCCTCGGGAGTTCTGGAAGTGTGTCTAACCCTCTCC					PREDICTED: Rattus norvegicus similar to S100 calcium binding protein A11 (calizzarin) (LOC288662), mRNA.					
Rattus norvegicus	RefSeq	GI_47577846-S	ILMN_277994	OLR1198	NM_001000436.1	NM_001000436.1		300525	47577846	NM_001000436.1	Olr1198	NP_001000436.1	ILMN_1356734	0005890010	S	392	ACACAGTCACCATGTCTCCCCAGGTTTGTTTACTCCTTTTACTAGGAGCC	8	+	39111210-39111259	8q21	Rattus norvegicus olfactory receptor 1198 (Olr1198), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1198; ratchr8-39119585-39120514_ORF	Olr1198; ratchr8-39119585-39120514_ORF
Rattus norvegicus	RefSeq	GI_13027395-S	ILMN_271410	NPVF	NM_023952.1	NM_023952.1		60570	13027395	NM_023952.1	Npvf	NP_076442.1	ILMN_1349252	0003840402	S	294	AGAAGACAGAAGAAGCCCCAGGGCACGGGCCAACATGGAGGCAGGGACCA	4	-	78888284-78888333	4q24	Rattus norvegicus neuropeptide VF precursor (Npvf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62650183-S	ILMN_295724	LOC500598	NM_001024349.1	NM_001024349.1		500598	66730494	NM_001024349.1	LOC500598	NP_001019520.1	ILMN_1374945	0002900706	S	856	CCTGAGGAGGAACGTGGGGAGCAGATGGAAGAAAAGTGTCGTCTGGGGGA	5	+	172871448-172871497	5q36	Rattus norvegicus similar to tumor necrosis factor receptor superfamily, member 18 (LOC500598), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47087102-S	ILMN_297128	RPS18	NM_213557.1	NM_213557.1		294282	47087102	NM_213557.1	Rps18	NP_998722.1	ILMN_1371064	0007050270	S	464	GCCGCAGGGGCCGTACTGTGGGTGTGTCCAAGAAGAAATGAGTCTTTGGG	20	+	5087220-5087260:5087261-5087269	20p12	Rattus norvegicus ribosomal protein S18 (Rps18), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence TAS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence NAS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]	MGC156545; Ke3	MGC156545; Ke3
Rattus norvegicus	RefSeq	GI_62652015-S	ILMN_48203	LOC500821	XM_576211.1	XM_576211.1		500821	62652015	XM_576211.1	LOC500821	XP_576211.1	ILMN_1361628	0000940537	S	696	GTGCCTACTGGTAACAACCTGTACGTCGGCACCTCCTGGATTCCACTGAG					PREDICTED: Rattus norvegicus similar to novel protein (LOC500821), mRNA.					
Rattus norvegicus	RefSeq	GI_8394135-S	ILMN_285521	RAB4B	NM_017355.1	NM_017355.1		50866	8394135	NM_017355.1	Rab4b	NP_059051.1	ILMN_1350920	0001010411	S	864	GGGCCTGGCTTTGGGGCAAGATTGAGCCACAGGGGAAAGGGGACCCCATA	1	-	82243125-82243174	1q21	Rattus norvegicus RAB4B, member RAS oncogene family (Rab4b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55926198-S	ILMN_273770	KCNE3	NM_022235.2	NM_022235.2		63883	55926198	NM_022235.2	Kcne3	NP_071571.1	ILMN_1367616	0004560397	S	1052	CAAGACCAGACTACTCAAGCTCTATCTTGGAAGGGACTTGGTGGGGGCTG	1	+	157564902-157564951	1q32	Rattus norvegicus potassium voltage-gated channel, Isk-related subfamily, gene 3 (Kcne3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43266] [evidence IMP]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA];  [goid 15459] [evidence TAS];  [goid 15459] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	MGC105432	MGC105432
Rattus norvegicus	RefSeq	GI_13928973-S	ILMN_267477	RPN2	NM_031698.1	NM_031698.1		64701	13928973	NM_031698.1	Rpn2	NP_113886.1	ILMN_1351440	0002480433	S	1817	TGAAGTACCTGGCCGTCCTGGGCACTGTGACATTTCTGGCTGGCAACCGA	3	+	148019540-148019589	3q42	Rattus norvegicus ribophorin II (Rpn2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected [goid 8250] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Vesicular particles formed from disrupted endoplasmic reticulum membranes and studded with ribosomes on the outside [goid 19718] [evidence IDA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine also occurs; this modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification [goid 18279] [evidence IEA]	Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine [goid 4579] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13591990-S	ILMN_285962	MMP2	NM_031054.1	NM_031054.1		81686	13591990	NM_031054.1	Mmp2	NP_112316.1	ILMN_1361936	0003450136	S	3181	GTTAAGGTGGTGCAGGTATCTGGGCAGCAGAAAGGGTGAAACCAGGTGGC				19p11	Rattus norvegicus matrix metallopeptidase 2 (Mmp2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IDA]; The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A developmental process, independent of morphogenetic (shape) change, that is required for a blood vessel to attain its fully functional state [goid 1955] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a blood vessel to attain its fully functional state [goid 1955] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IDA]; The regrowth of axons outside the central nervous system (outside the brain and spinal cord) following an axonal injury [goid 14012] [evidence IDA]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IDA]	Interacting selectively with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids [goid 1968] [evidence IPI]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62654684-S	ILMN_70039	TRERF1_PREDICTED	XM_236953.4	XM_236953.4		316219	109485706	XM_236953.4	Trerf1_predicted	XP_236953.4	ILMN_1363919	0005130048	S	3097	TGGATGATGATATGGTCCAGCAGTTAGGCGTCATGGACGAGGCTGAGGTG	9	-	9092790-9092839	9q12	PREDICTED: Rattus norvegicus transcriptional regulating factor 1 (predicted) (Trerf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655486-S	ILMN_49862	LOC301658	XM_213162.3	XM_213162.3		301658	62655486	XM_213162.3	LOC301658	XP_213162.3	ILMN_1356602	0005340164	S	649	AGGGCCGGTATGGAGAAGTATGGATGGCTGCAGACATTAAAGGCACCGGT					PREDICTED: Rattus norvegicus similar to bone morphogenetic protein receptor, type 1A (LOC301658), mRNA.					
Rattus norvegicus	RefSeq	GI_62656673-S	ILMN_62693	LOC497968	XM_579763.1	XM_579763.1		497968	62656673	XM_579763.1	LOC497968	XP_579763.1	ILMN_2039597	0003520189	S	312	CCTTGAGAACCTGTGTGTTAGTGCTCACTGGCCTGCAAAGGAATCTGTAC					PREDICTED: Rattus norvegicus LOC497968 (LOC497968), mRNA.					
Rattus norvegicus	RefSeq	GI_20302046-S	ILMN_288849	AMPD1	NM_138876.1	NM_138876.1		25028	20302046	NM_138876.1	Ampd1	NP_620231.1	ILMN_1359380	0003060441	S	2139	CCTGTTGGAAATGACATCCGAAGGACAAATGTGGCTCAGATTCGCATGGC	2	+	198330884-198330933	2q34	Rattus norvegicus adenosine monophosphate deaminase 1 (isoform M) (Ampd1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]; The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9168] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]	Catalysis of the reaction: AMP + H2O = IMP + NH3 [goid 3876] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RATAMPD01; Ampd01	RATAMPD01; Ampd01
Rattus norvegicus	RefSeq	GI_56090328-S	ILMN_293472	PEF1	NM_001007651.1	NM_001007651.1		297900	56090328	NM_001007651.1	Pef1	NP_001007652.1	ILMN_1362404	0005080102	S	1174	ACTGAGCGGGAGGGAGATTTGCTGGGACCAGAGCCTGGGATTCTTCAGCT	5	+	149158262-149158311	5q36	Rattus norvegicus penta-EF hand domain containing 1 (Pef1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	MGC95159	MGC95159
Rattus norvegicus	RefSeq	GI_62660746-S	ILMN_53156	GAS2L1_PREDICTED	XM_341251.3	XM_341251.3		360973	109499984	XM_341251.3	Gas2l1_predicted	XP_341252.3	ILMN_1354855	0003940673	S	2202	TTGAGCACCAGACCTCATGGGACCAGACCCCACGGGACCACATGGCACAA	14	-	85721663-85721712	14q21	PREDICTED: Rattus norvegicus growth arrest-specific 2 like 1 (predicted) (Gas2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576984-S	ILMN_290389	OLR788	NM_001000602.1	NM_001000602.1		404790	47576984	NM_001000602.1	Olr788	NP_001000602.1	ILMN_1374385	0006400358	S	503	TCTGTGGACCAAATGTGTTGGACAGCTTCTACTGTGATCTTCCCCAGTTC	3	-	97689583-97689632	3q34	Rattus norvegicus olfactory receptor 788 (Olr788), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr788	Olr788
Rattus norvegicus	RefSeq	GI_16758635-S	ILMN_275082	F11R	NM_053796.1	NM_053796.1		116479	16758635	NM_053796.1	F11r	NP_446248.1	ILMN_1351536	0001170047	S	1583	GGCTGGAACTGGTGGCTGTTAGTCACTTCATTTGGCTGGAACTACTGCAC	13	+	87393210-87393259	13q24	Rattus norvegicus F11 receptor (F11r), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]	Jam1	Jam1
Rattus norvegicus	RefSeq	GI_47087123-S	ILMN_276646	COL11A2	NM_212528.1	NM_212528.1		294279	47087123	NM_212528.1	Col11a2	NP_997693.1	ILMN_1351197	0004920619	S	5581	GGGCACTAAGAATGCTGGAACACACGGTCTCCCCTGCCTCAGGACTCCAG	20	-	4924772-4924821	20p12	Rattus norvegicus collagen, type XI, alpha 2 (Col11a2), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; A collagen heterotrimer containing type XI alpha chains in alpha1(XI)alpha2(XI)alpha3(XI) trimers; type XI collagen triple helices associate to form fibrils [goid 5592] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence TAS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IDA]; A homeostatic process involved in the maintenance of an internal equilibrium within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function [goid 1894] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]	Col11a2	Col11a2
Rattus norvegicus	RefSeq	GI_62648431-S	ILMN_68202	LOC502912	XM_578414.1	XM_578414.1		502912	62648431	XM_578414.1	LOC502912	XP_578414.1	ILMN_1367807	0003610095	S	553	GGAGGAGGACACAGTTTGGAGATCCGTTCATGAGGTCCCTTGACACCCAC					PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (LOC502912), mRNA.					
Rattus norvegicus	RefSeq	GI_62640900-S	ILMN_294030	CCDC90B	NM_001024885.1	NM_001024885.1		308820	67846043	NM_001024885.1	Ccdc90b	NP_001020056.1	ILMN_1360894	0002060079	S	1207	CAAAGCCTGGCTTGAGATAGAAGTGCACTTGGTCCTTATCCTCTGACAAC	1	+	149423843-149423892	1q32	Rattus norvegicus coiled-coil domain containing 90B (Ccdc90b), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC114546	MGC114546
Rattus norvegicus	RefSeq	GI_54635055-A	ILMN_283626	OLR990	NM_001006597.1	NM_001006597.1		298724	54635055	NM_001006597.1	Olr990	NP_001006597.1	ILMN_1376887	0002350524	S	700	GCCTTTTCTACCTGTTCCTACATCAAGCCTTCTGCAAAAAAGGAGGTGGC	7	+	6051390-6051439	7q11	Rattus norvegicus olfactory receptor 990 (Olr990), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr990; ratchr7-6050691-6051578_ORF	Olr990; ratchr7-6050691-6051578_ORF
Rattus norvegicus	RefSeq	GI_62644844-S	ILMN_51716	LOC499767	XM_575105.1	XM_575105.1		499767	62644844	XM_575105.1	LOC499767	XP_575105.1	ILMN_1364045	0003870044	S	1560	AGACGTGACTCTGACCTGGGTGGATGAAGAGCTGTCTGCCCAGCGCCATT					PREDICTED: Rattus norvegicus LOC499767 (LOC499767), mRNA.					
Rattus norvegicus	RefSeq	GI_56961630-S	ILMN_281113	ASGR1	NM_012503.2	NM_012503.2		24210	56961630	NM_012503.2	Asgr1	NP_036635.1	ILMN_1352583	0001980358	S	1033	AGGGGCTGGTAAAGAATGGTGTTTGAGGAATGTGGTATGATGCCTGGTGG	10	+	56903023-56903072	10q24	Rattus norvegicus asialoglycoprotein receptor 1 (Asgr1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The mediation of the endocytosis of plasma glycoproteins from which the terminal sialic acid residue on their complex carbohydrate moieties has been removed; recognizes the terminal galactose and N-acetylgalactosamine units; the complex of receptor and ligand is internalized and transported to a sorting organelle where disassociation occurs, the receptor being recycled to the cell membrane [goid 4873] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	RHL1; MGC108731; RATRHL1; ASGR	RHL1; MGC108731; RATRHL1; ASGR
Rattus norvegicus	RefSeq	GI_24475667-S	ILMN_278906	PAWR	NM_033485.2	NM_033485.2		64513	24475667	NM_033485.2	Pawr	NP_277020.1	ILMN_1369640	0005390129	S	1984	CTCAGCCGATTCCTGAGTTGGAGACACCCTGGGATGCTTTTTGTCAATAG	7	+	47119483-47119532	7q21	Rattus norvegicus PRKC, apoptosis, WT1, regulator (Pawr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence ISS]; The chemical reactions and pathways resulting in the formation of interleukin-2 [goid 42094] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of beta-amyloid [goid 42986] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50860] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	Par-4; Par4	Par-4; Par4
Rattus norvegicus	RefSeq	GI_47576170-S	ILMN_287958	OLR1364	NM_001000858.1	NM_001000858.1		405150	47576170	NM_001000858.1	Olr1364	NP_001000858.1	ILMN_1352251	0000780722	S	869	ATAGCCTGAGGAACAGAGACATGAAAGGGGCTTTAAGGAAACTGCTCACC	10	-	12252330-12252379	10q12	Rattus norvegicus olfactory receptor 1364 (Olr1364), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1364	Olr1364
Rattus norvegicus	RefSeq	GI_16758353-S	ILMN_298064	TINAGL1	NM_053582.1	NM_053582.1		94174	16758353	NM_053582.1	Tinagl1	NP_446034.1	ILMN_1354305	0006100110	S	1489	GTGCTAATCCCCTCAGACTCAGATCCACACAAACGCAGAACCCCACCTGG	5	-	149198603-149198652	5q36	Rattus norvegicus tubulointerstitial nephritis antigen-like 1 (Tinagl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	gis5	gis5
Rattus norvegicus	RefSeq	GI_62654816-S	ILMN_53580	LOC363212	XM_343550.2	XM_343550.2		363212	62654816	XM_343550.2	LOC363212	XP_343551.2	ILMN_1351982	0002030397	S	1381	TCACTGGCCGGAGGGGCCTTTACAGGAACCATACGCAGTCTGATAACCTG				9q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230209C24 gene (predicted) (LOC363212), mRNA.					
Rattus norvegicus	RefSeq	GI_62653362-S	ILMN_49045	LOC315499	XM_235975.3	XM_235975.3		315499	62653362	XM_235975.3	LOC315499	XP_235975.3	ILMN_1372772	0006220162	S	794	CCCAGGAGAAGACGAGAAACAGCAGCTTCAGTACCACAGCCAGTCCAGCC				8q13	PREDICTED: Rattus norvegicus similar to EH-domain containing 3 (LOC315499), mRNA.					
Rattus norvegicus	RefSeq	GI_19923696-S	ILMN_58181	ADORA2A	NM_053294.3	NM_053294.3		25369	78126171	NM_053294.3	Adora2a	NP_445746.3	ILMN_1364931	0000840671	S	2362	GTTCAGCGCTACCCTGTCTGAGGCCCTGACTACTGCCTTTCCTTCCAGAG	20	-	13815792-13815841	20p12	Rattus norvegicus adenosine A2a receptor (Adora2a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness [goid 30673] [evidence IDA]; A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density [goid 32279] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix [goid 48786] [evidence IDA]	The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IEA]; The series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 1973] [evidence ISS]; The series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 1973] [evidence IEA]; The series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 1973] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IMP]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence IMP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of glutamate [goid 14049] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of acetylcholine [goid 14057] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine [goid 14061] [evidence IMP]; The process of renal water excretion [goid 30146] [evidence IMP]; The process of renal sodium excretion [goid 30147] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them [goid 31000] [evidence IDA]; Any process that directly activates any of the steps required for cell death by apoptosis as a result of a chemical stimulus [goid 31558] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32230] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32230] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of locomotion of a cell or organism [goid 40013] [evidence IDA]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IEA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that reduces the extent to which blood vessels can be pervaded by fluid [goid 43116] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active [goid 43279] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IDA]; Any process that activates or increases the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 45938] [evidence IDA]; A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 48143] [evidence IMP]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IDA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IDA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence IDA]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence IDA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IMP]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51925] [evidence IMP]; Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51968] [evidence IDA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IDA]; Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential [goid 60080] [evidence ISS]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence IMP]	Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence TAS]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence ISS]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IEA]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a type 5 metabotropic glutamate receptor [goid 31802] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with nonmuscle isoforms of actinin. Nonmuscle alpha-actinin is found at the leading edge of motile cells, cell adhesion sites, focal contacts and along actin stress fibers in migrating cells [goid 51372] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC93190; A2ar; ADENO	MGC93190; A2ar; ADENO
Rattus norvegicus	RefSeq	GI_62718742-S	ILMN_57298	LOC503405	XM_578945.1	XM_578945.1		503405	62718742	XM_578945.1	LOC503405	XP_578945.1	ILMN_1366050	0002030048	S	729	TCAGGCACCAGCCCTTTGCTGACGCGACTTGCTCCTGGGATGTGGGAGCT					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503405), mRNA.					
Rattus norvegicus	RefSeq	GI_62652495-S	ILMN_49201	MLZE_PREDICTED	XM_216925.4	XM_216925.4		299908	109480821	XM_216925.4	Mlze_predicted	XP_216925.4	ILMN_1355782	0003990093	S	1271	ACGAATTGCTGAAGGGGTGTGGTCTGAAGATGGAGCCGAATAGTCCCAGG	7	-	101109004-101109053	7q33	PREDICTED: Rattus norvegicus melanoma-derived leucine zipper, extra-nuclear factor (predicted) (Mlze_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506832-S	ILMN_282614	KCNN2	NM_019314.1	NM_019314.1		54262	9506832	NM_019314.1	Kcnn2	NP_062187.1	ILMN_1354799	0004120364	S	1587	CAGCCAGACCATCAGACAGCAGCAAAGGGACTTCATAGAGACACAGATGG	18	+	39704881-39704930	18q11	Rattus norvegicus potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 (Kcnn2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the transmembrane transfer of potassium by a channel with a unit conductance of 2 to 20 picoSiemens that opens in response to stimulus by internal calcium ions. Small conductance calcium-activated potassium channels are more sensitive to calcium than are large conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism [goid 16286] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_57527502-S	ILMN_266332	IMP4	NM_001009700.1	NM_001009700.1		316317	57527502	NM_001009700.1	Imp4	NP_001009700.1	ILMN_1352182	0002120441	S	1468	CCTTCTTGGGAGTTAGGCCCTGTGAGCACTTTTTCCTGTGCTTTAGGGTC	9	+	33184325-33184374	9q21	Rattus norvegicus IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) (Imp4), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1308463; MGC94302; LRRGT00017	RGD1308463; MGC94302; LRRGT00017
Rattus norvegicus	RefSeq	GI_62643917-S	ILMN_48778	LOC499675	XM_574997.1	XM_574997.1		499675	62643917	XM_574997.1	LOC499675	XP_574997.1	ILMN_1363332	0006180452	S	454	CCGTGCTGCTGCCCAAGAAGACTGAGAGCCACAAGGCTAAGAGCAAGTAA				2q34	PREDICTED: Rattus norvegicus similar to histone H2a(A)-613 (LOC499675), mRNA.					
Rattus norvegicus	RefSeq	GI_13591877-S	ILMN_301067	TP53	NM_030989.1	NM_030989.1		24842	13591877	NM_030989.1	Tp53	NP_112251.1	ILMN_1366265	0003440632	S	1629	CCACCCCACCGCCTGTAAGATTCTATCTTGGGCCCTCATACGATCTGTAT	10	+	56410970-56411019	10q24	Rattus norvegicus tumor protein p53 (Tp53), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a tumor cell [goid 2347] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	p53; Trp53; MGC112612	p53; Trp53; MGC112612
Rattus norvegicus	RefSeq	GI_18677762-A	ILMN_289983	HADHA	NM_130826.1	NM_130826.1		170670	18677762	NM_130826.1	Hadha	NP_570839.1	ILMN_1376331	0000060670	S	2623	GGCCTGGGGTGCCGAGGGCATTTTCGCACCAAGCCAAACACAGGATAACA					Rattus norvegicus hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit (Hadha), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A complex that includes the long-chain 3-hydroxyacyl-CoA dehydrogenase and long-chain enoyl-CoA hydratase activities in two subunits (alpha and beta), catalyzing two steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix [goid 16507] [evidence TAS]; A complex that includes the long-chain 3-hydroxyacyl-CoA dehydrogenase and long-chain enoyl-CoA hydratase activities in two subunits (alpha and beta), catalyzing two steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix [goid 16507] [evidence IDA]	The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IDA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence IMP]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence IDA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O [goid 4300] [evidence IMP]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O [goid 4300] [evidence IDA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O [goid 16508] [evidence IDA]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+. Acts most rapidly on derivatives with chain length 8 or 10 [goid 16509] [evidence ISS]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+. Acts most rapidly on derivatives with chain length 8 or 10 [goid 16509] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]	MGC105338	MGC105338
Rattus norvegicus	RefSeq	GI_62658816-S	ILMN_49791	GLT1D1_PREDICTED	XM_222147.4	XM_222147.4		304445	109495816	XM_222147.4	Glt1d1_predicted	XP_222147.4	ILMN_1354388	0002370164	S	942	GCGATCCCGCACTGGAGAAGGAAATCGTGACCAACGGAAGGGAATACGTG	12	-	30026400-30026449	12q14	PREDICTED: Rattus norvegicus glycosyltransferase 1 domain containing 1 (predicted) (Glt1d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661725-S	ILMN_57789	RGD1304929_PREDICTED	XM_224403.4	XM_224403.4		290403	109501881	XM_224403.4	RGD1304929_predicted	XP_224403.4	ILMN_1365092	0000610132	S	2326	AGGGCCTGCTTCCACAAACAGTGCTTCCAGTCTTCCAGATGCCCTCGCTG	15	+	55913230-55913279	15q11	PREDICTED: Rattus norvegicus similar to chromosome 13 open reading frame 18 (predicted) (RGD1304929_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658735-I	ILMN_277378	LOC687177	XM_001077395.1	XM_001077395.1		687177	109497198	XM_001077395.1	LOC687177	XP_001077395.1	ILMN_1375879	0002640112	S	286	GTCCAGCCAGGGGACAAGTGGGTGCAGAGATACATTTCCTTGTTGAACGC					PREDICTED: Rattus norvegicus similar to eotaxin 3-like (LOC687177), mRNA.					
Rattus norvegicus	RefSeq	GI_62645870-S	ILMN_271846	CPXM1_PREDICTED	XM_001081157.1	XM_001081157.1		296156	109470823	XM_001081157.1	Cpxm1_predicted	XP_001081157.1	ILMN_1368740	0001170324	S	2365	GGCCCCGTTCCCTGCAATTTCCTACTCACCAAGACTCCCAAACAGAGGCT				3q36	PREDICTED: Rattus norvegicus carboxypeptidase X 1 (M14 family) (predicted) (Cpxm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576490-S	ILMN_298288	OLR1614	NM_001000841.1	NM_001000841.1		405130	47576490	NM_001000841.1	Olr1614	NP_001000841.1	ILMN_1359876	0000670563	S	672	AGTTCTGAGGGCTGTGATACGGATGCCATCTTCTGCTGGATCAAAGAAGG	15	+	26102587-26102636	15p14	Rattus norvegicus olfactory receptor 1614 (Olr1614), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1614	Olr1614
Rattus norvegicus	RefSeq	GI_8393909-S	ILMN_269920	PEBP1	NM_017236.1	NM_017236.1		29542	8393909	NM_017236.1	Pebp1	NP_058932.1	ILMN_1354205	0006370377	S	905	TGCTGTGTGGAGGCCAGGCTGTGGAGAGAGACCCTGTTAGCCCCTTACAT	12	+	40495461-40495510	12q16	Rattus norvegicus phosphatidylethanolamine binding protein 1 (Pebp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence IMP]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence TAS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Pbp; Rkip; HCNP	Pbp; Rkip; HCNP
Rattus norvegicus	RefSeq	GI_62644294-S	ILMN_68703	LOC499704	XM_575032.1	XM_575032.1		499704	62644294	XM_575032.1	LOC499704	XP_575032.1	ILMN_1367651	0007100546	S	621	CTGAGCAGGAGGCTATTTATAGGTAGATGTCTTTATGCAGGAAGGCAGGT					PREDICTED: Rattus norvegicus similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38) (LOC499704), mRNA.					
Rattus norvegicus	RefSeq	GI_62661793	ILMN_271464	RGD1559682_PREDICTED	XM_001075526.1	XM_001075526.1		361080	109502834	XM_001075526.1	RGD1559682_predicted	XP_001075526.1	ILMN_1649961	0007000706	S	440	AGAGGAGGCACGAACATTGTGGAAGCCATGGAGCATTTTGGGTCCAGGAA				15q21	PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase A (cyclophilin A)) (predicted) (RGD1559682_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138598-S	ILMN_301391	HMGB1	NM_012963.2	NM_012963.2		25459	52138598	NM_012963.2	Hmgb1	NP_037095.1	ILMN_1359535	0004570347	S	1956	AATCATGTTTAATCTGCTTAGTTTAGGGAACAATTTGGCAATTTTGTGGG				12p11	Rattus norvegicus high mobility group box 1 (Hmgb1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence IMP]; The ligation by DNA ligase of DNA strands. Ligation occurs after polymerase action to fill the gap left by the action of endonucleases during base-excision repair [goid 6288] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcriptional preinitiation complex assembly [goid 17055] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence TAS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Modulates the activity of nitric oxide synthase [goid 30235] [evidence ISS]	MGC93599; Hmg1; Ac2-008; MGC93598	MGC93599; Hmg1; Ac2-008; MGC93598
Rattus norvegicus	RefSeq	GI_62643161-S	ILMN_263280	SLC10A5	NM_001025280.1	NM_001025280.1		310230	70608093	NM_001025280.1	Slc10a5	NP_001020451.1	ILMN_1350771	0002260364	S	986	TGGCTAACCTAGAGGTGTTTCTTTTGGGGCTTCTGGTTCCCGTACTGGGC	2	+	93411702-93411751	2q23	Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter family), member 5 (Slc10a5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718069-S	ILMN_265775	STAP2	NM_001025026.1	NM_001025026.1		363334	68163538	NM_001025026.1	Stap2	NP_001020197.1	ILMN_1370452	0002510136	S	1138	CACCGCTGAGCTGGAAGAGAAACTACAGAAGAGGAGGGCACTGGAACACT	Un|NW_047865.1	+	1068179-1068228		Rattus norvegicus signal transducing adaptor family member 2 (Stap2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108972	MGC108972
Rattus norvegicus	RefSeq	GI_62643421-S	ILMN_69762	LOC499611	XM_574937.1	XM_574937.1		499611	62643421	XM_574937.1	LOC499611	XP_574937.1	ILMN_1358404	0004230372	S	3347	GGCGACTAATGAGATGGCTTCTGGAAAAGGTTCCTTCTGGACTGGGGTCC					PREDICTED: Rattus norvegicus similar to LRRGT00088 (LOC499611), mRNA.					
Rattus norvegicus	RefSeq	GI_11067422-S	ILMN_300165	SMAD5	NM_021692.1	NM_021692.1		59328	11067422	NM_021692.1	Smad5	NP_067724.1	ILMN_1350028	0002450168	S	1318	GTTTTGTCAAGGGCTGGGGAGCAGAGTACCACCGACAGGATGTAACCAGT	17	-	13814481-13814520:13815686-13815695	17p14	Rattus norvegicus SMAD family member 5 (Smad5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone [goid 2051] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence NAS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IEA]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Madh5	Madh5
Rattus norvegicus	RefSeq	GI_61557262-S	ILMN_263619	GDAP2	NM_001013201.1	NM_001013201.1		362004	61557262	NM_001013201.1	Gdap2	NP_001013219.1	ILMN_1351978	0006040133	S	2039	CACATTGTCTCTTACAGTGCACGCTTCCGGACTCTGTTACCCAGGCTACC	2	+	195173946-195173995	2q34	Rattus norvegicus ganglioside-induced differentiation-associated-protein 2 (Gdap2), mRNA.					
Rattus norvegicus	RefSeq	GI_62649292-S	ILMN_67408	LOC500512	XM_580079.1	XM_580079.1		500512	62649292	XM_580079.1	LOC500512	XP_580079.1	ILMN_1366249	0003870064	S	551	CAGCTAACTGGTGCGGGCAGATGCTTAAGGGGCAGGTGTAATAGCCCTTA					PREDICTED: Rattus norvegicus LOC500512 (LOC500512), mRNA.					
Rattus norvegicus	RefSeq	GI_62658711-S	ILMN_64832	CUTL1	XM_347163.3	XM_347163.3		116639	109495542	XM_347163.3	Cutl1	XP_347164.3	ILMN_1372065	0004850041	S	577	CCGGGATTCTGCCAGGTGGATGTTGTGCGTAGCCGGAGCCAAGTTGAAGA	12	+	21224489-21224537:21304251-21304251	12q12	PREDICTED: Rattus norvegicus cut-like 1 (Drosophila) (Cutl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62658387-S	ILMN_69799	LOC498136	XM_573347.1	XM_573347.1		498136	62658387	XM_573347.1	LOC498136	XP_573347.1	ILMN_1367982	0000510687	S	5527	CCTGCTATCCTTGGCTCTCTAGCCCTGATCATTCAGAAGCACCTGAGCAG				12p11	PREDICTED: Rattus norvegicus similar to mKIAA0774 protein (LOC498136), mRNA.					
Rattus norvegicus	RefSeq	GI_47577106-S	ILMN_268318	OLR321	NM_001000244.1	NM_001000244.1		293759	47577106	NM_001000244.1	Olr321	NP_001000244.1	ILMN_1352818	0007100167	S	669	GATGTTGAGGTCTCAGGCAGGAGAGGACAGGAGAAAAGCCATCTCCACAT	1	-	214892819-214892868	1q43	Rattus norvegicus olfactory receptor 321 (Olr321), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr321; ratchr1-215051967-215051035_ORF	Olr321; ratchr1-215051967-215051035_ORF
Rattus norvegicus	RefSeq	GI_62649963-S	ILMN_56491	HSPB7	XM_342966.3	XM_342966.3		50565	109475763	XM_342966.3	Hspb7	XP_342967.1	ILMN_1372382	0000670411	S	1503	CCACAGGGAGAACCCCAAACCAGATCCCTTCTGGCCCCTAAATCCAGTGC	5	+	160315125-160315174	5q36	PREDICTED: Rattus norvegicus heat shock 27kD protein family, member 7 (cardiovascular) (Hspb7), mRNA.		A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]			
Rattus norvegicus	RefSeq	GI_62660561-S	ILMN_57608	RGD1561241_PREDICTED	XM_573620.2	XM_573620.2		498385	109499731	XM_573620.2	RGD1561241_predicted	XP_573620.1	ILMN_1359249	0003170050	S	1809	GCTGATGCTGTTCCCTGCAGCCACAGCTATTGTCTAAAGTCGGAGTAGTA	14	+	70465189-70465238	14q21	PREDICTED: Rattus norvegicus similar to Mblk1-related protein-1 (predicted) (RGD1561241_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654651-S	ILMN_68385	APOBEC2_PREDICTED	XM_217334.2	XM_217334.2		301226	62654651	XM_217334.2	Apobec2_predicted	XP_217334.1	ILMN_1373029	0003520129	S	792	AGCTCAGCCTTCCGTCTGCCTGCTGCCACTCAGAGCAATGACCAGGATGG				9q12	PREDICTED: Rattus norvegicus apolipoprotein B editing complex 2 (predicted) (Apobec2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758879-S	ILMN_282869	KCNJ12	NM_053981.1	NM_053981.1		117052	16758879	NM_053981.1	Kcnj12	NP_446433.1	ILMN_1351533	0002260037	S	1847	TCAGAGGTCGGGTTTCTCCCTCACGTGGGCCAGGGCTGCAAGTTGTCATT	10	+	47215074-47215123	10q22	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 12 (Kcnj12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	 [goid 5242] [evidence IEA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir2.1; IRK2	Kir2.1; IRK2
Rattus norvegicus	RefSeq	GI_62662447-S	ILMN_283716	MEF2B	NM_001017507.1	NM_001017507.1		498607	62945369	NM_001017507.1	Mef2b	NP_001017507.1	ILMN_1351308	0005270056	S	941	CCTCCGACACCTCCGGTCAGCATCAAATCCGAACGTCTGTCTCCAGTCAC	16	-	19736342-19736391	16p14	Rattus norvegicus myocyte enhancer factor 2B (Mef2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659396-S	ILMN_279012	KIF14_PREDICTED	XM_001064361.1	XM_001064361.1		360849	109498705	XM_001064361.1	Kif14_predicted	XP_001064361.1	ILMN_1353648	0003520279	S	4707	CCTGAAACCCTGGGAATCTTGTACTTCGAATAGCACGGAAGAGCAGCGAG				13q13	PREDICTED: Rattus norvegicus kinesin family member 14 (predicted) (Kif14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647179-S	ILMN_276011	LOC502758	XM_001072921.1	XM_001072921.1		502758	109473421	XM_001072921.1	LOC502758	XP_001072921.1	ILMN_1363920	0000730463	S	659	TCCTCTGGACAATTCTGAAAATGCAGTCAAAGGAGGGACGCAAGAAGGCC				4q23	PREDICTED: Rattus norvegicus similar to olfactory receptor 437 (LOC502758), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655523-S	ILMN_275568	LAMA1_PREDICTED	XM_001054302.1	XM_001054302.1		316758	109487627	XM_001054302.1	Lama1_predicted	XP_001054302.1	ILMN_1361319	0004850020	S	9022	GGGAAATGGCACACGCTCCATGCCCACAAAAGCAGGCACCGAATCGTCCT				9q37	PREDICTED: Rattus norvegicus laminin, alpha 1 (predicted) (Lama1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660873-S	ILMN_59736	LOC498427	XM_573676.1	XM_573676.1		498427	62660873	XM_573676.1	LOC498427	XP_573676.1	ILMN_1363531	0006020133	S	1544	GAAAGGGTCCCCTGCAGCGAGTCCTCAAAGTAGTGATAACAGTGACACCC					PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 34 (LOC498427), mRNA.					
Rattus norvegicus	RefSeq	GI_62654860-S	ILMN_266174	LOC680844	XM_001059150.1	XM_001059150.1		680844	109485724	XM_001059150.1	LOC680844	XP_001059150.1	ILMN_1372963	0001850112	S	844	CCTATGCTGCTGGTCGTGGCCTATGGGTTTTGGAAGAAGAGACACATGGG	9	-	8108509-8108558	9q12	PREDICTED: Rattus norvegicus similar to triggering receptor expressed on myeloid cells-like 2 (LOC680844), mRNA.					
Rattus norvegicus	RefSeq	GI_62664597-S	ILMN_67279	MC2R	XM_574167.2	XM_574167.2		282839	109506738	XM_574167.2	Mc2r	XP_574167.1	ILMN_1374946	0002760156	S	835	CGGAGCCCAGAGCTCAGAGAGGCATTCAAAAAGATGCTCTTCTGCAACAG	18	+	64601789-64601838	18q12.1	PREDICTED: Rattus norvegicus melanocortin 2 receptor (Mc2r), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with adrenocorticotropin to initiate a change in cell activity [goid 4978] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642599-S	ILMN_287068	SFRS16	NM_001024294.1	NM_001024294.1		499390	66730332	NM_001024294.1	Sfrs16	NP_001019465.2	ILMN_1363720	0000610048	S	1893	GGCCCGAAAGATCCGAATGAAGGAGCGAGAGCGACGAGAGAAGGAGAGAG	1|NW_047582.1	+	32647-32667:34215-34243		Rattus norvegicus splicing factor, arginine/serine-rich 16 (Sfrs16), mRNA.				Sfrs16	Sfrs16
Rattus norvegicus	RefSeq	GI_62666583-S	ILMN_262745	FTSJ1_PREDICTED	XM_001062916.1	XM_001062916.1		363450	109511565	XM_001062916.1	Ftsj1_predicted	XP_001062916.1	ILMN_1355185	0001660017	S	986	AATATACTCCACCCACACAGCCCCCCATTGCACCTCCATACCAGGAGGCC				Xq13	PREDICTED: Rattus norvegicus Ftsj homolog 1 (E. coli) (predicted) (Ftsj1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658231-S	ILMN_57322	UBE2L3_PREDICTED	XM_344046.3	XM_344046.3		363836	109493605	XM_344046.3	Ube2l3_predicted	XP_344047.2	ILMN_1355963	0002510671	S	2575	AGTACTCTTATGCCAGCAGCCCCTCTCAGGGACTCTCAGCCCCACTGTTG	11	+	85842701-85842750	11q23	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2L 3 (predicted) (Ube2l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645662	ILMN_284245	LOC311352	XM_001076480.1	XM_001076480.1		311352	109470503	XM_001076480.1	LOC311352	XP_001076480.1	ILMN_1649717	0005290369	S	823	AACACCCCCGAGGCAGGGTCAGTGGATCAGGTGAACTTCGTGAGGCAACA				3q35	PREDICTED: Rattus norvegicus similar to Adenosine deaminase CG11994-PA, transcript variant 2 (LOC311352), mRNA.		The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9168] [evidence IEA]; The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9168] [evidence IEA]	Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3) [goid 19239] [evidence IEA]; Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3) [goid 19239] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666533-S	ILMN_296152	USP9X_PREDICTED	XM_001056701.1	XM_001056701.1		363445	109511483	XM_001056701.1	Usp9x_predicted	XP_001056701.1	ILMN_1350078	0000610292	S	7795	CCTGAGGAGGAACCAGATGACCAAGATGCCCCAGATGAGCATGAATCACC				Xq13	PREDICTED: Rattus norvegicus ubiquitin specific peptidase 9, X chromosome (predicted) (Usp9x_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645907-S	ILMN_58661	PRND_PREDICTED	XM_230542.3	XM_230542.3		113910	62645907	XM_230542.3	Prnd_predicted	XP_230542.3	ILMN_1350440	0000670577	S	1743	CTGAGCTAAAACGTGTGCTCTGTAGAACTGCACGCAAACTGACAGCCGAG				3q36	PREDICTED: Rattus norvegicus prion protein dublet (predicted) (Prnd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658404-S	ILMN_47942	LOC363868	XM_344074.2	XM_344074.2		363868	62658404	XM_344074.2	LOC363868	XP_344075.2	ILMN_1355994	0005080026	S	1074	GGGCACACTGAACACCCCTTCAAACACAGCGAACGCAACCACCAGAGCAG					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (LOC363868), mRNA.					
Rattus norvegicus	RefSeq	GI_62643730-S	ILMN_61953	RGD1305653_PREDICTED	XM_215648.4	XM_215648.4		295293	109465041	XM_215648.4	RGD1305653_predicted	XP_215648.4	ILMN_1374773	0004480722	S	2928	TGCCTGGGGAACCCCGAGAAAGCAGCTATGTGGAGATGAAAGGCCCTCCA	2	-	179811408-179811457	2q34	PREDICTED: Rattus norvegicus similar to MEGF12 (predicted) (RGD1305653_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51242144-S	ILMN_283777	PPP1R1A	NM_022676.3	NM_022676.3		58977	51242144	NM_022676.3	Ppp1r1a	NP_073167.1	ILMN_1356921	0001500520	S	1356	AGCTAAGAAGAGCATAGCCTGGGCAGTGAAGGACTGTGTGCCGTAGCGCC	7	-	142428874-142428923	7q36	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 1A (Ppp1r1a), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644021	ILMN_283480	TARS2	NM_001014040.1	NM_001014040.1		310672	62078810	NM_001014040.1	Tars2	NP_001014062.1	ILMN_1649932	0003170095	S	1801	TCTGTGGAAAGGCTCTTGGGAGTGCTGGCAGAAAGCTGTGGGGGGAGATG	2	-	190532891-190532892:190533047-190533094	2q34	Rattus norvegicus threonyl-tRNA synthetase 2, mitochondrial (putative) (Tars2), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6435] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr) [goid 4829] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	RGD1308283	RGD1308283
Rattus norvegicus	RefSeq	GI_34874718-S	ILMN_64841	LOC364318	XM_344343.1	XM_344343.1		364318	34874718	XM_344343.1	LOC364318	XP_344344.1	ILMN_1374497	0001690731	S	80	GACTCAGGTTCAGTCAACAGCAAGCTGGCAGGAGCGGGAAGAAGTCACCC				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor V delta 6 (LOC364318), mRNA.					
Rattus norvegicus	RefSeq	GI_62667195-S	ILMN_277089	RGD1560706_PREDICTED	XR_007560.1	XR_007560.1		503454	109512158	XR_007560.1	RGD1560706_predicted		ILMN_1373833	0000610722	S	293	GTGGGCATATGGGCATAGGGAAGAGCAAGAGGTGACCTGGATGAGAAGGA				Xq31	PREDICTED: Rattus norvegicus similar to LRRGT00057 (predicted) (RGD1560706_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667096-S	ILMN_277089	RGD1560706_PREDICTED	XR_007560.1	XR_007560.1		503454	109512158	XR_007560.1	RGD1560706_predicted		ILMN_1351707	0003060168	S	541	AAACCAAGGAAGCATGAAAGCGCTGGGAGGAGCGCCTCCAGGCAAAGAAG				Xq31	PREDICTED: Rattus norvegicus similar to LRRGT00057 (predicted) (RGD1560706_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658201-S	ILMN_294270	RGD1563782_PREDICTED	XM_001062651.1	XM_001062651.1		498115	109494730	XM_001062651.1	RGD1563782_predicted	XP_001062651.1	ILMN_1370075	0005910086	S	1214	AACGTCTGGAAGCTCAGGGCCTTACTGGGTCCCTTCTTACGCCTGGAGGT				11q23	PREDICTED: Rattus norvegicus RGD1563782 (predicted) (RGD1563782_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652356-S	ILMN_65161	LOC500860	XM_576257.1	XM_576257.1		500860	62652356	XM_576257.1	LOC500860	XP_576257.1	ILMN_1363023	0000520603	S	357	GGAGCTGTAGATATGAGCTTCACCAACAGAATACAAGAGATGGACGAGAG					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC500860), mRNA.					
Rattus norvegicus	RefSeq	GI_62647582-S	ILMN_282734	LOC687573	XM_001079200.1	XM_001079200.1		687573	109516057	XM_001079200.1	LOC687573	XP_001079200.1	ILMN_1364759	0001690059	S	150	GTATGGGCCAGAGTGCCAGTGCAACTTGTGCTGGGTCAATGATGCCATCA					PREDICTED: Rattus norvegicus hypothetical protein LOC687573 (LOC687573), mRNA.					
Rattus norvegicus	RefSeq	GI_62660148-S	ILMN_49794	LOC501887	XM_577307.1	XM_577307.1		501887	62660148	XM_577307.1	LOC501887	XP_577307.1	ILMN_1353052	0005670129	S	2912	CACGTGTTTGGCCTGTGGAACTGAAGCTGTGTCTACCAGGGTATCCGTGC					PREDICTED: Rattus norvegicus similar to Rho GTPase activating protein 24 (LOC501887), mRNA.					
Rattus norvegicus	RefSeq	GI_62638216-S	ILMN_61143	LOC292474	XM_218078.2	XM_218078.2		292474	62638216	XM_218078.2	LOC292474	XP_218078.2	ILMN_1356051	0006380102	S	434	CCTGCATATCGTTGGAAGTACGCTGCAGTTCCACCCAGAACGGTTCCTGA				1p13	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (LOC292474), mRNA.					
Rattus norvegicus	RefSeq	GI_47577338-S	ILMN_280897	OLR712	NM_001000624.1	NM_001000624.1		404816	47577338	NM_001000624.1	Olr712	NP_001000624.1	ILMN_1359904	0004280440	S	684	GGAAGGGAGGCGCAAAGCTCTGTCCACCTGCAGCTCTCATATCACTGTGG	3	-	74083274-74083323	3q24	Rattus norvegicus olfactory receptor 712 (Olr712), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr712	Olr712
Rattus norvegicus	RefSeq	GI_62645599-S	ILMN_66587	RAD51_PREDICTED	XM_230465.4	XM_230465.4		311327	109468664	XM_230465.4	Rad51_predicted	XP_230465.4	ILMN_1363870	0001990100	S	5209	GGAGAGCCTCAGGTTGGTCTCCCTTTCTTGGACAAGGCTTACAGGACGAT	3	+	105608165-105608177:105610538-105610574	3q35	PREDICTED: Rattus norvegicus RAD51 homolog (S. cerevisiae) (predicted) (Rad51_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645597-S	ILMN_66587	RAD51_PREDICTED	XM_230465.4	XM_230465.4		311327	109468664	XM_230465.4	Rad51_predicted	XP_230465.4	ILMN_1351961	0006220487	S	3884	CTCAGCCAGTCTGTAGTCAAGATCCGGGCATTGGCTCTGTTGCAGCCAAA	3	+	105582376-105582425	3q35	PREDICTED: Rattus norvegicus RAD51 homolog (S. cerevisiae) (predicted) (Rad51_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656446-S	ILMN_296119	NCOR1	XM_001077495.1	XM_001077495.1		54299	109490960	XM_001077495.1	Ncor1	XP_001077495.1	ILMN_1357958	0001660154	S	7138	CACCTCAGTTGTGACGAGCAGTGAGACACGGAGAGATGAAGGGGACCCAT				10q23	PREDICTED: Rattus norvegicus nuclear receptor co-repressor 1 (Ncor1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666947	ILMN_57528	LOC501586	XM_576988.1	XM_576988.1		501586	62666947	XM_576988.1	LOC501586	XP_576988.1	ILMN_1649799	0006590162	S	402	CAGTCTGGCAGCTGAACGATGTGAAACTGTAGATGCAGTAGTTACTACGC				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700019M22 (LOC501586), mRNA.					
Rattus norvegicus	RefSeq	GI_42476311-S	ILMN_289772	SERPINB10	NM_153733.2	NM_153733.2		266775	42476311	NM_153733.2	Serpinb10	NP_714955.2	ILMN_1351430	0001500619	S	1085	TCTGGAAATAAATGAAGAAGGCACAGAGGCTGCAGCTGGCACGGGAAGTG	13	+	13662051-13662100	13p13	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10 (Serpinb10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IDA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IDA]	Trespin	Trespin
Rattus norvegicus	RefSeq	GI_24475821-S	ILMN_299175	IFNG	NM_138880.2	NM_138880.2		25712	24475821	NM_138880.2	Ifng	NP_620235.1	ILMN_1355400	0006510114	S	446	CTAGCCTAAGGAAGCGGAAAAGGAGTCGGTGCTGATTCTGGGGTAGAGAG	7	+	57625728-57625755:57625756-57625777	7q22	Rattus norvegicus interferon gamma (Ifng), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The process of apoptosis in neutrophils [goid 1781] [evidence ISS]; The process of apoptosis in neutrophils [goid 1781] [evidence IEA]; The process of apoptosis in inflammatory cells, any cell participating in the inflammatory response to a foreign substance e.g. neutrophil, macrophage [goid 6925] [evidence ISS]; The process of apoptosis in inflammatory cells, any cell participating in the inflammatory response to a foreign substance e.g. neutrophil, macrophage [goid 6925] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation of a myelin sheath around nerve axons [goid 31642] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation of a myelin sheath around nerve axons [goid 31642] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of smooth muscle cell apoptosis [goid 34393] [evidence ISS]; The process of introducing a phosphate group to a tyrosine residue of a Stat1 protein [goid 42508] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence IEA]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the killing by an organism of cells in another organism [goid 51712] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the interferon-gamma receptor [goid 5133] [evidence IEA]	IFNG2	IFNG2
Rattus norvegicus	RefSeq	GI_13929127-S	ILMN_281722	CD82	NM_031797.1	NM_031797.1		83628	13929127	NM_031797.1	Cd82	NP_113985.1	ILMN_1375064	0000610519	S	1481	CCCAGGTAGCCCCCAGTGAGCTTTTCCTTGGTGAGGGACCTGACAGCTTA	3	-	77831965-77832014	3q24	Rattus norvegicus CD82 antigen (Cd82), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Kai1	Kai1
Rattus norvegicus	RefSeq	GI_62660638-S	ILMN_64838	HMX1_PREDICTED	XM_341238.3	XM_341238.3		360960	109499901	XM_341238.3	Hmx1_predicted	XP_341239.3	ILMN_1359204	0001450170	S	607	GGCTACGGAGGTGGTCTGAGTCCTGACACAAGCGACCGGGACTCTCCGGA	14	-	80996512-80996534:80998788-80998814	14q21	PREDICTED: Rattus norvegicus H6 homeo box 1 (predicted) (Hmx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426766-S	ILMN_270790	PPP2R2D	NM_144746.1	NM_144746.1		246255	21426766	NM_144746.1	Ppp2r2d	NP_653347.1	ILMN_1371291	0001570465	S	1595	ACAGGAGAAGAAGGGGTCTCAGCTGGAGCCTTGGGAGAGATGAGTGCTGC	1	+	198674644-198674693	1q41	Rattus norvegicus protein phosphatase 2, regulatory subunit B, delta isoform (Ppp2r2d), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence EXP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence EXP]; Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]	MGC93154	MGC93154
Rattus norvegicus	RefSeq	GI_62648232-S	ILMN_285804	KLRC3	NM_001029908.1	NM_001029908.1		500338	71361670	NM_001029908.1	Klrc3	NP_001025079.1	ILMN_1371758	0001850463	S	294	CCACTCCCTCCTGAATAGAACCCAGAAAGCACGACCTTGTACTCGTTGCC	4	-	166944587-166944608:166945127-166945154	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily C, member 3 (Klrc3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664772-S	ILMN_61023	RGD1310400_PREDICTED	XM_226205.4	XM_226205.4		307615	109507705	XM_226205.4	RGD1310400_predicted	XP_226205.4	ILMN_1372693	0006520037	S	1305	GACCAATTCGAAACATCTGTGTGGGGATAGGATTGGAGGTACCAGAGCAG	19	+	441470-441519	19p14	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ35894 (predicted) (RGD1310400_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663428-S	ILMN_54129	DSP	XM_225259.4	XM_225259.4		306871	109504777	XM_225259.4	Dsp	XP_225259.4	ILMN_1349971	0003440484	S	8713	TGAATCGCTCCATGGTGGAAGACATCACTGGGCTGCGCCTTCTGGAAGCC	17	-	32849157-32849206	17p12	PREDICTED: Rattus norvegicus desmoplakin, transcript variant 2 (Dsp), mRNA.	An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence IDA]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IDA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IEA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence ISS]	The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]	Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660463-S	ILMN_49293	LOC498364	XM_573597.1	XM_573597.1		498364	62660463	XM_573597.1	LOC498364	XP_573597.1	ILMN_1352250	0000360070	S	0	ATGGTCCACGTGACGCTAAAGAGAAGCTCCCGGGAAGGGCTGTCCGAGTC					PREDICTED: Rattus norvegicus similar to ribosomal protein S13 (LOC498364), mRNA.					
Rattus norvegicus	RefSeq	GI_62646723-S	ILMN_279914	RGD1562351_PREDICTED	XM_001062525.1	XM_001062525.1		499990	109472997	XM_001062525.1	RGD1562351_predicted	XP_001062525.1	ILMN_1358234	0002340088	S	623	CAGGACGCTGGGAAATCTGTGTGAATGTCACTGCTGCAAACCAGTGTACG				4q12	PREDICTED: Rattus norvegicus similar to chromosome 7 open reading frame 23 (predicted) (RGD1562351_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758791-S	ILMN_62102	PSCD2	NM_053911.2	NM_053911.2		116692	77020287	NM_053911.2	Pscd2	NP_446363.1	ILMN_1373520	0006840142	S	1297	CAGGCTGCTGTAAGCGTGGACCCCTTCTACGAGATGTTGGCAGCAAGAAA	1	-	96284875-96284923:96285012-96285012	1q22	Rattus norvegicus pleckstrin homology, Sec7 and coiled-coil domains 2 (Pscd2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence TAS]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence TAS]; Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Sec7B; Sec7; Arno	Sec7B; Sec7; Arno
Rattus norvegicus	RefSeq	GI_62638983-S	ILMN_282270	RGD1562625_PREDICTED	XR_008258.1	XR_008258.1		502291	109461032	XR_008258.1	RGD1562625_predicted		ILMN_1354348	0005220333	S	2111	CCGCTGAGGCCTGGCATAGCCATAGACAGACCCACCATGCAGATGGGAAA				1q12	PREDICTED: Rattus norvegicus similar to killer activatory receptor-like protein p91D (predicted) (RGD1562625_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.47082	ILMN_161354	RN.47082	Rn.47082		Rn.47082		82521075	DV727751			ILMN_1530539	0002570451	S	668	TTTTAATGTTAGGTCTATTTTTAGTATAATTTCCCGATTCTTCTCCAACC					RVL20300 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62641886-S	ILMN_63442	LOC499319	XM_574624.1	XM_574624.1		499319	62641886	XM_574624.1	LOC499319	XP_574624.1	ILMN_1349557	0001230176	S	131	GGGCCTGATAGGGTGAACCTGGATCCTTGGGACTGGTGAAATGCGAGAAG				1q43	PREDICTED: Rattus norvegicus similar to testis-expressed transmembrane-4 protein Tetm4.2 (LOC499319), mRNA.					
Rattus norvegicus	RefSeq	GI_62662233-S	ILMN_57243	LOC361113	XM_346937.2	XM_346937.2		361113	62662233	XM_346937.2	LOC361113	XP_346938.2	ILMN_1372196	0006940541	S	894	CTCACCCTGAGCCATGATGCCCCACCTCTAACCAACAAGAACCATGTTCC					PREDICTED: Rattus norvegicus hypothetical LOC361113 (LOC361113), mRNA.					
Rattus norvegicus	RefSeq	GI_6981107-S	ILMN_301228	ITGB4	NM_013180.1	NM_013180.1		25724	6981107	NM_013180.1	Itgb4	NP_037312.1	ILMN_1374720	0004200402	S	5741	GGGGGTAGGTGCTGTCTGGGAGGCATGAAGTGGGTAGAGGTGACACAAGA	10	+	106116486-106116535	10q32.3	Rattus norvegicus integrin beta 4 (Itgb4), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence TAS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence ISS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence TAS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62641107-S	ILMN_69840	EIF3S5_PREDICTED	XM_215037.4	XM_215037.4		293427	109459210	XM_215037.4	Eif3s5_predicted	XP_215037.3	ILMN_1370179	0004610050	S	1019	CATCAACGACCTGCTGATGGTGACCTACCTGGCCAATCTCACCCAGTCAC	1	-	166398940-166398983:166399423-166399428	1q33	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 3, subunit 5 (epsilon) (predicted) (Eif3s5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981231-S	ILMN_266447	MYF6	NM_013172.1	NM_013172.1		25714	6981231	NM_013172.1	Myf6	NP_037304.1	ILMN_1372885	0006130044	S	793	CCCCAGCGTGGAGGAGGTGGTGGAGAAGTAACTCAGTCAGCATTTGGAAC	7	-	46200448-46200466:46200467-46200497	7q21	Rattus norvegicus myogenic factor 6 (Myf6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage [goid 43403] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	MRF4AA	MRF4AA
Rattus norvegicus	RefSeq	GI_62649383-S	ILMN_49038	LRP8_PREDICTED	XM_342877.2	XM_342877.2		362558	62649383	XM_342877.2	Lrp8_predicted	XP_342878.2	ILMN_1363003	0000070402	S	4254	GCTTTCTGGTCAGTGTGCAGATACTGCACGGGGGTTACAAGCCCTCATGA				5q35	PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 8, apolipoprotein e receptor (predicted) (Lrp8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928917-S	ILMN_64691	SLC18A3	NM_031663.2	NM_031663.2		60422	82617579	NM_031663.2	Slc18a3	NP_113851.1	ILMN_1363178	0002640041	S	2664	TGGAGCAGGGAGGCAGAAGAAGCTGTTGGGCTCTTGGCAGAGGTGAAGAG	16	-	7969886-7969935	16p16	Rattus norvegicus solute carrier family 18 (vesicular acetylcholine), member 3 (Slc18a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence ISS]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	rVAT; VACht	rVAT; VACht
Rattus norvegicus	RefSeq	GI_62663528-S	ILMN_60280	LOC364698	XM_577567.1	XM_577567.1		364698	62663528	XM_577567.1	LOC364698	XP_577567.1	ILMN_1354813	0006420154	S	960	TTGGAGGGCAAAGGCCACTTCTTCCGTGAATTGACGCTAGGGCACCGAGC					PREDICTED: Rattus norvegicus similar to Ab2-162 (LOC364698), mRNA.					
Rattus norvegicus	RefSeq	GI_62648711-S	ILMN_286293	FAM82B	NM_001031663.1	NM_001031663.1		500419	72255550	NM_001031663.1	Fam82b	NP_001026833.1	ILMN_1360034	0000840167	S	1515	TACCAGGCAGAGTACTACAACTGTGAGTCTGATGTGCCACCACTGTAAAC	5	+	34233781-34233830	5q13	Rattus norvegicus family with sequence similarity 82, member B (Fam82b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC112702	MGC112702
Rattus norvegicus	RefSeq	GI_62654493-S	ILMN_287159	TTC21A_PREDICTED	XM_001078305.1	XM_001078305.1		301065	109485506	XM_001078305.1	ttc21a_predicted	XP_001078305.1	ILMN_1360337	0003440736	S	3859	CAAGGACGCAGCCACCAACTACGAGCTGGCTTGGAAGTACAGCCATCAGG				8q32	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 21A (predicted) (ttc21a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662824-S	ILMN_283189	RGD1562923_PREDICTED	XM_001070972.1	XM_001070972.1		290825	109504370	XM_001070972.1	RGD1562923_predicted	XP_001070972.1	ILMN_1358938	0003120066	S	5	CCTTTCCACCGAGGTAGCCATCTTCCAGTAAGTCGCCAAAATGACGAACA				16q12.4	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1562923_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12831206-S	ILMN_298662	GABRE	NM_023091.1	NM_023091.1		65191	12831206	NM_023091.1	Gabre	NP_075579.1	ILMN_1354081	0002690168	S	2785	CCTGGAGGCGATGTGGCCGAAGCTATGTGTGCTTCAGGGTTCTCAGGAAG	X	+	158353429-158353478	Xq37	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit epsilon (Gabre), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19705528-S	ILMN_279738	ABTB2	NM_134403.1	NM_134403.1		171440	19705528	NM_134403.1	Abtb2	NP_599230.1	ILMN_1352900	0005910348	S	4149	AGAGCACACTTCTCACCTGGGTTCCGTGACTCTGGGGCATGAACGGACAG	3	+	89011797-89011846	3q32	Rattus norvegicus ankyrin repeat and BTB (POZ) domain containing 2 (Abtb2), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cca3	Cca3
Rattus norvegicus	RefSeq	GI_62665503-S	ILMN_289649	RGD1564016_PREDICTED	XM_001056054.1	XM_001056054.1		498969	109509078	XM_001056054.1	RGD1564016_predicted	XP_001056054.1	ILMN_1369201	0002060056	S	383	TTCCAGGAGGCTGGCTTGGTTCCCTCACACCCTGACGCATATCCAGATGG				19q12	PREDICTED: Rattus norvegicus RGD1564016 (predicted) (RGD1564016_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559965-S	ILMN_293272	IVL	NM_022195.1	NM_022195.1		60583	11559965	NM_022195.1	Ivl	NP_071531.1	ILMN_1349673	0000520438	S	1143	GCAAGTGGAAAAGAAACAGCATGAGAAGTCCCCAGAGCCAGAACTGCACC	2	-	185556791-185556840	2q34	Rattus norvegicus involucrin (Ivl), mRNA.	An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence IEA]; An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns [goid 31424] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865631-A	ILMN_282788	ARHGAP24	NM_001012032.1	NM_001012032.1		305156	58865631	NM_001012032.1	Arhgap24	NP_001012032.1	ILMN_1376736	0006040156	S	2299	GGGAACAATGTGGGATCAGGTGGCTGGTCTGTGTAGAGCTTCATCTGGTG	14	-	8026617-8026666	14p22	Rattus norvegicus Rho GTPase activating protein 24 (Arhgap24), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]	DR-NR#2	DR-NR#2
Rattus norvegicus	RefSeq	GI_62639163-S	ILMN_278750	POU2F2	XM_001077129.1	XM_001077129.1		117058	109461467	XM_001077129.1	Pou2f2	XP_001077129.1	ILMN_1356560	0007040739	S	1090	TGGTCACACCCCAAGGGGGCGCAGGAACCTTACCATTGTCCCAAGCTTCT				1q21	PREDICTED: Rattus norvegicus POU domain, class 2, transcription factor 2 (Pou2f2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whereby transitional stage B cells acquire the specialized features of mature B cells in the spleen [goid 2335] [evidence ISS]; The regulated release of immunoglobulins from a B cell or plasma cell during an immune response [goid 2380] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; The regulated release of immunoglobulins from a B cell or plasma cell, whose mechanism includes the use of alternate polyadenylylation signals to favor the biosynthesis of secreted forms of immunoglobulin over membrane-bound immunoglobulin [goid 48305] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665687-S	ILMN_61381	RGD1562488_PREDICTED	XM_215321.4	XM_215321.4		294268	109509156	XM_215321.4	RGD1562488_predicted	XP_215321.4	ILMN_1370187	0004760402	S	1220	GCTGAGCCTTTGGGCTGCTGTAGCTCTAGTGTATTGTCTGTACCTTGAAG	20	+	4524888-4524937	20p12	PREDICTED: Rattus norvegicus similar to butyrophilin-like 8 (predicted) (RGD1562488_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661014-S	ILMN_266514	NDST2_PREDICTED	XM_001064811.1	XM_001064811.1		114002	109502133	XM_001064811.1	Ndst2_predicted	XP_001064811.1	ILMN_1373189	0002120315	S	3419	ACCTCTGACCTATGAACCTGGGAGGTGAGGAAGAGAGGGTCCAGGGAAGG				15p16	PREDICTED: Rattus norvegicus N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (predicted) (Ndst2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758805-S	ILMN_273653	PIK3C2G	NM_053923.1	NM_053923.1		116720	16758805	NM_053923.1	Pik3c2g	NP_446375.1	ILMN_1349959	0005570121	S	5864	GATCTCACAGTTTGTCACCTGTGTAACAGGCAAACCCAGAGGACGCCTCC	4	+	177074065-177074095	4q44	Rattus norvegicus phosphoinositide-3-kinase, class 2, gamma polypeptide (Pik3c2g), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate [goid 35005] [evidence IDA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate [goid 35005] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653381-S	ILMN_278826	SNX19_PREDICTED	XM_001055595.1	XM_001055595.1		315478	109484446	XM_001055595.1	Snx19_predicted	XP_001055595.1	ILMN_1371364	0000610014	S	3083	CGCTGGGCACAATACCTCCGCCTTCTTCGGGAATCTATCTGGCCTGGTGG				8q13	PREDICTED: Rattus norvegicus sorting nexin 19 (predicted) (Snx19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664466-S	ILMN_265902	RGD1559594_PREDICTED	XM_001058066.1	XM_001058066.1		307305	109507347	XM_001058066.1	RGD1559594_predicted	XP_001058066.1	ILMN_1364896	0001500273	S	2505	GCCCAATGAGTGTAAGCCGATAACCGAGAGCCCGGAATCAATCGAAGTGG				18q11	PREDICTED: Rattus norvegicus similar to PR-domain zinc finger protein 6 (predicted) (RGD1559594_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718713-S	ILMN_55645	LOC367638	XM_578941.1	XM_578941.1		367638	62718713	XM_578941.1	LOC367638	XP_578941.1	ILMN_1358427	0004050528	S	397	GAATTCTTATGGAGCAGATCCTCAAGCCGATGGCAGACGAGGCCTGCAAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC367638), mRNA.					
Rattus norvegicus	RefSeq	GI_62639415-S	ILMN_53983	RGD1561747_PREDICTED	XM_574424.2	XM_574424.2		499132	109458591	XM_574424.2	RGD1561747_predicted	XP_574424.1	ILMN_2039485	0006020424	S	1012	ACCGTTTTCAGCGCCGTGCTGCTGGTGGCTGTGGCCCTCGCCTTATGTGT	1	-	88115898-88115947	1q21	PREDICTED: Rattus norvegicus similar to RGS9-1 anchor protein (predicted) (RGD1561747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638744-S	ILMN_64603	LOC365143	XM_344839.2	XM_344839.2		365143	62638744	XM_344839.2	LOC365143	XP_344840.2	ILMN_1352281	0004070711	S	1454	CTGCACAGCCCAGGCACAGCAAGCCACTACCGATAACACCTACACAGGAC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365143), mRNA.					
Rattus norvegicus	RefSeq	GI_62666782-S	ILMN_48988	LOC501549	XM_576951.1	XM_576951.1		501549	62666782	XM_576951.1	LOC501549	XP_576951.1	ILMN_2038835	0003120730	S	276	GAGACAAGGAGCTGTAGATACAAGCCTCACCAACAGAATTCAAGAGATGG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC501549), mRNA.					
Rattus norvegicus	RefSeq	GI_47576592-S	ILMN_268009	OLR1664	NM_001001007.1	NM_001001007.1		405375	47576592	NM_001001007.1	Olr1664	NP_001001007.1	ILMN_1373733	0006770161	S	650	CCTATGGGTTCATTGTAGCGACGGTACTTAGGATTCGTTCCTCAGAGGGC	17	+	51404995-51405044	17q11	Rattus norvegicus olfactory receptor 1664 (Olr1664), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1664	Olr1664
Rattus norvegicus	RefSeq	GI_34868861-S	ILMN_264047	ZDHHC25	NM_001039333.1	NM_001039333.1		300323	86129549	NM_001039333.1	Zdhhc25	NP_001034422.1	ILMN_1368810	0005420368	S	759	TGGTGGCGTTGATGGGCTTCGTCCTTTCCTCGGTGATGCTCTGCACCCAA	7|NW_047794.1	-	2716-2765		Rattus norvegicus zinc finger, DHHC domain containing 25 (Zdhhc25), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	DHHC26	DHHC26
Rattus norvegicus	RefSeq	GI_47058991-S	ILMN_278609	NDUFA11	NM_212517.1	NM_212517.1		301123	47058991	NM_212517.1	Ndufa11	NP_997682.1	ILMN_1351305	0002570142	S	270	CTGTGTCAGTGCCCAGGTCCGAGAGAAGCCAGATGACCCCCTGAACTACT	Un|NW_047865.1	-	358843-358892		Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11 (Ndufa11), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638935-S	ILMN_276295	ZNF324_PREDICTED	XM_001055374.1	XM_001055374.1		365192	109460965	XM_001055374.1	Znf324_predicted	XP_001055374.1	ILMN_1365180	0004480594	S	59	CGGCCCAGAGGGCGCTGTACCGCCATGTAATGCTGGAAAACTTCGCACTT				1q21	PREDICTED: Rattus norvegicus zinc finger protein 324 (predicted) (Znf324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638933-S	ILMN_276295	ZNF324_PREDICTED	XM_001055374.1	XM_001055374.1		365192	109460965	XM_001055374.1	Znf324_predicted	XP_001055374.1	ILMN_1369871	0003440161	S	1991	GCTGAAGACACAGCCCCAGTGCATTCCATCTCCTTGGTGCAAGCCTCAGG				1q21	PREDICTED: Rattus norvegicus zinc finger protein 324 (predicted) (Znf324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47271539-S	ILMN_300797	NTF3	NM_031073.2	NM_031073.2		81737	47271539	NM_031073.2	Ntf3	NP_112335.2	ILMN_1371735	0003140441	S	1272	CGCTCAGGCCTCTCCCATCTGTTAACCTTGTTTTGTGATTGGGCTCTCGG	4	-	162435873-162435922	4q42	Rattus norvegicus neurotrophin 3 (Ntf3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; Process by which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7403] [evidence IEA]; Process by which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7403] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence IEA]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence IEA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence IEA]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system [goid 42490] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of glia cell differentiation [goid 45687] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence IEA]; The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation [goid 48484] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process by which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons [goid 48699] [evidence IEA]; The process by which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons [goid 48699] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence ISS]	Interacting selectively with a neurotrophin receptor [goid 5165] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with nerve growth factor [goid 48406] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62657680-S	ILMN_290107	DSCR2_PREDICTED	XM_001053403.1	XM_001053403.1		288236	109494050	XM_001053403.1	Dscr2_predicted	XP_001053403.1	ILMN_1351775	0006840494	S	928	TTACACATGACCCCACAGATGTAGCCATGACCTGCCTGTCCAGGGGCAGC				11q11	PREDICTED: Rattus norvegicus Down syndrome critical region homolog 2 (human) (predicted) (Dscr2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162336-S	ILMN_300684	APEX1	NM_024148.1	NM_024148.1		79116	13162336	NM_024148.1	Apex1	NP_077062.1	ILMN_1371668	0002260471	S	962	GCTGTCTCACTCTCTTTTACCTGCTTTGTGCGACAGCAAGATCCGGTCCA	15	+	26905973-26906022	15p14	Rattus norvegicus APEX nuclease (multifunctional DNA repair enzyme) 1 (Apex1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence NAS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence NAS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 51101] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate [goid 3906] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence TAS]; Interacting selectively with any metal ion [goid 46872] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence ISS]	Apex	Apex
Rattus norvegicus	RefSeq	GI_62718812-S	ILMN_64178	LOC501485	XM_580199.1	XM_580199.1		501485	62718812	XM_580199.1	LOC501485	XP_580199.1	ILMN_1364220	0004010136	S	105	TCTATGACAGGGAGATGCAGTCATGAGATGCTCCAGTTGTTGTGGCCCAT					PREDICTED: Rattus norvegicus LOC501485 (LOC501485), mRNA.					
Rattus norvegicus	RefSeq	GI_19424249-S	ILMN_271506	CST6	NM_133566.1	NM_133566.1		171096	19424249	NM_133566.1	Cst6	NP_598250.1	ILMN_1370157	0000670390	S	692	CAGCTTCTAAAGCATGACTGCGTGCAGGTGTGACTGGCCCCAGGGTGACA	1	-	207991406-207991423:207991424-207991455	1q43	Rattus norvegicus cystatin E/M (Cst6), mRNA.	An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence IEA]; An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence ISS]	The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence IEA]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]	 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643922-A	ILMN_296520	HFE2	NM_001012080.1	NM_001012080.1		310681	58865729	NM_001012080.1	Hfe2	NP_001012080.1	ILMN_1376916	0005130026	S	2023	TGAAGTGGGCATTGTCTGGCAGAGGAAGTCAGCTTTTGGAGACTGGCACC	2	+	191333429-191333478	2q34	Rattus norvegicus hemochromatosis type 2 (juvenile) (human homolog) (Hfe2), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC105910; Rgmc	MGC105910; Rgmc
Rattus norvegicus	RefSeq	GI_62662438-S	ILMN_272559	COPE_PREDICTED	XM_001068587.1	XM_001068587.1		290659	109503963	XM_001068587.1	Cope_predicted	XP_001068587.1	ILMN_1371140	0002120162	S	979	TGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGACCCACCCC				16p14	PREDICTED: Rattus norvegicus coatomer protein complex, subunit epsilon (predicted) (Cope_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655741-S	ILMN_68908	LOC497872	XM_579754.1	XM_579754.1		497872	62655741	XM_579754.1	LOC497872	XP_579754.1	ILMN_1369933	0000380736	S	386	GCGGCTTAGCGTTCGGCCAGAGATCCAGTGTCCTGCGGCGACTTTGAAAA					PREDICTED: Rattus norvegicus LOC497872 (LOC497872), mRNA.					
Rattus norvegicus	RefSeq	GI_12621147-S	ILMN_276947	LPHN1	NM_022962.1	NM_022962.1		65096	12621147	NM_022962.1	Lphn1	NP_075251.1	ILMN_1360586	0001450025	S	5452	AGATGTGGGGTCTGGGGCTCCCTGAGGAGTGGGTCCTGGGTTTGGATCTT				19q11	Rattus norvegicus latrophilin 1 (Lphn1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Combining with alpha-latrotoxin, a potent presynaptic neurotoxin, to initiate a change in cell activity [goid 16524] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	CL1BA	CL1BA
Rattus norvegicus	RefSeq	GI_62666072-S	ILMN_56890	LOC502422	XM_577902.1	XM_577902.1		502422	62666072	XM_577902.1	LOC502422	XP_577902.1	ILMN_1373037	0003990463	S	231	CATAGGAGGACGGCCAAATGTGACGCTGGTAATAGCGGGCTCTGCTCAGC					PREDICTED: Rattus norvegicus similar to NADH:ubiquinone oxidoreductase B15 subunit (LOC502422), mRNA.					
Rattus norvegicus	RefSeq	GI_62663807-S	ILMN_265597	PRKCQ	XM_001064127.1	XM_001064127.1		85420	109506063	XM_001064127.1	PRKCQ	XP_001064127.1	ILMN_1368580	0006590408	S	3164	GGCATCCTGCAAGACAAACGACCCACGCATGCTATTTCCACTAGTCAGCC				17q12.3	PREDICTED: Rattus norvegicus protein kinase C, theta, transcript variant 2 (PRKCQ), mRNA.					
Rattus norvegicus	RefSeq	GI_58865421-A	ILMN_263775	NEDD9	NM_001011922.1	NM_001011922.1		291044	58865421	NM_001011922.1	Nedd9	NP_001011922.1	ILMN_1376442	0006290707	S	4148	CTGTGTCTGGCATGTGGAGGAAGAGGGTCCTGCAGCATTAGTGCCATTGC	17	+	29354391-29354440	17p12	Rattus norvegicus neural precursor cell expressed, developmentally down-regulated 9 (Nedd9), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13928843-S	ILMN_278796	ZRANB2	NM_031616.1	NM_031616.1		58821	13928843	NM_031616.1	Zranb2	NP_113804.1	ILMN_1359067	0003190520	S	2363	GTCGACTTTCTGAGTTGCCCAGATCTTCTAGATCCGACGTGTTAGCCTTG	2	+	255658840-255658889	2q45	Rattus norvegicus zinc finger, RAN-binding domain containing 2 (Zranb2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Zis; Znf265	Zis; Znf265
Rattus norvegicus	RefSeq	GI_38016151-S	ILMN_295383	QRFP	NM_198200.1	NM_198200.1		379044	38016151	NM_198200.1	Qrfp	NP_937843.1	ILMN_1355551	0005910152	S	116	TCCAGCTGACTGAGGGACACACCCCCCGCTCAGTTCAAAGTCCACGGCCA	3	-	10912350-10912399	3p12	Rattus norvegicus pyroglutamylated RFamide peptide (Qrfp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IMP]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence ISS]	QRFP; 26RFa	QRFP; 26RFa
Rattus norvegicus	RefSeq	GI_62665366-S	ILMN_281289	RGD1561676_PREDICTED	XM_001079196.1	XM_001079196.1		307917	109509004	XM_001079196.1	RGD1561676_predicted	XP_001079196.1	ILMN_1366015	0005900114	S	1969	GTGGCCTCTGCCCACGCTGAGGGAAGGTGAATGGGATGTGAATTTGAGGG				19q12	PREDICTED: Rattus norvegicus similar to Kelch domain containing 4 (predicted) (RGD1561676_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665368-S	ILMN_281289	RGD1561676_PREDICTED	XM_001079196.1	XM_001079196.1		307917	109509004	XM_001079196.1	RGD1561676_predicted	XP_001079196.1	ILMN_1354209	0002100167	S	1126	CCAAGTCAGAGAAGAAGAGACGGAGGCGGGGCAAAGCAGACGACCCGGAA				19q12	PREDICTED: Rattus norvegicus similar to Kelch domain containing 4 (predicted) (RGD1561676_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653468-S	ILMN_54453	LOC500967	XM_576375.1	XM_576375.1		500967	62653468	XM_576375.1	LOC500967	XP_576375.1	ILMN_1352697	0004760332	S	0	ATGGCAGGGGAATGGCACACGGAAGGTCCTCAGGAGACATTAGACACAGA					PREDICTED: Rattus norvegicus similar to LRRG00130 (LOC500967), mRNA.					
Rattus norvegicus	RefSeq	GI_62647348-S	ILMN_297896	LOC500148	NM_001035253.1	NM_001035253.1		500148	78214306	NM_001035253.1	LOC500148	NP_001030330.1	ILMN_2039648	0005670753	S	733	AATAAGCAAAAGCGCCACAGAAGCCGCAACCCAACGCCATCCTTGAGGGC	4	-	87347365-87347369:87347370-87347414	4q24	Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (LOC500148), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51491895-S	ILMN_296757	SPATA18	NM_199374.2	NM_199374.2		289586	51491895	NM_199374.2	Spata18	NP_955406.2	ILMN_1373967	0004540538	S	1702	AGGGAGAAGCTGTCACCAAGAGAGGGGCTTTTTGGACCACTGTTCGACCA	14	-	36930692-36930710:36932647-36932677	14p11	Rattus norvegicus spermatogenesis associated 18 (Spata18), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		MGC93900; spetex-1	MGC93900; spetex-1
Rattus norvegicus	RefSeq	GI_6978516-S	ILMN_295579	APOA2	NM_013112.1	NM_013112.1		25649	6978516	NM_013112.1	Apoa2	NP_037244.1	ILMN_1358319	0006450239	S	133	GGCAAGGATTTGATGGAGAAGGCCCAGCCCTCAGAGATTCAGAACCAAGC	13	+	87115508-87115557	13q24	Rattus norvegicus apolipoprotein A-II (Apoa2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence ISS]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence IEA]; A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triacylglycerol and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver [goid 34362] [evidence IEA]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence ISS]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence IEA]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence ISS]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]	Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence IEP]; Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion during immune response [goid 2740] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion during immune response [goid 2740] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEA]; Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption [goid 30300] [evidence ISS]; Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption [goid 30300] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence IDA]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IDA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence IEA]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence IEA]; The acquisition, loss or modification of a protein or lipid within a triglyceride-rich lipoprotein particle, including the hydrolysis of triglyceride by lipoprotein lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride from a triglyceride-rich lipoprotein particle [goid 34370] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8 [goid 45416] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8 [goid 45416] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids [goid 46464] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 50748] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids [goid 50995] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid [goid 60192] [evidence ISS]; Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid [goid 60192] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with high-density lipoprotein: one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 8035] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence IDA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence ISS]; Interacting selectively with an apolipoprotein receptor [goid 34190] [evidence ISS]; Interacting selectively with an apolipoprotein receptor [goid 34190] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Stops, prevents or reduces the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid [goid 55102] [evidence ISS]; Stops, prevents or reduces the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid [goid 55102] [evidence IEA]; Increases the activity of phosphatidylcholine-sterol O-acyltransferase, an enzyme that converts cholesterol and phosphatidylcholine (lecithins) to cholesteryl esters and lyso-phosphatidylcholines [goid 60228] [evidence ISS]; Increases the activity of phosphatidylcholine-sterol O-acyltransferase, an enzyme that converts cholesterol and phosphatidylcholine (lecithins) to cholesteryl esters and lyso-phosphatidylcholines [goid 60228] [evidence IEA]	APOAII	APOAII
Rattus norvegicus	RefSeq	GI_41053836-S	ILMN_266442	GPX3	NM_022525.2	NM_022525.2		64317	41053836	NM_022525.2	Gpx3	NP_071970.2	ILMN_1365802	0004280435	S	1044	CCAATGGTCCTGCTCAAACCTGAACATCATTCTTGGGGCCAGCATCTCCC	10	+	40318984-40319033	10q22	Rattus norvegicus glutathione peroxidase 3 (Gpx3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IDA]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence ISS]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence IMP]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]	Gpxp	Gpxp
Rattus norvegicus	RefSeq	GI_16758207-S	ILMN_262758	SRM	NM_053464.1	NM_053464.1		84596	16758207	NM_053464.1	Srm	NP_445916.1	ILMN_1358108	0001940600	S	1057	GGACCAAACTCCCAGATGACTCTTGCCCACCAACCAAGTGTTACAGGCCC	5	+	165675481-165675530	5q36	Rattus norvegicus spermidine synthase (Srm), mRNA.		The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane [goid 8295] [evidence IDA]	Catalysis of the reaction: S-adenosylmethioninamine + putrescine = 5'-methylthioadenosine + spermidine [goid 4766] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647003	ILMN_292421	LOC500077	NM_001024325.1	NM_001024325.1		500077	66730275	NM_001024325.1	LOC500077	NP_001019496.1	ILMN_1651163	0004810035	S	1299	AGCTGCCCACAGTTCCCTGCCATATCCGAGAGCAGGAGGCTCTATCAGAC	4	-	62259926-62259975	4q22	Rattus norvegicus similar to RIKEN cDNA 3110062M04 (LOC500077), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62656295-S	ILMN_280236	TRAPPC1	NM_001039378.1	NM_001039378.1		287427	86439954	NM_001039378.1	Trappc1	NP_001034467.1	ILMN_1354588	0004070373	S	465	TCGAGCTGGCTGACACATCTACCTCACCCCTCAGAAGAACCCGTGACTGC	10	+	56118730-56118742:56118743-56118779	10q24	Rattus norvegicus trafficking protein particle complex 1 (Trappc1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IEA]; A large complex present on the cis-Golgi that acts prior to SNARE complex assembly to mediate vesicle docking and fusion [goid 30008] [evidence ISS]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650191-S	ILMN_68541	G1P2_PREDICTED	XM_216605.2	XM_216605.2		298693	62650191	XM_216605.2	G1p2_predicted	XP_216605.2	ILMN_1367988	0000780746	S	422	ACCAACAGGGGTGGCCTTGGCTCTCCATCATCACCCTTTGCCTGCTTCTG				5q36	PREDICTED: Rattus norvegicus interferon, alpha-inducible protein (clone IFI-15K) (predicted) (G1p2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873123-S	ILMN_267505	NOC2L	NM_001033897.1	NM_001033897.1		313777	76559928	NM_001033897.1	Noc2l	NP_001029069.1	ILMN_1372369	0000060487	S	2009	GTGGCAAAGAGCGGCTAGAAGACCTGAACTTCCCAGAGATCAAAAGGCGG	5	+	173080922-173080935:173081216-173081251	5q36	Rattus norvegicus nucleolar complex associated 2 homolog (S. cerevisiae) (Noc2l), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124822	MGC124822
Rattus norvegicus	RefSeq	GI_62718475-S	ILMN_62854	LOC303730	XM_221185.4	XM_221185.4		303730	109513680	XM_221185.4	LOC303730	XP_221185.4	ILMN_1370475	0000070176	S	1733	GTCAGACCTGCCTTCCAGTCTCTGGTTTTGCTTTGATGCTTGACCGGGGG	Un|NW_047902.1	+	71055-71104		PREDICTED: Rattus norvegicus similar to chromobox homolog 2 (LOC303730), mRNA.					
Rattus norvegicus	RefSeq	GI_62717956-S	ILMN_57665	LOC317070	XM_229775.4	XM_229775.4		317070	109513675	XM_229775.4	LOC317070	XP_229775.4	ILMN_1367265	0001090093	S	2048	CCCTCCTATTGGATCCCAGGAAGTGGAAACTCTCCTTGGGGTGTATCGTG	Un|NW_047900.1	+	471334-471383		PREDICTED: Rattus norvegicus similar to nidogen 2 (LOC317070), mRNA.		The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47577004-S	ILMN_284287	OLR279	NM_001000226.1	NM_001000226.1		293429	47577004	NM_001000226.1	Olr279	NP_001000226.1	ILMN_1360064	0003870215	S	591	CCCTGCAGTTGTTCCCTCGTTCACAGCTGGCTCCATCATTATGGTGACAG	1	-	166161137-166161186	1q33	Rattus norvegicus olfactory receptor 279 (Olr279), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr279	Olr279
Rattus norvegicus	RefSeq	GI_47576704-S	ILMN_272342	OLR1720	NM_001001116.1	NM_001001116.1		406015	47576704	NM_001001116.1	Olr1720	NP_001001116.1	ILMN_1374337	0002320592	S	428	CTGGGTCATGGGGAGTAGCTCACTGTGCATCTCTGGTCTATACTTTGTGC	20	-	1143247-1143296	20p12	Rattus norvegicus olfactory receptor 1720 (Olr1720), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1720	Olr1720
Rattus norvegicus	RefSeq	GI_16758257-S	ILMN_284880	MTERF	NM_053499.1	NM_053499.1		85261	16758257	NM_053499.1	Mterf	NP_445951.1	ILMN_1368966	0006180014	S	1344	GCTAAACTGAAGAGATTAAGTGGGTAGGCCAGTGCAGGCGGAGTCACCAG	4	+	26948952-26948978:26948979-26949001	4q13	Rattus norvegicus mitochondrial transcription termination factor (Mterf), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The process by which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA [goid 6353] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649619	ILMN_61613	LOC500546	XM_575907.1	XM_575907.1		500546	62649619	XM_575907.1	LOC500546	XP_575907.1	ILMN_1650534	0000060739	S	833	TTCAGTGCTTCCCGACCTCCCAGAGCTGCCCTACAGGTTCAGACTTCACG				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20508 (LOC500546), mRNA.					
Rattus norvegicus	RefSeq	GI_47577076-S	ILMN_273461	OLR308	NM_001000955.1	NM_001000955.1		405304	47577076	NM_001000955.1	Olr308	NP_001000955.1	ILMN_1360209	0005360164	S	402	CAGGATGAGCCCACAATTGTGTGGGGTAGTGGCCATTGGTGTGTGGTCTG	1	+	200676703-200676752	1q41	Rattus norvegicus olfactory receptor 308 (Olr308), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr308	Olr308
Rattus norvegicus	RefSeq	GI_57527629-S	ILMN_271805	LY49I6	NM_001009718.1	NM_001009718.1		494193	57527629	NM_001009718.1	Ly49i6	NP_001009718.1	ILMN_1349560	0003940687	S	1045	ACAGAGACCTTCTTTAGTGTGTTTCCAGGCTTTGCCTCACAACATTGAGG	4	-	168483997-168484046	4q42	Rattus norvegicus Ly49 inhibitory receptor 6 (Ly49i6), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653352-S	ILMN_266789	RGD1308472_PREDICTED	XM_001074574.1	XM_001074574.1		315484	109484302	XM_001074574.1	RGD1308472_predicted	XP_001074574.1	ILMN_1361501	0005860170	S	2860	CCAGGTGGCTGTACTCCAATCCCAGAGTCAGACCTAGAGGAAAGATCGCT				8q13	PREDICTED: Rattus norvegicus similar to E130103I17Rik protein (predicted), transcript variant 4 (RGD1308472_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650182-S	ILMN_68126	B3GALT6_PREDICTED	XM_233721.3	XM_233721.3		298690	109475940	XM_233721.3	B3galt6_predicted	XP_233721.1	ILMN_1362906	0006940017	S	633	GGCAACTCTGCGACTACTATCTGCCCTACGCTCTGGGCGGTGGATATGTC	5	-	172835103-172835152	5q36	PREDICTED: Rattus norvegicus UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6 (predicted) (B3galt6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651846-S	ILMN_62591	LOC500808	XM_580123.1	XM_580123.1		500808	62651846	XM_580123.1	LOC500808	XP_580123.1	ILMN_1370770	0000610605	S	1105	TCTCTCCAAAGTCATGCTTTCTCTGTGGACCTCAGAAAAGTTGACAGTGC				7q12	PREDICTED: Rattus norvegicus LOC500808 (LOC500808), mRNA.					
Rattus norvegicus	RefSeq	GI_62650201-S	ILMN_69077	LOC503001	XM_578513.1	XM_578513.1		503001	62650201	XM_578513.1	LOC503001	XP_578513.1	ILMN_1369465	0001980427	S	4170	AGACTTAGCCAGAAGTGTGCTGAAGAGGCTGGGGTGTCTGGGTCTGGGTG					PREDICTED: Rattus norvegicus similar to transcription factor MEL1 (LOC503001), mRNA.					
Rattus norvegicus	RefSeq	GI_62664456-S	ILMN_52236	RGD1561114_PREDICTED	XM_577620.2	XM_577620.2		502163	109506590	XM_577620.2	RGD1561114_predicted	XP_577620.2	ILMN_1368360	0000770364	S	113	GGCCCTTTTCGCGAAAGGGAACAAATTTGACCAAGGCCAGCCAAGGTCAG	18	-	42150937-42150986	18q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1561114_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650598-S	ILMN_67756	LOC366596	XM_345657.2	XM_345657.2		366596	62650598	XM_345657.2	LOC366596	XP_345658.2	ILMN_1371602	0001400673	S	919	CTGCTGTTAAGAAGGCTCAATTCCTGGCAGAAGACTGGGGTGTGCAGCCG					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (LOC366596), mRNA.					
Rattus norvegicus	RefSeq	GI_6981471-S	ILMN_57660	REN1	NM_012642.3	NM_012642.3		24715	77404422	NM_012642.3	Ren1	NP_036774.3	ILMN_1354513	0000290600	S	953	TTACCAGGGCAACTTTCACTACGTGAGCATCAGCAAGGCCGGCTCCTGGC	13	+	46273240-46273289	13q13	Rattus norvegicus renin 1 (Ren1), mRNA.				RENAA; Ren; RATRENAA	RENAA; Ren; RATRENAA
Rattus norvegicus	RefSeq	GI_62663464-S	ILMN_56527	LOC498736	XM_574013.2	XM_574013.2		498736	109504786	XM_574013.2	LOC498736	XP_574013.2	ILMN_1350418	0006590504	S	1456	CTCGGATACATTGTGCACCCTTAGTGAACTTCTGTTGTCCTCCAGCATGG	17	+	37142868-37142917	17p12	PREDICTED: Rattus norvegicus similar to tubulin, beta 2 (LOC498736), mRNA.					
Rattus norvegicus	RefSeq	GI_62665186-I	ILMN_59145	DPEP2_PREDICTED	XM_574232.1	XM_574232.1		291984	62665186	XM_574232.1	Dpep2_predicted	XP_574232.1	ILMN_1375976	0006130075	S	1347	AAGAAGGAGCTGTGGGAGGCACGGGCGCTGCAGGGAAAACCAGAACTCAT				19q12	PREDICTED: Rattus norvegicus dipeptidase 2 (predicted) (Dpep2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34864822-S	ILMN_70361	RGD1565045_PREDICTED	XM_212849.3	XM_212849.3		292152	109460297	XM_212849.3	RGD1565045_predicted	XP_212849.3	ILMN_1358263	0002120161	S	1488	TGGGAACCCCAACAGCGAAGATCTACCTTACTGGCCTGTGTTGGACCATA	1	+	267814630-267814632:267815052-267815098	1q55	PREDICTED: Rattus norvegicus similar to carboxylesterase isoenzyme gene (predicted) (RGD1565045_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742836-S	ILMN_266737	PRMT3	NM_053557.1	NM_053557.1		89820	25742836	NM_053557.1	Prmt3	NP_446009.1	ILMN_1373328	0004210605	S	2217	CAGCTGTACCCCTCAGTGTTCTCCAGCCATAGCCTAGCAATGTGGGGAAG	1	+	99668368-99668417	1q22	Rattus norvegicus protein arginine methyltransferase 3 (Prmt3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine [goid 19919] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence TAS]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to an amino group of an arginine residue in a protein substrate [goid 16274] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the addition of a second methyl group to methylated peptidyl-arginine. Methylation is on the same terminal nitrogen (omega nitrogen) residue that was previously methylated, resulting in asymmetrical peptidyl-N(omega),N(omega)-dimethylated arginine residues [goid 35242] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Prmt3	Prmt3
Rattus norvegicus	RefSeq	GI_53850643-S	ILMN_299658	FAM151A	NM_001005558.1	NM_001005558.1		313430	53850643	NM_001005558.1	Fam151a	NP_001005558.1	ILMN_1362368	0001690253	S	1671	AGTGCTGGGAACAGCTATGCAGATGTGTGGGCTGGACTGTGGGCGGCCAG	5	+	127821636-127821685	5q34	Rattus norvegicus family with sequence similarity 151, member A (Fam151a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_6978524-S	ILMN_275253	FASLG	NM_012908.1	NM_012908.1		25385	6978524	NM_012908.1	Faslg	NP_037040.1	ILMN_1372914	0004670161	S	1229	CCTTCCAGGGTGGGTCTACTTGCTACCTCACAGGAGGCCGTCTTTTAGAC	13	-	77473294-77473343	13q22	Rattus norvegicus Fas ligand (TNF superfamily, member 6) (Faslg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The process of apoptosis in inflammatory cells, any cell participating in the inflammatory response to a foreign substance e.g. neutrophil, macrophage [goid 6925] [evidence IGI]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS];  [goid 8625] [evidence IMP]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Programmed cell death that occurs in the developing retina [goid 46666] [evidence ISS]	Interacting selectively with a death receptor [goid 5123] [evidence IC ]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IMP]	Apt1Lg1; Fasl; Tnfsf6	Apt1Lg1; Fasl; Tnfsf6
Rattus norvegicus	RefSeq	GI_8394383-S	ILMN_270806	SLC23A2	NM_017316.1	NM_017316.1		50622	8394383	NM_017316.1	Slc23a2	NP_059012.1	ILMN_1351825	0005130156	S	2831	CTGGCCGAGACACCCTATTTGGCATTTTCACTGCTGGCTGGTGTGATGGG	3	-	119796557-119796606	3q36	Rattus norvegicus solute carrier family 23 (nucleobase transporters), member 2 (Slc23a2), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The directed movement of L-ascorbic acid into, out of, within or between cells. L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, is vitamin C and has co-factor and anti-oxidant activities in many species [goid 15882] [evidence IMP]; The chemical reactions and pathways involving L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 19852] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ascorbate(out) + Na+(out) = ascorbate(in) + Na+(in) [goid 8520] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ascorbate(out) + Na+(out) = ascorbate(in) + Na+(in) [goid 8520] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ascorbate(out) + Na+(out) = ascorbate(in) + Na+(in) [goid 8520] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	SVCT2	SVCT2
Rattus norvegicus	RefSeq	GI_11067414-S	ILMN_281468	ERBB4	NM_021687.1	NM_021687.1		59323	11067414	NM_021687.1	Erbb4	NP_067719.1	ILMN_1361677	0001500138	S	3734	AGAAAGCATTTGACAACCCCGACTACTGGAACCACAGCCTGCCACCCCGG	9	-	66844109-66844158	9q32	Rattus norvegicus v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) (Erbb4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence TAS]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEP]; Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32230] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence NAS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence IMP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IMP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]; The process that organizes a synapse so that it attains its fully functional state. Synaptic maturation plays a critical role in the establishment of effective synaptic connections in early development [goid 60074] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928761-S	ILMN_266757	CSN3	NM_031562.1	NM_031562.1		29188	13928761	NM_031562.1	Csn3	NP_113750.1	ILMN_1353556	0001660373	S	552	CTGCCACAGTCCCAGTGACCTCACCTGCAGCATAAAAGCGCAAAGGAAAC	14	-	21677032-21677051:21677052-21677081	14p21	Rattus norvegicus casein kappa (Csn3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			Csnk	Csnk
Rattus norvegicus	RefSeq	GI_62648198-S	ILMN_270338	LOC683522	XM_001066346.1	XM_001066346.1		683522	109474277	XM_001066346.1	LOC683522	XP_001066346.1	ILMN_1368816	0001580408	S	1686	CATCTACCGCCTGGTGAAAGAATGAGAGACTTGGAGAGCTATGGTGGGGG					PREDICTED: Rattus norvegicus similar to Transcriptional enhancer factor TEF-3 (TEA domain family member 4) (TEAD-4) (ETF-related factor 2) (ETFR-2) (TEF-1-related factor 1) (TEF-1-related factor FR-19) (RTEF-1) (LOC683522), mRNA.					
Rattus norvegicus	RefSeq	GI_62657520-S	ILMN_280166	RP1H	XM_001058247.1	XM_001058247.1		312937	109507816	XM_001058247.1	Rp1h	XP_001058247.1	ILMN_1374817	0004610154	S	2896	AGGCGGATGCCGTCTTAGGACTGTTCTTAGTGTACAGACTGTGGTGGGCG	19	-	19593259-19593308	19p11	PREDICTED: Rattus norvegicus retinitis pigmentosa 1 homolog (human) (Rp1h), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]	The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659836-S	ILMN_48889	LOC289281	XM_222968.3	XM_222968.3		289281	62659836	XM_222968.3	LOC289281	XP_222968.3	ILMN_1351588	0000380100	S	788	ATACAAGCTGAGGCACGGGCCAATGGGAGTATACAAGCTGAGGCACGGGC					PREDICTED: Rattus norvegicus similar to hydroxyproline-rich glycoprotein precursor (LOC289281), mRNA.					
Rattus norvegicus	RefSeq	GI_62662704-S	ILMN_300914	VPS37A	NM_001024867.1	NM_001024867.1		290775	67846011	NM_001024867.1	Vps37a	NP_001020038.1	ILMN_1373680	0000450348	S	1395	CCAGGTGATAGCCATGCACAGCCAGTTCCATGCTCCTCTCTAGATTTTCC	16	-	55078065-55078072:55079451-55079492	16q12.1	Rattus norvegicus vacuolar protein sorting 37 homolog A (S. cerevisiae) (Vps37a), mRNA.					
Rattus norvegicus	RefSeq	GI_62652950	ILMN_49359	PPHLN1_PREDICTED	XM_345865.3	XM_345865.3		366975	109481173	XM_345865.3	Pphln1_predicted	XP_345866.3	ILMN_1650933	0001990390	S	3743	GAAGCTATTTCCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGTCAGTG	7	+	131957775-131957824	7q35	PREDICTED: Rattus norvegicus periphilin 1 (predicted) (Pphln1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16924015-S	ILMN_289150	KEAP1	NM_057152.1	NM_057152.1		117519	16924015	NM_057152.1	Keap1	NP_476493.1	ILMN_1366907	0005420280	S	1945	CCTGCTGAAGCACTTGGACTACCTGAGCACTGGCCACAGGACAGAAGCTG	8	-	20259362-20259411	8q13	Rattus norvegicus Kelch-like ECH-associated protein 1 (Keap1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermal cell differentiation [goid 45604] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermal cell differentiation [goid 45604] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Inrf2	Inrf2
Rattus norvegicus	RefSeq	GI_62647275-S	ILMN_59196	LOC500129	XM_575481.1	XM_575481.1		500129	62647275	XM_575481.1	LOC500129	XP_575481.1	ILMN_1351151	0006450372	S	1786	GGCCATCTAAACCTGCGAGGCTACAAGAGAACCCTGGGTGGTTAAAGAAC				4q24	PREDICTED: Rattus norvegicus similar to transcription factor HOXA13 (LOC500129), mRNA.					
Rattus norvegicus	RefSeq	GI_62643163-S	ILMN_57109	RGD1565000_PREDICTED	XM_574894.2	XM_574894.2		499570	109464597	XM_574894.2	RGD1565000_predicted	XP_574894.2	ILMN_1372168	0004200026	S	276	GGTTCAAGTTCAGGACTGGGATGGCAAAGAAGCCACGATCCGCAGGAGGC	2	+	93508474-93508523	2q23	PREDICTED: Rattus norvegicus similar to Myelin P2 protein (predicted) (RGD1565000_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644245-S	ILMN_285976	HIAT1_PREDICTED	XM_001067587.1	XM_001067587.1		295398	109461075	XM_001067587.1	Hiat1_predicted	XP_001067587.1	ILMN_1349287	0003440315	S	2196	CCACTGAGGATCTAAGTTGGGGCAGCCAGAGCCTGTGCATCCGTGTTCTG				1q12	PREDICTED: Rattus norvegicus hippocampus abundant gene transcript 1 (predicted) (Hiat1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639830-S	ILMN_66848	LOC361584	XM_341866.2	XM_341866.2		361584	62639830	XM_341866.2	LOC361584	XP_341867.2	ILMN_1350219	0006200546	S	1307	GGATCATTCAGCCACTGTCATGGATTAGTCTCTCAGGCTGTGGAGGCAGC				1q22	PREDICTED: Rattus norvegicus similar to Myeloid cell surface antigen CD33 precursor (gp67) (Siglec-3) (predicted) (LOC361584), mRNA.					
Rattus norvegicus	RefSeq	GI_62660852-S	ILMN_265890	RGD1311920_PREDICTED	XM_001055784.1	XM_001055784.1		305544	109501029	XM_001055784.1	RGD1311920_predicted	XP_001055784.1	ILMN_1367306	0006620129	S	3641	TCACTCCACTGATGCTCGCTGGTTGTGGGCCGGGATCACTGTCAGGACGT				14q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130023F12 gene (predicted) (RGD1311920_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34935655-S	ILMN_69693	LOC366770	XM_345757.1	XM_345757.1		366770	34935655	XM_345757.1	LOC366770	XP_345758.1	ILMN_1349898	0005050408	S	2	GGCTGAGCAAGTAAAGATACCTTCTGGTGTCCACTCTGAGGTAAAGCTGC				6q33	PREDICTED: Rattus norvegicus similar to J558 Ig variable region (LOC366770), mRNA.					
Rattus norvegicus	RefSeq	GI_62666333-S	ILMN_69372	LOC499481	XM_574804.1	XM_574804.1		499481	62666333	XM_574804.1	LOC499481	XP_574804.1	ILMN_1349312	0004280603	S	1208	CCTGGACTGATGTCATACAGACCCTAAGAGAACACAAATGCCTGCCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499481), mRNA.					
Rattus norvegicus	RefSeq	GI_62643512-S	ILMN_270767	RGD1565059_PREDICTED	XR_008127.1	XR_008127.1		499630	109466732	XR_008127.1	RGD1565059_predicted		ILMN_1362740	0004070441	S	744	GGGTCTCAGCGCCACCAAAGAGGGTCATTACGACAGGTTTCGCAGGGCTT				2q31	PREDICTED: Rattus norvegicus similar to hypothetical protein E130311K13 (predicted) (RGD1565059_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641534-S	ILMN_292438	LOC679295	XM_001055499.1	XM_001055499.1		679295	109463060	XM_001055499.1	LOC679295	XP_001055499.1	ILMN_1368742	0006290706	S	6407	CCCATACACCACCAGAGGTGGTTTCCCTTGGGTGGCTTCTCTGTGTGTAC					PREDICTED: Rattus norvegicus similar to Dedicator of cytokinesis protein 1 (180 kDa protein downstream of CRK) (DOCK180), transcript variant 2 (LOC679295), mRNA.					
Rattus norvegicus	RefSeq	GI_62653526-S	ILMN_286215	RGD1311744_PREDICTED	XM_001062386.1	XM_001062386.1		300608	109484527	XM_001062386.1	RGD1311744_predicted	XP_001062386.1	ILMN_1360078	0000730148	S	2192	TGGAAGACATGACGGCTGCACGCCCTAGTGAGGTATTAGAACCTTCGGCT				8q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830475I06 (predicted) (RGD1311744_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758205-S	ILMN_68857	NFS1	NM_053462.2	NM_053462.2		84594	76880448	NM_053462.2	Nfs1	NP_445914.2	ILMN_2040171	0005900241	S	1094	TTGCGTATGTGGAAGGGGAAAGCCTGCTGATGGCACTCAAGGACGTTGCC	3	-	146532123-146532172	3q42	Rattus norvegicus NFS1 nitrogen fixation 1 homolog (S. cerevisiae) (Nfs1), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid [goid 6534] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The incorporation of iron into a metallo-sulfur cluster [goid 18283] [evidence ISS]; The incorporation of iron into a metallo-sulfur cluster [goid 18283] [evidence IEA]; The incorporation of iron into a metallo-sulfur cluster [goid 18283] [evidence IEA]; The incorporation of iron into a metallo-sulfur cluster [goid 18283] [evidence IEA]; The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid [goid 6534] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The incorporation of iron into a metallo-sulfur cluster [goid 18283] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine [goid 31071] [evidence IEA]; Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine [goid 31071] [evidence ISS]; Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine [goid 31071] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine [goid 31071] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine [goid 31071] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	MGC124952; Nifs	MGC124952; Nifs
Rattus norvegicus	RefSeq	GI_62660059	ILMN_56295	LOC501386	XM_576799.2	XM_576799.2		501386	109513308	XM_576799.2	LOC501386	XP_576799.2	ILMN_1650708	0000730039	S	498	TGGACAGGTTCCTGAGACGCTGGATGTGAAATGCCGCACACAACACTCGG	Un|NW_047878.1	+	3247940-3247989		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501386), mRNA.					
Rattus norvegicus	RefSeq	GI_62718241-S	ILMN_56295	LOC501386	XM_576799.2	XM_576799.2		501386	109513308	XM_576799.2	LOC501386	XP_576799.2	ILMN_1362682	0005550333	S	373	ACTTGGAAGAAGTGCTGGGTGGGGAGGGTCTTCTGACCTGGTGTGGGGAG	Un|NW_047878.1	+	3247815-3247864		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501386), mRNA.					
Rattus norvegicus	RefSeq	GI_62645144-S	ILMN_277146	MRC2_PREDICTED	XM_001069062.1	XM_001069062.1		295631	109469947	XM_001069062.1	Mrc2_predicted	XP_001069062.1	ILMN_1358009	0000630431	S	4014	ACGGAAGCCAGACATGGACCACCTCAAGCCCCATCCGTGTGTTGTCCTGA				3q21	PREDICTED: Rattus norvegicus mannose receptor, C type 2 (predicted) (Mrc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646542-S	ILMN_68031	RGD1562795_PREDICTED	XM_342603.3	XM_342603.3		362289	109469368	XM_342603.3	RGD1562795_predicted	XP_342604.2	ILMN_1352152	0006020048	S	1368	CCTGTCTGCTTCTGCTTCAGGAGGGTTTGATGTGCAGGTCCTTCTGTGTC	3	+	170524622-170524671	3q43	PREDICTED: Rattus norvegicus similar to Lck-interacting transmembrane adaptor protein LIME (predicted) (RGD1562795_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758185-S	ILMN_300291	SLCO1C1	NM_053441.1	NM_053441.1		84511	16758185	NM_053441.1	Slco1c1	NP_445893.1	ILMN_1357978	0003710332	S	2438	GTCCTCAAGCGTCAAAAAGGAGACGTGTGCCGCAAGGGATCATGGGTTGC	4	+	179006445-179006494	4q44	Rattus norvegicus solute carrier organic anion transporter family, member 1c1 (Slco1c1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of bile acid and bile salts into, out of, within or between cells [goid 15721] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of bile acid from one side of the membrane to the other. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 15125] [evidence IDA]	Slc21a14; Oatp14; Bsat1	Slc21a14; Oatp14; Bsat1
Rattus norvegicus	RefSeq	GI_62643610-I	ILMN_55916	FXR1H_PREDICTED	XM_578009.1	XM_578009.1		361927	62643610	XM_578009.1	Fxr1h_predicted	XP_578009.1	ILMN_1376023	0003170541	S	2128	ATCGTAGCCGCAGGCGTCGTTTCAGGGGTCAGGCAGAAGATAGACAGCCA				2q25	PREDICTED: Rattus norvegicus fragile X mental retardation gene 1, autosomal homolog (predicted) (Fxr1h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302023-S	ILMN_294294	HYOU1	NM_001034028.1	NM_001034028.1		192235	77404374	NM_001034028.1	Hyou1	NP_001029200.1	ILMN_1366767	0000780039	S	3002	GCAGACAGCAGGGCAGAAGCGGCCTTTGAAGAATGATGAGCTGTGACCCC	8	+	47357552-47357597:47357598-47357601	8q22	Rattus norvegicus hypoxia up-regulated 1 (Hyou1), transcript variant 2, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Cab140; Orp150	Cab140; Orp150
Rattus norvegicus	RefSeq	GI_21426780-S	ILMN_279383	TRIB3	NM_144755.1	NM_144755.1		246273	21426780	NM_144755.1	Trib3	NP_653356.1	ILMN_1349221	0002230095	S	1663	ACAAGTGAGGCCAAGCTGGGATTGTGGCCTCCAGGCAGGAGAACCTGCTT	3	-	142664344-142664393	3q41	Rattus norvegicus tribbles homolog 3 (Drosophila) (Trib3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence NAS]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence NAS]; Any process that modulates the frequency, rate or extent of MAP kinase activity [goid 43405] [evidence ISS]; Any process that modulates the frequency, rate or extent of MAP kinase activity [goid 43405] [evidence ISS]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	NIPK	NIPK
Rattus norvegicus	RefSeq	GI_47576022-S	ILMN_279453	OLR1439	NM_001000016.1	NM_001000016.1		287328	47576022	NM_001000016.1	Olr1439	NP_001000016.1	ILMN_1364533	0001850110	S	298	CAAGTCTTTATGTTTTTGACTCTTGCTGGCTGTGAAGCCCTCCTGCTGGG	10	+	44704035-44704084	10q22	Rattus norvegicus olfactory receptor 1439 (Olr1439), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1439	Olr1439
Rattus norvegicus	RefSeq	GI_62654677-S	ILMN_69701	TBN_PREDICTED	XM_236948.4	XM_236948.4		316216	109485697	XM_236948.4	Tbn_predicted	XP_236948.3	ILMN_1351643	0001400373	S	720	CAGACTCCTCGGAGCAGGACGAGCAGACAGATACCGAGAACATCGCGCTC	9	+	8959924-8959973	9q12	PREDICTED: Rattus norvegicus taube nuss homolog (mouse) (predicted) (Tbn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660869-S	ILMN_282746	ZRSR1	NM_001017504.1	NM_001017504.1		498425	62945359	NM_001017504.1	Zrsr1	NP_001017504.1	ILMN_1368229	0002970020	S	1268	AGAAGAGGGCAGCAGTCCAGGTCCGCAAAGCCAGAGCCACAGAACCTGAG	14	+	103659147-103659195:103659196-103659196	14q22	Rattus norvegicus zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 (Zrsr1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641518-S	ILMN_67221	ZRANB1_PREDICTED	XM_215101.3	XM_215101.3		293571	62641518	XM_215101.3	Zranb1_predicted	XP_215101.3	ILMN_1364834	0003290465	S	2937	GCCCTGTAAAGAGGGTTCTTACTCAACTCTGGGCAGGTGCATTTGTGCAC					PREDICTED: Rattus norvegicus zinc finger, RAN-binding domain containing 1 (predicted) (Zranb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665947	ILMN_283702	DNAJB12	NM_001013907.1	NM_001013907.1		294513	62078544	NM_001013907.1	Dnajb12	NP_001013929.1	ILMN_1650772	0004730010	S	2	AAGGAGGGGCGGAGGGTTATGTCATCCTTCCGCGCCGGCCTGCCCCGCGA	20	+	27188066-27188115	20q11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 12 (Dnajb12), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC94679	MGC94679
Rattus norvegicus	RefSeq	GI_62641910-S	ILMN_64699	RGD1560913_PREDICTED	XM_574627.2	XM_574627.2		499322	109459932	XM_574627.2	RGD1560913_predicted	XP_574627.1	ILMN_1374557	0000460195	S	2054	AGAGGATTAAGTGCTGATGTGGGATCCGAGGGTCAGGAGATGCTAAGATG	1	+	215596261-215596310	1q43	PREDICTED: Rattus norvegicus similar to expressed sequence AW413625 (predicted) (RGD1560913_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664853	ILMN_65012	LOC297260	XM_231999.3	XM_231999.3		297260	62664853	XM_231999.3	LOC297260	XP_231999.3	ILMN_1650779	0004920497	S	1	ATGAAGTCGTTATACAACAGCCCAGGCTCCTTTAAGGGCAGCTGCCAGGA				19p14	PREDICTED: Rattus norvegicus similar to Ig variable region, light chain (LOC297260), mRNA.					
Rattus norvegicus	RefSeq	GI_17105375-S	ILMN_270190	SMU1	NM_057195.1	NM_057195.1		117541	17105375	NM_057195.1	Smu1	NP_476543.1	ILMN_1373960	0004280484	S	1479	AGGATGTGATCGGAATTGCACACCACCCGCACCAGAACTTGATTGCCACC	5	-	58115269-58115318	5q22	Rattus norvegicus smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) (Smu1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			Smu-1; Bwd	Smu-1; Bwd
Rattus norvegicus	RefSeq	GI_9506794-S	ILMN_58080	HGS	NM_019387.1	NM_019387.1		56084	9506794	NM_019387.1	Hgs	NP_062260.1	ILMN_2040100	0004610543	S	2054	AGGCTACCAGAATGTGGCTTCTCAGGCCCCACAGAGCCTCCCAGCCATCT				10q32.3	Rattus norvegicus HGF-regulated tyrosine kinase substrate (Hgs), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding an early endosome [goid 31901] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence NAS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hrs	Hrs
Rattus norvegicus	RefSeq	GI_62646687-S	ILMN_277637	RSBN1L_PREDICTED	XM_001063020.1	XM_001063020.1		311987	109472972	XM_001063020.1	Rsbn1l_predicted	XP_001063020.1	ILMN_1358618	0001240132	S	2939	GCCTGTCCATACCCGGGAAGTATAACGAGTGCACTTAGGGCCAGATGCAC				4q11	PREDICTED: Rattus norvegicus round spermatid basic protein 1-like (predicted) (Rsbn1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648582-S	ILMN_289243	TMEM68_PREDICTED	XM_001068973.1	XM_001068973.1		312946	109476077	XM_001068973.1	Tmem68_predicted	XP_001068973.1	ILMN_1373136	0002450338	S	918	GCACCAAAGGATACCGGGGAACATTAGGAGTGCTTTGCTGGACCGCTTTC				5q12	PREDICTED: Rattus norvegicus transmembrane protein 68 (predicted) (Tmem68_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663355-S	ILMN_288489	RGD1565598_PREDICTED	XM_001055923.1	XM_001055923.1		502118	109505542	XM_001055923.1	RGD1565598_predicted	XP_001055923.1	ILMN_1374263	0004920687	S	1896	GCTCCAGCTCCTCCCACAGGAAACAGCAAAGATGGATAGGTTCAACAGCC				17p14	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (predicted) (RGD1565598_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.18139	ILMN_161160	RN.18139	Rn.18139		Rn.18139		21988434	BQ779962			ILMN_1530197	0000940300	S	39	ATATAAAATCATGTCAACCAAATAAAACCGGTCAAAACTACATCACTTAG					UI-R-FF0-cpc-k-01-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cpc-k-01-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62662108-S	ILMN_65096	LOC498568	XM_573843.1	XM_573843.1		498568	62662108	XM_573843.1	LOC498568	XP_573843.1	ILMN_1368455	0004480408	S	601	GGAGCGACTCGGCTGTGTACTTCTGTGCTCTGAGCACACAGTGTCTGAGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC498568), mRNA.					
Rattus norvegicus	RefSeq	GI_48675847-S	ILMN_298110	PAFAH1B1	NM_031763.3	NM_031763.3		83572	48675847	NM_031763.3	Pafah1b1	NP_113951.1	ILMN_1374870	0001450068	S	4064	CGAGCCCTGTTTGAATAATGAAGGGTGGCGGGGCAACATCCACATCTGGC				10q24	Rattus norvegicus platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa (Pafah1b1), mRNA.	Any of the spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell [goid 235] [evidence IEA]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence IEA]; A specialized primary cilium that contains a 9 + 0 arrangement of microtubules, radial spokes, and a dynein apparatus, but no inner doublet microtubules. Motile primary cilia display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface [goid 31512] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	A cell cycle process that sets the alignment of mitotic spindle relative to other cellular structures [goid 132] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; The formation of the acrosome from the spermatid Golgi [goid 1675] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IMP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons [goid 8090] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types [goid 17145] [evidence IMP]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence IEA]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with dynein, the multisubunit protein complex that is associated with microtubules [goid 45502] [evidence IEA]; Interacting selectively with an intermediate chain of the dynein complex [goid 45505] [evidence IDA]; Catalysis of the reaction: 1-radyl-2-acyl-sn-glycero-3-phospholipid + 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine = 1-alkyl-2-lyso-sn-glycero-3-phosphocholine + 1-radyl-2-acetyl-sn-glycero-3-phospholipid [goid 47179] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_6978552-S	ILMN_301781	ATP1B3	NM_012913.1	NM_012913.1		25390	6978552	NM_012913.1	Atp1b3	NP_037045.1	ILMN_1369650	0005080593	S	1213	GCTCCCAATCCCAAACATGCAGAGTGGGGGTCTCGTCGTCTTCTGTGTGT	8	-	101406432-101406481	8q31	Rattus norvegicus ATPase, Na+/K+ transporting, beta 3 polypeptide (Atp1b3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	NKAB3S	NKAB3S
Rattus norvegicus	RefSeq	GI_31377515-S	ILMN_278534	PLD2	NM_033299.2	NM_033299.2		25097	31377515	NM_033299.2	Pld2	NP_150641.2	ILMN_1350932	0006860438	S	4271	GGAAGGCATCATAGAAGGCAGTGGGGGTGGGTGAGAATGTGACCAGAAGG	10	+	57438986-57439035	10q24	Rattus norvegicus phospholipase D2 (Pld2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The process by which a G-protein coupled receptor is taken up into an endocytic vesicle [goid 2031] [evidence IEA]; The process by which a G-protein coupled receptor is taken up into an endocytic vesicle [goid 2031] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of mast cell degranulation [goid 43306] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport [goid 48260] [evidence IMP]	Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate [goid 4630] [evidence IDA]; Interacting selectively with protein kinase C [goid 5080] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Pldc	Pldc
Rattus norvegicus	RefSeq	GI_62650774-S	ILMN_53841	LOC500664	XM_576042.1	XM_576042.1		500664	62650774	XM_576042.1	LOC500664	XP_576042.1	ILMN_1350395	0005270605	S	1486	CAGAGCCGAAGACATTTGTCAGCCAAGGAGAGAAGGTAAAGGTAAAAAGA					PREDICTED: Rattus norvegicus similar to serologically defined colon cancer antigen 1 isoform a (LOC500664), mRNA.					
Rattus norvegicus	RefSeq	GI_62646540-S	ILMN_67932	RGD1306721	XM_342602.3	XM_342602.3		362288	109469366	XM_342602.3	RGD1306721	XP_342603.3	ILMN_1371361	0002970750	S	4065	CAGGAAGCAGAGCATTGCACAGGTCATCTGGCCGAAGCCCCAGTGAACAC	3	+	170496745-170496790:170496791-170496794	3q43	PREDICTED: Rattus norvegicus similar to helicase-like protein NHL isoform 2 (RGD1306721), mRNA.					
Rattus norvegicus	RefSeq	GI_62642616-S	ILMN_52182	LOC499393	XM_574709.1	XM_574709.1		499393	62642616	XM_574709.1	LOC499393	XP_574709.1	ILMN_1368690	0005910324	S	889	TGTATGCATCAGTGTTGAGGCCCGAGGGTCTGCTGTGCGAGCTGCATGCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499393), mRNA.					
Rattus norvegicus	RefSeq	GI_18034792-S	ILMN_264715	GABRG1	NM_080586.1	NM_080586.1		140674	18034792	NM_080586.1	Gabrg1	NP_542153.1	ILMN_1372358	0000130138	S	1226	CGGTATCCCCAGGTCTCCATGCTGGATCTACTCTGATTCCCATGAACAAC	14	+	39935801-39935802:39950882-39950929	14p11	Rattus norvegicus gamma-aminobutyric acid (GABA) A receptor, gamma 1 (Gabrg1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666415-S	ILMN_51390	LOC302497	XM_213187.3	XM_213187.3		302497	62666415	XM_213187.3	LOC302497	XP_213187.1	ILMN_1371194	0006020064	S	649	GGCAAGCCCCAGCGTCTGTATTAGGACGCATTTGAGTTAATTTTATACCC				Xq11	PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (LOC302497), mRNA.					
Rattus norvegicus	RefSeq	GI_6981151-S	ILMN_302839	LGALS4	NM_012975.1	NM_012975.1		25474	6981151	NM_012975.1	Lgals4	NP_037107.1	ILMN_1364084	0004810609	S	784	GGCTCCGAAGAGAGGAAGATACCCTACAACCCGTTTGGCGCTGGGCAGTT	1	+	83950268-83950317	1q21	Rattus norvegicus lectin, galactose binding, soluble 4 (Lgals4), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	L36LBI; L-36	L36LBI; L-36
Rattus norvegicus	RefSeq	GI_62645590-S	ILMN_66215	RGD1563127_PREDICTED	XM_347035.3	XM_347035.3		362194	109468661	XM_347035.3	RGD1563127_predicted	XP_347036.3	ILMN_1348819	0001570673	S	2667	CACAGACCCAGAGCTGGTGTTCCTTTGCCGCCATGTCTATGACTTCCGCC	3	+	105435514-105435563	3q35	PREDICTED: Rattus norvegicus similar to mKIAA0945 protein (predicted) (RGD1563127_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659660-S	ILMN_294596	RGD1566124_PREDICTED	XR_008854.1	XR_008854.1		501861	109498874	XR_008854.1	RGD1566124_predicted		ILMN_1354248	0001230537	S	2217	GGGGGACAACTTAGGGTTTGCCGAGGAAGAGGAGCGTGAAATAGGAGTCG				13q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32940 isoform 1 (predicted) (RGD1566124_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648405-S	ILMN_67061	LOC362442	XM_342764.2	XM_342764.2		362442	62648405	XM_342764.2	LOC362442	XP_342765.2	ILMN_1374333	0000360440	S	4139	GAGCTGTTGCCTTGCTGACCGATTAAGAGTGTGGAAGCTCTCCTCGGGTG				4q42	PREDICTED: Rattus norvegicus similar to ovostatin-2 (LOC362442), mRNA.					
Rattus norvegicus	RefSeq	GI_62652072-S	ILMN_50712	LOC500829	XM_576219.1	XM_576219.1		500829	62652072	XM_576219.1	LOC500829	XP_576219.1	ILMN_1357973	0000510563	S	505	GTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC500829), mRNA.					
Rattus norvegicus	RefSeq	GI_62659717-S	ILMN_290113	LOC498277	XR_007542.1	XR_007542.1		498277	109498557	XR_007542.1	LOC498277		ILMN_1370638	0000940484	S	407	CCTCGGGGAGGACTGGAGGAATTCCCTGTCAGTTGGAAAGTACAAGGCTC					PREDICTED: Rattus norvegicus similar to Low affinity immunoglobulin gamma Fc region receptor III precursor (IgG Fc receptor III) (Fc-gamma RIII) (FcRIII) (LOC498277), mRNA.					
Rattus norvegicus	RefSeq	GI_62543510-S	ILMN_285537	RAB30	NM_001015012.1	NM_001015012.1		308821	62543510	NM_001015012.1	Rab30	NP_001015012.1	ILMN_1361194	0007100053	S	946	GGCGCATGAGGGGCTGTTCTCCAGGCTTCAGTGGTAATCTGGTGCCCATG	1	+	149669859-149669908	1q32	Rattus norvegicus RAB30, member RAS oncogene family (Rab30), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Rsb30; MGC108822	Rsb30; MGC108822
Rattus norvegicus	RefSeq	GI_47578004-S	ILMN_282350	OLR1079	NM_001000711.1	NM_001000711.1		404960	47578004	NM_001000711.1	Olr1079	NP_001000711.1	ILMN_1359386	0003440427	S	552	GCTGTCCCAACTCACATGTTCAGACAACTTTCCAAGTCACCTCACAATGC	7	-	12128077-12128126	7q11	Rattus norvegicus olfactory receptor 1079 (Olr1079), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642365-S	ILMN_282599	LOC309433	XM_001057433.1	XM_001057433.1		309433	109463923	XM_001057433.1	LOC309433	XP_001057433.1	ILMN_1366874	0002470091	S	3270	TGCCCCCTGAGAAGACACAGAAAGAGCTGCCCCCAGAGCATCAGTGCCTG				1q54	PREDICTED: Rattus norvegicus similar to S. cerevisiae SEC31-like 2 isoform a (LOC309433), mRNA.					
Rattus norvegicus	RefSeq	GI_56961635-S	ILMN_271252	RGS19	NM_021661.2	NM_021661.2		59293	56961635	NM_021661.2	Rgs19	NP_067693.1	ILMN_1361984	0006980446	S	935	GAGGCCTAGGTCATTTGTCACACAGATGTTCTCCCATGGGCAGCCTAGGG	3	-	170840213-170840254:170840255-170840262	3q43	Rattus norvegicus regulator of G-protein signaling 19 (Rgs19), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IDA]	Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Camki; MGC108699; Gaip	Camki; MGC108699; Gaip
Rattus norvegicus	RefSeq	GI_62643017-S	ILMN_294496	RGD1310081_PREDICTED	XM_001081956.1	XM_001081956.1		310137	109464476	XM_001081956.1	RGD1310081_predicted	XP_001081956.1	ILMN_1373205	0005570497	S	5693	CAGGAGGCAGACATATTTCCGGATCAAGGCATCTCCGTAAGGGGGAACCC	2	+	57874068-57874117	2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13231 (predicted) (RGD1310081_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576178-S	ILMN_286820	OLR1353	NM_001000750.1	NM_001000750.1		405020	47576178	NM_001000750.1	Olr1353	NP_001000750.1	ILMN_1374473	0001980092	S	821	CCATGGAGCAGGGCAAAGTGGTTTCCATCTTCTACACCCTGGTCATTCCC	9	+	91841027-91841076	9q36	Rattus norvegicus olfactory receptor 1353 (Olr1353), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1353	Olr1353
Rattus norvegicus	RefSeq	GI_62647932	ILMN_275307	CAMK1	NM_134468.1	NM_134468.1		171503	19745199	NM_134468.1	Camk1	NP_604463.1	ILMN_1649942	0004200398	S	927	CTTGCAGCACCCCTGGATTGCAGGAGACACAGCTCTGGATAAGAATATCC				4q42	Rattus norvegicus calcium/calmodulin-dependent protein kinase I (Camk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [evidence TAS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Camki; Gaip	Camki; Gaip
Rattus norvegicus	RefSeq	GI_27709485-S	ILMN_267518	CHCHD3_PREDICTED	XM_001066573.1	XM_001066573.1		296966	109473320	XM_001066573.1	Chchd3_predicted	XP_001066573.1	ILMN_2040058	0001990136	S	1175	AGGCTCCAGCATTTAGTGACTTCACCCTGAGAAAGCTGGGAGGAGGGACA				4q22	PREDICTED: Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain containing 3 (predicted) (Chchd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646992-S	ILMN_267518	CHCHD3_PREDICTED	XM_001066573.1	XM_001066573.1		296966	109473320	XM_001066573.1	Chchd3_predicted	XP_001066573.1	ILMN_1374462	0000770440	S	1241	TAGAGACAGCAAGAAAGCACTGGGCTAGGGCAGCAGTATCGGGTGGCCTG				4q22	PREDICTED: Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain containing 3 (predicted) (Chchd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393465-S	ILMN_264365	GPAM	NM_017274.1	NM_017274.1		29653	8393465	NM_017274.1	Gpam	NP_058970.1	ILMN_1363492	0001740609	S	2553	GCGAGCGTCTGTCTTAGAACTGAGCACCACTTTCCTACCTCAGGGCAGCC	1	-	261370307-261370356	1q55	Rattus norvegicus glycerol-3-phosphate acyltransferase, mitochondrial (Gpam), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]	Catalysis of the reaction: acyl-CoA + sn-glycerol 3-phosphate = CoA + 1-acyl-sn-glycerol 3-phosphate [goid 4366] [evidence IDA]; Catalysis of the reaction: acyl-CoA + sn-glycerol 3-phosphate = CoA + 1-acyl-sn-glycerol 3-phosphate [goid 4366] [evidence ISS]; Catalysis of the reaction: acyl-CoA + sn-glycerol 3-phosphate = CoA + 1-acyl-sn-glycerol 3-phosphate [goid 4366] [evidence IEA]; Catalysis of the reaction: acyl-CoA + sn-glycerol 3-phosphate = CoA + 1-acyl-sn-glycerol 3-phosphate [goid 4366] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658626-S	ILMN_274200	LOC687533	XM_001078970.1	XM_001078970.1		687533	109516001	XM_001078970.1	LOC687533	XP_001078970.1	ILMN_1348789	0002190121	S	597	CGGCAGAATTTTTCTGCAAACAGCAGAAGGCATGGAGAAGTGGCAGTCAA					PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor alpha (LOC687533), mRNA.					
Rattus norvegicus	RefSeq	GI_62645864-S	ILMN_56390	TMC2_PREDICTED	XM_230602.3	XM_230602.3		296153	62645864	XM_230602.3	Tmc2_predicted	XP_230602.3	ILMN_1359170	0002060114	S	2071	GGACCTCACACGCTAGTAGTTTCCTTTGCATCCAGACTTGGGAAGGCAGG				3q36	PREDICTED: Rattus norvegicus transmembrane channel-like gene family 2 (predicted) (Tmc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645664-S	ILMN_284732	RGD1306924_PREDICTED	XM_001076537.1	XM_001076537.1		362203	109470508	XM_001076537.1	RGD1306924_predicted	XP_001076537.1	ILMN_1371136	0000450400	S	1909	GGCCCAGTCCTTTATTTTGCTGAAGCCTGTAAGTAGGTGTGATTGTTTGC					PREDICTED: Rattus norvegicus similar to Gamma-tubulin complex component 4 (GCP-4) (predicted) (RGD1306924_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394528-S	ILMN_293317	VDR	NM_017058.1	NM_017058.1		24873	8394528	NM_017058.1	Vdr	NP_058754.1	ILMN_1356241	0004810050	S	1962	GATGACCAAATACACTACCACACGAACCAAGGAGCACTCACCCAGCCCTG	7	-	136567627-136567676	7q36	Rattus norvegicus vitamin D (1,25- dihydroxyvitamin D3) receptor (Vdr), mRNA.	A chromosome found in the nucleus of a eukaryotic cell [goid 228] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence TAS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; Any process induced by hormones that directly activates any of the steps required for cell death by apoptosis [goid 8628] [evidence IDA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence IEA]; Any process by which nutrients are taken up from the contents of the intestine [goid 50892] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence TAS]; Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence IMP]; Interacting selectively with vitamin D, a fat soluble vitamin that contributes to the maintenance of normal levels of calcium and phosphorus in the human bloodstream. Vitamin D is also known as calciferol and five different forms are known, including ergocalciferol and cholecalciferol [goid 5499] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Combining with vitamin D3, cholecalciferol, to initiate a change in cell activity [goid 8434] [evidence TAS]; Combining with vitamin D3, cholecalciferol, to initiate a change in cell activity [goid 8434] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638324-S	ILMN_66572	LOC498984	XM_574274.1	XM_574274.1		498984	62638324	XM_574274.1	LOC498984	XP_574274.1	ILMN_1363960	0004670040	S	717	CTCTTTTCTAAGCTAAATAAAATCACAGGGGAGGGCCCAGGAGCGGCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00126 (LOC498984), mRNA.					
Rattus norvegicus	RefSeq	GI_62661926	ILMN_68921	LOC364385	XM_344408.2	XM_344408.2		364385	62661926	XM_344408.2	LOC364385	XP_344409.2	ILMN_1650713	0003850068	S	977	CCAGAGCTACAGTGTTCAGGAAAGATTTAGATGAGAGAAGGCGGCCCGAG				15p13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S17 (LOC364385), mRNA.					
Rattus norvegicus	RefSeq	GI_62641884-S	ILMN_293704	MS4A8B_PREDICTED	XM_001075127.1	XM_001075127.1		361733	109463573	XM_001075127.1	Ms4a8b_predicted	XP_001075127.1	ILMN_1363103	0002360440	S	1124	GCCTTGGTGTACAGACATTTATGTGACCCCTGCCTACAGGAGCTTTGGGG				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 8B (predicted) (Ms4a8b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645866-S	ILMN_272307	NOL5A	NM_001025732.1	NM_001025732.1		362214	71143105	NM_001025732.1	Nol5a	NP_001020903.1	ILMN_1355261	0003130154	S	935	CCCCAGCCTGTCAGCCTTAATTGGGGAAGCGGTAGGTGCACGTCTCATTG	3	+	117890103-117890133:117890304-117890322	3q36	Rattus norvegicus nucleolar protein 5A (Nol5a), mRNA.				MGC116301	MGC116301
Rattus norvegicus	RefSeq	GI_47577136-S	ILMN_286975	OLR331	NM_001000760.1	NM_001000760.1		405033	47577136	NM_001000760.1	Olr331	NP_001000760.1	ILMN_1365115	0003850050	S	333	GGGGCTGACTGAATCTTGCCTCATGACAGCCATGGCCTATGACAGGTATG	1	-	215219970-215220019	1q43	Rattus norvegicus olfactory receptor 331 (Olr331), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr331	Olr331
Rattus norvegicus	RefSeq	GI_62659034-S	ILMN_262872	RGD1562826_PREDICTED	XM_001080325.1	XM_001080325.1		360822	109497480	XM_001080325.1	RGD1562826_predicted	XP_001080325.1	ILMN_1368985	0006110112	S	835	CTTCGCTACGACAACTACAAGAAACAAGCCAGCGGCGACTCCTGTGGGGC				12q16	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC75937 (predicted) (RGD1562826_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577530-S	ILMN_268942	OLR674	NM_001000352.1	NM_001000352.1		295881	47577530	NM_001000352.1	Olr674	NP_001000352.1	ILMN_1363512	0001780309	S	674	GAGCCCATAGCTCTGAAGGTCGACGTAAAGCTCTCTCCACCTGTGGATCG	3	-	73318565-73318614	3q24	Rattus norvegicus olfactory receptor 674 (Olr674), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr674	Olr674
Rattus norvegicus	RefSeq	GI_62648390-I	ILMN_66321	GRCC3F_PREDICTED	XM_578393.1	XM_578393.1		362434	62648390	XM_578393.1	Grcc3f_predicted	XP_578393.1	ILMN_1375375	0003120180	S	942	GGTAGGAGGACCTTTGCTGCGTCCTCATCTGTGTACTGGACATCTAAGAC				4q42	PREDICTED: Rattus norvegicus gene rich cluster, C3f gene (predicted) (Grcc3f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648390-S	ILMN_66321	GRCC3F_PREDICTED	XM_578393.1	XM_578393.1		362434	62648390	XM_578393.1	Grcc3f_predicted	XP_578393.1	ILMN_2040136	0004590300	I	838	ACCGTGCCCTCGCGACCTATGTCTATCTGTGGCTCGAGAGAGTTCGACTC				4q42	PREDICTED: Rattus norvegicus gene rich cluster, C3f gene (predicted) (Grcc3f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948437-S	ILMN_276023	PYROXD1	NM_001004234.1	NM_001004234.1		297708	51948437	NM_001004234.1	Pyroxd1	NP_001004234.1	ILMN_1358238	0000050600	S	1355	GCACCAGGGGACAGGAGTACATCAAAGTCGTCATGCACAACGGACGCATG	4	+	179926930-179926979	4q44	Rattus norvegicus pyridine nucleotide-disulphide oxidoreductase domain 1 (Pyroxd1), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40018617-S	ILMN_270649	CBX7	NM_199117.1	NM_199117.1		362962	40018617	NM_199117.1	Cbx7	NP_954548.1	ILMN_1367212	0003710025	S	3010	CCCTGGGGGGTATGTGCTGGGAAGGGTCAGCAAGTGTAGACCGCAGTTTT	7	-	118148528-118148577	7q34	Rattus norvegicus chromobox homolog 7 (Cbx7), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62718299-S	ILMN_52789	LOC367513	XM_346184.2	XM_346184.2		367513	62718299	XM_346184.2	LOC367513	XP_346185.1	ILMN_1372567	0000060025	S	786	TTTTAGGGTGTTGGCCCACTACTAATTGATGTAGGCCCCATGCATTGGGA					PREDICTED: Rattus norvegicus hypothetical LOC367513 (LOC367513), mRNA.					
Rattus norvegicus	RefSeq	GI_16758573-A	ILMN_288594	CNTN5	NM_053746.1	NM_053746.1		114589	16758573	NM_053746.1	Cntn5	NP_446198.1	ILMN_1376867	0003610280	S	2223	GGCTGTGGACCTAAACCCCTGGGTAGAATATGAATTCCGAGTGGTGGCCA				8q11	Rattus norvegicus contactin 5 (Cntn5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence NAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Nb-2	Nb-2
Rattus norvegicus	RefSeq	GI_62666750-S	ILMN_70158	LOC302612	XM_217607.3	XM_217607.3		302612	62666750	XM_217607.3	LOC302612	XP_217607.3	ILMN_1349294	0006660110	S	1830	AGATTCTGATATCCAGGAAGTGCTGCCAGTCCCAAATGCTTGGGCCAGCC				Xq21	PREDICTED: Rattus norvegicus similar to DNA segment, Chr X, Brigham & Womens Genetics 1396 expressed, isoform a (LOC302612), mRNA.					
Rattus norvegicus	RefSeq	GI_62718724-S	ILMN_56397	LOC503403	XM_578943.1	XM_578943.1		503403	62718724	XM_578943.1	LOC503403	XP_578943.1	ILMN_1353615	0006770301	S	481	TCTGCGGACCGTTTGGCTTCATGGCGACAGCCCTCACGATACGTTCTGGT					PREDICTED: Rattus norvegicus similar to PH domain-containing protein (LOC503403), mRNA.					
Rattus norvegicus	RefSeq	GI_62718021-S	ILMN_266805	CRB3	NM_001025661.1	NM_001025661.1		301112	71043837	NM_001025661.1	Crb3	NP_001020832.1	ILMN_1374618	0004540095	S	975	GGGGAGAGAGTTCTTCAGAGACCTTGACTTTGAGGGCAAGCGAGGATGGG	Un|NW_047865.1	-	1887-1936		Rattus norvegicus crumbs homolog 3 (Drosophila) (Crb3), mRNA.				MGC114421	MGC114421
Rattus norvegicus	RefSeq	GI_57528204-S	ILMN_291505	RGD1311899	NM_001009630.1	NM_001009630.1		288704	57528204	NM_001009630.1	RGD1311899	NP_001009630.1	ILMN_1372345	0001940333	S	1139	CAGTTGTCTTCGAGAATGATGGGGAGGGGTCTTCAAGCTACTGAGGCCCC	12	-	42945911-42945960	12q16	Rattus norvegicus similar to RIKEN cDNA 2210016L21 gene (RGD1311899), mRNA.				MGC105760	MGC105760
Rattus norvegicus	RefSeq	GI_62642760-S	ILMN_59874	LOC502498	XM_577979.1	XM_577979.1		502498	62642760	XM_577979.1	LOC502498	XP_577979.1	ILMN_1356315	0004850707	S	406	GTGAGATGGAAACTGATGAATGTGGATCCTGCCATGCCTATGGGATGCCC					PREDICTED: Rattus norvegicus similar to secretory protein Crb1s (LOC502498), mRNA.					
Rattus norvegicus	RefSeq	GI_62655064-S	ILMN_54019	LOC501143	XM_576567.1	XM_576567.1		501143	62655064	XM_576567.1	LOC501143	XP_576567.1	ILMN_1373421	0004850551	S	942	TCCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCG				9q31	PREDICTED: Rattus norvegicus similar to boule (LOC501143), mRNA.					
Rattus norvegicus	RefSeq	GI_31342537-S	ILMN_287789	ITPKC	NM_178094.2	NM_178094.2		308451	31342537	NM_178094.2	Itpkc	NP_835195.1	ILMN_1370633	0000580129	S	3179	CACAAGTGGGTGGGGCTGTTGGCCCTAACCGTGGACTACCTGGTTCTAAC	1	-	82285156-82285205	1q21	Rattus norvegicus inositol 1,4,5-trisphosphate 3-kinase C (Itpkc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence ISS]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656914-S	ILMN_54647	MRPL45_PREDICTED	XM_213446.4	XM_213446.4		287656	109488896	XM_213446.4	Mrpl45_predicted	XP_213446.2	ILMN_1358544	0004730037	S	1339	CTGAGGGGAAATGAGAAGCATCAGGAGGGAGAGCAGATGTGGCACTGGGC	10	+	86057498-86057547	10q31	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L45 (predicted) (Mrpl45_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662835-S	ILMN_284174	LOC684666	XM_001071515.1	XM_001071515.1		684666	109504382	XM_001071515.1	LOC684666	XP_001071515.1	ILMN_1374526	0004730017	S	2782	CACCACACTGGGCCTCCAGTCAGGAACCTGGAAAGTCTGTATGAGACTGG					PREDICTED: Rattus norvegicus similar to DDHD domain containing 2 (LOC684666), mRNA.		The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate [goid 4629] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647576-S	ILMN_50182	LOC502827	XM_578327.1	XM_578327.1		502827	62647576	XM_578327.1	LOC502827	XP_578327.1	ILMN_1354449	0006650050	S	102	GGGGACATTGTGCTGACCCAGTCTTCAGCTTCCTTGGTTGTGTCACTGGC					PREDICTED: Rattus norvegicus similar to Ig variable region, light chain (LOC502827), mRNA.					
Rattus norvegicus	RefSeq	GI_62651491-S	ILMN_66782	LOC503069	XM_578589.1	XM_578589.1		503069	62651491	XM_578589.1	LOC503069	XP_578589.1	ILMN_1359690	0005910692	S	116	CACCTGCACTCTCTCCGGGTTCTCACTAGCTGGATATGATTTGCAGTGGG					PREDICTED: Rattus norvegicus similar to Igh-1a_predicted protein (LOC503069), mRNA.					
Rattus norvegicus	RefSeq	GI_58865899-A	ILMN_280872	CD97	NM_001012164.1	NM_001012164.1		361383	58865899	NM_001012164.1	Cd97	NP_001012164.1	ILMN_1376763	0004850064	S	2704	GAGAAACAAAGCCAGACAGCCCAGACCTGCAGCCCACTGCCTGGTACATG	19	+	26108683-26108732	19q11	Rattus norvegicus CD97 molecule (Cd97), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658334-S	ILMN_65710	APRIN_PREDICTED	XM_221833.4	XM_221833.4		304218	109494991	XM_221833.4	Aprin_predicted	XP_221833.4	ILMN_1367145	0006940204	S	6764	GCTGTATAGCTCATTGTAACAGACGCCCTGGCGGATCTGATGACTCCCGG	12	-	4038792-4038841	12p12	PREDICTED: Rattus norvegicus androgen-induced proliferation inhibitor (predicted), transcript variant 2 (Aprin_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.24570	ILMN_299756	TMEM98	NM_001007672.1	NM_001007672.1		303356	56090464	NM_001007672.1	Tmem98	NP_001007673.1	ILMN_1530350	0002260079	S	1314	AATACAGAGTTGATTGTTTCCTTTTTTATCACTATGCCTGCAATTTTACT	10	+	69039150-69039199	10q26	Rattus norvegicus transmembrane protein 98 (Tmem98), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93733	MGC93733
Rattus norvegicus	RefSeq	GI_56090464-S	ILMN_299756	TMEM98	NM_001007672.1	NM_001007672.1		303356	56090464	NM_001007672.1	Tmem98	NP_001007673.1	ILMN_1354646	0006860739	S	986	CTACCGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTTAGTTCA	10	+	69038822-69038871	10q26	Rattus norvegicus transmembrane protein 98 (Tmem98), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93733	MGC93733
Rattus norvegicus	RefSeq	GI_47576754-S	ILMN_267248	OLR178	NM_001000179.1	NM_001000179.1		293325	47576754	NM_001000179.1	Olr178	NP_001000179.1	ILMN_1372189	0002940059	S	859	GCCCTGAATCCTGTCATCTACGGGGTAAGGACTAAGCAGATTCGGGAGCA	1	+	162682056-162682105	1q33	Rattus norvegicus olfactory receptor 178 (Olr178), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162776675-162777613_ORF; Olr178	ratchr1-162776675-162777613_ORF; Olr178
Rattus norvegicus	RefSeq	GI_62653620-S	ILMN_296889	LOC684289	XM_001069743.1	XM_001069743.1		684289	109484654	XM_001069743.1	LOC684289	XP_001069743.1	ILMN_1373088	0004760398	S	1284	CCCTCGGGAAATTGACCAGGTGGCAGGAGACAGTGGTACAGCAATTGTCA					PREDICTED: Rattus norvegicus similar to Protein FAM55D precursor (LOC684289), mRNA.					
Rattus norvegicus	RefSeq	GI_18034778-S	ILMN_67824	NPLOC4	NM_080577.2	NM_080577.2		140639	75832140	NM_080577.2	Nploc4	NP_542144.1	ILMN_1370237	0000450520	S	1880	CACGCGCTGCTACCTCTGCCATGTGGGCTTGTCAGCACTGCACCTTCATG	10	-	109810532-109810581	10q32.3	Rattus norvegicus nuclear protein localization 4 homolog (S. cerevisiae) (Nploc4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IDA]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Npl4; MGC124575	Npl4; MGC124575
Rattus norvegicus	RefSeq	GI_62653787-S	ILMN_269274	RGD1563468_PREDICTED	XM_001073992.1	XM_001073992.1		501010	109484816	XM_001073992.1	RGD1563468_predicted	XP_001073992.1	ILMN_1351598	0005570368	S	1124	GTCTTCCTAGACGGACACACCAGCGACCCAGACGATGACATGGAAGTGAT				8q24	PREDICTED: Rattus norvegicus similar to sperm equatorial segment protein 1 (predicted) (RGD1563468_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978578-S	ILMN_273153	CACNA1A	NM_012918.1	NM_012918.1		25398	6978578	NM_012918.1	Cacna1a	NP_037050.1	ILMN_1366456	0002060168	S	6271	TCACTAGAGCGGGTACCACCTGAGGAGAACCAAAGGTACCACCAACGCCG	19	-	25189718-25189722:25191616-25191660	19q11	Rattus norvegicus calcium channel, voltage-dependent, P/Q type, alpha 1A subunit (Cacna1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence TAS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine [goid 96] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The regulated release of gamm-aminobutyric acid by a cell or group of cells. The gamma-aminobutyric acid is the principal inhibitory neurotransmitter in the brain but is also found in several extraneural tissues [goid 14051] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of acetylcholine [goid 14056] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis [goid 17158] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; The process whereby neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21522] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellum to attain its fully functional state. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21590] [evidence ISS]; The process whose specific outcome is the progression of the cerebellar molecular layer nerve over time, from its formation to the mature structure. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells [goid 21679] [evidence ISS]; The process whose specific outcome is the progression of the cerebellar Purkinje cell layer over time, from its formation to the mature structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells [goid 21680] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence ISS]; The process whose specific outcome is the progression of the vestibular nucleus over time, from its formation to the mature structure [goid 21750] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system [goid 21953] [evidence ISS]; The regulation of the levels, transport, and metabolism of chloride ions within a cell or between a cell and its external environment [goid 30644] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones [goid 32353] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; The chemical reactions and pathways involving neurotransmitters, any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42133] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; The release of a neurotransmitter into the synaptic cleft, where the release step is dependent on the presence of calcium ions (Ca2+). The neurotransmitter is contained within a membrane-bounded vesicle, and is released by fusion of the vesicle with the presynaptic plasma membrane of a nerve cell [goid 48791] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; Involuntary movement caused by the application of a stimulus to an organism and a subsequent movement. The signal processing of this movement takes place in the spinal cord [goid 50883] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 51932] [evidence ISS]; Any process involved in the generation of rhythmic, synchronous synaptic inputs in a neural circuit [goid 60024] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence TAS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a high voltage-gated channel [goid 8331] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a high voltage-gated channel [goid 8331] [evidence ISS]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [pmid 15980432] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [pmid 15980432] [evidence IDA]	rbA-1; Cav2.1; BccA1	rbA-1; Cav2.1; BccA1
Rattus norvegicus	RefSeq	GI_57012373-S	ILMN_290859	KRT26	NM_001008823.1	NM_001008823.1		407758	57012373	NM_001008823.1	Krt26	NP_001008823.1	ILMN_1354040	0006020093	S	945	GGCCGAGACCGAAGGGAATTACTATGCGCAACTCCAGCAGATCCAGGAGC	10	-	88236417-88236466	10q32.1	Rattus norvegicus keratin 26 (Krt26), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644870-S	ILMN_296361	IER5L	XM_001079588.1	XM_001079588.1		499772	109469704	XM_001079588.1	Ier5l	XP_001079588.1	ILMN_1372814	0004060458	S	2380	TTGTTGTGAGAAGGTGAGGTTTGCCTAGTGCCCCCCTCTGGGTCTCTGCC				3p12	PREDICTED: Rattus norvegicus immediate early response 5-like (Ier5l), mRNA.					
Rattus norvegicus	RefSeq	GI_62664218-S	ILMN_267759	LOC686063	XR_006360.1	XR_006360.1		686063	109506400	XR_006360.1	LOC686063		ILMN_1362408	0000840133	S	196	AAGCTAGAGGCTAAGTGTGTATGGGGACACGGAAAGGAGCACCGCAGAGC	18	-	23904624-23904673	18p12	PREDICTED: Rattus norvegicus similar to cytoplasmic beta-actin (LOC686063), mRNA.					
Rattus norvegicus	RefSeq	GI_62717718-S	ILMN_295552	LOC367352	XR_007715.1	XR_007715.1		367352	109521157	XR_007715.1	LOC367352		ILMN_1350023	0005860471	S	593	AAGGTCAATGTGTGTAGTTCACCAGAAGCGACCTGTCCAAAAAGATCGGC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367352), mRNA.					
Rattus norvegicus	RefSeq	GI_62642996-S	ILMN_49255	LOC502508	XM_577990.1	XM_577990.1		502508	62642996	XM_577990.1	LOC502508	XP_577990.1	ILMN_1367412	0004610398	S	196	CAGGCTGTGACTTTGCAGCTCCTTTGTTTTGCTTTGTGCCTGTGCGGAAC					PREDICTED: Rattus norvegicus similar to ENSANGP00000010498 (LOC502508), mRNA.					
Rattus norvegicus	RefSeq	GI_56090440-S	ILMN_288600	DDX5	NM_001007613.1	NM_001007613.1		287765	56090440	NM_001007613.1	Ddx5	NP_001007614.1	ILMN_1359840	0006550497	S	2019	GCTACCGCAGCTGCTGCGCCTATGATTGGCTATCCAATGCCAACAGGGTA	10	-	96132201-96132250	10q32.1	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), mRNA.		Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence IEA]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652685-S	ILMN_267545	LOC686765	XM_001075602.1	XM_001075602.1		686765	109482515	XM_001075602.1	LOC686765	XP_001075602.1	ILMN_1351667	0003850369	S	453	GATGCGCTCCTTGTTTGGGGACTACAGGGCTCAGATGGATGCAGAGTGGC					PREDICTED: Rattus norvegicus similar to CG14286-PA (LOC686765), mRNA.					
Rattus norvegicus	RefSeq	GI_62666576-S	ILMN_266378	LOC691903	XM_001080044.1	XM_001080044.1		691903	109510466	XM_001080044.1	LOC691903	XP_001080044.1	ILMN_1355567	0002230121	S	577	GGTATTCAGGTAAATGCTTGGAGCCACCGACTGCGAGAGAGGAAGACTCG	X	-	26091282-26091331	Xq13	PREDICTED: Rattus norvegicus similar to synovial sarcoma, X member B, breakpoint 10 (LOC691903), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393201-S	ILMN_291353	CSN2	NM_017120.1	NM_017120.1		29173	8393201	NM_017120.1	Csn2	NP_058816.1	ILMN_1350760	0001050253	S	596	CCTCAGTCCAAAAGTCAGTACCTTGTGCAGCAACTAGCCCCCCTCTTCCA	14	+	21853299-21853348	14p21	Rattus norvegicus casein beta (Csn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Csnb	Csnb
Rattus norvegicus	RefSeq	GI_62657676-S	ILMN_62247	TTC3_PREDICTED	XM_340973.3	XM_340973.3		360702	109492946	XM_340973.3	Ttc3_predicted	XP_340974.1	ILMN_1373619	0000510433	S	1328	TGGCGGTGGCCATCAGAATCAAAAGGTGGCAGATGAGGCTTTGAAGGGGG	11	+	34657850-34657874:34658976-34659000	11q11	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 3 (predicted) (Ttc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660965	ILMN_67092	ACYP2	XM_344275.2	XM_344275.2		364225	62660965	XM_344275.2	Acyp2	XP_344276.2	ILMN_1649899	0004670711	S	438	TGAATCTGAACAAGAGAGGCAACTAGGCAGCAGGAGAATGGGGGTAAACC				14q22	PREDICTED: Rattus norvegicus similar to macrophage migration inhibitory factor (Acyp2), mRNA.			Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate [goid 3998] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639368-S	ILMN_51705	LOC361547	XM_341833.2	XM_341833.2		361547	62639368	XM_341833.2	LOC361547	XP_341834.1	ILMN_1355892	0003360358	S	454	GCCTTCGGGCAGAGAACCAAGAGCTAGACCAGAGCCTGGAGCTGATGGAT					PREDICTED: Rattus norvegicus LOC361547 (predicted) (LOC361547), mRNA.					
Rattus norvegicus	RefSeq	GI_62663363-S	ILMN_292550	RGD1566352_PREDICTED	XR_007663.1	XR_007663.1		291028	109505588	XR_007663.1	RGD1566352_predicted		ILMN_1373011	0006200368	S	37	ACGAACCCAAAGGGAAGGAGGAGAGGCACTTGGTGCATGTTCTGTAGGCC				17p13	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1566352_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577460-S	ILMN_280737	OLR471	NM_001001125.1	NM_001001125.1		406046	47577460	NM_001001125.1	Olr471	NP_001001125.1	ILMN_1349477	0001230070	S	464	GTGGCCTGATGGAAACCATGTGGACATATCGCTTGACCTTCTGTGGCTCC	3	+	69197320-69197369	3q24	Rattus norvegicus olfactory receptor 471 (Olr471), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr471	Olr471
Rattus norvegicus	RefSeq	GI_62650010-S	ILMN_264899	RGD1305350_PREDICTED	XM_001074867.1	XM_001074867.1		313699	109477689	XM_001074867.1	RGD1305350_predicted	XP_001074867.1	ILMN_1350908	0006550563	S	2338	GGGGGTCTGTGTTTTTGAACTTTGGGTCCCTGGGAGAGGTGTTTGACTTT				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510039O18 (predicted) (RGD1305350_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643466-S	ILMN_49103	SPG20	XM_215564.4	XM_215564.4		295053	109464888	XM_215564.4	Spg20	XP_215564.4	ILMN_1354150	0002680056	S	2289	GAGGGAAAGTCAGGGAGGAGCAACGAGCACAGAAGGGACAAGAGATGTGG	2	+	144360533-144360582	2q26	PREDICTED: Rattus norvegicus spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) (Spg20), mRNA.					
Rattus norvegicus	RefSeq	GI_13786193-S	ILMN_296241	PEX3	NM_031350.1	NM_031350.1		83519	13786193	NM_031350.1	Pex3	NP_112640.1	ILMN_1353818	0000770242	S	1601	GTAAGCAAGAGCAAGCCAGATCCTCTTCAGTCGCCCTTAGAAGGCACCCG	1	-	8316406-8316455	1p13	Rattus norvegicus peroxisomal biogenesis factor 3 (Pex3), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence IEA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence ISS]; The assembly and arrangement of the membrane of a peroxisome [goid 16557] [evidence IDA]; The targeting of proteins into the peroxisomal membrane. The process is not well understood, but both signals and mechanism differ from those involved in peroxisomal matrix protein import [goid 45046] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6981303-S	ILMN_279185	OMP	NM_012616.1	NM_012616.1		24612	6981303	NM_012616.1	Omp	NP_036748.1	ILMN_1358083	0001450288	S	247	TGCAGTTCGATCACTGGAACGTGGTTCTGGACAAGCCGGGCAAGGTCACC	1	-	155388889-155388938	1q32	Rattus norvegicus olfactory marker protein (Omp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence NAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence NAS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence NAS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62655467-S	ILMN_269579	RGD1561887_PREDICTED	XM_001069874.1	XM_001069874.1		301628	109487559	XM_001069874.1	RGD1561887_predicted	XP_001069874.1	ILMN_1355247	0002470193	S	12	GATTGTTGACTCTGGTGCTGCCAAGGCTGTGAACAAAGTCATCCCAGAGC				9q36	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1561887_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789318-S	ILMN_290443	CBLB	NM_133601.1	NM_133601.1		171136	29789318	NM_133601.1	Cblb	NP_598285.1	ILMN_1351226	0003440347	S	2938	GAATGCAGGAGCCATGGTGTCTTTTCATGTGGCGTCTCCAGAAGGCAGCC	11	-	49690787-49690836	11q21	Rattus norvegicus Cas-Br-M (murine) ecotropic retroviral transforming sequence b (Cblb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50860] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656245-S	ILMN_56133	LOC497926	XM_573113.1	XM_573113.1		497926	62656245	XM_573113.1	LOC497926	XP_573113.1	ILMN_1351113	0003710253	S	2342	CTGCAGGTTCTGCCAGCCAGTGGACCCTCTCCTGAAGGTGATGTGAAGCT				10q24	PREDICTED: Rattus norvegicus similar to novel protein (LOC497926), mRNA.					
Rattus norvegicus	RefSeq	GI_62659240-S	ILMN_289298	RGD1563709_PREDICTED	XR_007499.1	XR_007499.1		304756	109498553	XR_007499.1	RGD1563709_predicted		ILMN_1350657	0006370324	S	1015	TTCCCAAGGAAGTCAATCCCGCCATTGCCACCATCAAGACCAAGCACACC				13q11	PREDICTED: Rattus norvegicus similar to K-ALPHA-1 protein (predicted) (RGD1563709_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718722-S	ILMN_56297	LOC300793	XM_236355.3	XM_236355.3		300793	62718722	XM_236355.3	LOC300793	XP_236355.3	ILMN_1358275	0004210082	S	698	TAATAGAGAAAGAATGGCGTGGTGGGTAGCTCTAGGGTGGCACCGGGGAG					PREDICTED: Rattus norvegicus similar to AI449441 protein (predicted) (LOC300793), mRNA.					
Rattus norvegicus	RefSeq	GI_62658701-A	ILMN_271850	RABL5	NM_001011902.1	NM_001011902.1		288585	58865381	NM_001011902.1	Rabl5	NP_001011902.1	ILMN_1376488	0000730162	S	544	GTGCACTCAAATCTGGAGGAAGACCCCGAGGAGGTCCGGGTGGAGTTCAT	12	+	20767521-20767570	12q12	Rattus norvegicus RAB, member RAS oncogene family-like 5 (Rabl5), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109244	MGC109244
Rattus norvegicus	RefSeq	GI_62717728-S	ILMN_294306	LOC681189	XR_005993.1	XR_005993.1		681189	109512779	XR_005993.1	LOC681189		ILMN_1358003	0002650372	S	589	CTGTCACCCAGTGAAAGGCCATCATTCTAGATCAACTGCCAACAAATCCC	Un|NW_047829.1	-	1299605-1299654		PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC681189), mRNA.					
Rattus norvegicus	RefSeq	GI_62649770-S	ILMN_69335	SFN_PREDICTED	XM_232745.4	XM_232745.4		313017	109475598	XM_232745.4	Sfn_predicted	XP_232745.4	ILMN_1352207	0003390008	S	1134	TTGGATGGGGTGCAGCCAAGCTGAGGCCACCAGGGCTGGGGAATCTCACT	5	+	151480053-151480102	5q36	PREDICTED: Rattus norvegicus stratifin (predicted) (Sfn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666995-S	ILMN_60202	LOC302447	XM_228611.3	XM_228611.3		302447	62666995	XM_228611.3	LOC302447	XP_228611.3	ILMN_1362733	0003190576	S	2154	CCTTCCTCCACACTCTTCAAAATAGATTATGTCAAGCTGCCATCACTTCC				Xq22	PREDICTED: Rattus norvegicus similar to mKIAA1387 protein (LOC302447), mRNA.					
Rattus norvegicus	RefSeq	GI_34877157	ILMN_294083	RGD1564536_PREDICTED	XR_007706.1	XR_007706.1		367300	109487368	XR_007706.1	RGD1564536_predicted		ILMN_1650119	0000430408	S	498	GAGACCAAGGCCCACTGCACCCTGGCAGAGAAACTAGGTGGCAGTGTCAT				9q33	PREDICTED: Rattus norvegicus similar to Cofilin, non-muscle isoform (Cofilin-1) (predicted) (RGD1564536_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577982-S	ILMN_262661	OLR1096	NM_001000485.1	NM_001000485.1		302027	47577982	NM_001000485.1	Olr1096	NP_001000485.1	ILMN_1375032	0002760671	S	435	GGCCTCTTCCTGGCTAGCAGGTGTGCTCAACGCACTCATCCAGACTTCTA	7	-	16550619-16550668	7q12	Rattus norvegicus olfactory receptor 1096 (Olr1096), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1096	Olr1096
Rattus norvegicus	RefSeq	GI_62651957-S	ILMN_68210	LOC299662	XM_234965.3	XM_234965.3		299662	62651957	XM_234965.3	LOC299662	XP_234965.3	ILMN_1362427	0003390270	S	1646	GCACACCCAAACAGTAAAACAGCCGCCTATCCCTAGTGAAATCCTGGTGC				7q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (LOC299662), mRNA.					
Rattus norvegicus	RefSeq	GI_27715852-S	ILMN_51817	TAL1_PREDICTED	XM_233430.4	XM_233430.4		313507	109475259	XM_233430.4	Tal1_predicted	XP_233430.2	ILMN_2040620	0000870482	S	776	ACCAACAGCCGGGAGCGATGGAGGCAGCAGAATGTGAATGGGGCATTTGC	5	+	135441462-135441511	5q36	PREDICTED: Rattus norvegicus T-cell acute lymphocytic leukemia 1 (predicted) (Tal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507216-S	ILMN_275012	TYMS	NM_019179.1	NM_019179.1		29261	9507216	NM_019179.1	Tyms	NP_062052.1	ILMN_1367858	0002850692	S	1435	GCTATATAGCACGAGCTTCCTTAGCCCGCTACCTCTGAGGTGGTCGGTTT				9q38	Rattus norvegicus thymidylate synthetase (Tyms), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate) [goid 6231] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate) [goid 6231] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]; The chemical reactions and pathways involving dUMP, deoxyuridine (5'-)monophosphate (2'-deoxyuridine 5'-phosphate) [goid 46078] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP [goid 4799] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP [goid 4799] [evidence IEA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP [goid 4799] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IDA]	MGC156654	MGC156654
Rattus norvegicus	RefSeq	GI_51036662-S	ILMN_285721	RGD69425	NM_031001.2	NM_031001.2		79435	51036662	NM_031001.2	RGD69425	NP_112263.1	ILMN_1372374	0006100280	S	1166	AGATCGGCACTATCGGTCCATAAAGTGTGCCTGGCTTTGTTCCCAAATCC	14	-	2470031-2470080	14p22	Rattus norvegicus ubiquitin-conjugating enzyme (RGD69425), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	Ube2d2	Ube2d2
Rattus norvegicus	RefSeq	GI_27705133-S	ILMN_69978	RGD1565460_PREDICTED	XM_228087.2	XM_228087.2		294343	109509338	XM_228087.2	RGD1565460_predicted	XP_228087.1	ILMN_1366560	0002690348	S	1128	CCTTTTAGAGCACATGAAGGACAACCACAAGCCCGGGGAGATGCCCTACG	20	-	13029292-13029341	20p12	PREDICTED: Rattus norvegicus similar to suppressor of hairy wing homolog 2 (predicted) (RGD1565460_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17105353-S	ILMN_301761	NCR1	NM_057199.1	NM_057199.1		117547	17105353	NM_057199.1	Ncr1	NP_476547.1	ILMN_1365141	0000780064	S	955	GAGGGAACTGAAGGCAACTCCTGGGGATATGTGAGCTCCATGTTACCCCC	1	-	68966668-68966684:68966685-68966717	1q12	Rattus norvegicus natural cytotoxicity triggering receptor 1 (Ncr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Nk-p46; KILR-1; Nkp46; Ly94	Nk-p46; KILR-1; Nkp46; Ly94
Rattus norvegicus	RefSeq	GI_62663461-S	ILMN_56339	NRITP	XM_341519.3	XM_341519.3		64559	109504853	XM_341519.3	Nritp	XP_341520.3	ILMN_1369142	0005570348	S	3336	GTTTCCATCCTGTGTTGGGAAAGCAGCCCCCAAAATGTCGTAAGAGCCAG	17	+	37046761-37046810	17p12	PREDICTED: Rattus norvegicus ion transporter protein (Nritp), mRNA.					
Rattus norvegicus	RefSeq	Rn.45804	ILMN_56339	NRITP	XM_341519.3	XM_341519.3		64559	109504853	XM_341519.3	Nritp	XP_341520.3	ILMN_1530318	0002320040	S	5452	AATTATTAGCACCCAAGACAAATAGGGAAAAGGCTTAGATGTTTTTGTGT	17	+	37048908-37048957	17p12	PREDICTED: Rattus norvegicus ion transporter protein (Nritp), mRNA.					
Rattus norvegicus	RefSeq	GI_62638410-S	ILMN_48258	LOC308053	XM_217724.3	XM_217724.3		308053	62638410	XM_217724.3	LOC308053	XP_217724.3	ILMN_1373242	0000110132	S	2784	CGCCGAGGAACCCATATCCGTGAGTCAGATGTTCCAGCCTATCATTCTCC				1p11	PREDICTED: Rattus norvegicus similar to intracellular protein transport like (XM453) (predicted) (LOC308053), mRNA.					
Rattus norvegicus	RefSeq	GI_47576018-S	ILMN_282324	OLR1440	NM_001000017.1	NM_001000017.1		287329	47576018	NM_001000017.1	Olr1440	NP_001000017.1	ILMN_1349588	0006860717	S	804	TGGGAGGGACAAAGTGGTGGCTGTGCTTTACTCTATCATCACCCCTGTTC	10	-	44716708-44716757	10q22	Rattus norvegicus olfactory receptor 1440 (Olr1440), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1440	Olr1440
Rattus norvegicus	RefSeq	GI_40254773-S	ILMN_273663	KCNK1	NM_021688.2	NM_021688.2		59324	40254773	NM_021688.2	Kcnk1	NP_067720.1	ILMN_1356313	0002370400	S	1969	CTTGCGACGGCGTAGGACCAGACAAGTGAGGAAGAGGGTTGGTGAGAAGG	19	+	56255058-56255107	19q12	Rattus norvegicus potassium channel, subfamily K, member 1 (Kcnk1), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Twik	Twik
Rattus norvegicus	RefSeq	GI_62717998-S	ILMN_60069	LOC501274	XM_576689.1	XM_576689.1		501274	62717998	XM_576689.1	LOC501274	XP_576689.1	ILMN_1357011	0005050341	S	659	CCACAAAAGAGTGTTCCTCATCCCAGGATTGTCTAGGCATCTTCAGAAGG					PREDICTED: Rattus norvegicus similar to Integrin alpha-6 precursor (VLA-6) (CD49f) (LOC501274), mRNA.					
Rattus norvegicus	RefSeq	GI_62654330-S	ILMN_51740	SLC26A6_PREDICTED	XM_217275.3	XM_217275.3		301010	62654330	XM_217275.3	Slc26a6_predicted	XP_217275.3	ILMN_1366959	0006840008	S	2490	GTCAGGCTGGCCTTGGCTGGAAAAAGCTGATGTGGGTTTACAGTTTTGGG					PREDICTED: Rattus norvegicus solute carrier family 26, member 6 (predicted) (Slc26a6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424195-S	ILMN_292034	EXPI	NM_133537.1	NM_133537.1		171059	19424195	NM_133537.1	Expi	NP_598221.1	ILMN_1366782	0005720315	S	1	GACAGCCTCAGTCTTGCTTCTGGTGGCTTTGATCGCCGTGGGAATGAACA	10	+	71930940-71930982:71930983-71930989	10q26	Rattus norvegicus extracellular proteinase inhibitor (Expi), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]	WDNM1	WDNM1
Rattus norvegicus	RefSeq	GI_62666793-S	ILMN_278385	RGD1563952_PREDICTED	XM_001071071.1	XM_001071071.1		363463	109511734	XM_001071071.1	RGD1563952_predicted	XP_001071071.1	ILMN_1361168	0000580463	S	3740	AGCTTGATCTGCAACTAGCCGAAAATGCAAATGCTGGTAAACCTAGTCTC				Xq21	PREDICTED: Rattus norvegicus similar to Mospd2 protein (predicted) (RGD1563952_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948459-S	ILMN_275897	RGD1303127	NM_001004244.1	NM_001004244.1		300206	51948459	NM_001004244.1	RGD1303127	NP_001004244.1	ILMN_1366726	0006180091	S	1542	GGGATTTTTTGCGAGGAAGAGCGTGAGGTGCTCCCTGCCTTTGAGATGCA	7	-	137266379-137266428	7q36	Rattus norvegicus similar to hypothetical protein FLJ20436 (RGD1303127), mRNA.				MGC94200	MGC94200
Rattus norvegicus	RefSeq	GI_57012371-S	ILMN_290696	KRT76	NM_001008805.1	NM_001008805.1		407757	57012371	NM_001008805.1	Krt76	NP_001008805.1	ILMN_1362055	0002970672	S	1460	TCAGCAATGTTACCAGCACAAGCAGCAGCGGAGGCTACAGAGGGGCCGGT	7	-	140582468-140582517	7q36	Rattus norvegicus keratin 76 (Krt76), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]	Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62654164-S	ILMN_66423	RGD1561304_PREDICTED	XM_343454.3	XM_343454.3		363120	109483853	XM_343454.3	RGD1561304_predicted	XP_343455.3	ILMN_1373712	0006130609	S	2710	TGCAGAAACTTGACACCCTGCACCAGCAGTGGCGCTGATCCCTATGTCCG	8	-	104174700-104174745:104175229-104175232	8q31	PREDICTED: Rattus norvegicus similar to hypothetical protein D930024E11 (predicted) (RGD1561304_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718297-S	ILMN_269792	LOC501237	XM_580178.1	XM_580178.1		501237	62717852	XM_580178.1	LOC501237	XP_580178.1	ILMN_1370465	0006760070	S	1878	GGACACGTTCCTGAGACGCTGGATGTGAAATGCCGCATACAACACTTGGG	Un|NW_047848.1	-	232934-232983		PREDICTED: Rattus norvegicus hypothetical LOC501237 (LOC501237), mRNA.					
Rattus norvegicus	RefSeq	GI_62666503-S	ILMN_293822	SLC9A7_PREDICTED	XM_001055038.1	XM_001055038.1		317170	109511459	XM_001055038.1	Slc9a7_predicted	XP_001055038.1	ILMN_1362109	0005050402	S	2217	GCTCTGAGGAAGTGCTTGAGCGAGACCTGGGAATGGGAGACCAGAAGGTT				Xq12	PREDICTED: Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 7 (predicted) (Slc9a7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656460-S	ILMN_301654	USP43_PREDICTED	XM_001078963.1	XM_001078963.1		303233	109491038	XM_001078963.1	Usp43_predicted	XP_001078963.1	ILMN_1372293	0002690722	S	1769	CAAAGTCTGGGACTACAACGAGGGCGAGGTGACTCATGTTGGGGTGGGAC				10q24	PREDICTED: Rattus norvegicus ubiquitin specific protease 43 (predicted) (Usp43_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656458-S	ILMN_301654	USP43_PREDICTED	XM_001078963.1	XM_001078963.1		303233	109491038	XM_001078963.1	Usp43_predicted	XP_001078963.1	ILMN_1370707	0000130722	S	5284	AGAGGGACATCCGTTCTGCGCCCAGCTCTCTCCACCTCCCCAGAAAAGCT				10q24	PREDICTED: Rattus norvegicus ubiquitin specific protease 43 (predicted) (Usp43_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46849752-A	ILMN_278236	NG35	NR_002143.1	NR_002143.1		309613	46849752	NR_002143.1	Ng35		ILMN_1376477	0004850309	S	1314	GGCACCTCAAGGAGCAGCATGGCAAAACCACAGCCGAGAACGTGCTGGAA	20	-	4039986-4040035	20p12	Rattus norvegicus Ng35 pseudogene (Ng35) on chromosome 20.					
Rattus norvegicus	RefSeq	GI_61557136-S	ILMN_294533	TRIM69	NM_001013160.1	NM_001013160.1		311373	61557136	NM_001013160.1	Trim69	NP_001013178.1	ILMN_1367721	0006110168	S	1295	GGCTTCTAAGACTAAGGAACCAAACGGATCTAAAGGCCCTGGATCTGCCC	3	+	108963619-108963668	3q35	Rattus norvegicus tripartite motif-containing 69 (Trim69), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108781	MGC108781
Rattus norvegicus	RefSeq	GI_62667215-S	ILMN_290780	RGD1559741_PREDICTED	XM_579010.1	XM_579010.1		503458	62667215	XM_579010.1	RGD1559741_predicted	XP_579010.1	ILMN_1362508	0003440398	S	116	ATAATGATATAGTTGTCAGAAATCCAGAAAACTGTGAATTAGCTGAAAGG	X	+	113944605-113944652:113945008-113945009	Xq33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921511C20 gene (predicted) (RGD1559741_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54019435-S	ILMN_298499	PCDHA6	NM_199506.1	NM_199506.1		393088	54019435	NM_199506.1	Pcdha6	NP_955800.1	ILMN_1374939	0003940577	S	2368	CCGGGTCTTCCTCCTTGTCCGGTTGTGGGTGAGCATCAGGATTCAAACGA	18	+	29700243-29700292	18p11	Rattus norvegicus protocadherin alpha 6 (Pcdha6), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	rCNRv06	rCNRv06
Rattus norvegicus	RefSeq	GI_62647121-S	ILMN_51435	LOC500099	XM_575450.1	XM_575450.1		500099	62647121	XM_575450.1	LOC500099	XP_575450.1	ILMN_1374153	0003130746	S	129	GACATCTGGTCAAAGGAAAAGAACAGAAAGCCAGAATGCAGTGCACCCCC					PREDICTED: Rattus norvegicus similar to T-cell receptor beta chain precursor V region (CRTB4) - rat  (fragment) (LOC500099), mRNA.					
Rattus norvegicus	RefSeq	GI_62644612-S	ILMN_61867	LOC362068	XM_342369.2	XM_342369.2		362068	62644612	XM_342369.2	LOC362068	XP_342370.2	ILMN_1366956	0005360369	S	11291	ACGAGACTTCAGAATGTCCGGATGGCAAGGAGCAATGGGAATGACCACTG					PREDICTED: Rattus norvegicus similar to very large G protein-coupled receptor 1 (LOC362068), mRNA.					
Rattus norvegicus	RefSeq	GI_62662686-S	ILMN_52484	MTNR1A	XM_341441.3	XM_341441.3		114211	109503402	XM_341441.3	Mtnr1a	XP_341442.1	ILMN_1375088	0005220520	S	763	GCCCCACTCAACTTCATAGGTCTTATTGTGGCCTCAGATCCGGCCGCCAT	16	-	50440163-50440212	16q11	PREDICTED: Rattus norvegicus melatonin receptor 1A (Mtnr1a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melatonin, N-acetyl-5-methoxytryptamine, to initiate a change in cell activity. Melatonin is a neuroendocrine substance that stimulates the aggregation of melanosomes in melanophores, thus lightening the skin [goid 8502] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melatonin, N-acetyl-5-methoxytryptamine, to initiate a change in cell activity. Melatonin is a neuroendocrine substance that stimulates the aggregation of melanosomes in melanophores, thus lightening the skin [goid 8502] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650806-S	ILMN_55460	RGD1565716_PREDICTED	XM_216733.4	XM_216733.4		299129	109478339	XM_216733.4	RGD1565716_predicted	XP_216733.4	ILMN_1361695	0000450725	S	3341	ATCTCCAGAACAACAACCTCACGTCATTCAGTGGCCTCATCTACCTGCCC	6	+	94799313-94799362	6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921529O18 (predicted) (RGD1565716_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21326458-S	ILMN_286981	LRRC21	NM_139331.1	NM_139331.1		246214	21326458	NM_139331.1	Lrrc21	NP_647547.1	ILMN_1357735	0002450136	S	3860	GTCTGGAGGGCTGCCTTCAGGATGTGGGTGATCATTGCCTCTTAATGGCC	16	+	13272315-13272364	16p14	Rattus norvegicus leucine rich repeat containing 21 (Lrrc21), mRNA.				Pal	Pal
Rattus norvegicus	RefSeq	GI_62660049-S	ILMN_284645	LOC690395	XM_001074324.1	XM_001074324.1		690395	109499418	XM_001074324.1	LOC690395	XP_001074324.1	ILMN_1365684	0002680403	S	994	CATCGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTGCAAGAGAGCTGG	14	-	4323900-4323925:4324646-4324669	14p22	PREDICTED: Rattus norvegicus hypothetical protein LOC690395 (LOC690395), mRNA.					
Rattus norvegicus	RefSeq	GI_62639262-S	ILMN_69052	RGD1561117_PREDICTED	XM_577769.2	XM_577769.2		502305	109458297	XM_577769.2	RGD1561117_predicted	XP_577769.2	ILMN_1367482	0005390377	S	371	AAGCCATCATCTTTGCCACCGCGGGCTGCTGTCTGCTGCTGGAGTTCTGG	1	+	78620007-78620056	1q21	PREDICTED: Rattus norvegicus similar to OPA3 protein (predicted) (RGD1561117_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663398-S	ILMN_52316	GFOD1_PREDICTED	XM_225228.4	XM_225228.4		306842	109504806	XM_225228.4	Gfod1_predicted	XP_225228.2	ILMN_1369714	0000540333	S	999	GGCTGCCACCTTCGACGACTGCCTGTATGCTCTTTGCGTGGTAGACACCA	17	+	27329212-27329261	17p12	PREDICTED: Rattus norvegicus glucose-fructose oxidoreductase domain containing 1 (predicted) (Gfod1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641936-S	ILMN_65918	RGD1561881_PREDICTED	XM_219750.4	XM_219750.4		293876	109459953	XM_219750.4	RGD1561881_predicted	XP_219750.4	ILMN_1365222	0001940408	S	981	TGCCTACAGCAACAGGGTGGTGAAACTCATGTCCTACATGGCCTCTAAGG	1	-	222793957-222794006	1q43	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1561881_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424173-S	ILMN_268680	RGD620382	NM_133525.1	NM_133525.1		171047	19424173	NM_133525.1	RGD620382	NP_598209.1	ILMN_1354636	0005080465	S	309	GCAGTAGCTCTTGGGAAGCCAATTCTGTGCCTGTTTCGACCACAGTCTGG	9	-	9865415-9865464	9q12	Rattus norvegicus Nucleoside 2-deoxyribosyltransferase domain containing protein RGD620382 (RGD620382), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]			Rcl; C6orf108	Rcl; C6orf108
Rattus norvegicus	RefSeq	GI_34854609-S	ILMN_284536	NALP12_PREDICTED	XM_001066862.1	XM_001066862.1		292541	109461058	XM_001066862.1	Nalp12_predicted	XP_001066862.1	ILMN_1357127	0001990411	S	3075	GTGGCTTTTCGGAATGGACCTGAACAAAGTGACCCACAGGAGGATGGCGG				1q12	PREDICTED: Rattus norvegicus NACHT, leucine rich repeat and PYD containing 12 (predicted) (Nalp12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654507-S	ILMN_60537	LYZL4_PREDICTED	XM_343507.3	XM_343507.3		363168	109484111	XM_343507.3	Lyzl4_predicted	XP_343508.3	ILMN_1359619	0004610687	S	1553	GGCCGTGTCTTGGGACTGAGGGCGCTTTTCTGTTTGCTGCTTCAATCCAT	8	-	126588303-126588352	8q32	PREDICTED: Rattus norvegicus lysozyme-like 4 (predicted) (Lyzl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078878-S	ILMN_297771	FAM98A	NM_001014073.1	NM_001014073.1		313873	62078878	NM_001014073.1	Fam98a	NP_001014095.1	ILMN_1370968	0004920056	S	2522	TTGCTGCAGAAGACAGAAGCCTGGCTGAGTCACCCTCCACGTCTATACTG	6	+	19801641-19801690	6q12	Rattus norvegicus family with sequence similarity 98, member A (Fam98a), mRNA.				MGC106015	MGC106015
Rattus norvegicus	RefSeq	GI_62648149-S	ILMN_265517	MLF2_PREDICTED	XM_001062959.1	XM_001062959.1		312709	109474219	XM_001062959.1	Mlf2_predicted	XP_001062959.1	ILMN_1350609	0004060433	S	842	ACGTCCTCTGGAATTTCGACGGCATGAGGCGTCTGTGGGTGGGGGACGAA				4q42	PREDICTED: Rattus norvegicus myeloid leukemia factor 2 (predicted) (Mlf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658094-S	ILMN_48127	LOC363784	XM_344021.2	XM_344021.2		363784	62658094	XM_344021.2	LOC363784	XP_344022.2	ILMN_1373223	0003990403	S	998	GAGACTGCTGCCTGCTTCTGCTTATCAATACCAAGGATACAGCGGCCCTG				11q21	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC363784), mRNA.					
Rattus norvegicus	RefSeq	GI_62650777-S	ILMN_54009	LOC362748	XM_343073.2	XM_343073.2		362748	62650777	XM_343073.2	LOC362748	XP_343074.2	ILMN_1373350	0000870692	S	2050	GAACCACCTCATGGAGAAATGGCTGTAGCACAGACTGGTTCTTGGCCTGC				6q24	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 138 (predicted) (LOC362748), mRNA.					
Rattus norvegicus	RefSeq	GI_62652177-S	ILMN_56032	LOC503141	XM_578662.1	XM_578662.1		503141	62652177	XM_578662.1	LOC503141	XP_578662.1	ILMN_1374032	0000770114	S	88	GGAGCCGCGGCATCAACGCCTGTTCTCACTCATCAGACATCATCTGTGAC					PREDICTED: Rattus norvegicus similar to LRRG00124 (LOC503141), mRNA.					
Rattus norvegicus	RefSeq	GI_62652171-S	ILMN_55768	LOC503138	XM_580261.1	XM_580261.1		503138	62652171	XM_580261.1	LOC503138	XP_580261.1	ILMN_1369566	0006400435	S	480	CATAGGCAAATGGACTTGTTCTCGGCGGCAGGAAACCCTGAGTGGGAGGG					PREDICTED: Rattus norvegicus LOC503138 (LOC503138), mRNA.					
Rattus norvegicus	RefSeq	GI_62648596-S	ILMN_54272	LOC500399	XM_575761.1	XM_575761.1		500399	62648596	XM_575761.1	LOC500399	XP_575761.1	ILMN_1351399	0001450113	S	297	CGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTACAACCTGGTAC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC500399), mRNA.					
Rattus norvegicus	RefSeq	GI_62638293	ILMN_268569	LOC308266	XM_001068699.1	XM_001068699.1		308266	109460429	XM_001068699.1	LOC308266	XP_001068699.1	ILMN_1649716	0001580463	S	1375	CACTCGGTTTGGGCTGAGTCGGCTTGGAGCGAGAACACCTTTGGAAGACC				1p13	PREDICTED: Rattus norvegicus similar to zinc finger CCCH-type containing 12D (LOC308266), mRNA.					
Rattus norvegicus	RefSeq	GI_57526899-S	ILMN_279257	RGD1306437	NM_001009635.1	NM_001009635.1		290303	57526899	NM_001009635.1	RGD1306437	NP_001009635.1	ILMN_1350561	0003140128	S	548	CAGGTATACGAGGGACCGTGTATCCAGTCGTGTATGTTGACGACAGTGCA	15	-	40684004-40684018:40688862-40688896	15p12	Rattus norvegicus similar to RIKEN cDNA 6330409N04 (RGD1306437), mRNA.				MGC95134	MGC95134
Rattus norvegicus	RefSeq	GI_62649002-S	ILMN_286506	RGD1562123_PREDICTED	XR_007660.1	XR_007660.1		362522	109476516	XR_007660.1	RGD1562123_predicted		ILMN_1359228	0004610193	S	7608	ACCCTCTCGGACAGTGCGTGGAAACCGAGGCTCCTGGACATTGAAGACTT				5q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1562123_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642806-S	ILMN_62043	LOC499515	XM_579972.1	XM_579972.1		499515	62642806	XM_579972.1	LOC499515	XP_579972.1	ILMN_1374258	0005130537	S	2154	ACACCAAATGCCCATCCGGTAGACACCCTTTCCCTGTCTAGAGTCAGAGG					PREDICTED: Rattus norvegicus LOC499515 (LOC499515), mRNA.					
Rattus norvegicus	RefSeq	GI_47576646-S	ILMN_275210	OLR1689	NM_001000889.1	NM_001000889.1		405190	47576646	NM_001000889.1	Olr1689	NP_001000889.1	ILMN_1358291	0006860053	S	876	AAGAAATGCATCCTTGAAGGGAGCTGTAAAGAAGTTACTGTTCAGGGAGA	20	-	558731-558780	20p12	Rattus norvegicus olfactory receptor 1689 (Olr1689), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1689	Olr1689
Rattus norvegicus	RefSeq	GI_61889078-S	ILMN_59086	MGL1	NM_022393.2	NM_022393.2		64195	61889078	NM_022393.2	Mgl1	NP_071788.2	ILMN_1374266	0002640292	S	1257	CTTCAGTGGTTTTAGCTGGGGAAGCCTGGAGTTTGGACTCCTCCTATCCC	10	+	57002722-57002771	10q24	Rattus norvegicus macrophage galactose N-acetyl-galactosamine specific lectin 1 (Mgl1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Mgll; Mgl	Mgll; Mgl
Rattus norvegicus	RefSeq	GI_62644912-S	ILMN_55355	LOC499775	XM_580014.1	XM_580014.1		499775	62644912	XM_580014.1	LOC499775	XP_580014.1	ILMN_1355188	0001190180	S	2741	CAGCTGTCAGGTCTTGGACTTGCCTGTGTCTCTGGAGGTGGAATTAAGAC					PREDICTED: Rattus norvegicus LOC499775 (LOC499775), mRNA.					
Rattus norvegicus	RefSeq	GI_62647897-S	ILMN_264853	LOC687406	XM_001075287.1	XM_001075287.1		687406	109462728	XM_001075287.1	LOC687406	XP_001075287.1	ILMN_1349843	0002760435	S	875	GGTGACCATGTAAACCATTTGATCCACCTGATCTATGATCTTGATGTGGC					PREDICTED: Rattus norvegicus similar to tRNA nucleotidyl transferase, CCA-adding, 1, transcript variant 2 (LOC687406), mRNA.					
Rattus norvegicus	RefSeq	GI_34876325-S	ILMN_269498	NET1	NM_001039023.1	NM_001039023.1		307098	84781677	NM_001039023.1	Net1	NP_001034112.1	ILMN_1350033	0002630167	S	1507	GGGAATCTCAGAGCCCAGCGACGGTCATGCGTGCTTCCTGGTGTTATGCA	17	+	77541693-77541742	17q12.3	Rattus norvegicus neuroepithelial cell transforming 1 (Net1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]	MGC114559	MGC114559
Rattus norvegicus	Unigene	Rn.128013	ILMN_161364	RN.128013	Rn.128013		Rn.128013		49496706	CO389115			ILMN_1530322	0006290497	S	232	ATCAGTTTGCCTTGATTCATCTTTTAGATTTAATTCGCCAGTTCTAAAGA					AGENCOURT_26621694 NIH_MGC_253 Rattus norvegicus cDNA clone IMAGE:7302678 5', mRNA					
Rattus norvegicus	RefSeq	GI_62664607-S	ILMN_50222	LOC498882	XM_574169.1	XM_574169.1		498882	62664607	XM_574169.1	LOC498882	XP_574169.1	ILMN_1363809	0002360341	S	961	GATCTCGGAGTGGGCTGTGTTTGTGAATTTCCTCACCCTCGGCCTCGCTG				18q12.1	PREDICTED: Rattus norvegicus similar to cytoskeleton associated protein 2 (LOC498882), mRNA.					
Rattus norvegicus	RefSeq	GI_62644548-S	ILMN_58741	LOC499727	XM_580008.1	XM_580008.1		499727	62644548	XM_580008.1	LOC499727	XP_580008.1	ILMN_1374987	0006510440	S	540	AGGCCTCTCTTCAGAGGAATGGGGAAGAGGGAGAGCCATGAAACATGCAG					PREDICTED: Rattus norvegicus LOC499727 (LOC499727), mRNA.					
Rattus norvegicus	RefSeq	GI_62666486-S	ILMN_267007	RGD1566184_PREDICTED	XM_001061554.1	XM_001061554.1		298331	109512483	XM_001061554.1	RGD1566184_predicted	XP_001061554.1	ILMN_1368572	0004920551	S	1050	TCAAGGATGCCACAATGCCATAGACCCAGAAGAGCAGAGAGTAATCTACC				Xq12	PREDICTED: Rattus norvegicus similar to Testis derived transcript (predicted) (RGD1566184_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34875546-S	ILMN_275114	LOC691552	XM_001078794.1	XM_001078794.1		691552	109504889	XM_001078794.1	LOC691552	XP_001078794.1	ILMN_1351704	0001410400	S	106	GCTTGCTCCTTTGGGAAAACGTGGCCTCCAAACCAACTGCCATTGTGTCC	17	-	44564979-44565028	17p11	PREDICTED: Rattus norvegicus similar to Chorionic somatomammotropin hormone 1 precursor (Placental lactogen I) (PL-I) (LOC691552), mRNA.					
Rattus norvegicus	RefSeq	GI_62663510-A	ILMN_275114	LOC691552	XM_001078794.1	XM_001078794.1		691552	109504889	XM_001078794.1	LOC691552	XP_001078794.1	ILMN_1376298	0000840341	S	714	GAGTGTGGAGTGTCCACCTTTTGAAGTCTTGCACCCAATGTTGAACCAGA	17	-	44560438-44560464:44560465-44560487	17p11	PREDICTED: Rattus norvegicus similar to Chorionic somatomammotropin hormone 1 precursor (Placental lactogen I) (PL-I) (LOC691552), mRNA.					
Rattus norvegicus	RefSeq	GI_62639142-S	ILMN_274219	ZNF575_PREDICTED	XM_001076652.1	XM_001076652.1		308430	109461413	XM_001076652.1	Znf575_predicted	XP_001076652.1	ILMN_1366713	0004560040	S	949	TTCACCAACGCAGCCACCACCAGCCGGAGAGCCAAGGAGAGAGGGAGTGA				1q21	PREDICTED: Rattus norvegicus zinc finger protein 575 (predicted) (Znf575_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647733-S	ILMN_267373	RGD1306746_PREDICTED	XM_001069792.1	XM_001069792.1		312511	109473786	XM_001069792.1	RGD1306746_predicted	XP_001069792.1	ILMN_1356962	0007050022	S	2034	GACCAGCCTTTGGAGCTGGCCCCTCTGACTACTATCACTTTCCCTTGAGG				4q34	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC25529 (predicted) (RGD1306746_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164072-S	ILMN_277267	V1RL1	NM_001009511.1	NM_001009511.1		494230	57164072	NM_001009511.1	V1rl1	NP_001009511.1	ILMN_1355622	0004560021	S	490	CACTTGGTGTACTGTGTAGGAGTAAAGGATTCCAAGCTCTTTCATGCAGG	1	+	63286722-63286771	1q12	Rattus norvegicus vomeronasal 1 receptor, L1 (V1rl1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655201-S	ILMN_49207	CTDSP1_PREDICTED	XM_343588.2	XM_343588.2		363249	62655201	XM_343588.2	Ctdsp1_predicted	XP_343589.2	ILMN_1371934	0001410487	S	2566	CATAACCCTGCTGGACAAGAAAGAACTTAGCCAAGAGGGACTGCCTGGGC				9q33	PREDICTED: Rattus norvegicus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 (predicted) (Ctdsp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661500-S	ILMN_264501	RGD1565713_PREDICTED	XM_001056785.1	XM_001056785.1		290239	109502427	XM_001056785.1	RGD1565713_predicted	XP_001056785.1	ILMN_1368947	0000520113	S	127	GTCGCTGTTCAAAAAGGAACAACCCCTAAGTGTTACCACGGCAAACCTGG				15p13	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1565713_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661326-S	ILMN_302357	LOC690317	XR_006857.1	XR_006857.1		690317	109501576	XR_006857.1	LOC690317		ILMN_1357777	0006770180	S	283	TACATCGCAGAGACGGTTCGGCTCTCCATTGATGCCCACCGGAAGTCCAT	15	-	27160027-27160076	15p14	PREDICTED: Rattus norvegicus similar to ATPase, H+ transporting, V1 subunit F (LOC690317), mRNA.					
Rattus norvegicus	RefSeq	GI_13928855-S	ILMN_62199	MAPK6	NM_031622.2	NM_031622.2		58840	82734228	NM_031622.2	Mapk6	NP_113810.2	ILMN_1353531	0002260332	S	3483	GCCAGCGTTGGCCGCAGTAACCAATGAGACTCGTCCGCCATTTATCAATG	8	-	80213373-80213422	8q24	Rattus norvegicus mitogen-activated protein kinase 6 (Mapk6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC124957; ERK3	MGC124957; ERK3
Rattus norvegicus	RefSeq	GI_62658825-S	ILMN_280661	BRI3BP	NM_001017487.1	NM_001017487.1		498176	62945333	NM_001017487.1	Bri3bp	NP_001017487.1	ILMN_1356542	0006510301	S	896	ACCTGGTGTTTCCCACTGTGTGTCCACCTTAGGAGCCATTGGAGGGGAAG	12	-	32271087-32271136	12q14	Rattus norvegicus Bri3 binding protein (Bri3bp), mRNA.					
Rattus norvegicus	RefSeq	GI_62642341-S	ILMN_59519	RGD1310475_PREDICTED	XM_215248.4	XM_215248.4		293949	109460131	XM_215248.4	RGD1310475_predicted	XP_215248.2	ILMN_1366025	0002100079	S	1627	AACCAGGAAGCCCACCTCCAGCAACATTGACTCCAGTAAGCTACACTTCC	1	-	248779509-248779558	1q54	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610010D20 (predicted) (RGD1310475_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662765-S	ILMN_273839	UBXD6_PREDICTED	XM_001059749.1	XM_001059749.1		290802	109504265	XM_001059749.1	Ubxd6_predicted	XP_001059749.1	ILMN_1354274	0005900020	S	1212	GGCCTTTGGAAGTGGGGGGAGGCTCGTCACTGGAGGACATAGGAATAACT				16q12.3	PREDICTED: Rattus norvegicus UBX domain containing 6 (predicted) (Ubxd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036667-S	ILMN_274747	TEKT1	NM_053508.2	NM_053508.2		85270	51036667	NM_053508.2	Tekt1	NP_445960.1	ILMN_1369351	0001410717	S	1029	GCCTGGAGAACAGGACCTACCGGCCTAACGTGGAGCTGTGTCGAGATGTC	10	-	59220807-59220856	10q24	Rattus norvegicus tektin 1 (Tekt1), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667342-S	ILMN_60203	RGD1566225_PREDICTED	XM_229139.3	XM_229139.3		317584	109511206	XM_229139.3	RGD1566225_predicted	XP_229139.3	ILMN_1372470	0003520138	S	243	GAGAAGGGAGAGAAGGAGGAGAGATGCAGATGCACCGCGGAAGCCCCCAT	X	+	136700544-136700593	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1566225_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881627-S	ILMN_60203	RGD1566225_PREDICTED	XM_229139.3	XM_229139.3		317584	109511206	XM_229139.3	RGD1566225_predicted	XP_229139.3	ILMN_1364851	0000840538	S	484	CACCAATGCCAGCGCGGGAAGTAAAACTTCAAGGGATGGGGCAAACCCAA	X	+	136700785-136700808:136700809-136700834	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1566225_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881631	ILMN_60203	RGD1566225_PREDICTED	XM_229139.3	XM_229139.3		317584	109511206	XM_229139.3	RGD1566225_predicted	XP_229139.3	ILMN_1650814	0002350204	S	231	CTATACTGGACCGAGAAGGGAGAGAAGGAGGAGAGATGCAGATGCACCGC	X	+	136700532-136700581	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1566225_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651457-S	ILMN_267085	SERPINA9_PREDICTED	XM_001067371.1	XM_001067371.1		299274	109479898	XM_001067371.1	Serpina9_predicted	XP_001067371.1	ILMN_1358024	0002370292	S	1130	TCCGCTCAAGGGACACCCCATCTTCCACCATCGCCTTCAATGAGCCCTTC				6q32	PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 (predicted) (Serpina9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660592-S	ILMN_271766	C1QTNF7_PREDICTED	XM_001060132.1	XM_001060132.1		305423	109500737	XM_001060132.1	C1qtnf7_predicted	XP_001060132.1	ILMN_1362875	0005080136	S	1238	CAGGCTGGGCAGACAGCTTGTTCTCCGGGTTTCTCCTCTATGTTGATACA				14q21	PREDICTED: Rattus norvegicus C1q and tumor necrosis factor related protein 7 (predicted) (C1qtnf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575898-S	ILMN_285704	OLR598	NM_001000332.1	NM_001000332.1		295828	47575898	NM_001000332.1	Olr598	NP_001000332.1	ILMN_1368172	0003130500	S	681	CCGCTCCACTGAGGGCAGGTTCAAAGCATTCTCCACCTGTACCTCTCATC	3	+	71683005-71683054	3q24	Rattus norvegicus olfactory receptor 598 (Olr598), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-71578697-71579629_ORF; Olr598	ratchr3-71578697-71579629_ORF; Olr598
Rattus norvegicus	RefSeq	GI_62638756-S	ILMN_294644	LOC502243	XR_006315.1	XR_006315.1		502243	109457818	XR_006315.1	LOC502243		ILMN_1356234	0001400735	S	135	CCACCGCCGGCTCACAGGAACCCGAGTGGCGGTCAAAGTTCTCTGAAAGA	1	+	50322819-50322868	1q12	PREDICTED: Rattus norvegicus similar to KP78b CG17216-PA (LOC502243), mRNA.					
Rattus norvegicus	RefSeq	GI_47575978-S	ILMN_287314	OLR1459	NM_001000770.1	NM_001000770.1		405045	47575978	NM_001000770.1	Olr1459	NP_001000770.1	ILMN_1353798	0002030152	S	412	TATTGTCATGCGTTAGTGGTCACTGCCTGGGTGAGTGGGTCCATCTACTC	10	+	45075264-45075313	10q22	Rattus norvegicus olfactory receptor 1459 (Olr1459), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1459	Olr1459
Rattus norvegicus	RefSeq	Rn.35652	ILMN_263959	RGD1305089_PREDICTED	XM_001079134.1	XM_001079134.1		299050	109479400	XM_001079134.1	RGD1305089_predicted	XP_001079134.1	ILMN_1530438	0002450519	S	824	AAATAGCAAAATACTCAATCTACTGGTTACTAAAGCTAGAACACTCAAGA				6q23	PREDICTED: Rattus norvegicus similar to 1110008L16Rik protein (predicted) (RGD1305089_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650700-S	ILMN_263959	RGD1305089_PREDICTED	XM_001079134.1	XM_001079134.1		299050	109479400	XM_001079134.1	RGD1305089_predicted	XP_001079134.1	ILMN_1371310	0001410528	S	2343	GAAGACCTGGTGCCGAGATCCTCCTGTGAAGTGCCCACCAAATGGCTGTG				6q23	PREDICTED: Rattus norvegicus similar to 1110008L16Rik protein (predicted) (RGD1305089_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929149-S	ILMN_296852	DEFB1	NM_031810.1	NM_031810.1		83687	13929149	NM_031810.1	Defb1	NP_113998.1	ILMN_1373177	0004480082	S	187	GGAGGATTCTGTCTCCGCTCCAGCTGCCCATCTCATACCAAACTACAAGG	16	-	74980214-74980263	16q12.5	Rattus norvegicus defensin beta 1 (Defb1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_61557286-S	ILMN_265043	RBM39	NM_001013207.1	NM_001013207.1		362251	61557286	NM_001013207.1	Rbm39	NP_001013225.1	ILMN_1364535	0003990114	S	1678	GCTGCGGCTATTGCTGCTGTCAATGCGTTGCATGGCAGGTGGTTTGCTGG	3	-	146555453-146555454:146555547-146555594	3q42	Rattus norvegicus RNA binding motif protein 39 (Rbm39), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109490	MGC109490
Rattus norvegicus	RefSeq	GI_62645492-S	ILMN_61689	LOC295976	XM_238275.3	XM_238275.3		295976	62645492	XM_238275.3	LOC295976	XP_238275.2	ILMN_1359812	0006020020	S	507	AGACCATGCTGACTGCCTGCACCCTCAACCTGGGGAGCCTTTATGGTGTG					PREDICTED: Rattus norvegicus hypothetical LOC295976 (LOC295976), mRNA.					
Rattus norvegicus	RefSeq	GI_62639183-S	ILMN_275482	RGD1309393_PREDICTED	XM_001070408.1	XM_001070408.1		292724	109461429	XM_001070408.1	RGD1309393_predicted	XP_001070408.1	ILMN_1352483	0006020725	S	2724	TACACCCCTACCCTTACCTCCCCAGAGGACACTGTGAGTCCACAACTGGG				1q21	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 7, ERATO Doi 462, expressed (predicted) (RGD1309393_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657430	ILMN_63312	RGD1562974_PREDICTED	XM_577148.2	XM_577148.2		501747	109489410	XM_577148.2	RGD1562974_predicted	XP_577148.2	ILMN_1649813	0001450746	S	7588	ACAACAGATTACACCTACTCGACTGTACCCCGTCGCTGTGGGGGCAGCCA	10	-	106552916-106552965	10q32.3	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434P0316 (predicted) (RGD1562974_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758155-S	ILMN_286827	GAB2	NM_053417.1	NM_053417.1		84477	16758155	NM_053417.1	Gab2	NP_445869.1	ILMN_1353793	0003390142	S	1481	GAAGTGAGATCCAGCCACCCCCAGTCAACCGAAACCTCAAACCTGACCGA	1	+	154541318-154541367	1q32	Rattus norvegicus GRB2-associated binding protein 2 (Gab2), mRNA.		Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644663-S	ILMN_65583	LOC365987	XM_345321.2	XM_345321.2		365987	62644663	XM_345321.2	LOC365987	XP_345322.2	ILMN_1366594	0001580433	S	110	GCCAGGAGATGGGAATCAAGCAGGGGGCAAGGTGCTAAATGGGAGAGTTA					PREDICTED: Rattus norvegicus similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1) (LOC365987), mRNA.					
Rattus norvegicus	RefSeq	GI_62638367-S	ILMN_262762	CRSP3	XM_001057683.1	XM_001057683.1		309565	109457626	XM_001057683.1	Crsp3	XP_001057683.1	ILMN_1356783	0002970647	S	3849	CAGCGATTCCAGCAGGAGAGAACCCGGTGCATGATCGAGATTGGAGTGGC	1	-	21015596-21015607:21016443-21016480	1p12	PREDICTED: Rattus norvegicus cofactor required for Sp1 transcriptional activation, subunit 3 (Crsp3), mRNA.					
Rattus norvegicus	RefSeq	GI_62656211-S	ILMN_267473	SPECC1	NM_001039017.1	NM_001039017.1		303208	84781645	NM_001039017.1	Specc1	NP_001034106.1	ILMN_1349282	0001230541	S	2359	AGAAGAACGCCAGGCTGCAGAAGGAGCTGGGAGACATACAGGGGCATAGC	10	+	48303393-48303442	10q23	Rattus norvegicus sperm antigen with calponin homology and coiled-coil domains 1 (Specc1), mRNA.				MGC116245	MGC116245
Rattus norvegicus	RefSeq	GI_57113822-S	ILMN_297617	V1RG6	NM_001008957.1	NM_001008957.1		299649	57113822	NM_001008957.1	V1rg6	NP_001008957.1	ILMN_1353826	0001240746	S	550	GTGTTATTACTGTGCTTCTCTGATGCTGTGTGTCTGGGTCTCATGGCCTG	7	+	15725200-15725249	7q12	Rattus norvegicus vomeronasal 1 receptor, G6 (V1rg6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577272-S	ILMN_290701	OLR399	NM_001000560.1	NM_001000560.1		366026	47577272	NM_001000560.1	Olr399	NP_001000560.1	ILMN_1350673	0005080369	S	635	TCCTGGTCTCTTATGGCCGCATTGGAGTCACCATTCTGAAAGCACCCTCC	3	+	15755051-15755100	3p11	Rattus norvegicus olfactory receptor 399 (Olr399), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr399	Olr399
Rattus norvegicus	RefSeq	GI_20806162-S	ILMN_264780	CKLF	NM_139111.1	NM_139111.1		245978	20806162	NM_139111.1	Cklf	NP_620811.1	ILMN_1366945	0002340603	S	199	GCCCTTCTGCCTCAGTCTGAAATGCTTTGTGAAGACGCTGCGGTTGGTGG	19	-	661924-661929:664973-665016	19p14	Rattus norvegicus chemokine-like factor (Cklf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IDA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence IDA]; The regulated release of a substance by a cell [goid 32940] [evidence ISS]; The movement of a macrophage in response to an external stimulus [goid 48246] [evidence ISS]; The directed movement of a lymphocyte in response to an external stimulus [goid 48247] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]	Cklf1	Cklf1
Rattus norvegicus	RefSeq	GI_47577114-S	ILMN_269110	OLR758	NM_001000369.1	NM_001000369.1		296010	47577114	NM_001000369.1	Olr758	NP_001000369.1	ILMN_1354444	0004780048	S	432	GGTAGTAGCTGCTTGGGTCATAGGCATGATTCATGCAGTGTCTCAGTTTA	3	+	97038526-97038575	3q34	Rattus norvegicus olfactory receptor 758 (Olr758), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-96934523-96935461_ORF; Olr758	ratchr3-96934523-96935461_ORF; Olr758
Rattus norvegicus	RefSeq	GI_8393525-S	ILMN_283548	HGF	NM_017017.1	NM_017017.1		24446	8393525	NM_017017.1	Hgf	NP_058713.1	ILMN_1353832	0001050047	S	2129	GGGGCTGAAAAGATTGGATCAGGACCTTGTGAGGGAGATTATGGTGGCCC	4	-	14864664-14864681:14867297-14867328	4q11	Rattus norvegicus hepatocyte growth factor (Hgf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence IEA]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; The series of molecular signals generated as a consequence of the hepatocyte growth factor receptor binding to one of its physiological ligands [goid 48012] [evidence IEA]; The series of molecular signals generated as a consequence of the hepatocyte growth factor receptor binding to one of its physiological ligands [goid 48012] [evidence ISS]; The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 51450] [evidence IEA]; The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 51450] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with the hepatocyte growth factor receptor [goid 5171] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IMP]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	HPTA	HPTA
Rattus norvegicus	RefSeq	GI_62646623	ILMN_298057	MGC125233	NM_001037794.1	NM_001037794.1		499967	83642817	NM_001037794.1	MGC125233	NP_001032883.1	ILMN_1651002	0001740035	S	1597	TAGCTGCCCAAAGCGTGCTGGCAGAAATGAGTGGGTATCACCAAGCCGGG	4	-	5004329-5004378	4q11	Rattus norvegicus similar to Gene model 443 (MGC125233), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661503-S	ILMN_265276	MCPT3	XM_001057328.1	XM_001057328.1		290244	109502436	XM_001057328.1	Mcpt3	XP_001057328.1	ILMN_1359520	0002680520	S	421	AAATGTGCTGGGCAGCTGGTTGGGGACGAACTGGAGTGACAGAACCGACC				15p13	PREDICTED: Rattus norvegicus mast cell peptidase 3 (Mcpt3), mRNA.	Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence TAS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577552-S	ILMN_267835	OLR669	NM_001000349.1	NM_001000349.1		295876	47577552	NM_001000349.1	Olr669	NP_001000349.1	ILMN_1368250	0003440253	S	390	TTACTCTTCCATCATGAATCGGAGGCTCTGTGGCACTTTGGTGGGGGTAG	3	-	73185343-73185392	3q24	Rattus norvegicus olfactory receptor 669 (Olr669), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr669	Olr669
Rattus norvegicus	RefSeq	GI_47577986-S	ILMN_297027	OLR108	NM_001000149.1	NM_001000149.1		293247	47577986	NM_001000149.1	Olr108	NP_001000149.1	ILMN_1359151	0006380609	S	499	CTACCATTCTGCAAGGGGCAGATGCTGTCCTACTCCTACTGTATCCACCC	1	+	161270634-161270683	1q32	Rattus norvegicus olfactory receptor 108 (Olr108), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr108; ratchr1-161349882-161350823_ORF	Olr108; ratchr1-161349882-161350823_ORF
Rattus norvegicus	RefSeq	GI_62647559-S	ILMN_49433	LOC502817	XM_578316.1	XM_578316.1		502817	62647559	XM_578316.1	LOC502817	XP_578316.1	ILMN_1352514	0006350154	S	3	AGAGTTCTCACTCAACTCCTAGGTCTCCTGATGCTCTGGCTCTCAGGTGC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa light chain VC region (LOC502817), mRNA.					
Rattus norvegicus	RefSeq	GI_16758363-S	ILMN_266016	S100A9	NM_053587.1	NM_053587.1		94195	16758363	NM_053587.1	S100a9	NP_446039.1	ILMN_1361341	0006130064	S	344	CACAGGCACGGCAAAGGCTGTGGGAAGTAATTAAGAGGTCGCCATGTAAC	2	-	182985559-182985587:182985588-182985608	2q34	Rattus norvegicus S100 calcium binding protein A9 (S100a9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence IEA]; The movement of a leukocyte in response to an external stimulus [goid 30595] [evidence ISS]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence IEA]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins [goid 45113] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins [goid 45113] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Mrp14	Mrp14
Rattus norvegicus	RefSeq	GI_62654543-S	ILMN_62418	LARS2_PREDICTED	XM_343511.3	XM_343511.3		363172	109484137	XM_343511.3	Lars2_predicted	XP_343512.2	ILMN_1353499	0006290717	S	2968	TCAGGGACATTGGCTTTTGTGCCAGGACCAACTGGAGTCAGCAGGAGGCC	8	+	128232343-128232392	8q32	PREDICTED: Rattus norvegicus leucyl-tRNA synthetase, mitochondrial (predicted) (Lars2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083608-S	ILMN_280279	MECP2	NM_022673.1	NM_022673.1		29386	12083608	NM_022673.1	Mecp2	NP_073164.1	ILMN_1353024	0006980204	S	1440	GAGGGAGAGCGCAAAGACATTGTTTCATCCTCCATGCCGAGGCCAAACAG	X	-	159980662-159980711	Xq37	Rattus norvegicus methyl CpG binding protein 2 (Mecp2), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IDA]; A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A compact and highly condensed form of chromatin [goid 792] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A compact and highly condensed form of chromatin [goid 792] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state [goid 42551] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]	Interacting selectively with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices [goid 400] [evidence IDA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a methylated cytosine/guanine dinucleotide [goid 8327] [evidence ISS]; Interacting selectively with a methylated cytosine/guanine dinucleotide [goid 8327] [evidence IEA]; Interacting selectively with a methylated cytosine/guanine dinucleotide [goid 8327] [evidence IDA]; Interacting selectively with double-stranded methylated DNA. Cytosine methylation in DNA is an important mechanism for establishing stable heritable epigenetic marks [goid 10385] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with DNA that is assembled into chromatin [goid 31490] [evidence IDA]; Interacting selectively with a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme [goid 35197] [evidence ISS]; Interacting selectively with a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme [goid 35197] [evidence IEA]; Interacting selectively with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters [goid 45322] [evidence IDA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a methylated cytosine/guanine dinucleotide [goid 8327] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme [goid 35197] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a methylated cytosine/guanine dinucleotide [goid 8327] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme [goid 35197] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114345-S	ILMN_61123	SSR1_PREDICTED	NM_001008891.1	NM_001008891.1		361233	57114345	NM_001008891.1	Ssr1_predicted	NP_001008891.1	ILMN_1361684	0006650452	S	945	GACCCTTGCGGCCTGGACGTCTTCTTTGCGCCAGCTTGCTGTTTGTGGAA				17p12	Rattus norvegicus signal sequence receptor, alpha (predicted) (Ssr1_predicted), mRNA.				Ac2-238; Ssr1	Ac2-238; Ssr1
Rattus norvegicus	RefSeq	GI_62718027-S	ILMN_269911	LOC301118	XM_001059927.1	XM_001059927.1		301118	109486600	XM_001059927.1	LOC301118	XP_001059927.1	ILMN_1361998	0001240671	S	540	CAGGGATCTTCGGCATCTGATTGCTGTTTCTGTGATCTTGTGGGCCGCCG					PREDICTED: Rattus norvegicus similar to N-acylsphingosine amidohydrolase 3 (LOC301118), mRNA.					
Rattus norvegicus	RefSeq	GI_62644550-S	ILMN_284723	RGD1566247_PREDICTED	XM_001079838.1	XM_001079838.1		295554	109467775	XM_001079838.1	RGD1566247_predicted	XP_001079838.1	ILMN_1348855	0001450176	S	197	TAGGCCACTGTGGTTCTTTGCTGGTGAGTTCTATCCCTGCCACCAGGGGC				2q45	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (predicted) (RGD1566247_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663897	ILMN_267596	SEPHS1	XM_001066465.1	XM_001066465.1		291314	109506087	XM_001066465.1	Sephs1	XP_001066465.1	ILMN_1649947	0003830278	S	2899	AACTCACCCAACCTTCTCAACACGGAACACCAGGAAACCACCACTGGACC				17q12.3	PREDICTED: Rattus norvegicus selenophosphate synthetase 1 (Sephs1), mRNA.			Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + selenide + H2O = AMP + selenophosphate + phosphate [goid 4756] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655724-S	ILMN_276060	RGD1304902_PREDICTED	XM_001077479.1	XM_001077479.1		287070	109489622	XM_001077479.1	RGD1304902_predicted	XP_001077479.1	ILMN_1357917	0006510619	S	2912	CCTTGGAGATTCTTGACTTACGAGGAAACGATGTTGGGGTAGCTGGAGCC				10q12	PREDICTED: Rattus norvegicus similar to NOD3 (predicted) (RGD1304902_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648548-S	ILMN_52106	MYBL1_PREDICTED	XM_232620.3	XM_232620.3		297783	62648548	XM_232620.3	Mybl1_predicted	XP_232620.3	ILMN_1363017	0004210364	S	4598	CTGAAGATGCCAAGCATACAGGTAGCAGCCATCCGTGCATGGAAACTGAC				5q11	PREDICTED: Rattus norvegicus myeloblastosis oncogene-like 1 (predicted) (Mybl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659259-S	ILMN_267741	RGD1306487_PREDICTED	XR_009610.1	XR_009610.1		304759	109498578	XR_009610.1	RGD1306487_predicted		ILMN_1352197	0002510458	S	2958	CAGCGTGCTCACCAAGGAGGACTTCAGACTTGCAGGTGCCTTTTCCTCAG				13q12	PREDICTED: Rattus norvegicus similar to RAB3 GTPase-activating protein (predicted) (RGD1306487_predicted), misc RNA.					
Rattus norvegicus	RefSeq	GI_62640936-S	ILMN_279400	HBXAP_PREDICTED	XM_001064125.1	XM_001064125.1		308839	109462427	XM_001064125.1	Hbxap_predicted	XP_001064125.1	ILMN_1359814	0001090056	S	4707	AATCTGTGAGGGCCCAAAACAGAATTTAGGGTGGGAGAAAGCACTTGTGC				1q32	PREDICTED: Rattus norvegicus hepatitis B virus x associated protein (predicted) (Hbxap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978540-S	ILMN_291789	ATF3	NM_012912.1	NM_012912.1		25389	6978540	NM_012912.1	Atf3	NP_037044.1	ILMN_1363083	0006620446	S	1586	CACAGCCCGTGGAGACTGGTATTTGAAGCCAGGAGTGGGGCAAGGAAGGT	13	-	107191880-107191929	13q27	Rattus norvegicus activating transcription factor 3 (Atf3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence TAS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	LRF-1; LRFI	LRF-1; LRFI
Rattus norvegicus	RefSeq	GI_62645566-S	ILMN_65145	MEIS2_PREDICTED	XM_230449.3	XM_230449.3		311311	62645566	XM_230449.3	Meis2_predicted	XP_230449.3	ILMN_1353279	0005890044	S	2276	GGGCCAATGAGAAAAGAACCACGCTGCGGAGAGAGATGGACACTTGGCTG				3q35	PREDICTED: Rattus norvegicus Meis1, myeloid ecotropic viral integration site 1 homolog 2  (predicted) (Meis2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659929-S	ILMN_263193	CENPF	XM_001067266.1	XM_001067266.1		257649	109499265	XM_001067266.1	Cenpf	XP_001067266.1	ILMN_1351053	0002810739	S	8962	CGGAGAACAACTATGGCAACCAGAACAAGCCCCCGCCTTGCTGCACAGAA				13q27	PREDICTED: Rattus norvegicus centromere autoantigen F (Cenpf), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence ISS]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; The region of a condensed chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions [goid 940] [evidence ISS]; The region of a condensed chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions [goid 940] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; The nucleus of either the ovum or the spermatozoon following fertilization. Thus, in the fertilized ovum, there are two pronuclei, one originating from the ovum, the other from the spermatozoon that brought about fertilization; they approach each other, but do not fuse until just before the first cleavage, when each pronucleus loses its membrane to release its contents [goid 45120] [evidence IEA]; The nucleus of either the ovum or the spermatozoon following fertilization. Thus, in the fertilized ovum, there are two pronuclei, one originating from the ovum, the other from the spermatozoon that brought about fertilization; they approach each other, but do not fuse until just before the first cleavage, when each pronucleus loses its membrane to release its contents [goid 45120] [evidence ISS]	Progression through G2 phase, one of two 'gap' phases in the mitotic cell cycle; G2 is the interval between the completion of DNA synthesis and the beginning of mitosis [goid 85] [evidence ISS]; Progression through G2 phase, one of two 'gap' phases in the mitotic cell cycle; G2 is the interval between the completion of DNA synthesis and the beginning of mitosis [goid 85] [evidence ISS]; Progression through M phase, the part of the mitotic cell cycle during which mitosis takes place [goid 87] [evidence ISS]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the spindle [goid 51310] [evidence ISS]	Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with dynein, the multisubunit protein complex that is associated with microtubules [goid 45502] [evidence ISS]; Interacting selectively with dynein, the multisubunit protein complex that is associated with microtubules [goid 45502] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665222-S	ILMN_267905	WWP2_PREDICTED	XM_001076615.1	XM_001076615.1		291999	109508848	XM_001076615.1	Wwp2_predicted	XP_001076615.1	ILMN_1359973	0003870717	S	4020	GGACTCCTCACATACATCATAAAAGCTGCTCCTTGGCTGGGTGGGGACCA				19q12	PREDICTED: Rattus norvegicus WW domain containing E3 ubiquitin protein ligase 2 (predicted) (Wwp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665220-S	ILMN_267905	WWP2_PREDICTED	XM_001076615.1	XM_001076615.1		291999	109508848	XM_001076615.1	Wwp2_predicted	XP_001076615.1	ILMN_1371793	0001940672	S	2661	ATGCCATCGAGGAGACTGAGGGTTTTGGACAGGAGTAGCTGAGGCTGCCC				19q12	PREDICTED: Rattus norvegicus WW domain containing E3 ubiquitin protein ligase 2 (predicted) (Wwp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647846-S	ILMN_266271	MRPS25	NM_001025408.1	NM_001025408.1		297459	70794765	NM_001025408.1	Mrps25	NP_001020579.1	ILMN_1369787	0003840102	S	487	CTGGCCTGGTGCCCTTACCCAAGGAGATGACAGGGAAGTACAAAGCTGCT	4	-	126351314-126351363	4q34	Rattus norvegicus mitochondrial ribosomal protein S25 (Mrps25), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]			Shd10	Shd10
Rattus norvegicus	RefSeq	GI_62649907-S	ILMN_53569	RGD1309944_PREDICTED	XM_233584.4	XM_233584.4		298576	109475688	XM_233584.4	RGD1309944_predicted	XP_233584.1	ILMN_1360915	0004810707	S	803	CTCTGGAAGGTTCTGGTACTTGTGTTCGGCTTTGCCACCTGCGCCACCCT	5	+	157218964-157219013	5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610009K11 (predicted) (RGD1309944_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758837-S	ILMN_275861	KCNS1	NM_053954.1	NM_053954.1		117023	16758837	NM_053954.1	Kcns1	NP_446406.1	ILMN_1363696	0005700450	S	2510	AGCAGATGGTCCTGGGGGTCTATAAGAAAGCAGACTGAACAAGCCACGGG	3	-	155103541-155103590	3q42	Rattus norvegicus K+ voltage-gated channel, subfamily S, 1 (Kcns1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA];  [goid 5251] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15459] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv9.1	Kv9.1
Rattus norvegicus	RefSeq	GI_62655998-S	ILMN_272067	RGD1564516_PREDICTED	XR_008627.1	XR_008627.1		497891	109490599	XR_008627.1	RGD1564516_predicted		ILMN_1365284	0006040746	S	981	TGCGGAGACACAGGAGGCCAGACAACACCGAAGATAGTAAGAGTGTCCTC				10q21	PREDICTED: Rattus norvegicus similar to smuckler (predicted) (RGD1564516_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646957-S	ILMN_66590	RGD1560915_PREDICTED	XM_575419.2	XM_575419.2		500065	109471813	XM_575419.2	RGD1560915_predicted	XP_575419.1	ILMN_1361075	0007050121	S	1902	GAGTGGCAACACCTCCTACCCGCATCCCCTGCACCAGAACTCAGTGTTTC	4	+	56608242-56608291	4q22	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC30714 (predicted) (RGD1560915_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742756-S	ILMN_274430	CAV3	NM_019155.2	NM_019155.2		29161	55742756	NM_019155.2	Cav3	NP_062028.1	ILMN_1369419	0002260746	S	973	GCTGCACCAGGGAACACTATGCTCTGTGTCTGTAAGGTGGTTGTGTGTCC	4	+	148309998-148310047	4q42	Rattus norvegicus caveolin 3 (Cav3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence IEA]; A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase [goid 16010] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the plasma membrane [goid 7009] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the plasma membrane [goid 7009] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IMP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process that modulates the frequency, rate or extent of skeletal muscle contraction [goid 14819] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes [goid 31579] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes [goid 31579] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence IEA]; Any process that reduces cell size [goid 45792] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence IEA]; Any process that stops or reduces the activity of the enzyme nitric-oxide synthase [goid 51001] [evidence ISS]; Any process that stops or reduces the activity of the enzyme nitric-oxide synthase [goid 51001] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51925] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51925] [evidence IEA]; Any process that modulates the frequency, rate or extent of cardiac muscle contraction [goid 55117] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Inhibits signal transduction the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form [goid 16299] [evidence TAS];  [goid 17080] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence ISS]; Functions to provide a physical support for the assembly of a multiprotein complex [goid 32947] [evidence IDA]	MGC105449	MGC105449
Rattus norvegicus	RefSeq	GI_62654911-S	ILMN_62155	LMAN2L_PREDICTED	XM_217385.4	XM_217385.4		301343	109485935	XM_217385.4	Lman2l_predicted	XP_217385.4	ILMN_1351577	0006860377	S	518	CACCTATCCCAATGAGGAGAAGCAGCACGAGGCCCAGAAGAGGCGCTATT	9	-	35366153-35366172:35378128-35378157	9q21	PREDICTED: Rattus norvegicus lectin, mannose-binding 2-like (predicted) (Lman2l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865933-A	ILMN_271097	ELF2	NM_001012181.2	NM_001012181.2		361944	76781450	NM_001012181.2	Elf2	NP_001012181.1	ILMN_1376700	0006180068	S	2737	GCACTGGGCTCTCGCAGTGCTCACTTAACTGGTGCTATGTGAAGACTCTG	2	-	140144728-140144777	2q26	Rattus norvegicus E74-like factor 2 (Elf2), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643426-I	ILMN_271097	ELF2	NM_001012181.2	NM_001012181.2		361944	76781450	NM_001012181.2	Elf2	NP_001012181.1	ILMN_1375290	0001230170	S	3251	CAGGCTCGCATGAACTCGCCAGGTAGCTCTGATACCTGGTGTTTGTTTCC	2	-	140144214-140144263	2q26	Rattus norvegicus E74-like factor 2 (Elf2), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648114-S	ILMN_52967	RGD1561215_PREDICTED	XM_575659.2	XM_575659.2		500310	109472586	XM_575659.2	RGD1561215_predicted	XP_575659.2	ILMN_1368166	0003130019	S	373	CCAGACAACCAGGGAGTGAACGTGTTGCAGAAGTACCTGGGAAAGGACTT	4	+	158644466-158644483:158649233-158649264	4q42	PREDICTED: Rattus norvegicus similar to killer cell lectin-like receptor subfamily G, member 1 (predicted) (RGD1561215_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741505-S	ILMN_270730	MGC94915	NM_001007009.1	NM_001007009.1		362712	55741505	NM_001007009.1	MGC94915	NP_001007010.1	ILMN_1363124	0001450102	S	2148	CTACCTTGTGCTGACCCAGAGGGCCAAGCTGCTGATGGAGAATGACTCCC	6	-	26011372-26011419:26011761-26011762	6q14	Rattus norvegicus similar to hypothetical protein (MGC94915), mRNA.					
Rattus norvegicus	RefSeq	GI_56090422-S	ILMN_294511	UBR7	NM_001007705.1	NM_001007705.1		314399	56090422	NM_001007705.1	Ubr7	NP_001007706.1	ILMN_1357610	0000770458	S	2931	GCACCAAGGTGTAGCAGTAGTGTCAGTGAGCAGCAAAAATGCAAACCGCC	6	+	127051220-127051269	6q32	Rattus norvegicus ubiquitin protein ligase E3 component n-recognin 7 (putative) (Ubr7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]		Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94098	MGC94098
Rattus norvegicus	RefSeq	GI_62655334-S	ILMN_63931	LOC501175	XM_576603.1	XM_576603.1		501175	62655334	XM_576603.1	LOC501175	XP_576603.1	ILMN_1359780	0001850603	S	1687	GCCACATCCCACCTGTGGAAGTTCAGAGTTACCGTCCACTTAGAACCACC					PREDICTED: Rattus norvegicus similar to SP140 nuclear body protein isoform 1 (LOC501175), mRNA.					
Rattus norvegicus	RefSeq	GI_31341038-S	ILMN_268303	CLIC6	NM_176078.2	NM_176078.2		304081	31341038	NM_176078.2	Clic6	NP_788267.1	ILMN_1371422	0003120372	S	1853	CAGCCCGCTGCCAGACGAAATAGATGCCTACAGTACGGAGGATGTCACTG	11	+	32551102-32551151	11q11	Rattus norvegicus chloride intracellular channel 6 (Clic6), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IPI]; Interacting selectively with a dopamine receptor [goid 50780] [evidence IPI]	Clic6b	Clic6b
Rattus norvegicus	RefSeq	GI_62651178-S	ILMN_265372	LOC683544	XM_001066450.1	XM_001066450.1		683544	109479877	XM_001066450.1	LOC683544	XP_001066450.1	ILMN_1354322	0000450450	S	599	GGTGACATTGGTAGACATGGATGACAGGTGGACATGAGCTGACCCTGGGC					PREDICTED: Rattus norvegicus similar to proline rich membrane anchor 1 (LOC683544), mRNA.					
Rattus norvegicus	RefSeq	GI_62652414-S	ILMN_68048	LOC299898	XM_238499.2	XM_238499.2		299898	62652414	XM_238499.2	LOC299898	XP_238499.1	ILMN_1351601	0002640673	S	434	TGCTGCTGTTGCAGAAGAGGTTTCAGATTCCTTGGACCAGGAGGGACAAC					PREDICTED: Rattus norvegicus hypothetical LOC299898 (LOC299898), mRNA.					
Rattus norvegicus	RefSeq	GI_62643509-S	ILMN_266738	DHX36_PREDICTED	XM_001058645.1	XM_001058645.1		310461	109466686	XM_001058645.1	Dhx36_predicted	XP_001058645.1	ILMN_1360136	0003390025	S	2937	GTGCCCTCATCCTGTAGATTGGAACGACACCAAATCCAGAGACTGTGCAG				2q31	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 36 (predicted) (Dhx36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661440-S	ILMN_64920	LOC498512	XM_573772.1	XM_573772.1		498512	62661440	XM_573772.1	LOC498512	XP_573772.1	ILMN_1354410	0005570390	S	632	CGGGGCTGTGAAAACATAGCTCCTGTTAGGAGTGCTGACTGTTTATCCTG					PREDICTED: Rattus norvegicus similar to Oxa1l protein (LOC498512), mRNA.					
Rattus norvegicus	RefSeq	GI_62643537-S	ILMN_274236	MLF1_PREDICTED	XM_001065492.1	XM_001065492.1		310483	109466772	XM_001065492.1	Mlf1_predicted	XP_001065492.1	ILMN_1361636	0003610347	S	755	GCGAAACGTGGATCATGAGCATCTAGGGTCACGGGAACTCAAAAGGAGAG				2q31	PREDICTED: Rattus norvegicus myeloid leukemia factor 1 (predicted) (Mlf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664668	ILMN_53782	PARD6G_PREDICTED	XM_225733.4	XM_225733.4		307237	109506787	XM_225733.4	Pard6g_predicted	XP_225733.2	ILMN_1650781	0002370112	S	1206	GCTCTGGGAGGGAGAGCAATGGCAGCATCCACAGATTTCTCAGCTCTCTG	18	+	77007799-77007848	18q12.3	PREDICTED: Rattus norvegicus par-6 partitioning defective 6 homolog gamma (C. elegans) (predicted) (Pard6g_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643342-S	ILMN_66109	ACAD9	XM_574921.2	XM_574921.2		294973	109464688	XM_574921.2	Acad9	XP_574921.1	ILMN_1367718	0005220050	S	2688	CCTTAGTGCTGCATGGGACTGTTAGCTTGCTGGCTTGCTCTTGTGTGTGG	2	+	122586163-122586212	2q25	PREDICTED: Rattus norvegicus acyl-Coenzyme A dehydrogenase family, member 9, transcript variant 2 (Acad9), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IEA]; Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639852-S	ILMN_286142	ATP10A	XM_001054901.1	XM_001054901.1		365266	109462042	XM_001054901.1	Atp10a	XP_001054901.1	ILMN_1352368	0003140494	S	5227	GCAGGGAGGAAAGAGGACAGAGAGAAGGGCGTGTGGCCTTTGAGGCAAAT				1q22	PREDICTED: Rattus norvegicus ATPase, class V, type 10A, transcript variant 1 (Atp10a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the movement of phospholipids from one membrane face to the other ('flippase' activity), driven by the hydrolysis of ATP [goid 4012] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646789-S	ILMN_58577	LOC500005	XM_575359.2	XM_575359.2		500005	109471697	XM_575359.2	LOC500005	XP_575359.2	ILMN_1370758	0000840594	S	2338	GCCTCTGTGAGGGTAGCCTGACTATGGCTAAGACAGGGACTGGTGACTGG	4	+	27233951-27234000	4q13	PREDICTED: Rattus norvegicus similar to ODAG protein (LOC500005), mRNA.					
Rattus norvegicus	RefSeq	GI_27700105-S	ILMN_265119	RGD1311147_PREDICTED	XM_001059939.1	XM_001059939.1		290230	109502434	XM_001059939.1	RGD1311147_predicted	XP_001059939.1	ILMN_1353012	0004480563	S	314	GCCGCTGCTTCACGGACAAGTGAGATAGAAGGGGCCAACCAACTCCTGGA				15p13	PREDICTED: Rattus norvegicus similar to magnesium-dependent phosphatase-1 (predicted) (RGD1311147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644830-S	ILMN_50977	NTNG2_PREDICTED	XM_242297.4	XM_242297.4		311836	109467961	XM_242297.4	Ntng2_predicted	XP_242297.4	ILMN_1365001	0003130086	S	1696	CCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTA	3	-	8172852-8172901	3p12	PREDICTED: Rattus norvegicus netrin G2 (predicted) (Ntng2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661323-A	ILMN_277123	RNASE12	NM_001012209.1	NM_001012209.1		364302	58865985	NM_001012209.1	Rnase12	NP_001012209.1	ILMN_1376375	0002350136	S	304	AGGATGACAGTTTGTCAGCTCACTGGTGGCTCCAAATACCCTGCCTGCAG	15	-	27035741-27035790	15p14	Rattus norvegicus ribonuclease, RNase A family, 12 (non-active) (Rnase12), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]	Rnase12	Rnase12
Rattus norvegicus	RefSeq	GI_62640874-S	ILMN_288368	RGD1561322_PREDICTED	XM_214988.3	XM_214988.3		293069	62640874	XM_214988.3	RGD1561322_predicted	XP_214988.3	ILMN_1352244	0006660332	S	2892	GCCATTGCAAGTTTCACCCTTGCATACTTCGCCAGAAATCTGCCTGACAC	1	-	141862046-141862095	1q32	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN3) (predicted) (RGD1561322_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657365-S	ILMN_60093	LOC303684	XM_221125.3	XM_221125.3		303684	62657365	XM_221125.3	LOC303684	XP_221125.2	ILMN_1361678	0001170594	S	1077	GAGCTCCTGTGGAGACCAACGTATGGGAGTCATTATCTGCTTTCCTGCCA				10q32.3	PREDICTED: Rattus norvegicus similar to tripartite motif-containing 65 (LOC303684), mRNA.					
Rattus norvegicus	RefSeq	GI_62658271-S	ILMN_59731	LOC363840	XM_344050.2	XM_344050.2		363840	62658271	XM_344050.2	LOC363840	XP_344051.2	ILMN_1364853	0004590142	S	868	CACTGGGGCTCTGTACTTCTGACTGGTGTGGCCGGCAGGTAGAGTCTTAG					PREDICTED: Rattus norvegicus similar to GLE1-like, RNA export mediator isoform 2 (LOC363840), mRNA.					
Rattus norvegicus	RefSeq	GI_13592008-S	ILMN_280581	RPL10A	NM_031065.1	NM_031065.1		81729	13592008	NM_031065.1	Rpl10a	NP_112327.1	ILMN_1373792	0002470725	S	656	GGGCAAGCCCCAGCGTCTGTATTAGGACGCTCCAATAAACCTCGTTGCTG	20	+	6571587-6571611:6571612-6571636	20p12	Rattus norvegicus ribosomal protein L10A (Rpl10a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence TAS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643149-S	ILMN_56473	E2F5	XM_574892.2	XM_574892.2		116651	109464584	XM_574892.2	E2f5	XP_574892.1	ILMN_1351213	0002640494	S	1357	GTCCACCAGCATGCCCCTCCAGTGATTACACTCAGTTTCATTCAGTGCTG	2	-	88346588-88346637	2q23	PREDICTED: Rattus norvegicus E2F transcription factor 5 (E2f5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The cytoplasm of a muscle fiber; includes the sarcoplasmic reticulum [goid 16528] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741550-S	ILMN_299951	MGC105647	XM_001079820.1	XM_001079820.1		361824	109509963	XM_001079820.1	MGC105647	XP_001079820.1	ILMN_1372785	0002340402	S	455	GTGGGCTTGCTCGTAGCCTAACCCCTCACCGACAGTTTGATGGCGAAGAG				20p12	PREDICTED: Rattus norvegicus similar to Nur77 downstream protein 2 (MGC105647), mRNA.					
Rattus norvegicus	RefSeq	GI_62717968-S	ILMN_58391	LOC367438	XM_346139.2	XM_346139.2		367438	62717968	XM_346139.2	LOC367438	XP_346140.2	ILMN_1357136	0005290035	S	425	CCCAGAGCACACCAGGACAATCCTCACCAAACACAAGAGCCTTCTAGGTT					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC367438), mRNA.					
Rattus norvegicus	RefSeq	GI_20302029-S	ILMN_285646	TFPT	NM_138870.1	NM_138870.1		85423	20302029	NM_138870.1	Tfpt	NP_620225.1	ILMN_1352378	0001170736	S	463	GAGGGACTTTCCCCACCACAAAGGACAACTGCAACCCTAGACCCCAGCAG	1	+	63909716-63909765	1q12	Rattus norvegicus TCF3 (E2A) fusion partner (Tfpt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	Amida	Amida
Rattus norvegicus	RefSeq	GI_62666787-S	ILMN_277721	TRAPPC2	NM_001024965.1	NM_001024965.1		501550	68163404	NM_001024965.1	Trappc2	NP_001020136.1	ILMN_1370045	0006520520	S	1238	TACAGGATGCGAGGTGGCAGATGTGGCCTCTTGTCTTAGATATGGTGGTG	X	-	48690543-48690592	Xq21	Rattus norvegicus trafficking protein particle complex 2 (Trappc2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A large complex present on the cis-Golgi that acts prior to SNARE complex assembly to mediate vesicle docking and fusion [goid 30008] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]	MGC109621; Trappc2	MGC109621; Trappc2
Rattus norvegicus	RefSeq	GI_62656781-S	ILMN_68143	LOC360599	XM_340878.2	XM_340878.2		360599	62656781	XM_340878.2	LOC360599	XP_340879.2	ILMN_1357442	0004610750	S	2933	GCCTCACGTAGCAGGCGACAGACTCCTTGCGTTTCAAAACTGCCATTCCC					PREDICTED: Rattus norvegicus similar to Carbonic anhydrase-related protein 10 (Carbonic anhydrase-related protein X) (CARP X) (CA-RP X) (LOC360599), mRNA.					
Rattus norvegicus	RefSeq	GI_62641603-S	ILMN_48693	PTDSS2_PREDICTED	XM_215113.4	XM_215113.4		293620	109459608	XM_215113.4	Ptdss2_predicted	XP_215113.4	ILMN_1357390	0000780408	S	1984	GGAGCCTTCCCTTAACCAGGACTATGAACCGAGGGGTGTGTATGTGGAGG	1	+	201355114-201355163	1q41	PREDICTED: Rattus norvegicus phosphatidylserine synthase 2 (predicted) (Ptdss2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667197-S	ILMN_282884	RGD1562039_PREDICTED	XM_001060576.1	XM_001060576.1		367869	109512219	XM_001060576.1	RGD1562039_predicted	XP_001060576.1	ILMN_1358825	0002120722	S	136	GTTCTGGAAGAAATGCGTACTAAGGTTGCCTCTCCCAAGGCTATTCCACC				Xq31	PREDICTED: Rattus norvegicus similar to MGC82337 protein (predicted) (RGD1562039_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662744-S	ILMN_56604	LOC502088	XM_577525.1	XM_577525.1		502088	62662744	XM_577525.1	LOC502088	XP_577525.1	ILMN_1373710	0002760301	S	518	CAGTCTGGGGTTTCAGATCCATTTGAGCTTCTGCATCTGTCTTGTTCGGG					PREDICTED: Rattus norvegicus similar to cDNA sequence BC023488 (LOC502088), mRNA.					
Rattus norvegicus	RefSeq	GI_62649262-S	ILMN_66032	LOC500506	XM_575868.1	XM_575868.1		500506	62649262	XM_575868.1	LOC500506	XP_575868.1	ILMN_1351960	0001740735	S	0	ACACCATGGGGATGGTGAAGGTCGGTGTGAACGGATTTGGCCGTATCGGA					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC500506), mRNA.					
Rattus norvegicus	RefSeq	GI_62660579-S	ILMN_265889	RGD1562860_PREDICTED	XM_001055920.1	XM_001055920.1		360945	109500673	XM_001055920.1	RGD1562860_predicted	XP_001055920.1	ILMN_1362137	0006130605	S	2964	GCGGCCAGACCTGGCTGGGAGATACTTGGGCGTTAATTGTGTTTGGCGAT				14q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310045A20 (predicted) (RGD1562860_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_23618923-S	ILMN_283350	PARG	NM_031339.1	NM_031339.1		83507	23618923	NM_031339.1	Parg	NP_112629.1	ILMN_1349012	0004850164	S	3837	GTTCTGTGGTGCTTAGAGCATTTCATGTAACCAAAGGTGGGGGCTGGAAG	16	+	7797967-7798016	16p16	Rattus norvegicus poly (ADP-ribose) glycohydrolase (Parg), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The series of events in which a stimulus from a bacterium is received and converted into a molecular signal [goid 16045] [evidence ISS]; The series of events in which a stimulus from a bacterium is received and converted into a molecular signal [goid 16045] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IDA]; Catalysis of the hydrolysis of poly(ADP-ribose) at glycosidic (1''-2') linkage of ribose-ribose bond to produce free ADP-ribose [goid 4649] [evidence IDA]; Catalysis of the hydrolysis of poly(ADP-ribose) at glycosidic (1''-2') linkage of ribose-ribose bond to produce free ADP-ribose [goid 4649] [evidence ISS]; Catalysis of the hydrolysis of poly(ADP-ribose) at glycosidic (1''-2') linkage of ribose-ribose bond to produce free ADP-ribose [goid 4649] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13994174-S	ILMN_284577	FUT2	NM_031635.1	NM_031635.1		58924	13994174	NM_031635.1	Fut2	NP_113823.1	ILMN_1358838	0000840128	S	2552	GCTAAGTTGGTAGTGCTGATCCTGTGCATAAGAAGTAGCCTGGAGTGGCC	1	-	96118912-96118961	1q22	Rattus norvegicus fucosyltransferase 2 (secretor status included) (Fut2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence ISS]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R [goid 8107] [evidence IDA]; Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R [goid 8107] [evidence ISS]; Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R [goid 8107] [evidence IEA]; Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence ISS]; Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R [goid 8107] [evidence IEA]; Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R [goid 8107] [evidence IEA]; Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Futb; Ftc	Futb; Ftc
Rattus norvegicus	RefSeq	GI_62644478-S	ILMN_55265	LOC499720	XM_575052.1	XM_575052.1		499720	62644478	XM_575052.1	LOC499720	XP_575052.1	ILMN_1353385	0003060048	S	5	TGTGAACATTCTACCATCATCAAAGCCTGTGCCTGAAAGAGGGGACCAAG					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC499720), mRNA.					
Rattus norvegicus	RefSeq	GI_62660039-S	ILMN_66252	GLMN	XM_213992.4	XM_213992.4		289437	109499347	XM_213992.4	Glmn	XP_213992.3	ILMN_1369803	0003710333	S	1694	CTGTGACTGTAGGCGGAGAAGAAATCCCCACTATGCCTCCTGAGATGCAG	14	+	2788726-2788775	14p22	PREDICTED: Rattus norvegicus FKBP-associated protein (Glmn), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence [goid 40029] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a muscle cell [goid 42692] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with the hepatocyte growth factor receptor [goid 5171] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655101-S	ILMN_65866	NDUFB3_PREDICTED	XM_217400.4	XM_217400.4		301427	109486129	XM_217400.4	Ndufb3_predicted	XP_217400.1	ILMN_1351415	0004560086	S	183	CAGCTGGAAGGTTGAATATTGAGTGTCCTGGGAGGTCACATTGCTGTCAG	9	+	57252985-57253034	9q31	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 (predicted) (Ndufb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576892-S	ILMN_292661	OLR808	NM_001000850.1	NM_001000850.1		405140	47576892	NM_001000850.1	Olr808	NP_001000850.1	ILMN_1358591	0003130400	S	698	GAAGGAGAAAGGCCTTCCACACGTGTGCCTCCCACCTCACTGTGGTAACA	4	+	70674382-70674431	4q23	Rattus norvegicus olfactory receptor 808 (Olr808), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr808	Olr808
Rattus norvegicus	RefSeq	GI_62666979-S	ILMN_59149	LOC367810	XM_578988.1	XM_578988.1		367810	62666979	XM_578988.1	LOC367810	XP_578988.1	ILMN_1372768	0004780487	S	1689	TTCTTTGTGTGCATCCTGCGCTGGGGAGTGCTGGTGGCCTTCTGTTTAGC				Xq22	PREDICTED: Rattus norvegicus similar to prostaglandin D receptor (LOC367810), mRNA.					
Rattus norvegicus	RefSeq	GI_9507080-S	ILMN_301283	SELL	NM_019177.1	NM_019177.1		29259	9507080	NM_019177.1	Sell	NP_062050.1	ILMN_1349113	0004560301	S	1128	GGTCACTGCATTCTCAGGGCTGGCATTTATCATTTGGCTGGCAAGGCGGC	13	+	79837440-79837489	13q22	Rattus norvegicus selectin, lymphocyte (Sell), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	LECAM-1; L-selectin; A.11	LECAM-1; L-selectin; A.11
Rattus norvegicus	RefSeq	GI_13027413-S	ILMN_288144	GAPDHS	NM_023964.1	NM_023964.1		66020	13027413	NM_023964.1	Gapdhs	NP_076454.1	ILMN_1357427	0005570435	S	1363	GGGCGCACTTCGCGCTGCCGCCGGGTCAACAATGAAATAAAAACCAGAGT	1	-	85773758-85773807	1q21	Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (Gapdhs), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence NAS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cell wall [goid 5199] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	gapdh-2; Gapds	gapdh-2; Gapds
Rattus norvegicus	RefSeq	GI_62646531-S	ILMN_67486	PTK6_PREDICTED	XM_345485.2	XM_345485.2		366275	62646531	XM_345485.2	Ptk6_predicted	XP_345486.1	ILMN_1351774	0005670020	S	1616	AGGTATCACTAGGTATGAGAACCTGGTCTGAGCTCCTCGGCTGTGGCCAG				3q43	PREDICTED: Rattus norvegicus PTK6 protein tyrosine kinase 6 (predicted) (Ptk6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741515-S	ILMN_264377	MGC94720	NM_001006974.1	NM_001006974.1		293738	55741515	NM_001006974.1	MGC94720	NP_001006975.1	ILMN_1353889	0002120253	S	1127	TCCTGGGGCCAGCACACTAACACTGTCACATCAAGATGGGGACTCCAGCC	1	-	213440098-213440147	1q43	Rattus norvegicus similar to hypothetical protein MGC2574 (MGC94720), mRNA.					
Rattus norvegicus	RefSeq	GI_62718736-S	ILMN_57028	LOC501462	XM_576871.1	XM_576871.1		501462	62718736	XM_576871.1	LOC501462	XP_576871.1	ILMN_2039874	0006840608	S	420	GCCCAGAAACTCAGCAAGAAGCCAGCAGCAAAAAGATTTCTCTAGTAGAA					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501462), mRNA.					
Rattus norvegicus	RefSeq	GI_62651108-S	ILMN_294962	LOC688806	XR_006481.1	XR_006481.1		688806	109478558	XR_006481.1	LOC688806		ILMN_1366211	0001500154	S	581	GCCTTGGTCATCACTGACTTCCCCAAACTCGAAGCTATGCAGACTAAGCA	6	+	111750354-111750403	6q31	PREDICTED: Rattus norvegicus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 (LOC688806), mRNA.					
Rattus norvegicus	RefSeq	GI_8393937-S	ILMN_270982	PADI3	NM_017230.1	NM_017230.1		29520	8393937	NM_017230.1	Padi3	NP_058926.1	ILMN_1364686	0002230075	S	3021	ACTGGGAGAAGGGAGGGATGTGGCTGTCTCAGTATGGGTCTTCTGTGAGT	5	-	159641288-159641337	5q36	Rattus norvegicus peptidyl arginine deiminase, type III (Padi3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The hydrolysis of peptidyl-arginine to form peptidyl-citrulline [goid 18101] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase [goid 19546] [evidence NAS]	Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IDA]; Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pdi3	Pdi3
Rattus norvegicus	RefSeq	GI_20302025-S	ILMN_264530	CCDC5	NM_138864.1	NM_138864.1		192228	20302025	NM_138864.1	Ccdc5	NP_620219.1	ILMN_1351409	0003130377	S	3260	CCACGTTAGAGGGGATTACTGGGGGTTACAGTTTGAGTTGGGGTGGATGG	18	-	74716540-74716589	18q12.3	Rattus norvegicus coiled-coil domain containing 5 (Ccdc5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62658452-S	ILMN_50816	LOC304286	XM_239606.3	XM_239606.3		304286	62658452	XM_239606.3	LOC304286	XP_239606.3	ILMN_1357476	0000060113	S	4950	GCCAGCTTCTCCCTCACACACCTCACGGACTCAGACATTGAACAAGGAGG				12p11	PREDICTED: Rattus norvegicus similar to lemur tyrosine kinase 2 (LOC304286), mRNA.					
Rattus norvegicus	RefSeq	GI_62643525-S	ILMN_271682	TIPARP_PREDICTED	XM_001060648.1	XM_001060648.1		310467	109466741	XM_001060648.1	Tiparp_predicted	XP_001060648.1	ILMN_1373383	0006180537	S	3265	GTGCCACTGGCCCAGCAAAAGCACTGTTGGGTGAATGTTCTGTTGCCTCA				2q31	PREDICTED: Rattus norvegicus TCDD-inducible poly(ADP-ribose) polymerase (predicted) (Tiparp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658895-S	ILMN_273351	RGD1561886_PREDICTED	XR_008939.1	XR_008939.1		363918	109497154	XR_008939.1	RGD1561886_predicted		ILMN_1364467	0002690497	S	23	GGAAAGTGGTGCTGGTCCTGGCTGGATGCAAAGCCGTCACCGTAAAGAAC				12q15	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (predicted) (RGD1561886_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651167-S	ILMN_50191	LOC500709	XM_576090.1	XM_576090.1		500709	62651167	XM_576090.1	LOC500709	XP_576090.1	ILMN_1350144	0004610180	S	3244	CTGGAGACCCTAAGGCCAGTGATGTGTATGCCGTCGCTGCAGTTGAGAGG				6q32	PREDICTED: Rattus norvegicus similar to inositol 1,3,4-triphosphate 5/6 kinase (LOC500709), mRNA.					
Rattus norvegicus	RefSeq	GI_62641235-S	ILMN_290800	COG7	NM_001033889.1	NM_001033889.1		293456	76559912	NM_001033889.1	Cog7	NP_001029061.1	ILMN_1368076	0004850369	S	2421	GAGGAGCACCCAGGCAGGGTCAGGACTGGTGTCTCTCAGAATGGATTCAT	1	-	180753716-180753765	1q36	Rattus norvegicus component of oligomeric golgi complex 7 (Cog7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p) [goid 17119] [evidence ISS]; A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p) [goid 17119] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence ISS]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process by which a protein is transported to, or maintained in, a location within an organelle [goid 33365] [evidence IEA]; A process by which a protein is transported to, or maintained in, a location within the Golgi apparatus [goid 34067] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124861	MGC124861
Rattus norvegicus	RefSeq	GI_62647171-S	ILMN_53920	LOC502754	XM_578252.1	XM_578252.1		502754	62647171	XM_578252.1	LOC502754	XP_578252.1	ILMN_1356613	0002680138	S	0	ATGTCAAAGCAAATCCACCCTCCTCCTACAGAGGCAGAGTTTTCCCTCCT					PREDICTED: Rattus norvegicus similar to Trypsin II, anionic precursor (Pretrypsinogen II) (LOC502754), mRNA.					
Rattus norvegicus	RefSeq	GI_47777721-S	ILMN_264286	OLR219	NM_001001372.1	NM_001001372.1		293365	47777721	NM_001001372.1	Olr219	NP_001001372.1	ILMN_1349154	0002850152	S	872	GCCTGAGAAACAAGGATGTCAAGGGGGCTCTCAGGAGGATAACTTTAAGA	1	-	164120138-164120187	1q33	Rattus norvegicus olfactory receptor 219 (Olr219), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr219	Olr219
Rattus norvegicus	RefSeq	GI_62650028	ILMN_59990	LOC366504	XM_345603.2	XM_345603.2		366504	62650028	XM_345603.2	LOC366504	XP_345604.2	ILMN_1650257	0002370408	S	2263	CGAAGACGGTCAGCATCAGCACGGGTGACACTACAGGGACATGGAGGGAA					PREDICTED: Rattus norvegicus similar to MGC31683 protein (predicted) (LOC366504), mRNA.					
Rattus norvegicus	RefSeq	GI_62645361-S	ILMN_299217	RGD1311224_PREDICTED	XR_008714.1	XR_008714.1		295714	109470198	XR_008714.1	RGD1311224_predicted		ILMN_1373571	0001230411	S	1800	CTGGCAAAAGTGGCATACATGAGTGTCCCAGGAATGTGAGTCCCAAGGAC				3q24	PREDICTED: Rattus norvegicus similar to fatty acid desaturase 2; linoleoyl-CoA desaturase (delta-6-desaturase)-like 2; delta-6 fatty acid desaturase (predicted) (RGD1311224_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661153-S	ILMN_268364	LOC498460	XM_573718.1	XM_573718.1		498460	62661153	XM_573718.1	LOC498460	XP_573718.1	ILMN_1361305	0003520193	S	276	TGGATCAACACCTTCCACCGTGACGCAAGCCTGGTGCCAGCTCTTCCTCT	15	-	18712792-18712841	15p14	PREDICTED: Rattus norvegicus LRRGT00055 (LOC498460), mRNA.					
Rattus norvegicus	RefSeq	GI_47577372-S	ILMN_298623	OLR704	NM_001000626.1	NM_001000626.1		404818	47577372	NM_001000626.1	Olr704	NP_001000626.1	ILMN_1365526	0005130204	S	423	CCTATTGGTGGTTTCCTGGGCTGGAGGCCTTACCCACTCTGTAGCTCAAC	3	-	73900611-73900660	3q24	Rattus norvegicus olfactory receptor 704 (Olr704), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr704	Olr704
Rattus norvegicus	RefSeq	GI_16758453-S	ILMN_299563	CDS2	NM_053643.1	NM_053643.1		114101	16758453	NM_053643.1	Cds2	NP_446095.1	ILMN_1357772	0001580138	S	1409	TAGTCTACCCAGGGCCAGGAGAGCCAGAATAGGACTAGAGTGAGGGGCAG	3	+	120063885-120063890:120063891-120063934	3q36	Rattus norvegicus CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 (Cds2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Catalysis of the reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol [goid 4605] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663215-S	ILMN_69538	LMAN2_PREDICTED	XM_214428.3	XM_214428.3		290994	62663215	XM_214428.3	Lman2_predicted	XP_214428.1	ILMN_1366666	0000050121	S	1105	ACAAGCGTTTCTACTGAGAGAGGCCGGTTTGGCTGGGAAGGGCCTGACCT					PREDICTED: Rattus norvegicus lectin, mannose-binding 2 (predicted) (Lman2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758559-S	ILMN_271362	WIF1	NM_053738.1	NM_053738.1		114557	16758559	NM_053738.1	Wif1	NP_446190.1	ILMN_1364986	0006110687	S	1725	GTGGTATTGGGATGGGGAGCCCTAGAGAGGCGAAACTGGGCAAAGATACA	7	+	60400267-60400316	7q22	Rattus norvegicus Wnt inhibitory factor 1 (Wif1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645136-S	ILMN_272786	BAZ2B_PREDICTED	XM_001058884.1	XM_001058884.1		317627	109469902	XM_001058884.1	Baz2b_predicted	XP_001058884.1	ILMN_1364811	0003610731	S	8258	GGCGTCTCCCGAATCTTGGTAGTGCCTGCCTTTGAAACAGGGTGTAGGGG				3q21	PREDICTED: Rattus norvegicus bromodomain adjacent to zinc finger domain, 2B (predicted) (Baz2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577756-S	ILMN_268771	OLR1250	NM_001000806.1	NM_001000806.1		405092	47577756	NM_001000806.1	Olr1250	NP_001000806.1	ILMN_1356993	0005670408	S	39	TCTCTTAGGGATAACAGACCAACCTGAGCTCCAAATACCACTGTTCCTAC	8	+	40743455-40743504	8q22	Rattus norvegicus olfactory receptor 1250 (Olr1250), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1250	Olr1250
Rattus norvegicus	RefSeq	GI_32140187-S	ILMN_266252	ADAM28	NM_181693.1	NM_181693.1		290344	32140187	NM_181693.1	Adam28	NP_859044.1	ILMN_1360745	0000450021	S	2121	GGAGAGTTCAGAGGCTACCACCCATCAAGGATGCCAAGCTACACAAGCAG	15	-	49023962-49023999:49032290-49032301	15p11	Rattus norvegicus ADAM metallopeptidase domain 28 (Adam28), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648881-S	ILMN_269703	RGD1310376_PREDICTED	XM_001063105.1	XM_001063105.1		298404	109476323	XM_001063105.1	RGD1310376_predicted	XP_001063105.1	ILMN_1357577	0006100494	S	1498	CAGTAGCCAGGTACGGCAGCACACACCTATACACCCAACACCTGAGAGGC				5q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14642 (predicted) (RGD1310376_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648882-S	ILMN_269703	RGD1310376_PREDICTED	XM_001063105.1	XM_001063105.1		298404	109476323	XM_001063105.1	RGD1310376_predicted	XP_001063105.1	ILMN_1363293	0004060022	S	693	GGACGCAAGGCAAAAGGGCTTACTTCAGGACGCTGGTTCCTACGACAGGG				5q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14642 (predicted) (RGD1310376_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705518-S	ILMN_290633	P34	NM_134398.1	NM_134398.1		171435	19705518	NM_134398.1	P34	NP_599225.1	ILMN_1365755	0006860068	S	782	TAGCCAGTCTTACCACTGGAGGAGGGGATCTGGAGAACTTTGAGAGACTC	8	+	67812823-67812872	8q24	Rattus norvegicus p34 protein (P34), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62640904-S	ILMN_279074	PCF11_PREDICTED	XM_001062815.1	XM_001062815.1		361605	109462423	XM_001062815.1	Pcf11_predicted	XP_001062815.1	ILMN_1351668	0006520600	S	5666	GCCTGCACAGTTTCAGGTGCTTGTTGTGTGAAAGTTCTGTAGATGAGTGC				1q32	PREDICTED: Rattus norvegicus cleavage and polyadenylation factor subunit homolog (S. cerevisiae) (predicted) (Pcf11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31442873-S	ILMN_265147	GSTK1	NM_181371.2	NM_181371.2		297029	31442873	NM_181371.2	Gstk1	NP_852036.1	ILMN_1355860	0006370100	S	765	TCTGTGGCCCTGGGGGTTGAAACAAGAGTCCACCTTTAGCTGTGGCTGCC	4	+	70003954-70004003	4q23	Rattus norvegicus glutathione S-transferase kappa 1 (Gstk1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence TAS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin cell wall [goid 30288] [evidence IEA]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IEA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	GSTkappa; GST13-13	GSTkappa; GST13-13
Rattus norvegicus	RefSeq	GI_62654582-S	ILMN_288444	PDCD6IP	XM_001076624.1	XM_001076624.1		501083	109485521	XM_001076624.1	Pdcd6ip	XP_001076624.1	ILMN_1360665	0002940541	S	2040	GTCTCACACCAGGAATTCTCCAAAATGAAGCAGTCTAACAGTGAGGCCAG					PREDICTED: Rattus norvegicus programmed cell death 6 interacting protein (Pdcd6ip), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IPI]; A cascade of processes initiated by the detection of DNA damage and resulting in the induction of apoptosis (programmed cell death) [goid 8630] [evidence IPI]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34932825-S	ILMN_52493	LOC313303	XM_233106.2	XM_233106.2		313303	34932825	XM_233106.2	LOC313303	XP_233106.2	ILMN_1356767	0006650097	S	1203	CCAGCCCCTGTGTGGGAGAGCTGGAGCCAAGCTGTTAGAGAAAGCCCAAA					PREDICTED: Rattus norvegicus similar to testis expressed sequence 13B (LOC313303), mRNA.					
Rattus norvegicus	RefSeq	GI_62641664-S	ILMN_267794	CARS_PREDICTED	XM_001065753.1	XM_001065753.1		293638	109463259	XM_001065753.1	Cars_predicted	XP_001065753.1	ILMN_1372842	0006840347	S	2933	ACTCAGCCCAACGGATCCCCCTGAGCCCCAGACAAAAGCCACTCAGTTGT				1q41	PREDICTED: Rattus norvegicus cysteinyl-tRNA synthetase (predicted) (Cars_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948375-S	ILMN_275318	CCL6	NM_001004202.1	NM_001004202.1		287910	51948375	NM_001004202.1	Ccl6	NP_001004202.1	ILMN_1369168	0003940497	S	1298	ACCCCGAAAACTCCTACCCACACTCCAAGGTTCATGTATAGGCCTGGTTC	10	-	71659655-71659704	10q26	Rattus norvegicus chemokine (C-C motif) ligand 6 (Ccl6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657882-S	ILMN_302448	GTPBP8	NM_001025015.1	NM_001025015.1		360714	68163468	NM_001025015.1	Gtpbp8	NP_001020186.1	ILMN_1358146	0004010601	S	761	CGCAGACACAAGGCTGTTTTCCTCAGCTGTTCCCTATAAGCGCAGTAACC	11	+	57491140-57491179:57494007-57494016	11q21	Rattus norvegicus GTP-binding protein 8 (putative) (Gtpbp8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC108988; RGD1310025	MGC108988; RGD1310025
Rattus norvegicus	RefSeq	GI_62647563-S	ILMN_49596	LOC502818	XR_000313.1	XR_000313.1		502818	62647563	XR_000313.1	LOC502818		ILMN_1353677	0002100324	S	151	GCTGGGCCATCCAGAGTATTGGCACTAGCATACACTGGCAGTTCAGTGCA				4q31	PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC502818), mRNA.					
Rattus norvegicus	RefSeq	GI_31543037-S	ILMN_290533	KCNMB4	NM_023960.2	NM_023960.2		66016	31543037	NM_023960.2	Kcnmb4	NP_076450.1	ILMN_1374224	0002760088	S	642	GTTCTCTTAACGGGGAGGAGGATTGTGGGAAGCCAAGACCAGAGGCTGCC	7	-	55751907-55751956	7q22	Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M, beta member 4 (Kcnmb4), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal [goid 5513] [evidence ISS]; The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal [goid 5513] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663809-S	ILMN_69973	LOC364779	XM_574077.1	XM_574077.1		364779	62663809	XM_574077.1	LOC364779	XP_574077.1	ILMN_1367790	0000450253	S	2448	ACCTCAGAGCCTCATGCCCGTGCTTTAATGGCTCAATGTCGAAGAGGAGG				17q12.3	PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC364779), mRNA.					
Rattus norvegicus	RefSeq	GI_62639116-S	ILMN_272136	LOC686871	XM_001076127.1	XM_001076127.1		686871	109461388	XM_001076127.1	LOC686871	XP_001076127.1	ILMN_1359423	0003120008	S	1081	AATGACACACCCCTCATGGTGGCGCGCAGCCGCAGGGTCATTGATATCCT					PREDICTED: Rattus norvegicus similar to B-cell leukemia/lymphoma 3 (LOC686871), mRNA.					
Rattus norvegicus	RefSeq	GI_62640386-S	ILMN_70008	LOC499165	XM_574462.1	XM_574462.1		499165	62640386	XM_574462.1	LOC499165	XP_574462.1	ILMN_1354688	0006220537	S	922	GGGTGGAATGCTACGCAAGCTAAAGGACCCCACTCTGTATTCTGGGACAA					PREDICTED: Rattus norvegicus similar to hypothetical protein C230069C04 (LOC499165), mRNA.					
Rattus norvegicus	RefSeq	GI_62649645-S	ILMN_268467	EIF2C1_PREDICTED	XM_001058138.1	XM_001058138.1		313594	109477242	XM_001058138.1	Eif2c1_predicted	XP_001058138.1	ILMN_1375162	0006550593	S	5495	TTGCAGATGCCCGTGGGGAACAGGTGGCTGTCACAACTCCCAGCAACAAG				5q36	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 2C, 1 (predicted) (Eif2c1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11120703-S	ILMN_287935	NOL5	NM_021754.1	NM_021754.1		60373	11120703	NM_021754.1	Nol5	NP_068522.1	ILMN_1374672	0005220632	S	1585	GGAGATGGAGGAGGCGGAGGAAGAACAGGTAGTAGAAGAGGAGCCGACTG	9	+	58278452-58278501	9q31	Rattus norvegicus nucleolar protein 5 (Nol5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A complex composed of RNA of the small nucleolar RNA (snoRNA) and protein, found in the nucleolus of a eukaryotic cell. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type [goid 5732] [evidence IDA]	The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically [goid 154] [evidence NAS]; The directed movement of a small nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane [goid 6608] [evidence IDA]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule [goid 8649] [evidence NAS]; Interacting selectively with a protein constituent of a small nucleolar ribonucleoprotein particle [goid 30519] [evidence TAS]; Interacting selectively with an unfolded protein [goid 51082] [evidence TAS]	Nap65; MGC105440	Nap65; MGC105440
Rattus norvegicus	RefSeq	GI_62646793-S	ILMN_275668	RGD1310794	NM_001024246.1	NM_001024246.1		296840	66730432	NM_001024246.1	RGD1310794	NP_001019417.1	ILMN_1365923	0003850717	S	871	CCTAGGACAACACAGCTGCAGGAGAGGAAAAGACGGCGAGACTGTGATCG	4	+	27279486-27279535	4q13	Rattus norvegicus similar to RIKEN cDNA C030048B08 (RGD1310794), mRNA.				MGC112752	MGC112752
Rattus norvegicus	RefSeq	GI_62666388-S	ILMN_49637	LOC502486	XM_577967.1	XM_577967.1		502486	62666388	XM_577967.1	LOC502486	XP_577967.1	ILMN_1369484	0003610575	S	1679	ATCTCAGCTACCACAAAGGGCACAGACTGAAGGACAAGGCCAAGAACAGG					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502486), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647517-S	ILMN_70374	LOC502794	XM_578293.1	XM_578293.1		502794	62647517	XM_578293.1	LOC502794	XP_578293.1	ILMN_1367079	0006290082	S	240	GGGGTCCCAGACAGGTTCATTGGCAGAACCACTGGGGATATTGTGATGAC					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC502794), mRNA.					
Rattus norvegicus	RefSeq	GI_62641738-S	ILMN_277120	DRAP1_PREDICTED	XM_001073347.1	XM_001073347.1		293674	109463375	XM_001073347.1	Drap1_predicted	XP_001073347.1	ILMN_1361530	0000430148	S	1095	GGGAGTCTGACAGGAGTCTGGGGCACTGAAGAAAGGAATGTGGTCTAGGG				1q43	PREDICTED: Rattus norvegicus Dr1 associated protein 1 (negative cofactor 2 alpha) (predicted) (Drap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660189-S	ILMN_289467	CNOT6L_PREDICTED	XM_001062857.1	XM_001062857.1		360917	109500291	XM_001062857.1	Cnot6l_predicted	XP_001062857.1	ILMN_1374682	0006760324	S	2997	GGCCAGGAGGTGCCACTTGAAAATCTTAAGAGGCAGAGAGCATGAACACC				14p22	PREDICTED: Rattus norvegicus CCR4-NOT transcription complex, subunit 6-like (predicted) (Cnot6l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_26892288-S	ILMN_272218	PPIF	NM_172243.1	NM_172243.1		282819	26892288	NM_172243.1	Ppif	NP_758443.1	ILMN_1367133	0006220471	S	854	CCTTAGCAAGTGTCTCGGTGATTGCCATTGTGTGTGCCTTGGACATCGGC	16	+	1298925-1298974	16p16	Rattus norvegicus peptidylprolyl isomerase F (cyclophilin F) (Ppif), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IDA]; Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with cyclosporin A, a cyclic undecapeptide that contains several N-methylated and unusual amino acids [goid 16018] [evidence IDA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IEA]	MGC93084; PPIase	MGC93084; PPIase
Rattus norvegicus	RefSeq	GI_62644185-S	ILMN_266416	CELSR2	XM_001076220.1	XM_001076220.1		83465	109465378	XM_001076220.1	Celsr2	XP_001076220.1	ILMN_1375074	0005890577	S	10123	CACTGACTTCCCCTTTAGAGCAGGTGGTAGAGTGAAGGCTCTCAGCAGGA	2	-	203959374-203959423	2q34	PREDICTED: Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 2 (Celsr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The process that regulates the coordinated growth and differentiation that establishes the non-random anterior-posterior spatial arrangement of the neural plate [goid 21999] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell [goid 22407] [evidence IMP]; Any process that modulates the DNA-dependent transcription of a specific gene or genes [goid 32583] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978812-S	ILMN_286942	EPHX1	NM_001034090.1	NM_001034090.1		25315	77539441	NM_001034090.1	Ephx1	NP_001029262.1	ILMN_1351186	0001240091	S	1345	GGTCAAGTACCCCAAACTCATCTCCTATTCCTACATGGAACGTGGGGGCC	13	-	96723265-96723314	13q26	Rattus norvegicus epoxide hydrolase 1, microsomal (Ephx1), transcript variant 1, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence TAS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence ISS]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring [goid 19439] [evidence IEA]	Catalysis of the reaction: an epoxide + H2O = a glycol [goid 4301] [evidence TAS]; Catalysis of the reaction: an epoxide + H2O = a glycol [goid 4301] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: cis-stilbene oxide + H2O = (+)-(1R,2R)-1,2-diphenylethane-1,2-diol [goid 33961] [evidence IEA]	MEH8	MEH8
Rattus norvegicus	RefSeq	GI_62656422-S	ILMN_65705	LOC501692	XM_577093.1	XM_577093.1		501692	62656422	XM_577093.1	LOC501692	XP_577093.1	ILMN_1368653	0003360592	S	606	TGGAAACCCGGTGTGCTTCTGATCTCCTGGGAAGAATGTCCCGGCCACAC				10q22	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC501692), mRNA.					
Rattus norvegicus	RefSeq	GI_62645676-S	ILMN_285842	RGD1561554_PREDICTED	XM_001076895.1	XM_001076895.1		311362	109470522	XM_001076895.1	RGD1561554_predicted	XP_001076895.1	ILMN_1366300	0004590451	S	2334	GTGTCACCCAGTAGATGGGACACTAGCTGAAGACTCGGACCGTTGTCCTC				3q35	PREDICTED: Rattus norvegicus similar to MGC14161 protein (predicted) (RGD1561554_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652627-S	ILMN_262364	RGD1311188_PREDICTED	XM_001074596.1	XM_001074596.1		315088	109482450	XM_001074596.1	RGD1311188_predicted	XP_001074596.1	ILMN_1363097	0002510725	S	1085	TCTATGAGTGCGAAGAGTGCGGGAAGGGCTTCCGCCACCTGGGCTTTTTC				7q34	PREDICTED: Rattus norvegicus similar to 1500031N24Rik protein (predicted) (RGD1311188_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644939-S	ILMN_56649	LOC499779	XM_575112.2	XM_575112.2		499779	109468043	XM_575112.2	LOC499779	XP_575112.2	ILMN_1362448	0003120064	S	521	TGCAGTCCACAGGGACAGGAGGATGAAGGCATAGAGGCAGAGAGCCCAGA	3	-	11402915-11402964	3p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900010J23 (LOC499779), mRNA.					
Rattus norvegicus	RefSeq	GI_62665706-S	ILMN_62266	LOC499407	XM_574723.1	XM_574723.1		499407	62665706	XM_574723.1	LOC499407	XP_574723.1	ILMN_1357351	0006510403	S	2322	GCGCAGGCCTTTAATGCAGCACTGCAGAGGCAGGTGAATGACCCTGTCAC					PREDICTED: Rattus norvegicus similar to LRRGT00097 (LOC499407), mRNA.					
Rattus norvegicus	RefSeq	GI_62645445-S	ILMN_273439	LOC499843	XM_001079208.1	XM_001079208.1		499843	109470377	XM_001079208.1	LOC499843	XP_001079208.1	ILMN_1356040	0006110025	S	259	GTCCACTCTGTTATTTTGAGACAGTATCTCTCTCTGGCCTGGAGCACGTC				3q31	PREDICTED: Rattus norvegicus LRRGT00091 (LOC499843), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62666595-S	ILMN_263879	RGD1564596_PREDICTED	XM_001063416.1	XM_001063416.1		302554	109511578	XM_001063416.1	RGD1564596_predicted	XP_001063416.1	ILMN_1365655	0004070048	S	665	CTGGGGACTTGTCTAGGGCATGAGTTCTCTGAGACTTTTGGAGGTCTGGG				Xq13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010001H14 (predicted) (RGD1564596_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660191-S	ILMN_281306	CXCL13	NM_001017496.1	NM_001017496.1		498335	62945343	NM_001017496.1	Cxcl13	NP_001017496.1	ILMN_1356758	0000060008	S	759	AGGTCCCTAAGAAGCAGACGCATTACCAGCCTAAGGTGATGCAGAGCAGG	14	-	15126612-15126661	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 13 (Cxcl13), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644401	ILMN_51336	LOC499710	XM_575038.1	XM_575038.1		499710	62644401	XM_575038.1	LOC499710	XP_575038.1	ILMN_1649974	0004280278	S	490	CGACAGACGTGGAACCGGCTGTGCAAGTCATCGGAGAGGTATTCTTGCAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130221D24 (LOC499710), mRNA.					
Rattus norvegicus	RefSeq	GI_47577710-S	ILMN_277347	OLR582	NM_001000662.1	NM_001000662.1		404862	47577710	NM_001000662.1	Olr582	NP_001000662.1	ILMN_1372328	0000360576	S	372	GGCCATCAGTACACCCCTGTTGTATGCTGTGGACATGTCTAACAGAGTTT	3	+	71458075-71458124	3q24	Rattus norvegicus olfactory receptor 582 (Olr582), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr582	Olr582
Rattus norvegicus	RefSeq	GI_62639246-S	ILMN_285335	LRFN1_PREDICTED	XM_001073781.1	XM_001073781.1		365222	109461547	XM_001073781.1	Lrfn1_predicted	XP_001073781.1	ILMN_1374174	0003520593	S	1353	CCGCATGTACCAAGTGCAATACAACAGCTCTGCGGATGACTCCCTAGTCT				1q21	PREDICTED: Rattus norvegicus leucine rich repeat and fibronectin type III domain containing 1 (predicted) (Lrfn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861640-S	ILMN_65408	LOC365982	XM_345316.1	XM_345316.1		365982	34861640	XM_345316.1	LOC365982	XP_345317.1	ILMN_1368108	0002940309	S	713	GACTGGGTTCAGAGAAGGTGGCAGAGGTCACAGCAGTCTCGGGCATTGTG					PREDICTED: Rattus norvegicus similar to axonemal dynein heavy chain 5 (LOC365982), mRNA.					
Rattus norvegicus	RefSeq	GI_62666252-S	ILMN_65198	LOC502474	XM_577953.1	XM_577953.1		502474	62666252	XM_577953.1	LOC502474	XP_577953.1	ILMN_1354879	0007100487	S	993	GGCCCTGTATATCTGGAAGGTGCAGGCGGTCCTTACTATATTCTCCAGCT					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502474), mRNA.					
Rattus norvegicus	RefSeq	GI_62649504-S	ILMN_290377	LOC684069	XM_001068777.1	XM_001068777.1		684069	109477017	XM_001068777.1	LOC684069	XP_001068777.1	ILMN_1355931	0002640100	S	484	GTGATGTTGGAGTGCCATTCAAGAGGTTGGTTCCCAGAGCCTCACATGGA					PREDICTED: Rattus norvegicus similar to Butyrophilin subfamily 1 member A1 precursor (BT) (LOC684069), mRNA.					
Rattus norvegicus	RefSeq	GI_13928739-S	ILMN_268122	RGN	NM_031546.1	NM_031546.1		25106	13928739	NM_031546.1	Rgn	NP_113734.1	ILMN_1372884	0003840592	S	1526	CAAACACTGGAGCACAAACTGTGGTTTTAACTGCCACCTAGTGGCTATAC	X	-	13037195-13037244	Xq12	Rattus norvegicus regucalcin (senescence marker protein-30) (Rgn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; Any process that activates or increases the rate of ATP hydrolysis by an ATPase [goid 32781] [evidence IDA]; Any process that modulates the frequency, rate or extent of calcium-mediated signaling, the process by which a cell uses calcium ions to convert an extracellular signal into a response [goid 50848] [evidence IDA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Modulates the activity of an enzyme [goid 30234] [evidence IEA]	Rc; Reguc	Rc; Reguc
Rattus norvegicus	RefSeq	GI_6981355-S	ILMN_300195	PHEX	NM_013004.1	NM_013004.1		25512	6981355	NM_013004.1	Phex	NP_037136.1	ILMN_1353892	0001570400	S	4092	CCCCCCATTACATAATTCATTATACATGGGGTGCTGGGTTAAGTGGGCCA	X	+	59168712-59168761	Xq21	Rattus norvegicus phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets) (Phex), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IEP]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	PEX	PEX
Rattus norvegicus	RefSeq	GI_62643742-S	ILMN_272469	TMEM79	NM_001033896.1	NM_001033896.1		310626	76559922	NM_001033896.1	Tmem79	NP_001029068.1	ILMN_1365853	0002340040	S	1175	GGCTGATATACTGGCTGACCTTTGCTGTGGGCCGCTCCTTCCGAGGCTTT	2	-	180442901-180442950	2q34	Rattus norvegicus transmembrane protein 79 (Tmem79), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124716	MGC124716
Rattus norvegicus	RefSeq	GI_56090332-S	ILMN_288462	CEPT1	NM_001007699.1	NM_001007699.1		310773	56090332	NM_001007699.1	Cept1	NP_001007700.1	ILMN_1367829	0003290504	S	2014	CGATCAAGAAATGGTGTTTCTCACGGGCTTGGGAAATCTCGCTAGCATGC	2	-	201801979-201802028	2q34	Rattus norvegicus choline/ethanolamine phosphotransferase 1 (Cept1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: CDP-choline + 1,2-diacylglycerol = CMP + a phosphatidylcholine [goid 4142] [evidence IEA]; Catalysis of the reaction: CDP-ethanolamine + 1,2-diacylglycerol = CMP + a phosphatidylethanolamine [goid 4307] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor) [goid 16780] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	MGC95031	MGC95031
Rattus norvegicus	RefSeq	GI_62664072-S	ILMN_263537	SS18	XM_001073112.1	XM_001073112.1		361295	109506969	XM_001073112.1	Ss18	XP_001073112.1	ILMN_1364660	0005390026	S	3202	GGTCAGTAGAAATAGGCATCGAGTGTGACCAGGCGAGGTGTGGAAAGCCT				18p13	PREDICTED: Rattus norvegicus synovial sarcoma translocation, Chromosome 18 (Ss18), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_57164086	ILMN_274207	V1RF1	NM_001009506.1	NM_001009506.1		494225	57164086	NM_001009506.1	V1rf1	NP_001009506.1	ILMN_1650248	0000780133	S	576	GGGACTCTTGGTCTGGGCCAGCATATCTACTGTTCTCATCTTGCACAGGC	1	+	58822648-58822697	1q12	Rattus norvegicus vomeronasal 1 receptor, F1 (V1rf1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646038-S	ILMN_65318	LOC499915	XM_580032.1	XM_580032.1		499915	62646038	XM_580032.1	LOC499915	XP_580032.1	ILMN_1363703	0004590687	S	690	CACAGCGTGTGCCTCACCTTTCATGCAGTCAGACACCCCGAGACAAAGTG					PREDICTED: Rattus norvegicus LOC499915 (LOC499915), mRNA.					
Rattus norvegicus	RefSeq	GI_62663265-I	ILMN_51573	SFXN1_PREDICTED	XM_573990.1	XM_573990.1		364678	62663265	XM_573990.1	Sfxn1_predicted	XP_573990.1	ILMN_1375928	0004480079	S	2371	CGGCCCAGTTAGTGAGAAACGCGCAGTAGACATGGAGCTGGGCTCTTTTG				17p14	PREDICTED: Rattus norvegicus sideroflexin 1 (predicted) (Sfxn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647241-S	ILMN_57478	DFNA5H	XM_231759.4	XM_231759.4		353316	109472038	XM_231759.4	Dfna5h	XP_231759.4	ILMN_1371764	0000940121	S	2209	CAGACCCAATGCCCCTGGGCACATCAAGCAGTGGGATGAATGTTAGCTCC	4	-	78431995-78432044	4q24	PREDICTED: Rattus norvegicus deafness, autosomal dominant 5 homolog (human) (Dfna5h), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence IEA]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62647243-S	ILMN_57478	DFNA5H	XM_231759.4	XM_231759.4		353316	109472038	XM_231759.4	Dfna5h	XP_231759.4	ILMN_1358020	0004850142	S	351	GGCCTGGTGGAGAGTCAGTCTTCGTTTGGAACTCTGAGGAAGCAGGAGGT	4	-	78476698-78476747	4q24	PREDICTED: Rattus norvegicus deafness, autosomal dominant 5 homolog (human) (Dfna5h), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence IEA]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62655829-S	ILMN_56772	PKD1	XM_340765.2	XM_340765.2		24650	62655829	XM_340765.2	Pkd1	XP_340766.2	ILMN_1354053	0007040286	S	13860	AGGCGCTGGACAGCAATTGGGGCCACCATGGCCTTGTTTCCCTCCCTTGT					PREDICTED: Rattus norvegicus polycystic kidney disease 1 homolog (Pkd1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IEA]; The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal [goid 50982] [evidence IEA]; The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal [goid 50982] [evidence ISS]; The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal [goid 50982] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758641-S	ILMN_282255	DARS	NM_053799.1	NM_053799.1		116483	16758641	NM_053799.1	Dars	NP_446251.1	ILMN_1365101	0006040047	S	1572	CATAATGTACGTCAGACCTCAATGTTCCCTCGTGACCCGAAGCGACTCAC	13	-	41077401-41077450	13q12	Rattus norvegicus aspartyl-tRNA synthetase (Dars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A multienzyme complex found in all multicellular eukaryotes composed of eight proteins with aminoacyl-tRNA synthetase activities (abbreviated as: ArgRS, AspRS, GluProRS, GlnRS, IleRS, LeuRS, LysRS, MetRS where RS is the enzyme, preceded by the amino acid it uses as a substrate) as well as three non-synthetase proteins (p43, p38, and p18) with diverse functions. Several of these subunits are known dimers, so the total polypeptide count in the multisynthetase complex is at least fifteen. All of the enzymes in this assembly catalyze the same reaction, the covalent attachment of an amino acid to either the 2'- or 3'-hydroxyl of the 3'-terminal adenosine of tRNA, but using different substrates [goid 17101] [evidence TAS]	The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6422] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp) [goid 4815] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	DRS1	DRS1
Rattus norvegicus	RefSeq	GI_62652625-S	ILMN_55656	RGD1562665_PREDICTED	XM_343264.3	XM_343264.3		362936	109480921	XM_343264.3	RGD1562665_predicted	XP_343265.3	ILMN_1358336	0004010438	S	1092	GTGCGAACTGTGTGGGAGGGGCTTCAACCACCTGGGCTATTTAACAAGGC	7	+	113974112-113974161	7q34	PREDICTED: Rattus norvegicus similar to 1500031N24Rik protein (predicted) (RGD1562665_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643541-S	ILMN_272154	MFSD1_PREDICTED	XM_001061503.1	XM_001061503.1		361957	109466747	XM_001061503.1	Mfsd1_predicted	XP_001061503.1	ILMN_1363845	0002570364	S	1052	ACCCGTGGATTGCCATGTGTCTGCTGGGGTTCTCCTACTCATTGCTGGCC				2q31	PREDICTED: Rattus norvegicus major facilitator superfamily domain containing 1 (predicted), transcript variant 1 (Mfsd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663488-S	ILMN_57971	LOC498740	XM_574018.1	XM_574018.1		498740	62663488	XM_574018.1	LOC498740	XP_574018.1	ILMN_1357377	0004590164	S	1837	CTGCATCGATGCTTCCTTTGAAGTGTTTTGGGCCACAAGAAGTAAGACTG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498740), mRNA.					
Rattus norvegicus	RefSeq	GI_47577094-S	ILMN_289094	OLR767	NM_001000611.1	NM_001000611.1		404800	47577094	NM_001000611.1	Olr767	NP_001000611.1	ILMN_1353709	0002690592	S	693	TGGAGCATCTAAGGCTCTGTCCACTTGCAGTGCTCATATCACCGTAGTGC	3	-	97151635-97151684	3q34	Rattus norvegicus olfactory receptor 767 (Olr767), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr767	Olr767
Rattus norvegicus	RefSeq	GI_62642652-S	ILMN_54520	RGD1306062_PREDICTED	XM_226606.4	XM_226606.4		294595	109464190	XM_226606.4	RGD1306062_predicted	XP_226606.4	ILMN_1356505	0005570066	S	4099	CAAGTTCAGTGTACATCACTCCTGGCGTCACAGAAACCCCTCCCAGATGC	2	+	3296528-3296577	2q11	PREDICTED: Rattus norvegicus similar to KIAA0372 gene product (predicted) (RGD1306062_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605713-S	ILMN_281015	RGD1311578	NM_001008318.1	NM_001008318.1		298748	56605713	NM_001008318.1	RGD1311578	NP_001008319.1	ILMN_1359207	0000360524	S	2234	AGCCGAGCGTGGCCTTAACCTTCTGTGTCTTCGTCTGTGAGAGGGACCAG	6	+	1726988-1727037	6q11	Rattus norvegicus similar to PRO1853 homolog (RGD1311578), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]			MGC94867	MGC94867
Rattus norvegicus	RefSeq	GI_14091763-S	ILMN_277704	IRS3	NM_032074.1	NM_032074.1		84021	14091763	NM_032074.1	Irs3	NP_114463.1	ILMN_1358930	0000360037	S	1827	GTCTCTTCCAGCTGTACCGCCTCAGAAACACCTCAGGAAGAAGTGCTCCA	12	-	19709233-19709282	12q12	Rattus norvegicus insulin receptor substrate 3 (Irs3), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with the insulin receptor [goid 5158] [evidence TAS]; Interacting selectively with the insulin receptor [goid 5158] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577924-S	ILMN_262675	OLR113	NM_001000151.1	NM_001000151.1		293251	47577924	NM_001000151.1	Olr113	NP_001000151.1	ILMN_1354553	0001570035	S	237	CGTGCACACGGTGCTGGGAATCCTTTGGGGCTTGATTCAAGAAATCAGCC	1	-	161340896-161340945	1q32	Rattus norvegicus olfactory receptor 113 (Olr113), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr113	Olr113
Rattus norvegicus	RefSeq	GI_34876706-S	ILMN_265740	CSNG	XM_001074092.1	XM_001074092.1		114595	109500435	XM_001074092.1	Csng	XP_001074092.1	ILMN_1367349	0000870451	S	535	TGGGCCCCCAGTAAGGACTACACCTTCCCAACTGCTCGCTACATGGCTTG				14p21	PREDICTED: Rattus norvegicus casein gamma (Csng), mRNA.					
Rattus norvegicus	RefSeq	GI_62647497-S	ILMN_291686	RGD1565690_PREDICTED	XR_008204.1	XR_008204.1		502784	109473597	XR_008204.1	RGD1565690_predicted		ILMN_1374662	0005570672	S	2251	AGCTGAAACAATCTAAGCGAGTGAGGGACGTGGTGTGGGATGACCAGGGC				4q24	PREDICTED: Rattus norvegicus similar to mKIAA2027 protein (predicted) (RGD1565690_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650328-S	ILMN_54097	UAP1_PREDICTED	XM_222863.4	XM_222863.4		304954	109477926	XM_222863.4	Uap1_predicted	XP_222863.4	ILMN_1368402	0000670528	S	1787	GGGCCACTAGGAAGCCATGGTTTTGATAGATCAACTGTGCACCTGCAGGA	6	+	16895059-16895108	6q12	PREDICTED: Rattus norvegicus UDP-N-acetylglucosamine pyrophosphorylase 1 (predicted) (Uap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606364	ILMN_266939	OLR67	NM_001001279.1	NM_001001279.1		365324	47606364	NM_001001279.1	Olr67	NP_001001279.1	ILMN_1650037	0002120026	S	688	CTGGTAGAAAGGCTAAAAGCCCTAAATACCTGTGTCTCCCACATCTGTGC	1	+	160747026-160747075	1q32	Rattus norvegicus olfactory receptor 67 (Olr67), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr67	Olr67
Rattus norvegicus	RefSeq	GI_62651303-S	ILMN_274910	NUDT14_PREDICTED	XM_001073187.1	XM_001073187.1		299346	109479991	XM_001073187.1	Nudt14_predicted	XP_001073187.1	ILMN_1360040	0002340112	S	442	ACCTGGTCCCCGCCGATCTACGCAGAGTTGCCACGTACATGTCTGGAGTA				6q32	PREDICTED: Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 14 (predicted) (Nudt14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454281-S	ILMN_281461	MGC72974	NM_198772.1	NM_198772.1		316976	38454281	NM_198772.1	MGC72974	NP_942067.1	ILMN_1373900	0002360168	S	1239	GGCGTGGGCCTTGACTACTACCACTTAGAAGGCTGAGGTAGGCTCATCTC	4	+	186580125-186580174	4q44	Rattus norvegicus hypothetical LOC316976 (MGC72974), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IEA]	Catalysis of the transfer of a methyl group (CH3-) to a protein [goid 8276] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742851-S	ILMN_265065	REG3A	NM_172077.1	NM_172077.1		171162	25742851	NM_172077.1	Reg3a	NP_742074.1	ILMN_1355296	0006400692	S	592	GGCAGTCTAACAGCTACCTCGGAGTTTCTGAAGTGGGGAGACCATCACTG	4	+	112368228-112368249:112368491-112368518	4q34	Rattus norvegicus regenerating islet-derived 3 alpha (Reg3a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664666-S	ILMN_53687	LOC291419	XM_225738.3	XM_225738.3		291419	62664666	XM_225738.3	LOC291419	XP_225738.3	ILMN_1356129	0004850692	S	291	CGGAAGCTACAGAATGTCCTGTTTTCTAGTTCCTGCGAGCTTCGCTGTCC				18q12.3	PREDICTED: Rattus norvegicus similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) (LOC291419), mRNA.					
Rattus norvegicus	RefSeq	GI_62664228-S	ILMN_51193	PFDN1_PREDICTED	XM_341596.3	XM_341596.3		361310	109506447	XM_341596.3	Pfdn1_predicted	XP_341597.3	ILMN_1350175	0002940154	S	589	GGAGCTCTCAACAGAGGGAAGAAATGGAGGGCAGAGGGAGAAAGCTGCCC	18	-	29043856-29043905	18p11	PREDICTED: Rattus norvegicus prefoldin 1 (predicted) (Pfdn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576712-S	ILMN_281859	OLR1726	NM_001000896.1	NM_001000896.1		405204	47576712	NM_001000896.1	Olr1726	NP_001000896.1	ILMN_1359324	0006290020	S	705	GGCCACATGCAGTTCCCACCTATCCGTAGTCCTCCTTTTTTATAGCACAA	20	-	1200034-1200083	20p12	Rattus norvegicus olfactory receptor 1726 (Olr1726), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1726	Olr1726
Rattus norvegicus	RefSeq	GI_62650843-S	ILMN_276517	LOC366669	XM_001080795.1	XM_001080795.1		366669	109479538	XM_001080795.1	LOC366669	XP_001080795.1	ILMN_1374968	0004780095	S	10920	GACAGCTCAAAAGAATAAGGAAGCAATCCAGACCGAAATCCAGGCACGGC				6q24	PREDICTED: Rattus norvegicus similar to mKIAA1011 protein (LOC366669), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650894-S	ILMN_276517	LOC366669	XM_001080795.1	XM_001080795.1		366669	109479538	XM_001080795.1	LOC366669	XP_001080795.1	ILMN_1364251	0000460279	S	20560	GACGCTTCTTTGACCAGCTTTGATGACGTGGACTCAGGGGAACGACTTGC				6q24	PREDICTED: Rattus norvegicus similar to mKIAA1011 protein (LOC366669), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576508-S	ILMN_264903	OLR1620	NM_001000097.1	NM_001000097.1		290018	47576508	NM_001000097.1	Olr1620	NP_001000097.1	ILMN_1355997	0002120575	S	555	GCTAGCACTGACTTGCACAAAATCTCCCCTAATAGAGTTGGCCTTCTCCA	15	+	26303431-26303480	15p14	Rattus norvegicus olfactory receptor 1620 (Olr1620), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr15-26318577-26319551_ORF; Olr1620	ratchr15-26318577-26319551_ORF; Olr1620
Rattus norvegicus	RefSeq	GI_62643057-S	ILMN_52091	RGD1306502_PREDICTED	XM_226842.4	XM_226842.4		310158	109464516	XM_226842.4	RGD1306502_predicted	XP_226842.4	ILMN_1370623	0002360465	S	1261	TCGACATCATTCAGGGAAAGGTCCTCGATGTGCTGGGCTCGCTCTACGGG	2	-	62322137-62322186	2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11193 (predicted) (RGD1306502_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.124579	ILMN_299696	SIAT7D	XM_001080040.1	XM_001080040.1		407764	109469745	XM_001080040.1	siat7D	XP_001080040.1	ILMN_1530310	0006020731	S	1219	TACCACTACTTTGAGAAGGGCAGGCTGGATGAGTGTCAGATGTACCGTTT					PREDICTED: Rattus norvegicus alpha-2,6-sialyltransferase ST6GalNAc IV (siat7D), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663691-S	ILMN_63240	LOC307029	XM_225472.3	XM_225472.3		307029	62663691	XM_225472.3	LOC307029	XP_225472.3	ILMN_1370466	0001090112	S	988	GGCAGGGGTCTGTAAGAGTCAATCAAGGGGAAAGGTATAAGACTGACTTG					PREDICTED: Rattus norvegicus similar to WAC (LOC307029), mRNA.					
Rattus norvegicus	RefSeq	GI_16758633-S	ILMN_263556	WNK1	NM_053794.1	NM_053794.1		116477	16758633	NM_053794.1	Wnk1	NP_446246.1	ILMN_1369829	0006520215	S	6810	CCCACCAGTAAGGCCTAGGGGCTAGAAGAGAGCCTTGTTACCAGAAAGCC	4	-	156298325-156298374	4q42	Rattus norvegicus WNK lysine deficient protein kinase 1 (Wnk1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized [goid 42598] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 33673] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 50794] [evidence ISS]; Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 50794] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IMP]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA];  [goid 19870] [evidence IDA]; Stops, prevents or reduces the activity of a protein serine/threonine kinase [goid 30291] [evidence IDA]	Wnk1	Wnk1
Rattus norvegicus	RefSeq	GI_62664154	ILMN_270779	RIT2	NM_001013060.1	NM_001013060.1		291713	61556828	NM_001013060.1	Rit2	NP_001013078.1	ILMN_1650847	0005690403	S	1309	ACTGGGATGATAAAAGGCTTAGGGGATCTGCTTTCGCCTGATAACCCTGG	18	-	23316615-23316664	18p12	Rattus norvegicus Ras-like without CAAX 2 (Rit2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109463; Rit1	MGC109463; Rit1
Rattus norvegicus	RefSeq	GI_9506420-S	ILMN_263178	BACE1	NM_019204.1	NM_019204.1		29392	9506420	NM_019204.1	Bace1	NP_062077.1	ILMN_1368706	0006130739	S	2029	CAGAGCACCTCAGGACCCTCACCAACCTGCCGAATGCTTCTGCCTTGACA				8q22	Rattus norvegicus beta-site APP cleaving enzyme 1 (Bace1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence IMP]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence ISS]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Bace	Bace
Rattus norvegicus	RefSeq	GI_62658516-S	ILMN_272546	LOC686384	XM_001073880.1	XM_001073880.1		686384	109496657	XM_001073880.1	LOC686384	XP_001073880.1	ILMN_1367953	0000770253	S	2297	ACCGCTCTCTGGATAGGAAAGCAGGGAGGAAGCGGTCACCCTCATTCACC					PREDICTED: Rattus norvegicus similar to Kif19A CG9913-PB, isoform B (LOC686384), mRNA.					
Rattus norvegicus	RefSeq	GI_15826855-S	ILMN_296905	KCNQ3	NM_031597.2	NM_031597.2		29682	15826855	NM_031597.2	Kcnq3	NP_113785.2	ILMN_1365851	0003170594	S	5578	GCCGTAGCAATGCAGGATGAGCAAGGCATGATGGGCACACCAGTAGACAG				7q33	Rattus norvegicus potassium voltage-gated channel, subfamily Q, member 3 (Kcnq3), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643348-S	ILMN_281173	EXOSC9	NM_001025406.1	NM_001025406.1		294975	70794771	NM_001025406.1	Exosc9	NP_001020577.1	ILMN_1362725	0001570398	S	1041	GACTCCTGGAACTGCCCAGATTGGAGAGGGAATAGAAAACTCCTGGGGTG	2	+	123059836-123059885	2q25	Rattus norvegicus exosome component 9 (Exosc9), mRNA.	Complex of 3'-5' exoribonucleases [goid 178] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule [goid 175] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647200-S	ILMN_55361	LOC500109	XR_000310.1	XR_000310.1		500109	62647200	XR_000310.1	LOC500109		ILMN_1372811	0001050348	S	1673	GTCCTGTGCCTATCAAGTGGTCTGGGGCATGGATGTGCCTGTGGAAGAAC				4q24	PREDICTED: Rattus norvegicus similar to fibroblast growth factor receptor 1 isoform 9 precursor (LOC500109), mRNA.					
Rattus norvegicus	RefSeq	GI_62663857-S	ILMN_50134	LOC502139	XM_577591.1	XM_577591.1		502139	62663857	XM_577591.1	LOC502139	XP_577591.1	ILMN_1355818	0002360184	S	615	CTGTTTGCGATTGCGGAAACTTTGTCAAGAGACCGGGACCCACTAGGGCC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502139), mRNA.					
Rattus norvegicus	RefSeq	GI_62645900-S	ILMN_273749	PANK2_PREDICTED	XM_001081198.1	XM_001081198.1		296167	109470845	XM_001081198.1	Pank2_predicted	XP_001081198.1	ILMN_1365702	0001090735	S	1628	GTTGGCGCACTCCTTGAGCTGTTGAAGATACCCTGACTTACCCAGAGGAC				3q36	PREDICTED: Rattus norvegicus pantothenate kinase 2 (Hallervorden-Spatz syndrome) (predicted) (Pank2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981289-S	ILMN_274468	NRD1	NM_012993.1	NM_012993.1		25499	6981289	NM_012993.1	Nrd1	NP_037125.1	ILMN_1360625	0003840202	S	3460	TCTCCTGGCAGAGTCCACCACCCCCATTACTGACATCAGGGCCTTCACAG	5	+	130408614-130408663	5q35	Rattus norvegicus nardilysin, N-arginine dibasic convertase, NRD convertase 1 (Nrd1), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [pmid 15809022] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	NRDC	NRDC
Rattus norvegicus	RefSeq	GI_27718600-S	ILMN_269895	RGD1565117_PREDICTED	XM_001055593.1	XM_001055593.1		299848	109482063	XM_001055593.1	RGD1565117_predicted	XP_001055593.1	ILMN_1360197	0006520204	S	229	GTCACCAGGAATCCATCTCGTGAGGACCGAACACCCCCACCACGATTCAG				7q22	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (predicted) (RGD1565117_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651837-S	ILMN_62148	ANKRD47_PREDICTED	XM_345803.3	XM_345803.3		366848	109480342	XM_345803.3	Ankrd47_predicted	XP_345804.3	ILMN_1358945	0001450092	S	2418	TCGACTCCAGGGTCTCCCACAGCCACACTGCAAAGGGATACAGGACCTCA	7	+	16319329-16319378	7q12	PREDICTED: Rattus norvegicus ankyrin repeat domain 47 (predicted) (Ankrd47_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654035-S	ILMN_289106	LOC501026	XM_001062112.1	XM_001062112.1		501026	109485043	XM_001062112.1	LOC501026	XP_001062112.1	ILMN_1367663	0001090332	S	610	GACCCGGAGAAGGTGTTTTTGGAGGATGTGGGAATAATGGGGACTGCGTG				8q31	PREDICTED: Rattus norvegicus similar to SH3 domain binding glutamic acid-rich protein like 2 (LOC501026), mRNA.					
Rattus norvegicus	RefSeq	GI_62640788-S	ILMN_54253	LOC499193	XM_574480.1	XM_574480.1		499193	62640788	XM_574480.1	LOC499193	XP_574480.1	ILMN_1349510	0000520086	S	544	GAGCTTCAACCAGTGTTCCCACTTCCTCACCCACCAGAGAACATGCACAG					PREDICTED: Rattus norvegicus similar to replication initiator 1 (LOC499193), mRNA.					
Rattus norvegicus	RefSeq	GI_19173731-S	ILMN_297066	IL4RA	NM_133380.1	NM_133380.1		25084	19173731	NM_133380.1	Il4ra	NP_596871.1	ILMN_1372125	0005420086	S	3296	CCCAGTAAACAAACACAGCAGCCTAGTGGCAGGTCCCAGTGGACACCACC	1	+	184637583-184637632	1q36	Rattus norvegicus interleukin 4 receptor, alpha (Il4ra), mRNA.		The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence TAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 1 cell differentiation [goid 45626] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T-helper 2 cell differentiation [goid 45630] [evidence ISS]	Combining with interleukin-4 to initiate a change in cell activity [goid 4913] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]	Il4r	Il4r
Rattus norvegicus	RefSeq	GI_62663931-S	ILMN_61733	LOC291332	XM_225591.3	XM_225591.3		291332	62663931	XM_225591.3	LOC291332	XP_225591.3	ILMN_1354247	0003520121	S	3187	CCAGGTGGAAGAAGCAAAATTCGCACACGCCTGGGAAATGAAGCACAACG				17q12.3	PREDICTED: Rattus norvegicus similar to novel MAM domain containing protein (LOC291332), mRNA.					
Rattus norvegicus	RefSeq	GI_19424311-S	ILMN_293484	KHSRP	NM_133602.1	NM_133602.1		171137	19424311	NM_133602.1	Khsrp	NP_598286.1	ILMN_1365967	0006220575	S	2096	CACAGCCACCTTCCACCCAGCAGGGACAGCAGCAGGCAACTGAAGCAAAT	Un|NW_047865.1	+	41544-41578:42567-42581		Rattus norvegicus KH-type splicing regulatory protein (Khsrp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IPI]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the 3' untranslated region of an mRNA molecule [goid 3730] [evidence IDA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Marta1	Marta1
Rattus norvegicus	RefSeq	GI_62661491-S	ILMN_264961	RGD1560814_PREDICTED	XM_001059806.1	XM_001059806.1		290229	109502432	XM_001059806.1	RGD1560814_predicted	XP_001059806.1	ILMN_1358922	0005420338	S	1062	GAGCAACCCTCGAACGAAATCAGGCTGCTGGAGGCCATGTATCAACCCGC				15p13	PREDICTED: Rattus norvegicus similar to testis-specific serine kinase 4 (predicted) (RGD1560814_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662862-S	ILMN_51760	LOC498656	XM_579844.1	XM_579844.1		498656	62662862	XM_579844.1	LOC498656	XP_579844.1	ILMN_1348891	0005570673	S	440	ATGTGCTCCCGACAGCGTGAGAAAGTTGACGGCCTTGGGTCTCCTAGTCC					PREDICTED: Rattus norvegicus LOC498656 (LOC498656), mRNA.					
Rattus norvegicus	RefSeq	GI_62657296-S	ILMN_265098	CDC42EP4_PREDICTED	XM_001081647.1	XM_001081647.1		303653	109492146	XM_001081647.1	Cdc42ep4_predicted	XP_001081647.1	ILMN_1360941	0004730369	S	2563	CTGGGGAGGTGGTAGCTCATTACTTTTCTGTGCTGGGAGCAGGCTGACAC				10q32.1	PREDICTED: Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 4 (predicted) (Cdc42ep4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641239-S	ILMN_291894	UBFD1	NM_001034911.1	NM_001034911.1		293454	77917605	NM_001034911.1	Ubfd1	NP_001030083.1	ILMN_1364280	0001050707	S	953	CTCTGGCCCAGGAGACTGACCCAAAGTGAAGGACATTGCCGGGAGAGGTC	1	+	180900962-180901011	1q36	Rattus norvegicus ubiquitin family domain containing 1 (Ubfd1), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]		Ubph	Ubph
Rattus norvegicus	RefSeq	GI_62642540-S	ILMN_69318	RGD1311558_PREDICTED	XM_214734.4	XM_214734.4		292139	109460288	XM_214734.4	RGD1311558_predicted	XP_214734.4	ILMN_1359298	0000430253	S	3295	GTATTTTTGCACGTGTGCTACTAGTGGGCCTGGGGAGGTGGGAAGGCAGG	1	-	265492154-265492203	1q55	PREDICTED: Rattus norvegicus similar to 4930506M07Rik protein (predicted) (RGD1311558_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978640-S	ILMN_61845	CEBPA	NM_012524.2	NM_012524.2		24252	81295399	NM_012524.2	Cebpa	NP_036656.1	ILMN_1374632	0007040133	S	1106	AAGCGGGTGGAACAGCTGAGCCGTGAACTGGACACGCTGCGGGGTATCTT	1	+	87627216-87627265	1q21	Rattus norvegicus CCAAT/enhancer binding protein (C/EBP), alpha (Cebpa), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IDA]; A multiprotein complex containing a heterodimeric E2F transcription factor and a Retinoblastoma (Rb) family member. This complex is capable of repressing transcription of E2F-regulated genes in order to regulate cell cycle progression [goid 35189] [evidence IDA]	A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B2 stimulus [goid 33274] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of adipocyte differentiation [goid 45600] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	DBPCEP	DBPCEP
Rattus norvegicus	RefSeq	GI_62651109-S	ILMN_70381	RGD1559513_PREDICTED	XM_234443.4	XM_234443.4		314337	109478563	XM_234443.4	RGD1559513_predicted	XP_234443.4	ILMN_1359121	0003870167	S	1579	AATTGGCCGCACTGGGCGCTCGGGAAACACAGGCATCGCCACCACCTTTA	6	-	111779627-111779676	6q31	PREDICTED: Rattus norvegicus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 (predicted) (RGD1559513_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426778-S	ILMN_262833	FEV	NM_144753.1	NM_144753.1		246271	21426778	NM_144753.1	Fev	NP_653354.1	ILMN_1358143	0002510600	S	1537	GTACCTCGGTAGTACCTCGAGGCTTCTCACACTCCCCTTTTCGGGATATG				9q33	Rattus norvegicus FEV (ETS oncogene family) (Fev), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Pet1	Pet1
Rattus norvegicus	RefSeq	GI_62641001-S	ILMN_64787	LOC497737	XM_579640.1	XM_579640.1		497737	62641001	XM_579640.1	LOC497737	XP_579640.1	ILMN_1361189	0004050538	S	1585	AAAGTGTTCAGAATCCTGATACCTCCAACGGGACTCCCCGAAGTACAGGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_134418 (LOC497737), mRNA.					
Rattus norvegicus	RefSeq	GI_47576760-S	ILMN_300987	OLR17	NM_001000937.1	NM_001000937.1		405261	47576760	NM_001000937.1	Olr17	NP_001000937.1	ILMN_1368938	0003450059	S	587	CCTTGGGTTATACGTGCAGCTCTGTGGTGATTCTCAGTTCATTCCTTCTC	1	-	142443822-142443871	1q32	Rattus norvegicus olfactory receptor 17 (Olr17), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr17	Olr17
Rattus norvegicus	RefSeq	GI_62642929-S	ILMN_281975	RGD1307506_PREDICTED	XM_001067684.1	XM_001067684.1		294744	109465937	XM_001067684.1	RGD1307506_predicted	XP_001067684.1	ILMN_1357304	0002030301	S	966	AGGTCACCATGTGGGCCAACGAACACTGTGAGGGTGGCAATTTTGGAGTG				2q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310016C16 (predicted) (RGD1307506_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658237-S	ILMN_57603	RGD1308065_PREDICTED	XM_213581.4	XM_213581.4		287935	109493649	XM_213581.4	RGD1308065_predicted	XP_213581.4	ILMN_1366253	0005360671	S	1162	CCCTCAGATATGGGCAGTGTGTGTTTAGATCAGTACCTTGCGATGGCCCC	11	+	85900885-85900934	11q23	PREDICTED: Rattus norvegicus hypothetical LOC287935 (predicted) (RGD1308065_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577988-S	ILMN_297967	OLR1086	NM_001000419.1	NM_001000419.1		299588	47577988	NM_001000419.1	Olr1086	NP_001000419.1	ILMN_1374183	0002360050	S	432	GGCCCTTGGATCATGGATAGTTAGTGTCATGAGTTCCCTGCCCGAGACCT	7	+	12362550-12362599	7q11	Rattus norvegicus olfactory receptor 1086 (Olr1086), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1086	Olr1086
Rattus norvegicus	RefSeq	GI_62665892-S	ILMN_48413	LOC365555	XM_574743.1	XM_574743.1		365555	62665892	XM_574743.1	LOC365555	XP_574743.1	ILMN_1353238	0003390079	S	9	TGCCCTTGACAGTGGCTGTGTCTCGTTTGTGTGCAGTGTTCCCTCCTGGA					PREDICTED: Rattus norvegicus similar to NAD(P)H dehydrogenase, quinone 2 (LOC365555), mRNA.					
Rattus norvegicus	RefSeq	GI_62660881-S	ILMN_60187	LOC305579	XM_223682.3	XM_223682.3		305579	62660881	XM_223682.3	LOC305579	XP_223682.3	ILMN_1363718	0005720750	S	2502	TCCTACCACCCAGCCTGATGACCTAAGCTCAAACCCTGAGACCCACACAG				14q22	PREDICTED: Rattus norvegicus similar to KIAA1841 protein (predicted) (LOC305579), mRNA.					
Rattus norvegicus	RefSeq	GI_62654693-S	ILMN_47749	SRF_PREDICTED	XM_217346.4	XM_217346.4		301242	109485774	XM_217346.4	Srf_predicted	XP_217346.4	ILMN_1353830	0007040671	S	2526	ACAGCCGTCAGCAGAGATCCAGGAAGAAGTGGCGTTGACCAGCTTGGGCT	9	+	9741812-9741861	9q12	PREDICTED: Rattus norvegicus serum response factor (predicted) (Srf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643575-S	ILMN_54170	LOC499639	XM_579993.1	XM_579993.1		499639	62643575	XM_579993.1	LOC499639	XP_579993.1	ILMN_1358893	0001740446	S	918	GACAGCGCCTAGCTGCTCTAGACAATACTGTGTGAAGGCAAAATCTCCAG					PREDICTED: Rattus norvegicus LOC499639 (LOC499639), mRNA.					
Rattus norvegicus	RefSeq	GI_62661063-S	ILMN_55573	LOC316931	XM_229505.4	XM_229505.4		316931	109501221	XM_229505.4	LOC316931	XP_229505.2	ILMN_1350129	0005360619	S	568	GGCCAGCAAGACCATGTACACCGCAGATATTGAATCCTTGTGTCCTGTTG	15	+	5384952-5385001	15p16	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC316931), mRNA.					
Rattus norvegicus	RefSeq	GI_11968083-S	ILMN_266991	SMN1	NM_022509.1	NM_022509.1		64301	11968083	NM_022509.1	Smn1	NP_071954.1	ILMN_1357745	0006220309	S	1047	GTCAGCAGCAGGGCATGCATAGAGCAGCAGTTGGAGGAACCGATCAATCG	2	+	31159760-31159809	2q12	Rattus norvegicus survival motor neuron 1 (Smn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A class of nuclear body, first seen after silver staining by Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA [goid 15030] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence TAS]; The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence IEA]; The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEP]; The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with fibroblast growth factor [goid 17134] [evidence IPI]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	Smn	Smn
Rattus norvegicus	RefSeq	GI_62665594-S	ILMN_275775	RGD1309543_PREDICTED	XM_001072744.1	XM_001072744.1		361790	109509683	XM_001072744.1	RGD1309543_predicted	XP_001072744.1	ILMN_1361803	0000670451	S	2142	GCCGGCGGTGACCATCTTCGAGTTTGGGCATATACCTCTCTCCTTCTCGC				20p12	PREDICTED: Rattus norvegicus similar to 2310014H01Rik protein (predicted) (RGD1309543_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394278-S	ILMN_272080	SLC10A1	NM_017047.1	NM_017047.1		24777	8394278	NM_017047.1	Slc10a1	NP_058743.1	ILMN_1362567	0004280093	S	1277	CTTCGGGCAAACCATCAGAACCATGGAGCCATGAACTGAGACAGAAGGGC	6	-	104736176-104736225	6q24	Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter family), member 1 (Slc10a1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of bile acid and bile salts into, out of, within or between cells [goid 15721] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IEA]	Ntcp1; SBACT; Ntcp	Ntcp1; SBACT; Ntcp
Rattus norvegicus	RefSeq	GI_62078986-S	ILMN_271834	RGD1306410	NM_001014126.1	NM_001014126.1		360768	62078986	NM_001014126.1	RGD1306410	NP_001014148.1	ILMN_1353153	0002690563	S	2255	GCCATGAGCGACTACTGGGTTGTGGGGAAGAAGTCTGACCAGCGGGAGCT	12	+	10952085-10952134	12p11	Rattus norvegicus similar to CG14980-PB (RGD1306410), mRNA.					
Rattus norvegicus	RefSeq	GI_62649822-S	ILMN_49352	RGD1564994_PREDICTED	XM_575930.2	XM_575930.2		500563	109475641	XM_575930.2	RGD1564994_predicted	XP_575930.2	ILMN_1368912	0004850746	S	636	CCACTGTCAGAGAAGGAGCGATTCTTCAACTACTGCGGCTTGGAGCGCGC	5	-	152996640-152996689	5q36	PREDICTED: Rattus norvegicus similar to 2810043G13Rik protein (predicted) (RGD1564994_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648693-S	ILMN_270633	LOC689147	XM_001069739.1	XM_001069739.1		689147	109474719	XM_001069739.1	LOC689147	XP_001069739.1	ILMN_1369253	0004780341	S	974	GGGAAGGAACACTCGAAAGTAGGGATGTTGTTGGCGAAGTGGGAAGACTG	5	+	29424951-29425000	5q13	PREDICTED: Rattus norvegicus hypothetical protein LOC689147 (LOC689147), mRNA.					
Rattus norvegicus	RefSeq	GI_62079240-S	ILMN_301649	APH1A	NM_001014255.1	NM_001014255.1		365872	62079240	NM_001014255.1	Aph1a	NP_001014277.1	ILMN_1373565	0004570600	S	1855	CAGAGGAGTCAGACTACCATGGCATCGCAGCCCAAGAGGACAGGCATTTT	2	+	190683018-190683067	2q34	Rattus norvegicus anterior pharynx defective 1 homolog A (C. elegans) (Aph1a), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The series of successive proteolytic cleavage events that take place after a Notch receptor binds a ligand, and which lead to the release of the Notch Intracellular Domain (NICD), which is the active form of the receptor [goid 7220] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The proteolytic cleavage of a transmembrane protein leading to the release of an intracellular domain [goid 31293] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42987] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IEA]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1311546	RGD1311546
Rattus norvegicus	RefSeq	GI_31795574-S	ILMN_296579	SGTB	NM_181629.2	NM_181629.2		294708	31795574	NM_181629.2	Sgtb	NP_853660.1	ILMN_1367378	0002510563	S	1362	CTTTAGCCACAGGTTTCCCTAGGCAGTGGTTTTGAGTGGGGTGATGCTGG	2	+	35065570-35065619	2q13	Rattus norvegicus small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta (Sgtb), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence TAS]; Interacting selectively with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size [goid 30544] [evidence TAS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence TAS]	Sgt2	Sgt2
Rattus norvegicus	RefSeq	GI_62643205	ILMN_59186	RGD1563869_PREDICTED	XM_226953.4	XM_226953.4		310233	109464605	XM_226953.4	RGD1563869_predicted	XP_226953.4	ILMN_1650815	0003190463	S	1841	GAGGGACAGTCACCCTGAGAAAGCCCAGAGGAGAAGGCAAAAAGTGCCGC	2	+	94393110-94393128:94394021-94394051	2q23	PREDICTED: Rattus norvegicus sim ilar to glucocorticoid induced gene 1 (predicted) (RGD1563869_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655950-S	ILMN_63559	LOC363562	XM_573066.1	XM_573066.1		363562	62655950	XM_573066.1	LOC363562	XP_573066.1	ILMN_1368942	0002570671	S	780	GGTGACTACACCATCCTCCAAACACAGGCCATTCTCGAGGATGCCATCCC				10q12	PREDICTED: Rattus norvegicus similar to Hdac1 protein (LOC363562), mRNA.					
Rattus norvegicus	RefSeq	GI_62659631-S	ILMN_60184	RGD1561961_PREDICTED	XM_213926.4	XM_213926.4		289181	109498107	XM_213926.4	RGD1561961_predicted	XP_213926.4	ILMN_1349638	0002320181	S	3084	TGCAAAGTGCAATACTCCCTAACCCTCAGCCGTGGGCGCCTGGATCAGTG	13	-	81082418-81082467	13q23	PREDICTED: Rattus norvegicus similar to IQ motif and WD repeats 1 (predicted) (RGD1561961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639884-S	ILMN_267485	RGD1563073_PREDICTED	XR_009371.1	XR_009371.1		292846	109461823	XR_009371.1	RGD1563073_predicted		ILMN_1374520	0004540411	S	1171	GTCTCAGTGTCTCAGAGTCCCCTGGTTGAATCCCATGCAGATGACAGCTC				1q22	PREDICTED: Rattus norvegicus similar to SIGLEC-like 1 (predicted) (RGD1563073_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662800-S	ILMN_48047	LOC498646	XM_573928.1	XM_573928.1		498646	62662800	XM_573928.1	LOC498646	XP_573928.1	ILMN_1367356	0006940711	S	1165	TCACACCAGATTTTCGCCAGAGACTATGAAAGCCAGAAGATCCTGGACAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498646), mRNA.					
Rattus norvegicus	RefSeq	GI_62667532-S	ILMN_266259	RGD1566014_PREDICTED	XM_001053469.1	XM_001053469.1		501661	109462280	XM_001053469.1	RGD1566014_predicted	XP_001053469.1	ILMN_1350501	0005890082	S	848	CCTGGTACACTCGGTGCCTTCGCTGACGTTCTTGTCAGGTGTGAGGTGTC				Xq37	PREDICTED: Rattus norvegicus similar to Factor VIII associated protein (predicted) (RGD1566014_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656545-S	ILMN_55207	RGD1311334_PREDICTED	XM_220710.4	XM_220710.4		303312	109488540	XM_220710.4	RGD1311334_predicted	XP_220710.4	ILMN_1372786	0001690440	S	5507	CCGACCATTCCTTGACTGTTTGGAAGGAGCTGGAGCAGAAGCCCACGCAC	10	-	62758740-62758789	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1311334_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11024663-S	ILMN_286549	LTBP1	NM_021587.1	NM_021587.1		59107	11024663	NM_021587.1	Ltbp1	NP_067598.1	ILMN_1363431	0003170280	S	5955	CCCTTGGTCCGGAGACTTTGAAAAACAAATTGTCTGTCCTGTGGAGCAGG	6	-	19942669-19942718	6q12	Rattus norvegicus latent transforming growth factor beta binding protein 1 (Ltbp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652740-S	ILMN_272362	RGD1563141_PREDICTED	XM_001076724.1	XM_001076724.1		315135	109482574	XM_001076724.1	RGD1563141_predicted	XP_001076724.1	ILMN_1349053	0003120364	S	1823	AAGGCATAGTTGGGGTGACAGAGGAGCAAGTGCACCGGATCGTCAAGCAG				7q34	PREDICTED: Rattus norvegicus similar to SUN2 (predicted) (RGD1563141_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666105-S	ILMN_58521	LOC499450	XM_574773.1	XM_574773.1		499450	62666105	XM_574773.1	LOC499450	XP_574773.1	ILMN_1358333	0000840441	S	65	CCGCGCTCGAGATCAAGATGTGCCTGCTTCAACAGTGCAGGATGTGGCAA				20q11	PREDICTED: Rattus norvegicus LOC499450 (LOC499450), mRNA.					
Rattus norvegicus	RefSeq	GI_62648099-S	ILMN_52197	RGD1310710_PREDICTED	XM_232333.4	XM_232333.4		312677	109472559	XM_232333.4	RGD1310710_predicted	XP_232333.3	ILMN_1357045	0002480270	S	1299	GGCTCTCCGACAGAAGCTGAGAGACCTGGAGCAAACGCTCTATAAGGCAA	4	-	156705523-156705527:156707383-156707427	4q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700091N06 (predicted) (RGD1310710_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786195-S	ILMN_277428	ATRN	NM_031351.1	NM_031351.1		83526	13786195	NM_031351.1	Atrn	NP_112641.1	ILMN_1356055	0001190168	S	8276	GGGTGCCCTCCAGAGTGCAGGGAGAAACTGGCACCTTCTTTCCTAAAGGC	3	+	118700724-118700773	3q36	Rattus norvegicus attractin (Atrn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50054323-S	ILMN_272504	SLC27A1	NM_053580.2	NM_053580.2		94172	50054323	NM_053580.2	Slc27a1	NP_446032.2	ILMN_1364053	0001580008	S	2774	TGGATGTAGCTAGTGTTGGCCCTGCCCACGTGTGTCAATTCAGGGGTCCC	16	+	18786575-18786624	16p14	Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 1 (Slc27a1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15245] [evidence NAS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	FATP	FATP
Rattus norvegicus	RefSeq	GI_47577704-S	ILMN_262501	OLR57	NM_001000749.1	NM_001000749.1		405018	47577704	NM_001000749.1	Olr57	NP_001000749.1	ILMN_1349976	0000050100	S	775	AGCCTGTCATTGGTGCACAGATTTGGAAAGCACGCCCCTCCCTTTGTGCA	1	-	160581060-160581109	1q32	Rattus norvegicus olfactory receptor 57 (Olr57), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr57	Olr57
Rattus norvegicus	RefSeq	GI_62078842-S	ILMN_266429	TMEM209	NM_001014055.1	NM_001014055.1		312200	62078842	NM_001014055.1	Tmem209	NP_001014077.1	ILMN_1353761	0000110576	S	1757	GGCCTGGAAGGAGTTGAAGCTAAGTATGTCCGCGAGTTGAATCCAGGGTG	4	-	57392734-57392751:57394436-57394467	4q22	Rattus norvegicus transmembrane protein 209 (Tmem209), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62661816-S	ILMN_277552	PHR1_PREDICTED	XM_001076799.1	XM_001076799.1		290447	109502902	XM_001076799.1	Phr1_predicted	XP_001076799.1	ILMN_1367300	0001770411	S	15189	GCAGTGCAATACTGGGTGTGCCTCACTACCTTGCAGCTGTCAGCATATTG				15q22	PREDICTED: Rattus norvegicus pam, highwire, rpm 1 (predicted) (Phr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20806154-S	ILMN_280577	TMEM150	NM_139107.1	NM_139107.1		245966	20806154	NM_139107.1	Tmem150	NP_620807.1	ILMN_1350385	0000670114	S	1271	GCAGCAGGGGCTCACAAGTCTGGATGATGGGAGGAGCATGCCTTAGCCTA	4	+	105664464-105664513	4q33	Rattus norvegicus transmembrane protein 150 (Tmem150), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism [goid 9056] [evidence IEP]			
Rattus norvegicus	RefSeq	GI_62651432-S	ILMN_285075	RGD1565917_PREDICTED	XM_001055644.1	XM_001055644.1		503049	109479633	XM_001055644.1	RGD1565917_predicted	XP_001055644.1	ILMN_1360828	0005890341	S	1105	TGTGAACTACCTGCTTGGTCACCCTCAGGTCAAGGGTCCAGGAATTGGCC				6q31	PREDICTED: Rattus norvegicus similar to peroxisomal acyl-CoA thioesterase Ic (predicted) (RGD1565917_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865863-A	ILMN_275845	DGCR2	NM_001012146.1	NM_001012146.1		360742	58865863	NM_001012146.1	Dgcr2	NP_001012146.1	ILMN_1376426	0003450368	S	433	TGACGGCTGGCCAACGTGTGAGGATAAGAGTGATGAAGCCGACTGTCCGG	11	+	85102443-85102492	11q23	Rattus norvegicus DiGeorge syndrome critical region gene 2 (Dgcr2), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661118-S	ILMN_275758	RGD1559461_PREDICTED	XR_008496.1	XR_008496.1		289932	109502186	XR_008496.1	RGD1559461_predicted		ILMN_1362382	0002940358	S	127	TTGACCTTGGATCTGAGGGTGCAGCTGCGGGAACTCAACATAACCGTGGT				15p16	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (predicted) (RGD1559461_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540684-S	ILMN_285582	MGAT1	NM_030861.1	NM_030861.1		81519	13540684	NM_030861.1	Mgat1	NP_110488.1	ILMN_1352213	0001340039	S	2233	TGCATTCTTTAGGGGGATTCAGTGGCAGCCTAGTGGGGGACAGTGGGCTC	10	+	34724015-34724064	10q21	Rattus norvegicus mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (Mgat1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,3-(R1)-beta-D-mannosyl-R2 = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3-(R1)-beta-D-mannosyl-R2 [goid 3827] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577998-S	ILMN_282033	OLR1083	NM_001000710.1	NM_001000710.1		404959	47577998	NM_001000710.1	Olr1083	NP_001000710.1	ILMN_1353228	0003850092	S	665	TAGTGTCCTCCATACGTTCTGTCTCTTCAGTTAAAGGGAAGTACAAGGCC	7	-	12227942-12227991	7q11	Rattus norvegicus olfactory receptor 1083 (Olr1083), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34854148-S	ILMN_280367	ELOVL7_PREDICTED	XM_001065454.1	XM_001065454.1		361895	109465920	XM_001065454.1	Elovl7_predicted	XP_001065454.1	ILMN_1350899	0002450736	S	540	GCACGTGGTCATGTATTTCTACTATGGACTGTGTGCAATGGGACCAGCCT				2q14	PREDICTED: Rattus norvegicus ELOVL family member 7, elongation of long chain fatty acids (yeast) (predicted) (Elovl7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660681-S	ILMN_278051	ZFP509_PREDICTED	XM_001062542.1	XM_001062542.1		305428	109500809	XM_001062542.1	Zfp509_predicted	XP_001062542.1	ILMN_1358431	0004610369	S	2394	CCCTCCTAGCATGAGTGACCAGGACAAACTGAGCCTGGAACCCACTAAGG				14q21	PREDICTED: Rattus norvegicus zinc finger protein 509 (predicted) (Zfp509_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654981-S	ILMN_66518	LOC501133	XM_576553.1	XM_576553.1		501133	62654981	XM_576553.1	LOC501133	XP_576553.1	ILMN_1353522	0005700446	S	17526	CAGAGGCAGACAAAGAAGAGACAAGCCCCTCAGATGCTAGGGCCAAATGC					PREDICTED: Rattus norvegicus LOC501133 (LOC501133), mRNA.					
Rattus norvegicus	RefSeq	GI_62662487-S	ILMN_275926	LOC679663	XM_001053910.1	XM_001053910.1		679663	109503635	XM_001053910.1	LOC679663	XP_001053910.1	ILMN_1359630	0005360736	S	378	CCCAACTGCACCTGAAATTGCACTGGAACTGCTGATGGCCGTGAACTTCT	16|NW_047479.1	-	183248-183297		PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 1 (LOC679663), mRNA.					
Rattus norvegicus	RefSeq	GI_62660022-S	ILMN_65353	PDE6B_PREDICTED	XM_214126.4	XM_214126.4		289878	109499338	XM_214126.4	Pde6b_predicted	XP_214126.2	ILMN_1366565	0003940131	S	2542	GTAGCAGCCAAGAAAGCGGGCACAGAAATTTGCAATGGTGGTCCAGCACC	14	-	1871235-1871269:1871899-1871913	14p22	PREDICTED: Rattus norvegicus phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide (predicted) (Pde6b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9845260-S	ILMN_270740	LGALS1	NM_019904.1	NM_019904.1		56646	9845260	NM_019904.1	Lgals1	NP_063969.1	ILMN_1367523	0001410471	S	165	CCTACACTTCAACCCCCGCTTCAACGCCCACGGAGATGCCAACACCATTG	7	+	116896228-116896277	7q34	Rattus norvegicus lectin, galactose binding, soluble 1 (Lgals1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IPI]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with any glycoside in which the sugar moiety is galactose [goid 16936] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62662794-S	ILMN_47767	LOC498644	XM_573926.1	XM_573926.1		498644	62662794	XM_573926.1	LOC498644	XP_573926.1	ILMN_1350958	0000520609	S	524	CGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGTAG					PREDICTED: Rattus norvegicus similar to Ac1-163 (LOC498644), mRNA.					
Rattus norvegicus	RefSeq	GI_62649160-S	ILMN_60525	RGD1309931_PREDICTED	XM_342856.3	XM_342856.3		362538	109475057	XM_342856.3	RGD1309931_predicted	XP_342857.3	ILMN_1370070	0001400600	S	2454	GCACCGGAATCACATCGCAACTCTCAAGTCTGAGCTCCACACAGCTTGTC	5	+	102646615-102646664	5q31	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1309931_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654882-S	ILMN_293152	KCNQ5	XM_001071249.1	XM_001071249.1		259273	109486877	XM_001071249.1	Kcnq5	XP_001071249.1	ILMN_1370238	0001570494	S	421	AAGCCGCTCTCCTACACCAGCAGCCAGAGCTGTCGGCGCAACGTCAAGTA				9q13	PREDICTED: Rattus norvegicus potassium voltage-gated channel, subfamily Q, member 5 (Kcnq5), mRNA.		The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654786-I	ILMN_293152	KCNQ5	XM_001071249.1	XM_001071249.1		259273	109486877	XM_001071249.1	Kcnq5	XP_001071249.1	ILMN_1375368	0005290487	S	3190	CAAGCCAACAGTCGCTGCTGATGCTATGGGGTGTGTGAAGATGTCGGGAT				9q13	PREDICTED: Rattus norvegicus potassium voltage-gated channel, subfamily Q, member 5 (Kcnq5), mRNA.		The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]	Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650339-S	ILMN_54629	LOC497811	XM_579397.1	XM_579397.1		497811	62650339	XM_579397.1	LOC497811	XP_579397.1	ILMN_1361251	0002350592	S	4006	GTCTGTGAGGATCTGAAGAGAAGGTCTCCAGCAGTGGTTTGTACCGCAGC				6q13	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017154 (LOC497811), mRNA.					
Rattus norvegicus	RefSeq	GI_62641312-S	ILMN_279237	RGD1561639_PREDICTED	XM_001080163.1	XM_001080163.1		308991	109462901	XM_001080163.1	RGD1561639_predicted	XP_001080163.1	ILMN_1359444	0004810717	S	2728	GCGGGGAAGCGAGGGGCACTTGGGACTTGCACCTGAATTGTTCCTTCCAT				1q36	PREDICTED: Rattus norvegicus similar to Zinc finger protein 553 (predicted) (RGD1561639_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641902-S	ILMN_298878	RGD1305514_PREDICTED	XM_001079118.1	XM_001079118.1		361736	109463634	XM_001079118.1	RGD1305514_predicted	XP_001079118.1	ILMN_1362073	0003940079	S	3615	GCAGTCAGCCAGGATAAGGGACTCTGCTCCCTTGGGGTTGCAGTTCTGAA				1q43	PREDICTED: Rattus norvegicus similar to expressed sequence AV312086 (predicted) (RGD1305514_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641702-S	ILMN_53729	LOC499299	XM_574596.1	XM_574596.1		499299	62641702	XM_574596.1	LOC499299	XP_574596.1	ILMN_1369042	0002810524	S	977	TCCCTCTGTCCAGCAACATTGGATCCCACGGCTCAACCTCAAGTAAACCC					PREDICTED: Rattus norvegicus similar to putative G-protein coupled receptor (LOC499299), mRNA.					
Rattus norvegicus	RefSeq	GI_62658887-S	ILMN_296128	RGD1310788_PREDICTED	XM_001079575.1	XM_001079575.1		304485	109497398	XM_001079575.1	RGD1310788_predicted	XP_001079575.1	ILMN_1354452	0006590286	S	640	TTTGAAGCTCTTGGTCTGCTGATTCTGCTTCGGCTCTGGAGGGTGGCCCG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610039P13 (predicted) (RGD1310788_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662529-S	ILMN_273518	LOC306346	XM_001070347.1	XM_001070347.1		306346	109503975	XM_001070347.1	LOC306346	XP_001070347.1	ILMN_1354547	0001580575	S	843	GGTTCAGGCCATGTGGAGGGGACATTATACTCGAAGCTGCCTCACCACGG				16p14	PREDICTED: Rattus norvegicus similar to KIAA1683 (LOC306346), mRNA.					
Rattus norvegicus	RefSeq	GI_49169842-A	ILMN_300037	RNF141	NM_001001800.1	NM_001001800.1		308900	49169842	NM_001001800.1	rnf141	NP_001001800.1	ILMN_1376941	0005570592	S	687	CGCCTACAGATGACTGGAGCGAATGAATCGTGGGTGGTGTCAGACGCGCC	1	-	168572613-168572662	1q33	Rattus norvegicus ring finger protein 141 (rnf141), mRNA.		Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12621083-S	ILMN_273551	GRK4	NM_022928.1	NM_022928.1		59077	12621083	NM_022928.1	Grk4	NP_075217.1	ILMN_1362371	0005290446	S	1865	GGCCTGCCTGAACATTGCCCACAGTGAGGAGAGGGAGCCAACAGAACACT	14	-	81648085-81648134	14q21	Rattus norvegicus G protein-coupled receptor kinase 4 (Grk4), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway [goid 2029] [evidence IMP]; The process by which a G-protein coupled receptor is taken up into an endocytic vesicle [goid 2031] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of the reaction: ATP + rhodopsin = ADP + phosphorhodopsin [goid 50254] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667235-S	ILMN_293512	TAF7L_PREDICTED	XM_001068635.1	XM_001068635.1		363493	109512328	XM_001068635.1	Taf7l_predicted	XP_001068635.1	ILMN_1349526	0004010142	S	1502	GATTAACTTTCCAGATGAAGACTCAGGGGGACCACATACTTCTGTCCCTC				Xq34	PREDICTED: Rattus norvegicus TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf7l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718624-S	ILMN_49597	LOC287228	XM_220355.3	XM_220355.3		287228	62718624	XM_220355.3	LOC287228	XP_220355.3	ILMN_1357480	0005550671	S	2640	TGGCTTAGCGTCCCAGATGAAGGAACTCTGACCTCTACTGAAGATTCCTC				3p13	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC287228), mRNA.					
Rattus norvegicus	RefSeq	GI_62656348-S	ILMN_61714	RGD1308134_PREDICTED	XM_213357.4	XM_213357.4		287452	109488398	XM_213357.4	RGD1308134_predicted	XP_213357.2	ILMN_1368376	0005690288	S	502	GACGCCAACAGTGACCTGGTGGATGTCGAAGGGCTAGGAGAAACTCCTCC	10	-	57074835-57074884	10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110020A23 (predicted) (RGD1308134_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394020-S	ILMN_278364	PPP2CB	XM_001067962.1	XM_001067962.1		24673	109504316	XM_001067962.1	Ppp2cb	XP_001067962.1	ILMN_1372542	0002190575	S	1454	GCCGTCCTTCGTGACTGGTTAAGGGAAAGGGTCACTGGTGGCTTCATCTC				16q12.3	PREDICTED: Rattus norvegicus protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform (Ppp2cb), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence ISS]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IDA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34872559-S	ILMN_262981	RGD1308878_PREDICTED	XM_001074277.1	XM_001074277.1		298623	109477668	XM_001074277.1	RGD1308878_predicted	XP_001074277.1	ILMN_1367158	0000360008	S	866	GCCCTGAAAACATCCCTAAAAGGTTCAAGACTGAATACCGGCCACCGGAA				5q36	PREDICTED: Rattus norvegicus similar to arylacetamide deacetylase (predicted) (RGD1308878_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592130-S	ILMN_270172	DGKZ	NM_031143.1	NM_031143.1		81821	13592130	NM_031143.1	Dgkz	NP_112405.1	ILMN_1373637	0006020075	S	3163	TTCATGGGGAACAGGAAACAAGCTGGGCTGACTGGGTCCCTCCCTTCAGG	3	-	76313060-76313109	3q24	Rattus norvegicus diacylglycerol kinase zeta (Dgkz), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A cell cycle checkpoint that arrests cell cycle progression G1 phase in response to DNA damage [goid 31571] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence ISS]	Catalysis of the phosphorylation of a simple or complex lipid [goid 1727] [evidence IEA]; Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IDA]; Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate [goid 4143] [evidence IEA]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_7106247-S	ILMN_280889	ANKRD1	NM_013220.1	NM_013220.1		27064	7106247	NM_013220.1	Ankrd1	NP_037352.1	ILMN_1360661	0006220670	S	1549	TGTGGTTTGCCGGATCACACAGTGCCGAGGTGAAGGCCACGTCAGGAGCG	1	-	240316269-240316318	1q53	Rattus norvegicus ankyrin repeat domain 1 (cardiac muscle) (Ankrd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence ISS]; A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end [goid 31674] [evidence IEA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence TAS]	The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence TAS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Crap; Carp; Alrp	Crap; Carp; Alrp
Rattus norvegicus	RefSeq	GI_62650154	ILMN_289731	TNFRSF14	NM_001015034.1	NM_001015034.1		366518	62543556	NM_001015034.1	Tnfrsf14	NP_001015034.1	ILMN_1650177	0006220692	S	1231	GAGCACGGCCTTCTGGGGTCAGGGTGCTTGCGATGAGACAAGAATATGGC	5	-	171728485-171728534	5q36	Rattus norvegicus tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator) (Tnfrsf14), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of alpha-beta T cell proliferation [goid 46642] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of alpha-beta T cell proliferation [goid 46642] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108903	MGC108903
Rattus norvegicus	RefSeq	GI_62646471-I	ILMN_64356	GNAS	XM_575296.2	XM_575296.2		24896	109469304	XM_575296.2	Gnas	XP_575296.1	ILMN_1375640	0006980504	S	744	AATTCGAGACCGAGCCTGAGACCGAGCCTGAGACCGCCCCTACAACTGAG	3	+	165214127-165214176	3q42	PREDICTED: Rattus norvegicus GNAS complex locus (Gnas), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31224] [evidence ISS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network [goid 32588] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS];  [goid 6112] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process by which the anatomical structures of the post-embryonic soma are generated and organized. Morphogenesis pertains to the creation of form [goid 40032] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence ISS]; The process by which the anatomical structures of cranial skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48701] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Interacting selectively with a mu-type opioid receptor [goid 31852] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658708-S	ILMN_273824	AP1S1_PREDICTED	XM_001076842.1	XM_001076842.1		360785	109497158	XM_001076842.1	Ap1s1_predicted	XP_001076842.1	ILMN_1363082	0005340270	S	820	TGAAGGCTTTAGGGGCTAGAAGGGAGGGGAATGTGACCGGATGGGGATGC				12q12	PREDICTED: Rattus norvegicus adaptor protein complex AP-1, sigma 1 (predicted) (Ap1s1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666877-S	ILMN_53964	LOC501564	XM_580211.1	XM_580211.1		501564	62666877	XM_580211.1	LOC501564	XP_580211.1	ILMN_1368420	0002370373	S	309	GGCCTCCTGGGTGCTAGGCCTGACATCATCCTGGGTTTCTGGAGAACAAC					PREDICTED: Rattus norvegicus LOC501564 (LOC501564), mRNA.					
Rattus norvegicus	RefSeq	GI_62641271-S	ILMN_55073	CD19_PREDICTED	XM_344961.2	XM_344961.2		365367	62641271	XM_344961.2	Cd19_predicted	XP_344962.2	ILMN_1367276	0000070491	S	2182	TCCCACAAGGGACAGACAGTGATGGGATTGGCACCCCTGCACAAACTGGG				1q36	PREDICTED: Rattus norvegicus CD19 antigen (predicted) (Cd19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644679-S	ILMN_66402	LOC362074	XM_347026.2	XM_347026.2		362074	62644679	XM_347026.2	LOC362074	XP_347027.1	ILMN_1353753	0001230452	S	481	AATTAAAAATTTCATCCATTCCTCTGCAGGAGGAAGGTCCTACAGGACAG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC362074), mRNA.					
Rattus norvegicus	RefSeq	GI_11120709-S	ILMN_295340	COL5A3	NM_021760.1	NM_021760.1		60379	11120709	NM_021760.1	Col5a3	NP_068528.1	ILMN_1368703	0001570402	S	5689	AAGAGGTAAACAAGATCAACGTGGGACGCCCTCCCCTGAGACGCGCCTTC	8	-	19789374-19789423	8q13	Rattus norvegicus collagen, type V, alpha 3 (Col5a3), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils [goid 5588] [evidence TAS]; A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils [goid 5588] [evidence IEA]; A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils [goid 5588] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577350-S	ILMN_295631	OLR710	NM_001000571.1	NM_001000571.1		366113	47577350	NM_001000571.1	Olr710	NP_001000571.1	ILMN_1368796	0004070072	S	320	GTGCTGAGGTCTTCCTTCTGGTGGTGATGGCCTATGATCGCTATGTAGCT	3	-	74054391-74054440	3q24	Rattus norvegicus olfactory receptor 710 (Olr710), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr710; ratchr3-73951132-73950188_ORF	Olr710; ratchr3-73951132-73950188_ORF
Rattus norvegicus	RefSeq	GI_62652772-S	ILMN_63216	ZFP41_PREDICTED	XM_235429.4	XM_235429.4		315081	109480906	XM_235429.4	Zfp41_predicted	XP_235429.3	ILMN_1356533	0004670010	S	702	TACAGCTCCTGCCTCATCCGGCATCGGAAGCGTCACCCGAGGAAGAAGCA	7	+	113562961-113563010	7q34	PREDICTED: Rattus norvegicus zinc finger protein 41 (predicted) (Zfp41_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651288-S	ILMN_277999	RGD1305627_PREDICTED	XM_001072382.1	XM_001072382.1		314467	109480028	XM_001072382.1	RGD1305627_predicted	XP_001072382.1	ILMN_1373259	0001050452	S	668	ACCCGCCGAGCTAAGGAGTTAGCAAGAGCACCTCAGAGTCATGCCCCTCA				6q32	PREDICTED: Rattus norvegicus hypothetical LOC314467 (predicted) (RGD1305627_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660326-S	ILMN_280945	RGD1565048_PREDICTED	XM_001075175.1	XM_001075175.1		305275	109500516	XM_001075175.1	RGD1565048_predicted	XP_001075175.1	ILMN_1372597	0001660707	S	63	TTCCTGAAAATGTCCACATCACTCTGAAGGGGCACACAGTGAAGGGCCCC				14p21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (predicted) (RGD1565048_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655952-S	ILMN_263339	RGD1564698_PREDICTED	XM_001064912.1	XM_001064912.1		497882	109490487	XM_001064912.1	RGD1564698_predicted	XP_001064912.1	ILMN_1366557	0005550722	S	119	CCGAGCTGGCAGACAAGAACGTGCCCAACCTTCACGTCATGAAGGCCGTG				10q12	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1564698_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871179-S	ILMN_263339	RGD1564698_PREDICTED	XM_001064912.1	XM_001064912.1		497882	109490487	XM_001064912.1	RGD1564698_predicted	XP_001064912.1	ILMN_1354728	0000630239	S	118	CCCGAGCTGGCAGACAAGAACGTGCCCAACCTTCACGTCATGAAGGCCGT				10q12	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1564698_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656289-S	ILMN_58410	ALOXE3_PREDICTED	XM_213336.3	XM_213336.3		287424	62656289	XM_213336.3	Aloxe3_predicted	XP_213336.3	ILMN_1357513	0004730435	S	1760	TGGGGCCAGAGCGACTTATCCTCAGACCTTACCCCTGCTGTTCCCGAGGA				10q24	PREDICTED: Rattus norvegicus arachidonate lipoxygenase 3 (predicted) (Aloxe3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658684-S	ILMN_63056	LOC501825	XM_577237.1	XM_577237.1		501825	62658684	XM_577237.1	LOC501825	XP_577237.1	ILMN_1348978	0002260500	S	2783	CATCGTCCATGGGCAACTTCGACTTCCTGACGGCTCTGCTCAGTTCACTT				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC501825), mRNA.					
Rattus norvegicus	RefSeq	GI_47577782-S	ILMN_273787	OLR1238	NM_001001013.1	NM_001001013.1		405387	47577782	NM_001001013.1	Olr1238	NP_001001013.1	ILMN_1374953	0006520736	S	544	CCCTTGCTTCAGCTCTCCTGCACAAGCACCTATGTTAATGAGCTCGTAGC	8	+	40593981-40594030	8q22	Rattus norvegicus olfactory receptor 1238 (Olr1238), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1238	Olr1238
Rattus norvegicus	RefSeq	GI_62641135-S	ILMN_48530	SWAP70_PREDICTED	XM_219262.4	XM_219262.4		293410	109459239	XM_219262.4	Swap70_predicted	XP_219262.4	ILMN_1365404	0002320577	S	3703	GACTCCCATTTGGCCGATGCTCTGATGCTCGTGGGCCTCTCCTAAGACTC	1	+	167949279-167949328	1q33	PREDICTED: Rattus norvegicus SWAP complex protein (predicted) (Swap70_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540678-S	ILMN_287368	MADH7	XM_001054518.1	XM_001054518.1		81516	109507558	XM_001054518.1	Madh7	XP_001054518.1	ILMN_1361953	0006550538	S	2869	AGGGTGTAGCCCCGTCATAACAAAGGTACCATCGTAGGCTGGCTCCCAGC				18q12.3	PREDICTED: Rattus norvegicus MAD homolog 7 (Drosophila) (Madh7), mRNA.					
Rattus norvegicus	RefSeq	GI_62645221-A	ILMN_291842	ATF2	NM_031018.1	NM_031018.1		81647	13591925	NM_031018.1	Atf2	NP_112280.1	ILMN_1376383	0000430577	S	1189	TGGTTAGGGCCCAGTCAGAAGAGTCTCGTCCACAGTCCTTGCAGCAGCCA	3	-	56433842-56433891	3q23	Rattus norvegicus activating transcription factor 2 (Atf2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 42423] [evidence IPI]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	RATF2	RATF2
Rattus norvegicus	RefSeq	GI_56799387-S	ILMN_276748	DDC	NM_012545.2	NM_012545.2		24311	56799387	NM_012545.2	Ddc	NP_036677.1	ILMN_1354351	0005360576	S	4510	CACGTTAGGCTACCCTGTATCCAAGGGATGGCTGGATCTCCAATCTTCAC	14	-	92695987-92696036	14q21	Rattus norvegicus dopa decarboxylase (Ddc), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence TAS]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents, and compounds derived from amino acids, as carried out by individual cells [goid 6519] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence TAS]; The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 42423] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 42423] [evidence TAS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence TAS]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents, and compounds derived from amino acids, as carried out by individual cells [goid 6519] [evidence IEA]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]	Catalysis of the reaction: L-tryptophan = tryptamine + CO2 [goid 4058] [evidence IEA]; Catalysis of the reaction: L-tryptophan = tryptamine + CO2 [goid 4058] [evidence IDA]; Catalysis of the reaction: L-tryptophan = tryptamine + CO2 [goid 4058] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence TAS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	MGC93628	MGC93628
Rattus norvegicus	RefSeq	GI_31340951-S	ILMN_263704	GNL3	NM_175580.2	NM_175580.2		290556	31340951	NM_175580.2	Gnl3	NP_783170.1	ILMN_1357924	0001050372	S	1437	GGACATCCCCGAAGAGTCACCAAAACAGACAGAAGACCAACAGGATGGTG	16	-	6445048-6445097	16p16	Rattus norvegicus guanine nucleotide binding protein-like 3 (nucleolar) (Gnl3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IMP]	Ns	Ns
Rattus norvegicus	RefSeq	GI_62646079-S	ILMN_67316	TM9SF4_PREDICTED	XM_215889.3	XM_215889.3		296279	62646079	XM_215889.3	Tm9sf4_predicted	XP_215889.3	ILMN_1374612	0002260593	S	3616	GGCATCCACCAAGAATCAGGCTAGAGAAATGGGAGCCCGAGAGTAGAGAG				3q41	PREDICTED: Rattus norvegicus transmembrane 9 superfamily protein member 4 (predicted) (Tm9sf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758041-S	ILMN_300039	RETNLA	NM_053333.1	NM_053333.1		81712	16758041	NM_053333.1	Retnla	NP_445785.1	ILMN_1362534	0004540672	S	340	ATGCCCGCTGCTGCCAACTGTCCTAAGAATGGAGAGGCACAGAACTCAGC	11	-	53205358-53205392:53205393-53205407	11q21	Rattus norvegicus resistin like alpha (Retnla), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652917-S	ILMN_47833	LOC362984	XM_347090.2	XM_347090.2		362984	62652917	XM_347090.2	LOC362984	XP_347091.2	ILMN_1349733	0003140292	S	446	GGGCAGCACTTGTGTTTGATTCTACCCTCTTTCTTCCGGTCGGTTCTGTC					PREDICTED: Rattus norvegicus hypothetical LOC362984 (LOC362984), mRNA.					
Rattus norvegicus	RefSeq	GI_61556856-S	ILMN_274889	TM7SF2	NM_001013071.1	NM_001013071.1		293688	61556856	NM_001013071.1	Tm7sf2	NP_001013089.1	ILMN_1358232	0003360500	S	1253	CGAGATGAGCAGCAGTGCCTGCGAAAGTATGGCCGTGCCTGGCAGGAATA	1	-	208700934-208700983	1q43	Rattus norvegicus transmembrane 7 superfamily member 2 (Tm7sf2), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: NADP+ + 4,4-dimethyl-5-alpha-cholesta-8,24-dien-3-beta-ol = NADPH + H+ + 4,4-dimethyl-5-alpha-cholesta-8,14,24-trien-3-beta-ol [goid 50613] [evidence ISS]	MGC108990	MGC108990
Rattus norvegicus	RefSeq	Rn.8313	ILMN_274889	TM7SF2	NM_001013071.1	NM_001013071.1		293688	61556856	NM_001013071.1	Tm7sf2	NP_001013089.1	ILMN_1530410	0000630484	S	38	TGTTTCCCTGATCGACTTTGTGAACCATTGTTTCCCGGCAAAGGAGAGAT	1	-	208705006-208705055	1q43	Rattus norvegicus transmembrane 7 superfamily member 2 (Tm7sf2), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: NADP+ + 4,4-dimethyl-5-alpha-cholesta-8,24-dien-3-beta-ol = NADPH + H+ + 4,4-dimethyl-5-alpha-cholesta-8,14,24-trien-3-beta-ol [goid 50613] [evidence ISS]	MGC108990	MGC108990
Rattus norvegicus	RefSeq	GI_47577072-S	ILMN_283450	OLR771	NM_001000610.1	NM_001000610.1		404799	47577072	NM_001000610.1	Olr771	NP_001000610.1	ILMN_2039921	0002850224	S	677	ATCAGAGTTCTAAGACTGGGGCATCTAAAGCCCTGTCCACATGCACTGCC	3	+	97238937-97238986	3q34	Rattus norvegicus olfactory receptor 771 (Olr771), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr771	Olr771
Rattus norvegicus	RefSeq	GI_56605743-S	ILMN_302529	RGD1308119	NM_001008333.1	NM_001008333.1		302032	56605743	NM_001008333.1	RGD1308119	NP_001008334.1	ILMN_1357643	0005550168	S	795	GATCTTTACTAAGGCTGATCCCAGGACCTTGCCCAGGATGTACGCTATAC	4	-	186585696-186585744:186585745-186585745	4q44	Rattus norvegicus similar to F-box protein FBL2 (RGD1308119), mRNA.				MGC105998	MGC105998
Rattus norvegicus	RefSeq	GI_62641817-S	ILMN_284058	OTUB1_PREDICTED	XM_001072480.1	XM_001072480.1		293705	109463457	XM_001072480.1	Otub1_predicted	XP_001072480.1	ILMN_1360532	0001570711	S	1387	AGTCCTGGGGTGAGAGGCTTATGGGGGGAGACTGGCCTAGAGTAGGTGGA				1q43	PREDICTED: Rattus norvegicus OTU domain, ubiquitin aldehyde binding 1 (predicted) (Otub1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644954-S	ILMN_57377	LOC362115	XM_342417.2	XM_342417.2		362115	62644954	XM_342417.2	LOC362115	XP_342418.2	ILMN_1359784	0005220091	S	3498	CAGGTCCCAAGTAGAAACTGCCACTACAAGGCCCCAGGATGAGGTCTCTG				3p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130404D14 (predicted) (LOC362115), mRNA.					
Rattus norvegicus	RefSeq	GI_34857194-S	ILMN_161821	LOC365769	XM_345201.1	XM_345201.1			34857194	XM_345201.1	LOC365769		ILMN_2039423	0003890446	S	1026	GAGCCAGCTTATTGTGGTGACAGGATTTCTGGGACTTCTCACGTTGTGGC					Rattus norvegicus similar to interleukin 21 (LOC365769), mRNA.					
Rattus norvegicus	RefSeq	GI_38454291-S	ILMN_278428	C11ORF8H	NM_198778.1	NM_198778.1		362185	38454291	NM_198778.1	C11orf8h	NP_942073.1	ILMN_1373221	0003390309	S	780	AGGCCAGTCTCTGCTGGACAAGTGGAACCTCATCCCTGAAGGCACCGACA	3	+	92364421-92364470	3q33	Rattus norvegicus putative C11orf8 homolog (human) (C11orf8h), mRNA.				C11orf8; unknown	C11orf8; unknown
Rattus norvegicus	RefSeq	GI_62658911-S	ILMN_54834	LOC363925	XM_344113.2	XM_344113.2		363925	62658911	XM_344113.2	LOC363925	XP_344114.2	ILMN_1350721	0004590706	S	2584	GCGCTGGGGGCTTGTTCACCTTTATCGACCAGATGTTCGCAGCTTTTCCC				12q16	PREDICTED: Rattus norvegicus similar to Myosin regulatory light chain 2, ventricular/cardiac muscle isoform (MLC-2) (MLC-2v) (LOC363925), mRNA.					
Rattus norvegicus	RefSeq	GI_48675843-S	ILMN_282194	PPP2CA	NM_017039.2	NM_017039.2		24672	48675843	NM_017039.2	Ppp2ca	NP_058735.1	ILMN_1358097	0001990168	S	1685	CAGAACTGTCTCCCTCCTGTAAGATGATGTACTGCACAAGTCACCGCAGT	10	+	37640803-37640852	10q22	Rattus norvegicus protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform (Ppp2ca), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence ISS]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence TAS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Pp2a1	Pp2a1
Rattus norvegicus	RefSeq	GI_62663316-S	ILMN_58612	LOC498717	XM_579861.1	XM_579861.1		498717	62663316	XM_579861.1	LOC498717	XP_579861.1	ILMN_1359005	0003990707	S	68	CTGTCAAGGTGGGGTGTGTGGAGGGAAACACAGGAGAGGGAGAAACGAGC					PREDICTED: Rattus norvegicus LOC498717 (LOC498717), mRNA.					
Rattus norvegicus	RefSeq	GI_62339352-S	ILMN_296472	RNF113A1	NM_001014791.1	NM_001014791.1		313450	62339352	NM_001014791.1	Rnf113a1	NP_001014791.1	ILMN_1360461	0002120537	S	1016	AGCAGAGGGTGCTGCCTCTGATTTCCTAGAAGACCCAGAGGAGAGTCCAG	X	-	7725234-7725283	Xq11	Rattus norvegicus ring finger protein 113A1 (Rnf113a1), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652725-S	ILMN_293289	LOC685357	XM_001063469.1	XM_001063469.1		685357	109480995	XM_001063469.1	LOC685357	XP_001063469.1	ILMN_1356226	0004280215	S	1330	GATGACCTCTTGGACCGGCCAGGCAATCCCGCAGCATCATCAGACTACTG	7	-	117241259-117241308	7q34	PREDICTED: Rattus norvegicus similar to BAI1-associated protein 2-like 2 (LOC685357), mRNA.					
Rattus norvegicus	RefSeq	GI_41235792-I	ILMN_296132	PCDHA11	NM_199486.2	NM_199486.2		394223	41235792	NM_199486.2	Pcdha11	NP_955780.1	ILMN_1376055	0006620605	I	2030	CAAAGGCCTCTTCACGGGTGTTGGCGGGTACAGCAGCCTCTGAGTCACCT	18	+	29730632-29730681	18p11	Rattus norvegicus protocadherin alpha 11 (Pcdha11), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47058997-S	ILMN_58619	TOMM22	NM_212514.2	NM_212514.2		300075	71534292	NM_212514.2	Tomm22	NP_997679.1	ILMN_1358109	0007040746	S	65	GAATTGGTCCCGAAAGCCGAGGCAGAGAAAGCTGAGGAGGACCTGGAAGA	7	+	117913275-117913324	7q34	Rattus norvegicus translocase of outer mitochondrial membrane 22 homolog (yeast) (Tomm22), nuclear gene encoding mitochondrial protein, mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	TOM22; rTOM22	TOM22; rTOM22
Rattus norvegicus	RefSeq	GI_20304124-S	ILMN_161713	EIF2B5	NM_138866.2	NM_138866.2		192234	55741627	NM_138866.2	Eif2b5	NP_620221.2	ILMN_2039669	0006560082	S	2407	CCCTGCAGTTGGGGGTTGGCCAGAGGAAGCACTTTGTGTTTCAGCTTTCC	11	-	82634663-82634712	11q23	Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 5 epsilon (Eif2b5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence TAS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence IDA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IDA]; The process aimed at the progression of an astrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function [goid 14002] [evidence ISS]; The process aimed at the progression of an astrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function [goid 14002] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress [goid 32057] [evidence IMP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of translational initiation [goid 45948] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence TAS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IMP]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation [goid 31369] [evidence IMP]; Interacting selectively with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation [goid 31369] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650541-S	ILMN_280730	RGD1566054_PREDICTED	XM_001071807.1	XM_001071807.1		314013	109479120	XM_001071807.1	RGD1566054_predicted	XP_001071807.1	ILMN_1350244	0002470390	S	2631	TCTCAGACCCACTGACCGGCCTACCATGCAGTTCCACAACACTGCCCGTT				6q16	PREDICTED: Rattus norvegicus similar to Ttc15 protein (predicted) (RGD1566054_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19526760-I	ILMN_301231	CAV1	NM_031556.1	NM_031556.1		25404	19526760	NM_031556.1	Cav1	NP_113744.1	ILMN_1376114	0005910524	S	7	GGGGGTAAATACGTAGACTCCGAGGGACATCTCTACACTGTTCCCATCCG	4	+	42956147-42956170:42957597-42957622	4q21	Rattus norvegicus caveolin, caveolae protein 1 (Cav1), transcript variant 1, mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence TAS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the cytokine and chemokine mediated signaling pathway [goid 1960] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 19217] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence ISS]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell differentiation [goid 30857] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence IMP]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence IMP]; A homeostatic process involved in the maintenance of an internal equilibrium of nitric oxide within an organism or cell [goid 33484] [evidence ISS]; A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure [goid 42310] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein [goid 42524] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45019] [evidence ISS]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of endocytosis [goid 45807] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence ISS]; The addition of tubulin heterodimers to one or both ends of a microtubule [goid 46785] [evidence IMP]; Any process that activates, maintains or increases the rate activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal [goid 48554] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins [goid 52547] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions [goid 55074] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vesicle [goid 16050] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence IEA]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IMP]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Increases the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 16504] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence IPI]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IMP]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence ISS]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IEA]	Cav1; caveolin 1	Cav1; caveolin 1
Rattus norvegicus	RefSeq	GI_62641508	ILMN_66672	GCNT1	XM_579453.1	XM_579453.1		64043	62641508	XM_579453.1	Gcnt1	XP_579453.1	ILMN_1649912	0004730156	S	4222	GCGCCCAATGCCTGCCACAGGGCTTGTACAGTGTCTGTTTACTGTGACTC				1q43	PREDICTED: Rattus norvegicus glucosaminyl (N-acetyl) transferase 1, core 2 (Gcnt1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,3-N-acetyl-D-galactosaminyl-R = UDP + beta-D-galactosyl-1,3-(N-acetyl-beta-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R [goid 3829] [evidence IDA]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928749	ILMN_63801	NFYB	NM_031553.2	NM_031553.2		25336	59709469	NM_031553.2	Nfyb	NP_113741.1	ILMN_1651070	0003360364	S	626	TCCAGAAGTTCAGAGAGGCCATGAAGGGAGAGAAGGGCATTGGTGGGGCC	7	+	23201859-23201875:23202866-23202898	7q13	Rattus norvegicus nuclear transcription factor-Y beta (Nfyb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; in Saccharomyces it activates the transcription of genes in response to growth in a nonfermentable carbon source; consists of four known subunits: HAP2, HAP3, HAP4 and HAP5 [goid 16602] [evidence IEA]; A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; in Saccharomyces it activates the transcription of genes in response to growth in a nonfermentable carbon source; consists of four known subunits: HAP2, HAP3, HAP4 and HAP5 [goid 16602] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	CBFB; MGC108654; Nfya; CBF-B	CBFB; MGC108654; Nfya; CBF-B
Rattus norvegicus	RefSeq	GI_62639214-I	ILMN_66669	PLD3_PREDICTED	XM_574402.1	XM_574402.1		361527	62639214	XM_574402.1	Pld3_predicted	XP_574402.1	ILMN_1375439	0004570670	S	73	AAGAAGGTTACTCAGGACCACCCCTTCCCCTGTTGCGGGGAGTCAGCCGA				1q21	PREDICTED: Rattus norvegicus phospholipase D3 (predicted) (Pld3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657796-S	ILMN_48809	LRRIQ2_PREDICTED	XM_221540.3	XM_221540.3		304007	109493071	XM_221540.3	Lrriq2_predicted	XP_221540.2	ILMN_1354210	0003870672	S	2412	GCGTCTCCTAGCTTGTTCTCCGGAAAGGTTGGGTGCCTCTGACAGTGAGG	11	+	45686685-45686734	11q12	PREDICTED: Rattus norvegicus leucine-rich repeats and IQ motif containing 2 (predicted) (Lrriq2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577834-S	ILMN_274126	OLR1202	NM_001000817.1	NM_001000817.1		405105	47577834	NM_001000817.1	Olr1202	NP_001000817.1	ILMN_1352108	0000430333	S	754	GGGTCAGGGGCGTTCACCTATTTAACCACGTCTTTCCCTGGGTCAATGAA	8	+	39307108-39307157	8q21	Rattus norvegicus olfactory receptor 1202 (Olr1202), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1202	Olr1202
Rattus norvegicus	RefSeq	GI_62661684-S	ILMN_55790	R3HCC1_PREDICTED	XM_341347.3	XM_341347.3		361064	109501847	XM_341347.3	R3hcc1_predicted	XP_341348.3	ILMN_1373039	0005390332	S	1555	GCCAAGGATTTCTCCGTGCTCAAGATCCGGCCACTCACACAGGGGACCAA	15	-	50073706-50073755	15p11	PREDICTED: Rattus norvegicus R3H domain and coiled-coil containing 1 (predicted) (R3hcc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639615-S	ILMN_268096	KLK13_PREDICTED	XM_001080409.1	XM_001080409.1		292848	109461830	XM_001080409.1	Klk13_predicted	XP_001080409.1	ILMN_1364047	0004280722	S	872	CGGCATCATCTCATGGGGGGATTTTCCATGTGGACAGCCCAACCGACCTG				1q22	PREDICTED: Rattus norvegicus kallikrein 13 (predicted) (Klk13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27731310-S	ILMN_268096	KLK13_PREDICTED	XM_001080409.1	XM_001080409.1		292848	109461830	XM_001080409.1	Klk13_predicted	XP_001080409.1	ILMN_2039196	0004880670	S	903	GGACAGCCCAACCGACCTGGCGTTTACACACGAGTCTCAAAATACCTGCG				1q22	PREDICTED: Rattus norvegicus kallikrein 13 (predicted) (Klk13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090374-S	ILMN_292202	ISG20L2	NM_001007741.1	NM_001007741.1		361977	56090374	NM_001007741.1	Isg20l2	NP_001007742.1	ILMN_1356599	0002320333	S	1511	CCCAGGGAGACACATGCAGTAAACCAACCCACAGTTCTGCCAGCTTCTCA	2	+	180018642-180018691	2q34	Rattus norvegicus interferon stimulated exonuclease gene 20-like 2 (Isg20l2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94465	MGC94465
Rattus norvegicus	RefSeq	GI_8394508-S	ILMN_272879	UMOD	NM_017082.1	NM_017082.1		25128	8394508	NM_017082.1	Umod	NP_058778.1	ILMN_1363631	0001740671	S	1847	CACGACAAGGTGTCCAGGCCTCAGTGTCCAAGGCTGCTTCCAGCAACTTG	1	-	177730969-177731010:177731707-177731714	1q35	Rattus norvegicus uromodulin (Umod), mRNA.	A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence TAS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	THP	THP
Rattus norvegicus	RefSeq	GI_62655268-S	ILMN_53404	LOC501170	XM_576597.1	XM_576597.1		501170	62655268	XM_576597.1	LOC501170	XP_576597.1	ILMN_1356140	0001240088	S	740	GTGGCAATACCCACGGTGGCTCCAGGCGATTCCGATTAATGGCTGCAGAC					PREDICTED: Rattus norvegicus similar to adaptor-related protein complex AP-1, sigma 3 (LOC501170), mRNA.					
Rattus norvegicus	RefSeq	GI_62638620-S	ILMN_58729	LOC502244	XM_577704.1	XM_577704.1		502244	62638620	XM_577704.1	LOC502244	XP_577704.1	ILMN_1374426	0000130047	S	61	AGTCAGTACACAGCATCATTCTTAACACCACACAGTCAGTGCACAGCCGA				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502244), mRNA.					
Rattus norvegicus	RefSeq	GI_47576636-S	ILMN_268152	OLR1683	NM_001000269.1	NM_001000269.1		294150	47576636	NM_001000269.1	Olr1683	NP_001000269.1	ILMN_1351594	0001240138	S	408	GAATCAGCGTAAATGCCTCCTGTTAGTGTCTACTGTGTGGCTGACTGGAA	20	-	335233-335282	20p12	Rattus norvegicus olfactory receptor 1683 (Olr1683), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1683	Olr1683
Rattus norvegicus	RefSeq	GI_52138612-S	ILMN_284417	SSB	NM_031119.2	NM_031119.2		81783	52138612	NM_031119.2	Ssb	NP_112381.2	ILMN_1360596	0001410358	S	1102	CATGCAGCCCGCAGATTTAAAGGAAGTCATGTTTTTACAGCAGCTCGCAG	3	+	52009685-52009688:52009784-52009829	3q21	Rattus norvegicus Sjogren syndrome antigen B (Ssb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]; The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IMP]; Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]; Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC93380	MGC93380
Rattus norvegicus	RefSeq	GI_62639440-S	ILMN_55345	LOC502312	XM_577776.1	XM_577776.1		502312	62639440	XM_577776.1	LOC502312	XP_577776.1	ILMN_1366272	0001230731	S	2754	CACAATGTCGAGCAGCCCAAGGACGTGATGAGTGCGGAAAAATCATCGCC					PREDICTED: Rattus norvegicus similar to 6330581L23Rik protein (LOC502312), mRNA.					
Rattus norvegicus	RefSeq	GI_62657179-S	ILMN_47843	LYZL6_PREDICTED	XM_213497.3	XM_213497.3		287751	109489149	XM_213497.3	Lyzl6_predicted	XP_213497.3	ILMN_1366669	0000450671	S	462	GATTGGAGGTTGCACTGTTTAGGACGGCCACTCTCCTACTGGCTGACGGG	10	-	92787661-92787710	10q32.1	PREDICTED: Rattus norvegicus lysozyme-like 6 (predicted) (Lyzl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646583-S	ILMN_47731	LOC499960	XM_575309.1	XM_575309.1		499960	62646583	XM_575309.1	LOC499960	XP_575309.1	ILMN_1352033	0000060059	S	732	GGGAGAGAAAATCAGGATGGAGCGCTGAATGTAGAACGAAGGAGACCGTC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499960), mRNA.					
Rattus norvegicus	RefSeq	GI_62652961	ILMN_49856	LOC300108	XM_235538.3	XM_235538.3		300108	62652961	XM_235538.3	LOC300108	XP_235538.3	ILMN_1650608	0006200286	S	2036	TTGCCACCTTCGCTTCACTTCGCATGGACCACACCCGAAACAACGGCACC				7q34	PREDICTED: Rattus norvegicus similar to GS2 like (predicted) (LOC300108), mRNA.					
Rattus norvegicus	RefSeq	GI_62651115-S	ILMN_47925	ADCK1_PREDICTED	XM_345709.3	XM_345709.3		366698	109478580	XM_345709.3	Adck1_predicted	XP_345710.3	ILMN_1363187	0002370008	S	1445	GCTCATCCTGAAGACCAACGATCTACTCCGCAGCATCGAGACCACCCTGG	6	+	111990119-111990168	6q31	PREDICTED: Rattus norvegicus aarF domain containing kinase 1 (predicted) (Adck1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742816-S	ILMN_275073	BCAP29	NM_001006980.1	NM_001006980.1		298943	55742816	NM_001006980.1	Bcap29	NP_001006981.1	ILMN_1368917	0006940725	S	1416	ACTGTCACGACACTGAGTTGAACCTATGTTGCACTGTGGAGTTCTCCACT	6	-	49464629-49464678	6q16	Rattus norvegicus B-cell receptor-associated protein 29 (Bcap29), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC93926	MGC93926
Rattus norvegicus	RefSeq	GI_62646838-S	ILMN_60977	RGD1564980_PREDICTED	XM_575373.2	XM_575373.2		500019	109471723	XM_575373.2	RGD1564980_predicted	XP_575373.1	ILMN_1353357	0001940463	S	11	TCTTCCGGTCCCAGGCACTGCAGGAGCCGCGGCTTACCATGCAGACATGA	4	-	30308010-30308014:30308015-30308059	4q13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1564980_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650867-S	ILMN_58485	RGD1562028_PREDICTED	XM_578547.2	XM_578547.2		503027	109478243	XM_578547.2	RGD1562028_predicted	XP_578547.2	ILMN_1362190	0006350300	S	2366	CTGGACTCCATTCACGTGACGCAGCTGGAGAGAGACACTGTTCTGGTGTG	6	-	91894429-91894478	6q24	PREDICTED: Rattus norvegicus similar to mitogen-activated protein kinase kinase kinase kinase 5 isoform 2 (predicted) (RGD1562028_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639802-S	ILMN_65915	LOC308637	XM_218679.3	XM_218679.3		308637	62639802	XM_218679.3	LOC308637	XP_218679.3	ILMN_1370912	0000430619	S	3632	CCTGTCAGTGTTCCTGATAGCTGACTTTCCCAACCACACAGTGCCCATGG				1q22	PREDICTED: Rattus norvegicus similar to integral membrane protein GDD1 (LOC308637), mRNA.					
Rattus norvegicus	RefSeq	GI_62656002-S	ILMN_66243	LOC497893	XM_573077.1	XM_573077.1		497893	62656002	XM_573077.1	LOC497893	XP_573077.1	ILMN_1359036	0002850471	S	406	GAAACACCGGAGGAAAAAATAGGTATGCCCCGGAGGATGAAGTACAAGTC					PREDICTED: Rattus norvegicus similar to LRRGT00094 (LOC497893), mRNA.					
Rattus norvegicus	RefSeq	GI_62666404-S	ILMN_270428	THOC2_PREDICTED	XM_001058768.1	XM_001058768.1		313308	109512523	XM_001058768.1	Thoc2_predicted	XP_001058768.1	ILMN_1369191	0005670333	S	4486	GACCGTGAAGTGCCACCGGACATAACAAAGAGGCGGAAAGAGGAGAATGG				Xq11	PREDICTED: Rattus norvegicus THO complex 2 (predicted) (Thoc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758169-S	ILMN_279458	FEN1	NM_053430.1	NM_053430.1		84490	16758169	NM_053430.1	Fen1	NP_445882.1	ILMN_1353164	0003940180	S	1958	GGTTTTGTGCCTCCCCTCTCCAGTGTTGGGAATTGAACCCAGGGCAAAGG	1	-	212688282-212688331	1q43	Rattus norvegicus flap structure-specific endonuclease 1 (Fen1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters [goid 4523] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters [goid 4523] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence NAS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end [goid 8409] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end [goid 8409] [evidence ISS]; Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis [goid 17108] [evidence IEA]; Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis [goid 17108] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence ISS]; Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis [goid 48256] [evidence ISS]	MGC94425	MGC94425
Rattus norvegicus	RefSeq	GI_62649862-S	ILMN_51350	RGD1564482_PREDICTED	XM_580084.2	XM_580084.2		500568	109475671	XM_580084.2	RGD1564482_predicted	XP_580084.2	ILMN_1366609	0006180095	S	315	GTGAGAAGAGCAGTTGGGCTTTGCAGGAGGAGAGCAGGCCACAGAGGAGT	5	-	155026618-155026667	5q36	PREDICTED: Rattus norvegicus RGD1564482 (predicted) (RGD1564482_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662559-S	ILMN_58245	LOC502075	XM_577509.1	XM_577509.1		502075	62662559	XM_577509.1	LOC502075	XP_577509.1	ILMN_1363058	0002940524	S	1172	CCCCAGGATCAAAAGAGAGCCCATCTCCCTAACGGTAGCCATACTCCTGG					PREDICTED: Rattus norvegicus similar to envelope protein (LOC502075), mRNA.					
Rattus norvegicus	RefSeq	GI_62662856-S	ILMN_51381	ANK1_PREDICTED	XM_240464.3	XM_240464.3		306570	62662856	XM_240464.3	Ank1_predicted	XP_240464.3	ILMN_1348865	0006180438	S	7760	CGCGCTCCCGTTGCTAGTAGGAGCTGTTTTAGGAGGAGTTTGGGGTCTCC				16q12.5	PREDICTED: Rattus norvegicus ankyrin 1, erythroid (predicted) (Ank1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645429-S	ILMN_271231	RGD1564664_PREDICTED	XM_001078667.1	XM_001078667.1		499839	109470355	XM_001078667.1	RGD1564664_predicted	XP_001078667.1	ILMN_1357605	0000050309	S	948	TTTTAACTCTTTCCCAGTACGAACTCTGCGGTGAGCGTGCGCGGGAGGCG				3q24	PREDICTED: Rattus norvegicus similar to LOC387763 protein (predicted) (RGD1564664_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394309-S	ILMN_291516	SLC4A2	NM_017048.1	NM_017048.1		24780	8394309	NM_017048.1	Slc4a2	NP_058744.1	ILMN_1354511	0002760215	S	3860	GTGTGAAGGTGTGGACGAGTACAACGAGATGCCCATGCCTGTGTAGCTGC	4	-	6100926-6100934:6100935-6100975	4q11	Rattus norvegicus solute carrier family 4 (anion exchanger), member 2 (Slc4a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEP]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	 [goid 5452] [evidence IEA]	Ae2; Aep2	Ae2; Aep2
Rattus norvegicus	RefSeq	GI_62655230-S	ILMN_266487	ZFAND2B	NM_001025745.1	NM_001025745.1		363253	71043781	NM_001025745.1	Zfand2b	NP_001020916.1	ILMN_1370076	0005390670	S	1162	GGGGCCTTGGTAGGTGCTAACCAGACTCAATCCCCACAGCCTCTTACATC	9	+	74454565-74454614	9q33	Rattus norvegicus zinc finger, AN1 type domain 2B (Zfand2b), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1306260; MGC116391	RGD1306260; MGC116391
Rattus norvegicus	RefSeq	GI_62644507-S	ILMN_281820	HS2ST1	XM_001079125.1	XM_001079125.1		292155	109467746	XM_001079125.1	Hs2st1	XP_001079125.1	ILMN_1363349	0007050458	S	1495	CACACCCGTGGAGGTTAGTGGGAAGGCGAGTACCATTCCAGAAGAGGTTC				2q44	PREDICTED: Rattus norvegicus heparan sulfate 2-O-sulfotransferase 1 (Hs2st1), mRNA.		The chemical reactions and pathways resulting in the formation of polysaccharide chain component of heparan sulfate proteoglycan [goid 15014] [evidence ISS]; The chemical reactions and pathways involving heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells. They are similar to heparan sulfates but are of somewhat higher average Mr (6000-20000) and contain fewer N-acetyl groups and more N-sulfate and O-sulfate groups; they may be attached in the same manner to protein, forming proteoglycans. They consist predominantly of alternating alpha1->4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 30202] [evidence ISS]	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + heparan sulfate = adenosine 3',5'-bisphosphate + heparan sulfate 2-O-sulfate; results in 2-O-sulfation of iduronic acid residues in heparan sulfate [goid 4394] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27690028-S	ILMN_49454	DDX42_PREDICTED	XM_221037.3	XM_221037.3		303607	109489176	XM_221037.3	Ddx42_predicted	XP_221037.2	ILMN_2040517	0004570224	S	2501	ATTGGAGCCCAAGGAGTCAACAACACAGCTTCAGGGAGTAACAGCCGTGA	10	+	95642688-95642737	10q32.1	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) (Ddx42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090563-S	ILMN_291411	GALM	NM_001007704.1	NM_001007704.1		313843	56090563	NM_001007704.1	Galm	NP_001007705.1	ILMN_1363661	0004010072	S	1993	ACTTTGCACTAGAAGTAGACGCTCCCCTGAGATGAAGTGGGTGGAGGCTC	6	+	3078547-3078596	6q11	Rattus norvegicus galactose mutarotase (aldose 1-epimerase) (Galm), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose [goid 4034] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]	MGC93738	MGC93738
Rattus norvegicus	RefSeq	GI_62643117-S	ILMN_269673	LOC683212	XR_008208.1	XR_008208.1		683212	109466252	XR_008208.1	LOC683212		ILMN_1364611	0000940088	S	1340	GGGAACCCCCTGGGACTGAGGGACCAATAAAAGTTGAGAATTCACTGGAA					PREDICTED: Rattus norvegicus similar to keratin complex 1, acidic, gene 18 (LOC683212), mRNA.					
Rattus norvegicus	RefSeq	GI_62658760-S	ILMN_268357	LOC368084	XM_001071583.1	XM_001071583.1		368084	109497096	XM_001071583.1	LOC368084	XP_001071583.1	ILMN_1360063	0004060047	S	57	CCAGAACACAGCGGACCGCCAGAGCTGTTTTATGACCAGAATGAAGCCCG				12q12	PREDICTED: Rattus norvegicus similar to Putative methyltransferase WBSCR22 (Williams-Beuren syndrome chromosome region 22 protein homolog) (LOC368084), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718328-S	ILMN_54090	LOC501365	XM_576778.1	XM_576778.1		501365	62718328	XM_576778.1	LOC501365	XP_576778.1	ILMN_1351909	0005290551	S	937	ACTACTGTCCAGCACTCTAGGGACGCTCACCTGTAACTGGACAAATGCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC078986 (LOC501365), mRNA.					
Rattus norvegicus	RefSeq	GI_62665252-S	ILMN_62528	LOC498948	XM_574237.1	XM_574237.1		498948	62665252	XM_574237.1	LOC498948	XP_574237.1	ILMN_1367930	0004540524	S	1614	CCAGAGCACATACAGGGAAAGAGCAGCGAAGAGGGAGAGAGTGACAACCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498948), mRNA.					
Rattus norvegicus	RefSeq	GI_62650763-S	ILMN_270356	LOC687840	XM_001080312.1	XM_001080312.1		687840	109479468	XM_001080312.1	LOC687840	XP_001080312.1	ILMN_1354166	0002120398	S	42	AAGCCAAACCCAAGCTCTACTACTTTCAAGGCAGGGGAAGGATGGAGTCA					PREDICTED: Rattus norvegicus similar to Glutathione S-transferase alpha-4 (Glutathione S-transferase Yk) (GST Yk) (GST 8-8) (GST K) (GST A4-4) (LOC687840), mRNA.					
Rattus norvegicus	RefSeq	GI_8394078-S	ILMN_280876	PSMB2	NM_017284.1	NM_017284.1		29675	8394078	NM_017284.1	Psmb2	NP_058980.1	ILMN_1353270	0001230446	S	583	GCCCACCTTCAGCGTTCGGGTCATTGACAAAGATGGCATCCACAATCTGG	5	+	146121769-146121818	5q36	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 2 (Psmb2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650160-S	ILMN_273139	RGD1565591_PREDICTED	XM_001077382.1	XM_001077382.1		313757	109477791	XM_001077382.1	RGD1565591_predicted	XP_001077382.1	ILMN_1352908	0003450092	S	3849	AACTGGAGACTGCTAAGCCCTGATGTCTGGTGCCGAGGTCGGTCGTCTGC				5q36	PREDICTED: Rattus norvegicus similar to Ski protein (predicted) (RGD1565591_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655743-S	ILMN_68999	ZNF213_PREDICTED	XM_237754.3	XM_237754.3		287094	62655743	XM_237754.3	Znf213_predicted	XP_237754.3	ILMN_1358616	0006860736	S	2874	CTTACCGTGTATGCCGCTGCTGAGGGCTGTGTGGCCTATCGGGACGAAAA				10q12	PREDICTED: Rattus norvegicus zinc finger protein 213 (predicted) (Znf213_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638554-S	ILMN_55431	RNASET2_PREDICTED	XM_214769.4	XM_214769.4		292306	109457773	XM_214769.4	Rnaset2_predicted	XP_214769.4	ILMN_1359195	0002320047	S	867	GACGGCCCGATCTTCTATCCTCCACCCAAGTCCCAACACTGATGTTCACA	1	+	47244523-47244564:47244565-47244572	1q11	PREDICTED: Rattus norvegicus ribonuclease T2 (predicted) (Rnaset2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643699-S	ILMN_276472	RGD1311955_PREDICTED	XM_001065975.1	XM_001065975.1		295161	109466800	XM_001065975.1	RGD1311955_predicted	XP_001065975.1	ILMN_1356156	0006510086	S	3877	GGGGCTGGCACCTCCTGTCACTCATACTCAGGACCCTATCCCTAACTCCT				2q34	PREDICTED: Rattus norvegicus similar to CG32384-PA (predicted) (RGD1311955_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742694-I	ILMN_267921	EPB4.1L1	NM_172090.1	NM_172090.1		59317	25742694	NM_172090.1	Epb4.1l1	NP_742087.1	ILMN_1375856	0002480528	I	6022	CACCTCAGTGCTCCGTGCTGTATGCGTGTGCTCTCTGTTCTTGTATACTC	3	+	146944525-146944574	3q42	Rattus norvegicus erythrocyte protein band 4.1-like 1 (Epb4.1l1), transcript variant 1, mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	4.1N	4.1N
Rattus norvegicus	RefSeq	GI_11067406-A	ILMN_267921	EPB4.1L1	NM_172090.1	NM_172090.1		59317	25742694	NM_172090.1	Epb4.1l1	NP_742087.1	ILMN_1376582	0006590397	A	3558	GGTCCTGCCGAGGACCACTGCAGATAACTCTCGTTGGAAGGAGAAGAAGC	3	+	146942061-146942110	3q42	Rattus norvegicus erythrocyte protein band 4.1-like 1 (Epb4.1l1), transcript variant 1, mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	4.1N	4.1N
Rattus norvegicus	RefSeq	GI_52421335-I	ILMN_70061	RBP1	NM_012733.4	NM_012733.4		25056	77416367	NM_012733.4	Rbp1	NP_036865.1	ILMN_1375320	0001780148	I	321	CAGGCATAGATGACCGCAAGTGCATGACCACAGTGAGCTGGGATGGTGAC	8	+	103606573-103606599:103625505-103625527	8q31	Rattus norvegicus retinol binding protein 1, cellular (Rbp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence IEA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Interacting selectively with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina [goid 16918] [evidence IEA]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644210-S	ILMN_64705	LOC499692	XM_575017.1	XM_575017.1		499692	62644210	XM_575017.1	LOC499692	XP_575017.1	ILMN_1349097	0006550438	S	1351	CCAGCCCTACAAAGGATAATAAATGGTAAAGCCCAACATAAGGAGGCAAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499692), mRNA.					
Rattus norvegicus	RefSeq	GI_46048534-S	ILMN_264351	CBR1	NM_019170.2	NM_019170.2		29224	46048534	NM_019170.2	Cbr1	NP_062043.1	ILMN_1367105	0001770504	S	435	AACCCCAAGGCAGAGTGGTGAATGTATCAAGCAGCGTGAGTCTCAGGGCC	11	+	33788861-33788869:33789775-33789815	11q11	Rattus norvegicus carbonyl reductase 1 (Cbr1), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-CHOH-R' + NADP+ = R-CO-R' + NADPH + H+ [goid 4090] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Cbr; MGC124927	Cbr; MGC124927
Rattus norvegicus	RefSeq	GI_62646929-S	ILMN_65232	RGD1560157_PREDICTED	XM_575412.2	XM_575412.2		500057	109471809	XM_575412.2	RGD1560157_predicted	XP_575412.1	ILMN_1360658	0003060092	S	3725	AGGTTCACAGCTGTACTTAAAATGGACCCTGTCCATCTGTGTCCTTTTTG	4	-	55035379-55035428	4q22	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC168850 (predicted) (RGD1560157_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717930-S	ILMN_268068	LOC294557	XM_001054117.1	XM_001054117.1		294557	109510068	XM_001054117.1	LOC294557	XP_001054117.1	ILMN_1350107	0006040168	S	2344	TGCCCAGAGAGAGGTACCGTGTGGTGGTCTCCTACCCTCCACAGAGTGAA					PREDICTED: Rattus norvegicus similar to SH3 domain containing ring finger 1, transcript variant 2 (LOC294557), mRNA.					
Rattus norvegicus	RefSeq	GI_62660594-S	ILMN_60733	HBLD1_PREDICTED	XM_344252.2	XM_344252.2		364178	62660594	XM_344252.2	Hbld1_predicted	XP_344253.2	ILMN_1351686	0002350142	S	68	GAGCCAGAACAGCCATGGGAACCAGACTATGGATCTGCAGAACACGACCC				14q21	PREDICTED: Rattus norvegicus HESB like domain containing 1 (predicted) (Hbld1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663188-S	ILMN_274818	RGD1565691_PREDICTED	XM_001068067.1	XM_001068067.1		498698	109505444	XM_001068067.1	RGD1565691_predicted	XP_001068067.1	ILMN_1358458	0004150092	S	229	GCAACCTATTTCCCAGGACTCAAGCTGGCCACGGAGCATCCATTCTGCCG					PREDICTED: Rattus norvegicus RGD1565691 (predicted) (RGD1565691_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649373-S	ILMN_48465	LOC502979	XM_578485.1	XM_578485.1		502979	62649373	XM_578485.1	LOC502979	XP_578485.1	ILMN_1349834	0005690632	S	828	CAGGGAGCCCGTGATGAGCCTGAGGAAGTTGGGTTCCAAAGAACTGTGGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210012G02 (LOC502979), mRNA.					
Rattus norvegicus	RefSeq	GI_51036654-S	ILMN_289895	SERPINA1	NM_022519.2	NM_022519.2		24648	51036654	NM_022519.2	Serpina1	NP_071964.2	ILMN_1360693	0003170026	S	1296	GCCAGGCTGTGCATAAGGCTGTGCTGACCTTAGATGAGAGGGGAACAGAG	6	-	127998850-127998895:127999724-127999727	6q32	Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 (Serpina1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methanol stimulus [goid 33986] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triglyceride stimulus [goid 34014] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chromate stimulus [goid 46687] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of the serine endopeptidase trypsin [goid 30304] [evidence IDA]	AAT; Pi; Spi1	AAT; Pi; Spi1
Rattus norvegicus	RefSeq	GI_62078476-S	ILMN_298238	TMEM183A	NM_001013871.1	NM_001013871.1		289034	62078476	NM_001013871.1	Tmem183a	NP_001013893.1	ILMN_1362515	0006100500	S	1226	GTTTGGAGGGGGCAGCTGGATCGTGTAGCTGATTAGCGATGCACAGGCTG	13	-	47303948-47303997	13q13	Rattus norvegicus transmembrane protein 183A (Tmem183a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62651511-S	ILMN_67677	LOC503077	XM_578597.1	XM_578597.1		503077	62651511	XM_578597.1	LOC503077	XP_578597.1	ILMN_1368259	0001570180	S	991	TTTACAGGGATGCTAAGGACCAGGAGAGGGCAGTGAAGACCAACAAGGAC				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy-chain V region precursor (LOC503077), mRNA.					
Rattus norvegicus	RefSeq	GI_62648181-S	ILMN_56398	RAD51AP1_PREDICTED	XM_232364.4	XM_232364.4		312721	109472655	XM_232364.4	Rad51ap1_predicted	XP_232364.4	ILMN_1351251	0005390131	S	1685	CCTCTGAGACAAGCAAGGACAAGACTGAAGAGCACCAGGCCAGCAAAGGC	4	-	163266215-163266264	4q42	PREDICTED: Rattus norvegicus RAD51 associated protein 1 (predicted) (Rad51ap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646505-S	ILMN_66116	LOC311710	XM_230955.3	XM_230955.3		311710	62646505	XM_230955.3	LOC311710	XP_230955.3	ILMN_1348888	0001240739	S	5893	ACACGCATCCAACCATCGTATGCCCACAATACGCCCGGACTTGCACACAC				3q43	PREDICTED: Rattus norvegicus similar to R-cadherin (LOC311710), mRNA.					
Rattus norvegicus	RefSeq	GI_62662063-S	ILMN_287267	A2LD1	NM_001025634.1	NM_001025634.1		290500	71043747	NM_001025634.1	A2ld1	NP_001020805.1	ILMN_1357910	0002370079	S	829	AAACACTCTAGGCTGAGTCCCCTAAACGGCAGTTACAGAGTACCTGGTGC	15	-	108030225-108030274	15q25	Rattus norvegicus AIG2-like domain 1 (A2ld1), mRNA.				MGC112665	MGC112665
Rattus norvegicus	RefSeq	GI_34878333-S	ILMN_57597	LOC367350	XM_346102.1	XM_346102.1		367350	34878333	XM_346102.1	LOC367350	XP_346103.1	ILMN_1357341	0002650373	S	183	GACTCAGATGTGGAAGCTGGGAAAGAAGTAGGTCAATGTGCCCTTGGTTG					PREDICTED: Rattus norvegicus similar to hypothetical protein D430020F16 (LOC367350), mRNA.					
Rattus norvegicus	RefSeq	GI_34852454	ILMN_48239	RGD1560350_PREDICTED	XM_345096.2	XM_345096.2		365554	109509366	XM_345096.2	RGD1560350_predicted	XP_345097.2	ILMN_1650733	0003870014	S	69	GGGCCGTGCAGTTATCGTCACACAGAAGAGAGCACCTGTCAAATTACTGG	20	+	17488011-17488060	20p11	PREDICTED: Rattus norvegicus similar to proteasome subunit iota (predicted) (RGD1560350_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658140-S	ILMN_287830	EPHB3_PREDICTED	XM_001059403.1	XM_001059403.1		287989	109494643	XM_001059403.1	Ephb3_predicted	XP_001059403.1	ILMN_1369948	0004920538	S	3792	TCCCCAGGAAGTGGAGGAGGGGACTCTGGGAATGGGGAAATATGGTGCCC				11q23	PREDICTED: Rattus norvegicus Eph receptor B3 (predicted) (Ephb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647450-S	ILMN_67403	LOC500194	XM_575546.1	XM_575546.1		500194	62647450	XM_575546.1	LOC500194	XP_575546.1	ILMN_1362941	0002120278	S	211	TCTACAAAGCATCCAACCGGTACACGGGAGTCCCTGATCGCTTCACAGGC				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC500194), mRNA.					
Rattus norvegicus	RefSeq	GI_25453411-S	ILMN_277161	GSTP2	NM_138974.1	NM_138974.1		29438	25453411	NM_138974.1	Gstp2	NP_620430.1	ILMN_1366294	0005900670	S	646	CCCATCAACGGCAATGGTAAACAGTAGTGGACGAAGGGACAGGAACTCCT	1	-	206627440-206627463:206627464-206627489	1q42	Rattus norvegicus glutathione S-transferase, pi 2 (Gstp2), mRNA.					
Rattus norvegicus	RefSeq	GI_62647226-S	ILMN_56752	RGD1562563_PREDICTED	XM_575468.2	XM_575468.2		500116	109472017	XM_575468.2	RGD1562563_predicted	XP_575468.2	ILMN_1369507	0002680605	S	1419	CTGTCAGGCTTGTCTGGAGTGGCATGGAGCAGTTGAATAGTTGAGTGTAG	4	-	77372900-77372949	4q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA G430041M01 (predicted) (RGD1562563_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666676-S	ILMN_262587	RGD1564866_PREDICTED	XR_007647.1	XR_007647.1		501536	109512440	XR_007647.1	RGD1564866_predicted		ILMN_1360217	0001940390	S	1030	CATGTCACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGTCAGGGCC				Xq14	PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (predicted) (RGD1564866_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542328-S	ILMN_288070	CYP3A2	NM_153312.2	NM_153312.2		266682	31542328	NM_153312.2	Cyp3a2	NP_695224.2	ILMN_1355809	0005360315	S	1545	GGTTCTGCCACGGGATGCAGTCATAAATGGAGCCTGACTTTCCCTCAAGG	12	-	9517287-9517336	12p11	Rattus norvegicus cytochrome P450, family 3, subfamily a, polypeptide 2 (Cyp3a2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Catalysis of the reaction: testosterone + donor-H2 + O2 = 6-beta-hydroxytestosterone + H2O [goid 50649] [evidence IMP]	MGC108545; Cyp3a11; Cyp3a2	MGC108545; Cyp3a11; Cyp3a2
Rattus norvegicus	RefSeq	GI_62339316-S	ILMN_274821	PCDHB3_PREDICTED	XM_001055054.1	XM_001055054.1		291656	109506463	XM_001055054.1	Pcdhb3_predicted	XP_001055054.1	ILMN_1357808	0006450086	S	2180	CCTGAGGTGGCGCGCGACTCCCTGCAAAACGATGTGGATTTGCTCACGTT	18	+	30112580-30112629	18p11	PREDICTED: Rattus norvegicus protocadherin beta 3 (predicted) (Pcdhb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640880	ILMN_268738	TMEM135	NM_001013896.1	NM_001013896.1		293098	62078520	NM_001013896.1	Tmem135	NP_001013918.1	ILMN_1649782	0002940148	S	2930	CCCTACAGAGAGACAGACTCTAGTGCCATCATGTAACAGAACCACTTTAG	1	-	145665212-145665261	1q32	Rattus norvegicus transmembrane protein 135 (Tmem135), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_53828921-S	ILMN_291407	PCYT1A	NM_078622.2	NM_078622.2		140544	53828921	NM_078622.2	Pcyt1a	NP_511177.2	ILMN_1370274	0000430670	S	1311	GAACAGACAAACGGGGCAAGAGGACCTGGGAACGGGGGAACCAAAACAGC	11	-	70133515-70133564	11q22	Rattus norvegicus phosphate cytidylyltransferase 1, choline, alpha (Pcyt1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence NAS]; Cytoplasmic bead-like structures of animal cells, visible by electron microscope. Each granule is a functional unit with the biosynthesis and catabolism of glycogen being catalyzed by enzymes bound to the granule surface [goid 42587] [evidence IEA]; Cytoplasmic bead-like structures of animal cells, visible by electron microscope. Each granule is a functional unit with the biosynthesis and catabolism of glycogen being catalyzed by enzymes bound to the granule surface [goid 42587] [evidence ISS]	The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence TAS]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus [goid 9628] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus [goid 9628] [evidence ISS]	Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline [goid 4105] [evidence IDA]; Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline [goid 4105] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IMP]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93248; CCT-alpha; CTP	MGC93248; CCT-alpha; CTP
Rattus norvegicus	RefSeq	GI_62659697-S	ILMN_265422	LOC686988	XM_001076634.1	XM_001076634.1		686988	109498999	XM_001076634.1	LOC686988	XP_001076634.1	ILMN_1374321	0000520110	S	2849	CGGACGAGCAGGTTATTGAGAATACTGGAGAGTTCTTCCGAGACCAGGGG					PREDICTED: Rattus norvegicus similar to Discoidin domain-containing receptor 2 precursor (Discoidin domain receptor 2) (Receptor protein-tyrosine kinase TKT) (Tyrosine-protein kinase TYRO 10) (Neurotrophic tyrosine kinase, receptor-related 3) (CD167b antigen) (LOC686988), mRNA.					
Rattus norvegicus	RefSeq	GI_62644013-S	ILMN_53991	RGD1559714_PREDICTED	XM_578055.2	XM_578055.2		502570	109465739	XM_578055.2	RGD1559714_predicted	XP_578055.2	ILMN_1352519	0001090348	S	966	CTCTGATACCGTGGGGTGGAAGTCAATGGTGGAGTCACATCCCTACTTGG	2|NW_047645.1	-	62444-62493		PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1559714_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650006-S	ILMN_58842	LOC500586	XM_575955.1	XM_575955.1		500586	62650006	XM_575955.1	LOC500586	XP_575955.1	ILMN_1369708	0004610280	S	168	GGCGAGAGGCAAAGCGCAGGAACCCAAGCAACAGAAACCAAGACTACATG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500586), mRNA.					
Rattus norvegicus	RefSeq	GI_50511331-S	ILMN_298508	MRGPRE	NM_001002288.1	NM_001002288.1		404660	50511331	NM_001002288.1	Mrgpre	NP_001002288.1	ILMN_1372984	0000520180	S	873	TGAGCTGGGGGCTGTGAGAGAGGCTTCCCAAGGGGGACTTGTGGACATGA	1	-	204171082-204171131	1q41	Rattus norvegicus MAS-related GPR, member E (Mrgpre), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgE	MrgE
Rattus norvegicus	RefSeq	GI_62652887-S	ILMN_265844	CELSR1	XM_001070474.1	XM_001070474.1		300128	109481139	XM_001070474.1	Celsr1	XP_001070474.1	ILMN_1366512	0000430086	S	8814	GCAGCCAGCCCCAGGAGCAGCGGAAAGGCATCCTGAAAAACAAAGTCACC	7	-	123901439-123901462:123901707-123901732	7q34	PREDICTED: Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 1 (Celsr1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The specification and formation of a polarized embryonic epithelial sheet [goid 42249] [evidence IEA]; The specification and formation of a polarized embryonic epithelial sheet [goid 42249] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence IEA]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643877-S	ILMN_269218	VPS72_PREDICTED	XM_001059613.1	XM_001059613.1		310661	109467176	XM_001059613.1	Vps72_predicted	XP_001059613.1	ILMN_1374173	0001980112	S	1115	GGCCCCGAGCCTTGCGTCAGAAGATTGTCATCAAATAGAGGCACCTGACC				2q34	PREDICTED: Rattus norvegicus vacuolar protein sorting 72 (yeast) (predicted) (Vps72_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644320-S	ILMN_70016	LOC499708	XM_575036.1	XM_575036.1		499708	62644320	XM_575036.1	LOC499708	XP_575036.1	ILMN_1372187	0001780487	S	55	TTAAATACAAATCATGGCTCTCTCCTCCAGCCGAGCAAGATGCCCAAAGG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC499708), mRNA.					
Rattus norvegicus	RefSeq	GI_62641908-S	ILMN_296816	DTX4	XM_001076321.1	XM_001076321.1		293774	109463610	XM_001076321.1	Dtx4	XP_001076321.1	ILMN_1370848	0005420500	S	1602	CCCAGATGCCAATTACCTGGATAACGTGCTGGCTGAACTGGCTGCCCAGG				1q43	PREDICTED: Rattus norvegicus deltex 4 homolog (Drosophila) (Dtx4), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661844-S	ILMN_64214	GPC5_PREDICTED	XM_224489.3	XM_224489.3		306157	62661844	XM_224489.3	Gpc5_predicted	XP_224489.3	ILMN_1350163	0002940446	S	2885	GGCAGCTTCTGATTGTGCATCGGAGATGGGAGGGTGTTCTGAGTGTGGAC				15q24	PREDICTED: Rattus norvegicus glypican 5 (predicted) (Gpc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654031-S	ILMN_290566	RGD1564964_PREDICTED	XM_001062086.1	XM_001062086.1		315843	109485060	XM_001062086.1	RGD1564964_predicted	XP_001062086.1	ILMN_1366462	0004060438	S	5164	CTCAAGGGCTCTGAACCTCACATGAGAACTAGAAACCAAGGTCGAAGGAC				8q31	PREDICTED: Rattus norvegicus similar to WD repeat domain 11 protein (predicted) (RGD1564964_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664888-S	ILMN_267579	RGD1562579_PREDICTED	XM_001080556.1	XM_001080556.1		288717	109497534	XM_001080556.1	RGD1562579_predicted	XP_001080556.1	ILMN_1349418	0001240524	S	505	AGTCAGACTGAGGTTTCCGTTCTCACCTCCCTGGGTGTGACAGTCCTCAG				19p11	PREDICTED: Rattus norvegicus similar to SRR1-like protein (predicted) (RGD1562579_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646317-S	ILMN_270477	SGK2	XM_001070075.1	XM_001070075.1		171497	109471254	XM_001070075.1	Sgk2	XP_001070075.1	ILMN_1353015	0003870176	S	936	CGTGGAGGGACCCGCTGACTTGAAACACTTTGACCCAGAGTTCACCCAGG				3q42	PREDICTED: Rattus norvegicus serum/glucocorticoid regulated kinase 2 (Sgk2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 15459] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655890-S	ILMN_60262	RGD1561785_PREDICTED	XM_213271.4	XM_213271.4		287157	109487921	XM_213271.4	RGD1561785_predicted	XP_213271.4	ILMN_1358869	0002900035	S	4699	GGCCACAGGACCAAGGTAAACGAGGTGGTCTTCAGCCCCAGTGAATCTCA	10	-	15112082-15112117:15113131-15113144	10q12	PREDICTED: Rattus norvegicus similar to mKIAA1924 protein (predicted) (RGD1561785_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649583-S	ILMN_59625	RGD1560700_PREDICTED	XM_342904.3	XM_342904.3		362585	109475440	XM_342904.3	RGD1560700_predicted	XP_342905.2	ILMN_1356603	0004570441	S	181	TCCAAGAGTCTCAAGTTCCTAAGGTTGCTGGCTCAGAGATGCCCAATCCC	5	-	142085738-142085768:142086790-142086808	5q36	PREDICTED: Rattus norvegicus similar to palmitoyl-protein thioesterase (predicted) (RGD1560700_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664861-S	ILMN_263872	RGD1563526_PREDICTED	XR_007841.1	XR_007841.1		502188	109508398	XR_007841.1	RGD1563526_predicted		ILMN_1359901	0002030161	S	50	TTTGCCCGTCACCCATTGCAGATAATCGGGCCATCGACAGACAGCAGCGC				19p13	PREDICTED: Rattus norvegicus similar to protein-tyrosine-phosphatase (EC 3.1.3.48) isoenzyme AcP2 - rat (predicted) (RGD1563526_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527402-S	ILMN_285687	ROM1	NM_001009690.1	NM_001009690.1		309201	57527402	NM_001009690.1	Rom1	NP_001009690.1	ILMN_1355484	0004120408	S	1447	CCACCAAGGCTGAGAAGAGATGAGGGTGAGAGGGAAGTGACAGCCAACGG	1	-	211604346-211604395	1q43	Rattus norvegicus rod outer segment membrane protein 1 (Rom1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105717	MGC105717
Rattus norvegicus	RefSeq	GI_62653006-S	ILMN_52116	SENP1_PREDICTED	XM_217046.4	XM_217046.4		300193	109481258	XM_217046.4	Senp1_predicted	XP_217046.4	ILMN_1359314	0000070500	S	1791	GCCCATTCACTTGGGTGTGCACTGGTGTCTGGCGGTTGTAGACTTTAGAA	7	-	136752688-136752704:136753446-136753478	7q36	PREDICTED: Rattus norvegicus SUMO1/sentrin specific protease 1 (predicted) (Senp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34877977-S	ILMN_263391	RGD1560178_PREDICTED	XM_001070816.1	XM_001070816.1		301724	109514214	XM_001070816.1	RGD1560178_predicted	XP_001070816.1	ILMN_1360020	0006370113	S	582	GGGCGTGCTGCTCTACTTTATGACCGCCGGGTTCGTCCCCTACAAAATAG				9q37	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1560178_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33414506-S	ILMN_286905	SMAGP	NM_182817.1	NM_182817.1		300236	33414506	NM_182817.1	Smagp	NP_877969.1	ILMN_1352592	0002260341	S	1402	CCGCACGGGAGCACTGGTTTCTGGGTGGGATGTAAAAGGCATGACACATG	7	-	139367430-139367479	7q36	Rattus norvegicus small cell adhesion glycoprotein (Smagp), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]			MGC124543	MGC124543
Rattus norvegicus	RefSeq	GI_62648860-S	ILMN_274577	LOC689695	XM_001071683.1	XM_001071683.1		689695	109474759	XM_001071683.1	LOC689695	XP_001071683.1	ILMN_1350935	0002850546	S	2079	TGATGTGGATGTCTGCTTCACTGACGACCAGAGCGACCCTGAGGCTGGGG	5	-	36422427-36422476	5q21	PREDICTED: Rattus norvegicus similar to PR domain containing 13 (LOC689695), mRNA.					
Rattus norvegicus	RefSeq	GI_13928823-S	ILMN_289565	YWHAE	NM_031603.1	NM_031603.1		29753	13928823	NM_031603.1	Ywhae	NP_113791.1	ILMN_1352855	0003390577	S	1482	CTCCCTCTGACGCAGGTTAGCATTGAAGGTGGTATGGAAGCCTGCATGCG	10	+	63109577-63109626	10q24	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (Ywhae), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphate groups from a protein [goid 35308] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of protein kinase C, an enzyme which phosphorylates a protein [goid 8426] [evidence TAS]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]	14-3-3e	14-3-3e
Rattus norvegicus	RefSeq	GI_62649346-S	ILMN_271714	RGD1561242_PREDICTED	XM_001058738.1	XM_001058738.1		502969	109476797	XM_001058738.1	RGD1561242_predicted	XP_001058738.1	ILMN_1365624	0001570025	S	1329	CTCAGTGGGAAAGAGAGCGTGCCCAGGAGAAAAACTGGCCAAGTCCGAGC				5q33	PREDICTED: Rattus norvegicus similar to Cytochrome P450, family 2, subfamily j, polypeptide 11 (predicted) (RGD1561242_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660920-S	ILMN_273358	REL_PREDICTED	XM_001062884.1	XM_001062884.1		305584	109501112	XM_001062884.1	Rel_predicted	XP_001062884.1	ILMN_1354389	0006100286	S	2190	CCCCTCCTGTAACTCCAGGTTAGACCCAAGAGACCCGAGACAACTGCATC				14q22	PREDICTED: Rattus norvegicus reticuloendotheliosis oncogene (predicted) (Rel_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642207-S	ILMN_53730	TNKS2_PREDICTED	XM_220047.4	XM_220047.4		309512	109460081	XM_220047.4	Tnks2_predicted	XP_220047.4	ILMN_1358674	0001450020	S	3935	CATAGTGTCCTGAAGCGCTGACGGCCTCTTAAGTTTCACTCCTTGGCGGG	1	+	241162159-241162208	1q53	PREDICTED: Rattus norvegicus tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (predicted) (Tnks2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592128-S	ILMN_296632	DOC2B	NM_031142.1	NM_031142.1		81820	13592128	NM_031142.1	Doc2b	NP_112404.1	ILMN_1364148	0004150632	S	1697	CCTATCAGAGGTGAGGGGTGGAACCCTGCTGCAAGCACAGAAATGGGGGT				10q24	Rattus norvegicus double C2-like domains, beta (Doc2b), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647822-S	ILMN_62138	LOC497790	XM_579431.1	XM_579431.1		497790	62647822	XM_579431.1	LOC497790	XP_579431.1	ILMN_1352314	0001850541	S	3978	GTGTGCTGGCATTGCACGCTCTCCTTAGGATTGTCTGTCTTTTTCCGGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019329 (LOC497790), mRNA.					
Rattus norvegicus	RefSeq	GI_62663825-S	ILMN_289317	RGD1562827_PREDICTED	XM_001061350.1	XM_001061350.1		502129	109505958	XM_001061350.1	RGD1562827_predicted	XP_001061350.1	ILMN_1372198	0002320093	S	377	GGTGCTGCTGCCCAAGAAGACCGAGAGCCACCACAAGGCTAAGGGGAAGT				17q11	PREDICTED: Rattus norvegicus similar to Histone H2A.1 (predicted) (RGD1562827_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647290-A	ILMN_271337	CHN2	NM_032084.1	NM_032084.1		84031	14091778	NM_032084.1	Chn2	NP_114473.1	ILMN_1376494	0002570079	S	695	CCGGAGCCCTGAAACTGTACTTCAGAGACTTACCCATCCCCATCATCACA	4	+	82674719-82674733:82676445-82676479	4q24	Rattus norvegicus chimerin (chimaerin) 2 (Chn2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The formation of the acrosome from the spermatid Golgi [goid 1675] [evidence IEP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Combining with a phorbol ester to initiate a change in cell activity [goid 1565] [evidence TAS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rac family [goid 30675] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_15011858-S	ILMN_277547	CTBP1	XM_001062979.1	XM_001062979.1		29382	109500803	XM_001062979.1	Ctbp1	XP_001062979.1	ILMN_1366264	0006020494	S	2069	GTTGGCAGACCCTTGCCTACGTGGTGCCGTCCTGCTGATGTGGTAGGCTA				14q21	PREDICTED: Rattus norvegicus C-terminal binding protein 1, transcript variant 1 (Ctbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence TAS]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence TAS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656815-S	ILMN_69958	LOC501710	XM_577115.1	XM_577115.1		501710	62656815	XM_577115.1	LOC501710	XP_577115.1	ILMN_1367812	0000070059	S	399	CTGGACTGGGAAATCCTGAGGCACCAGAGAACCACAGACATTTACGTGGG					PREDICTED: Rattus norvegicus LOC501710 (LOC501710), mRNA.					
Rattus norvegicus	RefSeq	GI_21687107-S	ILMN_265091	TMEM37	NM_139095.1	NM_139095.1		245953	21687107	NM_139095.1	Tmem37	NP_620795.1	ILMN_1367695	0006350736	S	162	GGATCGTCTCTTTGGGCTCTGGTACTTCTGCACCATCAGCAACCACAGTG	Un|NW_047910.1	+	357826-357875		Rattus norvegicus transmembrane protein 37 (Tmem37), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Pr1; Pr	Pr1; Pr
Rattus norvegicus	RefSeq	GI_62659430-S	ILMN_70401	LOC498241	XM_573464.1	XM_573464.1		498241	62659430	XM_573464.1	LOC498241	XP_573464.1	ILMN_1354747	0005130494	S	2308	GCTGCCACAAATGCAAAAGCAGAGCATTGGAAACTCCTGATCCAAAAGGG				13q13	PREDICTED: Rattus norvegicus similar to complement factor H-related protein (LOC498241), mRNA.					
Rattus norvegicus	RefSeq	GI_28212237-S	ILMN_294538	TAAR4	NM_175583.1	NM_175583.1		294122	28212237	NM_175583.1	Taar4	NP_783173.1	ILMN_1356403	0002350333	S	709	CCTAGGACAAAACGGGCCCTCTCAGAAAGCAAAATGAAGGCCACATCCGG	1	-	22008403-22008452	1p12	Rattus norvegicus trace-amine-associated receptor 4 (Taar4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	 [goid 1594] [evidence IDA];  [goid 1594] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta2	Ta2
Rattus norvegicus	RefSeq	GI_62646481-S	ILMN_64882	LOC502697	XM_578196.1	XM_578196.1		502697	62646481	XM_578196.1	LOC502697	XP_578196.1	ILMN_1370893	0004730025	S	1325	CCGACCTGCAGAATGGCTGGTTGTGGCGGATAACGGGTTGTTTGTCTCCG					PREDICTED: Rattus norvegicus similar to prepro-endothelin-3 (LOC502697), mRNA.					
Rattus norvegicus	RefSeq	GI_62642258-S	ILMN_55913	CCNJ_PREDICTED	XM_220004.4	XM_220004.4		294053	109460074	XM_220004.4	Ccnj_predicted	XP_220004.2	ILMN_1350473	0002230605	S	1117	AGGGCCTTGGCCACATGCAGACTGGTGTTGGGATGTCCCTGGCAATACCA	1	+	246012408-246012457	1q54	PREDICTED: Rattus norvegicus cyclin J (predicted) (Ccnj_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647056-S	ILMN_48459	RGD1566104_PREDICTED	XM_578233.2	XM_578233.2		502734	109471806	XM_578233.2	RGD1566104_predicted	XP_578233.2	ILMN_1349136	0005220707	S	266	CGTATGGTCATGGCTCCACAGCACCTGTGAGGTGTGGTTCTTTCCCTACC	4	+	44932342-44932391	4q21	PREDICTED: Rattus norvegicus similar to Txndc7 protein (predicted) (RGD1566104_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.22957	ILMN_161150	RN.22957	Rn.22957		Rn.22957		49576551	CO394635			ILMN_1530324	0002190577	S	104	TGGATTCATGGGCTTTTGTTCACGGTTTCCACCAGGGATAAACAAATGTT					AGENCOURT_26728543 NIH_MGC_255 Rattus norvegicus cDNA clone IMAGE:7317462 5', mRNA					
Rattus norvegicus	RefSeq	GI_62656613-S	ILMN_283812	RGD1311017_PREDICTED	XM_340853.2	XM_340853.2		360574	62656613	XM_340853.2	RGD1311017_predicted	XP_340854.1	ILMN_1352692	0005130088	S	2333	ACAGGGCAGTGCAGAGCGGAGAGCCGTGTGATCTAAGAGGCTGAACAAAG	10	-	66140727-66140776	10q25	PREDICTED: Rattus norvegicus similar to multiple hat domains (predicted) (RGD1311017_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665785-S	ILMN_65977	TMPRSS3_PREDICTED	XM_228059.4	XM_228059.4		309665	109509262	XM_228059.4	Tmprss3_predicted	XP_228059.4	ILMN_1363180	0004120632	S	1307	CAGGGATGTGTATGGCGGTATCATTTCACCCTCCATGCTCTGTGCGGGCT	20	-	9550629-9550678	20p12	PREDICTED: Rattus norvegicus transmembrane protease, serine 3 (predicted) (Tmprss3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138520-S	ILMN_301483	EZR	NM_019357.1	NM_019357.1		54319	52138520	NM_019357.1	Ezr	NP_062230.1	ILMN_1361603	0001170451	S	2440	AGGCCAGATTTTTATGACAGTTGCCGAATCACTTCCCGTTCGGAGCAGGG	1	-	41178652-41178701	1q11	Rattus norvegicus ezrin (Ezr), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; A short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum that is similar in structure to a centriole. The basal body serves as a nucleation site for axoneme growth [goid 5932] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence ISS]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere [goid 22614] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEP]; Any cellular process that results in the specification, formation or maintenance polarization of a cell's architecture along its apical/basal axis so that the apical and basal regions of the cell have different membrane, extracellular matrix and sub-membrane cellular components [goid 35088] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence TAS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]	MGC94076	MGC94076
Rattus norvegicus	RefSeq	GI_62658506-S	ILMN_272078	RGD1311314	XM_001073617.1	XM_001073617.1		304317	109496649	XM_001073617.1	RGD1311314	XP_001073617.1	ILMN_1350358	0005890348	S	1132	GCGTGGAGTCATACGTTTCCTGATGGGCCTGAACCAGTGTCTGAGGAAGG				12q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530401C20 (RGD1311314), mRNA.					
Rattus norvegicus	RefSeq	GI_62718465-S	ILMN_61963	LOC361082	XM_341365.2	XM_341365.2		361082	62718465	XM_341365.2	LOC361082	XP_341366.2	ILMN_1352935	0000130450	S	58	CACGCCCGAAAGCAGAACACACTGTCCCCGTAACTGACTGAAAGAGAGGA					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC361082), mRNA.					
Rattus norvegicus	RefSeq	GI_62655075-S	ILMN_54729	LOC503258	XM_578793.1	XM_578793.1		503258	62655075	XM_578793.1	LOC503258	XP_578793.1	ILMN_1359539	0004280082	S	258	CACATGAGTCGGACAGATCAGTGCAGGAATCCACTTGTGCAGTGTGACAC					PREDICTED: Rattus norvegicus similar to thymosin beta-10 (LOC503258), mRNA.					
Rattus norvegicus	RefSeq	GI_62651138-S	ILMN_262988	RGD1565082_PREDICTED	XM_001064833.1	XM_001064833.1		314381	109479850	XM_001064833.1	RGD1565082_predicted	XP_001064833.1	ILMN_1361246	0000380040	S	3377	GGGCAAAGGTGCTGTACATGGACGCCGTGGAGTATTTCCCAGAGGAGCTG				6q32	PREDICTED: Rattus norvegicus similar to Protein C14orf102 homolog (predicted) (RGD1565082_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758339-S	ILMN_262696	PCYT2	NM_053568.1	NM_053568.1		89841	16758339	NM_053568.1	Pcyt2	NP_446020.1	ILMN_1365622	0003990594	S	1483	GCAGACGGCACCTGTGACTGGAGGATTGTTGCTGTGTATCCTTGGCATCC	10	-	110002334-110002383	10q32.3	Rattus norvegicus phosphate cytidylyltransferase 2, ethanolamine (Pcyt2), mRNA.		The chemical reactions and pathways resulting in the formation of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine [goid 6646] [evidence TAS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: CTP + ethanolamine phosphate = diphosphate + CDP-ethanolamine [goid 4306] [evidence IDA]; Catalysis of the reaction: CTP + ethanolamine phosphate = diphosphate + CDP-ethanolamine [goid 4306] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	ET; MGC93299	ET; MGC93299
Rattus norvegicus	RefSeq	GI_34867184-S	ILMN_269544	RGD1563774_PREDICTED	XM_232854.2	XM_232854.2		297906	34867184	XM_232854.2	RGD1563774_predicted	XP_232854.2	ILMN_1361013	0006520136	S	724	CCGTCACAGAAAGTGCAGCCAGAACCAGCTTATCCCCACGAGACAGAGAC	5	-	28067344-28067393	5q13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1563774_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663372	ILMN_50828	LOC497712	XM_579055.1	XM_579055.1		497712	62663372	XM_579055.1	LOC497712	XP_579055.1	ILMN_1651187	0006650193	S	3501	GAGCTGGCAGGGAAAGTACCCGTATCTACTGTGTCCAGTTTGGTTTTGCG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001001511 (LOC497712), mRNA.					
Rattus norvegicus	RefSeq	GI_62645514-S	ILMN_62756	LOC499854	XM_575195.1	XM_575195.1		499854	62645514	XM_575195.1	LOC499854	XP_575195.1	ILMN_1352254	0003060008	S	1627	CACACCAGACTTCTTGCCAGAAACTATGAAGGCCAGAAGATCCTGGACTG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC499854), mRNA.					
Rattus norvegicus	RefSeq	GI_62641615-A	ILMN_285035	CEND1	NM_001014163.1	NM_001014163.1		361675	62079058	NM_001014163.1	Cend1	NP_001014185.1	ILMN_1376309	0006980112	S	826	GCAGGAAAGAAATAGACAGTGAGCCCACCTCCACTGACCCCAGCACACGC	1	-	201615186-201615235	1q41	Rattus norvegicus cell cycle exit and neuronal differentiation 1 (Cend1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109325	MGC109325
Rattus norvegicus	RefSeq	GI_62717734-S	ILMN_67842	LOC302140	XM_229717.3	XM_229717.3		302140	62717734	XM_229717.3	LOC302140	XP_229717.3	ILMN_1369411	0007100600	S	341	TTATTCTTCCCACATCGTGTACCCTGGACCAGGATGCCGTGGCCTACCAC					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC302140), mRNA.					
Rattus norvegicus	RefSeq	GI_62644379-S	ILMN_50260	SEC24B_PREDICTED	XM_215706.4	XM_215706.4		295461	109465571	XM_215706.4	Sec24b_predicted	XP_215706.4	ILMN_1366913	0001980278	S	4283	GCATCGTCAGACGGCAGCTCTGGCAGAGAGGGACGAGGTGACTAATGCAT	2	-	227461630-227461679	2q43	PREDICTED: Rattus norvegicus SEC24 related gene family, member B (S. cerevisiae) (predicted) (Sec24b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58761523-S	ILMN_273674	JUND	XM_001070425.1	XM_001070425.1		24518	109503977	XM_001070425.1	Jund	XP_001070425.1	ILMN_1360473	0001240438	S	1323	GCTACGAGTCCACATTCCTGTTCCGTAATCCTTGGTTCGCCGGTTTTGTG				16p14	PREDICTED: Rattus norvegicus Jun D proto-oncogene (Jund), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively, in a ligand dependent manner, with a nuclear receptor protein [goid 16922] [evidence IPI]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649790-S	ILMN_70289	AHDC1_PREDICTED	XM_342936.3	XM_342936.3		362617	109475617	XM_342936.3	Ahdc1_predicted	XP_342937.1	ILMN_1353314	0000460286	S	5430	GGCTTTCAGAAGACCAATGCCAAGACCCCTCCCAGCGTCCACAGCATCCT	5	-	152035348-152035396:152045447-152045447	5q36	PREDICTED: Rattus norvegicus AT hook, DNA binding motif, containing 1 (predicted) (Ahdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16924011-S	ILMN_284491	TNFSF11	NM_057149.1	NM_057149.1		117516	16924011	NM_057149.1	Tnfsf11	NP_476490.1	ILMN_1367765	0003450411	S	850	CTCCGGGCTGGTGAGGAAATTAGCGTCCAGGTGTCCAACCCTTCCCTGTT	15	-	59397894-59397943	15q11	Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 11 (Tnfsf11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; Any process that modulates the frequency, rate or extent of osteoclast differentiation [goid 45670] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of osteoclast differentiation [goid 45672] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RANKL	RANKL
Rattus norvegicus	RefSeq	GI_62641978-S	ILMN_68020	LOC365402	XM_344988.2	XM_344988.2		365402	62641978	XM_344988.2	LOC365402	XP_344989.2	ILMN_1349570	0004560441	S	338	GGCCACAAATGAAGTTGCCCTGACATTCATCTGCAGGGCCTTCAACGCAG				1q43	PREDICTED: Rattus norvegicus similar to probable nocturnin protein (LOC365402), mRNA.					
Rattus norvegicus	RefSeq	GI_47577686-S	ILMN_282182	OLR63	NM_001000542.1	NM_001000542.1		365323	47577686	NM_001000542.1	Olr63	NP_001000542.1	ILMN_1363369	0005340332	S	900	CCGGCAGCGCATCCTTCGTCTTTTTCTCATGACCACACACACTTCAGCTC	1	-	160647970-160648019	1q32	Rattus norvegicus olfactory receptor 63 (Olr63), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	POGR; ratchr1-160727936-160726983_ORF	POGR; ratchr1-160727936-160726983_ORF
Rattus norvegicus	RefSeq	GI_62665476-S	ILMN_50568	LOC365005	XM_344769.2	XM_344769.2		365005	62665476	XM_344769.2	LOC365005	XP_344770.2	ILMN_1351268	0001340195	S	24	GCGGGAAATACATATCAGACCATAACAGAAGTCTCCACAGCCGTGACCAA					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC365005), mRNA.					
Rattus norvegicus	RefSeq	GI_62646243-S	ILMN_266589	RGD1561297_PREDICTED	XR_008501.1	XR_008501.1		366239	109471206	XR_008501.1	RGD1561297_predicted		ILMN_1364272	0001090497	S	599	CCTGTCTACCCTGTATCAAAAGATGGGGGTGTCCTACTGCATCTTAAAGG				3q42	PREDICTED: Rattus norvegicus similar to Rpl7a protein (predicted) (RGD1561297_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34859478-S	ILMN_297160	RGD1561878_PREDICTED	XR_008070.1	XR_008070.1		311553	109471086	XR_008070.1	RGD1561878_predicted		ILMN_1360168	0005050451	S	4235	TGGAGCCGCCTTCCATCCCCTCCCAACTCAGCATCAAGCAGGCTTTGTAC				3q41	PREDICTED: Rattus norvegicus similar to mKIAA0978 protein (predicted) (RGD1561878_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652505-S	ILMN_282100	LOC299920	NM_001025659.1	NM_001025659.1		299920	71043821	NM_001025659.1	LOC299920	NP_001020830.1	ILMN_1362612	0002630632	S	1428	GTTGAACCCAGTGAGGCAGAGCCAGACTTTGACGATAACCCAGAGGTGCC	7	-	103747835-103747884	7q33	Rattus norvegicus similar to testis specific protein (LOC299920), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC114437	MGC114437
Rattus norvegicus	RefSeq	GI_18426813-S	ILMN_282872	DHFR	NM_130400.1	NM_130400.1		24312	18426813	NM_130400.1	Dhfr	NP_569084.1	ILMN_2040525	0000620750	S	397	CCAGAGCTAGCAAGTAAAGTGGACATGGTCTGGGTAGTCGGAGGCAGCTC	2	+	22615920-22615969	2q12	Rattus norvegicus dihydrofolate reductase (Dhfr), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid [goid 6545] [evidence IEA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; The chemical reactions and pathways involving dihydrofolate, the dihydroxylated derivative of folate [goid 46452] [evidence IDA]; The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety [goid 46654] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+ [goid 4146] [evidence IDA]; Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+ [goid 4146] [evidence ISS]; Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+ [goid 4146] [evidence IEA]; Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+ [goid 4146] [evidence IMP]; Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+ [goid 4146] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]; Interacting selectively with dihydrofolic acid, a folic acid in which the bicyclic pteridine structure is in the dihydro, partially reduced form; they are intermediates in folate metabolism and are reduced to their tetrahydro, reduced forms [goid 51871] [evidence IDA]	Dhfr1	Dhfr1
Rattus norvegicus	RefSeq	GI_62646340-S	ILMN_272635	MATN4_PREDICTED	XM_001071275.1	XM_001071275.1		296358	109471280	XM_001071275.1	Matn4_predicted	XP_001071275.1	ILMN_1368817	0002120132	S	1698	CATTTGCCCAGAGGAGGGCATCAGCGCGGGGACAGAGCTTCGGAGTCCCT				3q42	PREDICTED: Rattus norvegicus matrilin 4 (predicted) (Matn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653472-S	ILMN_54636	LOC315547	XM_235988.2	XM_235988.2		315547	62653472	XM_235988.2	LOC315547	XP_235988.2	ILMN_1372355	0001580358	S	1935	CAGGACTGGCCTCCTTCCTGGTGCTGATACAGAGAAATCTGACCAGAGCC				8q21	PREDICTED: Rattus norvegicus hypothetical LOC315547 (predicted) (LOC315547), mRNA.					
Rattus norvegicus	RefSeq	GI_62652365-S	ILMN_65602	RGD1562331_PREDICTED	XM_576261.2	XM_576261.2		500863	109480692	XM_576261.2	RGD1562331_predicted	XP_576261.1	ILMN_1368734	0000730022	S	1063	GTTGGTCATTGGAGCGAATGGGGAACGTGTAGCAGAAACAACCGCACGTG	7	-	78828258-78828307	7q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610028F08 (predicted) (RGD1562331_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.14639	ILMN_161117	RN.14639	Rn.14639		Rn.14639		13888647	BG666725			ILMN_1530149	0004010167	S	513	TTATAGATCCTGACTTTGAAATAAATAGTGTAATTGGGAACTTTTACCTC					DRABUB01 Rat DRG Library Rattus norvegicus cDNA clone DRABUB01 5', mRNA					
Rattus norvegicus	RefSeq	GI_62648656-S	ILMN_57387	LOC502941	XM_578443.1	XM_578443.1		502941	62648656	XM_578443.1	LOC502941	XP_578443.1	ILMN_1363463	0000450551	S	395	CAAGTGCCACCGAACACCATCTGTGGATTGAAACAGAAAGATAGCTCGGA					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38663 (LOC502941), mRNA.					
Rattus norvegicus	RefSeq	GI_62656096-S	ILMN_48213	G3BP	XM_340802.3	XM_340802.3		171092	109488112	XM_340802.3	G3bp	XP_340803.2	ILMN_1354664	0001500056	S	2481	ATCACGCCTCAGACTGGGATGCTTTTGAGGAAAGGTGCTTCTGTGAGGCC	10	+	40909558-40909607	10q22	PREDICTED: Rattus norvegicus Ras-GTPase-activating protein SH3-domain binding protein (G3bp), mRNA.					
Rattus norvegicus	RefSeq	GI_13027474-S	ILMN_282506	SECISBP2	NM_024002.1	NM_024002.1		79049	13027474	NM_024002.1	Secisbp2	NP_076492.1	ILMN_1367121	0003190066	S	2957	GGGATGGAGCCCTGCCACTTTGTGCTGCCAAGGATTTGCTAAGATGAGCC	17	-	19391634-19391683	17p14	Rattus norvegicus SECIS binding protein 2 (Secisbp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation, it is not a posttranslational modification of peptidyl-cysteine [goid 1514] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the 3' untranslated region of an mRNA molecule [goid 3730] [evidence IDA]; Interacting selectively with the 3' untranslated region of an mRNA molecule [goid 3730] [evidence ISS]; Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome [goid 8135] [evidence TAS]	Sbp2	Sbp2
Rattus norvegicus	RefSeq	GI_62656917-S	ILMN_54923	SOCS7_PREDICTED	XM_213443.4	XM_213443.4		287659	109488900	XM_213443.4	Socs7_predicted	XP_213443.3	ILMN_1363183	0000450079	S	1895	GAAAGGGTTGTGACTCTCGGCACAGACTTTGGTCCCCTGTATCCCTGGGG	10	+	86134052-86134101	10q31	PREDICTED: Rattus norvegicus suppressor of cytokine signaling 7 (predicted) (Socs7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717858-S	ILMN_52362	LOC367523	XM_346193.2	XM_346193.2		367523	62717858	XM_346193.2	LOC367523	XP_346194.2	ILMN_1365826	0006450364	S	205	CACTGAGCATCGGAAACACAGAAAGGAATGCTACTGGACGCAGGGCTCCC					PREDICTED: Rattus norvegicus hypothetical LOC367523 (LOC367523), mRNA.					
Rattus norvegicus	RefSeq	GI_62666602-S	ILMN_283652	OTUD5	NM_001037496.1	NM_001037496.1		363452	82734232	NM_001037496.1	Otud5	NP_001032585.1	ILMN_1362346	0000070332	S	2315	CTTGGAAGGGCTAAGGATATGAGCCAGAGGGAAGTGGCAGGAGATGCGGG	X	-	26660963-26661012	Xq13	Rattus norvegicus OTU domain containing 5 (Otud5), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718302-S	ILMN_52964	LOC501355	XM_576766.2	XM_576766.2		501355	109513481	XM_576766.2	LOC501355	XP_576766.2	ILMN_1349118	0003990348	S	615	GAGACCCTTGGTGGATGGGGAAGAAGGCTATAAGTACATAGTGACTGGAC	Un|NW_047883.1	-	794134-794143:834063-834102		PREDICTED: Rattus norvegicus hypothetical LOC501355 (LOC501355), mRNA.					
Rattus norvegicus	RefSeq	GI_62664288-S	ILMN_55224	PCDH12	XM_344673.3	XM_344673.3		116808	109506516	XM_344673.3	Pcdh12	XP_344674.3	ILMN_1349085	0001050128	S	4031	TCCCCACAGAGGAAGCAGGAGCCCAGGACTAACAAGCAACTGACTAGAGC	18	-	31197440-31197489	18p11	PREDICTED: Rattus norvegicus protocadherin 12 (Pcdh12), mRNA.	A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction [goid 16339] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62649280-S	ILMN_66869	FOXD3	XM_575873.2	XM_575873.2		29203	109475179	XM_575873.2	Foxd3	XP_575873.2	ILMN_1374000	0000770717	S	1604	TCAATGTCCACGCACCAGCCCCTGTCGATGAGCGGGACGACTGCCACCAT	5	+	120335639-120335688	5q33	PREDICTED: Rattus norvegicus forkhead box D3 (Foxd3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence IEA]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34866565-S	ILMN_284604	RGD1565732_PREDICTED	XR_008387.1	XR_008387.1		299935	109482230	XR_008387.1	RGD1565732_predicted		ILMN_1372704	0003060037	S	50	GGCCGTTCTGCCATCAACGAGGTGGTGACCCAAGAATACACCATCAACAC				7q32	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (predicted) (RGD1565732_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638479-S	ILMN_51515	MYCT1_PREDICTED	XM_214761.4	XM_214761.4		292264	109457715	XM_214761.4	Myct1_predicted	XP_214761.2	ILMN_1352179	0001990022	S	546	TCCACCACCCCATCCACCATCAGCACCGTACACAGTCCGAGCCGGCCAGA	1	+	36324594-36324643	1p11	PREDICTED: Rattus norvegicus myc target 1 (predicted) (Myct1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644333	ILMN_48094	LOC502590	XM_578076.1	XM_578076.1		502590	62644333	XM_578076.1	LOC502590	XP_578076.1	ILMN_1650787	0004560053	S	284	CTGAGTGGTCTGGTGGGAAGCATGTGATTAGGGCTGAGTGGGCTGATGGG					PREDICTED: Rattus norvegicus similar to cyclophilin A (LOC502590), mRNA.					
Rattus norvegicus	RefSeq	GI_62666194-S	ILMN_62627	LOC502447	XM_577928.1	XM_577928.1		502447	62666194	XM_577928.1	LOC502447	XP_577928.1	ILMN_1357057	0002190047	S	571	TGGGCATGGGGAACTCGAGCTCCAGCCACGAAGAGTCCCAGCATCCCCAA					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502447), mRNA.					
Rattus norvegicus	RefSeq	GI_62642978-S	ILMN_280056	RGD1311752_PREDICTED	XM_001065350.1	XM_001065350.1		294718	109465916	XM_001065350.1	RGD1311752_predicted	XP_001065350.1	ILMN_1360491	0003440292	S	668	GAAGGTGGGGAAGAATAATTTCAGACCACCCCCCAAGGTGGAGTCCAGCG				2q14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500031M22 (predicted) (RGD1311752_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577268-S	ILMN_303017	OLR398	NM_001000830.1	NM_001000830.1		405119	47577268	NM_001000830.1	Olr398	NP_001000830.1	ILMN_1363400	0006660056	S	655	GTTCATATTGGAGTCACTATCCTGAAGGCCCCCTCCATCAGGGGAATCTG	3	+	15722000-15722049	3p11	Rattus norvegicus olfactory receptor 398 (Olr398), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr398	Olr398
Rattus norvegicus	RefSeq	GI_62642895-S	ILMN_66490	LOC499523	XM_574848.1	XM_574848.1		499523	62642895	XM_574848.1	LOC499523	XP_574848.1	ILMN_1364625	0006130538	S	0	TTTCAGAAGATGGAGCCGAAAGCGAAGAAGGAAGCTCCTGCCCCTCCCAA				2q14	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC499523), mRNA.					
Rattus norvegicus	RefSeq	GI_16758819-I	ILMN_296137	RIMS2	NM_053945.1	NM_053945.1		116839	16758819	NM_053945.1	Rims2	NP_446397.1	ILMN_1375276	0002690739	I	3948	AGCTATTGTTGGTCTCTCACGGAAAAGTCGCAGTGCCTCCCAACTCAGCC	7	+	75197169-75197218	7q22	Rattus norvegicus regulating synaptic membrane exocytosis 2 (Rims2), transcript variant 1, mRNA.	The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nim2; Rim2	Nim2; Rim2
Rattus norvegicus	RefSeq	GI_62661059-S	ILMN_55308	LOC316935	XM_229514.4	XM_229514.4		316935	109501213	XM_229514.4	LOC316935	XP_229514.2	ILMN_1373307	0002510707	S	548	GGAAAGAGGTTCTGTGAGGAGGCCAGCAAGACCATGTACACCACAGATAT	15	+	4985364-4985413	15p16	PREDICTED: Rattus norvegicus similar to Spetex-2D protein (LOC316935), mRNA.					
Rattus norvegicus	RefSeq	GI_34876334-S	ILMN_55308	LOC316935	XM_229514.4	XM_229514.4		316935	109501213	XM_229514.4	LOC316935	XP_229514.2	ILMN_1369602	0000110601	S	7	GGGATTCCCTCAGTGCCTTTTAGGTTCACAAACAGGCATGTTTCACCAGC	15	+	4982246-4982282:4982283-4982295	15p16	PREDICTED: Rattus norvegicus similar to Spetex-2D protein (LOC316935), mRNA.					
Rattus norvegicus	RefSeq	GI_34875243-S	ILMN_54663	LOC361234	XM_346950.1	XM_346950.1		361234	34875243	XM_346950.1	LOC361234	XP_346951.1	ILMN_1367766	0004560121	S	176	CTGCTGCCCTGTTGCTGGTCCTTTCCCAGACAGAAAGGGGGAGTGCATGT					PREDICTED: Rattus norvegicus hypothetical LOC361234 (LOC361234), mRNA.					
Rattus norvegicus	RefSeq	GI_47577894-S	ILMN_300660	OLR115	NM_001000152.1	NM_001000152.1		293253	47577894	NM_001000152.1	Olr115	NP_001000152.1	ILMN_1362041	0000380348	S	598	GGAATCTCTGTGGCCCTTTCTGTGATAACAGTGGACCTAGGACTCATAGC	1	-	161363084-161363133	1q32	Rattus norvegicus olfactory receptor 115 (Olr115), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr115; ratchr1-161443812-161442859_ORF	Olr115; ratchr1-161443812-161442859_ORF
Rattus norvegicus	RefSeq	GI_62649881-S	ILMN_52290	LOC502990	XM_578498.1	XM_578498.1		502990	62649881	XM_578498.1	LOC502990	XP_578498.1	ILMN_1354714	0006620288	S	787	TGCCCAGGACGCTCAGGAAGCTGGGGAGCCACGTCTTATTACTCTGCCAA				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein dJ462O23.2 (LOC502990), mRNA.					
Rattus norvegicus	RefSeq	GI_28460707-S	ILMN_287961	TAAR7G	NM_175588.1	NM_175588.1		294131	28460707	NM_175588.1	Taar7g	NP_783178.1	ILMN_1358596	0001500563	S	866	ACTTCGTTGATTCCATCATTGATGCCTTCCTGGGTTTCATTACGCCCACG	1	-	21912559-21912608	1p12	Rattus norvegicus trace-amine-associated receptor 7g (Taar7g), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Ta9	Ta9
Rattus norvegicus	RefSeq	GI_62647183-S	ILMN_276495	LOC686257	XM_001073146.1	XM_001073146.1		686257	109473427	XM_001073146.1	LOC686257	XP_001073146.1	ILMN_1356170	0001940053	S	763	GGAACCCTGGTCAGTACTTCCAACACCTACGATGGGTCCGGCCTTGTCAC					PREDICTED: Rattus norvegicus similar to Thiamin pyrophosphokinase 1 (Thiamine pyrophosphokinase 1) (mTPK1) (LOC686257), mRNA.					
Rattus norvegicus	RefSeq	GI_62643448-S	ILMN_48362	STOML3_PREDICTED	XM_227141.3	XM_227141.3		295041	62643448	XM_227141.3	Stoml3_predicted	XP_227141.3	ILMN_1362460	0005420670	S	1764	ACATTTGTCAGGGCCAGAGGCACAGCGGGGGCAGAAGACCACAGGCTAAT				2q26	PREDICTED: Rattus norvegicus stomatin (Epb7.2)-like 3 (predicted) (Stoml3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658379-S	ILMN_69444	RGD1310835_PREDICTED	XM_213702.4	XM_213702.4		288447	109495071	XM_213702.4	RGD1310835_predicted	XP_213702.4	ILMN_1352872	0003610433	S	1652	GATGCTGATGGGAGTTGGCTGGAGTGTGATGACCTGAAGGGTCCGTGTGC	12	-	6320566-6320606:6322976-6322984	12p11	PREDICTED: Rattus norvegicus hypothetical LOC288447 (predicted) (RGD1310835_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658381-S	ILMN_69444	RGD1310835_PREDICTED	XM_213702.4	XM_213702.4		288447	109495071	XM_213702.4	RGD1310835_predicted	XP_213702.4	ILMN_1349293	0002570022	S	949	GTGGAGAAACACTCAGGCGCTGTGCTGGTTAGACTGTATCCTCTCGGCCC	12	-	6337955-6338004	12p11	PREDICTED: Rattus norvegicus hypothetical LOC288447 (predicted) (RGD1310835_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663102-S	ILMN_290809	RGD1566325_PREDICTED	XM_001063436.1	XM_001063436.1		498682	109460676	XM_001063436.1	RGD1566325_predicted	XP_001063436.1	ILMN_1372664	0002650093	S	1103	TCCCCATGAGTGTGGAAAATGTGGCAAAAAGTTTTCTAGCTCTTCCCGCC				17p14	PREDICTED: Rattus norvegicus similar to regulator of sex-limitation candidate 16 (predicted) (RGD1566325_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981235-S	ILMN_272848	MYH9	NM_013194.1	NM_013194.1		25745	6981235	NM_013194.1	Myh9	NP_037326.1	ILMN_1369965	0000670746	S	5882	CTGATGCCAAGGCGACCGAGTAGGGACTTCTGCTACCCAAGACGGATGGA	7	-	115681569-115681599:115681600-115681618	7q34	Rattus norvegicus myosin, heavy chain 9, non-muscle (Myh9), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence IEA]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence ISS]; A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence IEA]; A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively [goid 1931] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells. In animal cells, the contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis [goid 5826] [evidence ISS]; A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells. In animal cells, the contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis [goid 5826] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence ISS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence ISS]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IEA]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle [goid 212] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle [goid 212] [evidence IEA]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence ISS]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence IEA]; A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence ISS]; A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The directed orientation of T cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with antigen presenting cell [goid 1768] [evidence ISS]; The directed orientation of T cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with antigen presenting cell [goid 1768] [evidence IEA]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence IEA]; Progression through metaphase of meiosis I; analogous to mitotic metaphase [goid 7132] [evidence ISS]; Progression through metaphase of meiosis I; analogous to mitotic metaphase [goid 7132] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; A process whereby non-proliferating myoblasts fuse to existing fibres or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7520] [evidence ISS]; A process whereby non-proliferating myoblasts fuse to existing fibres or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7520] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; The process by which platelets bud from long processes extended by megakaryocytes [goid 30220] [evidence ISS]; The process by which platelets bud from long processes extended by megakaryocytes [goid 30220] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence ISS]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a uropod, a rigid membrane projection with related cytoskeletal components at the trailing edge of a lymphocyte or other cell in the process of migrating or being activated [goid 32796] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a uropod, a rigid membrane projection with related cytoskeletal components at the trailing edge of a lymphocyte or other cell in the process of migrating or being activated [goid 32796] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence ISS]; The cell cycle process whereby the directed movement of the meiotic spindle to a specific location in the cell occurs [goid 51295] [evidence ISS]; The cell cycle process whereby the directed movement of the meiotic spindle to a specific location in the cell occurs [goid 51295] [evidence IEA]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with both a protein or protein complex and a membrane, in order to maintain the localization of the protein at a specific location on the membrane [goid 43495] [evidence ISS]; Interacting selectively with both a protein or protein complex and a membrane, in order to maintain the localization of the protein at a specific location on the membrane [goid 43495] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IEA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47577794-S	ILMN_296553	OLR1232	NM_001000445.1	NM_001000445.1		300557	47577794	NM_001000445.1	Olr1232	NP_001000445.1	ILMN_1365167	0001570204	S	656	GCTTCATCCTCTCAAGCATCCTCAAAATAAACTCCACAGCAGGCAGATCC	8	+	40513264-40513313	8q22	Rattus norvegicus olfactory receptor 1232 (Olr1232), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1232	Olr1232
Rattus norvegicus	RefSeq	GI_57164098-S	ILMN_281029	GEMIN6	NM_001009466.1	NM_001009466.1		362688	57164098	NM_001009466.1	Gemin6	NP_001009466.1	ILMN_1355010	0002000053	S	893	TAGGTCAAATCAGAGGAAGTGAAGGCACCAGAACAGTGTCCCTTGTCCTG	6	+	3129962-3130011	6q11	Rattus norvegicus gem (nuclear organelle) associated protein 6 (Gemin6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence ISS]	The aggregation, arrangement and bonding together of the spliceosome, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions [goid 245] [evidence IEA]; The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659933-S	ILMN_56234	SMYD2	XM_213972.4	XM_213972.4		289372	109498302	XM_213972.4	Smyd2	XP_213972.2	ILMN_1351337	0001570162	S	1352	TTCCGTCAGAAACCTCACAGTCACCCCAGCCTTCTGCAAGCCTCGCCATG	13	-	106160323-106160372	13q27	PREDICTED: Rattus norvegicus SET and MYND domain containing 2 (Smyd2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660121-S	ILMN_281615	LOC498330	NM_001017495.1	NM_001017495.1		498330	62945349	NM_001017495.1	LOC498330	NP_001017495.1	ILMN_1361435	0004200097	S	1323	CGGCACGTGTGTGTGAAAGGGACACAGAGGGACAAAGACGGCCTCACTGT	14	+	7230131-7230180	14p22	Rattus norvegicus similar to hypothetical protein MGC26744 (LOC498330), mRNA.					
Rattus norvegicus	RefSeq	GI_62646715-S	ILMN_55085	LOC499988	XM_575342.1	XM_575342.1		499988	62646715	XM_575342.1	LOC499988	XP_575342.1	ILMN_1353369	0005220019	S	1613	TGCAGTAAAACTAGGCTCAACTTCTACTGAGGCTGCCCTAGGCAAAGCCC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC499988), mRNA.					
Rattus norvegicus	RefSeq	GI_62649365-S	ILMN_276343	RGD1561212_PREDICTED	XM_001062565.1	XM_001062565.1		502976	109476849	XM_001062565.1	RGD1561212_predicted	XP_001062565.1	ILMN_1375015	0000450632	S	1333	GCCAAAAGGCAACCCGAGATAATCCTCTTTGCTACAGCCACCTGCCCTCG				5q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732496O08 (predicted) (RGD1561212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645300	ILMN_52188	FKBP7_PREDICTED	XM_215758.4	XM_215758.4		295672	109468334	XM_215758.4	Fkbp7_predicted	XP_215758.4	ILMN_1650414	0002640528	S	526	GCAAATAGACACGGACAATGACAGGCAGCTCTCCAAGGCCGAGATAGAGC	3	-	59361996-59362003:59366186-59366227	3q23	PREDICTED: Rattus norvegicus FK506 binding protein 7 (predicted) (Fkbp7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661920-S	ILMN_68483	MRPL52_PREDICTED	XM_341312.3	XM_341312.3		361037	109501594	XM_341312.3	Mrpl52_predicted	XP_341313.3	ILMN_1349298	0004670632	S	231	GCTGCTGACACAGGAAATGGATGCAGGATTACAGGCATGGAAGCTCAGGC	15	+	32491449-32491498	15p13	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L52 (predicted), transcript variant 2 (Mrpl52_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665791-A	ILMN_297940	SLC37A1	NM_001011944.1	NM_001011944.1		294321	58865465	NM_001011944.1	Slc37a1	NP_001011944.1	ILMN_1376690	0002190301	S	2523	CAGTACCGACCGTGTCAAGATGGGAATGTCTGCGAAGCAATAAGCCCCCC	20	+	9744696-9744745	20p12	Rattus norvegicus solute carrier family 37 (glycerol-3-phosphate transporter), member 1 (Slc37a1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646769-S	ILMN_57664	RGD1561053_PREDICTED	XM_575355.2	XM_575355.2		500000	109471687	XM_575355.2	RGD1561053_predicted	XP_575355.1	ILMN_1354544	0004780347	S	607	GTTTGTCACGATCGCTAGCTCAGGGGGTCTGTTCATGACTGCTCTTCTGC	4	+	25216388-25216437	4q12	PREDICTED: Rattus norvegicus similar to Claudin 12 (predicted) (RGD1561053_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9910233-S	ILMN_295277	IFIT1	NM_020096.1	NM_020096.1		56824	9910233	NM_020096.1	Ifit1	NP_064481.1	ILMN_1355901	0000430450	S	2103	GGTAGAGTCTGCTGGTGCCATTGTAAAGGACGCACCTCTATGTTTGCATG				1q52	Rattus norvegicus interferon-induced protein with tetratricopeptide repeats 1 (Ifit1), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Garg16	Garg16
Rattus norvegicus	RefSeq	GI_62665250-S	ILMN_268850	RGD1560268_PREDICTED	XM_001076847.1	XM_001076847.1		307829	109508859	XM_001076847.1	RGD1560268_predicted	XP_001076847.1	ILMN_1350278	0001450403	S	10980	GCCCTCGATGCCAACAGACGACTATTCGGAGGAGTCTGACACGGATCTCA				19q12	PREDICTED: Rattus norvegicus similar to AT motif-binding factor (predicted) (RGD1560268_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393214-S	ILMN_271291	CTH	NM_017074.1	NM_017074.1		24962	8393214	NM_017074.1	Cth	NP_058770.1	ILMN_1370828	0006980731	S	1254	GCCAAGGGGCCAGACCTTCTGAATAACTGGACAGACCATTAAGGAGCATC	2	-	256057000-256057049	2q45	Rattus norvegicus cystathionase (cystathionine gamma-lyase) (Cth), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid [goid 19344] [evidence IDA]; The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes [goid 19346] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]; The chemical reactions and pathways involving homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. Homocysteine is an important intermediate in the metabolic reactions of its S-methyl derivative, methionine [goid 50667] [evidence IDA]	Catalysis of the reaction: cystathionine + H2O = L-homocysteine + NH3 + pyruvate [goid 4121] [evidence IDA]; Catalysis of the reaction: L-cystathionine + H2O = L-cysteine + NH3 + 2-oxobutanoate [goid 4123] [evidence IEA]; Catalysis of the reaction: L-cystathionine + H2O = L-cysteine + NH3 + 2-oxobutanoate [goid 4123] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence TAS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	H	H
Rattus norvegicus	RefSeq	GI_62657276-S	ILMN_263512	RGD1559578_PREDICTED	XM_001081636.1	XM_001081636.1		287783	109492128	XM_001081636.1	RGD1559578_predicted	XP_001081636.1	ILMN_1367769	0000940397	S	18	AAGACAGAGAAGAGGCTGGCAGGGTGGAAGGAACGCCGTAGCCGATTTGG				10q32.1	PREDICTED: Rattus norvegicus RGD1559578 (predicted) (RGD1559578_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638436-S	ILMN_49414	EYA4_PREDICTED	XM_217715.4	XM_217715.4		292172	109457652	XM_217715.4	Eya4_predicted	XP_217715.4	ILMN_1359246	0006770019	S	2523	GCACAACATGCCCTTTTGGAGGATATCAAGCCACTCGGACCTCTTGGCTC	1	+	22911703-22911703:22914893-22914941	1p12	PREDICTED: Rattus norvegicus eyes absent 4 homolog (Drosophila) (predicted) (Eya4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576732-S	ILMN_274270	OLR83	NM_001000136.1	NM_001000136.1		293226	47576732	NM_001000136.1	Olr83	NP_001000136.1	ILMN_1356429	0006380167	S	537	TTCCTATTGTGAACACATGGGTATTGCCAAACTGTCCTGTGGGAACATCC	1	+	160956271-160956320	1q32	Rattus norvegicus olfactory receptor 83 (Olr83), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-161034757-161035695_ORF; Olr83	ratchr1-161034757-161035695_ORF; Olr83
Rattus norvegicus	RefSeq	GI_27708639-S	ILMN_161794	LOC317464	XM_228915.1	XM_228915.1			27708639	XM_228915.1	LOC317464		ILMN_2040532	0007150114	S	1728	CTTCCCGGAGTCGGCTTATGTTGCTGCCTATCTTAGTCGGTGCTTGGAAG										
Rattus norvegicus	RefSeq	GI_62648636-S	ILMN_56208	LOC500409	XM_575771.1	XM_575771.1		500409	62648636	XM_575771.1	LOC500409	XP_575771.1	ILMN_1371635	0003840504	S	2430	GCCTGGGCCTTATCTTTTGGTGGAGTGAAAAAACGTGGAGCCGTGGAAGC				5q13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20171 (LOC500409), mRNA.					
Rattus norvegicus	RefSeq	GI_62645204-S	ILMN_288238	RGD1561141_PREDICTED	XR_007837.1	XR_007837.1		311122	109470073	XR_007837.1	RGD1561141_predicted		ILMN_1367061	0006100092	S	2495	CGTGTGGTACTGTCTGCGCTGGGGTCAACAACCTTCTACACGACCTCTAC				3q21	PREDICTED: Rattus norvegicus similar to solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (predicted) (RGD1561141_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645223-S	ILMN_288238	RGD1561141_PREDICTED	XR_007837.1	XR_007837.1		311122	109470073	XR_007837.1	RGD1561141_predicted		ILMN_1370292	0003130092	S	792	CATCCGGCTGCACTTTGGGCACAACCGCAAGAAGCACCTGAACTATGTGG				3q21	PREDICTED: Rattus norvegicus similar to solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (predicted) (RGD1561141_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718191-S	ILMN_70023	LOC501318	XM_576730.1	XM_576730.1		501318	62718191	XM_576730.1	LOC501318	XP_576730.1	ILMN_1367948	0004850139	S	281	TGAATCCAACAAGTTCACTTGTGTTCTTCTACCTACAGACGCTGGGAGAG					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC501318), mRNA.					
Rattus norvegicus	RefSeq	GI_62663562-S	ILMN_268055	ALDH5A1	XM_001062926.1	XM_001062926.1		291133	109505748	XM_001062926.1	Aldh5a1	XP_001062926.1	ILMN_1372959	0004150059	S	1583	GTCCGGCCTTGGGCGAGAAGGGTCCAAGTATGGCATTGACGAATATCTAG				17p11	PREDICTED: Rattus norvegicus aldehyde dehydrogenase family 5, subfamily A1, transcript variant 3 (Aldh5a1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving acetate, the anion of acetic acid [goid 6083] [evidence ISS]; The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle [goid 6105] [evidence ISS]; The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle [goid 6105] [evidence IDA]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence ISS]; The chemical reactions and pathways involving glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue [goid 6650] [evidence ISS]; The chemical reactions and pathways involving glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue [goid 6650] [evidence IEA]; The chemical reactions and pathways involving glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. They are neutral glycolipids containing equimolar amounts of fatty acid, glucose, and sphingosine or a sphingosine derivative [goid 6678] [evidence ISS]; The chemical reactions and pathways involving glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. They are neutral glycolipids containing equimolar amounts of fatty acid, glucose, and sphingosine or a sphingosine derivative [goid 6678] [evidence IEA]; The chemical reactions and pathways involving galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group [goid 6681] [evidence ISS]; The chemical reactions and pathways involving galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group [goid 6681] [evidence IEA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms [goid 9448] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms [goid 9450] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms [goid 9450] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22904] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42135] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell [goid 42135] [evidence IEA]; The chemical reactions and pathways involving fatty acids with a chain length of less than 8 carbons [goid 46459] [evidence ISS]; The chemical reactions and pathways involving fatty acids with a chain length of less than 8 carbons [goid 46459] [evidence IEA]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [pmid 7814412] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms [goid 9450] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms [goid 9450] [pmid 7814412] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [pmid 7814412] [evidence IDA]	Catalysis of the reaction: succinate semialdehyde + NAD+ + H2O = succinate + NADH + H+ [goid 4777] [evidence IDA]; Catalysis of the reaction: succinate semialdehyde + NAD+ + H2O = succinate + NADH + H+ [goid 4777] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP [goid 16620] [evidence IEA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IPI]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]; Catalysis of the reaction: succinate semialdehyde + NAD+ + H2O = succinate + NADH + H+ [goid 4777] [evidence ISS]; Catalysis of the reaction: succinate semialdehyde + NAD+ + H2O = succinate + NADH + H+ [goid 4777] [pmid 7814412] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556920-S	ILMN_278291	UBXD3	NM_001013093.1	NM_001013093.1		298577	61556920	NM_001013093.1	Ubxd3	NP_001013111.1	ILMN_1366859	0002320014	S	1539	GCCTGGGCTACTTTTGAGTGGACTGACGGTTGGAGCCTGGTAACTCCTGT	5	-	157530653-157530702	5q36	Rattus norvegicus UBX domain containing 3 (Ubxd3), mRNA.					
Rattus norvegicus	RefSeq	GI_62645510-S	ILMN_62574	LOC295985	XM_230369.3	XM_230369.3		295985	62645510	XM_230369.3	LOC295985	XP_230369.3	ILMN_1358405	0000580601	S	1197	CTCCAGAAGATCAAGATGTCCAAGCTAACCCCAGAGGGCGCTCAGCCAAG				3q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610027B03 (predicted) (LOC295985), mRNA.					
Rattus norvegicus	RefSeq	GI_62653642-S	ILMN_296565	RGD1310503_PREDICTED	XM_001067688.1	XM_001067688.1		315645	109484651	XM_001067688.1	RGD1310503_predicted	XP_001067688.1	ILMN_1353584	0003060128	S	960	AGAGATTGCTAGTTCAGAAGTCCAGGTGGAGGCTAAGACACCTGCCTACG				8q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700059L22 (predicted) (RGD1310503_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653029-S	ILMN_296560	MLL2_PREDICTED	XM_001062568.1	XM_001062568.1		362996	109482864	XM_001062568.1	Mll2_predicted	XP_001062568.1	ILMN_1355297	0004230091	S	5121	CCGGATAAACAATGAGCACGTGATTGACGCCACACTGACCGGAGGCCCTG					PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia 2 (predicted) (Mll2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578012-S	ILMN_279621	OLR1071	NM_001000063.1	NM_001000063.1		288823	47578012	NM_001000063.1	Olr1071	NP_001000063.1	ILMN_1361986	0003940605	S	321	TGCACTCTTCATTGTGACTGAAGGATTTCTCCTGGCCGCCATGGCCTATG	7	-	8424628-8424677	7q11	Rattus norvegicus olfactory receptor 1071 (Olr1071), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-8424998-8424057_ORF; Olr1071	ratchr7-8424998-8424057_ORF; Olr1071
Rattus norvegicus	RefSeq	GI_61557303-S	ILMN_266598	SNAPC3	NM_001013212.1	NM_001013212.1		362537	61557303	NM_001013212.1	Snapc3	NP_001013230.1	ILMN_1356048	0002630601	S	1085	ACAGCTAGATGGGTGACAAACAATGACACCTTTGCACCAGAGGATCCATG	5	+	102299798-102299805:102301790-102301831	5q31	Rattus norvegicus small nuclear RNA activating complex, polypeptide 3 (Snapc3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC108839	MGC108839
Rattus norvegicus	RefSeq	GI_47577944-S	ILMN_269403	OLR1124	NM_001000426.1	NM_001000426.1		300392	47577944	NM_001000426.1	Olr1124	NP_001000426.1	ILMN_1359127	0005570402	S	889	ATGAAGGAGGCCCTGAAGAAAGTTGTTGGTAGGATAGCCTCTCTTCTGTG	8	+	16920103-16920152	8q13	Rattus norvegicus olfactory receptor 1124 (Olr1124), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1124; ratchr8-16919215-16920153_ORF	Olr1124; ratchr8-16919215-16920153_ORF
Rattus norvegicus	RefSeq	GI_62666816-S	ILMN_50480	LOC302680	XM_217613.3	XM_217613.3		302680	62666816	XM_217613.3	LOC302680	XP_217613.3	ILMN_1355479	0006100504	S	1531	TTCAAGAGCCCTGGGAATGCCCTTGGAGGCTAGGGCCAAGACCAAGTCAG				Xq21	PREDICTED: Rattus norvegicus similar to CXORF15 (LOC302680), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62659070-S	ILMN_64472	EP400	XM_222251.4	XM_222251.4		304569	109496173	XM_222251.4	Ep400	XP_222251.4	ILMN_1359427	0005080411	S	10433	TAGGCAAAGCCCCATCCTTCTGTCTTGTATGCTGTGTTGGGGGAAAGCGC	12	+	46143048-46143097	12q16	PREDICTED: Rattus norvegicus E1A binding protein p400 (Ep400), mRNA.					
Rattus norvegicus	RefSeq	GI_48675842-S	ILMN_296107	UCP3	NM_013167.2	NM_013167.2		25708	48675842	NM_013167.2	Ucp3	NP_037299.1	ILMN_1352235	0006220138	S	2201	CTCAGTGGGGTCAATTCAGGGGACCCACATGGTGGAAGGACAGGATGGAC	1	+	157909434-157909483	1q32	Rattus norvegicus uncoupling protein 3 (mitochondrial, proton carrier) (Ucp3), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence TAS]; Catalysis of the transfer of protons from mitochondrial intermembrane space into mitochondrial matrix, dissipating the proton gradient across the mitochondrial inner membrane established by the electron transport chain during the oxidative phosphorylation (proton leak). Proton leak uncouples the processes of electron transport/proton generation and ATP synthesis [goid 17077] [evidence IEA]; Catalysis of the transfer of protons from mitochondrial intermembrane space into mitochondrial matrix, dissipating the proton gradient across the mitochondrial inner membrane established by the electron transport chain during the oxidative phosphorylation (proton leak). Proton leak uncouples the processes of electron transport/proton generation and ATP synthesis [goid 17077] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644177-S	ILMN_63112	GPR61_PREDICTED	XM_227581.3	XM_227581.3		310780	109465437	XM_227581.3	Gpr61_predicted	XP_227581.1	ILMN_1352315	0004210066	S	2324	GCATGGGAAGGGTGGGGTCTCCATAGTCCACGAAATGCCTCCTTGTTCTC	2	-	203709170-203709219	2q34	PREDICTED: Rattus norvegicus G protein-coupled receptor 61 (predicted) (Gpr61_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577206-S	ILMN_262664	OLR361	NM_001000556.1	NM_001000556.1		365413	47577206	NM_001000556.1	Olr361	NP_001000556.1	ILMN_1355032	0004280372	S	783	GCAGCCAAGCTCTCGACATGCAATGGACACTGATAAAGTGGTATCTGTCT	1	+	216412766-216412815	1q43	Rattus norvegicus olfactory receptor 361 (Olr361), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-216570414-216571346_ORF; Olr361	ratchr1-216570414-216571346_ORF; Olr361
Rattus norvegicus	RefSeq	GI_62662533-S	ILMN_56977	LOC502068	XM_580237.1	XM_580237.1		502068	62662533	XM_580237.1	LOC502068	XP_580237.1	ILMN_1359093	0002760273	S	702	GTCGATTTCTTCGGCTGTGGCTTGGCCTGCTGCATCAGTCCGTTTTCTTC					PREDICTED: Rattus norvegicus LOC502068 (LOC502068), mRNA.					
Rattus norvegicus	RefSeq	GI_62650387-S	ILMN_267689	RGD1562206_PREDICTED	XM_001062292.1	XM_001062292.1		313905	109478970	XM_001062292.1	RGD1562206_predicted	XP_001062292.1	ILMN_1349267	0006510609	S	1262	GGTGGAGGCTTCGCCACAGGCTTCAAGTGCAGAGGTAAATGCTTCTCCTC				6q13	PREDICTED: Rattus norvegicus similar to STAGA complex 65 gamma subunit (predicted) (RGD1562206_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647682-S	ILMN_266595	RGD1305975_PREDICTED	XM_001072676.1	XM_001072676.1		297388	109473776	XM_001072676.1	RGD1305975_predicted	XP_001072676.1	ILMN_1359425	0007000300	S	157	CCACGGCTATCCAAGTCACAGACATCTCAGGAGGCTGCGGGGCGATGTAT				4q34	PREDICTED: Rattus norvegicus similar to BolA domain-containing protein like (11.4 kD) (1P25) (predicted) (RGD1305975_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650900-S	ILMN_59992	CHURC1_PREDICTED	XM_216740.4	XM_216740.4		299154	109478371	XM_216740.4	Churc1_predicted	XP_216740.1	ILMN_1356595	0003710279	S	70	GGGGGAACACCTGTCTGGAGAATGGCTCGTTCTTACTGAACTTTGCAGGC	6	+	99349292-99349293:99355291-99355338	6q24	PREDICTED: Rattus norvegicus churchill domain containing 1 (predicted) (Churc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577412-S	ILMN_285710	OLR697	NM_001001064.1	NM_001001064.1		405952	47577412	NM_001001064.1	Olr697	NP_001001064.1	ILMN_1369622	0004810400	S	483	TCAGCTCCCTTTCTGTGGCCCAAATATCATTGACAGCTTTGTATGTGATA	3	-	73755018-73755067	3q24	Rattus norvegicus olfactory receptor 697 (Olr697), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr697	Olr697
Rattus norvegicus	RefSeq	GI_8393947-S	ILMN_289223	PGAM2	NM_017328.1	NM_017328.1		24959	8393947	NM_017328.1	Pgam2	NP_059024.1	ILMN_1360833	0000450451	S	380	CCCGCCACCACCTATGGACGAGAAACACAACTACTACGCCTCCATCAGCA	14	-	86467737-86467786	14q21	Rattus norvegicus phosphoglycerate mutase 2 (muscle) (Pgam2), mRNA.		The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: 3-phospho-D-glyceroyl phosphate = 2,3-bisphospho-D-glycerate [goid 4082] [evidence IEA]; Catalysis of the reaction: 2,3-diphosphoglycerate + H2O = 3-phosphoglycerate + phosphate [goid 4083] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate [goid 4619] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate [goid 4619] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate; requires the cofactor 2,3-bisphosphoglycerate [goid 46538] [evidence IMP]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IMP]	Pgmut; D14Mgh1; PGAM-M	Pgmut; D14Mgh1; PGAM-M
Rattus norvegicus	RefSeq	GI_47575876-S	ILMN_290882	C2	NM_172222.2	NM_172222.2		24231	47575876	NM_172222.2	C2	NP_757376.2	ILMN_1365436	0001740072	S	2495	ACTGTGCCCTCCCGAGAAGCAAGTGTCTCTCTAGTGTGGATGACCCGTGC				20p12	Rattus norvegicus complement component 2 (C2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway [goid 6956] [evidence IEA]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16924013-S	ILMN_273338	CCL17	NM_057151.1	NM_057151.1		117518	16924013	NM_057151.1	Ccl17	NP_476492.1	ILMN_2039446	0004250047	S	3	GATGTCACTTCAGATGCTGCTCCTGGCTGCCCTGCTTCTGGGGACTTCTC	19	-	10642775-10642824	19p12	Rattus norvegicus chemokine (C-C motif) ligand 17 (Ccl17), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scya17; Tarc	Scya17; Tarc
Rattus norvegicus	RefSeq	GI_58865479-A	ILMN_295613	CHST1	NM_001011955.1	NM_001011955.1		295934	58865479	NM_001011955.1	Chst1	NP_001011955.1	ILMN_1376641	0002260280	S	2080	GCACACCCTTGCCTGGTGGTGAGCAGGGTTTTACTGTGAGGTGAATTGGG	3	+	77008591-77008640	3q24	Rattus norvegicus carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (Chst1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The chemical reactions and pathways involving keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues [goid 42339] [evidence IEA]; The chemical reactions and pathways involving keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues [goid 42339] [evidence ISS]	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + keratan = adenosine 3',5'-bisphosphate + keratan 6'-sulfate [goid 45130] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + keratan = adenosine 3',5'-bisphosphate + keratan 6'-sulfate [goid 45130] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6981333-S	ILMN_292249	PAX6	NM_013001.1	NM_013001.1		25509	6981333	NM_013001.1	Pax6	NP_037133.1	ILMN_1362288	0000870014	S	1796	GCCCGGGAATGGACTAGAAACCAGGACCTTTGCGTACAGAAGGCACGGTA	3	+	91148621-91148670	3q32	Rattus norvegicus paired box gene 6 (Pax6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IC ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IMP]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The establishment, maintenance and elaboration of the dorsal/ventral axis [goid 9950] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process whose specific outcome is the progression of the pallium over time, from its formation to the mature structure. The pallium is the roof region of the telencephalon [goid 21543] [evidence ISS]; The creation of specific areas of progenitor domains along the anterior-posterior axis of the developing forebrain [goid 21797] [evidence ISS]; The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain [goid 21798] [evidence ISS]; The commitment of neuronal precursor cells to become specialized types of neurons in the forebrain [goid 21902] [evidence ISS]; The process whose specific outcome is the creation of the forebrain-midbrain boundary [goid 21905] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation [goid 30858] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence IDA]; A process by which a protein is transported to, or maintained in, a location within an organelle [goid 33365] [evidence ISS]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]; Any process that activates or enables a cell to adopt a specific fate [goid 42660] [evidence IMP]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that modulates the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50767] [evidence ISS]; Any process that modulates the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50767] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA) [goid 3680] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence RCA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641580-S	ILMN_70185	RGD1309350_PREDICTED	XM_215112.4	XM_215112.4		293613	109459577	XM_215112.4	RGD1309350_predicted	XP_215112.4	ILMN_1362743	0000460315	S	269	GGCCCCCAGTCAGCAGTGGATGGAGCTGAGAACAAGCTACACAAACCTGG	1	+	200985794-200985829:200986823-200986836	1q41	PREDICTED: Rattus norvegicus similar to transthyretin (4L369) (predicted) (RGD1309350_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507072-S	ILMN_301110	NPTN	NM_019380.1	NM_019380.1		56064	9507072	NM_019380.1	Nptn	NP_062253.1	ILMN_1373500	0002640129	S	1905	GGGCTTACTTACCCTATAACTTTAAGAACCTGGAACAGTCCACTGAACGG	8	+	62465688-62465737	8q24	Rattus norvegicus neuroplastin (Nptn), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [pmid 11431460] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [pmid 11431460] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [pmid 11431460] [evidence TAS]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [pmid 10759566] [evidence IDA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [pmid 11431460] [evidence TAS]; A process that increases long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48170] [pmid 10759566] [evidence IMP]	Interacting selectively with a cell adhesion molecule [goid 50839] [pmid 10759566] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_58865929-A	ILMN_288399	FXR1	NM_001012179.1	NM_001012179.1		361927	58865929	NM_001012179.1	Fxr1	NP_001012179.1	ILMN_1376462	0004560463	S	1598	CCGTCGTAGGCGGTCTCGTAGACGAAGGACTGATGAAGATGCTGTTCTGA				2q25	Rattus norvegicus fragile X mental retardation, autosomal homolog 1 (Fxr1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix [goid 43034] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647957-S	ILMN_68454	LOC497795	XM_579630.1	XM_579630.1		497795	62647957	XM_579630.1	LOC497795	XP_579630.1	ILMN_1368013	0006370576	S	2385	GCTGGGGTGGAGACCATCACTGTGTATGAAGAGATCCTGAGGCAGGTTCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_134376 (LOC497795), mRNA.					
Rattus norvegicus	RefSeq	GI_62644771-S	ILMN_48186	LOC499759	XM_575095.1	XM_575095.1		499759	62644771	XM_575095.1	LOC499759	XP_575095.1	ILMN_1366185	0006450504	S	3558	TCCCTCAAGCACACTAGCGAGGAGGAGAAGGCAGGGACAGGAGATGCTGG				3p13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932418E24 (LOC499759), mRNA.					
Rattus norvegicus	RefSeq	GI_62661573-S	ILMN_50043	PHF11_PREDICTED	XM_341331.2	XM_341331.2		361051	62661573	XM_341331.2	Phf11_predicted	XP_341332.2	ILMN_1360511	0007040685	S	510	AGACTCATGAAGGAAGAGCCTCACGGCCACAAAGAAGCAGCTGTCAAAGC				15p12	PREDICTED: Rattus norvegicus PHD finger protein 11 (predicted) (Phf11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655008-S	ILMN_67954	BIVM_PREDICTED	XM_237103.3	XM_237103.3		316371	62655008	XM_237103.3	Bivm_predicted	XP_237103.3	ILMN_1352844	0005900242	S	1622	GAAGCAGTATGGGCGTCTGGGCAGGTCCTTCAGTGCTAGTTTCCACCAGG					PREDICTED: Rattus norvegicus basic, immunoglobulin-like variable motif containing (predicted) (Bivm_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718754-S	ILMN_58668	LOC501464	XM_576875.1	XM_576875.1		501464	62718754	XM_576875.1	LOC501464	XP_576875.1	ILMN_1365418	0002370167	S	958	AAGCCATCACTACAGAAGGTGGATGTGAGGAGGAGACTTCCCCGGAGGAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05 (LOC501464), mRNA.					
Rattus norvegicus	RefSeq	GI_62646390-S	ILMN_279103	RGD1306534_PREDICTED	XR_008866.1	XR_008866.1		311647	109471358	XR_008866.1	RGD1306534_predicted		ILMN_1373562	0005690736	S	5443	GGCTGAACAGCTGTCACTCCATGGACACTTGGGAGCCCTGCTGGCTTCCA				3q42	PREDICTED: Rattus norvegicus similar to P-Rex1 (predicted) (RGD1306534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58652153-A	ILMN_302746	TRIM26	NM_001011665.1	NM_001011665.1		309586	58652153	NM_001011665.1	Trim26	NP_001011665.1	ILMN_1376904	0002450017	S	1508	GCTGCATGGTTGGAGTGGCCAAAGACTCCGTGAAGAGGAAAGGGAACCTC	20	-	1803935-1803984	20p12	Rattus norvegicus tripartite motif-containing 26 (Trim26), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Znf173	Znf173
Rattus norvegicus	RefSeq	GI_56090609-S	ILMN_273985	CDK9	NM_001007743.1	NM_001007743.1		362110	56090609	NM_001007743.1	Cdk9	NP_001007744.1	ILMN_1366218	0001980102	S	1472	ATCCCCAGCCCTTCCTCTGGATGAGGATGTGAAGGACAGAGGCATCTCCA	3	-	11673014-11673063	3p11	Rattus norvegicus cyclin-dependent kinase 9 (Cdk9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + (DNA-directed RNA polymerase) = ADP + phospho-(DNA-directed RNA polymerase) [goid 8353] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a small nuclear RNA (snRNA) [goid 17069] [evidence ISS]; Interacting selectively with a small nuclear RNA (snRNA) [goid 17069] [evidence IEA]	MGC95175	MGC95175
Rattus norvegicus	RefSeq	GI_13540645-S	ILMN_285424	SLC26A5	NM_030840.1	NM_030840.1		83819	13540645	NM_030840.1	Slc26a5	NP_110467.1	ILMN_1361417	0002350113	S	2186	CCCAGGAAGATATGGAGCCCAATGCCACGCCCACCACACCGGAAGCATAA	4	+	8697490-8697539	4q11	Rattus norvegicus solute carrier family 26, member 5 (prestin) (Slc26a5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence TAS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence IEA]	Pres; prestin	Pres; prestin
Rattus norvegicus	RefSeq	GI_62641178-S	ILMN_264548	PIK3C2A_PREDICTED	XM_001075241.1	XM_001075241.1		361632	109462724	XM_001075241.1	Pik3c2a_predicted	XP_001075241.1	ILMN_1361702	0000840372	S	5633	GTGTGTTCACAGACACCAAAGGAAAGATGCGGCTGCTACTCAACAGGCTG				1q34-q35	PREDICTED: Rattus norvegicus phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide (predicted) (Pik3c2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41386754-S	ILMN_290905	FGFR1OP2	NM_201421.1	NM_201421.1		362463	41386754	NM_201421.1	Fgfr1op2	NP_958824.1	ILMN_1373016	0002060647	S	2482	GTAGGAAAGGGCCAGTACCCCAGGTGATAAACCGTTGTCATGCAGAGGCC	4	+	184173599-184173648	4q44	Rattus norvegicus FGFR1 oncogene partner 2 (Fgfr1op2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			Wit3.0	Wit3.0
Rattus norvegicus	RefSeq	GI_62659303-S	ILMN_271153	ELK4_PREDICTED	XM_001059832.1	XM_001059832.1		304786	109498616	XM_001059832.1	Elk4_predicted	XP_001059832.1	ILMN_1350064	0004780044	S	1194	TGAATCAGTGGCTCCTCAGCCCATGGAACGTCCAGAGAACTTGTCACTGG				13q13	PREDICTED: Rattus norvegicus ELK4, member of ETS oncogene family (predicted) (Elk4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24308495-S	ILMN_274879	ZFP597	NM_153732.1	NM_153732.1		266774	24308495	NM_153732.1	Zfp597	NP_714954.1	ILMN_1361865	0004050039	S	1689	TTCGACTGCTGGGCATGGTGGCCTACACTTTAAGTCCCAAGCACTCAGGC	10	+	11926622-11926671	10q12	Rattus norvegicus zinc finger protein 597 (Zfp597), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Hit4	Hit4
Rattus norvegicus	RefSeq	GI_62647714-S	ILMN_270938	ALMS1_PREDICTED	XM_001074073.1	XM_001074073.1		297408	109473826	XM_001074073.1	Alms1_predicted	XP_001074073.1	ILMN_1370484	0000060736	S	9472	GGGAAGACGGAAATGATTCGGAGGACCAGACGGTTTTATGAGCAGCTTCC				4q34	PREDICTED: Rattus norvegicus Alstrom syndrome 1 (predicted) (Alms1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662168-S	ILMN_296929	IL17RB_PREDICTED	XM_001063391.1	XM_001063391.1		306247	109503817	XM_001063391.1	Il17rb_predicted	XP_001063391.1	ILMN_1358102	0004120152	S	1293	CAGCAGCCAGACTCATCTGCACAAATACCTGGTGGTCTATCTTGGGGGAG				16p16	PREDICTED: Rattus norvegicus interleukin 17 receptor B (predicted) (Il17rb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27667441-S	ILMN_296929	IL17RB_PREDICTED	XM_001063391.1	XM_001063391.1		306247	109503817	XM_001063391.1	Il17rb_predicted	XP_001063391.1	ILMN_2039892	0004860039	S	1401	GGACGCCCCAGCTTTCCACACAGAACTTCTCAAGGCTACGCAAAGCATGC				16p16	PREDICTED: Rattus norvegicus interleukin 17 receptor B (predicted) (Il17rb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978814-A	ILMN_262389	ESR1	NM_012689.1	NM_012689.1		24890	6978814	NM_012689.1	Esr1	NP_036821.1	ILMN_1376759	0000610162	S	1483	GCATGGTGGAGATCTTTGACATGTTGCTGGCTACGTCAAGTCGATTCCGC	1	+	35759770-35759819	1p11	Rattus norvegicus estrogen receptor 1 (Esr1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IPI]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of retinoic acid receptor signaling pathway activity [goid 48386] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Combining with estrogen to initiate a change in cell activity [goid 30284] [evidence TAS]; Combining with estrogen to initiate a change in cell activity [goid 30284] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]	ER-alpha; Esr; RNESTROR	ER-alpha; Esr; RNESTROR
Rattus norvegicus	RefSeq	GI_62641729-S	ILMN_276301	CD248_PREDICTED	XM_001069761.1	XM_001069761.1		293669	109463365	XM_001069761.1	Cd248_predicted	XP_001069761.1	ILMN_1371773	0007050309	S	2650	CAGGACCTCAAGGGGTGGGTGCTGGGATCTTCTCCAATAAATGGCGTGCC				1q43	PREDICTED: Rattus norvegicus CD248 antigen, endosialin (predicted) (Cd248_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28212247-S	ILMN_62022	TAAR7D	NM_175591.2	NM_175591.2		294134	82524841	NM_175591.2	Taar7d	NP_783181.2	ILMN_1349388	0005890358	S	594	CCTCACCTGTGTGGGTGGCTGTCAAATCCCAATGAATCAAAAGTTTGTCC	1	-	21934794-21934843	1p12	Rattus norvegicus trace-amine-associated receptor 7d (Taar7d), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	TA15	TA15
Rattus norvegicus	RefSeq	GI_62647167-S	ILMN_53743	LOC502752	XM_578250.1	XM_578250.1		502752	62647167	XM_578250.1	LOC502752	XP_578250.1	ILMN_1350648	0003190441	S	1103	ATTAGGAACAGGAGGGGGAGTTCTAGATGGACGTGCGACGGATGCAGGGG					PREDICTED: Rattus norvegicus similar to T cell receptor variable region:SUBUNIT=beta:ISOTYPE=12 (LOC502752), mRNA.					
Rattus norvegicus	RefSeq	GI_20302005-S	ILMN_273934	SPDYA	NM_138855.1	NM_138855.1		192209	20302005	NM_138855.1	Spdya	NP_620210.1	ILMN_1360873	0002480707	S	1469	AGGCACATGGTCTGTACATGACTCCTCCTGTCACAGAAGAGGCACACTGC	6	-	24016622-24016671	6q13	Rattus norvegicus speedy homolog A (Drosophila) (Spdya), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of CDK activity [goid 45737] [evidence ISS]	Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]	Gs4	Gs4
Rattus norvegicus	RefSeq	GI_62666784-S	ILMN_274832	EGFL6	XM_001066152.1	XM_001066152.1		317470	109511691	XM_001066152.1	Egfl6	XP_001066152.1	ILMN_1361440	0003130484	S	2484	AGATTTGCGCCTATGTGGCTCAGCCTGCTCCTTCACAGTCAAGCTTGCAC				Xq21	PREDICTED: Rattus norvegicus EGF-like-domain, multiple 6 (Egfl6), mRNA.					
Rattus norvegicus	RefSeq	GI_62657130-A	ILMN_292575	GFAP	NM_017009.1	NM_017009.1		24387	8393430	NM_017009.1	Gfap	NP_058705.1	ILMN_1376423	0002120528	S	2487	GTGTACCCTCTCGGAAGCTGGTTGGTGGGCAGGTGAGGAAGAAATGGAGC	10	-	92060056-92060105	10q32.1	Rattus norvegicus glial fibrillary acidic protein (Gfap), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence NAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; Any constituent part of a cell, the basic structural and functional unit of all organisms [goid 44464] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IDA]; Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717838-S	ILMN_51059	LOC503294	XM_578830.1	XM_578830.1		503294	62717838	XM_578830.1	LOC503294	XP_578830.1	ILMN_1365620	0003520022	S	2888	GGCAAAGGACACTGTGGTGACAACAGATGCTGGCGAAGATGTGGAGAAAG					PREDICTED: Rattus norvegicus similar to LRRGT00191 (LOC503294), mRNA.					
Rattus norvegicus	RefSeq	GI_21687015-S	ILMN_300190	CACNG7	NM_080695.1	NM_080695.1		140728	21687015	NM_080695.1	Cacng7	NP_542426.1	ILMN_1360763	0003390112	S	756	CCAGATGACGCAAAATTACCCTCCGGCCATCAAGTACCCGGACCACCTCC	1	-	64114255-64114304	1q12	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 7 (Cacng7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650243	ILMN_50102	RGD1562284_PREDICTED	XM_233812.4	XM_233812.4		313837	109477837	XM_233812.4	RGD1562284_predicted	XP_233812.2	ILMN_1650699	0000840053	S	991	CCTGATAGCTTCTCCTTTCCCTGAAGTCTGGCACACCATGGATGACAATG	6	+	1877688-1877737	6q11	PREDICTED: Rattus norvegicus similar to Glutaminyl-peptide cyclotransferase precursor (QC) (predicted) (RGD1562284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656677-S	ILMN_62878	GAS2L2_PREDICTED	XM_220783.3	XM_220783.3		287570	109488693	XM_220783.3	Gas2l2_predicted	XP_220783.3	ILMN_1353955	0000630338	S	778	GTGATGGTACGTGTTGGGGGTGGCTGGGACACGCTGGGTCATTATCTGGA	10	-	71508995-71509044	10q26	PREDICTED: Rattus norvegicus growth arrest-specific 2 like 2 (predicted) (Gas2l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644384	ILMN_50516	RPL34_PREDICTED	XM_342342.2	XM_342342.2		362041	62644384	XM_342342.2	Rpl34_predicted	XP_342343.2	ILMN_1650183	0005720551	S	150	GACACTGATAGGCCAGTCACATTTGACCTTTGAACTCGCCCGCCCCTTCC				2q43	PREDICTED: Rattus norvegicus ribosomal protein L34 (predicted) (Rpl34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647094-S	ILMN_272796	MRPS33_PREDICTED	XM_001070269.1	XM_001070269.1		296995	109473381	XM_001070269.1	Mrps33_predicted	XP_001070269.1	ILMN_1366806	0005860433	S	449	CCCTCAGTAGACACCAACCCTGTGTCCATGTTCACTTCAGTTGAGCTGTG				4q22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S33 (predicted) (Mrps33_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717872-S	ILMN_53124	LOC501242	XM_576660.1	XM_576660.1		501242	62717872	XM_576660.1	LOC501242	XP_576660.1	ILMN_1352997	0002570717	S	588	GCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAGACAGAGAAATGGATAC					PREDICTED: Rattus norvegicus similar to LRRGT00171 (LOC501242), mRNA.					
Rattus norvegicus	RefSeq	GI_62645891-S	ILMN_273118	LOC688116	XM_001081189.1	XM_001081189.1		688116	109470839	XM_001081189.1	LOC688116	XP_001081189.1	ILMN_1355367	0003170092	S	4809	AGTAGCTTCTAACCAACCGCACAGCGCTCCCACCCAGCCCCACATCCGAG					PREDICTED: Rattus norvegicus similar to sialoadhesin (LOC688116), mRNA.					
Rattus norvegicus	RefSeq	GI_40538873-A	ILMN_277778	NEXN	NM_139231.1	NM_139231.1		246172	40538873	NM_139231.1	Nexn	NP_631977.1	ILMN_1376463	0007100021	A	1492	GGCTCCACTACTGAAGACGAAGAGCAAACCAGATCAGGAGCCCCATGGTT	2	-	250762206-250762255	2q45	Rattus norvegicus nexilin (F actin binding protein) (Nexn), transcript variant b, mRNA.	An adherens junction which connects a cell to the extracellular matrix [goid 5924] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; An adherens junction which connects a cell to the extracellular matrix [goid 5924] [pmid 9832551] [evidence IPI]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51493] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 51493] [evidence ISS]	Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981425-S	ILMN_284896	PSMB9	NM_012708.1	NM_012708.1		24967	6981425	NM_012708.1	Psmb9	NP_036840.1	ILMN_1350444	0002760594	S	729	TGGGCAGAGGTGAAATGGGTATCAGAGAAACGGAGTGCGTGGAGGGAAGC	20	+	4806457-4806506	20p12	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) (Psmb9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Lmp2	Lmp2
Rattus norvegicus	RefSeq	GI_54607158-S	ILMN_295520	KAT5	NM_001005872.1	NM_001005872.1		192218	54607158	NM_001005872.1	Kat5	NP_001005872.1	ILMN_1375009	0000670358	S	1722	TCTAGGCCGACTCCAAGGATAGCTGGCTTGTTGGCTCAGGTCCGCTCTGA	1	-	208233610-208233659	1q43	Rattus norvegicus K(lysine) acetyltransferase 5 (Kat5), mRNA.	A protein complex that possesses histone acetyltransferase activity [goid 123] [evidence TAS]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The modification of histones by addition of acetyl groups [goid 16573] [evidence IMP]; The modification of histones by addition of acetyl groups [goid 16573] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	Tip60; MGC95167; Htatip1	Tip60; MGC95167; Htatip1
Rattus norvegicus	RefSeq	GI_62641190-S	ILMN_266562	RGD1564267_PREDICTED	XM_001078829.1	XM_001078829.1		499254	109462749	XM_001078829.1	RGD1564267_predicted	XP_001078829.1	ILMN_1355752	0005900487	S	2095	CTGCCTGGTCATGTTCTACTTCATTGCGCTGGCTGGAGCACACAAGCGGG				1q35	PREDICTED: Rattus norvegicus similar to Tmc7 protein (predicted) (RGD1564267_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655262-S	ILMN_53145	MOGAT1_PREDICTED	XM_343602.3	XM_343602.3		363261	109486271	XM_343602.3	Mogat1_predicted	XP_343603.3	ILMN_1363694	0000540014	S	671	GGCTTCGGACTGCCCAAGACAAAGTGTATAACCTAACGGGGTTGGCCTTG	9	+	77902694-77902743	9q33	PREDICTED: Rattus norvegicus monoacylglycerol O-acyltransferase 1 (predicted) (Mogat1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665570	ILMN_277250	LOC686477	XR_008948.1	XR_008948.1		686477	109509699	XR_008948.1	LOC686477		ILMN_1650427	0001690411	S	651	GATGAATGCTGGACTGCTGGAGGGGCATAGAGGCGACCGAGAAGAGATCC					PREDICTED: Rattus norvegicus similar to chromosome 6 open reading frame 106 isoform a (LOC686477), mRNA.					
Rattus norvegicus	RefSeq	GI_62654375-S	ILMN_53937	RGD1305208_PREDICTED	XM_236654.4	XM_236654.4		316017	109483999	XM_236654.4	RGD1305208_predicted	XP_236654.4	ILMN_1369397	0006760706	S	2864	GGACCCCATCCACACAGGTGGCCTCCATGACTTCCTGCTTACAGCTTTAG	8	+	115286396-115286445	8q32	PREDICTED: Rattus norvegicus similar to RN49018 (predicted) (RGD1305208_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34862516-S	ILMN_269880	CARD12_PREDICTED	XM_001065561.1	XM_001065561.1		298784	109478993	XM_001065561.1	Card12_predicted	XP_001065561.1	ILMN_1358538	0005900093	S	3563	AGTGCTTCCCAAGCTCTATGTCGAGCTGCACTACTGCCTGAGCTGTGCCG				6q12	PREDICTED: Rattus norvegicus caspase recruitment domain family, member 12 (predicted) (Card12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650351-S	ILMN_269880	CARD12_PREDICTED	XM_001065561.1	XM_001065561.1		298784	109478993	XM_001065561.1	Card12_predicted	XP_001065561.1	ILMN_1354993	0002350735	S	3089	GATGTACCCCAAGCCACCAAATACTCCGGGGACTCTGCCACTTTCAGCGG				6q12	PREDICTED: Rattus norvegicus caspase recruitment domain family, member 12 (predicted) (Card12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717988-S	ILMN_59441	LOC501271	XM_576687.1	XM_576687.1		501271	62717988	XM_576687.1	LOC501271	XP_576687.1	ILMN_1350457	0006400402	S	681	TTAGCGATTCTGTGTGGAAGTCTGTAGCCCTGACAAAGGGTCCATGTGGC				3p13	PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC501271), mRNA.					
Rattus norvegicus	RefSeq	GI_27707157-S	ILMN_59441	LOC501271	XM_576687.1	XM_576687.1		501271	62717988	XM_576687.1	LOC501271	XP_576687.1	ILMN_1359399	0005900184	S	101	TGCTGTCACGAACCGGGGCTCTGCATCCTGAAGAGCTCATTCTTTATGGG				3p13	PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC501271), mRNA.					
Rattus norvegicus	RefSeq	GI_62717914-S	ILMN_262908	LOC501223	XM_576646.1	XM_576646.1		501223	62717793	XM_576646.1	LOC501223	XP_576646.1	ILMN_1368755	0002060138	S	859	TGCACTTTTGGAGGGACCCAGAGAAGTGCGGATGCACATCAATCAAGAGC	Un|NW_047836.1	+	192580-192629		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501223), mRNA.					
Rattus norvegicus	RefSeq	GI_34877991-S	ILMN_262908	LOC501223	XM_576646.1	XM_576646.1		501223	62717793	XM_576646.1	LOC501223	XP_576646.1	ILMN_1375122	0004010021	S	656	AACTCGAACATGACACAGACCAGGACAAGATCTCCCTTGGAGAGAAGTGC	Un|NW_047836.1	+	192377-192426		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501223), mRNA.					
Rattus norvegicus	RefSeq	GI_62717793-S	ILMN_262908	LOC501223	XM_576646.1	XM_576646.1		501223	62717793	XM_576646.1	LOC501223	XP_576646.1	ILMN_1370718	0001690707	S	814	GGATTGAGTAGGCTTTACTTTCACCTCAGCTCTCTCCAGCAAGTGTGCAC	Un|NW_047836.1	+	192535-192584		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501223), mRNA.					
Rattus norvegicus	RefSeq	GI_56799438-S	ILMN_275981	OMG	NM_001005898.2	NM_001005898.2		450224	56799438	NM_001005898.2	Omg	NP_001005898.2	ILMN_1353578	0001690368	S	1311	GCTCAATGCTGTGGTCATGCTGGCAGGCTGAGGGTCTGCAGTTTCTGAAA	10	-	65689092-65689111:65689112-65689141	10q25	Rattus norvegicus oligodendrocyte-myelin glycoprotein (Omg), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105782	MGC105782
Rattus norvegicus	RefSeq	GI_62644249-S	ILMN_66493	AGL_PREDICTED	XM_342331.3	XM_342331.3		362029	109465429	XM_342331.3	Agl_predicted	XP_342332.3	ILMN_1363697	0003360670	S	4599	TGAGAGATCCCCATGGAAAGGACTTCCAGAGCTCACCAATGAGAATGGCC	2	-	212988174-212988218:212989386-212989390	2q41	PREDICTED: Rattus norvegicus amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III) (predicted) (Agl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662706-S	ILMN_264966	EFHA2	XM_001065080.1	XM_001065080.1		364601	109504240	XM_001065080.1	Efha2	XP_001065080.1	ILMN_1353434	0006590102	S	1502	GACAGACTCCACAGAGGGTTCCGGGGTTATAAAACAGTCCAGAAGTATCC				16q12.1	PREDICTED: Rattus norvegicus EF hand domain family, member A2 (Efha2), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651707-S	ILMN_55373	ATCAY_PREDICTED	XM_343154.3	XM_343154.3		362826	109480166	XM_343154.3	Atcay_predicted	XP_343155.3	ILMN_1354985	0006840593	S	1868	GGCCCATGTACCAGAAGTATAAACGGGAGATGGAGCGGGACCGAGTGGAA	7	+	10001428-10001477	7q11	PREDICTED: Rattus norvegicus ataxia, cerebellar, Cayman type (caytaxin) (predicted) (Atcay_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651929-S	ILMN_66699	ONECUT3_PREDICTED	XM_345793.2	XM_345793.2		366829	62651929	XM_345793.2	Onecut3_predicted	XP_345794.2	ILMN_1356964	0004590576	S	1298	GACTCAGCCACCCTGCAAGCGTAAGGAGCAGGATCAGCAGAAAGAGAGGG					PREDICTED: Rattus norvegicus one cut domain, family member 3 (predicted) (Onecut3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647234-S	ILMN_57120	RGD1564384_PREDICTED	XM_575472.2	XM_575472.2		500120	109472033	XM_575472.2	RGD1564384_predicted	XP_575472.1	ILMN_1371631	0004150066	S	3060	GGCAAGAAATGGGGAAGCCAACCCTTGACTGACAGATTAGTCCTTTGTTG	4	+	77614094-77614121:77614122-77614143	4q24	PREDICTED: Rattus norvegicus similar to serine/threonine kinase 31 (predicted) (RGD1564384_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662341-S	ILMN_302926	RGD1559554_PREDICTED	XR_008199.1	XR_008199.1		502062	109503848	XR_008199.1	RGD1559554_predicted		ILMN_1354326	0006760286	S	646	GGGTGCAAAACAGCAAGAAGAGTCACTCTGGAGCCAGAAGCAACTTGTGC				16p14	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1559554_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656364-S	ILMN_62508	RGD1559861_PREDICTED	XM_340832.3	XM_340832.3		360553	109488404	XM_340832.3	RGD1559861_predicted	XP_340833.2	ILMN_1364066	0002850332	S	374	GGCTTTCTGCCTTCGGGTGGAGCCATTTACGTTTCCAGGGGACAACACGG	10	-	57358489-57358538	10q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559861_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653134-S	ILMN_59027	LOC366996	XM_345881.2	XM_345881.2		366996	62653134	XM_345881.2	LOC366996	XP_345882.1	ILMN_1352718	0005130338	S	1754	AACAGGATTGAGGTAGAAGGGGTATGGGAAGATGGGGTTGGACACCTCCC				7q36	PREDICTED: Rattus norvegicus similar to Homeobox protein Hox-C11 (predicted) (LOC366996), mRNA.					
Rattus norvegicus	RefSeq	GI_62642261-S	ILMN_280830	BLNK	NM_001025767.1	NM_001025767.1		499356	71043855	NM_001025767.1	Blnk	NP_001020938.1	ILMN_1354453	0001660735	S	1555	CTGTGAGTCATCAGCGATGAGGGAGAGAAGATGAATGAAGCCCCTGAGAC	1	-	246091470-246091519	1q54	Rattus norvegicus B-cell linker (Blnk), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC112831	MGC112831
Rattus norvegicus	RefSeq	GI_62660005-S	ILMN_62610	LOC364084	XM_344196.2	XM_344196.2		364084	62660005	XM_344196.2	LOC364084	XP_344197.2	ILMN_1375158	0003190026	S	630	AAGCTGCGTGGCACTGTGACAACGGTCCCCAGTCCAGCTGAGAAGTGCTT					PREDICTED: Rattus norvegicus similar to Mg87 protein (LOC364084), mRNA.			Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with molybdenum (Mo) ions [goid 30151] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.8272	ILMN_161613	RN.8272	Rn.8272		Rn.8272		49494526	CO386935			ILMN_1530320	0002650735	S	318	CTTGTGTTGTACCTTTAGTCTTGCTATTTTTGTTTTCTTTGGTGATTTAT					AGENCOURT_26625247 NIH_MGC_253 Rattus norvegicus cDNA clone IMAGE:7304244 5', mRNA					
Rattus norvegicus	RefSeq	GI_47577286-S	ILMN_293126	OLR722	NM_001000572.1	NM_001000572.1		366114	47577286	NM_001000572.1	Olr722	NP_001000572.1	ILMN_1363475	0004760181	S	639	GGTCTCCTATGTTGCCATCCTGCGCTCCCTAAAGAACCACAGTGCAGAGG	3	+	74300408-74300457	3q24	Rattus norvegicus olfactory receptor 722 (Olr722), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr722	Olr722
Rattus norvegicus	RefSeq	GI_62647253-S	ILMN_58026	LOC502764	XM_578262.1	XM_578262.1		502764	62647253	XM_578262.1	LOC502764	XP_578262.1	ILMN_1374570	0004280044	S	3491	AAGGCTTGGCCTCAGGGATTTGCAGGAGAAGAGGGCTGTGCAGCTCCTGA				4q24	PREDICTED: Rattus norvegicus similar to KIAA1285 protein (LOC502764), mRNA.					
Rattus norvegicus	RefSeq	GI_58865403-A	ILMN_265667	CAB39L	NM_001011917.1	NM_001011917.1		290291	58865403	NM_001011917.1	Cab39l	NP_001011917.1	ILMN_1376640	0005570162	S	1229	GAGACTTGAAGAAAGCGGCCCCATGAAGACGGTCCTGCCCTGACAGCCAT	15	+	38640419-38640444:38640445-38640468	15p12	Rattus norvegicus calcium binding protein 39-like (Cab39l), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656169-S	ILMN_52216	ATPAF2_PREDICTED	XM_220522.4	XM_220522.4		303190	109488166	XM_220522.4	Atpaf2_predicted	XP_220522.3	ILMN_1358633	0000450594	S	1278	GCTTCCGATGCAGATGCCCTTGGCTTGACCAGTAGTGAGGAAGGGAGACG	10	-	46669084-46669133	10q22	PREDICTED: Rattus norvegicus ATP synthase mitochondrial F1 complex assembly factor 2 (predicted) (Atpaf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873620-S	ILMN_67972	LECT2_PREDICTED	XM_341486.2	XM_341486.2		361205	109504638	XM_341486.2	Lect2_predicted	XP_341487.2	ILMN_1353461	0003990372	S	512	CCCCGGCATACCTGTAAGCAGAGACAGAGGCCAGATCTTCTCAAATTCCC	17	+	14001024-14001073	17p14	PREDICTED: Rattus norvegicus leukocyte cell-derived chemotaxin 2 (predicted) (Lect2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642439-S	ILMN_64433	PDCD11_PREDICTED	XM_219966.4	XM_219966.4		309458	109460190	XM_219966.4	Pdcd11_predicted	XP_219966.4	ILMN_1366714	0005550026	S	5803	ACCTGGACACTGGGAGCCGTTGCCGGGGACTGTTGGAATCGCTGCTTTTT	1	+	252453635-252453684	1q54	PREDICTED: Rattus norvegicus programmed cell death protein 11 (predicted) (Pdcd11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661239	ILMN_69097	RGD1306755_PREDICTED	XM_341301.3	XM_341301.3		361025	109501508	XM_341301.3	RGD1306755_predicted	XP_341302.3	ILMN_1650137	0006400270	S	2482	AGCGGGACTTGAAAACCCCATCACAGTCTTATCCGCCCAGGAGTGGAGCC	15	-	21025330-21025357:21028153-21028174	15p14	PREDICTED: Rattus norvegicus similar to 5730420B22Rik protein (predicted) (RGD1306755_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644187-S	ILMN_290832	RGD1310209_PREDICTED	XM_001070823.1	XM_001070823.1		362019	109467418	XM_001070823.1	RGD1310209_predicted	XP_001070823.1	ILMN_1355574	0006400128	S	2716	AAGTTGTGTTCTGGGGGCATTTCCCTGCCTGAGCAGAGAGTCACCATCTG				2q34	PREDICTED: Rattus norvegicus similar to KIAA1324 protein (predicted) (RGD1310209_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642948-S	ILMN_69319	PAIP1_PREDICTED	XM_345160.3	XM_345160.3		365684	109464359	XM_345160.3	Paip1_predicted	XP_345161.3	ILMN_1368020	0000540020	S	740	GCCGGACGGAGTATGAGGCAAAAGACCAAGCTGCCAAAGGGGATGAAGTG	2	+	51625531-51625580	2q16	PREDICTED: Rattus norvegicus polyadenylate binding protein-interacting protein 1 (predicted) (Paip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978440-S	ILMN_297302	ACTG2	NM_012893.1	NM_012893.1		25365	6978440	NM_012893.1	Actg2	NP_037025.1	ILMN_1367932	0006650014	S	1144	TAAAGTCACAGGGCCTTCTCTGGGGATCCCTGCAAGACTGCTGTCACCAG	4	-	117732510-117732557:117732558-117732559	4q34	Rattus norvegicus actin, gamma 2, smooth muscle, enteric (Actg2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	SMGA; MGC105507; ACTGE	SMGA; MGC105507; ACTGE
Rattus norvegicus	RefSeq	GI_31377476	ILMN_48040	RDH3	NM_133543.2	NM_133543.2		171065	31377476	NM_133543.2	Rdh3	NP_598227.2	ILMN_1650401	0005290014	S	1625	TGGGAGGGCCACCACCAGCACCTCCGTACCCTAATCTGGATTCACAGGCT					Rattus norvegicus retinol dehydrogenase type III (Rdh3), mRNA.				RoDH(III)	RoDH(III)
Rattus norvegicus	RefSeq	GI_62718024-S	ILMN_269434	LOC301114	XM_001059741.1	XM_001059741.1		301114	109486594	XM_001059741.1	LOC301114	XP_001059741.1	ILMN_1360081	0001450292	S	643	CGCTTGTACTGACCTGGCTGTTTATGAGCTACTCCGGTGCTTGTGGCAGA					PREDICTED: Rattus norvegicus similar to solute carrier family 25 member 25 (LOC301114), mRNA.					
Rattus norvegicus	RefSeq	GI_62641645-S	ILMN_264229	RGD1563319_PREDICTED	XM_001063662.1	XM_001063662.1		293632	109463213	XM_001063662.1	RGD1563319_predicted	XP_001063662.1	ILMN_1357125	0004200152	S	970	TCCTGGACCCCTCAGACCTGATACCCAGCAAGAAGGGCTTACATGGGAGC				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330512M04 gene (predicted) (RGD1563319_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981117-S	ILMN_272043	KCNA5	NM_012972.1	NM_012972.1		25470	6981117	NM_012972.1	Kcna5	NP_037104.1	ILMN_1371536	0000510020	S	1640	GCAGCAAGGCCTCCTTTTGCAAGACTGGGGGTTCCCTGGAGAGTTCTGAC	4	-	162896402-162896451	4q42	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 5 (Kcna5), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IMP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IMP]; Any process that decreases the concentration of calcium ions in the cytodol [goid 51481] [evidence IMP]; The regulation of the levels, transport, and metabolism of potassium ions [goid 55075] [evidence IMP]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA];  [goid 15271] [evidence IMP];  [goid 19870] [evidence IEA];  [goid 19870] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv1; Kv1.5	Kv1; Kv1.5
Rattus norvegicus	RefSeq	GI_62653844-S	ILMN_295819	USP3	NM_001025424.1	NM_001025424.1		363084	70794796	NM_001025424.1	Usp3	NP_001020595.1	ILMN_1363053	0005900484	S	117	TGTCCGCACCTCAGCTCTAGCGTCTGCATCGCCCCGGACTCAGCCAAGTT	8	-	70896951-70897000	8q24	Rattus norvegicus ubiquitin specific peptidase 3 (Usp3), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653840-S	ILMN_295819	USP3	NM_001025424.1	NM_001025424.1		363084	70794796	NM_001025424.1	Usp3	NP_001020595.1	ILMN_1357920	0003850113	S	2021	TGCATAGCAGGCAGGTCAGCGACTCCGTTGTGAGGGTCGTGTGTGCAGGT				8q24	Rattus norvegicus ubiquitin specific peptidase 3 (Usp3), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865695-A	ILMN_283075	ADCK4	XM_001077748.1	XM_001077748.1		308453	109461519	XM_001077748.1	Adck4	XP_001077748.1	ILMN_1376621	0005050577	S	2090	GGGTTCCAGCCTGTGTATTGGAGGATGGGGGTGGGTGCTGATCCTTCCCT				1q21	PREDICTED: Rattus norvegicus aarF domain containing kinase 4 (Adck4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656131-S	ILMN_49948	RNF187_PREDICTED	XM_340805.3	XM_340805.3		360533	109488182	XM_340805.3	Rnf187_predicted	XP_340806.3	ILMN_1368629	0006860139	S	1996	CTAGTCCAAGAGACAAAACCCAGCAGAGTGGACAGACACAGGCCAGGGCC	10	-	45221921-45221970	10q22	PREDICTED: Rattus norvegicus ring finger protein 187 (predicted) (Rnf187_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_59676549-S	ILMN_51488	DOC2A	NM_022937.2	NM_022937.2		65031	59676549	NM_022937.2	Doc2a	NP_075226.1	ILMN_1374711	0000070563	S	751	CGCTGAGGGGCATATCCTGTTACCTGAAGGAGCTAGAGCAGGCAGAGCAG	1	+	186030425-186030456:186030539-186030556	1q36	Rattus norvegicus double C2-like domains, alpha (Doc2a), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence IEP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576480-S	ILMN_269425	OLR1608	NM_001000093.1	NM_001000093.1		290006	47576480	NM_001000093.1	Olr1608	NP_001000093.1	ILMN_1352429	0001090338	S	286	GGATGCATTGCCCAGATATTCTTTCTCCACCTGTTCACTGGGACTGAGAT	15	-	25928399-25928448	15p14	Rattus norvegicus olfactory receptor 1608 (Olr1608), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1608; ratchr15-25944434-25943481_ORF	Olr1608; ratchr15-25944434-25943481_ORF
Rattus norvegicus	RefSeq	GI_62647251-S	ILMN_57932	LOC502763	XM_578261.1	XM_578261.1		502763	62647251	XM_578261.1	LOC502763	XP_578261.1	ILMN_1351317	0006980647	S	823	CAGCTGGCCTTGCCCAGGAGGAACCAAATCCAAGGCAGACACCTGAGCAG					PREDICTED: Rattus norvegicus similar to hypothetical protein LOC155060 (LOC502763), mRNA.					
Rattus norvegicus	RefSeq	GI_62662653-S	ILMN_50472	STOX2	XM_224852.4	XM_224852.4		306459	109503342	XM_224852.4	Stox2	XP_224852.4	ILMN_1374371	0004670082	S	4466	TCTGAAAATGCCACAGAGATGTGTTGCTCCCTGCCGGCCTACGGGGTACG	16	+	48304404-48304453	16q11	PREDICTED: Rattus norvegicus storkhead box 2 (Stox2), mRNA.					
Rattus norvegicus	RefSeq	GI_52138740-S	ILMN_294286	SMGC	NM_001004449.1	NM_001004449.1		446171	52138740	NM_001004449.1	Smgc	NP_001004449.1	ILMN_1370996	0002030021	S	2350	GCTGGGCGATTTTTGCAGATATGTTTTGGAGAGGCATAGCCATGTTCATC	7	+	130328376-130328425	7q35	Rattus norvegicus submandibular gland protein C (Smgc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]				
Rattus norvegicus	RefSeq	GI_27663671	ILMN_282777	FBXL12	NM_001025700.1	NM_001025700.1		313782	71043625	NM_001025700.1	Fbxl12	NP_001020871.1	ILMN_1650192	0005860112	S	948	TGTCAGCAGACAGCACCTTGCTGGCCATCAGCCGCCACCTCCGAGATGTG	8	-	19657841-19657890	8q13	Rattus norvegicus F-box and leucine-rich repeat protein 12 (Fbxl12), mRNA.				MGC112648	MGC112648
Rattus norvegicus	RefSeq	GI_62641491-A	ILMN_273944	NAALADL1	NM_031759.1	NM_031759.1		83568	13929069	NM_031759.1	Naaladl1	NP_113947.1	ILMN_1376880	0002510059	S	2403	GTCCCTGGAGTTAAGGACACCTGCTCATGGTAGTGGGTGAAATCTGGGGC				1q43	Rattus norvegicus N-acetylated alpha-linked acidic dipeptidase-like 1 (Naaladl1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Naaladasel	Naaladasel
Rattus norvegicus	RefSeq	GI_62645138-A	ILMN_298586	MARCH7	NM_001012087.1	NM_001012087.1		311059	58865743	NM_001012087.1	March7	NP_001012087.1	ILMN_1376312	0005550519	S	2178	CGAACCAAGCACGCGCGTCCGATTTATTAACCTTGCAAGAACTCTTCAGG	3	+	41950386-41950407:41951887-41951914	3q21	Rattus norvegicus membrane-associated ring finger (C3HC4) 7 (March7), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Axot	Axot
Rattus norvegicus	RefSeq	GI_62659156-S	ILMN_267884	RGD1562868_PREDICTED	XM_573426.1	XM_573426.1		498209	62659156	XM_573426.1	RGD1562868_predicted	XP_573426.1	ILMN_1353937	0004920504	S	1169	GGCAGAATGTCTTCTCCTTAAGTGTGGTGGCTGTGCCTTGTGTCCAGAAA	13	-	13306348-13306377:13306378-13306397	13p13	PREDICTED: Rattus norvegicus similar to squamous cell carcinoma antigen 2 (predicted) (RGD1562868_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647541-S	ILMN_48705	LOC502807	XM_578306.1	XM_578306.1		502807	62647541	XM_578306.1	LOC502807	XP_578306.1	ILMN_1363334	0004230020	S	95	GTCTCTAGAGCAGAGAGCCACCATCTCTTGCAAAACCAGCCAGAATGTCG				4q31	PREDICTED: Rattus norvegicus similar to Ig variable region, light chain (LOC502807), mRNA.					
Rattus norvegicus	RefSeq	GI_62667132-S	ILMN_68333	LOC501605	XM_577005.1	XM_577005.1		501605	62667132	XM_577005.1	LOC501605	XP_577005.1	ILMN_1364624	0002350129	S	458	TGGCAAGTCCCACACTGTGCCCAAGAAGCTACTGATGTTGGCTGGTATAG					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC501605), mRNA.					
Rattus norvegicus	RefSeq	GI_62645670-A	ILMN_293576	ELL3	NM_001011957.1	NM_001011957.1		296102	58865483	NM_001011957.1	Ell3	NP_001011957.1	ILMN_1376245	0006290433	S	1276	GAGCCCATCTGTGTTTCTTATATCCGCGGTGGCAGGAGAGCCATGCTAGG	3	-	108241467-108241516	3q35	Rattus norvegicus elongation factor RNA polymerase II-like 3 (Ell3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence IEA]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of global transcription from an RNA polymerase II promoter [goid 45817] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of global transcription from an RNA polymerase II promoter [goid 45817] [evidence ISS]	Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Any activity that increases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 8159] [evidence IEA]; Any activity that increases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 8159] [evidence ISS]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_21717800-S	ILMN_267566	SERPINA12	NM_138825.1	NM_138825.1		191570	21717800	NM_138825.1	Serpina12	NP_620180.1	ILMN_1352958	0005420022	S	1323	TCGGGAGCCCAGACACTGCCCATGGAGACCCCACGAAGGATGAAGCTAAA	6	-	128086182-128086231	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 (Serpina12), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEP]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Ol-64; Ol64	Ol-64; Ol64
Rattus norvegicus	RefSeq	GI_13929195-S	ILMN_281526	AGXT2	NM_031835.1	NM_031835.1		83784	13929195	NM_031835.1	Agxt2	NP_114023.1	ILMN_1362683	0002650671	S	1849	GTCGCCGATGAGTCCTGAAGTAAATCCTTTCCGTGACACTACCTCTGGGC	2	+	59754838-59754887	2q16	Rattus norvegicus alanine-glyoxylate aminotransferase 2 (Agxt2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the reaction: pyruvate + (R)-3-amino-2-methylpropanoate = L-alanine + methylmalonate-semialdehyde [goid 47305] [evidence IEA]	AGT2	AGT2
Rattus norvegicus	RefSeq	GI_21955129-S	ILMN_293372	ACOX2	NM_145770.1	NM_145770.1		252898	21955129	NM_145770.1	Acox2	NP_665713.1	ILMN_1370783	0005670019	S	2139	CGCCTGTTTGAGTGGGCTCAGAAGTACCCAGCCAATACTCAGGAGAACCC	15	+	18673116-18673158:18677533-18677539	15p14	Rattus norvegicus acyl-Coenzyme A oxidase 2, branched chain (Acox2), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEP]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IDA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IEA]; Catalysis of the reaction: acyl-CoA + O2 = trans-2,3-dehydroacyl-CoA + H2O2 [goid 3997] [evidence IEA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA + H2O + acceptor = (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oyl-CoA + reduced acceptor [goid 33791] [evidence IDA]; Catalysis of the reaction: (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA + H2O + acceptor = (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oyl-CoA + reduced acceptor [goid 33791] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659779-S	ILMN_288971	GREM2_PREDICTED	XM_001058662.1	XM_001058662.1		289264	109499102	XM_001058662.1	Grem2_predicted	XP_001058662.1	ILMN_1358228	0006660164	S	707	CCAGAAGGTGAAGCATTGCCGGTGCATGTCGGTGAACCTCAGTGACTCTG				13q24	PREDICTED: Rattus norvegicus gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis) (predicted) (Grem2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656374-S	ILMN_302832	RPAIN	NM_001033060.1	NM_001033060.1		287463	74271891	NM_001033060.1	Rpain	NP_001028232.1	ILMN_1362835	0000630465	S	374	GCATGTTGGCGGAGTGGGAAGCAAACCCCCTCATCTGTCCTGTGTGTATA	10	+	57878248-57878297	10q24	Rattus norvegicus RPA interacting protein (Rpain), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence IEA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands [goid 6261] [evidence IEA]; The process whereby new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands [goid 6261] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence ISS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]	Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.4237	ILMN_161240	RN.4237	Rn.4237		Rn.4237		50385489	CO572860			ILMN_1530339	0006350332	S	348	AACATGAAAGAGAGATATTAATATACTCATGAAGAACTCCATGCAAAGGT					AGENCOURT_28625182 NIH_MGC_250 Rattus norvegicus cDNA clone IMAGE:7380040 5', mRNA					
Rattus norvegicus	RefSeq	GI_62665412-S	ILMN_70326	SPIRE2_PREDICTED	XM_226553.3	XM_226553.3		307925	62665412	XM_226553.3	Spire2_predicted	XP_226553.3	ILMN_1370249	0000780577	S	1770	TCCTGGAGGCCCAGCACCCGAGACCAGGGTAAATACTGCCTTTTCCAGCA				19q12	PREDICTED: Rattus norvegicus spire homolog 2 (Drosophila) (predicted) (Spire2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664227-S	ILMN_51103	LOC291665	XM_238028.2	XM_238028.2		291665	62664227	XM_238028.2	LOC291665	XP_238028.1	ILMN_1369157	0002100048	S	654	TGGAACGGGAAAGGAAGACGAACACGGATGCTGGGTGTCAGGCAGTCCTG					PREDICTED: Rattus norvegicus hypothetical LOC291665 (LOC291665), mRNA.					
Rattus norvegicus	RefSeq	GI_62644677-S	ILMN_66311	LOC301497	XM_217430.3	XM_217430.3		301497	62644677	XM_217430.3	LOC301497	XP_217430.3	ILMN_1368408	0002360152	S	66	CATGCAAGTCCTAGTCGTGTCCGAATTGGACAAGGGCTCTGTGCCCCACA					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC301497), mRNA.					
Rattus norvegicus	RefSeq	GI_62718287-S	ILMN_52283	LOC363423	XM_343746.2	XM_343746.2		363423	62718287	XM_343746.2	LOC363423	XP_343747.2	ILMN_1371226	0002810053	S	700	CCAACATCCTGAATGACAACACCATTTGAGAGACAAATGAGGGGACTGCC					PREDICTED: Rattus norvegicus hypothetical LOC363423 (LOC363423), mRNA.					
Rattus norvegicus	RefSeq	GI_62643053-S	ILMN_51908	LOC499545	XM_579979.1	XM_579979.1		499545	62643053	XM_579979.1	LOC499545	XP_579979.1	ILMN_1363368	0004230450	S	736	CTGCCTTCTCTGTGGCCTTCGGATGGAGCAATGGGGAAGTTCTGGAGAGT					PREDICTED: Rattus norvegicus LOC499545 (LOC499545), mRNA.					
Rattus norvegicus	RefSeq	GI_56550074-A	ILMN_271908	PSMA7	NM_001008217.1	NM_001008217.1		29674	56550074	NM_001008217.1	Psma7	NP_001008218.1	ILMN_1376320	0005900736	S	663	GTCAGGTGGCAAAAACATTGAACTTGCTGTCATGAGGCGGGATCAGCCCC	3	-	169101386-169101435	3q43	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 7 (Psma7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647426-S	ILMN_66318	LOC500181	XM_575533.1	XM_575533.1		500181	62647426	XM_575533.1	LOC500181	XP_575533.1	ILMN_1363555	0006220446	S	5	ACACAGACATGGCTATTCCCACTCAGCTCTTGGGGTTGTTGTTACTGTGG				4q31	PREDICTED: Rattus norvegicus similar to IG light chain Vk region Y13-259 (LOC500181), mRNA.					
Rattus norvegicus	RefSeq	GI_27683242-S	ILMN_161758	LOC309361	XM_219857.1	XM_219857.1			27683242	XM_219857.1	LOC309361		ILMN_2039288	0006400747	S	2005	AGCTGTGCTTCAGGGGAAAGGCGTAAGGTGTGCGTGGTCCGAGGCTCTTT										
Rattus norvegicus	RefSeq	GI_62642986-S	ILMN_48776	LOC502507	XM_577988.1	XM_577988.1		502507	62642986	XM_577988.1	LOC502507	XP_577988.1	ILMN_1372061	0005220722	S	227	CTCTGACAGCACAGAAACTCACGTGGAAAGAGCTGTGATCAACTCGGCTG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502507), mRNA.					
Rattus norvegicus	RefSeq	GI_62662309-S	ILMN_61730	LOC502051	XM_577484.1	XM_577484.1		502051	62662309	XM_577484.1	LOC502051	XP_577484.1	ILMN_1373178	0006020167	S	656	CCACAGATTGCATGGGTGTACAACAGCAGGAAAAGAGCCACTCTGGAGCC				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502051), mRNA.					
Rattus norvegicus	RefSeq	GI_62651533-S	ILMN_68638	LOC503086	XM_578606.1	XM_578606.1		503086	62651533	XM_578606.1	LOC503086	XP_578606.1	ILMN_1352735	0005570427	S	67	TGAGTTGGGTGAGGCAGAAGTCTCGGCATGAACTTGAATGGATTGGAGAC				6q33	PREDICTED: Rattus norvegicus similar to rearranged immunoglobulin Vh15A (LOC503086), mRNA.					
Rattus norvegicus	RefSeq	GI_62665824-S	ILMN_268066	ITGB2	XM_001069791.1	XM_001069791.1		309684	109509268	XM_001069791.1	Itgb2	XP_001069791.1	ILMN_1366766	0003390750	S	2783	GTTTTCGTGCATAAAGGGAAGACAGGGGTCTCAGTAAAGGTGGCCCCAGC	20	-	11446848-11446897	20p12	PREDICTED: Rattus norvegicus integrin beta 2 (Itgb2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The movement of leukocytes within or between different tissues and organs of the body during an inflammatory response [goid 2523] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IMP]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IMP]; The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor [goid 30101] [evidence IMP]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 43542] [evidence IMP]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence IMP]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence IEA]; The migration of leukocytes from the blood vessels into the surrounding tissue [goid 45123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence IMP]; Any process that activates or increases angiogenesis [goid 45766] [evidence IMP]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence IEA]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_34864923-S	ILMN_262927	LOC365499	XM_001053352.1	XM_001053352.1		365499	109460817	XM_001053352.1	LOC365499	XP_001053352.1	ILMN_1351307	0001570563	S	713	CAGGATATGGTTGCACAGCCCAGGCACATCAAGTGAGTCCCGTTACAGCC					PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 1 (LOC365499), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653967-S	ILMN_56500	RGD1308677_PREDICTED	XM_236254.4	XM_236254.4		300723	109483509	XM_236254.4	RGD1308677_predicted	XP_236254.4	ILMN_1357939	0005080671	S	897	CCTGACCGCTGTGGAGAGGGATGCTTTGTTCTTACTGGTGTGTGCGCGTT	8	+	58504544-58504593	8q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C630028N24 gene (predicted) (RGD1308677_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40445396-S	ILMN_299172	MGC72973	NM_198776.1	NM_198776.1		361619	40445396	NM_198776.1	MGC72973	NP_942071.1	ILMN_1361935	0004610273	S	103	GGGGAAAGGTGAACCCTGTTGAAATTGGCGCTGAGTCCCTTGCCAGTCTG	1	-	161597856-161597864:161597984-161598024	1q32	Rattus norvegicus beta-glo (MGC72973), mRNA.	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640711-S	ILMN_50683	LOC499178	XM_579926.1	XM_579926.1		499178	62640711	XM_579926.1	LOC499178	XP_579926.1	ILMN_1357213	0000130168	S	767	CGGCCGCGCTTCGACCCGGTATCTTAGAAGATGGTAATGTGGTTGCCGAT					PREDICTED: Rattus norvegicus LOC499178 (LOC499178), mRNA.					
Rattus norvegicus	RefSeq	GI_62641576-S	ILMN_296180	RGD1311186_PREDICTED	XM_001057068.1	XM_001057068.1		293587	109463108	XM_001057068.1	RGD1311186_predicted	XP_001057068.1	ILMN_1351753	0003450079	S	431	CAAGAAGGGAACTCTTGACCTCGGACCCTCATAGAGACCACTGCGGGCTG				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810014F10 gene (predicted) (RGD1311186_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078484-S	ILMN_285761	RGD1311827	XM_001068788.1	XM_001068788.1		289753	109500896	XM_001068788.1	RGD1311827	XP_001068788.1	ILMN_1364189	0007050670	S	1843	CAGTGTCCCTGCTGGTGGAAGGGCTAGTGGATACCGAGGCCCTAGTGACT				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730411O18 gene, transcript variant 1 (RGD1311827), mRNA.					
Rattus norvegicus	RefSeq	GI_62717787-S	ILMN_55787	RGD1564665_PREDICTED	XM_573610.2	XM_573610.2		498375	109512853	XM_573610.2	RGD1564665_predicted	XP_573610.2	ILMN_1366043	0006650369	S	728	AACTAGAACATGACACAGACCAGGACCGCATCTCCCTTGGAGAGAAGAGC	Un|NW_047836.1	+	18621-18670		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (predicted) (RGD1564665_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650873-S	ILMN_58757	LOC503030	XM_578550.1	XM_578550.1		503030	62650873	XM_578550.1	LOC503030	XP_578550.1	ILMN_1366740	0002100056	S	420	GACATATTTATGAGGCACTCTCTCAGCATCCCTGTGAGGCACTCAGCCGC					PREDICTED: Rattus norvegicus LOC503030 (LOC503030), mRNA.					
Rattus norvegicus	RefSeq	GI_62646358-S	ILMN_275517	ZSWIM3_PREDICTED	XM_001070698.1	XM_001070698.1		311630	109471315	XM_001070698.1	Zswim3_predicted	XP_001070698.1	ILMN_1356611	0003360056	S	2577	TTCAGAGACAGAGGGGAGGAGGGTAGCCCTGGATTGTCGACTGTTGCTGC				3q42	PREDICTED: Rattus norvegicus zinc finger, SWIM domain containing 3 (predicted) (Zswim3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_70608123	ILMN_280659	TIPIN	NM_001025287.1	NM_001025287.1		363076	70608123	NM_001025287.1	Tipin	NP_001020458.1	ILMN_1530503	0002940487	S	24	AAAAAATGTTGGAGCAAGAAGAAAATGGCTTGTTTGAAATACCAGATTAT	9	-	112833056-112833105	9q38	Rattus norvegicus timeless interacting protein (Tipin), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A signal transduction based surveillance mechanism that prevents the initiation of mitosis until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome [goid 76] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The slowing of DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progession [goid 31573] [evidence ISS]; The slowing of DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progession [goid 31573] [evidence ISS]; A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle [goid 33261] [evidence ISS]; Any process that prevents the collapse of stalled replication forks [goid 48478] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tipin; MGC114381	Tipin; MGC114381
Rattus norvegicus	RefSeq	GI_11559987-S	ILMN_273115	MAX	NM_022210.1	NM_022210.1		60661	11559987	NM_022210.1	Max	NP_071546.1	ILMN_1349037	0000940072	S	17	ACATCGAGGTGGAGAGCGACGAAGAGCAACCGAGGTTTCAATCTGCGGCT	6	-	99545392-99545395:99553113-99553139:99553816-99553834	6q24	Rattus norvegicus MYC associated factor X (Max), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IMP]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11891322] [evidence IPI]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62339348-S	ILMN_286447	IFNA1	NM_001014786.1	NM_001014786.1		298210	62339348	NM_001014786.1	Ifna1	NP_001014786.1	ILMN_1368876	0000610537	S	170	AGTACTTTGGGTTCCCTTTGGAGAAGGTGGATGGCCAGCAGATCCAGAAG	5	-	108012098-108012147	5q32	Rattus norvegicus interferon-alpha 1 (Ifna1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]	 [goid 5126] [evidence IEA]	IFN-alpha1	IFN-alpha1
Rattus norvegicus	RefSeq	GI_62651416-S	ILMN_282815	RGD1562420_PREDICTED	XM_001061918.1	XM_001061918.1		314532	109480081	XM_001061918.1	RGD1562420_predicted	XP_001061918.1	ILMN_1350747	0004050402	S	467	GCTTGATCATCCGGAAGCATGTGCCTGTCCATTGCCGATGCCGGAAGAAC				6q33	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1562420_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644966	ILMN_57925	LOC362118	XM_342420.2	XM_342420.2		362118	62644966	XM_342420.2	LOC362118	XP_342421.2	ILMN_1650591	0000670204	S	1445	GAACCACTTTTGGCAGCTACGAGTACAGTTTCCGCACCGAGCAGAGCGCG				3p11	PREDICTED: Rattus norvegicus similar to FLJ00022 protein (predicted) (LOC362118), mRNA.					
Rattus norvegicus	RefSeq	GI_29789300-S	ILMN_269711	SLC26A3	NM_053755.1	NM_053755.1		114629	29789300	NM_053755.1	Slc26a3	NP_446207.1	ILMN_1366727	0006290435	S	2002	CCAGATAGAAGAACTGGATCAGCCGATCAATACCACGGACCTGCCCTTTG	6	+	49338275-49338324	6q16	Rattus norvegicus solute carrier family 26, member 3 (Slc26a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence TAS]; The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 8271] [evidence IEA];  [goid 15380] [evidence IDA];  [goid 15380] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645689-S	ILMN_262958	RGD1560628_PREDICTED	XM_001080999.1	XM_001080999.1		499879	109470731	XM_001080999.1	RGD1560628_predicted	XP_001080999.1	ILMN_1356360	0001770452	S	801	GGTGATTCTCCACTACACTCGACCCAGCGTCCTTCGAGCCTTACTGGATC				3q35	PREDICTED: Rattus norvegicus similar to Numb-interacting protein (predicted) (RGD1560628_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656594-S	ILMN_57861	SARM1_PREDICTED	XM_213404.4	XM_213404.4		287545	109488589	XM_213404.4	Sarm1_predicted	XP_213404.2	ILMN_1356359	0000360408	S	3878	GCTGCCCAGGCTACTTGCCCTCGGTCTACATTATCAGAGAGCCAAAAGGC	10	-	64584287-64584336	10q25	PREDICTED: Rattus norvegicus sterile alpha and TIR motif containing 1 (predicted) (Sarm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642565-S	ILMN_47905	NANOS1_PREDICTED	XM_345053.3	XM_345053.3		365494	109460314	XM_345053.3	Nanos1_predicted	XP_345054.2	ILMN_1373955	0002030082	S	835	TTCTGCCGGAACAACAAGGAGGCGGTGGCGCTCTACACCACACACATCCT	1	+	267365227-267365276	1q55	PREDICTED: Rattus norvegicus nanos homolog 1 (Drosophila) (predicted) (Nanos1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758533-S	ILMN_282349	EMB	NM_053719.1	NM_053719.1		114511	16758533	NM_053719.1	Emb	NP_446171.1	ILMN_1359464	0006980022	S	1329	TTACCCTCTCTGGGAGATCAGGGGGACAGGGCAGACACCAGCAAAATCAG	2	+	49155096-49155145	2q15	Rattus norvegicus embigin (Emb), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]			
Rattus norvegicus	RefSeq	GI_62654659-S	ILMN_267860	FOXP4_PREDICTED	XM_343526.2	XM_343526.2		363185	62654659	XM_343526.2	Foxp4_predicted	XP_343527.2	ILMN_1360326	0004070592	S	3685	TCAGATGCCTCCATAGGACCAAGTCCCCATCATGCCGGGAGTGTGGATTC	9	+	8579246-8579295	9q12	PREDICTED: Rattus norvegicus forkhead box P4 (predicted) (Foxp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576398-S	ILMN_281211	OLR8	NM_001000113.1	NM_001000113.1		292563	47576398	NM_001000113.1	Olr8	NP_001000113.1	ILMN_1370713	0005550377	S	675	TGGTAGGACAGTTCTAGGCATGCCATCAGCTGCTGCCCGCCACAAAGCCT	1	-	65806108-65806157	1q12	Rattus norvegicus olfactory receptor 8 (Olr8), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr8	Olr8
Rattus norvegicus	RefSeq	GI_62648413-S	ILMN_274737	LOC683999	XM_001068421.1	XM_001068421.1		683999	109474331	XM_001068421.1	LOC683999	XP_001068421.1	ILMN_1364987	0006110440	S	343	AGTGTCCTGGACTCCCTCAACAGACAACAGAACACATGCCTGCGGTTAAC					PREDICTED: Rattus norvegicus similar to killer cell lectin-like receptor, subfamily A, member 17 (LOC683999), mRNA.					
Rattus norvegicus	RefSeq	GI_62650926-S	ILMN_279613	MPHOSPH6_PREDICTED	XM_001080959.1	XM_001080959.1		299173	109479572	XM_001080959.1	Mphosph6_predicted	XP_001080959.1	ILMN_1370937	0000940451	S	296	CAGCAGAAGAGGAGACCGTAGAGGCTGATGTGTCGGAGAAAGAAATGGCA				6q24	PREDICTED: Rattus norvegicus M phase phosphoprotein 6 (predicted) (Mphosph6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665161-I	ILMN_57710	ATP6V0D1_PREDICTED	XM_574227.1	XM_574227.1		291969	62665161	XM_574227.1	Atp6v0d1_predicted	XP_574227.1	ILMN_1375819	0002850088	S	127	GGGCCCGGAAGCTGGATACATTTAAGAGCCAGCCCCATTGTGGTCACGTG				19q11	PREDICTED: Rattus norvegicus ATPase, H+ transporting, V0 subunit D isoform 1 (predicted) (Atp6v0d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34868025-S	ILMN_48725	LOC360710	XM_340981.1	XM_340981.1		360710	34868025	XM_340981.1	LOC360710	XP_340982.1	ILMN_1352348	0002370017	S	2	GAACAAAAGACAGGGTGCTCTACGTGTCTTACGAAGCCGCAGACGACTTC				10q12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC360710), mRNA.					
Rattus norvegicus	RefSeq	GI_62664569-S	ILMN_64927	TNFSF5IP1_PREDICTED	XM_214550.3	XM_214550.3		291539	109506736	XM_214550.3	Tnfsf5ip1_predicted	XP_214550.1	ILMN_1365613	0000070519	S	756	GGCTTCAGATAATCAAACCATGTAGTGACGGCCCCGTGGCCTCTGTCTTG	18	+	64198379-64198401:64199932-64199958	18q12.1	PREDICTED: Rattus norvegicus tumor necrosis factor superfamily, member 5-induced protein 1 (predicted) (Tnfsf5ip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51491899-S	ILMN_281236	DYT1	NM_153303.2	NM_153303.2		266606	51491899	NM_153303.2	Dyt1	NP_695215.2	ILMN_1369915	0001240070	S	1151	CTGCAGGTGGCCATGATGTAGGGACCACAGATGCAACATGGACCTAAAGC	3	-	10026304-10026353	3p12	Rattus norvegicus dystonia 1 (Dyt1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IPI]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IPI]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62717772-S	ILMN_69769	LOC501218	XM_576641.1	XM_576641.1		501218	62717772	XM_576641.1	LOC501218	XP_576641.1	ILMN_1365795	0004200735	S	588	GGGAGAGTGAGTTCCCAGTGTGCATTTGCAAAGCCCTTGACATCTGGTGG					PREDICTED: Rattus norvegicus LOC501218 (LOC501218), mRNA.					
Rattus norvegicus	RefSeq	GI_47577680-S	ILMN_266460	OLR640	NM_001000644.1	NM_001000644.1		404840	47577680	NM_001000644.1	Olr640	NP_001000644.1	ILMN_1352639	0004150739	S	665	CCCTGAAAAACCACAGTGCAGAAGGAAGACGAAAGGCCTTGTCTACATGC	3	+	72531318-72531367	3q24	Rattus norvegicus olfactory receptor 640 (Olr640), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr640	Olr640
Rattus norvegicus	RefSeq	Rn.8590	ILMN_276433	IER5	NM_001025137.1	NM_001025137.1		498256	68342000	NM_001025137.1	Ier5	NP_001020308.1	ILMN_1530409	0003170593	S	1266	TGATAAGGTTTTTGTACAGTATTTTCTCCTCCTCTGTATTGATTTTTGTA	13	-	70058871-70058920	13q21	Rattus norvegicus immediate early response 5 (Ier5), mRNA.					
Rattus norvegicus	RefSeq	GI_62659370-S	ILMN_277059	LAD1_PREDICTED	XM_001063663.1	XM_001063663.1		313325	109498683	XM_001063663.1	Lad1_predicted	XP_001063663.1	ILMN_1372499	0002900162	S	2343	GTGTGCCTGTGACATCTCCACACTATGTCCTAGACCTGTTGATGGCTCCC				13q13	PREDICTED: Rattus norvegicus ladinin (predicted) (Lad1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644884-S	ILMN_300162	RGD1564133_PREDICTED	XM_578101.1	XM_578101.1		502612	62644884	XM_578101.1	RGD1564133_predicted	XP_578101.1	ILMN_1353541	0005290605	S	356	GTGAAGGCAAGCGCCACAGGAAGAGATATTGCAAGGCGAAACTGGTGGGG	3	+	3925429-3925476:3926076-3926077	3p13	PREDICTED: Rattus norvegicus similar to odorant binding protein 2B (predicted) (RGD1564133_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.14603	ILMN_300973	DNAJB11	NM_001015021.1	NM_001015021.1		360734	62543490	NM_001015021.1	Dnajb11	NP_001015021.1	ILMN_1530413	0004060484	S	1800	TCATTGTCTGTGAGAGAACATAATTTCCCGATTTCTTTGGTAATAATAAA	11	-	80360431-80360480	11q23	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 11 (Dnajb11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence ISS]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC112680; LRRGT00084	MGC112680; LRRGT00084
Rattus norvegicus	RefSeq	GI_62543490-S	ILMN_300973	DNAJB11	NM_001015021.1	NM_001015021.1		360734	62543490	NM_001015021.1	Dnajb11	NP_001015021.1	ILMN_1350007	0005860563	S	1643	GGTAGTCTCCCATGAGGATGGGCACACAGCATGCAGAGGAATGGTGAGCG	11	-	80360588-80360637	11q23	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 11 (Dnajb11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence ISS]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	MGC112680; LRRGT00084	MGC112680; LRRGT00084
Rattus norvegicus	RefSeq	GI_62642425-S	ILMN_63804	RGD1305793	XM_219958.4	XM_219958.4		309456	109460185	XM_219958.4	RGD1305793	XP_219958.4	ILMN_1364771	0001450180	S	931	GTGTGTGCAACCGGGGCCACCACGATGATGACCTCAAAGAGTTTAACACA	1	+	251955733-251955782	1q54	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20154 (RGD1305793), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62655047-S	ILMN_270223	SLC39A10_PREDICTED	XM_001061829.1	XM_001061829.1		363229	109487086	XM_001061829.1	Slc39a10_predicted	XP_001061829.1	ILMN_1360296	0006940672	S	2878	GCGATCACGGCAGGCATGTTCCTCTACGTGGCCTTGGTGGATATGCTTCC				9q22	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 10 (predicted) (Slc39a10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651801-S	ILMN_268787	WIZ_PREDICTED	XM_001074919.1	XM_001074919.1		314598	109481593	XM_001074919.1	Wiz_predicted	XP_001074919.1	ILMN_1359824	0005890020	S	3791	CAGTTCCCAAGTCAAACGACCACATCATGCCACGGTGCTTGCTCAGGGGA				7q11	PREDICTED: Rattus norvegicus widely-interspaced zinc finger motifs (predicted), transcript variant 1 (Wiz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657800-S	ILMN_48971	RGD1308138_PREDICTED	XM_344016.3	XM_344016.3		363768	109493076	XM_344016.3	RGD1308138_predicted	XP_344017.3	ILMN_1372203	0002450093	S	917	CCCAGCTTGCTTCGTCCTCAGCTGCTATTTCTGTGAGAGAGAACAATGGG	11	+	46539852-46539864:46541310-46541346	11q12	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC131368 (predicted) (RGD1308138_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638672-S	ILMN_61231	LOC361485	XM_341762.2	XM_341762.2		361485	62638672	XM_341762.2	LOC361485	XP_341763.2	ILMN_1364549	0005900731	S	1763	TTAGAGAACTGTTTGGGGGTTGCGGGGCGAGGAAGACAGATAAGCTGGCC					PREDICTED: Rattus norvegicus LOC361485 (predicted) (LOC361485), mRNA.					
Rattus norvegicus	RefSeq	GI_62718306-S	ILMN_288035	LOC690340	XM_001074151.1	XM_001074151.1		690340	109513485	XM_001074151.1	LOC690340	XP_001074151.1	ILMN_1372108	0000630672	S	678	CCAGCAACGTCCAGATCCAGCATTATCAGGTCTCAGAAAGTGCAAGAGAG	Un|NW_047883.1	-	978103-978124:978847-978874		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC690340), mRNA.					
Rattus norvegicus	RefSeq	GI_51948407-S	ILMN_275552	FUCA2	NM_001004218.1	NM_001004218.1		292485	51948407	NM_001004218.1	Fuca2	NP_001004218.1	ILMN_1352132	0002900332	S	1373	AAAGCCAAGCGGCATTGTGGTGGAGTTGCCCCGGCTAAGCGTTCATCAGA	1	+	8304140-8304189	1p13	Rattus norvegicus fucosidase, alpha-L- 2, plasma (Fuca2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence TAS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose [goid 4560] [evidence TAS]; Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose [goid 4560] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]	MGC93735	MGC93735
Rattus norvegicus	RefSeq	GI_38454251-S	ILMN_278788	MRPS18A	NM_198756.1	NM_198756.1		301249	38454251	NM_198756.1	Mrps18a	NP_942051.1	ILMN_1369755	0004120593	S	770	TCCTGGTCACTGTTCTGATGACTGGCTGTGGCCGAGGTCGGAGCAGGAAA	9	-	10419080-10419129	9q12	Rattus norvegicus mitochondrial ribosomal protein S18A (Mrps18a), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The smaller of the two subunits of a mitochondrial ribosome [goid 5763] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC73006	MGC73006
Rattus norvegicus	RefSeq	GI_27721552-S	ILMN_56501	NGP_PREDICTED	XM_236646.2	XM_236646.2		301026	109483984	XM_236646.2	Ngp_predicted	XP_236646.1	ILMN_1363203	0007050400	S	221	CAGTGTGCATTTCCACCACGGAGAGACGGCTTGAAAACTGCGACTTCCGG	8	+	114796513-114796562	8q32	PREDICTED: Rattus norvegicus neutrophilic granule protein (predicted) (Ngp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24475717-A	ILMN_293034	CYP2C23	NM_031839.2	NM_031839.2		83790	24475717	NM_031839.2	Cyp2c23	NP_114027.1	ILMN_1376623	0001500341	S	1698	CCCCAAGCACAACTGACACCAGATATGCAAGACCCTCATCAGACGCCACC	1	+	249228472-249228521	1q54	Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 23 (Cyp2c23), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence NAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA];  [goid 8392] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34862536-S	ILMN_66231	LOC366800	XM_345778.1	XM_345778.1		366800	34862536	XM_345778.1	LOC366800	XP_345779.1	ILMN_1372564	0003940519	S	265	TCAGTAACGCTGTGAGATGGGCAATAGTAGCGCTCCAGACCGGTGGAGTC					PREDICTED: Rattus norvegicus similar to hypothetical protein C230069C04 (LOC366800), mRNA.					
Rattus norvegicus	RefSeq	GI_62639132-S	ILMN_62208	LOC499096	XM_574387.1	XM_574387.1		499096	62639132	XM_574387.1	LOC499096	XP_574387.1	ILMN_1369562	0004070092	S	680	GATGCCTTCAGTAGATGAGGAAGGACAGAGAACAGCTTCGCATGGTGCAC					PREDICTED: Rattus norvegicus similar to Zinc finger protein 45 (BRC1744) (LOC499096), mRNA.					
Rattus norvegicus	RefSeq	GI_62661604-S	ILMN_283239	DLEU7_PREDICTED	XM_214218.3	XM_214218.3		290308	62661604	XM_214218.3	Dleu7_predicted	XP_214218.2	ILMN_1369553	0005720167	S	1438	ACCACTGGGCAGGGAGAGCTGCTTCTAAACCTTGCACTTTCATATACTGC	15	-	41493154-41493203	15p12	PREDICTED: Rattus norvegicus deleted in lymphocytic leukemia, 7 (predicted) (Dleu7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653377-S	ILMN_268116	NCAPD3	NM_001034000.1	NM_001034000.1		315508	77404255	NM_001034000.1	Ncapd3	NP_001029172.1	ILMN_1349604	0001240408	S	4754	GCGCCCTGCCAACTCCTGTCTAGGACACCAATGCAACTTTGTGCAGCTTG				8q13	Rattus norvegicus non-SMC condensin II complex, subunit D3 (Ncapd3), mRNA.	A multisubunit protein complex that plays a central role in the condensation of chromosomes that remain in the nucleus [goid 799] [evidence IEA]; A multisubunit protein complex that plays a central role in the condensation of chromosomes that remain in the nucleus [goid 799] [evidence ISS]	The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654561-S	ILMN_268116	NCAPD3	NM_001034000.1	NM_001034000.1		315508	77404255	NM_001034000.1	Ncapd3	NP_001029172.1	ILMN_1367666	0006380524	S	1016	GCTGGCCTACTATGGATTGTACTTGCTGTGCTCCCCAGTTCATGGAGAAG	8	+	26663042-26663091	8q13	Rattus norvegicus non-SMC condensin II complex, subunit D3 (Ncapd3), mRNA.	A multisubunit protein complex that plays a central role in the condensation of chromosomes that remain in the nucleus [goid 799] [evidence IEA]; A multisubunit protein complex that plays a central role in the condensation of chromosomes that remain in the nucleus [goid 799] [evidence ISS]	The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence IEA]; The cell cycle process whereby chromatin structure is compacted prior to mitosis in eukaryotic cells [goid 7076] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652673-S	ILMN_296320	LRRC14	NM_001024354.1	NM_001024354.1		500900	66730512	NM_001024354.1	Lrrc14	NP_001019525.1	ILMN_1369569	0006380091	S	1341	ACTCGCTGTGCCAGTCTCCGATACCTTGGTCTCTATGGCAACCCTTTGTC	7	+	114765778-114765827	7q34	Rattus norvegicus leucine rich repeat containing 14 (Lrrc14), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650292-S	ILMN_52459	SIX2_PREDICTED	XM_345630.3	XM_345630.3		366542	109477894	XM_345630.3	Six2_predicted	XP_345631.3	ILMN_1374481	0004810279	S	835	CTGCAGGACTCCATACTCAACCCCATGTCGGCCAACCTTGTGGACCTAGG	6	-	9095097-9095146	6q12	PREDICTED: Rattus norvegicus sine oculis-related homeobox 2 homolog (Drosophila) (predicted) (Six2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51871604-A	ILMN_275547	CENPC1	NM_001004098.1	NM_001004098.1		305270	51871604	NM_001004098.1	Cenpc1	NP_001004098.1	ILMN_1376601	0004230722	S	2398	CCAGGCAACATTGGCAAAGGACCCGGAAACAAGAGAGATTGTCCCCATGG	14	+	23823891-23823940	14p21	Rattus norvegicus centromere protein C 1 (Cenpc1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cenpc	Cenpc
Rattus norvegicus	RefSeq	GI_62656488	ILMN_296794	CACNA1G	NM_031601.3	NM_031601.3		29717	31377473	NM_031601.3	Cacna1g	NP_113789.2	ILMN_1650332	0005290195	S	7363	ACCTGCCTTCTTCAGTGGCTGGTGGGGATGACGAGCAGAACTTCCGGAGA	10	-	83043769-83043818	10q26-q31	Rattus norvegicus calcium channel, voltage-dependent, T type, alpha 1G subunit (Cacna1g), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665393-S	ILMN_282405	CBFA2T3_PREDICTED	XM_001079414.1	XM_001079414.1		361431	109509018	XM_001079414.1	Cbfa2t3_predicted	XP_001079414.1	ILMN_1369167	0000520059	S	2725	GGGGGGATCGGCGCGCACACAGAAGAGATGCCGAGAAACATTTCAGTTTC				19q12	PREDICTED: Rattus norvegicus core-binding factor, runt domain, alpha subunit 2; translocated to, 3 (predicted) (Cbfa2t3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654223-S	ILMN_268640	ASTE1	XM_001081962.1	XM_001081962.1		363130	109483912	XM_001081962.1	Aste1	XP_001081962.1	ILMN_1372987	0005900520	S	2068	GCCTGGGAACCACTTCAGACACCAAGCACTGGTATGACAGAAGCAACCGG	8	+	110508814-110508863	8q32	PREDICTED: Rattus norvegicus asteroid homolog 1 (Drosophila) (Aste1), mRNA.					
Rattus norvegicus	RefSeq	GI_54262189-S	ILMN_276666	CXCL11	NM_182952.2	NM_182952.2		305236	54262189	NM_182952.2	Cxcl11	NP_891997.1	ILMN_1371535	0006660088	S	806	CTGTTTCCTGAGTTAATCACACTGGCTTCCCACTGAGGCAGTCTAAAGGG	14	+	17253175-17253224	14p22	Rattus norvegicus chemokine (C-X-C motif) ligand 11 (Cxcl11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IMP]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IMP]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Interacting selectively with any chemokine receptor [goid 42379] [evidence TAS]	SCYB11	SCYB11
Rattus norvegicus	RefSeq	GI_34873018-S	ILMN_64559	DDX51_PREDICTED	XM_222252.3	XM_222252.3		304570	109496204	XM_222252.3	Ddx51_predicted	XP_222252.2	ILMN_1352406	0003130471	S	1590	GGGAAAGATCCAGCTCCTTATCAGCACAGATGCTACCGCTCGAGGCATCG	12	-	46157155-46157190:46157370-46157383	12q16	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (predicted) (Ddx51_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649148-S	ILMN_297479	RGD1305797_PREDICTED	XM_001060174.1	XM_001060174.1		298186	109476637	XM_001060174.1	RGD1305797_predicted	XP_001060174.1	ILMN_1350423	0006900440	S	1382	GGCTTGAAGCAGAGAATCGCCGGGAAATCTCTCCCAACCGAGAAGTTCGC				5q31	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ33868 (predicted) (RGD1305797_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20301965-S	ILMN_267421	SYT12	NM_138835.1	NM_138835.1		191595	20301965	NM_138835.1	Syt12	NP_620190.1	ILMN_1354055	0004670315	S	1761	AGGAAGTATGTCCATTGGCCTGCAGAGGGATGTGGGCTTCAGCACTGGCC	1	-	207021932-207021981	1q42	Rattus norvegicus synaptotagmin XII (Syt12), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	Srg1	Srg1
Rattus norvegicus	RefSeq	GI_62663170	ILMN_272880	RGD1311345	XM_001067219.1	XM_001067219.1		361201	109505423	XM_001067219.1	RGD1311345	XP_001067219.1	ILMN_1649759	0004540441	S	1248	GCGGACAGCCAGGGCTACACAGAGGAAACAAGGAAAAGGACAGGTGGAAG				17p14	PREDICTED: Rattus norvegicus similar to CG9752-PA (RGD1311345), mRNA.					
Rattus norvegicus	RefSeq	GI_16758987-S	ILMN_270087	SLC2A8	NM_053494.1	NM_053494.1		85256	16758987	NM_053494.1	Slc2a8	NP_445946.1	ILMN_1350380	0004010397	S	1879	GGTCCTAAGCAACTGGCCCATAACCTCACTTGACTGGGGGATGAGAAAGG	3	-	11962712-11962761	3p11	Rattus norvegicus solute carrier family 2, (facilitated glucose transporter) member 8 (Slc2a8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEP]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence ISS]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence ISS]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IEA]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]	Glut8	Glut8
Rattus norvegicus	RefSeq	GI_62663451-S	ILMN_55493	LOC498734	XM_574010.1	XM_574010.1		498734	62663451	XM_574010.1	LOC498734	XP_574010.1	ILMN_1361604	0004010053	S	1021	GAATGCTTCACTCCTTCTTTAAAAGGGGAATATGAATACCTGTGGCAGGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC498734), mRNA.					
Rattus norvegicus	RefSeq	GI_62648959-S	ILMN_273610	NANS_PREDICTED	XM_001066033.1	XM_001066033.1		298071	109476368	XM_001066033.1	Nans_predicted	XP_001066033.1	ILMN_1355184	0001450278	S	1725	TAGCCATAGGGGGCGGTGCAGAAATCAACCCCACCATAAGCACCAGTGTC				5q22	PREDICTED: Rattus norvegicus N-acetylneuraminic acid synthase (sialic acid synthase) (predicted) (Nans_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645858-S	ILMN_56106	RGD1561831_PREDICTED	XM_345432.3	XM_345432.3		366189	109468814	XM_345432.3	RGD1561831_predicted	XP_345433.3	ILMN_1353665	0004760373	S	1997	CCCTGCGCCCCAAGGAGAAGTCCCGGGTCCGATTTGAGATTTTCCCCACT	3	+	117658493-117658542	3q36	PREDICTED: Rattus norvegicus similar to transglutaminase E3 (predicted) (RGD1561831_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638678-S	ILMN_61496	PDCD2	XM_341763.3	XM_341763.3		58934	109457904	XM_341763.3	Pdcd2	XP_341764.3	ILMN_1356116	0003940035	S	966	GGTACAAGTGTGGACTGGGGCATCTTGGCTGTCTTCACCTGTGCTGAGAG	1	-	54412199-54412248	1q12	PREDICTED: Rattus norvegicus programmed cell death 2 (Pdcd2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9845243-S	ILMN_274403	CRIPT	NM_019907.1	NM_019907.1		56725	9845243	NM_019907.1	Cript	NP_063972.1	ILMN_1362999	0007050739	S	1246	CTGCCAGGGGGCTGCTGTGAATGAAGGTTTTTCTTGTTGCCTTCTTTGGG	6	+	10482816-10482865	6q12	Rattus norvegicus cysteine-rich PDZ-binding protein (Cript), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_50582541-S	ILMN_265280	NOL3	NM_053516.2	NM_053516.2		85383	50582541	NM_053516.2	Nol3	NP_445968.2	ILMN_1361150	0002320494	S	1298	GTCTTGAAGGGGGGACCTGAGAGAAAACTGGAGTAGACAGAAGCCACACG	19	+	35095777-35095826	19q11	Rattus norvegicus nucleolar protein 3 (apoptosis repressor with CARD domain) (Nol3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The cytoplasm of a muscle fiber; includes the sarcoplasmic reticulum [goid 16528] [evidence ISS]; The cytoplasm of a muscle fiber; includes the sarcoplasmic reticulum [goid 16528] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence TAS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Arc	Arc
Rattus norvegicus	RefSeq	GI_62666670-S	ILMN_263066	RGD1560493_PREDICTED	XM_001058469.1	XM_001058469.1		315365	109512444	XM_001058469.1	RGD1560493_predicted	XP_001058469.1	ILMN_1371665	0002900088	S	2134	CCCCTGGTAGACCAAAGCGTTCCTCCTGTGTACAGCGATGTGGCAAGAGC				Xq14	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 45 (predicted) (RGD1560493_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638406-S	ILMN_48083	RGD1563246_PREDICTED	XM_574288.2	XM_574288.2		498997	109457679	XM_574288.2	RGD1563246_predicted	XP_574288.1	ILMN_1363395	0000630204	S	1958	GTGGGGTTGGAGTAAGGCACGCTGTGGAAGAAATCATAGAACCGGAGATC	1	+	29156614-29156663	1p11	PREDICTED: Rattus norvegicus similar to thrombospondin, type I, domain containing 2 (predicted) (RGD1563246_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666139	ILMN_278220	RGD1560062_PREDICTED	XM_001061207.1	XM_001061207.1		309816	109510182	XM_001061207.1	RGD1560062_predicted	XP_001061207.1	ILMN_1650931	0006550088	S	5816	CTGTGTTTGTCGGAGGGGTTCCAGAGTCCTTGCTGACGCCCCGTTTGACT				20q12	PREDICTED: Rattus norvegicus similar to Laminin alpha-4 chain precursor (predicted) (RGD1560062_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_45433569-S	ILMN_280156	RAB1	NM_031090.2	NM_031090.2		81754	45433569	NM_031090.2	Rab1	NP_112352.2	ILMN_1355986	0004120541	S	800	CGCCTCCGTCCTTTTCTCACAGCAATGAATTCGCAATCTGAACCCAAGTG	14	+	101027280-101027329	14q22	Rattus norvegicus RAB1, member RAS oncogene family (Rab1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IDA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]	Rab1r; Ac2-048	Rab1r; Ac2-048
Rattus norvegicus	RefSeq	GI_62638457-S	ILMN_50419	LOC499005	XM_574298.1	XM_574298.1		499005	62638457	XM_574298.1	LOC499005	XP_574298.1	ILMN_1371183	0002030546	S	867	ACTGCAGGAAGAAGGTCCTACAGGAGGACAAAACAGAACAACTACCACAT				1p11	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC499005), mRNA.					
Rattus norvegicus	RefSeq	GI_62665874-S	ILMN_279730	SMARCB1	NM_001025728.1	NM_001025728.1		361825	71043653	NM_001025728.1	Smarcb1	NP_001020899.1	ILMN_1369924	0001770487	S	1220	CCCCTGCTGGAGACACTGACGGATGCTGAGATGGAGAAGAAGATCCGGGA	20	+	13161700-13161749	20p12	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 (Smarcb1), mRNA.	A chromosome found in the nucleus of a eukaryotic cell [goid 228] [evidence IEA]; A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery [goid 1741] [evidence IEA]; A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery [goid 1741] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of a family of protein complexes that regulate transcription by remodeling chromatin. Swi/Snf complexes comprise nine or more proteins, including both conserved (core) and nonconserved components; the Swi2/Snf2 ATPase is one of the core components [goid 16514] [evidence IEA]; Any of a family of protein complexes that regulate transcription by remodeling chromatin. Swi/Snf complexes comprise nine or more proteins, including both conserved (core) and nonconserved components; the Swi2/Snf2 ATPase is one of the core components [goid 16514] [evidence ISS]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The hatching of the cellular blastocyst from the zona pellucida [goid 1835] [evidence IEA]; The hatching of the cellular blastocyst from the zona pellucida [goid 1835] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process involved in the replication of a retroviral genome. Retroviruses use RNA as their nucleic acid and reverse transcriptase to copy their genome into the DNA of the host cells chromosomes [goid 45090] [evidence IEA]; Any process involved in the replication of a retroviral genome. Retroviruses use RNA as their nucleic acid and reverse transcriptase to copy their genome into the DNA of the host cells chromosomes [goid 45090] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116367	MGC116367
Rattus norvegicus	RefSeq	GI_62718668-S	ILMN_52453	LOC367613	XM_578926.1	XM_578926.1		367613	62718668	XM_578926.1	LOC367613	XP_578926.1	ILMN_1370857	0002810068	S	355	CCAGCTGCAGACGTTGTCATTATCGCACATGTCCACCAGGGGGTGATCGT					PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC367613), mRNA.					
Rattus norvegicus	RefSeq	GI_62666736-S	ILMN_69546	LOC317418	XM_228869.2	XM_228869.2		317418	62666736	XM_228869.2	LOC317418	XP_228869.2	ILMN_1352780	0005550161	S	816	CCAGGTTTCCCAGCATAGTGCCTCCTAGGTGCAGTGAATTGGAAGATGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310007F12 (LOC317418), mRNA.					
Rattus norvegicus	RefSeq	GI_47577184-S	ILMN_288433	OLR745	NM_001000578.1	NM_001000578.1		366123	47577184	NM_001000578.1	Olr745	NP_001000578.1	ILMN_1364701	0004150180	S	302	TCATGCACTTCTTTGGTGGCATTGAGATGTTCCTGCTCACAGTGATGGCC	3	+	74747434-74747483	3q24	Rattus norvegicus olfactory receptor 745 (Olr745), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr745; ratchr3-74643505-74644434_ORF	Olr745; ratchr3-74643505-74644434_ORF
Rattus norvegicus	RefSeq	GI_62656646-S	ILMN_61269	LOC287558	XM_213423.3	XM_213423.3		287558	62656646	XM_213423.3	LOC287558	XP_213423.1	ILMN_1354584	0005720026	S	26	GGCCTGCGGGGAACAGGACTTCTAAAACCAAGTATGTCTGGAAGGCTGTG				10q26	PREDICTED: Rattus norvegicus similar to ribosomal protein L35a (LOC287558), mRNA.					
Rattus norvegicus	RefSeq	GI_27545419-S	ILMN_278567	TAOK1	NM_173327.1	NM_173327.1		286993	27545419	NM_173327.1	Taok1	NP_775449.1	ILMN_1354663	0003450463	S	2985	TCGAGGTAGCAGTATAGGAGTCCGCAATAGCCCCCAGGCTCTGAGGCGGA	10	+	66584592-66584625	10q26	Rattus norvegicus TAO kinase 1 (Taok1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_54635059-S	ILMN_283278	OLR1696	NM_206850.1	NM_206850.1		294158	54635059	NM_206850.1	Olr1696	NP_996732.1	ILMN_1370679	0006770403	S	287	GAGGGATCTCTTGGGAGGGTTGTGCCTCACAGATGTTCTTCTTCATATTC	20	-	697775-697824	20p12	Rattus norvegicus olfactory receptor 1696 (Olr1696), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	SCR D-8	SCR D-8
Rattus norvegicus	RefSeq	GI_47606366-S	ILMN_280431	OLR380	NM_001001277.1	NM_001001277.1		293813	47606366	NM_001001277.1	Olr380	NP_001001277.1	ILMN_1353968	0001400397	S	351	GGCCTATGATCGTTATGTGGCTATATGCAACCCTCTCCTTTATGCCATGG	1	-	216935461-216935510	1q43	Rattus norvegicus olfactory receptor 380 (Olr380), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr380	Olr380
Rattus norvegicus	RefSeq	GI_8394410-S	ILMN_269051	PVR	NM_017076.1	NM_017076.1		25066	8394410	NM_017076.1	PVR	NP_058772.1	ILMN_1371772	0000510435	S	1794	CGTCTGTCTCTACCTCCCAAGTGCTGCAGTTAAAGGTTTGTGTGTGCCAC	1	-	79213713-79213762	1q21	Rattus norvegicus poliovirus receptor (PVR), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]	Combining with a virus component to initiate a change in cell activity [goid 1618] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tage4; Taa1	Tage4; Taa1
Rattus norvegicus	RefSeq	GI_62647271-S	ILMN_285373	RGD1566402_PREDICTED	XM_001059505.1	XM_001059505.1		500127	109473530	XM_001059505.1	RGD1566402_predicted	XP_001059505.1	ILMN_1354843	0006110725	S	2330	CCCCGAAGGAACCAAAGCGAATTTTAAGATGCAATGTAGAGGGGGGTGGG					PREDICTED: Rattus norvegicus similar to homeobox protein (predicted) (RGD1566402_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660569-S	ILMN_270545	LDB2_PREDICTED	XM_001059368.1	XM_001059368.1		289664	109500721	XM_001059368.1	Ldb2_predicted	XP_001059368.1	ILMN_1353581	0000110092	S	2311	CCTTCACCTGTTTCTTTCATGGGGACTGTTTCTTTTGGGGCAAGTTCAGC				14q21	PREDICTED: Rattus norvegicus LIM domain binding 2 (predicted) (Ldb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652404-S	ILMN_67589	LOC500867	XM_576265.1	XM_576265.1		500867	62652404	XM_576265.1	LOC500867	XP_576265.1	ILMN_1375194	0004730239	S	640	AACACCCATTCAGAGCCTATCCCCACATGTGGCCCATACATATACAGCCA					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC500867), mRNA.					
Rattus norvegicus	RefSeq	GI_62642363-S	ILMN_60785	WNT8B_PREDICTED	XM_219959.3	XM_219959.3		293990	62642363	XM_219959.3	Wnt8b_predicted	XP_219959.3	ILMN_1355107	0000520091	S	327	ACCCCAGTGTCCAGCCTCTGTCTCTGGCTGTGGGGGACAACGCTGACTGA				1q54	PREDICTED: Rattus norvegicus wingless related MMTV integration site 8b (predicted) (Wnt8b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_37360978-S	ILMN_301625	PIGW	NM_194461.1	NM_194461.1		378774	37360978	NM_194461.1	Pigw	NP_919443.1	ILMN_1353779	0001240139	S	1383	CCTGACGGTGGATACATTACACACTGGTGCCTTTTGGACCTTAGCTGTGC	10	-	73152925-73152974	10q26	Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis, class W (Pigw), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane [goid 16254] [evidence ISS]	Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule [goid 8374] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor) [goid 16746] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31342656-S	ILMN_299273	SDCCAG8	NM_177929.2	NM_177929.2		305002	31342656	NM_177929.2	Sdccag8	NP_808790.1	ILMN_1365278	0003990156	S	2412	CTGTGCTACAGACAGGGAGTGCTTCAGCGTCAACTGGCTAGGGCTAGTCG	13	+	92802529-92802578	13q25	Rattus norvegicus serologically defined colon cancer antigen 8 (Sdccag8), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]			MGC93052	MGC93052
Rattus norvegicus	RefSeq	GI_62640389-S	ILMN_288213	RGD1560408_PREDICTED	XM_001056704.1	XM_001056704.1		499166	109462063	XM_001056704.1	RGD1560408_predicted	XP_001056704.1	ILMN_1353802	0001990026	S	1969	ACCGTCCTCTTCTGCTGTGACTTGAACACTACCTCTCGTGAAGCCTACTG				1q22	PREDICTED: Rattus norvegicus similar to Mannoside acetylglucosaminyltransferase 4, isoenzyme A (predicted) (predicted) (RGD1560408_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656224-S	ILMN_297058	LOC303215	XM_001077639.1	XM_001077639.1		303215	109490972	XM_001077639.1	LOC303215	XP_001077639.1	ILMN_1365587	0005900068	S	2159	GTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTT					PREDICTED: Rattus norvegicus similar to Charcot-Marie-Tooth duplicated region transcript 1 (LOC303215), mRNA.					
Rattus norvegicus	RefSeq	GI_62639307-S	ILMN_289032	PSMD8	XM_001075072.1	XM_001075072.1		292766	109461589	XM_001075072.1	Psmd8	XP_001075072.1	ILMN_1373437	0000610364	S	1208	CCAGTGGGATGGTGGAGATAAGAATTTGGGAGTTTGGGGGCCTCTGGGCC				1q21	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 (Psmd8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes, unfolds ubiquitinated proteins and translocates them to the proteasome core complex [goid 5838] [evidence IEA]; A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes, unfolds ubiquitinated proteins and translocates them to the proteasome core complex [goid 5838] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742670-S	ILMN_284312	D123	NM_053877.1	NM_053877.1		116656	25742670	NM_053877.1	D123	NP_446329.1	ILMN_1351059	0002120102	S	1127	CTTCCCAGTGACCCAAACTAGGTGCAGATGGGTGGGCAGTATGCAAAATC	17	+	83562778-83562827	17q12.3	Rattus norvegicus D123 gene product (D123), mRNA.					
Rattus norvegicus	RefSeq	GI_62718522-S	ILMN_66120	LOC288979	XM_222564.4	XM_222564.4		288979	109513725	XM_222564.4	LOC288979	XP_222564.3	ILMN_1367430	0000060750	S	1777	CGGGTTAAGGGCTGCAAGACCCACCAGGAAGAAAGACCCAGGTGAACGCT	Un|NW_047910.1	-	30976-31025		PREDICTED: Rattus norvegicus similar to Cerebellin-2 precursor (Cerebellin-like protein) (LOC288979), mRNA.					
Rattus norvegicus	RefSeq	GI_9506804-S	ILMN_295233	IL18	NM_019165.1	NM_019165.1		29197	9506804	NM_019165.1	Il18	NP_062038.1	ILMN_1352725	0001660494	S	286	CTGGCTGTGACCCTATCTGTGAAGGATGGAAGGATGTCTACCCTCTCCTG	8	+	53940624-53940673	8q23	Rattus norvegicus interleukin 18 (Il18), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEP]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence TAS]; An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [evidence ISS]; An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [evidence IEA]; The chemical reactions and pathways resulting in the formation of interferon-gamma [goid 42095] [evidence ISS]; The chemical reactions and pathways resulting in the formation of interferon-gamma [goid 42095] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [evidence IEA]; The chemical reactions and pathways resulting in the formation of interferon-gamma [goid 42095] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [pmid 11466388] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [pmid 11477102] [evidence ISS]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [pmid 11506998] [evidence IDA]; An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [pmid 8766574] [evidence ISS]; The chemical reactions and pathways resulting in the formation of interferon-gamma [goid 42095] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [pmid 8766574] [evidence ISS]; Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep [goid 45188] [pmid 11506998] [evidence TAS]	Interacting selectively with the interleukin-18 receptor [goid 45515] [evidence TAS]; Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]	IL-18	IL-18
Rattus norvegicus	RefSeq	GI_62657346-S	ILMN_273501	MRPS7	XM_001081692.1	XM_001081692.1		113958	109492241	XM_001081692.1	Mrps7	XP_001081692.1	ILMN_1367484	0002480368	S	983	GATTCCCAGCAGCCCGTGGAGACTCACTAACCACCTGTAACTCCCGTTCC				10q32.3	PREDICTED: Rattus norvegicus mitchondrial ribosomal protein S7 (Mrps7), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645424-S	ILMN_270620	ALX4_PREDICTED	XM_001078593.1	XM_001078593.1		296511	109470347	XM_001078593.1	Alx4_predicted	XP_001078593.1	ILMN_1366417	0006980053	S	1250	CTGTTTGGAGCAGCTGGCATCAGTCCGGGCCTCAACGGCTACGAGATGAA				3q24	PREDICTED: Rattus norvegicus aristaless 4 (predicted) (Alx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642272-S	ILMN_56555	PIK3AP1_PREDICTED	XM_220008.3	XM_220008.3		294048	62642272	XM_220008.3	Pik3ap1_predicted	XP_220008.3	ILMN_1366592	0006590497	S	4795	GCCATTCTGGAAGTGTCCCTCAATCCTCCTGTCACTTGTTTGGGAGACGT				1q54	PREDICTED: Rattus norvegicus phosphoinositide-3-kinase adaptor protein 1 (predicted) (Pik3ap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663353-S	ILMN_60741	LOC291014	XM_225194.3	XM_225194.3		291014	62663353	XM_225194.3	LOC291014	XP_225194.3	ILMN_1370945	0006770451	S	2216	CATCCACAACCCAGTGTGTAACCACAGCCTCTCCTCAGAACTCATCAGGC				17p14	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC291014), mRNA.					
Rattus norvegicus	RefSeq	GI_61557350-S	ILMN_271398	COPS8	NM_001013227.1	NM_001013227.1		363283	61557350	NM_001013227.1	Cops8	NP_001013245.1	ILMN_1361761	0002350286	S	1290	CCTTTCAGAGGAAGGGAGGAGCATGGAGTGCAGTGTGTGCTGAGGGAGCT	9	+	89812038-89812087	9q35	Rattus norvegicus COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) (Cops8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence ISS]; A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome [goid 8180] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651545-S	ILMN_69259	LOC503095	XM_578615.1	XM_578615.1		503095	62651545	XM_578615.1	LOC503095	XP_578615.1	ILMN_1367345	0002320100	S	620	AACAGCTTACGTGGAACTCAGCATCCTGCAGAGGCCTGGACAAAGCCTGG				6q33	PREDICTED: Rattus norvegicus similar to Ig H-chain (LOC503095), mRNA.					
Rattus norvegicus	RefSeq	GI_62667299-S	ILMN_54951	LOC503468	XM_579022.1	XM_579022.1		503468	62667299	XM_579022.1	LOC503468	XP_579022.1	ILMN_1354710	0002360315	S	587	CACCATGGAGTTTGCCATAGTCTGGAGAGGAGCATTTGCGGTTGCAATGG					PREDICTED: Rattus norvegicus similar to PSARL protein (LOC503468), mRNA.					
Rattus norvegicus	RefSeq	GI_62717854-S	ILMN_52192	LOC501238	XM_576657.1	XM_576657.1		501238	62717854	XM_576657.1	LOC501238	XP_576657.1	ILMN_1350130	0006110347	S	689	CCTGGACCTATGGTGTCACACCAGGTTTTATAAAATTCAGTGCGTGGACG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501238), mRNA.					
Rattus norvegicus	RefSeq	GI_62660455-S	ILMN_48976	LOC498363	XM_347184.2	XM_347184.2		498363	62660455	XM_347184.2	LOC498363	XP_347185.2	ILMN_1366430	0004280168	S	323	GGAGTCGGATGACAACATGGGATTTGACCTGTTTAATTAAGTTCCCCTGC					PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P2 (LOC498363), mRNA.					
Rattus norvegicus	RefSeq	GI_57114223-S	ILMN_266245	V1RG7	NM_001008902.1	NM_001008902.1		494254	57114223	NM_001008902.1	V1rg7	NP_001008902.1	ILMN_1355618	0000870440	S	720	CCATGGTGCTCAGCATTTTCTAAAAGTCTCTCCAGAGGACCGAGCCACCC	1	+	71715682-71715731	1q21	Rattus norvegicus vomeronasal 1 receptor, G7 (V1rg7), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644417-S	ILMN_274716	RGD1566242_PREDICTED	XM_001077768.1	XM_001077768.1		295457	109467678	XM_001077768.1	RGD1566242_predicted	XP_001077768.1	ILMN_1366244	0006180148	S	413	ACAGCATTACCGGGTTCGCCCGCCTCACAGTTGCAGAATGGCTCCGCTTA				2q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500009M05 (predicted) (RGD1566242_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665074-S	ILMN_53009	LOC364969	XM_344739.2	XM_344739.2		364969	62665074	XM_344739.2	LOC364969	XP_344740.2	ILMN_1369006	0005080097	S	88	AAGATGGACTAGACACTCCTGCAGGGGGTAAGAAACCCCTCTGTCCAGAG					PREDICTED: Rattus norvegicus similar to Myosin IXb (Unconventional myosin-9b) (LOC364969), mRNA.					
Rattus norvegicus	RefSeq	GI_6980967-S	ILMN_291278	GNRH1	NM_012767.1	NM_012767.1		25194	6980967	NM_012767.1	Gnrh1	NP_036899.1	ILMN_1373686	0004230161	S	313	GCACTGGCCCAGAAGGATCCACAACATCCGAGTGTGACATTGACGCTGAG	15	+	47307363-47307412	15p12	Rattus norvegicus gonadotropin-releasing hormone 1 (Gnrh1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The release of a mature ovum/oocyte from an ovary [goid 30728] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids [goid 31960] [evidence IEP]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ];  [goid 5183] [evidence IEA]	GNRHA; Gnrh; RGNRHG1	GNRHA; Gnrh; RGNRHG1
Rattus norvegicus	RefSeq	GI_62652738-S	ILMN_263969	GTPBP1_PREDICTED	XM_001075683.1	XM_001075683.1		300077	109482469	XM_001075683.1	Gtpbp1_predicted	XP_001075683.1	ILMN_1349875	0002320338	S	2102	CACCAAGCTCCTCCAGACAACCAACAACTCCCCCATGAACTCCAAGCCCC				7q34	PREDICTED: Rattus norvegicus GTP binding protein 1 (predicted), transcript variant 4 (Gtpbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718467-S	ILMN_62317	LOC503354	XM_578892.1	XM_578892.1		503354	62718467	XM_578892.1	LOC503354	XP_578892.1	ILMN_1366247	0002690450	S	228	GGAGGGGTTACAAATCCTCTTCCCTGTCAAAGTAGTTATGCCCTCTGGGA					PREDICTED: Rattus norvegicus similar to PYM protein (LOC503354), mRNA.					
Rattus norvegicus	RefSeq	GI_58865361-A	ILMN_270022	SERPINF2	NM_001011892.1	NM_001011892.1		287527	58865361	NM_001011892.1	Serpinf2	NP_001011892.1	ILMN_1376805	0005270487	S	1902	CATGGGTGGAGGCGGACCTACCCTGACTCTGATGTGCCTTGCTGAAGACA	10	-	62748331-62748380	10q24	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade F, member 2 (Serpinf2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of the serine endopeptidase plasmin [goid 30568] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62658960-S	ILMN_280829	SLC24A6	NM_001017488.1	NM_001017488.1		498185	62945329	NM_001017488.1	Slc24a6	NP_001017488.1	ILMN_1355016	0005900440	S	2521	TGGGATGACCCTCCCAGGGGTGTCTTGCAAGGGGTGTGACCAGCCTTTTA	12	-	37227939-37227988	12q16	Rattus norvegicus solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 (Slc24a6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with lithium ions (Li+) [goid 31403] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661585-S	ILMN_50557	LOC290295	XM_224270.3	XM_224270.3		290295	62661585	XM_224270.3	LOC290295	XP_224270.3	ILMN_1361949	0007000373	S	10453	AGGGGCCCTGCTTCATCTTGGGACATCAGTGGACCAGCTCTGTCTTTGTC					PREDICTED: Rattus norvegicus similar to putative E1-E2 ATPase (LOC290295), mRNA.					
Rattus norvegicus	RefSeq	GI_62647408	ILMN_65496	LOC500172	XM_575524.1	XM_575524.1		500172	62647408	XM_575524.1	LOC500172	XP_575524.1	ILMN_1649743	0003830215	S	5	GAATGTGCCCACTCAACTCCTTGGGTTGCTGATACTCTGGCTTACAGGTG				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC500172), mRNA.					
Rattus norvegicus	RefSeq	GI_62639452-S	ILMN_293699	RGD1561211_PREDICTED	XM_001076030.1	XM_001076030.1		502317	109461647	XM_001076030.1	RGD1561211_predicted	XP_001076030.1	ILMN_1369327	0006350035	S	1846	GAAACCCTATGGCACTATCAGCCATGGAGTGGTGGAGGTGGACCCCATGC				1q21	PREDICTED: Rattus norvegicus similar to Amyloid beta (A4) precursor-like protein 1 (predicted), transcript variant 3 (RGD1561211_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639702-S	ILMN_273414	NOSIP_PREDICTED	XM_001078785.1	XM_001078785.1		292894	109461897	XM_001078785.1	Nosip_predicted	XP_001078785.1	ILMN_1357049	0006020372	S	636	ATTCCCTCACTAACGCCCGAGGCAAAGGCCACCAAGCTGGAAAAGCCGTC				1q22	PREDICTED: Rattus norvegicus nitric oxide synthase interacting protein (predicted) (Nosip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653325-S	ILMN_263820	SMARCA4	XM_001073453.1	XM_001073453.1		171379	109484264	XM_001073453.1	Smarca4	XP_001073453.1	ILMN_1352184	0001570332	S	4972	AGGATGACAGTGAAGGCGAGGAAAGCGAGGAGGAAGAAGAGGGCGAGGAG				8q13	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 (Smarca4), mRNA.	A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation [goid 1832] [evidence ISS]; The hatching of the cellular blastocyst from the zona pellucida [goid 1835] [evidence ISS]; Repression of transcription by methylation of DNA, leading to the formation of heterochromatin [goid 6346] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 7403] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process by which the anatomical structures of the epidermis are generated and organized. Morphogenesis pertains to the creation of form. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 48730] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643971-S	ILMN_51428	LOC310587	XM_227369.3	XM_227369.3		310587	62643971	XM_227369.3	LOC310587	XP_227369.3	ILMN_1358971	0003130593	S	9075	ACTCAGTCAAATGGGAGATCTGGAACCCAATGGGAATCTGGTTGTAGCCC				2q34	PREDICTED: Rattus norvegicus similar to hornerin (predicted) (LOC310587), mRNA.					
Rattus norvegicus	RefSeq	GI_47577740-S	ILMN_263953	OLR125	NM_001000740.1	NM_001000740.1		405004	47577740	NM_001000740.1	Olr125	NP_001000740.1	ILMN_1364565	0002570300	S	601	GGACTAGTACTCATCACATTGCTGTGGGGCATGGACTCCCTGGGCATTTT	1	-	161506845-161506894	1q32	Rattus norvegicus olfactory receptor 125 (Olr125), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr125	Olr125
Rattus norvegicus	RefSeq	GI_56676343-A	ILMN_263976	RNASE9	NM_001008561.1	NM_001008561.1		364301	56676343	NM_001008561.1	Rnase9	NP_001008561.1	ILMN_1376413	0006860471	S	1187	ATCTGTGACTGTCTCTGGGGTGCCTATGGGGGTTTCTAGGGCTGGATGGC	15	-	27019257-27019306	15p14	Rattus norvegicus ribonuclease, RNase A family, 9 (non-active) (Rnase9), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577860-S	ILMN_284280	OLR1193	NM_001000594.1	NM_001000594.1		367032	47577860	NM_001000594.1	Olr1193	NP_001000594.1	ILMN_1365358	0002030113	S	800	CTTCTGAGAAAGGCATGGTGGCCTCAGTAATGTATACAATCATCACCCCC	8	-	19330681-19330730	8q13	Rattus norvegicus olfactory receptor 1193 (Olr1193), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1193	Olr1193
Rattus norvegicus	RefSeq	GI_62662102-S	ILMN_63852	LOC498567	XM_573842.1	XM_573842.1		498567	62662102	XM_573842.1	LOC498567	XP_573842.1	ILMN_1368367	0005910037	S	122	CACCAGTGTTGTGGTGACACCAACTGCCTGAGCCATTTCCCTTCATTTCC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC079195 (LOC498567), mRNA.					
Rattus norvegicus	RefSeq	GI_62659044-S	ILMN_264950	USP30_PREDICTED	XM_001080428.1	XM_001080428.1		304579	109497503	XM_001080428.1	Usp30_predicted	XP_001080428.1	ILMN_1355480	0006180441	S	3245	CCCAGCGAGAAGAGAGGTGGCCAAGAGGAAAGTGTGCAAGGCTGCTCAGT				12q16	PREDICTED: Rattus norvegicus ubiquitin specific protease 30 (predicted) (Usp30_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666778-S	ILMN_48829	LOC497844	XM_579655.1	XM_579655.1		497844	62666778	XM_579655.1	LOC497844	XP_579655.1	ILMN_1373825	0005720484	S	1080	GCTCTGTAGCGTGAACCTCACTGACACTTCAGACTAAAGCGGAGCCTAGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_138846 (LOC497844), mRNA.					
Rattus norvegicus	RefSeq	GI_62658704-S	ILMN_274321	CLDN15_PREDICTED	XM_001076934.1	XM_001076934.1		304388	109497165	XM_001076934.1	Cldn15_predicted	XP_001076934.1	ILMN_1360663	0001940270	S	500	AAGTATGAACTGGGCTCTGCCCTCTACTTGGGCTGGAGCGCCTCTCTGCT				12q12	PREDICTED: Rattus norvegicus claudin 15 (predicted) (Cldn15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577948-S	ILMN_282175	OLR1121	NM_001000516.1	NM_001000516.1		315452	47577948	NM_001000516.1	Olr1121	NP_001000516.1	ILMN_1369567	0007100215	S	872	GCTTGAGGAACAGAGACCTGAAGGGAGCCCTGAAGAAGATCATTAACCGA	8	-	16840447-16840496	8q13	Rattus norvegicus olfactory receptor 1121 (Olr1121), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1121	Olr1121
Rattus norvegicus	RefSeq	GI_62665190-S	ILMN_265601	DUS2L_PREDICTED	XM_001076110.1	XM_001076110.1		291978	109508820	XM_001076110.1	Dus2l_predicted	XP_001076110.1	ILMN_1356121	0005290022	S	1553	GGCTGCTGACTCCTGCTGTGGTTGACAGTGTGTGGGACTAATGTGAAGGG				19q12	PREDICTED: Rattus norvegicus dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) (predicted) (Dus2l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659358-S	ILMN_266579	ELF3	NM_001024768.1	NM_001024768.1		304815	67078485	NM_001024768.1	Elf3	NP_001019939.1	ILMN_1375076	0001690670	S	1593	GAGACTGTGGGAGGAGACTACAGGGACAGAGGGGACAGGATTGTGTTCTC	13	-	48259203-48259252	13q13	Rattus norvegicus E74-like factor 3 (Elf3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence ISS]; The tissue remodeling that removes differentiated mammary epithelia during weaning [goid 60056] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652244-S	ILMN_59375	RGD1563427_PREDICTED	XM_235209.4	XM_235209.4		299845	109480633	XM_235209.4	RGD1563427_predicted	XP_235209.4	ILMN_1373379	0004480121	S	1096	CACCTGGATGTGCACTGGAGCCTGGTGGTGACAGACCTAAGAGAGAAGAG	7	+	61674054-61674103	7q22	PREDICTED: Rattus norvegicus similar to sentrin 15 (predicted) (RGD1563427_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663205-S	ILMN_276091	RGD1562335_PREDICTED	XM_001069211.1	XM_001069211.1		498703	109505460	XM_001069211.1	RGD1562335_predicted	XP_001069211.1	ILMN_1375104	0003120497	S	2764	TCAGTGAGCCCTACCCAGGTTGACTTCTGCCGGTCACCTCAAGCCTCAGC				17p14	PREDICTED: Rattus norvegicus similar to mKIAA1931 protein (predicted) (RGD1562335_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242248-S	ILMN_299817	HIF1A	NM_024359.1	NM_024359.1		29560	13242248	NM_024359.1	Hif1a	NP_077335.1	ILMN_1355979	0003520315	S	2724	CGAATGCCAGATCACAGCACATTCACAGCTCCCCAGCATTTCACCAATGC	6	+	96462915-96462964	6q24	Rattus norvegicus hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) (Hif1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IEA]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence IEA]; The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared during or following an inflammatory response [goid 2248] [evidence ISS]; The chemical reactions and pathways involving lactate, the anion of lactic acid [goid 6089] [evidence ISS]; The chemical reactions and pathways involving lactate, the anion of lactic acid [goid 6089] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor [goid 10575] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epithelial cell migration [goid 10634] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus [goid 14850] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus [goid 14850] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence IEA]; A homeostatic process involved in the maintenance of an internal equilibrium of oxygen within an organism or cell [goid 32364] [evidence ISS]; A homeostatic process involved in the maintenance of an internal equilibrium of oxygen within an organism or cell [goid 32364] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence ISS]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence IEA]; The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 32963] [evidence ISS]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence ISS]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence IEA]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence ISS]; Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 43619] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism [goid 45926] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism [goid 45926] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones [goid 46886] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; Any process that modulates the activity of an enzyme [goid 50790] [evidence ISS]; Any process that modulates the activity of an enzyme [goid 50790] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; The chemical reactions and pathways involving elastin, a glycoprotein which is randomly coiled and cross linked to form elastic fibres that are found in connective tissue [goid 51541] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence TAS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IDA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence IEA]	MOP1	MOP1
Rattus norvegicus	RefSeq	GI_57114243-S	ILMN_267472	V1RJ2	NM_001008929.1	NM_001008929.1		494277	57114243	NM_001008929.1	V1rj2	NP_001008929.1	ILMN_1350013	0004010500	S	811	CTGGAGTCAGTAAATTCACTTTTGACAACATGCTACCCAACCATCTGCCC	1	+	73410553-73410602	1q21	Rattus norvegicus vomeronasal 1 receptor, J2 (V1rj2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57012441-S	ILMN_267169	KRT27	NM_001008824.1	NM_001008824.1		450229	57012441	NM_001008824.1	Krt27	NP_001008824.1	ILMN_1374245	0003800609	S	1242	CGTCGAAGAATTAGATCCCCGTGGCAAGGTTCTGTCCTCCCGAGTCCACA	10	-	88248619-88248668	10q32.1	Rattus norvegicus keratin 27 (Krt27), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21326466-S	ILMN_287134	TAS2R126	NM_139335.1	NM_139335.1		246219	21326466	NM_139335.1	Tas2r126	NP_647551.1	ILMN_1371489	0000870725	S	862	AATCTCAAGTTCCGAGGCACCTTCAGGCAGCTACTCCTGTTGGCCAGGGG	4	+	70216533-70216582	4q23	Rattus norvegicus taste receptor, type 2, member 126 (Tas2r126), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_34852946-S	ILMN_69229	LOC365068	XM_344804.1	XM_344804.1		365068	34852946	XM_344804.1	LOC365068	XP_344805.1	ILMN_1355720	0001340711	S	1403	CAGCCTGTCAACTATCAGTACCATAGCCTGTCAACTGTCAGTGCCACAGC					PREDICTED: Rattus norvegicus similar to putative protein (5I806) (LOC365068), mRNA.					
Rattus norvegicus	RefSeq	GI_52138592-S	ILMN_280228	GUCY1B3	NM_012769.2	NM_012769.2		25202	52138592	NM_012769.2	Gucy1b3	NP_036901.2	ILMN_1371639	0003060537	S	2808	TAGCTAGGACATTGCTATTAGAGCCCGCTTGGCCTAACTCCAGGCTTGAG	2	-	173683485-173683534	2q33	Rattus norvegicus guanylate cyclase 1, soluble, beta 3 (Gucy1b3), mRNA.	Complex that possesses guanylate cyclase activity and is not bound to a membrane [goid 8074] [evidence IDA]; Complex that possesses guanylate cyclase activity and is not bound to a membrane [goid 8074] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence IDA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence TAS]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with ions, charged atoms or groups of atoms [goid 43167] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence IDA]	Gucy1b1; MGC93604; SGC	Gucy1b1; MGC93604; SGC
Rattus norvegicus	RefSeq	GI_62658869-S	ILMN_52556	LOC304497	XM_222179.3	XM_222179.3		304497	62658869	XM_222179.3	LOC304497	XP_222179.3	ILMN_1364081	0002340671	S	3057	AAGATACCCTGCCTCTGTGGCTCCGAGAACTGCCGGGGGACCCTCAACTA					PREDICTED: Rattus norvegicus hypothetical LOC304497 (predicted) (LOC304497), mRNA.					
Rattus norvegicus	RefSeq	GI_62653048-S	ILMN_54367	SPATS2_PREDICTED	XM_217030.4	XM_217030.4		300221	109481268	XM_217030.4	Spats2_predicted	XP_217030.2	ILMN_1354990	0003850408	S	2566	ACGTGTTAGTTCCTGCAACAGAGAGCACGGGGAGCATCTGAGCCTGCCTC	7	+	137971677-137971726	7q36	PREDICTED: Rattus norvegicus spermatogenesis associated, serine-rich 2 (predicted) (Spats2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653046-S	ILMN_54367	SPATS2_PREDICTED	XM_217030.4	XM_217030.4		300221	109481268	XM_217030.4	Spats2_predicted	XP_217030.2	ILMN_1363304	0003390056	S	78	CGGAGGCTCTTCTTTCCTCATCCCAGACCGGGGAGCGTCCGGAACGCAGA	7	+	137898655-137898704	7q36	PREDICTED: Rattus norvegicus spermatogenesis associated, serine-rich 2 (predicted) (Spats2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981041	ILMN_57549	HP	NM_012582.2	NM_012582.2		24464	60097940	NM_012582.2	Hp	NP_036714.2	ILMN_1651184	0001240014	S	727	GTATGTCATGCTGCCTGTGGCTGACCAGGAGAAGTGTGAGCTGCACTATG	19	-	39443436-39443485	19q12	Rattus norvegicus haptoglobin (Hp), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IDA]; Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus [goid 32026] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalamin (vitamin B12) stimulus [goid 33590] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus [goid 33591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 30492] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 30492] [evidence IEA]	Ba1-647	Ba1-647
Rattus norvegicus	RefSeq	GI_62653420	ILMN_283711	RUP2	NM_001034950.1	NM_001034950.1		619560	77917595	NM_001034950.1	Rup2	NP_001030122.1	ILMN_1649755	0006110497	S	1032	GTGAGTTGTCCAGACATGGTCAGTAGATTATTCTTTCTGGCATGCTCCAG	8	+	37242676-37242725	8q21	Rattus norvegicus urinary protein 2 (Rup2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62645227-S	ILMN_285362	DLX1	XM_001059233.1	XM_001059233.1		296500	109470039	XM_001059233.1	Dlx1	XP_001059233.1	ILMN_1366467	0004210142	S	2766	GCTCGACCACAGAACACAAGTCATCACCCTGAACGCACAGCCTCTGGTGC				3q21	PREDICTED: Rattus norvegicus distal-less homeobox 1 (Dlx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain [goid 21882] [evidence ISS]; The process whereby the developmental fate of a neuroblast becomes restricted such that it will develop into a GABAergic interneuron residing in the cerebral cortex [goid 21893] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665789-I	ILMN_66171	TSGA2_PREDICTED	XM_574726.1	XM_574726.1		361818	62665789	XM_574726.1	Tsga2_predicted	XP_574726.1	ILMN_1375940	0007100184	S	57	GTCCCCAAGGCGGACCTTACTAATGCCAGCGAAATGGACAAGTTCCGGGC				20p12	PREDICTED: Rattus norvegicus testis specific gene A2 (predicted) (Tsga2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642794-S	ILMN_61503	RGD1563891_PREDICTED	XM_226703.4	XM_226703.4		310011	109464280	XM_226703.4	RGD1563891_predicted	XP_226703.4	ILMN_1365644	0006450494	S	1333	CCGGGAGGAATTTCCAGATCGTCCCAGGATGTGTCTGACCTGCAGAGTAA	2	+	27440652-27440701	2q12	PREDICTED: Rattus norvegicus similar to core 2 beta-1,6-N-acetylglucosaminyltransferase 3 (predicted) (RGD1563891_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58037553-S	ILMN_281787	H2AFY	NM_017182.2	NM_017182.2		29384	58037553	NM_017182.2	H2afy	NP_058878.1	ILMN_1372557	0002850341	S	1664	CCCGTTTGTAACGCGTGTTGTGGTGCTTTACTGTACACCCAGTGGCGTTC	17	+	14520786-14520835	17p14	Rattus norvegicus H2A histone family, member Y (H2afy), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IDA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence IEA]; A structure found in a female mammalian cell containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery [goid 1740] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	Compensating for the two-fold variation in X:autosome chromosome ratios between sexes by a global activation or inactivation of all, or most of, genes on one or both of the X chromosomes [goid 7549] [evidence ISS]; The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC105515	MGC105515
Rattus norvegicus	RefSeq	GI_62656863-S	ILMN_50915	ITGA3_PREDICTED	XM_340884.2	XM_340884.2		360606	62656863	XM_340884.2	Itga3_predicted	XP_340885.2	ILMN_1357804	0003940471	S	3973	AGGCTGAGATGAGGAGCCAGCCATCAGAGACAGAAAGGCTGACCGACGAC				10q31	PREDICTED: Rattus norvegicus integrin alpha 3 (predicted) (Itga3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31343451-S	ILMN_277025	PPM1F	NM_175755.2	NM_175755.2		287931	31343451	NM_175755.2	Ppm1f	NP_786931.1	ILMN_1371449	0007050048	S	1873	GCTGGCTTCCCAAAGAAGTTGACATTGGTCTTGCTGGGAGGAGCACCAGG	11	-	86086980-86087029	11q23	Rattus norvegicus protein phosphatase 1F (PP2C domain containing) (Ppm1f), mRNA.	A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence TAS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence TAS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	CaMKPase	CaMKPase
Rattus norvegicus	RefSeq	GI_62645848-S	ILMN_269847	RGD1561442_PREDICTED	XM_001081131.1	XM_001081131.1		311416	109470802	XM_001081131.1	RGD1561442_predicted	XP_001081131.1	ILMN_1350449	0003290341	S	4100	AAGAGCTCCTTGTAGACAATGCACAGCGGCTCCTCCAGGCTGTCTCCGAG				3q36	PREDICTED: Rattus norvegicus similar to Vinculin (Metavinculin) (predicted) (RGD1561442_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507068-S	ILMN_273899	CCL20	NM_019233.1	NM_019233.1		29538	9507068	NM_019233.1	Ccl20	NP_062106.1	ILMN_1365213	0006900528	S	246	TCACCTGAAGTCGAAAAGATCCGTGTGCGCTGACCCAAAGCAGATCTGGG	9	+	82442398-82442447	9q34	Rattus norvegicus chemokine (C-C motif) ligand 20 (Ccl20), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A response by a motile cell to a soluble chemical that involves an increase or decrease in speed (positive or negative orthokinesis) or of frequency of movement or a change in the frequency or magnitude of turning behavior (klinokinesis) [goid 42466] [evidence IDA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IDA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scya20; ST38	Scya20; ST38
Rattus norvegicus	RefSeq	GI_62649955-S	ILMN_55931	LOC298582	XM_233593.3	XM_233593.3		298582	62649955	XM_233593.3	LOC298582	XP_233593.3	ILMN_1355244	0006130368	S	446	CCTCACCTTTGACCATTCTGCTCTAAACCTGCTTGTGGGGCCTCTGGAGC				5q36	PREDICTED: Rattus norvegicus similar to ribosomal protein S16 (LOC298582), mRNA.					
Rattus norvegicus	RefSeq	GI_62658572-S	ILMN_57692	LOC498161	XM_573376.1	XM_573376.1		498161	62658572	XM_573376.1	LOC498161	XP_573376.1	ILMN_1365594	0004480048	S	1548	GCTCTGGGAACAGAAGGAAGCTTGGGGACCAGTCACCCCCTTTTGGGAAG					PREDICTED: Rattus norvegicus similar to zinc finger protein 113 (LOC498161), mRNA.					
Rattus norvegicus	RefSeq	GI_62663580-S	ILMN_57618	LOC498753	XM_574032.1	XM_574032.1		498753	62663580	XM_574032.1	LOC498753	XP_574032.1	ILMN_1363115	0004280128	S	524	CCGCATCCGCGGGGAGAGGGCGTAATGGTTTTTATGTTATTACCCAAAGG				17p11	PREDICTED: Rattus norvegicus similar to HIST1H3I protein (LOC498753), mRNA.					
Rattus norvegicus	RefSeq	GI_62665388-S	ILMN_69199	LOC292073	XM_226546.3	XM_226546.3		292073	62665388	XM_226546.3	LOC292073	XP_226546.3	ILMN_1358966	0002260711	S	2243	GCTCCACATAACCTCCTCATCCTATCTCTGAAGGCTCGTGGGAGCTGTCC				19q12	PREDICTED: Rattus norvegicus similar to Galactosamine (N-acetyl)-6-sulfate sulfatase (LOC292073), mRNA.					
Rattus norvegicus	RefSeq	GI_34933284	ILMN_265605	RGD1563161_PREDICTED	XM_346272.1	XM_346272.1		367735	34933284	XM_346272.1	RGD1563161_predicted	XP_346273.1	ILMN_1649872	0003390551	S	300	TGAGATATTTCTGGCCCTGCAAAACCAGCGCGGCGGTCGCATCTCTCTCC	X	+	25894223-25894272	Xq13	PREDICTED: Rattus norvegicus similar to ferritin heavy chain - chicken (predicted) (RGD1563161_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393095-S	ILMN_292442	CEL	NM_016997.1	NM_016997.1		24254	8393095	NM_016997.1	Cel	NP_058693.1	ILMN_1356039	0006650520	S	1826	GGCTCAGATGCCTGGTCCCATTGGCTTCTAAAGTCCTATAAACCGGGGCT	3	-	7541306-7541325:7541326-7541355	3p12	Rattus norvegicus carboxyl ester lipase (Cel), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach [goid 30157] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid [goid 46514] [evidence ISS]	Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IDA]; Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion [goid 4104] [evidence IEA]; Catalysis of the reaction: a steryl ester + H2O = a sterol + a fatty acid [goid 4771] [evidence IDA]; Catalysis of the reaction: a steryl ester + H2O = a sterol + a fatty acid [goid 4771] [evidence ISS]; Catalysis of the reaction: a steryl ester + H2O = a sterol + a fatty acid [goid 4771] [evidence IEA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol [goid 47372] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_46559781-S	ILMN_268216	CALM3	NM_012518.2	NM_012518.2		24244	46559781	NM_012518.2	Calm3	NP_036650.1	ILMN_1374160	0004730711	S	872	GAGGGAGGGACAGAGCTTATCAGGAGACCCAGCCTAGAGTTGAGGGCAAG	1	-	77244358-77244407	1q21	Rattus norvegicus calmodulin 3 (Calm3), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells [goid 32465] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence IEA]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence ISS]	RNCAMIII	RNCAMIII
Rattus norvegicus	RefSeq	GI_34851707-S	ILMN_264515	THAP11_PREDICTED	XM_001075955.1	XM_001075955.1		307806	109508806	XM_001075955.1	Thap11_predicted	XP_001075955.1	ILMN_1351843	0006770066	S	1094	ATGAAGGGTAGCATCCGCCATCTGCGTCTTACCGAGGCCAAGCTCCGTGA				19q12	PREDICTED: Rattus norvegicus THAP domain containing 11 (predicted) (Thap11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929037-S	ILMN_291581	SLC29A2	NM_031738.1	NM_031738.1		65194	13929037	NM_031738.1	Slc29a2	NP_113926.1	ILMN_1356083	0002650717	S	1598	TGCTATACCGGGTCTCTTGGTCTGTGGGTGCCAGGAGGGGGCAGAAACTA	1	+	207650280-207650329	1q43	Rattus norvegicus solute carrier family 29 (nucleoside transporters), member 2 (Slc29a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence IDA]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence IEA]; The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells [goid 15858] [evidence ISS]	Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IDA]; Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence IEA]; Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other [goid 5337] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657772-S	ILMN_70226	COL8A1_PREDICTED	XM_221536.4	XM_221536.4		304021	109493044	XM_221536.4	Col8a1_predicted	XP_221536.4	ILMN_1362033	0006770053	S	2327	CGGAGACCGGGTGTTCCTCCAAATGCCTTCAGAACAGGCTGCTGGACTCT	11	+	43733765-43733814	11q12	PREDICTED: Rattus norvegicus procollagen, type VIII, alpha 1 (predicted) (Col8a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11276090-S	ILMN_262860	DYNC1I1	NM_019234.1	NM_019234.1		29564	11276090	NM_019234.1	Dync1i1	NP_062107.1	ILMN_1357767	0006380059	S	2447	GCCAGATATGATTGGGTGCAGATGTGGCGTGCCTCGTGATACGGTGCAGG	4	+	30809425-30809474	4q13	Rattus norvegicus dynein cytoplasmic 1 intermediate chain 1 (Dync1i1), mRNA.	Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence IDA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [pmid 14985359] [evidence IDA]	The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [pmid 14985359] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [pmid 14985359] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 14985359] [evidence IPI]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [pmid 14985359] [evidence IDA]	Dncic1; Dnci1	Dncic1; Dnci1
Rattus norvegicus	RefSeq	GI_62646235-S	ILMN_265347	LOC311578	XM_001067659.1	XM_001067659.1		311578	109471190	XM_001067659.1	LOC311578	XP_001067659.1	ILMN_1370778	0002630605	S	4238	GCATGTCTGAGGCCCGAACCAAGCCTGAGCCTCCCAAGTATGGCATTGTT				3q42	PREDICTED: Rattus norvegicus hypothetical protein LOC311578 (LOC311578), mRNA.			Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654837-S	ILMN_54548	LOC301334	XM_237049.3	XM_237049.3		301334	62654837	XM_237049.3	LOC301334	XP_237049.3	ILMN_1360647	0000540408	S	6799	ACGGAGGCGGAGGCGGGAAGTGGAGCCTCTGGTTTGTTGCACTTACCTCA				9q21	PREDICTED: Rattus norvegicus similar to Rho guanine nucleotide exchange factor 4 (APC-stimulated guanine nucleotide exchange factor) (Asef) (LOC301334), mRNA.					
Rattus norvegicus	RefSeq	GI_62642008-S	ILMN_69574	LOC293822	XM_219677.3	XM_219677.3		293822	62642008	XM_219677.3	LOC293822	XP_219677.3	ILMN_1373121	0001340131	S	8708	CCACATTCCAGAGAGCATCATCAAGTGTCATCCTAAGCCCAATGGCTCAC					PREDICTED: Rattus norvegicus similar to hypothetical protein BC019095 (predicted) (LOC293822), mRNA.					
Rattus norvegicus	RefSeq	GI_62642934-S	ILMN_68700	LOC499529	XM_574853.1	XM_574853.1		499529	62642934	XM_574853.1	LOC499529	XP_574853.1	ILMN_1364815	0003140082	S	985	GTGCGTGGGCTTAGGTACATCCCCGGTCCACGGTGCTAACAAAATGGTTC				2q14	PREDICTED: Rattus norvegicus similar to NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) (LOC499529), mRNA.					
Rattus norvegicus	RefSeq	GI_62648131-S	ILMN_262645	RGD1561715_PREDICTED	XR_007960.1	XR_007960.1		500313	109474185	XR_007960.1	RGD1561715_predicted		ILMN_1373032	0006760390	S	2116	GGCTCGAGAGCCACAGAAGGAGAGGGAAATTTGAGGGCATCTTGTCATGG				4q42	PREDICTED: Rattus norvegicus similar to complement component 1, s subcomponent (predicted) (RGD1561715_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661910-S	ILMN_67875	LOC290157	XM_224117.2	XM_224117.2		290157	62661910	XM_224117.2	LOC290157	XP_224117.2	ILMN_1355393	0006110039	S	122	CAGCAACAGTGCTTCTCAGTCCTTCTGGTGGTACCAACAACATCTCGGGA					PREDICTED: Rattus norvegicus similar to TRAV7-6 (LOC290157), mRNA.					
Rattus norvegicus	RefSeq	GI_62717940-S	ILMN_56654	LOC301858	XM_229338.3	XM_229338.3		301858	62717940	XM_229338.3	LOC301858	XP_229338.3	ILMN_1372493	0004570102	S	1082	GGGGGGAAGACAGAAGGAGAAATGTGAAGCATGGGTACAGACTTTTAGAG					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC301858), mRNA.					
Rattus norvegicus	RefSeq	GI_62662148-S	ILMN_283515	SLMAP_PREDICTED	XM_001057214.1	XM_001057214.1		290533	109503686	XM_001057214.1	Slmap_predicted	XP_001057214.1	ILMN_1359548	0006590139	S	3328	GCAGTGTGAAGTCCAGCAAAGAGAGGAGGCCACAAGGTTGCAAGGTGAAC				16p16	PREDICTED: Rattus norvegicus sarcolemma associated protein (predicted) (Slmap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556822-S	ILMN_270929	RBM17	NM_001013058.1	NM_001013058.1		291295	61556822	NM_001013058.1	Rbm17	NP_001013076.1	ILMN_1358042	0002120440	S	1361	GTCACCTCCTTGATCCTTACACGAGCTGCAGACTGAGCAATGGCACAGGC	17	+	78156638-78156687	17q12.3	Rattus norvegicus RNA binding motif protein 17 (Rbm17), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928953-S	ILMN_273008	SNCG	NM_031688.1	NM_031688.1		64347	13928953	NM_031688.1	Sncg	NP_113876.1	ILMN_1357880	0007040433	S	525	GCCCACATTCTCCACTCCCTAGCCCAATGCACAAGCCTATCCAAGCACGC	16	-	10026110-10026159	16p16	Rattus norvegicus synuclein, gamma (breast cancer-specific protein 1) (Sncg), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence NAS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62648129-S	ILMN_262492	LOC297590	XM_001061743.1	XM_001061743.1		297590	109474183	XM_001061743.1	LOC297590	XP_001061743.1	ILMN_1368160	0002850390	S	2059	GCCATCAAACCAGGAAGTGCCTTAAAAATGTCGATGGTGATCCGACTCTC				4q42	PREDICTED: Rattus norvegicus putative pheromone receptor V2R1 (LOC297590), mRNA.					
Rattus norvegicus	RefSeq	GI_8394421-S	ILMN_278817	TBXA2R	NM_017054.1	NM_017054.1		24816	8394421	NM_017054.1	Tbxa2r	NP_058750.1	ILMN_1369173	0007040750	S	1560	TCCCTGGCCCCCTCCCCAGACTACTTGTCAGCTAGGAGGTTGGAGCATAT	7	-	9868022-9868071	7q11	Rattus norvegicus thromboxane A2 receptor (Tbxa2r), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence IEA]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence ISS]; A series of molecular signals in which an ion or small molecule is formed or released into the cytosol, thereby helping relay the signal within the cell [goid 19932] [evidence IEA]; A series of molecular signals in which an ion or small molecule is formed or released into the cytosol, thereby helping relay the signal within the cell [goid 19932] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of water within an organism or cell [goid 30104] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases angiogenesis [goid 45766] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a thromboxane (TXA) to initiate a change in cell activity [goid 4960] [evidence IDA]; Combining with a thromboxane (TXA) to initiate a change in cell activity [goid 4960] [evidence IEA]; Combining with a thromboxane (TXA) to initiate a change in cell activity [goid 4960] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639470-S	ILMN_56735	LOC502321	XM_577786.1	XM_577786.1		502321	62639470	XM_577786.1	LOC502321	XP_577786.1	ILMN_1350704	0006650685	S	545	TCCCCAGGGCCTACACAGCAGAAGGACACCAAACGCCAAGCGGTTAGACA					PREDICTED: Rattus norvegicus similar to hypothetical protein D930020E02 (LOC502321), mRNA.					
Rattus norvegicus	RefSeq	GI_11177895-S	ILMN_276688	CRX	NM_021855.1	NM_021855.1		60446	11177895	NM_021855.1	Crx	NP_068627.1	ILMN_1365544	0007100092	S	810	GGACCCTACAGGCACCTGGAAATTCACCTACAATCCCATGGACCCTCTGG	1	-	76190696-76190745	1q21	Rattus norvegicus cone-rod homeobox (Crx), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of photoreceptor cell differentiation [goid 46534] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643338-S	ILMN_65919	LOC361929	XM_342228.3	XM_342228.3		361929	109464746	XM_342228.3	LOC361929	XP_342229.3	ILMN_1360785	0004480671	S	4223	CTCATGCTGTAACACCACCACTGAAGCTGATCCTACAAGTGCAAAGGGAG	2	+	122305822-122305871	2q25	PREDICTED: Rattus norvegicus similar to Potential phospholipid-transporting ATPase IF (ATPase class I type 11B) (ATPase IR) (LOC361929), mRNA.					
Rattus norvegicus	RefSeq	GI_51871606-S	ILMN_267747	GJB2	NM_001004099.1	NM_001004099.1		394266	51871606	NM_001004099.1	Gjb2	NP_001004099.1	ILMN_1355811	0006380050	S	2195	GTCCACAAGATGACAGTCAACAAATCCAACAGGGGACACTTCTTCCTGCC	15	-	36153702-36153751	15p12	Rattus norvegicus gap junction protein, beta 2 (Gjb2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence TAS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence TAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence IEP]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence TAS]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	CXN-26; Cx26; MGC93804	CXN-26; Cx26; MGC93804
Rattus norvegicus	RefSeq	GI_13928705-S	ILMN_284523	NCAM1	NM_031521.1	NM_031521.1		24586	13928705	NM_031521.1	Ncam1	NP_113709.1	ILMN_1370085	0000610039	S	2653	GACAGAGCCCGAGAAGGGTCCTGTAGAAACAAAGTCCGAGCCCCAGGAGT	8	-	52822824-52822861:52825854-52825865	8q23	Rattus norvegicus neural cell adhesion molecule 1 (Ncam1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence TAS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction [goid 16338] [evidence TAS]; The attachment of a cell to a second cell of the identical type via adhesion molecules [goid 34109] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]	Interacting selectively with the fibroblast growth factor receptor (FGFR) [goid 5104] [evidence TAS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence TAS]; Interacting selectively with any phosphatase [goid 19902] [evidence IPI]; Interacting selectively with a LRR domain (leucine rich repeats) of a protein [goid 30275] [evidence IPI]	Cd56; NCAM-C; N-CAM; MGC124601; Ncam	Cd56; NCAM-C; N-CAM; MGC124601; Ncam
Rattus norvegicus	RefSeq	GI_62653923-I	ILMN_54196	FBXO9_PREDICTED	XM_576433.1	XM_576433.1		300849	62653923	XM_576433.1	Fbxo9_predicted	XP_576433.1	ILMN_1375944	0004610100	S	1320	GGTACTGGGGGTGACCTGCACGGTGTGTTAGGTAATTTGCAGTGCGACTC				8q31	PREDICTED: Rattus norvegicus f-box only protein 9 (predicted) (Fbxo9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661782-S	ILMN_61014	LOC498554	XM_573830.1	XM_573830.1		498554	62661782	XM_573830.1	LOC498554	XP_573830.1	ILMN_1356664	0006590736	S	254	TGGAGGGGCTGCTTTGAGAGAAAAATGGTCTGAGGAAGTTAAGGGATGGC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC498554), mRNA.					
Rattus norvegicus	RefSeq	GI_51036644-S	ILMN_294115	GCLM	NM_017305.2	NM_017305.2		29739	51036644	NM_017305.2	Gclm	NP_059001.1	ILMN_1374114	0000580687	S	1080	GGTGGTTTGGCAATGTGTTGAGTTTGAGTACCTCCCTGGCGTCTGCAGCA	2	+	218915083-218915132	2q41	Rattus norvegicus glutamate cysteine ligase, modifier subunit (Gclm), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine [goid 17109] [evidence IDA]; An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine [goid 17109] [evidence IEA]	The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid [goid 6534] [evidence IEA]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence IMP]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process that activates or increases the activity of glutamate-cysteine ligase, typically by lowering its sensitivity to inhibition by glutathione and by increasing its affinity for glutamate [goid 35229] [evidence IDA]; Any process that activates or increases the activity of glutamate-cysteine ligase, typically by lowering its sensitivity to inhibition by glutathione and by increasing its affinity for glutamate [goid 35229] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that modulates the size of blood vessels [goid 50880] [evidence ISS]; Any process that modulates the size of blood vessels [goid 50880] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions [goid 51409] [evidence IMP]; Any process that modulates the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive [goid 51900] [evidence IEA]; The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid [goid 6536] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence ISS]	Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence IDA]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence IMP]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence ISS]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with the catalytic subunit of glutamate-cysteine ligase [goid 35226] [evidence IDA]; Interacting selectively with the catalytic subunit of glutamate-cysteine ligase [goid 35226] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamate + L-cysteine = ADP + phosphate + gamma-L-glutamyl-L-cysteine [goid 4357] [evidence ISS]	Glclr	Glclr
Rattus norvegicus	RefSeq	GI_62660908-S	ILMN_61818	LOC501929	XM_577355.1	XM_577355.1		501929	62660908	XM_577355.1	LOC501929	XP_577355.1	ILMN_1367095	0003990711	S	512	CAGCCAGTGCAAGAAGGGGGCTAGACGATTTGATGGGCCTCTTTGGTTCG					PREDICTED: Rattus norvegicus similar to nuclear pore membrane glycoprotein 121 (LOC501929), mRNA.					
Rattus norvegicus	RefSeq	GI_62646036-S	ILMN_291340	RGD1562246_PREDICTED	XM_001057757.1	XM_001057757.1		499914	109471017	XM_001057757.1	RGD1562246_predicted	XP_001057757.1	ILMN_1373415	0002190451	S	658	GCCTCGGTGGAAGTGTGAGCAGTTAATCAGACAAGGAGTTCTGGAGCACG				3q41	PREDICTED: Rattus norvegicus similar to Hypothetical UPF0080 protein KIAA0186 (predicted) (RGD1562246_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34879368-S	ILMN_62254	LOC364215	XM_344272.1	XM_344272.1		364215	34879368	XM_344272.1	LOC364215	XP_344273.1	ILMN_1349977	0001990161	S	444	GAATTCGTGTCAGTCACAGCCCTAGACGCTCAGTGGAGGTTCAGGTCACC				14q22	PREDICTED: Rattus norvegicus similar to ORF (LOC364215), mRNA.					
Rattus norvegicus	RefSeq	GI_62661767	ILMN_266214	RGD1560705_PREDICTED	XM_001073620.1	XM_001073620.1		498550	109502770	XM_001073620.1	RGD1560705_predicted	XP_001073620.1	ILMN_1650260	0002470601	S	382	GCCGGCCTGACTGCTGCAGGGATTGCAAAGAAAGCAAGAAGGCTGAGGAT				15q12	PREDICTED: Rattus norvegicus similar to LRRGT00152 (predicted) (RGD1560705_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542803-S	ILMN_266670	FCGR3	XM_001077008.1	XM_001077008.1		116591	109499013	XM_001077008.1	Fcgr3	XP_001077008.1	ILMN_1367877	0007100408	S	138	CGGCTGGAAGAGCATACAGCTGGCCAGGATTTCATTCCTCCAGAATGGAG				13q24	PREDICTED: Rattus norvegicus Fc receptor, IgG, low affinity III (Fcgr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Cytolysis of target cells by natural killer cells, eosinophils, neutrophils, monocytes, or macrophages following engagement of antibodies bound to the target cells by Fc receptors on the effector cells [goid 1788] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of type IIa hypersensitivity, a type of inflammatory response [goid 1798] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of type III hypersensitivity, a type of inflammatory response [goid 1805] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of type I hypersensitivity, a type of inflammatory response [goid 1812] [evidence ISS]; The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells [goid 1820] [evidence ISS]; The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence ISS]; The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis [goid 6911] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules [goid 42590] [evidence ISS]; The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]	Combining with an immunoglobulin of an IgG isotype via the Fc region to initiate a change in cell activity [goid 19770] [evidence IDA]; Combining with an immunoglobulin of an IgG isotype via the Fc region to initiate a change in cell activity [goid 19770] [evidence ISS]; Interacting selectively with an immunoglobulin of an IgG isotype [goid 19864] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an immunoglobulin of an IgG isotype [goid 19864] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47606350-S	ILMN_283792	OLR80	NM_001001270.1	NM_001001270.1		293223	47606350	NM_001001270.1	Olr80	NP_001001270.1	ILMN_1350243	0004670204	S	195	GGCTATGTTGGCTGCCATTGATTTGGGTCTCTCAACAGCAACCATCCCCA	1	-	160912328-160912377	1q32	Rattus norvegicus olfactory receptor 80 (Olr80), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr80	Olr80
Rattus norvegicus	RefSeq	GI_62647384-S	ILMN_64443	LOC500161	XM_575513.1	XM_575513.1		500161	62647384	XM_575513.1	LOC500161	XP_575513.1	ILMN_1368457	0000430026	S	58	GGCTTATAGGTGCCAGATGCGACATCCAGATGACCCAGTCTCCATCTTCC					PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC500161), mRNA.					
Rattus norvegicus	RefSeq	GI_62653539-S	ILMN_288282	RGD1309108_PREDICTED	XM_001064888.1	XM_001064888.1		315578	109484551	XM_001064888.1	RGD1309108_predicted	XP_001064888.1	ILMN_1364647	0001980039	S	310	GACGTGAAGCTTGGAGGCCTGGGACCTGACTTTGCGTCCATCAGAGACAA				8q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23554 (predicted) (RGD1309108_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981597-S	ILMN_283892	STS	NM_012661.1	NM_012661.1		24800	6981597	NM_012661.1	Sts	NP_036793.1	ILMN_1368549	0001740292	S	2125	CCGTGCACACGTTGCTACCCTAGAGGAGGCGCCCAATCAGCTTTCCATGT	X	+	63923500-63923549	Xq22	Rattus norvegicus steroid sulfatase (Sts), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]	Catalysis of the reaction: 3-beta-hydroxyandrost-5-en-17-one 3-sulfate + H2O = 3-beta-hydroxyandrost-5-en-17-one + SO4(2-) (sulfate) [goid 4773] [evidence IEA]; Catalysis of the reaction: 3-beta-hydroxyandrost-5-en-17-one 3-sulfate + H2O = 3-beta-hydroxyandrost-5-en-17-one + SO4(2-) (sulfate) [goid 4773] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652863-S	ILMN_273477	PARVB_PREDICTED	XM_001078155.1	XM_001078155.1		362973	109482587	XM_001078155.1	Parvb_predicted	XP_001078155.1	ILMN_1363771	0000630129	S	1739	AAGGGCATGTCTGGGTCTCTTGCTGGCTCTGAACATGCAGCTTGAGCCGG				7q34	PREDICTED: Rattus norvegicus parvin, beta (predicted) (Parvb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646747-S	ILMN_281839	RGD1560517_PREDICTED	XR_008223.1	XR_008223.1		362311	109473019	XR_008223.1	RGD1560517_predicted		ILMN_1349807	0000130494	S	110	ATGGACCCAGCGCTACTGCCCCAGCACTTAATGATGCAAGATTGGCATGA				4q12	PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (predicted) (RGD1560517_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646712-S	ILMN_281839	RGD1560517_PREDICTED	XR_008223.1	XR_008223.1		362311	109473019	XR_008223.1	RGD1560517_predicted		ILMN_1364601	0004480369	S	738	AGTCTTTCTTCAACACACGCCTCCAAAACTCAATGCCCAGCCAAATGTGC				4q12	PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (predicted) (RGD1560517_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651132-S	ILMN_48713	CHES1_PREDICTED	XM_234377.3	XM_234377.3		314374	62651132	XM_234377.3	Ches1_predicted	XP_234377.3	ILMN_1353255	0001780059	S	5216	TCAATGTGTATGTGGCTGTTTGTAGCGAAGTCTGCCGAATGAGGCGGCCC				6q32	PREDICTED: Rattus norvegicus checkpoint suppressor 1 (predicted) (Ches1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643833-S	ILMN_265018	LOC499658	XM_001057607.1	XM_001057607.1		499658	109467125	XM_001057607.1	LOC499658	XP_001057607.1	ILMN_1352766	0005420132	S	1029	AAGACATGGCCTCACTTCAAGCACTGAAAAAGACCCCAGTGCCATCTAAG				2q34	PREDICTED: Rattus norvegicus similar to peptidoglycan recognition protein 3 (LOC499658), mRNA.					
Rattus norvegicus	RefSeq	GI_47576562-S	ILMN_301937	OLR86	NM_001000747.1	NM_001000747.1		405014	47576562	NM_001000747.1	Olr86	NP_001000747.1	ILMN_1359130	0002630537	S	679	TTCCGCCTACCTTCCAGGGATGCTCGACTAAAGGCTCTCAGCACCTGTGG	1	+	161008128-161008177	1q32	Rattus norvegicus olfactory receptor 86 (Olr86), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr86	Olr86
Rattus norvegicus	RefSeq	GI_62641369-S	ILMN_283734	INPP5F_PREDICTED	XM_001080439.1	XM_001080439.1		309008	109462955	XM_001080439.1	Inpp5f_predicted	XP_001080439.1	ILMN_1367098	0006290446	S	3370	GTGACAGGCCCACAGTTGTTATCAGTTGAACCAGCACATCCAGCGGTATC				1q36-q37	PREDICTED: Rattus norvegicus inositol polyphosphate-5-phosphatase F (predicted) (Inpp5f_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078856-S	ILMN_302841	RGD1306195	NM_001014062.1	NM_001014062.1		313163	62078856	NM_001014062.1	RGD1306195	NP_001014084.1	ILMN_1367840	0000670397	S	836	GGAAGGCATCGCAAGCCTAGGGGGACAGGAAAATGAGCTATAACATCAGC	5	+	56706640-56706689	5q22	Rattus norvegicus similar to RAN protein (RGD1306195), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with thiamin pyrophosphate, the diphosphoric ester of thiamin. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases [goid 30976] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653126	ILMN_269082	PCBP2	NM_001013223.1	NM_001013223.1		363005	61557336	NM_001013223.1	Pcbp2	NP_001013241.1	ILMN_1650052	0003780546	S	821	TACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCAT	7	+	141246212-141246225:141246948-141246983	7q36	Rattus norvegicus poly(rC) binding protein 2 (Pcbp2), mRNA.			Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651703-S	ILMN_55196	RGD1304737_PREDICTED	XM_234923.4	XM_234923.4		314639	109480164	XM_234923.4	RGD1304737_predicted	XP_234923.4	ILMN_1357873	0002690390	S	2776	GTGGGTCACAGAATGAGTGTAGAGGAGCAGAGGGTGCAGAATGGGATTCC	7	-	9950878-9950927	7q11	PREDICTED: Rattus norvegicus similar to KIAA1086 protein (predicted) (RGD1304737_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651705-S	ILMN_55196	RGD1304737_PREDICTED	XM_234923.4	XM_234923.4		314639	109480164	XM_234923.4	RGD1304737_predicted	XP_234923.4	ILMN_1366320	0006620563	S	1109	GCAGCTTCAATGATAGGAATGCCAGAGACATGCACCTGACGGGACGCCGG	7	-	9957627-9957676	7q11	PREDICTED: Rattus norvegicus similar to KIAA1086 protein (predicted) (RGD1304737_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639130-S	ILMN_297731	ZFP94	NM_001037212.1	NM_001037212.1		499095	81295396	NM_001037212.1	Zfp94	NP_001032289.1	ILMN_1358117	0000360398	S	1583	CCTCCTGATTCACCAGCGAGTCCATGCTGAGGACGAGGGACGCAGAGATT	1	-	79520426-79520475	1q21	Rattus norvegicus zinc finger protein 94 (Zfp94), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC114501	MGC114501
Rattus norvegicus	RefSeq	GI_47576776-S	ILMN_265534	OLR184	NM_001000182.1	NM_001000182.1		293329	47576776	NM_001000182.1	Olr184	NP_001000182.1	ILMN_1363221	0002260497	S	871	GCCCTTAATCCTCTGATTTATGGGGTAAGGACCAAACAAATTCGAGAGAG	1	-	162793810-162793859	1q33	Rattus norvegicus olfactory receptor 184 (Olr184), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162890207-162889254_ORF; Olr184	ratchr1-162890207-162889254_ORF; Olr184
Rattus norvegicus	RefSeq	GI_55926184-S	ILMN_273597	GNB3	NM_021858.2	NM_021858.2		60449	55926184	NM_021858.2	Gnb3	NP_068630.1	ILMN_1353416	0004070670	S	1282	TGGGAGTAGCAGGGACACAAGGGCAAAGAACTGCCCCATTTCCTCCAGGG	4	-	160957750-160957799	4q42	Rattus norvegicus guanine nucleotide binding protein (G protein), beta polypeptide 3 (Gnb3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]	MGC105437	MGC105437
Rattus norvegicus	RefSeq	GI_25742688-S	ILMN_269918	P2RY14	NM_133577.1	NM_133577.1		171108	25742688	NM_133577.1	P2ry14	NP_598261.1	ILMN_1350851	0003290164	S	1451	AGAAATCGAATGGAGAAGTGGCATGTGGGTGCTAGTCTGCGAGTTACCCC	2	-	148502116-148502165	2q31	Rattus norvegicus purinergic receptor P2Y, G-protein coupled, 14 (P2ry14), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IMP]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence NAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence NAS]	Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	Gpr105; MGC93098	Gpr105; MGC93098
Rattus norvegicus	RefSeq	GI_34851635-S	ILMN_298890	PSMB10	NM_001025637.1	NM_001025637.1		291983	71043723	NM_001025637.1	Psmb10	NP_001020808.1	ILMN_1358888	0004060671	S	882	AGCTCTGACCCTGGAACTTCTGGAGGAAACTGTGCAGGCTATGGAGGTGG	19	-	35777777-35777826	19q12	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 10 (Psmb10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC112890	MGC112890
Rattus norvegicus	RefSeq	GI_27659051-S	ILMN_298890	PSMB10	NM_001025637.1	NM_001025637.1		291983	71043723	NM_001025637.1	Psmb10	NP_001020808.1	ILMN_2040046	0005360491	S	595	CTGCCTTTTACTGCCCTTGGCTCTGGTCAGGATGCAGCCGTGGCACTGTT	19	-	35778788-35778819:35778927-35778944	19q12	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 10 (Psmb10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC112890	MGC112890
Rattus norvegicus	RefSeq	GI_62653406-S	ILMN_271585	RGD1561264_PREDICTED	XM_001077345.1	XM_001077345.1		313786	109484361	XM_001077345.1	RGD1561264_predicted	XP_001077345.1	ILMN_1367799	0003360546	S	422	TCGAGACTGGGCTGCCAGATTGTGCTAACCCCTGAGCTGGAAGGAGCTGA				8q13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC19604 (predicted) (RGD1561264_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647471-S	ILMN_68370	USP39_PREDICTED	XM_216173.4	XM_216173.4		297336	109472162	XM_216173.4	Usp39_predicted	XP_216173.3	ILMN_1358045	0003360465	S	1729	GCTTGAATGCCTTTTCTGGGGTTTGCTCCCAGGGGCTATGGCTGAAGACG	4	-	105624338-105624382:105624383-105624387	4q33	PREDICTED: Rattus norvegicus ubiquitin specific protease 39 (predicted) (Usp39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605649-S	ILMN_290995	RGD1306954	NM_001008288.1	NM_001008288.1		288269	56605649	NM_001008288.1	RGD1306954	NP_001008289.1	ILMN_1353471	0003870279	S	878	GAGAATGACGATGACTCCTGTCTAAACTCCCCGTGGGCTGACAACACGGC	11	-	30910380-30910429	11q11	Rattus norvegicus similar to RIKEN cDNA 1110004E09 (RGD1306954), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			MGC105532	MGC105532
Rattus norvegicus	RefSeq	GI_56090324-S	ILMN_299270	TMEM206	NM_001007679.1	NM_001007679.1		305070	56090324	NM_001007679.1	Tmem206	NP_001007680.1	ILMN_1350631	0006660538	S	1131	CCCCAGCACTCCGACAAACCGAGCCACCAGCACTCCTGTACTCACTTGAA	13	+	107411843-107411892	13q27	Rattus norvegicus transmembrane protein 206 (Tmem206), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC95217	MGC95217
Rattus norvegicus	RefSeq	GI_62638909	ILMN_49993	LOC499079	XM_574363.1	XM_574363.1		499079	62638909	XM_574363.1	LOC499079	XP_574363.1	ILMN_1650602	0005860022	S	238	GGCAGGACCCCACGAGCAAACTTGAGCCTTGGAACCACAGAAATAGCAGA					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC499079), mRNA.					
Rattus norvegicus	RefSeq	GI_62642166-S	ILMN_51906	GLDC_PREDICTED	XM_219785.4	XM_219785.4		309312	109459999	XM_219785.4	Gldc_predicted	XP_219785.3	ILMN_1353193	0006770253	S	3053	CGCTGGGATCGCCCATATTCCAGAGAGGTGGCAGCATTTCCTCTGCCCTT	1	-	233847352-233847357:233848018-233848061	1q52	PREDICTED: Rattus norvegicus glycine decarboxylase (predicted) (Gldc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641944-S	ILMN_265313	LOC680907	XR_005909.1	XR_005909.1		680907	109459589	XR_005909.1	LOC680907		ILMN_1355964	0004850019	S	2994	CGATGCAGAAGAGCCTAAGGACAGCCCTGGGGAAGATATGGAGGCTAGGC	1	+	200193228-200193277	1q41	PREDICTED: Rattus norvegicus similar to scavenger receptor cysteine-rich type 1 protein M160 precursor (LOC680907), mRNA.					
Rattus norvegicus	RefSeq	GI_62661477-S	ILMN_262725	PCK2_PREDICTED	XM_001055522.1	XM_001055522.1		361042	109502408	XM_001055522.1	Pck2_predicted	XP_001055522.1	ILMN_1367312	0006380364	S	1690	ATCATCTTCGGAGGCCGCAGACCTAAAGGGGTACCACTGGTGTATGAGGC				15p13	PREDICTED: Rattus norvegicus phosphoenolpyruvate carboxykinase 2 (mitochondrial) (predicted) (Pck2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663132-S	ILMN_262891	SLC35D2_PREDICTED	XM_001059113.1	XM_001059113.1		290959	109505338	XM_001059113.1	Slc35d2_predicted	XP_001059113.1	ILMN_1373539	0001230184	S	1238	TGCTCAAAGTCAGCCATGGGGCCCTCACTGTGTGCTGAGGAAGATATTTC				17p14	PREDICTED: Rattus norvegicus solute carrier family 35, member D2 (predicted) (Slc35d2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643961	ILMN_280212	LOC685912	XM_001065728.1	XM_001065728.1		685912	109465128	XM_001065728.1	LOC685912	XP_001065728.1	ILMN_1650693	0004200520	S	93	GCCATGCGTCTCACAAATCAAGTCACCCTGTGACACCAAGGTTCCTGAGC	2	-	185418426-185418475	2q34	PREDICTED: Rattus norvegicus similar to Cornifin B (Small proline-rich protein 1B) (SPR1B) (SPR1 B) (LOC685912), mRNA.					
Rattus norvegicus	RefSeq	GI_8393612-S	ILMN_279864	INHBA	NM_017128.1	NM_017128.1		29200	8393612	NM_017128.1	Inhba	NP_058824.1	ILMN_1370619	0004210450	S	1201	TATTGTGAGGGTGAGTGCCCAAGCCACATAGCAGGCACCTCTGGGTCCTC	17	-	57244762-57244811	17q12.1	Rattus norvegicus inhibin beta-A (Inhba), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A nonsteroidal regulator, composed of two covalently linked inhibin beta-A subunits (sometimes known as activin beta-A or activin/inhibin beta-A) [goid 43509] [evidence IEA]; A nonsteroidal regulator, composed of two covalently linked inhibin beta-A subunits (sometimes known as activin beta-A or activin/inhibin beta-A) [goid 43509] [evidence ISS]; Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit [goid 43512] [evidence IEA]; Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit [goid 43512] [evidence IDA]; Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit [goid 43512] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32925] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32925] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence IEA]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with the peptide hormone follistatin [goid 48184] [evidence IEA]; Interacting selectively with the peptide hormone follistatin [goid 48184] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650964-S	ILMN_263633	RGD1562622_PREDICTED	XM_001078413.1	XM_001078413.1		503035	109479396	XM_001078413.1	RGD1562622_predicted	XP_001078413.1	ILMN_1352301	0004670673	S	676	GCCCTCATCATGGAGCAGTTTATCATCCGCAACACCCTCCGCCTGCGCTT				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330442E10 gene (predicted) (RGD1562622_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660636-S	ILMN_64655	RGD1308380_PREDICTED	XM_223529.4	XM_223529.4		305443	109499899	XM_223529.4	RGD1308380_predicted	XP_223529.4	ILMN_1366679	0006510100	S	1795	CTGAAGACCTGGAATGGAGGAGGGAGCCTTTCCTTGGCAGAAGTGGCTGC	14	+	80826576-80826597:80828266-80828293	14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310079F23 (predicted) (RGD1308380_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649561-S	ILMN_58482	HIVEP3_PREDICTED	XM_233464.3	XM_233464.3		313557	62649561	XM_233464.3	Hivep3_predicted	XP_233464.3	ILMN_1363842	0002570097	S	6223	GAAGCCCGGAAACGTGCGCCTCTGCATGGAAGACTGAATCCCGAAGTCCA				5q36	PREDICTED: Rattus norvegicus human immunodeficiency virus type I enhancer binding protein 3 (predicted) (Hivep3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527507-S	ILMN_269030	ITFG3	NM_001009701.1	NM_001009701.1		360502	57527507	NM_001009701.1	Itfg3	NP_001009701.1	ILMN_1368896	0006380112	S	2520	AGATCTCTAGCTCTGTAGCCAAAGCCGTCCCATGACCCCAGCCACCATGG	10	-	15479413-15479462	10q12	Rattus norvegicus integrin alpha FG-GAP repeat containing 3 (Itfg3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1311484; MGC93756	RGD1311484; MGC93756
Rattus norvegicus	RefSeq	GI_62656165-S	ILMN_51942	TOM1L2_PREDICTED	XM_340810.3	XM_340810.3		360537	109488163	XM_340810.3	Tom1l2_predicted	XP_340811.2	ILMN_1354178	0001660131	S	1546	GGCCCCTGCACCAGCCTCAAACACTTCAAACCGGAAGAAGCCAGAGCGGT	10	-	46493173-46493222	10q22	PREDICTED: Rattus norvegicus target of myb1-like 2 (chicken) (predicted) (Tom1l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650709-S	ILMN_264747	TITF1	XM_001079296.1	XM_001079296.1		25628	109479409	XM_001079296.1	Titf1	XP_001079296.1	ILMN_1359201	0003800082	S	1022	TGCAGGGCCAGGTCTCTAGCCTATCTCATCTGAACTCCTCTGGCTCGGAC				6q23	PREDICTED: Rattus norvegicus thyroid transcription factor 1 (Titf1), mRNA.					
Rattus norvegicus	RefSeq	GI_62657136-S	ILMN_68476	RGD1563878_PREDICTED	XM_573201.2	XM_573201.2		498005	109489105	XM_573201.2	RGD1563878_predicted	XP_573201.1	ILMN_1349425	0003780082	S	1312	CCACTGCTCAGAGACTACCTGCTGCTGTGTGTGGAGGGACGAATCCAGTG	10	+	91359086-91359135	10q32.1	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain-containing SOCS box protein Asb-16 (predicted) (RGD1563878_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648040-S	ILMN_49435	RGD1565997_PREDICTED	XM_575643.2	XM_575643.2		500294	109472479	XM_575643.2	RGD1565997_predicted	XP_575643.1	ILMN_1368445	0004730332	S	235	CTCCGAGCCGTGAGTAACAAGAAAGGAGTGGTGAGGAAACCCCAGCCAGT	4	-	149501776-149501825	4q42	PREDICTED: Rattus norvegicus similar to 4931417G12Rik protein (predicted) (RGD1565997_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647602-S	ILMN_51344	LOC502842	XM_578342.1	XM_578342.1		502842	62647602	XM_578342.1	LOC502842	XP_578342.1	ILMN_1366041	0000780142	S	109	GGGCCACCATCTCCTGTAGGGCCAGCCAGAGTGTCAGTATATCTAGCATT				4q32	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502842), mRNA.					
Rattus norvegicus	RefSeq	GI_62663882-S	ILMN_266057	RGD1562601_PREDICTED	XM_001064745.1	XM_001064745.1		291308	109506069	XM_001064745.1	RGD1562601_predicted	XP_001064745.1	ILMN_1360914	0003450114	S	467	TGAGGACTAACGGGAAGGAGCCTGAGCTGCTGGAGCCTATTCTGTACGAA				17q12.3	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1562601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262177-S	ILMN_270810	RNF138	NM_053588.2	NM_053588.2		94196	54262177	NM_053588.2	Rnf138	NP_446040.1	ILMN_1371446	0004670300	S	2558	GGTTAGTAGCCGCCAGCATGAAGGAGGAAGCTGTAGCAGTGTGCTGACGC	18	+	12788620-12788635	18p12	Rattus norvegicus ring finger protein 138 (Rnf138), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Trif; Rsd4; MGC72355	Trif; Rsd4; MGC72355
Rattus norvegicus	RefSeq	GI_62078998-S	ILMN_287167	TRAF3IP3	NM_001014132.1	NM_001014132.1		360900	62078998	NM_001014132.1	Traf3ip3	NP_001014154.1	ILMN_1365920	0007100463	S	1455	GTGAAGCCTGAGGGTACAGGAAAGGAGAAAGTCGAGGAGCTCAGAGACCA	13	-	109011859-109011908	13q27	Rattus norvegicus TRAF3 interacting protein 3 (Traf3ip3), mRNA.				RGD1304848; MGC108851	RGD1304848; MGC108851
Rattus norvegicus	RefSeq	GI_47576568-S	ILMN_269410	OLR869	NM_001000413.1	NM_001000413.1		298478	47576568	NM_001000413.1	Olr869	NP_001000413.1	ILMN_1367915	0005290711	S	898	ATCAAGAGGGCATTTCTCAAGGTGATGGGACATGGTAGGGTGGACTGGTG	5	-	139462383-139462432	5q36	Rattus norvegicus olfactory receptor 869 (Olr869), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr869	Olr869
Rattus norvegicus	RefSeq	GI_62653342-S	ILMN_48206	LOC500957	XM_580140.1	XM_580140.1		500957	62653342	XM_580140.1	LOC500957	XP_580140.1	ILMN_1374877	0000450170	S	233	CCTGAACCCATTGGCCGCTCTCCATACCCATACTTGGACCTTCTTGAGGC					PREDICTED: Rattus norvegicus LOC500957 (LOC500957), mRNA.					
Rattus norvegicus	RefSeq	GI_62658294-S	ILMN_63396	LOC498123	XM_573334.1	XM_573334.1		498123	62658294	XM_573334.1	LOC498123	XP_573334.1	ILMN_1359842	0000840438	S	277	ATCTTCCAGGAGCGAGATCCCGCTGGCGCACTAAAGGGCATCCTGGGCTA				12p12	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC498123), mRNA.					
Rattus norvegicus	RefSeq	GI_6978478-S	ILMN_287063	AK3	NM_013218.1	NM_013218.1		26956	6978478	NM_013218.1	Ak3	NP_037350.1	ILMN_1353633	0004850075	S	642	CTCCGGAACAGAAACCAACAAGATCAGGCCCCACGTATACTCCTTCCTGC	1	-	232659246-232659295	1q52	Rattus norvegicus adenylate kinase 3 (Ak3), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The process of introducing a phosphate group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphate groups produces ATP [goid 6756] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IDA]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Catalysis of the reaction: nucleoside triphosphate + AMP = nucleoside diphosphate + ADP [goid 46899] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34880702-S	ILMN_262427	RGD1565657_PREDICTED	XM_001066459.1	XM_001066459.1		299036	109512001	XM_001066459.1	RGD1565657_predicted	XP_001066459.1	ILMN_1363854	0000670014	S	1184	GCAGCTGGACCTGGACTGGCTTTAACTTTGGCTGGGACTTGGTAGTATGC				Xq31	PREDICTED: Rattus norvegicus similar to germ cell-less (predicted) (RGD1565657_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657173-S	ILMN_70305	MAP3K14_PREDICTED	XM_340918.2	XM_340918.2		360640	62657173	XM_340918.2	Map3k14_predicted	XP_340919.2	ILMN_1359019	0002230324	S	3348	TCCTTGACCCCGTGTGAGGTGGACGAGGCAGGAAGGACACGAGAATGCAC				10q32.1	PREDICTED: Rattus norvegicus mitogen-activated protein kinase kinase kinase 14 (predicted) (Map3k14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656706-S	ILMN_64292	USP32_PREDICTED	XM_220798.4	XM_220798.4		303394	109488722	XM_220798.4	Usp32_predicted	XP_220798.4	ILMN_1370039	0002350288	S	5289	GGAGAAAGCAAGACCATGTAGGAGTGCAGACAGTTCTTAGGTATGGACAC	10	-	73258255-73258304	10q26	PREDICTED: Rattus norvegicus ubiquitin specific protease 32 (predicted) (Usp32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9845278	ILMN_299025	OXTR	NM_012871.2	NM_012871.2		25342	9845278	NM_012871.2	Oxtr	NP_037003.2	ILMN_1650850	0005900070	S	1076	CGAGTGTCAGCAAGAAGAGCAACTCATCCACCTTTGTCCTGAGCCGTCGC	4	-	148314130-148314179	4q42	Rattus norvegicus oxytocin receptor (Oxtr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with oxytocin to initiate a change in cell activity [goid 4990] [evidence IDA]; Combining with oxytocin to initiate a change in cell activity [goid 4990] [evidence IEA]; Combining with vasopressin to initiate a change in cell activity [goid 5000] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]	OTR; OTR1	OTR; OTR1
Rattus norvegicus	RefSeq	GI_62643119-S	ILMN_55077	DNAHC5	XM_226891.4	XM_226891.4		294854	109464558	XM_226891.4	Dnahc5	XP_226891.3	ILMN_1350323	0004850279	S	13935	GCAAGAGATCCTCGGTTGTACTGCTGTCCCATCTACAAGAAGCCAGTTCG	2	+	80389834-80389883	2q22	PREDICTED: Rattus norvegicus dynein, axonemal, heavy chain 5 (Dnahc5), mRNA.					
Rattus norvegicus	RefSeq	GI_62658187-S	ILMN_54926	LOC498114	XM_573323.1	XM_573323.1		498114	62658187	XM_573323.1	LOC498114	XP_573323.1	ILMN_1374982	0002120592	S	1024	GGACCATAACACTCTCAGTCTTAGCAGAGCAACTGGGCCTGTCTGCAGGC					PREDICTED: Rattus norvegicus similar to Guanine nucleotide binding protein (G protein), beta polypeptide 1-like (LOC498114), mRNA.					
Rattus norvegicus	RefSeq	GI_62665179-S	ILMN_295060	RGD1565341_PREDICTED	XM_001073538.1	XM_001073538.1		498944	109508691	XM_001073538.1	RGD1565341_predicted	XP_001073538.1	ILMN_1374956	0006100736	S	1953	GGACACTGATGAACATTGATCCCACCATGGACAGGCAGACTCTGAGTGCC				19q12	PREDICTED: Rattus norvegicus similar to translin-associated factor X (Tsnax) interacting protein 1 (predicted), transcript variant 2 (RGD1565341_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661464-S	ILMN_66065	PABPN1	XM_214172.4	XM_214172.4		116697	109501607	XM_214172.4	Pabpn1	XP_214172.3	ILMN_1361731	0007100537	S	1494	TGTAGCCGGAAGATCTCGCTCCCAGCGGCTCCAGTGTAAATTCCCCTCTC	15	+	32998810-32998859	15p13	PREDICTED: Rattus norvegicus poly(A) binding protein, nuclear 1 (Pabpn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664130-S	ILMN_296508	SLC39A6	NM_001024745.1	NM_001024745.1		291733	67078521	NM_001024745.1	Slc39a6	NP_001019916.1	ILMN_1360258	0001500142	S	2081	ACCGTCAAGCAGGCAGTGCTCTACAATGCCCTGTCAGCCATGCTGGCCTA	18	-	16355599-16355648	18p12	Rattus norvegicus solute carrier family 39 (metal ion transporter), member 6 (Slc39a6), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659122-A	ILMN_273649	SERPINB5	NM_057108.1	NM_057108.1		116589	16923953	NM_057108.1	Serpinb5	NP_476449.1	ILMN_1376504	0000630021	S	2218	GGGACTTTCCTCTTTGCCTAATGTGTCGGGGGTGGGGAGGTAAGGGATCC	13	+	13057426-13057475	13p13	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B, member 5 (Serpinb5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Pi5; Maspin	Pi5; Maspin
Rattus norvegicus	RefSeq	GI_62639625-S	ILMN_268725	KLK7_PREDICTED	XM_001080426.1	XM_001080426.1		292852	109461838	XM_001080426.1	Klk7_predicted	XP_001080426.1	ILMN_1354249	0006200041	S	270	GGGCACCACAACCAGCCCAGATGTGACCTTCCCCTCGGATCTTATGTGCT				1q22	PREDICTED: Rattus norvegicus kallikrein 7 (chymotryptic, stratum corneum) (predicted) (Klk7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11120699	ILMN_274148	BIRC2	NM_021752.1	NM_021752.1		60371	11120699	NM_021752.1	Birc2	NP_068520.1	ILMN_1650704	0007000398	S	2942	GTGTGTATGTCCCAGAGCACGAGTGGGGATGCTTGCTGTGTGTCCTCAGG	8	-	4649830-4649879	8q11	Rattus norvegicus baculoviral IAP repeat-containing 2 (Birc2), mRNA.	A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery [goid 1741] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Api2; rIAP1	Api2; rIAP1
Rattus norvegicus	RefSeq	GI_62661088	ILMN_57512	LOC501955	XM_577382.1	XM_577382.1		501955	62661088	XM_577382.1	LOC501955	XP_577382.1	ILMN_1650647	0000060156	S	49	CGCGCTATGAGAAAATTCATCAATCTGCTCCAGCAGTCCCAGTCCTATTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (LOC501955), mRNA.					
Rattus norvegicus	RefSeq	GI_62644099-S	ILMN_59188	SLC22A15_PREDICTED	XM_227523.4	XM_227523.4		310732	109465356	XM_227523.4	Slc22a15_predicted	XP_227523.4	ILMN_1359319	0001780154	S	2088	CAAGGCCAGCAGCTTGGGGAGCGAGAGTGAGGAAGAGGAGGAAGAGTTCT	2	-	196954793-196954842	2q34	PREDICTED: Rattus norvegicus solute carrier family 22 (organic cation transporter), member 15 (predicted) (Slc22a15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777703-S	ILMN_300030	OLR907	NM_001001357.1	NM_001001357.1		288801	47777703	NM_001001357.1	Olr907	NP_001001357.1	ILMN_1362218	0002060603	S	849	CCCCTTCATCTACACACTTAGGAACAGGCAAGTCAAGCAAGCCTTCTGTG	7	+	3654727-3654776	7q11	Rattus norvegicus olfactory receptor 907 (Olr907), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr907	Olr907
Rattus norvegicus	RefSeq	GI_62655695-S	ILMN_300757	ROGDI	NM_001024864.1	NM_001024864.1		287061	67846009	NM_001024864.1	Rogdi	NP_001020035.1	ILMN_1367245	0005390288	S	1198	GAGCTACACCTGGAGAAAGGGGAGCTGGCTTGGTTTTTTGGTTGAGGGGG	10	+	10688016-10688065	10q12	Rattus norvegicus rogdi homolog (Drosophila) (Rogdi), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_6978632-S	ILMN_281699	CD53	NM_012523.1	NM_012523.1		24251	6978632	NM_012523.1	Cd53	NP_036655.1	ILMN_1353693	0007050632	S	1347	CCAGTTCCCTTTTGAACACAGTCCTTGGGAATAGGAATCATACAGAGATC	2	-	202186412-202186461	2q34	Rattus norvegicus Cd53 molecule (Cd53), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence NAS]		Ox-44; OX44; RATOX44	Ox-44; OX44; RATOX44
Rattus norvegicus	RefSeq	GI_62656833-S	ILMN_265255	RGD1561118_PREDICTED	XM_001081212.1	XM_001081212.1		287618	109491624	XM_001081212.1	RGD1561118_predicted	XP_001081212.1	ILMN_1372813	0001580066	S	184	TTCACTAGCCGTGTAGCAAAGCCTGAGGACCCAGCCCTCGTGACCCTGGC				10q26	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (predicted) (RGD1561118_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646326-S	ILMN_270329	GDAP1L1_PREDICTED	XM_001069499.1	XM_001069499.1		311616	109471252	XM_001069499.1	Gdap1l1_predicted	XP_001069499.1	ILMN_1364473	0006220072	S	1849	CAGCTGGTGAGGTTTGGCACTTACCTAGAAATCCCCTGAGGCGGCAGCCA				3q42	PREDICTED: Rattus norvegicus ganglioside-induced differentiation-associated protein 1-like 1 (predicted) (Gdap1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666210-S	ILMN_63332	LOC502455	XM_577936.1	XM_577936.1		502455	62666210	XM_577936.1	LOC502455	XP_577936.1	ILMN_1363826	0004610735	S	1011	GCGACCAGCCCCACTTCCACGAAGAGCTTGAGGACTCCTGGCATCGAATC					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502455), mRNA.					
Rattus norvegicus	RefSeq	GI_62658275-S	ILMN_60363	LOC363843	XM_344052.2	XM_344052.2		363843	62658275	XM_344052.2	LOC363843	XP_344053.2	ILMN_1361909	0004780121	S	36	GTCTCAGACACTGTATTCAGACCTGCAGGAAAAGACTGCCTCTCGGGAGA					PREDICTED: Rattus norvegicus similar to fatty acid binding protein 6, ileal (gastrotropin) (LOC363843), mRNA.					
Rattus norvegicus	RefSeq	GI_62660703-S	ILMN_50553	RGD1560908_PREDICTED	XM_223589.4	XM_223589.4		305468	109499968	XM_223589.4	RGD1560908_predicted	XP_223589.3	ILMN_1369099	0006290075	S	2042	GAGATGGGCTCAGAAACAGGCAACAGCGAATGACAAAGTCACCAGCACCC	14	+	83843076-83843094:83845973-83846003	14q21	PREDICTED: Rattus norvegicus similar to Clast4 protein (predicted) (RGD1560908_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173773-S	ILMN_280398	RAP2B	NM_133410.1	NM_133410.1		170923	19173773	NM_133410.1	Rap2b	NP_596901.1	ILMN_1362323	0000940059	S	465	GCTATTCGCAGAGATCGTGAGGCAGATGAACTACGCGGCACAGCCCAACG	2	+	150826947-150826996	2q31	Rattus norvegicus RAP2B, member of RAS oncogene family (Rap2b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651694-S	ILMN_263640	HMG20B_PREDICTED	XM_001075699.1	XM_001075699.1		362825	109481530	XM_001075699.1	Hmg20b_predicted	XP_001075699.1	ILMN_1368886	0005130110	S	805	GCGCTGCAACAGCAACTGCAGGCTGTGAGACAAGCGCTCACGGCTAGTTT				7q11	PREDICTED: Rattus norvegicus high mobility group 20 B (predicted) (Hmg20b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658309-S	ILMN_263843	LOC688750	XM_001068161.1	XM_001068161.1		688750	109494946	XM_001068161.1	LOC688750	XP_001068161.1	ILMN_1353683	0003940440	S	482	TCAGCGATCATCAACGCGAAGGTTCCTGGCAGTGGGTGGATGACACCCCA	12	-	1658298-1658347	12p12	PREDICTED: Rattus norvegicus similar to CD209 antigen (LOC688750), mRNA.					
Rattus norvegicus	RefSeq	GI_62718824-S	ILMN_64716	LOC501490	XM_576896.1	XM_576896.1		501490	62718824	XM_576896.1	LOC501490	XP_576896.1	ILMN_1364839	0003840019	S	975	GACCAGCAACCTCCAGACCCAGCATCATCAGGTCTCAGAAAGTGCAAGCG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501490), mRNA.					
Rattus norvegicus	RefSeq	GI_62658171-S	ILMN_54115	LOC498112	XM_573318.1	XM_573318.1		498112	62658171	XM_573318.1	LOC498112	XP_573318.1	ILMN_1353598	0006220035	S	4440	CCCTACTGTGGGGAAGGCTACCCTGATGCTGTAGTTCCTCAGGTCATGGG				11q23	PREDICTED: Rattus norvegicus similar to YEATS domain containing 2 (LOC498112), mRNA.					
Rattus norvegicus	RefSeq	GI_62638652-S	ILMN_60227	RGD1559858_PREDICTED	XM_574328.2	XM_574328.2		499047	109457862	XM_574328.2	RGD1559858_predicted	XP_574328.2	ILMN_1353254	0002760504	S	761	CAGCACTTGTGATTGATGACCACATGTGAAAAGATCAGTAGCCCCTGGAG	1	+	51925785-51925834	1q12	PREDICTED: Rattus norvegicus similar to kinesin family member 25 (predicted) (RGD1559858_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664347-S	ILMN_62802	MYOT_PREDICTED	XM_214563.4	XM_214563.4		291605	109506541	XM_214563.4	Myot_predicted	XP_214563.2	ILMN_1371110	0007040315	S	1897	CACCCTCTGACTCTGGCACAACGTGTCTATTCCTCTGACCTGTGAAGCCG	18	+	38023222-38023271	18q11	PREDICTED: Rattus norvegicus myotilin (predicted) (Myot_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54019433-S	ILMN_302171	PCDHA2	NM_199504.1	NM_199504.1		393086	54019433	NM_199504.1	Pcdha2	NP_955798.1	ILMN_1348990	0002940128	S	2328	CCAAGGTCCAGAATCGGCAGAAGAGAGACAACCACCCTTAGAGGCCGAAC	18	+	29672865-29672914	18p11	Rattus norvegicus protocadherin alpha 2 (Pcdha2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	rCNRv02	rCNRv02
Rattus norvegicus	RefSeq	GI_33186911-S	ILMN_282162	DDX25	NM_031630.2	NM_031630.2		58856	33186911	NM_031630.2	Ddx25	NP_113818.2	ILMN_1353681	0002940082	S	1147	GGAGCAGCGGGCTTCCATCATTCAGAGGTTCCGAGATGGCAAAGAGAAGG	8	-	35330548-35330597	8q21	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 (Ddx25), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182) [goid 33391] [evidence ISS]; A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182) [goid 33391] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182) [goid 33391] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 16968703] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 16968703] [evidence IDA]; A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182) [goid 33391] [evidence ISS]	The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a RNA helix [goid 3724] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix [goid 4004] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix [goid 4004] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix [goid 4004] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix [goid 4004] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	GRTH	GRTH
Rattus norvegicus	RefSeq	GI_58219513	ILMN_283416	RGD1307789	NM_001010947.1	NM_001010947.1		288912	58219513	NM_001010947.1	RGD1307789	NP_001010947.1	ILMN_1651020	0007050397	S	1021	ATGTCACCCCCCACGAACTCATCACAGGCGGCATCATCACTGAGCTGGGT	19	+	25596908-25596957	19q11	Rattus norvegicus similar to hypothetical protein MGC3207 (RGD1307789), mRNA.		The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells [goid 44249] [evidence IEA]	Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC105780	MGC105780
Rattus norvegicus	RefSeq	GI_40786500-S	ILMN_291732	SPATA20	NM_199402.1	NM_199402.1		360604	40786500	NM_199402.1	Spata20	NP_955434.1	ILMN_1365292	0004150301	S	2457	CCAGAGGCTATGCCAAATCTATAGCCACCCCTGGGAACCCTGCCTCCAGA	10	-	83117734-83117783	10q31	Rattus norvegicus spermatogenesis associated 20 (Spata20), mRNA.		The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ssp411	Ssp411
Rattus norvegicus	RefSeq	GI_62648893-S	ILMN_69420	LOC313493	XM_233379.3	XM_233379.3		313493	62648893	XM_233379.3	LOC313493	XP_233379.3	ILMN_1363188	0000670368	S	2994	ATGGCGAATCCTGTGCCCCAGCCAAACCAAGGAGCTGCAGAAGGGTGCAA				5q22	PREDICTED: Rattus norvegicus similar to hypothetical protein F730001J03 (predicted) (LOC313493), mRNA.					
Rattus norvegicus	RefSeq	GI_27730130-S	ILMN_57459	RGD1311201_PREDICTED	XM_217884.2	XM_217884.2		292295	109457762	XM_217884.2	RGD1311201_predicted	XP_217884.1	ILMN_1368949	0004050546	S	1665	CCCCTCAGCATCTTAATACACAGCCACAGGTCACCACGCAGCGGTCTGCT	1	+	45592064-45592113	1q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932702K14 (predicted) (RGD1311201_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664798-S	ILMN_62264	RGD1560538_PREDICTED	XM_214633.4	XM_214633.4		291844	109507690	XM_214633.4	RGD1560538_predicted	XP_214633.3	ILMN_1365303	0000060400	S	1154	CATGCCTGCTGAGGAGTTCAGAGACTACAAAGAGCGGGCTGGATGGGGAG	19	-	9804544-9804593	19p13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21148 (predicted) (RGD1560538_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651915-S	ILMN_263431	RBMS2	NM_001025403.1	NM_001025403.1		288771	70794781	NM_001025403.1	Rbms2	NP_001020574.1	ILMN_1360654	0002320170	S	1098	GCAGTGGAGCCCCCCTCAGACCATGGGGTCTATCCTTTCCAGTTCAGCAA	7	-	1427033-1427082	7q11	Rattus norvegicus RNA binding motif, single stranded interacting protein 2 (Rbms2), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645450-S	ILMN_273748	RAG2_PREDICTED	XM_001079235.1	XM_001079235.1		295953	109470380	XM_001079235.1	Rag2_predicted	XP_001079235.1	ILMN_1359942	0001400672	S	1727	CCTCCCCTTACAAAAGCCCCCAATGAAATCCCTCCACAAAAAAGGCTCCG				3q31	PREDICTED: Rattus norvegicus recombination activating gene 2 (predicted) (Rag2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663401-S	ILMN_52486	HIVEP1	XM_225241.4	XM_225241.4		117140	109504807	XM_225241.4	Hivep1	XP_225241.4	ILMN_1358961	0001450110	S	7984	AAGGCCCTCAGGAAACCCCACAAACAGTGCCCGGTCCCTCAGTTGACCAT	17	-	28449026-28449075	17p12	PREDICTED: Rattus norvegicus human immunodeficiency virus type I enhancer binding protein 1 (Hivep1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_54262167-S	ILMN_287196	ARF1	NM_022518.2	NM_022518.2		64310	54262167	NM_022518.2	Arf1	NP_071963.1	ILMN_1360762	0002230161	S	1407	CTCACCAGCAGGAGTGCGTGCAAGGTGGGAGGGTCGGTCCATTACAGACC	10	-	45516060-45516109	10q22	Rattus norvegicus ADP-ribosylation factor 1 (Arf1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence IEA]	The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat [goid 48205] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC72830	MGC72830
Rattus norvegicus	RefSeq	GI_21955141-S	ILMN_294935	PZP	NM_145779.1	NM_145779.1		252922	21955141	NM_145779.1	Pzp	NP_665722.1	ILMN_1374242	0002480181	S	4360	GCTCCAAGACCAGTCTAACATTCAGAGGACTGAAGTGAACACCAACCACG	4	-	165506858-165506877:165507918-165507947	4q42	Rattus norvegicus pregnancy-zone protein (Pzp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 17114] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646445-S	ILMN_283759	RGD1307805_PREDICTED	XM_001054035.1	XM_001054035.1		296411	109471412	XM_001054035.1	RGD1307805_predicted	XP_001054035.1	ILMN_1373000	0003450010	S	275	GCTCCCAGTTCCGCTCTCCACCAAAGAAAGCCCAAAGTATTTCCCCCAGC				3q42	PREDICTED: Rattus norvegicus hypothetical LOC296411 (predicted) (RGD1307805_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657628-S	ILMN_59729	RGD1562726_PREDICTED	XM_573257.2	XM_573257.2		498060	109492923	XM_573257.2	RGD1562726_predicted	XP_573257.2	ILMN_1364592	0001050270	S	338	AGTACCTGGCTGTCTGTGGCCTGAAGAGGCTTCACATCAATACTGAGGCC	11	-	31041702-31041751	11q11	PREDICTED: Rattus norvegicus similar to Putative protein C21orf62 homolog (predicted) (RGD1562726_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718054-S	ILMN_271896	LOC301130	XM_001061312.1	XM_001061312.1		301130	109486620	XM_001061312.1	LOC301130	XP_001061312.1	ILMN_1359429	0005220066	S	2747	GCCGTACCAGCTCCAGATTTACCCAAATGAGAGACACAGCATTCGCTGCC					PREDICTED: Rattus norvegicus similar to Dipeptidyl peptidase 9 (Dipeptidyl peptidase IX) (DP9) (Dipeptidyl peptidase-like protein 9) (DPLP9) (LOC301130), mRNA.					
Rattus norvegicus	RefSeq	GI_62657707-S	ILMN_63751	LOC363729	XM_344000.2	XM_344000.2		363729	62657707	XM_344000.2	LOC363729	XP_344001.2	ILMN_1365864	0005720239	S	953	GGCCTCCTCCAGATGCGAACACAGTGTGAGTATGGGAATGTGGAGTCCTG					PREDICTED: Rattus norvegicus similar to OTTHUMP00000017090 (LOC363729), mRNA.					
Rattus norvegicus	RefSeq	GI_62659006-S	ILMN_60459	LOC498192	XM_579793.1	XM_579793.1		498192	62659006	XM_579793.1	LOC498192	XP_579793.1	ILMN_1354463	0004850037	S	2362	AGCCTGCACTGATGTGAACAGCACCTCACTGTGGGGTCACGTCTGGAAAT				12q16	PREDICTED: Rattus norvegicus LOC498192 (LOC498192), mRNA.					
Rattus norvegicus	RefSeq	GI_62640872-S	ILMN_58564	LOC499197	XM_574484.1	XM_574484.1		499197	62640872	XM_574484.1	LOC499197	XP_574484.1	ILMN_1365191	0001340332	S	719	TAGGTATAGAAGAGAGTGAAGACTCCCAGCTCAAAGGACCACAACTGTGA					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499197), mRNA.					
Rattus norvegicus	RefSeq	GI_11968127-S	ILMN_288352	PRL8A7	NM_022537.1	NM_022537.1		64368	11968127	NM_022537.1	Prl8a7	NP_071982.1	ILMN_1352853	0003830463	S	491	TTGAGTGCCATGCAAGATGTCCCAGAATCTATCCTCTCTAAAGCCAAGGA	17	+	44152852-44152901	17p11	Rattus norvegicus prolactin family 8, subfamily a, member 7 (Prl8a7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	MGC114320; Prlpd	MGC114320; Prlpd
Rattus norvegicus	RefSeq	GI_47577040-S	ILMN_285868	OLR295	NM_001000233.1	NM_001000233.1		293595	47577040	NM_001000233.1	Olr295	NP_001000233.1	ILMN_1358758	0001850348	S	417	GCTGTGTGGGGTACTGGCCATGGGTGTATGGTCTGTCTGCGCACTGAATG	1	-	200296939-200296988	1q41	Rattus norvegicus olfactory receptor 295 (Olr295), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr295; ratchr1-200447397-200446465_ORF	Olr295; ratchr1-200447397-200446465_ORF
Rattus norvegicus	RefSeq	GI_57528940-S	ILMN_301126	ITGA7	NM_030842.1	NM_030842.1		81008	57528940	NM_030842.1	Itga7	NP_110469.1	ILMN_1350665	0005130309	S	3665	GGCATGACCTGGTGCAGGATGGAGAAGAAGGGGTACTGAGCTGCCTCTCT	7	+	2269181-2269230	7q11	Rattus norvegicus integrin alpha 7 (Itga7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IMP]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IDA]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]	Interacting selectively with laminins, glycoproteins that are major constituents of the basement membrane of cells [goid 43236] [evidence IDA]; Interacting selectively with laminins, glycoproteins that are major constituents of the basement membrane of cells [goid 43236] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105724	MGC105724
Rattus norvegicus	RefSeq	GI_62656803-S	ILMN_278133	LOC367923	XR_007292.1	XR_007292.1		367923	109469958	XR_007292.1	LOC367923		ILMN_1370706	0005690609	S	251	CCCACTGACCACCGAGTCAGCTATGAAGAAAATAGAGGACAACAACACGC				Xq35	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC367923), mRNA.					
Rattus norvegicus	RefSeq	GI_62659572-S	ILMN_57149	LOC498261	XM_573486.1	XM_573486.1		498261	62659572	XM_573486.1	LOC498261	XP_573486.1	ILMN_1371908	0002120170	S	690	CCTGTCACGAAACATCCAGAAGGGCAATTCCCAGGTTGTTCCCACCCACG					PREDICTED: Rattus norvegicus LOC498261 (LOC498261), mRNA.					
Rattus norvegicus	RefSeq	GI_21687115-S	ILMN_275468	MSX2	NM_012982.2	NM_012982.2		25483	21687115	NM_012982.2	Msx2	NP_037114.1	ILMN_1362059	0005900603	S	306	GCAAGCGGCATCCATATACAGCGCCTCCTACCCCTTCCATAGACCTGTGC	17	+	17247641-17247690	17p14	Rattus norvegicus msh homeo box homolog 2 (Drosophila) (Msx2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666625-S	ILMN_265296	RGD1564628_PREDICTED	XR_008155.1	XR_008155.1		302566	109511593	XR_008155.1	RGD1564628_predicted		ILMN_1350769	0004780440	S	1651	GAAATGACTACACAAGCCTACTGAAGCACCACACAGGCCTACCCAGGATG				Xq13	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 27, X chromosome (predicted) (RGD1564628_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660018-S	ILMN_279174	RNF3_PREDICTED	XM_001060303.1	XM_001060303.1		305624	109500219	XM_001060303.1	Rnf3_predicted	XP_001060303.1	ILMN_1363744	0002100575	S	1011	GAAAACACTTCGCAGTTTGCTCGTCTCTGCTCCAGGTCCACAGGCCAGAG				14p22	PREDICTED: Rattus norvegicus ring finger protein 3 (predicted) (Rnf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650415-S	ILMN_58484	LOC298844	XM_216649.3	XM_216649.3		298844	62650415	XM_216649.3	LOC298844	XP_216649.3	ILMN_1370621	0005270040	S	774	CTCCGGTCTGTAAACCTTCAATCACCAAAGCCCAGCCAGTGTTCCAGGCC					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC44505 (LOC298844), mRNA.					
Rattus norvegicus	RefSeq	GI_62662776-S	ILMN_61106	LOC364608	XM_577527.1	XM_577527.1		364608	62662776	XM_577527.1	LOC364608	XP_577527.1	ILMN_1352805	0005420048	S	739	CGCCAAAGAGGATCAAACAGGGAGCTACACAGCCCTCTCATTCAAGACGT				16q12.2	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC364608), mRNA.					
Rattus norvegicus	RefSeq	GI_62666953-S	ILMN_265450	EDA2R_PREDICTED	XM_001068241.1	XM_001068241.1		296872	109512034	XM_001068241.1	Eda2r_predicted	XP_001068241.1	ILMN_1374049	0005690746	S	792	CTCTGTCCCCTGTCCTGGAGCTGAAACCTTGAGAGAGAACACAGCTGAAC				Xq31	PREDICTED: Rattus norvegicus ectodysplasin A2 isoform receptor (predicted) (Eda2r_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641338-S	ILMN_280357	FBXL19_PREDICTED	XM_001078742.1	XM_001078742.1		308999	109462914	XM_001078742.1	Fbxl19_predicted	XP_001078742.1	ILMN_1357838	0000060047	S	3727	CCGGGGAATCTCGGACTTGGGGGAGTGTGATGTAAGGGGACCAACTTGAC				1q36	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 19 (predicted) (Fbxl19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34853422-S	ILMN_50227	LOC365612	XM_345130.1	XM_345130.1		365612	34853422	XM_345130.1	LOC365612	XP_345131.1	ILMN_1363889	0004850373	S	116	AGCAGAACATGGGAACGCCAGCGACCTGTATCTGGGAGAACTGTTCTTTG					PREDICTED: Rattus norvegicus similar to putative aminopeptidase Fxna (LOC365612), mRNA.					
Rattus norvegicus	RefSeq	GI_47577630-S	ILMN_283612	OLR653	NM_001000637.1	NM_001000637.1		404830	47577630	NM_001000637.1	Olr653	NP_001000637.1	ILMN_1359388	0004590619	S	426	TGTGGGTGTGTCATGGGTTGGAGGCTTTCTTCATGCAGGTATACAAATGC	3	+	72772708-72772757	3q24	Rattus norvegicus olfactory receptor 653 (Olr653), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr653	Olr653
Rattus norvegicus	RefSeq	GI_16758715-S	ILMN_265198	CACNB2	NM_053851.1	NM_053851.1		116600	16758715	NM_053851.1	Cacnb2	NP_446303.1	ILMN_1361088	0005050301	S	3773	CAAGAGCCCAGTGCTGATGGAGAGGTAAGACTGTATGAGCTCCACACGCC	17	+	89078748-89078797	17q12.3	Rattus norvegicus calcium channel, voltage-dependent, beta 2 subunit (Cacnb2), mRNA.	A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IMP]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence TAS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA];  [goid 5246] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15270] [evidence TAS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Cacnlb2	Cacnlb2
Rattus norvegicus	RefSeq	GI_62647907-S	ILMN_66121	RGD1563633_PREDICTED	XM_238366.4	XM_238366.4		297504	109472420	XM_238366.4	RGD1563633_predicted	XP_238366.4	ILMN_1364581	0003190048	S	3766	CGTTTACGTGTGACTGTGAATGACCCGCTAGGGACAGTGAAGACATCAGG	4	+	144380732-144380781	4q41	PREDICTED: Rattus norvegicus similar to mKIAA0212 protein (predicted) (RGD1563633_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654800-S	ILMN_52892	LOC501111	XM_576529.1	XM_576529.1		501111	62654800	XM_576529.1	LOC501111	XP_576529.1	ILMN_1361483	0004920095	S	501	GTGGTTTCCATGAGACGCCAAGAAATGTCAGCTGGGAACAAACCCAGGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05 (LOC501111), mRNA.					
Rattus norvegicus	RefSeq	GI_62658917-A	ILMN_287226	ADAM1A	NM_020078.1	NM_020078.1		56777	9910117	NM_020078.1	Adam1a	NP_064463.1	ILMN_1376520	0001580044	S	2381	GAAGCCAGCTGACCGAAACTTGAGTCTTTTTGGAGTTGGGGAGAGTCCGG	12	+	36154578-36154627	12q16	Rattus norvegicus a disintegrin and metallopeptidase domain 1a (Adam1a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence NAS]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence NAS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93473; Adam1; PH-30a	MGC93473; Adam1; PH-30a
Rattus norvegicus	RefSeq	GI_62652254-S	ILMN_60166	LOC497821	XM_579537.1	XM_579537.1		497821	62652254	XM_579537.1	LOC497821	XP_579537.1	ILMN_1353230	0001570739	S	1700	GATGAGCAGGCACTGAGGTGGGAGAGCTGTTAGGAGGCCCTGGAATTGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031815 (LOC497821), mRNA.					
Rattus norvegicus	RefSeq	GI_62662329-S	ILMN_62706	LOC502058	XM_577491.1	XM_577491.1		502058	62662329	XM_577491.1	LOC502058	XP_577491.1	ILMN_1373844	0002810711	S	192	GCTCAAAAGAGTCTGATGGAGCCCAAGGCACTGACTGTGGTTGAGCAGAT				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502058), mRNA.					
Rattus norvegicus	RefSeq	GI_62648492-S	ILMN_49193	LOC316482	XM_237258.3	XM_237258.3		316482	62648492	XM_237258.3	LOC316482	XP_237258.3	ILMN_1362909	0002810088	S	2356	CAGAAGAGAGCAAGTATTGCCAGCCCACCTCCAAAGTACCAATGTATGCC				5q11	PREDICTED: Rattus norvegicus similar to Cocoacrisp protein (LOC316482), mRNA.					
Rattus norvegicus	RefSeq	GI_16758341-S	ILMN_277209	MBTPS1	NM_053569.1	NM_053569.1		89842	16758341	NM_053569.1	Mbtps1	NP_446021.1	ILMN_1363250	0003170673	S	3740	AGTGCCTCACTGTGTTTGGCTCTGGCCGAAGGTGCCCAGTAGCTCAGCCT	19	-	49751529-49751578	19q12	Rattus norvegicus membrane-bound transcription factor peptidase, site 1 (Mbtps1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence ISS]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42990] [evidence ISS]; Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42990] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	S1p; Ski-1	S1p; Ski-1
Rattus norvegicus	RefSeq	GI_47777747-S	ILMN_277335	OLR1052	NM_001001363.1	NM_001001363.1		288838	47777747	NM_001001363.1	Olr1052	NP_001001363.1	ILMN_1362701	0006100364	S	311	CCCTTGGCTCAACAGAGTTTTTCCTTCTGGCATCCATGTCCTATGATCGC	7	+	7740530-7740579	7q11	Rattus norvegicus olfactory receptor 1052 (Olr1052), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1052	Olr1052
Rattus norvegicus	RefSeq	GI_62659470-S	ILMN_288970	RGD1565977_PREDICTED	XR_008717.1	XR_008717.1		289087	109498811	XR_008717.1	RGD1565977_predicted		ILMN_1354934	0004810673	S	686	AGTCTTGCCCACTATCCCATTTCAGAACAGAGGGGTGGGAAGCCAGAGGC				13q21	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3 (predicted) (RGD1565977_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651967-S	ILMN_68640	LOC503129	XM_578650.1	XM_578650.1		503129	62651967	XM_578650.1	LOC503129	XP_578650.1	ILMN_1358528	0002940014	S	1242	TGCCCGTGCGTCTGCAACAACATGTCGGAAGTTGAAATAATCCTGCCACC				7q13	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (LOC503129), mRNA.					
Rattus norvegicus	RefSeq	GI_62650970-S	ILMN_279293	RGD1561024_PREDICTED	XR_009429.1	XR_009429.1		503036	109479569	XR_009429.1	RGD1561024_predicted		ILMN_1348873	0005130333	S	372	TGGGAAAAAGTTTGCCAAGAAAAGGGACCGAGCAAACTGGGAAGACGATG				6q24	PREDICTED: Rattus norvegicus similar to M phase phosphoprotein 6 (predicted) (RGD1561024_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644653-S	ILMN_65049	LOC310968	XM_227820.4	XM_227820.4		310968	109465751	XM_227820.4	LOC310968	XP_227820.4	ILMN_1351976	0007100603	S	1305	CCAGCAGATGTTGAGGGCTGCGGATGATGCCTTAGAAGACTTGCCTCTCG	2|NW_047650.1	+	801609-801658		PREDICTED: Rattus norvegicus similar to histocompatibility 28 (LOC310968), mRNA.					
Rattus norvegicus	RefSeq	GI_62651547-S	ILMN_69339	LOC503096	XM_578616.1	XM_578616.1		503096	62651547	XM_578616.1	LOC503096	XP_578616.1	ILMN_1373057	0000070072	S	263	AAGTACAGACACATCCACCAAAACAGCTTACATGGAACTCAGCAGCCTGG				6q33	PREDICTED: Rattus norvegicus similar to OKT3 heavy chain variable region (LOC503096), mRNA.					
Rattus norvegicus	RefSeq	GI_62661325-S	ILMN_287684	RNASE1	XM_001064854.1	XM_001064854.1		364304	109502261	XM_001064854.1	Rnase1	XP_001064854.1	ILMN_1352121	0004210044	S	717	AGCAAGATGGCCCTCACCAGAGCATGTCCCTTCAACCTTAGACTTTCCCG				15p14	PREDICTED: Rattus norvegicus ribonuclease, RNase A family, 1 (pancreatic), transcript variant 2 (Rnase1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648258	ILMN_288254	CREBL2	NM_001015027.1	NM_001015027.1		362453	62543538	NM_001015027.1	Crebl2	NP_001015027.1	ILMN_1650407	0003800040	S	220	TGAAAGCAAAACTTGAGCGAAGCCGGCAGAGTGCAAGAGAGTGCCGGGCC	4	+	171761919-171761968	4q43	Rattus norvegicus cAMP responsive element binding protein-like 2 (Crebl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	MGC109304	MGC109304
Rattus norvegicus	RefSeq	GI_57114219	ILMN_265927	V1RA14	NM_001008898.1	NM_001008898.1		297442	57114219	NM_001008898.1	V1ra14	NP_001008898.1	ILMN_1649742	0003440575	S	20	GTCAAGGAATGATGAGTGAGATTCCGTTCTTTTCTCCTCCGCCACAGTTC	4	-	124819295-124819344	4q34	Rattus norvegicus vomeronasal 1 receptor, A14 (V1ra14), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657163-S	ILMN_69796	PLCD3_PREDICTED	XM_221004.4	XM_221004.4		287745	109489133	XM_221004.4	Plcd3_predicted	XP_221004.4	ILMN_1351746	0004610048	S	2207	GCGCACAAGGAGACGGACTATGTGCTCAATAATGGCTTCAACCCCTGCTG	10	-	92235440-92235456:92235537-92235569	10q32.1	PREDICTED: Rattus norvegicus phospholipase C, delta 3 (predicted) (Plcd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655405-S	ILMN_67864	LOC501184	XM_576613.1	XM_576613.1		501184	62655405	XM_576613.1	LOC501184	XP_576613.1	ILMN_1372801	0004590064	S	201	TCAGCAGTAGTCCGCTTCTGTTCATACCCCACACGTGGCCTTCCCTCAGG					PREDICTED: Rattus norvegicus similar to transcription factor INI (LOC501184), mRNA.					
Rattus norvegicus	RefSeq	GI_62718093-S	ILMN_65149	LOC501290	XM_576704.1	XM_576704.1		501290	62718093	XM_576704.1	LOC501290	XP_576704.1	ILMN_1358653	0002320450	S	608	GAATAGGACAGATCCCAAGAAGACAGCCCCCTGAAGAGTGAGTTTCTCTG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501290), mRNA.					
Rattus norvegicus	RefSeq	GI_62653242-S	ILMN_276043	RGD1561795_PREDICTED	XM_576356.1	XM_576356.1		500945	62653242	XM_576356.1	RGD1561795_predicted	XP_576356.1	ILMN_1351320	0004920435	S	392	GGAACTGCTCACTCCCACAAACCAAGTACTACTCGAGGCATGGAGGACTG	8	-	11561475-11561524	8q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700012B09 (predicted) (RGD1561795_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653110-S	ILMN_263484	RGD1561500_PREDICTED	XM_001066532.1	XM_001066532.1		315327	109482960	XM_001066532.1	RGD1561500_predicted	XP_001066532.1	ILMN_1368997	0004590021	S	2324	AGTTTGCACAGTGGTGGGACTGGGGAGGGATTCGTTGTCATGCTGCTGGG				7q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14800 (predicted) (RGD1561500_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.119611	ILMN_280123	ANGPTL4	NM_199115.2	NM_199115.2		362850	51036687	NM_199115.2	Angptl4	NP_954546.1	ILMN_1530352	0000520500	S	1799	TTCCAAGGCACAGCTCACAACATTCTTACAATAAAAACAACCTCAGAAAA				7q12	Rattus norvegicus angiopoietin-like 4 (Angptl4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence TAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence TAS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence TAS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence ISS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence TAS]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence ISS]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51036687-S	ILMN_280123	ANGPTL4	NM_199115.2	NM_199115.2		362850	51036687	NM_199115.2	Angptl4	NP_954546.1	ILMN_1360466	0005390524	S	1493	CATAACTGGAGTGACTGGAGGACCCCTTTTCCGTGTTGGGGTCTGCAAGC	7	-	16261926-16261975	7q12	Rattus norvegicus angiopoietin-like 4 (Angptl4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence TAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence TAS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence TAS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence ISS]; Any process that stops or reduces the activity of the enzyme lipoprotein lipase [goid 51005] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence TAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence TAS]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence ISS]; Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31377517-S	ILMN_301350	ALPI	NM_022665.2	NM_022665.2		24197	31377517	NM_022665.2	Alpi	NP_073156.2	ILMN_1358556	0003780332	S	1892	AACTCTGGGCTTCCGCTTCTCAACTGCAGTGGGAGGTACCGAACGGTATC	9	-	85893171-85893220	9q35	Rattus norvegicus alkaline phosphatase, intestinal (Alpi), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]	The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4) [goid 6793] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence TAS]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	S51097; Alp1	S51097; Alp1
Rattus norvegicus	RefSeq	GI_62667177-S	ILMN_269635	RGD1565734_PREDICTED	XM_001070442.1	XM_001070442.1		317252	109512081	XM_001070442.1	RGD1565734_predicted	XP_001070442.1	ILMN_1358393	0006220750	S	3470	CAGGAAACAAGCACAGCAGCCTGACCGAGTCTGAGCCTACTTCTCCAGCC				Xq31	PREDICTED: Rattus norvegicus similar to SNF2/RAD54 family protein (predicted) (RGD1565734_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17939351-A	ILMN_300858	DDIT4L	NM_080399.1	NM_080399.1		140582	17939351	NM_080399.1	Ddit4l	NP_536324.1	ILMN_1376258	0001340731	S	735	GCCCTGCGGCCTTCGGGGCTGTGTTATGCACGTGAACTTGGAAATTGAAA				2q44	Rattus norvegicus DNA-damage-inducible transcript 4-like (Ddit4l), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]		Smhs1	Smhs1
Rattus norvegicus	RefSeq	GI_62663446-S	ILMN_55223	LOC498733	XM_574009.1	XM_574009.1		498733	62663446	XM_574009.1	LOC498733	XP_574009.1	ILMN_1362294	0004610053	S	190	GCCGCTGCTCCTGCCTTCCAGCGTGCTTTTTGCATCGTTTGACATTTCTG					PREDICTED: Rattus norvegicus similar to CDNA sequence BC034664 (LOC498733), mRNA.					
Rattus norvegicus	RefSeq	GI_19705482-A	ILMN_270960	CLSTN2	NM_134377.1	NM_134377.1		171394	19705482	NM_134377.1	Clstn2	NP_599204.1	ILMN_1376976	0003140593	S	1296	CTTTGACCAGGCAGACACCTTTCGCCCCGCAGAGTTTCACTGGAAGCTGG				8q31	Rattus norvegicus calsyntenin 2 (Clstn2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence NAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cstn2; Cs2	Cstn2; Cs2
Rattus norvegicus	RefSeq	GI_62661984-S	ILMN_49464	RB1	XM_344434.3	XM_344434.3		24708	109501743	XM_344434.3	Rb1	XP_344435.3	ILMN_1371917	0000580050	S	2731	AAAGAAGTGCTGAAGGCGGCAATCCCCCCAAACCCCTGAAGAAGCTGCGC	15	-	53832602-53832651	15p11	PREDICTED: Rattus norvegicus retinoblastoma 1 (Rb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; Any process that modulates the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid [goid 43550] [evidence ISS]; Any process that modulates the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid [goid 43550] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence ISS]; Interacting selectively with a kinase, any enzyme that catalyzes the transfer of a phosphate group [goid 19900] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62079260-S	ILMN_297828	SYPL1	NM_001014263.1	NM_001014263.1		366595	62079260	NM_001014263.1	Sypl1	NP_001014285.1	ILMN_1373021	0006130288	S	777	AGTCCATCAAATACGTCAGCTTCTCATGGCCAAGGAGGTGTCCCACCCAC	6	+	51303808-51303857	6q16	Rattus norvegicus synaptophysin-like 1 (Sypl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62662055-S	ILMN_290509	PHGDHL1	NM_001034937.1	NM_001034937.1		361094	77917567	NM_001034937.1	Phgdhl1	NP_001030109.1	ILMN_1358486	0001500465	S	1098	AGAAGTTGCTTTAGAGACTAGCAGGGCTGAGCAGAGAGCAGGCGCTGGCC	15	+	107125062-107125111	15q25	Rattus norvegicus phosphoglycerate dehydrogenase like 1 (Phgdhl1), mRNA.				MGC125241	MGC125241
Rattus norvegicus	RefSeq	GI_62646802-S	ILMN_286808	RGD1565361_PREDICTED	XR_008591.1	XR_008591.1		500010	109473072	XR_008591.1	RGD1565361_predicted		ILMN_1356191	0003940446	S	3698	GGAAGCTGGGCACAACCGCCGCCACTTTAAGGCAGCAACTTTGGAGCTGA				4q13	PREDICTED: Rattus norvegicus similar to male-enhanced antigen-2 (predicted) (RGD1565361_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643145-S	ILMN_56285	LOC499566	XM_574890.1	XM_574890.1		499566	62643145	XM_574890.1	LOC499566	XP_574890.1	ILMN_1354657	0004070139	S	2232	CAGACCAGCAGTTTACACAATACCACTGCAGCAGAACAGCCCTGAGCTGG				2q23	PREDICTED: Rattus norvegicus similar to carbonic anhydrase 13 (LOC499566), mRNA.					
Rattus norvegicus	RefSeq	GI_62661850	ILMN_64477	LOC364311	XM_344336.2	XM_344336.2		364311	62661850	XM_344336.2	LOC364311	XP_344337.2	ILMN_1649893	0001850452	S	930	GTACTACTGTGCTCTGAGTGACACAGTGGCAGAAACCACAGCGGGAGCAG				15p14	PREDICTED: Rattus norvegicus similar to variable region-alpha RAV4.22 (LOC364311), mRNA.					
Rattus norvegicus	RefSeq	GI_27465542-S	ILMN_299887	CSN1S2B	NM_173106.1	NM_173106.1		286759	27465542	NM_173106.1	Csn1s2b	NP_775129.1	ILMN_1356888	0001660041	S	721	TGCAGGGCTGATGACTACTAAGGAAGGTTTCCCCTCTGCTCCTGTGTCAC	14	-	21773308-21773357	14p21	Rattus norvegicus casein alpha s2-like B (Csn1s2b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646888-S	ILMN_63370	WNT2	XM_575397.2	XM_575397.2		114487	109471799	XM_575397.2	Wnt2	XP_575397.1	ILMN_1362710	0006840341	S	1766	CTAACAGTTCAGAGTTCATGCTTCCCTCTGGGGGTCAGGGTAGGTATGGG	4	-	43649346-43649395	4q21	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 2 (Wnt2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655894-S	ILMN_293096	RGD1307155	NM_001037188.1	NM_001037188.1		302998	81295340	NM_001037188.1	RGD1307155	NP_001032265.1	ILMN_1362541	0000730519	S	230	TTGTCCAATGTGAAGGCTCCGCTGTACCTGGACGTGACCTGGAAGTGGGA	10	+	15140440-15140489	10q12	Rattus norvegicus similar to CG18661-PA (RGD1307155), mRNA.				MGC124879	MGC124879
Rattus norvegicus	RefSeq	GI_14091755-S	ILMN_300079	HMGA2	NM_032070.1	NM_032070.1		84017	14091755	NM_032070.1	Hmga2	NP_114459.1	ILMN_1349839	0000050288	S	554	CCCAGAGGAAGACCCAAAGGCAGCAAGAACAAGAGCCCCTCGAAAGCAGC				7q22	Rattus norvegicus high mobility group AT-hook 2 (Hmga2), mRNA.	A chromosome found in the nucleus of a eukaryotic cell [goid 228] [evidence ISS]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IMP]; Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33144] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]	Hmgic	Hmgic
Rattus norvegicus	RefSeq	GI_56912215-S	ILMN_270012	U2AF1L4	NM_001008775.1	NM_001008775.1		361542	56912215	NM_001008775.1	U2af1l4	NP_001008775.1	ILMN_1373359	0002900239	S	519	TGGGGGAATGTACCCGAGGTGGCTTCTGCAACTTTATGCACCTGCGACCC	1	+	85609745-85609748:85609928-85609973	1q21	Rattus norvegicus U2 small nuclear RNA auxiliary factor 1-like 4 (U2af1l4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556849-S	ILMN_287281	KLK6_PREDICTED	NM_001013067.1	NM_001013067.1		292866	61556849	NM_001013067.1	Klk6_predicted	NP_001013085.1	ILMN_1355594	0003440600	S	336	CCCTGGCTTTAACCTGGACATCATAAAGAACCACACCCGAAAACCTGGGA	1	+	94530192-94530241	1q22	Rattus norvegicus kallikrein 6 (predicted) (Klk6_predicted), mRNA.				Klk1c8; rGK-8; kallikrein; KLK8; rk8	Klk1c8; rGK-8; kallikrein; KLK8; rk8
Rattus norvegicus	RefSeq	GI_62662934-S	ILMN_58513	RGD1565675_PREDICTED	XM_214404.4	XM_214404.4		290925	109503565	XM_214404.4	RGD1565675_predicted	XP_214404.4	ILMN_1372837	0006760408	S	879	AGTTCCAAGGCATCGTTCCCAGTGACCTCCCAGTGTGGGCTACAGACAGG	16	+	80562202-80562251	16q12.5	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410022L05 (predicted) (RGD1565675_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639176-S	ILMN_286454	EXOSC5_PREDICTED	XM_218343.2	XM_218343.2		308441	62639176	XM_218343.2	Exosc5_predicted	XP_218343.2	ILMN_1373241	0007000427	S	945	GGCCTGGGTACAACCCTCTCTTCACCAGGACACCATTAAAAAGGGCTCAC	1	+	80876153-80876202	1q21	PREDICTED: Rattus norvegicus exosome component 5 (predicted) (Exosc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663062-S	ILMN_48493	LOC498676	XM_573958.1	XM_573958.1		498676	62663062	XM_573958.1	LOC498676	XP_573958.1	ILMN_1354997	0006370021	S	437	CATCCTGCAAAAGTACACAGGCCCGCGTTCTGCAACTTGAGGAGCCGCTC					PREDICTED: Rattus norvegicus similar to MGC82380 protein (LOC498676), mRNA.					
Rattus norvegicus	RefSeq	GI_9507126-S	ILMN_265390	SNIP	NM_019378.1	NM_019378.1		56029	9507126	NM_019378.1	Snip	NP_062251.1	ILMN_1361659	0001340154	S	4624	GACTGAAATGGGTAAGGACTTCTTGTCTGGGATGCTGGTGGTGGGGGTCC	10	-	86263345-86263394	10q31	Rattus norvegicus SNAP25-interacting protein (Snip), mRNA.	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51046] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650151	ILMN_66227	MELL1_PREDICTED	XM_233712.4	XM_233712.4		313755	109475906	XM_233712.4	Mell1_predicted	XP_233712.4	ILMN_1650446	0004810136	S	2060	AGACAACCAGAATGTGAACGGATTCAGCACCCTCGGGGAGAACATCGCCG	5	+	171701757-171701769:171701882-171701918	5q36	PREDICTED: Rattus norvegicus mel transforming oncogene-like 1 (predicted) (Mell1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980963-S	ILMN_296206	GNAI3	NM_013106.1	NM_013106.1		25643	6980963	NM_013106.1	Gnai3	NP_037238.1	ILMN_1364579	0001770131	S	2718	GGTTGGTGGTCAGAACTGCTTTGGGAAGCAAGCCACGGTGATCAGTGCCT	2	-	203668576-203668625	2q34	Rattus norvegicus guanine nucleotide binding protein (G protein), alpha inhibiting 3 (Gnai3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence TAS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]	GIP3A	GIP3A
Rattus norvegicus	RefSeq	GI_19424181-S	ILMN_283313	CABP1	NM_001033676.1	NM_001033676.1		171051	76056879	NM_001033676.1	Cabp1	NP_001028848.1	ILMN_1360836	0002970079	S	965	AGATAAGCACGAGCGAGCTGCGAGAGGCCATGAGGAAGCTCCTGGGTCAT	12	+	42720153-42720202	12q16	Rattus norvegicus calcium binding protein 1 (Cabp1), transcript variant 3, mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 15140941] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 15140941] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 15140941] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [pmid 15140941] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 15140941] [evidence IDA]	A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15140941] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62657151-S	ILMN_284460	HIGD1B_PREDICTED	XM_213488.2	XM_213488.2		287738	62657151	XM_213488.2	Higd1b_predicted	XP_213488.1	ILMN_1358293	0005220020	S	340	GTGATAGCAGCGTACAGGATTTACCGGCTGAAGGCTCGGGGTCCCACCAA	10	+	92010987-92011036	10q32.1	PREDICTED: Rattus norvegicus HIG1 domain family, member 1B (predicted) (Higd1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644114-S	ILMN_59877	LOC499683	XM_580004.1	XM_580004.1		499683	62644114	XM_580004.1	LOC499683	XP_580004.1	ILMN_1357478	0005270292	S	566	GAGATGTCACAGAATAAAGGACGCCGAGGGACAGAACCGAGCACGACGGC					PREDICTED: Rattus norvegicus LOC499683 (LOC499683), mRNA.					
Rattus norvegicus	RefSeq	GI_13929085-S	ILMN_301398	RPO1-4	NM_031772.1	NM_031772.1		83581	13929085	NM_031772.1	Rpo1-4	NP_113960.1	ILMN_1364722	0005050463	S	5726	CATCTCTCTGGGACCGCAGCAGCTCTACCTCACACAAGCCCCAAGTTTCC	4	+	105251103-105251152	4q33	Rattus norvegicus RNA polymerase 1-4 (Rpo1-4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template [goid 5736] [evidence IEA]; RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template [goid 5736] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]	Rpa1	Rpa1
Rattus norvegicus	RefSeq	GI_62650785-S	ILMN_271262	SAV1_PREDICTED	XM_001080429.1	XM_001080429.1		299116	109479479	XM_001080429.1	Sav1_predicted	XP_001080429.1	ILMN_1352453	0005220128	S	2296	CCATCAGGCTGGGCTACGTGCCAAAAGTGACAGTCAGGGATCCAATGAGG				6q24	PREDICTED: Rattus norvegicus salvador homolog 1 (Drosophila) (predicted) (Sav1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664949-S	ILMN_69630	LOC498921	XM_579885.1	XM_579885.1		498921	62664949	XM_579885.1	LOC498921	XP_579885.1	ILMN_1354424	0005570253	S	625	AGCTGCTGACCCTGACTAAGAATGCCCGCTCCAACACCGGCTACCAGAGT					PREDICTED: Rattus norvegicus LOC498921 (LOC498921), mRNA.					
Rattus norvegicus	RefSeq	GI_62644701-S	ILMN_275140	LOC688240	XR_009475.1	XR_009475.1		688240	109518862	XR_009475.1	LOC688240		ILMN_1354509	0005420161	S	1640	TCCCCTTCGTAGAAGTGCTGCTGACCCTGCGTACAAAAATGGGGAGCACT					PREDICTED: Rattus norvegicus similar to Notch-regulated ankyrin repeat protein (LOC688240), mRNA.					
Rattus norvegicus	RefSeq	GI_62663155-S	ILMN_267756	DAPK1_PREDICTED	XM_001060919.1	XM_001060919.1		306722	109505361	XM_001060919.1	Dapk1_predicted	XP_001060919.1	ILMN_1371791	0003450750	S	5062	CGGTGCATAGCACTTGGGTTCTACGCTGAGATCCTGGTTTGATCACTTCC				17p14	PREDICTED: Rattus norvegicus death associated protein kinase 1 (predicted) (Dapk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665894-S	ILMN_48501	RGD1309529_PREDICTED	XM_215378.4	XM_215378.4		294362	109509365	XM_215378.4	RGD1309529_predicted	XP_215378.2	ILMN_1353282	0003850095	S	610	TGGTTGGCCTCCCAGGTTCTGGTGTGGTTGGTACTTGCAAATCGCAGCTT	20	+	17999125-17999174	20p11	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 10, ERATO Doi 214, expressed (predicted) (RGD1309529_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652386-S	ILMN_66605	LOC315035	XM_235376.3	XM_235376.3		315035	62652386	XM_235376.3	LOC315035	XP_235376.3	ILMN_1358440	0001050347	S	7	GAGACCAACAGATTGAAAGCTCTGGCACTGTAGCCATCATAAATGACACG				7q22	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (LOC315035), mRNA.					
Rattus norvegicus	RefSeq	GI_47577050	ILMN_296549	OLR299	NM_001000236.1	NM_001000236.1		293598	47577050	NM_001000236.1	Olr299	NP_001000236.1	ILMN_1650319	0002030088	S	413	GGCCAATCTGTGTCCTGCTTGCAGGCATTGTGTGGGTGATTGGCATAGCT	1	-	200400027-200400076	1q41	Rattus norvegicus olfactory receptor 299 (Olr299), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-200550481-200549552_ORF; Olr299	ratchr1-200550481-200549552_ORF; Olr299
Rattus norvegicus	RefSeq	GI_62658766-S	ILMN_68063	LOC288604	XM_213758.3	XM_213758.3		288604	62658766	XM_213758.3	LOC288604	XP_213758.3	ILMN_1366493	0006130138	S	427	TGTTGGTGGAGCCTCTGACTAGCTTTGACCTCACAGGGCCCTGCTCCCCC				12q12	PREDICTED: Rattus norvegicus similar to Williams-Beuren syndrome critical region protein 28 isoform A (LOC288604), mRNA.					
Rattus norvegicus	RefSeq	GI_62654176-S	ILMN_66971	LOC501042	XM_576455.1	XM_576455.1		501042	62654176	XM_576455.1	LOC501042	XP_576455.1	ILMN_1366072	0002650273	S	252	CTCCGCACTGACTTCCCTTCAGGGGAAAGAAAGGGGACACACAGGAAAGC				8q31	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S25 (LOC501042), mRNA.					
Rattus norvegicus	RefSeq	GI_62653388-S	ILMN_50370	RGD1562937_PREDICTED	XM_578706.2	XM_578706.2		503183	109483066	XM_578706.2	RGD1562937_predicted	XP_578706.1	ILMN_1359810	0006290300	S	221	GAACCCACTTCGGTGGTGGCACGACAGCTGGCTCTGGCATGATTTATGAT	8	+	11906313-11906362	8q12	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (predicted) (RGD1562937_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661494-S	ILMN_263527	RGD1307170_PREDICTED	XM_001056534.1	XM_001056534.1		305898	109502417	XM_001056534.1	RGD1307170_predicted	XP_001056534.1	ILMN_1368563	0003710524	S	5447	AAAGGCCAGCGAGAAGGCTGAGAATAGGCGTTTCAAGAGGGAGAGCCGGG				15p13	PREDICTED: Rattus norvegicus similar to KIAA1305 protein (predicted) (RGD1307170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654822-S	ILMN_53850	LOC501120	XM_580162.1	XM_580162.1		501120	62654822	XM_580162.1	LOC501120	XP_580162.1	ILMN_1366797	0003140162	S	335	TGACTGTCCGTTGCTGGGTCCTCCCAACAAAATTCGGCTCGTGGAACGTC					PREDICTED: Rattus norvegicus LOC501120 (LOC501120), mRNA.					
Rattus norvegicus	RefSeq	GI_34870900-S	ILMN_302235	RGD1563049_PREDICTED	XM_238409.2	XM_238409.2		298493	34870900	XM_238409.2	RGD1563049_predicted	XP_238409.2	ILMN_1353030	0001340279	S	115	GCATCCAGAGACCGAGATGTTGATGCTCAGAGGGAGCTGGGATCACCAAG	5	+	140455222-140455237:140455238-140455271	5q36	PREDICTED: Rattus norvegicus RGD1563049 (predicted) (RGD1563049_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661516-S	ILMN_69715	MCPT1L3	XM_573785.1	XM_573785.1		408209	62661516	XM_573785.1	Mcpt1l3	XP_573785.1	ILMN_1354789	0005340463	S	414	CCCCGGATTCATACAGTCCTAAGTGCAATATATGTGCTGCTGAAGCGAGC				15p12	PREDICTED: Rattus norvegicus mast cell protease 1-like 3 (Mcpt1l3), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57977290-S	ILMN_290394	RSD6	NM_022263.2	NM_022263.2		64029	57977290	NM_022263.2	Rsd6	NP_071599.2	ILMN_1369353	0007000093	S	981	GTCACTGCCTCCGAAACTAACAGCGTCGTCGTGGAGGAACCACACGTTGA	14	-	21617316-21617365	14p21	Rattus norvegicus RSD-6 (Rsd6), mRNA.				MGC94008	MGC94008
Rattus norvegicus	RefSeq	GI_62663005-S	ILMN_65006	LOC498670	XM_573953.1	XM_573953.1		498670	62663005	XM_573953.1	LOC498670	XP_573953.1	ILMN_1371893	0003140575	S	2	GGAAGACGTAGATCACAGTGCAGGGGACCAAGTAAAACTCTTCAACGAAC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498670), mRNA.					
Rattus norvegicus	RefSeq	GI_62651529-S	ILMN_68461	LOC366764	XM_345751.2	XM_345751.2		366764	62651529	XM_345751.2	LOC366764	XP_345752.2	ILMN_1373120	0001660427	S	1319	CATGCAATTGGTCCACCATACTCCAGAGAAGGGGCTAGAATGGGTAGCTG					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC366764), mRNA.					
Rattus norvegicus	RefSeq	GI_62650247-S	ILMN_265369	ARL6IP2	XM_001063138.1	XM_001063138.1		298757	109478943	XM_001063138.1	Arl6ip2	XP_001063138.1	ILMN_1363949	0004200315	S	2955	CCTGCCCTGAACGGAGATGCATTATCTGGGAAACTGAGCTGTCTTTGCAG				6q11	PREDICTED: Rattus norvegicus ADP-ribosylation factor-like 6 interacting protein 2 (Arl6ip2), mRNA.					
Rattus norvegicus	RefSeq	GI_62638588-S	ILMN_299499	LOC688464	XM_001067063.1	XM_001067063.1		688464	109457843	XM_001067063.1	LOC688464	XP_001067063.1	ILMN_1351880	0002360148	S	11	CCACGCCCTTCATTAGTTCCTGAGGGGATTTTTCAGAACAGAGGTTATGG	1	-	50802620-50802624:50802625-50802669	1q12	PREDICTED: Rattus norvegicus hypothetical protein LOC688464 (LOC688464), mRNA.					
Rattus norvegicus	RefSeq	GI_62661886-S	ILMN_66356	LOC501987	XM_224104.3	XM_224104.3		501987	62661886	XM_224104.3	LOC501987	XP_224104.3	ILMN_1369463	0006980025	S	3265	GTGCTCTGAGCGCACAGCGGGTGAGAGGAAATAATGTGGAGCAGAGTCCA					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha-chain variable region (LOC501987), mRNA.					
Rattus norvegicus	RefSeq	GI_27699367-S	ILMN_66356	LOC501987	XM_224104.3	XM_224104.3		501987	62661886	XM_224104.3	LOC501987	XP_224104.3	ILMN_1371022	0000840504	S	3366	TCTATTGCCATGACAACTGTGCAGTGGTTCCGACAGGATCCCAGGGGCAG					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha-chain variable region (LOC501987), mRNA.					
Rattus norvegicus	RefSeq	GI_62659329-S	ILMN_273024	LOC498231	XM_001061042.1	XM_001061042.1		498231	109498636	XM_001061042.1	LOC498231	XP_001061042.1	ILMN_2038902	0001440424	S	329	GGGCCAATGGGGGGCGAGAGAAGAAAGAGACCAAGCAAGATTCCATTGTC				13q13	PREDICTED: Rattus norvegicus LRRGT00144 (LOC498231), mRNA.					
Rattus norvegicus	RefSeq	GI_62648138-S	ILMN_263297	PEX5_PREDICTED	XM_001062081.1	XM_001062081.1		312703	109474192	XM_001062081.1	Pex5_predicted	XP_001062081.1	ILMN_1351267	0003990546	S	1993	CACCGTGAGGCCGTGGAACACTTTCTGGAGGCCCTGAACATGCAGAGGAA				4q42	PREDICTED: Rattus norvegicus peroxisome biogenesis factor 5 (predicted) (Pex5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645737-S	ILMN_50432	LOC502657	XM_578151.1	XM_578151.1		502657	62645737	XM_578151.1	LOC502657	XP_578151.1	ILMN_1358903	0000520593	S	4	CGCGCTGGGAACACTGTGGACCCTTTCAGCTTTGCCATGGTAACGTTTCC				3q32	PREDICTED: Rattus norvegicus similar to cytochrome c oxidase subunit IV (LOC502657), mRNA.					
Rattus norvegicus	RefSeq	GI_62657920-S	ILMN_272390	RGD1305539_PREDICTED	XM_001069633.1	XM_001069633.1		303920	109494425	XM_001069633.1	RGD1305539_predicted	XP_001069633.1	ILMN_1354254	0006290066	S	2229	GGAAGAGCAGAGGTCGTTCCTTGAGCAGACTGAGACCTCAAACTCTGACG				11q21	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1305539_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657750-A	ILMN_285857	DCBLD2	NM_130419.1	NM_130419.1		155696	18426845	NM_130419.1	Dcbld2	NP_569103.1	ILMN_1376806	0004670538	S	2247	GTGCCGCAGAGCACCCAGGAAGCATCAGGAGCAGGAAGGGATGAGAAATT				11q12	Rattus norvegicus discoidin, CUB and LCCL domain containing 2 (Dcbld2), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]		Esdn	Esdn
Rattus norvegicus	RefSeq	GI_62638979-S	ILMN_281961	RGD1559700_PREDICTED	XR_008247.1	XR_008247.1		502290	109461029	XR_008247.1	RGD1559700_predicted		ILMN_1367892	0003360717	S	1547	CATTCTCTGTGTGCAGTGAAGACTGTGGTCCAGGATTCCGAAGGTTCTGG				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1559700_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643045-S	ILMN_51524	LOC499540	XM_574863.1	XM_574863.1		499540	62643045	XM_574863.1	LOC499540	XP_574863.1	ILMN_1356410	0004780438	S	347	GCAGCAAACGGCCCTGAAGCAGAAATCCAGTGCTGTGAAATCAGTCCTGT					PREDICTED: Rattus norvegicus similar to hypothetical protein D12Ertd771e (LOC499540), mRNA.					
Rattus norvegicus	RefSeq	GI_50593105-S	ILMN_291118	ATP6V0E2	NM_001002253.1	NM_001002253.1		436582	50593105	NM_001002253.1	Atp6v0e2	NP_001002253.1	ILMN_1358980	0005340450	S	637	GCTGGACCTGCTGGGATCTGTTTTCATCCAGGGAGCAGAAGGCAGGACTC	4	+	76624751-76624800	4q24	Rattus norvegicus ATPase, H+ transporting V0 subunit e2 (Atp6v0e2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis [goid 15991] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	NM9.2	NM9.2
Rattus norvegicus	RefSeq	GI_62642274-S	ILMN_56643	LOC499357	XM_579951.1	XM_579951.1		499357	62642274	XM_579951.1	LOC499357	XP_579951.1	ILMN_1350831	0005690692	S	561	GCCCAGCTTCTGCCTTGAACTCTGTGCTTCTTGGTGGGTGCCGTGGACTA					PREDICTED: Rattus norvegicus LOC499357 (LOC499357), mRNA.					
Rattus norvegicus	RefSeq	GI_62655633-S	ILMN_278681	RGD1563874_PREDICTED	XM_001078291.1	XM_001078291.1		302900	109489658	XM_001078291.1	RGD1563874_predicted	XP_001078291.1	ILMN_1368586	0000430500	S	1159	GCTGGGTTCAATTCCAAGCACCCATGTACCAGCTCACAACTGCCACCAGG				10q11	PREDICTED: Rattus norvegicus RGD1563874 (predicted) (RGD1563874_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718066-S	ILMN_267862	LOC363332	XM_001059416.1	XM_001059416.1		363332	109486575	XM_001059416.1	LOC363332	XP_001059416.1	ILMN_1357021	0004610121	S	1184	TGTGCTCTTCCAGTTTGTGCGAGAGGCGCTACAGAACGACTGGCTGCCCT					PREDICTED: Rattus norvegicus similar to UBX domain containing 1 (LOC363332), mRNA.					
Rattus norvegicus	RefSeq	GI_62648118-S	ILMN_53129	MFAP5_PREDICTED	XM_342750.3	XM_342750.3		362429	109472594	XM_342750.3	Mfap5_predicted	XP_342751.1	ILMN_1365298	0006520014	S	409	TCCCGGCTTGTCTGTAAAGAACACGAGGCCATGAAAGATGAGCTTTGCCG	4	+	158979809-158979845:158981622-158981634	4q42	PREDICTED: Rattus norvegicus microfibrillar associated protein 5 (predicted) (Mfap5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648452-S	ILMN_69163	RGD1309621	XM_229579.4	XM_229579.4		316982	109472856	XM_229579.4	RGD1309621	XP_229579.4	ILMN_1370940	0000630324	S	3981	GGCCCGTACGAGTAATGAGCACAGCCAGGTGCCTCTTCAGGTAAAGGAAC	4	+	186784171-186784220	4q44	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10652 (RGD1309621), mRNA.					
Rattus norvegicus	RefSeq	GI_62641764-I	ILMN_57195	SCYL1_PREDICTED	XM_574604.1	XM_574604.1		293684	62641764	XM_574604.1	Scyl1_predicted	XP_574604.1	ILMN_1375876	0002030632	S	1036	CCCAGGAATCTGCTTGTACTCTAGCCTCCTCCCTGACTTCCAGTGGCTCG				1q43	PREDICTED: Rattus norvegicus SCY1-like 1 (S. cerevisiae) (predicted) (Scyl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28461144-S	ILMN_274841	AGRN	NM_175754.1	NM_175754.1		25592	28461144	NM_175754.1	Agrn	NP_786930.1	ILMN_1355654	0002450278	S	6999	GTTACTGCCGGGTGTCCAGCCAAGGGCAGGTACTAGAATGGCAGAGATGA	5	-	172999595-172999644	5q36	Rattus norvegicus agrin (Agrn), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the plasma membrane [goid 7009] [evidence ISS]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence IMP]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence TAS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptic growth at neuromuscular junctions [goid 8582] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IEA]; The chemical reactions and pathways involving neurotransmitter receptors [goid 45213] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]	Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is changed [goid 30548] [evidence ISS]; Interacting selectively with laminins, glycoproteins that are major constituents of the basement membrane of cells [goid 43236] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	AGR	AGR
Rattus norvegicus	RefSeq	GI_62653507-S	ILMN_283148	SIAE_PREDICTED	XM_001057989.1	XM_001057989.1		363045	109484495	XM_001057989.1	Siae_predicted	XP_001057989.1	ILMN_1366977	0000460463	S	1512	CCCTGATCTTGGATCTCAGTGCTTGTCTGGGCACCGTGGATGCTGTTCGC				8q21	PREDICTED: Rattus norvegicus sialic acid acetylesterase (predicted), transcript variant 2 (Siae_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667254-S	ILMN_294465	RGD1565344_PREDICTED	XR_008618.1	XR_008618.1		308654	109512338	XR_008618.1	RGD1565344_predicted		ILMN_1372450	0006590746	S	2092	GAAGACGACACCTGGAGGAAGGGAAAGAAAGGCCAGAGAAGGAGCAGTCC				Xq34	PREDICTED: Rattus norvegicus similar to zinc finger, matrin type 1 (predicted) (RGD1565344_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660727-S	ILMN_284165	SEC14L3	XM_341244.2	XM_341244.2		64543	62660727	XM_341244.2	Sec14l3	XP_341245.2	ILMN_1374476	0001230364	S	1203	AGGGCATGCAGAAGTACGATGAGGAGCTCACCCCTATCTAGGTGGACCCC	14	+	84709736-84709776:84709777-84709785	14q21	PREDICTED: Rattus norvegicus SEC14-like 3 (S. cerevisiae) (Sec14l3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656622-S	ILMN_271228	BLMH	NM_001034163.1	NM_001034163.1		287552	77681959	NM_001034163.1	Blmh	NP_001029335.1	ILMN_1359186	0006620546	S	2179	TAACGTCTGTCTCTGTGTTGGGGGTTGGGTGGGGAGAAAAAGTGATGCTC	10	-	67195338-67195387	10q26	Rattus norvegicus bleomycin hydrolase (Blmh), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718145-S	ILMN_277115	LOC367480	XM_001055497.1	XM_001055497.1		367480	109460975	XM_001055497.1	LOC367480	XP_001055497.1	ILMN_1349406	0003940300	S	2343	TAGCACCAGGGGCAGGGTTATGGTTGCTGTTGAGATCTTCTCCATCTTGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN2) (LOC367480), mRNA.					
Rattus norvegicus	RefSeq	GI_62657138-S	ILMN_275337	RGD1304758	NM_001031651.1	NM_001031651.1		303567	72255528	NM_001031651.1	RGD1304758	NP_001026821.1	ILMN_1363208	0001850685	S	2099	GCCCAATTCCGAGGATGAGTTCTAGGTATAGATTGCCCTCCCCTAGGCCC	10	+	91368787-91368836	10q32.1	Rattus norvegicus similar to RIKEN cDNA 2010008E23 gene (RGD1304758), mRNA.				MGC116065	MGC116065
Rattus norvegicus	RefSeq	GI_40254727-S	ILMN_285017	PPM1G	NM_147209.2	NM_147209.2		259229	40254727	NM_147209.2	Ppm1g	NP_671742.1	ILMN_1351052	0000060440	S	1826	TTAGCCTTAGCAGTGGGTATGAGGTGTGTAGGGGGCTGGGCGGCTTTCCT				6q14	Rattus norvegicus protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform (Ppm1g), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666500-S	ILMN_295067	RGD1563945_PREDICTED	XM_001056752.1	XM_001056752.1		299305	109511471	XM_001056752.1	RGD1563945_predicted	XP_001056752.1	ILMN_1371595	0000770301	S	4172	GCCAGCAGGTTGCCAGTGTCCTTTCATGCTTTTGAATTCTGAGGGAGGTG				Xq12	PREDICTED: Rattus norvegicus similar to mKIAA0215 protein (predicted) (RGD1563945_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652228	ILMN_58591	PPM1H_PREDICTED	XM_235200.3	XM_235200.3		314897	62652228	XM_235200.3	Ppm1h_predicted	XP_235200.3	ILMN_1650530	0006980520	S	2485	GCACTTGGGATGTGGAGCAAGGGGATCAGACGTTCAAGGGCATCCTCAGC				7q22	PREDICTED: Rattus norvegicus protein phosphatase 1H (PP2C domain containing) (predicted) (Ppm1h_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11225271-S	ILMN_288359	SSTR2	NM_019348.1	NM_019348.1		54305	11225271	NM_019348.1	Sstr2	NP_062221.1	ILMN_1362580	0002760398	S	1999	TCTAAGCTTCCAGCATCCCTCTTGCATGGGCCTTTCCCAGACCCAGGAGG	10	+	103254340-103254389	10q32.1	Rattus norvegicus somatostatin receptor 2 (Sstr2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IDA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IEA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with somatostatin to initiate a change in cell activity [goid 4994] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10551867] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [pmid 10551867] [evidence IPI]	Smstr2	Smstr2
Rattus norvegicus	RefSeq	GI_46048428-S	ILMN_274593	CFDP1	NM_199378.2	NM_199378.2		292027	46048428	NM_199378.2	Cfdp1	NP_955410.1	ILMN_1366130	0005700309	S	1081	TCTCCAGTGGTCTCCGTCATGTTTCCAGCAAGTCCCTTTTTCTACGTTGC	19	-	41703669-41703718	19q12	Rattus norvegicus craniofacial development protein 1 (Cfdp1), mRNA.		A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_34853245-S	ILMN_285779	BVES	XM_001066786.1	XM_001066786.1		365603	109510265	XM_001066786.1	Bves	XP_001066786.1	ILMN_1350157	0001410465	S	1089	CGAGGAAGGGCTAGAAGATGACGATGAGGTCTTTGTGCCGGTGTCTCCCG					PREDICTED: Rattus norvegicus blood vessel epicardial substance (Bves), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62661758-S	ILMN_265745	SUGT1	XM_001073449.1	XM_001073449.1		290408	109502764	XM_001073449.1	Sugt1	XP_001073449.1	ILMN_1350869	0002340619	S	828	GCTAGAGGGACAAGGAGATGTGCCCGCCCCGAAACAGTTCACAGCAGATG				15q12	PREDICTED: Rattus norvegicus SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (Sugt1), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758725-S	ILMN_266083	SLC17A7	NM_053859.1	NM_053859.1		116638	16758725	NM_053859.1	Slc17a7	NP_446311.1	ILMN_1364967	0002450020	S	1823	GGTGGGCAGTTTCCAGGACCTCCACTCGATACACCTCTAGCCTAAACGGC	1	+	95651754-95651803	1q22	Rattus norvegicus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 (Slc17a7), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; A synapse in which an action potential in the presynaptic cell increases the probability of an action potential occurring in the postsynaptic cell [goid 60076] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [pmid 15681343] [evidence IDA]	The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IDA]; The process of binding or confining a neurotransmitter such that it is separated from other components of a biological system [goid 42137] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The process of binding or confining a neurotransmitter such that it is separated from other components of a biological system [goid 42137] [evidence IEA]	Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport [goid 5315] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + inorganic phosphate(out) = Na+(in) + inorganic phosphate(in) [goid 15319] [evidence ISS];  [goid 15321] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + inorganic phosphate(out) = Na+(in) + inorganic phosphate(in) [goid 15319] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Vglut1; BNPI	Vglut1; BNPI
Rattus norvegicus	RefSeq	GI_62641562-S	ILMN_262771	LOC680582	XM_001057880.1	XM_001057880.1		680582	109459561	XM_001057880.1	LOC680582	XP_001057880.1	ILMN_1353946	0003390440	S	2705	CACAGAGGTCCTTGGAGAGGCCCATCGAGACTGCCATCCTTCTGAGTCTG	1	-	199421245-199421294	1q41	PREDICTED: Rattus norvegicus hypothetical protein LOC680582 (LOC680582), mRNA.					
Rattus norvegicus	RefSeq	GI_62666319-S	ILMN_68754	RGD1563384_PREDICTED	XM_228392.4	XM_228392.4		309912	109509652	XM_228392.4	RGD1563384_predicted	XP_228392.4	ILMN_1355800	0000940112	S	1802	TCCTGGGGTCAGTTCCCGGAGCCCACACAAAGGAAGGGGAAAGAACTGAT	20	+	47857490-47857539	20q13	PREDICTED: Rattus norvegicus similar to NOGO-interacting mitochondrial protein (predicted) (RGD1563384_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665478-S	ILMN_276758	CLECSF1_PREDICTED	XM_001078120.1	XM_001078120.1		365009	109508951	XM_001078120.1	Clecsf1_predicted	XP_001078120.1	ILMN_1366108	0006660195	S	321	TTCCGACGAAATCAATGCCCTCCGAGACTACAGTAAGAGGAGCCTGCCAG				19q12	PREDICTED: Rattus norvegicus C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 1 (cartilage-derived) (predicted) (Clecsf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653073-S	ILMN_55657	LOC500932	XM_576344.1	XM_576344.1		500932	62653073	XM_576344.1	LOC500932	XP_576344.1	ILMN_1369489	0000520441	S	373	TACCGGGAGATGGAGCATTTGAGACAGGTACGGGCCAGGGACAAACACCC					PREDICTED: Rattus norvegicus similar to cervical cancer receptor (LOC500932), mRNA.					
Rattus norvegicus	RefSeq	GI_62651414-S	ILMN_282656	DNAH11	XM_001061747.1	XM_001061747.1		117253	109480079	XM_001061747.1	Dnah11	XP_001061747.1	ILMN_1367394	0005290082	S	13703	CGGCCTTGGCACAACTTGCATTCTTCCTGCTTCAGCCAGACCCAGTGAGC				6q33	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 11 (Dnah11), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A dynein complex found in eukaryotic cilia and flagella; the motor domain heads interact with adjacent microtubules to generate a sliding force which in converted to a bending motion. May contain two or three dynein heavy chains as well as several light chains [goid 5858] [evidence ISS]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence ISS]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Cell motility due to movement of cilia or flagella [goid 1539] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence ISS]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647058-S	ILMN_48543	LOC502735	XM_578234.1	XM_578234.1		502735	62647058	XM_578234.1	LOC502735	XP_578234.1	ILMN_1363811	0006370279	S	238	TCCAGGGAGGGGCTGCAGGGAAGACAGGAACCGTGGCAAAAAGAATACCA					PREDICTED: Rattus norvegicus similar to cytochrome c oxidase, subunit VIc (LOC502735), mRNA.					
Rattus norvegicus	RefSeq	GI_57163996-S	ILMN_292569	WFDC15B	NM_001009179.1	NM_001009179.1		408230	57163996	NM_001009179.1	Wfdc15b	NP_001009179.1	ILMN_1358162	0000520364	S	137	GAGGCTGCAGTGGCTCCCTAAAGTGTTGCTTCTACTACTGTCAGATGCGC	3	-	155159883-155159932	3q42	Rattus norvegicus WAP four-disulfide core domain 15B (Wfdc15b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 30414] [evidence IEA]	Wfdc14; Serpina1c; Skalp	Wfdc14; Serpina1c; Skalp
Rattus norvegicus	RefSeq	GI_47577376-S	ILMN_289588	OLR440	NM_001000282.1	NM_001000282.1		295711	47577376	NM_001000282.1	Olr440	NP_001000282.1	ILMN_1364106	0002570162	S	395	ATCCTATACTCATGTCCCGAAAAGTCTGCATCCAGATGGTAGCTGGCTCC	3	-	68626402-68626451	3q24	Rattus norvegicus olfactory receptor 440 (Olr440), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr440	Olr440
Rattus norvegicus	RefSeq	GI_16923983-S	ILMN_270495	PRPSAP2	NM_057131.1	NM_057131.1		117272	16923983	NM_057131.1	Prpsap2	NP_476472.1	ILMN_1369270	0004230441	S	1273	CCTCTCAGAAGCCATCCGCCGAATTCACAACGGGGAGTCCATGTCCTACC	10	-	47890923-47890972	10q23	Rattus norvegicus phosphoribosyl pyrophosphate synthetase-associated protein 2 (Prpsap2), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IEA]	MGC93257; Pap41	MGC93257; Pap41
Rattus norvegicus	RefSeq	GI_62663388-S	ILMN_51762	CD83_PREDICTED	XM_341509.3	XM_341509.3		361226	109504774	XM_341509.3	Cd83_predicted	XP_341510.2	ILMN_1358082	0002450131	S	1961	CTATGAGAGTGAACGGGATGCTGAGCGGATACCGTGTGCTTGCCTCTCAG	17	-	26705681-26705730	17p12	PREDICTED: Rattus norvegicus CD83 antigen (predicted) (Cd83_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658863-S	ILMN_52220	LRRC43	XM_213813.4	XM_213813.4		288751	109495887	XM_213813.4	Lrrc43	XP_213813.4	ILMN_1369237	0006370601	S	1652	ACAAAGGCCCGAGGAAGAAAAAGGAGCCACCCAGAGAGCTGCGCCAGGAT	12	-	34216635-34216684	12q16	PREDICTED: Rattus norvegicus leucine rich repeat containing 43 (Lrrc43), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.25048	ILMN_161302	RN.25048	Rn.25048		Rn.25048		18184733	BM384680			ILMN_1530185	0002260072	S	401	TGTTAGCTCTACATTTGTTTTTGGTTTTTCATTTTGATGAGATACTTGAC					UI-R-DY0-ckl-n-05-0-UI.s1 UI-R-DY0 Rattus norvegicus cDNA clone UI-R-DY0-ckl-n-05-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_34851926-S	ILMN_272570	EXOSC6_PREDICTED	XM_001077520.1	XM_001077520.1		307850	109508905	XM_001077520.1	Exosc6_predicted	XP_001077520.1	ILMN_1368866	0006510725	S	1114	TTATTGGGCAGTGGGGAAGGCGGCCAGACTGAGAGTTGGACCGATGCGGT				19q12	PREDICTED: Rattus norvegicus exosome component 6 (predicted) (Exosc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643573-S	ILMN_54080	LOC499638	XM_574960.1	XM_574960.1		499638	62643573	XM_574960.1	LOC499638	XP_574960.1	ILMN_1350345	0006020110	S	153	GTAAAACTAGAGATAATCTGATGGCGAGAGGCAAGCGCAGGAACCCAAGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499638), mRNA.					
Rattus norvegicus	RefSeq	GI_62655697-S	ILMN_66885	LOC363542	XM_343859.2	XM_343859.2		363542	62655697	XM_343859.2	LOC363542	XP_343860.2	ILMN_1355079	0000770091	S	1089	GGCCCAGGGGAAGACATGAAAACTTACTGCTGCCCTTCAGTGGTGCCCAG				10q12	PREDICTED: Rattus norvegicus similar to Hypothetical protein FLJ25410 (LOC363542), mRNA.					
Rattus norvegicus	RefSeq	GI_62667506-S	ILMN_267792	FMR1NB_PREDICTED	XM_001055042.1	XM_001055042.1		293918	109462298	XM_001055042.1	Fmr1nb_predicted	XP_001055042.1	ILMN_1359754	0007050519	S	606	TCCTGGGATTTCTGCCTGTGTACTGCTGTTCCCTTTGCCGGAGGAGGAAG				Xq37	PREDICTED: Rattus norvegicus fragile X mental retardation 1 neighbor (predicted) (Fmr1nb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647834-S	ILMN_275038	WNT7A	XM_001073379.1	XM_001073379.1		114850	109473875	XM_001073379.1	Wnt7a	XP_001073379.1	ILMN_1365179	0003440168	S	1450	GTCTTTTCTGCTGAGGGGGAAGGGTATTCTGGGTTTCCCACAGACTCCTG				4q34	PREDICTED: Rattus norvegicus wingless-related MMTV integration site 7A, transcript variant 2 (Wnt7a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar granule cell. Differentiation includes the processes involved in commitment of a neuroblast to a granule cell fate. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21707] [evidence IEA]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar granule cell. Differentiation includes the processes involved in commitment of a neuroblast to a granule cell fate. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21707] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence IEA]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35136] [evidence ISS]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence ISS]; The process by which the anatomical structures of the skin are generated and organized. Morphogenesis pertains to the creation of form. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43589] [evidence IEA]; The process by which the anatomical structures of the skin are generated and organized. Morphogenesis pertains to the creation of form. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43589] [evidence ISS]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence IEA]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar granule cell. Differentiation includes the processes involved in commitment of a neuroblast to a granule cell fate. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21707] [evidence IEA]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence IEA]; The process by which the anatomical structures of the skin are generated and organized. Morphogenesis pertains to the creation of form. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43589] [evidence IEA]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27229313-S	ILMN_293534	FIBP	NM_172334.1	NM_172334.1		282837	27229313	NM_172334.1	Fibp	NP_758837.1	ILMN_1367710	0003780600	S	915	GTGGACCTTGTGGAGAAGTTTGTGGAACCCTGCCGCTTTGACCACTGGCC	1	+	208107695-208107711:208107802-208107834	1q43	Rattus norvegicus fibroblast growth factor (acidic) intracellular binding protein (Fibp), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with fibroblast growth factor [goid 17134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661970-S	ILMN_48817	LOC364408	XM_344424.2	XM_344424.2		364408	62661970	XM_344424.2	LOC364408	XP_344425.2	ILMN_1370720	0002060008	S	1224	CTAGGGGGTCCGGGTTCCCCGGGCTTCAATGATTGGGGAGGGAAGATAAA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L6 (Neoplasm-related protein C140) (LOC364408), mRNA.					
Rattus norvegicus	RefSeq	GI_47576840-S	ILMN_301616	OLR206	NM_001000193.1	NM_001000193.1		293353	47576840	NM_001000193.1	Olr206	NP_001000193.1	ILMN_1359660	0001400315	S	519	GGTCAATCACCTGTTCTGTGAGATACCCCCATTGCTGAAGCTGGCCTGTG	1	-	163893081-163893130	1q33	Rattus norvegicus olfactory receptor 206 (Olr206), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr206	Olr206
Rattus norvegicus	RefSeq	GI_9506990-S	ILMN_49491	MAPK13	NM_019231.2	NM_019231.2		29513	82524632	NM_019231.2	Mapk13	NP_062104.2	ILMN_1356077	0000730070	S	1415	CCTTCCTGGAGGGTTGGGACCAAGGATATGTCAGTCAGGCTGAGGGCCTT	20	+	7063958-7064007	20p12	Rattus norvegicus mitogen activated protein kinase 13 (Mapk13), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IDA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 8339] [evidence IEA];  [goid 8339] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Prkm13; MGC124619	Prkm13; MGC124619
Rattus norvegicus	RefSeq	GI_62650920-S	ILMN_278477	RGD1560681_PREDICTED	XR_009419.1	XR_009419.1		500679	109479561	XR_009419.1	RGD1560681_predicted		ILMN_1365020	0001940433	S	510	CACAGAGTCTGCGTTTACTGCTGAGAGACTGGTCGAGATCGCAGAATCCC				6q24	PREDICTED: Rattus norvegicus similar to RAD51-like 1 (predicted) (RGD1560681_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647268-S	ILMN_58835	LOC297099	XM_216149.3	XM_216149.3		297099	62647268	XM_216149.3	LOC297099	XP_216149.3	ILMN_1367919	0005130722	S	648	TTCTCTCGAGCCTGCCTTCGTTCTCGATGGGTGCCTCTGAATCTAGGGCC					PREDICTED: Rattus norvegicus similar to Hoxa-9 (predicted) (LOC297099), mRNA.					
Rattus norvegicus	RefSeq	GI_46048486-S	ILMN_288744	MID1IP1	NM_206950.1	NM_206950.1		404280	46048486	NM_206950.1	Mid1ip1	NP_996833.1	ILMN_1352005	0004780538	S	1651	TCCCCCACCCCGTGTGTGTAAACTGGTGACGTGCCAGCTAGGATGAAGCT	X	-	24205880-24205929	Xq13	Rattus norvegicus MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)) (Mid1ip1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]	MGC72582	MGC72582
Rattus norvegicus	RefSeq	GI_56090254-S	ILMN_273697	SERTAD1	NM_001007735.1	NM_001007735.1		361526	56090254	NM_001007735.1	Sertad1	NP_001007736.1	ILMN_1365196	0000780239	S	1048	GCAATGGTGTTTGGGCTAGGCTGGGGGTTGGACTGGGATAATAGTCTGGG	1	+	82569128-82569177	1q21	Rattus norvegicus SERTA domain containing 1 (Sertad1), mRNA.		Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]	MGC72577	MGC72577
Rattus norvegicus	RefSeq	GI_62643759	ILMN_275726	LOC499653	NM_001024804.1	NM_001024804.1		499653	71067092	NM_001024804.1	LOC499653	NP_001019975.1	ILMN_1649966	0006040020	S	2986	GATCCAGCCACATCAGTGGAAGCCGCCTATTGAGAAAGAAGAACACCGGC	2	+	180958179-180958228	2q34	Rattus norvegicus Dingo protein (LOC499653), transcript variant 2, mRNA.					
Rattus norvegicus	RefSeq	GI_54400725-S	ILMN_263657	ABTB1	NM_001005902.1	NM_001005902.1		297432	54400725	NM_001005902.1	Abtb1	NP_001005902.1	ILMN_1368232	0003840546	S	1629	ACTCACTGGGTTCCTGGGGACCTCACAGGATGTTCTCGGGATGAGCCTCC	4	-	122930612-122930661	4q34	Rattus norvegicus ankyrin repeat and BTB (POZ) domain containing 1 (Abtb1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]	Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94157	MGC94157
Rattus norvegicus	RefSeq	GI_62649015-S	ILMN_52878	RGD1562988_PREDICTED	XM_575828.2	XM_575828.2		500464	109474963	XM_575828.2	RGD1562988_predicted	XP_575828.2	ILMN_1355821	0006590035	S	1347	CGACCAGAACCAGAGGAACTTAGGAGGGGCGTACAGTGTCACATACCGGG	5	-	74973223-74973272	5q24	PREDICTED: Rattus norvegicus similar to EHM2 (predicted) (RGD1562988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638544-S	ILMN_54879	LOC499021	XM_574315.1	XM_574315.1		499021	62638544	XM_574315.1	LOC499021	XP_574315.1	ILMN_1348941	0005690113	S	1474	CCAGGGGTGTCTCTCCAGCAGCTATGTGGAAGAATAAGCTCTGACATTCG				1q11	PREDICTED: Rattus norvegicus similar to PACRG (LOC499021), mRNA.					
Rattus norvegicus	RefSeq	GI_13027411-S	ILMN_295529	CDX2	NM_023963.1	NM_023963.1		66019	13027411	NM_023963.1	Cdx2	NP_076453.1	ILMN_1368698	0000450048	S	1642	TCCACAGATCAGGAAGGGGTGGTGGGTTCAGGGACCATCGTGTGAGAGGA				12p11	Rattus norvegicus caudal type homeo box 2 (Cdx2), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IDA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27672899-S	ILMN_274174	PROSC_PREDICTED	XM_001061712.1	XM_001061712.1		306544	109504269	XM_001061712.1	Prosc_predicted	XP_001061712.1	ILMN_2040458	0005130386	S	567	TCTAAGTCAAGGACCAAACCCAGACTTCCAGAGGTTGCTGTCCCTGCGGC				16q12.4	PREDICTED: Rattus norvegicus proline synthetase co-transcribed (predicted) (Prosc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649429-S	ILMN_51156	LOC500523	XM_575883.1	XM_575883.1		500523	62649429	XM_575883.1	LOC500523	XP_575883.1	ILMN_1354518	0005900609	S	1425	AGTGGCAGTTTGTTCATCATAACAAAGCACAGCTGTTCAGATGACCGAGT					PREDICTED: Rattus norvegicus similar to DEK oncogene (DNA binding) (LOC500523), mRNA.					
Rattus norvegicus	RefSeq	GI_62655033-I	ILMN_52121	INPP1_PREDICTED	XM_576560.1	XM_576560.1		316376	62655033	XM_576560.1	Inpp1_predicted	XP_576560.1	ILMN_1376072	0003710070	S	393	CGCGCGCTCCATCGCCACTGCGGAGGGCAGATTCAGATTACAATCGTACT				9q22	PREDICTED: Rattus norvegicus inositol polyphosphate-1-phosphatase (predicted) (Inpp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62945383	ILMN_274520	IZUMO1	NM_001017514.1	NM_001017514.1		499152	62945383	NM_001017514.1	Izumo1	NP_001017514.1	ILMN_1530472	0000450398	S	1277	TACTTCACTTTAGAAAAACCAGAGTTAAATCGAAGAACTCAAATGTGGAA	1	+	96095671-96095720	1q22	Rattus norvegicus izumo sperm-egg fusion 1 (Izumo1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head [goid 7342] [evidence ISS]; The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head [goid 7342] [evidence IEA]; The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head [goid 7342] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_6981683-S	ILMN_273305	TTR	NM_012681.1	NM_012681.1		24856	6981683	NM_012681.1	Ttr	NP_036813.1	ILMN_1363307	0004210725	S	429	TGTCGTCAGTAACCCCCAGAACTGAGGGACCCAGCCCACGAGGACCAAGA	18	+	12413513-12413537:12413538-12413562	18p12	Rattus norvegicus transthyretin (Ttr), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence TAS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Catalysis of the transfer of thyroid hormones from one side of the membrane to the other. Thyroid hormone are any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 15349] [evidence IPI]; Interacting selectively with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina [goid 16918] [evidence IEA]; Interacting selectively with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation [goid 19841] [evidence IEA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IDA]	prealbumin; LR1	prealbumin; LR1
Rattus norvegicus	RefSeq	GI_62641069-S	ILMN_68183	TRIM34_PREDICTED	XM_219045.4	XM_219045.4		293294	109459173	XM_219045.4	Trim34_predicted	XP_219045.4	ILMN_1353936	0000380435	S	2603	TGCCGCTTTTCCCAACCTGCCTATCCATACTTCAATCCTTGGGACTGCCC	1	+	162093838-162093887	1q32	PREDICTED: Rattus norvegicus tripartite motif protein 34 (predicted) (Trim34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652675-S	ILMN_58405	LOC362945	XM_343275.2	XM_343275.2		362945	62652675	XM_343275.2	LOC362945	XP_343276.1	ILMN_1361430	0002360041	S	1161	ACACGCCCGGTGGGACAAGAACCACAACACGAGGGAGGCAGCATGGCCTT					PREDICTED: Rattus norvegicus similar to Peroxidasin CG12002-PA (predicted) (LOC362945), mRNA.					
Rattus norvegicus	RefSeq	GI_62641475-A	ILMN_269111	CD81	NM_013087.1	NM_013087.1		25621	6978638	NM_013087.1	Cd81	NP_037219.1	ILMN_1376719	0001570050	S	1179	AGTTCTGCCTGCTGAGCCAAACCTCCTCCATAGCTACTTGTCCAGAGGCC	1	+	203342786-203342835	1q41	Rattus norvegicus Cd81 molecule (Cd81), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 6661] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [evidence ISS]; The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [evidence ISS]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IDA]; Any process that activates or increases the activity of 1-phosphatidylinositol 4-kinase [goid 43128] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tapa1	Tapa1
Rattus norvegicus	RefSeq	GI_62652534-A	ILMN_277855	DGAT1	NM_053437.1	NM_053437.1		84497	17865334	NM_053437.1	Dgat1	NP_445889.1	ILMN_1376322	0000430020	S	1398	GTGAACCGCTTCTTCCAAGGGAACTATGGCAATGCAGCTGTGTGGGTGAC	7	-	114552355-114552404	7q34	Rattus norvegicus diacylglycerol O-acyltransferase homolog 1 (mouse) (Dgat1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol [goid 19432] [evidence IDA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IMP]; The chemical reactions and pathways involving glycerolipids, any lipid with a glycerol backbone. Diacylglycerol and phosphatidate are key lipid intermediates of glycerolipid biosynthesis [goid 46486] [evidence IDA]	Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol [goid 3846] [evidence IEA]; Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol [goid 3846] [evidence ISS]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence IDA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence IDA]; Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol [goid 4144] [evidence ISS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IDA]	Dgat	Dgat
Rattus norvegicus	RefSeq	GI_62658092-S	ILMN_269451	RGD1560175_PREDICTED	XM_001067438.1	XM_001067438.1		303946	109494390	XM_001067438.1	RGD1560175_predicted	XP_001067438.1	ILMN_1351898	0004570403	S	6771	GGAAATAGCGGCTCTTCCCGATGGCTCAGCAATGTCACCTTTGCTTACCA				11q21	PREDICTED: Rattus norvegicus similar to hypothetical protein KIAA2018 (predicted) (RGD1560175_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24308501-S	ILMN_264144	CST12	NM_153734.1	NM_153734.1		266776	24308501	NM_153734.1	Cst12	NP_714956.1	ILMN_1357423	0000430551	S	416	GCACCTGTGTGCAGACTTAAGTGGGGCAAGGGTCTTTCTGTGCCTGTAGC	3	+	137551779-137551786:137551787-137551828	3q41	Rattus norvegicus cystatin 12 (Cst12), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643606-S	ILMN_55745	LOC502524	XM_578008.1	XM_578008.1		502524	62643606	XM_578008.1	LOC502524	XP_578008.1	ILMN_1364884	0004570138	S	939	AAGACAGCCTTTAGGAAAGCAGGGATCCAGTGGGCCGTGGTCTCTGTTGG					PREDICTED: Rattus norvegicus similar to wild-type p53-induced gene 1 (LOC502524), mRNA.					
Rattus norvegicus	RefSeq	GI_62644258-S	ILMN_66946	RWDD3	XM_342332.3	XM_342332.3		65026	109465506	XM_342332.3	Rwdd3	XP_342333.3	ILMN_1358462	0002340091	S	407	GCCAGAAAGCTCGACTGTGGACGGCGGACTGTGGATGACTCTTTTGCGTT	2	-	217741081-217741130	2q41	PREDICTED: Rattus norvegicus RWD domain containing 3 (Rwdd3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62642395-I	ILMN_280006	KCNIP2	NM_020094.2	NM_020094.2		56817	76881825	NM_020094.2	Kcnip2	NP_064479.2	ILMN_1375827	0003120400	S	2110	TAGGGACGGTAGGCTCCAGGTCCAACCTCTCCAGGTCAGCACCCTGCCAT	1	-	251008862-251008911	1q54	Rattus norvegicus Kv channel-interacting protein 2 (Kcnip2), transcript variant a, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process by which voltage-gated potassium channels become localized together in high densities. In animals, voltage-gated potassium (Kv) channels are clustered beneath the myelin sheath in regions immediately adjacent to paranodes, called juxtaparanodes, and along the inner mesaxon within the internode [goid 45163] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	KCHIP2	KCHIP2
Rattus norvegicus	RefSeq	GI_62661101-S	ILMN_58868	LOC289918	XM_223807.3	XM_223807.3		289918	62661101	XM_223807.3	LOC289918	XP_223807.3	ILMN_1353166	0002360364	S	864	TTCAAACCTGGTCTTCTGGAGTCTCTGCAGCCTGTCAGCGTGGCTCAGTG				15p16	PREDICTED: Rattus norvegicus similar to glutaredoxin 1 (thioltransferase) (LOC289918), mRNA.		Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds [goid 15035] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660239-S	ILMN_266354	RGD1559654_PREDICTED	XM_577321.1	XM_577321.1		501898	62660239	XM_577321.1	RGD1559654_predicted	XP_577321.1	ILMN_1371008	0006400706	S	993	GATAGGAGTGCTCTTATATGGTTTGGATGTGATGCCCCTTAGAGGTCTCC	14	-	15720016-15720065	14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1559654_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665963-S	ILMN_270721	PYP_MAPPED	XM_001055932.1	XM_001055932.1		294504	109510098	XM_001055932.1	Pyp_mapped	XP_001055932.1	ILMN_1370202	0000050441	S	1301	GCTGAGGGGACATGGAAGTCATTTGTGGATAGATGTGTAAGGTGGGCACC				20q11	PREDICTED: Rattus norvegicus pyrophosphatase (mapped) (Pyp_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62666718-S	ILMN_68673	DDX21A_PREDICTED	XM_228810.3	XM_228810.3		317399	62666718	XM_228810.3	Ddx21a_predicted	XP_228810.3	ILMN_1368109	0004560368	S	3296	ACGACTGGTTCTTGCCTCAAAGACTTCGCTGGTGTTTGCGGTTCGGCGGG				20q11	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a (predicted) (Ddx21a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664762-S	ILMN_60563	LOC497725	XM_579536.1	XM_579536.1		497725	62664762	XM_579536.1	LOC497725	XP_579536.1	ILMN_1363724	0004760162	S	3073	AGGTCTGTGCAGAACCGCGTCAAGACCTGGTATGAGTACACCTGGCATTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031809 (LOC497725), mRNA.					
Rattus norvegicus	RefSeq	GI_62640814-S	ILMN_262930	BNC1_PREDICTED	XM_001067692.1	XM_001067692.1		365299	109462244	XM_001067692.1	Bnc1_predicted	XP_001067692.1	ILMN_1364349	0001050671	S	2581	GCACTACCTCAAGTATGAAGTCAGAGAGCAGCAGTCATTCCTCCTGGGAC				1q31	PREDICTED: Rattus norvegicus basonuclin 1 (predicted) (Bnc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655977-S	ILMN_64906	LOC497887	XM_573072.1	XM_573072.1		497887	62655977	XM_573072.1	LOC497887	XP_573072.1	ILMN_1360754	0006020497	S	472	CCTGGCCGATACCCAAAGAGAAGACGTCCTTGGTTCCTCCTCAGTCAGTG				10q21	PREDICTED: Rattus norvegicus similar to Eif4g1 protein (LOC497887), mRNA.					
Rattus norvegicus	RefSeq	GI_41386746-S	ILMN_278465	ZC3H18	NM_201416.1	NM_201416.1		292067	41386746	NM_201416.1	Zc3h18	NP_958819.1	ILMN_1363689	0001740136	S	3083	GATGAAGATGACGCTGAGTCCCAACCTCCCCACCAGACTGAACCAGCTCC	19	+	52691243-52691292	19q12	Rattus norvegicus zinc finger CCCH-type containing 18 (Zc3h18), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658680-S	ILMN_62883	HRBL_PREDICTED	XM_222017.3	XM_222017.3		304375	62658680	XM_222017.3	Hrbl_predicted	XP_222017.3	ILMN_1352733	0006650600	S	1510	CCTCGAACTGGATCCTCGGCGTTTGCCTCCAAACCTCCAACCACAAACCC				12q12	PREDICTED: Rattus norvegicus HIV-1 Rev binding protein-like (predicted) (Hrbl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654766-S	ILMN_51265	LOC501108	XM_576526.1	XM_576526.1		501108	62654766	XM_576526.1	LOC501108	XP_576526.1	ILMN_1359188	0001240452	S	839	AAGGTGGCTCTGAAAGGGAGAAACGGGGGCTCATCTGTAAAGCAGGGAGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501108), mRNA.					
Rattus norvegicus	RefSeq	GI_57114271-S	ILMN_269647	V1RE21	NM_001008958.1	NM_001008958.1		494302	57114271	NM_001008958.1	V1re21	NP_001008958.1	ILMN_1359794	0002650037	S	863	CCTTTTTGGTGAGCCATAACCCTGCTTTGTCCAGATTCAGCTTATCCTGG	1	-	57931164-57931213	1q12	Rattus norvegicus vomeronasal 1 receptor, E21 (V1re21), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646138-S	ILMN_268285	RGD1562279_PREDICTED	XM_001081097.1	XM_001081097.1		296129	109470787	XM_001081097.1	RGD1562279_predicted	XP_001081097.1	ILMN_1351566	0006110672	S	1171	CAGGCACCCGCTGTACCCCCTGTTTCATTTCCAGATGCCAGAGACAAGCC				3q36	PREDICTED: Rattus norvegicus similar to oocyte astacin (predicted) (RGD1562279_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642747-S	ILMN_59185	OTP	XM_215445.3	XM_215445.3		294640	62642747	XM_215445.3	Otp	XP_215445.3	ILMN_1365649	0000730408	S	2235	CGCCGGTGGGTGCAGGCGGACATCTACAACCCTGCAACTTTGTACAGAGA				2q12	PREDICTED: Rattus norvegicus orthopedia homolog (Drosophila) (Otp), mRNA.		Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence IEA]; Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The differentiation of cells that will contribute to the structure and function of the hypothalamus [goid 21979] [evidence IEA]; The differentiation of cells that will contribute to the structure and function of the hypothalamus [goid 21979] [evidence ISS]; The progression of the neurohypophysis over time from its initial formation until its mature state. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation [goid 21985] [evidence IEA]; The progression of the neurohypophysis over time from its initial formation until its mature state. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation [goid 21985] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662684-S	ILMN_52398	F11	XM_224872.4	XM_224872.4		290757	109503400	XM_224872.4	F11	XP_224872.4	ILMN_1363465	0003360484	S	1681	GGATATAAGGAAGGAGGGAAGGATACGTGTAAGGGAGATTCTGGAGGGCC	16	+	50297698-50297730:50298742-50298758	16q11	PREDICTED: Rattus norvegicus coagulation factor XI (F11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite [goid 44421] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence TAS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 70009] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62665384-S	ILMN_281934	RIS2_PREDICTED	XM_001079374.1	XM_001079374.1		292071	109509012	XM_001079374.1	Ris2_predicted	XP_001079374.1	ILMN_1349430	0003710722	S	1361	GAGGTCCAGAAGCAGTTGGCACGGATGACAAGGTGCCCTGAGAAGGAGCT				19q12	PREDICTED: Rattus norvegicus retroviral integration site 2 (predicted) (Ris2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664405-S	ILMN_49386	LOC498863	XM_574148.1	XM_574148.1		498863	62664405	XM_574148.1	LOC498863	XP_574148.1	ILMN_1372139	0003170181	S	1603	GCTCAACCACCAGAATGAGGCCAGACCAGTAGAAGCCAGTGCAGGAGCAG					PREDICTED: Rattus norvegicus similar to C630007L23Rik protein (LOC498863), mRNA.					
Rattus norvegicus	RefSeq	GI_46048591-S	ILMN_270856	MK1	NM_134399.2	NM_134399.2		171436	46048591	NM_134399.2	Mk1	NP_599226.1	ILMN_1362836	0004230504	S	2294	CACGGTGGTTGGATGTTGTGAAATGGCCTCTCACCTGCGGCACCCCCTTT	16	-	19286440-19286469:19286470-19286489	16p14	Rattus norvegicus Mk1 protein (Mk1), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654665	ILMN_294692	FRS3	NM_001017382.1	NM_001017382.1		316213	62821835	NM_001017382.1	Frs3	NP_001017382.1	ILMN_1649903	0004150685	S	1498	GACGGCACTGTCAGGAAGACTCGGCACAACAGCACCGACCTGCCTCTGTA	9	-	8755148-8755197	9q12	Rattus norvegicus fibroblast growth factor receptor substrate 3 (Frs3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]		Interacting selectively with the insulin receptor [goid 5158] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649344-S	ILMN_267985	TEK	XM_001054314.1	XM_001054314.1		89804	109476757	XM_001054314.1	Tek	XP_001054314.1	ILMN_1370024	0006370504	S	3474	CCCCAGGGCTACAGATTGGAGAAGCCCCTGAACTGTGATGATGAGGTGTA				5q33	PREDICTED: Rattus norvegicus endothelial-specific receptor tyrosine kinase (Tek), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence TAS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that activates or increases angiogenesis [goid 45766] [evidence TAS]; Any process that activates or increases angiogenesis [goid 45766] [evidence IMP]; The series of molecular signals generated as a consequence of a Tie receptor binding to one of its physiological ligands (angiopoietins) [goid 48014] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA];  [goid 4716] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_27545357-S	ILMN_270942	UGT2B17	NM_173295.1	NM_173295.1		286954	27545357	NM_173295.1	Ugt2b17	NP_775417.1	ILMN_1363130	0002650594	S	1677	CCTGTTGTCATGCCAGTGCCTTCCCTCTAAAAGAAGACAGCGTTGGGACC	14	+	22650649-22650698	14p21	Rattus norvegicus UDP glucuronosyltransferase 2 family, polypeptide B17 (Ugt2b17), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence TAS]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IMP]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]	2B1	2B1
Rattus norvegicus	RefSeq	GI_62642972-S	ILMN_47723	RGD1305938_PREDICTED	XM_227089.4	XM_227089.4		310362	109464362	XM_227089.4	RGD1305938_predicted	XP_227089.3	ILMN_1361104	0001850324	S	1172	CATGTAAACCTGCCACTGGTAAGGAGGAACCCAATGTAGACGGACAGTTG	2	-	53890614-53890663	2q16	PREDICTED: Rattus norvegicus similar to expressed sequence AW549877 (predicted) (RGD1305938_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651117-S	ILMN_298400	LOC500700	XR_006574.1	XR_006574.1		500700	109478592	XR_006574.1	LOC500700		ILMN_1359252	0006550324	S	1485	CCAGGATGATCAAGGGGATGACCGGAGGTTTAGAAGAGGAGTAGAGCGGG	6	-	114900675-114900687:114904566-114904602	6q31	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 145 (LOC500700), mRNA.					
Rattus norvegicus	RefSeq	GI_6978492-S	ILMN_287877	ALOX5	NM_012822.1	NM_012822.1		25290	6978492	NM_012822.1	Alox5	NP_036954.1	ILMN_1349220	0004280687	S	2295	CTTCCTGTCTTCAGTGACATAGTTCAGGGGCCTCCCATCCAGAGCAGGGG	4	-	152610478-152610527	4q42	Rattus norvegicus arachidonate 5-lipoxygenase (Alox5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence TAS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]	The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 6691] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence IMP]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence TAS];  [goid 19372] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: arachidonate + O2 = (6E,8Z,11Z,14Z)-(5S)-5-hydroperoxycosa-6,8,11,14-tetraenoate [goid 4051] [evidence IEA]; Catalysis of the reaction: arachidonate + O2 = (6E,8Z,11Z,14Z)-(5S)-5-hydroperoxycosa-6,8,11,14-tetraenoate [goid 4051] [evidence IMP]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: linoleate + O2 = (9Z,11E)-(13S)-13-hydroperoxyoctadeca-9,11-dienoate [goid 16165] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	LOX5A	LOX5A
Rattus norvegicus	RefSeq	GI_47155568-S	ILMN_284627	ZDHHC23	NM_213627.1	NM_213627.1		363783	47155568	NM_213627.1	Zdhhc23	NP_998792.1	ILMN_1366047	0002030139	S	5688	GGCTGAGGGCTGGACTCTGCACTCTTCGTGTCCCTCTATCGCCAACTTAG	11	+	58300435-58300484	11q21	Rattus norvegicus zinc finger, DHHC domain containing 23 (Zdhhc23), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	DHHC23; nidd	DHHC23; nidd
Rattus norvegicus	RefSeq	GI_47576298-S	ILMN_295159	OLR127	NM_001001026.1	NM_001001026.1		405911	47576298	NM_001001026.1	Olr127	NP_001001026.1	ILMN_1349773	0003850706	S	195	GGCCATTTTGGCAGTCACAGACATTGCCCTTAGCACTTGCATTCTTCCCA	1	-	161543490-161543539	1q32	Rattus norvegicus olfactory receptor 127 (Olr127), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr127	Olr127
Rattus norvegicus	RefSeq	GI_62078860-S	ILMN_297667	PARS2	NM_001014064.1	NM_001014064.1		313429	62078860	NM_001014064.1	Pars2	NP_001014086.1	ILMN_1358436	0004050091	S	2909	AGCAGCTGGACAGACTTAGAGGAGAAAGCGGGCTAAGCACCTGTATTCCC	5	+	127732572-127732621	5q34	Rattus norvegicus prolyl-tRNA synthetase (mitochondrial)(putative) (Pars2), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6426] [evidence IEA]; The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6433] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly) [goid 4820] [evidence IEA]; Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro) [goid 4827] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	RGD1305345	RGD1305345
Rattus norvegicus	RefSeq	GI_62662505-S	ILMN_282716	TKTL2_PREDICTED	XM_001073142.1	XM_001073142.1		290685	109504057	XM_001073142.1	Tktl2_predicted	XP_001073142.1	ILMN_1353951	0000130687	S	1800	GCCTGACATCGTCGTTCATCAACTTGCAGTAACAGAAGTGCCTCGAAGCG				16p14	PREDICTED: Rattus norvegicus transketolase-like 2 (predicted) (Tktl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642587-S	ILMN_49758	LOC365500	XM_345057.2	XM_345057.2		365500	62642587	XM_345057.2	LOC365500	XP_345058.2	ILMN_1374724	0000540341	S	340	TGGATGTACAGGGCTGGCGCTGGGTGCTATCCACAGATGTGTCATTTGGG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365500), mRNA.					
Rattus norvegicus	RefSeq	GI_62639446	ILMN_55624	LOC502315	XM_577779.1	XM_577779.1		502315	62639446	XM_577779.1	LOC502315	XP_577779.1	ILMN_1650381	0002360441	S	1499	AGTCTGCCCAGGAAGCCCACAGCAGCAAGCTTAAAAAGAGAGGTGGTGGC					PREDICTED: Rattus norvegicus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (LOC502315), mRNA.					
Rattus norvegicus	RefSeq	GI_39930372-S	ILMN_294755	PRKCE	NM_017171.1	NM_017171.1		29340	39930372	NM_017171.1	Prkce	NP_058867.1	ILMN_1373193	0002900082	S	2628	TGAACTGCGTCTGCTCTGTGTGCAGTGCTAGGTCTGGAGTAGCCGTCCAC				6q12	Rattus norvegicus protein kinase C, epsilon (Prkce), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol but not calcium [goid 4699] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol but not calcium [goid 4699] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Pkce	Pkce
Rattus norvegicus	RefSeq	GI_56090352-S	ILMN_298152	CIAPIN1	NM_001007689.1	NM_001007689.1		307649	56090352	NM_001007689.1	Ciapin1	NP_001007690.1	ILMN_1353600	0003130039	S	1549	GCTCCAGGTCCACTCATTGATGCTGCCACTTGCTGAACTTCCTCAGTCCG	19	+	10631957-10632006	19p12	Rattus norvegicus cytokine induced apoptosis inhibitor 1 (Ciapin1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]		MGC94686	MGC94686
Rattus norvegicus	RefSeq	GI_62667305-S	ILMN_55231	LOC503473	XM_580270.1	XM_580270.1		503473	62667305	XM_580270.1	LOC503473	XP_580270.1	ILMN_1363503	0000840670	S	486	GCTTGTGGAGGAGAGGGGCTTAAGATGGCTGTGGTTGATTTAGCAATGGT					PREDICTED: Rattus norvegicus LOC503473 (LOC503473), mRNA.					
Rattus norvegicus	RefSeq	GI_62667311-S	ILMN_55595	LOC315907	XM_236524.3	XM_236524.3		315907	62667311	XM_236524.3	LOC315907	XP_236524.3	ILMN_1352321	0003850132	S	4292	GCGCCGCTCAATCAAGAAGCTGAGATTTCTGTGTTCTCGTGGGGACAAGC				Xq35	PREDICTED: Rattus norvegicus similar to Nck-interacting kinase-like embryo specific kinase (LOC315907), mRNA.					
Rattus norvegicus	RefSeq	GI_62655199-S	ILMN_296177	SLC11A1	NM_001031658.1	NM_001031658.1		316519	72535141	NM_001031658.1	Slc11a1	NP_001026828.1	ILMN_1360795	0006130176	S	1523	CTGGCCTGGACCTGTTGCATTGCCCATGGAGCCAAGTTTCTGACCCACAG	9	+	73724946-73724948:73725047-73725093	9q33	Rattus norvegicus solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 (Slc11a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]	Itg; Lsh; Bcg; MGC124692; Nramp1	Itg; Lsh; Bcg; MGC124692; Nramp1
Rattus norvegicus	RefSeq	GI_27681672-S	ILMN_268843	CTS7_PREDICTED	XM_001065193.1	XM_001065193.1		290970	109505373	XM_001065193.1	Cts7_predicted	XP_001065193.1	ILMN_1362201	0006760100	S	896	CTCTCGACCATGGTCTACTATTGGTTGGCTATGGCTATGAAGGCCATGAG				17p14	PREDICTED: Rattus norvegicus cathepsin 7 (predicted) (Cts7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27679377-S	ILMN_271307	LOC685393	XM_001063618.1	XM_001063618.1		685393	109499712	XM_001063618.1	LOC685393	XP_001063618.1	ILMN_2040505	0001440392	S	218	ATCAGCCGACAGACATGAGGCGGAGGTGTGAGGAGGAAGCCCAGGAAATC	14	+	48619896-48619945	14p11	PREDICTED: Rattus norvegicus similar to lin-9 homolog (LOC685393), mRNA.					
Rattus norvegicus	RefSeq	GI_62643825-S	ILMN_67049	S100A5_PREDICTED	XM_215608.3	XM_215608.3		295211	109465111	XM_215608.3	S100a5_predicted	XP_215608.3	ILMN_1352896	0003940315	S	306	GACAACAAGTGACCAGCTACCCTCACCAGCAGCCCCTTGTCCTGACCTCT	2	+	182893529-182893540:182893541-182893578	2q34	PREDICTED: Rattus norvegicus S100 calcium binding protein A5 (predicted) (S100a5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078804-S	ILMN_277464	RGD1306227	NM_001014037.1	NM_001014037.1		310377	62078804	NM_001014037.1	RGD1306227	NP_001014059.1	ILMN_1369676	0004810647	S	1902	TAACTGGCTGCTGGAAAACAGTGGTGTCCTCAACCTGACTTCTGGCAAGA	2	+	51662447-51662451:51663635-51663679	2q16	Rattus norvegicus similar to 4833420G17Rik protein (RGD1306227), mRNA.					
Rattus norvegicus	RefSeq	GI_62659181-S	ILMN_277226	RGD1561585_PREDICTED	XR_008292.1	XR_008292.1		501849	109498501	XR_008292.1	RGD1561585_predicted		ILMN_1372904	0002030035	S	206	TCCTGGAAGGCTGGAAAACATGGCCCCAGGCCGAACCTTTCGCACTATCA				13p12	PREDICTED: Rattus norvegicus similar to PLRR-4 polymorphic leucine-rich repeat protein (predicted) (RGD1561585_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981263-S	ILMN_301080	NF1	NM_012609.1	NM_012609.1		24592	6981263	NM_012609.1	Nf1	NP_036741.1	ILMN_1350590	0004920450	S	8835	AGGAAGCCTGACTGAGAGCGTGGACTGTGGGCGTGGATGAACCGTCCAGT				10q25	Rattus norvegicus neurofibromin 1 (Nf1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence ISS]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell adhesion to the extracellular matrix [goid 1953] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14044] [evidence ISS]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues [goid 21510] [evidence ISS]; The process aimed at the progression of an astrocyte that resides in the forebrain, from initial commitment of the cell to its fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function [goid 21897] [evidence ISS]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of Schwann cells in the peripheral nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22011] [evidence ISS]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of Schwann cells in the peripheral nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22011] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence ISS]; Any process that activates or increases the activity of a GTPase of the Ras superfamily [goid 32320] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Rac protein signal transduction [goid 35021] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42992] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43409] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; Any process that modulates the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43535] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone tissue loss (resorption) [goid 45124] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that modulates the frequency, rate or extent of glia cell differentiation [goid 45685] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of adenylate cyclase activity [goid 45762] [evidence ISS]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a neurotransmitter [goid 46929] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence ISS]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of astrocyte differentiation [goid 48712] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte differentiation [goid 48715] [evidence ISS]; The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure [goid 48745] [evidence ISS]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]; The process by which the anatomical structures of the forebrain are generated and organized. Morphogenesis pertains to the creation of form. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 48853] [evidence ISS]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence ISS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Ras superfamily [goid 5099] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]; Interacting selectively with syndecan, an integral membrane proteoglycan (250-300 kDa) associated largely with epithelial cells [goid 45545] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_40385884-S	ILMN_275149	FSHR	NM_199237.1	NM_199237.1		25449	40385884	NM_199237.1	Fshr	NP_954707.1	ILMN_1356887	0001570280	S	2039	ACCTCATCCGCTACCCACAACTTCCATGCCCGAAAGAGCCACTGCTCCTC	6	-	12926169-12926218	6q12	Rattus norvegicus follicle stimulating hormone receptor (Fshr), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals mediated by follicle-stimulating hormone [goid 42699] [evidence IDA]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with follicle-stimulating hormone to initiate a change in cell activity [goid 4963] [evidence IDA]; Combining with follicle-stimulating hormone to initiate a change in cell activity [goid 4963] [evidence IEA]; Combining with follicle-stimulating hormone to initiate a change in cell activity [goid 4963] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643208-S	ILMN_59354	LOC497753	XM_579371.1	XM_579371.1		497753	62643208	XM_579371.1	LOC497753	XP_579371.1	ILMN_1352335	0006860546	S	796	TTGGTGAACCACTGGGGGAGTGGAACTGTCCTGTGGAAGACTGCAGATAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013110 (LOC497753), mRNA.					
Rattus norvegicus	RefSeq	GI_62643167-S	ILMN_57286	TPD52_PREDICTED	XM_215524.4	XM_215524.4		294900	109464552	XM_215524.4	Tpd52_predicted	XP_215524.4	ILMN_1363542	0003610026	S	966	CGAACGCTACCAGTACCACAACCACGGAGCCACCTCCAGAACAGACGACA	2	+	94880525-94880574	2q23	PREDICTED: Rattus norvegicus tumor protein D52 (predicted) (Tpd52_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641462	ILMN_284365	CCDC95	NM_001013900.1	NM_001013900.1		293494	62078528	NM_001013900.1	Ccdc95	NP_001013922.1	ILMN_1650638	0006770372	S	587	CTGAGGCCCAAGCTGGAGAAACGGCCCCGCCTACCCCGGAAACTCAAGAT	1	-	186032244-186032246:186036609-186036655	1q36	Rattus norvegicus coiled-coil domain containing 95 (Ccdc95), mRNA.				CCDC95	CCDC95
Rattus norvegicus	RefSeq	GI_62643489-S	ILMN_50084	LOC499624	XM_574948.1	XM_574948.1		499624	62643489	XM_574948.1	LOC499624	XP_574948.1	ILMN_1368320	0004850619	S	217	GAGCAGTGGTTGCCCTTTCAGAAGATGAGGCTTCAATTGCCCGCCCCTAC				2q31	PREDICTED: Rattus norvegicus similar to KIAA0669 gene product (LOC499624), mRNA.					
Rattus norvegicus	RefSeq	GI_62648999-S	ILMN_285382	FCMD_PREDICTED	XM_001057514.1	XM_001057514.1		362520	109476503	XM_001057514.1	Fcmd_predicted	XP_001057514.1	ILMN_1359585	0003840148	S	1468	CTGTCAAGACCTGGGACTGGAAGAGCTCACCCCCGAATGTGCAGCCCAAT				5q24	PREDICTED: Rattus norvegicus Fukuyama type congenital muscular dystrophy homolog (human) (predicted) (Fcmd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645411-S	ILMN_57574	LOC499837	XM_580023.1	XM_580023.1		499837	62645411	XM_580023.1	LOC499837	XP_580023.1	ILMN_1354991	0007000164	S	200	CCAAAGGCTCTTGCTGGAGGGACAGTAGAATGCGTCTGGAGAACTGGTCC					PREDICTED: Rattus norvegicus LOC499837 (LOC499837), mRNA.					
Rattus norvegicus	RefSeq	GI_62653548-S	ILMN_289433	SORL1_PREDICTED	XM_001065506.1	XM_001065506.1		300652	109484565	XM_001065506.1	Sorl1_predicted	XP_001065506.1	ILMN_1363716	0004280551	S	6871	GAGGACGACGAAGATGCTCCCATGATTACCGGATTCTCAGACGATGTCCC				8q22	PREDICTED: Rattus norvegicus sortilin-related receptor, L(DLR class) A repeats-containing (predicted) (Sorl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654568-S	ILMN_289433	SORL1_PREDICTED	XM_001065506.1	XM_001065506.1		300652	109484565	XM_001065506.1	Sorl1_predicted	XP_001065506.1	ILMN_1365362	0000840113	S	3615	GAGGAATTGCCCCACGACCATCTGTGATGCAGACACTCAGTTCCGGTGCC				8q22	PREDICTED: Rattus norvegicus sortilin-related receptor, L(DLR class) A repeats-containing (predicted) (Sorl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657560-S	ILMN_277698	RBM11_PREDICTED	XM_001067345.1	XM_001067345.1		288321	109493879	XM_001067345.1	Rbm11_predicted	XP_001067345.1	ILMN_1360816	0007100121	S	799	CCCAGCTCCTACGAATGGACTCACCAGCCACCGAATGACCCTGACCTGTA				11p11	PREDICTED: Rattus norvegicus RNA binding motif protein 11 (predicted) (Rbm11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648368-S	ILMN_65325	LOC502881	XM_578382.1	XM_578382.1		502881	62648368	XM_578382.1	LOC502881	XP_578382.1	ILMN_1355143	0000730577	S	88	CCAGCCAAGCCAGGGAGGTAAACACGGTGTTTGCAATTTCCACTCTGGCC					PREDICTED: Rattus norvegicus similar to OTTHUMP00000018508 (LOC502881), mRNA.					
Rattus norvegicus	RefSeq	GI_62659994-S	ILMN_61008	LOC364082	XM_577300.1	XM_577300.1		364082	62659994	XM_577300.1	LOC364082	XP_577300.1	ILMN_1374686	0002760451	S	58	GATCATCAGCTTCAGACACCACTCTCAGGATGAGCAGCCCTACTTCGATG					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 variant 1 (LOC364082), mRNA.					
Rattus norvegicus	RefSeq	GI_62656762-S	ILMN_264786	RGD1560397_PREDICTED	XM_001081205.1	XM_001081205.1		360596	109491619	XM_001081205.1	RGD1560397_predicted	XP_001081205.1	ILMN_1357682	0001780551	S	2081	CACCCGGGACTTTAGCACTGAATCGAAATTGTGATACGCGGAGCGGGGGG				10q26	PREDICTED: Rattus norvegicus similar to RNA-binding protein Musashi2-S (predicted) (RGD1560397_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657943-S	ILMN_274795	STFA2_PREDICTED	XM_001070786.1	XM_001070786.1		288070	109494454	XM_001070786.1	Stfa2_predicted	XP_001070786.1	ILMN_1352951	0001230647	S	193	GTTGGGTGTGGTTGTTACGTCCACCTAAGAGTCTTCAGTGGTATTTCCAG				11q22	PREDICTED: Rattus norvegicus stefin A2 (predicted) (Stfa2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641131-I	ILMN_48357	ZFP143_PREDICTED	XM_574536.1	XM_574536.1		361627	62641131	XM_574536.1	Zfp143_predicted	XP_574536.1	ILMN_1375799	0002690577	S	196	AATGGAGGCTAGGGGCGGGACTCAGAATTGCTATGCGGGTTGCGGGGCCT				1q33	PREDICTED: Rattus norvegicus zinc finger protein 143 (predicted) (Zfp143_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20806172-S	ILMN_298482	IL11RA1	NM_139116.1	NM_139116.1		245983	20806172	NM_139116.1	Il11ra1	NP_620816.1	ILMN_1352933	0006770609	S	1370	TCAGACTGGGGTGGTTAAATGGACAGGCAGGAGGAGGCAGGACAGCGGAT	5	+	59199442-59199491	5q22	Rattus norvegicus interleukin 11 receptor, alpha chain 1 (Il11ra1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Attachment of the blastocyst to the uterine lining [goid 7566] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]; Combining with interleukin-11 to initiate a change in cell activity [goid 4921] [evidence TAS]; Interacting selectively with interleukin-11 [goid 19970] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62665142-S	ILMN_56795	RGD1566420_PREDICTED	XM_574226.2	XM_574226.2		498941	109508049	XM_574226.2	RGD1566420_predicted	XP_574226.1	ILMN_1364057	0002510300	S	979	TGCGCGGGCTTGAGAGAGATACACTGCTTCTGCGTGGTGAGACCCTCTGT	19	+	35084559-35084608	19q11	PREDICTED: Rattus norvegicus similar to F-box and leucine-rich repeat protein 8 (predicted) (RGD1566420_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646205-S	ILMN_262800	RGD1562262_PREDICTED	XR_009560.1	XR_009560.1		311573	109471162	XR_009560.1	RGD1562262_predicted		ILMN_1350677	0006520324	S	7352	CCCCTGAGGCCACTGTTCTGGAGGCCGAGACGAAAAAGCTGGATGAGTCT				3q42	PREDICTED: Rattus norvegicus similar to centrosomal Nek2-associated protein 1 (predicted) (RGD1562262_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577810-S	ILMN_300991	OLR1223	NM_001000441.1	NM_001000441.1		300549	47577810	NM_001000441.1	Olr1223	NP_001000441.1	ILMN_1352538	0006290014	S	461	TGGGGTTTGTTAGTGCCATGGCTCACACAGGCTGTATGGTCAGGCTCACC	8	+	40382836-40382885	8q22	Rattus norvegicus olfactory receptor 1223 (Olr1223), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1223	Olr1223
Rattus norvegicus	RefSeq	GI_62664671-S	ILMN_295058	RGD1311910_PREDICTED	XM_001057895.1	XM_001057895.1		307235	109507616	XM_001057895.1	RGD1311910_predicted	XP_001057895.1	ILMN_1364064	0002450279	S	993	GCTTCCTTTTGGGTGAGGAGGATGAGGATGAGGACAGCAGCACAGAGTGG				18q12.3	PREDICTED: Rattus norvegicus similar to hypothetical p38 protein (predicted) (RGD1311910_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645582-S	ILMN_65842	BUB1B	XM_342494.3	XM_342494.3		171576	109468654	XM_342494.3	Bub1b	XP_342495.3	ILMN_1350555	0002030332	S	3357	GGAGCACCTGCATGTCTTCTGGGATGGACTCCTCTGGAGACTTAGCCAAA	3	+	105114195-105114244	3q35	PREDICTED: Rattus norvegicus budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae) (Bub1b), mRNA.	A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence IDA]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence IEA]; The region of a condensed chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions [goid 940] [evidence IDA]; The region of a condensed chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions [goid 940] [evidence ISS]; The region of a condensed chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions [goid 940] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62177151-S	ILMN_285798	LOC290071	NM_001039204.1	NM_001039204.1		290071	85861197	NM_001039204.1	LOC290071	NP_001034293.1	ILMN_1354082	0006200279	S	941	CCACCTCGTAAAGAAGGCTGTCTGAGGACTGACTGGATCTCCCCGATCTG				15p13	Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC290071), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC109112	MGC109112
Rattus norvegicus	RefSeq	GI_58865575	ILMN_291677	PLSCR4	NM_001012000.1	NM_001012000.1		300900	58865575	NM_001012000.1	Plscr4	NP_001012000.1	ILMN_1530402	0000580446	S	1350	TTGAGAACAGAATCAGAGAAATTTGCATCCAGCTTATAGCCTTCATTTAT	8	+	97465567-97465616	8q31	Rattus norvegicus phospholipid scramblase 4 (Plscr4), mRNA.				Pls4	Pls4
Rattus norvegicus	RefSeq	GI_62654090-A	ILMN_291677	PLSCR4	NM_001012000.1	NM_001012000.1		300900	58865575	NM_001012000.1	Plscr4	NP_001012000.1	ILMN_1376781	0006220270	S	1642	GAGGACTGCTACTCTTACCCGTCATCTTTAGGAGACAAGAGGTGCACAGA	8	+	97465859-97465908	8q31	Rattus norvegicus phospholipid scramblase 4 (Plscr4), mRNA.				Pls4	Pls4
Rattus norvegicus	RefSeq	GI_21426790-S	ILMN_264152	SLC15A4	NM_144758.1	NM_144758.1		246280	21426790	NM_144758.1	Slc15a4	NP_653359.1	ILMN_1363604	0005570195	S	2568	GTAAGATTGGAGGCAGGTGGTGAGTGGGGAAAACACGGGAGCTGTTGGGC	12	+	30130972-30131021	12q14	Rattus norvegicus solute carrier family 15, member 4 (Slc15a4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of, within or between cells [goid 15817] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of L-histidine from one side of a membrane to the other. L-histidine is 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 5290] [evidence IMP]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	MGC105315	MGC105315
Rattus norvegicus	RefSeq	GI_62648928-S	ILMN_278635	WDR32_PREDICTED	XM_001071487.1	XM_001071487.1		313242	109476429	XM_001071487.1	Wdr32_predicted	XP_001071487.1	ILMN_1354319	0002030010	S	2106	GGACATTTGGCAGGAGCCTTGGTTGGGATGAGAAAACCCATGGCACTAGT				5q22	PREDICTED: Rattus norvegicus WD repeat domain 32 (predicted) (Wdr32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393289-S	ILMN_63532	EDG1	NM_017301.1	NM_017301.1		29733	8393289	NM_017301.1	Edg1	NP_058997.1	ILMN_1353177	0006110528	S	2176	AGCTATGACTGTCCTTGGTCACACTCTATGGGAAAAACACCGGACTCCAC				2q41	Rattus norvegicus endothelial differentiation sphingolipid G-protein-coupled receptor 1 (Edg1), mRNA.					
Rattus norvegicus	RefSeq	GI_47575954-S	ILMN_286353	OLR149	NM_001000166.1	NM_001000166.1		293289	47575954	NM_001000166.1	Olr149	NP_001000166.1	ILMN_1373660	0003800377	S	404	CTACCGTCTTGACCCCCAAGACTATTATCAAGATTGCTGTGGGCATCTCC	1	-	162015023-162015072	1q32	Rattus norvegicus olfactory receptor 149 (Olr149), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162109360-162108410_ORF; Olr149	ratchr1-162109360-162108410_ORF; Olr149
Rattus norvegicus	RefSeq	GI_62718249-S	ILMN_50094	LOC363336	XM_343674.2	XM_343674.2		363336	62718249	XM_343674.2	LOC363336	XP_343675.2	ILMN_1349538	0006840010	S	910	GAGTTCCTGATGACCAACACCCTGAATGAAAACACCACTTGAGAGACACC					PREDICTED: Rattus norvegicus hypothetical LOC363336 (LOC363336), mRNA.					
Rattus norvegicus	RefSeq	GI_8393389-S	ILMN_293471	GABRB3	NM_017065.1	NM_017065.1		24922	8393389	NM_017065.1	Gabrb3	NP_058761.1	ILMN_1365593	0007040373	S	1310	CGGTACATGGGAGACAGAAGCATCCCGCACAAGAAGACGCACCTACGGAG	1	+	109277228-109277253:109277254-109277277	1q22	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit beta 3 (Gabrb3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 51932] [evidence IDA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence TAS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646245-S	ILMN_266902	RGD1562582_PREDICTED	XM_001068226.1	XM_001068226.1		499935	109471209	XM_001068226.1	RGD1562582_predicted	XP_001068226.1	ILMN_1349383	0004560292	S	3703	CAAGGGATCCAACCCCCTCCTCTGACCTCAAGCACCAGACTTGCACATGG				3q42	PREDICTED: Rattus norvegicus similar to KIAA0406-like protein (predicted) (RGD1562582_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377504-S	ILMN_57863	SULT1C2	NM_133547.2	NM_133547.2		171072	31377504	NM_133547.2	Sult1c2	NP_598231.2	ILMN_1363504	0001240180	S	2090	CTGGAACATGGCCTAGAAGAAAATGAGTGCTCCTGGCCCTGGGTCTTCCC				9q11	Rattus norvegicus sulfotransferase family, cytosolic, 1C, member 2 (Sult1c2), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]		Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112625	MGC112625
Rattus norvegicus	RefSeq	GI_62660850-S	ILMN_58608	LOC498423	XM_573672.1	XM_573672.1		498423	62660850	XM_573672.1	LOC498423	XP_573672.1	ILMN_1349249	0007040129	S	1995	GATCTGACACCCAAATTTCACAAGCACCAGCCCCTGGCAAGGTCACCCGC				14q22	PREDICTED: Rattus norvegicus similar to transcriptional regulator interacting with the PHD-bromodomain 2 (LOC498423), mRNA.					
Rattus norvegicus	RefSeq	GI_62644094-S	ILMN_58918	RGD1562971_PREDICTED	XM_345264.3	XM_345264.3		365891	109465347	XM_345264.3	RGD1562971_predicted	XP_345265.1	ILMN_1368066	0004540048	S	475	CTGAGCTGCTGGACCCCACTCCATACGGACTCATGGCCTAATGTATACAA	2	+	196191131-196191171:196191172-196191180	2q34	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1562971_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557235-S	ILMN_302233	RAD23A	NM_001013190.1	NM_001013190.1		361381	61557235	NM_001013190.1	Rad23a	NP_001013208.1	ILMN_1364330	0004810301	S	1316	AGGGGTAACATCAGTTCTGAAGGCCAAGGCCACCCCTTCCCCAGGACAGA	19	+	24976798-24976847	19q11	Rattus norvegicus RAD23 homolog A (S. cerevisiae) (Rad23a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence IEA]	Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_49227751-S	ILMN_60205	CHRM5	NM_017362.4	NM_017362.4		53949	77416372	NM_017362.4	Chrm5	NP_059058.1	ILMN_1355921	0006290114	S	2176	CATGCCCTGTTCCTTCCCAGTGTCCAAAGACCCTTCAACAAAAGGTCCGG	3	-	98326934-98326972:98326973-98326983	3q34	Rattus norvegicus cholinergic receptor, muscarinic 5 (Chrm5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence ISS]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence IEA]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4981] [evidence IDA];  [goid 4981] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650158-S	ILMN_270945	LOC680424	XM_001057106.1	XM_001057106.1		680424	109475918	XM_001057106.1	LOC680424	XP_001057106.1	ILMN_1358156	0003940458	S	183	TCGAGTTGCTCTCAGACATAGCCTACTTTGGCCTCACCACAATTGCAGGC	5	+	171869831-171869878:171870662-171870663	5q36	PREDICTED: Rattus norvegicus similar to Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome biogenesis factor 10) (RING finger protein 69) (LOC680424), mRNA.					
Rattus norvegicus	RefSeq	GI_62647318	ILMN_61071	RGD1304876_PREDICTED	XM_342693.3	XM_342693.3		362368	109472069	XM_342693.3	RGD1304876_predicted	XP_342694.1	ILMN_1650881	0006650348	S	60	AGCAGCGGTATCCCCGCTCTTCTGTGCTTGAAGCTGCTGGCGTGGACAAG	4	-	83467011-83467060	4q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A030007L17; EST AA673177 (predicted) (RGD1304876_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652575-S	ILMN_52887	PTP4A3_PREDICTED	XM_343259.3	XM_343259.3		362930	109480859	XM_343259.3	Ptp4a3_predicted	XP_343260.3	ILMN_1357473	0006220722	S	1744	CAGATGCTGCGTCATGTAGTGCGGGTTCTGGCTCTGTACGCCCTGTACTC	7	+	111467712-111467730:111467731-111467761	7q34	PREDICTED: Rattus norvegicus protein tyrosine phosphatase 4a3 (predicted) (Ptp4a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648568-S	ILMN_53055	LOC362477	XM_342797.2	XM_342797.2		362477	62648568	XM_342797.2	LOC362477	XP_342798.2	ILMN_1367192	0001190358	S	808	GCTCGAGGACCTGGGACGCCAATCCCTTCTTGTCCAGTGTTGCAATCCCT				5q12	PREDICTED: Rattus norvegicus similar to regulator of G-protein signaling Z1 (LOC362477), mRNA.					
Rattus norvegicus	RefSeq	GI_62650308-S	ILMN_53134	LOC366527	XM_345622.2	XM_345622.2		366527	62650308	XM_345622.2	LOC366527	XP_345623.2	ILMN_1368603	0000580603	S	698	CCACAGGAAAGACAAGAGCCCAGTTTCGGCTGACATCCTGCTCCAGGCAG				6q11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S17 (LOC366527), mRNA.					
Rattus norvegicus	RefSeq	GI_62645488-S	ILMN_278134	RGD1563448_PREDICTED	XM_001079643.1	XM_001079643.1		499848	109470432	XM_001079643.1	RGD1563448_predicted	XP_001079643.1	ILMN_1354785	0002480020	S	2901	AGATCCCAAGGGACAGCCCAGTGAAGAGAGGAATGCAACTGCACAGACGG				3q32	PREDICTED: Rattus norvegicus similar to hypothetical protein 4931417A20 (predicted) (RGD1563448_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576194-S	ILMN_297350	OLR1345	NM_001000753.1	NM_001000753.1		405023	47576194	NM_001000753.1	Olr1345	NP_001000753.1	ILMN_1350656	0000610551	S	833	ATACAGTTCTCACACCCATCTTGAACCCCTTGATCTACTGCCTGAGGAAC	9	-	91717937-91717986	9q36	Rattus norvegicus olfactory receptor 1345 (Olr1345), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1345	Olr1345
Rattus norvegicus	RefSeq	GI_34879317-S	ILMN_63676	LOC291616	XM_225993.2	XM_225993.2		291616	34879317	XM_225993.2	LOC291616	XP_225993.2	ILMN_1363042	0005340711	S	331	TCACTGGACATCCCAACATCACTGGACATCCCAACATCACTGGGCATCCC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC291616), mRNA.					
Rattus norvegicus	RefSeq	GI_62660771-S	ILMN_54473	LOC360975	XM_573650.1	XM_573650.1		360975	62660771	XM_573650.1	LOC360975	XP_573650.1	ILMN_1354780	0000520524	S	3912	GGCAGGTCAGAAGCAGATCAATGGATAAGGGCAAGGTGTCCCGAGGAGCC				14q21	PREDICTED: Rattus norvegicus similar to oxoglutarate dehydrogenase (lipoamide) (LOC360975), mRNA.					
Rattus norvegicus	RefSeq	GI_62666288-S	ILMN_67192	SESN1_PREDICTED	XM_215423.4	XM_215423.4		294518	109509614	XM_215423.4	Sesn1_predicted	XP_215423.2	ILMN_1353298	0003710300	S	2237	CCTCTCATCCTGGAGGGCAGCTATCTTGTGCGGGATTTTTGTTTCCAGCA	20	+	45877507-45877556	20q13	PREDICTED: Rattus norvegicus sestrin 1 (predicted) (Sesn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659634-S	ILMN_60366	RCSD1_PREDICTED	XM_341147.3	XM_341147.3		360872	109498130	XM_341147.3	Rcsd1_predicted	XP_341148.3	ILMN_1359700	0002650377	S	2413	CAGACTCAGGAGGCATGAGTTGGGGCCGTCAGCCCGTTTTCATCAGGAAG	13	-	81370915-81370964	13q23	PREDICTED: Rattus norvegicus RCSD domain containing 1 (predicted) (Rcsd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46048608-S	ILMN_297571	CTNNB1	NM_053357.2	NM_053357.2		84353	46048608	NM_053357.2	Ctnnb1	NP_445809.2	ILMN_1352752	0002360253	S	1964	CATATGCGGCTGCTGTTCTATTCCGAATGTCTGAGGACAAGCCACAGGAC	8	+	125986005-125986054	8q32	Rattus norvegicus catenin (cadherin associated protein), beta 1 (Ctnnb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence ISS]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome [goid 30877] [evidence ISS]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence ISS]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A functional unit located near the cell apex at the points of contact between epithelial cells, which in vertebrates is composed of the tight junction, the zonula adherens, and desmosomes and in invertebrates is composed of the subapical complex (SAC), the zonula adherens and the septate junction. Functions in the regulation of cell polarity, tissue integrity and intercellular adhesion and permeability [goid 43296] [evidence ISS]; A functional unit located near the cell apex at the points of contact between epithelial cells, which in vertebrates is composed of the tight junction, the zonula adherens, and desmosomes and in invertebrates is composed of the subapical complex (SAC), the zonula adherens and the septate junction. Functions in the regulation of cell polarity, tissue integrity and intercellular adhesion and permeability [goid 43296] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence ISS]; The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; The formation of the endoderm during gastrulation [goid 1706] [evidence ISS]; The formation of the endoderm during gastrulation [goid 1706] [evidence IEA]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence ISS]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IEA]; The process by which a cell becomes committed to become part of the endoderm [goid 1711] [evidence ISS]; The process by which a cell becomes committed to become part of the endoderm [goid 1711] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation [goid 7398] [evidence ISS]; The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation [goid 7398] [evidence IEA]; The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine [goid 7494] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; The establishment, maintenance and elaboration of the anterior/posterior axis [goid 9948] [evidence ISS]; The establishment, maintenance and elaboration of the dorsal/ventral axis [goid 9950] [evidence ISS]; The establishment, maintenance and elaboration of the dorsal/ventral axis [goid 9950] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; The multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system [goid 14010] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IDA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation [goid 30858] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation [goid 30858] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte differentiation [goid 32331] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte differentiation [goid 32331] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IDA]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the arm are generated and organized. Morphogenesis pertains to the creation of form. In humans, the arms are the two upper limbs of the body from the shoulder to the hand [goid 35117] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the arm are generated and organized. Morphogenesis pertains to the creation of form. In humans, the arms are the two upper limbs of the body from the shoulder to the hand [goid 35117] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEP]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEP]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that modulates the frequency, rate or extent of osteoblast differentiation [goid 45667] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IEP]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence ISS]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes [goid 60070] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes [goid 60070] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with the alpha subunit of the catenin complex [goid 45294] [evidence ISS]; Interacting selectively with the alpha subunit of the catenin complex [goid 45294] [evidence IEA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IDA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IDA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence ISS]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IPI]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IEA]	Catnb	Catnb
Rattus norvegicus	RefSeq	GI_62656267-S	ILMN_57231	RGD1560850_PREDICTED	XM_573119.2	XM_573119.2		497932	109488345	XM_573119.2	RGD1560850_predicted	XP_573119.2	ILMN_1350484	0000780082	S	2826	GCTGCAGGTACAGCTGGCGGTTCACCAGTAGAGCACTTGCCTCGTGTATG	10	+	55303853-55303902	10q24	PREDICTED: Rattus norvegicus similar to Expressed sequence BB220380 (predicted) (RGD1560850_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656265-S	ILMN_57231	RGD1560850_PREDICTED	XM_573119.2	XM_573119.2		497932	109488345	XM_573119.2	RGD1560850_predicted	XP_573119.2	ILMN_1362306	0001940632	S	548	GTCGCCTTGGACTGTGCCATAAGGCTGAAAACAGAGACGGCTGTCCCAGG	10	+	55278497-55278545:55278716-55278716	10q24	PREDICTED: Rattus norvegicus similar to Expressed sequence BB220380 (predicted) (RGD1560850_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758433-S	ILMN_263238	DAO	NM_053626.1	NM_053626.1		114027	16758433	NM_053626.1	Dao	NP_446078.1	ILMN_1374184	0006510408	S	1384	GCTGCAACGACTGTACTAAGGCTGGTCCTACTGGGTGGCAGGGTCTGTGT	12	-	43627864-43627913	12q16	Rattus norvegicus D-amino-acid oxidase (Dao), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]	The chemical reactions and pathways involving leucine, 2-amino-4-methylpentanoic acid [goid 6551] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: a D-amino acid + H2O + O2 = a 2-oxo acid + NH3 + H2O2 [goid 3884] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665576-S	ILMN_277573	OLR1731_PREDICTED	XM_001074906.1	XM_001074906.1		294188	109509702	XM_001074906.1	Olr1731_predicted	XP_001074906.1	ILMN_1351426	0000110139	S	635	TCAACAGGTGGCTGCTCAATACTCTCACAGGGACCGTTGCCATTGGTCTC				20p12	PREDICTED: Rattus norvegicus olfactory receptor 1731 (predicted) (Olr1731_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981213-S	ILMN_275408	MMP7	NM_012864.1	NM_012864.1		25335	6981213	NM_012864.1	Mmp7	NP_036996.1	ILMN_1358354	0004060017	S	843	GCAGACAGTTTCTGGAATGAGCAAACGCCCTTCCTGAGCCACACTTACTC	8	+	4533565-4533614	8q11	Rattus norvegicus matrix metallopeptidase 7 (Mmp7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MPMM	MPMM
Rattus norvegicus	RefSeq	GI_62660237-S	ILMN_55786	RGD1560086_PREDICTED	XM_577320.2	XM_577320.2		501897	109499512	XM_577320.2	RGD1560086_predicted	XP_577320.2	ILMN_1355911	0004570647	S	714	CCTGGCACCCCTCCACAAGATGACCCTCTCTAATAGCACTGAAACAAGAG	14	-	15609253-15609302	14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1560086_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663638	ILMN_277791	RGD1308114	NM_001014146.1	NM_001014146.1		361253	62079026	NM_001014146.1	RGD1308114	NP_001014168.1	ILMN_1650012	0002900129	S	209	AAAAGTGGAGAGACCAGGAGCTGGTGATGACACACGATCTTGGGGACCTC	17	+	55311719-55311735:55518497-55518529	17q12.1	Rattus norvegicus similar to cDNA sequence AF397014 (RGD1308114), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758199-S	ILMN_262835	RAB9A	NM_053458.1	NM_053458.1		84589	16758199	NM_053458.1	Rab9a	NP_445910.1	ILMN_1359834	0006940100	S	579	GGCAGGTATCTACAGAAGAAGCCCAAGCCTGGTGCAAGGACAACGGCGAC	X	+	48686111-48686160	Xq21	Rattus norvegicus RAB9A, member RAS oncogene family (Rab9a), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657789-S	ILMN_48394	RGD1562717_PREDICTED	XM_344015.3	XM_344015.3		363767	109493048	XM_344015.3	RGD1562717_predicted	XP_344016.3	ILMN_1351847	0001190253	S	2619	GGCCGCACAGGACAGCAACTTACCTCTGACCAGTTACCCACCAAAGAAGG	11	-	44854559-44854560:44855321-44855368	11q12	PREDICTED: Rattus norvegicus similar to ABI gene family, member 3 (NESH) binding protein (predicted) (RGD1562717_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647850-S	ILMN_63540	ADAMTS9_PREDICTED	XM_232202.3	XM_232202.3		312566	62647850	XM_232202.3	Adamts9_predicted	XP_232202.3	ILMN_1358241	0002140307	S	8220	AGCCTCTGTTCCGTTTCATGTGATCTCTGGGAAGAACTATGCTGCCTTGG				4q34	PREDICTED: Rattus norvegicus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9 (predicted) (Adamts9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664368-S	ILMN_64127	LOC364861	XM_577616.1	XM_577616.1		364861	62664368	XM_577616.1	LOC364861	XP_577616.1	ILMN_1359806	0002970132	S	72	GGATGCAGGAATGATATTCTGGGCAGCCCCACAGACATCCTGCAAGATGA					PREDICTED: Rattus norvegicus similar to Chain  , Human Translation Initiation Factor Eif1, Nmr, 29 Structures (LOC364861), mRNA.					
Rattus norvegicus	RefSeq	GI_19705456-S	ILMN_297603	MAT2A	NM_134351.1	NM_134351.1		171347	19705456	NM_134351.1	Mat2a	NP_599178.1	ILMN_1359095	0004920673	S	1284	CCCAGACTTGTTGGCGTAGGTTACAGAGAAGCCTTCAAGCTCTGAGGGAA	4	-	105739946-105739995	4q33	Rattus norvegicus methionine adenosyltransferase II, alpha (Mat2a), mRNA.		The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 6556] [evidence TAS]; The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 6556] [evidence IEA]; The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 6556] [evidence ISS]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine [goid 4478] [evidence TAS]; Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine [goid 4478] [evidence IEA]; Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine [goid 4478] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Sams2	Sams2
Rattus norvegicus	RefSeq	GI_62659518-S	ILMN_298668	DD25	XM_001074497.1	XM_001074497.1		360863	109498921	XM_001074497.1	Dd25	XP_001074497.1	ILMN_1367371	0006130463	S	4252	GGACAGACCCAAAAGACAAAAACTGAGAAGAGGGCTTTAAAACGAAGGCG				13q22	PREDICTED: Rattus norvegicus hypothetical protein Dd25 (Dd25), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62664395-S	ILMN_48900	LOC498861	XM_574147.1	XM_574147.1		498861	62664395	XM_574147.1	LOC498861	XP_574147.1	ILMN_1367543	0006760279	S	2585	CAGTTTAGAATGGAGTCAAGAGAAGAAGTGGAGATTTGGGAAATGCGAGT					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC498861), mRNA.					
Rattus norvegicus	RefSeq	GI_62653240-S	ILMN_302582	PIWIL4	XM_001074148.1	XM_001074148.1		315432	109484240	XM_001074148.1	Piwil4	XP_001074148.1	ILMN_1359296	0006770086	S	2221	CTACAGAACCCCCCACTTGGCACTGTCGTGGACTCAGAAGCAACACGTCC					PREDICTED: Rattus norvegicus piwi-like 4 (Drosophila) (Piwil4), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644206-S	ILMN_64520	RGD1565941_PREDICTED	XM_227600.4	XM_227600.4		295378	109465465	XM_227600.4	RGD1565941_predicted	XP_227600.4	ILMN_1363934	0002450647	S	3197	GTTGATCCTGCACCAAAATCTCAGGCAACACAGACAGAAACCTGCACGCC	2	+	205324421-205324470	2q34-q41	PREDICTED: Rattus norvegicus similar to Vav 3 oncogene (predicted) (RGD1565941_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651844-S	ILMN_269258	RGD1562467_PREDICTED	XM_234966.3	XM_234966.3		299663	62651844	XM_234966.3	RGD1562467_predicted	XP_234966.3	ILMN_1355657	0001780286	S	1521	CTGCATTTCAAGACTTTGCTGCCTCCCTCGGGCTCCAAAGAAAAAACCCC	7	-	17091310-17091359	7q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1562467_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645929-S	ILMN_277314	RGD1563120_PREDICTED	XM_001081289.1	XM_001081289.1		499895	109470881	XM_001081289.1	RGD1563120_predicted	XP_001081289.1	ILMN_1368152	0005390647	S	1257	GGAAAACCTCTCCTCCAGACATCTTGTGACAGACAACCCAGGGCAGGCGC				3q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210009G21 (predicted) (RGD1563120_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650506-S	ILMN_63211	LOC500634	XM_576008.1	XM_576008.1		500634	62650506	XM_576008.1	LOC500634	XP_576008.1	ILMN_1354366	0000840091	S	830	TTGCAGAGCGCATTGACCAGCAGGGACCACACAGTGCAACTCACCACCTC					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25143 (LOC500634), mRNA.					
Rattus norvegicus	RefSeq	GI_62651679-S	ILMN_269347	TLE2	NM_001039013.1	NM_001039013.1		299636	84781673	NM_001039013.1	Tle2	NP_001034102.1	ILMN_1361447	0006110273	S	2232	GGACAAGAAGGCCACTGTGTATGAGGTGGTGTACTGAACCATGTGCTGCC	7	-	9592366-9592379:9592380-9592415	7q11	Rattus norvegicus transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) (Tle2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC124808	MGC124808
Rattus norvegicus	RefSeq	GI_62656531-S	ILMN_54555	LOC287522	XM_220702.4	XM_220702.4		287522	109488524	XM_220702.4	LOC287522	XP_220702.4	ILMN_1357082	0006420438	S	5816	GGCCATTGACTTGGGGCTGGGGGGAAAATGGGGAGAACCTTTCTTCTTTC	10	+	62470509-62470558	10q24	PREDICTED: Rattus norvegicus similar to Telomerase-binding protein EST1A (Ever shorter telomeres 1A) (Telomerase subunit EST1A) (EST1-like protein A) (LOC287522), mRNA.					
Rattus norvegicus	RefSeq	GI_62650790-S	ILMN_54630	ARID4A_PREDICTED	XM_234281.4	XM_234281.4		314205	109478255	XM_234281.4	Arid4a_predicted	XP_234281.3	ILMN_1361916	0006200050	S	5014	CACTCTTTGGATGGCAATTGTTGTCAGCTGTCCCTTTTGCAGGGGCTGCG	6	+	93201624-93201673	6q24	PREDICTED: Rattus norvegicus AT rich interactive domain 4A (Rbp1 like) (predicted) (Arid4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663396-S	ILMN_52232	RGD1565934_PREDICTED	XM_573999.2	XM_573999.2		498727	109504804	XM_573999.2	RGD1565934_predicted	XP_573999.2	ILMN_1357942	0001990333	S	637	GACCTCAGAGACTCAAGGCAAGAAGCAGCCAAGCACTTCATCCACAGTTG	17	-	27129850-27129899	17p12	PREDICTED: Rattus norvegicus similar to nucleolar protein 7, 27kDa (predicted) (RGD1565934_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641432-S	ILMN_63013	RGD1562061_PREDICTED	XM_219062.4	XM_219062.4		293310	109459180	XM_219062.4	RGD1562061_predicted	XP_219062.4	ILMN_1372921	0006510592	S	1343	GGGGCAGGAATGCTCCAGACAAGGACAATCAACCAGGGCACAATGCTGAC	1	-	162371358-162371407	1q33	PREDICTED: Rattus norvegicus similar to DUB-1 (predicted) (RGD1562061_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655173-S	ILMN_70300	ZFPN1A2_PREDICTED	XM_237228.4	XM_237228.4		301476	109486228	XM_237228.4	Zfpn1a2_predicted	XP_237228.4	ILMN_1350296	0006760180	S	2243	CTACAAGGATGAGTTGAATTGTTATGGGTTCTGTGTTTACCTCCCCTACG	9	-	68447395-68447444	9q32	PREDICTED: Rattus norvegicus zinc finger protein, subfamily 1A, 2 (Helios) (predicted) (Zfpn1a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090348-S	ILMN_276552	FAM101B	NM_001007611.1	NM_001007611.1		287534	56090348	NM_001007611.1	Fam101b	NP_001007612.1	ILMN_1358574	0003290706	S	1210	GCTCAGAAAGTTCAGCCGTGCCTATGTTAATCGCTAGGGGGGTGGGGAGC	10	-	63384526-63384575	10q24	Rattus norvegicus family with sequence similarity 101, member B (Fam101b), mRNA.				MGC94755	MGC94755
Rattus norvegicus	RefSeq	GI_62638404-S	ILMN_47986	LOC365076	XM_574287.1	XM_574287.1		365076	62638404	XM_574287.1	LOC365076	XP_574287.1	ILMN_1367986	0003170576	S	827	AATGTCCCCAAGGACTAGATAGGAACCAGGGACCAGCGCACAGGGCAGTG				1p11	PREDICTED: Rattus norvegicus similar to Histone deacetylase 1 (HD1) (LOC365076), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]	Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393386-S	ILMN_271444	GABRA3	NM_017069.1	NM_017069.1		24947	8393386	NM_017069.1	Gabra3	NP_058765.1	ILMN_1358002	0000510086	S	1742	CAGCAACCAGATCACCCATGAAGCATCCAAATCCCAAACCCCAGAGCTCC				Xq37	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 3 (Gabra3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence TAS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948395-S	ILMN_278181	TUSC3	NM_001004212.1	NM_001004212.1		290783	51948395	NM_001004212.1	Tusc3	NP_001004212.1	ILMN_1362463	0000520746	S	1112	CGGGAAAAGACGGATCATTTGCCTCGTGGGATTGGGCCTGGTGGTCTTCT	16	-	56768752-56768788:56771242-56771254	16q12.1	Rattus norvegicus tumor suppressor candidate 3 (Tusc3), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected [goid 8250] [evidence ISS]			MGC94243	MGC94243
Rattus norvegicus	RefSeq	GI_16758827-S	ILMN_283294	KCNH2	NM_053949.1	NM_053949.1		117018	16758827	NM_053949.1	Kcnh2	NP_446401.1	ILMN_1370853	0004120471	S	3552	CTCCTTGGAGACCCTGGTTTGAAGGGGAGAACAGTGCAGGAGCACCTCCT	4	+	6223956-6224005	4q11	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 2 (Kcnh2), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA];  [goid 5242] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	ERG1	ERG1
Rattus norvegicus	RefSeq	GI_62644864-S	ILMN_52698	RGD1310887_PREDICTED	XM_231128.4	XM_231128.4		296623	109467994	XM_231128.4	RGD1310887_predicted	XP_231128.4	ILMN_1370901	0002630050	S	1696	CGTATCGGAGCATGTTAGCCCTGTGCTGGCCTTTGGCTTCCTCGGACCCA	3	+	9428839-9428888	3p12	PREDICTED: Rattus norvegicus similar to CG12125-PA (predicted) (RGD1310887_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27692514-S	ILMN_285343	RGD1560109_PREDICTED	XM_227352.1	XM_227352.1		310597	27692514	XM_227352.1	RGD1560109_predicted	XP_227352.1	ILMN_1351708	0002690215	S	578	TTGTAGCTGGCCAGGAATTCAGAGCTCACAAGGCCATCCTAGCAGGTCAC	2	-	187107524-187107573	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1560109_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660109-S	ILMN_48132	LOC498327	XM_573551.1	XM_573551.1		498327	62660109	XM_573551.1	LOC498327	XP_573551.1	ILMN_1351902	0006110348	S	2430	GCCTAGAGACTCCAGTGGAAAGTCCGAAACCCCTGTATCCCACAGACAGC				14p22	PREDICTED: Rattus norvegicus similar to ATP-binding cassette, subfamily G, member 3 (LOC498327), mRNA.					
Rattus norvegicus	RefSeq	GI_62655303	ILMN_55859	LOC503260	XM_578795.1	XM_578795.1		503260	62655303	XM_578795.1	LOC503260	XP_578795.1	ILMN_1649727	0005340064	S	353	ACAACGGCAGCAGCTGTGAGGATGCTAACCTGCCATGGAAGCCGAAATTG					PREDICTED: Rattus norvegicus similar to Amyotrophic lateral sclerosis 2 chromosome region candidate gene protein 19 homolog (Partitioning-defective 3-like protein) (PAR3-L protein) (LOC503260), mRNA.					
Rattus norvegicus	RefSeq	GI_62658021-S	ILMN_66891	LOC498098	XM_579783.1	XM_579783.1		498098	62658021	XM_579783.1	LOC498098	XP_579783.1	ILMN_1352836	0004200441	S	647	GTTGGCTTCACCAGGGCATCCAAGAGATGGTAAAGGCATCTGCAGTGCTG					PREDICTED: Rattus norvegicus LOC498098 (LOC498098), mRNA.					
Rattus norvegicus	RefSeq	GI_11968079-S	ILMN_278405	PRKCZ	NM_022507.1	NM_022507.1		25522	11968079	NM_022507.1	Prkcz	NP_071952.1	ILMN_1363462	0002370068	S	2227	CTCGATGCACTGATCCGCTCCAGGAAAAGTTAGCGTGTAATGCCCTGAGG	5	-	172062019-172062068	5q36	Rattus norvegicus protein kinase C, zeta (Prkcz), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; The region that lies just beneath the plasma membrane on the apical edge of a cell [goid 45179] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IMP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IMP]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence IMP]; The series of molecular signals that results in the upregulation of phospholipase D activity in response to the initial signal [goid 31584] [evidence IMP]; Any process that initiates the activity of the inactive enzyme protein kinase B [goid 32148] [evidence IMP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IMP]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the directed movement of a protein into, out of, within or between cells [goid 51222] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence IDA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IMP]; The process in which membrane potential changes in the hyperpolarizing direction from the resting potential, usually from negative to more negative [goid 60081] [evidence IMP]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence TAS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS];  [goid 4700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI];  [goid 15459] [evidence IMP]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid [goid 43274] [evidence IPI]	r14-3-3; Pkcz; 14-3-3-zetaisoform	r14-3-3; Pkcz; 14-3-3-zetaisoform
Rattus norvegicus	RefSeq	GI_21687007-S	ILMN_295728	CACNG3	NM_080691.1	NM_080691.1		140724	21687007	NM_080691.1	Cacng3	NP_542422.1	ILMN_1366333	0002360181	S	673	CCGCCCTACAGGTATAGATTCCGAAGACGGTCAAGTTCTCGCTCCACTGA	1	+	181593815-181593864	1q36	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 3 (Cacng3), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865587-A	ILMN_285604	ACE2	NM_001012006.1	NM_001012006.1		302668	58865587	NM_001012006.1	Ace2	NP_001012006.1	ILMN_1376884	0005670672	S	2239	GGTGTCGTGATGGGAACGGTAGTGGTTGGCATTGTTATCCTGATCGTCAC				Xq21	Rattus norvegicus angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 (Ace2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The drinking behavior that is mediated by the action of angiotensin in the brain. Angiotensin stimulates the brain centers that control thirst [goid 3051] [evidence ISS]; The process by which renin-angiotensin modulates the force with which blood passes through the circulatory system [goid 3081] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32800] [evidence ISS]; Any process that modulates the frequency, rate or extent of increases in the diameter of blood vessels [goid 42312] [evidence TAS]; The process during virion attachment where a virion binds to a host cell receptor, resulting in a conformational change of the virus protein [goid 46813] [evidence ISS]	Combining with a virus component to initiate a change in cell activity [goid 1618] [evidence ISS]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IDA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IDA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence IEA]; Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide [goid 4180] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IC ]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence ISS]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence IEA]; Catalysis of the release of C-terminal dipeptides from a polypeptide chain [goid 8241] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758689-S	ILMN_273463	CLTB	NM_053835.1	NM_053835.1		116561	16758689	NM_053835.1	Cltb	NP_446287.1	ILMN_1355578	0001570707	S	644	AGCAAGCAATGTAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCT	17	+	16080939-16080988	17p14	Rattus norvegicus clathrin, light chain (Lcb) (Cltb), mRNA.	A clathrin coat found on a vesicle [goid 30125] [evidence NAS]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A clathrin coat found on a vesicle of the trans-Golgi network [goid 30130] [evidence IEA]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [pmid 3563513] [evidence NAS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [pmid 3563513] [evidence NAS]; A protein coat is added to the synaptic vesicle to form the proper shape of the vesicle and to target the vesicle for transport to its destination [goid 16183] [pmid 3563513] [evidence NAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Enables the directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 5326] [pmid 3563513] [evidence NAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649004-S	ILMN_52288	LOC298012	XM_216381.3	XM_216381.3		298012	62649004	XM_216381.3	LOC298012	XP_216381.2	ILMN_1363089	0004010193	S	3433	ACAGGGCCAGTGTGACCATTCCTTCCGCAGCAGAAACACCATCCATGAGC				5q24	PREDICTED: Rattus norvegicus similar to MHR23B (LOC298012), mRNA.					
Rattus norvegicus	RefSeq	GI_62647446-S	ILMN_67237	LOC500192	XM_575544.1	XM_575544.1		500192	62647446	XM_575544.1	LOC500192	XP_575544.1	ILMN_1375154	0001780278	S	5	GGCAGGAGGAGCAAGATGGAATCACAAACTCAGGCCCTCATATCCCTGCT				4q32	PREDICTED: Rattus norvegicus similar to Ig kappa chain V-IV region precursor (LOC500192), mRNA.					
Rattus norvegicus	RefSeq	GI_62661613-S	ILMN_279993	RGD1559592_PREDICTED	XM_001065077.1	XM_001065077.1		290313	109502574	XM_001065077.1	RGD1559592_predicted	XP_001065077.1	ILMN_1360439	0001170609	S	435	CCAGGATTCCCCCGGGCATTTACTGTGCCTGTCTTCCATTGCTACCAGAG					PREDICTED: Rattus norvegicus RGD1559592 (predicted) (RGD1559592_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653630-S	ILMN_62871	USP28_PREDICTED	XM_236240.4	XM_236240.4		315639	109483442	XM_236240.4	Usp28_predicted	XP_236240.4	ILMN_1352267	0006520735	S	3126	CCGCAGGGGCGTGAAGGAGTCTGTGATTGCTTTGTACCGCAGAAAATGCC	8	+	52301246-52301295	8q23	PREDICTED: Rattus norvegicus ubiquitin specific protease 28 (predicted) (Usp28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656785-S	ILMN_268977	SPAG9_PREDICTED	XM_001081278.1	XM_001081278.1		360600	109491669	XM_001081278.1	Spag9_predicted	XP_001081278.1	ILMN_1354400	0002510114	S	3631	GGCAATGAATGAGTCCATGAGAGACAGGTGGAGATGAGGACGTTGCCTCT				10q26	PREDICTED: Rattus norvegicus sperm associated antigen 9 (predicted) (Spag9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644097	ILMN_59097	RGD1308694_PREDICTED	XM_227522.4	XM_227522.4		295326	109465354	XM_227522.4	RGD1308694_predicted	XP_227522.4	ILMN_1649949	0000780138	S	1056	GACCGTGCTCTTCTGGACTTGTGAGAAATACCCCCACCTCAAGGACTGGC	2	-	196906428-196906477	2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC47256 (predicted) (RGD1308694_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644745-S	ILMN_284886	RGD1560470_PREDICTED	XM_001077786.1	XM_001077786.1		362083	109469566	XM_001077786.1	RGD1560470_predicted	XP_001077786.1	ILMN_1361084	0003120021	S	3064	ACAACCATCTATCCCACGGATCGGCGCACAGGCCGCCCCTTCATGTGCAT				3p13	PREDICTED: Rattus norvegicus similar to Gene model 996 (predicted) (RGD1560470_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654825-S	ILMN_54018	LOC363214	XM_343552.2	XM_343552.2		363214	62654825	XM_343552.2	LOC363214	XP_343553.2	ILMN_1363179	0002370041	S	1258	TTCCCCGCTCTCATAAGGTTCGGGAACGTCTAAGCGCCACGCGGAGCTCA					PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase 20 (LOC363214), mRNA.					
Rattus norvegicus	RefSeq	GI_47577104-S	ILMN_268001	OLR319	NM_001000506.1	NM_001000506.1		309222	47577104	NM_001000506.1	Olr319	NP_001000506.1	ILMN_1367071	0006290086	S	560	GCCTGGCTTGTGGAGACACGCACGTTCATAGGACAGCCCTGTACATCATC	1	+	214724796-214724845	1q43	Rattus norvegicus olfactory receptor 319 (Olr319), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr319	Olr319
Rattus norvegicus	RefSeq	GI_51871600-S	ILMN_283379	TRY10	NM_001004097.1	NM_001004097.1		408247	51871600	NM_001004097.1	Try10	NP_001004097.1	ILMN_1361049	0001770722	S	420	CATTTCTGGCTGGGGCAACACGCTCAGCTTCGGTGTCAATGAACCAGACC	4	-	69053697-69053712:69054145-69054178	4q22	Rattus norvegicus trypsin 10 (Try10), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646329	ILMN_271234	R3HDML_PREDICTED	XM_001070429.1	XM_001070429.1		366245	109471263	XM_001070429.1	R3hdml_predicted	XP_001070429.1	ILMN_1650751	0002680632	S	424	AAGCGCCATTACTCATTCCCAGCTCCAAAGGATTGCACCCCACACTGCCC					PREDICTED: Rattus norvegicus R3H domain (binds single-stranded nucleic acids) containing-like (predicted) (R3hdml_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018545-S	ILMN_263317	SECTM1	NM_199082.1	NM_199082.1		287884	40018545	NM_199082.1	Sectm1	NP_954513.1	ILMN_1371209	0006110324	S	1147	GGATGCCCTGGAAATTGACCGAGCCCCTCCTGTACTCAAAACGTAGACTC				10q32.3	Rattus norvegicus secreted and transmembrane 1 (Sectm1), mRNA.				MGC72571	MGC72571
Rattus norvegicus	RefSeq	GI_18266709-S	ILMN_295090	RCVRN	NM_080901.1	NM_080901.1		140936	18266709	NM_080901.1	Rcvrn	NP_543177.1	ILMN_1372558	0003710685	S	408	GGATGTGAAGAACCTCCCAGATGATGAAAACACCCCAGAGAAGCGGGCTG	10	+	54413577-54413626	10q24	Rattus norvegicus recoverin (Rcvrn), mRNA.		The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence TAS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]	Rcv1	Rcv1
Rattus norvegicus	RefSeq	GI_34576558-S	ILMN_285639	PRKAG2	NM_184051.1	NM_184051.1		373545	34576558	NM_184051.1	Prkag2	NP_908940.1	ILMN_1366667	0003120278	S	1918	ACGTTCATGGAAACAGGCCGAGGTCGCAGGGATGAAGTACCAGAAGACGT	4	+	5667140-5667189	4q11	Rattus norvegicus protein kinase, AMP-activated, gamma 2 non-catalytic subunit (Prkag2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IDA]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IMP]	Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]; Any process that modulates the activity of an enzyme [goid 50790] [evidence IDA]	Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IMP]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62641231-S	ILMN_271204	RGD1562741_PREDICTED	XM_001079392.1	XM_001079392.1		499260	109462807	XM_001079392.1	RGD1562741_predicted	XP_001079392.1	ILMN_1366591	0005340056	S	3692	GAGGAGCCTCAGGGAGGGCAGGAAGATCACAGGGTCTTGGAAAGATAATT				1q36	PREDICTED: Rattus norvegicus similar to otoancorin (predicted) (RGD1562741_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27687434-S	ILMN_48361	RGD1560076_PREDICTED	XM_226796.2	XM_226796.2		294722	109464371	XM_226796.2	RGD1560076_predicted	XP_226796.1	ILMN_1351154	0001240451	S	242	AGGCCATCAGGGCCCTTGTGAAGCCTCAGACTGTCGAGCCCAAGATGCTA	2	+	39456834-39456883	2q14	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1560076_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642367-S	ILMN_60964	NDUFB8_PREDICTED	XM_215269.4	XM_215269.4		293991	109460162	XM_215269.4	Ndufb8_predicted	XP_215269.3	ILMN_1367531	0002680270	S	224	CGTGGTGCCACTTGAGGCACGGAGAGCCTTCCACATGACCAAGGACATGA	1	-	249602070-249602094:249602349-249602373	1q54	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 (predicted) (Ndufb8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718715-S	ILMN_55758	LOC367640	XM_578942.1	XM_578942.1		367640	62718715	XM_578942.1	LOC367640	XP_578942.1	ILMN_1350305	0000430301	S	397	GGATTCTTATGGAGCAGATCCTCAAACCGATGGCAGACGAGGCCCGCAAG					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC367640), mRNA.					
Rattus norvegicus	RefSeq	GI_62654112-S	ILMN_294870	RGD1559935_PREDICTED	XR_008210.1	XR_008210.1		503220	109485110	XR_008210.1	RGD1559935_predicted		ILMN_1369290	0003780181	S	48	GTCGGCGGACAAGCGCGAGAAACTGGCCGTGGTCATTGAGCATTGTACGA				8q31	PREDICTED: Rattus norvegicus similar to Selenoprotein H (predicted) (RGD1559935_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51510896-S	ILMN_273102	BEM46L3	NM_001003928.1	NM_001003928.1		408202	51510896	NM_001003928.1	Bem46l3	NP_001003928.1	ILMN_1370404	0001780348	S	355	CTCCATGGCAGTGCAGAACACAGGTCGTCATTGTTTTACAGAGTCGCAAC	6	+	92279567-92279592:92284002-92284025	6q24	Rattus norvegicus serine protease BEM46-like 3 (Bem46l3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62653182-S	ILMN_62594	LOC367006	XM_345890.2	XM_345890.2		367006	62653182	XM_345890.2	LOC367006	XP_345891.2	ILMN_1369480	0006040253	S	300	CCAGTGTGTCTCATGAAGAAAAGGCGGTCTCTAGACGGAGGCATGGCGGG					PREDICTED: Rattus norvegicus similar to UbiE-YGHL1 fusion protein (LOC367006), mRNA.					
Rattus norvegicus	RefSeq	GI_62645649-S	ILMN_68972	CDAN1_PREDICTED	XM_230494.4	XM_230494.4		311348	109468703	XM_230494.4	Cdan1_predicted	XP_230494.4	ILMN_1350807	0003840056	S	3388	GAAGGATGACTTCCAGGGGCCAGTTCCATTGCAGCTTCTACTCAGCCCAA	3	-	107498752-107498801	3q35	PREDICTED: Rattus norvegicus congenital dyserythropoietic anemia, type I (predicted) (Cdan1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663415-S	ILMN_53245	RGD1562963_PREDICTED	XM_574003.2	XM_574003.2		498729	109504826	XM_574003.2	RGD1562963_predicted	XP_574003.2	ILMN_1356717	0002120064	S	536	CCCTTTACCTGTTGCACCTTGCACTGAAGATGTGTTCTGCAGAGGGGTGG	17	+	29745729-29745778	17p12	PREDICTED: Rattus norvegicus similar to chromosome 6 open reading frame 52 (predicted) (RGD1562963_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978504-S	ILMN_271696	ANXA5	NM_013132.1	NM_013132.1		25673	6978504	NM_013132.1	Anxa5	NP_037264.1	ILMN_1370963	0004070347	S	983	CTATAAGAAGGCCCTGCTGCTCCTCTGTGGAGGCGAGGATGACTGAGGAG	2	-	122949596-122949600:122949601-122949645	2q25	Rattus norvegicus annexin A5 (Anxa5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of coagulation [goid 50819] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IMP]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IMP]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with a receptor that possesses protein tyrosine kinase activity [goid 30971] [evidence IPI]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]	Anx5; MGC93655; LC5	Anx5; MGC93655; LC5
Rattus norvegicus	RefSeq	GI_62645793-S	ILMN_265661	MYEF2	XM_001081059.1	XM_001081059.1		362207	109470759	XM_001081059.1	Myef2	XP_001081059.1	ILMN_1370362	0004070148	S	1660	GGCATCAAGATCAGTGGCAGGGAAATCGATGTGCGCTTGGACCGTAATGC					PREDICTED: Rattus norvegicus myelin basic protein expression factor 2, repressor (Myef2), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645791-S	ILMN_265661	MYEF2	XM_001081059.1	XM_001081059.1		362207	109470759	XM_001081059.1	Myef2	XP_001081059.1	ILMN_1358943	0000360504	S	2401	GGTTCATTTTAACGGCTGGAAACTAGACCGAAAGTTGGGGGTGGTCTGCC					PREDICTED: Rattus norvegicus myelin basic protein expression factor 2, repressor (Myef2), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8567333-S	ILMN_57338	CASQ2	NM_017131.1	NM_017131.1		29209	8567333	NM_017131.1	Casq2	NP_058827.1	ILMN_1357616	0001170040	S	1403	TGACATCACAACCACCCCGTACCCCATTACAGACAGCCCAAGGGGCAGCA				2q34	Rattus norvegicus calsequestrin 2 (Casq2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The volume enclosed by the membranes of the sarcoplasmic reticulum [goid 33018] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47578088-S	ILMN_272817	OLR601	NM_001000512.1	NM_001000512.1		311175	47578088	NM_001000512.1	Olr601	NP_001000512.1	ILMN_1366475	0004560315	S	698	GGAGACGCAAGGCCTTTTCCACCTGTGCTTCCCATCTCACAGTCATCGTG	3	-	71714745-71714794	3q24	Rattus norvegicus olfactory receptor 601 (Olr601), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr601	Olr601
Rattus norvegicus	RefSeq	GI_62642796-S	ILMN_61596	LOC310013	XM_226706.4	XM_226706.4		310013	109464285	XM_226706.4	LOC310013	XP_226706.4	ILMN_1371990	0001400152	S	1773	AGACGTGCCATTTCCACAGAATGCAGGACAGAAGAGCCAGTCAGAGGAGC	2	+	27603259-27603308	2q12	PREDICTED: Rattus norvegicus hypothetical LOC310013 (LOC310013), mRNA.					
Rattus norvegicus	RefSeq	GI_47576228-S	ILMN_291547	OLR1326	NM_001000474.1	NM_001000474.1		300626	47576228	NM_001000474.1	Olr1326	NP_001000474.1	ILMN_1361717	0004610086	S	885	AGCCCTGAGAAAGGTGTTAAGTCAAGTGATGCAACCTTTGGGGCATAAAG	8	+	42825144-42825193	8q22	Rattus norvegicus olfactory receptor 1326 (Olr1326), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1326; ratchr8-42833026-42833964_ORF	Olr1326; ratchr8-42833026-42833964_ORF
Rattus norvegicus	RefSeq	GI_47577316-S	ILMN_265374	OLR716	NM_001000622.1	NM_001000622.1		404814	47577316	NM_001000622.1	Olr716	NP_001000622.1	ILMN_1374628	0006760494	S	540	CCCGCTCTTGCTACTTGCATGTACTGACACCTACCTGATTGGTCTCACTA	3	-	74172369-74172418	3q24	Rattus norvegicus olfactory receptor 716 (Olr716), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr716	Olr716
Rattus norvegicus	RefSeq	GI_62718237-S	ILMN_275785	LOC689497	XM_001070998.1	XM_001070998.1		689497	109513348	XM_001070998.1	LOC689497	XP_001070998.1	ILMN_1351406	0003610673	S	796	GACCAGCAACGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTGCAAGAG	Un|NW_047878.1	+	3223064-3223094:3223815-3223833		PREDICTED: Rattus norvegicus hypothetical protein LOC689497 (LOC689497), mRNA.					
Rattus norvegicus	RefSeq	GI_57113794-S	ILMN_274514	V1RC34	NM_001008922.1	NM_001008922.1		494271	57113794	NM_001008922.1	V1rc34	NP_001008922.1	ILMN_1361762	0001500066	S	641	GCATCAGACATCTAAGAGCATCCCCTGAGAAAAGAGCCACCCAGACCATC	4	+	86436502-86436551	4q24	Rattus norvegicus vomeronasal 1 receptor, C34 (V1rc34), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605633-S	ILMN_302205	FAM158A	NM_001008296.1	NM_001008296.1		290224	56605633	NM_001008296.1	Fam158a	NP_001008297.1	ILMN_1373864	0003450075	S	680	ACTGCCACCTTGATGACATTCGGCAGGACTGGACCAACCAGCGGCTCAAC	15	-	33715850-33715899	15p13	Rattus norvegicus family with sequence similarity 158, member A (Fam158a), mRNA.				MGC105938	MGC105938
Rattus norvegicus	RefSeq	GI_58865889-A	ILMN_280229	UPF3A	NM_001012159.1	NM_001012159.1		361176	58865889	NM_001012159.1	Upf3a	NP_001012159.1	ILMN_1376244	0001940110	S	1197	GCGTCCCTGCGGATGGCAGAGCAAAGCAGCAAGGAGCACAAGGAGTATGA	16	-	80612760-80612760:80612761-80612809	16q12.5	Rattus norvegicus UPF3 regulator of nonsense transcripts homolog A (yeast) (Upf3a), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_24308505-S	ILMN_268555	PRL3A1	NM_153736.1	NM_153736.1		266782	24308505	NM_153736.1	Prl3a1	NP_714958.1	ILMN_1355364	0003800039	S	719	TCCTGGAGCTGAAGAAAATGTCTACCCTGTTTGGATGGGACTGGCAGATG	17	-	44286285-44286334	17p11	Rattus norvegicus Prolactin family 3, subfamily a, member 1 (Prl3a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	PLP-I; Plpi	PLP-I; Plpi
Rattus norvegicus	RefSeq	GI_8394011-S	ILMN_286097	PPM1A	NM_017038.1	NM_017038.1		24666	8394011	NM_017038.1	Ppm1a	NP_058734.1	ILMN_1352550	0007100131	S	1345	ATGGGTGAGGGACTACAGCTTCAGCGATGGAACAGCCAGCCCAGAATGGA	6	+	95198744-95198793	6q24	Rattus norvegicus protein phosphatase 1A, magnesium dependent, alpha isoform (Ppm1a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	Pp2c1; MGC114340	Pp2c1; MGC114340
Rattus norvegicus	RefSeq	GI_6981389-S	ILMN_277176	PPY	NM_012626.1	NM_012626.1		24677	6981389	NM_012626.1	Ppy	NP_036758.1	ILMN_1372081	0002690673	S	162	CCCGGGGGACTATGCTACGCATGAACAGAGGGCTCAATACGAAACTCAGC	10	-	91168507-91168556	10q32.1	Rattus norvegicus pancreatic polypeptide (Ppy), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57163998-S	ILMN_292257	TRYX3	NM_001009174.1	NM_001009174.1		408204	57163998	NM_001009174.1	Tryx3	NP_001009174.1	ILMN_1353307	0002470280	S	372	CACTGTGCCTGTGAATGCCATGTGCTCTGTGTCTACCTGGGCCTACAATC	4	-	68536038-68536087	4q22	Rattus norvegicus trypsin X3 (Tryx3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	try1	try1
Rattus norvegicus	RefSeq	GI_62661288-S	ILMN_298882	OTX2	XM_001057814.1	XM_001057814.1		305858	109501542	XM_001057814.1	Otx2	XP_001057814.1	ILMN_1365900	0003170059	S	1829	TACCTTTGGCTGGAGGTGAGCTGCCCTGCTGTCTCTGGACAAGGATCGAG	15	-	24623060-24623109	15p14	PREDICTED: Rattus norvegicus orthodenticle homolog 2 (Drosophila) (Otx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254720-S	ILMN_292678	AMIGO2	NM_182816.2	NM_182816.2		300186	40254720	NM_182816.2	Amigo2	NP_877968.2	ILMN_1349317	0006040427	S	2946	AGTCACTCCCTACACCCTCACCGCAGCAGACTCAGGTTTGTCCACCTGCG				7q35	Rattus norvegicus adhesion molecule with Ig like domain 2 (Amigo2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence NAS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IPI]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence IPI]; Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43069] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Ali1	Ali1
Rattus norvegicus	RefSeq	GI_62642027-S	ILMN_264550	TMEM2_PREDICTED	XM_001079816.1	XM_001079816.1		309400	109463704	XM_001079816.1	Tmem2_predicted	XP_001079816.1	ILMN_1371213	0006020673	S	4423	GGGATTCAGCGGAAACTTCACCCCATCGTGGACTAGGCTGTTCACCAGTC				1q51	PREDICTED: Rattus norvegicus transmembrane protein 2 (predicted) (Tmem2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641770-S	ILMN_278754	TIGD3_PREDICTED	XM_001071012.1	XM_001071012.1		309174	109463394	XM_001071012.1	Tigd3_predicted	XP_001071012.1	ILMN_1370159	0003140632	S	1309	GCCAAGAGGAGTTTTCTCACTTTGTGGACCTGGAGGATGAGGACCCAGGG				1q43	PREDICTED: Rattus norvegicus tigger transposable element derived 3 (predicted) (Tigd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653340-S	ILMN_265233	ZFP653_PREDICTED	XM_001074185.1	XM_001074185.1		300446	109484282	XM_001074185.1	Zfp653_predicted	XP_001074185.1	ILMN_1350021	0001660176	S	1820	ACAGTGTCAAGTTCCACACGCTCAAAAGCCACCCGGATCACAAACCTGCC				8q13	PREDICTED: Rattus norvegicus zinc finger protein 653 (predicted), transcript variant 1 (Zfp653_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.134302	ILMN_161580	RN.134302	Rn.134302		Rn.134302		3019052	AA892173			ILMN_1530220	0003610139	S	205	TGAAAATAAGCAGTTTTCAGAAGAAAAAGTGTGAGATGAACTAAGAAGTA					EST195976 Normalized rat kidney, Bento Soares Rattus sp. cDNA clone RKIAN24 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_11067428-S	ILMN_284360	SYNPO	NM_021695.1	NM_021695.1		60324	11067428	NM_021695.1	Synpo	NP_067727.1	ILMN_1368169	0006550053	S	1780	AGACCTCATCACGTGCCACCTCGTCACGCGCTTCGTCACGCACTGTCTCA	18	-	56553354-56553403	18q12.1	Rattus norvegicus synaptopodin (Synpo), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641268-S	ILMN_273254	XPO6	XM_001076854.1	XM_001076854.1		293476	109462832	XM_001076854.1	Xpo6	XP_001076854.1	ILMN_1361951	0006180433	S	4185	TGGATGCCAGGGAAGTACCAGAGACCCCACAGAGTGGTTCATGCAGATCA				1q36	PREDICTED: Rattus norvegicus exportin 6 (Xpo6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_10242380-A	ILMN_286646	GRIK5	NM_017262.1	NM_017262.1		24407	10242380	NM_017262.1	Grik5	NP_058958.1	ILMN_1376501	0002810152	S	3007	CCAGGCGGACAGGACGCCGCGATTTTGCCTTCAGTTTCTGGTGAAGTCCA	1	-	80314215-80314264	1q21	Rattus norvegicus glutamate receptor, ionotropic, kainate 5 (Grik5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits [goid 32983] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER [goid 6621] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31630] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane [goid 31630] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IDA]; The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell [goid 51649] [evidence IMP]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA];  [goid 15277] [evidence ISS];  [goid 15277] [evidence IDA];  [goid 15277] [evidence ISS];  [goid 15277] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IMP]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	iGlu5	iGlu5
Rattus norvegicus	RefSeq	GI_62640917-S	ILMN_60873	LOC499208	XM_574494.1	XM_574494.1		499208	62640917	XM_574494.1	LOC499208	XP_574494.1	ILMN_1372747	0006760204	S	345	GGGGTACAGAGCTAAACAAAGAACTCACAGCTGAGGAATGCCGAATGGCT					PREDICTED: Rattus norvegicus similar to Da1-12 (LOC499208), mRNA.					
Rattus norvegicus	RefSeq	GI_62667603-S	ILMN_272449	RGD1559446_PREDICTED	XM_001058108.1	XM_001058108.1		503487	109462355	XM_001058108.1	RGD1559446_predicted	XP_001058108.1	ILMN_1351959	0004480040	S	133	AACCTCATAGAGCATCAGCGCACCCACAGCGGCCGGAAGCCCTACATCTG					PREDICTED: Rattus norvegicus similar to zinc finger protein 92 (predicted) (RGD1559446_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18426865-S	ILMN_278793	ACAA2	NM_130433.1	NM_130433.1		170465	18426865	NM_130433.1	Acaa2	NP_569117.1	ILMN_1357600	0002690538	S	1171	TCGACCCCAGTAAAACCAACGTGAGTGGAGGTGCCATAGCCCTGGGTCAC	18	+	71630659-71630708	18q12.3	Rattus norvegicus acetyl-Coenzyme A acyltransferase 2 (Acaa2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence NAS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_28849944-S	ILMN_278461	CYP2B3	NM_173294.1	NM_173294.1		286953	28849944	NM_173294.1	Cyp2b3	NP_775416.1	ILMN_1364622	0000540242	S	1549	TGGCCCCATTTTTCTGATTCTGGGAGACCTGCTGGAGACCAGGCCCAAGG	1	+	81581723-81581760:81581893-81581904	1q21	Rattus norvegicus cytochrome P450IIB3 (Cyp2b3), mRNA.			Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663719-S	ILMN_64844	LOC364759	XM_344619.2	XM_344619.2		364759	62663719	XM_344619.2	LOC364759	XP_344620.2	ILMN_1370482	0005390368	S	1911	GGAGAACATTGTGTCACCCACAGAACCAGTGAACCTGCACTTACATTAGA				17q12.1	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC364759), mRNA.					
Rattus norvegicus	RefSeq	GI_62647024-S	ILMN_263295	LOC500084	XM_001066092.1	XM_001066092.1		500084	109473269	XM_001066092.1	LOC500084	XP_001066092.1	ILMN_1357511	0001450670	S	691	CAGGCAGAAAGAAGAAGTATCTCCAGAGGCAGTTGGTGTGACCAGTCAGC				4q22	PREDICTED: Rattus norvegicus Ab2-427, transcript variant 1 (LOC500084), mRNA.					
Rattus norvegicus	RefSeq	GI_62639843-S	ILMN_286463	NIPA1_PREDICTED	XM_001054918.1	XM_001054918.1		308668	109462046	XM_001054918.1	Nipa1_predicted	XP_001054918.1	ILMN_1357761	0002030433	S	1000	CAACAGGTGGGGGCTTGAGGAACAGGCATTGGAGGGGGTCTGTGGTTCTT				1q22	PREDICTED: Rattus norvegicus non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human) (predicted) (Nipa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651374-S	ILMN_60443	LOC500743	XM_576122.1	XM_576122.1		500743	62651374	XM_576122.1	LOC500743	XP_576122.1	ILMN_1352292	0006520068	S	64	TCCTGATGGTAGTTGCCCAAAGTGCTCAAGCACAGATCCAGTTGGTACAG					PREDICTED: Rattus norvegicus similar to Ig heavy chain V-I region V35 precursor (LOC500743), mRNA.					
Rattus norvegicus	RefSeq	GI_11067386-S	ILMN_285323	GHRL	NM_021669.1	NM_021669.1		59301	11067386	NM_021669.1	Ghrl	NP_067701.1	ILMN_1351290	0002350593	S	200	TCCACCCAGAGGACAGAGGACAAGCAGAAGAGGCAGAGGAGGAGCTGGAA	4	-	149625652-149625701	4q42	Rattus norvegicus ghrelin (Ghrl), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [pmid 10604470] [evidence IC ]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IDA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; Any process that modulates the frequency, rate or extent of a response to a food stimulus [goid 32095] [evidence IDA]; Any process that activates, maintains, or increases the rate of a response to a food stimulus [goid 32097] [evidence IDA]; Any process that increases appetite [goid 32100] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production [goid 32691] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of locomotion of a cell or organism [goid 40013] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42536] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence ISS]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence ISS]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion [goid 1696] [pmid 17705669] [evidence IDA]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [pmid 17543279] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [pmid 10604470] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [pmid 11756331] [evidence IDA]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence ISS]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [pmid 11756331] [evidence IDA]; Any process that increases appetite [goid 32100] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production [goid 32691] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42536] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45409] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [pmid 17130496] [evidence IDA]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA];  [goid 16608] [evidence IEA];  [goid 16608] [evidence IDA]; Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein [goid 30296] [evidence ISS]; Interacting selectively with a ghrelin receptor [goid 31768] [evidence IMP]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [pmid 10604470] [evidence IPI];  [goid 16608] [pmid 10604470] [evidence IDA]; Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein [goid 30296] [evidence ISS]	ghrelin	ghrelin
Rattus norvegicus	RefSeq	GI_11067436-S	ILMN_296422	MARK2	NM_021699.1	NM_021699.1		60328	11067436	NM_021699.1	Mark2	NP_067731.1	ILMN_1365669	0006510102	S	2475	CAGGGCTCCCCCTCGGTACTGCGGTTGCACAGAGTATTTCGCCTAAACCA	1	-	209958934-209958983	1q43	Rattus norvegicus MAP/microtubule affinity-regulating kinase 2 (Mark2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region that lies just beneath the plasma membrane on the basal edge of a cell [goid 45180] [evidence IEA]; The region that lies just beneath the plasma membrane on the basal edge of a cell [goid 45180] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence ISS]; Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell [goid 45197] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718320-S	ILMN_281141	LOC501362	XM_001074895.1	XM_001074895.1		501362	109515496	XM_001074895.1	LOC501362	XP_001074895.1	ILMN_1372149	0002100097	S	333	GTGCAAGAGAGCTGGAATTGGACACACACCAGTAAAAGAGCTTCCTGAAG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501362), mRNA.					
Rattus norvegicus	RefSeq	GI_62645494-S	ILMN_61783	LOC499849	XM_580027.1	XM_580027.1		499849	62645494	XM_580027.1	LOC499849	XP_580027.1	ILMN_1351044	0001740133	S	463	GCTGAGCATTGTGGCATCGACTCTGGCACCGACATGGTTTTTGATGTCCC					PREDICTED: Rattus norvegicus LOC499849 (LOC499849), mRNA.					
Rattus norvegicus	RefSeq	GI_62662377-S	ILMN_48653	CYP4F18_PREDICTED	XM_224708.3	XM_224708.3		290623	62662377	XM_224708.3	Cyp4f18_predicted	XP_224708.3	ILMN_1361303	0005290180	S	1332	GGAGGTGTATAACCCCTTCCGCTTTGATGCAGACAACGGCGAGGGCAGGT				16p14	PREDICTED: Rattus norvegicus cytochrome P450, family 4, subfamily f, polypeptide 18 (predicted) (Cyp4f18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643139	ILMN_56007	LOC499564	XM_574888.1	XM_574888.1		499564	62643139	XM_574888.1	LOC499564	XP_574888.1	ILMN_1650107	0000580341	S	1224	TACAGACCCTAAGAGAACACAAATGCCAGCCCAGGGTTACTGTATCCTGC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499564), mRNA.					
Rattus norvegicus	RefSeq	GI_47577362-S	ILMN_297333	OLR707	NM_001001065.1	NM_001001065.1		405953	47577362	NM_001001065.1	Olr707	NP_001001065.1	ILMN_1373692	0001400132	S	368	CCATCTGTAAGCCACTGCACTACTTGGCCATCATGAATCGAAGGGTTTGC	3	-	74002380-74002429	3q24	Rattus norvegicus olfactory receptor 707 (Olr707), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr707	Olr707
Rattus norvegicus	RefSeq	GI_62642073-S	ILMN_49757	LOC365431	XM_345010.2	XM_345010.2		365431	62642073	XM_345010.2	LOC365431	XP_345011.2	ILMN_1365470	0000630463	S	615	TTCTGTGCAGGAATGGGAAAAGTGTTGGAGAGGCGAGGGGCTGGCGGTCA					PREDICTED: Rattus norvegicus similar to mKIAA1616 protein (LOC365431), mRNA.					
Rattus norvegicus	RefSeq	GI_62638335	ILMN_277711	PTPRK	NM_001029902.1	NM_001029902.1		360302	71361656	NM_001029902.1	Ptprk	NP_001025073.1	ILMN_1650333	0000380075	S	3766	TCGGAAGGCTCGCCCCTGAAGAGCTCAGGTATCAGCTTTTGGTATGCCGG	1	-	17319229-17319278	1p12	Rattus norvegicus protein tyrosine phosphatase, receptor type, K, extracellular region (Ptprk), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence TAS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]	Rptpk	Rptpk
Rattus norvegicus	RefSeq	GI_62079084-S	ILMN_299914	ALKBH3	NM_001014180.1	NM_001014180.1		362169	62079084	NM_001014180.1	Alkbh3	NP_001014202.1	ILMN_1349127	0001980373	S	890	TGACTGGCAGCACCGAGTGCCCAAGGAATACCACTCCAGAGAACGGAGAG	3	-	78386419-78386459:78387063-78387071	3q31	Rattus norvegicus alkB, alkylation repair homolog 3 (E. coli) (Alkbh3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with damaged DNA [goid 3684] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Hydroxylase, with 2-oxoglutarate as one donor, and incorporation or reduction of one atom each of oxygen into both donors [goid 10302] [evidence ISS]; Hydroxylase, with 2-oxoglutarate as one donor, and incorporation or reduction of one atom each of oxygen into both donors [goid 10302] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: methyl-dCpdG DNA + H2O = dCpdG DNA + methanol. This reaction is the hydrolytic removal of the methyl group on the 5 position of cytosine in DNA [goid 51747] [evidence ISS]; Catalysis of the reaction: methyl-dCpdG DNA + H2O = dCpdG DNA + methanol. This reaction is the hydrolytic removal of the methyl group on the 5 position of cytosine in DNA [goid 51747] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_15011860-S	ILMN_297834	SCN11A	NM_019265.2	NM_019265.2		29701	15011860	NM_019265.2	Scn11a	NP_062138.1	ILMN_1364700	0001740451	S	5525	GAAGGGACTGCAAAGGACACCGACCATAACGGAAGGCCTGGAGGACAGTC	8	-	124724802-124724851	8q32	Rattus norvegicus sodium channel, voltage-gated, type XI, alpha (Scn11a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	NaN	NaN
Rattus norvegicus	RefSeq	GI_62663944-S	ILMN_279028	PCGF4_PREDICTED	XM_001073733.1	XM_001073733.1		307151	109506214	XM_001073733.1	Pcgf4_predicted	XP_001073733.1	ILMN_1369651	0002640739	S	1012	CTCATGGACATTGCCTACATTTACACCTGGAGACGGAATGGCCCACTGCC				17q12.3	PREDICTED: Rattus norvegicus polycomb group ring finger 4 (predicted) (Pcgf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659934-S	ILMN_264006	LOC498308	XM_001067391.1	XM_001067391.1		498308	109499275	XM_001067391.1	LOC498308	XP_001067391.1	ILMN_1358675	0003840300	S	326	CTTTGGGGCCTCATCGATTTCCCTTTCCTGAGGCTTTGGGGACTGAGCTG				13q27	PREDICTED: Rattus norvegicus Da2-20 (LOC498308), mRNA.					
Rattus norvegicus	RefSeq	GI_62639912-S	ILMN_69484	LOC292959	XM_218674.3	XM_218674.3		292959	62639912	XM_218674.3	LOC292959	XP_218674.3	ILMN_1364734	0003870451	S	769	AGCTGGCTAGAGGAGGCAGGAGTTGGGGGGAGCTGAAGCGGGTAGAGAAT					PREDICTED: Rattus norvegicus similar to spinocerebellar ataxia 1 homolog (LOC292959), mRNA.					
Rattus norvegicus	RefSeq	GI_47834343-S	ILMN_271103	OLR1736	NM_001001421.1	NM_001001421.1		405203	47834343	NM_001001421.1	Olr1736	NP_001001421.1	ILMN_1355744	0006770010	S	878	ACAAGGAAGTGAGGAGTGCATTGAATAGGAAGGTGAGGAGATGGCTCTGA	20	+	1365792-1365841	20p12	Rattus norvegicus olfactory receptor 1736 (Olr1736), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or14; Olr1736	Or14; Olr1736
Rattus norvegicus	RefSeq	GI_23618894-S	ILMN_270391	RNF40	NM_153471.1	NM_153471.1		266712	23618894	NM_153471.1	Rnf40	NP_703201.1	ILMN_1360868	0006020403	S	3359	GGCCAGACCTGTTTCTACTGAGAAGGCAGATACATCCTTGCCCCTAAAGG	1	+	186890669-186890718	1q36	Rattus norvegicus ring finger protein 40 (Rnf40), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641404-S	ILMN_61593	LOC499278	XM_574576.1	XM_574576.1		499278	62641404	XM_574576.1	LOC499278	XP_574576.1	ILMN_1363388	0001190035	S	605	CTCACTTGGAGACTTGAGGCAACTAGCCTGTCACCGGATGCCACACTCAC				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700063I17 (LOC499278), mRNA.					
Rattus norvegicus	RefSeq	GI_62664003-S	ILMN_294290	LOC291276	XM_001062951.1	XM_001062951.1		291276	109505999	XM_001062951.1	LOC291276	XP_001062951.1	ILMN_1350773	0003130300	S	179	AGAACTGCCACCTGATGGAAAACATCAACAAGGGCCTGCTACACCGAGGC					PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (LOC291276), mRNA.		The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]	Catalysis of the isomerization of isopentenyl diphosphate into dimethylallyl diphosphate [goid 4452] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643308-S	ILMN_64518	RGD1565052_PREDICTED	XM_574914.2	XM_574914.2		499589	109464709	XM_574914.2	RGD1565052_predicted	XP_574914.2	ILMN_1349428	0001450435	S	1463	ATGTTACGTGCCGTCATCGTCTGCAGGCTTTGCTCTGGTTCCTGTGGGCG	2	+	117192750-117192799	2q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC27085 (predicted) (RGD1565052_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644746-S	ILMN_285207	RGD1307615_PREDICTED	XM_001077827.1	XM_001077827.1		362084	109469570	XM_001077827.1	RGD1307615_predicted	XP_001077827.1	ILMN_1360031	0006980242	S	2983	CATCTGCTACTGCAAAGTGACCCAGGCCCCGCACCGAGTAAGACTGGCAA				3p13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13045 (predicted) (RGD1307615_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644782-S	ILMN_274723	AGPAT2_PREDICTED	XM_001074707.1	XM_001074707.1		311821	109469448	XM_001074707.1	Agpat2_predicted	XP_001074707.1	ILMN_1371815	0003610672	S	1054	TCGAGCCTGTGCCTCCAGAATCCAGCAAGAGGGCTGACCCACAAGACCAC				3p13	PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) (predicted) (Agpat2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222317-A	ILMN_277920	LY49I4	NM_001009495.1	NM_001009495.1		494204	57222317	NM_001009495.1	Ly49i4	NP_001009495.1	ILMN_1376803	0005290292	S	972	TGGCATAACAGCAGACACAGTATTCCCTCTTGGCACATGGAGGAGCTTGC	4	-	168023893-168023942	4q42	Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647983	ILMN_277920	LY49I4	NM_001009495.1	NM_001009495.1		494204	57222317	NM_001009495.1	Ly49i4	NP_001009495.1	ILMN_1650441	0000460253	S	1267	CCTTTTGAGACGAGGAACTGTGGAAAGGAGGACTGGAGGGGGTGATGACT	4	-	168023598-168023647	4q42	Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576616-S	ILMN_267096	OLR859	NM_001000585.1	NM_001000585.1		366458	47576616	NM_001000585.1	Olr859	NP_001000585.1	ILMN_1360841	0003140524	S	783	GTACATGAACCCCGGGGCCAATGCTTCCCCAGAGAGGGACAAGAAACTGG	5	+	139216549-139216598	5q36	Rattus norvegicus olfactory receptor 859 (Olr859), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr859	Olr859
Rattus norvegicus	RefSeq	GI_62665793-S	ILMN_66369	LOC499412	XM_574728.1	XM_574728.1		499412	62665793	XM_574728.1	LOC499412	XP_574728.1	ILMN_1361845	0004590402	S	1795	CTGTTGGAACAAGTCCCCAGGTCCAGCCCAAGCGTGGATCCCAAAGGTTG					PREDICTED: Rattus norvegicus similar to WD repeat domain 4 (LOC499412), mRNA.					
Rattus norvegicus	RefSeq	GI_62646611-S	ILMN_271239	RGD1561842_PREDICTED	XM_001058797.1	XM_001058797.1		499964	109472900	XM_001058797.1	RGD1561842_predicted	XP_001058797.1	ILMN_1359418	0006130142	S	1368	GCGGGCCGACCGGCCAGGTCTTAGGACCGCGCAAAACAATGCAATAATTT				4q11	PREDICTED: Rattus norvegicus similar to engrailed protein (predicted) (RGD1561842_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659867-S	ILMN_52647	RGD1564463_PREDICTED	XM_223005.4	XM_223005.4		289322	109498299	XM_223005.4	RGD1564463_predicted	XP_223005.2	ILMN_1373274	0001340348	S	918	GAGCCCCTACTCCAGGATAAAGAGGCCACCGAAAGGGAACGAGGTTCTAC	13	+	96847857-96847906	13q26	PREDICTED: Rattus norvegicus similar to Mdes protein (predicted) (RGD1564463_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649750-S	ILMN_68374	LOC366476	XM_578493.1	XM_578493.1		366476	62649750	XM_578493.1	LOC366476	XP_578493.1	ILMN_1350302	0001580435	S	258	GTGGACCAGAATGGCCTTCTGTGGGAAGTCCTGACGGTTGGAGACTTTGG					PREDICTED: Rattus norvegicus hypothetical LOC366476 (LOC366476), mRNA.					
Rattus norvegicus	RefSeq	GI_9507110-S	ILMN_265655	SLC14A1	NM_019346.1	NM_019346.1		54301	9507110	NM_019346.1	Slc14a1	NP_062219.1	ILMN_1366471	0002570086	S	1066	GCCTACTTTGGAGCCTGTATGACACACCTGATGGCTGCGGTTCACCTGCC	18	-	75024443-75024487:75026237-75026241	18q12.3	Rattus norvegicus solute carrier family 14 (urea transporter), member 1 (Slc14a1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IEA]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IDA]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence ISS]; The directed movement into, out of or within the cell of urea, the water-soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle [goid 15840] [evidence IEA]	Enables the directed movement of water (H2O) into, out of, within or between cells [goid 5372] [evidence ISS]; Enables the directed movement of water (H2O) into, out of, within or between cells [goid 5372] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence IDA]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence ISS]; Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals [goid 15204] [evidence IEA]; Catalysis of the reaction: Catalysis of the reaction: ATP + ubiquitin + protein N-ubiquityl(n)lysine = AMP + diphosphate + protein N-ubiquityl(n+1)lysine, i.e. the ligation of ubiquitin moieties, via isopeptide bonds, to extend the length of the multiubiquitin chain attached to a substrate protein [goid 34450] [evidence ISS]	UT-B; HUT11; UTB1; UT3; UrT2	UT-B; HUT11; UTB1; UT3; UrT2
Rattus norvegicus	RefSeq	GI_12018321-S	ILMN_289775	TMPRSS11D	NM_001033652.1	NM_001033652.1		64565	75905476	NM_001033652.1	Tmprss11d	NP_001028824.1	ILMN_1371717	0005290735	S	1508	GAGGAAAACGCGCCGCCTCCCGTGAAGTCTGTACCCAAGTGCCTGATTCA	14	+	23535856-23535905	14p21	Rattus norvegicus transmembrane protease, serine 11d (Tmprss11d), transcript variant 1, mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Asp	Asp
Rattus norvegicus	RefSeq	GI_61556899-S	ILMN_277819	CAPG	NM_001013086.1	NM_001013086.1		297339	61556899	NM_001013086.1	Capg	NP_001013104.1	ILMN_1357023	0006590037	S	1186	TCTACATCTGGAAGGGGAGAAAAGCCAATGAGAAGGAGCGGCAGGCGGCC	4	+	105859492-105859506:105861833-105861867	4q33	Rattus norvegicus capping protein (actin filament), gelsolin-like (Capg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence ISS]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence IEA]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576142-S	ILMN_298802	OLR1378	NM_214828.1	NM_214828.1		287086	47576142	NM_214828.1	Olr1378	NP_999993.1	ILMN_1357742	0006650133	S	779	TCAACCCCTCATCTTTCCATTCATCAGAGGACACGGCAGCCACTGTGTTG	10	-	12609821-12609870	10q12	Rattus norvegicus olfactory receptor 1378 (Olr1378), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	MGC114248; Olr1378	MGC114248; Olr1378
Rattus norvegicus	RefSeq	GI_13786139-S	ILMN_268718	CELSR3	NM_031320.1	NM_031320.1		83466	13786139	NM_031320.1	Celsr3	NP_112610.1	ILMN_1363813	0001450255	S	11520	AAGTCTTCTAACAGCTTGCCCCAAAGGTGGCTCAGGACTGGGGTTCTGTG	8	+	113923641-113923690	8q32	Rattus norvegicus cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) (Celsr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Megf2	Megf2
Rattus norvegicus	RefSeq	GI_62666218-S	ILMN_301849	RGD1563772_PREDICTED	XM_577939.1	XM_577939.1		502458	62666218	XM_577939.1	RGD1563772_predicted	XP_577939.1	ILMN_1355831	0005360692	S	293	TGTCCCGGTCACAAGGTAGCAGCATGCCCTCGGACAGCAGAAGGCCTCAC	20	+	38266181-38266230	20q12	PREDICTED: Rattus norvegicus similar to putative homeobox protein (predicted) (RGD1563772_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34871963	ILMN_283125	RGD1562162_PREDICTED	XR_008163.1	XR_008163.1		366481	109477420	XR_008163.1	RGD1562162_predicted		ILMN_1649986	0002450014	S	266	GATTCGCAAGCTCCCCTTTCAGTGTCTGGAGCGAGAAATTGCTCAGGACC				5q36	PREDICTED: Rattus norvegicus similar to Zgc:56193 (predicted) (RGD1562162_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20531766-S	ILMN_279836	CSNK1D	NM_139060.1	NM_139060.1		64462	20531766	NM_139060.1	Csnk1d	NP_620691.1	ILMN_1371863	0003130519	S	1443	TCTGATCTCACGGGCCGACAAGATACCTCTCGCATGTCCACCTCACAGAG	10	-	110163708-110163709:110172455-110172502	10q32.3	Rattus norvegicus casein kinase 1, delta (Csnk1d), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence TAS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659834-S	ILMN_291423	RGD1566217_PREDICTED	XR_007848.1	XR_007848.1		364062	109499128	XR_007848.1	RGD1566217_predicted		ILMN_1362053	0000630609	S	23	CACGTGGCACCAACGGTGCAAAGACTTGCACAAGCCTGGAAAGTTTCTCC				13q25	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (predicted) (RGD1566217_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662999-S	ILMN_64479	EFNB2_PREDICTED	XM_225050.4	XM_225050.4		306636	109503589	XM_225050.4	Efnb2_predicted	XP_225050.4	ILMN_1349156	0005050347	S	1044	ACCGCAAACACTCTCCACAGCACACGACCACGCTGTCTCTCAGCACACTG	16	+	86227650-86227699	16q12.5	PREDICTED: Rattus norvegicus ephrin B2 (predicted) (Efnb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659460-S	ILMN_49056	TPR	XM_222745.4	XM_222745.4		304862	109498004	XM_222745.4	Tpr	XP_222745.4	ILMN_1362127	0001740424	S	7214	CCTCAACCAGCCAAGACCCCCCTTCCAGCTCCTCCGTAGATACCAGTAGT	13	+	64750582-64750620:64752773-64752783	13q21	PREDICTED: Rattus norvegicus translocated promoter region (Tpr), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62663915-S	ILMN_276418	RGD1309605_PREDICTED	XM_001072337.1	XM_001072337.1		291320	109506187	XM_001072337.1	RGD1309605_predicted	XP_001072337.1	ILMN_1373245	0000940497	S	904	CGTGTGGGATGGCGATAGAGAGTGCTCAGGAATGCAACTTCTCGGTATCC				17q12.3	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310047O13 (predicted) (RGD1309605_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662004-S	ILMN_268207	LOC290396	XM_001074393.1	XM_001074393.1		290396	109502796	XM_001074393.1	LOC290396	XP_001074393.1	ILMN_1358795	0000110497	S	3526	GGCTCTGTTTCTAAAAGCGAATCAGTTCCTGAGGTTGAAGCCCTGCTGGC				15q12	PREDICTED: Rattus norvegicus similar to Protein diaphanous homolog 3 (Diaphanous-related formin-3) (DRF3) (mDIA2) (p134mDIA2) (LOC290396), mRNA.					
Rattus norvegicus	RefSeq	GI_62642954-S	ILMN_69576	RGD1308116_PREDICTED	XM_227081.4	XM_227081.4		310376	109464422	XM_227081.4	RGD1308116_predicted	XP_227081.3	ILMN_1368319	0001450086	S	1215	GGCGACACTACCAGAACCTAAAGACAAGGACCTAAAGAAAGGGTCCCGTG	2	-	51758420-51758469	2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC42105 (predicted) (RGD1308116_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662497-S	ILMN_280632	RGD1307618_PREDICTED	XM_001070654.1	XM_001070654.1		306375	109504033	XM_001070654.1	RGD1307618_predicted	XP_001070654.1	ILMN_1373687	0005690433	S	2209	CCCACGGGCAGCTGGGAATGCTTGTCTTCCGGCATGAAATAGAGGCTCAC				16p14	PREDICTED: Rattus norvegicus similar to chondroitin beta1,4 N-acetylgalactosaminyltransferase (predicted), transcript variant 3 (RGD1307618_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090400-S	ILMN_275467	MGC94207	NM_001007751.1	NM_001007751.1		362946	56090400	NM_001007751.1	MGC94207	NP_001007752.1	ILMN_1364243	0004050154	S	1384	CACCCAGGAGACCGACACCCCACGTCTGCCCAGGATTAGAGGATCATGTC	7	-	114774790-114774839	7q34	Rattus norvegicus similar to RIKEN cDNA C030006K11 (MGC94207), mRNA.					
Rattus norvegicus	RefSeq	GI_13786205-S	ILMN_284308	TPP1	NM_031357.1	NM_031357.1		83534	13786205	NM_031357.1	Tpp1	NP_112647.1	ILMN_1352782	0003140068	S	2021	CACCAGCAGTCCCACCTAATGCTTACCACCTCTGCACTGACCGTATGCTC	1	-	163490783-163490832	1q33	Rattus norvegicus tripeptidyl peptidase I (Tpp1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [pmid 14609438] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 43171] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 43171] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [pmid 14609438] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 43171] [pmid 14609438] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the release of an N-terminal tripeptide from a polypeptide [goid 8240] [evidence IDA]; Catalysis of the release of an N-terminal tripeptide from a polypeptide [goid 8240] [evidence ISS]; Catalysis of the release of an N-terminal tripeptide from a polypeptide [goid 8240] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Catalysis of the release of an N-terminal tripeptide from a polypeptide [goid 8240] [pmid 14609438] [evidence ISS]	Cln2	Cln2
Rattus norvegicus	RefSeq	GI_55741430-S	ILMN_295019	NUDT9	NM_001006991.1	NM_001006991.1		305149	55741430	NM_001006991.1	Nudt9	NP_001006992.1	ILMN_1349382	0005050520	S	1077	TCAAACTCGTGGCAGAGAAGCGAGATGCCCACTGGAGCGAGGACTGTGCT	14	-	6809358-6809407	14p22	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 9 (Nudt9), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate [goid 46032] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate [goid 46032] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of IDP, inosine 5'-diphosphate [goid 46709] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of IDP, inosine 5'-diphosphate [goid 46709] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence ISS]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Catalysis of the reaction: ADP-ribose + H2O = AMP + D-ribose 5-phosphate [goid 47631] [evidence IEA]	MGC94618	MGC94618
Rattus norvegicus	RefSeq	GI_62645285-S	ILMN_51338	LOC497775	XM_579406.1	XM_579406.1		497775	62645285	XM_579406.1	LOC497775	XP_579406.1	ILMN_1357487	0006860576	S	1140	CTTGTAAGTTCTCTCCTTGCTGTCTCGCACTTCCGGGTGGCAAATGTCAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017269 (LOC497775), mRNA.					
Rattus norvegicus	RefSeq	GI_62667481-S	ILMN_64934	LOC317599	XM_229173.3	XM_229173.3		317599	62667481	XM_229173.3	LOC317599	XP_229173.3	ILMN_1348996	0003060053	S	3369	TGTGCGAAGAAGGAGTGCCAGGAGAAATCTGAGCTGTAGAAGGGCATCTG				Xq36	PREDICTED: Rattus norvegicus similar to ATPase, Class VI, type 11C isoform a (LOC317599), mRNA.					
Rattus norvegicus	RefSeq	GI_42538985-S	ILMN_268867	TEPP	NM_201655.1	NM_201655.1		291850	42538985	NM_201655.1	Tepp	NP_970617.1	ILMN_1355989	0001990736	S	851	AGGCTGATCCTTCTATGGCTGGACTGTGCCACCTCAAGGCCCCTAACCAG	19	-	10173159-10173208	19p13	Rattus norvegicus testis/prostate/placenta-expressed protein (Tepp), mRNA.		The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence NAS]			
Rattus norvegicus	RefSeq	GI_62658775-S	ILMN_68656	LOC501833	XM_577245.1	XM_577245.1		501833	62658775	XM_577245.1	LOC501833	XP_577245.1	ILMN_1373541	0004050068	S	315	GACGCCGTTGTCCTGAATCGACACTCTCTCCGATCCAAACGTAGTTCTGC					PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein L51 (LOC501833), mRNA.					
Rattus norvegicus	RefSeq	GI_62718461-S	ILMN_61695	LOC503351	XM_578889.1	XM_578889.1		503351	62718461	XM_578889.1	LOC503351	XP_578889.1	ILMN_1369013	0005690438	S	648	GCTACCAAGAATAGAGTGGGCTTCCTCAAGGGGATGGGCTCACCTGGCTG					PREDICTED: Rattus norvegicus similar to ribosomal protein L7-like 1 (LOC503351), mRNA.					
Rattus norvegicus	RefSeq	GI_62638894-S	ILMN_294489	EPS8L1_PREDICTED	XM_001071045.1	XM_001071045.1		361503	109461174	XM_001071045.1	Eps8l1_predicted	XP_001071045.1	ILMN_1371940	0003140139	S	2227	GATGAGATGGTGGGGTTCCCAGCGCCCCGAAAGACAACAGTCACCAGACT				1q12	PREDICTED: Rattus norvegicus EPS8-like 1 (predicted) (Eps8l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18158430-A	ILMN_267659	NRAS	NM_080766.1	NM_080766.1		24605	18158430	NM_080766.1	Nras	NP_542944.1	ILMN_1376816	0006290068	S	3263	CCTCAAAGTCACAAAGCCTCTCTTCCTGAATTGAAGTGCCTGGCCCACTG	2	+	198302211-198302260	2q34	Rattus norvegicus neuroblastoma ras oncogene (Nras), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32228] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of Rac protein signal transduction [goid 35022] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle [goid 51146] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657294-S	ILMN_296904	LOC689752	XM_001071881.1	XM_001071881.1		689752	109489330	XM_001071881.1	LOC689752	XP_001071881.1	ILMN_1372803	0000050037	S	728	ATGCTGGGAGATGTCCTCAGGGTGGTGGACAAGGACCAGTGGGGCTCGGA	10	-	103358311-103358360	10q32.1	PREDICTED: Rattus norvegicus similar to Cdc42 effector protein 4 (Binder of Rho GTPases 4) (LOC689752), mRNA.					
Rattus norvegicus	RefSeq	GI_62657741-S	ILMN_65615	LOC363748	XM_344006.2	XM_344006.2		363748	62657741	XM_344006.2	LOC363748	XP_344007.2	ILMN_1358137	0000110113	S	74	CACAGATGCTGTTCTAAAGTGTGACGTCAGCAGTTCTCGCCTCTGGCCCG				11q11	PREDICTED: Rattus norvegicus similar to Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome chain 13) (Proteasome component C10-II) (LOC363748), mRNA.					
Rattus norvegicus	RefSeq	GI_62651620-S	ILMN_50802	RGD1304687_PREDICTED	XM_345766.3	XM_345766.3		366783	109480106	XM_345766.3	RGD1304687_predicted	XP_345767.3	ILMN_1370986	0006420707	S	1079	GGAAGGCCACACCTCCATCCCTTTTGGAGAGCAGTAAAGAAGCACTGGAG	7	+	358955-359004	7q11	PREDICTED: Rattus norvegicus similar to CG17807-PA (predicted) (RGD1304687_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660298-S	ILMN_263198	RGD1561381_PREDICTED	XM_001073485.1	XM_001073485.1		498340	109500415	XM_001073485.1	RGD1561381_predicted	XP_001073485.1	ILMN_1374322	0002120600	S	196	GGTATATGTTCAGTTGCATTCAGCGCGCCCACCAGAACACGTTGGAGGTG				14p22	PREDICTED: Rattus norvegicus similar to microsomal glutathione S-transferase 3 (predicted) (RGD1561381_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654536-S	ILMN_297656	LOC367195	XM_001078509.1	XM_001078509.1		367195	109485629	XM_001078509.1	LOC367195	XP_001078509.1	ILMN_1359416	0002690239	S	676	GGGACTTTTGAGAGTGCCCTTAGTCCCTGGGATGGAGCTGACTTGGGGTA				8q32	PREDICTED: Rattus norvegicus similar to 60S RIBOSOMAL PROTEIN L7 (LOC367195), mRNA.					
Rattus norvegicus	RefSeq	GI_16758981-S	ILMN_263890	PTF1A	NM_053964.1	NM_053964.1		117034	16758981	NM_053964.1	Ptf1a	NP_446416.1	ILMN_1359638	0002340204	S	1422	TTCCCCAGAACCTTTGGCAGAACTCTGAACTGGAAGATCTCTGTCCGTGC	17	+	93496434-93496483	17q12.3	Rattus norvegicus pancreas specific transcription factor, 1a (Ptf1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process whose specific outcome is the progression of the exocrine pancreas over time, from its formation to the mature structure. The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [goid 31017] [evidence IDA]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process by which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons [goid 48699] [evidence ISS]; The process by which the anatomical structure of the retina is generated and organized. Morphogenesis pertains to the creation of form [goid 60042] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665868-S	ILMN_69724	AIRE_PREDICTED	XM_228067.3	XM_228067.3		294328	62665868	XM_228067.3	Aire_predicted	XP_228067.3	ILMN_1358605	0005700427	S	1868	CTACCTTGAACTAGAGGGCCAGCACTCCTTTGACGGCATCCTGCAGTGGG				20p12	PREDICTED: Rattus norvegicus autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) (predicted) (Aire_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978696-S	ILMN_299439	CPB1	NM_012533.1	NM_012533.1		24271	6978696	NM_012533.1	Cpb1	NP_036665.1	ILMN_1351743	0006040059	S	974	TGAATGCCCTGGTGAAAGGTGCGGCAAAGGAGCTTGCCACTCTGCATGGC	2	-	105413465-105413514	2q24	Rattus norvegicus carboxypeptidase B1 (tissue) (Cpb1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cpb	Cpb
Rattus norvegicus	RefSeq	GI_62651741-S	ILMN_267245	RGD1305038_PREDICTED	XM_001076512.1	XM_001076512.1		314627	109481573	XM_001076512.1	RGD1305038_predicted	XP_001076512.1	ILMN_1352420	0000580148	S	2161	GAAGGCGAGGACTTTCTGCTCACCATCCAGGAGCCAGGGGGACCCAGCAT				7q11	PREDICTED: Rattus norvegicus similar to Serine/threonine-protein kinase SNK (Serum inducible kinase) (predicted) (RGD1305038_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666887-S	ILMN_289332	RGD1560207_PREDICTED	XR_007770.1	XR_007770.1		501568	109511844	XR_007770.1	RGD1560207_predicted		ILMN_1375027	0006510154	S	1208	ATCGACTTCAAAAAGTGGAATTAGCACTGACAGGGTCTGGACTTCCTGTC				Xq22	PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 22 (predicted) (RGD1560207_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113784-S	ILMN_275629	V1RC20	NM_001008912.1	NM_001008912.1		494263	57113784	NM_001008912.1	V1rc20	NP_001008912.1	ILMN_2039478	0004860608	S	680	CCCAGACCATCTTGCTGCTGGTGATTTTCTTTGTGGTCATGTATTGGGTA	4	+	86002783-86002832	4q24	Rattus norvegicus vomeronasal 1 receptor, C20 (V1rc20), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34865628-S	ILMN_51445	LOC366639	XM_345680.1	XM_345680.1		366639	34865628	XM_345680.1	LOC366639	XP_345681.1	ILMN_1362738	0002570739	S	547	CCGCCAAGCACAAGAAAACTATACCCCAGTTGAGCGACGAGGAGACGACC				6q23	PREDICTED: Rattus norvegicus similar to Aldo-keto reductase family 1, member B8 (LOC366639), mRNA.					
Rattus norvegicus	RefSeq	GI_62650294	ILMN_52535	RGD1562788_PREDICTED	XM_237474.4	XM_237474.4		301665	109477898	XM_237474.4	RGD1562788_predicted	XP_237474.4	ILMN_1650885	0004920605	S	2934	TGCCACTCTGTTTGGGGTTTTTGTAGATATAGGTGTGGGGAAGGCGGGGC	6	-	9412966-9413015	6q12	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1562788_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018293-S	ILMN_277764	TOP1	NM_022615.1	NM_022615.1		64550	12018293	NM_022615.1	Top1	NP_072137.1	ILMN_1349123	0006350309	S	1907	GGGCGCCACCAAAGACCTTTGAGAAGTCAATGATGAACTTGCAGTCTAAG	3	+	151506967-151507016	3q42	Rattus norvegicus topoisomerase (DNA) I (Top1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence IDA]; The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence ISS]; The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number [goid 6265] [evidence IEA]; The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication [goid 6268] [evidence IEA]; The first few specialized divisions of an activated animal egg [goid 40016] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle [goid 3917] [evidence IDA]; Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle [goid 3917] [evidence ISS]; Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle [goid 3917] [evidence IEA]; Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2 [goid 3918] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA that is assembled into chromatin [goid 31490] [evidence IDA]	Ab2-086	Ab2-086
Rattus norvegicus	RefSeq	GI_62656964-A	ILMN_280389	KRT28	NM_001008760.1	NM_001008760.1		360623	56912236	NM_001008760.1	Krt28	NP_001008760.1	ILMN_1376920	0006840139	S	1022	CCACACTGGTGAAGACCGTGGTTGAAGAAATAGATCCGCGTGGTAAGGTC	10	-	88268500-88268549	10q32.1	Rattus norvegicus keratin 28 (Krt28), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Ka41	Ka41
Rattus norvegicus	RefSeq	GI_62646098-S	ILMN_68282	LOC499925	XM_575269.1	XM_575269.1		499925	62646098	XM_575269.1	LOC499925	XP_575269.1	ILMN_1370845	0001940242	S	2912	GCAGCCCACACAAGCAGAGGCAGCCAAGTGGGACAGCTTTATTACTGAGC				3q41	PREDICTED: Rattus norvegicus similar to antimicrobial peptide RY2G5 (LOC499925), mRNA.					
Rattus norvegicus	RefSeq	GI_62664917-S	ILMN_274825	RGD1311099_PREDICTED	XM_001065429.1	XM_001065429.1		307724	109508493	XM_001065429.1	RGD1311099_predicted	XP_001065429.1	ILMN_1361295	0000450333	S	3578	AAGCCGTACTGCAAAGGCGGGAACTGCCTCACAGAAGTGTGCGCTTCACC				19p11	PREDICTED: Rattus norvegicus similar to Fantom protein (predicted) (RGD1311099_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665858-S	ILMN_69289	LOC499421	XM_574739.1	XM_574739.1		499421	62665858	XM_574739.1	LOC499421	XP_574739.1	ILMN_1364921	0004120739	S	808	GAGGAGTTGCGCTGGCTCTCTGGCTTTCCAACCCCAAGCAATGGTCAGAG				20p12	PREDICTED: Rattus norvegicus similar to Homo sapiens fetal lung specific expression~unknown (LOC499421), mRNA.					
Rattus norvegicus	RefSeq	GI_62664594-S	ILMN_64666	SPIRE1_PREDICTED	XM_225864.4	XM_225864.4		307348	109506693	XM_225864.4	Spire1_predicted	XP_225864.4	ILMN_1352060	0001770592	S	4648	CAGCTGTATCCAGGAGAGGCATCGGACTCTGGGGTCAGCCATAAACAACT	18	-	64018278-64018327	18q12.1	PREDICTED: Rattus norvegicus spire homolog 1 (Drosophila) (predicted) (Spire1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664565-S	ILMN_64666	SPIRE1_PREDICTED	XM_225864.4	XM_225864.4		307348	109506693	XM_225864.4	Spire1_predicted	XP_225864.4	ILMN_1362057	0002320039	S	3348	GGTGACTGACAGGTAGTGTTGTGTGCCTGAAATTCCTCAGCTCCTGTGAC	18	-	64019578-64019627	18q12.1	PREDICTED: Rattus norvegicus spire homolog 1 (Drosophila) (predicted) (Spire1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660758-S	ILMN_53773	RGD1564681_PREDICTED	XM_573648.2	XM_573648.2		498406	109499997	XM_573648.2	RGD1564681_predicted	XP_573648.1	ILMN_1364813	0000460010	S	531	GTCACGATGTCACCTGCAAAGGCCCAAAGAAGCGAAGTAGATCAGACGCC	14	-	86357264-86357313	14q21	PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein S24 (predicted) (RGD1564681_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19924072-S	ILMN_272346	TTL	NM_138536.1	NM_138536.1		171572	19924072	NM_138536.1	Ttl	NP_612545.1	ILMN_1364621	0000780647	S	1283	GGACTGGAAGGCACAGAGCCACCTTGGGAAATGTATGGGGTCTGCTCCAG	3	+	116697876-116697925	3q36	Rattus norvegicus tubulin tyrosine ligase (Ttl), mRNA.		A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; Any process that modulates the rate, direction or extent of axon extension [goid 30516] [evidence ISS]; Any process that modulates the rate, direction or extent of axon extension [goid 30516] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IDA]; Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence ISS]; Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649522-S	ILMN_281145	STK40	NM_183056.2	NM_183056.2		360230	71896571	NM_183056.2	Stk40	NP_898879.2	ILMN_1366662	0005130500	S	1816	CTGGAACAGCCTGGCTAGGCCACTGACCCCAGTCCATATAAGCTGACCAC	5	+	145492702-145492751	5q36	Rattus norvegicus serine/threonine kinase 40 (Stk40), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57012423-S	ILMN_299965	RT1-A1	NM_001008827.1	NM_001008827.1		24973	57012423	NM_001008827.1	RT1-A1	NP_001008827.1	ILMN_1351487	0001090048	S	955	GCTGTGGCCATCATTGCAGCTGTGATCATTGGAGCTGTGGTGACTGTTGT	20	+	5059163-5059212	20p12	Rattus norvegicus RT1 class Ia, locus A1 (RT1-A1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1A-1; RT1.A1(N)	RT1A-1; RT1.A1(N)
Rattus norvegicus	RefSeq	GI_62641592-S	ILMN_267027	IFITM6_PREDICTED	XM_219476.3	XM_219476.3		309104	62641592	XM_219476.3	Ifitm6_predicted	XP_219476.3	ILMN_1374737	0006940270	S	568	GTGCATGTACACCACCCTTCATAGATGCCCCTTATCCTGGTCAGAGGCCT	1	-	201204714-201204763	1q41	PREDICTED: Rattus norvegicus interferon induced transmembrane protein 6 (predicted) (Ifitm6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655167-S	ILMN_272525	LOC689998	XM_001072857.1	XM_001072857.1		689998	109486223	XM_001072857.1	LOC689998	XP_001072857.1	ILMN_1369221	0006040706	S	2065	GCACACAGCCCCCTCTCTACTCAACTGTCAGACCCGGATGACTTCACTGG	9	+	65465081-65465130	9q32	PREDICTED: Rattus norvegicus similar to CG18437-PA (LOC689998), mRNA.					
Rattus norvegicus	RefSeq	GI_33469056-S	ILMN_277167	CAMK1G	NM_182842.1	NM_182842.1		171358	33469056	NM_182842.1	Camk1g	NP_878262.1	ILMN_1365119	0004150114	S	2155	GAAAGCTGAGACTATGGACTGTGAGCCTTCTCTCCCAGCCACACACCTCA	13	-	109192995-109193044	13q27	Rattus norvegicus calcium/calmodulin-dependent protein kinase IG (Camk1g), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [evidence ISS]; An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence NAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_17158028-S	ILMN_262890	SLC4A7	NM_058211.1	NM_058211.1		117955	17158028	NM_058211.1	Slc4a7	NP_478118.1	ILMN_1373705	0004730021	S	3682	GAGCGGATGCTTCAGGGTGACGGGGATACTGTGCACCTCCCATTCGAAAG	15	-	12072026-12072053:12072054-12072075	15p16	Rattus norvegicus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (Slc4a7), mRNA.	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	NBC3; NBCn1	NBC3; NBCn1
Rattus norvegicus	RefSeq	GI_56090292-S	ILMN_282690	PDHB	NM_001007620.1	NM_001007620.1		289950	56090292	NM_001007620.1	Pdhb	NP_001007621.1	ILMN_1356584	0006110563	S	1450	CGTGTTGGGACTTCCCCTGACGTGTACTGGGAGACTTACTAGTCAGGAGT	15	+	18743054-18743103	15p14	Rattus norvegicus pyruvate dehydrogenase (lipoamide) beta (Pdhb), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence IDA]	The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate [goid 6086] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2 [goid 4739] [evidence IDA]; Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2 [goid 4739] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC94149	MGC94149
Rattus norvegicus	RefSeq	GI_6978726-S	ILMN_292494	CYCT	NM_012840.1	NM_012840.1		25310	6978726	NM_012840.1	Cyct	NP_036972.1	ILMN_1349918	0007050706	S	120	CAGTGGAGAAAGGTGGGAAGCACAAGACAGGGCCAAATCTCTGGGGCCTT	3	-	59045821-59045870	3q23	Rattus norvegicus cytochrome c, testis (Cyct), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 42743] [evidence ISS]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	CYCTA	CYCTA
Rattus norvegicus	RefSeq	GI_47577700-S	ILMN_264599	OLR578	NM_001000568.1	NM_001000568.1		366109	47577700	NM_001000568.1	Olr578	NP_001000568.1	ILMN_1364186	0004280176	S	204	CTCAGACCTCTGCTATTCCACCGCAGTTGGACCAAAGATGCTGCTGGATC	3	-	71372238-71372287	3q24	Rattus norvegicus olfactory receptor 578 (Olr578), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr578	Olr578
Rattus norvegicus	RefSeq	GI_62656583-S	ILMN_57232	SDF2_PREDICTED	XM_213377.4	XM_213377.4		287470	109488564	XM_213377.4	Sdf2_predicted	XP_213377.1	ILMN_1372523	0004280288	S	890	CATGAAGCCCAGTGAGTTGCTGAGGGCAGAGGTCCATCATGCAGAGCTGT	10	-	64379043-64379092	10q25	PREDICTED: Rattus norvegicus stromal cell derived factor 2 (predicted) (Sdf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576014-S	ILMN_279136	OLR1445	NM_001000958.1	NM_001000958.1		405307	47576014	NM_001000958.1	Olr1445	NP_001000958.1	ILMN_1374419	0002120594	S	702	GAGTAAAGCTGTATCTACCTGTTCTTCCCACCTGACCGTAGCCAGCCTGT	10	+	44817072-44817121	10q22	Rattus norvegicus olfactory receptor 1445 (Olr1445), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1445	Olr1445
Rattus norvegicus	RefSeq	GI_62667066-S	ILMN_269789	HDAC8_PREDICTED	XM_001070606.1	XM_001070606.1		363481	109512083	XM_001070606.1	Hdac8_predicted	XP_001070606.1	ILMN_1374445	0005670010	S	1758	TGCAGTCAAGTGGAGCTGGGTAGGGGAACAGCAGATGGGCAGGTTTGGAC				Xq31	PREDICTED: Rattus norvegicus histone deacetylase 8 (predicted) (Hdac8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079080-S	ILMN_290189	RGD1308600	NM_001014178.1	NM_001014178.1		362090	62079080	NM_001014178.1	RGD1308600	NP_001014200.1	ILMN_1353904	0000940435	S	773	TATCTGCTGCCCGGAGCCCCTGCGGACCTTTATGAGGAGCTGGGCAAACA	3	+	4816702-4816751	3p13	Rattus norvegicus similar to pancreatitis-induced protein 49 (RGD1308600), mRNA.				MGC109181	MGC109181
Rattus norvegicus	RefSeq	GI_62657579-S	ILMN_57049	LOC498049	XM_573249.1	XM_573249.1		498049	62657579	XM_573249.1	LOC498049	XP_573249.1	ILMN_1370352	0005900438	S	798	TCCCTGGTGATGCAGTCAGTGACCTCCGAAAATTGTTACCTCATGAGTCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498049), mRNA.					
Rattus norvegicus	RefSeq	GI_62718632	ILMN_50357	LOC367609	XM_576850.1	XM_576850.1		367609	62718632	XM_576850.1	LOC367609	XP_576850.1	ILMN_1649956	0000840164	S	539	CTCTCCATGGTAGTGGTAGATATGGTGGTGGAAGCTACAATGACTTTGGC					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP) (LOC367609), mRNA.					
Rattus norvegicus	RefSeq	GI_62639390-S	ILMN_299188	RGD1308428_PREDICTED	XR_009297.1	XR_009297.1		308509	109461714	XR_009297.1	RGD1308428_predicted		ILMN_1351837	0001660113	S	5980	GAGGCATCTCTCCAAAGCGCATGTATGTGTGAGTGTCCTTAGCACGGCCA				1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931406P16 (predicted) (RGD1308428_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642433-S	ILMN_64163	NT5C2_PREDICTED	XM_215270.3	XM_215270.3		294016	62642433	XM_215270.3	Nt5c2_predicted	XP_215270.3	ILMN_1354677	0003610452	S	3021	GACACTGGCCCTGTGCAGTACAGCTGTCAACAGTCATAGCCATGGTCTTC					PREDICTED: Rattus norvegicus 5'-nucleotidase, cytosolic II (predicted) (Nt5c2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650489-S	ILMN_283949	RGD1565679_PREDICTED	XM_001073308.1	XM_001073308.1		298892	109479159	XM_001073308.1	RGD1565679_predicted	XP_001073308.1	ILMN_1365466	0005700079	S	339	GGGAAGCTCCAAGGAATCCCTCATTGTGAGGGCAAAGTCTTCTTCAGCTG				6q14	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L27a (L29) (predicted) (RGD1565679_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647365-S	ILMN_63539	RGD1565171_PREDICTED	XM_575508.2	XM_575508.2		500156	109472131	XM_575508.2	RGD1565171_predicted	XP_575508.2	ILMN_1368168	0006100139	S	1153	GTACCGGAGGACAGCAGCAAAACATCTCCCAGGTCCCACAGAAGTGACGG	4	+	94110803-94110852	4q31	PREDICTED: Rattus norvegicus similar to MATH-1 protein (predicted) (RGD1565171_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576308-S	ILMN_289572	OLR1513	NM_001000035.1	NM_001000035.1		287513	47576308	NM_001000035.1	Olr1513	NP_001000035.1	ILMN_1364950	0003940746	S	883	ATGAAGGCTGCTTTGAAGAAACTTTTCCACCGCACCTCCTTCTTATCCCC	10	+	61482771-61482820	10q24	Rattus norvegicus olfactory receptor 1513 (Olr1513), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1513	Olr1513
Rattus norvegicus	RefSeq	GI_20302033-S	ILMN_300792	SMAD9	NM_138872.1	NM_138872.1		85435	20302033	NM_138872.1	Smad9	NP_620227.1	ILMN_1362558	0000580441	S	1473	GCATTTCCACAGAATAGACGAAGGCAGGGGCTTCTACCACTGCAACTCGC	2	+	144030546-144030595	2q26	Rattus norvegicus SMAD family member 9 (Smad9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence IEA]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence IEA]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Smad8; Madh9	Smad8; Madh9
Rattus norvegicus	RefSeq	GI_13540700-S	ILMN_285392	OGG1	NM_030870.1	NM_030870.1		81528	13540700	NM_030870.1	Ogg1	NP_110497.1	ILMN_1359148	0004540253	S	1019	CTCGGGAGCCACCAGCAAAGCGCAAAAAGGGATCTAAGAAGACAGAAGGC	4	+	149218983-149219032	4q42	Rattus norvegicus 8-oxoguanine DNA glycosylase (Ogg1), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence TAS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence ISS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IDA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence ISS]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence IEA]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The disruption of the bond between the sugar in the backbone and the A or G base, causing the base to be removed and leaving a depurinated sugar [goid 45007] [evidence ISS]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence IEA]	Interacting selectively with damaged DNA [goid 3684] [evidence IDA]; Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site [goid 8534] [evidence IDA]; Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site [goid 8534] [evidence ISS]; Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site [goid 8534] [evidence IEA]; Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site [goid 8534] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site [goid 19104] [evidence IDA]; Catalysis of the removal of 8-oxo-7,8-dihydroguanine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar [goid 34039] [evidence ISS]; Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site [goid 8534] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661743-S	ILMN_262566	RGD1310185_PREDICTED	XM_001072262.1	XM_001072262.1		313790	109502728	XM_001072262.1	RGD1310185_predicted	XP_001072262.1	ILMN_1353757	0000870041	S	1083	CTGGGCCCTTCAGTGGGATCTTGCTGCTTTACTCTTCCCAGAGAATCAGC				15q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9030625A04 (predicted) (RGD1310185_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659436-S	ILMN_47945	HRPT2_PREDICTED	XM_222685.3	XM_222685.3		304832	62659436	XM_222685.3	Hrpt2_predicted	XP_222685.3	ILMN_1358656	0005550152	S	2672	ACTTGGGAAGCTGAAGTATGATTTGGGGGAATGAGTATGTGTCAGCGTAG				13q21	PREDICTED: Rattus norvegicus hyperparathyroidism 2 (with jaw tumor) (predicted) (Hrpt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646700-S	ILMN_54350	LOC499985	XM_575339.1	XM_575339.1		499985	62646700	XM_575339.1	LOC499985	XP_575339.1	ILMN_1366820	0003780162	S	2157	TCCCTCTCTGGTGTCCTTGGCAACAACAAGGCCAGGTATCACAGCTATTG				4q11	PREDICTED: Rattus norvegicus similar to fatty acid translocase/CD36 (LOC499985), mRNA.					
Rattus norvegicus	RefSeq	GI_62643614-S	ILMN_56102	DCUN1D1_PREDICTED	XM_227048.4	XM_227048.4		310324	109464684	XM_227048.4	Dcun1d1_predicted	XP_227048.4	ILMN_1350092	0002630538	S	348	GTTCAGGGCGGCCACACAGTGCGAGTTCTCCAAACAGGAGTTCATGGATG	2	-	122371497-122371546	2q25	PREDICTED: Rattus norvegicus DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) (predicted) (Dcun1d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647656-S	ILMN_53833	RGD1559797_PREDICTED	XM_575572.2	XM_575572.2		500221	109472214	XM_575572.2	RGD1559797_predicted	XP_575572.1	ILMN_1357404	0004200170	S	711	CGCACAGCGGTTGGAGGAGCGCGAACGAATCATCAGGGAGATCTGGATGA	4	+	116329096-116329145	4q34	PREDICTED: Rattus norvegicus similar to CDNA sequence BC014699 (predicted) (RGD1559797_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651811-S	ILMN_60900	RGD1565456_PREDICTED	XM_234847.3	XM_234847.3		314589	109480309	XM_234847.3	RGD1565456_predicted	XP_234847.3	ILMN_1353521	0001190167	S	529	ACATCATACACAAAGGAGCGGGGCCGAGGTGGGAGTGGGCGCAGTGCTCG	7	+	13540296-13540345	7q11	PREDICTED: Rattus norvegicus similar to Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant (predicted) (RGD1565456_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653164-S	ILMN_60813	LOC367002	XM_345886.2	XM_345886.2		367002	62653164	XM_345886.2	LOC367002	XP_345887.2	ILMN_1356678	0004810309	S	3114	GGCCATTTGGGGGCAGAAGACCATAGGAGGGATAGAGAAGATTCCTTGCA					PREDICTED: Rattus norvegicus similar to mKIAA0863 protein (LOC367002), mRNA.					
Rattus norvegicus	RefSeq	GI_62651395-S	ILMN_61617	LOC299464	XM_234742.2	XM_234742.2		299464	62651395	XM_234742.2	LOC299464	XP_234742.1	ILMN_1366002	0003170097	S	239	ACGGGAAGTGGAGGTACTAACTACAATGAGAAGTTCAAGGGCAAGGCCAC				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region 93G7 precursor (LOC299464), mRNA.					
Rattus norvegicus	RefSeq	GI_51036651-S	ILMN_279900	SLC33A1	NM_022252.2	NM_022252.2		64018	51036651	NM_022252.2	Slc33a1	NP_071588.2	ILMN_1361158	0004570368	S	1670	AGCTTGGCGGCTCGTGCGTTACAGCTCTGGATGGTTATTATGTGGAATCC	2	-	153769823-153769872	2q31	Rattus norvegicus solute carrier family 33 (acetyl-CoA transporter), member 1 (Slc33a1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence NAS]	Enables the directed movement of acetyl-CoA into, out of, within or between cells. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis [goid 8521] [evidence NAS]	Acatn	Acatn
Rattus norvegicus	RefSeq	GI_47576502-S	ILMN_277829	OLR1619	NM_001000521.1	NM_001000521.1		361033	47576502	NM_001000521.1	Olr1619	NP_001000521.1	ILMN_1366833	0004210520	S	645	CCTCTTCATCATGGCATCTTATATATTGGTCCTGAGAACTGTGTTCAGAC	15	+	26243105-26243154	15p14	Rattus norvegicus olfactory receptor 1619 (Olr1619), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr15-26258161-26259096_ORF; Olr1619	ratchr15-26258161-26259096_ORF; Olr1619
Rattus norvegicus	RefSeq	GI_47576600-S	ILMN_292024	OLR1668	NM_001000267.1	NM_001000267.1		294140	47576600	NM_001000267.1	Olr1668	NP_001000267.1	ILMN_1368337	0005390333	S	560	CTGCCTGTGGGGAGAAGGAGTTTAATGAGCTGGCACTTTCTGTGGTGTGC	20	-	93139-93188	20p12	Rattus norvegicus olfactory receptor 1668 (Olr1668), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1668	Olr1668
Rattus norvegicus	RefSeq	GI_62639376-S	ILMN_52176	LOC361548	XM_341835.2	XM_341835.2		361548	62639376	XM_341835.2	LOC361548	XP_341836.2	ILMN_1374840	0002340403	S	1624	CGGGCACAACCTGGCCTGCTGAAGTGGCTGAAGTTTTGGTAGAACATTCC				1q21	PREDICTED: Rattus norvegicus similar to 1110014F24Rik protein (LOC361548), mRNA.					
Rattus norvegicus	RefSeq	GI_19424147-S	ILMN_273552	ADCYAP1R1	NM_133511.1	NM_133511.1		24167	19424147	NM_133511.1	Adcyap1r1	NP_598195.1	ILMN_1365696	0004670746	S	2550	TACCATGTCCATGACTGTGCCCCTGATTCAAGACCGGATCATGTGGTGGC	4	+	84254851-84254900	4q24	Rattus norvegicus adenylate cyclase activating polypeptide 1 (pituitary) receptor type I (Adcyap1r1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [pmid 11784714] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IDA]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	 [goid 1634] [pmid 11784714] [evidence EXP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA];  [goid 4999] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654430-S	ILMN_56672	LOC503230	XM_578758.1	XM_578758.1		503230	62654430	XM_578758.1	LOC503230	XP_578758.1	ILMN_1361045	0005390576	S	572	ATTACATGATGTCCACCCATGCTGGTGCGCCTCACCTGGAGCTGGTGTGC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC503230), mRNA.					
Rattus norvegicus	RefSeq	GI_62649604-S	ILMN_60804	LOC500544	XM_580082.1	XM_580082.1		500544	62649604	XM_580082.1	LOC500544	XP_580082.1	ILMN_1360979	0005290347	S	225	TGAGCCACAGGATCCACCCAAGAAGAAGGCCAGGGTTGGCCAGAAGGACA					PREDICTED: Rattus norvegicus LOC500544 (LOC500544), mRNA.					
Rattus norvegicus	RefSeq	GI_62649089-S	ILMN_56573	LOC298113	XM_233031.3	XM_233031.3		298113	62649089	XM_233031.3	LOC298113	XP_233031.3	ILMN_1365558	0003710398	S	458	AGAGCGGTGGTCTTCAGGGAGGGTGAATAAGGACAGCCCAAGTTGTCTGC					PREDICTED: Rattus norvegicus similar to alpha-2u-globulin precursor (clone 36) - rat (LOC298113), mRNA.					
Rattus norvegicus	RefSeq	GI_62645530-S	ILMN_283756	OLR763_PREDICTED	XM_001080296.1	XM_001080296.1		296016	109470497	XM_001080296.1	Olr763_predicted	XP_001080296.1	ILMN_1365539	0000630092	S	622	GGGCTAGACATCATGGTCATTGCCAACAGTGGTGTGCTCAGTGTGTGTTC				3q34	PREDICTED: Rattus norvegicus olfactory receptor 763 (predicted) (Olr763_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662239-S	ILMN_57516	LOC498585	XM_573860.1	XM_573860.1		498585	62662239	XM_573860.1	LOC498585	XP_573860.1	ILMN_1367634	0004150463	S	1640	AGGGCAGAGGAGCTCAAGGATCAAGAAAGGGGTTCACAGTGACATCACCC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4933430J11 (LOC498585), mRNA.					
Rattus norvegicus	RefSeq	GI_62645850-S	ILMN_55750	CHCHD5_PREDICTED	XM_215828.3	XM_215828.3		296147	109468801	XM_215828.3	Chchd5_predicted	XP_215828.2	ILMN_1359420	0001400020	S	398	AGTGCGCTGAGCAGGTGCAGCCACCAAGTTCACCCACGACTGGAGAGCTC	3	+	116735269-116735315:116735959-116735961	3q36	PREDICTED: Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain containing 5 (predicted) (Chchd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645337-S	ILMN_275025	LOC680325	XR_005709.1	XR_005709.1		680325	109468369	XR_005709.1	LOC680325		ILMN_1351057	0007100433	S	18056	GCACAGGGAGTTCTTCGGCTGCGGCCCTAAGGAGATTTCGTCTCAAACAG	3	+	66072717-66072766	3q24	PREDICTED: Rattus norvegicus similar to FLJ44048 protein (LOC680325), mRNA.					
Rattus norvegicus	RefSeq	GI_62651503-S	ILMN_67331	LOC366751	XM_345738.2	XM_345738.2		366751	62651503	XM_345738.2	LOC366751	XP_345739.2	ILMN_1372679	0003360142	S	105	ACCACAATCTGTGTCTGGTGTGAGGTGCAGCTGGTGGAGTCTGTTGAAGG					PREDICTED: Rattus norvegicus similar to immunglobulin heavy chain (LOC366751), mRNA.					
Rattus norvegicus	RefSeq	GI_62654096-S	ILMN_63045	SLC9A9_PREDICTED	XM_217223.3	XM_217223.3		300908	62654096	XM_217223.3	Slc9a9_predicted	XP_217223.2	ILMN_1350959	0006510056	S	598	GGATAGTGGACAGGAGAGGGGAAGAAGCCAAGGAGGAACCAGGTCCAACC					PREDICTED: Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (predicted) (Slc9a9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664592-S	ILMN_66365	AFG3L2	XM_225866.4	XM_225866.4		307350	109506689	XM_225866.4	Afg3l2	XP_225866.4	ILMN_1360110	0001580301	S	2449	TGTGGAAGGCACTGGCAGCTTAGATGAGGACACTTCTCTTCCTGAAGGCC	18	-	63931227-63931276	18q12.1	PREDICTED: Rattus norvegicus AFG3(ATPase family gene 3)-like 2 (yeast) (Afg3l2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]; The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure [goid 21675] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48747] [evidence ISS]; A reflex process in which an animal immediately tries to turn over after being placed in a supine position [goid 60013] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21326454-S	ILMN_59586	PRPF19	NM_139333.3	NM_139333.3		246216	78369668	NM_139333.3	Prpf19	NP_647549.2	ILMN_1354864	0006860647	S	1702	GGCCCTATGCCTTGTCACAGTTCTGGGCCTCATCTCAGTAGTGGGTTAGA	1	+	213401528-213401528:213401529-213401577	1q43	Rattus norvegicus PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (Prpf19), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [evidence IEA]	Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence ISS]; The proliferation of cells in the inner cell mass [goid 1833] [evidence ISS]; The proliferation of cells in the inner cell mass [goid 1833] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence ISS]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of astrocyte differentiation [goid 48711] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of astrocyte differentiation [goid 48711] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC124562; Prp19	MGC124562; Prp19
Rattus norvegicus	RefSeq	GI_12248182-S	ILMN_282784	TRIM17	NM_022798.1	NM_022798.1		64702	12248182	NM_022798.1	Trim17	NP_073635.1	ILMN_1371785	0001740075	S	1577	GACCATGTGGGTGAAGGGATAGAGGCTTGGAGAAGGGCACAGACACTGGG	10	+	45263093-45263142	10q22	Rattus norvegicus tripartite motif protein 17 (Trim17), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rnf16	Rnf16
Rattus norvegicus	RefSeq	GI_27685112-S	ILMN_57652	IFIT1_PREDICTED	XM_220058.2	XM_220058.2		294090	109460063	XM_220058.2	Ifit1_predicted	XP_220058.1	ILMN_2040190	0003710564	S	1296	TTTGCAGAAGCTGGCTGAAAGACGCATGCAGCAGAATGTTCATGTCCTGG	1	-	238580627-238580676	1q52	PREDICTED: Rattus norvegicus interferon-induced protein with tetratricopeptide repeats 1 (predicted) (Ifit1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658078-S	ILMN_70049	LOC501777	XM_577178.1	XM_577178.1		501777	62658078	XM_577178.1	LOC501777	XP_577178.1	ILMN_1360980	0002810358	S	10	TTTGCTACCCGATAAAACGTCAGCAAGCAGGGACACGGCCGACGCCCCAA				11q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC501777), mRNA.					
Rattus norvegicus	RefSeq	GI_62648666	ILMN_58030	RGD1559904_PREDICTED	XM_232783.4	XM_232783.4		313061	109474668	XM_232783.4	RGD1559904_predicted	XP_232783.4	ILMN_1650682	0005720286	S	5476	CGTCATGTACGGTCCTTTACTCGATAGACGTGCTCTTGGGAACACCCCAA	5	-	25688054-25688077:25688078-25688103	5q13	PREDICTED: Rattus norvegicus similar to mKIAA1429 protein (predicted) (RGD1559904_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642345-S	ILMN_59785	PKD2L1_PREDICTED	XM_219856.4	XM_219856.4		293937	109460157	XM_219856.4	Pkd2l1_predicted	XP_219856.4	ILMN_1360198	0003940600	S	2211	TGGGGATCACATACTGGATGAGGAGGATCAGGCACAGATGCGACAGGGGC	1	+	249082104-249082153	1q54	PREDICTED: Rattus norvegicus polycystic kidney disease 2-like 1 (predicted) (Pkd2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648776-S	ILMN_268464	RGD1560284_PREDICTED	XM_001064553.1	XM_001064553.1		500432	109476307	XM_001064553.1	RGD1560284_predicted	XP_001064553.1	ILMN_1354566	0000050332	S	866	ATTGGGCGGCAGTGAAATCCTTCTGGGGGGCAAAAGCCTCAACAACTGAG				5q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930540L03 (predicted) (RGD1560284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718596-S	ILMN_48010	LOC367591	XM_346221.2	XM_346221.2		367591	62718596	XM_346221.2	LOC367591	XP_346222.2	ILMN_1371851	0000610603	S	1304	CAATGGCCTGACATCCACAGGAGATTTTGGTATGACGGCTGCTGCAGGAC					PREDICTED: Rattus norvegicus hypothetical LOC367591 (LOC367591), mRNA.					
Rattus norvegicus	RefSeq	GI_62659950	ILMN_57150	LOC501878	XM_577297.1	XM_577297.1		501878	62659950	XM_577297.1	LOC501878	XP_577297.1	ILMN_1650210	0006110593	S	333	GCCCCTGCTGGTTCTCAGTGCCGGAGTCATCGGGCTGTTTTTCAATGTTC					PREDICTED: Rattus norvegicus similar to solute carrier family 30 (zinc transporter), member 10 isoform a (LOC501878), mRNA.					
Rattus norvegicus	RefSeq	GI_62651186-S	ILMN_263310	ISG12(B)	XM_001068101.1	XM_001068101.1		299269	109479854	XM_001068101.1	isg12(b)	XP_001068101.1	ILMN_1354070	0000130487	S	37	CTACCAGGACAGCTCATCATGTGGGGAGAAATGTTGGGCGCTGCTATAGG				6q32	PREDICTED: Rattus norvegicus putative ISG12(b) protein (isg12(b)), mRNA.					
Rattus norvegicus	RefSeq	GI_47578058-S	ILMN_277998	OLR101	NM_001000744.1	NM_001000744.1		405009	47578058	NM_001000744.1	Olr101	NP_001000744.1	ILMN_1351713	0003840368	S	320	TGTTTTGCGCCTTTGAGTCAGCCATCCTGGTGGCCATGGCCTTTGATCGC	1	+	161176201-161176250	1q32	Rattus norvegicus olfactory receptor 101 (Olr101), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr101	Olr101
Rattus norvegicus	RefSeq	GI_62645161-S	ILMN_67483	LOC311093	XM_229993.3	XM_229993.3		311093	62645161	XM_229993.3	LOC311093	XP_229993.3	ILMN_1354068	0002970184	S	2730	GTTAAGAGTTAGGACAATCCTCTGGCGAGGGTCTGGCGAGGGTCTGGCTC				3q21	PREDICTED: Rattus norvegicus similar to TGF-beta induced apotosis protein 2 (predicted) (LOC311093), mRNA.					
Rattus norvegicus	RefSeq	GI_62655236-S	ILMN_51457	LOC501165	XM_576590.1	XM_576590.1		501165	62655236	XM_576590.1	LOC501165	XP_576590.1	ILMN_1360102	0000770204	S	410	GCCTGTCTCCCAGATCCTGGAAAGCACTTGGGGTCCTGGTCAGAAAAGGC					PREDICTED: Rattus norvegicus similar to Dnajb10 protein (LOC501165), mRNA.					
Rattus norvegicus	RefSeq	GI_19924056-S	ILMN_288470	MUCDHL	NM_138525.1	NM_138525.1		171554	19924056	NM_138525.1	Mucdhl	NP_612534.1	ILMN_1355457	0002680706	S	2445	TACAAGGCTGTGTGGTTCGGCAAGGACATCGGGGCAGAGGCTGATGTGGT	1	-	201462620-201462669	1q41	Rattus norvegicus mucin and cadherin like (Mucdhl), mRNA.	An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IDA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]		MGC114263	MGC114263
Rattus norvegicus	RefSeq	GI_62078936-S	ILMN_302047	RGD1309930	NM_001014102.1	NM_001014102.1		316426	62078936	NM_001014102.1	RGD1309930	NP_001014124.1	ILMN_1361905	0001850026	S	2013	CCCTGCCCAAGGTGCTGACCCAATTCGCTGCCAAAAGAGAGTCAATCAGA				9q31	Rattus norvegicus similar to 2810022L02Rik protein (RGD1309930), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62647923	ILMN_66866	LOC502868	XM_578369.1	XM_578369.1		502868	62647923	XM_578369.1	LOC502868	XP_578369.1	ILMN_1650910	0005080070	S	497	CCCGCACTGAGATGTTGGTGGTGAGAGAAGAGCCTGAGAGACCCGGAGAT					PREDICTED: Rattus norvegicus similar to Ac2-210 (LOC502868), mRNA.					
Rattus norvegicus	RefSeq	GI_62664084-S	ILMN_277458	DSC2	NM_001033688.1	NM_001033688.1		291760	76096313	NM_001033688.1	Dsc2	NP_001028860.1	ILMN_1370399	0003870161	S	2471	AGTCTATTCCGCAAATGGCTTCACAGCTCAAACTGCGGGAGCTTCTGGGC	18	-	11904708-11904757	18p12	Rattus norvegicus desmocollin 2 (Dsc2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC124744	MGC124744
Rattus norvegicus	RefSeq	GI_62655142-S	ILMN_68387	RGD1560005_PREDICTED	XM_576579.2	XM_576579.2		501153	109486187	XM_576579.2	RGD1560005_predicted	XP_576579.2	ILMN_1360268	0003290059	S	6884	CCTCAGAAGCTTGAGTTCCACACCAAATACAGACAGGATGGTGACGCGGC	9	+	61985580-61985629	9q31	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560005_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.22499	ILMN_160761	RN.22499	Rn.22499		Rn.22499		82519805	DV726482			ILMN_1530538	0003610494	S	49	AAAGTTGGATTTACATCACTAATCTGAGACAGAATTTCACAGCTAATTAT					RVL18822 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_50356004-S	ILMN_281720	TBKBP1	NM_172021.2	NM_172021.2		266764	50356004	NM_172021.2	Tbkbp1	NP_742018.2	ILMN_1372958	0006350286	S	3146	TGAGGGGTACGTCAGCAGGGAAGGGGCCAAGGACTCCAGAGACTTGTCAT	10	-	85856021-85856070	10q31	Rattus norvegicus TBK1 binding protein 1 (Tbkbp1), mRNA.		Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]		Prosapip2	Prosapip2
Rattus norvegicus	RefSeq	GI_51854226-S	ILMN_299629	GSN	NM_001004080.1	NM_001004080.1		296654	51854226	NM_001004080.1	Gsn	NP_001004080.1	ILMN_1350086	0000130373	S	2262	CTCCTTCCTTTGTGGGCTGGTTCCTCGGCTGGGATGATGACTACTGGTCG	3	+	14386058-14386084:14386085-14386107	3p11	Rattus norvegicus gelsolin (Gsn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence IDA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence IEP]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Assembly of actin filaments by the addition of actin monomers to a filament [goid 30041] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IMP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IDA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IMP]; The process by which an actin filament is broken down into smaller filaments [goid 51014] [evidence IMP]; The process by which an actin filament is broken down into smaller filaments [goid 51014] [evidence ISS]; The process by which an actin filament is broken down into smaller filaments [goid 51014] [evidence ISS]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus [goid 51593] [evidence IEP]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95032	MGC95032
Rattus norvegicus	RefSeq	GI_21070945-S	ILMN_285315	SGP158	NM_139184.1	NM_139184.1		245985	21070945	NM_139184.1	Sgp158	NP_631923.1	ILMN_1368058	0001190059	S	300	TGACCATGGCAACCAGACACAGCCTCGTCCTCCTCACCCTGACCAAGGCA	4	+	169612982-169613031	4q42	Rattus norvegicus proline-rich glycoprotein (sgp158) (Sgp158), mRNA.					
Rattus norvegicus	RefSeq	GI_34858291-S	ILMN_285315	SGP158	NM_139184.1	NM_139184.1		245985	21070945	NM_139184.1	Sgp158	NP_631923.1	ILMN_1367319	0005900433	S	310	AACCAGACACAGCCTCGTCCTCCTCACCCTGACCAAGGCAACCAGACTCA	4	+	169612992-169613041	4q42	Rattus norvegicus proline-rich glycoprotein (sgp158) (Sgp158), mRNA.					
Rattus norvegicus	RefSeq	GI_62643074-S	ILMN_52863	LOC502509	XM_577992.1	XM_577992.1		502509	62643074	XM_577992.1	LOC502509	XP_577992.1	ILMN_1365859	0002100095	S	579	AGAAATGTTGACCGCAGCTGTCCTCGATCACCTGGGAGACACGTCTGGCT					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG20094 (LOC502509), mRNA.					
Rattus norvegicus	RefSeq	GI_62653506-S	ILMN_283634	VSIG2_PREDICTED	XM_001058168.1	XM_001058168.1		300520	109484501	XM_001058168.1	Vsig2_predicted	XP_001058168.1	ILMN_1357089	0005420138	S	915	AAGGAGCCCAAGGAGACATATGGGGGTAGTGACCTTCGGGAGGATGCCAC				8q21	PREDICTED: Rattus norvegicus V-set and immunoglobulin domain containing 2 (predicted) (Vsig2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557151-S	ILMN_295292	LRRC23	NM_001013165.1	NM_001013165.1		312707	61557151	NM_001013165.1	Lrrc23	NP_001013183.1	ILMN_1371720	0006180538	S	1360	CCGAGGCTCAGGTTCTGTGGTGGTCATCTCTGTGTGGCTTGTTCTGTGGG	4	-	160899493-160899542	4q42	Rattus norvegicus leucine rich repeat containing 23 (Lrrc23), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Lrpb7	Lrpb7
Rattus norvegicus	RefSeq	GI_62666254-S	ILMN_65280	LOC365585	XM_345112.2	XM_345112.2		365585	62666254	XM_345112.2	LOC365585	XP_345113.2	ILMN_1366626	0002190450	S	1095	GGGGAGGAGTTTGGCCAGAGGACAGGCTTGCCCGAGGACACCATCCACAT					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC365585), mRNA.					
Rattus norvegicus	RefSeq	GI_6981411-S	ILMN_289991	PROC	NM_012803.1	NM_012803.1		25268	6981411	NM_012803.1	Proc	NP_036935.1	ILMN_1365968	0007100575	S	1305	GGTGAGCTGGGGTGAGGGCTGTGGGCACCTCAACAACTATGGCGTCTACA	18	-	24563550-24563599	18p12	Rattus norvegicus protein C (Proc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation [goid 30195] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of coagulation [goid 50819] [evidence TAS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663291-S	ILMN_57159	LOC498710	XM_579857.1	XM_579857.1		498710	62663291	XM_579857.1	LOC498710	XP_579857.1	ILMN_1359945	0002060091	S	370	ACGTCCGGGATGGTTTGGATTGAGGGGAAGTCAAATGCGGGACCTGAAGG					PREDICTED: Rattus norvegicus LOC498710 (LOC498710), mRNA.					
Rattus norvegicus	RefSeq	GI_16758843-S	ILMN_283395	CCR3	NM_053958.1	NM_053958.1		117027	16758843	NM_053958.1	Ccr3	NP_446410.1	ILMN_1357098	0001770100	S	1219	TCCTGGCGAGAAACTGGAAAGAACAAGCTCTGTCTCCCCATCAACTGGGG	8	+	128769241-128769290	8q32	Rattus norvegicus chemokine (C-C motif) receptor 3 (Ccr3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with chemokines, small chemoattractant molecules normally used to stimulate leukocytes, to initiate a change in cell activity [goid 4950] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]	Cmkbr3	Cmkbr3
Rattus norvegicus	RefSeq	GI_62639242-S	ILMN_288212	IXL_PREDICTED	XM_001078289.1	XM_001078289.1		292751	109461579	XM_001078289.1	Ixl_predicted	XP_001078289.1	ILMN_1364638	0006370687	S	555	GCTGGACTGTGCCAACAAGGTCACTGGCAAGACTACTGCACCCTCGACTG				1q21	PREDICTED: Rattus norvegicus intersex-like (Drosophila) (predicted) (Ixl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638967-S	ILMN_53110	LOC502282	XM_577744.1	XM_577744.1		502282	62638967	XM_577744.1	LOC502282	XP_577744.1	ILMN_1367959	0005270131	S	1020	GCCTTTAGTGTGCGTTCAAGCTTGACTACCCATCAGGCAATCCATTCTGG					PREDICTED: Rattus norvegicus similar to IKEN cDNA 6720480D16 (LOC502282), mRNA.					
Rattus norvegicus	RefSeq	GI_62664100-S	ILMN_269779	RNF125_PREDICTED	XM_001054760.1	XM_001054760.1		361296	109506998	XM_001054760.1	Rnf125_predicted	XP_001054760.1	ILMN_1354552	0006510010	S	2271	CCAAGTCTTCAGGAGGTGAACACAGGTCAGGAGTGTAAGACCAGCCACAG				18p12	PREDICTED: Rattus norvegicus ring finger protein 125 (predicted) (Rnf125_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652198-S	ILMN_57221	LOC299821	XM_216900.3	XM_216900.3		299821	62652198	XM_216900.3	LOC299821	XP_216900.3	ILMN_1353187	0006550609	S	1530	CGCTTGTCTGCTATGCTCATATTTGGACTCTGCCGCCCGTGCCCAGGAAT					PREDICTED: Rattus norvegicus similar to Inner nuclear membrane protein Man1 (LEM domain containing protein 3) (LOC299821), mRNA.					
Rattus norvegicus	RefSeq	GI_62660695-S	ILMN_50126	RGD1306371_PREDICTED	XM_234083.4	XM_234083.4		314061	109499947	XM_234083.4	RGD1306371_predicted	XP_234083.4	ILMN_1372361	0002320736	S	2109	CTTCGAGAACGTGCCAACACTGCCCGAGCCCGCCTTGAGAAGAAGGTCTT	14	+	83198478-83198527	14q21	PREDICTED: Rattus norvegicus similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282) (predicted) (RGD1306371_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665765-S	ILMN_278150	DNMT3L	NM_001003964.1	NM_001003964.1		309680	51556268	NM_001003964.1	Dnmt3l	NP_001003964.1	ILMN_2039366	0001660600	A	1587	CAACGCTCTGGACAAGATCCCGATGGGGTAACCGGCCATGCTTCTTCCGA	20	-	10959009-10959058	20p12	Rattus norvegicus DNA (cytosine-5-)-methyltransferase 3-like (Dnmt3l), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence ISS]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665765-A	ILMN_278150	DNMT3L	NM_001003964.1	NM_001003964.1		309680	51556268	NM_001003964.1	Dnmt3l	NP_001003964.1	ILMN_1376468	0005570097	S	1186	GCAGAGTCCTCCAGAATGCTATGAGGGTGTGGAGCAACATTCCAGGGCTG	20	-	10962626-10962675	20p12	Rattus norvegicus DNA (cytosine-5-)-methyltransferase 3-like (Dnmt3l), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence ISS]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653977-S	ILMN_56955	LOC300760	XM_236308.3	XM_236308.3		300760	62653977	XM_236308.3	LOC300760	XP_236308.3	ILMN_1364915	0002970458	S	254	CCAGGAGGCAGCGATTGGTGTTTTGCAGCAGGCAAGTGAGGCCTATCTGG					PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (LOC300760), mRNA.					
Rattus norvegicus	RefSeq	GI_62638829-S	ILMN_68786	RGD1562905_PREDICTED	XM_214799.4	XM_214799.4		292539	109457919	XM_214799.4	RGD1562905_predicted	XP_214799.3	ILMN_1349205	0000060576	S	211	CCTCCGGAGGTATAATGGTGGAGTCGATAGGTGCGCCCAGGCCAAACAGT	1	+	64205595-64205644	1q12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (predicted) (RGD1562905_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666109-S	ILMN_301690	RGD1560135_PREDICTED	XM_574775.1	XM_574775.1		499452	62666109	XM_574775.1	RGD1560135_predicted	XP_574775.1	ILMN_1360790	0002350035	S	200	AAAGAAGTCGCACTGGAGAGCGCAGGATCCTAGTACAAGCCTTTGAGAGG	20	+	38261463-38261482:38261627-38261656	20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1560135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641584-S	ILMN_70358	ODF3_PREDICTED	XM_344975.3	XM_344975.3		365387	109459579	XM_344975.3	Odf3_predicted	XP_344976.3	ILMN_1361886	0003710315	S	759	CCAGGGGATAAGACCATGAAGCCAGGACCAGGAGCCCACAGCCCTGAAAA	1	+	201007866-201007915	1q41	PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 3 (predicted) (Odf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57528681-S	ILMN_285246	TST	NM_012808.1	NM_012808.1		25274	57528681	NM_012808.1	Tst	NP_036940.1	ILMN_2040131	0002650397	S	700	GAAGAGCCCAGAGGAGCTGCGTGCCATATTCCAGGACAAGAAGGTGGACC	7	-	116349923-116349972	7q34	Rattus norvegicus thiosulfate sulfurtransferase, mitochondrial (Tst), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]; The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster [goid 16226] [evidence NAS]	Catalysis of the reaction: thiosulfate + cyanide = SO3(2-) (sulfite) + thiocyanate [goid 4792] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RHODAN	RHODAN
Rattus norvegicus	RefSeq	GI_62652200	ILMN_57307	LOC500839	XM_580126.1	XM_580126.1		500839	62652200	XM_580126.1	LOC500839	XP_580126.1	ILMN_1649998	0004570176	S	721	CTCACCACCAGGGGTCACTTACTAGATGTGTGCTTGCCTGGCTTCTCCCC					PREDICTED: Rattus norvegicus LOC500839 (LOC500839), mRNA.					
Rattus norvegicus	RefSeq	GI_62666042-S	ILMN_266692	SART2_PREDICTED	XM_001053297.1	XM_001053297.1		365583	109510052	XM_001053297.1	Sart2_predicted	XP_001053297.1	ILMN_1356076	0001850100	S	3467	AGCTTTGGCTGACCCCTCGTGCTTCTTTCTGGGAATGTTTGGCTTGACTG				20q11	PREDICTED: Rattus norvegicus squamous cell carcinoma antigen recognized by T cells 2 (predicted) (Sart2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667395	ILMN_59939	RGD1563880_PREDICTED	XM_579033.2	XM_579033.2		503478	109511182	XM_579033.2	RGD1563880_predicted	XP_579033.2	ILMN_1650641	0001400102	S	256	AGGAGGAGAGATGCAGATGCACCGCGGAAGCCCCCATCCTCGTTCCTGCT	X	+	133911038-133911087	Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1563880_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667410-S	ILMN_59939	RGD1563880_PREDICTED	XM_579033.2	XM_579033.2		503478	109511182	XM_579033.2	RGD1563880_predicted	XP_579033.2	ILMN_1361769	0004670575	S	327	GGAGATAAAAGAACAACACCCAAACTGGACTGTGGCGCAGGTGGCCAAGG	X	+	133911109-133911158	Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1563880_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881792-S	ILMN_59939	RGD1563880_PREDICTED	XM_579033.2	XM_579033.2		503478	109511182	XM_579033.2	RGD1563880_predicted	XP_579033.2	ILMN_1362619	0000730301	S	338	AACAACACCCAAACTGGACTGTGGCGCAGGTGGCCAAGGCTGCAGGGAGG	X	+	133911120-133911169	Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1563880_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981649-S	ILMN_293963	TGFB3	NM_013174.1	NM_013174.1		25717	6981649	NM_013174.1	Tgfb3	NP_037306.1	ILMN_1352414	0006100017	S	2396	ATCCCACACAGCCTGGGGCATCAGACATCGTTTCCCTCCTACCCTAGACC	6	-	110173612-110173661	6q31	Rattus norvegicus transforming growth factor, beta 3 (Tgfb3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS];  [goid 7184] [evidence IDA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence IDA]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence TAS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; The formation of bone involved in the continuous turnover of bone matrix and mineral [goid 43932] [evidence ISS]; Any process that modulates the frequency, rate or extent of endothelial cell differentiation [goid 45601] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of neurocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The neurocranium is the portion of the vertebrate skull surrounding the brain [goid 48702] [evidence IDA]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone [goid 51491] [evidence ISS]	Interacting selectively with a type II transforming growth factor beta receptor [goid 5114] [evidence ISS]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence TAS]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]	MGC105479	MGC105479
Rattus norvegicus	RefSeq	GI_62664556-S	ILMN_278878	RGD1561821_PREDICTED	XR_008327.1	XR_008327.1		291542	109507491	XR_008327.1	RGD1561821_predicted		ILMN_1356500	0006590253	S	747	AGGAAGCTCACTGGCATGGTTTTCTGTATTCCTGCCCCCACTGTAGCCAC				18q12.1	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1561821_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254751-S	ILMN_284596	PGK1	NM_053291.2	NM_053291.2		24644	40254751	NM_053291.2	Pgk1	NP_445743.2	ILMN_1369074	0004210091	S	1410	GTTAGTGCAGCTAGTGGCCAAGACGCAGCACCAGGAACCCTAAGCAGCTG	X	+	94339867-94339916	Xq31	Rattus norvegicus phosphoglycerate kinase 1 (Pgk1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide [goid 16310] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate [goid 4618] [evidence ISS]; Catalysis of the reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate [goid 4618] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Pgk; MGC105265	Pgk; MGC105265
Rattus norvegicus	RefSeq	GI_6981549-S	ILMN_57646	SLC4A1	NM_012651.2	NM_012651.2		24779	76443686	NM_012651.2	Slc4a1	NP_036783.2	ILMN_2040760	0003890639	S	2912	GTGTCTGGATGGTGATGATGCCAAAGTGACCTTTGACGAGGCGGAAGGGC	10	-	91456344-91456390:91457255-91457257	10q32.1	Rattus norvegicus solute carrier family 4 (anion exchanger), member 1 (Slc4a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence ISS]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; The directed movement of bicarbonate into, out of, within or between cells [goid 15701] [evidence TAS]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IPI]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]	MGC93554	MGC93554
Rattus norvegicus	RefSeq	GI_62658717-S	ILMN_65085	LOC304592	XM_222288.3	XM_222288.3		304592	62658717	XM_222288.3	LOC304592	XP_222288.2	ILMN_1372082	0006980181	S	728	TGCAGCTGGATGGGCACGAGAGAAGCCTACAGGTGGTGTGAGGGACGGAG				12q12	PREDICTED: Rattus norvegicus similar to chromosome 7 open reading frame 19; CAP-binding protein complex interacting protein 2 (predicted) (LOC304592), mRNA.					
Rattus norvegicus	RefSeq	GI_62664703-S	ILMN_56699	LOC291407	XM_225692.3	XM_225692.3		291407	62664703	XM_225692.3	LOC291407	XP_225692.3	ILMN_1365305	0006110438	S	604	GGAACTGTGCAGCAGCCAGACGATCTGCAAAGTGGTTTTGAAAATGAGGC				18q12.3	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (LOC291407), mRNA.					
Rattus norvegicus	RefSeq	GI_62644052-S	ILMN_56839	LOC497762	XM_579738.1	XM_579738.1		497762	62644052	XM_579738.1	LOC497762	XP_579738.1	ILMN_1370677	0005390551	S	1191	CCCACAGCAGGTTGCACAGCCCCTGACTTGCCTTCTGAACCAGTAACTAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_207586 (LOC497762), mRNA.					
Rattus norvegicus	RefSeq	GI_62662521-S	ILMN_270553	LOC684106	XM_001068955.1	XM_001068955.1		684106	109503939	XM_001068955.1	LOC684106	XP_001068955.1	ILMN_1360290	0007100364	S	141	GAAAGGCTTGCCCGTCTACAACAAGAGCAACTTCAGCAGATTCCACGCGG					PREDICTED: Rattus norvegicus similar to CG31855-PA (LOC684106), mRNA.					
Rattus norvegicus	RefSeq	GI_47575922-S	ILMN_281684	OLR1474	NM_001000943.1	NM_001000943.1		405285	47575922	NM_001000943.1	Olr1474	NP_001000943.1	ILMN_1370727	0004570300	S	686	CTTCTACTAGGGTAATCCACAAGGTTTTCTCCACCTGTGGCTCCCACTTA	10	-	60421668-60421717	10q24	Rattus norvegicus olfactory receptor 1474 (Olr1474), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1474	Olr1474
Rattus norvegicus	RefSeq	GI_62660465	ILMN_49376	RECC1	XM_214035.4	XM_214035.4		89809	109499685	XM_214035.4	Recc1	XP_214035.4	ILMN_1650028	0000630450	S	3201	GCAGCCTTCACAAGAGCCTATAATAAGGAGGCCCACCTGACCCCATACTC	14	+	45738699-45738748	14p11	PREDICTED: Rattus norvegicus replication factor C 1 (Recc1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase [goid 5663] [evidence IEA]		Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex [goid 3689] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666804-S	ILMN_278889	RGD1565643_PREDICTED	XM_001071364.1	XM_001071364.1		367786	109511739	XM_001071364.1	RGD1565643_predicted	XP_001071364.1	ILMN_1360535	0004570309	S	2896	GGGAGCTCTCAGCATCCTGCTCTGTCTGCCATGTCTGCAAGTAGCCTTTG				Xq21	PREDICTED: Rattus norvegicus similar to protein tyrosine kinase Bmx (predicted) (RGD1565643_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667088-S	ILMN_273227	RGD1564806_PREDICTED	XM_001053733.1	XM_001053733.1		317237	109512117	XM_001053733.1	RGD1564806_predicted	XP_001053733.1	ILMN_1372496	0006520047	S	747	GCGGTGAGGCAATGGAACAAGGTTTGCGAGATTGCTGTCGATCCATACGG				Xq31	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1564806_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659747	ILMN_270317	WDR42A	NM_001014231.1	NM_001014231.1		364050	62079196	NM_001014231.1	Wdr42a	NP_001014253.1	ILMN_1650574	0000730632	S	1086	CTAGAACCAGACTCTCCCTGCACGTTCCTGTCGGCTGGTGAAGATGCCGT	13	+	88177752-88177801	13q24	Rattus norvegicus WD repeat domain 42A (Wdr42a), mRNA.					
Rattus norvegicus	RefSeq	Rn.7282	ILMN_270317	WDR42A	NM_001014231.1	NM_001014231.1		364050	62079196	NM_001014231.1	Wdr42a	NP_001014253.1	ILMN_1530374	0004670736	S	2856	GTCAGAAGTTTAAATACCTATATATTCTCTATGAACACAATGCAATAAAG				13q24	Rattus norvegicus WD repeat domain 42A (Wdr42a), mRNA.					
Rattus norvegicus	RefSeq	GI_19705540-S	ILMN_277019	ZG16	NM_134409.1	NM_134409.1		171449	19705540	NM_134409.1	Zg16	NP_599236.1	ILMN_1366988	0006370193	S	502	GCATAGATGCTATCAGCCTGCACTGGGATACCTACCCTAGCCACTGCAAC	1	-	186300887-186300936	1q36	Rattus norvegicus zymogen granule protein 16 (Zg16), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence IDA]		Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Zg-16p; Zg16p	Zg-16p; Zg16p
Rattus norvegicus	RefSeq	GI_62646751-S	ILMN_56750	LOC502726	XM_578225.1	XM_578225.1		502726	62646751	XM_578225.1	LOC502726	XP_578225.1	ILMN_1349698	0005220500	S	914	GCAAGTCGTCCTGTACCCAGTATTCAGCTCTTTGCCTGGTGGTATCCGCA				4q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300007B12 (LOC502726), mRNA.					
Rattus norvegicus	RefSeq	GI_34328541-S	ILMN_283795	MYADM	NM_183332.1	NM_183332.1		369016	34328541	NM_183332.1	Myadm	NP_899161.1	ILMN_1358691	0002900446	S	2472	CCAGGTGCTGAGATTACAGATGTGCCACAGTACCCCAGTTGTGCAGCCCC	1	-	64177876-64177925	1q12	Rattus norvegicus myeloid-associated differentiation marker (Myadm), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62659713-S	ILMN_275709	LOC690312	XM_001074055.1	XM_001074055.1		690312	109480817	XM_001074055.1	LOC690312	XP_001074055.1	ILMN_1374238	0000780563	S	187	CATCTGGTCATGGAACTGAGGAACTTGTCTGCCCACCGGAAGCCTGCCAC	7	-	98961544-98961593	7q33	PREDICTED: Rattus norvegicus similar to Fc receptor-like and mucin-like 1 (LOC690312), mRNA.					
Rattus norvegicus	RefSeq	GI_62658362-S	ILMN_67347	RGD1563333_PREDICTED	XM_577206.2	XM_577206.2		501797	109494984	XM_577206.2	RGD1563333_predicted	XP_577206.2	ILMN_1349550	0002640390	S	444	TCTGAACAAGGAAGGCGAGTGGTACTGGCTGGATGGGTCACCTCTGTCAG	12	+	2315436-2315485	12p12	PREDICTED: Rattus norvegicus similar to SIGNR4 (predicted) (RGD1563333_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873628-S	ILMN_275280	RGD1563703_PREDICTED	XM_001068301.1	XM_001068301.1		361206	109505450	XM_001068301.1	RGD1563703_predicted	XP_001068301.1	ILMN_1374729	0001740044	S	916	GTGAATGCTGTACGCGGCTTTCCCATGAGTGCGGCCATGTTCCTCGGGTA				17p14	PREDICTED: Rattus norvegicus similar to hypothetical protein E230025K15 (predicted) (RGD1563703_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654298-S	ILMN_272833	RGD1560844_PREDICTED	XR_008870.1	XR_008870.1		367162	109485332	XR_008870.1	RGD1560844_predicted		ILMN_1368682	0006450020	S	119	CTCTTAAGGGGGTTGACCCAAGTTCCAAGAAGCACAACAAGAAAGGCCTG				8q32	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1560844_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19745197-S	ILMN_275451	RNF38	NM_134467.1	NM_134467.1		171501	19745197	NM_134467.1	Rnf38	NP_604462.1	ILMN_1365393	0002650341	S	1506	GCACCGGGATTCAGAGTGACCAGCCTAAGAGCACAGATTTAGTTTGGGTG	5	-	60601057-60601088:60601089-60601106	5q22	Rattus norvegicus ring finger protein 38 (Rnf38), mRNA.		The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93195; Oip1	MGC93195; Oip1
Rattus norvegicus	RefSeq	GI_62078882-S	ILMN_299058	RGD1311648	NM_001014075.1	NM_001014075.1		313949	62078882	NM_001014075.1	RGD1311648	NP_001014097.1	ILMN_1358877	0006400408	S	2255	GCCAGGATTCTTGCTCTGAGTGCCCCGCTTATAGAACAGGCTTGATCAGT	6	+	31845157-31845206	6q14	Rattus norvegicus similar to hypothetical protein FLJ21820 (RGD1311648), mRNA.			Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8659556-S	ILMN_293839	KCNH3	NM_017108.1	NM_017108.1		27150	8659556	NM_017108.1	Kcnh3	NP_058804.1	ILMN_1349532	0003060735	S	3602	CTGAGGACGAGGAGGGGTTCTGCCATTCCTTGCATGTGCCCATCTCCACT	7	+	138002440-138002489	7q36	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 3 (Kcnh3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Elk2; Bec1	Elk2; Bec1
Rattus norvegicus	RefSeq	GI_62655831-S	ILMN_291892	NTHL1_PREDICTED	XM_001058112.1	XM_001058112.1		29541	109490323	XM_001058112.1	Nthl1_predicted	XP_001058112.1	ILMN_1360860	0002760484	S	793	TGACCAAGTCCCCAGAGGAGACACGTAGGAACCTGGAAGAGTGGCTACCC				10q12	PREDICTED: Rattus norvegicus nth (endonuclease III)-like 1 (E.coli) (predicted) (Nthl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659868-S	ILMN_52733	NVL_PREDICTED	XM_213963.4	XM_213963.4		289323	109498280	XM_213963.4	Nvl_predicted	XP_213963.4	ILMN_1348882	0002350497	S	2257	GCCGGCTGGACAAAACACTCTTTGTGGGTTTGCCACCCCCAGCAGACCGT	13	-	96871494-96871543	13q26	PREDICTED: Rattus norvegicus nuclear VCP-like (predicted) (Nvl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642879-S	ILMN_65579	RGD1564672_PREDICTED	XM_574844.2	XM_574844.2		499520	109464344	XM_574844.2	RGD1564672_predicted	XP_574844.1	ILMN_1354126	0004010170	S	444	GCCGGGCAGCTACTTCCCCTACAAGCACAGCTACATGTGGAGCCTCAGCA	2	-	35865285-35865287:35870302-35870348	2q13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC52498 (predicted) (RGD1564672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018541-S	ILMN_296389	IFT81	NM_199120.1	NM_199120.1		373066	40018541	NM_199120.1	Ift81	NP_954551.1	ILMN_1355679	0006900167	S	2499	CGTTTGTCTGAAGTCAGCAGTCCCTGTGGTTTCACTTCAGCTTCTCTCTC	12	+	35211694-35211743	12q16	Rattus norvegicus intraflagellar transport 81 homolog (Chlamydomonas) (Ift81), mRNA.		The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		Cdv-1	Cdv-1
Rattus norvegicus	RefSeq	GI_62718806-S	ILMN_63914	LOC501482	XM_576889.1	XM_576889.1		501482	62718806	XM_576889.1	LOC501482	XP_576889.1	ILMN_1356326	0003840142	S	988	ATCTGGGACCTGGTGGAGTTAGTGGCACTCGGGAGTGGGAATGGGAGAAA					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501482), mRNA.					
Rattus norvegicus	RefSeq	GI_62644805-S	ILMN_49763	SLC2A6_PREDICTED	XM_238321.4	XM_238321.4		296600	109467939	XM_238321.4	Slc2a6_predicted	XP_238321.4	ILMN_1366777	0005670528	S	1535	CTCGCTGGAGCAGATCGAGGCCTTCTTCCACACTCGCAGGATGTCCTTCA	3	-	5918523-5918572	3p12	PREDICTED: Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 6 (predicted) (Slc2a6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638525-S	ILMN_53981	TAGAP_PREDICTED	XM_217791.4	XM_217791.4		308097	109457739	XM_217791.4	Tagap_predicted	XP_217791.4	ILMN_1371433	0002340110	S	2482	GTTGGGAGTATGAGAGCAAGAATGTTGAAGCAGAGCATGGCGGTGCCCCC	1	-	41384594-41384643	1q11	PREDICTED: Rattus norvegicus T-cell activation GTPase activating protein (predicted) (Tagap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653927-S	ILMN_287158	GSTA4	XM_001059683.1	XM_001059683.1		300850	109485022	XM_001059683.1	Gsta4	XP_001059683.1	ILMN_1352039	0006900685	S	374	GCCCCTCAGGAAAAAGAAGAGAGCCTAGCTTTAGCAGTGAAGAGGGCTAA				8q31	PREDICTED: Rattus norvegicus glutathione S-transferase, alpha 4 (Gsta4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IDA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_9507174-S	ILMN_291167	TAC2	NM_019162.1	NM_019162.1		29191	9507174	NM_019162.1	Tac2	NP_062035.1	ILMN_1369660	0005720458	S	378	GGGACTTATGGGCAAGAGGAACAGCCAACCAGACACTCCCGCTGATGTGG	7	+	67720906-67720937:67721263-67721280	7q22	Rattus norvegicus tachykinin 2 (Tac2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor [goid 7217] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62658177-A	ILMN_288565	LAMP3	NM_001012015.1	NM_001012015.1		303801	58865599	NM_001012015.1	Lamp3	NP_001012015.1	ILMN_1376250	0001450082	S	1263	GGGTCTGGGCATCTACAAAATCCGCCAAAGGCGTCAGTCATCTGCATACC	11	+	83475986-83476035	11q23	Rattus norvegicus lysosomal-associated membrane protein 3 (Lamp3), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62717836-S	ILMN_50980	LOC367390	XM_346121.3	XM_346121.3		367390	109512891	XM_346121.3	LOC367390	XP_346122.3	ILMN_1354084	0004280494	S	114	CTGGGGAAGGTGTAAGGCTGGGAGAGAAACATCACCCCCTGAAACTGCCA	Un|NW_047844.1	-	294915-294951:295984-295996		PREDICTED: Rattus norvegicus hypothetical LOC367390 (LOC367390), mRNA.					
Rattus norvegicus	RefSeq	GI_62659905-S	ILMN_299612	RGD1565176_PREDICTED	XR_008245.1	XR_008245.1		289349	109499220	XR_008245.1	RGD1565176_predicted		ILMN_1366765	0002120079	S	846	GGCATCGTGGAAGGGCTCAATCCATGCTGTCACTACCACTCAGAAGAGTG				13q26	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1565176_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50979281-S	ILMN_263865	APOLD1	NM_001003403.1	NM_001003403.1		444983	50979281	NM_001003403.1	Apold1	NP_001003403.1	ILMN_1364576	0001740112	S	2785	TGGCTGTGGTGTGTCTGAGGAAATGTAAGTTTGGCATGAGGGGGAGGGGC	4	+	171907586-171907635	4q43	Rattus norvegicus apolipoprotein L domain containing 1 (Apold1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The change in morphology and behavior of an endothelial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42118] [evidence IEP]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]; Any process that modulates the frequency, rate or extent of endothelial cell differentiation [goid 45601] [evidence IEP]	Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665966-S	ILMN_271178	RGD1561371_PREDICTED	XM_001056397.1	XM_001056397.1		361844	109510104	XM_001056397.1	RGD1561371_predicted	XP_001056397.1	ILMN_1374609	0003830441	S	1038	CCAAGTGACCCTCAAGGCCATCTCGGCCCACTTCGACGACTCGAGCTCAT				20q11	PREDICTED: Rattus norvegicus similar to macroH2A2 (predicted), transcript variant 4 (RGD1561371_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865849-A	ILMN_272323	RAB34	NM_001012140.1	NM_001012140.1		360571	58865849	NM_001012140.1	Rab34	NP_001012140.1	ILMN_1376241	0003850022	S	1112	CCTGCCCCCAGGCACCATGCCAAAGACTGGATGACCCTTTATTCCTCTGG	10	-	64443255-64443304	10q25	Rattus norvegicus RAB34, member RAS oncogene family (Rab34), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence ISS]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651399-S	ILMN_61884	LOC299469	XM_234749.2	XM_234749.2		299469	62651399	XM_234749.2	LOC299469	XP_234749.2	ILMN_1374624	0000110035	S	603	CCGGAAAGTGGAGGTACAGACTACAATGGGAAGTTCAGGGGCAAGGTCAC				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain precursor V region (IdB5.7) - mouse  (fragment) (LOC299469), mRNA.					
Rattus norvegicus	RefSeq	GI_62647728-S	ILMN_272960	RGD1304825_PREDICTED	XM_001074564.1	XM_001074564.1		297415	109473851	XM_001074564.1	RGD1304825_predicted	XP_001074564.1	ILMN_1372953	0006100441	S	403	CTAGACAGCTGTGTGGCCAAGTGTGTGGATGACCACATGCACCTCATCCC				4q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010309E21 (predicted) (RGD1304825_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644382-S	ILMN_271222	RGD1560708_PREDICTED	XM_001076989.1	XM_001076989.1		362040	109467641	XM_001076989.1	RGD1560708_predicted	XP_001076989.1	ILMN_1361040	0006940358	S	903	CGGCGTGTGGGCTACTCTGCCACTTCAGATGCACATGGGGGACTTGTTTC				2q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310008M10 (predicted) (RGD1560708_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655402-S	ILMN_266642	HDAC4_PREDICTED	XM_001067733.1	XM_001067733.1		363287	109487524	XM_001067733.1	Hdac4_predicted	XP_001067733.1	ILMN_1364573	0007100403	S	4065	TTTCTATGGCTCTGGCCTGCCTTGTGAACCTTAGTGGGGTGCTGTGGGGG				9q36	PREDICTED: Rattus norvegicus histone deacetylase 4 (predicted) (Hdac4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21489978-S	ILMN_49323	ARFGAP1	NM_145090.2	NM_145090.2		246310	77404388	NM_145090.2	Arfgap1	NP_659558.1	ILMN_1370142	0002650300	S	1733	CTCTGAGCAGCCTTCCTGGATTCTGGGTTCTTGGGACCCAGGCACTGTCT	3	+	170100605-170100654	3q43	Rattus norvegicus ADP-ribosylation factor GTPase activating protein 1 (Arfgap1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IDA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]; The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat [goid 48205] [evidence ISS]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Arf GAP1; Arf1gap	Arf GAP1; Arf1gap
Rattus norvegicus	RefSeq	GI_62660982-S	ILMN_69530	LOC360998	XM_341273.2	XM_341273.2		360998	62660982	XM_341273.2	LOC360998	XP_341274.2	ILMN_1350082	0002370176	S	527	CGTGTTCCTGGGCGAGTTTTCCTTCCACAGGGAGAAGCCCTGCCAGGTCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC360998), mRNA.					
Rattus norvegicus	RefSeq	GI_62654713-S	ILMN_48637	POLH_PREDICTED	XM_236934.4	XM_236934.4		316235	109485802	XM_236934.4	Polh_predicted	XP_236934.4	ILMN_1369597	0002480398	S	1788	CAACTCGCAGGAGATGACCCAAAGGGCAGCTGAGGACCAAGTGCTGTGTG	9	+	10374902-10374951	9q12	PREDICTED: Rattus norvegicus polymerase (DNA directed), eta (RAD 30 related) (predicted) (Polh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654500-S	ILMN_60172	EIF1B_PREDICTED	XM_217294.4	XM_217294.4		301068	109484100	XM_217294.4	Eif1b_predicted	XP_217294.1	ILMN_1349946	0002690053	S	686	AGGCTCCTAAGTCACAAGGAAATCGCCGTGAGGTGGGGACGAAGCCCGAG	8	+	125501791-125501840	8q32	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 1B (predicted) (Eif1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661914-S	ILMN_68153	LOC364376	XM_344399.2	XM_344399.2		364376	62661914	XM_344399.2	LOC364376	XP_344400.2	ILMN_1369613	0006450035	S	548	CAAAAGCGGCAAACACTTCTCATTGCACATCACAGCCTCCCAGCCTGAGG					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain (LOC364376), mRNA.					
Rattus norvegicus	RefSeq	GI_62663764-S	ILMN_67357	LOC498787	XM_574072.1	XM_574072.1		498787	62663764	XM_574072.1	LOC498787	XP_574072.1	ILMN_1368435	0001850278	S	1192	TTGTGGGACCGCCATAGAACATCATCTCTCAGCTCCATGGGGGAGCCTGC				17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (LOC498787), mRNA.					
Rattus norvegicus	RefSeq	GI_62653644-S	ILMN_294821	DLAT	NM_031025.1	NM_031025.1		81654	78365254	NM_031025.1	Dlat	NP_112287.1	ILMN_1364536	0002850121	S	2163	CCTTCCTGGGAGTATAGAATGGGCAGGATTGTGGCTTCCTGCAGACAGAC	8	-	53989880-53989929	8q23	Rattus norvegicus dihydrolipoamide S-acetyltransferase (Dlat), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence TAS]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence IDA]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence IEA]	The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate [goid 6086] [evidence IDA]; The chemical reactions and pathways involving pyruvate, 2-oxopropanoate [goid 6090] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving pyruvate, 2-oxopropanoate [goid 6090] [evidence IEA]; The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence TAS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide [goid 4742] [evidence TAS]; Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide [goid 4742] [evidence IDA]; Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide [goid 4742] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with lipoic acid, 1,2-dithiolane-3-pentanoic acid [goid 31405] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide [goid 4742] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645334-S	ILMN_53738	DUSP19_PREDICTED	XM_230039.4	XM_230039.4		311151	109468362	XM_230039.4	Dusp19_predicted	XP_230039.1	ILMN_1369598	0004120139	S	725	TACCGAGTAGGCAAAGAGAGCAATGGAGGTGACCAAGTGCCCGCAGTGGC	3	+	63485612-63485661	3q24	PREDICTED: Rattus norvegicus dual specificity phosphatase 19 (predicted) (Dusp19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657447-S	ILMN_64738	RGD1310868_PREDICTED	XM_221141.4	XM_221141.4		303702	109489434	XM_221141.4	RGD1310868_predicted	XP_221141.2	ILMN_1368424	0006200070	S	2379	CATCCTCCTGTAATGCTCTCCGTGGGATGTGGTTCTCAAGGAAGAAGGAG	10	+	108489831-108489880	10q32.3	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D230014K01 (predicted) (RGD1310868_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11024642-S	ILMN_287017	NT5E	NM_021576.1	NM_021576.1		58813	11024642	NM_021576.1	Nt5e	NP_067587.1	ILMN_1356523	0002850347	S	2924	TGGGTTAGTCCAGGGAATGCAAAAGGCAGTCAGGGACAGTGGAGAAAGGG	8	+	93635229-93635278	8q31	Rattus norvegicus 5' nucleotidase, ecto (Nt5e), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9166] [evidence IEA]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9166] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ferrous iron, Fe(II) [goid 8198] [evidence IDA]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence IMP]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence IDA]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence IEA]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence EXP]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence IDA]; Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate [goid 8253] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nt5; MGC112615	Nt5; MGC112615
Rattus norvegicus	RefSeq	GI_62660707-S	ILMN_299227	PIK3IP1	NM_001017453.1	NM_001017453.1		305472	62945261	NM_001017453.1	Pik3ip1	NP_001017453.1	ILMN_1358762	0002190494	S	1900	AGGGTTTTCCAGAGAGGGAAAAGCAGCTTCTGAGTGTCCTGCCGAGAGCG	14	+	83967502-83967551	14q21	Rattus norvegicus phosphoinositide-3-kinase interacting protein 1 (Pik3ip1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			zgc:66482	zgc:66482
Rattus norvegicus	RefSeq	GI_34882984-S	ILMN_283860	LOC691361	XR_007077.1	XR_007077.1		691361	109513037	XR_007077.1	LOC691361		ILMN_1366548	0003170176	S	206	ATGATGGAATTGACTGTGTCTATGGCCTGGCATTTCACAGCGATGAGAGG	Un|NW_047858.1	-	474287-474336		PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC691361), mRNA.					
Rattus norvegicus	RefSeq	GI_62638946-S	ILMN_290481	CABP5_PREDICTED	XM_344863.2	XM_344863.2		365194	62638946	XM_344863.2	Cabp5_predicted	XP_344864.2	ILMN_1361082	0002340446	S	456	CAAGGAGTTTGATGCCAATGGAGATGGGGAGATCACACTGGCAGAGCTGC	1	+	73993087-73993093:73994670-73994712	1q21	PREDICTED: Rattus norvegicus calcium binding protein 5 (predicted) (Cabp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646903-S	ILMN_272776	ING3	NM_001034107.1	NM_001034107.1		312154	77627739	NM_001034107.1	Ing3	NP_001029279.1	ILMN_1353072	0002970154	S	945	GCCGCCGACTCTCGCAGTGGCAGGAAGAGCAAAAATAACACCAAGTCTTC	4	+	48275227-48275258:48276580-48276597	4q22	Rattus norvegicus inhibitor of growth family, member 3 (Ing3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC112729	MGC112729
Rattus norvegicus	RefSeq	GI_62664146-S	ILMN_65889	ZNF397_PREDICTED	XM_344656.3	XM_344656.3		364827	109506372	XM_344656.3	Znf397_predicted	XP_344657.3	ILMN_1364824	0003840168	S	522	GGAGCCCCAGGTTTTCCATGAGAGAGACAAGGCGACCCTACCATTTAGGG	18	-	15739463-15739512	18p12	PREDICTED: Rattus norvegicus zinc finger protein 397 (predicted) (Znf397_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648558-S	ILMN_279762	RGD1307986_PREDICTED	XM_001060925.1	XM_001060925.1		312924	109475973	XM_001060925.1	RGD1307986_predicted	XP_001060925.1	ILMN_1372032	0005390273	S	1142	GCCACCTCAGAACCTACTGAGGGAAAAGATAATGAAGCTGCCACTCCCGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5330414D10 (predicted) (RGD1307986_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665028-S	ILMN_290945	RGD1306072_PREDICTED	XM_001072092.1	XM_001072092.1		304654	109508643	XM_001072092.1	RGD1306072_predicted	XP_001072092.1	ILMN_1371001	0006650609	S	1871	TGCCTTACCTGACTAAGGGGTTAGGGAGCCTTGCTAGAGGGGATCAGGGC				19q11	PREDICTED: Rattus norvegicus hypothetical LOC304654 (predicted) (RGD1306072_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577738-S	ILMN_278486	OLR1259	NM_001000455.1	NM_001000455.1		300581	47577738	NM_001000455.1	Olr1259	NP_001000455.1	ILMN_1352373	0003610091	S	695	AGAGCATGTCAAAAGCCTTCAGCACCTGCAGTTCCCACATAATTGCTGTC	8	+	40920678-40920727	8q22	Rattus norvegicus olfactory receptor 1259 (Olr1259), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1259; ratchr8-40928750-40929697_ORF	Olr1259; ratchr8-40928750-40929697_ORF
Rattus norvegicus	RefSeq	GI_62078832-S	ILMN_273278	FAM110A	NM_001014050.1	NM_001014050.1		311535	62078832	NM_001014050.1	Fam110a	NP_001014072.1	ILMN_1364614	0004570072	S	1403	GGCCAAGACTTAGACCTAGACCAGCATCCTCTGGCAAGCAAGGACTGACC	3	-	142326071-142326120	3q41	Rattus norvegicus family with sequence similarity 110, member A (Fam110a), mRNA.					
Rattus norvegicus	RefSeq	GI_62654232-S	ILMN_69516	RGD1565004_PREDICTED	XM_576463.2	XM_576463.2		501048	109483923	XM_576463.2	RGD1565004_predicted	XP_576463.2	ILMN_1373319	0006420541	S	1339	TGCCCGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCATAGTGAC	8	+	111472354-111472403	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510040D07 (predicted) (RGD1565004_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666390-S	ILMN_283201	CDC40_PREDICTED	XM_001063953.1	XM_001063953.1		361859	109510236	XM_001063953.1	Cdc40_predicted	XP_001063953.1	ILMN_1370477	0000510398	S	99	CGCGGACTCTCTCATGCACTTGACCAAATCGCCTTCAGCCAAGCCCTCTC				20q12	PREDICTED: Rattus norvegicus cell division cycle 40 homolog (yeast) (predicted) (Cdc40_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742754-S	ILMN_266649	CTNNA1	NM_001007145.1	NM_001007145.1		307505	55742754	NM_001007145.1	Ctnna1	NP_001007146.1	ILMN_1367123	0003710044	S	3402	TCATCGTCGGGCTCTCGTAATAATCGCAGTGTTTCCTGCTTTGGGCTGGC	18	+	27769143-27769192	18p11	Rattus norvegicus catenin (cadherin associated protein), alpha 1 (Ctnna1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence IEA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; Cell-cell adherens junction which forms a continuous belt near the apex of epithelial cells [goid 5915] [evidence IEA]; Cell-cell adherens junction which forms a continuous belt near the apex of epithelial cells [goid 5915] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns [goid 7163] [evidence IEA]; Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns [goid 7163] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Assembly of gap junctions, which are found in most animal tissues, and serve as direct connections between the cytoplasms of adjacent cells. They provide open channels through the plasma membrane, allowing ions and small molecules (less than approximately a thousand daltons) to diffuse freely between neighboring cells, but preventing the passage of proteins and nucleic acids [goid 16264] [evidence IMP]; The regrowth of axons following their loss or damage [goid 31103] [evidence IEP]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents [goid 43297] [evidence IEA]; The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents [goid 43297] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence IEA]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence ISS]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]	MGC93767; Ctnna1	MGC93767; Ctnna1
Rattus norvegicus	RefSeq	GI_12408293-S	ILMN_277303	ATP1A4	NM_022848.1	NM_022848.1		29132	12408293	NM_022848.1	Atp1a4	NP_074039.1	ILMN_1361312	0002060451	S	3291	ACTTTGGATGAGGCGAGTTCTGGGGCTGGAGCAAGAGCATCTGGTAGGAG				13q24	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 4 polypeptide (Atp1a4), mRNA.	Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IDA]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence ISS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage [goid 15077] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	MGC93426	MGC93426
Rattus norvegicus	RefSeq	GI_62656936-S	ILMN_288237	PPP1R1B	NM_138521.1	NM_138521.1		360616	61889053	NM_138521.1	Ppp1r1b	NP_612530.1	ILMN_2039038	0000270400	S	1212	CCTGCCAGTCATTCTTCTATTTACCCGGTGGGAGGGGGGAGGTGCAAGCA	10	+	87131054-87131103	10q31	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 1B (Ppp1r1b), mRNA.		The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; Any process that stops, prevents or reduces the receptiveness of a female to male advances [goid 7621] [evidence ISS]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]	Darpp32; Darpp-32	Darpp32; Darpp-32
Rattus norvegicus	RefSeq	GI_34873517-S	ILMN_288237	PPP1R1B	NM_138521.1	NM_138521.1		360616	61889053	NM_138521.1	Ppp1r1b	NP_612530.1	ILMN_2040370	0005960411	S	1495	CATTCTGGATGTCGTCCCTTATTGTCCTGTTCCTGCTGGGTGCCTGCAAG	10	+	87131337-87131386	10q31	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 1B (Ppp1r1b), mRNA.		The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; Any process that stops, prevents or reduces the receptiveness of a female to male advances [goid 7621] [evidence ISS]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]	Darpp32; Darpp-32	Darpp32; Darpp-32
Rattus norvegicus	RefSeq	GI_62718050-S	ILMN_62938	LOC363328	XM_343667.2	XM_343667.2		363328	62718050	XM_343667.2	LOC363328	XP_343668.2	ILMN_1356658	0004480605	S	1520	GGGGGTGTACCAGCCCAGTCCTTGAGTGGCAGGAACCGGAAATTATGTAG					PREDICTED: Rattus norvegicus similar to AW046014 protein (LOC363328), mRNA.					
Rattus norvegicus	RefSeq	GI_34874700-S	ILMN_161846	LOC367214	XM_346013.1	XM_346013.1			34874700	XM_346013.1	LOC367214		ILMN_2039440	0000150113	S	294	GAGTTTAGAGGCCATGAAGATTGGATGCGGTCTGGATCGTCTGCAGTGGG					Rattus norvegicus similar to chromosome 6 open reading frame 130; hypothetical 9.7 kDa protein dJ34B21.3 (LOC367214), mRNA.					
Rattus norvegicus	RefSeq	GI_31377522-S	ILMN_297115	CCND1	NM_171992.2	NM_171992.2		58919	31377522	NM_171992.2	Ccnd1	NP_741989.2	ILMN_1350372	0005910450	S	3625	CACACAGTCTGCCCTGTGACATGAATGGCTTTGAGGGGCTCTGGCTGGTG	1	-	205357333-205357382	1q42	Rattus norvegicus cyclin D1 (Ccnd1), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence IEA]; Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state [goid 320] [evidence IEA]; The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state [goid 320] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus [goid 32026] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus [goid 33197] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis [goid 33327] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of CDK activity [goid 45737] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of CDK activity [goid 45737] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence TAS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence TAS]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Modulates the activity of a cyclin-dependent protein kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins [goid 16538] [evidence IEA]; Modulates the activity of a cyclin-dependent protein kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins [goid 16538] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_20376823-S	ILMN_266489	PROKR2	NM_138978.1	NM_138978.1		192649	20376823	NM_138978.1	Prokr2	NP_620434.1	ILMN_1363500	0007000504	S	1214	AAACCAGTGGGGTTCCTGCCACCGAAGAGGTGGACTGTATCAGGCTAAAG	3	-	120139420-120139469	3q36	Rattus norvegicus prokineticin receptor 2 (Prokr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IMP]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IEA]	Gpr73l1	Gpr73l1
Rattus norvegicus	RefSeq	GI_19924086-A	ILMN_273065	LOC191574	NM_138547.1	NM_138547.1		191574	19924086	NM_138547.1	LOC191574	NP_612556.1	ILMN_1376356	0003120725	S	1888	TTAGTTTTGAGGTAGGGCACCTGTGGCAGGAGTGACCAAGAGACCCAGGG	17	-	77316811-77316860	17q12.3	Rattus norvegicus 3-alpha-hydroxysteroid dehydrogenase (LOC191574), mRNA.					
Rattus norvegicus	RefSeq	GI_62656298-S	ILMN_58855	CHD3	XM_220602.4	XM_220602.4		303241	109488363	XM_220602.4	Chd3	XP_220602.4	ILMN_1369007	0002640048	S	6464	CTGTGCTGGTGTGAAGAGGTCTGGGTGGGAGATGGTTAGCAGGGTCTTCC	10	-	56136804-56136853	10q24	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 3 (Chd3), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]; Any complex that mediates dynamic changes in eukaryotic chromatin [goid 16585] [evidence ISS]	The formation or destruction of chromatin structures [goid 6333] [evidence ISS]; The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654958-S	ILMN_264468	RGD1560724_PREDICTED	XM_001058869.1	XM_001058869.1		501127	109487020	XM_001058869.1	RGD1560724_predicted	XP_001058869.1	ILMN_1351584	0005570364	S	111	CCAGTGGCTGGTTGACAATTTCTGCATCTGTGAAGGGTTCAGCGTGCCCC				9q21	PREDICTED: Rattus norvegicus similar to FLJ42986 protein (predicted) (RGD1560724_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654956-S	ILMN_264468	RGD1560724_PREDICTED	XM_001058869.1	XM_001058869.1		501127	109487020	XM_001058869.1	RGD1560724_predicted	XP_001058869.1	ILMN_1366613	0000450280	S	1655	TCCAGGTTCTGCTGGAGGACAAGGCTACTGAAAGCGCCGTGAAGCTCAGC				9q21	PREDICTED: Rattus norvegicus similar to FLJ42986 protein (predicted) (RGD1560724_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262172-S	ILMN_270528	TMED2	NM_031722.2	NM_031722.2		65165	54262172	NM_031722.2	Tmed2	NP_113910.1	ILMN_1373896	0006110204	S	1596	GCACTCTGCTTTGGGTGTGGGCGGTCCAGGATTATGTGGTGACTAATGTC	12	-	33165601-33165650	12q15	Rattus norvegicus transmembrane emp24 domain trafficking protein 2 (Tmed2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence IDA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence NAS]; The process by which vesicles are directed to specific destination membranes, mediated by microtubules that grow between molecules at the vesicle membrane and target membrane surfaces [goid 6903] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rnp24; MGC72390	Rnp24; MGC72390
Rattus norvegicus	RefSeq	GI_56090358-S	ILMN_301810	RGD1359378	NM_001007658.1	NM_001007658.1		300015	56090358	NM_001007658.1	RGD1359378	NP_001007659.1	ILMN_1367992	0002810551	S	1221	GTCTAGGCACCAAGCCTAAGGGGACACTCAGAAATGAGGGCAAGGAGCCC	7	+	112838157-112838206	7q34	Rattus norvegicus mesenchymal stem cell protein DSCD75 (RGD1359378), mRNA.				MGC94661	MGC94661
Rattus norvegicus	RefSeq	GI_56090456-S	ILMN_291888	ARMCX6	NM_001007757.1	NM_001007757.1		363496	56090456	NM_001007757.1	Armcx6	NP_001007758.1	ILMN_1348921	0001780136	S	1534	CCCCGTGGCCCCTAGCTGTGGAGAACTAGCCTCAAATCACAGCGTCTAGA	X	-	122209707-122209756	Xq34	Rattus norvegicus armadillo repeat containing, X-linked 6 (Armcx6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93796	MGC93796
Rattus norvegicus	RefSeq	GI_62663717-S	ILMN_64754	RGD1562435_PREDICTED	XM_574060.2	XM_574060.2		498774	109505110	XM_574060.2	RGD1562435_predicted	XP_574060.1	ILMN_1352523	0006400452	S	778	CTTGTAAAGATTCAGGATCACAGACACTCTGAAAGCCCAGAAGGGTGCTG	17	+	67687777-67687826	17q12.1	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (predicted) (RGD1562435_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27690395-S	ILMN_69696	ZBED4_PREDICTED	XM_235553.4	XM_235553.4		315211	109481161	XM_235553.4	Zbed4_predicted	XP_235553.3	ILMN_2039383	0002710736	S	3841	CAGTGCGATTTCTGGGCTGTCCGCCAAGTACAGTCCCCTCAGAAAAGCTG	7	+	127096025-127096074	7q34	PREDICTED: Rattus norvegicus zinc finger, BED domain containing 4 (predicted) (Zbed4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652900-S	ILMN_69696	ZBED4_PREDICTED	XM_235553.4	XM_235553.4		315211	109481161	XM_235553.4	Zbed4_predicted	XP_235553.3	ILMN_1363638	0005890435	S	4160	CTCCTCCTTCAGGCCAGGTGTCGAGGTGCGTTTTCAGAAGCCCACTAGAA	7	+	127096344-127096393	7q34	PREDICTED: Rattus norvegicus zinc finger, BED domain containing 4 (predicted) (Zbed4_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.3708	ILMN_69696	ZBED4_PREDICTED	XM_235553.4	XM_235553.4		315211	109481161	XM_235553.4	Zbed4_predicted	XP_235553.3	ILMN_1530305	0003360373	S	4839	ATACTTCTTATGAGATAGCTTTATTGTAGAGAGACGCAAAAACTAAATCA	7	+	127097023-127097072	7q34	PREDICTED: Rattus norvegicus zinc finger, BED domain containing 4 (predicted) (Zbed4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656476-S	ILMN_70133	PITPNM3_PREDICTED	XM_220629.4	XM_220629.4		287467	109488425	XM_220629.4	Pitpnm3_predicted	XP_220629.4	ILMN_1357220	0006290092	S	2473	GAGGCCAGCCACCGCTCTCGCCCTAAGAAGAACAACTCGCGCATGATCCT	10	-	58903978-58904027	10q24	PREDICTED: Rattus norvegicus PITPNM family member 3 (predicted) (Pitpnm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658325-S	ILMN_65084	ZFP358_PREDICTED	XM_341026.3	XM_341026.3		360754	109495001	XM_341026.3	Zfp358_predicted	XP_341027.3	ILMN_1349633	0001690500	S	1963	GGGCGCTGCGTCTGTGGTGATCTGGGGAAGGTGTGTGCTATGTTCACAGT	12	-	2658641-2658690	12p12	PREDICTED: Rattus norvegicus zinc finger protein 358 (predicted) (Zfp358_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718518-S	ILMN_65681	LOC292209	XM_238066.4	XM_238066.4		292209	109513718	XM_238066.4	LOC292209	XP_238066.4	ILMN_1371135	0002100270	S	482	AATTAAAAATTTCATACGTTGCTCTGCAGGAGGATGGTCCTACAGGACAG	Un|NW_047907.1	+	1957462-1957506:1958290-1958294		PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC292209), mRNA.					
Rattus norvegicus	RefSeq	GI_62649819-S	ILMN_268875	CNKSR1	NM_001039011.1	NM_001039011.1		298545	84781679	NM_001039011.1	Cnksr1	NP_001034100.1	ILMN_1357016	0005340180	S	2202	TCTGTGAGAGACCGGAAGGAGCATTAGCCCTCAGCTTACCTCCAAACCGG	5	-	152972775-152972824	5q36	Rattus norvegicus connector enhancer of kinase suppressor of Ras 1 (Cnksr1), mRNA.	The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]	A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence ISS]	MGC124829	MGC124829
Rattus norvegicus	RefSeq	GI_6981467-S	ILMN_273812	PRPH2	NM_013021.1	NM_013021.1		25534	6981467	NM_013021.1	Prph2	NP_037153.1	ILMN_1367692	0006420215	S	1246	TCCCAAGAAAGCTGGTCACCTACTGACTCTCCTTGACGTGGGCCTTGAAG				9q12	Rattus norvegicus peripherin 2 (Prph2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Prph2; RSRDS	Prph2; RSRDS
Rattus norvegicus	RefSeq	GI_62718135-S	ILMN_67402	LOC501297	XM_576710.2	XM_576710.2		501297	109513198	XM_576710.2	LOC501297	XP_576710.1	ILMN_1372055	0003850288	S	446	ATGTCTGCCTTTCTTTGTTCTGGACCGGAAGGTCTGCAGCTCTGGGCCCT	Un|NW_047872.1	-	119344-119393		PREDICTED: Rattus norvegicus hypothetical LOC501297 (LOC501297), mRNA.					
Rattus norvegicus	RefSeq	GI_62652279-S	ILMN_271882	NAB2	XM_001056620.1	XM_001056620.1		314910	109482089	XM_001056620.1	Nab2	XP_001056620.1	ILMN_1368836	0007100278	S	2287	TGGAACCGTTTGCTCTGAGACTGGGGGCTTGGGAAAACTGGGTCTCCCTC				7q22	PREDICTED: Rattus norvegicus Ngfi-A binding protein 2 (Nab2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14037] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of epidermis development [goid 45682] [evidence ISS]	Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56090561-S	ILMN_266861	GGPS1	NM_001007626.1	NM_001007626.1		291211	56090561	NM_001007626.1	Ggps1	NP_001007627.1	ILMN_1349919	0004610170	S	2778	CCAGAGGTCCTGGTTCAGTTTCCAGTAACCACAGCTCACACCTGTCTATA	17	+	59471055-59471104	17q12.1	Rattus norvegicus geranylgeranyl diphosphate synthase 1 (Ggps1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]	Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate [goid 4161] [evidence IEA]; Catalysis of the reaction: trans,trans-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate [goid 4311] [evidence ISS]; Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = diphosphate + trans,trans-farnesyl diphosphate [goid 4337] [evidence ISS]; Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = diphosphate + trans,trans-farnesyl diphosphate [goid 4337] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	rGGPS1a1; rGGPS1a2; rGGPS1a3; rGGPS1a	rGGPS1a1; rGGPS1a2; rGGPS1a3; rGGPS1a
Rattus norvegicus	RefSeq	GI_62645392-S	ILMN_293719	ARFGAP2	NM_001033707.1	NM_001033707.1		362162	76096353	NM_001033707.1	Arfgap2	NP_001028879.1	ILMN_1373855	0001690338	S	2525	AGCTGCAGGCTCCAAACACTGGCAGCTGGGCCATGCACTGTGTCATCCTT	3	+	75633107-75633156	3q24	Rattus norvegicus ADP-ribosylation factor GTPase activating protein 2 (Arfgap2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124884	MGC124884
Rattus norvegicus	RefSeq	GI_34858399-S	ILMN_296784	LOC297568	NM_001037975.1	NM_001037975.1		297568	83816938	NM_001037975.1	LOC297568	NP_001033064.1	ILMN_1374571	0000460452	S	4523	CTGTGGACAAGGCATTGCTGGAATCCCCAGACCAGGGAACCTTCAAGAAG	4	+	158243928-158243977	4q42	Rattus norvegicus alpha-1-inhibitor III (LOC297568), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 17114] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62647837-S	ILMN_275524	XPC_PREDICTED	XM_001073450.1	XM_001073450.1		312560	109473881	XM_001073450.1	Xpc_predicted	XP_001073450.1	ILMN_1358786	0004480053	S	2604	CTGCTCATCAGAGAAAGGCTGAAACTCCGCTACGGGGCCAAGAGTGAGGC				4q34	PREDICTED: Rattus norvegicus xeroderma pigmentosum, complementation group C (predicted) (Xpc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655461-S	ILMN_48121	LOC367316	XM_346076.2	XM_346076.2		367316	62655461	XM_346076.2	LOC367316	XP_346077.2	ILMN_1351897	0002260148	S	1088	TCCTGTGGCAGTGTGGGCAGTTGGAGGAAGTGACCAAGATGGGCGTGTCT				9q36	PREDICTED: Rattus norvegicus similar to aquaporin 12 (LOC367316), mRNA.					
Rattus norvegicus	RefSeq	GI_62644920-S	ILMN_270615	EXOSC2_PREDICTED	XM_345336.2	XM_345336.2		366017	62644920	XM_345336.2	Exosc2_predicted	XP_345337.2	ILMN_1349445	0003870471	S	1531	CCCAAGGGAGCTGTTACTTCTCTTCCTTCAGCATGTCCACTGGCAGGAGC	3	+	10797339-10797388	3p12	PREDICTED: Rattus norvegicus exosome component 2 (predicted) (Exosc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663218-S	ILMN_271776	NSD1_PREDICTED	XM_001066409.1	XM_001066409.1		306764	109505409	XM_001066409.1	Nsd1_predicted	XP_001066409.1	ILMN_1354380	0004730706	S	8181	TGCAGTGAATGTCACCACCCGACAAGCTGTCCCCAGGGTACCATTTGGGG				17p14	PREDICTED: Rattus norvegicus nuclear receptor binding SET domain protein 1 (predicted) (Nsd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948373-S	ILMN_278334	LRRC46	NM_001004201.1	NM_001004201.1		287653	51948373	NM_001004201.1	Lrrc46	NP_001004201.1	ILMN_1361074	0002940692	S	840	AGGACTTGGAGCAGGAACTGCATCAGCATCAGGAACGCAGGCAGCAGGCT	10	-	85757600-85757649	10q31	Rattus norvegicus leucine rich repeat containing 46 (Lrrc46), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94361	MGC94361
Rattus norvegicus	RefSeq	GI_62655556-S	ILMN_54919	LOC503275	XM_578810.1	XM_578810.1		503275	62655556	XM_578810.1	LOC503275	XP_578810.1	ILMN_1352549	0001340458	S	369	GGTCAGAAAACTGTGGGTTGTACTATTGGGCCACTTCCAGTGACTGCTGC					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG00568 (LOC503275), mRNA.					
Rattus norvegicus	RefSeq	GI_62665007-S	ILMN_288183	KLF1_PREDICTED	XM_001071193.1	XM_001071193.1		304666	109508609	XM_001071193.1	Klf1_predicted	XP_001071193.1	ILMN_1360513	0006350750	S	775	CGCCCCCTTCCTTTTTGAATTGTCTGGGACCTGGTGCGGTGGGCACAGAA				19q11	PREDICTED: Rattus norvegicus Kruppel-like factor 1 (erythroid) (predicted) (Klf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647144-S	ILMN_52704	LOC500104	XM_575455.1	XM_575455.1		500104	62647144	XM_575455.1	LOC500104	XP_575455.1	ILMN_1356886	0002940403	S	967	GGATCTTATGGCCTACATGGTCTCCAAGGAGTAAGAAGCCCTGGCCACCC					PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC500104), mRNA.					
Rattus norvegicus	RefSeq	GI_34871853	ILMN_48107	DNAJC8_PREDICTED	XM_232744.2	XM_232744.2		313035	34871853	XM_232744.2	Dnajc8_predicted	XP_232744.2	ILMN_1651001	0002680672	S	686	GGCAGAAAAACTTTGAGGTGAGTGTCTGAGGGGAGGAGCTGAGGTGGGCC				5q36	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 8 (predicted) (Dnajc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651939	ILMN_67248	RGD1559596_PREDICTED	XM_578642.2	XM_578642.2		503122	109480307	XM_578642.2	RGD1559596_predicted	XP_578642.2	ILMN_1650601	0006450053	S	1344	GAACATCCAGGCTAGATCGCCTCTGGCATTTATTCCCTTCTCGGCAGGAC	7	+	13281553-13281602	7q11	PREDICTED: Rattus norvegicus similar to Cyp4f15 protein (predicted) (RGD1559596_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527611-S	ILMN_63793	SLC17A5	NM_001009713.2	NM_001009713.2		363103	67972663	NM_001009713.2	Slc17a5	NP_001009713.1	ILMN_1366625	0002940451	S	1214	CTTTGGCTGTTGCATTCCTAACCATATCCACGACGCTGGGAGGCTTCGCC	8	-	83525327-83525376	8q31	Rattus norvegicus solute carrier family 17 (anion/sugar transporter), member 5 (Slc17a5), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of sialic acid into, out of, within or between cells [goid 15739] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of sialic acid from one side of the membrane to the other [goid 15136] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62643821	ILMN_66762	LOC361990	XM_342290.2	XM_342290.2		361990	62643821	XM_342290.2	LOC361990	XP_342291.2	ILMN_1650076	0000940301	S	1264	CCCTATTTTCCTTTAATTTGGTTGAGTTTGCTTTCTGTTTATTTTGGGGG				2q34	PREDICTED: Rattus norvegicus similar to DKFZP547E1010 protein (LOC361990), mRNA.					
Rattus norvegicus	RefSeq	GI_8393223-S	ILMN_274989	CYP11A1	NM_017286.1	NM_017286.1		29680	8393223	NM_017286.1	Cyp11a1	NP_058982.1	ILMN_1374891	0000050731	S	1689	CTCCAGAAACAGCACTCTGTGATTACCTGTCCACGTTAGCTGGGCCCTCC	8	+	61805373-61805422	8q24	Rattus norvegicus cytochrome P450, family 11, subfamily a, polypeptide 1 (Cyp11a1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Any of the inward folds of the mitochondrial inner membrane. Their number, extent, and shape differ in mitochondria from different tissues and organisms. They appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found. Their shape can vary with the respiratory state of the mitochondria [goid 30061] [evidence IDA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IMP]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IMP]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence ISS]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence ISS]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence IMP]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; The process whereby a relatively unspecialized cell acquires the specialized features of a granulosa cell, a supporting cell for the developing female gamete in the ovary of mammals [goid 60014] [evidence IEP]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: cholesterol + reduced adrenal ferredoxin + O2 = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H2O [goid 8386] [evidence TAS]; Catalysis of the reaction: cholesterol + reduced adrenal ferredoxin + O2 = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H2O [goid 8386] [evidence ISS]; Catalysis of the reaction: cholesterol + reduced adrenal ferredoxin + O2 = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H2O [goid 8386] [evidence IMP]; Catalysis of the reaction: cholesterol + reduced adrenal ferredoxin + O2 = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H2O [goid 8386] [evidence ISS]; Catalysis of the reaction: cholesterol + reduced adrenal ferredoxin + O2 = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H2O [goid 8386] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence IMP]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	Cyp11a; Cypxia1; P450scc	Cyp11a; Cypxia1; P450scc
Rattus norvegicus	RefSeq	GI_62664330-S	ILMN_61999	LOC498852	XM_579875.1	XM_579875.1		498852	62664330	XM_579875.1	LOC498852	XP_579875.1	ILMN_1361959	0001400372	S	960	GCTGCCTTTCCGGCCCTGATGAACTAGAGGTGTGATTCCATCTTTCTGGG					PREDICTED: Rattus norvegicus LOC498852 (LOC498852), mRNA.					
Rattus norvegicus	RefSeq	GI_62643258-S	ILMN_62044	LOC499585	XM_574910.1	XM_574910.1		499585	62643258	XM_574910.1	LOC499585	XP_574910.1	ILMN_1366588	0000430097	S	1324	GATAGATACACCCTTAGCCAGACTAACGAGAGGACACAGAGAGTATGTCC					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC499585), mRNA.					
Rattus norvegicus	RefSeq	GI_56090264-S	ILMN_266456	SARS	NM_001007606.1	NM_001007606.1		266975	56090264	NM_001007606.1	Sars	NP_001007607.1	ILMN_1351094	0000630154	S	1776	CCTCACTGATGACTGGTGAAGCCACGCAATAAAGCATCTCTGGGGAGGGC	2	-	203995570-203995619	2q34	Rattus norvegicus seryl-tRNA synthetase (Sars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6434] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser) [goid 4828] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC72629; Sars	MGC72629; Sars
Rattus norvegicus	RefSeq	GI_62653417-S	ILMN_52117	LOC503195	XM_578719.1	XM_578719.1		503195	62653417	XM_578719.1	LOC503195	XP_578719.1	ILMN_1357219	0004610494	S	591	GTCGGGGAAGCACAGGAAACACTTACCACAGACATCTCGGCAGCCATAAC					PREDICTED: Rattus norvegicus similar to voltage-dependent anion channel 1 (LOC503195), mRNA.					
Rattus norvegicus	RefSeq	GI_62652973-S	ILMN_50450	ALG12_PREDICTED	XM_235555.4	XM_235555.4		315212	109481117	XM_235555.4	Alg12_predicted	XP_235555.4	ILMN_1371307	0001570471	S	1224	CGATGACTGGAGGTATGACAAGAGGGAAGATGTGCAGCTGGGAGCAGCGG	7	-	127110022-127110060:127110165-127110175	7q34	PREDICTED: Rattus norvegicus asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (predicted) (Alg12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758201-S	ILMN_280597	RAB27B	NM_053459.1	NM_053459.1		84590	16758201	NM_053459.1	Rab27b	NP_445911.1	ILMN_1373113	0002900170	S	467	AGCGGTTCCGGAGTCTCACCACCGCCTTCTTCAGAGATGCCATGGGCTTC	18	-	66687545-66687591:66692264-66692266	18q12.1	Rattus norvegicus RAB27B, member RAS oncogene family (Rab27b), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence IDA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653124-S	ILMN_264609	AAAS_PREDICTED	XM_001067255.1	XM_001067255.1		300259	109482973	XM_001067255.1	Aaas_predicted	XP_001067255.1	ILMN_1368325	0003840487	S	1441	AACAGCCCCGTGTTTGAGCTGCTTCCCTGTGGTGTTATTCAGGGGGAGCC				7q36	PREDICTED: Rattus norvegicus achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A) (predicted) (Aaas_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663713-S	ILMN_64569	LOC307168	XM_225618.3	XM_225618.3		307168	62663713	XM_225618.3	LOC307168	XP_225618.3	ILMN_1356983	0004920152	S	1933	GTGTAACAGGATTCCTACCTGTGTCACAGCCTCCTCGAAGGAGGAGGGAC				17q12.1	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC307168), mRNA.					
Rattus norvegicus	RefSeq	GI_20301953-S	ILMN_270581	APOE	NM_138828.1	NM_138828.1		25728	20301953	NM_138828.1	Apoe	NP_620183.1	ILMN_1367529	0002640600	S	832	GTGGAAGACATGCAGCGCCAGTGGGCAAACCTAATGGAGAAGATACAGGC	1	-	79003801-79003850	1q21	Rattus norvegicus apolipoprotein E (Apoe), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Loosely bound to the surface of the plasma membrane that faces away from the cytoplasm, but not integrated into the hydrophobic region [goid 31232] [evidence IDA]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence IEA]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence ISS]; A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triacylglycerol and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver [goid 34362] [evidence IEA]; A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triacylglycerol and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver [goid 34362] [evidence ISS]; A triglyceride-rich lipoprotein particle that typically contains APOB100, APOE and APOCs and has a density of 1.006-1.019 g/ml and a diameter of between 25-30 nm. IDL particles are found in blood and are formed by the delipidation of very-low-density lipoprotein particles (VLDL). IDL particles are removed from blood by the liver, following binding to the APOE receptor, or are converted to low-density lipoprotein (LDL) [goid 34363] [evidence IEA]; A triglyceride-rich lipoprotein particle that typically contains APOB100, APOE and APOCs and has a density of 1.006-1.019 g/ml and a diameter of between 25-30 nm. IDL particles are found in blood and are formed by the delipidation of very-low-density lipoprotein particles (VLDL). IDL particles are removed from blood by the liver, following binding to the APOE receptor, or are converted to low-density lipoprotein (LDL) [goid 34363] [evidence ISS]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence IEA]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence ISS]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence IEA]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; The physiological process by which dietary excess is sensed by the central nervous system and results in a reduction in food intake and increased energy expenditure [goid 2021] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IDA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IDA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence IEA]; A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue [goid 10544] [evidence IEA]; Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue [goid 10544] [evidence ISS]; A series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response [goid 19934] [evidence IEA]; A series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response [goid 19934] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP [goid 30828] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP [goid 30828] [evidence ISS]; The regrowth of neuronal processes such as axons or dendrites following their loss or damage [goid 31102] [evidence TAS]; The regrowth of axons following their loss or damage [goid 31103] [evidence ISS]; A series of molecular signals within the cell that are mediated by the Cdc42 protein switching to a GTP-bound active state [goid 32488] [evidence IEA]; A series of molecular signals within the cell that are mediated by the Cdc42 protein switching to a GTP-bound active state [goid 32488] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32801] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors [goid 32805] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence IEA]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence IEA]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]; The process by which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded [goid 34382] [evidence IEA]; The process by which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded [goid 34382] [evidence ISS]; The process by which a very-low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded [goid 34447] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IDA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42159] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43537] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43537] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]; Any process that activates or increases the activity of the enzyme nitric-oxide synthase [goid 51000] [evidence IEA]; Any process that activates or increases the activity of the enzyme nitric-oxide synthase [goid 51000] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of membrane protein ectodomain peptidolysis [goid 51044] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of membrane protein ectodomain peptidolysis [goid 51044] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence IEA]; Any process by which a substance or cellular entity, such as a protein complex or organelle, is maintained in a specific location within, or in the membrane of, a cell, and is prevented from moving elsewhere [goid 51651] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of lipid within an organism or cell [goid 55088] [evidence ISS]	Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Interacting selectively with beta-amyloid peptide/protein and/or its precursor [goid 1540] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IDA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IDA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence ISS]; Interacting selectively with any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 8034] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage [goid 16209] [evidence IEA]; Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage [goid 16209] [evidence ISS]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence ISS]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; The formation of bonds from two or more atoms within the same ligand to a metal atom in complexes in which the metal is part of a ring [goid 46911] [evidence IEA]; The formation of bonds from two or more atoms within the same ligand to a metal atom in complexes in which the metal is part of a ring [goid 46911] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48156] [evidence IEA]; Interacting selectively with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48156] [evidence ISS]; Interacting selectively with an apolipoprotein E receptor [goid 50749] [evidence IEA]; Interacting selectively with an apolipoprotein E receptor [goid 50749] [evidence ISS]	APOEA	APOEA
Rattus norvegicus	RefSeq	GI_62649315-S	ILMN_274425	C8B_MAPPED	XM_001058539.1	XM_001058539.1		313421	109476829	XM_001058539.1	C8b_mapped	XP_001058539.1	ILMN_1368692	0001780242	S	1826	GCCAGGCTTTAGCACACCAGCTCCCACCCAGGGCTACCACAACAAAAAGC				5q34	PREDICTED: Rattus norvegicus complement component 8, beta polypeptide (mapped) (C8b_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62655582-S	ILMN_60173	ERCC4_PREDICTED	XM_340741.2	XM_340741.2		360465	62655582	XM_340741.2	Ercc4_predicted	XP_340742.2	ILMN_1357043	0004730593	S	370	CTTCAAGATTCCCCAGCTTTGTGGTAGCCCTGGTGATCGGAGATCGTCAT					PREDICTED: Rattus norvegicus excision repair cross-complementing rodent repair deficiency, complementation group 4 (predicted) (Ercc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861796-S	ILMN_273416	CABP4_PREDICTED	XM_001068353.1	XM_001068353.1		365394	109463330	XM_001068353.1	Cabp4_predicted	XP_001068353.1	ILMN_1355061	0004150519	S	627	CGCCTTCCGAGAGTTTGACAAGGACAGAGATGGACGGATCACAGTGGCGG				1q42	PREDICTED: Rattus norvegicus calcium binding protein 4 (predicted) (Cabp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575952-S	ILMN_262508	OLR1499	NM_001000031.1	NM_001000031.1		287502	47575952	NM_001000031.1	Olr1499	NP_001000031.1	ILMN_1369726	0000430390	S	804	GGAGATTGTCATGGCTATGATGTACACGGTGGTGACCCCAATGCTGAACC	10	-	61034230-61034279	10q24	Rattus norvegicus olfactory receptor 1499 (Olr1499), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-61048706-61047771_ORF; Olr1499	ratchr10-61048706-61047771_ORF; Olr1499
Rattus norvegicus	RefSeq	GI_62664942-S	ILMN_272569	ADCY7	XM_001063214.1	XM_001063214.1		84420	109508467	XM_001063214.1	Adcy7	XP_001063214.1	ILMN_1373467	0005360504	S	3108	CAATGTTGCCAGCCGCATGGAGAGCACCGGAGAGCTTGGGAAGATCCAGG				19p11	PREDICTED: Rattus norvegicus adenylate cyclase 7, transcript variant 2 (Adcy7), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence NAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue [goid 9190] [evidence IEA]	Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA];  [goid 16849] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605815-S	ILMN_274040	MGC105830	NM_001008370.1	NM_001008370.1		361706	56605815	NM_001008370.1	MGC105830	NP_001008371.1	ILMN_1350110	0000110133	S	1312	AGCCCCTTTGTCCCTGAGGAAAGCGGAGGCGGAAGGCCCACCTTGCCAAA	X	+	73109332-73109381	Xq22	Rattus norvegicus similar to Ras-related protein Rab-1B (MGC105830), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078906-S	ILMN_285736	CCDC67	NM_001014087.1	NM_001014087.1		315438	62078906	NM_001014087.1	Ccdc67	NP_001014109.1	ILMN_1360293	0002370546	S	2319	TGGGCACAGACGCAGGGGCTTCTAAGGTGAAAGGGCGATGCAGACACCTA	8	-	12362913-12362962	8q12	Rattus norvegicus coiled-coil domain containing 67 (Ccdc67), mRNA.				RGD1306632	RGD1306632
Rattus norvegicus	RefSeq	GI_62657475-S	ILMN_67169	FSCN2_PREDICTED	XM_221196.3	XM_221196.3		303741	109489467	XM_221196.3	Fscn2_predicted	XP_221196.3	ILMN_1352886	0001450164	S	1453	CCTATCAAATCAGAGGCCGTGGAGGTGGGTTCTGGTACACTGGGAGCCAT	10	+	109795265-109795279:109795363-109795397	10q32.3	PREDICTED: Rattus norvegicus fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) (predicted) (Fscn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660369-S	ILMN_282860	RGD1310726_PREDICTED	XM_001076228.1	XM_001076228.1		305288	109500536	XM_001076228.1	RGD1310726_predicted	XP_001076228.1	ILMN_1351799	0001580451	S	3300	GTCAAATGAGAAGTACGAACGAGAGCGAGCAATCCAAGAGCTGCGCCGAC				14p11	PREDICTED: Rattus norvegicus similar to KIAA0635 gene product (predicted) (RGD1310726_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638777	ILMN_271651	SLC8A2	NM_078619.1	NM_078619.1		140447	17530966	NM_078619.1	Slc8a2	NP_511174.1	ILMN_1650279	0001400609	S	2936	CTCAGAGGCACCCCCTTCAGCCCATCTTTGTGAGTTACACCTGAGCCCTC	1	+	76498621-76498626	1q21	Rattus norvegicus solute carrier family 8 (sodium/calcium exchanger), member 2 (Slc8a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Ncx2	Ncx2
Rattus norvegicus	RefSeq	Rn.1806	ILMN_66975	FZD7_PREDICTED	XM_237191.4	XM_237191.4		301440	109486131	XM_237191.4	Fzd7_predicted	XP_237191.4	ILMN_1530533	0001400441	S	5152	AGAGACAGTGCAGTATGTATATTTTGTAAATCTCCCATTTTTGTAAGAAA	9	+	58067914-58067963	9q31	PREDICTED: Rattus norvegicus frizzled homolog 7 (Drosophila) (predicted) (Fzd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655118-S	ILMN_66975	FZD7_PREDICTED	XM_237191.4	XM_237191.4		301440	109486131	XM_237191.4	Fzd7_predicted	XP_237191.4	ILMN_1353821	0003610601	S	3964	TCCCGGAGGAGAGGCCTAACTGTGAAGACAGTAGCTTTTACAGGCAGAGC	9	+	58066726-58066775	9q31	PREDICTED: Rattus norvegicus frizzled homolog 7 (Drosophila) (predicted) (Fzd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649069-S	ILMN_55648	LOC296507	XM_231000.2	XM_231000.2		296507	62649069	XM_231000.2	LOC296507	XP_231000.2	ILMN_1373827	0005900292	S	25	CAGCAGCAGGTGATGTAATGAAAGTGTCCCAACAGCCAGCACGAGCAGCT					PREDICTED: Rattus norvegicus similar to Plasmodium vivax PV1H14075_P-related (LOC296507), mRNA.					
Rattus norvegicus	RefSeq	GI_62643847-S	ILMN_68025	LOC499666	XM_580002.1	XM_580002.1		499666	62643847	XM_580002.1	LOC499666	XP_580002.1	ILMN_1348981	0002470056	S	365	GTGCAGCTGGGGAAGAAACACTCTCAAAAACAAGTCTACAACCTTCCCCC					PREDICTED: Rattus norvegicus LOC499666 (LOC499666), mRNA.					
Rattus norvegicus	RefSeq	GI_62640937-S	ILMN_282441	RGD1310926_PREDICTED	XM_001064964.1	XM_001064964.1		292325	109462460	XM_001064964.1	RGD1310926_predicted	XP_001064964.1	ILMN_1366144	0007050408	S	1114	TGTAGCCACAGACAGGATGCAGGGTCTCCCGAGGCCAGAGGGGAAATGAT				1q32	PREDICTED: Rattus norvegicus similar to beta-1,3-N-acetylglucosaminyltransferase protein (predicted) (RGD1310926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644083	ILMN_288202	LOC310721	NM_001014041.1	NM_001014041.1		310721	62078812	NM_001014041.1	LOC310721	NP_001014063.1	ILMN_1649807	0002680519	S	1092	TCCCCGACATCCTGGAGCAGCAGAGGAAGCTGGAGACCTACCTTCAGAAC	2	-	195463731-195463780	2q34	Rattus norvegicus similar to 4930431B09Rik protein (LOC310721), mRNA.					
Rattus norvegicus	RefSeq	GI_53850621-S	ILMN_288787	TSPAN3	NM_001005547.1	NM_001005547.1		300733	53850621	NM_001005547.1	Tspan3	NP_001005547.1	ILMN_1359191	0002320048	S	1228	AGGGAGGACGCCAGCTGTCTGGTGCCGCTCACCAGTGTCCTTTTAAAGAA	8	-	59740298-59740347	8q24	Rattus norvegicus tetraspanin 3 (Tspan3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Tm4sf8; MGC95296	Tm4sf8; MGC95296
Rattus norvegicus	RefSeq	GI_57528224-S	ILMN_266802	CIRH1A	NM_001009640.1	NM_001009640.1		291987	57528224	NM_001009640.1	Cirh1a	NP_001009640.1	ILMN_1349761	0005340110	S	1902	CGCTTCCTCCGAAAAACGAATCAGATGTCTTCCTGAGGCGCACGACCCAT	19	+	36769423-36769472	19q12	Rattus norvegicus cirrhosis, autosomal recessive 1A (human) (Cirh1a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC95114	MGC95114
Rattus norvegicus	RefSeq	GI_6981277-S	ILMN_267537	NPPA	NM_012612.1	NM_012612.1		24602	6981277	NM_012612.1	Nppa	NP_036744.1	ILMN_1373142	0005050170	S	450	AGCTGCTTCGGGGGTAGGATTGACAGGATTGGAGCCCAGAGCGGACTAGG	5	+	165075079-165075128	5q36	Rattus norvegicus natriuretic peptide precursor type A (Nppa), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IDA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence TAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]; Any process that modulates the frequency, rate or extent of increases in the diameter of blood vessels [goid 42312] [evidence TAS]; Any process that modulates the levels of body fluids [goid 50878] [evidence TAS]; Any process that modulates the size of blood vessels [goid 50880] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of water within a tissue, organ, or a multicellular organism [goid 50891] [evidence TAS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IDA]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IDA]	ANP; Pnd; ANF; RATANF	ANP; Pnd; ANF; RATANF
Rattus norvegicus	RefSeq	GI_62659542-S	ILMN_55784	LHX4_PREDICTED	XM_341135.3	XM_341135.3		360858	109498039	XM_341135.3	Lhx4_predicted	XP_341136.3	ILMN_1353227	0001500746	S	714	GCAGGAGAAGGAGAGCTCAGCAGAGGACTGTGGGGTTAGTGACAGTGAGC	13	-	70672746-70672795	13q21	PREDICTED: Rattus norvegicus LIM homeobox protein 4 (predicted) (Lhx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657091-S	ILMN_64989	RGD1560049_PREDICTED	XM_573199.2	XM_573199.2		498003	109489064	XM_573199.2	RGD1560049_predicted	XP_573199.1	ILMN_1353786	0006200309	S	1233	GCTGGTCCTCCCAGCCCGACACACCCTGCTTAGACAGACGCATGGCATAA	10	-	91034387-91034436	10q32.1	PREDICTED: Rattus norvegicus similar to Dual specificity protein phosphatase 3 (T-DSP11) (predicted) (RGD1560049_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758801-S	ILMN_297899	PEX12	NM_053921.1	NM_053921.1		116718	16758801	NM_053921.1	Pex12	NP_446373.1	ILMN_1355019	0001660121	S	1699	GAGATGGAGGCGGGAGTTTGAGTTCAAGGCCACCAAAGGGGGAGTGTCAA	10	-	71379416-71379465	10q26	Rattus norvegicus peroxisomal biogenesis factor 12 (Pex12), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IMP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence ISS]; The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported [goid 16558] [evidence IEA]	Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62079218-S	ILMN_290576	CYB5R2	NM_001014244.1	NM_001014244.1		365345	62079218	NM_001014244.1	Cyb5r2	NP_001014266.1	ILMN_1373498	0002060725	S	1228	GCTTCTAGGCTTGGAGGCTGGGAAGGAAGCCACTTTCTCCATGGCTTAGT	1	-	165131133-165131182	1q33	Rattus norvegicus cytochrome b5 reductase 2 (Cyb5r2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence ISS]; Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5) [goid 4128] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	RGD1308421	RGD1308421
Rattus norvegicus	RefSeq	GI_62653884-S	ILMN_52210	RGD1304623_PREDICTED	XM_236385.4	XM_236385.4		315795	109483606	XM_236385.4	RGD1304623_predicted	XP_236385.4	ILMN_1364376	0002900253	S	3931	TGAAGCCCCACTGAGCTATCCCTTTCCCAAAGACAGCACTATCACCAGCC	8	-	76091653-76091702	8q24	PREDICTED: Rattus norvegicus similar to KIAA1749 protein (predicted) (RGD1304623_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650863-S	ILMN_58307	LOC503025	XM_578545.1	XM_578545.1		503025	62650863	XM_578545.1	LOC503025	XP_578545.1	ILMN_1365059	0003390091	S	780	AGCTTTGACAAGCACCGTGACAGAAAGCAGCCGAACTGCGGCGGTCCGAC					PREDICTED: Rattus norvegicus similar to cDNA sequence BC023488 (LOC503025), mRNA.					
Rattus norvegicus	RefSeq	GI_34870199-S	ILMN_69614	LOC360758	XM_346913.1	XM_346913.1		360758	34870199	XM_346913.1	LOC360758	XP_346914.1	ILMN_1358217	0004730242	S	383	GGGAGAAGCAAATCCCAGCAGGACTAGGGGCAGGTTAGACCGGAGGTGCT					PREDICTED: Rattus norvegicus hypothetical LOC360758 (LOC360758), mRNA.					
Rattus norvegicus	RefSeq	GI_62639419-S	ILMN_54163	LOC361556	XM_341844.2	XM_341844.2		361556	62639419	XM_341844.2	LOC361556	XP_341845.2	ILMN_1366872	0002190538	S	73	TCATTAACCCAGGGGGGCGGTTCCAGGAGAGGACGAAGTCATGGGAGACT					PREDICTED: Rattus norvegicus similar to Ankrd27 protein (LOC361556), mRNA.					
Rattus norvegicus	RefSeq	GI_62664760-A	ILMN_281679	LOC291840	NM_001003705.1	NM_001003705.1		291840	51172595	NM_001003705.1	LOC291840	NP_001003705.1	ILMN_1376486	0001740091	S	1529	GGTCAGTTATGGAGTCCTTCTGGTCACCCTGGGAGCCTTCATCTTTGGCC	19	+	9680662-9680711	19p13	Rattus norvegicus amino acid transporter (LOC291840), mRNA.				MGC105833	MGC105833
Rattus norvegicus	RefSeq	GI_62666553	ILMN_59323	LANCL3_PREDICTED	XM_228739.4	XM_228739.4		302540	109510460	XM_228739.4	Lancl3_predicted	XP_228739.2	ILMN_1650452	0004540121	S	1288	ATCCGGTGTGGGGAGCTAACATGGCAGAAAGGCCTGTTGAAGAAGGGGCC	X	-	25648391-25648440	Xq13	PREDICTED: Rattus norvegicus LanC lantibiotic synthetase component C-like 3 (bacterial) (predicted) (Lancl3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718690-S	ILMN_54002	LOC363410	XM_343736.2	XM_343736.2		363410	62718690	XM_343736.2	LOC363410	XP_343737.2	ILMN_1370567	0000630093	S	320	GACCCTCAGAGGAACCAGTGATGGAGAGCTCACCCAAATCCTATGTCCCA					PREDICTED: Rattus norvegicus similar to Ras-related protein Rab-27B (LOC363410), mRNA.					
Rattus norvegicus	RefSeq	GI_6981315-S	ILMN_298049	OXT	NM_012996.1	NM_012996.1		25504	6981315	NM_012996.1	Oxt	NP_037128.1	ILMN_1360728	0002120270	S	2628	CGCTAGACCTGGATATGCGCAAGTGTCTTCCCTGCGGACCCGGCGGCAAA	3	+	118194359-118194374:118194598-118194631	3q36	Rattus norvegicus oxytocin (Oxt), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence TAS]; The secretion of milk by the mammary gland [goid 7595] [evidence TAS]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence TAS];  [goid 5185] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an oxytocin receptor [goid 31855] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62658986-S	ILMN_59467	LOC498190	XM_573406.1	XM_573406.1		498190	62658986	XM_573406.1	LOC498190	XP_573406.1	ILMN_1359966	0002470670	S	2389	TGCAAAAGAAAGCCCCCAGACTCAAGCTCCCAGAGAAACCTGCCCACCCC				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein C130098D09 (LOC498190), mRNA.					
Rattus norvegicus	RefSeq	GI_62655404-S	ILMN_266797	RGD1564730_PREDICTED	XM_001067793.1	XM_001067793.1		301609	109487526	XM_001067793.1	RGD1564730_predicted	XP_001067793.1	ILMN_1353639	0002190446	S	47	AGGTGACAAAGAATGTCAGGAAGTTGAGACGCAGTCGGTGCAGTGGGCGC				9q36	PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (predicted) (RGD1564730_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644544-S	ILMN_275021	RGD1566117_PREDICTED	XM_001077354.1	XM_001077354.1		310982	109467680	XM_001077354.1	RGD1566117_predicted	XP_001077354.1	ILMN_1348985	0001990372	S	3086	CCCGATATGGCCGTTTGTGAAACTGAGTGGAAGATTGCCATGGGCGGTGC				2q44	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23033 (predicted), transcript variant 1 (RGD1566117_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644910-S	ILMN_55266	USP20_PREDICTED	XM_231148.3	XM_231148.3		311856	62644910	XM_231148.3	Usp20_predicted	XP_231148.3	ILMN_1363271	0000770044	S	4794	GGGCTGGTGGAAGGAACCTGCTTGAAATAGAAGCTGCAGGGTGAGGCAGG				3p12	PREDICTED: Rattus norvegicus ubiquitin specific protease 20 (predicted) (Usp20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32964820-S	ILMN_268951	SMP2A	NM_012695.2	NM_012695.2		24902	32964820	NM_012695.2	Smp2a	NP_036827.2	ILMN_1359358	0002630341	S	742	GGAACTGATTCTTCCTGGTTTTACTTTCATGAGAAACGGCACTACTGGGG	1	-	74554007-74554019:74555560-74555596	1q21	Rattus norvegicus rat senescence marker protein 2A gene, exons 1 and 2 (Smp2a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + an alcohol = adenosine 3',5'-bisphosphate + an alkyl sulfate [goid 4027] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RATSMP2A; RATSMP2B	RATSMP2A; RATSMP2B
Rattus norvegicus	RefSeq	GI_27465560-S	ILMN_280259	SGPL1	NM_173116.1	NM_173116.1		286896	27465560	NM_173116.1	Sgpl1	NP_775139.1	ILMN_1352496	0002690707	S	1789	CCTGTGACTCAGGGTAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAAC	20	-	28459809-28459858	20q11	Rattus norvegicus sphingosine phosphate lyase 1 (Sgpl1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving ceramides, any N-acylated sphingoid [goid 6672] [evidence ISS]; The chemical reactions and pathways involving ceramides, any N-acylated sphingoid [goid 6672] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IEA]	Catalysis of the reaction: sphinganine 1-phosphate = phosphoethanolamine + palmitaldehyde [goid 8117] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound [goid 16831] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	spl; Spgl1	spl; Spgl1
Rattus norvegicus	RefSeq	GI_62662589-S	ILMN_63947	LOC306428	XM_224824.3	XM_224824.3		306428	62662589	XM_224824.3	LOC306428	XP_224824.3	ILMN_1366138	0002680541	S	476	AGATGCTGGACTATTGCTGGCCTCACTGTACCAGAGTGCTGGTGGCATGC				16p12	PREDICTED: Rattus norvegicus similar to Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein (LOC306428), mRNA.					
Rattus norvegicus	RefSeq	GI_62661992-S	ILMN_49799	LOC305955	XM_224295.3	XM_224295.3		305955	62661992	XM_224295.3	LOC305955	XP_224295.3	ILMN_1355759	0006760059	S	5138	GAACCAGCCCAAGTCCAGGAAGGCTTACGTGCCCAATCTTGCGTCTCTGC				15q11	PREDICTED: Rattus norvegicus similar to KIAA0853 protein (predicted) (LOC305955), mRNA.					
Rattus norvegicus	RefSeq	GI_32996720-S	ILMN_292961	LOC316632	NM_182671.1	NM_182671.1		316632	32996720	NM_182671.1	LOC316632	NP_872612.1	ILMN_1356568	0003390519	S	1858	AGTCTGTACCGCGAATCCTGCTGTGGCTGCTCCGAGCACGTGTAACTTAA	6	-	62280358-62280407	6q21	Rattus norvegicus NADH dehydrogenase 1 alpha subcomplex 10-like protein (LOC316632), mRNA.					
Rattus norvegicus	RefSeq	GI_6981141-S	ILMN_275797	LAMB2	NM_012974.1	NM_012974.1		25473	6981141	NM_012974.1	Lamb2	NP_037106.1	ILMN_1365992	0002480324	S	5209	AAACTGTGAGGGCGTTGGCTGAACGGAAGGCTGAAGGTGTTCTGGCCGCA	16|NW_047483.1	+	279768-279817		Rattus norvegicus laminin, beta 2 (Lamb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Long distance growth of a single axon process involved in regeneration of the neuron [goid 48677] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	SLAM; MGC93588	SLAM; MGC93588
Rattus norvegicus	RefSeq	GI_56605933-S	ILMN_298706	PMAIP1	NM_001008385.1	NM_001008385.1		492821	56605933	NM_001008385.1	Pmaip1	NP_001008386.1	ILMN_1375199	0004920722	S	19	CGTCGGAACGCGCCATTGAACCCAACGCGGGCAGAGTTACCGCCTGAATT	18	+	62914863-62914896:62916681-62916696	18q12.1	Rattus norvegicus phorbol-12-myristate-13-acetate-induced protein 1 (Pmaip1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; The process by which a protein is incorporated into a mitochondrial membrane as an early step in apoptosis [goid 1844] [evidence ISS]; The process by which a protein is incorporated into a mitochondrial membrane as an early step in apoptosis [goid 1844] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis [goid 6921] [evidence ISS]; The process of apoptosis in cells infected with a virus [goid 6926] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence ISS]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus [goid 43331] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Noxa	Noxa
Rattus norvegicus	RefSeq	GI_62665744	ILMN_288581	STK38	NM_001015025.1	NM_001015025.1		361813	62543534	NM_001015025.1	Stk38	NP_001015025.1	ILMN_1650371	0003870121	S	1087	AGCCCCACGAGCCAGTTTGGTAGGTGGTGTACGGAGAACTTGATTTTCCC	20	-	7258970-7259019	20p12	Rattus norvegicus serine/threonine kinase 38 (Stk38), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109574	MGC109574
Rattus norvegicus	RefSeq	GI_62642491-S	ILMN_66942	RBM20_PREDICTED	XM_220079.4	XM_220079.4		309544	109460263	XM_220079.4	Rbm20_predicted	XP_220079.4	ILMN_1356385	0000580113	S	3791	CTCAGGGACAGAACTGAGACCAGAGAAGAAGGAGAGCCAGGCAGGACATG	1	+	260141299-260141348	1q55	PREDICTED: Rattus norvegicus RNA binding motif protein 20 (predicted) (Rbm20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660775-S	ILMN_287837	LOC685909	XM_001065720.1	XM_001065720.1		685909	109500009	XM_001065720.1	LOC685909	XP_001065720.1	ILMN_1356468	0002470593	S	815	TCCTCACTGTGTGTGACTGGGCAGAGGGTACCAGTCGGTGTGTGGGAAAG	14	-	87181682-87181731	14q21	PREDICTED: Rattus norvegicus similar to H2A histone family, member V isoform 1 (LOC685909), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576668-S	ILMN_277824	OLR1695	NM_001000272.1	NM_001000272.1		294159	47576668	NM_001000272.1	Olr1695	NP_001000272.1	ILMN_1355949	0006370253	S	747	CTACGGGAGCATCACAGTCATCTACATCCAGCCAAACAGTTCATACGCCC	20	-	678481-678530	20p12	Rattus norvegicus olfactory receptor 1695 (Olr1695), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr20-679277-678312_ORF; Olr1695	ratchr20-679277-678312_ORF; Olr1695
Rattus norvegicus	RefSeq	GI_62658853-S	ILMN_51653	VPS37B_PREDICTED	XM_213769.4	XM_213769.4		288659	109495839	XM_213769.4	Vps37b_predicted	XP_213769.2	ILMN_1369686	0000870048	S	2223	GGGCCACCGGCAGGACCATCAGCCTTTGTCCCCAAGTCATCCTATATTCC	12	+	33712780-33712829	12q15	PREDICTED: Rattus norvegicus vacuolar protein sorting 37B (yeast) (predicted) (Vps37b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540668-S	ILMN_298539	LAT	NM_030853.1	NM_030853.1		81511	13540668	NM_030853.1	Lat	NP_110480.1	ILMN_1353458	0001500168	S	973	AGCTATCAGTCCTGGAACTGGACTTGCTGGGGGTGTCGCTAAGGGAGTCC	1	-	185450320-185450369	1q36	Rattus norvegicus linker for activation of T cells (Lat), mRNA.	An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence IEA]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; The regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a mast cell [goid 43303] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell activation [goid 50863] [evidence ISS]	Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108666	MGC108666
Rattus norvegicus	RefSeq	GI_62661084	ILMN_57329	LOC501954	XM_577381.1	XM_577381.1		501954	62661084	XM_577381.1	LOC501954	XP_577381.1	ILMN_1650753	0007100088	S	41	CTCATGAACGCACGATGAGAAGACTCATCAATCGTCTCCGGCAGTCCCGG				15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (LOC501954), mRNA.					
Rattus norvegicus	RefSeq	GI_62644713-S	ILMN_273114	NDOR1_PREDICTED	XM_001072474.1	XM_001072474.1		311799	109469428	XM_001072474.1	Ndor1_predicted	XP_001072474.1	ILMN_1350709	0000520010	S	1671	GGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAGGTGCCTACTTCTACTT				3p13	PREDICTED: Rattus norvegicus NADPH dependent diflavin oxidoreductase 1 (predicted) (Ndor1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639775-S	ILMN_279562	RGD1305240_PREDICTED	XM_001080045.1	XM_001080045.1		361578	109461972	XM_001080045.1	RGD1305240_predicted	XP_001080045.1	ILMN_1355172	0004060270	S	4151	GGCCCATGCCGGAAGCTGCAGCAACATCTGTCCATACCAAAAGGATCTGC				1q22	PREDICTED: Rattus norvegicus similar to pM5 protein; DNA segment, Chr 7, ERATO Doi 156, expressed (predicted) (RGD1305240_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667585-S	ILMN_70331	RGD1560171_PREDICTED	XM_346366.3	XM_346366.3		367949	109511294	XM_346366.3	RGD1560171_predicted	XP_346367.3	ILMN_1367203	0002120050	S	778	GGCACTCCAAGTTCATCACAAGATGGAGGTATTGCCAGCAGTGGGCGTCG	X	+	146111731-146111780	Xq36	PREDICTED: Rattus norvegicus similar to PRO0149 protein (predicted) (RGD1560171_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556893-S	ILMN_279589	AKR1B10	NM_001013084.1	NM_001013084.1		296972	61556893	NM_001013084.1	Akr1b10	NP_001013102.1	ILMN_1351866	0000450270	S	1135	CCTGATGCGTTCCCGTGGAGGACACTCTTCACTGATTTCCAACCTACCCC	4	+	61770978-61771027	4q22	Rattus norvegicus aldo-keto reductase family 1, member B10 (aldose reductase) (Akr1b10), mRNA.			Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_42476143-S	ILMN_283102	PFN1	NM_022511.2	NM_022511.2		64303	42476143	NM_022511.2	Pfn1	NP_071956.2	ILMN_1371186	0002030100	S	298	GTGAATGGGCTGACACTTGGGGGCCAGAAATGTTCTGTGATCCGGGACTC	10	-	57532652-57532701	10q24	Rattus norvegicus profilin 1 (Pfn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence TAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644684-S	ILMN_278277	RGD1305847_PREDICTED	XM_001076800.1	XM_001076800.1		296532	109469492	XM_001076800.1	RGD1305847_predicted	XP_001076800.1	ILMN_1366934	0004560133	S	1988	GGAGATTGCCAGAGGCACCTCCAGTCTCAGTTGTGTAGACACTAAAGAGC				3p13	PREDICTED: Rattus norvegicus similar to speckle-type POZ protein (predicted) (RGD1305847_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648399-S	ILMN_66775	LOC502895	XM_578397.1	XM_578397.1		502895	62648399	XM_578397.1	LOC502895	XP_578397.1	ILMN_1364424	0000050438	S	546	GGGGAGCATCAGGTTGTCCTCTGTTGGGAGCAGCTAAAGATGGCACTGAC					PREDICTED: Rattus norvegicus similar to sentrin 17 (LOC502895), mRNA.					
Rattus norvegicus	RefSeq	GI_34869055	ILMN_287841	RGD1561956_PREDICTED	XM_344287.1	XM_344287.1		364242	34869055	XM_344287.1	RGD1561956_predicted	XP_344288.1	ILMN_1650883	0005270411	S	3	GGCTGAAGGAGGATTTGATCCCTGTGAATGTATTTGCTCTCAGGAACGCG	15	+	4615262-4615311	15p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (predicted) (RGD1561956_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651255-S	ILMN_275378	RGD1305298_PREDICTED	XM_001071169.1	XM_001071169.1		299330	109479996	XM_001071169.1	RGD1305298_predicted	XP_001071169.1	ILMN_1371179	0003710619	S	554	CCAGGCTTGGGAGTGAGAGAGATAAGGGGTCCAGGCTGTCGATTTCCAAG				6q32	PREDICTED: Rattus norvegicus hypothetical LOC299330 (predicted) (RGD1305298_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758297-S	ILMN_288149	PSMB7	NM_053532.1	NM_053532.1		85492	16758297	NM_053532.1	Psmb7	NP_445984.1	ILMN_1366495	0002480022	S	749	GAGAAAGGCACTACCGCTGTCCTCACGGAGAAAGTCACCCCTCTGGAGCT	3	-	18384370-18384419	3q11	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 7 (Psmb7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Z	Z
Rattus norvegicus	RefSeq	GI_27705007-S	ILMN_281833	ZFP93_PREDICTED	XM_001074072.1	XM_001074072.1		296399	109471391	XM_001074072.1	Zfp93_predicted	XP_001074072.1	ILMN_1354376	0006020605	S	951	CAGCAGCCTGGCCAAACACATCGACAAGGTGCACAGGGAAAGGGCCAAGA				3q42	PREDICTED: Rattus norvegicus zinc finger protein 64 (predicted) (Zfp93_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643734-S	ILMN_62129	PRCC_PREDICTED	XM_227476.4	XM_227476.4		310687	109465044	XM_227476.4	Prcc_predicted	XP_227476.3	ILMN_1371604	0005220711	S	1956	CTATGACCTTGGTTGGGAGTTCTGCTCCTGTCGGGTGTGATGAGATGGTG	2	-	179932036-179932085	2q34	PREDICTED: Rattus norvegicus papillary renal cell carcinoma (translocation-associated) (predicted) (Prcc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799428-S	ILMN_294049	HPS6	NM_181432.2	NM_181432.2		309446	56799428	NM_181432.2	Hps6	NP_852097.1	ILMN_1363270	0003940433	S	2475	GCTGACGTGGGAGTTCATTCGTAGAGCACGGAGATGCGAAGAGTACCCGG	1	+	251228818-251228841:251228842-251228867	1q54	Rattus norvegicus Hermansky-Pudlak syndrome 6 (Hps6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane [goid 6996] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Hsp6; MGC93064	Hsp6; MGC93064
Rattus norvegicus	RefSeq	GI_62657951-S	ILMN_275746	CCDC58_PREDICTED	XM_001071079.1	XM_001071079.1		288065	109494466	XM_001071079.1	Ccdc58_predicted	XP_001071079.1	ILMN_1363823	0006350438	S	1010	TCTCGTCGCCTGAGCATGACAGATGTCAGCAGGCCAACTTCTGAGAGTGG				11q22	PREDICTED: Rattus norvegicus coiled-coil domain containing 58 (predicted) (Ccdc58_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656308-S	ILMN_59459	EFNB3_PREDICTED	XM_340824.3	XM_340824.3		360546	109488371	XM_340824.3	Efnb3_predicted	XP_340825.1	ILMN_1355796	0004670008	S	3085	TGTCCACCAGAGGTCAAGCCATCTTTCTGGCGCTGTAGTTCCCAGCTCCT	10	-	56373472-56373521	10q24	PREDICTED: Rattus norvegicus ephrin B3 (predicted) (Efnb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644852-S	ILMN_52095	LOC499768	XM_575106.2	XM_575106.2		499768	109467984	XM_575106.2	LOC499768	XP_575106.2	ILMN_1374429	0000060324	S	771	CCACTGACCCTAACAGCGAGTGGAAAGAGCACGCTGAAGCAGATACCTTT	3	+	9155256-9155282:9155743-9155765	3p12	PREDICTED: Rattus norvegicus similar to TBC1 domain family, member 13 (LOC499768), mRNA.					
Rattus norvegicus	RefSeq	GI_47577906-S	ILMN_300525	OLR1149	NM_001000874.1	NM_001000874.1		405172	47577906	NM_001000874.1	Olr1149	NP_001000874.1	ILMN_1354028	0005910253	S	404	TGGCTATTTGTCACCCCCTGAGGTACACAGTTATCATGGAACCCTGTTTC	8	-	17754810-17754859	8q13	Rattus norvegicus olfactory receptor 1149 (Olr1149), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1149	Olr1149
Rattus norvegicus	RefSeq	GI_62650903	ILMN_277498	RGD1562540_PREDICTED	XM_001080862.1	XM_001080862.1		500678	109479549	XM_001080862.1	RGD1562540_predicted	XP_001080862.1	ILMN_1651093	0001850075	S	180	CTTGGAGGAAAAGCAGAGGAGTCTGCAGATCATGAGGCAGATCATGGCCG				6q24	PREDICTED: Rattus norvegicus RGD1562540 (predicted) (RGD1562540_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606382-S	ILMN_267252	OLR132	NM_001001273.1	NM_001001273.1		293271	47606382	NM_001001273.1	Olr132	NP_001001273.1	ILMN_1354683	0000510037	S	599	CAGTTGTGGTTGTGTTTGCAATGGTCCTGCTAGACTTCCTGGTCATCTTC	1	+	161718024-161718073	1q32	Rattus norvegicus olfactory receptor 132 (Olr132), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr132	Olr132
Rattus norvegicus	RefSeq	GI_62652567-S	ILMN_52540	LOC315059	XM_235402.3	XM_235402.3		315059	62652567	XM_235402.3	LOC315059	XP_235402.3	ILMN_1353791	0003140008	S	5686	GCGCCAGAAACAACTCTGAACTTGTCCTACATGCCAGTGAGTGCCAGCGG				7q34	PREDICTED: Rattus norvegicus similar to KIAA1882 protein (predicted) (LOC315059), mRNA.					
Rattus norvegicus	RefSeq	GI_54312099-S	ILMN_57814	DNAJB13	NM_001005885.2	NM_001005885.2		308857	67972661	NM_001005885.2	Dnajb13	NP_001005885.1	ILMN_1372844	0002060433	S	945	ACTGCTGACCTAATTCCGGGGGACCTGAGCAGGAACAGGGATGGAGAGGG	1	-	157932759-157932796:157932797-157932808	1q32	Rattus norvegicus DnaJ (Hsp40) related, subfamily B, member 13 (Dnajb13), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	Tsarg1	Tsarg1
Rattus norvegicus	RefSeq	GI_62660550-S	ILMN_264804	DHX15_PREDICTED	XM_001054651.1	XM_001054651.1		289693	109500662	XM_001054651.1	Dhx15_predicted	XP_001054651.1	ILMN_1360778	0002850292	S	2573	CACAGTACTGAGTGCACTGCTTAGAACTGAAGCTCCTCAGAGGACAGCTT				14q11	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 15 (predicted) (Dhx15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591944-S	ILMN_297451	GABRP	NM_031029.1	NM_031029.1		81658	13591944	NM_031029.1	Gabrp	NP_112291.1	ILMN_1368693	0004590711	S	1034	GCTCCTTACAGCAGATGGCAGTCAAAGATAGGGGGCCAGCAAAGGACTCA	10	-	18454701-18454750	10q12	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, pi (Gabrp), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IPI]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638948-S	ILMN_51996	SRP72_PREDICTED	XM_214017.4	XM_214017.4		289566	109458073	XM_214017.4	Srp72_predicted	XP_214017.4	ILMN_1368838	0004610338	S	2650	AGACCCAGGGTTCTGAGGGCAAATGGGTTCGGGCTTCTCAATCAGAACAC	1	+	75124009-75124058	1q21	PREDICTED: Rattus norvegicus signal recognition particle 72 (predicted) (Srp72_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638952-S	ILMN_51996	SRP72_PREDICTED	XM_214017.4	XM_214017.4		289566	109458073	XM_214017.4	Srp72_predicted	XP_214017.4	ILMN_1370730	0002510064	S	2877	TCTGTGGCCTGAATGCTGCTCTCGTCTTTCATTGCTAGCAGGCCACTGTC	1	+	75124236-75124285	1q21	PREDICTED: Rattus norvegicus signal recognition particle 72 (predicted) (Srp72_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666090-S	ILMN_57796	LOC502429	XM_577911.1	XM_577911.1		502429	62666090	XM_577911.1	LOC502429	XP_577911.1	ILMN_1368137	0006130504	S	144	GACGGAGAAGACGGAGAAGACGAGCAGAGACAGCAACAGATCCTCATCAC					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC502429), mRNA.					
Rattus norvegicus	RefSeq	GI_13591984-S	ILMN_264813	MIF	NM_031051.1	NM_031051.1		81683	13591984	NM_031051.1	Mif	NP_112313.1	ILMN_1356539	0002100017	S	406	GCTGGAACGGTTCCACCTTCGCTTGAGCCCGGGCCTCACTTACCTGCACC	20	+	13192705-13192731:13192732-13192754	20p12	Rattus norvegicus macrophage migration inhibitory factor (Mif), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence IEP]; The process by which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system [goid 2035] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response [goid 2675] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage [goid 30330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menaquinone (vitamin K2) stimulus [goid 32572] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus [goid 33197] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43268] [evidence IMP]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of glycolysis [goid 45821] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IMP]; Any process that activates, maintains or increases the rate of axon regeneration [goid 48680] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]; Catalysis of the reaction: keto-phenylpyruvate = enol-phenylpyruvate [goid 50178] [evidence IEA]	MGC72801	MGC72801
Rattus norvegicus	RefSeq	GI_6981247-S	ILMN_263024	NCL	NM_012749.1	NM_012749.1		25135	6981247	NM_012749.1	Ncl	NP_036881.1	ILMN_1360147	0002350332	S	1956	TGAAGGTGGCTTTGGTGGTCGAGGTGGAGGCAGAGGAGGTTTCGGAGGCA	9	-	85113117-85113166	9q35	Rattus norvegicus nucleolin (Ncl), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]	MGC93572	MGC93572
Rattus norvegicus	RefSeq	GI_62078880-S	ILMN_279221	LOC313936	NM_001014074.1	NM_001014074.1		313936	62078880	NM_001014074.1	LOC313936	NP_001014096.1	ILMN_1350252	0005890369	S	1335	GGCTCTTTTCTGGGGTGCTGGGGTCAGTATCTGGATCAGTAAGGGATGGG	Un|NW_047888.1	+	86075-86124		Rattus norvegicus hypothetical LOC313936 (LOC313936), mRNA.					
Rattus norvegicus	RefSeq	GI_62661420	ILMN_63850	LOC361101	XM_341387.2	XM_341387.2		361101	62661420	XM_341387.2	LOC361101	XP_341388.1	ILMN_1649720	0002060706	S	38	CCATGAACATTGTCGAGGTGGCTTTAAAGATGGACTCTTCTCAGGGCCTC					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC361101), mRNA.					
Rattus norvegicus	RefSeq	GI_27465570-S	ILMN_280749	FAM5C	NM_173121.1	NM_173121.1		286901	27465570	NM_173121.1	Fam5c	NP_775144.1	ILMN_1360160	0006290400	S	2475	CCATTCGGGACCTGATTTTGCAGCTGGACTACCCCTACACTCAGGGATCC	13	+	61023636-61023685	13q21	Rattus norvegicus family with sequence similarity 5, member C (Fam5c), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IMP]			
Rattus norvegicus	RefSeq	GI_62659351-S	ILMN_275425	UBE2T_PREDICTED	XM_001062580.1	XM_001062580.1		360847	109498663	XM_001062580.1	Ube2t_predicted	XP_001062580.1	ILMN_1357068	0000460500	S	626	GGCTGGTGAAGAGGAGGTAGGCATCTCATCGGAGGTTGGTGACTCTGAGG				13q13	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2T (putative) (predicted) (Ube2t_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865871-A	ILMN_270482	ENAH	NM_001012150.1	NM_001012150.1		360891	58865871	NM_001012150.1	Enah	NP_001012150.1	ILMN_1376318	0001690239	S	1722	AATGGATACACAGTCAGGAGGGAAAACCGCCAACCTCTGGAAGCCTTCAG	13	-	97919894-97919943	13q26	Rattus norvegicus enabled homolog (Drosophila) (Enah), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The directed movement of substances within a cell [goid 46907] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin [goid 5522] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657983-S	ILMN_272231	OSBPL11_PREDICTED	XM_001065111.1	XM_001065111.1		303888	109494423	XM_001065111.1	Osbpl11_predicted	XP_001065111.1	ILMN_1368034	0000940270	S	2839	GAACGGCAGAGAACAGAAGAAAGGCTTCGGACTGAAACAGGCACACCCTG				11q22	PREDICTED: Rattus norvegicus oxysterol binding protein-like 11 (predicted) (Osbpl11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641777-S	ILMN_279402	MRPL49	XM_001071219.1	XM_001071219.1		309176	109463402	XM_001071219.1	Mrpl49	XP_001071219.1	ILMN_1358349	0006220301	S	748	AGCTGTCCAACACAGGAGGCCACAGCAACCATCAGGCTAACAAGGCAGAC				1q43	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L49 (Mrpl49), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639137-S	ILMN_273719	IGSF4C_PREDICTED	XM_001076576.1	XM_001076576.1		365216	109461408	XM_001076576.1	Igsf4c_predicted	XP_001076576.1	ILMN_1356371	0006900059	S	1896	CCGGGGAGGGGGAAAGGAGTTTGGAGGGGATGTGTGGTCTCTATGGTTTT				1q21	PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 4C (predicted) (Igsf4c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653210-S	ILMN_64283	LOC500942	XM_576352.1	XM_576352.1		500942	62653210	XM_576352.1	LOC500942	XP_576352.1	ILMN_1359688	0000110082	S	690	ACTGATGTCAGTACCATAAAGTCAGGAGTACTTGGTCAACGGTTGGGCCA					PREDICTED: Rattus norvegicus similar to Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) (LOC500942), mRNA.					
Rattus norvegicus	RefSeq	GI_62639808-S	ILMN_282595	RGD1561456_PREDICTED	XM_001080926.1	XM_001080926.1		499155	109462004	XM_001080926.1	RGD1561456_predicted	XP_001080926.1	ILMN_1370575	0002350619	S	1502	GGGCATCTGGACAGACCCTATCCCATGGAGGGAACAAGCATACTTCTCAC				1q22	PREDICTED: Rattus norvegicus similar to Fanconi anemia, complementation group F (predicted) (RGD1561456_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649601-S	ILMN_264276	RRAGC_PREDICTED	XM_001055506.1	XM_001055506.1		298514	109477190	XM_001055506.1	Rragc_predicted	XP_001055506.1	ILMN_1355775	0001410411	S	2390	CGTCAGTGCCGCTGGTGAGGGATGTACTCAGGTCTGTTACCCAGCAGTGA				5q36	PREDICTED: Rattus norvegicus Ras-related GTP binding C (predicted) (Rragc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664317-S	ILMN_291099	RGD1565137_PREDICTED	XR_008395.1	XR_008395.1		364848	109507242	XR_008395.1	RGD1565137_predicted		ILMN_1360379	0006900739	S	966	GGGTGGTGGACCTCATGGCCTACATGGCCTACATGGCCTCCAAGGAGTAA				18p11	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1565137_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591905-S	ILMN_264116	ADCY2	NM_031007.1	NM_031007.1		81636	13591905	NM_031007.1	Adcy2	NP_112269.1	ILMN_1371561	0005360133	S	3772	CTGTGTTCACCTACCCATGTGTCTCATTGCCAGTGGTCGTCCTTGGGGGC	17	+	5040342-5040391	17p14	Rattus norvegicus adenylate cyclase 2 (brain) (Adcy2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]	The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IDA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638838-S	ILMN_292585	APEG3	NM_001034160.1	NM_001034160.1		619476	77682196	NM_001034160.1	Apeg3	NP_001029332.1	ILMN_1368576	0000630397	S	242	CGCTAGATCACAGTAGTGCCTAATGAAGGGTTGGGAGCCACAGGAGAGGC	1	-	65525785-65525834	1q12	Rattus norvegicus antisense paternally expressed gene 3 (Apeg3), mRNA.					
Rattus norvegicus	RefSeq	GI_62640747-S	ILMN_52434	LOC499187	XM_579928.1	XM_579928.1		499187	62640747	XM_579928.1	LOC499187	XP_579928.1	ILMN_1362202	0002360731	S	482	CCCAGTGCAGATGGGGGTGAGGTGTGCGGGAACACGACTGAGAGTTACAA					PREDICTED: Rattus norvegicus LOC499187 (LOC499187), mRNA.					
Rattus norvegicus	RefSeq	GI_62664200-S	ILMN_69974	CDC25C_PREDICTED	XM_226071.4	XM_226071.4		307511	109506433	XM_226071.4	Cdc25c_predicted	XP_226071.4	ILMN_1356159	0001770685	S	1219	GAACCCCAGGGCTACTGTCCTATGCTTCACCAGGACCACCAGGCCGAGCT	18	-	27206847-27206896	18p12	PREDICTED: Rattus norvegicus cell division cycle 25 homolog C (S. cerevisiae) (predicted) (Cdc25c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113792-S	ILMN_278399	V1RM2	NM_001008921.1	NM_001008921.1		494270	57113792	NM_001008921.1	V1rm2	NP_001008921.1	ILMN_1351024	0002030735	S	794	ATCAGTGGCTGGTTGATGCTACTGTTTTCCTAGGTGCATGCTTCCCAGCG	1	-	62690383-62690432	1q12	Rattus norvegicus vomeronasal 1 receptor, M2 (V1rm2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646573-S	ILMN_69584	LOC366279	XM_345488.2	XM_345488.2		366279	62646573	XM_345488.2	LOC366279	XP_345489.2	ILMN_1357153	0006040050	S	564	ATTGTCTCCAAGGGAAAAAACGGAGCTGAAGAGGCAGCCAGAGCTGCGGC					PREDICTED: Rattus norvegicus similar to sarcosine dehydrogenase (LOC366279), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid [goid 6546] [evidence IEA]	Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein [goid 4047] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.19113	ILMN_160961	RN.19113	Rn.19113		Rn.19113		49582473	CO400557			ILMN_1530327	0004780142	S	278	GGATTTAGCAGATTTTGAAGATAATTGGACACAAGGAGAAGGATAATAAA					AGENCOURT_27527504 NIH_MGC_254 Rattus norvegicus cDNA clone IMAGE:7315531 5', mRNA					
Rattus norvegicus	RefSeq	GI_62665808-S	ILMN_67105	TMEM1_PREDICTED	XM_228065.4	XM_228065.4		309678	109509279	XM_228065.4	Tmem1_predicted	XP_228065.4	ILMN_1350441	0002760133	S	3853	GCACTGGCATGCAGATCCTGGTCATTCCCAGTCAAGACGACCACGTCCTG	20	+	10833079-10833128	20p12	PREDICTED: Rattus norvegicus transmembrane protein 1 (predicted) (Tmem1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653400-S	ILMN_50995	LOC503186	XM_578709.1	XM_578709.1		503186	62653400	XM_578709.1	LOC503186	XP_578709.1	ILMN_1350228	0003440390	S	117	GGTTTCAGAGTAGGATTAGTGGCAAACTCGGCGTCCGTGAACCCCTCCGG					PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (LOC503186), mRNA.					
Rattus norvegicus	RefSeq	GI_6981401-S	ILMN_298702	PRKG2	NM_013012.1	NM_013012.1		25523	6981401	NM_013012.1	Prkg2	NP_037144.1	ILMN_1361898	0000070368	S	2761	CAGGGCTCAGCAGACACCAGGGACTTCCTCCTCCGATTGTGGTTTCCAGA	14	+	12005333-12005382	14p22	Rattus norvegicus protein kinase, cGMP-dependent, type II (Prkg2), mRNA.	An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of cGMP [goid 4692] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate) [goid 30553] [evidence IEA]	GDPKII; cGKII	GDPKII; cGKII
Rattus norvegicus	RefSeq	GI_56090420-S	ILMN_290096	ACPL2	NM_001007710.1	NM_001007710.1		315939	56090420	NM_001007710.1	Acpl2	NP_001007711.1	ILMN_1352928	0006200711	S	2666	GACTGCGTGGTTCCTCGGTCAATGGTGCTAGCTCGTTCTGAAGACAGGGC	8	-	101917955-101918004	8q31	Rattus norvegicus acid phosphatase-like 2 (Acpl2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]	MGC94167	MGC94167
Rattus norvegicus	RefSeq	GI_16758211-S	ILMN_296884	FUT9	NM_053465.1	NM_053465.1		84597	16758211	NM_053465.1	Fut9	NP_445917.1	ILMN_1363444	0003940537	S	1494	CACGCTGCATTTGGGTCACAGTTTATTTTTCCTGCTCTCCCTTGAGGACC	5	-	40717429-40717478	5q21	Rattus norvegicus fucosyltransferase 9 (alpha (1,3) fucosyltransferase) (Fut9), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence ISS]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence NAS]; Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha(1,3)-linkage [goid 46920] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641635-S	ILMN_264854	DUSP8_PREDICTED	XM_001063880.1	XM_001063880.1		361679	109463221	XM_001063880.1	Dusp8_predicted	XP_001063880.1	ILMN_1366775	0004560139	S	1955	GGCAAGCAAACCAGCTTCTCTGGCAGCGTGGAGGTCATCGAAGTATCGTG				1q41	PREDICTED: Rattus norvegicus dual specificity phosphatase 8 (predicted) (Dusp8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641637-S	ILMN_264854	DUSP8_PREDICTED	XM_001063880.1	XM_001063880.1		361679	109463221	XM_001063880.1	Dusp8_predicted	XP_001063880.1	ILMN_1352481	0005570091	S	24	GTACCCAGAACACTGCAAGGCCACGCCCTCCTCACTTCAGGGGTCACTCT				1q41	PREDICTED: Rattus norvegicus dual specificity phosphatase 8 (predicted) (Dusp8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717990-S	ILMN_59530	LOC501272	XM_576688.1	XM_576688.1		501272	62717990	XM_576688.1	LOC501272	XP_576688.1	ILMN_1364512	0005390685	S	1616	GGAGAAAGAAGGCGTTCTGGAGAAGTTCGGTCCTAAAAATGTGGCTCCCC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501272), mRNA.					
Rattus norvegicus	RefSeq	GI_18093103-S	ILMN_272533	CASKIN1	NM_080690.1	NM_080690.1		140722	18093103	NM_080690.1	Caskin1	NP_542421.1	ILMN_1365348	0002650168	S	5447	GCCCACCCTGAATTCCCATGGACGTTCTGCTCATGGTCTGAGGCTGTGTT	10	+	13760075-13760124	10q12	Rattus norvegicus CASK interacting protein 1 (Caskin1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62650988-A	ILMN_275874	SMOC1	NM_001002835.1	NM_001002835.1		314280	50657391	NM_001002835.1	Smoc1	NP_001002835.1	ILMN_1376708	0006840403	S	1236	TAAGGCCATCTCGCTGCCTGAGCTGAAGGGCTGCCTGGGTGTTAGCAAAG	6	+	104993998-104994047	6q24	Rattus norvegicus SPARC related modular calcium binding 1 (Smoc1), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647392-S	ILMN_64803	LOC500165	XM_575517.1	XM_575517.1		500165	62647392	XM_575517.1	LOC500165	XP_575517.1	ILMN_1358599	0006770347	S	4	GGTCTGGATACAGGGGCCTTCATGAGGAAAAAGACTCAGGTGGCCGGCAT					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC500165), mRNA.					
Rattus norvegicus	RefSeq	GI_62662172-S	ILMN_296607	DCP1A_PREDICTED	XM_001063126.1	XM_001063126.1		361109	109503814	XM_001063126.1	Dcp1a_predicted	XP_001063126.1	ILMN_1368223	0007100347	S	1679	CCAGCTGCCCCTCCCCCCTCACTATTGGAGCAGAAAATCAGAGGAAGCCT				16p16	PREDICTED: Rattus norvegicus DCP1 decapping enzyme homolog A (S. cerevisiae) (predicted) (Dcp1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222295-A	ILMN_282472	CDH19	NM_001009448.1	NM_001009448.1		360835	57222295	NM_001009448.1	Cdh19	NP_001009448.1	ILMN_1376619	0003170086	S	2135	GTGCTCCCCCCTTTGACTCACTACAGACTTTTGCCTATGAGGGGACTGGG	13	-	18148855-18148904	13p12	Rattus norvegicus cadherin 19, type 2 (Cdh19), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655099-S	ILMN_65701	LOC316415	XM_237184.3	XM_237184.3		316415	62655099	XM_237184.3	LOC316415	XP_237184.3	ILMN_1362466	0006110133	S	3114	CTACCAGAGGGTACTGACTTGATTTCTCCACAAGGACCACACTGCCTTTG				9q31	PREDICTED: Rattus norvegicus similar to hypothetical protein D630010C10 (predicted) (LOC316415), mRNA.					
Rattus norvegicus	RefSeq	GI_8393854-S	ILMN_289862	NUP54	NM_017361.1	NM_017361.1		53372	8393854	NM_017361.1	Nup54	NP_059057.1	ILMN_1366358	0003780408	S	1921	CCGAGCTGCTTCCTACGTAACACGACAAGCTAATCCCCTGCCAGTTGGAG	14	+	17196726-17196775	14p22	Rattus norvegicus nucleoporin 54 (Nup54), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence TAS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IDA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IDA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Enables the directed movement of substances between the nucleus and the cytoplasm of a cell [goid 5487] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62667001-S	ILMN_296947	RGD1565507_PREDICTED	XM_001063597.1	XM_001063597.1		503443	109511929	XM_001063597.1	RGD1565507_predicted	XP_001063597.1	ILMN_1368443	0003850670	S	210	GTGGGGTCACCAAGCCCATGCTGAAACAAGCAAGATAAAAGTCATGCAGG				Xq22	PREDICTED: Rattus norvegicus similar to melanoma antigen 2 (predicted) (RGD1565507_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667581-S	ILMN_70161	LOC367946	XM_346364.2	XM_346364.2		367946	62667581	XM_346364.2	LOC367946	XP_346365.2	ILMN_1370218	0001780671	S	50	GTGCGTATTGGTGGGAAAGGAAGTGCTCAGGTGGTTTACAAAGCAAGGAA				Xq36	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (LOC367946), mRNA.					
Rattus norvegicus	RefSeq	GI_57526975-S	ILMN_292155	LPXN	NM_001009649.1	NM_001009649.1		293783	57526975	NM_001009649.1	Lpxn	NP_001009649.1	ILMN_1372207	0001780438	S	1145	GCCTGACACAGCTGCCCAAAGGCATCTTCAAGGAGCAGAACAACAAGACC	1	+	215919696-215919745	1q43	Rattus norvegicus leupaxin (Lpxn), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108942	MGC108942
Rattus norvegicus	RefSeq	GI_62643777-S	ILMN_64436	MUC1	XM_342281.3	XM_342281.3		24571	109465081	XM_342281.3	Muc1	XP_342282.3	ILMN_1351119	0006100343	S	2003	CGGCCAACTTGTAGGAGCAAGTCACCCTACCCACTCGGGCAGTGGCAGTT	2	+	181403347-181403360:181403361-181403396	2q34	PREDICTED: Rattus norvegicus mucin 1, transmembrane (Muc1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_56605695-S	ILMN_287589	RGD1311257	NM_001008307.1	NM_001008307.1		294333	56605695	NM_001008307.1	RGD1311257	NP_001008308.1	ILMN_1360062	0001050333	S	1395	TTATGGTACTGCTTACCCCCAAAGGTGCTCCCTAGCCTTTTACAGGGGCC	20	+	11536606-11536655	20p12	Rattus norvegicus similar to C21orf70 protein (RGD1311257), mRNA.				MGC94567	MGC94567
Rattus norvegicus	RefSeq	GI_62642936-S	ILMN_68793	ITGA2	XM_345156.3	XM_345156.3		170921	109464403	XM_345156.3	Itga2	XP_345157.3	ILMN_1349655	0002450402	S	3581	GCTGGAATCCTTTTGCTGTTGGCTATGGTTGCAGGCTTGTGGAAGCTCGG	2	-	46967770-46967775:46968693-46968736	2q14	PREDICTED: Rattus norvegicus integrin, alpha 2 (Itga2), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence TAS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IMP]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A homeostatic process involved in the maintenance of an internal equilibrium within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function [goid 1894] [evidence IMP]; Any process involved in the controlled movement of a cell [goid 6928] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence TAS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence IMP]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_22129756-S	ILMN_265591	LOC257650	NM_147142.1	NM_147142.1		257650	22129756	NM_147142.1	LOC257650	NP_671483.1	ILMN_1355233	0000110280	S	1603	CACCGTTCTCCACAGATGAATTTGTAGCCCGCGTCCTAGGGGTTGGGTGG	10	+	87053712-87053761	10q31	Rattus norvegicus hippyragranin (LOC257650), mRNA.				Hgn	Hgn
Rattus norvegicus	RefSeq	GI_62654154-S	ILMN_65945	LOC501039	XM_576451.1	XM_576451.1		501039	62654154	XM_576451.1	LOC501039	XP_576451.1	ILMN_1350314	0001660452	S	1382	GGGACAGAATGGAAAGAAGGGAATCTGGGTGCCAGGAGCAGAGTGGAGCC				8q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330005L02 (LOC501039), mRNA.					
Rattus norvegicus	RefSeq	GI_62078918-S	ILMN_298955	PARP16	NM_001014093.1	NM_001014093.1		315760	62078918	NM_001014093.1	Parp16	NP_001014115.1	ILMN_1365164	0004120064	S	2056	ACAGGCCGAGCCTCTGTCCAAGGAGCCTGAGCTTGAGTTGAAAGCAGAGC	8	+	69477251-69477300	8q24	Rattus norvegicus poly (ADP-ribose) polymerase family, member 16 (Parp16), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IEA]	LRRGT00109; RGD1306243	LRRGT00109; RGD1306243
Rattus norvegicus	RefSeq	GI_62644288-S	ILMN_68444	LOC365928	XM_345286.2	XM_345286.2		365928	62644288	XM_345286.2	LOC365928	XP_345287.2	ILMN_1370351	0002340687	S	420	GGGTCCAAGAAATCCAGTCTGAAGGCCGAGACAACAGCTCCCTGCGCCAT				2q42	PREDICTED: Rattus norvegicus similar to elongin B isoform b (LOC365928), mRNA.					
Rattus norvegicus	RefSeq	GI_31343466-S	ILMN_268930	CRYL1	NM_175757.2	NM_175757.2		290277	31343466	NM_175757.2	Cryl1	NP_786933.1	ILMN_1365959	0006130114	S	969	GGACGACTGTCTCATGCAACTCTCCAAACTGAAGCACCAGATGCAGCCCC	15	-	36320472-36320521	15p12	Rattus norvegicus crystallin, lambda 1 (Cryl1), mRNA.		The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663867-S	ILMN_50654	RGD1559783_PREDICTED	XM_577595.2	XM_577595.2		502143	109505151	XM_577595.2	RGD1559783_predicted	XP_577595.2	ILMN_1360814	0003390020	S	505	CCCAGGGAAGTGAGAAGCTACAGCTATATGAGCCAGGAGGATGTGCAGGA	17	-	72124632-72124681	17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (predicted) (RGD1559783_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090346-S	ILMN_293312	MNS1	NM_001007752.1	NM_001007752.1		363093	56090346	NM_001007752.1	Mns1	NP_001007753.1	ILMN_1361728	0004810672	S	1307	GAATGCCCAGAAACAACGGATGAAGCAGCTGGAACACAAACGAGCTGTGG	8	+	77030154-77030203	8q24	Rattus norvegicus meiosis-specific nuclear structural 1 (Mns1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]		MGC94906	MGC94906
Rattus norvegicus	RefSeq	GI_62641397	ILMN_288376	LOC499276	XM_001053146.1	XM_001053146.1		499276	109463012	XM_001053146.1	LOC499276	XP_001053146.1	ILMN_1650356	0002650484	S	698	CCCCAGGAACAGACAAGTCCAGTAAGGAGGGAGAGAGTGATGACAGGGAT				1q37	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700022C21 (LOC499276), mRNA.					
Rattus norvegicus	RefSeq	GI_56961644-S	ILMN_292810	FCN1	NM_031348.2	NM_031348.2		83517	56961644	NM_031348.2	Fcn1	NP_112638.2	ILMN_1349211	0003360288	S	905	ATGATACGAATGGCGGGAAGAACTGTGCAGCTTTGTTCCACGGAGCCTGG	3	-	3798221-3798270	3p13	Rattus norvegicus ficolin (collagen/fibrinogen domain containing) 1 (Fcn1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	MGC108660	MGC108660
Rattus norvegicus	RefSeq	GI_21955175-S	ILMN_292742	PRRXL1	NM_145767.1	NM_145767.1		252880	21955175	NM_145767.1	Prrxl1	NP_665710.1	ILMN_1359952	0006520603	S	2065	TGCCGCAGTTTAGCGTGGCTGTGTTCTTTCACGCGATGGTGACTTCGGAG	16	+	8140213-8140262	16p16	Rattus norvegicus paired related homeobox protein-like 1 (Prrxl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The series of events in which a chemical stimulus is received by a cell and converted into a molecular signal [goid 9593] [evidence ISS]; The series of events in which a chemical stimulus is received by a cell and converted into a molecular signal [goid 9593] [evidence IEA]; The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal [goid 16048] [evidence ISS]; The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal [goid 16048] [evidence IEA]; The process whose specific outcome is the progression of the dorsal region of the spinal cord over time, from its formation to the mature structure. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input [goid 21516] [evidence ISS]; The process whose specific outcome is the progression of the trigeminal nerve over time, from its formation to the mature structure. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae [goid 21559] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50954] [evidence ISS]; The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50954] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Drg11	Drg11
Rattus norvegicus	RefSeq	GI_54019425-S	ILMN_296533	IL5	NM_021834.1	NM_021834.1		24497	54019425	NM_021834.1	Il5	NP_068606.1	ILMN_1364743	0001190142	S	198	TCAGGGGCTAGACATACTGAAGAATCAAACTGTCCGAGGGGGCACTGTGG	10	+	39180377-39180426	10q22	Rattus norvegicus interleukin 5 (Il5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IMP]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-5 receptor [goid 5137] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661644-S	ILMN_53774	LOC305974	XM_224299.3	XM_224299.3		305974	62661644	XM_224299.3	LOC305974	XP_224299.3	ILMN_1357006	0000110735	S	1760	GGGACGGGTGTCCAGGGAAGGGTAGTAATAATGGTTCTCCCAGCAGGTGA				15p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933425F03 (predicted) (LOC305974), mRNA.					
Rattus norvegicus	RefSeq	GI_57528025-S	ILMN_269452	CCL22	NM_057203.1	NM_057203.1		117551	57528025	NM_057203.1	Ccl22	NP_476551.1	ILMN_1373049	0002630048	S	1487	GAGTGACTGGATTGCGTGAGCCTGAGGACATTGCTTTTCCCCTCGGAGCC	19	-	10697532-10697581	19p12	Rattus norvegicus chemokine (C-C motif) ligand 22 (Ccl22), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEP]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IDA]	Scya22; MGC108943; Mdc	Scya22; MGC108943; Mdc
Rattus norvegicus	RefSeq	GI_23463274-S	ILMN_64271	STK6	NM_153296.1	NM_153296.1		261730	23463274	NM_153296.1	Stk6	NP_695208.1	ILMN_1363543	0001400364	S	864	CAGCCCCCGGAGATGATTGAAGGTCGGATGCATGACGAGAAGGTGGACCT				3q42	Rattus norvegicus serine/threonine kinase 6 (Stk6), mRNA.				MGC124935	MGC124935
Rattus norvegicus	RefSeq	GI_62658580-S	ILMN_285675	RGD1306932	NM_001024996.1	NM_001024996.1		304346	68163434	NM_001024996.1	RGD1306932	NP_001020167.1	ILMN_1356068	0003840324	S	1163	TCAGGTTGTCAGACTTGGCGGCAGGGAACTTTACCCGCTGAGCCTTCCTG	12	+	17637635-17637684	12q11	Rattus norvegicus similar to CG9117-PA (RGD1306932), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665882	ILMN_276101	LOC690407	XM_001071587.1	XM_001071587.1		690407	109509351	XM_001071587.1	LOC690407	XP_001071587.1	ILMN_1651051	0002470402	S	1158	TGTGTCTCCAGAGCCCAGCCATTTCTCTTTAGCCGGTCAGCAGCCACTGG	20	-	14111978-14112027	20p12	PREDICTED: Rattus norvegicus similar to RAB36, member RAS oncogene family, transcript variant 2 (LOC690407), mRNA.					
Rattus norvegicus	RefSeq	GI_34871750-S	ILMN_66986	LOC363901	XM_344098.1	XM_344098.1		363901	34871750	XM_344098.1	LOC363901	XP_344099.1	ILMN_1357285	0002690750	S	11	TTTCCTGAGCAGCCCCTGGATCGGAACACCTGGAGCAGGCACAAAACCAG					PREDICTED: Rattus norvegicus similar to Ribosomal protein S11 (LOC363901), mRNA.					
Rattus norvegicus	RefSeq	GI_62653056-S	ILMN_54819	LOC315297	XM_235649.3	XM_235649.3		315297	62653056	XM_235649.3	LOC315297	XP_235649.3	ILMN_1351541	0003940279	S	5064	CCATGGGGCTGATTTTGGAAGCCCCAGGCTTACGGAGTTTGGGGAGTGAG				7q36	PREDICTED: Rattus norvegicus hypothetical LOC315297 (LOC315297), mRNA.					
Rattus norvegicus	RefSeq	GI_62643326-S	ILMN_65405	TTC14_PREDICTED	XM_227030.4	XM_227030.4		310314	109464680	XM_227030.4	Ttc14_predicted	XP_227030.4	ILMN_1364882	0001850008	S	2243	GCACATGATAAGGAGGACGGCTGTGGGGAGGGTAACAAAGCTGAGGCTCC	2	+	120114399-120114448	2q25	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 14 (predicted) (Ttc14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658630-S	ILMN_60458	LOC498168	XM_573383.1	XM_573383.1		498168	62658630	XM_573383.1	LOC498168	XP_573383.1	ILMN_1354500	0005700017	S	2116	GCTGTCGGCGGCATGTCTGCACACTGCTCTCGATACTACCATGCGGAGCC					PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (LOC498168), mRNA.					
Rattus norvegicus	RefSeq	GI_34881969-S	ILMN_68284	LOC301878	XM_229360.2	XM_229360.2		301878	34881969	XM_229360.2	LOC301878	XP_229360.2	ILMN_1367584	0006020136	S	553	GCGAGATCTTAACAGGTCAATGTGTGCAGTACACCAGAAGTTACGGGTCC					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC301878), mRNA.					
Rattus norvegicus	RefSeq	GI_62652130-S	ILMN_53573	LOC362881	XM_343209.2	XM_343209.2		362881	62652130	XM_343209.2	LOC362881	XP_343210.1	ILMN_1359554	0000630164	S	497	CAGAGCATGGCAAACAAGTTAGGTCAAAGGTCACCCTGCTGTAGTTCCCC				7q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9530003J23 (predicted) (LOC362881), mRNA.					
Rattus norvegicus	RefSeq	GI_62662659-S	ILMN_50827	IRF2_PREDICTED	XM_214350.4	XM_214350.4		290749	109503382	XM_214350.4	Irf2_predicted	XP_214350.3	ILMN_1374809	0003610685	S	1289	CTCAAGTTCAAGGACCAACAGCCACACAGGCAGTGGAGGTGCTGCATTGC	16	-	48672844-48672893	16q11	PREDICTED: Rattus norvegicus interferon regulatory factor 2 (predicted) (Irf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576914-S	ILMN_266770	OLR237	NM_001000210.1	NM_001000210.1		293382	47576914	NM_001000210.1	Olr237	NP_001000210.1	ILMN_1366836	0004570494	S	786	TGCAATGCCTAAGTCTAGTTACTCCACAGACCAGAACAAGGTGGTGTCTG	1	-	165246835-165246884	1q33	Rattus norvegicus olfactory receptor 237 (Olr237), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr237; ratchr1-165358333-165357389_ORF	Olr237; ratchr1-165358333-165357389_ORF
Rattus norvegicus	RefSeq	GI_62666955-S	ILMN_265913	RGD1561658_PREDICTED	XR_008521.1	XR_008521.1		367844	109512039	XR_008521.1	RGD1561658_predicted		ILMN_1351621	0005860739	S	614	CTCCGCATCAGCTCATGCTGTCAAAGCTATGGGCAAGGTCAACCCAGAGC				Xq31	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1561658_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641050-S	ILMN_274733	RHOG	NM_001037195.1	NM_001037195.1		308875	82524299	NM_001037195.1	Rhog	NP_001032272.1	ILMN_1364060	0001990685	S	1073	AGGGAGGAGCCACAGAATCCTCAGAAGAAAAATGTGCCCTAACCTGCCCC	1	-	159724116-159724165	1q32	Rattus norvegicus ras homolog gene family, member G (rho G) (Rhog), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC125105; Arhg	MGC125105; Arhg
Rattus norvegicus	RefSeq	GI_62652078-S	ILMN_50993	RGD1310270_PREDICTED	XM_235153.4	XM_235153.4		314798	109480492	XM_235153.4	RGD1310270_predicted	XP_235153.4	ILMN_1369151	0006840563	S	1722	CCTCGTGAAGCTGTTTGACCCTGTGCAGTCCCCCAGATGCTACGCTGTCA	7	-	44415751-44415800	7q21	PREDICTED: Rattus norvegicus similar to CG33154-PB (predicted) (RGD1310270_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18543338-S	ILMN_280085	SNURF	NM_130738.1	NM_130738.1		113938	18543338	NM_130738.1	Snurf	NP_570094.1	ILMN_1367214	0002570017	S	8	GCCAGACGGTTGGTTCTGAGGAGAGATTTTGCAACGCAATGGAGCGAGGA	1	-	111592796-111592808:111592809-111592845	1q22	Rattus norvegicus SNRPN upstream reading frame (Snurf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62658340-S	ILMN_65957	LOC501790	XM_577199.1	XM_577199.1		501790	62658340	XM_577199.1	LOC501790	XP_577199.1	ILMN_1350451	0004150204	S	257	GGAGTGGCTGATTTGGCATTCTTGTACCGAAAGGAAGAAGTTAAAATCTG					PREDICTED: Rattus norvegicus similar to chromobox homolog 3 (LOC501790), mRNA.					
Rattus norvegicus	RefSeq	GI_47577832-S	ILMN_299894	OLR1204	NM_001000437.1	NM_001000437.1		300529	47577832	NM_001000437.1	Olr1204	NP_001000437.1	ILMN_1362481	0003360195	S	558	TGCTCTTCTAAAGCTCTCCTGCACAAGCACTTCCATCAATGAGCTGGTGG	8	+	39386011-39386060	8q21	Rattus norvegicus olfactory receptor 1204 (Olr1204), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1204; ratchr8-39394220-39395164_ORF	Olr1204; ratchr8-39394220-39395164_ORF
Rattus norvegicus	RefSeq	GI_19173761-S	ILMN_67554	NAP1L3	NM_133402.2	NM_133402.2		170914	75832141	NM_133402.2	Nap1l3	NP_596893.1	ILMN_1367838	0004150671	S	1705	CAGGAGTCGCCCAGCTATTACAGGGGAAATTGAAGTCCAGCCAAGAGTGG	X	-	112245565-112245614	Xq32	Rattus norvegicus nucleosome assembly protein 1-like 3 (Nap1l3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]		MGC124570	MGC124570
Rattus norvegicus	RefSeq	GI_62654472-S	ILMN_58683	LOC501070	XM_576483.1	XM_576483.1		501070	62654472	XM_576483.1	LOC501070	XP_576483.1	ILMN_1350065	0001240707	S	2361	GCACGGTAAGGATATGCACTCACGGGCACGCCGTTGCTAGTCTCCTCTGC				8q32	PREDICTED: Rattus norvegicus similar to deleted in lung and esophageal cancer 1 isoform DLEC1-N1 (LOC501070), mRNA.					
Rattus norvegicus	RefSeq	GI_62658285-S	ILMN_270084	LOC363849	XM_344057.2	XM_344057.2		363849	62658285	XM_344057.2	LOC363849	XP_344058.2	ILMN_1372178	0006380180	S	4123	GCCATTTGTGAGAGCACGAGCCTGGGATCGTTAGGGATGATGCAGTCTGC	11|NW_047364.1	-	78541-78590		PREDICTED: Rattus norvegicus similar to histone cell cycle regulation defective homolog A isoform 1 (LOC363849), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643456-S	ILMN_265493	RGD1564472_PREDICTED	XM_001058314.1	XM_001058314.1		295047	109466670	XM_001058314.1	RGD1564472_predicted	XP_001058314.1	ILMN_1362362	0002260091	S	1510	TTCAAGCGCTCCTTGCGGGGCCTCACCTCCCAGTACCTCAACCGGATAAT				2q26	PREDICTED: Rattus norvegicus similar to Transcription elongation factor B polypeptide 3 binding protein 1 (predicted) (RGD1564472_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667114-S	ILMN_67195	LOC302378	XM_228501.3	XM_228501.3		302378	62667114	XM_228501.3	LOC302378	XP_228501.2	ILMN_1372431	0000110253	S	2583	GGAGCACATTGTAGCCAAGGTGCTGCTAAATTTGTGCTCGGGTTGGGAGC				Xq31	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 23 (LOC302378), mRNA.					
Rattus norvegicus	RefSeq	GI_62659484-S	ILMN_263761	ARPC5	NM_001025717.1	NM_001025717.1		360854	71043637	NM_001025717.1	Arpc5	NP_001020888.1	ILMN_1373122	0000580524	S	1547	AGTTCTGAAACCAACCACCCGAATGCCTGTGGCCAAGAGGGAAGCAGCCC	13	+	67764057-67764106	13q21	Rattus norvegicus actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116419	MGC116419
Rattus norvegicus	RefSeq	GI_62652007-S	ILMN_282819	RGD1565556_PREDICTED	XM_001076955.1	XM_001076955.1		314721	109481753	XM_001076955.1	RGD1565556_predicted	XP_001076955.1	ILMN_1352130	0004150075	S	3244	CAGGACGCTTGCGCAAAGATGCGGGCTAACTGTCAGAAGTCTACGGAGCA				7q13	PREDICTED: Rattus norvegicus similar to cajalin 2 isoform a (predicted) (RGD1565556_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718630-S	ILMN_50096	LOC503388	XM_578925.2	XM_578925.2		503388	109513804	XM_578925.2	LOC503388	XP_578925.2	ILMN_1353546	0001340593	S	192	GGCAGTGCTGGAAAAGTGGCAGAATTCCCAGAGCATCAAAGTCATCCTGC	Un|NW_047932.1	+	75448-75497		PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 variant 1 (LOC503388), mRNA.		The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18426857-S	ILMN_276502	SDHA	NM_130428.1	NM_130428.1		157074	18426857	NM_130428.1	Sdha	NP_569112.1	ILMN_1357678	0002640286	S	1852	GCCAGCAGAAGAAGCCATTTGCGGAACACTGGAGGAAGCACACCCTCTCA	1	+	29763255-29763304	1p11	Rattus norvegicus succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (Sdha), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor. No reaction with quinols [goid 104] [evidence ISS]; Catalysis of the reaction: succinate + quinone = fumarate + quinol [goid 8177] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor [goid 16627] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981189-S	ILMN_279499	MC5R	NM_013182.1	NM_013182.1		25726	6981189	NM_013182.1	Mc5r	NP_037314.1	ILMN_1358958	0000060735	S	1508	GATGCATAACCTCCTGGGTGAGTTGTCATTGAAAGAAACCGCGTGGCGGC	18	-	64679072-64679121	18q12.1	Rattus norvegicus melanocortin 5 receptor (Mc5r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IDA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IMP]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IDA]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_47577874-S	ILMN_292987	OLR1174	NM_001001016.1	NM_001001016.1		405390	47577874	NM_001001016.1	Olr1174	NP_001001016.1	ILMN_1356780	0006220021	S	384	CCCCCTTAAATACACTATTATCATGAACCCTAGGGTGTGTACCCTTCTGG	8	+	18725064-18725113	8q13	Rattus norvegicus olfactory receptor 1174 (Olr1174), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1174	Olr1174
Rattus norvegicus	RefSeq	GI_62638762-S	ILMN_65397	LOC502275	XM_577736.1	XM_577736.1		502275	62638762	XM_577736.1	LOC502275	XP_577736.1	ILMN_1351335	0004200066	S	972	CAAGTTGTTGCAGGGGTACCAACAGCCAGCGAGGTGATGAAACACGCCTG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502275), mRNA.					
Rattus norvegicus	RefSeq	GI_57012343-S	ILMN_282920	RT1-HA	NM_001008848.1	NM_001008848.1		24986	57012343	NM_001008848.1	RT1-Ha	NP_001008848.1	ILMN_1364893	0005550068	S	760	CCATAACCCTCGGACCCAGGAACCCCTGTGAGTAACTGTGGAGGTAGGGA	20	-	4902462-4902481:4902482-4902511	20p12	Rattus norvegicus RT1 class II, locus Ha (RT1-Ha), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		MGC116352; RT1.Ha	MGC116352; RT1.Ha
Rattus norvegicus	RefSeq	GI_62645969-S	ILMN_61870	LOC296207	XM_238286.3	XM_238286.3		296207	62645969	XM_238286.3	LOC296207	XP_238286.2	ILMN_1355085	0000610315	S	928	GACTCTAGTTCCAGGGGATCTGATGTCTTTGACCCTAGTGGGCACCTGCC				3q41	PREDICTED: Rattus norvegicus hypothetical LOC296207 (LOC296207), mRNA.					
Rattus norvegicus	RefSeq	GI_62658352-S	ILMN_66714	RGD1566084_PREDICTED	XM_577204.2	XM_577204.2		501795	109494942	XM_577204.2	RGD1566084_predicted	XP_577204.2	ILMN_1370259	0002640047	S	3050	CGCGTGCCAGCATCACTTCAGTCACCAGCTTCTCCCCAGATGATGTAGCC	12	+	1583492-1583541	12p12	PREDICTED: Rattus norvegicus similar to Hypothetical protein LOC73072 (predicted) (RGD1566084_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34870871-S	ILMN_282368	CCDC23	NM_001038994.2	NM_001038994.2		362578	84872222	NM_001038994.2	Ccdc23	NP_001034083.1	ILMN_1353529	0003800181	S	489	TGTTTCGCCGCTGCCGCCGAGCTGGCCCATTGGAGCCTTACAGAACTGAT	5	+	139788094-139788143	5q36	Rattus norvegicus coiled-coil domain containing 23 (Ccdc23), transcript variant 1, mRNA.				MGC116404; RGD1311232	MGC116404; RGD1311232
Rattus norvegicus	RefSeq	GI_62650776-S	ILMN_53929	RGD1559639_PREDICTED	XM_345686.3	XM_345686.3		366656	109478310	XM_345686.3	RGD1559639_predicted	XP_345687.1	ILMN_1362206	0005910066	S	518	TGTGTCTGGCTGTTGCGGTCGGCCACGTGAAGATGACCGATGACAAGCTA	6	-	91467489-91467538	6q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (predicted) (RGD1559639_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649493	ILMN_283438	DPH2	NM_001015007.1	NM_001015007.1		298452	62543508	NM_001015007.1	Dph2	NP_001015007.1	ILMN_1650825	0004280685	S	1474	CCGCTTGGGCCAGACACCAGTGAAAGAAGCTGTCCAAGGGAGACGAGGTA	5	-	138355233-138355282	5q36	Rattus norvegicus DPH2 homolog (S. cerevisiae) (Dph2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109459; Dph2l2	MGC109459; Dph2l2
Rattus norvegicus	RefSeq	GI_40018583-S	ILMN_284942	ZFYVE27	NM_199104.1	NM_199104.1		309376	40018583	NM_199104.1	Zfyve27	NP_954535.1	ILMN_1368807	0005080692	S	2347	TGGGATGAAAACGATGAGGGGCTTCTGCCTGCGACCCTTCTGTAGCCATG	1	-	248663341-248663390	1q54	Rattus norvegicus zinc finger, FYVE domain containing 27 (Zfyve27), mRNA.			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC72597	MGC72597
Rattus norvegicus	RefSeq	GI_62659536-S	ILMN_55481	XPR1_PREDICTED	XM_223117.3	XM_223117.3		289424	62659536	XM_223117.3	Xpr1_predicted	XP_223117.3	ILMN_1357833	0005050044	S	2592	TCAGGATGAAGAACAAGCATTGGAAGGAGCCTCTGACGCACAGCGTGGGG				13q21	PREDICTED: Rattus norvegicus xenotropic and polytropic retrovirus receptor 1 (predicted) (Xpr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662657-S	ILMN_50735	LOC498632	XM_579841.1	XM_579841.1		498632	62662657	XM_579841.1	LOC498632	XP_579841.1	ILMN_1356872	0005130402	S	542	GATGGGCAACGATGGGGATCTGAGGGGTTGGTTGAGCTTGAAGGACAGAA					PREDICTED: Rattus norvegicus LOC498632 (LOC498632), mRNA.					
Rattus norvegicus	RefSeq	GI_62656344-S	ILMN_268814	SLC16A11_PREDICTED	XM_001079593.1	XM_001079593.1		287450	109491141	XM_001079593.1	Slc16a11_predicted	XP_001079593.1	ILMN_1363682	0004760121	S	1254	GGCCCTCCTCTGTCAGGCTTCCTAAGGGATAAGACAGGAGACTTCAGTGC				10q24	PREDICTED: Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 11 (predicted) (Slc16a11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742768-S	ILMN_292738	SLC18A1	NM_013152.1	NM_013152.1		25693	25742768	NM_013152.1	Slc18a1	NP_037284.1	ILMN_1373664	0000060048	S	2090	GGCAGGACTGAACAATGTGCGTGCGAAATCAGGGGGACAAATGACAAGCC	16	+	22389548-22389597	16p14	Rattus norvegicus solute carrier family 18 (vesicular monoamine), member 1 (Slc18a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells [goid 15893] [evidence IEA]	Enables the directed movement of a drug into, out of, within or between cells. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 15238] [evidence IEA]	CGAT	CGAT
Rattus norvegicus	RefSeq	GI_20128769-S	ILMN_54507	UGT1A7	NM_130407.1	NM_130407.1		154516	20128769	NM_130407.1	Ugt1a7	NP_569091.1	ILMN_1375198	0004050609	S	1367	TGTCCTGGAAATGACTGCCGATGATGAGCCTCTGGACCTGGCTGTGTTCT				9q35	Rattus norvegicus UDP glycosyltransferase 1 family, polypeptide A7 (Ugt1a7), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]		UGT1	UGT1
Rattus norvegicus	RefSeq	GI_62646565	ILMN_69067	LOC246270	XM_575306.1	XM_575306.1		246270	62646565	XM_575306.1	LOC246270	XP_575306.1	ILMN_1650642	0006200707	S	1267	GATGTGCAGAGGCATTACCTTGGGGTTTTCCACCAGGCCTCTTTGTTCCC					PREDICTED: Rattus norvegicus estrous-specific protein, 250 kDa (LOC246270), mRNA.					
Rattus norvegicus	RefSeq	GI_62644878-S	ILMN_282137	RGD1564535_PREDICTED	XM_001077413.1	XM_001077413.1		366004	109469534	XM_001077413.1	RGD1564535_predicted	XP_001077413.1	ILMN_1370568	0006130398	S	222	TATGCCCCGTGGAGGGGTGACCATGTTGGACTTGGACCTGGCTGCCTTCT				3p13	PREDICTED: Rattus norvegicus similar to RiNg Finger protein (rnf-1) (predicted) (RGD1564535_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659725-S	ILMN_282212	PPOX_PREDICTED	XM_001054597.1	XM_001054597.1		289219	109499028	XM_001054597.1	Ppox_predicted	XP_001054597.1	ILMN_1375006	0003120047	S	1666	CTATGAGGGGGTAGCTGTCAATGACTGTATAGAGAGTGGGCGCCAGGCAG				13q24	PREDICTED: Rattus norvegicus protoporphyrinogen oxidase (predicted) (Ppox_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665130-S	ILMN_56068	LOC498939	XM_574224.1	XM_574224.1		498939	62665130	XM_574224.1	LOC498939	XP_574224.1	ILMN_1370336	0002480397	S	121	CCTTACTCAGCCACATCACCAGAGCCTTCACCAGAGGTGTCCATACCGTG				19q11	PREDICTED: Rattus norvegicus similar to H3 histone, family 3A (LOC498939), mRNA.					
Rattus norvegicus	RefSeq	GI_62638656-S	ILMN_60413	LOC499049	XM_579914.1	XM_579914.1		499049	62638656	XM_579914.1	LOC499049	XP_579914.1	ILMN_1372518	0006380504	S	1053	GAGCCAGGTTAGCTAACTGCAGTTGGTCTCCATGTGGGTCATCTGACAAA					PREDICTED: Rattus norvegicus LOC499049 (LOC499049), mRNA.					
Rattus norvegicus	RefSeq	GI_62648291-S	ILMN_282797	EPS8_PREDICTED	XM_001072957.1	XM_001072957.1		312812	109474428	XM_001072957.1	Eps8_predicted	XP_001072957.1	ILMN_1352139	0002650082	S	2684	ACAGCAGCGGAAGCTCTGAGTTACAAGAAATCATGCGGAGAAGGCAGGAG				4q44	PREDICTED: Rattus norvegicus epidermal growth factor receptor pathway substrate 8 (predicted) (Eps8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657114-S	ILMN_66342	LOC501723	XM_580228.1	XM_580228.1		501723	62657114	XM_580228.1	LOC501723	XP_580228.1	ILMN_1361600	0001990731	S	1092	CCTACACCCAGAAAAGGCATTCCACAGACCTCTGACACCATGCAGTGTTG					PREDICTED: Rattus norvegicus LOC501723 (LOC501723), mRNA.					
Rattus norvegicus	RefSeq	GI_62664961-S	ILMN_277909	NETO2_PREDICTED	XM_001068307.1	XM_001068307.1		307757	109508529	XM_001068307.1	Neto2_predicted	XP_001068307.1	ILMN_1365424	0002690731	S	1384	GAAGAACTTGACAACTACCAGAAGCTGCGACGCTCCTCCACGGCCTCTCG				19q11	PREDICTED: Rattus norvegicus neuropilin (NRP) and tolloid (TLL)-like 2 (predicted) (Neto2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662702-S	ILMN_53680	MTMR7_PREDICTED	XM_240417.4	XM_240417.4		306490	109503379	XM_240417.4	Mtmr7_predicted	XP_240417.3	ILMN_1359365	0000070278	S	2319	ACAAGGCTTCCCTGGCACAGCAGCATGTCTCTGCTTCTAAAGCCCTCCTC	16	+	55072965-55073014	16q12.1	PREDICTED: Rattus norvegicus myotubularin related protein 7 (predicted) (Mtmr7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663052-S	ILMN_47859	LOC498674	XM_579847.1	XM_579847.1		498674	62663052	XM_579847.1	LOC498674	XP_579847.1	ILMN_1368776	0003360520	S	1119	CTGCGGAAGACAGCAGAGTTCCTGAGCCCCATGGTGTACGGTGCCTACTT					PREDICTED: Rattus norvegicus LOC498674 (LOC498674), mRNA.					
Rattus norvegicus	RefSeq	GI_62642475-S	ILMN_296336	SORCS1_PREDICTED	XM_001070775.1	XM_001070775.1		309533	109464087	XM_001070775.1	Sorcs1_predicted	XP_001070775.1	ILMN_1362303	0004760110	S	3456	AGACCAAGACAAGCCACACCACCTTCATCGCCAAAGCGGGGATCTGCTGG				1q55	PREDICTED: Rattus norvegicus VPS10 domain receptor protein SORCS 1 (predicted) (Sorcs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869075-S	ILMN_55486	LOC364250	XM_344294.3	XM_344294.3		364250	109501220	XM_344294.3	LOC364250	XP_344295.1	ILMN_2039165	0006580162	S	48	TTCACCAGCTGCTCAAGCTCCTTCAGAAGGAGGGGGGAGACCAAGGAGAG	15	+	5097932-5097981	15p16	PREDICTED: Rattus norvegicus similar to Spetex-2D protein (LOC364250), mRNA.					
Rattus norvegicus	RefSeq	GI_62643251-S	ILMN_277962	SPIN1	NM_001024796.1	NM_001024796.1		361217	67078425	NM_001024796.1	Spin1	NP_001019967.1	ILMN_1360891	0001410148	S	829	GCCCGATTCCAATGATTCGCCTCCAGCAGAAAGGGAGCCAGGAGAAGTTG	17	-	19950571-19950610:19955277-19955286	17p14	Rattus norvegicus spindlin 1 (Spin1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_47577636-S	ILMN_279451	OLR545	NM_001001053.1	NM_001001053.1		405941	47577636	NM_001001053.1	Olr545	NP_001001053.1	ILMN_2040169	0007650307	S	40	ACAAATATTACTATACCTATAGAATTTGTTCTCTTAGGATTTTCTGATAT	3	-	70648781-70648830	3q24	Rattus norvegicus olfactory receptor 545 (Olr545), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr545	Olr545
Rattus norvegicus	RefSeq	GI_57528241-S	ILMN_290516	RGD1310111	NM_001009643.1	NM_001009643.1		292875	57528241	NM_001009643.1	RGD1310111	NP_001009643.1	ILMN_1368407	0004850446	S	633	GCTCCCAGTCTAGGCTTTGATCGTGTCATTGGGGTGCTTGTGGCTGACCT	1	+	94944354-94944403	1q22	Rattus norvegicus similar to RIKEN cDNA 0610012D14 (RGD1310111), mRNA.		The chemical reactions and pathways resulting in the breakdown of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; catabolism may be of either the oxidized form, NADP, or the reduced form, NADPH [goid 6742] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base [goid 19363] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: L-aspartate + H2O + NAD(P)+ = oxaloacetate + NH3 + NAD(P)H + H+ [goid 33735] [evidence IEA]	MGC109059	MGC109059
Rattus norvegicus	RefSeq	GI_62659010-S	ILMN_60729	LOC304547	XM_222232.3	XM_222232.3		304547	62659010	XM_222232.3	LOC304547	XP_222232.3	ILMN_1364901	0003120707	S	1965	GGAGCAAGGGCTGTTGTGCTTATCGTGAGGGACCTGCTGACTAGGCTCTC				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC10854 (predicted) (LOC304547), mRNA.					
Rattus norvegicus	RefSeq	GI_33667086-S	ILMN_286605	STX1A	NM_053788.2	NM_053788.2		116470	33667086	NM_053788.2	Stx1a	NP_446240.2	ILMN_1350669	0006980092	S	1883	TGTACCCCCATGCCCCAGGACCCCTTTCTCATCCACAGGCAAGGAGTATG	12	-	22737310-22737359	12q12	Rattus norvegicus syntaxin 1A (brain) (Stx1a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; Any complex of actin, myosin, and accessory proteins [goid 42641] [evidence IDA]	Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence IMP]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence TAS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus [goid 9629] [evidence IDA]; The initial attachment of a synaptic vesicle membrane to the presynaptic membrane, mediated by proteins protruding from the membrane of the synaptic vesicle and the target membrane [goid 16081] [evidence IEP]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of exocytosis [goid 45921] [evidence IDA]	Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IEA]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence ISS]; Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IPI]; The inhibition of the passage of calcium ions through a calcium channel; the function of some venoms [goid 19855] [evidence IEA]; The inhibition of the passage of calcium ions through a calcium channel; the function of some venoms [goid 19855] [evidence ISS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IPI]; Interacting selectively with the head/neck region of a myosin heavy chain [goid 32028] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP [goid 43008] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_21426786-S	ILMN_55169	CANT1	NM_144754.2	NM_144754.2		246272	67514567	NM_144754.2	Cant1	NP_653355.1	ILMN_1358720	0006550095	S	1176	GGACAATGGCAGGATTGCCACCTATGTCATGGCCTTTACGCTGGACGGCC	10	-	108406800-108406849	10q32.3	Rattus norvegicus calcium activated nucleotidase 1 (Cant1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence IEA]	srapy	srapy
Rattus norvegicus	RefSeq	GI_51571948-S	ILMN_271959	GSPT1	NM_001003978.1	NM_001003978.1		24420	51571948	NM_001003978.1	Gspt1	NP_001003978.1	ILMN_1357291	0003440093	S	2267	GAGAGCTTGGCTATGCCAGTTTGACTTCCCCAAGAGTTTGCCCCACAAAC	10	+	4283555-4283604	10q11	Rattus norvegicus G1 to S phase transition 1 (Gspt1), mRNA.		The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IMP]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IPI]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Involved in catalyzing the release of a nascent polypeptide chain from a ribosome [goid 3747] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94063	MGC94063
Rattus norvegicus	RefSeq	GI_54020877-S	ILMN_279051	BIRC3	NM_023987.2	NM_023987.2		78971	54020877	NM_023987.2	Birc3	NP_076477.2	ILMN_1365233	0004150725	S	2058	GGTCCACGGTTGTGACCCCAGCCAGGAGGAGCAGAAGTTCAATGTCACTC	8	-	4682406-4682455	8q11	Rattus norvegicus baculoviral IAP repeat-containing 3 (Birc3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence NAS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Birc2; IAP1; MGC93416	Birc2; IAP1; MGC93416
Rattus norvegicus	RefSeq	GI_57164076-S	ILMN_262594	V1RE17	NM_001009509.1	NM_001009509.1		494228	57164076	NM_001009509.1	V1re17	NP_001009509.1	ILMN_1366635	0001400541	S	261	TCAACGATTTGGCAGGAGTGTGTCCATTGGTGCCACCTGCCTTCTGAGTG	1	+	63216948-63216997	1q12	Rattus norvegicus vomeronasal 1 receptor, E17 (V1re17), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640849-S	ILMN_294171	RGD1562781_PREDICTED	XR_007949.1	XR_007949.1		365284	109462132	XR_007949.1	RGD1562781_predicted		ILMN_1358632	0004670142	S	95	GTACCTCAGGCCACCCTTATAGCCACACCCTGGTGACTGGAATTGACTGC				1q31	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (predicted) (RGD1562781_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647465-S	ILMN_68118	IMMT_PREDICTED	XM_232055.3	XM_232055.3		312444	62647465	XM_232055.3	Immt_predicted	XP_232055.3	ILMN_1369795	0001170402	S	2574	GCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCC				4q33	PREDICTED: Rattus norvegicus inner membrane protein, mitochondrial (predicted) (Immt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648172-S	ILMN_266913	LOC500319	XM_001063758.1	XM_001063758.1		500319	109474237	XM_001063758.1	LOC500319	XP_001063758.1	ILMN_1369638	0004210411	S	1452	GAGGAGTACTGAGCGCATGGGTCTGGCTGGCAGCCGTCCATTTACGTCTT				4q42	PREDICTED: Rattus norvegicus similar to Tubulin alpha-3 chain (Alpha-tubulin 3) (LOC500319), mRNA.					
Rattus norvegicus	RefSeq	GI_16758855-S	ILMN_281093	SPAM1	NM_053967.1	NM_053967.1		117037	16758855	NM_053967.1	Spam1	NP_446419.1	ILMN_1358728	0002360600	S	1344	GGATGCTATGTCTTTAGCACAACGTTCGGCAGGTTGCCCAATCCTACGTC	4	+	51285829-51285852:51287947-51287972	4q22	Rattus norvegicus sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) (Spam1), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IEA]; A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The union of male and female gametes to form a zygote [goid 7338] [evidence ISS]; The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head [goid 7342] [evidence TAS]; The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head [goid 7342] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]	MGC93268	MGC93268
Rattus norvegicus	RefSeq	GI_13929105-S	ILMN_267817	SLC32A1	XM_001068818.1	XM_001068818.1		83612	109471221	XM_001068818.1	Slc32a1	XP_001068818.1	ILMN_1348972	0006550102	S	2367	AGGGAGGGGGAAAGGGAACACGCAGTTCGCAGGCTCGGAAACTTGACCTT				3q42	PREDICTED: Rattus norvegicus solute carrier family 32 (GABA vesicular transporter), member 1 (Slc32a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A synapse in which an action potential in the presynaptic cell reduces the probability of an action potential occurring in the postsynaptic cell [goid 60077] [evidence ISS]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence TAS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence TAS]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence IEA]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence ISS]	Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence TAS]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence IEA]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + H+(out) = gamma-aminobutyric acid(in) + H+(in) [goid 15495] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + H+(out) = gamma-aminobutyric acid(in) + H+(in) [goid 15495] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657211-S	ILMN_49210	MAP3K3_PREDICTED	XM_221034.4	XM_221034.4		303604	109489166	XM_221034.4	Map3k3_predicted	XP_221034.3	ILMN_1373959	0001050010	S	4020	CCAGGATGGCCTGGACCCAAAGGTTATGAAGGACAGTTTCCTAGCAGCCC	10	+	95550751-95550800	10q32.1	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase kinase 3 (predicted) (Map3k3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662872-S	ILMN_280314	VPS36_PREDICTED	XM_001064954.1	XM_001064954.1		290851	109504339	XM_001064954.1	Vps36_predicted	XP_001064954.1	ILMN_1369775	0007040079	S	1128	GATGGGCCACCTTTGCCGAGATGACTCTGTGGAAGGCTTGCGGTTTTATC				16q12.5	PREDICTED: Rattus norvegicus vacuolar protein sorting 36 (yeast) (predicted) (Vps36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19924066-S	ILMN_264733	NME7	NM_138532.1	NM_138532.1		171566	19924066	NM_138532.1	Nme7	NP_612541.1	ILMN_1357326	0002900044	S	1414	GCCGTACAGAGTAAAGACAACACAGACGGAGACGCTCAGACAAGTGAGTC	13	+	80214033-80214082	13q22-q23	Rattus norvegicus non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) (Nme7), mRNA.		The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Nm23-r7	Nm23-r7
Rattus norvegicus	RefSeq	GI_62654456-S	ILMN_57951	LOC316048	XM_236683.2	XM_236683.2		316048	62654456	XM_236683.2	LOC316048	XP_236683.2	ILMN_1360307	0002370270	S	0	ATGGAGGTTGTAATGGGCTTAATGGATGACGGAGCAGGCAAACAGGCCCC				8q32	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (LOC316048), mRNA.					
Rattus norvegicus	RefSeq	GI_47576678-S	ILMN_276342	OLR1701	NM_001001114.1	NM_001001114.1		406013	47576678	NM_001001114.1	Olr1701	NP_001001114.1	ILMN_1371317	0004010731	S	699	GATGCCTTCACCTGAGGGGCGCCACAAAGTACTTTCCACCTGTTCGTCTC	20	-	757235-757284	20p12	Rattus norvegicus olfactory receptor 1701 (Olr1701), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1701	Olr1701
Rattus norvegicus	RefSeq	GI_27730896-S	ILMN_284528	LOC690779	XM_001075592.1	XM_001075592.1		690779	109458010	XM_001075592.1	LOC690779	XP_001075592.1	ILMN_1360651	0006770075	S	465	GCCCAGTCATGTCAGCAGGTACCAGGTATGAATACCACTGGGCAGATGGC	1	-	62107398-62107447	1q12	PREDICTED: Rattus norvegicus similar to Mob4B protein (LOC690779), mRNA.					
Rattus norvegicus	RefSeq	GI_62647681-S	ILMN_284528	LOC690779	XM_001075592.1	XM_001075592.1		690779	109458010	XM_001075592.1	LOC690779	XP_001075592.1	ILMN_1353550	0005080204	S	982	CCATTGCGTCTGAAGAAAAAATTGTCCCAAAGGTAGGTTGGCCAGATAGC	1	-	62106881-62106930	1q12	PREDICTED: Rattus norvegicus similar to Mob4B protein (LOC690779), mRNA.					
Rattus norvegicus	RefSeq	GI_62654042-S	ILMN_289434	TTK_PREDICTED	XM_001062174.1	XM_001062174.1		315852	109485047	XM_001062174.1	Ttk_predicted	XP_001062174.1	ILMN_1374423	0000670440	S	2336	TCCCCGAGCTCCTCGCACATCCATATGTTCAGATTCAGCCCCATCCAGGC				8q31	PREDICTED: Rattus norvegicus Ttk protein kinase (predicted) (Ttk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25453417-S	ILMN_297972	PRB1	NM_172065.1	NM_172065.1		257651	25453417	NM_172065.1	Prb1	NP_742062.1	ILMN_1368943	0002940397	S	584	CACAGCAAAGAGCCCCTCAAGGACCACCCCCACAGGGAGGCCCTCAGAGA	4	-	169584015-169584064	4q42	Rattus norvegicus proline-rich protein BstNI subfamily 1 (Prb1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_11559961-S	ILMN_264748	ACACA	NM_022193.1	NM_022193.1		60581	11559961	NM_022193.1	Acaca	NP_071529.1	ILMN_1374107	0002260739	S	6722	GCCAGATCCAGGCCATGTTGAGACGCTGGTTTGTGGAAGTGGAAGGCACA	10	+	72669796-72669845	10q26	Rattus norvegicus acetyl-coenzyme A carboxylase alpha (Acaca), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis [goid 6084] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA [goid 3989] [evidence IEA]; Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA [goid 3989] [evidence ISS]; Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA [goid 3989] [evidence IMP]; Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA [goid 3989] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions [goid 9374] [evidence IMP]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA [goid 3989] [evidence IEA]; Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein [goid 4075] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions [goid 9374] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Acac	Acac
Rattus norvegicus	RefSeq	GI_62641554-S	ILMN_68872	LOC499281	XM_574581.1	XM_574581.1		499281	62641554	XM_574581.1	LOC499281	XP_574581.1	ILMN_1370916	0006380332	S	1202	AGTGGACCACATCCACAGTACCACAGGGCCCCGAGCCTCATGGTTGGGTT				1q41	PREDICTED: Rattus norvegicus similar to leucine rich repeat containing 27 (LOC499281), mRNA.					
Rattus norvegicus	RefSeq	GI_51948393-S	ILMN_273876	DDX56	NM_001004211.1	NM_001004211.1		289780	51948393	NM_001004211.1	Ddx56	NP_001004211.1	ILMN_1350639	0001690044	S	1725	CACAGCAAAGCCTTCTTGAGGTTGCCTGAGCCTGGGGACACTGAATTGGG	14	-	86986057-86986088:86986089-86986106	14q21	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 (Ddx56), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence TAS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence TAS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC93697; RH-II/Gu; Ddx21	MGC93697; RH-II/Gu; Ddx21
Rattus norvegicus	RefSeq	GI_62658197-S	ILMN_55389	RANBP1_PREDICTED	XM_341011.3	XM_341011.3		360739	109493578	XM_341011.3	Ranbp1_predicted	XP_341012.2	ILMN_1354512	0001850133	S	937	CCTCCAAGTTTTGACACCATTGAACATGACTTCAGAAATCCATTCCCCAG	11	+	84744490-84744539	11q23	PREDICTED: Rattus norvegicus RAN binding protein 1 (predicted) (Ranbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527918-S	ILMN_272560	GPD1	NM_022215.2	NM_022215.2		60666	57527918	NM_022215.2	Gpd1	NP_071551.2	ILMN_1353571	0003710347	S	2598	ATGAAGGTCAGAGCCATTGGGAAAGGTGAAGTGGGGGAGCCCTGTCATCG	7	+	138466039-138466088	7q36	Rattus norvegicus glycerol-3-phosphate dehydrogenase 1 (soluble) (Gpd1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate [goid 9331] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol [goid 6072] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD [goid 6116] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol [goid 46168] [evidence IEA]; The chemical reactions and pathways involving glycerolipids, any lipid with a glycerol backbone. Diacylglycerol and phosphatidate are key lipid intermediates of glycerolipid biosynthesis [goid 46486] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+ [goid 4367] [evidence IDA]; Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+ [goid 4367] [evidence TAS]; Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+ [goid 4367] [evidence IEA]; Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+ [goid 4367] [evidence ISS]; Catalysis of the reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor [goid 4368] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]	MGC93453; Gpd3; GPDH	MGC93453; Gpd3; GPDH
Rattus norvegicus	RefSeq	GI_13937374-S	ILMN_268575	IGF2	XM_001064965.1	XM_001064965.1		24483	109463269	XM_001064965.1	Igf2	XP_001064965.1	ILMN_1359301	0004780059	S	3657	CCCATGTCATCCAGCAGTGGCCCCGGGTATTTGCCCCAACTCAGTCCTTT				1q41	PREDICTED: Rattus norvegicus insulin-like growth factor 2 (Igf2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]	Interacting selectively with the insulin receptor [goid 5158] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence IEA]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_60223076-S	ILMN_302540	DGCR14	NM_001012472.1	NM_001012472.1		360741	60223076	NM_001012472.1	Dgcr14	NP_001012490.1	ILMN_1356035	0001580112	S	1452	GGCCTGGCTGGACTTGTGGATATTTTGTAGGACACTGTGGAGCGTCGAGG	11	+	85072705-85072754	11q23	Rattus norvegicus DiGeorge syndrome critical region gene 14 (Dgcr14), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]		MGC109131	MGC109131
Rattus norvegicus	RefSeq	GI_62641984-S	ILMN_68356	LOC502376	XM_577851.1	XM_577851.1		502376	62641984	XM_577851.1	LOC502376	XP_577851.1	ILMN_1355846	0001400451	S	147	GCGGTCAACAGCGGACTGTGGTCTAGGGAGAGGATAAGAATGGCTCCCAA				1q43	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC502376), mRNA.					
Rattus norvegicus	RefSeq	GI_62663405-S	ILMN_52742	LOC361229	XM_346949.2	XM_346949.2		361229	62663405	XM_346949.2	LOC361229	XP_346950.2	ILMN_1350270	0004540010	S	350	AAGCACGCTTAGTCCAGGTCCCTGCATGTCTGACAGGTTCCTTTGCTGGG					PREDICTED: Rattus norvegicus hypothetical LOC361229 (LOC361229), mRNA.					
Rattus norvegicus	RefSeq	GI_62654108-S	ILMN_63741	LOC367131	XM_345964.2	XM_345964.2		367131	62654108	XM_345964.2	LOC367131	XP_345965.2	ILMN_1353647	0000380088	S	614	CTCGCAGCTCGTGTTCGGACAGGCCACACCAGGCCAATATAGTTCCTTGT					PREDICTED: Rattus norvegicus similar to myosin IG (LOC367131), mRNA.					
Rattus norvegicus	RefSeq	GI_62657830-S	ILMN_56777	LOC497680	XM_579452.1	XM_579452.1		497680	62657830	XM_579452.1	LOC497680	XP_579452.1	ILMN_1366309	0001240129	S	4879	CCAGCCAGTTCCTAAACAACTCTAAAATGTGCTGCCCATAAGAAGGCCCG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022257 (LOC497680), mRNA.					
Rattus norvegicus	RefSeq	GI_62657693-S	ILMN_63144	IGSF4D_PREDICTED	XM_340958.2	XM_340958.2		360687	62657693	XM_340958.2	Igsf4d_predicted	XP_340959.2	ILMN_1351824	0003290368	S	1027	TTGTTATAGCCTCGGAAGCCCATCGCCAGGAGTCTTCTGCGCCAAGTCGC				11p12	PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 4 (predicted) (Igsf4d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664507-S	ILMN_268221	RGD1560471_PREDICTED	XM_001058158.1	XM_001058158.1		307398	109507372	XM_001058158.1	RGD1560471_predicted	XP_001058158.1	ILMN_1356033	0000380215	S	2018	GGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGATATG				18q12.1	PREDICTED: Rattus norvegicus similar to hypothetical protein 4933429F08 (predicted) (RGD1560471_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164150-S	ILMN_268299	RPS3	NM_001009239.1	NM_001009239.1		140654	57164150	NM_001009239.1	Rps3	NP_001009239.1	ILMN_1355413	0000060341	S	390	TATGGAAAGTGGGGCCAAGGGCTGTGAGGTTGTGGTCTCTGGGAAGCTCC	1	-	156812611-156812660	1q32	Rattus norvegicus ribosomal protein S3 (Rps3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IDA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of the plasma membrane surrounding a ruffle [goid 32587] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IC ]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB [goid 32088] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA repair [goid 45738] [evidence ISS]	Interacting selectively with damaged DNA [goid 3684] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA) [goid 3729] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IC ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate [goid 3906] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651220-S	ILMN_269885	BCL11B_PREDICTED	XM_001069879.1	XM_001069879.1		314423	109479931	XM_001069879.1	Bcl11b_predicted	XP_001069879.1	ILMN_1369608	0006380132	S	5713	CAGAAATGCCACAATGGCTGGGTGTATGTTGTTTTCCTTTGGTGACGGGA				6q32	PREDICTED: Rattus norvegicus B-cell leukemia/lymphoma 11B (predicted) (Bcl11b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641775-S	ILMN_280208	SYVN1	XM_001075008.1	XM_001075008.1		361712	109463411	XM_001075008.1	Syvn1	XP_001075008.1	ILMN_1351199	0006550082	S	3197	CCAGGAGGGGACCACGGAGCCAAGGCCTAGCTGCTGCTTTCTTTTGGTTT				1q43	PREDICTED: Rattus norvegicus synovial apoptosis inhibitor 1, synoviolin (Syvn1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978452-S	ILMN_289673	ADORA3	NM_012896.1	NM_012896.1		25370	6978452	NM_012896.1	Adora3	NP_037028.1	ILMN_1353305	0005900537	S	1671	GTGGGGCTGGATGTACAGAACCTGCGTTGAAGGATCCCTAGGATGTTGGG	2	+	201161333-201161382	2q34	Rattus norvegicus adenosine A3 receptor (Adora3), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine [goid 14061] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IEA]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IDA]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 1609] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254798-S	ILMN_283869	RAF1	NM_012639.2	NM_012639.2		24703	40254798	NM_012639.2	Raf1	NP_036771.1	ILMN_1369837	0005270152	S	2603	GGCCACCTGGGGGAGCCTGCTTTGGTACTACAGAACTTCACTTTGTGGAC	4	-	151752616-151752665	4q42	Rattus norvegicus v-raf-leukemia viral oncogene 1 (Raf1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IDA]; Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEP]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IEA]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IDA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IMP]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence TAS]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IDA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IMP]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IDA];  [goid 5057] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_19173805-A	ILMN_287777	HRG	NM_133428.1	NM_133428.1		171016	19173805	NM_133428.1	Hrg	NP_596919.1	ILMN_1376658	0006110017	S	1506	CAACAGACCCCCACAACCAGAGATTCGGCCCTTCCCTCAGACAGCCTCAA	11	-	80248722-80248771	11q23	Rattus norvegicus histidine-rich glycoprotein (Hrg), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS];  [goid 4869] [evidence IEA];  [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641286-S	ILMN_277776	RGD1564579_PREDICTED	XM_001080016.1	XM_001080016.1		293491	109462884	XM_001080016.1	RGD1564579_predicted	XP_001080016.1	ILMN_1351229	0006840026	S	969	ATTGCATGCACTGTGACCTTGGGGGGAGACAAGGAGGGGGATTGTAACCC				1q36	PREDICTED: Rattus norvegicus similar to yippee-like 3 (predicted) (RGD1564579_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660427-S	ILMN_70055	LOC498355	XM_573590.1	XM_573590.1		498355	62660427	XM_573590.1	LOC498355	XP_573590.1	ILMN_1352479	0006940215	S	695	GTCCTGTGAGGTAGCAGCTGGGTATGGTGTGTTTGTTGTTCCCGGCTTTG				14p11	PREDICTED: Rattus norvegicus similar to CG12206-PA, isoform A (LOC498355), mRNA.					
Rattus norvegicus	RefSeq	GI_62642984-S	ILMN_48611	LOC502506	XM_577987.1	XM_577987.1		502506	62642984	XM_577987.1	LOC502506	XP_577987.1	ILMN_1360895	0003360671	S	3406	CGGATGACTCCCACTTTGAAGATAGCCACCCTGAACATCAGACTGCCGTG					PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor related protein 2 (LOC502506), mRNA.					
Rattus norvegicus	RefSeq	GI_41054913-S	ILMN_65386	CCR7	NM_199489.2	NM_199489.2		287673	59709477	NM_199489.2	Ccr7	NP_955783.1	ILMN_1649747	0000610682	S	860	CATCGCTGTGGTCGTAGTGTTCGTCGTCTTCCAGCTGCCCTACAATGGGG	10	-	87925385-87925434	10q31	Rattus norvegicus chemokine (C-C motif) receptor 7 (Ccr7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence ISS]	MGC108519	MGC108519
Rattus norvegicus	RefSeq	GI_62657414-S	ILMN_62604	LOC501740	XM_221091.3	XM_221091.3		501740	62657414	XM_221091.3	LOC501740	XP_221091.3	ILMN_1371033	0005290520	S	1255	AGAGGGGTGTAAGTGCCTCTGTGGTCAGGTGGGTGAGTGGGCTTCAGTAC				10q32.2	PREDICTED: Rattus norvegicus similar to MAIR-IIb (LOC501740), mRNA.					
Rattus norvegicus	RefSeq	GI_62652636-S	ILMN_56216	LOC300041	XM_238508.2	XM_238508.2		300041	62652636	XM_238508.2	LOC300041	XP_238508.1	ILMN_1374726	0000450487	S	304	CCACCAGGCTACACAGGTTCTAGGAGTTCATTCCAGCTTCCCCCACATCC					PREDICTED: Rattus norvegicus hypothetical LOC300041 (LOC300041), mRNA.					
Rattus norvegicus	RefSeq	GI_62660210-S	ILMN_54472	LOC364121	XM_573564.1	XM_573564.1		364121	62660210	XM_573564.1	LOC364121	XP_573564.1	ILMN_1348912	0007050398	S	1055	GGCCGGTTGACCAGATACACTGGAGCTATCTGCGTTATCTATGCAGCAGG				14p22	PREDICTED: Rattus norvegicus similar to TSH receptor suppressor element-binding protein-1; TSEP-1 (LOC364121), mRNA.					
Rattus norvegicus	RefSeq	GI_47577496-S	ILMN_271572	OLR486	NM_001000682.1	NM_001000682.1		404887	47577496	NM_001000682.1	Olr486	NP_001000682.1	ILMN_1366040	0005050524	S	668	TAGCTATTCTGAGGATGAACTCTGCTGAGGGTAGGCGGAAGGCTTTCTCC	3	-	69413299-69413348	3q24	Rattus norvegicus olfactory receptor 486 (Olr486), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr486	Olr486
Rattus norvegicus	RefSeq	GI_62644675-S	ILMN_66213	LOC362486	XM_342805.2	XM_342805.2		362486	62644675	XM_342805.2	LOC362486	XP_342806.2	ILMN_2038980	0003780255	S	332	AGGCTTGGTTGGGGCTGAGTGGTCTGGAGAGGAGCCTGCTTTGCAGTCTC					PREDICTED: Rattus norvegicus similar to Mic2l1 (LOC362486), mRNA.					
Rattus norvegicus	RefSeq	GI_62662317-S	ILMN_62172	LOC290580	XM_224653.3	XM_224653.3		290580	62662317	XM_224653.3	LOC290580	XP_224653.3	ILMN_1352303	0005720292	S	1238	GACCCATGAGTTGTTGCCAGCAGAAGCCCAGACAGCACACCTGATAGCAG				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC290580), mRNA.					
Rattus norvegicus	RefSeq	GI_18543342-S	ILMN_57455	PACSIN2	NM_130740.2	NM_130740.2		124461	76880464	NM_130740.2	Pacsin2	NP_570096.2	ILMN_1368846	0000510136	S	1680	TGACAGTCCATGGGCAGGCTGGCGGAGAGATGGACACGGGCAGTTCAGGA	7	+	121545005-121545007:121545008-121545054	7q34	Rattus norvegicus protein kinase C and casein kinase substrate in neurons 2 (Pacsin2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of endocytosis [goid 45806] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of endocytosis [goid 45806] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15371016] [evidence IPI]	SdpII	SdpII
Rattus norvegicus	RefSeq	GI_24962813-S	ILMN_298434	KCNJ14	NM_170718.1	NM_170718.1		276720	24962813	NM_170718.1	Kcnj14	NP_733836.1	ILMN_1361614	0000380671	S	2499	GGAGTATTGGCTGTTTAGGGTCCGACTGAGGGGGTGGTTCTGGCTTCACC	1	-	96293922-96293971	1q22	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 14 (Kcnj14), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	 [goid 5242] [evidence IDA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir2.4	Kir2.4
Rattus norvegicus	RefSeq	GI_62639171-S	ILMN_280043	RGD1563577_PREDICTED	XM_001077336.1	XM_001077336.1		365217	109461482	XM_001077336.1	RGD1563577_predicted	XP_001077336.1	ILMN_1369311	0006660739	S	380	CATCTCCGATGACTTTGGGGAGTGCTGTTGTGCGCCATACCTGCCTGGAG				1q21	PREDICTED: Rattus norvegicus similar to cornifelin (predicted) (RGD1563577_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643499-S	ILMN_269061	RGD1563197_PREDICTED	XM_001062198.1	XM_001062198.1		295076	109466714	XM_001062198.1	RGD1563197_predicted	XP_001062198.1	ILMN_1366741	0004280390	S	831	GCCTGTGCTTGGAAGATCGGCCTTCTCTCTGCCAGCTCTGATGGACCACA				2q31	PREDICTED: Rattus norvegicus similar to arylacetamide deacetylase (esterase) (predicted) (RGD1563197_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654142-S	ILMN_295014	PLS1_PREDICTED	XM_001065065.1	XM_001065065.1		315926	109485111	XM_001065065.1	Pls1_predicted	XP_001065065.1	ILMN_1349558	0003840433	S	1933	AATATGCCATTTCAGTTGCTCGGAAGATCGGCGCCCGGATATACGCGCTG				8q31	PREDICTED: Rattus norvegicus plastin 1 (I isoform) (predicted) (Pls1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651635-S	ILMN_264614	SPRYD4	NM_001037765.1	NM_001037765.1		288772	83642821	NM_001037765.1	Spryd4	NP_001032854.1	ILMN_1374663	0002470736	S	516	CTCTGTCATCCACACACTACAGACAGATTTCCGGGGCCCAGTGGCACCTG	7	-	1496152-1496201	7q11	Rattus norvegicus SPRY domain containing 4 (Spryd4), mRNA.				MGC116283; Spryd4	MGC116283; Spryd4
Rattus norvegicus	RefSeq	GI_62652853-A	ILMN_298102	PANX2	NM_199409.1	NM_199409.1		362979	40786506	NM_199409.1	Panx2	NP_955441.1	ILMN_1376599	0003990731	S	2808	GGCTGCCCCGGGTCCAAATCAACATGCACTTTCTCCACGTAGCCTGACAC				7q34	Rattus norvegicus pannexin 2 (Panx2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IMP]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IMP]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IMP]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62658313-S	ILMN_64470	CD209B	XM_213687.4	XM_213687.4		288378	109494980	XM_213687.4	Cd209b	XP_213687.4	ILMN_1351049	0006420465	S	1109	GAGGGGAGCCCAACAACATCGGTGAAGAAGACTGTGTAGAATTTGCTGGG	12	+	2264716-2264765	12p12	PREDICTED: Rattus norvegicus CD209b antigen (Cd209b), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	The series of events in which a stimulus from a yeast is received and converted into a molecular signal [goid 1879] [evidence ISS]; The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence ISS]; The series of events in which a stimulus from a bacterium is received and converted into a molecular signal [goid 16045] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence ISS]	Interacting selectively with zymosan [goid 1872] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence ISS]; Interacting selectively with any polysaccharide [goid 30247] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34870081-S	ILMN_65349	ARHGEF18_PREDICTED	XM_221775.3	XM_221775.3		304193	109495008	XM_221775.3	Arhgef18_predicted	XP_221775.2	ILMN_1349024	0003850164	S	3105	GAAGCAGCAGCCACTCTTCAACAAGCTCATGGGCAAGGACGAGAACGCGT	12	-	2714309-2714358	12p12	PREDICTED: Rattus norvegicus rho/rac guanine nucleotide exchange factor (GEF) 18 (predicted) (Arhgef18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651218-S	ILMN_52799	LOC362780	XM_347078.2	XM_347078.2		362780	62651218	XM_347078.2	LOC362780	XP_347079.2	ILMN_1370322	0004230670	S	466	CGCTGGAGCACTTGGTTCTCACTTTGGGGAGGGCATTGAGGTGGAGCCTT					PREDICTED: Rattus norvegicus hypothetical LOC362780 (LOC362780), mRNA.					
Rattus norvegicus	RefSeq	GI_57528173-S	ILMN_287054	APOH	NM_001009626.1	NM_001009626.1		287774	57528173	NM_001009626.1	Apoh	NP_001009626.1	ILMN_1351672	0000940010	S	941	GGAGGCTCAGTGCATAGACGGCACCATCGAGATCCCCAAATGCTTCAAGG	10	+	97737850-97737899	10q32.1	Rattus norvegicus apolipoprotein H (beta-2-glycoprotein I) (Apoh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence ISS]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence ISS]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IMP]; A pathway of blood coagulation that occurs during the clotting of platelet-poor plasma, in which activation of factor X to factor Xa is effected by the combination of factor IXa + factor VIIIa + calcium ion + phospholipid [goid 7597] [evidence IEA]; A pathway of blood coagulation that occurs during the clotting of platelet-poor plasma, in which activation of factor X to factor Xa is effected by the combination of factor IXa + factor VIIIa + calcium ion + phospholipid [goid 7597] [evidence ISS]; Any process that decreases the rate, frequency, or extent of the orderly movement of endothelial cells into the extracellular matrix to form an endothelium [goid 10596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation [goid 30195] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation [goid 30195] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IMP]; The process whereby plasminogen is processed to plasmin. This process includes both the cleavage of plasminogen between Arg560-Val561 to form plasmin and cleavage at Arg310 by plasmin or trypsin to result in the final two-chain form of plasmin held together by disulfide bonds [goid 31639] [evidence IEA]; The process whereby plasminogen is processed to plasmin. This process includes both the cleavage of plasminogen between Arg560-Val561 to form plasmin and cleavage at Arg310 by plasmin or trypsin to result in the final two-chain form of plasmin held together by disulfide bonds [goid 31639] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptosis [goid 33033] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptosis [goid 33033] [evidence ISS]; The directed movement of triacylglycerol into, out of, within or between cells. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 34197] [evidence IDA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell apoptosis [goid 34392] [evidence ISS]; Any process that activates or increases the activity of the enzyme lipoprotein lipase [goid 51006] [evidence IEA]; Any process that activates or increases the activity of the enzyme lipoprotein lipase [goid 51006] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; A pathway of blood coagulation that occurs during the clotting of platelet-poor plasma, in which activation of factor X to factor Xa is effected by the combination of factor IXa + factor VIIIa + calcium ion + phospholipid [goid 7597] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation [goid 30195] [evidence IEA]; The process whereby plasminogen is processed to plasmin. This process includes both the cleavage of plasminogen between Arg560-Val561 to form plasmin and cleavage at Arg310 by plasmin or trypsin to result in the final two-chain form of plasmin held together by disulfide bonds [goid 31639] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptosis [goid 33033] [evidence IEA]; Any process that activates or increases the activity of the enzyme lipoprotein lipase [goid 51006] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence IEA]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IDA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; Increases the activity of a lipoprotein lipase, an enzyme that catalyzes of the hydrolysis of a lipid within a lipoprotein [goid 60230] [evidence IEA]; Increases the activity of a lipoprotein lipase, an enzyme that catalyzes of the hydrolysis of a lipid within a lipoprotein [goid 60230] [evidence ISS]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IEA]; Increases the activity of a lipoprotein lipase, an enzyme that catalyzes of the hydrolysis of a lipid within a lipoprotein [goid 60230] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51948489-S	ILMN_268910	RGD1303232	NM_001004261.1	NM_001004261.1		309381	51948489	NM_001004261.1	RGD1303232	NP_001004261.1	ILMN_1362634	0003610037	S	1811	GCCATCTTCCCATGATGCCCTGCTTCCCATGATGCCACTGGAGACAACTG	1	+	248162091-248162140	1q54	Rattus norvegicus Phytn_dehydro and Pyr_redox domain containing protein RGD1303232 (RGD1303232), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC94853	MGC94853
Rattus norvegicus	RefSeq	GI_62651440-S	ILMN_64099	RGD1310315_PREDICTED	XM_234418.4	XM_234418.4		314319	109478515	XM_234418.4	RGD1310315_predicted	XP_234418.4	ILMN_1349927	0000770750	S	1620	TGCCACCTTGACATTACAGGAGTTCTTCAGGGCTGTCTCCACAGGGAAAG	6	-	109132374-109132423	6q31	PREDICTED: Rattus norvegicus similar to Homeobox prospero-like protein PROX1 (PROX 1) (predicted) (RGD1310315_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659554-S	ILMN_56326	RALGPS2	XM_222773.4	XM_222773.4		304887	109498053	XM_222773.4	Ralgps2	XP_222773.3	ILMN_1358679	0006220427	S	2834	TCTCGAGTCAAGTGGATTCTCCAGCCACAGGCATCATCGCCACGGGGAAG	13	-	72004967-72005016	13q22	PREDICTED: Rattus norvegicus Ral GEF with PH domain and SH3 binding motif 2 (Ralgps2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647342-S	ILMN_62487	RGD1306494_PREDICTED	XM_342698.3	XM_342698.3		362374	109472110	XM_342698.3	RGD1306494_predicted	XP_342699.3	ILMN_1365875	0006040279	S	2018	CCAGGAGGCAAGGTGTCATTCTCCGTTGGGATATTTATAGGAGGCAGAGG	4	+	87185976-87186025	4q24	PREDICTED: Rattus norvegicus similar to Expressed sequence AW146242 (predicted) (RGD1306494_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718864-S	ILMN_62487	RGD1306494_PREDICTED	XM_342698.3	XM_342698.3		362374	109472110	XM_342698.3	RGD1306494_predicted	XP_342699.3	ILMN_1366732	0001770315	S	2777	GAGAGCATGCACAAGTCTGCTTCAGGTCTGTCTCCAAGCACCGGCTGTAC	4	+	87186735-87186784	4q24	PREDICTED: Rattus norvegicus similar to Expressed sequence AW146242 (predicted) (RGD1306494_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658156-S	ILMN_286319	PSMD2	NM_001031639.1	NM_001031639.1		287984	72255508	NM_001031639.1	Psmd2	NP_001026809.1	ILMN_1353108	0005050253	S	2570	GGCTGGGAAGCCCAAAACGATCACGGGGTTCCAGACTCACACAACTCCAG	11	-	82478454-82478503	11q23	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 (Psmd2), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the activity of an enzyme [goid 30234] [evidence IEA]	MGC116280	MGC116280
Rattus norvegicus	RefSeq	GI_62653298-S	ILMN_271655	LOC500956	NM_001025054.1	NM_001025054.1		500956	68163532	NM_001025054.1	LOC500956	NP_001020225.1	ILMN_1372476	0003940451	S	397	GGGCGCTCTATCGTGTACGGTGTCAAGCAGAAAGATGGACAGGAGCTGAG	8	+	19894672-19894690:19894819-19894849	8q13	Rattus norvegicus hypothetical protein LOC500956 (LOC500956), mRNA.					
Rattus norvegicus	RefSeq	GI_62653300-S	ILMN_271655	LOC500956	NM_001025054.1	NM_001025054.1		500956	68163532	NM_001025054.1	LOC500956	NP_001020225.1	ILMN_1369741	0001850121	S	1024	TCAGCCGCAGATTGCTACAACCGGAGAGGTGAGCTGGTGTGCACCCTACA	8	+	19898607-19898656	8q13	Rattus norvegicus hypothetical protein LOC500956 (LOC500956), mRNA.					
Rattus norvegicus	RefSeq	GI_47576894-S	ILMN_262659	OLR229	NM_001000204.1	NM_001000204.1		293373	47576894	NM_001000204.1	Olr229	NP_001000204.1	ILMN_1349351	0006520377	S	895	AGTGCCTTCAAAAGACTAGCAGCAAGAATAGCCTTCTTTCAGAAGCAGTG	1	-	164362071-164362120	1q33	Rattus norvegicus olfactory receptor 229 (Olr229), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr229	Olr229
Rattus norvegicus	RefSeq	GI_62662630-S	ILMN_66633	LOC502081	XM_577516.1	XM_577516.1		502081	62662630	XM_577516.1	LOC502081	XP_577516.1	ILMN_1361063	0003610292	S	2239	TCCCATGTGTCCTATCAGACCACCACAGGCTAAAGCCGGTCTTCCATAAA				16p11	PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502081), mRNA.					
Rattus norvegicus	RefSeq	GI_50657393-S	ILMN_302567	GFPT2	NM_001002819.2	NM_001002819.2		360518	70778845	NM_001002819.2	Gfpt2	NP_001002819.2	ILMN_1360656	0006520746	S	1923	AGCAGGTCACTGCCCGCCAGGGTCGCCCAATCATTCTGTGCTCCAAGGAT	10	+	35330440-35330460:35332739-35332767	10q22	Rattus norvegicus glutamine-fructose-6-phosphate transaminase 2 (Gfpt2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y [goid 16051] [evidence IEA]	Catalysis of the reaction: L-glutamine + D-fructose 6-phosphate = L-glutamate + D-glucosamine 6-phosphate [goid 4360] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112555	MGC112555
Rattus norvegicus	RefSeq	GI_27704319-S	ILMN_161788	LOC296318	XM_215910.1	XM_215910.1			27704319	XM_215910.1	LOC296318		ILMN_2040322	0006270035	S	497	TGGGTCACACCAGCCAGGGAGACCCTCTGGGAAGAAGCTGCCACACACAA										
Rattus norvegicus	RefSeq	GI_62656644-S	ILMN_61182	LOC363657	XM_343946.2	XM_343946.2		363657	62656644	XM_343946.2	LOC363657	XP_343947.2	ILMN_1361025	0004810452	S	281	TAACTTCACCAACACACTGCCTGCGGCCCCATCAGCACCAAGGCCAGCAG					PREDICTED: Rattus norvegicus similar to Ran-interacting protein MOG1 (LOC363657), mRNA.					
Rattus norvegicus	RefSeq	GI_62654740-S	ILMN_50114	TNFRSF21_PREDICTED	XM_236992.4	XM_236992.4		316256	109485782	XM_236992.4	Tnfrsf21_predicted	XP_236992.4	ILMN_1370428	0006040121	S	2403	CCCAGGCTGAGGACAAACTGGACCGTCTCTTCGAGATCATTGGGGTCAAG	9	-	13589958-13590007	9q12	PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 21 (predicted) (Tnfrsf21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018331-S	ILMN_277980	CML4	NM_022635.1	NM_022635.1		64570	12018331	NM_022635.1	Cml4	NP_072157.1	ILMN_1373396	0001690471	S	542	TGACTGGCCTTTTGCAGCAAGGTGCTGTGACCCTCTACTACAGCATGGGC	4	-	120001464-120001513	4q34	Rattus norvegicus camello-like 4 (Cml4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence NAS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Nat8; Cml4	Nat8; Cml4
Rattus norvegicus	RefSeq	GI_62644217-S	ILMN_65048	AMY2_PREDICTED	XM_345278.2	XM_345278.2		365914	62644217	XM_345278.2	Amy2_predicted	XP_345279.2	ILMN_1364109	0006510450	S	1131	ATCTCGAAGAGGAAGGCTTTGTCAAGCACTCTACAGACTGGTCTTCCTGC				2q41	PREDICTED: Rattus norvegicus amylase 2, pancreatic (predicted) (Amy2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577236-S	ILMN_267699	OLR37	NM_001000504.1	NM_001000504.1		308853	47577236	NM_001000504.1	Olr37	NP_001000504.1	ILMN_1354700	0004560095	S	901	GATGTCAAGGCGGCCATCACTAAAATTGTCTGTCACCAGGATCCAAAGAG	1	+	157123943-157123992	1q32	Rattus norvegicus olfactory receptor 37 (Olr37), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758031-S	ILMN_291562	BHLHB2	NM_053328.1	NM_053328.1		79431	16758031	NM_053328.1	Bhlhb2	NP_445780.1	ILMN_1374180	0001990253	S	2071	GCTAAGGTGGTGAGGTAGCCAACACTGGCATGTCTCGGTAGTGGTTTGGG	4	+	144144881-144144930	4q41	Rattus norvegicus basic helix-loop-helix domain containing, class B2 (Bhlhb2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The synchronization of a circadian rhythm to environmental time cues such as light [goid 9649] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEP]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence NAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]	Stra13; SHARP-2; Stra14; Sharp2; Dec1	Stra13; SHARP-2; Stra14; Sharp2; Dec1
Rattus norvegicus	RefSeq	GI_19705432-S	ILMN_283301	TAAR1	NM_134328.1	NM_134328.1		113914	19705432	NM_134328.1	Taar1	NP_599155.1	ILMN_1366305	0000670280	S	699	AGGGGAAAGCAGAGCGCCACAAAGCAAGGAAACAAAAGCCGCAAAAACCT	1	-	22045614-22045663	1p12	Rattus norvegicus trace-amine-associated receptor 1 (Taar1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	 [goid 1594] [evidence ISS];  [goid 1594] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a biogenic amine to initiate a change in cell activity [goid 8227] [evidence ISS]	Trar1; Tar1	Trar1; Tar1
Rattus norvegicus	RefSeq	GI_6978610-S	ILMN_264429	CBS	NM_012522.1	NM_012522.1		24250	6978610	NM_012522.1	Cbs	NP_036654.1	ILMN_1353874	0004570148	S	1995	AGCCAGGAAAGATAGGCACAGACTACACTCGCCACAAGACTCAGGGTGCC	20	-	10047955-10048004	20p12	Rattus norvegicus cystathionine beta synthase (Cbs), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine [goid 6535] [evidence TAS]; The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid [goid 19344] [evidence ISS]; The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes [goid 19346] [evidence IDA]; Any process that modulates the frequency, rate or extent of JUN kinase activity [goid 43506] [evidence ISS]; The chemical reactions and pathways involving homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. Homocysteine is an important intermediate in the metabolic reactions of its S-methyl derivative, methionine [goid 50667] [evidence TAS]; The chemical reactions and pathways involving homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. Homocysteine is an important intermediate in the metabolic reactions of its S-methyl derivative, methionine [goid 50667] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine [goid 6535] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cysteine, via the intermediate cystathionine [goid 19343] [evidence IEA]	Catalysis of the reaction: L-serine + L-homocysteine = cystathionine + H2O [goid 4122] [evidence TAS]; Catalysis of the reaction: L-serine + L-homocysteine = cystathionine + H2O [goid 4122] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence TAS]; Catalysis of the reaction: L-serine + L-homocysteine = cystathionine + H2O [goid 4122] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.18284	ILMN_285524	ACBD4	NM_001012013.1	NM_001012013.1		303577	58865595	NM_001012013.1	Acbd4	NP_001012013.1	ILMN_1530330	0002760180	S	1741	AAGATTCACGTGCAATTGAACACTTCATTAAACAAAAGAAAACCTCAAAA	10	+	92285942-92285988	10q32.1	Rattus norvegicus acyl-Coenzyme A binding domain containing 4 (Acbd4), mRNA.			Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865595-A	ILMN_285524	ACBD4	NM_001012013.1	NM_001012013.1		303577	58865595	NM_001012013.1	Acbd4	NP_001012013.1	ILMN_1376902	0003290039	S	1667	GAGGAGTGTATAGGCTGGGGGCTGGGATGCCCTGAACACACGCACAAGTA	10	+	92285868-92285917	10q32.1	Rattus norvegicus acyl-Coenzyme A binding domain containing 4 (Acbd4), mRNA.			Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645022-S	ILMN_264253	MNAB_PREDICTED	XM_001053668.1	XM_001053668.1		311909	109469801	XM_001053668.1	Mnab_predicted	XP_001053668.1	ILMN_1353829	0001230026	S	3691	ATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTTCAAGCCCTC				3q11	PREDICTED: Rattus norvegicus membrane associated DNA binding protein (predicted), transcript variant 3 (Mnab_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742578-S	ILMN_264528	HNRNPF	NM_001037285.1	NM_001037285.1		64200	82546814	NM_001037285.1	Hnrnpf	NP_001032362.1	ILMN_1369798	0000460041	S	1886	CACACTGGGGGCATGTACTTTTCTGGAGAACTCAAGGTGCTAGATCCCTG	4	+	154228096-154228145	4q42	Rattus norvegicus heterogeneous nuclear ribonucleoprotein F (Hnrnpf), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 43484] [evidence IEA]; Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 43484] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence IPI]	MGC125106	MGC125106
Rattus norvegicus	RefSeq	GI_62666752-S	ILMN_274026	APXL	XM_001064752.1	XM_001064752.1		317435	109511681	XM_001064752.1	Apxl	XP_001064752.1	ILMN_1367401	0005670110	S	4238	GCAGCATGAGGATGCGAAGGAGCTTAAAGAGAACCTGGACCGTCGTGAGC				Xq21	PREDICTED: Rattus norvegicus apical protein-like (Xenopus laevis) (Apxl), mRNA.					
Rattus norvegicus	RefSeq	GI_62657675-S	ILMN_291076	PIGP_PREDICTED	XM_001055025.1	XM_001055025.1		288238	109494063	XM_001055025.1	Pigp_predicted	XP_001055025.1	ILMN_1353246	0005550441	S	443	ACCAACAGAGGAAAAGCTACCAAGAGGACGCCATCCCAGCATTAAGAGAC				11q11	PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class P (predicted) (Pigp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758749-S	ILMN_281592	GSR	NM_053906.1	NM_053906.1		116686	16758749	NM_053906.1	Gsr	NP_446358.1	ILMN_1352580	0000610008	S	1352	GGGCCACCAAGGCCGACTTCGACAATAGGGTCGCCATTCATCCTACCTCT	16	-	62255570-62255619	16q12.3	Rattus norvegicus glutathione reductase (Gsr), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IEA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IMP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+ [goid 4362] [evidence TAS]; Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+ [goid 4362] [evidence ISS]; Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+ [goid 4362] [evidence IEA]; Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+ [goid 4362] [evidence IDA]; Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+ [goid 4362] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine [goid 43295] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_57164132-S	ILMN_293578	NDUFC2	NM_001009290.1	NM_001009290.1		293130	57164132	NM_001009290.1	Ndufc2	NP_001009290.1	ILMN_1374104	0003130528	S	175	GGCTTCCTGGGCTACTGCACGGGCCTGATGGACAACATGATGCGAATGAG	1	+	154636063-154636112	1q32	Rattus norvegicus NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 (Ndufc2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I [goid 6120] [evidence IEA]	Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence IEA]	MGC109009	MGC109009
Rattus norvegicus	RefSeq	GI_13786143-S	ILMN_264968	PREP	NM_031324.1	NM_031324.1		83471	13786143	NM_031324.1	Prep	NP_112614.1	ILMN_1369198	0006100717	S	2388	GCAAGCCGCCGAGCAGGACTGCCACCGGGATTTTAGCTTTTCTATCTCCT	20	+	49144319-49144368	20q13	Rattus norvegicus prolyl endopeptidase (Prep), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]	rPop	rPop
Rattus norvegicus	RefSeq	GI_7549764-S	ILMN_299975	HK2	NM_012735.1	NM_012735.1		25059	7549764	NM_012735.1	Hk2	NP_036867.1	ILMN_1351347	0001850408	S	3490	TGTGTCATCCACGAGCTACAGACCTTGGGGACAGGAGTGGCTTTGGTCGC	4	-	116925818-116925867	4q34	Rattus norvegicus hexokinase 2 (Hk2), mRNA.	The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose [goid 6007] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y [goid 46835] [evidence ISS]; The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y [goid 46835] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence IDA]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence ISS]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence IEA]; Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate [goid 4396] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642977-S	ILMN_48091	RGD1564042_PREDICTED	XM_215493.4	XM_215493.4		294774	109464454	XM_215493.4	RGD1564042_predicted	XP_215493.2	ILMN_1357874	0000870292	S	1479	ACTTGGTAACCAGATACTGGTGTGTCAGCGACGGACTCGTCTTCCTCTTC	2	+	54409824-54409873	2q16	PREDICTED: Rattus norvegicus similar to osmosis responsive factor (predicted) (RGD1564042_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651010-I	ILMN_65690	DNCH1	XM_579426.1	XM_579426.1		29489	62651010	XM_579426.1	Dnch1	XP_579426.1	ILMN_1376210	0006020047	S	3135	GGTGACTGAGATTGGCACTGTATGCACTGTTGGTCAGTAACGTCTAGCTC				6q32	PREDICTED: Rattus norvegicus dynein, cytoplasmic, heavy chain 1 (Dnch1), mRNA.					
Rattus norvegicus	RefSeq	GI_56799415-S	ILMN_290476	CITED2	NM_053698.2	NM_053698.2		114490	56799415	NM_053698.2	Cited2	NP_446150.1	ILMN_1352067	0006380181	S	1519	GGCTGCATGAACTTTGAAGGGCAGATATTACTGCACAAACTGCCGTCTCG	1	+	12723493-12723542	1p12	Rattus norvegicus Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 (Cited2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother [goid 60136] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93288; Mrg1	MGC93288; Mrg1
Rattus norvegicus	RefSeq	GI_62642063-S	ILMN_49332	LOC499339	XM_574647.1	XM_574647.1		499339	62642063	XM_574647.1	LOC499339	XP_574647.1	ILMN_1354251	0006760278	S	1421	GTTGTATATGTAGAGAGCAAAGACAGGGCCTCATGTGTTCTGGGGGAGCG				1q51	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 19, Brigham & Womens Genetics 1357 expressed (LOC499339), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]		Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646671-S	ILMN_276833	RGD1564792_PREDICTED	XM_001061968.1	XM_001061968.1		499976	109472963	XM_001061968.1	RGD1564792_predicted	XP_001061968.1	ILMN_1374326	0006220600	S	1369	AGATGGTGTTGCGGTCGGCGTTGGCTGCCCGAAGAGGAAGAGATGACTGT				4q11	PREDICTED: Rattus norvegicus RGD1564792 (predicted) (RGD1564792_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654614-S	ILMN_293987	LOC302192	XM_001065392.1	XM_001065392.1		302192	109514119	XM_001065392.1	LOC302192	XP_001065392.1	ILMN_1373542	0001690102	S	1005	GCAGTGGACAGCCTTTTCCTTCATACCCCCCACTCCAACAAAGAGACCTC				9q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC302192), mRNA.					
Rattus norvegicus	RefSeq	GI_62663534-S	ILMN_262571	RGD1561697_PREDICTED	XM_001066281.1	XM_001066281.1		291087	109505709	XM_001066281.1	RGD1561697_predicted	XP_001066281.1	ILMN_1358299	0000460601	S	1014	AATAGTCACGATGGGGTCACCACTGTCTCCCCAGTGCTTAGTCGCTGACC				17p12	PREDICTED: Rattus norvegicus similar to OTTMUSP00000000636 (predicted) (RGD1561697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799411-S	ILMN_279443	DNAJA2	NM_032079.2	NM_032079.2		84026	56799411	NM_032079.2	Dnaja2	NP_114468.2	ILMN_1372341	0001770279	S	1591	TGTACAATTCGTCCTGAAGCTGTGTGTTTGGCTGCACCTGCATAAGCTGC	19	+	22871593-22871642	19q11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily A, member 2 (Dnaja2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]	MGC93325	MGC93325
Rattus norvegicus	RefSeq	GI_18266681-S	ILMN_300100	CDK5	NM_080885.1	NM_080885.1		140908	18266681	NM_080885.1	Cdk5	NP_543161.1	ILMN_1364498	0003190093	S	866	CGGGGAGAGACCTGTTGCAGAACCTGTTGAAGTGTAACCCAGTGCAGCGC	4	+	6123762-6123782:6123910-6123938	4q11	Rattus norvegicus cyclin-dependent kinase 5 (Cdk5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; A protein complex that activates cyclin-dependent kinase 5; composed of regulatory and catalytic subunits [goid 16533] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence TAS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated [goid 44428] [evidence IDA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence TAS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence TAS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IMP]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IDA]; The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14044] [evidence ISS]; The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14044] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence ISS]; The process whose specific outcome is the progression of the cerebellar cortex over time, from its formation to the mature structure. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function [goid 21695] [evidence ISS]; The process that gives rise to the cerebellar cortex. This process pertains to the initial formation of a structure from unspecified parts. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function [goid 21697] [evidence ISS]; The progression of the hippocampus over time from its initial formation until its mature state [goid 21766] [evidence ISS]; The detachment of cells from radial glial fibers at the appropriate time when they cease to migrate and form distinct layer in the cerebral cortex [goid 21819] [evidence ISS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; The process whose specific outcome is the progression of the corpus callosum over time, from its formation to the mature structure. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provide communication between the right and left cerebral hemispheres [goid 22038] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IMP]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31397] [evidence ISS]; A process that decreases synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 31914] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32801] [evidence ISS]; The process of introducing a phosphate group to a serine residue of the STAT3 protein [goid 33136] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IDA]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of calcium ion-dependent exocytosis [goid 45956] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of proteins from the nucleus into the cytoplasm [goid 46826] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence IMP]; Long distance growth of a single process [goid 48675] [evidence TAS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence IMP]; Any process that modulates the establishment or extent of the postsynaptic membrane potential, which is generated by changes in the membrane potential of the post synaptic neuron that receives information at a synapse. The presynaptic neuron releases neurotransmitters into the synaptic cleft which bind to receptors on the postsynaptic neuron. After being bound by the neurotransmitters, these receptors can open or close an ion channel, allowing ions to enter or leave the cell and therefore altering the membrane potential of the postsynaptic neuron [goid 60078] [evidence ISS]; Any process that modulates the establishment or extent of the postsynaptic membrane potential, which is generated by changes in the membrane potential of the post synaptic neuron that receives information at a synapse. The presynaptic neuron releases neurotransmitters into the synaptic cleft which bind to receptors on the postsynaptic neuron. After being bound by the neurotransmitters, these receptors can open or close an ion channel, allowing ions to enter or leave the cell and therefore altering the membrane potential of the postsynaptic neuron [goid 60078] [evidence IEA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with one of the p53 family of proteins [goid 2039] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with the protein-tyrosine kinase receptor Neu/ErbB-2/HER2 [goid 5176] [evidence ISS]; Interacting selectively with the protein-tyrosine kinase receptor Neu/ErbB-2/HER2 [goid 5176] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is increased [goid 30549] [evidence ISS]; Interacting selectively with the protein-tyrosine kinase receptor ErbB-3/HER3 [goid 43125] [evidence ISS]; Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein [goid 50321] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718606-S	ILMN_48865	LOC363405	XM_347136.2	XM_347136.2		363405	62718606	XM_347136.2	LOC363405	XP_347137.2	ILMN_1361178	0006180161	S	890	ATCAAACAGGGGCCACCTGTGGGAGAGAGGAAACACTGGTGTCCCGGAGG					PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC363405), mRNA.		The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652737-S	ILMN_300912	JOSD1	NM_001025009.1	NM_001025009.1		315134	68163458	NM_001025009.1	Josd1	NP_001020180.1	ILMN_1350495	0001980411	S	252	AGCTTCCCCAGGCAGCACCCCCACAAATCTACCATGAGAAGCAGCGCAGG	7	-	117929854-117929903	7q34	Rattus norvegicus Josephin domain containing 1 (Josd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]			MGC109161; RGD1305388	MGC109161; RGD1305388
Rattus norvegicus	RefSeq	GI_62078498-S	ILMN_283715	DCTD	NM_001013882.1	NM_001013882.1		290741	62078498	NM_001013882.1	Dctd	NP_001013904.1	ILMN_1365928	0004150364	S	1484	ATTATGGGAGACACTGTACCTGGAGTTAGTCCACGCCAGACCCACTGGCG	16	-	47241278-47241327	16q11	Rattus norvegicus dCMP deaminase (Dctd), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]	Catalysis of the reaction: dCMP + H2O = dUMP + NH3 [goid 4132] [evidence IEA]; Catalysis of the reaction: dCMP + H2O = dUMP + NH3 [goid 4132] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660075-S	ILMN_274482	RGD1564750_PREDICTED	XM_001058498.1	XM_001058498.1		289433	109500192	XM_001058498.1	RGD1564750_predicted	XP_001058498.1	ILMN_1362789	0001980047	S	2068	GGCTCAGTTATTGCTTTCCACGTTGTCCTGGGATATTTGGGCTCCTTGGC				14p22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1564750_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661262-S	ILMN_48401	WDHD1_PREDICTED	XM_223933.4	XM_223933.4		305827	109501524	XM_223933.4	Wdhd1_predicted	XP_223933.4	ILMN_1359684	0001170008	S	3231	GATCTGTGAGACGGAGAAGCAGGAAGAGGCAGTGAAGGAGAATCTGGAGC	15	-	23195683-23195732	15p14	PREDICTED: Rattus norvegicus WD repeat and HMG-box DNA binding protein 1 (predicted) (Wdhd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658814-S	ILMN_49713	PIWIL1_PREDICTED	XM_344105.3	XM_344105.3		363912	109495826	XM_344105.3	Piwil1_predicted	XP_344106.3	ILMN_1362153	0002450551	S	2519	GACTTTTTCATCGTGAGCCAGGCAGTGAGAAGTGGGAGTGTGTCCCCAAC	12	-	29017252-29017301	12q14	PREDICTED: Rattus norvegicus piwi like homolog 1 (Drosophila) (predicted) (Piwil1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9966774-S	ILMN_294783	NOTCH3	NM_020087.2	NM_020087.2		56761	9966774	NM_020087.2	Notch3	NP_064472.2	ILMN_1353245	0002370132	S	7010	GGCCCCAGCCAGAAGTAACCCCCAAGAGGCAGGTGATGGCCTAAGTTCTT	7	-	12688527-12688532:12688533-12688576	7q11	Rattus norvegicus Notch homolog 3 (Drosophila) (Notch3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IDA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence TAS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 50793] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57528237-S	ILMN_289709	PEPD	NM_001009641.1	NM_001009641.1		292808	57528237	NM_001009641.1	Pepd	NP_001009641.1	ILMN_1352307	0000940446	S	1340	TTCGCAACTTTGGTGGGGTCCGTATTGAGGAAGACGTTGTCGTGACCGAC	1	+	87547552-87547589:87547590-87547601	1q21	Rattus norvegicus peptidase D (Pepd), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Pepd; MGC95081	Pepd; MGC95081
Rattus norvegicus	RefSeq	GI_9506844-S	ILMN_266023	RABEP1	NM_019124.1	NM_019124.1		54190	9506844	NM_019124.1	Rabep1	NP_061997.1	ILMN_1351385	0007100273	S	3356	GGGCCCAAAGGTACCAGGGCAAATAACTGGCACCATCTACCCTTTCGAAG	10	+	57847387-57847436	10q24	Rattus norvegicus rabaptin, RAB GTPase binding effector protein 1 (Rabep1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence TAS]; Organelle consisting of networks of 60nm tubules organized around the microtubule organizing centre in some cell types. They transport receptors from late endosomes back to the plasma membrane for recycling and are also involved in membrane trafficking [goid 55037] [evidence IEA]	The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes [goid 6895] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.15760	ILMN_275906	SAR1A	NM_001007739.1	NM_001007739.1		361842	56090262	NM_001007739.1	Sar1a	NP_001007740.1	ILMN_1530344	0003450176	S	1052	GAAAGTGTTGTTAATGTAATTGGTATCCCTTCTCTAACTTTTTGAGTTCA	20	+	29059049-29059098	20q11	Rattus norvegicus SAR1 gene homolog A (S. cerevisiae) (Sar1a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC94305; Sara1	MGC94305; Sara1
Rattus norvegicus	RefSeq	GI_56090262-S	ILMN_275906	SAR1A	NM_001007739.1	NM_001007739.1		361842	56090262	NM_001007739.1	Sar1a	NP_001007740.1	ILMN_1372263	0001980594	S	2431	CCATAAACTGGCCAAGAGGTTGCTGCAGTGAGTGCAACTCCACCTGAGGG	20	+	29060428-29060477	20q11	Rattus norvegicus SAR1 gene homolog A (S. cerevisiae) (Sar1a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC94305; Sara1	MGC94305; Sara1
Rattus norvegicus	RefSeq	GI_62641420-S	ILMN_291485	RGD1560664_PREDICTED	XR_008678.1	XR_008678.1		502355	109462566	XR_008678.1	RGD1560664_predicted		ILMN_1349534	0002450528	S	309	GTGGAACAGCACCACTCTTGATGGCAAGCAACCCTGTGACAAGAAGGCTG				1q32	PREDICTED: Rattus norvegicus similar to High mobility group protein 1-like 10 (HMG-1L10) (predicted) (RGD1560664_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162364-S	ILMN_295931	BEGAIN	NM_024163.1	NM_024163.1		79146	13162364	NM_024163.1	Begain	NP_077077.1	ILMN_1353201	0005340170	S	2543	TCTGAACACTGAGGAGGGGAACCAAAGCCACTTAGGGCGCAGAAAATGTC				6q32	Rattus norvegicus brain-enriched guanylate kinase-associated (Begain), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9756850] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12097487] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [pmid 12097487] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62652727-S	ILMN_271271	MAFF_PREDICTED	XM_001076469.1	XM_001076469.1		366960	109482560	XM_001076469.1	Maff_predicted	XP_001076469.1	ILMN_1371285	0004150494	S	310	AAGCGCGTGTGCCAGAAGGAGGAGCTGCAGAAGCAGAAGTCCGAGCTGGA				7q34	PREDICTED: Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian) (predicted) (Maff_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661513-S	ILMN_69534	MCPT1L4	XM_573784.1	XM_573784.1		408239	62661513	XM_573784.1	Mcpt1l4	XP_573784.1	ILMN_1371677	0001940138	S	733	TCCAGATGTGTGTGGGCAGTCCTGGAAGGATGAGATCAGGAGACTCGGGG				15p12	PREDICTED: Rattus norvegicus mast cell protease 1-like 4 (Mcpt1l4), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644856-S	ILMN_52276	LOC499770	XM_575107.1	XM_575107.1		499770	62644856	XM_575107.1	LOC499770	XP_575107.1	ILMN_1363220	0003990292	S	1500	AGGCACAGGTGGCCAAGAGGCCTGGTTAGATTCAAGGTCACCTCTTCCAG					PREDICTED: Rattus norvegicus similar to LOC495800 protein (LOC499770), mRNA.					
Rattus norvegicus	RefSeq	GI_62649266-S	ILMN_66225	LOC500508	XM_580078.1	XM_580078.1		500508	62649266	XM_580078.1	LOC500508	XP_580078.1	ILMN_1373742	0004210575	S	533	CTGGAAGATGGCTGCCCCGGCAGAAAGTGTGAGGTCTCTTCTATTGGTAA					PREDICTED: Rattus norvegicus LOC500508 (LOC500508), mRNA.					
Rattus norvegicus	RefSeq	GI_62646207-S	ILMN_262960	ERGIC3_PREDICTED	XM_001066442.1	XM_001066442.1		296306	109471163	XM_001066442.1	Ergic3_predicted	XP_001066442.1	ILMN_1373097	0001170292	S	1048	GTGGACGGGGAGGTGCTGAGGACAAACCAGTTCTCTGTGACCAGGCACGA				3q42	PREDICTED: Rattus norvegicus ERGIC and golgi 3 (predicted) (Ergic3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646495-S	ILMN_293413	RGD1563798_PREDICTED	XR_007778.1	XR_007778.1		499950	109471527	XR_007778.1	RGD1563798_predicted		ILMN_1350364	0006110731	S	1786	GGGGCTAAGGGGATGAGTGAAGTGTAGTGGGAAGGGCCTGAGTGTCATGT					PREDICTED: Rattus norvegicus similar to BC040823 protein (predicted) (RGD1563798_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661534-S	ILMN_47950	PSPC1_PREDICTED	XM_224234.3	XM_224234.3		305910	62661534	XM_224234.3	Pspc1_predicted	XP_224234.3	ILMN_1362272	0003520348	S	2171	CTAAGGGGTCAATGCTGTAGTGTATTAGTGGGTGGGAGGCATGGGGGCTG				15p12	PREDICTED: Rattus norvegicus paraspeckle protein 1 (predicted) (Pspc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645778-S	ILMN_52359	LOC497780	XM_579486.1	XM_579486.1		497780	62645778	XM_579486.1	LOC497780	XP_579486.1	ILMN_1358507	0004280309	S	4864	GTTGCCTTGCAGGTGGTGCATAAAGTGGACGGGTGGGATGAGTCCTGTTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_024353 (LOC497780), mRNA.					
Rattus norvegicus	RefSeq	GI_62638905-S	ILMN_283882	LENG8	XM_001065340.1	XM_001065340.1		361506	109458002	XM_001065340.1	Leng8	XP_001065340.1	ILMN_1371412	0006510687	S	4283	TCCCATGCTGGGGGGCCAGCAGAAAGAAGACAGGCTGTCCAGCCCGCACC	1	-	69453771-69453820	1q12	PREDICTED: Rattus norvegicus leukocyte receptor cluster (LRC) member 8 (Leng8), mRNA.					
Rattus norvegicus	RefSeq	GI_62638904-S	ILMN_283882	LENG8	XM_001065340.1	XM_001065340.1		361506	109458002	XM_001065340.1	Leng8	XP_001065340.1	ILMN_1364069	0000540687	S	5106	GGCAGAGCTACCTGCCCCTGGCTCAAATTCCCCTGAACTGACCAAGGTTT	1	-	69452948-69452997	1q12	PREDICTED: Rattus norvegicus leukocyte receptor cluster (LRC) member 8 (Leng8), mRNA.					
Rattus norvegicus	RefSeq	GI_62645619-S	ILMN_281185	NUSAP1_PREDICTED	XM_001075591.1	XM_001075591.1		311336	109470466	XM_001075591.1	Nusap1_predicted	XP_001075591.1	ILMN_1351744	0006860195	S	903	CATGTGACTGCACCTGGGAGTGCTTCAAAGGGCCAGGCTGTGCTCAAGAC				3q35	PREDICTED: Rattus norvegicus nucleolar and spindle associated protein 1 (predicted) (Nusap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660708-S	ILMN_284846	RNF185	NM_001024271.1	NM_001024271.1		360967	66730361	NM_001024271.1	Rnf185	NP_001019442.1	ILMN_1366460	0004590022	S	407	GGACAAGGTCATCCCACTCTATGGCAGAGGCAGCACTGGACAGCAGGATC	14	-	84053784-84053833	14q21	Rattus norvegicus ring finger protein 185 (Rnf185), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34855278-S	ILMN_291831	HOXD12_PREDICTED	XM_001063522.1	XM_001063522.1		366082	109470113	XM_001063522.1	Hoxd12_predicted	XP_001063522.1	ILMN_1369412	0004730605	S	427	AGCCTGGTTCACTCGGCTCTCAAAGGCACCAAGTACGACTTCGCGGGTGT				3q23	PREDICTED: Rattus norvegicus homeo box D12 (predicted) (Hoxd12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655341-S	ILMN_64288	GPR55_PREDICTED	XM_576605.2	XM_576605.2		501177	109486305	XM_576605.2	Gpr55_predicted	XP_576605.1	ILMN_1356960	0003440075	S	620	TTCTACTGAGCATTCAGGGGGACGACCAGTGGGTCCGAAAGAGAGCCTGC	9	-	84658265-84658314	9q35	PREDICTED: Rattus norvegicus G protein-coupled receptor 55 (predicted) (Gpr55_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658247-S	ILMN_298330	VPREB1_MAPPED	XM_001081953.1	XM_001081953.1		303782	109494790	XM_001081953.1	Vpreb1_mapped	XP_001081953.1	ILMN_1354397	0006590092	S	110	CCAGGTGCTGGCCCCATAGGCTTCCATCCAAGTCCCAGTTATGGTACGTC				11q23	PREDICTED: Rattus norvegicus pre-B lymphocyte gene 1 (mapped) (Vpreb1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62659379-S	ILMN_64915	LOC501855	XM_577270.1	XM_577270.1		501855	62659379	XM_577270.1	LOC501855	XP_577270.1	ILMN_1357327	0005340037	S	989	CCTGAAGCAGCAGAGGAAGCTGGTGTGTCTGACTGAGGCCCAATACAATG					PREDICTED: Rattus norvegicus similar to ENSANGP00000028051 (LOC501855), mRNA.					
Rattus norvegicus	RefSeq	GI_62644204-S	ILMN_64437	SLC25A24_PREDICTED	XM_227597.4	XM_227597.4		310791	109465463	XM_227597.4	Slc25a24_predicted	XP_227597.4	ILMN_1352657	0003140739	S	1553	AGCCTTTGCTTTTCCACGATGACCGAGGCTGTAGTGCCCCCCAGTGACTC	2	+	204758834-204758883	2q34	PREDICTED: Rattus norvegicus solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 (predicted) (Slc25a24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758049-S	ILMN_263947	PIAS2	NM_053337.1	NM_053337.1		83422	16758049	NM_053337.1	Pias2	NP_445789.1	ILMN_1370272	0002120519	S	1637	CAGCCATCTTCTGTAAGGGTGCCCAGTGTGACTTCAGTTGATCCTGCTGC	18	+	74123585-74123634	18q12.3	Rattus norvegicus protein inhibitor of activated STAT 2 (Pias2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The synthesis of RNA on a template of DNA [goid 6351] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of dendrite morphogenesis [goid 50775] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647416-S	ILMN_65846	LOC500176	XM_575528.1	XM_575528.1		500176	62647416	XM_575528.1	LOC500176	XP_575528.1	ILMN_1352299	0003870358	S	200	GCTCCTAGGCAGCTCATACATTACACATCTACACTAGTGTCAGGCACCCC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC500176), mRNA.					
Rattus norvegicus	RefSeq	GI_62652425-S	ILMN_68723	TAF2	XM_343241.3	XM_343241.3		170844	109480773	XM_343241.3	Taf2	XP_343242.2	ILMN_1368923	0004200064	S	3514	CCCCAGTGGAGTATGGAACTGTCCCGAAAGGGAGCAGGTAAAGAGCAGCC	7	-	91543878-91543891:91549003-91549038	7q31	PREDICTED: Rattus norvegicus TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf2), mRNA.			Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658672-S	ILMN_62427	LOC363894	XM_344092.2	XM_344092.2		363894	62658672	XM_344092.2	LOC363894	XP_344093.2	ILMN_1361437	0003450100	S	746	CACAAAAATGCGAAAGCACAGCTGGGGTGCAGGGAGGAGGAAGGAGGAGA				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC363894), mRNA.					
Rattus norvegicus	RefSeq	GI_62665720-S	ILMN_62897	LOC309643	XM_228032.3	XM_228032.3		309643	62665720	XM_228032.3	LOC309643	XP_228032.3	ILMN_1354956	0000380484	S	1477	GCCTATGCCAAGCTGATGCTGACGGTGATGACCAAGTACCAGGCCAGCGT				20p12	PREDICTED: Rattus norvegicus similar to Fanconi anemia, complementation group E (LOC309643), mRNA.					
Rattus norvegicus	RefSeq	GI_62645709-S	ILMN_49108	MED19_PREDICTED	XM_230275.4	XM_230275.4		311165	109468382	XM_230275.4	Med19_predicted	XP_230275.2	ILMN_1368391	0006350273	S	478	TCTGGTTTCCGCCTCCATACTGGCCCGTTGCCAGAGCAGTGTCGTCTGAT	3	+	67894839-67894865:67895022-67895044	3q24	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 19 homolog (yeast) (predicted) (Med19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_37591179-S	ILMN_277751	TRMT11	NM_198051.1	NM_198051.1		378794	37591179	NM_198051.1	Trmt11	NP_932168.1	ILMN_1352151	0002120075	S	1397	GCCACGGAAGAACAGTGTAGCCACGAAGGAAAGCTCTGACACTGGCCATC	1	+	27793036-27793074:27793075-27793085	1p11	Rattus norvegicus tRNA methyltransferase 11 homolog (S. cerevisiae) (Trmt11), mRNA.		The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]; The process by which a methyl group is covalently attached to a molecule [goid 32259] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652331-S	ILMN_64014	RGD1561191_PREDICTED	XM_238505.4	XM_238505.4		299979	109480706	XM_238505.4	RGD1561191_predicted	XP_238505.3	ILMN_1360826	0006040082	S	3402	TGCCGCCCCAGAACCTGGAGACCCATCTCACCCTCCTCACAAGACTGTTA	7	+	72869634-72869683	7q22	PREDICTED: Rattus norvegicus similar to BOM (predicted) (RGD1561191_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48040521-A	ILMN_282893	USP19	NM_001001516.1	NM_001001516.1		361190	48040521	NM_001001516.1	Usp19	NP_001001516.1	ILMN_1376869	0005050215	S	3707	ACGAGAGCCAGGTGGTGACACGCTATGCCTATGTGCTCTTCTACCGTCGG	16|NW_047483.1	+	289277-289326		Rattus norvegicus ubiquitin specific peptidase 19 (Usp19), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654718-S	ILMN_48881	LOC501102	XM_580161.1	XM_580161.1		501102	62654718	XM_580161.1	LOC501102	XP_580161.1	ILMN_1353283	0001740286	S	473	CCGAAGTAATTTGAGGGAGTGAAGGAGCAACCTCTCCAAACCGTTGGCAC					PREDICTED: Rattus norvegicus LOC501102 (LOC501102), mRNA.					
Rattus norvegicus	RefSeq	GI_62646785-S	ILMN_58390	LOC368062	XM_347227.3	XM_347227.3		368062	109471692	XM_347227.3	LOC368062	XP_347228.3	ILMN_1374395	0001230594	S	3574	ACTGCATACGTGCTCTCCGGGTGAATCACAGTACAGGGTCTGGGAGGTGG	4	+	27170212-27170261	4q13	PREDICTED: Rattus norvegicus similar to Ankyrin repeat and IBR domain-containing protein 1 (LOC368062), mRNA.					
Rattus norvegicus	RefSeq	GI_62643712-S	ILMN_61153	RGD1304885_PREDICTED	XM_215597.4	XM_215597.4		295171	109465016	XM_215597.4	RGD1304885_predicted	XP_215597.4	ILMN_1363778	0002120167	S	3016	ACAGAGCTGGAACCCGTGGATGATGACTGGATGCGTGGAGAACTAATGGG	2	+	178081403-178081452	2q34	PREDICTED: Rattus norvegicus similar to SH3 domain protein D19 (predicted) (RGD1304885_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664150-S	ILMN_67278	LOC497719	XM_579587.1	XM_579587.1		497719	62664150	XM_579587.1	LOC497719	XP_579587.1	ILMN_1353436	0004610309	S	1894	GAGCCTCTGCAGCCTTCCGGTGTGTGAAGAACCTTTCCCCAAAAGATGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053959 (LOC497719), mRNA.					
Rattus norvegicus	RefSeq	GI_62657362-S	ILMN_274940	ZC3H5_PREDICTED	XM_001081707.1	XM_001081707.1		360663	109492257	XM_001081707.1	Zc3h5_predicted	XP_001081707.1	ILMN_1363834	0003130575	S	3886	GTACAGAGATGCAGTGAATTGGGAAAGCAGAGTGGGCGGAGGGAGGCAGC				10q32.3	PREDICTED: Rattus norvegicus zinc finger CCCH type containing 5 (predicted) (Zc3h5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648703-S	ILMN_298761	RGD1565988_PREDICTED	XR_007538.1	XR_007538.1		366322	109476184	XR_007538.1	RGD1565988_predicted		ILMN_1352994	0006380373	S	720	CGTGGTACATGTGGTGAAAGCAGGTGCCGCCATTGTCGGTGTGAACTTAC				5q13	PREDICTED: Rattus norvegicus similar to Chain A, Bhmt From Rat Liver (predicted) (RGD1565988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34862123-S	ILMN_263419	RGD1561453_PREDICTED	XM_001078588.1	XM_001078588.1		309408	109463691	XM_001078588.1	RGD1561453_predicted	XP_001078588.1	ILMN_1350523	0003290040	S	145	GAGGTGCCGAAGACTGCCCTCATCCACGATGGTCTAGCACGTGGCATATG				1q51	PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (predicted) (RGD1561453_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658088-S	ILMN_47845	LOC363781	XM_344018.2	XM_344018.2		363781	62658088	XM_344018.2	LOC363781	XP_344019.2	ILMN_1364962	0004480162	S	1791	TGTCTGGGACCGGGACTGCCAGAGGACATAAGGCTTGCCCATGACACTGT				11q21	PREDICTED: Rattus norvegicus similar to phosphatidylinositol-specific phospholipase C, X domain containing 2 (LOC363781), mRNA.					
Rattus norvegicus	RefSeq	GI_57114331-S	ILMN_295319	TESSP5	NM_001008864.1	NM_001008864.1		408244	57114331	NM_001008864.1	Tessp5	NP_001008864.1	ILMN_1370457	0006420687	S	704	GGGAGAACCCGTGCTATGGAGATCCTGGGGGACCATTGGCTTGTGAAGTC	8	+	115229785-115229801:115230060-115230092	8q32	Rattus norvegicus testis serine protease 5 (Tessp5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658429-S	ILMN_49790	LOC498140	XM_573350.1	XM_573350.1		498140	62658429	XM_573350.1	LOC498140	XP_573350.1	ILMN_1351641	0003130673	S	1066	GGCCACAGGGAAGAGCAATGAATCACAAGGCAGAAGAACCATCCACATAC				12p11	PREDICTED: Rattus norvegicus similar to Cell division protein kinase 8 (Protein kinase K35) (LOC498140), mRNA.					
Rattus norvegicus	RefSeq	GI_8394120-S	ILMN_296744	PXMP3	NM_017234.1	NM_017234.1		29534	8394120	NM_017234.1	Pxmp3	NP_058930.1	ILMN_1366151	0002100563	S	1086	GTACACTAGGCAGCAGTGGAAAAGAGTGTGCTCTATGTGGAGAGTGGCCC	2	+	98378178-98378227	2q24	Rattus norvegicus peroxisomal membrane protein 3 (Pxmp3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence IEA]; Penetrating at least one phospholipid bilayer of a peroxisomal membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5779] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650907-S	ILMN_277656	MPP5_PREDICTED	XM_001080868.1	XM_001080868.1		314259	109479551	XM_001080868.1	Mpp5_predicted	XP_001080868.1	ILMN_1369669	0000520390	S	4831	TTGGTAGAGTATCGCCTAGCGTGCACAAAACCCTGGCTGTGCAGAAAGCC				6q24	PREDICTED: Rattus norvegicus membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) (predicted) (Mpp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658329-S	ILMN_65261	PEX11C_PREDICTED	XM_213688.4	XM_213688.4		288369	109495006	XM_213688.4	Pex11c_predicted	XP_213688.2	ILMN_1360592	0002470576	S	808	AGACTCAGATTCCCAGAGCGGGAACCACTGGCGGGGGGAGCATCCATAAT	12	+	2709563-2709612	12p12	PREDICTED: Rattus norvegicus peroxisomal biogenesis factor 11c (predicted) (Pex11c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542369-S	ILMN_68500	CDKN1A	NM_080782.3	NM_080782.3		114851	73663897	NM_080782.3	Cdkn1a	NP_542960.1	ILMN_1361122	0006590204	S	440	GACCGGGACATCTCAGGGCCGAAAACGGAGGCAGACCAGCCTAACAGATT	20	+	7384752-7384798:7385381-7385383	20p12	Rattus norvegicus cyclin-dependent kinase inhibitor 1A (p21, Cip1) (Cdkn1a), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence IEA]; Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence IEA]; Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence IEA]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 31668] [evidence ISS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of non-apoptotic programmed cell death, cell death resulting from activation of endogenous cellular processes, by a mechanism other than apoptosis [goid 43071] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of non-apoptotic programmed cell death, cell death resulting from activation of endogenous cellular processes, by a mechanism other than apoptosis [goid 43071] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence IEP]	Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence ISS]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence IEA]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	Waf1; Cip1	Waf1; Cip1
Rattus norvegicus	RefSeq	GI_20302086-S	ILMN_286498	PJA2	NM_138896.1	NM_138896.1		192256	20302086	NM_138896.1	Pja2	NP_620251.1	ILMN_1374719	0005080035	S	4287	GGTGGGGAAGCTGACAAGTTCAGACCCCAGTCTGTCATTTGCTCTTAGCT	9	-	103003089-103003138	9q37	Rattus norvegicus praja 2, RING-H2 motif containing (Pja2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Neurodap1; MGC91486	Neurodap1; MGC91486
Rattus norvegicus	RefSeq	GI_62656628-S	ILMN_60176	RGD1561464_PREDICTED	XM_220750.4	XM_220750.4		303348	109488643	XM_220750.4	RGD1561464_predicted	XP_220750.4	ILMN_1364369	0005670441	S	5305	TCCGCCAGTCGGCAGCTAATCTGTACAATGCTGACAAGAGGATGGCAGTC	10	+	68337608-68337632:68338344-68338368	10q26	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561464_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665042-S	ILMN_292090	ASF1B_PREDICTED	XM_001072446.1	XM_001072446.1		304648	109508656	XM_001072446.1	Asf1b_predicted	XP_001072446.1	ILMN_1360655	0006940040	S	1231	GGCCAGAGGCTACTGCTCCTTCCAATTCTAGTTCTTGGGGGCTCAGGCAA				19q11	PREDICTED: Rattus norvegicus ASF1 anti-silencing function 1 homolog B (S. cerevisiae) (predicted) (Asf1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658699-S	ILMN_276880	SERPINE1	NM_012620.1	NM_012620.1		24617	6981331	NM_012620.1	Serpine1	NP_036752.1	ILMN_2040557	0005390040	A	2743	GCACAGGAAGGTAACGTGAATCTAATTTCATAGCGGGCCGCTCTGCATCC	12	-	20932266-20932315	12q12	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade E, member 1 (Serpine1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IMP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEP]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence IEA]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence TAS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IEA]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Planh; Pai1; RATPAI1A; PAI1A; Pai1aa	Planh; Pai1; RATPAI1A; PAI1A; Pai1aa
Rattus norvegicus	RefSeq	GI_62658699-S	ILMN_276880	SERPINE1	NM_012620.1	NM_012620.1		24617	6981331	NM_012620.1	Serpine1	NP_036752.1	ILMN_1376417	0004920719	S	2628	GGGGGGTGAGGATGAAAGAAACAGCCAGCTCCTGGTCAACCACCTTAGTT	12	-	20932381-20932430	12q12	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade E, member 1 (Serpine1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IMP]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEP]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence IEA]; Any process that modulates the frequency, rate or extent of angiogenesis [goid 45765] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence TAS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IEA]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Planh; Pai1; RATPAI1A; PAI1A; Pai1aa	Planh; Pai1; RATPAI1A; PAI1A; Pai1aa
Rattus norvegicus	RefSeq	GI_54312113-S	ILMN_268558	CLEC4E	NM_001005897.1	NM_001005897.1		450223	54312113	NM_001005897.1	Clec4e	NP_001005897.1	ILMN_1362898	0002810687	S	581	GGAGGACTGTGCCACCATGAGGGACTCTTCAAACCCCAGGAAGAACTGGA	4	-	159902027-159902076	4q42	Rattus norvegicus C-type lectin domain family 4, member e (Clec4e), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Mincle	Mincle
Rattus norvegicus	RefSeq	GI_62718326-S	ILMN_290466	LOC690577	XM_001074852.1	XM_001074852.1		690577	109513513	XM_001074852.1	LOC690577	XP_001074852.1	ILMN_1366005	0000670164	S	1732	AAAGCACCTGAGAGACAACTTGGGGGACCGCCTTTCATTATGTGTGCAAG	Un|NW_047883.1	-	1575492-1575541		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC690577), mRNA.					
Rattus norvegicus	RefSeq	GI_62651393-S	ILMN_61523	LOC299460	XM_234736.2	XM_234736.2		299460	62651393	XM_234736.2	LOC299460	XP_234736.2	ILMN_1354639	0003990193	S	473	GGCACGGGAGCACTGTCCTGCATTTCCAGTTCCCATTGCTGAGTGTTCAA				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC299460), mRNA.					
Rattus norvegicus	RefSeq	GI_6978868-S	ILMN_274626	GABRB2	NM_012957.1	NM_012957.1		25451	6978868	NM_012957.1	Gabrb2	NP_037089.1	ILMN_1372713	0001660139	S	1863	GCTCTCCATCGTTGTTCCTAAGGTTGGCACGCAGTTGGGACAGCACTGTG	10	+	27819507-27819556	10q21	Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit beta 2 (Gabrb2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence TAS]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence TAS]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IMP]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5237] [evidence IMP]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	GARB2	GARB2
Rattus norvegicus	RefSeq	GI_62650276-S	ILMN_262985	MTA3_PREDICTED	XM_001061120.1	XM_001061120.1		298763	109478916	XM_001061120.1	Mta3_predicted	XP_001061120.1	ILMN_1352534	0003290056	S	1291	AAGTACGGAGGTCTGAAAATGCCCACGCAGACGGACGAGGAGAAGGCTCC				6q12	PREDICTED: Rattus norvegicus metastasis associated 3 (predicted) (Mta3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644407-S	ILMN_272942	LOC295452	XR_009150.1	XR_009150.1		295452	109467659	XR_009150.1	LOC295452		ILMN_1359632	0002640309	S	563	CATGACCACAGTCCATGCCATCACTGGCCCCTCTGGAAAGCTGTGGTGTG				2q43	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC295452), mRNA.					
Rattus norvegicus	RefSeq	GI_29789308-S	ILMN_273767	PTPN23	NM_057204.1	NM_057204.1		117552	29789308	NM_057204.1	Ptpn23	NP_476552.1	ILMN_1361243	0005700048	S	4430	CCCTGGAGCTGTTGGCCTCTCTGACTCCAGAAGCATTTTCCCTGGACAGC	8	-	114761643-114761692	8q32	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 23 (Ptpn23), mRNA.	A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ptp-Td14	Ptp-Td14
Rattus norvegicus	RefSeq	GI_62663457-I	ILMN_55967	PRPF4B_PREDICTED	XM_574012.1	XM_574012.1		291078	62663457	XM_574012.1	Prpf4b_predicted	XP_574012.1	ILMN_1376006	0005360538	S	4490	TTGTCTTCAGTGCTGGTAAGTCAGGTAAACTGTAAATAGTTAAAGCAGTC				17p12	PREDICTED: Rattus norvegicus PRP4 pre-mRNA processing factor 4 homolog B (yeast) (predicted) (Prpf4b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659383-S	ILMN_65088	RGD1565743_PREDICTED	XM_577271.2	XM_577271.2		501856	109497921	XM_577271.2	RGD1565743_predicted	XP_577271.2	ILMN_1372680	0004850056	S	196	GGAGCGGTGGGAGGCTGGGGTGGTCACAAAGCTCAGACTTTCAGCATCAA	13	+	49096207-49096256	13q13	PREDICTED: Rattus norvegicus similar to dihydropyridine sensitive calcium channel (predicted) (RGD1565743_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638606-S	ILMN_263906	RGD1561667_PREDICTED	XM_001054195.1	XM_001054195.1		308209	109460827	XM_001054195.1	RGD1561667_predicted	XP_001054195.1	ILMN_1354907	0001660524	S	1201	GCAGGCAAAAGAACCACTGTGGCTGGTCATCTCAGGCCACTACCAATGAC				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1561667_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665052	ILMN_272645	SCOC	NM_001013235.1	NM_001013235.1		364981	61557381	NM_001013235.1	Scoc	NP_001013253.1	ILMN_1650742	0000450524	S	1131	CTAACTCCCAATGTTTTCCCTCCAGATGTGTGTTACCTCTGACCCACAGC	19	+	26395908-26395957	19q11	Rattus norvegicus short coiled-coil protein (Scoc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_16758451-S	ILMN_299405	CYSLTR1	NM_053641.1	NM_053641.1		114099	16758451	NM_053641.1	Cysltr1	NP_446093.1	ILMN_1369071	0000840600	S	265	GGCAAGTGGTTCTTTGGTGACTTTTTGTGCCGCCTCACCACCTATGCCTT	X	-	94802783-94802832	Xq31	Rattus norvegicus cysteinyl leukotriene receptor 1 (Cysltr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a leukotriene to initiate a change in cell activity. Leukotrienes are pharmacologically active substances with a set of three conjugated double bonds; some contain a peptide moiety based on cysteine [goid 4974] [evidence IDA]; Combining with a leukotriene to initiate a change in cell activity. Leukotrienes are pharmacologically active substances with a set of three conjugated double bonds; some contain a peptide moiety based on cysteine [goid 4974] [evidence ISS]; Combining with a leukotriene to initiate a change in cell activity. Leukotrienes are pharmacologically active substances with a set of three conjugated double bonds; some contain a peptide moiety based on cysteine [goid 4974] [evidence IEA]	Cyslt1	Cyslt1
Rattus norvegicus	RefSeq	GI_62655365-S	ILMN_65782	RGD1311447_PREDICTED	XM_343617.3	XM_343617.3		363276	109486317	XM_343617.3	RGD1311447_predicted	XP_343618.1	ILMN_1363125	0002230411	S	257	TCCCACCTTGTGGAATGACCCTATTGAATTGTCCTCGGGTGAAGGTCCCC	9	+	86292424-86292473	9q35	PREDICTED: Rattus norvegicus LOC363276 (predicted) (RGD1311447_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643714-S	ILMN_61240	LRBA_PREDICTED	XM_342271.3	XM_342271.3		361975	109465018	XM_342271.3	Lrba_predicted	XP_342272.3	ILMN_1351559	0000380601	S	8968	CACAGTCTCTGTAAGTACCGAAGCCCTGCCCAGCTTCACCAGAGGCAGAG	2	+	178787295-178787344	2q34	PREDICTED: Rattus norvegicus LPS-responsive beige-like anchor (predicted) (Lrba_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663853-S	ILMN_49963	LOC502137	XM_577589.1	XM_577589.1		502137	62663853	XM_577589.1	LOC502137	XP_577589.1	ILMN_1368646	0004230402	S	338	GCCCCAAAAGTCAGAAAGATGGTGTACCTACCGCCCCAGTCAAACTCCCC					PREDICTED: Rattus norvegicus similar to LRRG00134 (LOC502137), mRNA.					
Rattus norvegicus	RefSeq	GI_62652639-S	ILMN_263815	RGD1565316_PREDICTED	XM_001074890.1	XM_001074890.1		315091	109482467	XM_001074890.1	RGD1565316_predicted	XP_001074890.1	ILMN_1364481	0006590176	S	1374	TCCACGCTACACCAGTCCATTATCAGCTCCCCAGAGATGCTTCGGAGGGC				7q34	PREDICTED: Rattus norvegicus similar to sphingomyelin phosphodiesterase 3, neutral membrane (predicted) (RGD1565316_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654839-S	ILMN_54639	LOC501123	XM_576540.1	XM_576540.1		501123	62654839	XM_576540.1	LOC501123	XP_576540.1	ILMN_1356024	0001990180	S	344	GTACCCTGGAGCGAACCCTACCTTCCAAACAGGTATGTGTGCATGCCAGA					PREDICTED: Rattus norvegicus similar to cDNA sequence BC043098 (LOC501123), mRNA.					
Rattus norvegicus	RefSeq	GI_62655317-S	ILMN_56958	LOC503265	XM_578800.1	XM_578800.1		503265	62655317	XM_578800.1	LOC503265	XP_578800.1	ILMN_1350150	0001450619	S	1121	CATCGAAGCCCACATTCCGAGGAAGAGCTTCGCCCAAAACTTTGTGGTGC					PREDICTED: Rattus norvegicus LOC503265 (LOC503265), mRNA.					
Rattus norvegicus	RefSeq	GI_11693173-S	ILMN_272641	BCAT2	NM_022400.1	NM_022400.1		64203	11693173	NM_022400.1	Bcat2	NP_071795.1	ILMN_1369995	0006770593	S	1357	GACCCATGTAATTTGGACCCCACCTCAGTTCAGCTCGTCCGCGTCCTGGT	1	+	96055435-96055484	1q22	Rattus norvegicus branched chain aminotransferase 2, mitochondrial (Bcat2), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid [goid 6550] [evidence IDA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9081] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence IDA]; The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid [goid 9098] [evidence IDA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IDA]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IEA]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence ISS]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IDA]	Bcatm; BCT2; mBcat	Bcatm; BCT2; mBcat
Rattus norvegicus	RefSeq	GI_62654230-S	ILMN_69432	LOC501047	XM_576462.1	XM_576462.1		501047	62654230	XM_576462.1	LOC501047	XP_576462.1	ILMN_1361902	0003450138	S	938	AGAACACGGAGAGGACGGGCTTGACGGACTGGACGGGGAAGAAAGGGATT				8q32	PREDICTED: Rattus norvegicus similar to alpha-3 collagen type VI (LOC501047), mRNA.					
Rattus norvegicus	RefSeq	GI_62656058-S	ILMN_69182	ZCCHC10	XM_346887.3	XM_346887.3		360524	109488043	XM_346887.3	Zcchc10	XP_346888.2	ILMN_1353577	0006130072	S	1268	CCTGTCTGCTTCTCTAGTGTTGGGACTACAGATACGCCACCATGCTCAGC	10	+	38780733-38780782	10q22	PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 10, transcript variant 2 (Zcchc10), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_29789306-S	ILMN_300234	KIF1B	NM_057200.1	NM_057200.1		117548	29789306	NM_057200.1	Kif1b	NP_476548.1	ILMN_1369664	0004590048	S	5772	CTCTCGCAGATGCCCAAGCCAGCCAAAATACTAAGCGACCCTCCTGAGCC	5	-	166250434-166250450:166250451-166250483	5q36	Rattus norvegicus kinesin family member 1B (Kif1b), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons [goid 8089] [evidence ISS]; The directed movement of a mitochondrion along a microtubule, mediated by motor proteins [goid 47497] [evidence IEA]; The directed movement of a mitochondrion along a microtubule, mediated by motor proteins [goid 47497] [evidence ISS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse [goid 7270] [evidence ISS]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons [goid 8089] [evidence ISS]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654618-A	ILMN_270476	SATB1	NM_001012129.1	NM_001012129.1		316164	58865827	NM_001012129.1	Satb1	NP_001012129.1	ILMN_1376648	0002470504	S	2748	ACTGCTTGGCGGCCCCAGGTGAAGCGTCAAGGATTGTTGGGTAGAATTTG	9	+	3391117-3391166	9q11	Rattus norvegicus SATB homeobox 1 (Satb1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence IEA]; A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin [goid 5720] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence IEA]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The modification of histones by addition of methyl groups [goid 16571] [evidence IEA]; The modification of histones by addition of methyl groups [goid 16571] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; The process whereby a relatively unspecialized T cell acquires specialized features of a mature CD4-positive, alpha-beta T cell [goid 43367] [evidence ISS]; The process whereby a relatively unspecialized T cell acquires specialized features of a mature CD8-positive, alpha-beta T cell [goid 43374] [evidence ISS]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]; An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness [goid 60004] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664973-S	ILMN_269178	LOC367516	XM_001062392.1	XM_001062392.1		367516	109514872	XM_001062392.1	LOC367516	XP_001062392.1	ILMN_1366516	0002190129	S	122	TGTTGAACGCTGGGAGAGAAACATCATCACCTGGAACTGCCCTAAGCAAG				19q11	PREDICTED: Rattus norvegicus hypothetical LOC367516 (LOC367516), mRNA.					
Rattus norvegicus	RefSeq	GI_62644536-I	ILMN_58204	MCOLN3_PREDICTED	XM_575058.1	XM_575058.1		308022	62644536	XM_575058.1	Mcoln3_predicted	XP_575058.1	ILMN_1375519	0003140471	S	2648	CTTAGTCGCTGTAGCTCTCGTTCTCTAACCCCCTTTACCACACGGCACGC				2q44	PREDICTED: Rattus norvegicus mucolipin 3 (predicted) (Mcoln3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653310-S	ILMN_271427	ICAM5_PREDICTED	XM_001077293.1	XM_001077293.1		313785	109484359	XM_001077293.1	Icam5_predicted	XP_001077293.1	ILMN_1352283	0003440706	S	3807	CCCAGGGGCCTCGAAAGCACAGGGGTGGACGTATGTATTGTTCACTCTCT				8q13	PREDICTED: Rattus norvegicus intercellular adhesion molecule 5, telencephalin (predicted) (Icam5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718836-S	ILMN_65683	LOC363433	XM_343755.3	XM_343755.3		363433	109514025	XM_343755.3	LOC363433	XP_343756.3	ILMN_1364278	0005860427	S	853	GGATTGAATAGGCTGTACTTTCACCTCAGCTCTCTCCAACAAGTGTGCAC	Un|NW_047995.1	-	14740-14789		PREDICTED: Rattus norvegicus hypothetical LOC363433 (LOC363433), mRNA.					
Rattus norvegicus	RefSeq	GI_62662742-S	ILMN_263367	LOC682851	XM_001063392.1	XM_001063392.1		682851	109504220	XM_001063392.1	LOC682851	XP_001063392.1	ILMN_1359120	0001770129	S	1010	AAGTCTTGCTCATGGGGTCCCTGATGGGGGCTGATTGTACCCTCTGGGTC					PREDICTED: Rattus norvegicus similar to tripartite motif protein 39 (LOC682851), mRNA.					
Rattus norvegicus	RefSeq	GI_62643218-S	ILMN_59875	YTHDF3_PREDICTED	XM_342217.3	XM_342217.3		361920	109464614	XM_342217.3	Ythdf3_predicted	XP_342218.2	ILMN_1357564	0001170113	S	4336	CCAACAGAATGTTTCTTAACTGCGGGGACCAAAAGGGAGAGACTCTGAGC	2	+	100885912-100885961	2q24	PREDICTED: Rattus norvegicus YTH domain family 3 (predicted) (Ythdf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667381	ILMN_264670	LOC685205	XM_001062796.1	XM_001062796.1		685205	109511202	XM_001062796.1	LOC685205	XP_001062796.1	ILMN_1650865	0004920041	S	327	CGAGATAAAAGAACAACACCCAAACTGGACTGTGGGGCAGGTGGCCAAGG	X	-	136092949-136092998	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC685205), mRNA.					
Rattus norvegicus	RefSeq	GI_62661217-S	ILMN_67271	LOC501964	XM_577392.1	XM_577392.1		501964	62661217	XM_577392.1	LOC501964	XP_577392.1	ILMN_1357189	0000510082	S	713	AAATTTTGGGGAAGGCCTGGAGGACGGGACTCTGCCATGTGAAGCGGCCT					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC501964), mRNA.					
Rattus norvegicus	RefSeq	GI_47577410-S	ILMN_280424	OLR454	NM_001000290.1	NM_001000290.1		295724	47577410	NM_001000290.1	Olr454	NP_001000290.1	ILMN_1359022	0004760400	S	608	TGGCTTCTAACGTCATCACTCCCACTGTACTTATTTTGGCCTCCTACCTC	3	+	68960315-68960364	3q24	Rattus norvegicus olfactory receptor 454 (Olr454), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr454	Olr454
Rattus norvegicus	RefSeq	GI_62653324-S	ILMN_272208	RGD1309188_PREDICTED	XM_001077461.1	XM_001077461.1		315463	109484369	XM_001077461.1	RGD1309188_predicted	XP_001077461.1	ILMN_1371355	0006370746	S	1776	CCAGGGGCTTGTACATAGTAGGCAAGCACTGTACCCCCAGTCCTCTTGGA				8q13	PREDICTED: Rattus norvegicus similar to hypothetical protein BC011833 (predicted) (RGD1309188_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642808-S	ILMN_287879	TMEM174	NM_001024298.1	NM_001024298.1		499516	66730324	NM_001024298.1	Tmem174	NP_001019469.1	ILMN_1349162	0003610368	S	1214	CCCTGCCCCATGCTGGACCTTCCACAGCGGAGTGAATTATCCCAAACAAC	2	-	29257915-29257964	2q12	Rattus norvegicus transmembrane protein 174 (Tmem174), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62717791-S	ILMN_48370	LOC501222	XM_576645.2	XM_576645.2		501222	109512859	XM_576645.2	LOC501222	XP_576645.2	ILMN_1355894	0002260019	S	926	ACTTTTGGAGGGACCCAGAGAAGTGCTGATGCACATCAGTCAAGAGTTGC	Un|NW_047836.1	+	147593-147642		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC501222), mRNA.					
Rattus norvegicus	RefSeq	GI_62638878-S	ILMN_48605	SUV420H2_PREDICTED	XM_218221.4	XM_218221.4		308345	109457969	XM_218221.4	Suv420h2_predicted	XP_218221.3	ILMN_1361143	0005390181	S	2357	GGCCAGGTGTGACCTCATCTTTTTCACGGTGCTATCCCTGGTGCTACTGG	1	-	67816075-67816124	1q12	PREDICTED: Rattus norvegicus suppressor of variegation 4-20 homolog 2 (Drosophila) (predicted) (Suv420h2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302011-S	ILMN_266959	SLC9A5	NM_138858.1	NM_138858.1		192215	20302011	NM_138858.1	Slc9a5	NP_620213.1	ILMN_1349669	0001740619	S	3772	CCCACTAGCAGGAGGCATGGATTGGCTGTTTAGGGGATTACTGGATGGGT	19	+	35184300-35184349	19q11	Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 5 (Slc9a5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IDA]	Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Nhe5	Nhe5
Rattus norvegicus	RefSeq	GI_62650272-S	ILMN_263145	EML4_PREDICTED	XM_001061307.1	XM_001061307.1		313861	109478918	XM_001061307.1	Eml4_predicted	XP_001061307.1	ILMN_1349486	0005080041	S	2692	GCAGACACCAGTTCAACCAAAGCCCCTGCCTCTGCCACTGAAAACGCCAG				6q12	PREDICTED: Rattus norvegicus echinoderm microtubule associated protein like 4 (predicted) (Eml4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377509-S	ILMN_280986	TRPV5	NM_053787.2	NM_053787.2		116469	31377509	NM_053787.2	Trpv5	NP_446239.2	ILMN_1372151	0000610739	S	4750	CGGTCTCAACCCTCATATCAAGGACGTTCAAGACCAATGGATAGACAGCC	4	-	69361089-69361138	4q22	Rattus norvegicus transient receptor potential cation channel, subfamily V, member 5 (Trpv5), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence ISS]	Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	CaT2; Ecac1	CaT2; Ecac1
Rattus norvegicus	RefSeq	GI_62653687-S	ILMN_65511	LOC501000	XM_580147.1	XM_580147.1		501000	62653687	XM_580147.1	LOC501000	XP_580147.1	ILMN_1370546	0006770170	S	1174	TCATAGCCACCCCGATGTGTCTGAAGGCCGGCATCATCAATGCAAGCTGC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC086367 (LOC501000), mRNA.					
Rattus norvegicus	RefSeq	GI_6978772-S	ILMN_276611	DPP4	NM_012789.1	NM_012789.1		25253	6978772	NM_012789.1	Dpp4	NP_036921.1	ILMN_1365066	0006200176	S	4572	TGAAGCGCATGGATCAAGCTACCGCCTCAGAGCACACCAGCACCAGGGGC	3	-	44279312-44279361	3q21	Rattus norvegicus dipeptidylpeptidase 4 (Dpp4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IMP]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that modulates the frequency, rate, or extent of T cell mediated immunity [goid 2709] [evidence IMP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin [goid 33632] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location [goid 51234] [evidence IMP]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IDA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IMP]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IDA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence ISS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	DPPIV	DPPIV
Rattus norvegicus	RefSeq	GI_62652326-S	ILMN_63737	LOC500854	XM_580129.1	XM_580129.1		500854	62652326	XM_580129.1	LOC500854	XP_580129.1	ILMN_1363860	0003390041	S	1071	TGGGTTTGCGAGTTGGACGTGATCGTAGAAGCCTGACTTGGGGCGAAGCG					PREDICTED: Rattus norvegicus LOC500854 (LOC500854), mRNA.					
Rattus norvegicus	RefSeq	GI_62652250-S	ILMN_59808	LOC366906	XM_345828.2	XM_345828.2		366906	62652250	XM_345828.2	LOC366906	XP_345829.2	ILMN_1371238	0005220706	S	1399	GGATCGTATCTATGCTTCTAGGTTCGGATGGGGGAGTAAAGCGATGGACG					PREDICTED: Rattus norvegicus similar to RE12057p (LOC366906), mRNA.					
Rattus norvegicus	RefSeq	GI_34881314	ILMN_281451	LOC302369	XM_001059931.1	XM_001059931.1		302369	109512202	XM_001059931.1	LOC302369	XP_001059931.1	ILMN_1650669	0002350092	S	1207	CTCCTGAAAGACTACCAAGCTTCAACAGCTCTCAGTCCTTTCCCCCACTC				Xq31	PREDICTED: Rattus norvegicus similar to T-box 22 isoform 1 (LOC302369), mRNA.					
Rattus norvegicus	RefSeq	GI_62642498-S	ILMN_67308	TECTB_PREDICTED	XM_217644.4	XM_217644.4		292124	109460270	XM_217644.4	Tectb_predicted	XP_217644.4	ILMN_1353967	0003060113	S	1010	CTGTGACAAACGGAAACGCATGCTACGTGACCAGACAGGGGGTGTCCTGG	1	+	261494209-261494258	1q55	PREDICTED: Rattus norvegicus tectorin beta (predicted) (Tectb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113786-S	ILMN_266862	V1RD26	NM_001008913.1	NM_001008913.1		494264	57113786	NM_001008913.1	V1rd26	NP_001008913.1	ILMN_1349309	0006770292	S	600	CCTGAGAAAACACCACCAGAGACTGCAGCACATTCACACACCCATTCAGG	1	-	67358812-67358861	1q12	Rattus norvegicus vomeronasal 1 receptor, D26 (V1rd26), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50511923-S	ILMN_299820	OLR79	NM_001002270.1	NM_001002270.1		293222	50511923	NM_001002270.1	Olr79	NP_001002270.1	ILMN_1356022	0002900438	S	785	TCCGTCGCTATGGACAGAATGCTTCCCCAATTGTCCACGTGCTTATGGCC	1	+	160874485-160874534	1q32	Rattus norvegicus olfactory receptor gene Olr79 (Olr79), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	MOR6-1	MOR6-1
Rattus norvegicus	RefSeq	GI_62659086-S	ILMN_65263	LOC498195	XM_579794.1	XM_579794.1		498195	62659086	XM_579794.1	LOC498195	XP_579794.1	ILMN_1356268	0004760594	S	25	CAATGAAATGCCAAGATAAAAAAGGAAAACTCCGGCAGCCGTTGAGACGC					PREDICTED: Rattus norvegicus LOC498195 (LOC498195), mRNA.					
Rattus norvegicus	RefSeq	GI_58865399-A	ILMN_267368	FERMT2	NM_001011915.1	NM_001011915.1		289992	58865399	NM_001011915.1	Fermt2	NP_001011915.1	ILMN_1376445	0001660397	S	2988	CATGATGCTCGTGACTTGCCGTGATGCCCTTAACCACAGCCTGGACCGGC	15	-	21358587-21358636	15p14	Rattus norvegicus fermitin family homolog 2 (Drosophila) (Fermt2), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62648498-S	ILMN_280404	GDAP1_PREDICTED	XM_001062260.1	XM_001062260.1		312890	109475981	XM_001062260.1	Gdap1_predicted	XP_001062260.1	ILMN_1364807	0002340132	S	928	CTGGCAGATGTCTCATTGGCTGTCACATTGCATCGGCTGAAGTTCCTGGG				5q11	PREDICTED: Rattus norvegicus ganglioside-induced differentiation-associated-protein 1 (predicted) (Gdap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663550-A	ILMN_300073	ZFP96	NM_153475.1	NM_153475.1		266716	23618902	NM_153475.1	Zfp96	NP_703205.1	ILMN_1376324	0002680458	S	1253	CCTAGTCAGCAGCGGAAGAACCACACCAGCGAGAAGTCCTATAAGTGCAG	17	-	50893314-50893363	17q11	Rattus norvegicus zinc finger protein 96 (Zfp96), mRNA.					
Rattus norvegicus	RefSeq	GI_55741497-S	ILMN_267417	DDX18	NM_001006996.1	NM_001006996.1		308490	55741497	NM_001006996.1	Ddx18	NP_001006997.1	ILMN_1351639	0001990538	S	1890	TAAGGTCCCTCCTTTTGTTGATCTGAATGTGAGCAGCCACGACGGCAAGC	13	-	33588139-33588163:33589364-33589388	13q11	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (Ddx18), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC95311	MGC95311
Rattus norvegicus	RefSeq	GI_17105363-S	ILMN_272878	MYLK2	NM_057209.1	NM_057209.1		117558	17105363	NM_057209.1	Mylk2	NP_476557.1	ILMN_1370749	0004850593	S	2680	AACAGGATGAACTGGCCACAAGGAGTATGAAAGCCGTCGGGGCAGACCCC	3	+	143263788-143263837	3q41	Rattus norvegicus myosin light chain kinase 2 (Mylk2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IMP]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEP]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IMP]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of fast-twitch skeletal muscle contraction [goid 31448] [evidence IMP]; Any process that modulates the frequency, rate or extent of muscle filament sliding [goid 32971] [evidence IEA]; Any process that modulates the frequency, rate or extent of muscle filament sliding [goid 32971] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence IMP]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IMP]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence IMP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IMP]; The process by which the anatomical structures of cardiac muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 55008] [evidence IEA]; The process by which the anatomical structures of cardiac muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 55008] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + (myosin-light-chain) = ADP + (myosin-light-chain) phosphate [goid 4687] [evidence IDA]; Catalysis of the reaction: ATP + (myosin-light-chain) = ADP + (myosin-light-chain) phosphate [goid 4687] [evidence IEA]; Catalysis of the reaction: ATP + (myosin-light-chain) = ADP + (myosin-light-chain) phosphate [goid 4687] [evidence IMP]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a light chain of a myosin complex [goid 32027] [evidence IMP]	Klmc; Mlck	Klmc; Mlck
Rattus norvegicus	RefSeq	GI_62646659-A	ILMN_271088	KLHL7	NM_001012187.1	NM_001012187.1		362303	58865945	NM_001012187.1	Klhl7	NP_001012187.1	ILMN_1376471	0001500487	S	2463	CTGAACAGTGTGAAAAGTGCTGTATGTCCTCATTCCCTACTGCGAGAGCC	4	-	6373686-6373735	4q11	Rattus norvegicus kelch-like 7 (Drosophila) (Klhl7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645834	ILMN_54986	ACOXL_PREDICTED	XM_230581.4	XM_230581.4		296138	109468789	XM_230581.4	Acoxl_predicted	XP_230581.4	ILMN_1649790	0005080398	S	1986	ATATTCCACACACCACCATCCACGCACCAACAGCGGGAACCCCCAACACC	3	+	115686690-115686739	3q36	PREDICTED: Rattus norvegicus acyl-Coenzyme A oxidase-like (predicted) (Acoxl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012403-S	ILMN_290153	RT1-CE4	XM_001076684.1	XM_001076684.1		414783	109514435	XM_001076684.1	RT1-CE4	XP_001076684.1	ILMN_1370764	0006760592	S	647	TGGTGAAGGACACAGCAGCACGGATCACCAGAAACAAGTGGGATCAGGCT				20p12	PREDICTED: Rattus norvegicus RT1 class I, CE4 (RT1-CE4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652023-S	ILMN_276313	LTA4H	NM_001030031.1	NM_001030031.1		299732	71795620	NM_001030031.1	Lta4h	NP_001025202.1	ILMN_1361937	0001050026	S	1808	TCAAGGACCTCGCTGCCTTCGACAAATCCCACGATCAAGCTGTCCGCACC	7	+	30513313-30513316:30514854-30514899	7q13	Rattus norvegicus leukotriene A4 hydrolase (Lta4h), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA]	Catalysis of the reaction: (7E,9E,11Z,14Z)-(5S,6S)-5,6-epoxyicosa-7,9,11,14-tetraenoate + H2O = (6Z,8E,10E,14Z)-(5S,12R)-5,12-dihydroxyicosa-6,8,10,14-tetraenoate [goid 4463] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: (7E,9E,11Z,14Z)-(5S,6S)-5,6-epoxyicosa-7,9,11,14-tetraenoate + H2O = (6Z,8E,10E,14Z)-(5S,12R)-5,12-dihydroxyicosa-6,8,10,14-tetraenoate [goid 4463] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663440-S	ILMN_300729	RGD1564781_PREDICTED	XR_008189.1	XR_008189.1		291065	109505685	XR_008189.1	RGD1564781_predicted		ILMN_1369883	0003840541	S	1048	GCTCTGTGACCAAGTCTCCGCAGGCGTTTAAGTTGGCCCAGTCCAATGGT				17p12	PREDICTED: Rattus norvegicus similar to Alpha enolase (2-phospho-D-glycerate hydro-lyase) (predicted) (RGD1564781_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981133-S	ILMN_281523	KLKB1	NM_012725.1	NM_012725.1		25048	6981133	NM_012725.1	Klkb1	NP_036857.1	ILMN_1361123	0005670750	S	2233	GTAGACACAGTTGCTAAAGACAGCGCCATGCTCAAGCGTGCTTCCTGCCT	16	+	50271921-50271970	16q11	Rattus norvegicus kallikrein B, plasma 1 (Klkb1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC108748; Kalp1; Klk3; KALP15; RATKALP15	MGC108748; Kalp1; Klk3; KALP15; RATKALP15
Rattus norvegicus	RefSeq	GI_62656500-S	ILMN_52989	ANKFY1_PREDICTED	XM_239269.4	XM_239269.4		303292	109488498	XM_239269.4	Ankfy1_predicted	XP_239269.4	ILMN_1349545	0002760577	S	4345	CATCATGTACTCTTCTATCAGTGGTTCTGATGGCCAGCTCAGACTGGACC	10	+	59651380-59651429	10q24	PREDICTED: Rattus norvegicus ankyrin repeat and FYVE domain containing 1 (predicted) (Ankfy1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575996-S	ILMN_274913	OLR1452	NM_001000773.1	NM_001000773.1		405048	47575996	NM_001000773.1	Olr1452	NP_001000773.1	ILMN_1360598	0006220347	S	684	AGAAGCCCGCAAGAAGACCTTTGCCACCTGCTGCTCGCATTTGACAGTGG	10	+	44946060-44946109	10q22	Rattus norvegicus olfactory receptor 1452 (Olr1452), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1452	Olr1452
Rattus norvegicus	RefSeq	GI_62660183-S	ILMN_52131	LOC364111	XM_577310.1	XM_577310.1		364111	62660183	XM_577310.1	LOC364111	XP_577310.1	ILMN_1359419	0006040154	S	3000	TGGCACCACAGCAATGGGCGGAAGACGGCCAAAGGCGCATTAGCAGATGA				14p22	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (LOC364111), mRNA.					
Rattus norvegicus	RefSeq	GI_31542334-S	ILMN_264575	CACNA2D1	NM_012919.2	NM_012919.2		25399	31542334	NM_012919.2	Cacna2d1	NP_037051.2	ILMN_1366030	0001660195	S	3820	GGGAGTTCGCTGTTGCACTGTTGGAGATTACGTGGAAAAGGCTCCCCCAC	4	-	15139970-15140019	4q11	Rattus norvegicus calcium channel, voltage-dependent, alpha2/delta subunit 1 (Cacna2d1), transcript variant 1, mRNA.	A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IMP]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence TAS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence ISS]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IMP]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15270] [evidence ISS]	CCHLA2; Cacna2; DHSCCA	CCHLA2; Cacna2; DHSCCA
Rattus norvegicus	RefSeq	GI_62658398-S	ILMN_70399	LOC363865	XM_344072.2	XM_344072.2		363865	62658398	XM_344072.2	LOC363865	XP_344073.2	ILMN_1370609	0006660368	S	432	GGTGAACTCCAGGTTGCTCTCCTGGACTGCCGTGAAGATAGCGTGACTTC					PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (LOC363865), mRNA.					
Rattus norvegicus	RefSeq	GI_62654606-S	ILMN_66335	LOC501085	XM_576497.1	XM_576497.1		501085	62654606	XM_576497.1	LOC501085	XP_576497.1	ILMN_1356284	0006650068	S	0	CTAACTCCTAGGTCTGCTTCTGCCCTTGAGGTATCCAGGTACCATTGTGC					PREDICTED: Rattus norvegicus similar to Sulfotransferase K1 (rSULT1C2) (LOC501085), mRNA.					
Rattus norvegicus	RefSeq	GI_12711691-S	ILMN_280562	DPYSL5	NM_023023.1	NM_023023.1		65208	12711691	NM_023023.1	Dpysl5	NP_075412.1	ILMN_1364428	0001780097	S	4581	TTGACCCAGAAACCACAGAACCACAAGGAAGCCAAACCCCCTCCAGCTGC	6	-	25558186-25558235	6q14	Rattus norvegicus dihydropyrimidinase-like 5 (Dpysl5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds [goid 16810] [evidence IEA]	Crmp5; Ulip6	Crmp5; Ulip6
Rattus norvegicus	RefSeq	GI_62663357-S	ILMN_60928	FGD3_PREDICTED	XM_341505.3	XM_341505.3		361223	109504688	XM_341505.3	Fgd3_predicted	XP_341506.3	ILMN_1355937	0005890152	S	2258	AATATAACAGTGCCTGACCCCGAGGAGGGGCTGGAGGCTGGGTATGTGTG	17	+	21342563-21342612	17p14	PREDICTED: Rattus norvegicus FYVE, RhoGEF and PH domain containing 3 (predicted) (Fgd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21245087-S	ILMN_294368	LY6B	NM_139257.1	NM_139257.1		246138	21245087	NM_139257.1	Ly6b	NP_640350.1	ILMN_1350759	0003140735	S	607	TTCAGAGGGGGGATTGAGTGTGGAACACCTTGTTGCAACTCTATAGCCAC	7	-	113306252-113306301	7q34	Rattus norvegicus lymphocyte antigen 6 complex, locus B (Ly6b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62651911	ILMN_65774	LOC503110	XM_578630.1	XM_578630.1		503110	62651911	XM_578630.1	LOC503110	XP_578630.1	ILMN_1650508	0003450441	S	276	CTAGTTCTACACACGAGCTGCTTCCACAGCACGGCACCTGTACCTCCGTG					PREDICTED: Rattus norvegicus similar to ribosomal protein S19 (LOC503110), mRNA.					
Rattus norvegicus	RefSeq	GI_62653275-S	ILMN_267710	LOC686725	XM_001075418.1	XM_001075418.1		686725	109484314	XM_001075418.1	LOC686725	XP_001075418.1	ILMN_1353749	0001990286	S	2201	TGTCTCACCTAGACCTGAGGAAGCTCCAATAAGTACCTGCCAGTGGTGCC					PREDICTED: Rattus norvegicus hypothetical protein LOC686725 (LOC686725), mRNA.					
Rattus norvegicus	RefSeq	GI_16758375-S	ILMN_277179	PTPRR	NM_053594.1	NM_053594.1		94202	16758375	NM_053594.1	Ptprr	NP_446046.1	ILMN_1351871	0000430484	S	3320	TGGTTTCTCTCTCCCAGTAAGAAGCAGGTGCCTTTGGGGATGCTCCAACC	7	+	55612701-55612750	7q22	Rattus norvegicus protein tyrosine phosphatase, receptor type, R (Ptprr), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence TAS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pcptp1	Pcptp1
Rattus norvegicus	RefSeq	GI_62666005-S	ILMN_275127	RGD1307879_PREDICTED	XM_001058252.1	XM_001058252.1		294400	109510151	XM_001058252.1	RGD1307879_predicted	XP_001058252.1	ILMN_1350074	0002680273	S	1143	TGAGGACCTTTTCTCCGCCCTCCGGCAGTATGCAGCTTGTGAACAGCGTC				20q11	PREDICTED: Rattus norvegicus similar to hypothetical protein D10Ertd438e (predicted) (RGD1307879_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718431-S	ILMN_59796	LOC501395	XM_576807.1	XM_576807.1		501395	62718431	XM_576807.1	LOC501395	XP_576807.1	ILMN_1349753	0006370692	S	527	CAAGACACAAACCAGGGCAAGATCTCCCTTGGAGAGAAGTGCTACAGGAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501395), mRNA.					
Rattus norvegicus	RefSeq	GI_62079152-S	ILMN_278016	LOC363060	NM_001014209.1	NM_001014209.1		363060	62079152	NM_001014209.1	LOC363060	NP_001014231.1	ILMN_1370198	0006900671	S	1204	GTGGCTACTAGCACATTCCCACCATGCCCAGACCAGTCAGTAGGTTTCAA	8	+	53863362-53863411	8q23	Rattus norvegicus similar to RIKEN cDNA 1600029D21 (LOC363060), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62649839-S	ILMN_289904	SRRM1_PREDICTED	XM_001069368.1	XM_001069368.1		313620	109477500	XM_001069368.1	Srrm1_predicted	XP_001069368.1	ILMN_1374453	0004730440	S	2749	GCGGCAGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAGCTGAAGATGA				5q36	PREDICTED: Rattus norvegicus serine/arginine repetitive matrix 1 (predicted) (Srrm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114299-S	ILMN_281082	USP11	NM_001008861.2	NM_001008861.2		408217	76443680	NM_001008861.2	Usp11	NP_001008861.2	ILMN_1358251	0002760181	S	2295	CTCCTGCAAGCAGCACCAGCTAGCCACTAAGAAACTGGACCTCTGGATGC	X	-	12891921-12891970	Xq12	Rattus norvegicus ubiquitin specific peptidase 11 (Usp11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence TAS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence TAS]; Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Uhx1; MGC105909	Uhx1; MGC105909
Rattus norvegicus	RefSeq	GI_62639592-S	ILMN_266407	RGD1566413_PREDICTED	XM_001080337.1	XM_001080337.1		499140	109461809	XM_001080337.1	RGD1566413_predicted	XP_001080337.1	ILMN_1355493	0000780601	S	332	CGTAGCTTTGGGGATGGGGATAAGGATTCAGTGTCAAGAGGCCGAGTCAC				1q22	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33839 (predicted) (RGD1566413_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656398-S	ILMN_64380	LOC363564	XM_343875.2	XM_343875.2		363564	62656398	XM_343875.2	LOC363564	XP_343876.2	ILMN_1369772	0006860164	S	219	GGCTTCACCACCGTAGCGGAGTCAGGAGTGTGTGAGACATTAAGGAGAAG					PREDICTED: Rattus norvegicus similar to putative actin (LOC363564), mRNA.					
Rattus norvegicus	RefSeq	GI_62658836-S	ILMN_291354	GTF2H3	NM_001024236.1	NM_001024236.1		288651	66730450	NM_001024236.1	Gtf2h3	NP_001019407.1	ILMN_1364426	0002120341	S	1594	AGGCACAGCCTTCCATCTCAGCACTCAGGGAGCCCAGACAAGTGCATCAC	12	-	33122079-33122128	12q15	Rattus norvegicus general transcription factor IIH, polypeptide 3 (Gtf2h3), mRNA.	A complex that contains kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3p, Tfb1p, Tfb2p, Ssl1p and Tfb4p), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of XPD, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB [goid 439] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any function that supports basal (unregulated) transcription of genes by core RNA polymerase II. Five general transcription factors are necessary and sufficient for such basal transcription in yeast: TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBF) [goid 16251] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649590-A	ILMN_298258	OXCT2A	NM_001012221.1	NM_001012221.1		366463	58866009	NM_001012221.1	Oxct2a	NP_001012221.1	ILMN_1376857	0004120333	S	1513	CGTTGGACGAGGTTAAGGCCACCACTGGCTGTTCGTTTAAGGTGTGCCCC	5	+	142433771-142433820	5q36	Rattus norvegicus 3-oxoacid CoA transferase 2A (Oxct2a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Ketone bodies can be used as an energy source as an alternative to glucose. Utilization of ketone bodies in peripheral tissues involves conversion of acetoacetate to acetoacetyl-CoA, which is then converted to two molecules of acetyl-CoA [goid 46952] [evidence IEA]	Catalysis of the transfer of a coenzyme A (CoA) group from one compound (donor) to another (acceptor) [goid 8410] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34876776-S	ILMN_47751	LOC501159	XM_576583.1	XM_576583.1		501159	62655177	XM_576583.1	LOC501159	XP_576583.1	ILMN_1350617	0001570026	S	506	CTCAGGGGACAACAGATGCTGGAGAGGATGTGGAGGAAGAGGAACACTCC					PREDICTED: Rattus norvegicus similar to LRRGT00155 (LOC501159), mRNA.					
Rattus norvegicus	RefSeq	GI_62655946-S	ILMN_63389	LOC360509	XM_340783.2	XM_340783.2		360509	62655946	XM_340783.2	LOC360509	XP_340784.2	ILMN_1370503	0005130008	S	7707	CCTTTACCAAATCATGTACTCCTCTCCACCAGTACCCAGCCCAAGCCTTC				10q12	PREDICTED: Rattus norvegicus similar to HCH (LOC360509), mRNA.					
Rattus norvegicus	RefSeq	GI_62649941-S	ILMN_55280	CROCC_PREDICTED	XM_233603.4	XM_233603.4		313663	109475744	XM_233603.4	Crocc_predicted	XP_233603.4	ILMN_1373614	0000630152	S	5940	GCAGATCCAACATTTAGAGGCACAGGTGGTGGAAGTCCTGGAGCGGAACC	5	-	159876583-159876614:159877064-159877081	5q36	PREDICTED: Rattus norvegicus ciliary rootlet coiled-coil, rootletin (predicted) (Crocc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718159-S	ILMN_68627	LOC501304	XM_576717.1	XM_576717.1		501304	62718159	XM_576717.1	LOC501304	XP_576717.1	ILMN_1365691	0006650408	S	980	CCTGGGTATCTGGGACCTGGTAGAGTTAGTGGGACTTGGGAGTAGGAATG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501304), mRNA.					
Rattus norvegicus	RefSeq	GI_58331131-S	ILMN_272945	GSTA3	NM_031509.2	NM_031509.2		24421	58331131	NM_031509.2	Gsta3	NP_113697.1	ILMN_1366614	0006770059	S	1114	TCAGATATTACTTTGAATCTCAATAAAAACTTCGCAAGCTTCTTAAAAAA				9q13	Rattus norvegicus glutathione S-transferase A3 (Gsta3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Gsta5; MGC112704; Gsta1; Yc1	Gsta5; MGC112704; Gsta1; Yc1
Rattus norvegicus	RefSeq	GI_62658436-S	ILMN_267577	RGD1309707_PREDICTED	XM_001071299.1	XM_001071299.1		288469	109496589	XM_001071299.1	RGD1309707_predicted	XP_001071299.1	ILMN_1368873	0002810010	S	2149	TGGCAGACAGCAACATCGTCAGGTGGTTCTGGCAGGCGGTGGAGACCTTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930431E10 (predicted) (RGD1309707_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865813-A	ILMN_266901	TYMP	NM_001012122.1	NM_001012122.1		315219	58865813	NM_001012122.1	Tymp	NP_001012122.1	ILMN_1376967	0004590181	S	1383	AGCAGTCAGCAGCGCCGCACTCTTCTGGGGGCTCTCGTGCTGTCAGATCG	7	-	127668283-127668332	7q34	Rattus norvegicus thymidine phosphorylase (Tymp), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The chemical reactions and pathways involving pyrimidine bases, 1,3-diazine, organic nitrogenous bases [goid 6206] [evidence IEA]; The chemical reactions and pathways involving any pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside) [goid 6213] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: thymidine + phosphate = thymine + 2-deoxy-D-ribose 1-phosphate [goid 9032] [evidence IEA]	MGC108801	MGC108801
Rattus norvegicus	RefSeq	GI_56090460-S	ILMN_289116	ABHD14B	NM_001007664.1	NM_001007664.1		300983	56090460	NM_001007664.1	Abhd14b	NP_001007665.1	ILMN_1350748	0002120180	S	1495	GCCCATTTCCTGCTCTGAGGTTTGGGAGTGGGATAGGGAGACCGACTACG	8	+	111596286-111596335	8q32	Rattus norvegicus abhydrolase domain containing 14b (Abhd14b), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC93766	MGC93766
Rattus norvegicus	RefSeq	GI_62639216-S	ILMN_281477	RGD1307554_PREDICTED	XM_001072428.1	XM_001072428.1		292739	109461500	XM_001072428.1	RGD1307554_predicted	XP_001072428.1	ILMN_1372955	0003990670	S	1190	GTCGACGGTGGCGGCGAACCTGTAAAGACTGTTAGCTGCCTTCCAATCCC				1q21	PREDICTED: Rattus norvegicus similar to CG16812-PA (predicted) (RGD1307554_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648468-S	ILMN_47824	LOC500374	XM_575732.1	XM_575732.1		500374	62648468	XM_575732.1	LOC500374	XP_575732.1	ILMN_1356003	0001740056	S	393	GGTGCCCAGTGTGATGTCCAGATGACCCAGTCTCCGTCTTATCTTGCTGC					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC500374), mRNA.					
Rattus norvegicus	RefSeq	GI_62665435-A	ILMN_281993	ABCB10	NM_001012166.1	NM_001012166.1		361439	58865903	NM_001012166.1	Abcb10	NP_001012166.1	ILMN_1376292	0004730647	S	1982	CCAGGAGGCGCTTGACCGGCTGATGGAGGGAAGAACCGTGTTGATCATAG	19	-	54152828-54152877	19q12	Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 10 (Abcb10), nuclear gene encoding mitochondrial protein, mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	MGC109142	MGC109142
Rattus norvegicus	RefSeq	GI_34853669-S	ILMN_161816	LMX1B	XM_342419.2	XM_342419.2		114501	62644964	XM_342419.2	Lmx1b	XP_342420.2	ILMN_2039470	0001340386	S	871	CAGCGGCTGGGCCAAGAGGTTCTGTCAAGCCGCATGGAGGGCATGATGGC	3	-	12572611-12572645:12574195-12574209	3p11	PREDICTED: Rattus norvegicus LIM homeobox transcription factor 1 beta, transcript variant 2 (Lmx1b), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638271-S	ILMN_63891	RGD1565892_PREDICTED	XM_577675.2	XM_577675.2		502213	109457496	XM_577675.2	RGD1565892_predicted	XP_577675.2	ILMN_1371156	0001940435	S	2057	TGAGCTCCTTGGCTCTGGGGAGCTTCACTGTGGCTTTCTTGGCTAGGAAC	1	+	1021646-1021695	1p13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1565892_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666238-S	ILMN_64575	LOC502467	XM_577947.1	XM_577947.1		502467	62666238	XM_577947.1	LOC502467	XP_577947.1	ILMN_1353490	0002320739	S	424	AGCTGGGCCTGAGGACAGGTTTACCAAGTGGAGGGTTACAGCCATTCCCT				20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502467), mRNA.					
Rattus norvegicus	RefSeq	GI_62638326-S	ILMN_66667	LOC498985	XM_574275.1	XM_574275.1		498985	62638326	XM_574275.1	LOC498985	XP_574275.1	ILMN_1357017	0004200605	S	2064	TCCACCGCCATCACCCTACCCCATTGGATGGGCATTGGAAAACTTGACCC				1p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E430004N04 gene (LOC498985), mRNA.					
Rattus norvegicus	RefSeq	GI_62645407-I	ILMN_57378	PEX16_PREDICTED	XM_575176.1	XM_575176.1		311203	62645407	XM_575176.1	Pex16_predicted	XP_575176.1	ILMN_1375330	0001940484	S	118	TTCTGGGCCTACGCTACCAGGAGTACGTGACTCGTCATCCAGCCGCCACG				3q24	PREDICTED: Rattus norvegicus peroxisome biogenesis factor 16 (predicted) (Pex16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666481-S	ILMN_55322	LOC298340	XM_233305.3	XM_233305.3		298340	62666481	XM_233305.3	LOC298340	XP_233305.2	ILMN_1364698	0002350164	S	2651	GGCCCGGGGAGATTGCTCAGTGACAGGAGTAATGGCTCTTGCAGAATACG				Xq12	PREDICTED: Rattus norvegicus similar to colonic system B0+ amino acid transporter (LOC298340), mRNA.					
Rattus norvegicus	RefSeq	GI_62642827-S	ILMN_63016	BIRC1B	XM_226742.4	XM_226742.4		191568	109464315	XM_226742.4	Birc1b	XP_226742.4	ILMN_1357286	0000580301	S	4162	ACTGTGCACTGGAGGTGGGTGGTGCCGTTCTCTCCTGTCATTCAGAAGTG	2	-	31167122-31167171	2q12	PREDICTED: Rattus norvegicus baculoviral IAP repeat-containing 1b (Birc1b), mRNA.					
Rattus norvegicus	RefSeq	GI_9507166-S	ILMN_281039	SYNGR1	NM_019166.1	NM_019166.1		29205	9507166	NM_019166.1	Syngr1	NP_062039.1	ILMN_1356224	0004760711	S	412	AAGTCTCCAAGCCCAAGGACAACCCTCTGAACGAAGGGACAGACGCAGCC	7	+	118347018-118347067	7q34	Rattus norvegicus synaptogyrin 1 (Syngr1), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IDA]			
Rattus norvegicus	RefSeq	GI_62658634-S	ILMN_60634	LOC360782	XM_341049.2	XM_341049.2		360782	62658634	XM_341049.2	LOC360782	XP_341050.2	ILMN_1360096	0001580136	S	1621	TGAGAACACTCCCCGTGGGGAAGCTCGGGTGAAACTTGTCCTGGACCACT					PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (LOC360782), mRNA.					
Rattus norvegicus	RefSeq	GI_62661646-S	ILMN_53864	LOC498536	XM_573807.1	XM_573807.1		498536	62661646	XM_573807.1	LOC498536	XP_573807.1	ILMN_1359713	0006100066	S	1773	TGTTACATCAGTAGAGGCAAATCTAAACACAGGCCATGAGACAATTCCGG					PREDICTED: Rattus norvegicus similar to establishment of cohesion 1 homolog 2 (LOC498536), mRNA.					
Rattus norvegicus	RefSeq	GI_62646021-S	ILMN_64523	LOC499910	XM_580031.1	XM_580031.1		499910	62646021	XM_580031.1	LOC499910	XP_580031.1	ILMN_1358510	0002690603	S	1111	CCAGGGTCCCAGAAAGCCTTTTTCTCCGCATTCAAATTCAGTGGTCAGCC					PREDICTED: Rattus norvegicus LOC499910 (LOC499910), mRNA.					
Rattus norvegicus	RefSeq	GI_20376815-S	ILMN_265156	GRIN3B	NM_133308.2	NM_133308.2		170796	20376815	NM_133308.2	Grin3b	NP_579842.2	ILMN_1371703	0001340538	S	2707	AAGATCCACCGAGCCCTCAATACAGGACCACCCGAGGGGCAACAGGAGAG	7	-	11244311-11244360	7q11	Rattus norvegicus glutamate receptor, ionotropic, N-methyl-D-aspartate 3B (Grin3b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; The process by which a protein is incorporated into a biological membrane [goid 51205] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IDA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IDA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA]	NR3B; NMDAR3B	NR3B; NMDAR3B
Rattus norvegicus	RefSeq	GI_62649203-S	ILMN_62767	LOC502964	XM_578469.1	XM_578469.1		502964	62649203	XM_578469.1	LOC502964	XP_578469.1	ILMN_1350337	0004810019	S	132	GTGGCCCAAACAGGATACCCCTTGCTACAAACAGCTCCCCTGATGCTGGA				5q32	PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (LOC502964), mRNA.					
Rattus norvegicus	RefSeq	GI_37497104-S	ILMN_267924	SH3BP4	NM_022693.2	NM_022693.2		64634	37497104	NM_022693.2	Sh3bp4	NP_073184.2	ILMN_1364633	0001780075	S	3145	CATTTACCAGCCATGCCCAGGAGGGACTGAGGACTTTGACTCTCTTCCCC	9	+	88243158-88243207	9q35	Rattus norvegicus SH3-domain binding protein 4 (Sh3bp4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MAGI	MAGI
Rattus norvegicus	RefSeq	GI_34882493-S	ILMN_271338	LOC689083	XM_001069448.1	XM_001069448.1		689083	109513300	XM_001069448.1	LOC689083	XP_001069448.1	ILMN_1355069	0002970497	S	227	GAGAACTGGACCTAACTACCAAAGAGAGAAATGAGCTGACAGATCCCCTC	Un|NW_047875.1	-	104797-104846		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC689083), mRNA.					
Rattus norvegicus	RefSeq	GI_62641950-S	ILMN_66579	SIRT3_PREDICTED	XM_215124.4	XM_215124.4		293615	109459583	XM_215124.4	Sirt3_predicted	XP_215124.4	ILMN_1354765	0003120181	S	948	AGATGTGGTCCAGCTAGGGGATGTAGTCCAGGGTGTGGAAAGGCTGGTGG	1	-	201022665-201022714	1q41	PREDICTED: Rattus norvegicus sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae) (predicted) (Sirt3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651448-S	ILMN_297965	RGD1564328_PREDICTED	XR_007926.1	XR_007926.1		366702	109479785	XR_007926.1	RGD1564328_predicted		ILMN_1359500	0001500601	S	36	GGCCCTGGCCAACGTCATGGTCAAGAAACAGTAGGCCAAAAAGGTGGTCA				6q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1564328_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48374086-S	ILMN_279667	TSG101	NM_181628.2	NM_181628.2		292925	48374086	NM_181628.2	Tsg101	NP_853659.2	ILMN_1349378	0003870047	S	1190	GACTGCGGGCCTTAGTGACCTCTACTGACGTGTGCTATCAGCTGGAGACC	1	-	97445173-97445222	1q22	Rattus norvegicus tumor susceptibility gene 101 (Tsg101), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Addition of a single ubiquitin moiety to a protein [goid 6513] [evidence IDA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation [goid 43162] [evidence ISS]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA];  [goid 30374] [evidence IDA]	Rw	Rw
Rattus norvegicus	RefSeq	GI_62662215-S	ILMN_56432	RGD1561145_PREDICTED	XM_573856.2	XM_573856.2		498580	109503066	XM_573856.2	RGD1561145_predicted	XP_573856.2	ILMN_1368941	0005420524	S	1096	TCCAGTCTATACCAAGGCAGGTGGCTGTGTGGTCCGGGTCTCCTCAGATG	16	+	8339064-8339113	16p16	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561145_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718352-S	ILMN_267917	LOC688644	XM_001067734.1	XM_001067734.1		688644	109513259	XM_001067734.1	LOC688644	XP_001067734.1	ILMN_2040354	0004570220	S	628	GCCAGCCTGACTGATTGAGGTCTTACTCACTTTCTTCTTCAGAAAACAGC	Un|NW_047874.1	-	723790-723839		PREDICTED: Rattus norvegicus hypothetical protein LOC688644 (LOC688644), mRNA.					
Rattus norvegicus	RefSeq	GI_62718173-S	ILMN_267917	LOC688644	XM_001067734.1	XM_001067734.1		688644	109513259	XM_001067734.1	LOC688644	XP_001067734.1	ILMN_1372858	0002370180	S	517	GGAGTCCCCTGCTGACAAACATCCTGACTATTAACAACATTTTTTGGATG	Un|NW_047874.1	-	723901-723950		PREDICTED: Rattus norvegicus hypothetical protein LOC688644 (LOC688644), mRNA.					
Rattus norvegicus	RefSeq	GI_62652792-S	ILMN_268163	EP300	XM_001076610.1	XM_001076610.1		170915	109482523	XM_001076610.1	Ep300	XP_001076610.1	ILMN_2039699	0000020224	S	7211	CAGATGGGGTCTCCTGCTCAGCCCAACCCTATGAGCCCACAGCAGCATAT				7q34	PREDICTED: Rattus norvegicus E1A binding protein p300 (Ep300), mRNA.	A protein complex that possesses histone acetyltransferase activity [goid 123] [evidence IEA]; A protein complex that possesses histone acetyltransferase activity [goid 123] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IC ]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex that possesses histone acetyltransferase activity [goid 123] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The acetylation of the N-terminal lysine of proteins [goid 18076] [evidence ISS]; The acetylation of the N-terminal lysine of proteins [goid 18076] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45862] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The acetylation of the N-terminal lysine of proteins [goid 18076] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence ISS]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IMP]; Interacting selectively with any of the peroxisome proliferator activated receptors, alpha, beta or gamma [goid 42975] [evidence IDA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Catalysis of the transfer of an acetyl group to an acceptor molecule [goid 16407] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654079-S	ILMN_62240	RGD1305403_PREDICTED	XM_236466.3	XM_236466.3		300889	109483779	XM_236466.3	RGD1305403_predicted	XP_236466.1	ILMN_1368525	0003870091	S	1407	GAACCCACCTATCCCAGATATTAGAGCCAGCAACAAACCAGCTTCCCCAC	8	-	94620628-94620677	8q31	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25124 (predicted) (RGD1305403_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663748-S	ILMN_289209	LOC689560	XR_006681.1	XR_006681.1		689560	109505144	XR_006681.1	LOC689560		ILMN_1361942	0006510110	S	14662	GCTTCATCTGTGGGATAGGCAACGACTACTTTGATACAGTGCCGCATGGC	17	+	69542518-69542567	17q12.1	PREDICTED: Rattus norvegicus similar to ryanodine receptor 2, cardiac (LOC689560), mRNA.					
Rattus norvegicus	RefSeq	GI_62663744-S	ILMN_289209	LOC689560	XR_006681.1	XR_006681.1		689560	109505144	XR_006681.1	LOC689560		ILMN_1357968	0001990358	S	8615	CGACACACTGACAGCCAAGGAGAAAGCCAAGGACAGAGAAAAGGCCCAGG	17	+	69408659-69408708	17q12.1	PREDICTED: Rattus norvegicus similar to ryanodine receptor 2, cardiac (LOC689560), mRNA.					
Rattus norvegicus	RefSeq	GI_62663742-S	ILMN_289209	LOC689560	XR_006681.1	XR_006681.1		689560	109505144	XR_006681.1	LOC689560		ILMN_1355630	0006220673	S	387	CTCCACCTCCCGGTCTTCCACCGACAAACTGGCCTTTGATGTTGGCCTTC	17	+	69191300-69191349	17q12.1	PREDICTED: Rattus norvegicus similar to ryanodine receptor 2, cardiac (LOC689560), mRNA.					
Rattus norvegicus	RefSeq	GI_62663746-S	ILMN_289209	LOC689560	XR_006681.1	XR_006681.1		689560	109505144	XR_006681.1	LOC689560		ILMN_1370997	0000540358	S	13982	TGGGAGAGACAGAATCAGCGAGTTACTGGGCATGGATAAGGCTGCACTGG	17	+	69525592-69525641	17q12.1	PREDICTED: Rattus norvegicus similar to ryanodine receptor 2, cardiac (LOC689560), mRNA.					
Rattus norvegicus	RefSeq	GI_62665188-S	ILMN_264822	DDX28_PREDICTED	XM_001076081.1	XM_001076081.1		364995	109508810	XM_001076081.1	Ddx28_predicted	XP_001076081.1	ILMN_1355004	0000670022	S	1459	CTGCAGGATTACATCCACAGAGCAGGAAGGGTGGGTCGAGTGGGCAGTGA				19q12	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 (predicted) (Ddx28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660341-S	ILMN_63847	RGD1564870_PREDICTED	XM_573582.2	XM_573582.2		498349	109499592	XM_573582.2	RGD1564870_predicted	XP_573582.2	ILMN_1370497	0005270195	S	14	CCGGAGCCGTGTCTTCCTGCCGTCTAACCGGAGTCTGTTTGCTTTTAGGG	14	+	33166318-33166367	14p11	PREDICTED: Rattus norvegicus similar to D1Ertd622e protein (predicted) (RGD1564870_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543334-S	ILMN_296099	NPHS2	NM_130828.2	NM_130828.2		170672	31543334	NM_130828.2	Nphs2	NP_570841.2	ILMN_1373938	0003190112	S	1354	GAGAACGCAGTGAAATGGCAGAGAAGACATCCAGCCACACAAGTGGGTCG	13	+	71308591-71308640	13q21	Rattus norvegicus nephrosis 2 homolog, podocin (human) (Nphs2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	podocin; MGC112589	podocin; MGC112589
Rattus norvegicus	RefSeq	GI_16258816-S	ILMN_273548	ATP7A	NM_052803.1	NM_052803.1		24941	16258816	NM_052803.1	Atp7a	NP_434690.1	ILMN_1349553	0007050338	S	4476	TTCCGGGAAGATGACGACACCACACTGTAACAGGCCTTTGGGGATGCTGC	X	+	94249769-94249776	Xq31	Rattus norvegicus ATPase, Cu++ transporting, alpha polypeptide (Atp7a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; A vesicle that mediates transport between the trans-Golgi network and other parts of the cell [goid 30140] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEP]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEA]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis [goid 2082] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis [goid 2082] [evidence ISS]; The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid [goid 6568] [evidence IEA]; The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid [goid 6568] [evidence ISS]; The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6570] [evidence IEA]; The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6570] [evidence ISS]; The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence IEA]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(III) ion stimulus [goid 10041] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; Any process that reduce or remove the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion [goid 10273] [evidence IEA]; Any process that reduce or remove the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion [goid 10273] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The directed movement of copper ions into a cell or organelle [goid 15677] [evidence IEA]; The directed movement of copper ions into a cell or organelle [goid 15677] [evidence ISS]; The modification of peptidyl-lysine [goid 18205] [evidence IEA]; The modification of peptidyl-lysine [goid 18205] [evidence ISS]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence IEA]; Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2) [goid 19430] [evidence ISS]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence IEA]; The process whereby neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem [goid 21702] [evidence ISS]; The progression of a pyramidal neuron from its initial formation to its mature state [goid 21860] [evidence IEA]; The progression of a pyramidal neuron from its initial formation to its mature state [goid 21860] [evidence ISS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence IEA]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence ISS]; The process whereby a relatively unspecialized thymocyte acquires specialized features of a T-helper cell [goid 42093] [evidence IEA]; The process whereby a relatively unspecialized thymocyte acquires specialized features of a T-helper cell [goid 42093] [evidence ISS]; The chemical reactions and pathways involving epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine [goid 42414] [evidence IEA]; The chemical reactions and pathways involving epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine [goid 42414] [evidence ISS]; The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42415] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence IEA]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence IEA]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence ISS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence IEA]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEA]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IDA]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence IEA]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal [goid 48553] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal [goid 48553] [evidence ISS]; Any process that activates, maintains or increases the rate activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal [goid 48554] [evidence IEA]; Any process that activates, maintains or increases the rate activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal [goid 48554] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence IEA]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered [goid 51353] [evidence ISS]; The chemical reactions and pathways resulting in the formation of elastin, a fibrous glycoprotein found in elastic tissues such as the walls of arteries [goid 51542] [evidence IEA]; The chemical reactions and pathways resulting in the formation of elastin, a fibrous glycoprotein found in elastic tissues such as the walls of arteries [goid 51542] [evidence ISS]; The directed movement of copper ions out of a cell or organelle [goid 60003] [evidence IEA]; The directed movement of copper ions out of a cell or organelle [goid 60003] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out) [goid 4008] [evidence ISS]; Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IEA]; Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]; A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase [goid 16532] [evidence IEA]; A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase [goid 16532] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of copper [goid 32767] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Mnk	Mnk
Rattus norvegicus	RefSeq	GI_50811820-S	ILMN_281402	TANC1	NM_001002854.1	NM_001002854.1		311055	50811820	NM_001002854.1	Tanc1	NP_001002854.1	ILMN_1356102	0007040181	S	5542	AAACTAAGGGTGTGCCCCATCTCTACCCGGAAGGCGTCTCTAAGCAGCCG	3	+	41563378-41563427	3q21	Rattus norvegicus tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 (Tanc1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	KIAA1728; Tanc	KIAA1728; Tanc
Rattus norvegicus	RefSeq	GI_57012397-A	ILMN_285162	RT1-CE1	NM_001008832.1	NM_001008832.1		309603	57012397	NM_001008832.1	RT1-CE1	NP_001008832.1	ILMN_1376633	0006040301	S	1016	GGAAGAGAAACACAGGTAGGAAAGGGCAGGGTGGGAAAGGAGACTACGCC	20	-	3595233-3595253:3595416-3595444	20p12	Rattus norvegicus RT1 class I, CE1 (RT1-CE1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1-C/E1	RT1-C/E1
Rattus norvegicus	RefSeq	GI_62647844-S	ILMN_280396	FGD5_PREDICTED	XM_001076619.1	XM_001076619.1		362402	109473938	XM_001076619.1	Fgd5_predicted	XP_001076619.1	ILMN_1361822	0001570102	S	4070	ACCCACTGAAGTGCCTCAAGAACAGGATGGCCAAGGTCTGCGATGGCTGC				4q34	PREDICTED: Rattus norvegicus FYVE, RhoGEF and PH domain containing 5 (predicted) (Fgd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758851-S	ILMN_279647	MMP12	NM_053963.1	NM_053963.1		117033	16758851	NM_053963.1	Mmp12	NP_446415.1	ILMN_1357890	0006380100	S	1234	GGAGGTACGATGTGAGGCAGGAACTCATGGACGCTGCTTACCCCAAGCTG	8	+	4257695-4257695:4258987-4259035	8q11	Rattus norvegicus matrix metallopeptidase 12 (Mmp12), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IEP]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Mme	Mme
Rattus norvegicus	RefSeq	GI_62662188-S	ILMN_295989	SEMA3G	XM_001062426.1	XM_001062426.1		290562	109503806	XM_001062426.1	Sema3g	XP_001062426.1	ILMN_1359069	0006380131	S	2301	GGCTAGAGCTGGGCAGGAAGATGAAGAGCCGGGTGCAGGCTGAGCACAAT				16p16	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G (Sema3g), mRNA.					
Rattus norvegicus	RefSeq	GI_19424313	ILMN_59878	KCNE2	NM_133603.2	NM_133603.2		171138	59709476	NM_133603.2	Kcne2	NP_598287.1	ILMN_1651037	0004050072	S	278	AACACAACAGCCGAACAACAGGCGCTCCAGGCCAGAGTGGATGCCGAGAA	11	+	32289388-32289437	11q11	Rattus norvegicus potassium voltage-gated channel, Isk-related subfamily, gene 2 (Kcne2), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence TAS];  [goid 15459] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	MGC108602; Mirp1	MGC108602; Mirp1
Rattus norvegicus	RefSeq	GI_62643155-S	ILMN_56742	LOC499568	XM_574893.1	XM_574893.1		499568	62643155	XM_574893.1	LOC499568	XP_574893.1	ILMN_1368470	0006450022	S	253	TGGAGGCTACAGGAGGAAGGCAGAGGGGGACTTACAGGTCTTTTGGTTGG					PREDICTED: Rattus norvegicus similar to FLJ20298 protein isoform a (LOC499568), mRNA.					
Rattus norvegicus	RefSeq	GI_62641998-S	ILMN_68962	LOC502380	XM_577855.1	XM_577855.1		502380	62641998	XM_577855.1	LOC502380	XP_577855.1	ILMN_1374292	0005550368	S	1801	GAGGGAGTCCAAACTCTGAAAACACAGATAGTCCTGTTCAGCTGGTGCTG				1q43	PREDICTED: Rattus norvegicus similar to Pfpl protein (LOC502380), mRNA.					
Rattus norvegicus	RefSeq	GI_62658642-S	ILMN_271917	CARD11_PREDICTED	XM_001073551.1	XM_001073551.1		304314	109496647	XM_001073551.1	Card11_predicted	XP_001073551.1	ILMN_1366623	0006380739	S	3563	CCGGGTGAGCGAGAAGAACATCAAACGGTTCAGGAAGCTGCTACCAAGGC					PREDICTED: Rattus norvegicus caspase recruitment domain family, member 11 (predicted) (Card11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083660-S	ILMN_267383	ARL3	NM_022700.1	NM_022700.1		64664	12083660	NM_022700.1	Arl3	NP_073191.1	ILMN_1367248	0007040603	S	665	GAATGTCAACGCAAAGAAGAAGTAAGATGCCGAGGGAGGCGCGGAGCTGC	1	-	251756313-251756338:251756339-251756362	1q54	Rattus norvegicus ADP-ribosylation factor-like 3 (Arl3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62648654	ILMN_263131	LOC502940	XR_007268.1	XR_007268.1		502940	109474648	XR_007268.1	LOC502940		ILMN_1650099	0005550348	S	81	TGCGGGTAGTGCTGCTTGGGATGAAGAGAGACTTGAAGGGGACCAAGTGG	5	-	24457234-24457283	5q13	PREDICTED: Rattus norvegicus pro-histogranin (LOC502940), misc RNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57113832-S	ILMN_270739	V1RD25	NM_001008964.1	NM_001008964.1		494307	57113832	NM_001008964.1	V1rd25	NP_001008964.1	ILMN_1360848	0000380438	S	356	TGCTTCTCCCTGGTAACTGGAGCAGAGTGATACTCAAAGGAAGAGCCCCC	1	+	67407639-67407688	1q12	Rattus norvegicus vomeronasal 1 receptor, D25 (V1rd25), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527336-A	ILMN_270886	OAS1I	NM_001009680.1	NM_001009680.1		304507	57527336	NM_001009680.1	Oas1i	NP_001009680.1	ILMN_1376900	0005690162	S	1063	CTGGGATGTGCCGATGGAGGTTGACGTGCCGTACCAGGAGGATCACTTTT	12	+	36770975-36770987:36772261-36772297	12q16	Rattus norvegicus 2 ' -5 ' oligoadenylate synthetase 1I (Oas1i), mRNA.		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648733-S	ILMN_61074	POU3F2	XM_345510.3	XM_345510.3		29588	109474768	XM_345510.3	Pou3f2	XP_345511.1	ILMN_1370881	0000460092	S	1629	GGTAGCAGGTGTATTCATGGGTTTTGACCTTTGCAAGCGAGTACCCAGGC	5	-	37282050-37282099	5q21	PREDICTED: Rattus norvegicus POU domain, class 3, transcription factor 2 (Pou3f2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence IEA]; The process aimed at the progression of an astrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function [goid 14002] [evidence ISS]; The process aimed at the progression of an astrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function [goid 14002] [evidence IEA]; The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function [goid 14044] [evidence ISS]; The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain [goid 21799] [evidence ISS]; The mitotic division of a basal progenitor giving rise to two neurons [goid 21869] [evidence ISS]; The differentiation of cells that will contribute to the structure and function of the hypothalamus [goid 21979] [evidence ISS]; The differentiation of cells that will contribute to the structure and function of the hypothalamus [goid 21979] [evidence IEA]; The progression of the neurohypophysis over time from its initial formation until its mature state. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation [goid 21985] [evidence ISS]; The progression of the neurohypophysis over time from its initial formation until its mature state. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation [goid 21985] [evidence IEA]; The process whereby neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of Schwann cells in the peripheral nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 22011] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence ISS]; Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron [goid 50770] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62652047-S	ILMN_49607	EEA1_PREDICTED	XM_235064.4	XM_235064.4		314764	109480497	XM_235064.4	Eea1_predicted	XP_235064.4	ILMN_1366622	0006110161	S	4115	CCCTGAACAGAAAGTGGGCAGAAGACAACGAGGTACAGAACTGCATGTCC	7	+	33392504-33392553	7q13	PREDICTED: Rattus norvegicus early endosome antigen 1 (predicted) (Eea1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090406-S	ILMN_273205	GEMIN8	NM_001007756.1	NM_001007756.1		363462	56090406	NM_001007756.1	Gemin8	NP_001007757.1	ILMN_1349584	0002350324	S	914	CAAAGAAAGAGGCCTGTATGCCAACATGGCGGACACAGTCTGTCAGCCAC	X	-	48952231-48952280	Xq21	Rattus norvegicus gem (nuclear organelle) associated protein 8 (Gemin8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex that contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and Unrip proteins; the complex is found in the cytoplasm and in nuclear Gems, and is involved in spliceosomal snRNP assembly in the cytoplasm and in pre-mRNA splicing in the nucleus [goid 32797] [evidence ISS]	The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94189	MGC94189
Rattus norvegicus	RefSeq	GI_62660343-S	ILMN_281791	LOC498350	NM_001017498.1	NM_001017498.1		498350	62945347	NM_001017498.1	LOC498350	NP_001017498.1	ILMN_1356210	0000130390	S	2491	TGGAGTTAGAGGGATTTGGGTTTGTATGTCTCCTGGACCATTTACTGGGC	14	-	33404075-33404124	14p11	Rattus norvegicus similar to testicular haploid expressed gene product isoform 2 (LOC498350), mRNA.					
Rattus norvegicus	RefSeq	GI_57527888-S	ILMN_269615	STXBP1	NM_013038.3	NM_013038.3		25558	57527888	NM_013038.3	Stxbp1	NP_037170.1	ILMN_1359184	0005420452	S	3180	CCCTCTCCAGTGACCCTTTCCCTAGGATGAACCTTAGCAGCCCTGGTTGG	3	-	11762375-11762424	3p11	Rattus norvegicus syntaxin binding protein 1 (Stxbp1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IPI]; The process by which an axon recognizes and binds to a set of cells with which it may form stable connections [goid 7412] [evidence ISS]; Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle [goid 16188] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence ISS]; The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IDA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10746715] [evidence IPI]	Sec1; rbSec1A; ANC18HA; n-sec1; rbSec1; NSEC1A; Munc18-1; rbSec1B	Sec1; rbSec1A; ANC18HA; n-sec1; rbSec1; NSEC1A; Munc18-1; rbSec1B
Rattus norvegicus	RefSeq	GI_62649311-S	ILMN_68292	LOC500513	XM_575875.1	XM_575875.1		500513	62649311	XM_575875.1	LOC500513	XP_575875.1	ILMN_1354455	0004540520	S	2614	GAACTATGCTAGGGCAAAGTCCCCGAGGGTGTGAACCCCAGTGTCCCAAC				5q34	PREDICTED: Rattus norvegicus hypothetical gene supported by BC079057 (LOC500513), mRNA.					
Rattus norvegicus	RefSeq	GI_62645485	ILMN_277969	RGD1560542_PREDICTED	XM_001079607.1	XM_001079607.1		499847	109470430	XM_001079607.1	RGD1560542_predicted	XP_001079607.1	ILMN_1650382	0000050484	S	586	ACCAGAAAGCACAGCATCTCGCCACCACCTCCCTATCCTGGGCCTGCAAA				3q32	PREDICTED: Rattus norvegicus similar to Transmembrane gamma-carboxyglutamic acid protein 4 precursor (Proline-rich Gla protein 4) (predicted) (RGD1560542_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664486-S	ILMN_60384	RGD1560819_PREDICTED	XM_225912.3	XM_225912.3		291577	109506665	XM_225912.3	RGD1560819_predicted	XP_225912.2	ILMN_1370822	0002970164	S	2716	GGGTGCAGGTGGATTCGATACCTCAATACAAGGCTGGGGACTGGAAGATG	18	+	55272950-55272999	18q12.1	PREDICTED: Rattus norvegicus similar to chondroitin sulfate synthase 3 (predicted) (RGD1560819_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641733-S	ILMN_276458	KLC2_PREDICTED	XM_001069844.1	XM_001069844.1		309159	109463367	XM_001069844.1	Klc2_predicted	XP_001069844.1	ILMN_1351538	0000670102	S	2464	CTCGTGGGCTAAAGCTGAAGGGGCAGCCAGTCACCAGAACCTCCATCTGA				1q43	PREDICTED: Rattus norvegicus kinesin light chain 2 (predicted) (Klc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658257-S	ILMN_291415	RGD1564731_PREDICTED	XR_007828.1	XR_007828.1		363824	109494691	XR_007828.1	RGD1564731_predicted		ILMN_1352811	0002320605	S	52	ATAGCACCTCTGTTTGTCTCTGTGAGTGGCGTTGTGACACCCCAGTGGTG				11q23	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1564731_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647412-S	ILMN_65680	LOC500174	XM_575526.1	XM_575526.1		500174	62647412	XM_575526.1	LOC500174	XP_575526.1	ILMN_1356823	0002030717	S	193	GCTCCTGGGCTGCTCATAGGTTACACATCTAGACTAGTGTCAGGCATCCC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain variable region (LOC500174), mRNA.					
Rattus norvegicus	RefSeq	GI_8394123-S	ILMN_57636	RAB10	NM_017359.2	NM_017359.2		50993	61889070	NM_017359.2	Rab10	NP_059055.2	ILMN_2039130	0002190300	S	601	GATATCAGCAGTGGAGGAGGTGTGACGGGCTGGAAGAGCAAATGCTGCTG	6|NW_047768.1	-	12603-12652		Rattus norvegicus RAB10, member RAS oncogene family (Rab10), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IPI]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]	Ac1075	Ac1075
Rattus norvegicus	RefSeq	GI_47576740	ILMN_291709	OLR839	NM_001000415.1	NM_001000415.1		298734	47576740	NM_001000415.1	Olr839	NP_001000415.1	ILMN_1650308	0005910170	S	903	GGATGTGAAGACTGCTGTAAGAGACCTGGCAAGTCACAGATGTCTCACCC	5	-	60301594-60301643	5q22	Rattus norvegicus olfactory receptor 839 (Olr839), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr839	Olr839
Rattus norvegicus	RefSeq	GI_62663673-S	ILMN_62260	LOC498765	XM_574051.1	XM_574051.1		498765	62663673	XM_574051.1	LOC498765	XP_574051.1	ILMN_1360606	0000060619	S	648	GTCCACCCCCAGGAAGTCTGCAAGAGATGGAAGAATTTTGAGAACCAGGG					PREDICTED: Rattus norvegicus similar to Mki67 protein (LOC498765), mRNA.					
Rattus norvegicus	RefSeq	GI_6981195-S	ILMN_292900	MEP1A	NM_013143.1	NM_013143.1		25684	6981195	NM_013143.1	Mep1a	NP_037275.1	ILMN_1366362	0004570497	S	2578	CCTCTGCTACCACATTGACCCCAGTGCTAGAAGCATACCTTACTGGTGTA	9	+	13200753-13200802	9q12	Rattus norvegicus meprin 1 alpha (Mep1a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; An enzyme complex that catalyzes the hydrolysis of protein and peptide substrates, preferentially on carboxyl side of hydrophobic residues [goid 17090] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence NAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648193-S	ILMN_56942	LOC500325	XM_575676.1	XM_575676.1		500325	62648193	XM_575676.1	LOC500325	XP_575676.1	ILMN_1355330	0001500358	S	3814	GGCCCCAGGAGCAGGAGGTTTGGTTAAAGCTCATCCCAGACTCAAAGCTG					PREDICTED: Rattus norvegicus similar to HMT1 hnRNP methyltransferase-like 3 protein (LOC500325), mRNA.					
Rattus norvegicus	RefSeq	GI_56090426-S	ILMN_270687	IFIT3	NM_001007694.1	NM_001007694.1		309526	56090426	NM_001007694.1	Ifit3	NP_001007695.1	ILMN_1367152	0005050059	S	1570	GTGAAGTGATGCATACAGAGAGGAAAGGGCTGGAAAAGCAGGAGCCTTCC	1	+	238575973-238576022	1q52	Rattus norvegicus interferon-induced protein with tetratricopeptide repeats 3 (Ifit3), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC94037	MGC94037
Rattus norvegicus	RefSeq	GI_47577518-S	ILMN_289096	OLR496	NM_001000681.1	NM_001000681.1		404885	47577518	NM_001000681.1	Olr496	NP_001000681.1	ILMN_1367527	0000540138	S	129	GGGCATGATCATCCTGACCATAGTTGACTCCAGGCTGCATACACCCATGT	3	-	69540937-69540986	3q24	Rattus norvegicus olfactory receptor 496 (Olr496), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr496	Olr496
Rattus norvegicus	RefSeq	GI_62649044-S	ILMN_54185	LOC500473	XM_575837.1	XM_575837.1		500473	62649044	XM_575837.1	LOC500473	XP_575837.1	ILMN_1366136	0001580133	S	680	CTGCGTGGATTACTCATTACAGAGTGGAGACTTCTCACCAGGACTCCAGC				5q24	PREDICTED: Rattus norvegicus similar to alpha-2u-globulin (LOC500473), mRNA.					
Rattus norvegicus	RefSeq	GI_62662346-S	ILMN_262410	SH2D4B_PREDICTED	XM_001062584.1	XM_001062584.1		290612	109503849	XM_001062584.1	Sh2d4b_predicted	XP_001062584.1	ILMN_1372929	0003990735	S	1117	GTGGATGCCTCTGGGGACTTCTACAGCTTTCTGGGAGTGGACCCTAACCG				16p14	PREDICTED: Rattus norvegicus SH2 domain containing 4B (predicted) (Sh2d4b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644767-S	ILMN_274564	RGD1564379_PREDICTED	XM_001074520.1	XM_001074520.1		499758	109469446	XM_001074520.1	RGD1564379_predicted	XP_001074520.1	ILMN_1353755	0006110102	S	672	ATGCTGCTGGTCGGGGGACTGGGCTGGTGCTTCATGGTCTTTGTGGACAT				3p13	PREDICTED: Rattus norvegicus RGD1564379 (predicted) (RGD1564379_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799429-S	ILMN_300539	CFB	NM_212466.2	NM_212466.2		294257	56799429	NM_212466.2	Cfb	NP_997631.1	ILMN_1351404	0003450494	S	2448	AGGTGCTGCCCTGGCTAAAGGAGAAGCTCAAAGACGAGGACTTGGGTTTC				20p12	Rattus norvegicus complement factor B (Cfb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence IEA]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence ISS]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Da1-24; Bf; MGC94594	Da1-24; Bf; MGC94594
Rattus norvegicus	RefSeq	GI_62666313-S	ILMN_68491	LOC499477	XM_574800.1	XM_574800.1		499477	62666313	XM_574800.1	LOC499477	XP_574800.1	ILMN_1368282	0000780377	S	400	CTCCCAGGAAGGTGGAGACCTAGGATATTGTGTGGCTGCTGAAAGAGCTC					PREDICTED: Rattus norvegicus similar to Mitochondrial import inner membrane translocase subunit TIM9 B (Fracture callus protein 1) (FxC1) (LOC499477), mRNA.					
Rattus norvegicus	RefSeq	GI_56090336-S	ILMN_263504	TMED5	NM_001007619.1	NM_001007619.1		289883	56090336	NM_001007619.1	Tmed5	NP_001007620.1	ILMN_1370883	0002970025	S	1545	GCTGGCTTCTGCACAGCTGTTGGTCTTGGCAATGCATTCTCACAAGCAGG	14	+	2167005-2167054	14p22	Rattus norvegicus transmembrane emp24 protein transport domain containing 5 (Tmed5), mRNA.	A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]		MGC95001; LRRG00120	MGC95001; LRRG00120
Rattus norvegicus	RefSeq	GI_62641778-S	ILMN_57918	LOC499305	XM_574605.1	XM_574605.1		499305	62641778	XM_574605.1	LOC499305	XP_574605.1	ILMN_1362711	0003990471	S	100	AGCGGCGTTCAGTAGCCAACATGCAGCTCTTTGTCCGCGCCCAGGAACTA					PREDICTED: Rattus norvegicus similar to Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) (LOC499305), mRNA.					
Rattus norvegicus	RefSeq	GI_11968117-S	ILMN_286728	DES	NM_022531.1	NM_022531.1		64362	11968117	NM_022531.1	Des	NP_071976.1	ILMN_1367505	0006860672	S	1962	AGCAGGGGCTGTAAGAGAGAACTGGAAGGTGCTGGATGTGGGAGCAGGAG	9	+	74645295-74645344	9q33	Rattus norvegicus desmin (Des), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IEA]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence ISS]; A type of intermediate filament, typically made up of one or more of the proteins vimentin, desmin, glial fibrillary acidic protein (GFAP), and peripherin. Unlike the keratins, the type III proteins can form both homo- and heteropolymeric IF filaments [goid 45098] [evidence IMP]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758113-S	ILMN_278842	CD93	NM_053383.1	NM_053383.1		84398	16758113	NM_053383.1	Cd93	NP_445835.1	ILMN_1348939	0002320609	S	4618	GTGATGGAAGCCAGCTATAAGTATGTTAGACACGAGCTTTCCAGGACCCC	3	-	137188542-137188591	3q41	Rattus norvegicus CD93 molecule (Cd93), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]	Interacting selectively with the C1q component of the classical complement cascade [goid 1849] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	C1qRp; Ly68	C1qRp; Ly68
Rattus norvegicus	RefSeq	GI_47577380-S	ILMN_286043	OLR441	NM_001000283.1	NM_001000283.1		295712	47577380	NM_001000283.1	Olr441	NP_001000283.1	ILMN_1348884	0000510300	S	753	TGGAACCCTGGCCTACATGTACTTACAGCCTCATTCGGACAATTCCGAGG	3	-	68647139-68647188	3q24	Rattus norvegicus olfactory receptor 441 (Olr441), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr441	Olr441
Rattus norvegicus	RefSeq	GI_62645155-S	ILMN_280868	FIGN_PREDICTED	XM_001055328.1	XM_001055328.1		295649	109469987	XM_001055328.1	Fign_predicted	XP_001055328.1	ILMN_1358090	0007000184	S	2839	GACAACGCTCACCGAGAAGCAAGGTGCAAGCGTGTTGATTTCAGAAGGAC				3q21	PREDICTED: Rattus norvegicus fidgetin (predicted), transcript variant 2 (Fign_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641270-S	ILMN_279431	RGD1305613	NM_001039208.1	NM_001039208.1		361648	85861195	NM_001039208.1	RGD1305613	NP_001034297.1	ILMN_1374856	0000630458	S	2907	GGCAGCCCAGGGAAGAGATGGGTGTCCAGAAATGGGGGTTGTCCTCTCTA	1	-	185455768-185455817	1q36	Rattus norvegicus similar to spinster-like protein (RGD1305613), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC125152	MGC125152
Rattus norvegicus	RefSeq	GI_47576766-S	ILMN_270506	OLR181	NM_001001030.1	NM_001001030.1		405916	47576766	NM_001001030.1	Olr181	NP_001001030.1	ILMN_1366547	0000460605	S	853	CCACCTGCTCTTAACCCTCTTATTTATGGGGTGAGAACCAAACAGATTCG	1	-	162772369-162772418	1q33	Rattus norvegicus olfactory receptor 181 (Olr181), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr181	Olr181
Rattus norvegicus	RefSeq	GI_62647434-S	ILMN_66688	LOC500186	XM_575538.1	XM_575538.1		500186	62647434	XM_575538.1	LOC500186	XP_575538.1	ILMN_1363140	0006510524	S	401	CATTGTGGCTGAGGCAAAAAGACAGGATCACAAAAAGGCCCAGTGGTACC					PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 5 (eIF-5) (LOC500186), mRNA.					
Rattus norvegicus	RefSeq	GI_62667015-S	ILMN_61654	LOC367829	XM_346315.2	XM_346315.2		367829	62667015	XM_346315.2	LOC367829	XP_346316.2	ILMN_2038831	0004850730	S	21	GAGGACAACGACCGAAGTGGAGTGCGATCCATGGCAGGAAACAGGAAAAG				Xq31	PREDICTED: Rattus norvegicus similar to Irx2 protein (LOC367829), mRNA.					
Rattus norvegicus	RefSeq	GI_57527187-S	ILMN_268747	DNAL4	NM_001009666.1	NM_001009666.1		300078	57527187	NM_001009666.1	Dnal4	NP_001009666.1	ILMN_1364188	0003840095	S	1189	AGCTGCATGGCTGAGAGCTAGGGCCTTGGTGTAGAGCGACTTCTCAAAAG	7	-	117999669-117999718	7q34	Rattus norvegicus dynein, axonemal, light chain 4 (Dnal4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence ISS]	MGC105573	MGC105573
Rattus norvegicus	RefSeq	GI_62656859-S	ILMN_269135	COL1A1	XM_001081230.1	XM_001081230.1		29393	109491671	XM_001081230.1	Col1a1	XP_001081230.1	ILMN_1361396	0005900746	S	5526	CCTGACGGTGCTATTTAACAAGGGAGGAGAGAGTGCCAACTCCAGCCTGC				10q31	PREDICTED: Rattus norvegicus procollagen, type 1, alpha 1 (Col1a1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The formation of bone by the replacement of cartilage tissue with mineralized bone [goid 1958] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids [goid 31960] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657120-S	ILMN_274779	LOC680328	XM_001056707.1	XM_001056707.1		680328	109488991	XM_001056707.1	LOC680328	XP_001056707.1	ILMN_1371575	0001450035	S	176	TGCTGTCAAACCACCTGCTGCAGGACTTGCTTCCAACCAAGCTGTGTGAG	10	+	88794765-88794814	10q32.1	PREDICTED: Rattus norvegicus similar to keratin associated protein 9-1 (LOC680328), mRNA.					
Rattus norvegicus	RefSeq	GI_62718386-S	ILMN_56847	LOC367477	XM_346154.2	XM_346154.2		367477	62718386	XM_346154.2	LOC367477	XP_346155.2	ILMN_1360131	0001450609	S	141	AGTCCTGTGCAGGCCCAGAACCTAGGAAAAATGAAATCAGAGGTTTCTGG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC367477), mRNA.					
Rattus norvegicus	RefSeq	GI_62639366-S	ILMN_51612	LOC361546	XM_341832.2	XM_341832.2		361546	62639366	XM_341832.2	LOC361546	XP_341833.2	ILMN_1352376	0004480333	S	1539	TGGGCACAGGCCCAGGTAGCGCTGCAACAGCCATACAAATGAAGAAGCAG					PREDICTED: Rattus norvegicus similar to mKIAA0841 protein (LOC361546), mRNA.					
Rattus norvegicus	RefSeq	GI_56090316-S	ILMN_276388	MFAP3	NM_001007609.1	NM_001007609.1		287299	56090316	NM_001007609.1	Mfap3	NP_001007610.1	ILMN_1351628	0007040168	S	1681	CTGCCCTGGGGAGTGAACATGTGCTGGGCAGATCTTTTAAGTGAGGCACC	10	+	43118578-43118627	10q22	Rattus norvegicus microfibrillar-associated protein 3 (Mfap3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94011	MGC94011
Rattus norvegicus	RefSeq	GI_62638517-S	ILMN_53627	RGD1565064_PREDICTED	XM_574308.2	XM_574308.2		499015	109457726	XM_574308.2	RGD1565064_predicted	XP_574308.2	ILMN_1370796	0006370673	S	1939	GCCCGTGGAGTCAGCAGATTTAGGCATTGGGGATCTAATTCCTGTGGACG	1	-	40824417-40824450:40825871-40825886	1q11	PREDICTED: Rattus norvegicus similar to serine active site containing 1 (predicted) (RGD1565064_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663472-S	ILMN_56979	LOC498738	XM_574015.1	XM_574015.1		498738	62663472	XM_574015.1	LOC498738	XP_574015.1	ILMN_1366778	0002690193	S	708	CCCAGCTCAAAGGACCAATGGCTCCAGACAAGGTCCTGAAGCAGGAATGA					PREDICTED: Rattus norvegicus similar to LRRGT00149 (LOC498738), mRNA.					
Rattus norvegicus	RefSeq	GI_67846051	ILMN_300548	DCUN1D3	NM_001024886.1	NM_001024886.1		309035	67846051	NM_001024886.1	Dcun1d3	NP_001020057.1	ILMN_1530492	0004230180	S	1321	ATATTTTCTACTTTCACCTTTCTCTGCCTTGTATTTGAAAGGGCTCTAAA	1	-	178172547-178172596	1q35	Rattus norvegicus DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) (Dcun1d3), mRNA.				RGD1308893; MGC114527	RGD1308893; MGC114527
Rattus norvegicus	RefSeq	GI_62718336-S	ILMN_54438	LOC501369	XM_576782.2	XM_576782.2		501369	109513516	XM_576782.2	LOC501369	XP_576782.2	ILMN_1350586	0002350402	S	433	GCATCATCTGGTCTCAGAAAGTGCAAGAGAGCTGGAATTGGACACATCCC	Un|NW_047883.1	+	1896457-1896466:1897186-1897225		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501369), mRNA.					
Rattus norvegicus	RefSeq	GI_16758663-S	ILMN_272830	SLC6A9	NM_053818.1	NM_053818.1		116509	16758663	NM_053818.1	Slc6a9	NP_446270.1	ILMN_1357015	0002630348	S	2462	CCCGGGGGCTGTACAGTGTTACTTGTTGGACTGCACCACTCAGCCCTGTT	5	+	138334276-138334325	5q36	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (Slc6a9), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + Na+(out) = amino acid(in) + Na+(in) [goid 5283] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence TAS]; Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + Na+(out) = amino acid(in) + Na+(in) [goid 5283] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16271045] [evidence IPI]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	GLYT-1; Glyt1; GLYT-1b	GLYT-1; Glyt1; GLYT-1b
Rattus norvegicus	RefSeq	GI_6981599-S	ILMN_269718	STX1B2	NM_012700.1	NM_012700.1		24923	6981599	NM_012700.1	Stx1b2	NP_036832.1	ILMN_1353858	0004760609	S	2941	TGGGCCGGGTTGGGCCTGGTGGGACGGGAGAAATAGCAACTAATCCAACA	1	-	187089184-187089233	1q36	Rattus norvegicus syntaxin 1B2 (Stx1b2), mRNA.				Stx1b; Stx2	Stx1b; Stx2
Rattus norvegicus	RefSeq	GI_62642574-S	ILMN_48774	LOC499383	XM_345054.2	XM_345054.2		499383	62642574	XM_345054.2	LOC499383	XP_345055.2	ILMN_1372420	0002450301	S	33	CTCTCCATGTATTCAGGAGTGTACACATTTCTATCCAGCACCTTGAAGTC					PREDICTED: Rattus norvegicus similar to Estrogen receptor (ER) (Estradiol receptor) (ER-alpha) (LOC499383), mRNA.					
Rattus norvegicus	RefSeq	GI_6981605-S	ILMN_275035	ABCC8	NM_013039.1	NM_013039.1		25559	6981605	NM_013039.1	Abcc8	NP_037171.1	ILMN_1366054	0004810671	S	4900	AGTGATGGTCCTGAAGAGGGGCGCGATCCTGGAGTTCGACAAGCCGGAAA				1q22	Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 8 (Abcc8), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.2 subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SUR1 subunit stimulates channel activity [goid 8282] [evidence IMP]; A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.2 subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SUR1 subunit stimulates channel activity [goid 8282] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence IMP]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43268] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence TAS]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IPI]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]	Sur	Sur
Rattus norvegicus	RefSeq	GI_62650367-S	ILMN_272814	ALK	XM_001067235.1	XM_001067235.1		266802	109479029	XM_001067235.1	Alk	XP_001067235.1	ILMN_1353353	0001500048	S	5630	CCCCTGTTCAGGCTGCGCCACTTCCCCTGCGGCAACGTCAACTATGGTTA					PREDICTED: Rattus norvegicus anaplastic lymphoma kinase (Alk), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078744-S	ILMN_285309	ASPN	NM_001014008.1	NM_001014008.1		306805	62078744	NM_001014008.1	Aspn	NP_001014030.1	ILMN_1369408	0002640609	S	1269	CAACCTGCAACGTTTCGCTGCGTTGTTGGCAGAATGAGTGTTCAGCTTGG	17	-	21035805-21035854	17p14	Rattus norvegicus asporin (Aspn), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662829-S	ILMN_292459	RGD1310810	NM_001024883.1	NM_001024883.1		306549	67846039	NM_001024883.1	RGD1310810	NP_001020054.1	ILMN_1357203	0003520577	S	1056	GCAGCTGTGGCCCTACGGAGAAGACACACCCTTCCAAGATGACCTCATGC	16	+	70471476-70471525	16q12.4	Rattus norvegicus similar to RIKEN cDNA 4930444A02 (RGD1310810), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC114531	MGC114531
Rattus norvegicus	RefSeq	GI_62652754-S	ILMN_62330	LOC315145	XM_235493.3	XM_235493.3		315145	62652754	XM_235493.3	LOC315145	XP_235493.3	ILMN_1373252	0000360333	S	2009	CATGGCCTCTTCCCTGCACTAGGAAACGCATCAGACCCTCAGCAGACCTC				7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC27770 (LOC315145), mRNA.					
Rattus norvegicus	RefSeq	GI_16758977-S	ILMN_270047	NUP88	NM_053616.1	NM_053616.1		113929	16758977	NM_053616.1	Nup88	NP_446068.1	ILMN_1358895	0001570670	S	2111	GAGTCCTCAGAAACCCACCATTACTCTCAGTGCCTACCAGCGAAAGTGCA	10	-	57850280-57850329	10q24	Rattus norvegicus nucleoporin 88kDa (Nup88), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IDA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]		Prei2; Nup84	Prei2; Nup84
Rattus norvegicus	RefSeq	GI_62641487-A	ILMN_295312	ADRBK1	NM_012776.1	NM_012776.1		25238	6978464	NM_012776.1	Adrbk1	NP_036908.1	ILMN_1376677	0004610711	S	2522	TGAAGCCACAGTCGGTGGGTGTGTCACTTCAGGCTCTGTGGGCTACACTC				1q42	Rattus norvegicus adrenergic, beta, receptor kinase 1 (Adrbk1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IEA]; The process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway [goid 2029] [evidence TAS]; The process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway [goid 2029] [evidence ISS]; The process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway [goid 2029] [evidence IEA]; Any process which decreases the force of heart muscle contraction mediated by chemical signaling, hormonal, autocrine or paracrine [goid 3108] [evidence IEA]; Any process which decreases the force of heart muscle contraction mediated by chemical signaling, hormonal, autocrine or paracrine [goid 3108] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor [goid 7217] [evidence IEA]; The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor [goid 7217] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a catecholamine [goid 33605] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45744] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle contraction [goid 45988] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle contraction [goid 45988] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IEA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence ISS]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence ISS]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a beta-2 adrenergic receptor [goid 31698] [evidence TAS]; Catalysis of the reaction: ATP + beta-adrenergic receptor = ADP + phospho-beta-adrenergic receptor [goid 47696] [evidence IEA]	GRK-2; Grk2; BARK1	GRK-2; Grk2; BARK1
Rattus norvegicus	RefSeq	GI_27715294-S	ILMN_65769	RGD1563215_PREDICTED	XM_233199.3	XM_233199.3		313373	109475151	XM_233199.3	RGD1563215_predicted	XP_233199.2	ILMN_2040028	0004220440	S	1132	CGACAGAGTAATTGGCCATAGGAGACAGCCAAGCACAGGTGACCGAGATG	5	-	116483851-116483900	5q33	PREDICTED: Rattus norvegicus similar to cytochrome P450, family 2, subfamily J, polypeptide 4 (predicted) (RGD1563215_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648044-S	ILMN_49598	LOC500295	XM_575644.1	XM_575644.1		500295	62648044	XM_575644.1	LOC500295	XP_575644.1	ILMN_1355729	0000360372	S	2439	GGACATCTGTGTGTCTTGTTTCCAGGTTTGCCAAAGACCCTACAGCCACC				4q42	PREDICTED: Rattus norvegicus similar to KIAA0218 (LOC500295), mRNA.					
Rattus norvegicus	RefSeq	GI_62653346-S	ILMN_48386	LOC363031	XM_343362.2	XM_343362.2		363031	62653346	XM_343362.2	LOC363031	XP_343363.2	ILMN_1364030	0006590465	S	2909	TGCTTTGGACAAGACCATATTTGAAGATGTTAGTGGCTTTGGTGCCTGGC				8q13	PREDICTED: Rattus norvegicus similar to Anillin (LOC363031), mRNA.					
Rattus norvegicus	RefSeq	GI_62639066-S	ILMN_265937	STRN4_PREDICTED	XM_001074709.1	XM_001074709.1		308392	109461315	XM_001074709.1	Strn4_predicted	XP_001074709.1	ILMN_1361378	0002100551	S	3131	TCCAAGATGAAAGAAGGCACCAGGCTCCACCCTAGAGAGCCACCCATCGG				1q21	PREDICTED: Rattus norvegicus striatin, calmodulin binding protein 4 (predicted) (Strn4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576698-S	ILMN_299724	OLR1710	NM_001000886.1	NM_001000886.1		405186	47576698	NM_001000886.1	Olr1710	NP_001000886.1	ILMN_1366021	0005860301	S	390	ACACTATGAAGTCATCATGGATCCCAGAAAGTGCACTTGGGCTGTGACAG	20	+	857046-857095	20p12	Rattus norvegicus olfactory receptor 1710 (Olr1710), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1710	Olr1710
Rattus norvegicus	RefSeq	GI_62665904-S	ILMN_48903	UBE2D1_PREDICTED	XM_342125.3	XM_342125.3		361831	109509371	XM_342125.3	Ube2d1_predicted	XP_342126.3	ILMN_1351247	0001940653	S	173	CCCCCCGACAGCGCCTATCAAGGTGGAGTCTTCTTCCTCACTGTCCACTT	20	+	18078180-18078182:18080636-18080682	20p11	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast) (predicted) (Ube2d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656735-S	ILMN_65870	TEX14_PREDICTED	XM_220825.4	XM_220825.4		287603	109488739	XM_220825.4	Tex14_predicted	XP_220825.4	ILMN_1372766	0003870504	S	4198	ACCTGAGGAGAACATGACACTGCTGGACCCCACCAAGGGCTCTACAAGGG	10	+	75839609-75839656:75841783-75841784	10q26	PREDICTED: Rattus norvegicus testis expressed gene 14 (predicted) (Tex14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18543358-S	ILMN_293583	MARK3	NM_130749.1	NM_130749.1		170577	18543358	NM_130749.1	Mark3	NP_570105.1	ILMN_1356397	0005080471	S	2321	GACGGGCACGCTGAGAGCCTGGTGCAGTGGGAGATGGAAGTCTGTAAGCT	6	+	136438288-136438337	6q32	Rattus norvegicus MAP/microtubule affinity-regulating kinase 3 (Mark3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_21955143-S	ILMN_295239	NR2C1	NM_145780.1	NM_145780.1		252924	21955143	NM_145780.1	Nr2c1	NP_665723.1	ILMN_1351390	0002970181	S	1964	GTGGAGGTCACCCTGCTCCAGGCTAAGTTTACCGTTCCTTCTCGGAACAC	7	+	31344928-31344977	7q13	Rattus norvegicus nuclear receptor subfamily 2, group C, member 1 (Nr2c1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665906-S	ILMN_49071	LOC497746	XM_579568.1	XM_579568.1		497746	62665906	XM_579568.1	LOC497746	XP_579568.1	ILMN_1364642	0003940195	S	10540	CAGAGACTTAAGACTAGCTCGGCTCTTCCTGATGCCTCCAAGGAACAGGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053644 (LOC497746), mRNA.					
Rattus norvegicus	RefSeq	GI_12018335-S	ILMN_270813	VAX2	NM_022637.1	NM_022637.1		64572	12018335	NM_022637.1	Vax2	NP_072159.1	ILMN_1369667	0002470332	S	758	CTCCACTCCTGGACTTGCCCGCCAGCTACAAACTGGGGTCCTCGGCTTTT	4	+	117927290-117927339	4q34	Rattus norvegicus ventral anterior homeobox 2 (Vax2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; The establishment, maintenance and elaboration of the dorsal/ventral axis [goid 9950] [evidence ISS]; The establishment, maintenance and elaboration of the dorsal/ventral axis [goid 9950] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. Morphogenesis pertains to the creation of form [goid 48048] [evidence ISS]; The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. Morphogenesis pertains to the creation of form [goid 48048] [evidence IEA]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA that is assembled into chromatin [goid 31490] [evidence ISS]; Interacting selectively with DNA that is assembled into chromatin [goid 31490] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758771-S	ILMN_286806	CGRRF1	NM_053899.1	NM_053899.1		116679	16758771	NM_053899.1	Cgrrf1	NP_446351.1	ILMN_1367213	0000870711	S	988	CAGCTGTGTGTGCTACTTCAAGCAGTGTCCCATGTGCCGCCAGTTTGTGC	15	+	22703557-22703606	15p14	Rattus norvegicus cell growth regulator with ring finger domain 1 (Cgrrf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cgr19; MGC93274	Cgr19; MGC93274
Rattus norvegicus	RefSeq	GI_62658905-S	ILMN_54561	LOC501837	XM_577250.1	XM_577250.1		501837	62658905	XM_577250.1	LOC501837	XP_577250.1	ILMN_1373575	0006290142	S	897	GGTAAGGTTCTCAGTGTGCGTCCGGATGAAGGGGTCTCAAAGTATCTGGG					PREDICTED: Rattus norvegicus similar to interleukin 31 (LOC501837), mRNA.					
Rattus norvegicus	RefSeq	GI_6981637-S	ILMN_282889	HNF1A	NM_012669.1	NM_012669.1		24817	6981637	NM_012669.1	Hnf1a	NP_036801.1	ILMN_1360016	0003990692	S	3197	GATTTCTGTGTCCTCCTCGGTACTGCAAGAAACCCACCCAGTCCAGGTGT	12	+	42945329-42945378	12q16	Rattus norvegicus HNF1 homeobox A (Hnf1a), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; The nucleus of either the ovum or the spermatozoon following fertilization. Thus, in the fertilized ovum, there are two pronuclei, one originating from the ovum, the other from the spermatozoon that brought about fertilization; they approach each other, but do not fuse until just before the first cleavage, when each pronucleus loses its membrane to release its contents [goid 45120] [evidence IEA]; The nucleus of either the ovum or the spermatozoon following fertilization. Thus, in the fertilized ovum, there are two pronuclei, one originating from the ovum, the other from the spermatozoon that brought about fertilization; they approach each other, but do not fuse until just before the first cleavage, when each pronucleus loses its membrane to release its contents [goid 45120] [evidence ISS]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence IEA]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEA]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence IEA]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IDA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence ISS]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence IEA]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence ISS]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; Any process that modulates the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10551] [evidence ISS]; The directed movement of bile acid and bile salts into, out of, within or between cells [goid 15721] [evidence IEA]; The directed movement of bile acid and bile salts into, out of, within or between cells [goid 15721] [evidence ISS]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence IEA]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IMP]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of the Wnt receptor mediated signal transduction pathway [goid 30111] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence IEA]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46883] [evidence ISS]; The process that gives rise to the paraxial mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 48341] [evidence IEA]; The process that gives rise to the paraxial mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 48341] [evidence ISS]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence IEA]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	HNF1; Lfb1; Hnf1a; LF-B1	HNF1; Lfb1; Hnf1a; LF-B1
Rattus norvegicus	RefSeq	GI_62638995-S	ILMN_285654	RGD1311663_PREDICTED	XM_001067437.1	XM_001067437.1		292548	109461071	XM_001067437.1	RGD1311663_predicted	XP_001067437.1	ILMN_1362812	0004010064	S	2048	CCAGTGTGGGAAATCTTTTAGCCAGGTGTCTACCCTCACTCGACATCAGC				1q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A230102I05 (predicted) (RGD1311663_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27682594-S	ILMN_161754	LOC309304	XM_219777.1	XM_219777.1			27682594	XM_219777.1	LOC309304		ILMN_2040916	0006280364	S	860	AGGCAGCGCACGTTAAACCTTCATGGCTGACGAGGAAGGAGGGGCTTCCT										
Rattus norvegicus	RefSeq	GI_47577812-S	ILMN_267402	OLR1220	NM_001000814.1	NM_001000814.1		405100	47577812	NM_001000814.1	Olr1220	NP_001000814.1	ILMN_1364234	0000110364	S	431	GTTTTATGCTGATGTTTGGGTCTTACTTGATGGGGTTTGCTGGGGCCATG	8	+	40340528-40340577	8q21	Rattus norvegicus olfactory receptor 1220 (Olr1220), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1220	Olr1220
Rattus norvegicus	RefSeq	GI_23618921-S	ILMN_266781	PDE1C	NM_031078.1	NM_031078.1		81742	23618921	NM_031078.1	Pde1c	NP_112340.1	ILMN_1367431	0003130278	S	2704	TCTCAGCACCTACTACACACACCAGGACACACCCCCGAAGTCATGCAGCT	4	-	84937074-84937123	4q24	Rattus norvegicus phosphodiesterase 1C (Pde1c), mRNA.		The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEP]	Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate; catalytic activity is regulated by calmodulin [goid 4117] [evidence IDA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_11067392-S	ILMN_286693	GDF9	NM_021672.1	NM_021672.1		59304	11067392	NM_021672.1	Gdf9	NP_067704.1	ILMN_1357765	0004920593	S	1218	GCCCGGCAAATACAGCCCCTTGAGCGTGTTGACCATTGAACCCGATGGCT	10	+	38902903-38902952	10q22	Rattus norvegicus growth differentiation factor 9 (Gdf9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process by which an oocyte irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 1555] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661161-S	ILMN_64394	LOC361021	XM_341296.2	XM_341296.2		361021	62661161	XM_341296.2	LOC361021	XP_341297.2	ILMN_1361543	0004850463	S	828	GATGCCCCAGAGCCTCAGTCTGTTTGTGAGAGCGTGAGGAAGGGCCTGTC					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC361021), mRNA.					
Rattus norvegicus	RefSeq	GI_62660087-S	ILMN_283667	LOC690161	XM_001073516.1	XM_001073516.1		690161	109499408	XM_001073516.1	LOC690161	XP_001073516.1	ILMN_1357749	0000050168	S	3570	CGCCGAGGAGATGGCTGTGTCAGGGTTTGGAGACACTCGTGATTCAAGTC	14	+	3552334-3552356:3554481-3554507	14p22	PREDICTED: Rattus norvegicus similar to HFM1, ATP-dependent DNA helicase homolog (LOC690161), mRNA.					
Rattus norvegicus	RefSeq	GI_50657409-S	ILMN_266630	SENP18	NM_001002834.1	NM_001002834.1		408222	50657409	NM_001002834.1	Senp18	NP_001002834.1	ILMN_1353649	0004670397	S	852	ACGAGGAGATATGCAGACCCTCAAGAACGGTCAGTGGCTCAATGATGAGG	4	-	164673485-164673534	4q42	Rattus norvegicus sentrin 18 (Senp18), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47578034-S	ILMN_282338	OLR1061	NM_001000065.1	NM_001000065.1		288829	47578034	NM_001000065.1	Olr1061	NP_001000065.1	ILMN_1370005	0000520136	S	795	TCTCCAACCCAAGAGTTTACACACCCCAGACACCGACAAGGCTACTGCTC	7	-	8016517-8016566	7q11	Rattus norvegicus olfactory receptor 1061 (Olr1061), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1061	Olr1061
Rattus norvegicus	RefSeq	GI_13928735-S	ILMN_298592	AMPD3	NM_031544.1	NM_031544.1		25095	13928735	NM_031544.1	Ampd3	NP_113732.1	ILMN_1369934	0006370402	S	3676	GACTCTGCCAGCCTTCCAGTGTTCACACAGCGTATGGAAGGAACCATGTC	1	+	168568170-168568219	1q33	Rattus norvegicus adenosine monophosphate deaminase 3 (Ampd3), mRNA.		The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate [goid 6196] [evidence TAS]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEA]; The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9168] [evidence IEA]	Catalysis of the reaction: AMP + H2O = IMP + NH3 [goid 3876] [evidence IDA]; Catalysis of the reaction: AMP + H2O = IMP + NH3 [goid 3876] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18491028-S	ILMN_270776	CCKBR	NM_013165.2	NM_013165.2		25706	18491028	NM_013165.2	Cckbr	NP_037297.1	ILMN_1351032	0006180692	S	2000	GTCCTCCTGGACTTCTTGAGGTAGGTGAACAGGTGTGGTTTATGGGAAGC	1	+	163166821-163166870	1q33	Rattus norvegicus cholecystokinin B receptor (Cckbr), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with gastrin to initiate a change in cell activity [goid 15054] [evidence IMP]; Combining with gastrin to initiate a change in cell activity [goid 15054] [evidence IEA]; Combining with gastrin to initiate a change in cell activity [goid 15054] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with gastrin to initiate a change in cell activity [goid 15054] [evidence IEA]	CHOLREC	CHOLREC
Rattus norvegicus	RefSeq	GI_47577418-S	ILMN_292176	OLR696	NM_001001063.1	NM_001001063.1		405951	47577418	NM_001001063.1	Olr696	NP_001001063.1	ILMN_1357843	0003130112	S	411	CCACAATTGCTGTCTCCTAGTGGGTATATGTTGGATAATGGGTTTTCTCC	3	-	73732222-73732271	3q24	Rattus norvegicus olfactory receptor 696 (Olr696), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr696	Olr696
Rattus norvegicus	RefSeq	GI_62646815-S	ILMN_59795	LOC502728	XM_578227.1	XM_578227.1		502728	62646815	XM_578227.1	LOC502728	XP_578227.1	ILMN_1368396	0003710563	S	852	GTCACTTACCTAACCAGTCCACATAAGGATGTCACTTACCTAACCAGCCC					PREDICTED: Rattus norvegicus similar to XMAP4 (LOC502728), mRNA.					
Rattus norvegicus	RefSeq	GI_62645297-S	ILMN_52009	OSBPL6_PREDICTED	XM_242057.4	XM_242057.4		311129	109468330	XM_242057.4	Osbpl6_predicted	XP_242057.4	ILMN_1370649	0000870204	S	3595	CCACATGTTCCGTCTGCTGTCCGAATACGTCATCCCGAATCCTTAGGAGC	3	+	59288505-59288554	3q23	PREDICTED: Rattus norvegicus oxysterol binding protein-like 6 (predicted) (Osbpl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652599-S	ILMN_282980	LOC300024	XM_216959.2	XM_216959.2		300024	62652598	XM_216959.2	LOC300024	XP_216959.1	ILMN_1364985	0005270577	S	282	CCTTCCCGTCTGCCCAACGAGTTCTCAAACTGCTGAGATCCTGGGTACTG	7	-	113242719-113242768	7q34	PREDICTED: Rattus norvegicus similar to Ly6-B antigen gene (LOC300024), mRNA.					
Rattus norvegicus	RefSeq	GI_62652598-S	ILMN_282980	LOC300024	XM_216959.2	XM_216959.2		300024	62652598	XM_216959.2	LOC300024	XP_216959.1	ILMN_1369269	0001850128	S	694	CTTAGCCCTGGAGGCACGTGGACAGCACGGGGAAGATACAGAAACCCAAG	7	-	113242307-113242356	7q34	PREDICTED: Rattus norvegicus similar to Ly6-B antigen gene (LOC300024), mRNA.					
Rattus norvegicus	RefSeq	GI_47059098-S	ILMN_271802	BTNL8	NM_212489.1	NM_212489.1		406160	47059098	NM_212489.1	Btnl8	NP_997654.1	ILMN_1366561	0005670746	S	1629	GGGGTTAGCTTTGCTTCCTTTGAAGGAGTCTCTGAGTCCCACAGGGGAGG	20	+	4413641-4413690	20p12	Rattus norvegicus butyrophilin-like 8 (Btnl8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence TAS]			
Rattus norvegicus	RefSeq	GI_62653779-S	ILMN_270667	LARP6_PREDICTED	XM_001075260.1	XM_001075260.1		315731	109484834	XM_001075260.1	Larp6_predicted	XP_001075260.1	ILMN_1364914	0005360152	S	1512	TCGCAGAAGACGCCAAGCAGAGATGGGGACTCAGGAGAAAAGTCCAGGGG				8q24	PREDICTED: Rattus norvegicus La ribonucleoprotein domain family, member 6 (predicted) (Larp6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644985-A	ILMN_292788	ASB6	NM_001011963.1	NM_001011963.1		296627	58865495	NM_001011963.1	Asb6	NP_001011963.1	ILMN_1376895	0000130377	S	1023	TGCATGGTGCGTCCTGCTGGTCTGGCTTCAACCTCATTTTTGAGAGGCTC	3	-	9878276-9878325	3p12	Rattus norvegicus ankyrin repeat and SOCS box-containing 6 (Asb6), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62651338-S	ILMN_58589	LOC500735	XM_576114.1	XM_576114.1		500735	62651338	XM_576114.1	LOC500735	XP_576114.1	ILMN_1368306	0006620403	S	726	AGCTTGGGTTTCCTTTTCTCTGTTTGCAGGTGTCCAGTGTGAGGTGCAGC					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC500735), mRNA.					
Rattus norvegicus	RefSeq	GI_13592151-S	ILMN_299733	GSTM7	NM_031154.1	NM_031154.1		81869	13592151	NM_031154.1	Gstm7	NP_112416.1	ILMN_1358491	0006520537	S	955	CCAACATGTGATTATTTTGGGCAGGTGCAGGCTCCCCGGCAGATGGGGTC	2	-	203491570-203491619	2q34	Rattus norvegicus glutathione S-transferase, mu 7 (Gstm7), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667029-S	ILMN_264829	RGD1562685_PREDICTED	XM_001067990.1	XM_001067990.1		296867	109512027	XM_001067990.1	RGD1562685_predicted	XP_001067990.1	ILMN_1358270	0001690019	S	1286	ATCCAGATCCCTCTCTAGATGAAGAGCCGGGGCCCTCAACCCGGGATTCT				Xq31	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor PGR15L (predicted) (RGD1562685_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659902-S	ILMN_54562	HLX1_PREDICTED	XM_344184.3	XM_344184.3		364069	109498331	XM_344184.3	Hlx1_predicted	XP_344185.1	ILMN_1365083	0001780072	S	1976	GGGGTTCATGCCTTTTCTCTTGCTGCCAAGGCTCCCTAAGGCCCACAACC	13	-	100685954-100686003	13q26	PREDICTED: Rattus norvegicus H2.0-like homeo box 1 (Drosophila) (predicted) (Hlx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640794	ILMN_54516	RGD1562710_PREDICTED	XM_574481.2	XM_574481.2		499194	109458988	XM_574481.2	RGD1562710_predicted	XP_574481.1	ILMN_1650767	0003780736	S	460	CATGCGTCCATCCAGGGAAACTGAGGAATGGAACCCTAGCAGTGGCCTCC	1	-	137097618-137097667	1q31	PREDICTED: Rattus norvegicus similar to neuromedin B precursor - rat (predicted) (RGD1562710_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655449-S	ILMN_299908	RGD1561755_PREDICTED	XM_001063536.1	XM_001063536.1		367306	109487434	XM_001063536.1	RGD1561755_predicted	XP_001063536.1	ILMN_1354085	0003450068	S	710	TTCGGGATCTGGAGGATGTGCAGGATCCAGGAGGAGCTTTGCCTCCCCCA				9q35	PREDICTED: Rattus norvegicus similar to Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914 (predicted) (RGD1561755_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646315-S	ILMN_270173	RGD1307316_PREDICTED	XM_001070026.1	XM_001070026.1		311613	109471250	XM_001070026.1	RGD1307316_predicted	XP_001070026.1	ILMN_1368072	0005270100	S	2411	CCAAGTGGACCATCGAAGAGGTCTTTGGCTTCGTTCAGACCTTGACGGGC				3q42	PREDICTED: Rattus norvegicus similar to KIAA0681 protein (predicted) (RGD1307316_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789039-S	ILMN_278541	PDGFA	NM_012801.1	NM_012801.1		25266	29789039	NM_012801.1	Pdgfa	NP_036933.1	ILMN_1365485	0001570039	S	1160	GCCAATGTGCGTGCGGTCTTTGTTCTCCTCCGTGAAAAACTGTGTCCGAG	12	+	16172371-16172412	12q11	Rattus norvegicus platelet-derived growth factor alpha polypeptide (Pdgfa), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IEA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The volume enclosed by the membrane of the platelet dense granule [goid 31089] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol [goid 10512] [evidence ISS]; Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue [goid 10544] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle cell migration [goid 14910] [evidence ISS]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence IEA]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEP]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a lower concentration, in a concentration gradient of a specific chemical [goid 50919] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence IEA]	Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with platelet-derived growth factor [goid 48407] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	PDGFACP	PDGFACP
Rattus norvegicus	RefSeq	GI_62665567-S	ILMN_293615	CB741658	NR_002316.1	NR_002316.1		415051	66773399	NR_002316.1	CB741658		ILMN_1354193	0005890671	S	3174	GAGCTCAGTTCTTCTAAGGGCTTTGTGCCTAGGAAGGAGGTGGCCCGAGG	20	-	3270152-3270201	20p12	Rattus norvegicus CB741658 gene (CB741658) on chromosome 20.					
Rattus norvegicus	RefSeq	GI_62649516-S	ILMN_55762	LOC366389	XM_345545.2	XM_345545.2		366389	62649516	XM_345545.2	LOC366389	XP_345546.2	ILMN_1362503	0004670600	S	547	GGCAGCCTGGGCCTCAGCTCTCGGGCTGTCAGCAATTTCTATTCGAGGAA					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG04311 (LOC366389), mRNA.					
Rattus norvegicus	RefSeq	GI_62654156-S	ILMN_66043	LOC501040	XM_576452.1	XM_576452.1		501040	62654156	XM_576452.1	LOC501040	XP_576452.1	ILMN_1365016	0000450347	S	409	GCACAGTGGATGGAAACGGTGAAGGTCCTGAGGCATCATCACGGGGAGCT					PREDICTED: Rattus norvegicus similar to Nicotinamide nucleotide adenylyltransferase 3 (LOC501040), mRNA.					
Rattus norvegicus	RefSeq	GI_62653050-S	ILMN_54544	RGD1559522_PREDICTED	XM_576342.2	XM_576342.2		500931	109481295	XM_576342.2	RGD1559522_predicted	XP_576342.2	ILMN_1369251	0005900019	S	2735	CAGGCTATTGGCAGCGGATGAACATACCTCCTACCCCAGAAGCTCGGCGT	7	-	138030123-138030172	7q36	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434J0113 (predicted) (RGD1559522_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20301997-S	ILMN_267117	PROK2	NM_138852.1	NM_138852.1		192206	20301997	NM_138852.1	Prok2	NP_620207.1	ILMN_1353817	0005080056	S	98	GCGACAAGGACTCTCAGTGTGGAGGAGGAATGTGCTGCGCTGTCAGTATC	4	-	134570988-134571037	4q34	Rattus norvegicus prokineticin 2 (Prok2), transcript variant 2, mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IDA]	Bv8	Bv8
Rattus norvegicus	RefSeq	GI_62645138-I	ILMN_66403	AXOT_PREDICTED	XM_575138.1	XM_575138.1		311059	62645138	XM_575138.1	Axot_predicted	XP_575138.1	ILMN_1375342	0002570519	S	322	ATTGTGCTTCGTCGCCGACTTCTCTGCTCGTAGCCCGAGGACCGAGCCCA				3q21	PREDICTED: Rattus norvegicus axotrophin (predicted) (Axot_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652099	ILMN_52029	LOC500832	XM_576222.1	XM_576222.1		500832	62652099	XM_576222.1	LOC500832	XP_576222.1	ILMN_1649839	0002370181	S	2274	GCCAGAAGGATTTGCTGTGGCGTGTGAAGAGGTTGAAGAACCACCGCTGA				7q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23560 (LOC500832), mRNA.					
Rattus norvegicus	RefSeq	GI_62645202-S	ILMN_288086	RGD1562744_PREDICTED	XR_007820.1	XR_007820.1		311121	109470072	XR_007820.1	RGD1562744_predicted		ILMN_1355158	0000110458	S	965	GAGAGTGGCAGATCTCATGACCTACATGGCCTCCAAGATGTAAGAAACTC				3q21	PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (predicted) (RGD1562744_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718318-S	ILMN_266385	LOC688490	XM_001067146.1	XM_001067146.1		688490	109513242	XM_001067146.1	LOC688490	XP_001067146.1	ILMN_1361165	0007050551	S	441	CTGAGGTTCCTGACAGAGAGATCCAAGAACTACAGGCCACACTTCAGGCC	Un|NW_047874.1	-	406918-406933:408101-408134		PREDICTED: Rattus norvegicus hypothetical protein LOC688490 (LOC688490), mRNA.					
Rattus norvegicus	RefSeq	GI_58865503-A	ILMN_290359	FASTK	NM_001011967.1	NM_001011967.1		296741	58865503	NM_001011967.1	Fastk	NP_001011967.1	ILMN_1376279	0005340010	S	1467	GTCTTCGCTGGGGACCTGAGGGTGGGTGAGGGAGTACACACAGTACACAT	4	+	6100547-6100596	4q11	Rattus norvegicus Fas-activated serine/threonine kinase (Fastk), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662473-S	ILMN_275605	ATP13A1_PREDICTED	XM_001070411.1	XM_001070411.1		290673	109503997	XM_001070411.1	Atp13a1_predicted	XP_001070411.1	ILMN_1358532	0003840181	S	3735	TTGGAAGACTGAGTTGGGACCCTTGTGGGCATCCGCTGGCTGGGCTAGTA				16p14	PREDICTED: Rattus norvegicus ATPase type 13A1 (predicted) (Atp13a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742808-S	ILMN_294283	BTRC	NM_001007148.1	NM_001007148.1		361765	55742808	NM_001007148.1	Btrc	NP_001007149.1	ILMN_1352972	0001690739	S	1957	GTCTGCTCGGCACACCGGCTGCTTCAGTGCTGCTATCAGAAGATGTCTTT	1	+	250693775-250693824	1q54	Rattus norvegicus beta-transducin repeat containing (Btrc), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105884; beta-TrCP1	MGC105884; beta-TrCP1
Rattus norvegicus	RefSeq	GI_62659192-S	ILMN_51372	LOC498217	XM_573435.1	XM_573435.1		498217	62659192	XM_573435.1	LOC498217	XP_573435.1	ILMN_1353192	0002370632	S	1324	GATAGACAAACCCATAGCCAGACTAACGAGAGGACACAGAGAGTGCGTCC					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC498217), mRNA.					
Rattus norvegicus	RefSeq	GI_19424257-S	ILMN_279146	CDC25A	NM_133571.1	NM_133571.1		171102	19424257	NM_133571.1	Cdc25a	NP_598255.1	ILMN_1349057	0000430603	S	3253	GGAGAGCAAGGGAATGAGCAGCCTCTTCTTCGGTGTGTTGAAGTATGTCC	8	+	114255805-114255854	8q32	Rattus norvegicus cell division cycle 25 homolog A (S. pombe) (Cdc25a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IMP]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651024-S	ILMN_283286	RGD1562469_PREDICTED	XM_001054778.1	XM_001054778.1		366689	109479612	XM_001054778.1	RGD1562469_predicted	XP_001054778.1	ILMN_1372092	0006520053	S	423	CAGTTGAAGCGCCAGTCTGCATCACCCAGAGAAGCCCAATTTGTGAGGAC				6q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1562469_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645026-S	ILMN_264721	ZBTB26_PREDICTED	XM_001053725.1	XM_001053725.1		311910	109469807	XM_001053725.1	Zbtb26_predicted	XP_001053725.1	ILMN_1351013	0000840347	S	1778	GGGGGGAATGAGGCTGGGATAGGAGGTGATAACTGCTGTTGACCTAAATA				3q11	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 26 (predicted) (Zbtb26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083648-S	ILMN_53980	SND1	NM_022694.2	NM_022694.2		64635	77404394	NM_022694.2	Snd1	NP_073185.2	ILMN_1359636	0003610019	S	3050	AGAAACCTCCTCTGTCGCGGGTAGCATTGGAGCTGGGGTGGAGAGCCCAA	4	+	55760901-55760950	4q22	Rattus norvegicus staphylococcal nuclease and tudor domain containing 1 (Snd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation [goid 16442] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process by which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and occurs through a specific decrease in the level of mRNA of both host genes and transgenes [goid 16246] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence TAS]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	SND p102	SND p102
Rattus norvegicus	RefSeq	GI_12083634-S	ILMN_272718	LOC684686	XM_001071605.1	XM_001071605.1		684686	109505802	XM_001071605.1	LOC684686	XP_001071605.1	ILMN_1350203	0006450300	S	294	CGCACACTCTACGGCTTCGGTGGTTAAACTGCTAATGCGCTTTCCTTAGC					PREDICTED: Rattus norvegicus similar to germinal histone H4 gene (LOC684686), mRNA.					
Rattus norvegicus	RefSeq	GI_62663959-S	ILMN_63241	LOC364787	XM_577600.1	XM_577600.1		364787	62663959	XM_577600.1	LOC364787	XP_577600.1	ILMN_1366450	0004200372	S	232	GTGCTCAGTATGTTGTGGAGCCAACTGGCATGGAGAAGGCTGGGGCTCAC					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC364787), mRNA.					
Rattus norvegicus	RefSeq	GI_47576184-S	ILMN_301148	OLR995	NM_001000938.1	NM_001000938.1		405265	47576184	NM_001000938.1	Olr995	NP_001000938.1	ILMN_1361499	0006510097	S	36	GGGTCTGACAGATGACATTCAGTTGCAAATTCTGCTTTTCATCTTTCTGC	7	+	6335627-6335676	7q11	Rattus norvegicus olfactory receptor 995 (Olr995), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr995	Olr995
Rattus norvegicus	RefSeq	GI_62079068-S	ILMN_288783	RSRC1	NM_001014172.1	NM_001014172.1		361956	62079068	NM_001014172.1	Rsrc1	NP_001014194.1	ILMN_1371398	0002900184	S	904	ATGTCAAAAAGTCGGTAGAGCCGAGTGAGGTGAAGCATGTGACTCCAGCC	2	+	157212224-157212273	2q31	Rattus norvegicus arginine/serine-rich coiled-coil 1 (Rsrc1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence ISS]	The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition [goid 380] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1304968	RGD1304968
Rattus norvegicus	RefSeq	GI_62659200-S	ILMN_51750	LOC498219	XM_573438.1	XM_573438.1		498219	62659200	XM_573438.1	LOC498219	XP_573438.1	ILMN_1354353	0000540402	S	507	CAGGGGACAACAGATGCTGGTGAGGATGTGGAGGAAGAGGAACACTCCTC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC498219), mRNA.					
Rattus norvegicus	RefSeq	GI_62644719-S	ILMN_273437	ANAPC2	XM_001072691.1	XM_001072691.1		296558	109469432	XM_001072691.1	Anapc2	XP_001072691.1	ILMN_1361152	0006940524	S	2914	GCTGGGGCCTATTTCAGCAAGTGTGAGTGGGGTTGGCAGCTCAGAGTCTC				3p13	PREDICTED: Rattus norvegicus anaphase promoting complex subunit 2 (Anapc2), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity [goid 31461] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718482-S	ILMN_63203	LOC303734	XM_221188.4	XM_221188.4		303734	109513686	XM_221188.4	LOC303734	XP_221188.4	ILMN_1362486	0007100500	S	2369	CCTATGGGGGTACAGTGGAGACACCATCACCCAAGCCTCCAAGAGAAGGC	Un|NW_047902.1	-	193602-193651		PREDICTED: Rattus norvegicus similar to TBC1 domain family, member 16 (LOC303734), mRNA.					
Rattus norvegicus	RefSeq	GI_47577014-S	ILMN_266166	OLR782	NM_001000605.1	NM_001000605.1		404794	47577014	NM_001000605.1	Olr782	NP_001000605.1	ILMN_1350414	0006220484	S	594	GGTCACTGTCAACAGTGGGTTCATTTCTGTGGGGTCCTTTCTTCTACTGG	3	-	97553279-97553328	3q34	Rattus norvegicus olfactory receptor 782 (Olr782), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr782	Olr782
Rattus norvegicus	RefSeq	GI_62647477-S	ILMN_279266	ELMOD3	NM_001013087.1	NM_001013087.1		297342	62955039	NM_001013087.1	Elmod3	NP_001013105.1	ILMN_1373170	0001570070	S	1131	CAGCTTCTACGCAGCTACTTTCCTTCACCTGGCACGAATGTGGAGGACCC	4	-	105867377-105867426	4q33	Rattus norvegicus ELMO/CED-12 domain containing 3 (Elmod3), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IEA]		Kcmf1	Kcmf1
Rattus norvegicus	RefSeq	GI_47578068-S	ILMN_263159	OLR1007	NM_001000076.1	NM_001000076.1		288887	47578068	NM_001000076.1	Olr1007	NP_001000076.1	ILMN_1359600	0003520465	S	427	GTCTTTAGCTCATGGGTGACTGGGTTCTTGATCATCTTTCCCCCATTGGC	7	-	6621327-6621376	7q11	Rattus norvegicus olfactory receptor 1007 (Olr1007), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1007	Olr1007
Rattus norvegicus	RefSeq	GI_27545385-S	ILMN_48183	SKAP1	NM_173311.2	NM_173311.2		286975	67514573	NM_173311.2	Skap1	NP_775433.2	ILMN_1353045	0006110086	S	808	ATGACATTGATGGCTTTGACTCCGCAAGGTCCGGCTCCCAGGGCAGAGCC	10	+	85463329-85463378	10q31	Rattus norvegicus src kinase associated phosphoprotein 1 (Skap1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	Skap55	Skap55
Rattus norvegicus	RefSeq	GI_6978520-S	ILMN_264237	APOC1	NM_012824.1	NM_012824.1		25292	6978520	NM_012824.1	Apoc1	NP_036956.1	ILMN_1371556	0001400594	S	155	CCAGGCGGCCCCTGACTTTTCCAGCGCAATGGAGAGCTTACCGGATAAAC	1	-	78999328-78999377	1q21	Rattus norvegicus apolipoprotein C-I (Apoc1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence ISS]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence IEA]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence TAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]	ALPCI	ALPCI
Rattus norvegicus	RefSeq	GI_62644577	ILMN_286161	RGD1559623_PREDICTED	XM_001080203.1	XM_001080203.1		499731	109467790	XM_001080203.1	RGD1559623_predicted	XP_001080203.1	ILMN_1650920	0001780706	S	833	CCTCTTCCTGGGCGATGACTAAGACTTGGCGGGAATCGACTCTGGTTCAC				2q45	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5230400J09 (predicted) (RGD1559623_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31342499-A	ILMN_262755	MAPKAPK2	NM_178102.2	NM_178102.2		289014	31342499	NM_178102.2	Mapkapk2	NP_835203.1	ILMN_1376451	0005720519	S	2630	AGGATTGAGGAGGAGCAGGTGGGGAAGAGTCTTTGTGCCATGGTCCCCCA				13q13	Rattus norvegicus MAP kinase-activated protein kinase 2 (Mapkapk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence IEA]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393321-S	ILMN_285526	PDIA3	NM_017319.1	NM_017319.1		29468	8393321	NM_017319.1	Pdia3	NP_059015.1	ILMN_1353558	0001400402	S	1438	CTCACCAGCCAACAAGAAGCTAACTCCAAAGAAGTATGAAGGTGGCCGTG	3	+	108238926-108238972:108239742-108239744	3q35	Rattus norvegicus protein disulfide isomerase family A, member 3 (Pdia3), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	Grp58; ERp57; ER60	Grp58; ERp57; ER60
Rattus norvegicus	RefSeq	GI_62641354-S	ILMN_283078	RGD1562778_PREDICTED	XM_001080388.1	XM_001080388.1		365377	109462947	XM_001080388.1	RGD1562778_predicted	XP_001080388.1	ILMN_1364666	0000940129	S	1454	CTTTTCATGAGCGTCTGCCTGGGCCGGTGTACCCCATGTTTGACGTGTGC				1q36	PREDICTED: Rattus norvegicus similar to tripartite motif protein 50 (predicted) (RGD1562778_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660355-S	ILMN_279507	RGD1559459_PREDICTED	XM_001074691.1	XM_001074691.1		501907	109500499	XM_001074691.1	RGD1559459_predicted	XP_001074691.1	ILMN_1364802	0006290139	S	1158	CCACGGGATTCCTGTGGTTGGCATTCCTTTGTTTGGAGACCAAAAGGACA				14p21	PREDICTED: Rattus norvegicus similar to Expressed sequence AI788959 (predicted) (RGD1559459_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652844-S	ILMN_278661	MPPED1_PREDICTED	XM_001077948.1	XM_001077948.1		362971	109482651	XM_001077948.1	Mpped1_predicted	XP_001077948.1	ILMN_1362968	0000060551	S	814	CATGGACCACCACTGGGCTTTCTAGACTGGGTCCCCAAGAAGATGCAGCG				7q34	PREDICTED: Rattus norvegicus metallophosphoesterase domain containing 1 (predicted) (Mpped1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254730-S	ILMN_292051	A3GALT2	NM_138524.2	NM_138524.2		171553	40254730	NM_138524.2	A3galt2	NP_612533.1	ILMN_1368384	0003170465	S	1741	TTGGCAAGGCCATTCAAGGGAAGCCTCTTGTGGGACCCTTCAGCTCGGTC	5	+	147993973-147994022	5q36	Rattus norvegicus alpha 1,3-galactosyltransferase 2 (A3galt2), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide [goid 6688] [evidence IDA]	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IDA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP-galactose = alpha-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP [goid 47276] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661922-S	ILMN_269824	RGD1561632_PREDICTED	XM_577423.1	XM_577423.1		501996	62661922	XM_577423.1	RGD1561632_predicted	XP_577423.1	ILMN_1365183	0004200528	S	309	GTGCCCACACTGCGTCAGCCTACAGACAGGATCTCACATGGACCCAATGG	15	+	33037863-33037912	15p13	PREDICTED: Rattus norvegicus similar to IL25 (predicted) (RGD1561632_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662041-S	ILMN_56333	LOC502033	XM_577465.1	XM_577465.1		502033	62662041	XM_577465.1	LOC502033	XP_577465.1	ILMN_1375026	0006400427	S	761	CTGTGGGCTGTGGACCTGTGAGCTATGGACCTGTGAGCTATGGACCTGTG					PREDICTED: Rattus norvegicus LOC502033 (LOC502033), mRNA.					
Rattus norvegicus	RefSeq	GI_62665446-S	ILMN_287857	CAPN9	XM_001054278.1	XM_001054278.1		116694	109509058	XM_001054278.1	Capn9	XP_001054278.1	ILMN_1361332	0006110427	S	1938	GGATTTCGATGACTACCTCAACTGCCTGGTGCGGCTGGAGAATGCGAGCC				19q12	PREDICTED: Rattus norvegicus calpain 9 (nCL-4) (Capn9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence TAS]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645917-S	ILMN_263771	RGD1306816_PREDICTED	XM_001079950.1	XM_001079950.1		296179	109470741	XM_001079950.1	RGD1306816_predicted	XP_001079950.1	ILMN_1360527	0002350706	S	2459	TCCGGCAGGTGGCAATCGAGTTTGACCAAAATGTCTCCATCGCATTCACC				3q36	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 42; UNC-112 related protein 1; kindlin 1 (predicted), transcript variant 5 (RGD1306816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646156-S	ILMN_263771	RGD1306816_PREDICTED	XM_001079950.1	XM_001079950.1		296179	109470741	XM_001079950.1	RGD1306816_predicted	XP_001079950.1	ILMN_1355160	0003610632	S	519	CAAGGCGGCCTCTAAGGAAGCAGCTGTCCACGTGCGGGCTGCAGACAGGA				3q36	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 42; UNC-112 related protein 1; kindlin 1 (predicted), transcript variant 5 (RGD1306816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557183-S	ILMN_299390	LAPTM4B	NM_001013174.1	NM_001013174.1		315047	61557183	NM_001013174.1	Laptm4b	NP_001013192.1	ILMN_1358890	0000510253	S	1358	CCCTGTGTGAAAGGGGGACCAGCTTGCTTGGCTCAGAAAAACTCAGACTC	7	+	69697479-69697528	7q22	Rattus norvegicus lysosomal-associated protein transmembrane 4B (Laptm4b), mRNA.	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_13591960-S	ILMN_269865	GPT	NM_031039.1	NM_031039.1		81670	13591960	NM_031039.1	Gpt	NP_112301.1	ILMN_1364277	0002360497	S	1595	GTACTCCTGAAGCCACTGCTAGGGCCACACTGGACAGTCTCTGACGCAAC	7	+	114748757-114748766:114748767-114748806	7q34	Rattus norvegicus glutamic-pyruvate transaminase (alanine aminotransferase) (Gpt), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: L-alanine + 2-oxoglutarate = pyruvate + L-glutamate [goid 4021] [evidence IEA]; Catalysis of the reaction: L-alanine + 2-oxoglutarate = pyruvate + L-glutamate [goid 4021] [evidence NAS]; Catalysis of the reaction: L-alanine + 2-oxoglutarate = pyruvate + L-glutamate [goid 4021] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence NAS]	Gpt	Gpt
Rattus norvegicus	RefSeq	GI_62663642-S	ILMN_60559	GABPB1_PREDICTED	XM_344606.2	XM_344606.2		364738	62663642	XM_344606.2	Gabpb1_predicted	XP_344607.1	ILMN_1374415	0002970195	S	2056	GCTTTTCTGGCAATTGCAGAGTGAGGACATGAGACTGCTCTGTGCCTTCC				17q12.1	PREDICTED: Rattus norvegicus GA repeat binding protein, beta 1 (predicted) (Gabpb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717984-S	ILMN_59195	LOC501269	XM_576685.1	XM_576685.1		501269	62717984	XM_576685.1	LOC501269	XP_576685.1	ILMN_1361570	0004920082	S	2289	GACCTCTTGATAAGAGGCATGGCAGACACGTGCTCCACTATGTTCATAGC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC501269), mRNA.					
Rattus norvegicus	RefSeq	GI_62642902-S	ILMN_67047	DEPDC1B_PREDICTED	XM_226798.4	XM_226798.4		310074	109464374	XM_226798.4	Depdc1b_predicted	XP_226798.3	ILMN_1354339	0004050148	S	1298	GGAGCGTGTGGCTCACCTGCGAAGAGTGCAGATAAAATACCCAGGAGCTG	2	+	39695290-39695320:39697428-39697446	2q14	PREDICTED: Rattus norvegicus DEP domain containing 1B (predicted) (Depdc1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978738-S	ILMN_302700	CYP2A1	NM_012692.1	NM_012692.1		24894	6978738	NM_012692.1	Cyp2a1	NP_036824.1	ILMN_1361745	0005290746	S	1399	CAAGTTCCCAATGAAACTAGAAGACATCAACGAGTCCCCCAAACCCTTGG	1	+	82019994-82020043	1q21	Rattus norvegicus cytochrome P450 IIA1 (hepatic steroid hydroxylase IIA1) gene (Cyp2a1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids [goid 9804] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2 [goid 8395] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]	RATCYP2A1; Shdl	RATCYP2A1; Shdl
Rattus norvegicus	RefSeq	GI_13928871-S	ILMN_280334	CASP9	NM_031632.1	NM_031632.1		58918	13928871	NM_031632.1	Casp9	NP_113820.1	ILMN_1371435	0006940487	S	1942	GGCCCAGTGTGAATACCTGGATCTGGACTGCGTCTCATCAAAGTTTCCAG	5	+	160721387-160721436	5q36	Rattus norvegicus caspase 9, apoptosis-related cysteine peptidase (Casp9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Casp-9-CTD; Ice-Lap6; Mch6; Casp9_v1; Apaf3	Casp-9-CTD; Ice-Lap6; Mch6; Casp9_v1; Apaf3
Rattus norvegicus	RefSeq	GI_12408303-S	ILMN_269704	FABP9	NM_022854.1	NM_022854.1		64822	12408303	NM_022854.1	Fabp9	NP_074045.1	ILMN_1349079	0001170452	S	460	GGCCACCACAGAGAACTTGCTGCTGAAGAAACTCAGCTCCAGGGACAGTG	2	+	93550723-93550772	2q23	Rattus norvegicus fatty acid binding protein 9, testis (Fabp9), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The formation of the acrosome from the spermatid Golgi [goid 1675] [evidence IEP]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Tlbp	Tlbp
Rattus norvegicus	RefSeq	GI_62667256	ILMN_295069	RGD1564204_PREDICTED	XM_001069788.1	XM_001069788.1		308656	109512345	XM_001069788.1	RGD1564204_predicted	XP_001069788.1	ILMN_1649964	0004230047	S	1435	GCTGTACTCTCTGCTATTCTGCCAGCCCTATCTAAGTGTTCCCATCTGCG					PREDICTED: Rattus norvegicus similar to preferentially expressed antigen in melanoma-like 3 (predicted) (RGD1564204_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660359-S	ILMN_64837	LOC501908	XM_577332.1	XM_577332.1		501908	62660359	XM_577332.1	LOC501908	XP_577332.1	ILMN_1357087	0002190075	S	1071	TGCCTACCAATCCAAAAGAGGGCACACCCAGCCAGCAACAGAATCCCGCT					PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 3 (LOC501908), mRNA.					
Rattus norvegicus	RefSeq	GI_62643288-S	ILMN_63529	EVI1_PREDICTED	XM_226987.4	XM_226987.4		294924	109464672	XM_226987.4	Evi1_predicted	XP_226987.4	ILMN_1363016	0002030402	S	3901	AAGGACCAAGGTGAGCCGTCCTGTGTGTGGGAGTGCCCAATAGTGTTTGG	2	-	114814902-114814951	2q24	PREDICTED: Rattus norvegicus ecotropic viral integration site 1 (predicted) (Evi1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653197-S	ILMN_63552	LOC497827	XM_579475.1	XM_579475.1		497827	62653197	XM_579475.1	LOC497827	XP_579475.1	ILMN_1365460	0003170519	S	11248	GATCAGGAAAGGAGCTGGGCAGTTGCACCATTGAAGATCTCTCTCCCTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_023024 (LOC497827), mRNA.					
Rattus norvegicus	RefSeq	GI_27673534-S	ILMN_161743	LOC305667	XM_223775.1	XM_223775.1			27673534	XM_223775.1	LOC305667		ILMN_2039204	0005670424	S	607	CAGTGCATGCAGGGATCCAAGCGGCTCTCAGATTTGCACAGCTGGCATAC										
Rattus norvegicus	RefSeq	GI_62656919-S	ILMN_55017	LOC497989	XM_579765.1	XM_579765.1		497989	62656919	XM_579765.1	LOC497989	XP_579765.1	ILMN_1374587	0004070056	S	146	TGAGGCTCCAAGGGTCTTAGCACAGAAACCGCCCACTGTAGGAGTCCCCA					PREDICTED: Rattus norvegicus LOC497989 (LOC497989), mRNA.					
Rattus norvegicus	RefSeq	GI_62644127-S	ILMN_281647	PHTF1	XM_001065811.1	XM_001065811.1		252962	109467324	XM_001065811.1	Phtf1	XP_001065811.1	ILMN_1357786	0005220458	S	2676	GAGACTCGGGACTGTTTCGTGAGTCAGGACATTTATCTTGGAGCCTCCGG				2q34	PREDICTED: Rattus norvegicus putative homeodomain transcription factor 1 (Phtf1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]			
Rattus norvegicus	RefSeq	GI_62643747-S	ILMN_62845	LOC310631	XM_227403.3	XM_227403.3		310631	62643747	XM_227403.3	LOC310631	XP_227403.3	ILMN_1352863	0002510066	S	2556	GGGTAGGTCTTCTGGGGTGGAGGAGGGTGTCAATTAAGGGCTCACAACTC				2q34	PREDICTED: Rattus norvegicus similar to ring finger and KH domain containing 2 (LOC310631), mRNA.					
Rattus norvegicus	RefSeq	GI_62717860-S	ILMN_52449	LOC501239	XM_576658.1	XM_576658.1		501239	62717860	XM_576658.1	LOC501239	XP_576658.1	ILMN_1367289	0001400131	S	991	GGGACCTGGTAGAGTTAGTGGGACTTGGGAGTAGGAATGGCAGAAAGGGC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501239), mRNA.					
Rattus norvegicus	RefSeq	GI_47575858-S	ILMN_280198	PSEN1	NM_019163.2	NM_019163.2		29192	47575858	NM_019163.2	Psen1	NP_062036.2	ILMN_1351184	0001850131	S	2711	AACTAGGGGCTGGGGGACAGCTCCAAATACAATGCCTGTCTTGCCCTCGG	6	+	107777465-107777514	6q31	Rattus norvegicus presenilin 1 (Psen1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IDA]; A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm [goid 35253] [evidence IEA]; A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm [goid 35253] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43227] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence IEA]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence IEA]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence IEA]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; The process whereby precursor cell type acquires the specialized features of a hemopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells [goid 2244] [evidence IEA]; The process whereby precursor cell type acquires the specialized features of a hemopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells [goid 2244] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response [goid 2286] [evidence IEA]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response [goid 2286] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte lineage [goid 2573] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte lineage [goid 2573] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence IMP]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Any process that modulates the frequency, rate or extent of EGF receptor activity [goid 7176] [evidence IEA]; Any process that modulates the frequency, rate or extent of EGF receptor activity [goid 7176] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; The series of successive proteolytic cleavage events that take place after a Notch receptor binds a ligand, and which lead to the release of the Notch Intracellular Domain (NICD), which is the active form of the receptor [goid 7220] [evidence IEA]; The series of successive proteolytic cleavage events that take place after a Notch receptor binds a ligand, and which lead to the release of the Notch Intracellular Domain (NICD), which is the active form of the receptor [goid 7220] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence ISS]; The directed movement of choline into, out of, within or between cells. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 15871] [evidence ISS]; The process by which synaptic vesicles are directed to specific destination membranes, mediated by molecules at the vesicle membrane and target membrane surfaces [goid 16080] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IDA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The orderly movement of cells from one site to another in the cerebral cortex [goid 21795] [evidence ISS]; The process whereby a neuroblast acquires specialized structural and/or functional features of a Cajal-Retzius cell, one of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene [goid 21870] [evidence ISS]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence IEA]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings [goid 32469] [evidence ISS]; The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis [goid 35282] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence ISS]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence NAS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42987] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein binding [goid 43393] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification [goid 44267] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence IEA]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The process by which the anatomical structures of brain are generated and organized. Morphogenesis pertains to the creation of form. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 48854] [evidence IEA]; The process by which the anatomical structures of brain are generated and organized. Morphogenesis pertains to the creation of form. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 48854] [evidence ISS]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence IEA]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence ISS]; The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances [goid 50673] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of coagulation [goid 50820] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of coagulation [goid 50820] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence IEA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the smooth endoplasmic reticulum of a cell or between the smooth endoplasmic reticulum and its surroundings [goid 51563] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within the smooth endoplasmic reticulum of a cell or between the smooth endoplasmic reticulum and its surroundings [goid 51563] [evidence ISS]; The process leading to the attainment of the full functional capacity of a protein [goid 51604] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51966] [evidence ISS]; Any process that modulates the establishment or extent of a resting potential, the electrical charge across the plasma membrane, with the interior of the cell negative with respect to the exterior. The resting potential is the membrane potential of a cell that is not stimulated to be depolarized or hyperpolarized [goid 60075] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758371-S	ILMN_268338	DPEP1	NM_053591.1	NM_053591.1		94199	16758371	NM_053591.1	Dpep1	NP_446043.1	ILMN_1373724	0005290593	S	2051	CTTCTGTGTGTTACCTAGCACGGTTGGCAGTGTGAAGCAGGGTGCCAGGC	19	+	53518957-53519006	19q12	Rattus norvegicus dipeptidase 1 (renal) (Dpep1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence TAS]; Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981501-S	ILMN_282111	SBP	NM_013024.1	NM_013024.1		25540	6981501	NM_013024.1	Sbp	NP_037156.1	ILMN_1349143	0000940148	S	1136	GACCAGGTGACCCTGGGCTGGAGTAGGCAAAGTCAAATGCCCTTTATCTC				10q12	Rattus norvegicus spermine binding protein (Sbp), mRNA.			Interacting selectively with polyamines, organic compounds containing two or more amino groups [goid 19808] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_57114241-S	ILMN_267781	V1RM3	NM_001008934.1	NM_001008934.1		292607	57114241	NM_001008934.1	V1rm3	NP_001008934.1	ILMN_1371294	0004610095	S	565	ACCCTAAGTGATACAATATGTCTGGTCATCATGGCCTTGGCCAGTGGCTC	1	+	72398099-72398148	1q21	Rattus norvegicus vomeronasal 1 receptor, M3 (V1rm3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655665-S	ILMN_65255	LOC501674	XM_577071.1	XM_577071.1		501674	62655665	XM_577071.1	LOC501674	XP_577071.1	ILMN_1363190	0003870056	S	4557	GCTTTTGTGGGCAGATCAAGCACAGAGAGTGAACCCATGACAAGCCCCGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933437K13 (LOC501674), mRNA.					
Rattus norvegicus	RefSeq	GI_62647223-S	ILMN_279753	RGD1306936_PREDICTED	XM_001055149.1	XM_001055149.1		297082	109473464	XM_001055149.1	RGD1306936_predicted	XP_001055149.1	ILMN_1372302	0002640519	S	507	CTGGCTGTGTGTGGACTTCGGCAGTATGGTGATCCATTTGATGCTTCCGG				4q24	PREDICTED: Rattus norvegicus similar to chromosome 7 open reading frame 30 (predicted) (RGD1306936_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865395-A	ILMN_267514	FIGNL1	NM_001011913.1	NM_001011913.1		289777	58865395	NM_001011913.1	Fignl1	NP_001011913.1	ILMN_1376493	0002230204	S	2242	GGCAGAAGCTGCCATCTAACAGTTTGGATAGGAAGCATGAAAGCTTGGGT	14	-	92686043-92686092	14q21	Rattus norvegicus fidgetin-like 1 (Fignl1), mRNA.		The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648325-S	ILMN_63206	LOC500362	XM_575719.1	XM_575719.1		500362	62648325	XM_575719.1	LOC500362	XP_575719.1	ILMN_1356133	0001230154	S	2247	CTCACGCCAGGGTCCGTACCACGCATGCACAGAAGAACCACACAGGCATT				4q44	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933403M22 (LOC500362), mRNA.					
Rattus norvegicus	RefSeq	GI_62650298-S	ILMN_52713	ATP6V1E2_PREDICTED	XM_345632.3	XM_345632.3		366545	109477901	XM_345632.3	Atp6v1e2_predicted	XP_345633.2	ILMN_1351767	0002060181	S	654	ACTTGTCTTCCAATGCTGCCGGAGGGGTGGAGGTCTATAGCAGCGATCGG	6	-	10392024-10392073	6q12	PREDICTED: Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit E2 (predicted) (Atp6v1e2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658330	ILMN_65443	RGD1564816_PREDICTED	XM_573341.2	XM_573341.2		498130	109494978	XM_573341.2	RGD1564816_predicted	XP_573341.2	ILMN_1650572	0006510364	S	3258	ACCCTGGTGTCCCTGTCTGTGGAGCATGAAGAAGCCCAGCTCATGGGTGA	12	+	3691606-3691655	12p12	PREDICTED: Rattus norvegicus similar to Serologically defined colon cancer antigen 13 (predicted) (RGD1564816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758585-S	ILMN_278806	SUCLG1	NM_053752.1	NM_053752.1		114597	16758585	NM_053752.1	Suclg1	NP_446204.1	ILMN_1372406	0007040064	S	1334	AGAAGGATGGGCCACGCAGGGGCGATTATTGCTGGAGGAAAAGGTGGCGC				4q33	Rattus norvegicus succinate-CoA ligase, GDP-forming, alpha subunit (Suclg1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ADP + phosphate + acetyl-CoA + oxaloacetate = ATP + citrate + CoA [goid 3878] [evidence IEA]; Catalysis of the reaction: ATP + succinate + CoA = ADP + succinyl-CoA + phosphate [goid 4775] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666762	ILMN_274354	HCCS_PREDICTED	XM_001065465.1	XM_001065465.1		317444	109511685	XM_001065465.1	Hccs_predicted	XP_001065465.1	ILMN_1650651	0006520465	S	1952	CCTTTAACCCCAGCACTCCATAGATGTCTGAGTTTGAGGCCAGCCTGCTC				Xq21	PREDICTED: Rattus norvegicus holocytochrome c synthetase (predicted) (Hccs_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869703-S	ILMN_54213	RGD1562558_PREDICTED	XM_223985.3	XM_223985.3		290019	109501572	XM_223985.3	RGD1562558_predicted	XP_223985.3	ILMN_1354497	0001850717	S	23	AGACTTTTATTCAGAAGTGTGCCCAGTGTCACACTGTGGAGAAGGGAGGC	15	-	26310346-26310395	15p14	PREDICTED: Rattus norvegicus similar to Cytochrome c, somatic (predicted) (RGD1562558_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646609-S	ILMN_49923	LOC362297	XM_342610.2	XM_342610.2		362297	62646609	XM_342610.2	LOC362297	XP_342611.2	ILMN_1373330	0007050128	S	4127	GCCTGAGCCCCAGAAGCAGAAAGATCCTGTGAAGAAGGACAGAGGGAGCC				4q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC20460 (predicted) (LOC362297), mRNA.					
Rattus norvegicus	RefSeq	GI_62665695-S	ILMN_61738	LOC361805	XM_342099.2	XM_342099.2		361805	62665695	XM_342099.2	LOC361805	XP_342100.2	ILMN_1358716	0002450358	S	122	CCCCTTGCCCGTCTTAGGCTGTAGGGGGAGTAACTTGATGACAGTGAATG				20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900010M23 (predicted) (LOC361805), mRNA.					
Rattus norvegicus	RefSeq	GI_62651370-S	ILMN_60254	LOC314509	XM_234661.3	XM_234661.3		314509	62651370	XM_234661.3	LOC314509	XP_234661.3	ILMN_1370032	0002060309	S	1945	AGATGCACACAGTGTCCACTCTCGAGTCCAGCTACAGCAGTTTGGAGCTG				6q33	PREDICTED: Rattus norvegicus similar to single chain Fv antibody fragment scFv 7-10A (LOC314509), mRNA.					
Rattus norvegicus	RefSeq	GI_62647590-S	ILMN_50792	LOC502835	XM_578335.1	XM_578335.1		502835	62647590	XM_578335.1	LOC502835	XP_578335.1	ILMN_1369976	0006940066	S	102	GGAGAGAGGGTTTCCATCTCCTGTAGGGCCAGTGAAGGGGTCAATTCATA					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain VK-1 (LOC502835), mRNA.					
Rattus norvegicus	RefSeq	GI_62666064-S	ILMN_265135	SIRT1_PREDICTED	XM_001080493.1	XM_001080493.1		309757	109510033	XM_001080493.1	Sirt1_predicted	XP_001080493.1	ILMN_1359543	0006760138	S	2280	GGAGTGTGCTGGAGGATCTGGAGCTGACGGAGGGGATCAAGAGGCAGTTA				20p11	PREDICTED: Rattus norvegicus sirtuin 1 ((silent mating type information regulation 2, homolog) 1 (S. cerevisiae) (predicted) (Sirt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646070-S	ILMN_294363	DUSP15_PREDICTED	XM_001060408.1	XM_001060408.1		362238	109471053	XM_001060408.1	Dusp15_predicted	XP_001060408.1	ILMN_1369496	0000460064	S	721	TTTGGCTGGGCAAACTCCCAGAAGCTTCGCCGGCAGCTGGAGGAGCGCTT				3q41	PREDICTED: Rattus norvegicus dual specificity phosphatase-like 15 (predicted) (Dusp15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659395-S	ILMN_66348	LOC289401	XM_212735.3	XM_212735.3		289401	62659395	XM_212735.3	LOC289401	XP_212735.1	ILMN_1365054	0004280707	S	1	CCTGCGTTTGTATGGCTCCCGCAAAGAAGGGTGGCAAGAAGAAGGGCCGT				13q13	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC289401), mRNA.					
Rattus norvegicus	RefSeq	GI_62663305-S	ILMN_288662	IARS_PREDICTED	XM_001055989.1	XM_001055989.1		306804	109505544	XM_001055989.1	Iars_predicted	XP_001055989.1	ILMN_1366334	0005860300	S	4093	CCTTAAACACCTATGCAGTCCTGTGGGGGAGGGTCCTAACGTTACCTCAG				17p14	PREDICTED: Rattus norvegicus isoleucine-tRNA synthetase (predicted) (Iars_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645399-S	ILMN_263119	RGD1310685_PREDICTED	XM_001069036.1	XM_001069036.1		362164	109470252	XM_001069036.1	RGD1310685_predicted	XP_001069036.1	ILMN_1364978	0006940113	S	1815	CTATGGCAGAAGACTTGGACTCCTTACCAGAGAAGCTGGCTGTGCATGAG				3q24	PREDICTED: Rattus norvegicus similar to hypothetical protein D2Ertd391e (predicted) (RGD1310685_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639174-S	ILMN_274698	B3GALT7_PREDICTED	XM_001069916.1	XM_001069916.1		308440	109461419	XM_001069916.1	B3galt7_predicted	XP_001069916.1	ILMN_1358161	0005080647	S	1462	GCAGCAGCCCGAGTAGCGCCCTTCCCCTTTGATGATGTCTACACTGGTTT				1q21	PREDICTED: Rattus norvegicus UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 7 (predicted) (B3galt7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576814-S	ILMN_299565	OLR198	NM_001001033.1	NM_001001033.1		405919	47576814	NM_001001033.1	Olr198	NP_001001033.1	ILMN_1350056	0004280725	S	603	CAGGGACTACCAGTTGACTTTGGCCTGGTTTATACTTGGAATTGACATGA	1	+	163005336-163005385	1q33	Rattus norvegicus olfactory receptor 198 (Olr198), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr198	Olr198
Rattus norvegicus	RefSeq	GI_29789266-S	ILMN_293993	DDN	NM_030993.1	NM_030993.1		25113	29789266	NM_030993.1	Ddn	NP_112255.1	ILMN_2040467	0007210025	S	3360	CCCTGGGGCACTTCCTGTGTGTCTGCCACTTACTAGCCATGTGACCTTGG	7	-	137572713-137572762	7q36	Rattus norvegicus dendrin (Ddn), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence TAS]			Den	Den
Rattus norvegicus	RefSeq	GI_62650814	ILMN_274114	RGD1563544_PREDICTED	XR_009393.1	XR_009393.1		366665	109479511	XR_009393.1	RGD1563544_predicted		ILMN_1649891	0004060576	S	1493	CTGAGCTCTGGAGTTGGCTGTTCCCTGCTAGAAGCACAAGATGCCCTAGA				6q24	PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 135 (predicted) (RGD1563544_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655941-S	ILMN_262701	RGD1564190_PREDICTED	XM_001064411.1	XM_001064411.1		497881	109490479	XM_001064411.1	RGD1564190_predicted	XP_001064411.1	ILMN_1372802	0006180601	S	1286	CCCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAA				10q12	PREDICTED: Rattus norvegicus similar to HOX11L2 (predicted) (RGD1564190_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506458-S	ILMN_268907	CACNG1	NM_019255.1	NM_019255.1		29658	9506458	NM_019255.1	Cacng1	NP_062128.1	ILMN_1360832	0002350450	S	704	GGTGAGGAGGGAGTCTCACATCTGCCCTGACTTCTTGTCTATCGTGTGTC	10	-	97105775-97105824	10q32.1	Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 1 (Cacng1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence TAS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Cacng	Cacng
Rattus norvegicus	RefSeq	GI_62641012-S	ILMN_286143	PPME1	XM_001066863.1	XM_001066863.1		361613	109462505	XM_001066863.1	Ppme1	XP_001066863.1	ILMN_1360708	0004210348	S	2601	GCCTCCTGAAGCCCATCTTTCTGTGACTGTCTTAGGTGACTGTGTAGCCC				1q32	PREDICTED: Rattus norvegicus protein phosphatase methylesterase 1 (Ppme1), mRNA.		The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6482] [evidence IEA]; The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6482] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the enzyme protein phosphatase 2A [goid 51721] [evidence IEA]; Interacting selectively with the enzyme protein phosphatase 2A [goid 51721] [evidence ISS]; Catalysis of the reaction: C-terminal protein amino acid methyl ester + H2O = protein amino acid + methanol [goid 51722] [evidence IEA]; Catalysis of the reaction: C-terminal protein amino acid methyl ester + H2O = protein amino acid + methanol [goid 51722] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652345-S	ILMN_265843	WDSOF1_PREDICTED	XM_001081959.1	XM_001081959.1		362902	109480717	XM_001081959.1	Wdsof1_predicted	XP_001081959.1	ILMN_1373769	0000460400	S	1277	GCCAGATTCAGGAGCAGCGTGTTATGAAGGAGGCTCGTCGCCGCAAGGAA	7	+	74701935-74701980:74703786-74703789	7q22	PREDICTED: Rattus norvegicus WD repeats and SOF domain containing 1 (predicted) (Wdsof1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577482-S	ILMN_265838	OLR480	NM_001000685.1	NM_001000685.1		404890	47577482	NM_001000685.1	Olr480	NP_001000685.1	ILMN_1370491	0005890110	S	465	TGGACTTGCACAGGCAGTGGAGACCTTCCGCTTGTCTTTTTGTGGCTCCA	3	-	69329281-69329330	3q24	Rattus norvegicus olfactory receptor 480 (Olr480), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr480	Olr480
Rattus norvegicus	RefSeq	GI_19705436-S	ILMN_295646	EPHA7	NM_134331.1	NM_134331.1		171287	19705436	NM_134331.1	Epha7	NP_599158.1	ILMN_1363367	0004050239	S	3089	TATGCGGGCACAGATGCTGCACTTACACGGAACCGGCATCCAAGTGTGAC	5	+	44878213-44878261:44878262-44878262	5q21	Rattus norvegicus Eph receptor A7 (Epha7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; The process by which the anatomical structures of branches in a nerve are generated and organized. Morphogenesis pertains to the creation of form. This term refers to an anatomical structure (nerve) not a cell (neuron) [goid 48755] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence NAS]; Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal [goid 45499] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9883737] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638202-S	ILMN_267788	LRP11_PREDICTED	XM_001068295.1	XM_001068295.1		292462	109460420	XM_001068295.1	Lrp11_predicted	XP_001068295.1	ILMN_1354504	0003710632	S	2807	GAGATGAACGGTGTGAGTGAACTCACGTACACTCTGTGATGATGTCCGGC				1p13	PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 11 (predicted) (Lrp11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659613-S	ILMN_284240	RGD1306783	NM_001025668.1	NM_001025668.1		304928	71043755	NM_001025668.1	RGD1306783	NP_001020839.1	ILMN_1374031	0001660369	S	1257	GAGACACTCCTCAGACTATTGAGTAGGAACGGCCGGGTGCTTTTGGCCAG	13	+	79756929-79756978	13q22	Rattus norvegicus similar to 2810422O20Rik protein (RGD1306783), mRNA.			Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]	MGC112676	MGC112676
Rattus norvegicus	RefSeq	GI_8393822-S	ILMN_299524	NEFM	NM_017029.1	NM_017029.1		24588	8393822	NM_017029.1	Nefm	NP_058725.1	ILMN_1370410	0000610037	S	2790	GCCAGTTTCCTAAGCTGTTGAAAGAGGGGCACTCGGGGGGATGTCTTGAG	15	-	47698597-47698646	15p12	Rattus norvegicus neurofilament, medium polypeptide (Nefm), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence IEA]; A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter [goid 5883] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The directed movement of organelles or molecules along microtubules in nerve cell axons [goid 8088] [evidence IEA]; The directed movement of organelles or molecules along microtubules in nerve cell axons [goid 8088] [evidence ISS]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence IEA]; Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained [goid 31133] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins [goid 45104] [evidence ISS]; The formation of the bundles of intermediate filaments, known as tonofilaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs [goid 45110] [evidence IEA]; The formation of the bundles of intermediate filaments, known as tonofilaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs [goid 45110] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Nfm; Nefm	Nfm; Nefm
Rattus norvegicus	RefSeq	GI_8394203-S	ILMN_267097	SLC6A18	NM_017163.1	NM_017163.1		29323	8394203	NM_017163.1	Slc6a18	NP_058859.1	ILMN_1353373	0002900070	S	2026	GTATTGCCCAGTGGATGTCTGTGTGATGCCATTCCTCTGAAGCTAGGTCC	1	+	30428748-30428797	1p11	Rattus norvegicus solute carrier family 6, member 18 (Slc6a18), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEP]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell [goid 6972] [evidence NAS]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell [goid 6972] [evidence IEP]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Xtrp2; Rosit; MGC93507	Xtrp2; Rosit; MGC93507
Rattus norvegicus	RefSeq	GI_62664294-S	ILMN_283523	RGD1565779_PREDICTED	XR_008124.1	XR_008124.1		502155	109507155	XR_008124.1	RGD1565779_predicted		ILMN_1360722	0004280121	S	1345	GCTTGCGTGGAGAGAGGCGGTCAATGGAAGGAGCAGGCAGTGCTGAAACT				18p11	PREDICTED: Rattus norvegicus similar to hypothetical protein E230025N22 (predicted) (RGD1565779_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656163-S	ILMN_51834	SREBF1	XM_213329.4	XM_213329.4		78968	109488157	XM_213329.4	Srebf1	XP_213329.4	ILMN_1363480	0005360239	S	3515	AGGATCGTGCCGACCTCTAGTGGCAGATCTGGAGATTGCAGAGGCTGCAC	10	-	46462436-46462485	10q22	PREDICTED: Rattus norvegicus sterol regulatory element binding factor 1 (Srebf1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence TAS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [pmid 16407292] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism [goid 32810] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [pmid 16407292] [evidence ISS]; Interacting selectively with the sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism [goid 32810] [pmid 16407292] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652822-S	ILMN_277510	LOC687237	XM_001077650.1	XM_001077650.1		687237	109482637	XM_001077650.1	LOC687237	XP_001077650.1	ILMN_1362331	0002060348	S	563	CGTCGGCAGAAGGGTCAAGGAAAGCCCTCAGCCTCACCTCTCATGGTTTG					PREDICTED: Rattus norvegicus similar to CG17680-PA (LOC687237), mRNA.					
Rattus norvegicus	RefSeq	GI_62651436-S	ILMN_63922	LOC503050	XM_578573.1	XM_578573.1		503050	62651436	XM_578573.1	LOC503050	XP_578573.1	ILMN_1354923	0005390133	S	609	TGCGAGCACTGGTGGGAGAGCTGTGAGCACTGGAGGGAGAGCTGTGAGCA					PREDICTED: Rattus norvegicus similar to nitric oxide synthase (LOC503050), mRNA.					
Rattus norvegicus	RefSeq	GI_51854208-S	ILMN_279803	RFFL	NM_001004068.1	NM_001004068.1		282844	51854208	NM_001004068.1	Rffl	NP_001004068.1	ILMN_1367792	0005360402	S	1365	GGCTCGGGGTTGGTCCTATGCACAAGGGCAGTCTATTGTGAGAAACTGGC	10	-	71025277-71025326	10q26	Rattus norvegicus ring finger and FYVE like domain containing protein (Rffl), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94279	MGC94279
Rattus norvegicus	RefSeq	GI_62647198-S	ILMN_278142	RGD1306209	XM_001053818.1	XM_001053818.1		312303	109473445	XM_001053818.1	RGD1306209	XP_001053818.1	ILMN_1372105	0005550128	S	3817	GCAGCCACTGGTCCTCTTGCCCAAATGGGTAATGATTCCCTGAAGAGGGC				4q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31413 (RGD1306209), mRNA.					
Rattus norvegicus	RefSeq	GI_51491887-S	ILMN_272199	MYC	NM_012603.2	NM_012603.2		24577	51491887	NM_012603.2	Myc	NP_036735.2	ILMN_1371389	0006550138	S	2000	CACAACCTTGGCTGGGGCTTTGGGACTTCAGCCATAATGTTAACTGCCTC	7	+	98957726-98957775	7q33	Rattus norvegicus myelocytomatosis oncogene (Myc), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence ISS]	The process of apoptosis in B cells [goid 1783] [evidence IEA]; The process of apoptosis in B cells [goid 1783] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IMP]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IEA]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The synthesis of RNA on a template of DNA [goid 6351] [evidence IDA]; Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IMP]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IDA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Any process that modulates the rate or extent of progress through the mitotic cell cycle [goid 7346] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence IEA]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence IEA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 8634] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 8634] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; The set of specific processes that generate the ability of an organism to cause disease in another [goid 9405] [evidence TAS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence IEA]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active [goid 43279] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active [goid 43279] [evidence ISS]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence IEA]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence IEA]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	MGC105490; RNCMYC; c-myc; mMyc	MGC105490; RNCMYC; c-myc; mMyc
Rattus norvegicus	RefSeq	GI_62662106-S	ILMN_64039	LOC364490	XM_344469.2	XM_344469.2		364490	62662106	XM_344469.2	LOC364490	XP_344470.2	ILMN_1353016	0006840025	S	760	GCCACACAGGGTCAGTGGCTACCATACTGAGTGCTGCAGAGAGGGAGAAT					PREDICTED: Rattus norvegicus similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (HSP-65) (LOC364490), mRNA.					
Rattus norvegicus	RefSeq	GI_46485158-S	ILMN_275638	IQSEC3	NM_207617.1	NM_207617.1		404781	46485158	NM_207617.1	Iqsec3	NP_997500.1	ILMN_1355804	0002940164	S	7247	GAGTGACAGCTCTCTGGGGACAGGCAGGGTGGCCGCACTCAGTAACTAAT	4	-	157807856-157807905	4q42	Rattus norvegicus IQ motif and Sec7 domain 3 (Iqsec3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]	sag	sag
Rattus norvegicus	RefSeq	GI_62653957-S	ILMN_55941	LOC503206	XM_578731.1	XM_578731.1		503206	62653957	XM_578731.1	LOC503206	XP_578731.1	ILMN_1350988	0006620601	S	609	TTCCTAGCTTCTCTGGAAGCCGTGGGTCTCAGTCCAGGGGTCACTCCAGT					PREDICTED: Rattus norvegicus similar to Oct binding factor 1 (LOC503206), mRNA.					
Rattus norvegicus	RefSeq	GI_62656891-S	ILMN_53494	RGD1562142_PREDICTED	XM_573182.2	XM_573182.2		497986	109488878	XM_573182.2	RGD1562142_predicted	XP_573182.1	ILMN_1373171	0004150095	S	1730	TCCTACCCCCTCCCCAAAGCCACTGGAAGGAGCACATACTACCTAGAAGT	10	+	85033377-85033426	10q31	PREDICTED: Rattus norvegicus similar to homeotic protein Hox 2.2 - mouse (predicted) (RGD1562142_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660714-S	ILMN_51182	SMTN_PREDICTED	XM_214078.3	XM_214078.3		289734	62660714	XM_214078.3	Smtn_predicted	XP_214078.3	ILMN_1358023	0001580152	S	3082	GGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGATC				14q21	PREDICTED: Rattus norvegicus smoothelin (predicted) (Smtn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641119	ILMN_47718	TMEM9B_PREDICTED	XM_215038.4	XM_215038.4		293415	109459218	XM_215038.4	Tmem9b_predicted	XP_215038.1	ILMN_1650350	0006760647	S	2514	AGCCCAAGCCTTCCTGGATGAGTGACATACACATACTGGTCAGCCTCTCC	1	-	167354680-167354729	1q33	PREDICTED: Rattus norvegicus TMEM9 domain family, member B (predicted) (Tmem9b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654641-S	ILMN_67953	RGD1563347_PREDICTED	XM_576510.2	XM_576510.2		501095	109485685	XM_576510.2	RGD1563347_predicted	XP_576510.2	ILMN_1366707	0001980551	S	1470	CCAAGAAGAGGGAGTCCAAGTTCCAGTGGCGGTTCTCCCGGAACGACATC	9	+	6199584-6199603:6206147-6206176	9q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310015N21 (predicted) (RGD1563347_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659771-S	ILMN_68480	LOC498288	XM_573515.1	XM_573515.1		498288	62659771	XM_573515.1	LOC498288	XP_573515.1	ILMN_1350643	0000510731	S	2514	GTGTCCGGCTTGGGACCTTTGGCTATCTTGTGGCTATGTTGGACTTCTGC				13q24	PREDICTED: Rattus norvegicus similar to Ifi204 protein (LOC498288), mRNA.					
Rattus norvegicus	RefSeq	GI_16758753-S	ILMN_273979	ATP6V1F	NM_053884.1	NM_053884.1		116664	16758753	NM_053884.1	Atp6v1f	NP_446336.1	ILMN_1350307	0002120008	S	543	CTGATGTTCAGGTCCAGGCTGGGTAGGGAAAGAAAGGCCAACCATCTCTC	4	+	56349984-56350033	4q22	Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit F (Atp6v1f), mRNA.	A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate [goid 42625] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	Atp6s14	Atp6s14
Rattus norvegicus	RefSeq	GI_47577278-S	ILMN_284277	OLR400	NM_001000379.1	NM_001000379.1		296661	47577278	NM_001000379.1	Olr400	NP_001000379.1	ILMN_1362298	0002480279	S	522	CCCCCACTATTTCTGTGACCTCTCTACTTTGCTGAAACTGTCTAGCTCAG	3	+	15793840-15793889	3p11	Rattus norvegicus olfactory receptor 400 (Olr400), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr400	Olr400
Rattus norvegicus	RefSeq	GI_62718701-S	ILMN_54807	LOC501453	XM_576863.1	XM_576863.1		501453	62718701	XM_576863.1	LOC501453	XP_576863.1	ILMN_1363806	0007050164	S	650	GAAATTTCCAGCCCTTTACAGCACCCACAAAGGCTGTGCTCAGGACCCTG					PREDICTED: Rattus norvegicus similar to xenotropic and polytropic murine leukemia virus receptor (LOC501453), mRNA.					
Rattus norvegicus	RefSeq	GI_62646172-S	ILMN_48944	LOC502675	XM_578172.1	XM_578172.1		502675	62646172	XM_578172.1	LOC502675	XP_578172.1	ILMN_1353701	0001340184	S	602	TGTGGACACTAACTACCCCTGTGTGGAGTCTAACTGCCCCTGTGTGGACA					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502675), mRNA.					
Rattus norvegicus	RefSeq	GI_56090207-S	ILMN_266657	MRPL9	NM_001007696.1	NM_001007696.1		310653	56090207	NM_001007696.1	mrpl9	NP_001007697.1	ILMN_1350184	0001340181	S	1184	GGGCAGCGTGTCCATAGTCTTGAGCCGTGGAGGTCTGATACAAAGGAGGA	2	+	189421874-189421923	2q34	Rattus norvegicus mitochondrial ribosomal protein L9 (mrpl9), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC95263	MGC95263
Rattus norvegicus	RefSeq	GI_62654551-S	ILMN_62778	XCR1_PREDICTED	XM_236740.3	XM_236740.3		301086	109484140	XM_236740.3	Xcr1_predicted	XP_236740.2	ILMN_1367975	0005700110	S	963	TGGGGTCAAGTTCCGCAGACACCTAAAACGTCTCCTCCAGCAGGTCTGGC	8	-	128615979-128616028	8q32	PREDICTED: Rattus norvegicus chemokine (C motif) receptor 1 (predicted) (Xcr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645387-S	ILMN_56389	LOC499834	XM_580022.1	XM_580022.1		499834	62645387	XM_580022.1	LOC499834	XP_580022.1	ILMN_1358165	0006650110	S	692	GCCATAGTGAGGAGCCAGTGTGGGGTGGTTGGTGCCCAGAGCTGTAAACA					PREDICTED: Rattus norvegicus LOC499834 (LOC499834), mRNA.					
Rattus norvegicus	RefSeq	GI_62645759-S	ILMN_51432	PLA2G4B_PREDICTED	XM_230486.4	XM_230486.4		311341	109468685	XM_230486.4	Pla2g4b_predicted	XP_230486.4	ILMN_1371642	0005340242	S	2941	CGACTGACGCATTACAACATCTGCAACAACCAGGATCGGCTGCGGGAGGC	3	+	106548043-106548092	3q35	PREDICTED: Rattus norvegicus phospholipase A2, group IVB (cytosolic) (predicted) (Pla2g4b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650758-S	ILMN_269713	RPL10L_PREDICTED	XM_001080201.1	XM_001080201.1		299106	109479461	XM_001080201.1	Rpl10l_predicted	XP_001080201.1	ILMN_1354896	0001240458	S	399	TTCGGGAAACCACAAGGTACGGTGGCGAGAGTCCACATCGGCCAGGTCAT				6q24	PREDICTED: Rattus norvegicus ribosomal protein L10-like (predicted) (Rpl10l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649303-S	ILMN_273458	RGD1564957_PREDICTED	XM_001058167.1	XM_001058167.1		313413	109476818	XM_001058167.1	RGD1564957_predicted	XP_001058167.1	ILMN_1372051	0001990113	S	4227	GAGGTGGGGTGTGTAGCGTTTTCTGCTGAATCTCGTTTCCGTATCCGCTC				5q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110007P09 (predicted) (RGD1564957_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643983-S	ILMN_52442	LOC502548	XM_578034.1	XM_578034.1		502548	62643983	XM_578034.1	LOC502548	XP_578034.1	ILMN_1365763	0003060047	S	75	GGAACATTTACAGTGAATCTGGGGCAAGACTGCAGCCTGGTGGTAGCTGG					PREDICTED: Rattus norvegicus similar to TD and POZ domain containing protein 1 (MAPP family protein 2) (LOC502548), mRNA.					
Rattus norvegicus	RefSeq	GI_47576538-S	ILMN_297632	OLR875	NM_001000054.1	NM_001000054.1		288789	47576538	NM_001000054.1	Olr875	NP_001000054.1	ILMN_1368631	0006550148	S	761	CTGGGACTGTGGCTTATATGAGGCCTCAGGCAGATTCCTTTGGGGACACA	7	+	2314400-2314449	7q11	Rattus norvegicus olfactory receptor 875 (Olr875), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr875	Olr875
Rattus norvegicus	RefSeq	GI_47578038-S	ILMN_283132	OLR105	NM_001000146.1	NM_001000146.1		293244	47578038	NM_001000146.1	Olr105	NP_001000146.1	ILMN_1361176	0002680746	S	595	GGCTTTGGGCTCTTTGTCATGCTCTCTACATTGGGGATGGATGCTGTGCT	1	-	161230286-161230335	1q32	Rattus norvegicus olfactory receptor 105 (Olr105), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr105	Olr105
Rattus norvegicus	RefSeq	GI_62656537	ILMN_54829	RGD1562694_PREDICTED	XM_213396.4	XM_213396.4		287523	109488538	XM_213396.4	RGD1562694_predicted	XP_213396.4	ILMN_1649737	0004670605	S	854	TCTTCCCCAGCAAGCTCAGTCTACTTCCTTCGGTGGACGTGTGGGTGCAG	10	-	62487192-62487202:62488195-62488233	10q24	PREDICTED: Rattus norvegicus similar to Dph2l1 protein (predicted) (RGD1562694_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663759-I	ILMN_290664	LOC689842	XR_006738.1	XR_006738.1		689842	109505158	XR_006738.1	LOC689842		ILMN_1376215	0002120403	S	1915	GTCTCTTGATAGCCAAAAGGAAGGGGCAGGGAATAGGACTTTGCTTAGAG	17	+	72275287-72275336	17q12.1	PREDICTED: Rattus norvegicus similar to Nucleolar GTP-binding protein 1 (Chronic renal failure gene protein) (GTP-binding protein NGB) (LOC689842), mRNA.					
Rattus norvegicus	RefSeq	GI_62656107-S	ILMN_48806	MRPL22_PREDICTED	XM_213307.4	XM_213307.4		287302	109488088	XM_213307.4	Mrpl22_predicted	XP_213307.3	ILMN_1362859	0006220279	S	463	CCTGAAGCGCATCCGTTACCATGGCCGAGGTCGCTTTGGCATCATGGAGA	10	+	43809055-43809104	10q22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L22 (predicted) (Mrpl22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741468-S	ILMN_268341	COASY	NM_001006954.1	NM_001006954.1		287711	55741468	NM_001006954.1	Coasy	NP_001006955.1	ILMN_1358892	0003140138	S	1743	CTGGCCCTTGGAACTAACAAATCTAATGGTGAGGAGGAATGGGGGCCTCG	10	+	90103190-90103239	10q32.1	Rattus norvegicus Coenzyme A synthase (Coasy), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester [goid 15937] [evidence IEA]; The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester [goid 15937] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + dephospho-CoA = ADP + CoA [goid 4140] [evidence IEA]; Catalysis of the reaction: ATP + dephospho-CoA = ADP + CoA [goid 4140] [evidence ISS]; Catalysis of the reaction: ATP + pantetheine 4'-phosphate = diphosphate + dephospho-CoA [goid 4595] [evidence IEA]; Catalysis of the reaction: ATP + pantetheine 4'-phosphate = diphosphate + dephospho-CoA [goid 4595] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94749; Naglu	MGC94749; Naglu
Rattus norvegicus	RefSeq	GI_62664729-S	ILMN_296450	RGD1559751_PREDICTED	XM_001058285.1	XM_001058285.1		498895	109507632	XM_001058285.1	RGD1559751_predicted	XP_001058285.1	ILMN_1365451	0000510072	S	1698	TGGTGAGGAAACCCCATATCGAGGGATCACAGACTTGTGCCTGCACCATC					PREDICTED: Rattus norvegicus similar to n-chimaerin (predicted) (RGD1559751_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.128050	ILMN_161310	RN.128050	Rn.128050		Rn.128050		75517431	BC103733			ILMN_1530522	0005340300	S	2586	ATAGAGTAAACATTTCCAACAGGTCAAATAAATGACAGGGGAGGATTTAA					Rattus norvegicus cDNA clone					
Rattus norvegicus	RefSeq	GI_62652883-S	ILMN_275388	RGD1563164_PREDICTED	XM_001078275.1	XM_001078275.1		300126	109482611	XM_001078275.1	RGD1563164_predicted	XP_001078275.1	ILMN_1360983	0005290592	S	2264	GCACGGCCCTCTGCTGTTTATTCTGTTTCCTTCTGTTGGGGCCTTAGAGC				7q34	PREDICTED: Rattus norvegicus similar to B99 protein (predicted) (RGD1563164_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592084-S	ILMN_275792	SNRPN	NM_031117.1	NM_031117.1		81781	13592084	NM_031117.1	Snrpn	NP_112379.1	ILMN_1365045	0004200019	S	1351	TCCCTACAATGCTTCTTGTGAAATTGTGTCGCCTGCAAGCTTTTGACCCC	1	-	111570630-111570679	1q22	Rattus norvegicus small nuclear ribonucleoprotein polypeptide N (Snrpn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Ribonucleoprotein complex containing small nuclear RNA U1; a component of the major spliceosome complex [goid 5685] [evidence IDA]; Ribonucleoprotein complex containing small nuclear RNA U2; a component of the major spliceosome complex [goid 5686] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC105406; FE 294; FE 294 psi	MGC105406; FE 294; FE 294 psi
Rattus norvegicus	RefSeq	GI_62662531-S	ILMN_56883	LOC502067	XM_580236.1	XM_580236.1		502067	62662531	XM_580236.1	LOC502067	XP_580236.1	ILMN_1373674	0001770239	S	488	GCTGCCTAAATGTGGGGATAAGGGGATCCCCAAAGCTACTTGCCTGCAAG				16p14	PREDICTED: Rattus norvegicus LOC502067 (LOC502067), mRNA.					
Rattus norvegicus	RefSeq	GI_62657203-S	ILMN_48884	CYB561_PREDICTED	XM_221030.4	XM_221030.4		303601	109489182	XM_221030.4	Cyb561_predicted	XP_221030.4	ILMN_1372690	0002760017	S	2075	CCTCTGCCTGAGGCTACCTAACACCCTGAGATGGTGAGGTTTGTCTCCAG	10	-	95328694-95328743	10q32.1	PREDICTED: Rattus norvegicus cytochrome b-561 (predicted) (Cyb561_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654049-S	ILMN_60717	RGD1311381_PREDICTED	XM_217218.4	XM_217218.4		300870	109483735	XM_217218.4	RGD1311381_predicted	XP_217218.3	ILMN_1372451	0000430100	S	1493	GGCTAATGTCACTTGCTATTACCAGCCGGCCCCCTATGTCGCAGATGCTA	8	-	90503373-90503422	8q31	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20037 (predicted) (RGD1311381_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661481-S	ILMN_264012	RNF31_PREDICTED	XM_001059524.1	XM_001059524.1		364386	109502423	XM_001059524.1	Rnf31_predicted	XP_001059524.1	ILMN_1355292	0001230239	S	3296	CAGGCCCGGTTGTTACAGAAGCTGAGAGAAGAGGTGCCCTTGGGACAGAG				15p13	PREDICTED: Rattus norvegicus ring finger protein 31 (predicted), transcript variant 2 (Rnf31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652349-S	ILMN_64816	TM7SF4_PREDICTED	XM_235262.4	XM_235262.4		299889	109480719	XM_235262.4	Tm7sf4_predicted	XP_235262.2	ILMN_1355458	0003710400	S	1224	CTACCCCAAAGTGGAGAGGGAGAGAATTGAGTACCTCCATGCAAAGCTCC	7	+	75335409-75335458	7q22	PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 4 (predicted) (Tm7sf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12621133-A	ILMN_276179	MEGF6	NM_022955.1	NM_022955.1		65049	12621133	NM_022955.1	Megf6	NP_075244.1	ILMN_1376260	0006220538	S	4620	GTTCTGTGAGAAGGGGTGTGAGTCAGGCTCTTTTGGAGATGGCTGCCTGC				5q36	Rattus norvegicus multiple EGF-like-domains 6 (Megf6), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649927-S	ILMN_54628	LOC313658	XM_233595.3	XM_233595.3		313658	62649927	XM_233595.3	LOC313658	XP_233595.3	ILMN_1371898	0003060736	S	15905	GTGTGTGTGCTGCGCTGGCTATGACGTTGTCTGTCGCCCAGGCCATTGAA				5q36	PREDICTED: Rattus norvegicus similar to retinoblastoma-associated factor 600 (RBAF600) (LOC313658), mRNA.					
Rattus norvegicus	RefSeq	GI_11560122-S	ILMN_271121	TNMD	NM_022290.1	NM_022290.1		64104	11560122	NM_022290.1	Tnmd	NP_071626.1	ILMN_1352537	0000580026	S	1100	GGAGGTCGAGTCATCTGTCGTGTCATCATGCCTTGCAACTGGTGGGTGGC	X	+	121412004-121412053	Xq34	Rattus norvegicus tenomodulin (Tnmd), mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			ChM1L	ChM1L
Rattus norvegicus	RefSeq	GI_11024669-S	ILMN_55813	HAND1	NM_021592.2	NM_021592.2		59112	67514559	NM_021592.2	Hand1	NP_067603.1	ILMN_2040572	0005050747	S	777	TCCTGCCCTGGGGCCAAGCGAGAAGAGGATTAAAGGACGCACTGGCTGGC	10	-	43423612-43423661	10q22	Rattus norvegicus heart and neural crest derivatives expressed 1 (Hand1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]	MGC114332; eHand	MGC114332; eHand
Rattus norvegicus	RefSeq	GI_6981473-S	ILMN_270187	GFRA2	NM_012750.1	NM_012750.1		25136	6981473	NM_012750.1	Gfra2	NP_036882.1	ILMN_2039843	0006110541	S	2638	GTTGTCTATGATGGGAAGAAAGGTACCAGGACCCCTGAGCCCTGGTCCAG	15	+	51370898-51370947	15p11	Rattus norvegicus GDNF family receptor alpha 2 (Gfra2), mRNA.		The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 16167] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Retl2	Retl2
Rattus norvegicus	RefSeq	GI_9506492-S	ILMN_265614	GREM1	NM_019282.1	NM_019282.1		50566	9506492	NM_019282.1	Grem1	NP_062155.1	ILMN_1355468	0001190600	S	3620	TGCAGGCTATGACGGAACTACTACCTTGCTATGGATGAGGGTTGGGCAGG				3q34	Rattus norvegicus gremlin 1 homolog, cysteine knot superfamily (Xenopus laevis) (Grem1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Branching of the ureteric bud [goid 1658] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEP]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	drm; Cktsf1b1	drm; Cktsf1b1
Rattus norvegicus	RefSeq	GI_62718392-S	ILMN_57383	LOC501388	XM_576801.1	XM_576801.1		501388	62718392	XM_576801.1	LOC501388	XP_576801.1	ILMN_1365896	0005720086	S	4148	GGAGAACTCCCTGCAAAAACACAAGGCCTCATCAGTGACTTCCCTAAGTA					PREDICTED: Rattus norvegicus similar to novel protein (LOC501388), mRNA.					
Rattus norvegicus	RefSeq	GI_62650008-S	ILMN_272867	IIP45	NM_001017450.1	NM_001017450.1		298643	62945255	NM_001017450.1	Iip45	NP_001017450.1	ILMN_1355855	0002370563	S	1248	TGGAGCAGCACAGCGCCGGAATCTGTCAGCCACAAACCCATCCTATCAGG	5	-	164939513-164939514:164939785-164939832	5q36	Rattus norvegicus invasion inhibitory protein 45 (Iip45), mRNA.					
Rattus norvegicus	RefSeq	GI_62660892-S	ILMN_288002	RGD1560211_PREDICTED	XR_009562.1	XR_009562.1		364186	109500921	XR_009562.1	RGD1560211_predicted		ILMN_1372562	0000580324	S	166	GACGTCATGCTGGCAGCCAACGACTGCTTAATGATTCCGTACCAGATCAG				14q21	PREDICTED: Rattus norvegicus similar to prefoldin 4 (predicted) (RGD1560211_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577548-S	ILMN_289411	OLR670	NM_001000633.1	NM_001000633.1		404826	47577548	NM_001000633.1	Olr670	NP_001000633.1	ILMN_1356308	0005910025	S	674	GAACCCACAGTTCTGAAGGAAGACGGAAAGCTCTCTTTACCTGTGGGTCC	3	-	73204150-73204199	3q24	Rattus norvegicus olfactory receptor 670 (Olr670), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr670	Olr670
Rattus norvegicus	RefSeq	GI_61557214-S	ILMN_300024	HMGN1	NM_001013184.1	NM_001013184.1		360704	61557214	NM_001013184.1	Hmgn1	NP_001013202.1	ILMN_1350032	0003290551	S	945	CGGTTGTTATGAGAGGTCGTAAGGAAACTGGCCAAGTTTGAGGCTGGAGC	11	-	36429987-36430036	11q11	Rattus norvegicus high-mobility group nucleosome binding domain 1 (Hmgn1), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The repair of UV-induced T-T, C-T, and C-C dimers by the recognition and removal of the damaged DNA strand from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 720] [evidence IEA]; The repair of UV-induced T-T, C-T, and C-C dimers by the recognition and removal of the damaged DNA strand from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 720] [evidence ISS]; The preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the general nucleotide excision repair pathway [goid 6283] [evidence IEA]; The preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the general nucleotide excision repair pathway [goid 6283] [evidence ISS]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence IEA]; Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 290 nm [goid 10225] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 290 nm [goid 10225] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized during post-embryonic development. Morphogenesis pertains to the creation of form [goid 48597] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664240	ILMN_51857	RGD1563132_PREDICTED	XM_574128.2	XM_574128.2		498843	109506461	XM_574128.2	RGD1563132_predicted	XP_574128.2	ILMN_1651150	0000940086	S	2212	GCGACGCTGCACAAGACGAGAACGCGCTAACACTCTATCTGGTCATTGCC	18	+	30106818-30106867	18p11	PREDICTED: Rattus norvegicus similar to protocadherin beta 2 (predicted) (RGD1563132_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641089-S	ILMN_69054	LOC499234	XM_574527.1	XM_574527.1		499234	62641089	XM_574527.1	LOC499234	XP_574527.1	ILMN_1361875	0004480167	S	30	GCTGGCCCTCCAGTTGAGGCTTTTAAGTAATAAGGAGAGCCTTAGCCATC				1q33	PREDICTED: Rattus norvegicus similar to germ-cell specific leucine rich repeat NTPase (LOC499234), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639914-S	ILMN_69571	LOC502340	XM_577806.1	XM_577806.1		502340	62639914	XM_577806.1	LOC502340	XP_577806.1	ILMN_1364028	0003140022	S	621	AGGCACTCCACATGGCCTGAGAGGCTTGCGCTTGTCCTACCTTTCCAGGA					PREDICTED: Rattus norvegicus similar to NF-YB-like protein (LOC502340), mRNA.					
Rattus norvegicus	RefSeq	GI_62661078-S	ILMN_56784	LOC501950	XM_577377.1	XM_577377.1		501950	62661078	XM_577377.1	LOC501950	XP_577377.1	ILMN_1353646	0000130603	S	48	CGCACTATGAGAAGACTCATCAATCTGCTCCAGCAGTCCCGGGCCTAATG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (LOC501950), mRNA.					
Rattus norvegicus	RefSeq	GI_6981325-S	ILMN_287435	S100A4	NM_012618.1	NM_012618.1		24615	6981325	NM_012618.1	S100a4	NP_036750.1	ILMN_1365192	0003780056	S	173	GGAGCTGCCTAGCTTCCTGGGGAGAAGGACAGACGAAGCTGCATTCCAGA	2	+	182886408-182886428:182887088-182887116	2q34	Rattus norvegicus S100 calcium-binding protein A4 (S100a4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IMP]	RNP9KA; PEL98; MTS1; 18A2; CAPL; P9ka; 42A	RNP9KA; PEL98; MTS1; 18A2; CAPL; P9ka; 42A
Rattus norvegicus	RefSeq	Rn.1040	ILMN_280542	G0S2	NM_001009632.1	NM_001009632.1		289388	57526883	NM_001009632.1	G0s2	NP_001009632.1	ILMN_1530206	0004730014	S	729	CAGAATATAAAATGTTTTTATTTCAAAATGCAAAATGATATTCGTTGTAA				13q27	Rattus norvegicus G0/G1switch 2 (G0s2), mRNA.					
Rattus norvegicus	RefSeq	GI_57526883-S	ILMN_280542	G0S2	NM_001009632.1	NM_001009632.1		289388	57526883	NM_001009632.1	G0s2	NP_001009632.1	ILMN_1350091	0003870577	S	559	CATGCACTGTGATTTGTCCAAGGCTGTGGGAGCGATCAAGGAGCTGTCAC	13	-	109121417-109121466	13q27	Rattus norvegicus G0/G1switch 2 (G0s2), mRNA.					
Rattus norvegicus	RefSeq	GI_62652316-S	ILMN_63301	LOC500853	XM_576248.1	XM_576248.1		500853	62652316	XM_576248.1	LOC500853	XP_576248.1	ILMN_1352416	0002360270	S	3855	AGAGCCTCCATCGTCACCAGGCACCTCAGTGGTTTTAACTGGGACCTGCG				7q22	PREDICTED: Rattus norvegicus similar to DKFZP434I092 protein (LOC500853), mRNA.					
Rattus norvegicus	RefSeq	GI_62657240-S	ILMN_51462	LOC498015	XM_573213.2	XM_573213.2		498015	109489216	XM_573213.2	LOC498015	XP_573213.1	ILMN_1361989	0000460176	S	2066	CGAGGAAAGACTGCCTCTTCACTCAACTGTGTTCTTGGATCTCAGACTGC	10	-	96594793-96594842	10q32.1	PREDICTED: Rattus norvegicus similar to phosphatidylinositol transfer protein, cytoplasmic 1 isoform a (LOC498015), mRNA.					
Rattus norvegicus	RefSeq	GI_62654854-S	ILMN_55556	LOC503240	XM_578771.1	XM_578771.1		503240	62654854	XM_578771.1	LOC503240	XP_578771.1	ILMN_1350664	0000380400	S	1974	TTGTCACCGGGGTTAAACTGGGATGGCCTGGAGGACTCGGATTGCTGGCC					PREDICTED: Rattus norvegicus similar to putative RNA binding protein (LOC503240), mRNA.					
Rattus norvegicus	RefSeq	GI_62639402-S	ILMN_53368	LOC499131	XM_574423.1	XM_574423.1		499131	62639402	XM_574423.1	LOC499131	XP_574423.1	ILMN_1356731	0000580551	S	0	TGGTTCGCCAAGATGTCGTTTTCCAAGTATAAGCCTGCACCCCTGGCCAC				1q21	PREDICTED: Rattus norvegicus similar to NADH:ubiquinone oxidoreductase B15 subunit (LOC499131), mRNA.					
Rattus norvegicus	RefSeq	GI_62660644-S	ILMN_65265	RGD1565796_PREDICTED	XM_573633.2	XM_573633.2		498394	109499907	XM_573633.2	RGD1565796_predicted	XP_573633.2	ILMN_1354767	0001240600	S	546	AGTCCACCCCTCTGTACTTACCGTATACCCAGTGCTCCTATGAAGGCCGC	14	-	81479120-81479169	14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930005I04 gene (predicted) (RGD1565796_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667478-S	ILMN_64764	F9	XM_346365.3	XM_346365.3		24946	109511288	XM_346365.3	F9	XP_346366.3	ILMN_1369904	0000580053	S	1114	TCTGGTTATGTGAGTGGCTGGGGGAAAGTCTTCAACAAAGGGAGACAGGC	X	+	145574888-145574937	Xq36	PREDICTED: Rattus norvegicus coagulation factor IX (F9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IDA]; A pathway of blood coagulation in which the earlier stages of the cascade are bypassed and the activation of factor X to factor Xa is effected by the combination of factor VIIa + thromboplastin; this second pathway occurs when tissue extracts are present in optimal amounts and is much more rapid than the intrinsic pathway [goid 7598] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657236-S	ILMN_51175	RGD1565033_PREDICTED	XM_573212.2	XM_573212.2		498014	109489225	XM_573212.2	RGD1565033_predicted	XP_573212.2	ILMN_1354551	0006420450	S	523	GCACACGACTCAGACACTAGACCCCCGCAGGTCAAACAGATCACACCACT	10	+	96385436-96385485	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein LOC284018 isoform b (predicted) (RGD1565033_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575972-S	ILMN_298122	OLR150	NM_001000739.1	NM_001000739.1		405001	47575972	NM_001000739.1	Olr150	NP_001000739.1	ILMN_2040215	0004490349	S	648	CTCCTACACTCTCATTTTACATGCCGTTTTTCGCCTCCCGTCTCGGGATG	1	-	162032504-162032553	1q32	Rattus norvegicus olfactory receptor 150 (Olr150), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Olr150	Olr150
Rattus norvegicus	RefSeq	GI_62645520-S	ILMN_267624	LOC499856	NM_001025042.1	NM_001025042.1		499856	68163514	NM_001025042.1	LOC499856	NP_001020213.1	ILMN_1349500	0000060671	S	1808	CCAAAAGGGACCAGTGCAAGGGAGAGAGGAGTTAGGATTGAGGCCAGTTG	3	-	95878122-95878171	3q33	Rattus norvegicus hypothetical protein LOC499856 (LOC499856), mRNA.					
Rattus norvegicus	RefSeq	GI_62639266-S	ILMN_69231	LOC502307	XM_577771.1	XM_577771.1		502307	62639266	XM_577771.1	LOC502307	XP_577771.1	ILMN_1350791	0000770112	S	410	GGCTGCCACCAACTGCACAGCTTCCGTGGTTGACCCAACTCTGGTGATGA					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC20781 (LOC502307), mRNA.					
Rattus norvegicus	RefSeq	GI_40254778-S	ILMN_269976	EFNB1	NM_017089.2	NM_017089.2		25186	40254778	NM_017089.2	Efnb1	NP_058785.2	ILMN_1375038	0000540546	S	3058	AGGTGGGAGAGGGAGCAAAACAGCCAGCCCCTTCCAGGTGGCAGTCGGAA	X	+	87175781-87175830	Xq31	Rattus norvegicus ephrin B1 (Efnb1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence TAS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence IEA]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin [goid 48013] [evidence TAS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with an ephrin receptor [goid 46875] [evidence TAS]; Interacting selectively with an ephrin receptor [goid 46875] [evidence IEA]; Interacting selectively with an ephrin receptor [goid 46875] [evidence ISS]; Interacting selectively with an ephrin receptor [goid 46875] [evidence IEA]	LERK2	LERK2
Rattus norvegicus	RefSeq	GI_54262156-S	ILMN_301994	CYCS	NM_012839.2	NM_012839.2		25309	54262156	NM_012839.2	Cycs	NP_036971.1	ILMN_1371982	0004850487	S	759	ACAAGAAGACTCACCCGTGCTTCAGTGTGTGTAAACTGGCCTCTGACAGG	4	-	78826270-78826319	4q24	Rattus norvegicus cytochrome c, somatic (Cycs), nuclear gene encoding mitochondrial protein, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence TAS]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IC ]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV [goid 6123] [evidence IDA]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence TAS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence ISS]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 42743] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence TAS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Enables the directed movement of electrons from the CoQH2-cytochrome c reductase complex and the cytochrome c oxidase complex [goid 45155] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93634; CYCSA	MGC93634; CYCSA
Rattus norvegicus	RefSeq	GI_31343606-S	ILMN_272783	RABGGTB	NM_138708.2	NM_138708.2		25533	31343606	NM_138708.2	Rabggtb	NP_619715.1	ILMN_1371603	0005890711	S	997	CTAGTGAGCTAGTCCGAGGGGAAGAGCCTTCGGTGTGCAGTATCAGTTAC	2	-	251852823-251852872	2q45	Rattus norvegicus Rab geranylgeranyltransferase, beta subunit (Rabggtb), mRNA.		The covalent attachment of a geranylgeranyl moiety to a protein amino acid [goid 18348] [evidence IDA]	Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor) [goid 4659] [evidence IEA]; Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family [goid 4663] [evidence IDA]; Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family [goid 4663] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661938	ILMN_69624	LOC502004	XM_577431.1	XM_577431.1		502004	62661938	XM_577431.1	LOC502004	XP_577431.1	ILMN_1649745	0004540647	S	15	GTCTCTGGGCACTCTGCTCTTTGGAATGCCAACACCTGCATCTAGGAATG				15p12	PREDICTED: Rattus norvegicus similar to Natural killer cell protease 1 precursor (RNKP-1) (Granzyme B) (LOC502004), mRNA.					
Rattus norvegicus	RefSeq	GI_16758151-S	ILMN_265617	CXCR3	NM_053415.1	NM_053415.1		84475	16758151	NM_053415.1	Cxcr3	NP_445867.1	ILMN_1355853	0003190128	S	1395	ACCACTCTCAGCTCCAAGGACAGCAGCACCTTTACTGAGCCATGCCCTGC	X	-	89794494-89794543	Xq31	Rattus norvegicus chemokine (C-X-C motif) receptor 3 (Cxcr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence NAS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with chemokines, small chemoattractant molecules normally used to stimulate leukocytes, to initiate a change in cell activity [goid 4950] [evidence IDA]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IPI]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IEA]	Gpr9	Gpr9
Rattus norvegicus	RefSeq	GI_62638971-S	ILMN_272921	RGD1561718_PREDICTED	XR_007860.1	XR_007860.1		502284	109460931	XR_007860.1	RGD1561718_predicted		ILMN_1359450	0005910161	S	1128	GGCACTGAAGAACTTCTCTTCCAACCACTCATTGGAATGGCTAACAGTGT				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (predicted) (RGD1561718_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648093-S	ILMN_51922	FBXL14_PREDICTED	XM_232330.4	XM_232330.4		312675	109472555	XM_232330.4	Fbxl14_predicted	XP_232330.4	ILMN_1356736	0005080288	S	961	GGCCTGGAGCAGCTCACTCTACAGGACTGCCAGAAACTCACGGATCTTTC	4	+	155825592-155825641	4q42	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 14 (predicted) (Fbxl14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506522-I	ILMN_277099	CSPG5	NM_019284.1	NM_019284.1		50568	9506522	NM_019284.1	Cspg5	NP_062157.1	ILMN_1375522	0006220204	I	1814	CCGAGCAGGGTTGCGTACATTGGATGGTTCTCGTCTGTGCTCTTTGTACG	8	+	114635153-114635202	8q32	Rattus norvegicus chondroitin sulfate proteoglycan 5 (Cspg5), transcript variant 1, mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence IEA]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence ISS]	The regrowth of axons following their loss or damage [goid 31103] [evidence IEP]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ngc; Caleb	Ngc; Caleb
Rattus norvegicus	RefSeq	GI_8393211-S	ILMN_273788	CTF1	NM_017129.1	NM_017129.1		29201	8393211	NM_017129.1	Ctf1	NP_058825.1	ILMN_1367250	0003120193	S	1127	CTTTACTAACCAGAAAAGTGCCTACTTGTCCCCTGGTGGCAAGACCACCC	1	+	187006384-187006433	1q36	Rattus norvegicus cardiotrophin 1 (Ctf1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The series of molecular signals generated as a consequence of a leukemia inhibitory factor receptor binding to one of its physiological ligands [goid 48861] [evidence IMP]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IMP]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the leukemia inhibitory factor receptor [goid 5146] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62641631-S	ILMN_50255	BRSK2	XM_219498.4	XM_219498.4		293631	109459629	XM_219498.4	Brsk2	XP_219498.4	ILMN_1351281	0002640139	S	1655	GTGCTTCGAAATATCCTGAGCATTGCTGGTCTCCAGGTCCAGGCATGGGC	1	+	202127274-202127323	1q41	PREDICTED: Rattus norvegicus brain serine/threonine kinase 2 (Brsk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence ISS]; A cell cycle checkpoint that blocks cell cycle progression from G2 to M phase in response to DNA damage [goid 31572] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648538-S	ILMN_286187	ARFGEF1_PREDICTED	XM_001066125.1	XM_001066125.1		312915	109476046	XM_001066125.1	Arfgef1_predicted	XP_001066125.1	ILMN_1349720	0005290452	S	6930	CAAGCATTCCATGTTGACGGTGGGGTAAAGAGGTTCCAGGTGGATGTGTA				5q11	PREDICTED: Rattus norvegicus ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) (predicted) (Arfgef1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741858-S	ILMN_282355	XRCC4	NM_001006999.1	NM_001006999.1		309995	55741858	NM_001006999.1	Xrcc4	NP_001007000.1	ILMN_1353934	0002360040	S	942	GCTGCAAAGATGTCCTTAGAAACCCTGAGAAACAGCAGCCCAGAAGACCT	2	-	19904937-19904986	2q12	Rattus norvegicus X-ray repair complementing defective repair in Chinese hamster cells 4 (Xrcc4), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A large protein complex which is involved in the repair of DNA double-strand breaks and V(D)J recombination events. In mammals, it consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer, Ku, the nuclear phosphoprotein XRCC4 and DNA ligase IV [goid 5958] [evidence ISS]; A large protein complex which is involved in the repair of DNA double-strand breaks and V(D)J recombination events. In mammals, it consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer, Ku, the nuclear phosphoprotein XRCC4 and DNA ligase IV [goid 5958] [evidence ISS]; A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif1p [goid 32807] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a pro-B cell. Pro-B cells are the earliest stage of the B cell lineage and undergo heavy chain D and J gene rearrangements, although they are not fully committed [goid 2328] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a pro-B cell. Pro-B cells are the earliest stage of the B cell lineage and undergo heavy chain D and J gene rearrangements, although they are not fully committed [goid 2328] [evidence ISS]; The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase [goid 6266] [evidence ISS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence IEA]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence ISS]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz) [goid 10165] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence ISS]; The process by which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). For immunoglobulin light chains the same process is used to join V and J gene segments directly [goid 33152] [evidence IEA]; The process by which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). For immunoglobulin light chains the same process is used to join V and J gene segments directly [goid 33152] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence ISS]; The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, as occurs during DNA repair [goid 51103] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate [goid 51351] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence ISS]	MGC95022	MGC95022
Rattus norvegicus	RefSeq	GI_62647741-S	ILMN_267977	RGD1563580_PREDICTED	XM_001070331.1	XM_001070331.1		500244	109473793	XM_001070331.1	RGD1563580_predicted	XP_001070331.1	ILMN_1367422	0004050537	S	692	GGCAGAAGGTGGATTCGCTCTCGTCTTTCTGGTGAGAACAAGCAATGGGG				4q34	PREDICTED: Rattus norvegicus similar to AP2 associated kinase 1 (predicted) (RGD1563580_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9945323-S	ILMN_279814	ADAM7	NM_020301.1	NM_020301.1		29641	9945323	NM_020301.1	Adam7	NP_064697.1	ILMN_1361457	0001500576	S	3216	AGCACCAGCACTGTCACAAAGCATCTCATCCATTGCCCAGGGTGTAGAGG	15	-	48184449-48184498	15p11	Rattus norvegicus ADAM metallopeptidase domain 7 (Adam7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	EAPI	EAPI
Rattus norvegicus	RefSeq	GI_52138594-S	ILMN_285517	F3	NM_013057.2	NM_013057.2		25584	52138594	NM_013057.2	F3	NP_037189.2	ILMN_1356793	0002850368	S	1250	GCCAGTGGTCAGATGCCTTTCCTATAACCTGGGTGGGCTTTTGGAGAACC	2	+	218382126-218382175	2q41	Rattus norvegicus coagulation factor III (thromboplastin, tissue factor) (F3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; A pathway of blood coagulation in which the earlier stages of the cascade are bypassed and the activation of factor X to factor Xa is effected by the combination of factor VIIa + thromboplastin; this second pathway occurs when tissue extracts are present in optimal amounts and is much more rapid than the intrinsic pathway [goid 7598] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]		MGC93621	MGC93621
Rattus norvegicus	RefSeq	GI_16758567-S	ILMN_286194	PITPNB	NM_053742.1	NM_053742.1		114561	16758567	NM_053742.1	Pitpnb	NP_446194.1	ILMN_1349429	0006180347	S	2386	GTGGTTATTCCCTGGGCACTGCTGGAAGCTGGGAAGGTCACCACCAGAAG	12	-	45386275-45386324	12q16	Rattus norvegicus phosphatidylinositol transfer protein, beta (Pitpnb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of phosphatidylinositol into, out of, within or between cells. Phosphatidylinositol refers to any glycophospholipids with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 8526] [evidence IMP]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666758-S	ILMN_47777	LOC501548	XM_576950.1	XM_576950.1		501548	62666758	XM_576950.1	LOC501548	XP_576950.1	ILMN_1356548	0007000563	S	880	TCCCATGCGTGCTATCGGACCACCAGGGCCTAAAACTGGTCTTCAATAAC					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC501548), mRNA.					
Rattus norvegicus	RefSeq	GI_47577910-S	ILMN_295476	OLR1147	NM_001000431.1	NM_001000431.1		300408	47577910	NM_001000431.1	Olr1147	NP_001000431.1	ILMN_1366052	0003440193	S	796	GTTTCCCCTCGGATAACGACAGTGTCATATATGATGTACACAGTGCTCCC	8	-	17687937-17687986	8q13	Rattus norvegicus olfactory receptor 1147 (Olr1147), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1147	Olr1147
Rattus norvegicus	RefSeq	GI_62658442-S	ILMN_50380	NPTX2_PREDICTED	XM_221901.3	XM_221901.3		288475	62658442	XM_221901.3	Nptx2_predicted	XP_221901.3	ILMN_1368246	0003060338	S	2950	GCCTGGGTCCCTTGTGTGTGTAGCACATCCCTGCTTTTGACTGAACACAG				12p11	PREDICTED: Rattus norvegicus neuronal pentraxin II (predicted) (Nptx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665105-S	ILMN_287695	ABCE1	XM_001070484.1	XM_001070484.1		361390	109508603	XM_001070484.1	Abce1	XP_001070484.1	ILMN_1368255	0003610100	S	3222	TGTTTCTAGACTACAGCAGCCAAGGACACCCTTAACCCCTGCGGGGAGCC				19q11	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family E (OABP), member 1 (Abce1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62643007-S	ILMN_49759	RGD1306592_PREDICTED	XM_345164.3	XM_345164.3		365691	109464460	XM_345164.3	RGD1306592_predicted	XP_345165.2	ILMN_1356722	0005360605	S	3457	CCCTGAGTGGCCTTCTCTGCTAAAGCCCTGTGGACCAAACCCAATGGACT	2	-	56493321-56493370	2q16	PREDICTED: Rattus norvegicus similar to Agrin (predicted) (RGD1306592_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_37693509-S	ILMN_295686	BST2	NM_198134.1	NM_198134.1		378947	37693509	NM_198134.1	Bst2	NP_937767.1	ILMN_1367652	0003780022	S	644	GCATCTCCTGCTTTGAACTGGGGAGGGGGGAGGGAGTTCTGCTTTACTGC				16p14	Rattus norvegicus bone marrow stromal cell antigen 2 (Bst2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]	Damp1; DAMP-1	Damp1; DAMP-1
Rattus norvegicus	RefSeq	GI_62639063-S	ILMN_264999	NPAS1_PREDICTED	XM_001074492.1	XM_001074492.1		308387	109461303	XM_001074492.1	Npas1_predicted	XP_001074492.1	ILMN_1364551	0006350039	S	1943	GGCCCACAGGTACTAGGGTGCAGCGAAAGGGAGACTGAAAACAGTGTAAC				1q21	PREDICTED: Rattus norvegicus neuronal PAS domain protein 1 (predicted) (Npas1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650091-S	ILMN_267525	LOC313749	XM_001078991.1	XM_001078991.1		313749	109475886	XM_001078991.1	LOC313749	XP_001078991.1	ILMN_1358301	0005690129	S	4041	TGCCAACAAGCGGATCACCTACACCAACCCCTACCCTTCTCGGAGGACCT	5	+	169796290-169796339	5q36	PREDICTED: Rattus norvegicus similar to mKIAA0673 protein (LOC313749), mRNA.					
Rattus norvegicus	Unigene	Rn.19440	ILMN_160816	RN.19440	Rn.19440		Rn.19440		52631145	AY724532			ILMN_1530367	0006900088	S	3458	TCTTTATACATTGTTGGACTGTGTGGCATAAACCTTGTTTCATTTAATAA					Rattus norvegicus clone UI-R-FJ0-cqa-n-24-0-UI unknown					
Rattus norvegicus	RefSeq	GI_62653497-S	ILMN_297762	EI24	NM_001025660.1	NM_001025660.1		300514	71043693	NM_001025660.1	Ei24	NP_001020831.1	ILMN_1352635	0002100520	S	1689	GGGGGAAAGGAGCCTAAGAGATGGGACAGATAGACCTCAGCCAAACTGGT	8	-	38028398-38028447	8q21	Rattus norvegicus etoposide induced 2.4 mRNA (Ei24), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]		MGC112713	MGC112713
Rattus norvegicus	RefSeq	GI_16758269-S	ILMN_273315	FBXO2	NM_053511.1	NM_053511.1		85273	16758269	NM_053511.1	Fbxo2	NP_445963.1	ILMN_1367396	0002570400	S	1114	GTTGCTTTTACTGTGGGATCGGCTTCCATTTGCATCCCATGGGCAGTCGC	5	+	165244330-165244379	5q36	Rattus norvegicus F-box protein 2 (Fbxo2), mRNA.	Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 6516] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of unfolded or misfolded proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation [goid 30433] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of unfolded or misfolded proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation [goid 30433] [evidence ISS]; Any process that modulates the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31396] [evidence ISS]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any carbohydrate [goid 30246] [evidence IEA]; Interacting selectively with any carbohydrate [goid 30246] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654671-S	ILMN_69433	LOC501098	XM_576513.2	XM_576513.2		501098	109485755	XM_576513.2	LOC501098	XP_576513.2	ILMN_1368987	0004560020	S	1528	GGTGGGCAGGACAGCTCATCACACCTTCCTGGTTATCCTGTTACTTCCTC	9	-	8836542-8836591	9q12	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 49 (predicted) (LOC501098), mRNA.					
Rattus norvegicus	RefSeq	GI_47577492-S	ILMN_273957	OLR484	NM_001000306.1	NM_001000306.1		295750	47577492	NM_001000306.1	Olr484	NP_001000306.1	ILMN_2039636	0007510309	S	719	CCTGTGCTTCACATATGATGGCTGTCACAGTTTTCTATGGGACACTGCTG	3	-	69379116-69379165	3q24	Rattus norvegicus olfactory receptor 484 (Olr484), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr484	Olr484
Rattus norvegicus	RefSeq	Rn.1717	ILMN_271885	FUT8	NM_001002289.1	NM_001002289.1		432392	50511337	NM_001002289.1	Fut8	NP_001002289.1	ILMN_1530331	0004230136	S	1233	TGCTTTGTTAAAGGAGGCAAAGACAAAGTACTCCAATTATGAATTTATTA	6	+	99987223-99987249:99999122-99999144	6q24	Rattus norvegicus fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (Fut8), mRNA.		The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43112] [evidence IEA]; The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43112] [evidence ISS]	Catalysis of the reaction: GDP-L-fucose + N4-{N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,3)-[N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,6)]-beta-D-mannosyl-(1,4)-N-acetyl-beta-D-glucosaminyl-(1,4)-N-acetyl-beta-D-glucosaminyl}asparagine = GDP + N4-{N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,3)-[N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,6)]-beta-D-mannosyl-(1,4)-N-acetyl-beta-D-glucosaminyl-(1,4)-[alpha-L-fucosyl-(1,6)]-N-acetyl-beta-D-glucosaminyl}asparagine [goid 8424] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha(1,6)-linkage [goid 46921] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_50511337-A	ILMN_271885	FUT8	NM_001002289.1	NM_001002289.1		432392	50511337	NM_001002289.1	Fut8	NP_001002289.1	ILMN_1376836	0006940471	S	1498	GGAGGCCAAAATGCCCACAACCAGATTGCCGTTTATCCTCACAAACCTCG	6	+	100010603-100010652	6q24	Rattus norvegicus fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (Fut8), mRNA.		The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43112] [evidence IEA]; The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43112] [evidence ISS]	Catalysis of the reaction: GDP-L-fucose + N4-{N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,3)-[N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,6)]-beta-D-mannosyl-(1,4)-N-acetyl-beta-D-glucosaminyl-(1,4)-N-acetyl-beta-D-glucosaminyl}asparagine = GDP + N4-{N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,3)-[N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,6)]-beta-D-mannosyl-(1,4)-N-acetyl-beta-D-glucosaminyl-(1,4)-[alpha-L-fucosyl-(1,6)]-N-acetyl-beta-D-glucosaminyl}asparagine [goid 8424] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha(1,6)-linkage [goid 46921] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661840-S	ILMN_64038	SLITRK5_PREDICTED	XM_224485.4	XM_224485.4		306152	109501829	XM_224485.4	Slitrk5_predicted	XP_224485.3	ILMN_1353040	0002100110	S	4671	GATGGGCTGTACAAGTCTCTGTATGATGTCTTTATCCCTCTGGGCAGACG	15	+	96411602-96411651	15q23	PREDICTED: Rattus norvegicus SLIT and NTRK-like family, member 5 (predicted) (Slitrk5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651320-S	ILMN_57766	LOC500729	XM_580116.1	XM_580116.1		500729	62651320	XM_580116.1	LOC500729	XP_580116.1	ILMN_1369328	0001400333	S	0	CTTGGAAATGTAAGCCTGTGTTGGGAGATGAGACCACTGCCCGGAGCTGG				6q32	PREDICTED: Rattus norvegicus LOC500729 (LOC500729), mRNA.					
Rattus norvegicus	RefSeq	GI_62660896-S	ILMN_61101	LOC305492	XM_223579.2	XM_223579.2		305492	62660896	XM_223579.2	LOC305492	XP_223579.2	ILMN_1374483	0003060292	S	377	GGAGGCAATAGAACACTGTAAGAACGCTGCAGACCTGCTGATGAGGCCCC				14q21	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (LOC305492), mRNA.					
Rattus norvegicus	RefSeq	GI_62658970-S	ILMN_58693	RGD1562310_PREDICTED	XM_573404.2	XM_573404.2		498188	109496034	XM_573404.2	RGD1562310_predicted	XP_573404.1	ILMN_1369512	0006420072	S	629	GGCCAAATGCAGGACCTCATCCCAGAGTGTGCAGCATGAGAACACGTACC	12	-	39443196-39443221:39444766-39444789	12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21415 (predicted) (RGD1562310_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644436-S	ILMN_52956	LOC365944	XM_345291.2	XM_345291.2		365944	62644436	XM_345291.2	LOC365944	XP_345292.2	ILMN_1356095	0006840519	S	849	CCTCACCTTAGTTTGGTCATTAGGCCTGGCTGCTGGGAATGGCCTACAGC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM) (Laminin receptor homolog) (LOC365944), mRNA.					
Rattus norvegicus	RefSeq	GI_62653733-A	ILMN_269070	RPP25	NM_001012124.1	NM_001012124.1		315705	58865817	NM_001012124.1	Rpp25	NP_001012124.1	ILMN_1376507	0000610707	S	1043	TTTAGGGAAGCCTGGTGGGTAGTGGGACTCTTGAGCTTTCTTGGGGACCC	8	+	61249782-61249831	8q24	Rattus norvegicus ribonuclease P 25 subunit (human) (Rpp25), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor [goid 4526] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664237	ILMN_274342	LOC679898	XM_001054881.1	XM_001054881.1		679898	109506457	XM_001054881.1	LOC679898	XP_001054881.1	ILMN_1650168	0002630017	S	2090	ACTATCTGCACTTGGGCGGGCACTTGACTCTGCTTGCCTCTCCAGTGTTG	18	+	29497834-29497883	18p11	PREDICTED: Rattus norvegicus similar to zinc finger, matrin type 2 (LOC679898), mRNA.					
Rattus norvegicus	RefSeq	GI_62665959-S	ILMN_270270	PALD	XM_001055668.1	XM_001055668.1		294508	109510093	XM_001055668.1	Pald	XP_001055668.1	ILMN_1355743	0004280546	S	2569	TTCCCTGAGCTGGAGAGCATGGAGGACCAGCCCCTGTCAAGACTCCGTTA				20q11	PREDICTED: Rattus norvegicus paladin (Pald), mRNA.					
Rattus norvegicus	RefSeq	GI_62638758-S	ILMN_65216	RGD1560808_PREDICTED	XM_577734.2	XM_577734.2		502273	109457883	XM_577734.2	RGD1560808_predicted	XP_577734.2	ILMN_1370923	0006180735	S	28	CCAACCCCTACACCCGAGCCCAGTATCTCTGAGGAGGGCAACTTCCATTA	1	-	52580529-52580578	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1560808_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51592081-S	ILMN_263201	KCNJ16	NM_053314.2	NM_053314.2		29719	51592081	NM_053314.2	Kcnj16	NP_445766.2	ILMN_1370340	0006370035	S	1305	CCTCCTCTCTGACCCTTACCTGAAGGCCCTGAGCTGCAAGCACGATTTCT	10	+	100515484-100515533	10q32.1	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 16 (Kcnj16), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	 [goid 5242] [evidence IEA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir5.1	Kir5.1
Rattus norvegicus	RefSeq	GI_62644123-S	ILMN_60329	PTPN8_PREDICTED	XM_215658.3	XM_215658.3		295338	62644123	XM_215658.3	Ptpn8_predicted	XP_215658.3	ILMN_1360871	0004480050	S	2430	CACAAGGAGCAAGTCCAGACACAGTGAGGAAGACGACACATGCAGCCCAC				2q34	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 8 (predicted) (Ptpn8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638244-S	ILMN_273248	HECA_PREDICTED	XM_001072147.1	XM_001072147.1		308624	109460481	XM_001072147.1	Heca_predicted	XP_001072147.1	ILMN_1350409	0006200497	S	1318	TGTCAGGCCCGTCTGAACTGCAAGCATTGTGGCAAGCCCGTGATCGACGT				1p12	PREDICTED: Rattus norvegicus headcase homolog (Drosophila) (predicted) (Heca_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254738-S	ILMN_268873	UGT1A6	NM_001039691.1	NM_001039691.1		113992	89276777	NM_001039691.1	Ugt1a6	NP_001034780.1	ILMN_1360780	0001090095	S	903	ACCCCCGGCCAGTCATGCCCAACATGATCTTCATTGGAGGGACCAACTGC	9	+	87041727-87041776	9q35	Rattus norvegicus UDP glucuronosyltransferase 1 family, polypeptide A6 (Ugt1a6), transcript variant 1, mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving glucuronate, any salt or ester of glucuronic acid, the uronic acid formally derived from glucose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group [goid 19585] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence ISS]	Ugt1; Ugt1a7; Udpgt; MGC124929	Ugt1; Ugt1a7; Udpgt; MGC124929
Rattus norvegicus	RefSeq	GI_8392871-S	ILMN_265484	AP1B1	NM_017277.1	NM_017277.1		29663	8392871	NM_017277.1	Ap1b1	NP_058973.1	ILMN_1368063	0000450022	S	3414	GAGCCCGATCTAGGATTCTGTTCCCTTAGGCCCTGGAGGATGGTCACTGC	14	+	85695242-85695291	14q21	Rattus norvegicus adaptor-related protein complex 1, beta 1 subunit (Ap1b1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	Adtb1	Adtb1
Rattus norvegicus	RefSeq	GI_34013517-S	ILMN_278737	H2-OA	NM_183051.1	NM_183051.1		24984	34013517	NM_183051.1	H2-Oa	NP_898874.1	ILMN_1350913	0004280050	S	444	GCGCAACAGCCAGCCCATCACTAAGGGAGTGACCCAGACCAGCTTCTACT	20	-	4890761-4890810	20p12	Rattus norvegicus histocompatibility 2, O region alpha locus (H2-Oa), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62645539-S	ILMN_275350	LOC687625	XM_001074289.1	XM_001074289.1		687625	109470399	XM_001074289.1	LOC687625	XP_001074289.1	ILMN_1362165	0001090040	S	3230	TCACTGAGGGATTAGAGCGAGTCCTCCTCGTCCGGGGTGGTGGCAGTGAA					PREDICTED: Rattus norvegicus similar to Solute carrier family 12 member 6 (Electroneutral potassium-chloride cotransporter 3) (K-Cl cotransporter 3), transcript variant 1 (LOC687625), mRNA.					
Rattus norvegicus	RefSeq	GI_34863041-S	ILMN_55288	LOC500969	XM_576377.1	XM_576377.1		500969	62653484	XM_576377.1	LOC500969	XP_576377.1	ILMN_1371740	0006020438	S	826	CTCAGCTATCAAAAACAACGGCTTTATGAAATTCGTAGGCAAATGGTTGG					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC500969), mRNA.					
Rattus norvegicus	RefSeq	GI_62079138-S	ILMN_263275	RGD1309534	NM_001014206.1	NM_001014206.1		363016	62079138	NM_001014206.1	RGD1309534	NP_001014228.1	ILMN_1373502	0003520167	S	2037	GCAGGATGGTGGAGGGAAGGTTGGGAATCCAGAGACCTGTTTGTTACTCT	8	-	12085289-12085338	8q12	Rattus norvegicus similar to RIKEN cDNA 4931406C07 (RGD1309534), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663309-S	ILMN_287364	OGN_PREDICTED	XM_001054725.1	XM_001054725.1		291015	109505529	XM_001054725.1	Ogn_predicted	XP_001054725.1	ILMN_1352014	0006760019	S	2509	GTTCGCAGGCCTCATTTTCTCTGACTGAATGCTCACCAAGAGCACTGAAC				17p14	PREDICTED: Rattus norvegicus osteoglycin (predicted), transcript variant 3 (Ogn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664278-S	ILMN_54666	DIAP1_PREDICTED	XM_226014.4	XM_226014.4		307483	109506514	XM_226014.4	Diap1_predicted	XP_226014.4	ILMN_1365846	0005340066	S	3588	GGAAAAGGCGGAAAAAGAGCGACTGGAGAAGCAGCAGAAGCGAGAGCAGC	18	-	30765872-30765921	18p11	PREDICTED: Rattus norvegicus diaphanous homolog 1 (Drosophila) (predicted) (Diap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647489-S	ILMN_69160	KBTBD2_PREDICTED	XM_231798.4	XM_231798.4		312372	109472094	XM_231798.4	Kbtbd2_predicted	XP_231798.4	ILMN_1351568	0002230193	S	2241	TGTCACCTACCAGTATGATTTGGAACTTGACCGGTGGTCTCTGCGGCAGC	4	-	85734825-85734874	4q24	PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain containing 2 (predicted) (Kbtbd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507106-S	ILMN_296255	SLC12A4	NM_019229.1	NM_019229.1		29501	9507106	NM_019229.1	Slc12a4	NP_062102.1	ILMN_1361301	0003610020	S	3423	CCACGGGACCTGGAGGATTTAGGGACTTTCCCCTCCCATACTCCAAGGGA	19	-	35785432-35785481	19q12	Rattus norvegicus solute carrier family 12 (potassium/chloride transporters), member 4 (Slc12a4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kcc1	Kcc1
Rattus norvegicus	RefSeq	GI_62651633-S	ILMN_294858	BAZ2A_PREDICTED	XM_001070233.1	XM_001070233.1		304601	109481420	XM_001070233.1	Baz2a_predicted	XP_001070233.1	ILMN_1356681	0000520546	S	8035	GGGGACACAAAGGGCAGGGGGAGGGCTGTCTTTTTATTTTTAACCTGCTT				7q11	PREDICTED: Rattus norvegicus bromodomain adjacent to zinc finger domain, 2A (predicted) (Baz2a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641182	ILMN_266100	RGD1563508_PREDICTED	XM_001078729.1	XM_001078729.1		499250	109462743	XM_001078729.1	RGD1563508_predicted	XP_001078729.1	ILMN_1650706	0001050750	S	14970	GCAGCCATGTAGAGAAAACTTGAGAATTGGGGCTCACTGGGAAGTTCTAG					PREDICTED: Rattus norvegicus similar to PI-3-kinase-related kinase SMG-1 isoform 2 (predicted) (RGD1563508_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641184-S	ILMN_266100	RGD1563508_PREDICTED	XM_001078729.1	XM_001078729.1		499250	109462743	XM_001078729.1	RGD1563508_predicted	XP_001078729.1	ILMN_1356316	0003850176	S	7171	TCCATGTGATGAAGGCAGTGTTGGAGGAGTTAATGGAGGCCACACCCCCA					PREDICTED: Rattus norvegicus similar to PI-3-kinase-related kinase SMG-1 isoform 2 (predicted) (RGD1563508_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647089-S	ILMN_272331	RGD1306142_PREDICTED	XM_001070028.1	XM_001070028.1		312257	109473375	XM_001070028.1	RGD1306142_predicted	XP_001070028.1	ILMN_1361727	0005570139	S	2986	GCGCAGGCAAGATGCCAAAGGTCTGTTTGAAGTCCGAGCCCAGGAGTACC				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B930096L08 (predicted) (RGD1306142_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640775-S	ILMN_277863	UNC45A	NM_001037647.1	NM_001037647.1		308759	83320083	NM_001037647.1	Unc45a	NP_001032736.1	ILMN_1357071	0006420402	S	2763	ACCGGGGCACTGTCGTGGTGCTGAACATGATGGAGTCCTCGAAGGAGATC	1	-	136144379-136144428	1q31	Rattus norvegicus unc-45 homolog A (C. elegans) (Unc45a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1305357; MGC125248	RGD1305357; MGC125248
Rattus norvegicus	RefSeq	GI_62079008-S	ILMN_275017	TMEM192	NM_001014141.1	NM_001014141.1		361137	62079008	NM_001014141.1	Tmem192	NP_001014163.1	ILMN_1364059	0004780541	S	792	ACCTGAAGCGACACAATGCCCTGCTGAGTAAGCGGTTGTTGGAGCTGGCG	16	-	26481198-26481247	16p13	Rattus norvegicus transmembrane protein 192 (Tmem192), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	Rn.5808-S	ILMN_275017	TMEM192	NM_001014141.1	NM_001014141.1		361137	62079008	NM_001014141.1	Tmem192	NP_001014163.1	ILMN_1530379	0004280221	S	669	AGCCTGATGTACTTGAAGAAGAAAAATGTTATGCTTACCCCAGCAATATT	16	-	26481321-26481370	16p13	Rattus norvegicus transmembrane protein 192 (Tmem192), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_40254791-S	ILMN_262469	POU1F1	NM_013008.2	NM_013008.2		25517	40254791	NM_013008.2	Pou1f1	NP_037140.2	ILMN_1356790	0000380022	S	2089	GCTGCACTAGGGCGAGGCTACGTGGCTTACTTGCTGTTATGTTTCCAGTG	11	+	2980278-2980327	11p12	Rattus norvegicus POU class 1 homeobox 1 (Pou1f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence IEA]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence IEA]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence IMP]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IEA]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate [goid 32962] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate [goid 32962] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that modulates the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43567] [evidence IEA]; Any process that modulates the frequency, rate or extent of insulin-like growth factor receptor signaling [goid 43567] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The directed movement of substances into, out of, or within the nucleus [goid 51169] [evidence IMP]; The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a somatotropin secreting cell. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60126] [evidence ISS]; The process whose specific outcome is the progression of a somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60133] [evidence IEA]; The process whose specific outcome is the progression of a somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60133] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Pit1; GHF1; PIT1Z; GHF1A	Pit1; GHF1; PIT1Z; GHF1A
Rattus norvegicus	RefSeq	GI_62648236-S	ILMN_276181	RGD1564211_PREDICTED	XM_001069819.1	XM_001069819.1		500340	109474349	XM_001069819.1	RGD1564211_predicted	XP_001069819.1	ILMN_1368669	0005910168	S	1526	CCGCCAATGACAAGGCTGTGTTGCAAGTGCCAGAGTTAGTGGTGCCTGAC				4q42	PREDICTED: Rattus norvegicus similar to NOK kinase (predicted) (RGD1564211_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649810	ILMN_48793	LOC500562	XM_575928.1	XM_575928.1		500562	62649810	XM_575928.1	LOC500562	XP_575928.1	ILMN_1650083	0002570008	S	530	ACGGCCAGGAGGGGAGCGCCACTCGACTGCCACTGAGATCCCATTGCCAA				5q36	PREDICTED: Rattus norvegicus similar to lin-28 homolog (LOC500562), mRNA.					
Rattus norvegicus	RefSeq	GI_62658530-S	ILMN_264489	RGD1560731_PREDICTED	XM_001065344.1	XM_001065344.1		498153	109496547	XM_001065344.1	RGD1560731_predicted	XP_001065344.1	ILMN_1368702	0002370551	S	902	TGCACACAGTTTGGCCTCTGGACACCTTACTACCTGAGCCTGGGGCACAC				12q11	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 146 (predicted) (RGD1560731_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641804-S	ILMN_282598	RGD1311475_PREDICTED	XM_001072042.1	XM_001072042.1		293698	109463440	XM_001072042.1	RGD1311475_predicted	XP_001072042.1	ILMN_1367116	0005910167	S	4416	TTCCCTCAGCCAGTGATACTGTGGGGACAGAAGGCACAGGAGTGCAGCCT				1q43	PREDICTED: Rattus norvegicus similar to FLJ00354 protein (predicted) (RGD1311475_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655492-S	ILMN_269733	FLK	XM_001072523.1	XM_001072523.1		301737	109487561	XM_001072523.1	Flk	XP_001072523.1	ILMN_1374403	0004850632	S	2946	CCGTCGGCCCTCCTCAGTTGGTGCTATAAACAGCCTTGGTAGCCCATGTT				9q37	PREDICTED: Rattus norvegicus tyrosine protein kinase FLK, transcript variant 3 (Flk), mRNA.					
Rattus norvegicus	RefSeq	GI_62664088-S	ILMN_268848	LOC679010	XM_001054208.1	XM_001054208.1		679010	109506987	XM_001054208.1	LOC679010	XP_001054208.1	ILMN_1375225	0003710435	S	2879	TAAGTGGAGTTACGGGCACCGCTGGAATAGGTGGGGTTGGAGGCATAGGC					PREDICTED: Rattus norvegicus similar to Desmoglein-1 alpha precursor (Dsg1-alpha) (Desmoglein-1) (Desmosomal glycoprotein I) (DG1) (DGI) (LOC679010), mRNA.					
Rattus norvegicus	RefSeq	GI_62665109-S	ILMN_298193	MMAA_PREDICTED	XM_001074396.1	XM_001074396.1		291939	109508727	XM_001074396.1	Mmaa_predicted	XP_001074396.1	ILMN_1364617	0005550072	S	1223	GAGGTTCTCAGTGGAGCCCTCTCCCCAGGACGAGCAGCAGACTTATTGTT				19q11	PREDICTED: Rattus norvegicus methylmalonic aciduria (cobalamin deficiency) cblA type (predicted) (Mmaa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667297-S	ILMN_54857	LOC503467	XM_579021.1	XM_579021.1		503467	62667297	XM_579021.1	LOC503467	XP_579021.1	ILMN_1366517	0006380600	S	826	CCCTTGCTATCTGTCACCTGAGAAAGCCACCCACTAGGGAAACTGCCACC					PREDICTED: Rattus norvegicus similar to PSARL protein (LOC503467), mRNA.					
Rattus norvegicus	RefSeq	GI_12083606-S	ILMN_288122	RPS14	NM_022672.1	NM_022672.1		29284	12083606	NM_022672.1	Rps14	NP_073163.1	ILMN_1371508	0003120095	S	439	ATCCCCTCTGACAGCACTCGAAGGAAGGGTGGTCGTCGGGGTCGCCGTCT	18	+	56732378-56732427	18q12.1	Rattus norvegicus ribosomal protein S14 (Rps14), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule [goid 30490] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34866899-S	ILMN_269268	RGD1306763_PREDICTED	XM_001075890.1	XM_001075890.1		315112	109482535	XM_001075890.1	RGD1306763_predicted	XP_001075890.1	ILMN_1356594	0006200537	S	2059	CATGGAGAACAGCAGCAGGTGGCTTGATGACCACTCCTCAGCTCCAGGGC				7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23322 (predicted) (RGD1306763_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643364-S	ILMN_294671	RGD1564378_PREDICTED	XR_008656.1	XR_008656.1		499599	109466535	XR_008656.1	RGD1564378_predicted		ILMN_1362116	0005360735	S	104	AGACCCGTATGTTACCTGCCTTCCAGCAGCCTAAGACCCCATGGCTTCAG				2q25	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (predicted) (RGD1564378_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650320-S	ILMN_53751	RGD1562291_PREDICTED	XM_237502.3	XM_237502.3		301676	109477915	XM_237502.3	RGD1562291_predicted	XP_237502.3	ILMN_1374090	0004570433	S	747	GTCATGTCAAGAGATCGATGAGGAGCTCAAAGAAGCAGCCGGGTCGCTGC	6	+	12276736-12276785	6q12	PREDICTED: Rattus norvegicus similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2) (predicted) (RGD1562291_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650871	ILMN_58675	LOC503029	XM_578549.1	XM_578549.1		503029	62650871	XM_578549.1	LOC503029	XP_578549.1	ILMN_1650622	0002470358	S	1136	CCAGGATAGTGGCAGGAACTAAGGGTCGGCTAGAGTGTGGGGAGACATAC				6q24	PREDICTED: Rattus norvegicus similar to ATPase inhibitory factor 1 (LOC503029), mRNA.					
Rattus norvegicus	RefSeq	GI_62642280-S	ILMN_56927	LOC365446	XM_345018.2	XM_345018.2		365446	62642280	XM_345018.2	LOC365446	XP_345019.2	ILMN_1354349	0002690121	S	625	TGCTGCAGAATGAGATGCAGCTGGTGGTGAAGACACGCCGCCTCAAGGGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931412G03 (LOC365446), mRNA.					
Rattus norvegicus	RefSeq	GI_47777737-S	ILMN_291865	OLR1517	NM_001001351.1	NM_001001351.1		287516	47777737	NM_001001351.1	Olr1517	NP_001001351.1	ILMN_1354039	0000630280	S	445	GCCTCATCCTGGGCTTGTGCCTTCAGCAATGCACTGACTCACACTGTAGC	10	-	61571795-61571844	10q24	Rattus norvegicus olfactory receptor 1517 (Olr1517), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1517	Olr1517
Rattus norvegicus	RefSeq	GI_62651565-S	ILMN_281692	SP8_PREDICTED	XM_001053894.1	XM_001053894.1		299499	109480069	XM_001053894.1	Sp8_predicted	XP_001053894.1	ILMN_1371968	0001580195	S	1011	AGGACAGCACCTCATGGACGGTTTCAAGCCCGTATTGCCCGGCTCGTACC				6q33	PREDICTED: Rattus norvegicus trans-acting transcription factor 8 (predicted) (Sp8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24475747-S	ILMN_299023	DUSP1	NM_053769.2	NM_053769.2		114856	24475747	NM_053769.2	Dusp1	NP_446221.1	ILMN_1367486	0006220435	S	1723	AGACCCAGAGCAGGCTTTCAGCACTGATGGACGAAGCCAGTGTTGGTTTG	10	+	16945506-16945555	10q12	Rattus norvegicus dual specificity phosphatase 1 (Dusp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence TAS]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]	MKP-1; Ptpn16; CL100; Mkp1; 3CH134	MKP-1; Ptpn16; CL100; Mkp1; 3CH134
Rattus norvegicus	RefSeq	GI_62650865-S	ILMN_58401	LOC503026	XM_578546.1	XM_578546.1		503026	62650865	XM_578546.1	LOC503026	XP_578546.1	ILMN_1373078	0003850300	S	184	CTGCCAGCACTAAGATTGGCCCTTGCCAGACCCCGGTGAAGAGCTGCATT					PREDICTED: Rattus norvegicus similar to ribosomal protein S8 (LOC503026), mRNA.					
Rattus norvegicus	RefSeq	GI_62650220-S	ILMN_48548	LOC366524	XM_345621.2	XM_345621.2		366524	62650220	XM_345621.2	LOC366524	XP_345622.2	ILMN_1374067	0000050372	S	282	TCCAATGGCAGCATGAGAGACAAGGACAGTGGACCAGAGGCAGAGAGGCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110007C24 (LOC366524), mRNA.					
Rattus norvegicus	RefSeq	GI_47575968-S	ILMN_290228	OLR1507	NM_001000033.1	NM_001000033.1		287508	47575968	NM_001000033.1	Olr1507	NP_001000033.1	ILMN_1353163	0005390441	S	884	AAGAGGTCAAGGGTGCCCTAAAAAGGGGTTTCAGATGGAGGGCAGCAGCC	10	-	61306730-61306779	10q24	Rattus norvegicus olfactory receptor 1507 (Olr1507), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1507	Olr1507
Rattus norvegicus	RefSeq	GI_6978780-S	ILMN_275738	DRD5	NM_012768.1	NM_012768.1		25195	6978780	NM_012768.1	Drd5	NP_036900.1	ILMN_1368161	0002030170	S	1320	AGACGGTGACCTGGCTGCTGAGTCTGTCTGGGAGCTTGACTGTGAGGAAG	14	-	77768118-77768167	14q21	Rattus norvegicus dopamine receptor D5 (Drd5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence ISS]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IEA]	The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IMP]; The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence ISS]; The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport [goid 1992] [evidence IEA]; A process that results in a decrease in the diameter of an artery during the norepinephrine-epinephrine response to decreased blood pressure [goid 1994] [evidence ISS]; A process that results in a decrease in the diameter of an artery during the norepinephrine-epinephrine response to decreased blood pressure [goid 1994] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IMP]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence IMP]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IDA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IMP]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence ISS]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IMP]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IMP]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30819] [evidence IMP]; Any process that stops or reduces the activity of the enzyme NAD(P)H oxidase [goid 33861] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; Any process that modulates the frequency, rate or extent of the willingness or readiness of a female to receive male advances [goid 45924] [evidence ISS]; Any process that modulates the frequency, rate or extent of the willingness or readiness of a female to receive male advances [goid 45924] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]	A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D5 receptors [goid 1589] [evidence ISS]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D5 receptors [goid 1589] [evidence IEA]; A G-protein coupled receptor that binds dopamine and has the pharmacological characteristics of classic D5 receptors [goid 1589] [evidence IMP]; Interacting selectively with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide [goid 1965] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence IDA]; Combining with the neurotransmitter dopamine to initiate a change in cell activity [goid 4952] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_54262186-S	ILMN_302992	UTS2D	NM_198133.2	NM_198133.2		378939	54262186	NM_198133.2	Uts2d	NP_937766.1	ILMN_1367966	0006620014	S	583	GCCTGCGCCCGCCTGCTTCTGGCTTGCTGTATGCTTGTATGGTGAACAGT	11	+	75424896-75424944	11q22	Rattus norvegicus urotensin 2 domain containing (Uts2d), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IDA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	U2B; Urp	U2B; Urp
Rattus norvegicus	RefSeq	GI_62649871-S	ILMN_51818	EPHB2_PREDICTED	XM_233574.4	XM_233574.4		313633	109475683	XM_233574.4	Ephb2_predicted	XP_233574.4	ILMN_1351610	0002570132	S	4612	GGCCCCTTCAGGTTCCTGGGTGCTCTCCGATGGCCAAAACCCAATTTCAC	5	-	155421682-155421731	5q36	PREDICTED: Rattus norvegicus Eph receptor B2 (predicted) (Ephb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577276-S	ILMN_272352	OLR3	NM_001000110.1	NM_001000110.1		292559	47577276	NM_001000110.1	Olr3	NP_001000110.1	ILMN_1354306	0003290019	S	786	CACAACAGGGGTCATCCACTTGCGCCCCAAGGCCAGCTACTCTCCTGAGA	1	+	65743892-65743941	1q12	Rattus norvegicus olfactory receptor 3 (Olr3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr3	Olr3
Rattus norvegicus	RefSeq	GI_62662732-S	ILMN_55966	LOC502084	XM_577521.1	XM_577521.1		502084	62662732	XM_577521.1	LOC502084	XP_577521.1	ILMN_1351269	0002190519	S	1335	TTCCTCTTGGCTGTTTGGAATGCCGATGGGGTTGGTAGCAGCGGCCTGTG				16q11	PREDICTED: Rattus norvegicus similar to cDNA sequence BC016198 (LOC502084), mRNA.					
Rattus norvegicus	RefSeq	GI_62654296-S	ILMN_50113	LOC503226	XM_578752.1	XM_578752.1		503226	62654296	XM_578752.1	LOC503226	XP_578752.1	ILMN_1364297	0004560341	S	537	TCTGGCAGAGAGGAGCCTCAAGGGATTCTGTGGAAGGCAGACATCTCAGA					PREDICTED: Rattus norvegicus similar to Microtubule-actin crosslinking factor 1 (Actin cross-linking family 7) (LOC503226), mRNA.					
Rattus norvegicus	RefSeq	GI_62658800-S	ILMN_48036	LOC360800	XM_341070.2	XM_341070.2		360800	62658800	XM_341070.2	LOC360800	XP_341071.2	ILMN_1358222	0005050672	S	681	GATTTGAAGGCAGGCTGAAGGAGGATCTGTGAGCGGCCAGACAGAGACGG				12q13	PREDICTED: Rattus norvegicus similar to Sulfatase modifying factor 2 precursor (C-alpha-formyglycine-generating enzyme 2) (LOC360800), mRNA.					
Rattus norvegicus	RefSeq	GI_62664458-S	ILMN_52403	LOC502164	XM_577621.1	XM_577621.1		502164	62664458	XM_577621.1	LOC502164	XP_577621.1	ILMN_1370133	0001190131	S	350	GGTGTTGGACCTGGTTTTTGTGAGAGCAAGGCCTACAGGCTCACTTGTCA				18q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC502164), mRNA.					
Rattus norvegicus	RefSeq	GI_47576122-S	ILMN_288921	OLR1387	NM_001000001.1	NM_001000001.1		287241	47576122	NM_001000001.1	Olr1387	NP_001000001.1	ILMN_1350679	0006350082	S	774	CTTACAACCCAAGGACAGCTATTCTGAGAGCAAGGGGAAGTTTGTTGCCC	10	+	34741175-34741224	10q21	Rattus norvegicus olfactory receptor 1387 (Olr1387), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1387	Olr1387
Rattus norvegicus	RefSeq	GI_25742753-A	ILMN_296355	MAT1A	NM_012860.2	NM_012860.2		25331	77157804	NM_012860.2	Mat1a	NP_036992.2	ILMN_1376554	0004730722	S	1803	GGTCAGTGTCCCCTGAACATCTGCATTCTGTGAGGGACTGAGCTGTGTGT	16	+	17563133-17563182	16p14	Rattus norvegicus methionine adenosyltransferase I, alpha (Mat1a), mRNA.		The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 6556] [evidence IDA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine [goid 4478] [evidence IDA]; Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine [goid 4478] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IPI]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]	MGC108563; SAS; AdoMet; SADE	MGC108563; SAS; AdoMet; SADE
Rattus norvegicus	RefSeq	GI_11995463-S	ILMN_48154	XYLT2	NM_022296.2	NM_022296.2		64134	77736607	NM_022296.2	Xylt2	NP_071632.2	ILMN_2039286	0005890605	S	3201	ATCAGGCCCTGCTGAGATCCATGAAGTTTCCCCACTGGAGGAGGGAGCCC	10	-	83297916-83297965	10q31	Rattus norvegicus xylosyltransferase II (Xylt2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxyl group of an acceptor protein substrate [goid 30158] [evidence IEA]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]	xylt-II; MGC124608	xylt-II; MGC124608
Rattus norvegicus	RefSeq	GI_55741830-S	ILMN_291225	TINF2	NM_001006962.1	NM_001006962.1		290232	55741830	NM_001006962.1	Tinf2	NP_001006963.1	ILMN_1369440	0001580050	S	1181	GGAGACCCCGCCTGACTCACCGGCTACAAAGCAAAAGGAGAACTGTGTGA	15	-	33830177-33830188:33830273-33830310	15p13	Rattus norvegicus TERF1 (TRF1)-interacting nuclear factor 2 (Tinf2), mRNA.	The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence IEA]; Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with telomere-associated DNA, usually characterized by highly repetitive sequences [goid 42162] [evidence ISS]; Interacting selectively with telomere-associated DNA, usually characterized by highly repetitive sequences [goid 42162] [evidence ISS]	MGC94711	MGC94711
Rattus norvegicus	RefSeq	GI_62642239-S	ILMN_55075	RGD1560656_PREDICTED	XM_574664.2	XM_574664.2		361753	109460098	XM_574664.2	RGD1560656_predicted	XP_574664.2	ILMN_1349187	0003360292	S	1078	GACTGGAAGCAGAGGAAGCTGAAGAAGAGCAACGTGGTGTCCCTAAAGGC	1	-	243125480-243125529	1q53	PREDICTED: Rattus norvegicus similar to AD24 (predicted) (RGD1560656_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639699-S	ILMN_274054	PRRG2_PREDICTED	XM_001080673.1	XM_001080673.1		361570	109461905	XM_001080673.1	Prrg2_predicted	XP_001080673.1	ILMN_1355738	0002970450	S	560	TCGTGTTGGCTGGCTTGGGAGCCTTTTGGTATCTGCATTATCGACGGCGC				1q22	PREDICTED: Rattus norvegicus proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 (predicted) (Prrg2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646196-S	ILMN_49922	LOC502685	XM_578182.1	XM_578182.1		502685	62646196	XM_578182.1	LOC502685	XP_578182.1	ILMN_1371478	0004810114	S	547	CCACAGACTATGCTGGTGCTCGAAGCCACCTTGTGCTGGACAGAAAGCTG					PREDICTED: Rattus norvegicus similar to interferon regulatory factor 10 (LOC502685), mRNA.					
Rattus norvegicus	RefSeq	GI_62666860-S	ILMN_284506	RGD1560439_PREDICTED	XM_001055437.1	XM_001055437.1		302703	109511793	XM_001055437.1	RGD1560439_predicted	XP_001055437.1	ILMN_1373361	0000770685	S	2168	ATAGGCTGTGTGCTACCCTGGGCATGGAGTGGCCTTCGGTGTGCAGTGTT				Xq21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ34960 (predicted) (RGD1560439_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32140189-S	ILMN_49080	RSB66	NM_181694.2	NM_181694.2		296610	70912396	NM_181694.2	Rsb66	NP_859045.2	ILMN_1372649	0000630048	S	324	CAGCACTTTGAGGCCTTGCACTCCGGCACCCCTGTCACCAACAGCCTTCT	3	-	7679440-7679489	3p12	Rattus norvegicus Rsb-66 protein (Rsb66), mRNA.				MGC114240	MGC114240
Rattus norvegicus	RefSeq	GI_62663134-S	ILMN_262731	RGD1561537_PREDICTED	XM_001058999.1	XM_001058999.1		361197	109505336	XM_001058999.1	RGD1561537_predicted	XP_001058999.1	ILMN_1364382	0003190184	S	4969	GCATACCAGCAAGCACTCTGGACAACTGAGCTACATCTCCTGCCCCAGAT				17p14	PREDICTED: Rattus norvegicus similar to putative repair and recombination helicase RAD26L (predicted) (RGD1561537_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659800-S	ILMN_293025	RGD1560022_PREDICTED	XM_001061158.1	XM_001061158.1		305012	109499145	XM_001061158.1	RGD1560022_predicted	XP_001061158.1	ILMN_1367965	0005720341	S	5666	GAGACTCTTACCTTGCGGCTGTGAGAAAGGGGAGGGTGACGTGGGATTAC				13q26	PREDICTED: Rattus norvegicus similar to Hypothetical protein 4832420M10 (predicted) (RGD1560022_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40538875-S	ILMN_47967	PCSK9	NM_199253.2	NM_199253.2		298296	77020249	NM_199253.2	Pcsk9	NP_954862.2	ILMN_1370891	0002190278	S	2156	CGAATCCGTGATGCTGGTAGAGCGGACAGGACCAGTGAAGAAGCCACGGT	5	-	127502603-127502652	5q34	Rattus norvegicus proprotein convertase subtilisin/kexin type 9 (Pcsk9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IDA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IEP]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence IDA]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence IDA]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence IEP]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The chemical reactions and pathways involving low-density lipoprotein receptors [goid 32799] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors [goid 32803] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors [goid 32803] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IDA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]	NARC-1; Narc1	NARC-1; Narc1
Rattus norvegicus	RefSeq	GI_62078586-S	ILMN_276286	ATP6V1H	NM_001013929.1	NM_001013929.1		297797	62078586	NM_001013929.1	Atp6v1h	NP_001013951.1	ILMN_1367423	0001570131	S	1412	TGGTGCACAACTGGGAGTATCTTGGTAAACAGCTCCAGTCGGAGCAGCCC	5	-	14578342-14578379:14598748-14598759	5q12	Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), mRNA.	The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane [goid 221] [evidence IEA]; Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	SFDbeta; CGI-11; VMA13; SFDalpha; SFD	SFDbeta; CGI-11; VMA13; SFDalpha; SFD
Rattus norvegicus	RefSeq	GI_62648926-S	ILMN_278296	EXOSC3_PREDICTED	XM_001071395.1	XM_001071395.1		313243	109476426	XM_001071395.1	Exosc3_predicted	XP_001071395.1	ILMN_1366640	0005050333	S	834	CAGACTGGCAGAGAGCTGACGTGTCCATTTCCTCAGTGGATTTGTTAGCC				5q22	PREDICTED: Rattus norvegicus exosome component 3 (predicted) (Exosc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58000412-A	ILMN_276940	SPETEX-2H	NM_001009969.1	NM_001009969.1		361008	58000412	NM_001009969.1	Spetex-2H	NP_001009969.1	ILMN_1376419	0004760156	S	505	AGAATGGGAAAGAGGTTCTGTGAGGAGGCCAGCAAGACCATCTACACCGC	15	+	5186824-5186873	15p16	Rattus norvegicus Spetex-2H protein (Spetex-2H), mRNA.				Spergen-2H	Spergen-2H
Rattus norvegicus	RefSeq	GI_62642267	ILMN_297786	OPALIN	NM_001017386.1	NM_001017386.1		361757	62821824	NM_001017386.1	Opalin	NP_001017386.1	ILMN_1650340	0006860465	S	1582	AGATCTGCCTGAATGTGGGCAGCATCATTCCATAGCCTGCAGTTCTGGAC	1	-	246235708-246235757	1q54	Rattus norvegicus oligodendrocytic myelin paranodal and inner loop protein (Opalin), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_31542564-S	ILMN_269796	DNASE1	NM_013097.2	NM_013097.2		25633	31542564	NM_013097.2	Dnase1	NP_037229.1	ILMN_1372077	0004120037	S	1194	TACTGCGGCATTCCAACACCTCGGCACAGGGAATGTCTACCACGCGGACT	10	-	11762617-11762666	10q12	Rattus norvegicus deoxyribonuclease I (Dnase1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one [goid 6308] [evidence IEA]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of DNA to 5'-phosphodinucleotide and 5'-phosphooligonucleotide end products [goid 4530] [evidence IDA]; Catalysis of the endonucleolytic cleavage of DNA to 5'-phosphodinucleotide and 5'-phosphooligonucleotide end products [goid 4530] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC108543	MGC108543
Rattus norvegicus	RefSeq	GI_62650385-S	ILMN_274112	SLC4A1AP_PREDICTED	XM_001067937.1	XM_001067937.1		298805	109479044	XM_001067937.1	Slc4a1ap_predicted	XP_001067937.1	ILMN_1359532	0000540609	S	2349	TGGGCCACAGGATGTCTGGGAGAAGGCATCAAGTCTGACCCGGGAAGTTC				6q13	PREDICTED: Rattus norvegicus solute carrier family 4 (anion exchanger), member 1, adaptor protein (predicted) (Slc4a1ap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638956-S	ILMN_263575	RGD1565487_PREDICTED	XM_001073994.1	XM_001073994.1		292625	109461286	XM_001073994.1	RGD1565487_predicted	XP_001073994.1	ILMN_1368510	0005360524	S	480	ACGGGAAGCGATCATGTGCTGGTTCTCCATGAGGGTGATTCGCAAGAGAC				1q21	PREDICTED: Rattus norvegicus RGD1565487 (predicted) (RGD1565487_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578064-S	ILMN_283458	OLR1012	NM_001000071.1	NM_001000071.1		288861	47578064	NM_001000071.1	Olr1012	NP_001000071.1	ILMN_1367542	0006980600	S	771	TGCTAACCCTTCTGCCAAGGAGAGAGCATCACTGACCAAAGGAGTAGCTA	7	+	6762323-6762372	7q11	Rattus norvegicus olfactory receptor 1012 (Olr1012), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1012	Olr1012
Rattus norvegicus	RefSeq	GI_62660045-S	ILMN_278700	BRDT	XM_001057811.1	XM_001057811.1		305123	109500213	XM_001057811.1	Brdt	XP_001057811.1	ILMN_1369986	0000520446	S	2878	GTGAAGGCTCGGACACAGGAGCAGATTCGCAAACACCTGGAACACAGCGC				14p22	PREDICTED: Rattus norvegicus bromodomain, testis-specific (Brdt), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence IEA]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]	Interacting selectively with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity [goid 42393] [evidence IEA]; Interacting selectively with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity [goid 42393] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_57527208-S	ILMN_289231	UBA5	NM_001009669.1	NM_001009669.1		300968	57527208	NM_001009669.1	Uba5	NP_001009669.1	ILMN_1363481	0004010315	S	1320	GGCCAGGATGAAGAAGATGTAGACAGTGGGCTGGCACCTGCCGTGTTTCC	8	-	109109655-109109683:109109684-109109704	8q32	Rattus norvegicus ubiquitin-like modifier activating enzyme 5 (Uba5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate [goid 48037] [evidence IEA]	MGC105565	MGC105565
Rattus norvegicus	RefSeq	GI_62651260-S	ILMN_270809	RGD1563395_PREDICTED	XM_001071553.1	XM_001071553.1		299334	109479941	XM_001071553.1	RGD1563395_predicted	XP_001071553.1	ILMN_1350876	0000520112	S	1098	TGGTTTAGCAGTTGAGAGCACTTGTGAACTTCTGGTTTCCCCTGGCAGCC				6q32	PREDICTED: Rattus norvegicus similar to cyclin-dependent kinase 2-interacting protein (predicted) (RGD1563395_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576094	ILMN_264459	OLR1405	NM_001001012.1	NM_001001012.1		405386	47576094	NM_001001012.1	Olr1405	NP_001001012.1	ILMN_1651076	0005700736	S	586	GACCTGATGGTCTTCACTGTGGGTGGAGTGATATTCCTGACACCGTTTTC	10	+	36555411-36555460	10q22	Rattus norvegicus olfactory receptor 1405 (Olr1405), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1405	Olr1405
Rattus norvegicus	RefSeq	GI_34852886-S	ILMN_67556	LOC293944	XM_219865.2	XM_219865.2		293944	34852886	XM_219865.2	LOC293944	XP_219865.2	ILMN_1355037	0003610324	S	245	TGTGGAAAATGTGGTGAATCGTCTCGTGTCATCTCTGCAGGGCGGGGACC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC293944), mRNA.					
Rattus norvegicus	RefSeq	GI_31377520-S	ILMN_271630	S1PR5	NM_021775.2	NM_021775.2		60399	31377520	NM_021775.2	S1pr5	NP_068543.2	ILMN_1356145	0005270725	S	1967	GGTGAAGTCTGAATAGAGTGCGCTAAGGGCTGGCAGAAGGAGTGGCTGGC	8	-	20278558-20278607	8q13	Rattus norvegicus sphingosine-1-phosphate receptor 5 (S1pr5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IEP]	Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]	Edg-8	Edg-8
Rattus norvegicus	RefSeq	GI_62543504-S	ILMN_284099	TCEA3	NM_001015008.1	NM_001015008.1		298559	62543504	NM_001015008.1	Tcea3	NP_001015008.1	ILMN_1361779	0002650047	S	1140	CTGCCAGGAGAGGAAGACGGAGCAGGAAGCACAGACCCCATGACCTGGAA	5	+	155019238-155019287	5q36	Rattus norvegicus transcription elongation factor A (SII), 3 (Tcea3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase [goid 6354] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase [goid 6354] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108819	MGC108819
Rattus norvegicus	RefSeq	GI_62663614-S	ILMN_285931	RGD1559149_PREDICTED	XM_001059941.1	XM_001059941.1		306978	109505924	XM_001059941.1	RGD1559149_predicted	XP_001059941.1	ILMN_1351172	0002570176	S	374	GCGCTGAGAAGAAAGCTGCTGGCAAAAGGGACGTCCCACCTAAGAGAGTG				17q11	PREDICTED: Rattus norvegicus sim to 60S ribosomal protein L7a (predicted) (RGD1559149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741543-S	ILMN_275959	LOC308954	NM_001024777.1	NM_001024777.1		308954	67078539	NM_001024777.1	LOC308954	NP_001019948.1	ILMN_1357145	0001570301	S	1676	GTATCCAAGTCTCAGCCCAGACCAGCAAACACATCAGAGTCAGGTTTCCT	1	-	179489906-179489955	1q35	Rattus norvegicus similar to hypothetical protein MGC50721 (LOC308954), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	LRRGT00105	LRRGT00105
Rattus norvegicus	RefSeq	GI_62641220-S	ILMN_275959	LOC308954	NM_001024777.1	NM_001024777.1		308954	67078539	NM_001024777.1	LOC308954	NP_001019948.1	ILMN_1358471	0006940300	S	754	CCATCTCTGATGCCTTTTGGCTGGAGGATTTTGCACAGGACAAGGAGGGC	1	-	179490828-179490877	1q35	Rattus norvegicus similar to hypothetical protein MGC50721 (LOC308954), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	LRRGT00105	LRRGT00105
Rattus norvegicus	RefSeq	GI_62665291-S	ILMN_262738	RGD1305243_PREDICTED	XM_001075875.1	XM_001075875.1		361409	109508787	XM_001075875.1	RGD1305243_predicted	XP_001075875.1	ILMN_1362748	0002850592	S	3133	GTGGTTATGCTCAGGAAGGTAACAGTGGCTAGAGATCTGTGGGAGGCAGG				19q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ34389 (predicted) (RGD1305243_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641620	ILMN_49672	PNPLA2_PREDICTED	XM_341960.3	XM_341960.3		361676	109459600	XM_341960.3	Pnpla2_predicted	XP_341961.1	ILMN_1650724	0003290725	S	1930	GGCCGTCCTCACTTCTGCATGTCACTCTTGCCTCTGACTTGGGCAGCAGA	1	+	201646737-201646786	1q41	PREDICTED: Rattus norvegicus patatin-like phospholipase domain containing 2 (predicted) (Pnpla2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667545-S	ILMN_271055	ARD1_PREDICTED	XM_001057202.1	XM_001057202.1		363518	109462337	XM_001057202.1	Ard1_predicted	XP_001057202.1	ILMN_1367544	0005050156	S	675	CGTGAGGAGAAGGGCCTGACTGCTGAGGATAGTGGTGGGGACAGCAAGGA				Xq37	PREDICTED: Rattus norvegicus N-acetyltransferase ARD1 homolog (S. cerevisiae) (predicted) (Ard1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639278-A	ILMN_273801	ACTN4	NM_031675.2	NM_031675.2		63836	77539777	NM_031675.2	Actn4	NP_113863.2	ILMN_1376987	0003140075	S	2789	GCGCCCTTGACTACAAGTCCTTCTCTACAGCCCTCTATGGGGAGAGCGAC	1	-	84001762-84001811	1q21	Rattus norvegicus actinin alpha 4 (Actn4), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence ISS]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding [goid 31143] [evidence ISS]; A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding [goid 31143] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; Any process that activates, maintains or increases the rate of pinocytosis. Pinocytosis is the process whereby cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes [goid 48549] [evidence ISS]; Any process that activates, maintains or increases the rate of pinocytosis. Pinocytosis is the process whereby cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes [goid 48549] [evidence IEA]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence IEA]	Interacting selectively with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose [goid 1882] [evidence ISS]; Interacting selectively with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose [goid 1882] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665045-I	ILMN_51482	CD97_PREDICTED	XM_574215.1	XM_574215.1		361383	62665045	XM_574215.1	Cd97_predicted	XP_574215.1	ILMN_1376032	0000730605	S	469	CTGGTGCCCAGAAAACCCACCCAGAGGTGTCTCAGAGGGAGGAAGCTGAA				19q11	PREDICTED: Rattus norvegicus CD97 antigen (predicted) (Cd97_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665890-S	ILMN_48323	RGD1561179_PREDICTED	XM_574742.2	XM_574742.2		499423	109509368	XM_574742.2	RGD1561179_predicted	XP_574742.1	ILMN_1365744	0000840079	S	1608	TGTGGTCATTGTGCTGACCGGATGGCGCCCTGGCTCTGGCTTCACCAACA	20	-	17544170-17544219	20p11	PREDICTED: Rattus norvegicus similar to pyruvate kinase (EC 2.7.1.40) isozyme M2 - rat (predicted) (RGD1561179_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664195-S	ILMN_69629	KIF20A_PREDICTED	XM_341592.3	XM_341592.3		361308	109506391	XM_341592.3	Kif20a_predicted	XP_341593.1	ILMN_1370269	0002370706	S	2788	CGACACTTACTTCCCCGGACACCTACCTGCCAAAGCTCGACAGACAGCAG	18	+	27108235-27108284	18p12	PREDICTED: Rattus norvegicus kinesin family member 20A (predicted) (Kif20a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639336-S	ILMN_293538	RGD1559845_PREDICTED	XM_001079026.1	XM_001079026.1		308494	109461645	XM_001079026.1	RGD1559845_predicted	XP_001079026.1	ILMN_1355973	0006370110	S	2297	GTAACTCACCCCAGCTGATGAGCCTGAGACTTCTGGAGAATCCCTAGCCC					PREDICTED: Rattus norvegicus similar to SPBPJ4664.02 (predicted) (RGD1559845_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31377485-S	ILMN_291406	RAMP3	NM_020100.2	NM_020100.2		56820	31377485	NM_020100.2	Ramp3	NP_064485.2	ILMN_1367854	0002030605	S	1112	GATAGAGAGTGAACCTCCTTCCTGAGGGGTATTCCTGGGGGTGAGGCACG	14	+	87434676-87434725	14q21	Rattus norvegicus receptor (G protein-coupled) activity modifying protein 3 (Ramp3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA];  [goid 15027] [evidence IDA];  [goid 15027] [evidence IEA];  [goid 15027] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62664991-S	ILMN_48824	LOC498928	XM_579887.1	XM_579887.1		498928	62664991	XM_579887.1	LOC498928	XP_579887.1	ILMN_1367377	0006380156	S	9	TGGGGTCGACAGGGGAGTCAAAGACGGAATGGTAGCCATGCAAGCAGCGG					PREDICTED: Rattus norvegicus LOC498928 (LOC498928), mRNA.					
Rattus norvegicus	RefSeq	GI_62649724-S	ILMN_273932	RGD1564163_PREDICTED	XM_001061010.1	XM_001061010.1		500554	109477307	XM_001061010.1	RGD1564163_predicted	XP_001061010.1	ILMN_1372574	0000130402	S	152	TGGACATGAGTGCCCAGGAGACCCCACAGGGTCGAAGATTCCCCATTGAG				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025K23 (predicted) (RGD1564163_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27666997-S	ILMN_281530	MED6_PREDICTED	XM_001055672.1	XM_001055672.1		299180	109479593	XM_001055672.1	Med6_predicted	XP_001055672.1	ILMN_2039276	0000430598	S	702	GTCCGAGGAGAAGGAGAGCGCAAAGAGCGCTCAGCAGACTGTAAGCACTA				6q24	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 6 homolog (yeast) (predicted) (Med6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651019-S	ILMN_281530	MED6_PREDICTED	XM_001055672.1	XM_001055672.1		299180	109479593	XM_001055672.1	Med6_predicted	XP_001055672.1	ILMN_1362759	0002060068	S	768	GCGAATGAGACTTCAGTGAGTGTTGGACAAGAAAGAAGCCGGCAAGCCCC				6q24	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 6 homolog (yeast) (predicted) (Med6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664382-S	ILMN_48051	TICAM2_PREDICTED	XM_344681.3	XM_344681.3		364867	109506572	XM_344681.3	Ticam2_predicted	XP_344682.3	ILMN_1357791	0003130270	S	545	CTCCGTTGGCGCTGCAAACCATCAATGCCTTAGAGGAAGAAAGCCAAGGC	18	-	40779022-40779071	18q11	PREDICTED: Rattus norvegicus toll-like receptor adaptor molecule 2 (predicted) (Ticam2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656329-S	ILMN_267265	LOC691982	XM_001080584.1	XM_001080584.1		691982	109488390	XM_001080584.1	LOC691982	XP_001080584.1	ILMN_1374398	0005080605	S	272	TTCGGAAGACCAAGATCCCCCAGTACACCAGGGAAGCTCTCTGTGCTCCT	10	-	56721128-56721142:56721240-56721274	10q24	PREDICTED: Rattus norvegicus hypothetical protein LOC691982 (LOC691982), mRNA.					
Rattus norvegicus	RefSeq	GI_62651477-S	ILMN_279614	RGD1309696_PREDICTED	XM_001072924.1	XM_001072924.1		314478	109480048	XM_001072924.1	RGD1309696_predicted	XP_001072924.1	ILMN_1366190	0000610040	S	18675	GCCCAGAAGCACTGAAGATGTCGAAGGCCAGGCAGAACACAAGCTCCAGG				6q32	PREDICTED: Rattus norvegicus similar to KIAA2019 protein (predicted) (RGD1309696_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654998-S	ILMN_262376	RGD1560332_PREDICTED	XM_001057968.1	XM_001057968.1		503254	109486994	XM_001057968.1	RGD1560332_predicted	XP_001057968.1	ILMN_1362564	0003190484	S	531	GAGGCGGACTCTGTGCCTACAGTAAAGGTCCCAACTTTGTCCGAAGCAAC				9q21	PREDICTED: Rattus norvegicus similar to Lysozyme g-like protein 1 precursor (predicted) (RGD1560332_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027466-S	ILMN_269261	TAS2R121	NM_023997.1	NM_023997.1		78983	13027466	NM_023997.1	Tas2r121	NP_076487.1	ILMN_1364710	0004230398	S	642	CAGTTCCAGAGGGGAACGAGACCCTAGCACAAAAGCCCATGTGAATGCCC	4	-	170016074-170016123	4q42	Rattus norvegicus taste receptor, type 2, member 121 (Tas2r121), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R7	T2R7
Rattus norvegicus	RefSeq	GI_62652748-S	ILMN_273157	RGD1562823_PREDICTED	XM_001076866.1	XM_001076866.1		500907	109482584	XM_001076866.1	RGD1562823_predicted	XP_001076866.1	ILMN_1358842	0000050239	S	112	AGGGCGAGAGCCAAGGCCAAACAGGCCGTGAAACTACGGAACTCAGCGAA				7q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2510038A11 (predicted) (RGD1562823_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657552-S	ILMN_55671	LOC360689	XM_340960.2	XM_340960.2		360689	62657552	XM_340960.2	LOC360689	XP_340961.2	ILMN_1356071	0000070040	S	657	TTTCCACAGGAGCCAGTGTGTGGGGCAGATGCTGCTGAACGCGAAGCTCA					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC360689), mRNA.					
Rattus norvegicus	RefSeq	GI_62645323-S	ILMN_53201	SSFA2_PREDICTED	XM_230036.4	XM_230036.4		311146	109468357	XM_230036.4	Ssfa2_predicted	XP_230036.4	ILMN_1362420	0005860377	S	3930	CTCTCTGATGCCAACGGCTGAGGAAATGCACCGGAATGTGGAGCAGGACG	3	+	62465499-62465548	3q24	PREDICTED: Rattus norvegicus sperm specific antigen 2 (predicted) (Ssfa2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648828-S	ILMN_274899	RGD1565232_PREDICTED	XM_001068775.1	XM_001068775.1		500443	109476384	XM_001068775.1	RGD1565232_predicted	XP_001068775.1	ILMN_1350871	0002480037	S	1245	TTGGCTGGGGAAGCAAACCGAAGCTCATGGCAGTAACAGGAGGGCGTCCA				5q22	PREDICTED: Rattus norvegicus RGD1565232 (predicted) (RGD1565232_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424303-S	ILMN_281539	CHRNB3	NM_133597.1	NM_133597.1		171131	19424303	NM_133597.1	Chrnb3	NP_598281.1	ILMN_1348908	0002450411	S	2432	GCACATCCCCAGTGACACACTTCATCCAGCAAAACTCCACCTCTAGGTCC	16	-	69028750-69028799	16q12.3	Rattus norvegicus cholinergic receptor, nicotinic, beta 3 (Chrnb3), mRNA.	A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	 [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_42558276-S	ILMN_273307	FCAR	NM_201992.1	NM_201992.1		365183	42558276	NM_201992.1	Fcar	NP_973721.1	ILMN_1358847	0001450139	S	1483	GCCTGTGGGGTATTTTCTTGATTAACGGTTGCTGTGGGAGCAGGGAGGCC	1	-	68976751-68976800	1q12	Rattus norvegicus IgA Fc receptor (Fcar), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]	 [goid 5057] [evidence TAS]; Interacting selectively with an immunoglobulin of an IgA isotype [goid 19862] [evidence TAS]	CD89	CD89
Rattus norvegicus	RefSeq	GI_62666591-S	ILMN_263549	WAS_PREDICTED	XM_001063310.1	XM_001063310.1		317371	109511574	XM_001063310.1	Was_predicted	XP_001063310.1	ILMN_1370122	0005690044	S	1423	GGAGAACTCAGTACCGCAAGCACTCCCTCAGCAGTCAGAAGGCCTAGTGG				Xq13	PREDICTED: Rattus norvegicus Wiskott-Aldrich syndrome homolog (human) (predicted) (Was_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657477-S	ILMN_67263	RGD1306926_PREDICTED	XM_221197.4	XM_221197.4		303742	109489499	XM_221197.4	RGD1306926_predicted	XP_221197.4	ILMN_1366318	0006100440	S	2555	CAGATCCATGCCAACCACCAGGAACTGCTCCGTGAAGTGCAAACCCTGCG	10	-	109798094-109798123:109798366-109798385	10q32.3	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22175 (predicted) (RGD1306926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718356-S	ILMN_55362	LOC302199	XM_217542.4	XM_217542.4		302199	109513544	XM_217542.4	LOC302199	XP_217542.4	ILMN_1368415	0005050020	S	425	GAGAGACACCTTGGGAGACCGCCTTTCATTACGTGTGCTAGAAGAGACAC	Un|NW_047883.1	-	2238301-2238350		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC302199), mRNA.					
Rattus norvegicus	RefSeq	GI_62717834	ILMN_50891	LOC291863	XM_212837.3	XM_212837.3		291863	62717834	XM_212837.3	LOC291863	XP_212837.3	ILMN_1649844	0003850309	S	1650	CCCATCTGTGCTGTCTGTACTGCCTATAGAGTTGGGTCATATATTTGCCA					PREDICTED: Rattus norvegicus carboxylesterase-like (LOC291863), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62717992-S	ILMN_59707	LOC301926	XM_229422.3	XM_229422.3		301926	62717992	XM_229422.3	LOC301926	XP_229422.3	ILMN_1357224	0006200184	S	914	GAATTCACTCAACACCTGCGCAGGACTCACCGAGCTTTCCTATAGACCAC					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC301926), mRNA.					
Rattus norvegicus	RefSeq	GI_58865857-A	ILMN_273283	TFG	NM_001012144.1	NM_001012144.1		360709	58865857	NM_001012144.1	Tfg	NP_001012144.1	ILMN_1376396	0002100152	S	1397	GCTCGTAACCGTCCTCCTTTTGGTCAGGGCTATACCCAACCTGGACCTGG	11	+	44852591-44852640	11q12	Rattus norvegicus Trk-fused gene (Tfg), mRNA.		Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661074-S	ILMN_56600	LOC501948	XM_577375.1	XM_577375.1		501948	62661074	XM_577375.1	LOC501948	XP_577375.1	ILMN_1370681	0005690390	S	780	AATGGACTTGGAGACGTGGGAGGAAGTCATGCTCCATGGCTACTGTGGAC					PREDICTED: Rattus norvegicus similar to glutaredoxin 1 (thioltransferase) (LOC501948), mRNA.					
Rattus norvegicus	RefSeq	GI_21489988-S	ILMN_286416	KCNH8	NM_145095.1	NM_145095.1		246325	21489988	NM_145095.1	Kcnh8	NP_659563.1	ILMN_1360312	0002190056	S	3249	CTTGGGACCGAGAAGGAATGATGTCAGCCTCTACAGAACCCTTGGAGAAC	9	-	2086135-2086184	9q11	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 8 (Kcnh8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IMP]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IMP]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Elk1; Ets-1; ELK3	Elk1; Ets-1; ELK3
Rattus norvegicus	RefSeq	GI_62662579-S	ILMN_63405	LOC290704	XM_214338.3	XM_214338.3		290704	62662579	XM_214338.3	LOC290704	XP_214338.3	ILMN_1350576	0003710278	S	2511	GCTTTCCAGCCTGAAGCCAGCCCATCTCACCTGACACTGAACAGCGGCTT					PREDICTED: Rattus norvegicus similar to palladin (LOC290704), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302116-S	ILMN_266186	FNBP1	NM_138914.1	NM_138914.1		192348	20302116	NM_138914.1	Fnbp1	NP_620269.1	ILMN_1373297	0006180520	S	1528	TGCGCCCAGGACCGGGAGAGCCCAGATGGTAGTTACACAGAAGAGCAAAG	3	-	10094198-10094247	3p12	Rattus norvegicus formin binding protein 1 (Fnbp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 14732713] [evidence IPI]; Interacting selectively with a lipid [goid 8289] [evidence IEA]	Rnd2	Rnd2
Rattus norvegicus	RefSeq	GI_62078972-S	ILMN_288522	MIF4GD	NM_001014122.1	NM_001014122.1		360659	62078972	NM_001014122.1	Mif4gd	NP_001014144.1	ILMN_1367582	0001660010	S	1207	GCCTGTTTTCTCCAGTCCATTTTCATGAGTGACTGCCTCACCAGGTTGGG	10	-	105687255-105687304	10q32.3	Rattus norvegicus MIF4G domain containing (Mif4gd), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1309685	RGD1309685
Rattus norvegicus	RefSeq	GI_11993953-S	ILMN_297889	METAP2	NM_022539.1	NM_022539.1		64370	11993953	NM_022539.1	Metap2	NP_071984.1	ILMN_1357283	0002510156	S	1468	CCATACTCTGCGCCCAACCTGTAAAGAAGTTGTCAGCAGAGGAGATGACT	7	-	30974498-30974547	7q13	Rattus norvegicus methionyl aminopeptidase 2 (Metap2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The modification of peptidyl-methionine [goid 18206] [evidence ISS]; The alteration of the N-terminal amino acid residue in a protein [goid 31365] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]	Amp2; Mnpep; p67	Amp2; Mnpep; p67
Rattus norvegicus	RefSeq	GI_62664906-S	ILMN_273849	RGD1563994_PREDICTED	XM_001064713.1	XM_001064713.1		307713	109508483	XM_001064713.1	RGD1563994_predicted	XP_001064713.1	ILMN_1362050	0006860113	S	1341	CATCACGGAGGAAGAGTTTTGCACCATTCTGCAGGCTTCTCTCGGAGTGC					PREDICTED: Rattus norvegicus similar to hypothetical protein A330042H22 (predicted) (RGD1563994_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51571898-S	ILMN_270768	TMPRSS11C	NM_001003979.1	NM_001003979.1		408213	51571898	NM_001003979.1	Tmprss11c	NP_001003979.1	ILMN_1349566	0005910672	S	1134	GGGCATCTGGTTCCTTGCTGGTATTGTAAGCTGGGGAGATGAATGTGCAC	14	+	23605934-23605983	14p21	Rattus norvegicus transmembrane protease, serine 11c (Tmprss11c), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653803-S	ILMN_48473	SMAD6_PREDICTED	XM_345947.3	XM_345947.3		367100	109483620	XM_345947.3	Smad6_predicted	XP_345948.2	ILMN_1367741	0002650131	S	2478	GTTGGCTGGAGATCCTCCTCAACAACCACAGATAGCAAAGCGGCTGCCAC	8	-	68144754-68144769:68144770-68144803	8q24	PREDICTED: Rattus norvegicus MAD homolog 6 (Drosophila) (predicted) (Smad6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655095-S	ILMN_65435	NIF3L1_PREDICTED	XM_217407.2	XM_217407.2		301431	62655095	XM_217407.2	Nif3l1_predicted	XP_217407.2	ILMN_1373160	0004070156	S	963	CCTTAGAGTCTCCAGTCAAAGTTGTGGCCCTGTGTGCTGGTTCTGGGGGC				9q31	PREDICTED: Rattus norvegicus Ngg1 interacting factor 3-like 1 (S. pombe) (predicted) (Nif3l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659586-S	ILMN_58055	LOC304920	XM_222806.3	XM_222806.3		304920	62659586	XM_222806.3	LOC304920	XP_222806.3	ILMN_1365464	0004480670	S	3459	CAGCTTGTGTGAAGGAACTCCAAGCCAGCCAAGCATGTGAGCAGAGCTGG				13q22	PREDICTED: Rattus norvegicus similar to Kelch-like protein X (predicted) (LOC304920), mRNA.					
Rattus norvegicus	RefSeq	GI_6978714-S	ILMN_290230	CSTB	NM_012838.1	NM_012838.1		25308	6978714	NM_012838.1	Cstb	NP_036970.1	ILMN_1353139	0002630128	S	421	GGAATCCGTGTTTGGGACCACGAAGTAAATACCCCTCTGTGAGCAGCTTC	20	-	10576764-10576813	20p12	Rattus norvegicus cystatin B (Cstb), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins [goid 10466] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEP]	Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS];  [goid 4869] [evidence TAS];  [goid 4869] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Stfb; CYB; MGC105499; EPM1	Stfb; CYB; MGC105499; EPM1
Rattus norvegicus	RefSeq	GI_11559952-S	ILMN_276557	LOC683548	XM_001066476.1	XM_001066476.1		683548	109493865	XM_001066476.1	LOC683548	XP_001066476.1	ILMN_1371554	0005420706	S	3662	TGCGAACAAGCCCAGGTGACCCCAGAGAAGCACAGGAGCAGCCAAACGAA					PREDICTED: Rattus norvegicus similar to roundabout homolog 1 (LOC683548), mRNA.					
Rattus norvegicus	RefSeq	GI_62648081-S	ILMN_51250	BMS1L	XM_342746.3	XM_342746.3		362426	109472545	XM_342746.3	Bms1l	XP_342747.2	ILMN_1362980	0006620315	S	4151	GCCTGGAGCAGCATAGAAAGACTGCATCCCCGCTCGTTCACAGCATCCAG	4	-	154687279-154687328	4q42	PREDICTED: Rattus norvegicus BMS1-like, ribosome assembly protein (yeast) (Bms1l), mRNA.					
Rattus norvegicus	RefSeq	GI_47576050-S	ILMN_294397	OLR1428	NM_001000011.1	NM_001000011.1		287318	47576050	NM_001000011.1	Olr1428	NP_001000011.1	ILMN_1372607	0004610484	S	886	GTCACAGAGGCTATGAAGAAATTCTTAGGTATGAAACCCCTCCTTCGAGA	10	+	44428362-44428411	10q22	Rattus norvegicus olfactory receptor 1428 (Olr1428), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-44441100-44442047_ORF; Olr1428	ratchr10-44441100-44442047_ORF; Olr1428
Rattus norvegicus	RefSeq	GI_62642680	ILMN_55914	NR2F1	XM_346611.2	XM_346611.2		81808	62642680	XM_346611.2	Nr2f1	XP_346612.2	ILMN_1649840	0005720048	S	1857	CAGGAGCGGCCCACTCTGCAGGAATGCAACCTGAGCTGCAAACCATGAGA				2q11	PREDICTED: Rattus norvegicus nuclear receptor subfamily 2, group F, member 1 (Nr2f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164006-A	ILMN_289763	TRIM10	NM_001009176.1	NM_001009176.1		294210	57164006	NM_001009176.1	Trim10	NP_001009176.1	ILMN_1376372	0002900273	S	1939	TGCTGCAGGCTGGTCTCACCACTGTCATCAACGGGCACAGACATGGATGT	20	-	1782137-1782186	20p12	Rattus norvegicus tripartite motif protein 10 (Trim10), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rnf9; Rfb30	Rnf9; Rfb30
Rattus norvegicus	RefSeq	GI_62660478-S	ILMN_50125	KLF3_MAPPED	XM_223423.4	XM_223423.4		114845	109499690	XM_223423.4	Klf3_mapped	XP_223423.4	ILMN_1354006	0006450253	S	995	CCCCGGATACCCAAAGGAAGCGCAGGATACACAGATGCGACTATGATGGA	14	-	46210245-46210294	14p11	PREDICTED: Rattus norvegicus Kruppel-like factor 3 (basic) (mapped) (Klf3_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62660974-S	ILMN_283376	LOC360997	NM_001037205.1	NM_001037205.1		360997	81295366	NM_001037205.1	LOC360997	NP_001032282.1	ILMN_1358861	0001500725	S	2598	AGAGTATTTCAAGGGAGTGTAAGGAAAATGAGAGAGGTGGGACGGAGGGG	14	-	5573210-5573259	14p22	Rattus norvegicus similar to ATP-binding cassette, sub-family G (WHITE), member 3 (LOC360997), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	MGC112634	MGC112634
Rattus norvegicus	RefSeq	GI_62649972-S	ILMN_56946	PLEKHM2_PREDICTED	XM_233611.4	XM_233611.4		313667	109475769	XM_233611.4	Plekhm2_predicted	XP_233611.4	ILMN_1355108	0000540088	S	2253	GCAGCCACGATCACTTGACTCTCTTCCTGACCTTGGTGTCTGGGTTGGAG	5	-	160542104-160542153	5q36	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family M (with RUN domain) member 2 (predicted) (Plekhm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758835-S	ILMN_266144	IL1R2	NM_053953.1	NM_053953.1		117022	16758835	NM_053953.1	Il1r2	NP_446405.1	ILMN_1349030	0004590450	S	1285	CAGGCTGGAAAGACGTATGGGCTGACCAAGCTACCGACTGACAACCAGGA	9	+	39319578-39319627	9q21	Rattus norvegicus interleukin 1 receptor, type II (Il1r2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4910] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_48675856-S	ILMN_263525	P2RY6	NM_057124.2	NM_057124.2		117264	48675856	NM_057124.2	P2ry6	NP_476465.1	ILMN_1375201	0000380148	S	2016	GACACAGATGACAGAACGGGATACTCCACCTTGGCTTCACGGTGCCTCCT	1	-	158381527-158381576	1q32	Rattus norvegicus pyrimidinergic receptor P2Y, G-protein coupled, 6 (P2ry6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence ISS]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA];  [goid 45029] [evidence ISS];  [goid 45029] [evidence IEA]	P2y6	P2y6
Rattus norvegicus	RefSeq	GI_62642326-S	ILMN_58824	CNNM1_PREDICTED	XM_219879.4	XM_219879.4		309387	109460141	XM_219879.4	Cnnm1_predicted	XP_219879.4	ILMN_1350425	0002360176	S	3505	CCGGGGAAGGACAGATCAGCGGAATGAAGCGAGAGGAATCCCCAAGTCAC	1	-	247351462-247351511	1q54	PREDICTED: Rattus norvegicus cyclin M1 (predicted) (Cnnm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649290-S	ILMN_67326	LOC500511	XM_575874.1	XM_575874.1		500511	62649290	XM_575874.1	LOC500511	XP_575874.1	ILMN_1354918	0001500446	S	808	CAGAGGGCAGCCTGGTGTTGGCTGAAAAGCCACAGGAACACATCAGAATG				5q33	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC35130 (LOC500511), mRNA.					
Rattus norvegicus	RefSeq	GI_62642427-S	ILMN_285820	RGD1311783_PREDICTED	XM_001059424.1	XM_001059424.1		294012	109463961	XM_001059424.1	RGD1311783_predicted	XP_001059424.1	ILMN_1349646	0006180451	S	342	GTCGCCTGACCTGCAAGACCAGCTGAGTCATTTACTGAAGTAGCTCTCGC				1q54	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010012O05 (predicted) (RGD1311783_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645211-S	ILMN_280704	RGD1566198_PREDICTED	XR_007404.1	XR_007404.1		502629	109469986	XR_007404.1	RGD1566198_predicted		ILMN_1374430	0006130040	S	369	CCAGAGAGTTCGGATGAGGACAGGTGTTGCTTGTTCTGTCTCTCAAGTCC				3q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (predicted) (RGD1566198_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662616-A	ILMN_292398	GLRA3	NM_053724.2	NM_053724.2		114516	77404295	NM_053724.2	Glra3	NP_446176.2	ILMN_1376711	0003120148	S	434	CTGGATTTTACTTCTGGGAAGCCGCACTGTTACTGAGTTTGGTGGCCACG	16	+	37741274-37741310:37780643-37780655	16p11	Rattus norvegicus glycine receptor, alpha 3 subunit (Glra3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663811-S	ILMN_273042	LOC498793	XR_009617.1	XR_009617.1		498793	109506147	XR_009617.1	LOC498793		ILMN_1369124	0005570504	S	2306	CTCAGCCTGGTGTCAGATCCAGAGTCAGGGCTTTCAGTCAACGGTCAGCT				17q12.3	PREDICTED: Rattus norvegicus similar to inter-alpha-inhibitor H2 chain (LOC498793), misc RNA.		The chemical reactions and pathways involving hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine [goid 30212] [evidence IEA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645805-S	ILMN_53558	LOC499883	XM_575228.1	XM_575228.1		499883	62645805	XM_575228.1	LOC499883	XP_575228.1	ILMN_1372473	0006450672	S	767	CCCGGAGGGGTGGTGAACCTTACAGGTGTGGTATCTAAGGCAACAGATGA				3q36	PREDICTED: Rattus norvegicus similar to GA binding protein beta chain (GABP-beta-2 subunit) (GABP-2) (GABP-beta-1 subunit) (GABPB-1) (Transcription factor E4TF1-53) (Transcription factor E4TF1-47) (Nuclear respiratory factor-2) (LOC499883), mRNA.					
Rattus norvegicus	RefSeq	GI_62650702-S	ILMN_49934	NFKBIA	XM_343065.3	XM_343065.3		25493	109478176	XM_343065.3	Nfkbia	XP_343066.2	ILMN_1356628	0000670129	S	1799	GTTGAACCGCCATAGACTGTAGCTGACCCCAGTGTGCCCTCTCACGTAAG	6	-	75729446-75729495	6q23	PREDICTED: Rattus norvegicus nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, alpha (Nfkbia), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex containing an I-kappaB protein and one or more copies of an NF-kappaB protein; mediates regulation of NF-kappaB activity by I-kappaB [goid 33256] [evidence IC ]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence ISS]; The vectorial transfer of a protein from the cytoplasm into the nucleus, through the nuclear pore and across the nuclear envelope [goid 60] [evidence IEA]; The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus [goid 7253] [evidence IMP]; The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus [goid 7253] [evidence IMP]; The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus [goid 7253] [evidence IMP]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence ISS]; The series of molecular signals generated in response to detection of lipopolysaccharide [goid 31663] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid cell differentiation [goid 45638] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid cell differentiation [goid 45638] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the Notch signaling pathway [goid 45746] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the Notch signaling pathway [goid 45746] [evidence IEA]	Interacting selectively with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus [goid 8139] [evidence IEA]; Interacting selectively with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus [goid 8139] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence IEA]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IC ]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IC ]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IPI]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IEA]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653874-S	ILMN_51739	RNF111_PREDICTED	XM_236380.4	XM_236380.4		300813	109483599	XM_236380.4	Rnf111_predicted	XP_236380.4	ILMN_1354443	0001690538	S	4296	CAGTCATTGGCAGGTATCTATGCATTCGTAGAACTTCTAAGGGTCCCAGG	8	-	74909868-74909917	8q24	PREDICTED: Rattus norvegicus ring finger protein 111 (predicted) (Rnf111_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485402-S	ILMN_54320	CHST7	NM_207600.2	NM_207600.2		302302	83721986	NM_207600.2	Chst7	NP_997483.1	ILMN_1360699	0002470156	S	1492	AGCGGGGATGAACGCGATGTGAAGACCGTCAGGAAAGGGGAGACACCACT	X	-	13852153-13852202	Xq12	Rattus norvegicus carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 (Chst7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence ISS]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence IEA]; The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione [goid 6790] [evidence ISS]; The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione [goid 6790] [evidence IEA]; The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate [goid 30206] [evidence ISS]; The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate [goid 30206] [evidence IEA]	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + N-acetyl-D-glucosamine = adenosine 3',5'-bisphosphate + N-acetyl-D-glucosamine 6-sulfate [goid 1517] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + N-acetyl-D-glucosamine = adenosine 3',5'-bisphosphate + N-acetyl-D-glucosamine 6-sulfate [goid 1517] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate [goid 8459] [evidence ISS]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate [goid 8459] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 2'-O-sulfate. Results in sulfation of glucuronic acid and iduronic acid residues [goid 34482] [evidence IEA]	MGC124926	MGC124926
Rattus norvegicus	RefSeq	GI_62665872-S	ILMN_69895	LOC502416	XM_580246.1	XM_580246.1		502416	62665872	XM_580246.1	LOC502416	XP_580246.1	ILMN_1351923	0001580450	S	948	AGCTCTGCTGCTGGTGTGAGGCCAATGCTCACCTATGACAGGGCAACCTC					PREDICTED: Rattus norvegicus LOC502416 (LOC502416), mRNA.					
Rattus norvegicus	RefSeq	GI_62653086-S	ILMN_56309	KRT2-7	XM_217035.4	XM_217035.4		300242	109481304	XM_217035.4	Krt2-7	XP_217035.2	ILMN_1356588	0001940537	S	1650	TTCCATCAAGACTACATCTACCGCCCGCAGGGGCACCCACCATTGAGCAC	7	+	140175487-140175532:140175533-140175536	7q36	PREDICTED: Rattus norvegicus keratin complex 2, basic, gene 7 (Krt2-7), mRNA.					
Rattus norvegicus	RefSeq	GI_25282432-S	ILMN_60133	PROSAPIP1	NM_172022.2	NM_172022.2		280670	74047735	NM_172022.2	Prosapip1	NP_742019.2	ILMN_1370419	0002510142	S	2069	GGACCCCCTCCCGCCTGGAGCGCATCGAGTCCACAGAAATCTGATTTATC	3	-	118265035-118265041:118265042-118265084	3q36	Rattus norvegicus ProSAPiP1 protein (Prosapip1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661348-S	ILMN_275832	METTL3	NM_001024794.1	NM_001024794.1		361035	67078429	NM_001024794.1	Mettl3	NP_001019965.1	ILMN_1366172	0001500372	S	1551	CCAGGGTCTGGATTGCGATGTGATTGTAGCTGAGGTTCGTTCCACCAGTC	15	-	27745370-27745386:27745685-27745717	15p14	Rattus norvegicus methyltransferase-like 3 (Mettl3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor [goid 1510] [evidence ISS]; The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + m(7)G(5')pppAm = S-adenosyl-L-homocysteine + m(7)G(5')pppm(6)Am [goid 16422] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47058971-S	ILMN_286126	OLR1469	NM_212527.1	NM_212527.1		404976	47058971	NM_212527.1	Olr1469	NP_997692.1	ILMN_1348910	0002640059	S	566	GCTCTGACACCCGTGTTAATGAGGTTGTGATATTTATTGTGGTCAGCCTC	10	-	60284098-60284147	10q24	Rattus norvegicus olfactory receptor Olr1469 (Olr1469), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665995-S	ILMN_53171	LOC499434	XM_574757.1	XM_574757.1		499434	62665995	XM_574757.1	LOC499434	XP_574757.1	ILMN_1372601	0005130347	S	324	CCAACTTTCACAGATGTCTGGTACCTTCAGTACGTGGCCCAAACTGCAGC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC499434), mRNA.					
Rattus norvegicus	RefSeq	GI_62656656-S	ILMN_298865	ZNF830	NM_001037360.1	NM_001037360.1		497967	82654207	NM_001037360.1	Znf830	NP_001032437.1	ILMN_1369289	0000580273	S	876	TCGCTGAAGAGGATGAGGAGGGACGGCTGGACCGGCAGATTGGAGAGATT	10	+	70984642-70984691	10q26	Rattus norvegicus zinc finger protein 830 (Znf830), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation [goid 1832] [evidence IEA]; An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation [goid 1832] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC125001	MGC125001
Rattus norvegicus	RefSeq	GI_27693389-S	ILMN_272001	RGD1562346_PREDICTED	XM_001061909.1	XM_001061909.1		295274	109467210	XM_001061909.1	RGD1562346_predicted	XP_001061909.1	ILMN_2040673	0002760646	S	354	GGTCTACAATCACATCGCGGGAGATCCAGACGGCGGTGCGTCTCCTACTG				2q34	PREDICTED: Rattus norvegicus similar to histone H2b-613 (predicted) (RGD1562346_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641956-S	ILMN_66851	LOC502373	XM_346329.2	XM_346329.2		502373	62641956	XM_346329.2	LOC502373	XP_346330.2	ILMN_1363617	0003520181	S	592	ATCCCACTATAGAGGTGAGCTCTGACTACCTGCCAGAGGACTCCTACCGG					PREDICTED: Rattus norvegicus similar to Transforming protein p21/H-Ras-1 (c-H-ras) (LOC502373), mRNA.					
Rattus norvegicus	RefSeq	GI_62655573-A	ILMN_292819	ADCYAP1	NM_016989.1	NM_016989.1		24166	8392854	NM_016989.1	Adcyap1	NP_058685.1	ILMN_1376782	0001740066	S	2045	TCTAGTCCCTCTGCAGGTTCCACTGCCTGACAGATCAGGTGCTGGTGTTG	9|NW_047828.1	+	22490-22539		Rattus norvegicus adenylate cyclase activating polypeptide 1 (Adcyap1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]	The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence NAS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]	 [goid 5057] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Pacap	Pacap
Rattus norvegicus	RefSeq	GI_62653817-S	ILMN_273961	NOPE_PREDICTED	XM_001076376.1	XM_001076376.1		363081	109484874	XM_001076376.1	Nope_predicted	XP_001076376.1	ILMN_1371672	0004780358	S	3560	CAGAGGTTCTGCCTCCCACTGCTGGGGTCGTGGATTTGTCCCAAGGAGCA				8q24	PREDICTED: Rattus norvegicus neighbor of Punc E11 (predicted) (Nope_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654520-A	ILMN_288117	TGM4	NM_022713.1	NM_022713.1		64679	12083684	NM_022713.1	Tgm4	NP_073204.1	ILMN_1376251	0005570347	S	1892	AAGCCTGGGCCTCAATAACATGAAGTCCTGGGAGCAAGAGACGGTGCCGC	8	+	127816687-127816728:127818548-127818555	8q32	Rattus norvegicus transglutaminase 4 (prostate) (Tgm4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The act of sexual union between male and female, involving the transfer of sperm [goid 7620] [evidence IEA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence IEA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence IEA]	Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IEA]	Dp1	Dp1
Rattus norvegicus	RefSeq	GI_62640884	ILMN_59180	RGD1306766_PREDICTED	XM_218888.3	XM_218888.3		308810	62640884	XM_218888.3	RGD1306766_predicted	XP_218888.3	ILMN_1650780	0006760438	S	1617	CAGAGAGTTGATGGATCGCTTGGAGCAAGTGCAGCTCACAGAGGAGTGAG				1q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23514 (predicted) (RGD1306766_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647755-S	ILMN_59015	LOC500247	XM_575597.1	XM_575597.1		500247	62647755	XM_575597.1	LOC500247	XP_575597.1	ILMN_1360749	0005890280	S	6685	GGATGCTGAGAATGATCCTATTAGCTCCAGGGCAGCGTTCCTGGCCTTGC				4q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010301N04 (LOC500247), mRNA.					
Rattus norvegicus	RefSeq	GI_62654351-S	ILMN_52806	SMARCC1_PREDICTED	XM_236644.4	XM_236644.4		301020	109483983	XM_236644.4	Smarcc1_predicted	XP_236644.2	ILMN_1361331	0001740398	S	3323	GTACCCCTCACAGCACCAAACGGCATGTGTAAGTAGCCCAGCGGGAAGAC	8	+	114608778-114608813:114608814-114608827	8q32	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (predicted) (Smarcc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649367-S	ILMN_302902	WDR78	NM_001024786.1	NM_001024786.1		313417	67078447	NM_001024786.1	Wdr78	NP_001019957.1	ILMN_1357864	0005570035	S	2353	TGCCAAGCAGACAGATTGCCTTCTAGTGGGAGACAGCGACGGACAGGTCG	5	-	123965433-123965482	5q34	Rattus norvegicus WD repeat domain 78 (Wdr78), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]	RGD1311027	RGD1311027
Rattus norvegicus	RefSeq	GI_62655370-S	ILMN_66141	RGD1560622_PREDICTED	XM_580169.2	XM_580169.2		501182	109486331	XM_580169.2	RGD1560622_predicted	XP_580169.1	ILMN_1367301	0001090315	S	620	CACCCCACATCCAGCCACATCCGTCTCAGTGACATGCGAAGAAGAGGACC	9	-	86803419-86803468	9q35	PREDICTED: Rattus norvegicus RGD1560622 (predicted) (RGD1560622_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54114992-S	ILMN_264716	RAP1A	NM_001005765.1	NM_001005765.1		295347	54114992	NM_001005765.1	Rap1a	NP_001005765.1	ILMN_1363284	0000780176	S	2150	AGCAGACGGCAAGATTAGGAAACCCTGTGCCTTGTCCCCGAAAATCCAGG	2	-	200980558-200980607	2q34	Rattus norvegicus RAP1A, member of RAS oncogene family (Rap1a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that stimulates the exchange of guanyl nucleotides by a GTPase [goid 32045] [evidence ISS]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with any member of the Ras superfamily of monomeric GTPases [goid 17016] [evidence ISS]	MGC94873; rap 1A; RAP-1A; MGC93785	MGC94873; rap 1A; RAP-1A; MGC93785
Rattus norvegicus	RefSeq	GI_62653036-I	ILMN_53846	TUBA6_PREDICTED	XM_576340.1	XM_576340.1		300218	62653036	XM_576340.1	Tuba6_predicted	XP_576340.1	ILMN_1376233	0002360056	S	380	CCAGGGTATATAAGCACTCTCCGGGAGGCGGACCTCACACAGCTTCTCCC				7q36	PREDICTED: Rattus norvegicus tubulin, alpha 6 (predicted) (Tuba6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651154-S	ILMN_264450	RGD1564044_PREDICTED	XM_001065440.1	XM_001065440.1		299255	109479866	XM_001065440.1	RGD1564044_predicted	XP_001065440.1	ILMN_1355323	0004480577	S	3554	TGGATCAGGCTCTGTGGAGGACGACTGATCTTGCAGTTTCCTTAGACCTC				6q32	PREDICTED: Rattus norvegicus similar to kinesin family member 4A (predicted) (RGD1564044_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661536-S	ILMN_48135	LOC305911	XM_224235.3	XM_224235.3		305911	62661536	XM_224235.3	LOC305911	XP_224235.2	ILMN_1362712	0000050504	S	2471	CGCTGGCATTTTATTCTCAGGGACCCGAAGAGTGGGAGGCTGCAGGAAAG				15p12	PREDICTED: Rattus norvegicus similar to Zinc finger protein 198 (Fused in myeloproliferative disorders protein) (Rearranged in atypical myeloproliferative disorder protein) (predicted) (LOC305911), mRNA.					
Rattus norvegicus	RefSeq	GI_62640857-S	ILMN_57825	MESP2_PREDICTED	XM_218825.4	XM_218825.4		293046	109458952	XM_218825.4	Mesp2_predicted	XP_218825.4	ILMN_1368993	0002570044	S	937	TGCTGGGACCACAGTGCAGAGGCACTCTCCAGCTCAGAGGACCAGGGTTC	1	+	135591840-135591889	1q31	PREDICTED: Rattus norvegicus mesoderm posterior 2 (predicted) (Mesp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865553-A	ILMN_283261	PYCRL	NM_001011993.1	NM_001011993.1		300035	58865553	NM_001011993.1	Pycrl	NP_001011993.1	ILMN_1376386	0004560541	S	1253	GCACCTCCCAGCCAGTTACAGTTGTGTCCTCATTGTGCAGGGCCTCATGG	7	-	113895951-113896000	7q34	Rattus norvegicus pyrroline-5-carboxylate reductase-like (Pycrl), mRNA.		The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins [goid 6561] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+ [goid 4735] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658542-S	ILMN_273993	LOC498155	XM_001074556.1	XM_001074556.1		498155	109496674	XM_001074556.1	LOC498155	XP_001074556.1	ILMN_1359963	0004540402	S	928	GAAGTCAGTACCACGACAGCACTGGATATGAACGCACAGGACAACGGTGC				12q11	PREDICTED: Rattus norvegicus LRRGT00167 (LOC498155), mRNA.					
Rattus norvegicus	RefSeq	GI_62639882-S	ILMN_267337	RGD1563539_PREDICTED	XM_001080380.1	XM_001080380.1		502334	109461821	XM_001080380.1	RGD1563539_predicted	XP_001080380.1	ILMN_1373143	0001450347	S	729	CTCCGAGAAGAACTTGACCCTCCCTAGTCTGTCCTGGGAACAAATGGGCA				1q22	PREDICTED: Rattus norvegicus similar to carcinoembryonic antigen-related cell adhesion molecule 5 (predicted) (RGD1563539_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662012-S	ILMN_276248	RGD1562819_PREDICTED	XR_009094.1	XR_009094.1		364457	109502887	XR_009094.1	RGD1562819_predicted		ILMN_1357668	0007050142	S	361	CGTTCCTGGCAGCGATTCAGCGGAGAGTGCCGAGAAGGAGATTGGTTTAT				15q21	PREDICTED: Rattus norvegicus similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18) (predicted) (RGD1562819_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577880-S	ILMN_300362	OLR1169	NM_001000434.1	NM_001000434.1		300425	47577880	NM_001000434.1	Olr1169	NP_001000434.1	ILMN_1368803	0006510463	S	213	GGGCTTCAGCAGCACCACCATACCAAAAATGCTGATAAACTTGCAGACCT	8	+	18545055-18545104	8q13	Rattus norvegicus olfactory receptor 1169 (Olr1169), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1169	Olr1169
Rattus norvegicus	RefSeq	GI_19424183-S	ILMN_269296	PANK4	NM_133531.1	NM_133531.1		171053	19424183	NM_133531.1	Pank4	NP_598215.1	ILMN_1370097	0006020600	S	2279	GGCCAGCTCTTCAGTGTCATCTTCAAGTACGAGGTCCCAGCCGAGTGAGG	5	+	171783477-171783524:171783525-171783526	5q36	Rattus norvegicus pantothenate kinase 4 (Pank4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester [goid 15937] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + pantothenate = ADP + D-4'-phosphopantothenate [goid 4594] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Fang1	Fang1
Rattus norvegicus	Unigene	Rn.28371	ILMN_160714	RN.28371	Rn.28371		Rn.28371		58477416	BC090019			ILMN_1530400	0001170110	S	1683	CTTTTGCAGAACAGATCAGCTTTTTAATGTTTTTAAATCTCTTTTTCATT					Rattus norvegicus cDNA clone MGC:109551 IMAGE:7325365, complete					
Rattus norvegicus	RefSeq	GI_62667367-S	ILMN_279535	SUHW3_PREDICTED	XM_001069185.1	XM_001069185.1		302812	109512622	XM_001069185.1	Suhw3_predicted	XP_001069185.1	ILMN_1375149	0001050433	S	1868	GGAACTTACGGTGTCACCAGGGAACTCACACGTGTATTGAGTGCCATTCC					PREDICTED: Rattus norvegicus suppressor of hairy wing homolog 3 (Drosophila) (predicted) (Suhw3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655451-S	ILMN_70221	LOC503267	XM_578802.1	XM_578802.1		503267	62655451	XM_578802.1	LOC503267	XP_578802.1	ILMN_1360215	0006420309	S	193	TCCAGGAAGCCACAGCCCTGGAGACACCGGATGTTGGTGATGCTCCACTG					PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC503267), mRNA.					
Rattus norvegicus	RefSeq	GI_40018563-S	ILMN_282736	ORC4L	NM_199092.1	NM_199092.1		295596	40018563	NM_199092.1	Orc4l	NP_954523.1	ILMN_1353734	0003610092	S	1376	CCTACAGATGTCAGGCAGTGGGCAACATCCTCGCTCAGCTGGCTGTGAAG	3	-	29813485-29813487:29813488-29813534	3q12	Rattus norvegicus origin recognition complex, subunit 4-like (yeast) (Orc4l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action [goid 6270] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally [goid 3688] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC72574	MGC72574
Rattus norvegicus	RefSeq	GI_62665908	ILMN_49148	PLN	XM_579462.1	XM_579462.1		64672	62665908	XM_579462.1	Pln	XP_579462.1	ILMN_1650468	0006040176	S	330	TGACAAGCTGTCGCCACCGCAGACCTGCACCATGCCAACGCAGCTTACAA				20q11	PREDICTED: Rattus norvegicus phospholamban (Pln), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IDA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence NAS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence IEA]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence ISS]	 [goid 5246] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of ATP to ADP and orthophosphate [goid 42030] [evidence IDA]; Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of ATP to ADP and orthophosphate [goid 42030] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658435-S	ILMN_50035	PTCD1_PREDICTED	XM_221892.3	XM_221892.3		304278	62658435	XM_221892.3	Ptcd1_predicted	XP_221892.2	ILMN_1349417	0004610162	S	1710	CAGGTGACCCCGAACACCCACATCTACAGCACCCTTATCAACGCAGCCCT					PREDICTED: Rattus norvegicus pentatricopeptide repeat domain 1 (predicted) (Ptcd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644426-I	ILMN_52521	SLC39A8_PREDICTED	XM_575042.1	XM_575042.1		295455	62644426	XM_575042.1	Slc39a8_predicted	XP_575042.1	ILMN_1376054	0002570672	S	3121	GTTGAGTGACTGTTGTGTGCCTGGTGTCATGGGGAGAGAGGCAAGTAGGA				2q43	PREDICTED: Rattus norvegicus solute carrier family 39 (metal ion transporter), member 8 (predicted) (Slc39a8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_44917596-S	ILMN_292164	MRGPRG	NM_203470.1	NM_203470.1		309133	44917596	NM_203470.1	Mrgprg	NP_982296.1	ILMN_1374137	0002690047	S	518	GCACGGCGTGTGGTGCAAGCATGTTTCTCTTAGTCTTTGGGAACTGCTGT	1	-	204154253-204154302	1q41	Rattus norvegicus MAS-related GPR, member G (Mrgprg), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	Mrgg	Mrgg
Rattus norvegicus	RefSeq	GI_62644352-S	ILMN_262601	LOC688869	XM_001068644.1	XM_001068644.1		688869	109458526	XM_001068644.1	LOC688869	XP_001068644.1	ILMN_1362270	0000520358	S	225	CTCAGCCTGGGATGACCGCATAGCAGAAGGCACATTTCCTGGGAAGATCT	1	-	85670058-85670107	1q21	PREDICTED: Rattus norvegicus similar to cytochrome c oxidase, subunit VIb polypeptide 1 (LOC688869), mRNA.					
Rattus norvegicus	RefSeq	GI_62651195-S	ILMN_265221	DICER1	XM_001069041.1	XM_001069041.1		299284	109479875	XM_001069041.1	Dicer1	XP_001069041.1	ILMN_1368122	0002650170	S	6008	AGCTTCCAGACTCACAGGCGGCAAGGCAGTGACCAGAACCATAGCAGCAC				6q32	PREDICTED: Rattus norvegicus Dicer1, Dcr-1 homolog (Drosophila) (Dicer1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]; Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence ISS]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence IEA]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides [goid 30422] [evidence IEA]; Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides [goid 30422] [evidence ISS]; The process by which small interfering RNAs target cognate mRNA molecules for degradation [goid 30423] [evidence IEA]; The process by which small interfering RNAs target cognate mRNA molecules for degradation [goid 30423] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein [goid 35196] [evidence IEA]; Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein [goid 35196] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt [goid 4525] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt [goid 4525] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641245-S	ILMN_272139	ERN2_PREDICTED	XM_001079523.1	XM_001079523.1		365363	109462819	XM_001079523.1	Ern2_predicted	XP_001079523.1	ILMN_1355234	0003520619	S	2821	CAATCTGGCCTCAGGGGTGTCAGAAAGATGGGCAGCAGTGTAAAGGACTG				1q36	PREDICTED: Rattus norvegicus endoplasmic reticulum (ER) to nucleus signalling 2 (predicted) (Ern2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661526-S	ILMN_268835	RNF17_PREDICTED	XM_001059722.1	XM_001059722.1		305908	109502477	XM_001059722.1	Rnf17_predicted	XP_001059722.1	ILMN_1354498	0001050309	S	4851	CAAGAATACCCTACTGTCCCAGGTGGAGCATGGAGGCGTTGTGGACTATG				15p12	PREDICTED: Rattus norvegicus ring finger protein 17 (predicted) (Rnf17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643359-S	ILMN_66944	SPATA5_PREDICTED	XM_342235.3	XM_342235.3		361935	109464771	XM_342235.3	Spata5_predicted	XP_342236.2	ILMN_1372699	0004010040	S	2871	CTGGTCCTCCAAACTGACACCTACTCAGGAGCAGAGATCATAGCAGTCTG	2	+	124090670-124090705:124153790-124153803	2q25	PREDICTED: Rattus norvegicus spermatogenesis associated 5 (predicted) (Spata5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654140-S	ILMN_65250	LOC497833	XM_579421.1	XM_579421.1		497833	62654140	XM_579421.1	LOC497833	XP_579421.1	ILMN_1360534	0001500095	S	12311	GCCGTCCTTGGGAGAGAGGAGCCCTCGCCAGAATGCGGTTGCTGCCCTGT					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019146 (LOC497833), mRNA.					
Rattus norvegicus	RefSeq	GI_62657104-S	ILMN_65787	HDAC5	XM_213469.3	XM_213469.3		84580	62657104	XM_213469.3	Hdac5	XP_213469.3	ILMN_1372068	0002450253	S	2498	GCAGCCCTTGGATGAAGCAGTCTTGCAGCAAAAGCCCAGCATCAATGCAG					PREDICTED: Rattus norvegicus histone deacetylase 5 (Hdac5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin [goid 6325] [evidence TAS]; The modification of histones by removal of acetyl groups [goid 16575] [evidence NAS]	Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62652509-S	ILMN_283426	NDRG1	NM_001011991.1	NM_001011991.1		299923	58865549	NM_001011991.1	Ndrg1	NP_001011991.1	ILMN_2040297	0005130187	A	2407	GGTTTTTGGATTCTGTACATTCCGTGGGAACTTGCTTCCCTTTCCTGCCC	7	-	104302457-104302506	7q33	Rattus norvegicus N-myc downstream regulated gene 1 (Ndrg1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors [goid 45576] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]	Ndr1	Ndr1
Rattus norvegicus	RefSeq	GI_62661414-S	ILMN_63574	LOC364365	XM_344388.2	XM_344388.2		364365	62661414	XM_344388.2	LOC364365	XP_344389.2	ILMN_1362948	0005220056	S	705	GGAACAGGATTCACAGTAGGCATCAAATTCAGGGAGAGCTGCCACTCCAG				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (predicted) (LOC364365), mRNA.					
Rattus norvegicus	RefSeq	GI_62660378-S	ILMN_67521	LOC364139	XM_573586.1	XM_573586.1		364139	62660378	XM_573586.1	LOC364139	XP_573586.1	ILMN_1366973	0006380452	S	0	CCTTTCCACCAGGGCAGCCATCTTCCAGTAACTCGCCAAAATGACAAACA				14p11	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC364139), mRNA.					
Rattus norvegicus	RefSeq	GI_62651465-S	ILMN_277181	RGD1565168_PREDICTED	XM_001071789.1	XM_001071789.1		366733	109480018	XM_001071789.1	RGD1565168_predicted	XP_001071789.1	ILMN_1357192	0000540711	S	830	GCCCTTTCCTGGAGATCACGGCCAAGAGCAAAATGATGGTGGACCGCGTG				6q32	PREDICTED: Rattus norvegicus similar to RAP2A, member of RAS oncogene family (predicted) (RGD1565168_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662848-S	ILMN_285287	ADAM18	XM_001072121.1	XM_001072121.1		57029	109504396	XM_001072121.1	Adam18	XP_001072121.1	ILMN_1366112	0002640044	S	1992	GAGTCAACACGCGGACAGCTGGGTGATCCTGGGCTTCTTCATCTTCCTGC				16q12.4-q12.5	PREDICTED: Rattus norvegicus a disintegrin and metallopeptidase domain 18 (Adam18), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655376-S	ILMN_262850	RGD1565687_PREDICTED	XM_001065629.1	XM_001065629.1		301596	109487479	XM_001065629.1	RGD1565687_predicted	XP_001065629.1	ILMN_1350521	0005690131	S	3849	CTTGGCTTCACCCAGAGGACTGCCGTAAGTGGCTCCGATTTGACACTGCC				9q35	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40243 (predicted) (RGD1565687_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666419-S	ILMN_269334	CUL4B_PREDICTED	XM_001058651.1	XM_001058651.1		302502	109512509	XM_001058651.1	Cul4b_predicted	XP_001058651.1	ILMN_1372413	0004810593	S	3296	CCTGGGTCTTCATGATTCCTTTTTGGAACTGGGGAAGAGATCCCTATGGC				Xq11	PREDICTED: Rattus norvegicus cullin 4B (predicted) (Cul4b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660411-S	ILMN_285130	LOC360932	XR_009136.1	XR_009136.1		360932	109500561	XR_009136.1	LOC360932		ILMN_1375229	0000460358	S	4319	GAAGCTCTCAAGAGGTGGAGAGGGACTGCAAAGGTCAATCACGTGGCATC				14p11	PREDICTED: Rattus norvegicus similar to Probable phospholipid-transporting ATPase VD (ATPVD) (LOC360932), mRNA.					
Rattus norvegicus	RefSeq	GI_62653155-S	ILMN_60258	LOC503174	XM_578698.1	XM_578698.1		503174	62653155	XM_578698.1	LOC503174	XP_578698.1	ILMN_1365543	0002970053	S	448	CTGGGAAAGCGCGTAAGAGCACCTATTTGGCCTTGAGAAGTCGGGGACTC					PREDICTED: Rattus norvegicus similar to Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin cofactor A) (LOC503174), mRNA.					
Rattus norvegicus	RefSeq	GI_62641194-S	ILMN_267034	RGD1310509_PREDICTED	XM_001078870.1	XM_001078870.1		361634	109462755	XM_001078870.1	RGD1310509_predicted	XP_001078870.1	ILMN_1349296	0002940072	S	2783	GAAGTCCACGAGTGGCGCTTTCAGTGGCAACACAGAAGTCCCTGGACAGG				1q35	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0419 (predicted) (RGD1310509_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652190-S	ILMN_265066	RGD1560103_PREDICTED	XM_001081027.1	XM_001081027.1		500837	109482010	XM_001081027.1	RGD1560103_predicted	XP_001081027.1	ILMN_1355521	0003870008	S	3019	GAGGAGTCAGAACAGCTTCGAGGGTCCAAAAGAACAGGCGATGGCTTCCC				7q22	PREDICTED: Rattus norvegicus similar to Helicase (DNA) B (predicted) (RGD1560103_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576734-S	ILMN_285864	OLR602	NM_001000333.1	NM_001000333.1		295829	47576734	NM_001000333.1	Olr602	NP_001000333.1	ILMN_1363326	0002360008	S	779	GTTCTTCCACTTCAGACAACAGTGGGGATGCTGACAAAGTGGCCACAGTG	3	-	71732017-71732066	3q24	Rattus norvegicus olfactory receptor 602 (Olr602), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr602	Olr602
Rattus norvegicus	RefSeq	GI_62643967-S	ILMN_51239	LOC310586	XM_227368.3	XM_227368.3		310586	62643967	XM_227368.3	LOC310586	XP_227368.3	ILMN_1363651	0005720593	S	11681	TGGCAGCTATGGCCGTGAAGACTATGACTATGGGCAGACAGGGTACGGAC				2q34	PREDICTED: Rattus norvegicus similar to filaggrin (LOC310586), mRNA.					
Rattus norvegicus	RefSeq	GI_62641681-S	ILMN_270148	SAPS3_PREDICTED	XM_001067905.1	XM_001067905.1		309144	109463289	XM_001067905.1	Saps3_predicted	XP_001067905.1	ILMN_1364344	0002970594	S	4478	GGGTGTTGTGCTTGGGAAAGGACTTAGGTTTGCTTGTCTCGGGGAGAGGC				1q42	PREDICTED: Rattus norvegicus SAPS domain family, member 3 (predicted) (Saps3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14269571-S	ILMN_295084	HRSP12	NM_031714.1	NM_031714.1		65151	14269571	NM_031714.1	Hrsp12	NP_113902.1	ILMN_1356825	0002570181	S	433	ATCGCTGTCCAGGGGCCTTTCACCACAGCAGGACTGTAAGGAGCCATGCT	7	-	69930872-69930886:69930887-69930921	7q22	Rattus norvegicus heat-responsive protein 12 (Hrsp12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	PSP1; Psp	PSP1; Psp
Rattus norvegicus	RefSeq	GI_8394005-S	ILMN_60117	ZFP260	NM_017364.3	NM_017364.3		53982	82617576	NM_017364.3	Zfp260	NP_059060.1	ILMN_1357388	0004120411	S	1352	GTGGGAAAGCCTTCTGTCAGAGTTCGTCTCTAACCGTGCATATGAGGAGC	1	+	85142518-85142567	1q21	Rattus norvegicus zinc finger protein 260 (Zfp260), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Znf146; POZF-1; OZF; Znf260	Znf146; POZF-1; OZF; Znf260
Rattus norvegicus	RefSeq	GI_62639458-S	ILMN_295880	LOC687571	XM_001079194.1	XM_001079194.1		687571	109461674	XM_001079194.1	LOC687571	XP_001079194.1	ILMN_1373468	0002940129	S	422	TGGGACCTGGACCTAGTCATGCACCATGCAGATGTGCGCTTAGTCGCGCT					PREDICTED: Rattus norvegicus similar to cytochrome c oxidase, subunit VIb polypeptide 1 (LOC687571), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660627-S	ILMN_280149	RGD1305153_PREDICTED	XM_001063560.1	XM_001063560.1		289716	109500831	XM_001063560.1	RGD1305153_predicted	XP_001063560.1	ILMN_1366078	0002370372	S	1701	CGCCGGGCTCGCCTTGTCCTGCAAAGGGGTGAAGCAAAAAATTAGGGAAG				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921513E08 (predicted) (RGD1305153_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661140-S	ILMN_63150	RGD1306063_PREDICTED	XM_214137.3	XM_214137.3		289928	109501370	XM_214137.3	RGD1306063_predicted	XP_214137.1	ILMN_1360443	0000520563	S	810	GGAAACTGGATTACTGGGGTTGTGTGCTCCAGACAGACTTCTCCAAGCCC	15	-	14395676-14395725	15p16	PREDICTED: Rattus norvegicus similar to HT021 (predicted) (RGD1306063_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662275-S	ILMN_264656	RGD1559678_PREDICTED	XR_008307.1	XR_008307.1		498596	109503876	XR_008307.1	RGD1559678_predicted		ILMN_1365816	0002060497	S	1734	CTCTGTGCTAACCAAGTGACTGGAGATGTAGGGATCTGTGCATTCTATGC				16p14	PREDICTED: Rattus norvegicus similar to neuregulin-3 (predicted) (RGD1559678_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978788-S	ILMN_302193	SPARCL1	NM_012946.1	NM_012946.1		25434	6978788	NM_012946.1	Sparcl1	NP_037078.1	ILMN_1373875	0003140600	S	2284	CAGCCCTGCTTGCTTTAACCACTTCCGCGTAGGAGCCGCCATGACACTCT	14	+	6797199-6797248	14p22	Rattus norvegicus SPARC-like 1 (hevin) (Sparcl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Ecm2; Sc1	Ecm2; Sc1
Rattus norvegicus	RefSeq	GI_12018271-S	ILMN_292655	FGFBP1	NM_022603.1	NM_022603.1		64535	12018271	NM_022603.1	Fgfbp1	NP_072125.1	ILMN_1374648	0000780632	S	751	AGACATGTGGTATCAGAGCCCCACTGTTTGCTGGAAACTCCCCGGGTTCC	14	+	72243021-72243070	14q21	Rattus norvegicus fibroblast growth factor binding protein 1 (Fgfbp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IDA]	Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654462-S	ILMN_58226	RGD1305283_PREDICTED	XM_343501.3	XM_343501.3		363162	109484062	XM_343501.3	RGD1305283_predicted	XP_343502.2	ILMN_1355117	0001990369	S	453	GGCTCCAGAAGCTTCCCACAAGCATGTAGGCAAACAGTGAGTCAGACGTC	8	-	122988539-122988560:122988561-122988588	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010110K16 (predicted) (RGD1305283_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657980-S	ILMN_64648	LOC303889	XM_221419.3	XM_221419.3		303889	62657980	XM_221419.3	LOC303889	XP_221419.2	ILMN_2038911	0004570681	S	34	GATTGGCGAGCTGTCCCCGCAGAGTTCAGCCTTCAGTATGACATGGAGAA				11q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC303889), mRNA.					
Rattus norvegicus	RefSeq	GI_27544948-S	ILMN_273473	PRPG1	NM_172064.1	NM_172064.1		257652	27544948	NM_172064.1	Prpg1	NP_742061.1	ILMN_1355512	0000130273	S	411	AGGGAGGACACCAGCAGAGACCCCCTCAGCCTGGAAAACCACAGGACCCA	4	-	169555582-169555631	4q42	Rattus norvegicus proline-rich proteoglycan 1 (Prpg1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_34869377-S	ILMN_61012	LOC361014	XM_341289.2	XM_341289.2		361014	62661127	XM_341289.2	LOC361014	XP_341290.2	ILMN_1349186	0000450161	S	1917	CTTCGCTCTGAGATGGCTCAAGTCAACCTGCTGGGAGACAGAAATCTGCG				15p16	PREDICTED: Rattus norvegicus similar to peptide N-glycanase (LOC361014), mRNA.					
Rattus norvegicus	RefSeq	GI_62645898-S	ILMN_273599	RGD1561852_PREDICTED	XM_001081197.1	XM_001081197.1		499893	109470843	XM_001081197.1	RGD1561852_predicted	XP_001081197.1	ILMN_1369936	0004060605	S	645	CACAGACAGTGCTATGGCTGGGCGTGCTCTCCTTAGGTTTCACCCTGGTG				3q36	PREDICTED: Rattus norvegicus similar to Protein C20orf29 (predicted) (RGD1561852_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.24673	ILMN_160939	RN.24673	Rn.24673		Rn.24673		29529063	CB585046			ILMN_1530217	0004670112	S	274	GTTTATGAAATCCAAGCCAGAAATGCAAACAAAAACTCTTGAAAAGCAAA					AMGNNUC:NRHY5-00459-F4-A W Rat hypothalamus (10471) Rattus norvegicus cDNA clone nrhy5-00459-f4 5', mRNA					
Rattus norvegicus	RefSeq	GI_62663084-S	ILMN_56435	LOC290933	XM_237994.2	XM_237994.2		290933	62663084	XM_237994.2	LOC290933	XP_237994.1	ILMN_1350272	0001660538	S	267	GATTCCACCGATTGGACGAGCAGGCTGAGGAGGGCAAGCAGCCAGAAGAA					PREDICTED: Rattus norvegicus hypothetical LOC290933 (LOC290933), mRNA.					
Rattus norvegicus	RefSeq	GI_62657978-S	ILMN_277219	RGD1564641_PREDICTED	XR_008794.1	XR_008794.1		303891	109494487	XR_008794.1	RGD1564641_predicted		ILMN_1355919	0001940091	S	3447	AATGTCCCCATACGCCGAGTACCCCAAGAATCCTCGCTCACAGGAGTGGG				11q22	PREDICTED: Rattus norvegicus similar to Neurogenic locus notch homolog protein 2 precursor (Notch 2) (hN2) (predicted) (RGD1564641_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646501-S	ILMN_293262	CABLES2_PREDICTED	XM_001059501.1	XM_001059501.1		311703	109471525	XM_001059501.1	Cables2_predicted	XP_001059501.1	ILMN_1358118	0006450519	S	1232	TCCCGGAGAACCAAGTATTACCTCACTACAGACGCCTCACCCAGCAGTTC				3q43	PREDICTED: Rattus norvegicus Cdk5 and Abl enzyme substrate 2 (predicted) (Cables2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642825-S	ILMN_62929	BDP1_PREDICTED	XM_226738.4	XM_226738.4		294687	109464312	XM_226738.4	Bdp1_predicted	XP_226738.4	ILMN_1372427	0005670131	S	7308	TGGGCCAAAAGGAGCATCTGAAGAAGAGGTGACCACAGTCTCAGAGTTCG	2	-	31037960-31038009	2q12	PREDICTED: Rattus norvegicus B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted) (Bdp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656247-S	ILMN_300074	RGD1563963_PREDICTED	XR_009257.1	XR_009257.1		497927	109491015	XR_009257.1	RGD1563963_predicted		ILMN_1361406	0002260097	S	749	GAAGCCATCGTGGAGCTGAACCTGCCAACCGGCATTCCCATCGTCTACGT				10q24	PREDICTED: Rattus norvegicus similar to Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B) (predicted) (RGD1563963_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642994-S	ILMN_49102	LOC365686	XM_345161.2	XM_345161.2		365686	62642994	XM_345161.2	LOC365686	XP_345162.2	ILMN_1350027	0002340398	S	2082	GAGAGGGGACAGAAACGCTGCAGAGAGCCACATGCTGAGGAGCCAATGGA					PREDICTED: Rattus norvegicus similar to hypothetical protein C230069C04 (LOC365686), mRNA.					
Rattus norvegicus	RefSeq	GI_62666871	ILMN_286432	LOC681539	XM_001057302.1	XM_001057302.1		681539	109511812	XM_001057302.1	LOC681539	XP_001057302.1	ILMN_1649977	0000050348	S	286	GGCTTGCGATGAGTAGCAGATGTTGGGCAACTCGAATATCCAGAGGGATG					PREDICTED: Rattus norvegicus hypothetical protein LOC681539 (LOC681539), mRNA.					
Rattus norvegicus	RefSeq	GI_62641932-S	ILMN_65751	TRPM6_PREDICTED	XM_219747.4	XM_219747.4		293874	109459951	XM_219747.4	Trpm6_predicted	XP_219747.4	ILMN_1373709	0000730056	S	6370	TGCGTCAGCTGCCCACTTGGAGTAGAATGCTGTGTACTAAAGAACCAGGG	1	+	222502498-222502547	1q43	PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 6 (predicted) (Trpm6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664638-S	ILMN_52237	RGD1562987_PREDICTED	XM_574174.2	XM_574174.2		498886	109506795	XM_574174.2	RGD1562987_predicted	XP_574174.2	ILMN_1357253	0002260722	S	685	CCCGTGGGTTCTTGTACCTTGAGTGGGAGGAGTCTTAGCGTGACACAGGG	18	+	71876597-71876646	18q12.3	PREDICTED: Rattus norvegicus similar to cDNA sequence BC031181 (predicted) (RGD1562987_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34858700	ILMN_269394	MRPS26	NM_001013206.1	NM_001013206.1		362216	61557283	NM_001013206.1	Mrps26	NP_001013224.1	ILMN_1649944	0000540441	S	610	ACTGGGCGGTCACCAAAGAAGGGCAGGTGGTCAGGAACTGAGAACAGAGG	3	+	118182094-118182134:118182135-118182143	3q36	Rattus norvegicus mitochondrial ribosomal protein S26 (Mrps26), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_13928851-A	ILMN_290861	SH2B3	NM_031621.1	NM_031621.1		58838	13928851	NM_031621.1	Sh2b3	NP_113809.1	ILMN_1376327	0003710471	S	3199	GCACCAGCACCAAAGAGTTAGGTCAACTAACCTGCCTTGTCTTTACCAGC	12	+	35957954-35958003	12q16	Rattus norvegicus SH2B adaptor protein 3 (Sh2b3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence IEA]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646621-S	ILMN_270334	RGD1564823_PREDICTED	XM_001057904.1	XM_001057904.1		499966	109472889	XM_001057904.1	RGD1564823_predicted	XP_001057904.1	ILMN_1350742	0005290706	S	829	CTCCAGAGAGGATGAGGCCAAGAGCAGCCGGTTCGCACTAGTTTCACGAC				4q11	PREDICTED: Rattus norvegicus similar to DNA-repair protein XRCC2 (X-ray repair cross-complementing protein 2) (predicted) (RGD1564823_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648604-S	ILMN_283940	TOX_PREDICTED	XM_001063218.1	XM_001063218.1		362481	109476020	XM_001063218.1	Tox_predicted	XP_001063218.1	ILMN_1353852	0000610242	S	1500	CGCCATGCATCCGAGCCTCCCCAGAAACATAGCACCTAAGCCCAATAACC				5q13	PREDICTED: Rattus norvegicus thymocyte selection-associated HMG box gene (predicted) (Tox_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576446-S	ILMN_280108	OLR1591	NM_001000912.1	NM_001000912.1		405223	47576446	NM_001000912.1	Olr1591	NP_001000912.1	ILMN_1355614	0002810575	S	892	GAGGCCATTAAGAAAATGCTCTGTTCTCAAAAAGTTCACCATCTCTGGTC	13	+	89874203-89874252	13q24	Rattus norvegicus olfactory receptor 1591 (Olr1591), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1591	Olr1591
Rattus norvegicus	RefSeq	GI_62650214-S	ILMN_272028	LOC313045	XM_001060201.1	XM_001060201.1		313045	109477284	XM_001060201.1	LOC313045	XP_001060201.1	ILMN_1355823	0006980487	S	1756	CAGAGCCATGCCAACGGCAAGAACGTCCAGCCACTGCGGATCAACACGGT					PREDICTED: Rattus norvegicus similar to tripartite motif-containing 62 (LOC313045), mRNA.					
Rattus norvegicus	RefSeq	GI_19745163-S	ILMN_273720	PRKCDBP	NM_134449.1	NM_134449.1		85332	19745163	NM_134449.1	Prkcdbp	NP_604444.1	ILMN_1356716	0001660632	S	761	GGAGCCAGAACCTCCTCAGCCTACCAAGGAAGATCCTGAGAGACCTGTGC	1	-	163213160-163213209	1q33	Rattus norvegicus protein kinase C, delta binding protein (Prkcdbp), mRNA.		Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence NAS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with protein kinase C [goid 5080] [evidence IDA]	DIG-2; Srbc	DIG-2; Srbc
Rattus norvegicus	RefSeq	GI_62660601-S	ILMN_62612	LOC497697	XM_579609.1	XM_579609.1		497697	62660601	XM_579609.1	LOC497697	XP_579609.1	ILMN_1373847	0005890136	S	2155	TGCAGAAGGCCAAGGAGTGGGAGCTGAAGAATGGAACATAGAGGGAGCCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_080900 (LOC497697), mRNA.					
Rattus norvegicus	RefSeq	GI_62642215-S	ILMN_53987	MARCH5_PREDICTED	XM_215286.4	XM_215286.4		294079	109460089	XM_215286.4	March5_predicted	XP_215286.4	ILMN_1366288	0001780435	S	2830	GATGCTGTGGATTGAACCCAGGGCCTTATGCACGATAGGTCTACACTACC	1	+	241496481-241496530	1q53	PREDICTED: Rattus norvegicus membrane-associated ring finger (C3HC4) 5 (predicted) (March5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526817-S	ILMN_271966	TMEM204	NM_001009620.1	NM_001009620.1		287129	57526817	NM_001009620.1	Tmem204	NP_001009620.1	ILMN_1367558	0006200040	S	1488	CAAAGGTGGAGACTAGAAGCTGAGGCACGGAAGGAGGCAGTGTGGGCATC	10	-	14304795-14304844	10q12	Rattus norvegicus transmembrane protein 204 (Tmem204), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_16758047-S	ILMN_302962	AGER	NM_053336.1	NM_053336.1		81722	16758047	NM_053336.1	Ager	NP_445788.1	ILMN_1358424	0000610035	S	1105	TAGCCGCTCTGCTCATTGGGGCCATCCTGTGGCGAAAACGACAACCCAGA	20	-	4250964-4251013	20p12	Rattus norvegicus advanced glycosylation end product-specific receptor (Ager), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IMP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IPI]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with advanced glycation end-products to initiate a change in cell activity [goid 50785] [evidence IDA]	RAGE	RAGE
Rattus norvegicus	RefSeq	GI_34858823-S	ILMN_281658	BFSP1	XM_001053697.1	XM_001053697.1		25394	109470910	XM_001053697.1	Bfsp1	XP_001053697.1	ILMN_1349456	0006180136	S	1642	AAGGCTTGAAGGAAGAGAGTGTCTGGGGCCAGTAGGGGAAGTGCTTTGAG				3q41	PREDICTED: Rattus norvegicus beaded filament structural protein 1 (Bfsp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence NAS]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758797-S	ILMN_289575	CEACAM9	NM_053919.1	NM_053919.1		116711	16758797	NM_053919.1	Ceacam9	NP_446371.1	ILMN_1362380	0002230142	S	708	GTGAGTGACCTTGCCTCTCATCGTGTGCCGCAGTGGGGAGACTTGTTTGT	1	+	77059711-77059760	1q21	Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule 9 (Ceacam9), mRNA.					
Rattus norvegicus	RefSeq	GI_17978450-S	ILMN_265165	PFKFB2	NM_001033964.1	NM_001033964.1		24640	77020257	NM_001033964.1	Pfkfb2	NP_001029136.1	ILMN_1373508	0000450364	S	1762	CCCTCAATGGCATCCCTCACTTTGCTCTCCTGATGTGAGGCTGAGGCCAG	13	-	43627377-43627394:43627395-43627426	13q13	Rattus norvegicus 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (Pfkfb2), transcript variant 2, mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence TAS]; The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence TAS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence ISS]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence TAS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence IEA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RH2K	RH2K
Rattus norvegicus	RefSeq	GI_62662069-S	ILMN_59831	LOC502034	XM_580234.1	XM_580234.1		502034	62662069	XM_580234.1	LOC502034	XP_580234.1	ILMN_1356436	0004050398	S	480	TGCGGCCAAGCAGCAGGGCATCCACGGGTTCTTCTCCAAGATTGGTGGAT					PREDICTED: Rattus norvegicus LOC502034 (LOC502034), mRNA.					
Rattus norvegicus	RefSeq	GI_62644874-S	ILMN_279742	IL1F6_PREDICTED	XM_001077031.1	XM_001077031.1		296541	109469506	XM_001077031.1	Il1f6_predicted	XP_001077031.1	ILMN_1374262	0001090092	S	105	CCCAAGGAAAGAGCAAACGGTTCCAGTCACTATCACCTTACTCCCATGCC				3p13	PREDICTED: Rattus norvegicus interleukin 1 family, member 6 (predicted) (Il1f6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855534-S	ILMN_283410	RGD1565516_PREDICTED	XR_007823.1	XR_007823.1		294952	109466408	XR_007823.1	RGD1565516_predicted		ILMN_1364185	0006040670	S	218	ATGCTCGTGTTTCAGTACCAGACAGCATTGGTCCCGAGAGCATACTAAGT				2q24	PREDICTED: Rattus norvegicus similar to heterogeneous nuclear ribonucleoprotein K (predicted) (RGD1565516_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577520-S	ILMN_263644	OLR499	NM_001000931.1	NM_001000931.1		405251	47577520	NM_001000931.1	Olr499	NP_001000931.1	ILMN_1355826	0006510541	S	421	TGCTGGGTGCTTGTGGTAATCCCTTATCTTTACTGTACACTTGTTGCTCT	3	-	69585165-69585214	3q24	Rattus norvegicus olfactory receptor 499 (Olr499), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr499	Olr499
Rattus norvegicus	RefSeq	GI_62652957-S	ILMN_49701	IRAK4_PREDICTED	XM_217026.4	XM_217026.4		300177	109481214	XM_217026.4	Irak4_predicted	XP_217026.4	ILMN_1360142	0005910121	S	2408	CAGCCCTGTGCTTTACAGAGATCCTAGGGTTACTGGGGAGTGGAGGAGGT	7	+	133081127-133081176	7q35	PREDICTED: Rattus norvegicus interleukin-1 receptor-associated kinase 4 (predicted) (Irak4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392992-S	ILMN_270623	BMP3	NM_017105.1	NM_017105.1		25667	8392992	NM_017105.1	Bmp3	NP_058801.1	ILMN_1375205	0004230673	S	1825	GAAGCCATCAAATCACGCCACCATCCAGAGCATAGTGAGAGCCGTGGGGG	14	-	12065918-12065967	14p22	Rattus norvegicus bone morphogenetic protein 3 (Bmp3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	PBMP3	PBMP3
Rattus norvegicus	RefSeq	GI_46485428-S	ILMN_282165	GLO1	NM_207594.1	NM_207594.1		294320	46485428	NM_207594.1	Glo1	NP_997477.1	ILMN_1355977	0001940048	S	697	GCACCAGAAGTGTTGGGGGACTGATGGGTCTTTGCTCCAGTTCAAGCCAT	20	-	8901287-8901336	20p12	Rattus norvegicus glyoxalase 1 (Glo1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The chemical reactions and pathways involving methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid [goid 9438] [evidence IDA]	Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal [goid 4462] [evidence ISS]; Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal [goid 4462] [evidence IDA]; Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal [goid 4462] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643067	ILMN_265014	RGD1564125_PREDICTED	XM_001060780.1	XM_001060780.1		310166	109466205	XM_001060780.1	RGD1564125_predicted	XP_001060780.1	ILMN_1650480	0002970136	S	716	CGTTGTCTCTGGTTGCAACCATATCCGGAAACACGTTTAACAAAGTGGCC				2q21	PREDICTED: Rattus norvegicus similar to Cln5 protein (predicted) (RGD1564125_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394380-S	ILMN_291551	SLC23A1	NM_017315.1	NM_017315.1		50621	8394380	NM_017315.1	Slc23a1	NP_059011.1	ILMN_1375024	0004200184	S	1969	GACAGCCCAAGTCTCTAAGTCCTCGGGAGACCTGTATTTGCACTGCTCTG	18	-	28239212-28239261	18p11	Rattus norvegicus solute carrier family 23 (nucleobase transporters), member 1 (Slc23a1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IDA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ascorbate(out) + Na+(out) = ascorbate(in) + Na+(in) [goid 8520] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	SVCT1	SVCT1
Rattus norvegicus	RefSeq	GI_27465524-S	ILMN_62633	MX1	NM_173096.2	NM_173096.2		24575	71534286	NM_173096.2	Mx1	NP_775119.2	ILMN_1373648	0001570132	S	3050	GCAAACCAACGCTCAGTTGCTCGTCTCCCAGTGTTTTGTGGGGCCGTATT	11	-	37438682-37438731	11q12	Rattus norvegicus myxovirus (influenza virus) resistance 1 (Mx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	IFI78	IFI78
Rattus norvegicus	RefSeq	GI_62639476-S	ILMN_57007	LOC502324	XM_577789.1	XM_577789.1		502324	62639476	XM_577789.1	LOC502324	XP_577789.1	ILMN_1368147	0002260156	S	262	AGAACCTCTGGACAATCGTGTTGATTTTTGGGGGGACTGTTGGGGGCCTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1600014C10 (LOC502324), mRNA.					
Rattus norvegicus	RefSeq	GI_62642334-S	ILMN_59183	LOC309378	XM_219889.3	XM_219889.3		309378	62642334	XM_219889.3	LOC309378	XP_219889.3	ILMN_1363157	0003390487	S	854	ATGTGAGGCGCAGAGTTGTCTACCCAGCAGGCTCCTTGAGGATGTGGCTG				1q54	PREDICTED: Rattus norvegicus similar to golgi autoantigen, golgin subfamily a, 7 (LOC309378), mRNA.					
Rattus norvegicus	RefSeq	GI_62649584-S	ILMN_262818	RGD1310174_PREDICTED	XM_001054640.1	XM_001054640.1		298504	109477173	XM_001054640.1	RGD1310174_predicted	XP_001054640.1	ILMN_1360239	0003990441	S	1869	GTCAAGACAGGGACCAAGGACTGGAGGGTGAGCAGCCCAGGACATCTGTG				5q36	PREDICTED: Rattus norvegicus hypothetical LOC298504 (predicted) (RGD1310174_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652540-S	ILMN_51260	LOC497823	XM_579623.1	XM_579623.1		497823	62652540	XM_579623.1	LOC497823	XP_579623.1	ILMN_1366270	0002350086	S	3762	GCAGTCCAACCTTCCTGGATGGGGTAGGTGAGCCACGTCTTGCAAAGGAG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133522 (LOC497823), mRNA.					
Rattus norvegicus	RefSeq	GI_62664975	ILMN_285460	LOC685053	XM_001062073.1	XM_001062073.1		685053	109507870	XM_001062073.1	LOC685053	XP_001062073.1	ILMN_1651189	0003800671	S	609	GTGCAAGAGAGCTGGAATTGGACACACACCAGTAAGAGAGCATGCTGAGG	19	+	23525288-23525337	19q11	PREDICTED: Rattus norvegicus hypothetical protein LOC685053 (LOC685053), mRNA.					
Rattus norvegicus	RefSeq	GI_57012415-S	ILMN_294932	RT1-CE13	NM_001008836.1	NM_001008836.1		414790	57012415	NM_001008836.1	RT1-CE13	NP_001008836.1	ILMN_1360781	0002630086	S	991	ATGAAGTGGAGGAGAAACACAGGAGGAACAGGAGGAGACTACACCCCTGC	20|NW_047606.1	+	91951-91972:92150-92177		Rattus norvegicus RT1 class I, CE13 (RT1-CE13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62655975-S	ILMN_286451	LOC303059	NM_001037773.1	NM_001037773.1		303059	83649720	NM_001037773.1	LOC303059	NP_001032862.1	ILMN_1351363	0000580092	S	537	CGCAGGACTTGTGCTTGGCATATCGGGACTCGTTGCAGGCCCACCGCTCA	10	+	28682511-28682560	10q21	Rattus norvegicus similar to novel protein (LOC303059), mRNA.				MGC116253	MGC116253
Rattus norvegicus	RefSeq	GI_47577890-S	ILMN_268007	OLR1163	NM_001000869.1	NM_001000869.1		405166	47577890	NM_001000869.1	Olr1163	NP_001000869.1	ILMN_1349696	0000610102	S	384	CCCACTTAACTACACAGTCATCATGAACCCTCGAATCTGTGGCCTTCTGG	8	-	18352274-18352323	8q13	Rattus norvegicus olfactory receptor 1163 (Olr1163), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1163	Olr1163
Rattus norvegicus	RefSeq	GI_62661866-S	ILMN_65358	LOC290078	XM_224033.3	XM_224033.3		290078	62661866	XM_224033.3	LOC290078	XP_224033.3	ILMN_1372026	0003710593	S	997	TACAGTGTCTGAGGGTGAGAGGAGATAATGTCCAGCAGAGTCCTTCAGCT				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC290078), mRNA.					
Rattus norvegicus	RefSeq	GI_62642209-S	ILMN_53819	RGD1560326_PREDICTED	XM_574660.2	XM_574660.2		499349	109460083	XM_574660.2	RGD1560326_predicted	XP_574660.2	ILMN_1369979	0004540020	S	621	CAGCCCGAAAAGAAGCCCTTGCTGGTGAAGTCCAACTCAGGCGGGAGGAA	1	-	241188986-241189035	1q53	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610306H15 (predicted) (RGD1560326_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981417-S	ILMN_278103	PRPS2	NM_012634.1	NM_012634.1		24689	6981417	NM_012634.1	Prps2	NP_036766.1	ILMN_1358229	0002810040	S	2475	TAGTGAAGTGTGGAGGTCTGTGCGGACCACATGTTTAAGGCCAGCCTGGG	X	+	47315066-47315115	Xq21	Rattus norvegicus phosphoribosyl pyrophosphate synthetase 2 (Prps2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways resulting in the formation of AMP, adenosine monophosphate [goid 6167] [evidence IDA]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9156] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IDA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]; The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar [goid 19693] [evidence IDA]; The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar [goid 19693] [evidence IDA]; The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells [goid 44249] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IDA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62717722-S	ILMN_270282	LOC367360	XR_009117.1	XR_009117.1		367360	109515702	XR_009117.1	LOC367360		ILMN_1373422	0002690427	S	715	CTAAGCCTTCCATGTACTTCATCAAGTTTGATGGCGACGTCCACATCCAC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367360), mRNA.					
Rattus norvegicus	RefSeq	GI_62667118-S	ILMN_280191	ITM2A	NM_001025712.1	NM_001025712.1		317218	71043803	NM_001025712.1	Itm2a	NP_001020883.1	ILMN_1366687	0001090097	S	1482	GTGAAATCCACAGAACTGTACGGGTGCTGAATGCTGTAAGGAGCTCTGGT	X	-	95637943-95637992	Xq31	Rattus norvegicus integral membrane protein 2A (Itm2a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]			MGC116343	MGC116343
Rattus norvegicus	RefSeq	GI_25282430-S	ILMN_265366	EAF2	NM_172047.1	NM_172047.1		266787	25282430	NM_172047.1	Eaf2	NP_742044.1	ILMN_1359394	0004010577	S	734	ATCCTCTCCTTCCGGTCCAAGGAGGTACAGCTCAGAGCACCCCAGCGTAT	11	+	65802429-65802478	11q22	Rattus norvegicus ELL associated factor 2 (Eaf2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]	Traits	Traits
Rattus norvegicus	RefSeq	GI_62655285-S	ILMN_266546	RGD1310230	NM_001039015.1	NM_001039015.1		301563	84781649	NM_001039015.1	RGD1310230	NP_001034104.1	ILMN_1371689	0000770288	S	920	GCAGAATGCAGGGAAGGACCTGTCTGTAGAGTGGAGAGCTGACCTGTCGC	9	+	82070576-82070625	9q34	Rattus norvegicus similar to RIKEN cDNA 5230400G24 (RGD1310230), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC112646	MGC112646
Rattus norvegicus	RefSeq	GI_27151741-S	ILMN_271864	PIGR	NM_012723.1	NM_012723.1		25046	27151741	NM_012723.1	Pigr	NP_036855.1	ILMN_1367822	0002260551	S	2938	GTCCTGCAGTCTAAGGCATACCCAAGCCATAAGGGCACCACGAGACTCAG				13q13	Rattus norvegicus polymeric immunoglobulin receptor (Pigr), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RNPIGR2; pIgA-R	RNPIGR2; pIgA-R
Rattus norvegicus	RefSeq	GI_62667435-S	ILMN_62533	RGD1564845_PREDICTED	XM_343831.3	XM_343831.3		363507	109511252	XM_343831.3	RGD1564845_predicted	XP_343832.3	ILMN_1362120	0005080338	S	961	GGAAGCTGAACCTGAGTGATGGGGATGTAATTACAGGGTTAGCTGGGAGG	X	+	140984121-140984170	Xq36	PREDICTED: Rattus norvegicus similar to Xlr-like (predicted) (RGD1564845_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656647-S	ILMN_61356	LOC360578	XM_340858.2	XM_340858.2		360578	62656647	XM_340858.2	LOC360578	XP_340859.2	ILMN_1357181	0002060347	S	162	GTTGAGGAAAATGGGATTTGTGCCTTTACGGTCCAGTTGTCCGGGGAGAG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC360578), mRNA.					
Rattus norvegicus	RefSeq	GI_62652370	ILMN_65858	RGD1566279_PREDICTED	XM_576263.2	XM_576263.2		500864	109480727	XM_576263.2	RGD1566279_predicted	XP_576263.2	ILMN_1650802	0003990176	S	1141	CCCAACACTGTGGCAGCCCGGGAGATGGAACGCCTAGAAAAAGAGAGTGC	7	-	79611748-79611797	7q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230382K22 gene (predicted) (RGD1566279_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577640	ILMN_296709	OLR651	NM_001000341.1	NM_001000341.1		295858	47577640	NM_001000341.1	Olr651	NP_001000341.1	ILMN_1650484	0005570239	S	422	TGCTGGTGGCCATAGTCTGTGGGGGATCCTGTGTTCATTCTTTAGTACAA	3	-	72730390-72730439	3q24	Rattus norvegicus olfactory receptor 651 (Olr651), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr651	Olr651
Rattus norvegicus	RefSeq	GI_33285446-S	ILMN_282744	GJA1	NM_012567.2	NM_012567.2		24392	33285446	NM_012567.2	Gja1	NP_036699.1	ILMN_1355543	0000460592	S	3003	GTGTTTGACATTCCACGTTAAACTGCTGTCGTGTTCGGCTTCGTAGCATG	20	+	35422130-35422179	20q11	Rattus norvegicus gap junction protein, alpha 1 (Gja1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IDA]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IMP]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence IDA]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence IDA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence TAS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence ISS]; The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence EXP]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence IEA]; The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2070] [evidence ISS]; The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2070] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IMP]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IMP]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IDA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; The directed movement of substances, into, out of or within a cell, either in a vascular tissue or in the vascular membrane [goid 10232] [evidence IMP]; The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells [goid 15867] [evidence IMP]; Assembly of gap junctions, which are found in most animal tissues, and serve as direct connections between the cytoplasms of adjacent cells. They provide open channels through the plasma membrane, allowing ions and small molecules (less than approximately a thousand daltons) to diffuse freely between neighboring cells, but preventing the passage of proteins and nucleic acids [goid 16264] [evidence TAS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage [goid 43403] [evidence ISS]; The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage [goid 43403] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 45732] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of striated muscle development [goid 45844] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of striated muscle development [goid 45844] [evidence IEA]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEA]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IDA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IMP]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence TAS]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IDA]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence ISS]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IDA]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]	Cx43; MGC93610	Cx43; MGC93610
Rattus norvegicus	RefSeq	GI_47577528-S	ILMN_265847	OLR500	NM_001000680.1	NM_001000680.1		404884	47577528	NM_001000680.1	Olr500	NP_001000680.1	ILMN_1351162	0001240053	S	692	GTATTAATTCTGCTGAGGGCAAACGGAAGGCTTTCTCTACATGTGGGTCC	3	-	69603587-69603636	3q24	Rattus norvegicus olfactory receptor 500 (Olr500), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr500	Olr500
Rattus norvegicus	RefSeq	GI_62718840-S	ILMN_65932	LOC363434	XM_343756.3	XM_343756.3		363434	109514027	XM_343756.3	LOC363434	XP_343757.2	ILMN_1367908	0006940594	S	1035	TTACCATCACTAACTGCTTTTCTACTATGTCTCCAAGGCAAGCCACAGGC	Un|NW_047996.1	-	44289-44338		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC363434), mRNA.					
Rattus norvegicus	RefSeq	GI_62638862-S	ILMN_47803	RGD1565545_PREDICTED	XM_218197.3	XM_218197.3		308337	109458103	XM_218197.3	RGD1565545_predicted	XP_218197.3	ILMN_1368645	0004050056	S	895	AACTCCTCCAACTTCCGCAAGCACCAGCGTACCCATTTCCATGGGCCAGG	1	+	67546883-67546932	1q12	PREDICTED: Rattus norvegicus similar to zinc finger protein ZFP (predicted) (RGD1565545_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656519-S	ILMN_53945	GARNL4_PREDICTED	XM_220692.4	XM_220692.4		303298	109488513	XM_220692.4	Garnl4_predicted	XP_220692.4	ILMN_1365780	0004050092	S	2371	GAGCCGGAGTCCCACAGATGCCAAAAGCAGAAACTCCCCGAGGTCAAACC	10	-	61682546-61682579:61685960-61685975	10q24	PREDICTED: Rattus norvegicus GTPase activating RANGAP domain-like 4 (predicted) (Garnl4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865469-A	ILMN_297778	HEXB	NM_001011946.1	NM_001011946.1		294673	58865469	NM_001011946.1	Hexb	NP_001011946.1	ILMN_1376748	0000460411	S	1597	CAGTGCACCGCTGTAGAATGGTCAGCCGCGGAATAGCTGCACAACCTCTC	2	-	27649422-27649446:27649853-27649877	2q12	Rattus norvegicus hexosaminidase B (Hexb), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence IDA]; The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide [goid 6687] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues [goid 6689] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; The union of male and female gametes to form a zygote [goid 7338] [evidence ISS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The actions or reactions of a male, for the purpose of attracting a sexual partner [goid 8049] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9313] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties [goid 30203] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances [goid 31323] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification [goid 44267] [evidence ISS]; The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell [goid 48477] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]	Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence ISS]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Catalysis of the cleavage of hexosamine or N-acetylhexosamine residues (e.g. N-acetylglucosamine) residues from gangliosides or other glycoside oligosaccharides [goid 15929] [evidence IDA]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-glucosamine residues in N-acetyl-beta-D-glucosaminides [goid 16231] [evidence IDA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	Rn.3021	ILMN_297778	HEXB	NM_001011946.1	NM_001011946.1		294673	58865469	NM_001011946.1	Hexb	NP_001011946.1	ILMN_1530345	0006420487	S	1637	ACAACCTCTCTTTACTGGATATTGTAACTACGAGAATAAAATGGAAAAGT	2	-	27649382-27649431	2q12	Rattus norvegicus hexosaminidase B (Hexb), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein [goid 6044] [evidence IDA]; The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide [goid 6687] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues [goid 6689] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; The union of male and female gametes to form a zygote [goid 7338] [evidence ISS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The actions or reactions of a male, for the purpose of attracting a sexual partner [goid 8049] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9313] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties [goid 30203] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances [goid 31323] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification [goid 44267] [evidence ISS]; The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell [goid 48477] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]	Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence ISS]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Catalysis of the cleavage of hexosamine or N-acetylhexosamine residues (e.g. N-acetylglucosamine) residues from gangliosides or other glycoside oligosaccharides [goid 15929] [evidence IDA]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-glucosamine residues in N-acetyl-beta-D-glucosaminides [goid 16231] [evidence IDA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27719514-S	ILMN_266634	MBD3L1_PREDICTED	XM_001075394.1	XM_001075394.1		300389	109484300	XM_001075394.1	Mbd3l1_predicted	XP_001075394.1	ILMN_1364464	0003990369	S	188	CCTGCTGGCAAAAGAGACTTCAAGGACTCCAGGCCTACAGCAGTGCGGGA				8q12	PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 3-like 1 (predicted) (Mbd3l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880663-S	ILMN_295709	RGD1562980_PREDICTED	XM_001063038.1	XM_001063038.1		302448	109511913	XM_001063038.1	RGD1562980_predicted	XP_001063038.1	ILMN_1373219	0006100270	S	2490	GGGTCAGTCACATTGTAGCAGCCTTGTTTCTTTGGTGGATTACCCATATG				Xq22	PREDICTED: Rattus norvegicus similar to KIAA1387 protein (predicted) (RGD1562980_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648170	ILMN_293687	CD27	NM_001024335.1	NM_001024335.1		500318	66730456	NM_001024335.1	Cd27	NP_001019506.1	ILMN_1649775	0000940161	S	780	GGAAGACTACCGGAAACCTGAGCCTGCTTCCTACCCTTGATGCGGTGCTG	4	-	161352544-161352554:161352555-161352593	4q42	Rattus norvegicus CD27 molecule (Cd27), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence IEA]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62640999-S	ILMN_64697	LOC497736	XM_579656.1	XM_579656.1		497736	62640999	XM_579656.1	LOC497736	XP_579656.1	ILMN_1362229	0005290309	S	2378	ACCCATTGGGGGTTTGGCATGGGGACGAGAATGGTACTACATCCCTCCAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_138849 (LOC497736), mRNA.					
Rattus norvegicus	RefSeq	GI_62664524-S	ILMN_275771	RGD1564677_PREDICTED	XR_008141.1	XR_008141.1		307376	109507460	XR_008141.1	RGD1564677_predicted		ILMN_1349276	0003440021	S	1313	TAGGCACAGGGGGCTCCTCGTCCACCTCCGGCACTTGTACCAAAGCATGA				18q12.1	PREDICTED: Rattus norvegicus similar to transcription factor ONECUT2 (predicted) (RGD1564677_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660888-S	ILMN_60640	BCL11A_PREDICTED	XM_223693.3	XM_223693.3		305589	62660888	XM_223693.3	Bcl11a_predicted	XP_223693.3	ILMN_1365365	0001170601	S	3041	GCTTGAACCTGTTACCTCAGAAACTCATAGGGTGGGCAGAAGGACCAGAC				14q22	PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 11A (zinc finger protein) (predicted) (Bcl11a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654130	ILMN_64728	PAQR9_PREDICTED	XM_236503.4	XM_236503.4		315904	109483796	XM_236503.4	Paqr9_predicted	XP_236503.4	ILMN_1651081	0006860368	S	817	ATCCAGCCGGGTCTCTTTGACATCATCGGCCACAGCCACCAGCTCTTCCA	8	+	100651461-100651510	8q31	PREDICTED: Rattus norvegicus progestin and adipoQ receptor family member IX (predicted) (Paqr9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928863-S	ILMN_269442	NR1H3	NM_031627.1	NM_031627.1		58852	13928863	NM_031627.1	Nr1h3	NP_113815.1	ILMN_1352599	0002470450	S	1409	GACTGCTTCCTAGAGGTGGAGCAGACTGAGGAGGGCAAACATTCCTGGGC	3	-	75542356-75542405	3q24	Rattus norvegicus nuclear receptor subfamily 1, group H, member 3 (Nr1h3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence ISS]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The chemical reactions and pathways involving lipids, as carried out by individual cells [goid 44255] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence TAS]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence ISS]; Combining with ecdysteroid hormone to initiate a change in cell activity [goid 4884] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a retinoid X receptor [goid 46965] [evidence IPI]; Combining with ecdysteroid hormone to initiate a change in cell activity [goid 4884] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	LXRalpha	LXRalpha
Rattus norvegicus	RefSeq	GI_13928805-S	ILMN_301070	P2RX4	NM_031594.1	NM_031594.1		29659	13928805	NM_031594.1	P2rx4	NP_113782.1	ILMN_1366191	0002760735	S	1780	AGGCCCAGGCTCTGTCCACGCACTTTATTTCTAAGGAAGGAGGCTCTCTC	12	-	34944043-34944092	12q16	Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel 4 (P2rx4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IDA]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 10524] [evidence ISS]; Any process that decreases the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division [goid 10614] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface [goid 34405] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; Any process that modulates the frequency, rate or extent of cardiac muscle contraction [goid 55117] [evidence ISS]; The process whereby the extent of cardiac muscle contraction is reduced [goid 55119] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]	Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence IDA]; Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IDA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_6981309-S	ILMN_288854	OPRM1	NM_013071.1	NM_013071.1		25601	6981309	NM_013071.1	Oprm1	NP_037203.1	ILMN_1355897	0004070324	S	2059	GGGGTTAGGAGAGGGGCTGTTTTTTCCTAATTCCCACCATGTCCTCTAAG	1	+	37588517-37588566	1p11	Rattus norvegicus opioid receptor, mu 1 (Oprm1), transcript variant 1, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7191] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The series of molecular signals generated as a consequence of an opioid receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 31635] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4988] [evidence TAS];  [goid 4988] [evidence IDA];  [goid 4988] [evidence IEA];  [goid 4988] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]	MORA	MORA
Rattus norvegicus	RefSeq	GI_62654925-S	ILMN_63047	RGD1309266_PREDICTED	XM_237056.4	XM_237056.4		316335	109485939	XM_237056.4	RGD1309266_predicted	XP_237056.4	ILMN_1361843	0003440139	S	5699	GGATGACTTGGGACAGACCTACAACCCCTGGCGGATATGGAGTCCTACGA	9	-	35720617-35720666	9q21	PREDICTED: Rattus norvegicus similar to RW1 protein (predicted) (RGD1309266_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641811-S	ILMN_59784	TRPT1_PREDICTED	XM_219539.4	XM_219539.4		293704	109459796	XM_219539.4	Trpt1_predicted	XP_219539.4	ILMN_1363640	0003360008	S	666	AAGGAAGGACACACATCCACTTAGCCTCGGGGTTGCCTGGGGACTCTGGT	1	+	209672168-209672217	1q43	PREDICTED: Rattus norvegicus tRNA phosphotransferase 1 (predicted) (Trpt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718425-S	ILMN_59364	LOC367548	XM_578887.1	XM_578887.1		367548	62718425	XM_578887.1	LOC367548	XP_578887.1	ILMN_1357512	0004480735	S	284	CACACAGAAGCCTGATGATGCCGGTAAGGTCAAGTTGGATCCCAATGAGA					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC367548), mRNA.					
Rattus norvegicus	RefSeq	GI_62652290-S	ILMN_62065	LOC500850	XM_576243.1	XM_576243.1		500850	62652290	XM_576243.1	LOC500850	XP_576243.1	ILMN_1370900	0000070600	S	674	TATCCTGAGCAGACATTCCCCAGAGCCAGGAGGCAGATGCGAAGATCCAC					PREDICTED: Rattus norvegicus similar to Retinol dehydrogenase type I (RODH I) (LOC500850), mRNA.					
Rattus norvegicus	RefSeq	GI_47577808-S	ILMN_278647	OLR1228	NM_001000964.1	NM_001000964.1		405316	47577808	NM_001000964.1	Olr1228	NP_001000964.1	ILMN_1367204	0000630411	S	462	AGGGTTTTCTAGTGCCTCGGTCCTTGCTGGCTTAATGATTAGGCTTAACT	8	+	40448220-40448269	8q22	Rattus norvegicus olfactory receptor 1228 (Olr1228), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1228	Olr1228
Rattus norvegicus	RefSeq	GI_62651819-S	ILMN_61259	RGD1560314_PREDICTED	XM_347081.3	XM_347081.3		362846	109480315	XM_347081.3	RGD1560314_predicted	XP_347082.2	ILMN_1363009	0003870324	S	718	CATGAGAGCACAGAAGGCAGAGAGGAACTCAACTGGACCGTGCTAAGGAG	7	-	13747859-13747908	7q11	PREDICTED: Rattus norvegicus RGD1560314 (predicted) (RGD1560314_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650054-S	ILMN_267832	SPSB1_PREDICTED	XM_001075317.1	XM_001075317.1		313722	109477725	XM_001075317.1	Spsb1_predicted	XP_001075317.1	ILMN_1367615	0003360504	S	2924	GCCGTCCCGGCACCATCACCGTAAAGCCTTGTGGCATGTATAGTTCTGAA				5q36	PREDICTED: Rattus norvegicus splA/ryanodine receptor domain and SOCS box containing 1 (predicted) (Spsb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665523-S	ILMN_53341	LOC365028	XM_344788.3	XM_344788.3		365028	109508312	XM_344788.3	LOC365028	XP_344789.3	ILMN_1364726	0003060619	S	2141	CCAGCGAGTCAGTCTGGGAACAGCACAGAAGTGTGGCCTACCTGAGAGTT	19|NW_047542.1	-	72842-72891		PREDICTED: Rattus norvegicus similar to pecanex-like 2 isoform 1 (LOC365028), mRNA.					
Rattus norvegicus	RefSeq	GI_62663566-S	ILMN_270261	THEM2_PREDICTED	XM_001070460.1	XM_001070460.1		291135	109505772	XM_001070460.1	Them2_predicted	XP_001070460.1	ILMN_1350154	0000780605	S	643	TCTGGGAAACTGAGAACATCGGGATGACCTGAAGACGCCCAACAATGCCG				17p11	PREDICTED: Rattus norvegicus thioesterase superfamily member 2 (predicted) (Them2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657650-S	ILMN_60822	LOC498062	XM_573260.1	XM_573260.1		498062	62657650	XM_573260.1	LOC498062	XP_573260.1	ILMN_1370087	0004070014	S	571	AGACCCTGATCCTTTGCCTGGCCTTTGCGGGAGTGAAAATGTACCAGAGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1190017O12 (LOC498062), mRNA.					
Rattus norvegicus	RefSeq	GI_62638930-S	ILMN_51044	ZFP499_PREDICTED	XM_238764.4	XM_238764.4		308366	109458191	XM_238764.4	Zfp499_predicted	XP_238764.2	ILMN_1374681	0000670601	S	1321	CAACCCGCCTATGAGTGTAGCCACTGCCGCAAGACGTTCAGCTCTCGAAA	1	+	72914909-72914958	1q21	PREDICTED: Rattus norvegicus zinc finger protein 499 (predicted) (Zfp499_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665826-S	ILMN_67883	POFUT2_PREDICTED	XM_228073.4	XM_228073.4		309686	109509270	XM_228073.4	Pofut2_predicted	XP_228073.4	ILMN_1355335	0003850048	S	2648	AGCTACTGCCCAGGTCTCCATCCCAAGCACCAAGGTAGTCCCTGAGCACA	20	-	11763615-11763664	20p12	PREDICTED: Rattus norvegicus protein O-fucosyltransferase 2 (predicted) (Pofut2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646443-S	ILMN_276317	RGD1311072	NM_001033890.1	NM_001033890.1		296410	76559906	NM_001033890.1	RGD1311072	NP_001029062.1	ILMN_1356493	0003940110	S	1825	GCTGTCAGAAGGCTGAGGCAGGAAGATCACAGAGAGGTCAAAGCTGGCAG	3	+	163379438-163379487	3q42	Rattus norvegicus similar to 2410001C21Rik protein (RGD1311072), mRNA.				MGC124670	MGC124670
Rattus norvegicus	RefSeq	GI_62658034-S	ILMN_282374	LOC360728	XM_001053119.1	XM_001053119.1		360728	109494578	XM_001053119.1	LOC360728	XP_001053119.1	ILMN_1351567	0005550433	S	3635	GCCTCTGTTGACCAGCTTCTGGAGATTATGTGTGTGCCATACCAGTGGCG					PREDICTED: Rattus norvegicus similar to Probable cation-transporting ATPase 13A3 (ATPase family homolog up-regulated in senescence cells 1) (LOC360728), mRNA.					
Rattus norvegicus	RefSeq	GI_62655516-S	ILMN_52896	LOC316764	XM_237548.3	XM_237548.3		316764	62655516	XM_237548.3	LOC316764	XP_237548.3	ILMN_1373863	0000360133	S	7991	AGCAGCTCTGGTTCCCAGTAAAGCCTCCATGGCAGCCCCAGACAGACTCA				9q37	PREDICTED: Rattus norvegicus similar to KIAA0802 protein (predicted) (LOC316764), mRNA.					
Rattus norvegicus	RefSeq	GI_62718694-S	ILMN_54355	LOC501450	XM_576861.1	XM_576861.1		501450	62718694	XM_576861.1	LOC501450	XP_576861.1	ILMN_1355006	0000110093	S	248	TGCAGTGCCCCCTAGTGGACTGACACCAACAACAAACGTGATTTCAGGCC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC501450), mRNA.					
Rattus norvegicus	RefSeq	GI_62655752-S	ILMN_287172	HCFC1R1	XM_001055621.1	XM_001055621.1		287097	109490258	XM_001055621.1	Hcfc1r1	XP_001055621.1	ILMN_1365949	0005910075	S	588	CTGAGCTCGGTGGAACGTTAGATTCGAAGCAGCCTGGGAAGAGAAGGTGT				10q12	PREDICTED: Rattus norvegicus host cell factor C1 regulator 1 (XPO1-dependent) (Hcfc1r1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62638827-S	ILMN_68693	LOC499065	XM_574346.1	XM_574346.1		499065	62638827	XM_574346.1	LOC499065	XP_574346.1	ILMN_1373852	0004120403	S	1827	CAGCACTTACAGTTGGTGGTCACAGATGGACTGGGAGGAGGTGGATGCCC				1q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9930022N03 gene (LOC499065), mRNA.					
Rattus norvegicus	RefSeq	GI_13027441-S	ILMN_268315	ARHGEF11	NM_023982.1	NM_023982.1		78966	13027441	NM_023982.1	Arhgef11	NP_076472.1	ILMN_1356934	0006290609	S	4304	AGCAGCTCACCATCAAGCTTCACAGACTGAAGGACATGGAGCTGGCCCAC	2	+	179795136-179795167:179795465-179795482	2q34	Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 11 (Arhgef11), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates levels of neurotransmitter [goid 1505] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Gtrap48	Gtrap48
Rattus norvegicus	RefSeq	GI_62646114-S	ILMN_68973	LOC690571	XM_215885.4	XM_215885.4		690571	109469087	XM_215885.4	LOC690571	XP_215885.4	ILMN_1368879	0003120309	S	1487	GAGGGTGTGCCATGCTCGCTGTCCCAGTCTACATCCAGGCCTCAGAGTAA	3	+	145123301-145123350	3q41	PREDICTED: Rattus norvegicus similar to zinc finger protein 341 (LOC690571), mRNA.					
Rattus norvegicus	RefSeq	GI_62661906-S	ILMN_67614	LOC501992	XM_577420.1	XM_577420.1		501992	62661906	XM_577420.1	LOC501992	XP_577420.1	ILMN_1358598	0006900093	S	1228	ACACAGTGGCAGAAACCACAGGGGGAGCTGAGCACAAACCGAGAGGGGAG				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC501992), mRNA.					
Rattus norvegicus	RefSeq	GI_34874952-S	ILMN_67614	LOC501992	XM_577420.1	XM_577420.1		501992	62661906	XM_577420.1	LOC501992	XP_577420.1	ILMN_1357143	0000520154	S	942	GGAGACTCTGTGACTCAAACCGAAGGCCAAGTGACCATCTCAGAAAATGG				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC501992), mRNA.					
Rattus norvegicus	RefSeq	GI_8392899-S	ILMN_287290	RUNX1	NM_017325.1	NM_017325.1		50662	8392899	NM_017325.1	Runx1	NP_059021.1	ILMN_1371943	0005860687	S	1795	CGCCAGGAGAGCCCTTGGAGGCCAACAGGAGGGAAACTGTGAATGCTTCT	11	-	32623626-32623675	11q11	Rattus norvegicus runt related transcription factor 1 (Runx1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of granulocyte differentiation [goid 30854] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; The stages of blood cell formation that take place within the embryo [goid 35162] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence TAS]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]	Cbfa2; Aml1	Cbfa2; Aml1
Rattus norvegicus	RefSeq	GI_31342050-S	ILMN_284164	ARFGEF2	NM_181083.2	NM_181083.2		296380	31342050	NM_181083.2	Arfgef2	NP_851597.2	ILMN_1366511	0005550053	S	5480	GCCTGAACACTGGCCTTGTCACAGTCCCCAGCAGAGGCTCAAGGTGTCAT	3	+	158051072-158051121	3q42	Rattus norvegicus ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) (Arfgef2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IMP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IMP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence TAS]; Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence IPI]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence IMP]	Big2	Big2
Rattus norvegicus	RefSeq	GI_62651871-S	ILMN_63736	PWP1_PREDICTED	XM_343186.3	XM_343186.3		362856	109480349	XM_343186.3	Pwp1_predicted	XP_343187.1	ILMN_1373641	0000870142	S	1909	CAGCGCTAGGGAGGAGAGAGATGTGTAGATTTCCTAAGACATGTGGCCAG	7	-	20121025-20121074	7q13	PREDICTED: Rattus norvegicus PWP1 homolog (S. cerevisiae) (predicted) (Pwp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667554-S	ILMN_298372	SLC10A3	NM_001024368.1	NM_001024368.1		501665	66730540	NM_001024368.1	Slc10a3	NP_001019539.1	ILMN_1356283	0003140086	S	1536	CTGTCTCTGCGCCGCCTTCAAGCAGACTATGCCTCTCAGGCCCCTTTCAT	X	+	160238296-160238345	Xq37	Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter family), member 3 (Slc10a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576408-S	ILMN_278652	OLR1568	NM_001000532.1	NM_001000532.1		363826	47576408	NM_001000532.1	Olr1568	NP_001000532.1	ILMN_1353922	0001340441	S	647	CTTATGGTCGTGTTTTCCTTGCTGTCTACCGCATGCATTCTGGGGCAGGG	11	+	83643933-83643982	11q23	Rattus norvegicus olfactory receptor 1568 (Olr1568), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1568	Olr1568
Rattus norvegicus	RefSeq	GI_62649732-S	ILMN_67583	LOC313060	XM_232779.3	XM_232779.3		313060	62649732	XM_232779.3	LOC313060	XP_232779.3	ILMN_1354067	0000070685	S	2551	TGCACGTCTGTGAGGACATCAGTGGAGAAGCTAACCGCCACGCCCACCCA				5q36	PREDICTED: Rattus norvegicus similar to SPOC domain containing 1 (LOC313060), mRNA.					
Rattus norvegicus	RefSeq	GI_7549755-S	ILMN_269889	DBP	NM_012543.1	NM_012543.1		24309	7549755	NM_012543.1	Dbp	NP_036675.1	ILMN_1353765	0006860056	S	1519	CCTTGTGGGGGTGGGGAGGGTCCTGTGTGCACTTTTAGCATGTCGAGGAA	1	+	96178381-96178430	1q22	Rattus norvegicus D site albumin promoter binding protein (Dbp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEP]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	MGC105474	MGC105474
Rattus norvegicus	RefSeq	GI_62718566-S	ILMN_68806	LOC501424	XM_576834.1	XM_576834.1		501424	62718566	XM_576834.1	LOC501424	XP_576834.1	ILMN_1371304	0001980451	S	183	TGAAGCCTGAACACCGAACGATACCCACAAGACAGTGGACCAGGATCTCG					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34) (LOC501424), mRNA.					
Rattus norvegicus	RefSeq	GI_62665112-S	ILMN_298520	RGD1560620_PREDICTED	XM_001074445.1	XM_001074445.1		291940	109508731	XM_001074445.1	RGD1560620_predicted	XP_001074445.1	ILMN_1350505	0007040670	S	4313	GCCTTGGCCTTCAGTGGCTCCCCGCTGCATCTTGACAAATACCGGAACTC				19q11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1560620_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664542-S	ILMN_63498	RGD1304731_PREDICTED	XM_214556.4	XM_214556.4		291549	109506718	XM_214556.4	RGD1304731_predicted	XP_214556.4	ILMN_1372730	0004010538	S	913	GAATGGAAAGCCAGAGTGCCCAAGAACCCGCTGTACCTCTACTCTCGGAG	18	+	62013804-62013853	18q12.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5330437I02 gene (predicted) (RGD1304731_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012417-S	ILMN_282900	RT1-CE11	NM_001008834.1	NM_001008834.1		414791	57012417	NM_001008834.1	RT1-CE11	NP_001008834.1	ILMN_1368781	0000110435	S	1051	CCAGGCAAGGCCAACCCCAACAGCTCTGTGTCTCTCCCAGATTGTAAAGC	20|NW_047606.1	+	133871-133874:134082-134126:134261-134261		Rattus norvegicus RT1 class I, CE11 (RT1-CE11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62650264-S	ILMN_51158	LOC362690	XM_347074.2	XM_347074.2		362690	62650264	XM_347074.2	LOC362690	XP_347075.2	ILMN_1361220	0001340270	S	612	GCTCTGGGGCAGTGGTTCTTGACCTTCTTAATGCTACCACCCTTTAACAC					PREDICTED: Rattus norvegicus hypothetical LOC362690 (LOC362690), mRNA.					
Rattus norvegicus	RefSeq	GI_62650073	ILMN_62060	RPS7	XM_213053.2	XM_213053.2		29258	62650073	XM_213053.2	Rps7	XP_213053.2	ILMN_1650594	0002650279	S	1	ATGGCTCTTTCTAAGCCGGCACTCCGTAAGGACGAAGCCATGTTCAGCTC				6q16	PREDICTED: Rattus norvegicus ribosomal protein S7 (Rps7), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660487-S	ILMN_51658	PGM1_PREDICTED	XM_214047.4	XM_214047.4		289632	109499697	XM_214047.4	Pgm1_predicted	XP_214047.4	ILMN_1355760	0004200093	S	1810	GTTAATGGAGGGGTGGCAACCATGCGGACCAGTGGGACCGAGCCCAAAAT	14	-	46842699-46842748	14p11	PREDICTED: Rattus norvegicus phosphoglucomutase 1 (predicted) (Pgm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666198-S	ILMN_62807	LOC502449	XM_577930.1	XM_577930.1		502449	62666198	XM_577930.1	LOC502449	XP_577930.1	ILMN_1352515	0003360458	S	165	TCTGCGTCCCACATCCGACTCGAGGAAGAGTTTGGCTCCAGGTCACAAGA				20q12	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC67567 (LOC502449), mRNA.					
Rattus norvegicus	RefSeq	GI_62717934-S	ILMN_56293	LOC501258	XM_576677.1	XM_576677.1		501258	62717934	XM_576677.1	LOC501258	XP_576677.1	ILMN_1370867	0002850070	S	74	AGAATCTGGACGACTAGGACATTTTCTCTCGGCACTCACATGACAGAGGC					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34) (LOC501258), mRNA.					
Rattus norvegicus	RefSeq	GI_13592028-S	ILMN_288353	PSEN2	NM_031087.1	NM_031087.1		81751	13592028	NM_031087.1	Psen2	NP_112349.1	ILMN_1368494	0004150487	S	1857	TCAGGAAGGACGCTAAGCACCAACACCCTGACCAGAGGACAAAAGCCAGT	13	-	95934382-95934431	13q26	Rattus norvegicus presenilin 2 (Psen2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence ISS]; The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; The process whereby precursor cell type acquires the specialized features of a hemopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells [goid 2244] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response [goid 2286] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte lineage [goid 2573] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process that modulates the frequency, rate or extent of EGF receptor activity [goid 7176] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The process by which the neural tube is regionalized in the dorsoventral axis [goid 21904] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification [goid 44267] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process by which the anatomical structures of brain are generated and organized. Morphogenesis pertains to the creation of form. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 48854] [evidence ISS]; The chemical reactions and pathways involving beta-amyloid, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP) [goid 50435] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of coagulation [goid 50820] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; The process leading to the attainment of the full functional capacity of a protein [goid 51604] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656716-S	ILMN_64826	TBX4_PREDICTED	XM_220811.4	XM_220811.4		303399	109488729	XM_220811.4	Tbx4_predicted	XP_220811.4	ILMN_1374592	0005890138	S	1546	ATTGCCGCCCAGAGTGCCCAGCCACCAGGAAACGCCCACTTTAGTGTGTA	10	+	74164371-74164420	10q26	PREDICTED: Rattus norvegicus T-box 4 (predicted) (Tbx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981507-S	ILMN_268370	SCN2B	NM_012877.1	NM_012877.1		25349	6981507	NM_012877.1	Scn2b	NP_037009.1	ILMN_1367526	0001050025	S	730	GCAGAAGCTGAGCACGGATGACCTGAAGACCGAAGAGGAAGGCAAGACGG	8	+	48078502-48078551	8q22	Rattus norvegicus sodium channel, voltage-gated, type II, beta (Scn2b), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]	SCNB2	SCNB2
Rattus norvegicus	RefSeq	GI_62659283-S	ILMN_268671	IKBKE_PREDICTED	XM_001058036.1	XM_001058036.1		363984	109498586	XM_001058036.1	Ikbke_predicted	XP_001058036.1	ILMN_1357139	0000050278	S	2971	CCTGCATTTGAGAAAGTGGGAAGTTGAGGCCAACGGCTGGTGCTTTAGGG				13q13	PREDICTED: Rattus norvegicus inhibitor of kappaB kinase epsilon (predicted) (Ikbke_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639350-S	ILMN_50774	PRODH2	XM_341825.3	XM_341825.3		361538	109458548	XM_341825.3	Prodh2	XP_341826.2	ILMN_1362925	0000380239	S	1140	ATGTGGGAGCTGGGCATTCCTCTGGATGGGCCTGTCTGCTTCGGACAACT	1	+	85557227-85557276	1q21	PREDICTED: Rattus norvegicus proline dehydrogenase (oxidase) 2 (Prodh2), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]	The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid [goid 6537] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins [goid 6562] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-proline + acceptor = (S)-1-pyrroline-5-carboxylate + reduced acceptor [goid 4657] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9994170-S	ILMN_293626	ISL2	NM_020471.1	NM_020471.1		57233	9994170	NM_020471.1	Isl2	NP_065204.1	ILMN_1354825	0006550204	S	1209	GAGACTCACCCATGCTCAGGCCATTCCAGCTCTGAAAAATCTCCGGCCCT	8	+	59110632-59110681	8q24	Rattus norvegicus insulin related protein 2 (islet 2) (Isl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of visceral motor neurons. Visceral motor neurons innervate glandular targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21524] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650528-S	ILMN_287946	RGD1561737_PREDICTED	XM_001075092.1	XM_001075092.1		500636	109479204	XM_001075092.1	RGD1561737_predicted	XP_001075092.1	ILMN_1350711	0006650707	S	1015	CTGGCATCGGACACAGGTGGTGGGGATTTTTGCTGGATTTGGGCTCCTGC				6q16	PREDICTED: Rattus norvegicus similar to mKIAA0161 protein (predicted) (RGD1561737_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650732-S	ILMN_51732	LRFN5_PREDICTED	XM_234219.4	XM_234219.4		314164	109478279	XM_234219.4	Lrfn5_predicted	XP_234219.3	ILMN_1351067	0005050435	S	2303	GTCTCTGATACAGTGGAACTGGCTCCCTCACCACATGGTTCATCCCCTTT	6	+	82902684-82902733	6q23	PREDICTED: Rattus norvegicus leucine rich repeat and fibronectin type III domain containing 5 (predicted) (Lrfn5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656952-S	ILMN_56678	MLLT6_PREDICTED	XM_239329.3	XM_239329.3		303504	62656952	XM_239329.3	Mllt6_predicted	XP_239329.3	ILMN_1363704	0000510603	S	3196	GAATCCAGCTTTTGGCACCTCCTCTCTTCACAGACTACGCCCGAGGCAGC				10q31	PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed lineage-leukemia translocation to 6 homolog (Drosophila) (predicted) (Mllt6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658644-S	ILMN_61096	LOC304338	XM_221978.3	XM_221978.3		304338	62658644	XM_221978.3	LOC304338	XP_221978.3	ILMN_1355324	0002360332	S	659	CACGTCAACCACAAATGCCCCAGATTGGAGGTCAATTTATGCTGACTGGG				12q11	PREDICTED: Rattus norvegicus similar to ribosomal protein S8 (LOC304338), mRNA.					
Rattus norvegicus	RefSeq	GI_27667069-S	ILMN_281724	ZDHHC22	NM_001039325.1	NM_001039325.1		299211	86129545	NM_001039325.1	Zdhhc22	NP_001034414.1	ILMN_2039727	0006770598	S	596	TGGTGGCCGGAGTGGCCTATATCTCAGCTGTCCTTTCCATCTCCTTCGCC	6	-	111121029-111121078	6q31	Rattus norvegicus zinc finger, DHHC-type containing 22 (Zdhhc22), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651095-S	ILMN_281724	ZDHHC22	NM_001039325.1	NM_001039325.1		299211	86129545	NM_001039325.1	Zdhhc22	NP_001034414.1	ILMN_1365534	0006550300	S	477	CCGAGTCACGCTGAGGCACGACCATCACTGTTTCTTCACCGGCAACTGCA	6	-	111121148-111121197	6q31	Rattus norvegicus zinc finger, DHHC-type containing 22 (Zdhhc22), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650144-S	ILMN_65771	LOC500595	XM_575969.1	XM_575969.1		500595	62650144	XM_575969.1	LOC500595	XP_575969.1	ILMN_1349953	0003850609	S	986	TACGAGGTTGAGAAGGACCTGGCGCCCTCTGCAGGCCTCTCGGGTAGCTT				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32825 (LOC500595), mRNA.					
Rattus norvegicus	RefSeq	GI_62638433-S	ILMN_49247	RGD1307896_PREDICTED	XM_229475.4	XM_229475.4		316916	109457650	XM_229475.4	RGD1307896_predicted	XP_229475.2	ILMN_1350367	0002350369	S	2062	CATATACCCCACATGAACTTGGGTCTTGGGAATGGTGCCAGTGGGCAGTC	1	-	30474938-30474987	1p11	PREDICTED: Rattus norvegicus similar to cisplatin resistance related protein CRR9p (predicted) (RGD1307896_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658327-S	ILMN_65175	RGD1563425_PREDICTED	XM_573340.2	XM_573340.2		498129	109495004	XM_573340.2	RGD1563425_predicted	XP_573340.2	ILMN_1369334	0000520576	S	1292	ACCTTCGAGGCCCCCAGATCCCTATGTACCCTTGCCGGAGCCAGGAATAA	12	-	2676817-2676817:2676818-2676866	12p12	PREDICTED: Rattus norvegicus similar to FLJ35784 protein (predicted) (RGD1563425_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651428	ILMN_63465	LOC503048	XM_578571.1	XM_578571.1		503048	62651428	XM_578571.1	LOC503048	XP_578571.1	ILMN_1650506	0002900673	S	191	AGCACTACCAACCACGGGAGCACTACCAACCACGGGAGCACTACCAACCA					PREDICTED: Rattus norvegicus similar to ENOD2 (LOC503048), mRNA.					
Rattus norvegicus	RefSeq	GI_62652206-S	ILMN_57591	GNS_PREDICTED	XM_576231.1	XM_576231.1		299825	62652206	XM_576231.1	Gns_predicted	XP_576231.1	ILMN_2040144	0001580369	I	3533	GCTGATCACCACCGGGACAAATGGGTGTCCTGGGGTTCTTTAGCTCACCA				7q22	PREDICTED: Rattus norvegicus glucosamine (N-acetyl)-6-sulfatase (predicted) (Gns_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078806-A	ILMN_266425	RGD1311196	XM_001053329.1	XM_001053329.1		310652	109467141	XM_001053329.1	RGD1311196	XP_001053329.1	ILMN_1376814	0004540044	S	772	GCGTGAGAAGAGAGGAAGTGACAGAGCCTGGTGGAGCTGGAGAAGCAGCT				2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein (RGD1311196), mRNA.					
Rattus norvegicus	RefSeq	GI_62657420-S	ILMN_62880	LOC501743	XM_577144.1	XM_577144.1		501743	62657420	XM_577144.1	LOC501743	XP_577144.1	ILMN_1361880	0000430541	S	433	GGAACCCCGACTTTGTGGAGTATGTACCTCAGCAGACACTGGTGACACAG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732429D16 (LOC501743), mRNA.					
Rattus norvegicus	RefSeq	GI_12408325-A	ILMN_267017	GPHN	NM_022865.2	NM_022865.2		64845	88853560	NM_022865.2	Gphn	NP_074056.2	ILMN_1376412	0003170239	S	3037	GCTCTCACCCTCGCAGCCTCTGGCACACACAGTACTAGCAGGCAGTAACT				6q24	Rattus norvegicus gephyrin (Gphn), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence TAS]; The biosynthesis of a synapse [goid 7416] [evidence IEP]; The biological process by which a synapse between a motor neuron and a muscle is initially formed [goid 7529] [evidence ISS]; The biological process by which a synapse between a motor neuron and a muscle is initially formed [goid 7529] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The biological process by which a synapse between a motor neuron and a muscle is initially formed [goid 7529] [evidence IEA]; The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands [goid 6777] [evidence IEA]; The biological process by which a synapse between a motor neuron and a muscle is initially formed [goid 7529] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence TAS]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence TAS]; Functions to provide a physical support for the assembly of a multiprotein complex [goid 32947] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15215304] [evidence IPI]	Geph	Geph
Rattus norvegicus	RefSeq	GI_50511323-S	ILMN_286599	MRGPRH	NM_001002281.1	NM_001002281.1		404641	50511323	NM_001002281.1	Mrgprh	NP_001002281.1	ILMN_1363389	0006650142	S	894	ACAGAAGGTCTTTGAGGAAAAGCCAGTGGTGGCCTCGAGGGAGAATGAGG	1	-	42146971-42147020	1q11	Rattus norvegicus MAS-related GPR, member H (Mrgprh), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgHGPR90	MrgHGPR90
Rattus norvegicus	RefSeq	GI_62654806-S	ILMN_53144	LOC501114	XM_576532.1	XM_576532.1		501114	62654806	XM_576532.1	LOC501114	XP_576532.1	ILMN_1353863	0005390315	S	629	GAGTGAAGACTACCAGATCAAAGGACCATAGACATACTAGAAGCCTACAG					PREDICTED: Rattus norvegicus similar to LRRGT00099 (LOC501114), mRNA.					
Rattus norvegicus	RefSeq	GI_55741548-S	ILMN_294252	MRPL13	NM_001006985.1	NM_001006985.1		299938	55741548	NM_001006985.1	Mrpl13	NP_001006986.1	ILMN_1351648	0003840129	S	596	TGTGACCTAGGGCAGAGAGAGAACACGGGAGCTCACTGTGGAGAACACTC	7	-	92047413-92047462	7q32	Rattus norvegicus mitochondrial ribosomal protein L13 (Mrpl13), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC105961	MGC105961
Rattus norvegicus	Unigene	Rn.28532	ILMN_160917	RN.28532	Rn.28532		Rn.28532		50386220	CO573591			ILMN_1530341	0002100450	S	327	TTGTCCTGATAAAATACCATCATCAAGATCAACTAATAATAGGAAAGGTT					AGENCOURT_28458280 NIH_MGC_247 Rattus norvegicus cDNA clone IMAGE:7323415 5', mRNA					
Rattus norvegicus	RefSeq	GI_62658096-S	ILMN_48217	LOC303930	XM_221450.2	XM_221450.2		303930	62658096	XM_221450.2	LOC303930	XP_221450.2	ILMN_1358028	0003170524	S	436	CTGCTATAACCAACCATACAGTCAACGGACAGAAGCCTGCCCTGTCACCG				11q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (LOC303930), mRNA.					
Rattus norvegicus	RefSeq	GI_62650744-S	ILMN_52373	RGD1310474_PREDICTED	XM_234236.4	XM_234236.4		314169	109478210	XM_234236.4	RGD1310474_predicted	XP_234236.4	ILMN_1367231	0006550601	S	5487	GCTGGTGGTTTTATGGCACCTCTTAGGAACTATGACACACAGTGGCTCCC	6	+	86379215-86379264	6q24	PREDICTED: Rattus norvegicus similar to KIAA0423 (predicted) (RGD1310474_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646211-S	ILMN_50696	CPNE1_PREDICTED	XM_342555.2	XM_342555.2		362249	62646211	XM_342555.2	Cpne1_predicted	XP_342556.2	ILMN_1350304	0000580609	S	1570	AGCTGGATGCTGATGGCGGCCCACTTCGTACACGCTCTGGAGAAGCAGCT					PREDICTED: Rattus norvegicus copine I (predicted) (Cpne1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981443-S	ILMN_292385	PTPN11	NM_013088.1	NM_013088.1		25622	6981443	NM_013088.1	Ptpn11	NP_037220.1	ILMN_1363069	0000380682	S	1808	TGCGGAAATGCGGGAGGACAGCGCTCGAGTCTATGAGAACGTGGGCCTCA	12	+	36554659-36554662:36557047-36557092	12q16	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 11 (Ptpn11), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence IEA]; A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds [goid 77] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence IEA]; The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence IEA]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence IEA]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm [goid 46825] [evidence IEA]; Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm [goid 46825] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence ISS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IEA]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence ISS]; The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs [goid 48609] [evidence IEA]; The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs [goid 48609] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cortisol from a cell or group of cells [goid 51463] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cortisol from a cell or group of cells [goid 51463] [evidence ISS]; Any process that decreases or stops the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60125] [evidence IEA]; Any process that decreases or stops the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60125] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA];  [goid 4726] [evidence ISS]; Interacting selectively with the insulin receptor [goid 5158] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid [goid 43274] [evidence IDA]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence IPI]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence IEA]; Interacting selectively with a receptor for peptide hormones [goid 51428] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15128762] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978730-S	ILMN_278633	CYP17A1	NM_012753.1	NM_012753.1		25146	6978730	NM_012753.1	Cyp17a1	NP_036885.1	ILMN_1354561	0006130136	S	1548	AGCACCTAGAGGCCACAACTAACATCCCCGATCCATACCTCAACACCCAC	1	-	251965568-251965611:251965612-251965617	1q54	Rattus norvegicus cytochrome P450, family 17, subfamily a, polypeptide 1 (Cyp17a1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IMP]; The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6702] [evidence TAS]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: a steroid + AH2 + O2 = a 17a-hydroxysteroid + A + H2O [goid 4508] [evidence TAS]; Catalysis of the reaction: a steroid + AH2 + O2 = a 17a-hydroxysteroid + A + H2O [goid 4508] [evidence IDA]; Catalysis of the reaction: a steroid + AH2 + O2 = a 17a-hydroxysteroid + A + H2O [goid 4508] [evidence ISS]; Catalysis of the reaction: a steroid + AH2 + O2 = a 17a-hydroxysteroid + A + H2O [goid 4508] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	Cyp17	Cyp17
Rattus norvegicus	RefSeq	GI_62662563	ILMN_293247	HAND2	NM_022696.1	NM_022696.1		64637	12083652	NM_022696.1	Hand2	NP_073187.1	ILMN_1649869	0004920707	S	599	AAGTACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGC				16p11	Rattus norvegicus heart and neural crest derivatives expressed 2 (Hand2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence IEA]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657973	ILMN_277051	RGD1562189_PREDICTED	XM_001071774.1	XM_001071774.1		288054	109494485	XM_001071774.1	RGD1562189_predicted	XP_001071774.1	ILMN_1651004	0002850044	S	2381	CGTCTCGTGATGAGCAGGACTTCAGAAATGGCCTGGCAGCGTTAGATGCC				11q22	PREDICTED: Rattus norvegicus similar to CCDC14 protein (predicted) (RGD1562189_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657161	ILMN_69705	LOC498007	XM_579767.1	XM_579767.1		498007	62657161	XM_579767.1	LOC498007	XP_579767.1	ILMN_1650081	0002060072	S	1173	CTTGGGTGGGCCTGGAATGTGGAAGCCCCTTGTCTGCCTTTTGTTGAACC					PREDICTED: Rattus norvegicus LOC498007 (LOC498007), mRNA.					
Rattus norvegicus	RefSeq	GI_62667163-S	ILMN_288840	RGD1559460_PREDICTED	XR_008287.1	XR_008287.1		501612	109512277	XR_008287.1	RGD1559460_predicted		ILMN_1372552	0002030086	S	1249	GGATCGGAAGAATCAGACAGTAACCCTGATATCAGTGCGCAACAAGTCCC				Xq33	PREDICTED: Rattus norvegicus similar to hypothetical protein 4932411N23 (predicted) (RGD1559460_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577556	ILMN_267690	OLR668	NM_001000348.1	NM_001000348.1		295875	47577556	NM_001000348.1	Olr668	NP_001000348.1	ILMN_1650421	0003870400	S	418	TGTGCAATTCTGGTGGGGATAGCCTGGACAGGGGGCTTCTTGCATTCTAT	3	-	73169921-73169970	3q24	Rattus norvegicus olfactory receptor 668 (Olr668), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr668	Olr668
Rattus norvegicus	RefSeq	GI_62718219	ILMN_48863	LOC501328	XM_576739.1	XM_576739.1		501328	62718219	XM_576739.1	LOC501328	XP_576739.1	ILMN_1651041	0006290484	S	807	CTCATCCCGACAACACCATTTGAGAGACATCTGAGGGGACTGCCTTGATG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501328), mRNA.					
Rattus norvegicus	RefSeq	GI_62660848-S	ILMN_269762	CEP68_PREDICTED	XM_001059836.1	XM_001059836.1		289822	109501076	XM_001059836.1	Cep68_predicted	XP_001059836.1	ILMN_1366250	0000510528	S	2187	AGGATGTCCTTGTGAGGATCGCAGAGCAGTCTGGAGAGCTGGAGAGCCGT				14q22	PREDICTED: Rattus norvegicus centrosomal protein 68 (predicted) (Cep68_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34863504-S	ILMN_67951	LOC363070	XM_343398.1	XM_343398.1		363070	34863504	XM_343398.1	LOC363070	XP_343399.1	ILMN_1365505	0002030736	S	306	CTACGGAGAAAGGGCCATGCTGGGTGCCTTGACGAACCGCCCCGATTCTT				8q24	PREDICTED: Rattus norvegicus LOC363070 (predicted) (LOC363070), mRNA.					
Rattus norvegicus	RefSeq	GI_62658742-S	ILMN_66437	LOC501830	XM_577242.1	XM_577242.1		501830	62658742	XM_577242.1	LOC501830	XP_577242.1	ILMN_1367685	0000060278	S	2	GGGCTCTGATGACAGCTCACTGGGTATCGACAAAGGGAATAGCCTGGTTG					PREDICTED: Rattus norvegicus similar to Zinc finger protein ZFP (LOC501830), mRNA.					
Rattus norvegicus	RefSeq	GI_62641046-S	ILMN_67042	ART1_PREDICTED	XM_218975.4	XM_218975.4		308873	109459151	XM_218975.4	Art1_predicted	XP_218975.3	ILMN_1367302	0006550528	S	1213	CTGTAGGAAGGAGACTGAGGACAGGCAGAGGACTGGAGGACAGGCAGAGA	1	+	159590600-159590649	1q32	PREDICTED: Rattus norvegicus ADP-ribosyltransferase 1 (predicted) (Art1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644820-S	ILMN_50430	GTF3C5_PREDICTED	XM_342399.3	XM_342399.3		362095	109467963	XM_342399.3	Gtf3c5_predicted	XP_342400.2	ILMN_1360022	0001740184	S	1540	TGCACAGAGAAAGATGGGTGGTGCCTCCCCAAGACCACAGACCACCTGAG	3	-	7554370-7554419	3p12	PREDICTED: Rattus norvegicus general transcription factor IIIC, polypeptide 5 (predicted) (Gtf3c5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656512-S	ILMN_301266	SHPK	NM_001033682.1	NM_001033682.1		287479	76096311	NM_001033682.1	Shpk	NP_001028854.1	ILMN_1366109	0003190121	S	1273	AACAGCTCCAAGAGTGGGGTGTGGAACGGGTGGTGGGGAGTGGAAGTGCA	10	+	60098702-60098751	10q24	Rattus norvegicus sedoheptulokinase (Shpk), mRNA.		The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	MGC124840	MGC124840
Rattus norvegicus	RefSeq	GI_62657244-S	ILMN_262392	PRKCA	XM_001081588.1	XM_001081588.1		24680	109492114	XM_001081588.1	Prkca	XP_001081588.1	ILMN_1372407	0003710176	S	3680	CTGCTGGGGCCTCTATTACCCGCTACCCCACACACTGGCACTCTATCAGA				10q32.1	PREDICTED: Rattus norvegicus protein kinase C, alpha (Prkca), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IMP]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP]; Any process induced by intracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8629] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence IMP]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence IDA]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence IDA]; Generation of a long process from a neuron whose cell body resides in the central nervous system. The process carries efferent (outgoing) action potentials from the cell body towards target cells [goid 21955] [evidence IMP]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The directed movement of a protein to a specific location [goid 45184] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of exocytosis [goid 45921] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46325] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence IEP]; Any process that modulates the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport [goid 48259] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50730] [evidence ISS]; Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50930] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51965] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence ISS]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol and calcium [goid 4698] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol and calcium [goid 4698] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666076-S	ILMN_57166	LOC365579	XM_577904.1	XM_577904.1		365579	62666076	XM_577904.1	LOC365579	XP_577904.1	ILMN_1366181	0000630102	S	1582	GGCCTATGTGGCCTCCAAAGAATAAGAAACCCATTGCCTGGGAGAGTTTC				20q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC365579), mRNA.					
Rattus norvegicus	RefSeq	GI_46485406-S	ILMN_55636	HYAL3	NM_207599.2	NM_207599.2		300993	67514569	NM_207599.2	Hyal3	NP_997482.2	ILMN_1363568	0006940086	S	1078	AGCTGGCGTAGTGCTCTGGGGGGACCTGAGTGTTTCTAGCTCTGAGGAAG	8	+	112833358-112833403:112833507-112833510	8q32	Rattus norvegicus hyaluronoglucosaminidase 3 (Hyal3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]; Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule [goid 8080] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641293-S	ILMN_282773	HIRIP3	NM_001025725.1	NM_001025725.1		361650	71043651	NM_001025725.1	Hirip3	NP_001020896.1	ILMN_1355241	0005080280	S	1861	GGGAGCTTTATCACCGAACCCTGGACTCAGATGAGGAGCGGCCACGTCAA	1	+	186044176-186044225	1q36	Rattus norvegicus HIRA interacting protein 3 (Hirip3), mRNA.				MGC116216	MGC116216
Rattus norvegicus	RefSeq	GI_62643859-S	ILMN_267960	LOC368158	XM_001058675.1	XM_001058675.1		368158	109467160	XM_001058675.1	LOC368158	XP_001058675.1	ILMN_1362698	0004150019	S	1556	CACTGACATTGAGTCCTCTGAGGGGCTGTCAAAGTGACCCGGAGGAAGGA				2q34	PREDICTED: Rattus norvegicus similar to Nuclear receptor ROR-gamma (Nuclear receptor RZR-gamma) (Thymus orphan receptor) (TOR) (LOC368158), mRNA.					
Rattus norvegicus	RefSeq	GI_31982383-S	ILMN_278271	ADH1	XM_001078334.1	XM_001078334.1		24172	109467713	XM_001078334.1	Adh1	XP_001078334.1	ILMN_2039089	0003120754	S	622	GTAAGCGTCATTGTCGGGGTGCCTCCCAGTGCCCAAAGCCTCTCCGTTAA				2q44	PREDICTED: Rattus norvegicus alcohol dehydrogenase 1 (class I) (Adh1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity [goid 1523] [evidence IEA]; The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity [goid 1523] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation [goid 6068] [evidence ISS];  [goid 6069] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]; The chemical reactions and pathways resulting in the formation of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol [goid 46186] [evidence IDA]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence TAS]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence ISS]; Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with ethanol, CH(3)-CH(2)-OH [goid 35276] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_31543346-A	ILMN_278871	NSEP1	NM_031563.2	NM_031563.2		29206	31543346	NM_031563.2	Nsep1	NP_113751.2	ILMN_1376984	0003850603	S	1407	TTTATTATTTTTACCTAAAGATGTCTCTTTTTGGTAATGACAAACGTGTT				10q22	Rattus norvegicus nuclease sensitive element binding protein 1 (Nsep1), mRNA.				MGC124971; MGC112628; Ybx1	MGC124971; MGC112628; Ybx1
Rattus norvegicus	RefSeq	GI_62661756-S	ILMN_264809	RGD1308772_PREDICTED	XR_008855.1	XR_008855.1		290381	109502753	XR_008855.1	RGD1308772_predicted		ILMN_1362175	0003840707	S	5888	ACCCAGCCCGCTTTGCCCAGATCCTCACAAGCAATCCTCAAGTAAATGCC				15q11-q12	PREDICTED: Rattus norvegicus similar to KIAA0564 protein (predicted) (RGD1308772_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657854-S	ILMN_57865	LOC360712	XM_340983.2	XM_340983.2		360712	62657854	XM_340983.2	LOC360712	XP_340984.2	ILMN_1371268	0005910020	S	955	AATAAGTGTGAAAGCGCTGGGCTCGCCAGTGGCATCTACGCAAGAGCAGG				11q21	PREDICTED: Rattus norvegicus similar to microrchidia (LOC360712), mRNA.					
Rattus norvegicus	RefSeq	GI_6981567-S	ILMN_286676	SOD3	NM_012880.1	NM_012880.1		25352	6981567	NM_012880.1	Sod3	NP_037012.1	ILMN_1361581	0006840435	S	1645	GGTGCCTGCACCCCAAGGAGAGCAGCTCCTCCGAGAGTATTTGACAACCT	14	-	63381481-63381530	14q11	Rattus norvegicus superoxide dismutase 3, extracellular (Sod3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion [goid 303] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IDA]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence IEA]; Catalysis of the reaction: 2 peroxide radical + 2 H+ = O2 + H2O2 [goid 4784] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage [goid 16209] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ECSODPT	ECSODPT
Rattus norvegicus	RefSeq	GI_34858213-S	ILMN_54171	RGD1562014_PREDICTED	XM_227869.3	XM_227869.3		295585	109465201	XM_227869.3	RGD1562014_predicted	XP_227869.2	ILMN_1375222	0004780619	S	891	ACTGTGGGAAAATTCCCTCTTCACAGACTGCACCCTTGTTGTAAGTGGGC	2	+	188807291-188807340	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1562014_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34858212-S	ILMN_54171	RGD1562014_PREDICTED	XM_227869.3	XM_227869.3		295585	109465201	XM_227869.3	RGD1562014_predicted	XP_227869.2	ILMN_1348893	0005700279	S	915	AGACTGCACCCTTGTTGTAAGTGGGCAGGAATTCAGAGCTCACAAAGCCA	2	+	188807315-188807364	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1562014_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664876-S	ILMN_264192	HMGB2L1_PREDICTED	XM_001060703.1	XM_001060703.1		307667	109508401	XM_001060703.1	Hmgb2l1_predicted	XP_001060703.1	ILMN_1359996	0006220358	S	1935	GCATACATCATGCCCGGACTGTGACCTCCAAGAAGCCTGGGACAGAAGAC				19p11	PREDICTED: Rattus norvegicus high mobility group box 2-like 1 (predicted) (Hmgb2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643452-S	ILMN_48535	POSTN_PREDICTED	XM_342245.3	XM_342245.3		361945	109464743	XM_342245.3	Postn_predicted	XP_342246.2	ILMN_1360313	0006650288	S	2883	GAAGAGGCTGGAAAAACCCAAAGCACACAGTTACCTTTCCATGGGAGGCT	2	+	143567948-143567997	2q26	PREDICTED: Rattus norvegicus periostin, osteoblast specific factor (predicted) (Postn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31795567-S	ILMN_296727	KIF15	NM_181635.2	NM_181635.2		353302	31795567	NM_181635.2	Kif15	NP_853666.1	ILMN_1373916	0005220010	S	3871	TCTGCCACAGAATGAGCGAGGAAGTTGAGCGAACCAGAACTTTGGAGTCC	8	+	127763721-127763770	8q32	Rattus norvegicus kinesin family member 15 (Kif15), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Knsl7	Knsl7
Rattus norvegicus	RefSeq	GI_62717746-S	ILMN_68530	LOC501212	XM_580174.1	XM_580174.1		501212	62717746	XM_580174.1	LOC501212	XP_580174.1	ILMN_1361922	0006900040	S	631	CTGGGGAATGTCAAGGAACACTGAAATGGTGGGCTACCTTACGACAGCCT					PREDICTED: Rattus norvegicus LOC501212 (LOC501212), mRNA.					
Rattus norvegicus	RefSeq	GI_56119119-S	ILMN_264475	SNF8	NM_001007804.1	NM_001007804.1		287645	56119119	NM_001007804.1	Snf8	NP_001007805.1	ILMN_1360344	0006380619	S	597	AGCCAGTCTTAAATGGGAGACGGAGCGAGCACGGCAAGTGCTGGAACACC	10	+	84760265-84760307:84761093-84761099	10q31	Rattus norvegicus SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		RGD1310144; MGC105799; D11moh34	RGD1310144; MGC105799; D11moh34
Rattus norvegicus	RefSeq	GI_13928701-S	ILMN_300753	CD200	NM_031518.1	NM_031518.1		24560	13928701	NM_031518.1	Cd200	NP_113706.1	ILMN_1365444	0001240097	S	1880	AGAGAAGGCAACTCTGGAATACAATCGCTTTGTTCTGAAGACATTTGTGG	11	+	56973923-56973972	11q21	Rattus norvegicus Cd200 molecule (Cd200), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cspmo2; MRCOX2; Mox2; MGC108657	Cspmo2; MRCOX2; Mox2; MGC108657
Rattus norvegicus	RefSeq	GI_62646160	ILMN_48457	LOC502671	XM_578168.1	XM_578168.1		502671	62646160	XM_578168.1	LOC502671	XP_578168.1	ILMN_1650221	0006860487	S	463	TCTGAGAGTCTGGTAAAGGTCCAGCAGGTCTGCCATCTTGCTCTCGGCGC					PREDICTED: Rattus norvegicus similar to RNA binding motif protein 8a (LOC502671), mRNA.					
Rattus norvegicus	RefSeq	GI_9507138-S	ILMN_298405	SPT1	NM_019171.1	NM_019171.1		29229	9507138	NM_019171.1	Spt1	NP_062044.1	ILMN_1362747	0007000609	S	248	CGCCTGCTGACCAGGATCAGGAAGATTCAGCATTGCTTGCATTGGTTAAC	7	-	142745523-142745543:142755157-142755185	7q36	Rattus norvegicus salivary protein 1 (Spt1), mRNA.					
Rattus norvegicus	RefSeq	GI_62650619-S	ILMN_68813	SNX13_PREDICTED	XM_343053.2	XM_343053.2		362731	62650619	XM_343053.2	Snx13_predicted	XP_343054.2	ILMN_1362695	0001230168	S	3694	CTCTCCTAGTGCCAGAGTGCCAGAGTGTATTGTAGGAAACAGCCCTTCCC				6q16	PREDICTED: Rattus norvegicus sorting nexin 13 (predicted) (Snx13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661139-S	ILMN_63061	ZFP312_PREDICTED	XM_223820.4	XM_223820.4		305719	109501369	XM_223820.4	Zfp312_predicted	XP_223820.1	ILMN_1361736	0001690524	S	2303	TTAATCCCAGCCTGTCACCATGAGCGCCCAGAAGAACGTGATGCCCCCAG	15	+	14354452-14354501	15p16	PREDICTED: Rattus norvegicus zinc finger protein 312 (predicted) (Zfp312_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659875-I	ILMN_53078	ENAH_PREDICTED	XM_573530.1	XM_573530.1		360891	62659875	XM_573530.1	Enah_predicted	XP_573530.1	ILMN_1375451	0005890142	S	1357	CTAGACTCTGTAACATACCCAGTGTCTCCACCGCCTACCTCAGGGCCAGC				13q26	PREDICTED: Rattus norvegicus enabled homolog (Drosophila) (predicted) (Enah_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660225	ILMN_55215	LOC501891	XM_577314.1	XM_577314.1		501891	62660225	XM_577314.1	LOC501891	XP_577314.1	ILMN_1650478	0004560563	S	746	CCAATAGAACAGGGGAGAGAGAGCACAAGAGCCTGATGACACCCTTGGTG					PREDICTED: Rattus norvegicus similar to CDNA sequence BC061212 (LOC501891), mRNA.					
Rattus norvegicus	RefSeq	GI_13591948-A	ILMN_263236	GATM	NM_031031.1	NM_031031.1		81660	13591948	NM_031031.1	Gatm	NP_112293.1	ILMN_1376665	0001580092	S	447	TTTATCAATGGAAGGCGTGACCGTGAAGCGGCCTGACCCCATTGACTGGT				3q35	Rattus norvegicus glycine amidinotransferase (L-arginine:glycine amidinotransferase) (Gatm), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]	The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence TAS]; The chemical reactions and pathways resulting in the formation of creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6601] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus [goid 46689] [evidence IDA]	Catalysis of the reversible transfer of an amidino group to an acceptor [goid 15067] [evidence IDA]; Catalysis of the reaction: L-arginine + glycine = L-ornithine + guanidinoacetate [goid 15068] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC93388	MGC93388
Rattus norvegicus	RefSeq	GI_62656551-S	ILMN_55474	RILP_PREDICTED	XM_213380.4	XM_213380.4		287531	109488544	XM_213380.4	Rilp_predicted	XP_213380.3	ILMN_1351683	0002680170	S	1206	ACTGTGCATGGATGTGTGACTTCAAATGAGGATGAGCCCTGCAACCCCCC	10	+	62834707-62834756	10q24	PREDICTED: Rattus norvegicus Rab interacting lysosomal protein (predicted) (Rilp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662211-S	ILMN_56241	LOC498578	XM_573854.1	XM_573854.1		498578	62662211	XM_573854.1	LOC498578	XP_573854.1	ILMN_1352936	0003450064	S	1172	TGGACAACCACCTCAGCTATAAGAGAACACCCACCTTGCCCTTCCGAGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430077A04 gene (LOC498578), mRNA.					
Rattus norvegicus	RefSeq	GI_55742722-S	ILMN_264183	DMGDH	NM_139102.2	NM_139102.2		245961	55742722	NM_139102.2	Dmgdh	NP_620802.2	ILMN_1364121	0002940142	S	2466	CCAGTTGAGCTCAGTGAAGTGGGACAACAAGTGGAGGTTGAACTACTGGG	2	+	24052247-24052296	2q12	Rattus norvegicus dimethylglycine dehydrogenase (Dmgdh), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid [goid 6546] [evidence IEA]; The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 19695] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 42426] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid [goid 6546] [evidence IEA]	Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein [goid 4047] [evidence IEA]; Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: N,N-dimethylglycine + acceptor + H2O = sarcosine + formaldehyde + reduced acceptor [goid 47865] [evidence IDA]; Catalysis of the reaction: N,N-dimethylglycine + acceptor + H2O = sarcosine + formaldehyde + reduced acceptor [goid 47865] [evidence TAS]; Catalysis of the reaction: N,N-dimethylglycine + acceptor + H2O = sarcosine + formaldehyde + reduced acceptor [goid 47865] [evidence IEA]; Catalysis of the reaction: N,N-dimethylglycine + acceptor + H2O = sarcosine + formaldehyde + reduced acceptor [goid 47865] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence TAS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein [goid 4047] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Me2GlyDH	Me2GlyDH
Rattus norvegicus	RefSeq	GI_62642203-S	ILMN_53551	HECTD2_PREDICTED	XM_220050.4	XM_220050.4		309514	109460077	XM_220050.4	Hectd2_predicted	XP_220050.4	ILMN_1361388	0006420161	S	2154	GGTTTGTGGAAGTCCTGAACTGGATATGCACGCACTGCAGAGGAGTACAC	1	+	240852479-240852528	1q53	PREDICTED: Rattus norvegicus HECT domain containing 2 (predicted) (Hectd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394138-S	ILMN_288711	RAB3IP	NM_017313.1	NM_017313.1		29885	8394138	NM_017313.1	Rab3ip	NP_059009.1	ILMN_1361957	0003940215	S	1057	CTGGAGGCCGTGGAGAACAACACTCTAAGCATCGAGCCGGTAGGGTTGCA	7	-	56235552-56235601	7q22	Rattus norvegicus RAB3A interacting protein (Rab3ip), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IPI]	RABIN3	RABIN3
Rattus norvegicus	RefSeq	GI_11968139-S	ILMN_300202	PRPSAP1	NM_022545.1	NM_022545.1		64390	11968139	NM_022545.1	Prpsap1	NP_071990.1	ILMN_1368936	0005220528	S	1399	CTAGTGTCTGCTCTGGGGAAGGCAGGTGAGGCGTTGAGCTTGGTCAGGGA	10	-	106582527-106582576	10q32.3	Rattus norvegicus phosphoribosyl pyrophosphate synthetase-associated protein 1 (Prpsap1), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence TAS]; The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9165] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4749] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Modulates the activity of an enzyme [goid 30234] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_34882990-S	ILMN_55452	LOC316825	XM_229258.2	XM_229258.2		316825	34882990	XM_229258.2	LOC316825	XP_229258.2	ILMN_1363079	0000430458	S	300	GTGAAAAATACCCATCTCGCAAGTGCCTTGGTTGCCCAAGCTGTGTAGCA					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC316825), mRNA.					
Rattus norvegicus	RefSeq	GI_13592046-S	ILMN_275144	RNPEP	NM_031097.1	NM_031097.1		81761	13592046	NM_031097.1	Rnpep	NP_112359.1	ILMN_1353071	0006040576	S	2017	CTCAAGTCAGCGTCCCGGAGTTTCTGTTCTCTGGGTTTGGGTCTCTGCCG	13	-	48268055-48268104	13q13	Rattus norvegicus arginyl aminopeptidase (aminopeptidase B) (Rnpep), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence NAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence NAS]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence NAS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648692-S	ILMN_263015	TMEM55A	NM_001024900.1	NM_001024900.1		362490	67846077	NM_001024900.1	Tmem55a	NP_001020071.1	ILMN_1365239	0003710341	S	1897	ACTTTGTGTGAGATTCGAGGACTCAGCCCTTGCACTGCCCAGTTTTGCGG	5	+	29376411-29376460	5q13	Rattus norvegicus transmembrane protein 55A (Tmem55a), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RGD1306225; MGC114565	RGD1306225; MGC114565
Rattus norvegicus	RefSeq	GI_62664590	ILMN_66265	LOC502178	XM_577636.1	XM_577636.1		502178	62664590	XM_577636.1	LOC502178	XP_577636.1	ILMN_1649915	0006450215	S	2512	TCCCAGGAAGCAGAAGCGGAACCCTGCCTCTCGTCTCACAGCCAGATAGA					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10213 (LOC502178), mRNA.					
Rattus norvegicus	RefSeq	GI_62643765-A	ILMN_296524	DAP3	NM_001011950.1	NM_001011950.1		295238	58865477	NM_001011950.1	Dap3	NP_001011950.1	ILMN_1376881	0000130044	S	1590	CCGACGGCACTGACGGACATGTGACAATGGGCTGTCCGGTTGTCCTACAA	2	-	180987457-180987506	2q34	Rattus norvegicus death associated protein 3 (Dap3), nuclear gene encoding mitochondrial protein, mRNA.	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes [goid 5761] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62079234-S	ILMN_291119	LOC365791	NM_001014252.1	NM_001014252.1		365791	62079234	NM_001014252.1	LOC365791	NP_001014274.1	ILMN_1366406	0002850170	S	925	ATGGGGGCTGTGTGCCCCACCATGACCAAGAATGCAGTGACCCAAGAGAT	2	+	138359658-138359707	2q26	Rattus norvegicus similar to T-cell activation Rho GTPase-activating protein isoform b (LOC365791), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_25742700-S	ILMN_293853	TNNT1	NM_134388.1	NM_134388.1		171409	25742700	NM_134388.1	Tnnt1	NP_599215.1	ILMN_1368338	0006020129	S	727	CAGTCATGCCCAGAAATTCCGAAAGGGGGCTGGGAAGGGTCGAGTTGGAG	1	+	68043355-68043372:68045007-68045038	1q12	Rattus norvegicus troponin T type 1 (skeletal, slow) (Tnnt1), mRNA.	A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IDA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IDA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]	A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IDA]; A process whereby force is generated within slow-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The slow-twitch skeletal muscle is characterized by slow time parameters, low force development and resistance to fatigue [goid 31444] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of muscle contraction [goid 45932] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence ISS]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence IDA]	Fang2	Fang2
Rattus norvegicus	RefSeq	GI_62641748-S	ILMN_277605	OVOL1_PREDICTED	XM_001070450.1	XM_001070450.1		309164	109463381	XM_001070450.1	Ovol1_predicted	XP_001070450.1	ILMN_1359274	0006400097	S	954	GCATATAAGGAGCGCCGGGCCAAGCTGTATGTGTGTGAGGAGTGTGGCTG				1q43	PREDICTED: Rattus norvegicus ovo-like 1(Drosophila) (predicted) (Ovol1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647731-I	ILMN_57841	TIA1_PREDICTED	XM_575591.1	XM_575591.1		312510	62647731	XM_575591.1	Tia1_predicted	XP_575591.1	ILMN_1375844	0001090433	S	2949	ACCTGTGTCTAAGCCAGTCCCCTTGTCCAACAGCCCAGGAAGACAGTCCC				4q34	PREDICTED: Rattus norvegicus cytotoxic granule-associated RNA binding protein 1 (predicted) (Tia1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14269567-S	ILMN_296864	LXN	NM_031655.1	NM_031655.1		59073	14269567	NM_031655.1	Lxn	NP_113843.1	ILMN_1362583	0003610619	S	802	GCACAACAGCCGCCTCCCAAAGGAAGCACCAGCAGAGTAAACAAGACCCC	2	-	157310257-157310267:157310268-157310306	2q31	Rattus norvegicus latexin (Lxn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence ISS]; The series of events involved in the perception of pain in which a sensory temperature stimulus is received by a cell and converted into a molecular signal [goid 50965] [evidence IEA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence ISS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence IEA]	MGC93322	MGC93322
Rattus norvegicus	RefSeq	GI_62666347-S	ILMN_70068	LOC502481	XM_577961.1	XM_577961.1		502481	62666347	XM_577961.1	LOC502481	XP_577961.1	ILMN_1358363	0004070022	S	492	ATGTCAGGAAGGGTTCACAGATGGCTACCGTGGCTGTACCTGCAAGGCCG					PREDICTED: Rattus norvegicus similar to CDNA sequence AK122525 (LOC502481), mRNA.					
Rattus norvegicus	RefSeq	GI_62667451-A	ILMN_272694	G6PDX	NM_017006.1	NM_017006.1		24377	8393380	NM_017006.1	G6pdx	NP_058702.1	ILMN_1376588	0002970563	S	2061	GATCAAGGACACCCATCTGAGAGGACCTGCCCATAGCCACACTAGCCTTA	X	+	160192222-160192271	Xq37	Rattus norvegicus glucose-6-phosphate dehydrogenase X-linked (G6pdx), mRNA.				G6pd	G6pd
Rattus norvegicus	RefSeq	GI_27465534-S	ILMN_296087	TUBB5	NM_173102.1	NM_173102.1		29214	27465534	NM_173102.1	Tubb5	NP_775125.1	ILMN_1370544	0002510162	S	2072	CCCCTGTGTTGGTTCTCCAAGGGACGTTGTATGGGGATTTGTGGGGGCAG	20	+	3064564-3064613	20p12	Rattus norvegicus tubulin, beta 5 (Tubb5), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart [goid 51225] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart [goid 51225] [evidence ISS]; Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart [goid 51225] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart [goid 51225] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664836-S	ILMN_266688	RGD1308848_PREDICTED	XM_001062833.1	XM_001062833.1		307657	109508428	XM_001062833.1	RGD1308848_predicted	XP_001062833.1	ILMN_1362369	0000430537	S	1466	GACGGAGTTTGCCTTGGACCTGTTTCTGTACTGCGGCTGTGAAGGCTGGG				19p12	PREDICTED: Rattus norvegicus similar to mKIAA1612 protein (predicted) (RGD1308848_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54019439-S	ILMN_302751	PCDHAC2	NM_201422.1	NM_201422.1		393092	54019439	NM_201422.1	Pcdhac2	NP_958825.1	ILMN_1364634	0006420121	S	2343	AGGCAATGGCTCCCTCACCAAGACCTACTGCTACAAGGCCTGCCTGACAG	18	+	29887027-29887076	18p11	Rattus norvegicus protocadherin alpha subfamily C, 2 (Pcdhac2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	rCNRvc2	rCNRvc2
Rattus norvegicus	RefSeq	GI_62664613-S	ILMN_50565	LOC498883	XM_574170.1	XM_574170.1		498883	62664613	XM_574170.1	LOC498883	XP_574170.1	ILMN_1374447	0000840086	S	2553	TCCTGGTCACCGGCAAGAGGAAACCAGCCAGCACTGAAGAAGGAGGATAG					PREDICTED: Rattus norvegicus similar to methyl-CpG binding protein MBD2 (LOC498883), mRNA.					
Rattus norvegicus	RefSeq	GI_27658989-S	ILMN_56344	RGD1308358_PREDICTED	XM_226397.2	XM_226397.2		291952	109508043	XM_226397.2	RGD1308358_predicted	XP_226397.1	ILMN_1370645	0002900672	S	1555	CTGCAACTGAACACCCAGCCTGCTGTGGGACGAATCCAGAAGGCCAGAAA	19	+	34890164-34890213	19q11	PREDICTED: Rattus norvegicus similar to 2210023G05Rik protein (predicted) (RGD1308358_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981119-S	ILMN_273448	KCNB1	NM_013186.1	NM_013186.1		25736	6981119	NM_013186.1	Kcnb1	NP_037318.1	ILMN_1359651	0007040086	S	3076	AGTATTCTGTGGTCCCTGGGGCTTTATTCGGAGACTCTGTCGGGGTGAGC	3	-	158250132-158250181	3q42	Rattus norvegicus potassium voltage gated channel, Shab-related subfamily, member 1 (Kcnb1), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IMP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IMP]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15271] [evidence IMP]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]	Shab; DRK1PC; Kcr1-1; Kv2.1	Shab; DRK1PC; Kcr1-1; Kv2.1
Rattus norvegicus	RefSeq	GI_62651336-S	ILMN_58486	LOC500734	XM_576113.1	XM_576113.1		500734	62651336	XM_576113.1	LOC500734	XP_576113.1	ILMN_1371172	0000510524	S	21	GGTTCTCCCATTCAGTAATCAGTACTGCAGCACTGCACAGACTCCTCACC					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC500734), mRNA.					
Rattus norvegicus	RefSeq	GI_62654277-S	ILMN_49126	TRAIP_PREDICTED	XM_345981.3	XM_345981.3		367167	109483948	XM_345981.3	Traip_predicted	XP_345982.2	ILMN_1365898	0000050129	S	1540	GACCTGGCCAACCGGAAGTGTTTTAGAAGATGGCTCCTCTTGGAACAGTC	8	+	113240253-113240302	8q32	PREDICTED: Rattus norvegicus TRAF-interacting protein (predicted) (Traip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666018	ILMN_276425	RGD1566244_PREDICTED	XR_007720.1	XR_007720.1		309788	109510165	XR_007720.1	RGD1566244_predicted		ILMN_1650512	0002370390	S	543	TGTGGGTGGAGTGGTGTATTCATTTGATGGTACGAAGGAAGCAGCGGCTG				20q11	PREDICTED: Rattus norvegicus similar to TatD DNase domain containing 1 (predicted) (RGD1566244_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47578010-S	ILMN_284430	OLR1073	NM_001000998.1	NM_001000998.1		405362	47578010	NM_001000998.1	Olr1073	NP_001000998.1	ILMN_2039056	0005420441	S	181	TTCTTCCTGTGCAACCTGTCCTTTGTGGACATCTGCCTAATCTCTACTAC	7	+	12016410-12016459	7q11	Rattus norvegicus olfactory receptor 1073 (Olr1073), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1073	Olr1073
Rattus norvegicus	RefSeq	GI_27661194-S	ILMN_274702	RHOD_PREDICTED	XM_001068895.1	XM_001068895.1		293660	109463345	XM_001068895.1	Rhod_predicted	XP_001068895.1	ILMN_1370827	0004070184	S	789	TTGACTGGGATGGACCTAGTCCCCAGGCTGAACTGGTAGAACCACACAGC				1q42	PREDICTED: Rattus norvegicus ras homolog gene family, member D (predicted) (Rhod_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662841-A	ILMN_278448	LETM2	NM_001012158.1	NM_001012158.1		361169	58865887	NM_001012158.1	Letm2	NP_001012158.1	ILMN_1376958	0000360180	S	1352	CCCCCCGAGTCAAAGGAGGACATTACGGACCCTGCACCTCAGCTAAATGG	16	+	70865235-70865284	16q12.4	Rattus norvegicus leucine zipper-EF-hand containing transmembrane protein 2 (Letm2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62663946	ILMN_62524	LOC498802	XM_579871.1	XM_579871.1		498802	62663946	XM_579871.1	LOC498802	XP_579871.1	ILMN_1650343	0002030181	S	2532	CTGCGGCTCAAGGACAAGACCGAAGAAAGGGACGGACTGAGGGATGCTGC					PREDICTED: Rattus norvegicus LOC498802 (LOC498802), mRNA.					
Rattus norvegicus	RefSeq	GI_62667379-S	ILMN_280329	RGD1565967_PREDICTED	XM_001069533.1	XM_001069533.1		302819	109512630	XM_001069533.1	RGD1565967_predicted	XP_001069533.1	ILMN_1366930	0000050687	S	2562	GTGCAGTTTTGCTCAGGACATGCCAACGGGGAAACCTCAAGTGTAAGCCT				Xq36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30058 (predicted) (RGD1565967_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981713-S	ILMN_292344	SLC30A2	NM_012890.1	NM_012890.1		25362	6981713	NM_012890.1	Slc30a2	NP_037022.1	ILMN_1350151	0003140500	S	1330	GCTCACACCACAGCTGGAGAGACACTGAGGCGCAGAAAGGGATTTTGGGG	5	+	153096871-153096920	5q36	Rattus norvegicus solute carrier family 30 (zinc transporter), member 2 (Slc30a2), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IDA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]	Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]	ZnT-2; Znt2	ZnT-2; Znt2
Rattus norvegicus	RefSeq	GI_9507210-S	ILMN_270935	TSX	NM_019203.1	NM_019203.1		29391	9507210	NM_019203.1	Tsx	NP_062076.1	ILMN_1368901	0003060066	S	211	TAAGCAGGAAGATGAGCCACTGGGCCACACCGAATTTCTTCGCCTGCAAG	X	+	91400312-91400335:91401419-91401444	Xq31	Rattus norvegicus testis specific X-linked gene (Tsx), mRNA.					
Rattus norvegicus	RefSeq	GI_62667480-S	ILMN_64853	MCF2_PREDICTED	XM_229172.4	XM_229172.4		317598	109511290	XM_229172.4	Mcf2_predicted	XP_229172.3	ILMN_1356415	0004480397	S	2973	AACCCAGCAGGATCAGTTAAGCGACCAGGACCAACTTCCTCCCCAGCAGC	X	-	145600812-145600861	Xq36	PREDICTED: Rattus norvegicus mcf.2 transforming sequence (predicted) (Mcf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651602-S	ILMN_49852	LOC503107	XM_578627.1	XM_578627.1		503107	62651602	XM_578627.1	LOC503107	XP_578627.1	ILMN_1364096	0002940019	S	142	GTAGTGGTCATTGCTGGCACTGGATCTGTCAGCTCCCATGGAAGGGTGTC					PREDICTED: Rattus norvegicus similar to Igh-1a_predicted protein (LOC503107), mRNA.					
Rattus norvegicus	RefSeq	GI_6981045-S	ILMN_266722	EIF2AK1	NM_013223.1	NM_013223.1		27137	6981045	NM_013223.1	Eif2ak1	NP_037355.1	ILMN_1363072	0001940309	S	1850	CGCAGGACAAAGGGCTGAAGAGATGAGAGGGAAATGGGGGCCTACCTGTG	12	-	11039367-11039391:11039392-11039416	12p11	Rattus norvegicus eukaryotic translation initiation factor 2 alpha kinase 1 (Eif2ak1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus [goid 9605] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of translational initiation [goid 45947] [evidence TAS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 46986] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence IDA]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence ISS]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Hri	Hri
Rattus norvegicus	RefSeq	GI_62644212-S	ILMN_64795	HRMT1L6_PREDICTED	XM_227607.2	XM_227607.2		295384	62644212	XM_227607.2	Hrmt1l6_predicted	XP_227607.1	ILMN_1375018	0006220332	S	1408	AACTGCAGGGGTGGGGGCAGTAAACGCGAGATTATAATTGGTCCACGCGC				2q41	PREDICTED: Rattus norvegicus HMT1 hnRNP methyltransferase-like 6 (S. cerevisiae) (predicted) (Hrmt1l6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527248-S	ILMN_267358	FASTKD2	NM_001009673.1	NM_001009673.1		301463	57527248	NM_001009673.1	Fastkd2	NP_001009673.1	ILMN_1358502	0002510195	S	1893	TCTGCCACAAACATGCAGAGAGTGGCCGTGCTGTGTGTTCCTAAGTCTGC	9	+	62435869-62435888:62437359-62437388	9q32	Rattus norvegicus FAST kinase domains 2 (Fastkd2), mRNA.		A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94943	MGC94943
Rattus norvegicus	Unigene	Rn.16728	ILMN_161324	RN.16728	Rn.16728		Rn.16728		41112374	CK599238			ILMN_1530280	0001500097	S	429	CATGTATAGAGGCAAAACGCCAATGTGCATAAAATAATAAAATGAATGGA					AGENCOURT_17897090 NIH_MGC_234 Rattus norvegicus cDNA clone IMAGE:7192496 5', mRNA					
Rattus norvegicus	RefSeq	GI_62662392-S	ILMN_266681	ABHD8_PREDICTED	XM_001064743.1	XM_001064743.1		306338	109503894	XM_001064743.1	Abhd8_predicted	XP_001064743.1	ILMN_1355841	0000730064	S	1846	CCTCCTATCCAGTCCTGGGAGACCTTATCGCACCATCCCCATTGCTTGGG				16p14	PREDICTED: Rattus norvegicus abhydrolase domain containing 8 (predicted) (Abhd8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650032-S	ILMN_60161	PGD	XM_342979.2	XM_342979.2		362660	62650032	XM_342979.2	Pgd	XP_342980.2	ILMN_1353729	0002120463	S	1796	GGTTGTACAGCCGGACCGTGGATCATGAGTGTGGGTTCTGATGTCCTACA					PREDICTED: Rattus norvegicus phosphogluconate dehydrogenase (Pgd), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses [goid 6098] [evidence IDA]; The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses [goid 6098] [evidence IEA]; The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH [goid 6739] [evidence IDA]; The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2) [goid 9051] [evidence IMP]; The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2) [goid 9051] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule [goid 19322] [evidence ISS]; The chemical reactions and pathways involving D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose [goid 19521] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+ [goid 4616] [evidence IEA]; Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+ [goid 4616] [evidence ISS]; Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+ [goid 4616] [evidence IDA]; Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+ [goid 4616] [evidence IEA]; Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+ [goid 4616] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IDA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IDA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_35902695-S	ILMN_298543	ACCN1	NM_001034014.1	NM_001034014.1		25364	77404414	NM_001034014.1	Accn1	NP_001029186.1	ILMN_1374689	0006510112	S	1652	TGCAGACAGCTTTGGGCACCCTGGAGGAGATTGCCTGCTGACACCTCTCA	10	-	69103381-69103430	10q26	Rattus norvegicus amiloride-sensitive cation channel 1, neuronal (Accn1), transcript variant 2, mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence TAS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IPI]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The series of events required to receive a sour taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50915] [evidence TAS]; The series of events in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50974] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15280] [evidence IMP];  [goid 15280] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 15280] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	MDEG2; MDEG1	MDEG2; MDEG1
Rattus norvegicus	RefSeq	GI_22219437-S	ILMN_262385	ST6GAL1	NM_147205.1	NM_147205.1		25197	22219437	NM_147205.1	St6gal1	NP_671738.1	ILMN_1365332	0002630435	S	2965	TGGGCCACGGAGGTATGAGGGCATCACTGTTAGTTTGGTGAGGTGGTTAG	11	-	79723489-79723538	11q23	Rattus norvegicus beta galactoside alpha 2,6 sialyltransferase 1 (St6gal1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence ISS]; Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-acetyl-beta-D-glucosamine = CMP + alpha-N-acetylneuraminyl-2,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine [goid 3835] [evidence IEA]	Siat1	Siat1
Rattus norvegicus	RefSeq	GI_62645343-S	ILMN_54174	LOC499822	XM_575161.1	XM_575161.1		499822	62645343	XM_575161.1	LOC499822	XP_575161.1	ILMN_1356686	0005700022	S	133	CCTGCGACAGATCGGCCCAACAGGCTTCCTACTGACGGACTATTAATTAG					PREDICTED: Rattus norvegicus similar to Zinc finger, SWIM domain containing 2 (predicted) (LOC499822), mRNA.					
Rattus norvegicus	RefSeq	GI_62646694-S	ILMN_54087	LOC499982	XM_575336.1	XM_575336.1		499982	62646694	XM_575336.1	LOC499982	XP_575336.1	ILMN_1371690	0000630086	S	3044	GCAGCACGCTCTGCAGACAGCATCCCCTTGTTTGTTAGGATACTCCGAGT					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499982), mRNA.					
Rattus norvegicus	RefSeq	GI_62641438-S	ILMN_63357	RGD1559500_PREDICTED	XM_577832.2	XM_577832.2		365349	109459236	XM_577832.2	RGD1559500_predicted	XP_577832.2	ILMN_1354828	0001240341	S	160	GAAAGCTCCGCAGCGGTGAAGCTAGCAGTATGTAGATGTAGCTTCTACGG	1	-	167829403-167829452	1q33	PREDICTED: Rattus norvegicus similar to nidogen 2 protein (predicted) (RGD1559500_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758951-S	ILMN_288760	NKX2-5	NM_053651.1	NM_053651.1		114109	16758951	NM_053651.1	Nkx2-5	NP_446103.1	ILMN_1362482	0001850170	S	1087	CACCTTTAGGAGAAGGGCGATGACTCCGGGGATGGAAAGGCTCCCACTGT	10	+	16608701-16608750	10q12	Rattus norvegicus NK2 transcription factor related, locus 5 (Drosophila) (Nkx2-5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence ISS]; The characteristic morphogenetic movements where the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceeding their future integration [goid 1947] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence ISS]; The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure [goid 35050] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence ISS]; The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure [goid 48738] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence IEA]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]	Nkx2.5; Csx	Nkx2.5; Csx
Rattus norvegicus	RefSeq	GI_62078764-S	ILMN_278130	ZFP819	NM_001014017.1	NM_001014017.1		308561	62078764	NM_001014017.1	Zfp819	NP_001014039.1	ILMN_1357914	0005130398	S	2001	GGCTTCCTGCGCAAGTCACAGTTGTCGTCTCACCAACAAACTCACCCTGG	1	+	94019219-94019268	1q22	Rattus norvegicus zinc finger protein 819 (Zfp819), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61557217-S	ILMN_301606	CABC1	NM_001013185.1	NM_001013185.1		360887	61557217	NM_001013185.1	Cabc1	NP_001013203.1	ILMN_1359299	0002480632	S	2241	GGCCATGCAGAGTGAATTGTGTGTTTCTGGGTGAGCTTATGTCCCTGCCC	13	-	95869575-95869624	13q26	Rattus norvegicus chaperone, ABC1 activity of bc1 complex homolog (S. pombe) (Cabc1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109473	MGC109473
Rattus norvegicus	RefSeq	GI_62657934-S	ILMN_267574	GTF2E1	XM_001062046.1	XM_001062046.1		303918	109494362	XM_001062046.1	Gtf2e1	XP_001062046.1	ILMN_1356667	0001580142	S	2162	GGGTTGAAGAACAGAGAGCACTGGGAACCAAGCCTTATGCTGCGTCTGGT				11q21-q22	PREDICTED: Rattus norvegicus general transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH [goid 5673] [evidence IEA]	Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62644786-S	ILMN_281023	RGD1304868_PREDICTED	XR_009138.1	XR_009138.1		296550	109469521	XR_009138.1	RGD1304868_predicted		ILMN_1351912	0002570731	S	1261	TCACCCTCAGTCAAGAGGAGTGGTCTTAGCCGCCGCCCTAGTGGACACAA				3p13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810443J12 (predicted) (RGD1304868_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660380-S	ILMN_275103	PDGFRA	XM_001067631.1	XM_001067631.1		25267	109500450	XM_001067631.1	Pdgfra	XP_001067631.1	ILMN_1355008	0005080731	S	5735	AGCTTCTCAGACCGACAGTTTTCCCATCCCTACCAGTACTTGCCTCTGAG				14p11	PREDICTED: Rattus norvegicus platelet derived growth factor receptor, alpha polypeptide, transcript variant 2 (Pdgfra), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form [goid 9653] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence IEP]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence NAS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 5018] [evidence IDA];  [goid 5018] [evidence TAS];  [goid 5018] [evidence ISS]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IEA]; Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence NAS]; Interacting selectively with platelet-derived growth factor [goid 48407] [evidence ISS]		
Rattus norvegicus	Unigene	Rn.48866	ILMN_160800	RN.48866	Rn.48866		Rn.48866		82511495	DV718172			ILMN_1530531	0004560112	S	30	ATGCCTACCAAAGACATGCGTAGTAAACCTTCTATTTCCAAATTATTCAA					RVL8762 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62666734-S	ILMN_264687	FGD1	NM_001037546.1	NM_001037546.1		363460	82830402	NM_001037546.1	Fgd1	NP_001032635.1	ILMN_1367502	0002570161	S	2538	CTGTCTGAGGACAAGGAGATGGAGGAGACAACAGTGGCAGCTTCAGGAGC	X	+	40406490-40406539	Xq21	Rattus norvegicus FYVE, RhoGEF and PH domain containing 1 (Fgd1), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; Any process that modulates the activity of the GTPase Cdc42 [goid 43088] [evidence ISS]; Any process that modulates the activity of the GTPase Cdc42 [goid 43088] [evidence IEA]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence ISS]; The assembly of a filopodium, a very long microspike extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or by the growth cone of a developing nerve cell axon [goid 46847] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence ISS]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652021-S	ILMN_48469	PCTK2	XM_235049.3	XM_235049.3		314743	62652021	XM_235049.3	Pctk2	XP_235049.3	ILMN_1373247	0005360041	S	3202	GTCTGGCAAATGCTTGCTGCAGGGCTCATCCTGTGGTTAACTTGCAGTCC				7q13	PREDICTED: Rattus norvegicus PCTAIRE-motif protein kinase 2 (Pctk2), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658038-S	ILMN_282847	RGD1306927_PREDICTED	XM_001053714.1	XM_001053714.1		288026	109494583	XM_001053714.1	RGD1306927_predicted	XP_001053714.1	ILMN_1355012	0007040364	S	4025	GAAGCAAGGGTTGCCATGAGCCAAAAGATGGGCAGGTATCAGGAGGAGAG				11q22	PREDICTED: Rattus norvegicus similar to 9330174J19Rik protein (predicted) (RGD1306927_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742839-S	ILMN_288426	HBG1	NM_172093.1	NM_172093.1		94164	25742839	NM_172093.1	Hbg1	NP_742090.1	ILMN_1354957	0006770735	S	340	GTCCTTTCTACTCATTTTGCCAAGGAATTCACCCCAGAGGTGCAGGCTGC	1	-	161640413-161640462	1q32	Rattus norvegicus hemoglobin, gamma A (Hbg1), mRNA.	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IDA]; An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a hemoglobin alpha chain [goid 31721] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hbb-y; Hbe1	Hbb-y; Hbe1
Rattus norvegicus	RefSeq	GI_62658744-S	ILMN_66529	RGD1561258_PREDICTED	XM_577243.2	XM_577243.2		501831	109495554	XM_577243.2	RGD1561258_predicted	XP_577243.2	ILMN_1352665	0004570563	S	172	AAAGCACGCCAGACCATGGCACCCAGAAGAGCCCGGAAGAGAGTAGAAGG	12	-	21091235-21091267:21095117-21095133	12q12	PREDICTED: Rattus norvegicus similar to myosin light chain 2, precursor lymphocyte-specific (predicted) (RGD1561258_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31077143-S	ILMN_298155	CAND2	NM_181362.1	NM_181362.1		192226	31077143	NM_181362.1	Cand2	NP_852027.1	ILMN_1357233	0000460497	S	4008	CCTACTTCACTTGCTCTGGCCTCCAAATGTCAATTAGCACCCTGGGCCTG	4	+	151940433-151940482	4q42	Rattus norvegicus cullin-associated and neddylation-dissociated 2 (putative) (Cand2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence IDA]; Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence ISS]; Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence IEA]; Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Tip120B	Tip120B
Rattus norvegicus	RefSeq	GI_62660828-S	ILMN_266358	LOC681549	XM_001057376.1	XM_001057376.1		681549	109501035	XM_001057376.1	LOC681549	XP_001057376.1	ILMN_1353667	0006450097	S	458	TGTCACCCCCTCATTGGTTCACCAGTCCCACGATGAGCAAAGACTCAGCC					PREDICTED: Rattus norvegicus similar to Protein transport protein SEC61 gamma subunit (LOC681549), mRNA.					
Rattus norvegicus	RefSeq	GI_62663312-S	ILMN_288177	RGD1563503_PREDICTED	XR_007388.1	XR_007388.1		498716	109505539	XR_007388.1	RGD1563503_predicted		ILMN_1370774	0000060279	S	559	GAACCTCTTGCCCTCAACAGCGTTCCTCTGCACAGAACACACCAGAAGTC				17p14	PREDICTED: Rattus norvegicus similar to ribosomal protein L6 (predicted) (RGD1563503_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663224-S	ILMN_272409	ZFP346_PREDICTED	XM_001067107.1	XM_001067107.1		306765	109505417	XM_001067107.1	Zfp346_predicted	XP_001067107.1	ILMN_1372902	0004070136	S	845	GGGAGCCAGATGCCAGTGCAAACACAACCCACTCCAAAGGACTCAAGCAC				17p14	PREDICTED: Rattus norvegicus zinc finger protein 346 (predicted) (Zfp346_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648830-S	ILMN_275206	RGD1306576_PREDICTED	XM_001068867.1	XM_001068867.1		298002	109476388	XM_001068867.1	RGD1306576_predicted	XP_001068867.1	ILMN_1365897	0002970041	S	439	GTACTGCTTAGTCGGGACCCCTTGGACCCCAGTGAATGTGGCTACCAACC				5q22	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1306576_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113796-S	ILMN_275458	V1RC36	NM_001008924.1	NM_001008924.1		494273	57113796	NM_001008924.1	V1rc36	NP_001008924.1	ILMN_1373535	0003870497	S	461	TTGACCAGATGCAGGTTACTAAGTCCTGCTCAATCTTCCGCATGAACTCC	4	+	86626367-86626416	4q24	Rattus norvegicus vomeronasal 1 receptor, C36 (V1rc36), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650954-S	ILMN_62771	LOC500687	XM_580105.1	XM_580105.1		500687	62650954	XM_580105.1	LOC500687	XP_580105.1	ILMN_1351690	0006110239	S	952	AGTGGCGACATCTGGGCAAGTGGACCAAGTGATGTGTGCCTGATCTACCT					PREDICTED: Rattus norvegicus LOC500687 (LOC500687), mRNA.					
Rattus norvegicus	RefSeq	GI_27465532-S	ILMN_267927	MYO1E	NM_173101.1	NM_173101.1		25484	27465532	NM_173101.1	Myo1e	NP_775124.1	ILMN_1355707	0004010091	S	4142	CACTAAGACTGCTGGTGGGGAGGAAGTTGGGTGCTGGGCTGACTGATGGT				8q24	Rattus norvegicus myosin IE (Myo1e), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MYR5; Myr3	MYR5; Myr3
Rattus norvegicus	RefSeq	GI_62649071-S	ILMN_55761	RGD1562123_PREDICTED	XM_342840.3	XM_342840.3		362522	109474917	XM_342840.3	RGD1562123_predicted	XP_342841.3	ILMN_1359757	0002100671	S	5917	GAAGTGCATCCAACGCTCCGGGCCATCTGTAACCACCTCCGGAAACACGT	5	+	72175134-72175183	5q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1562123_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652614-S	ILMN_55102	GSDMDC1_PREDICTED	XM_235434.4	XM_235434.4		315084	109480913	XM_235434.4	Gsdmdc1_predicted	XP_235434.4	ILMN_1364932	0001570647	S	1586	TCCTTGGGGACAGCTGGGATGAGGAGGCTCTCACCTGGGTCTTGCTAGAA	7	+	113836675-113836724	7q34	PREDICTED: Rattus norvegicus gasdermin domain containing 1 (predicted) (Gsdmdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644952-S	ILMN_57290	LOC499781	XM_575114.2	XM_575114.2		499781	109468057	XM_575114.2	LOC499781	XP_575114.2	ILMN_1370598	0003360397	S	1625	GCCTATCCAAAGACAGCCGACTCATCGCCCAGACATCCAAGCAAGGGGCT	3	-	11752463-11752497:11752628-11752642	3p11	PREDICTED: Rattus norvegicus similar to CG17122-PA (LOC499781), mRNA.					
Rattus norvegicus	RefSeq	GI_62663160-S	ILMN_267896	LOC682869	XM_001061265.1	XM_001061265.1		682869	109505363	XM_001061265.1	LOC682869	XP_001061265.1	ILMN_1352204	0000460167	S	1789	AGCAGCTCAACACTGCTGCACACTGACTCCCCCATCAATGGCCTGGAGAG					PREDICTED: Rattus norvegicus similar to Golgi phosphoprotein 2 (Golgi membrane protein GP73), transcript variant 2 (LOC682869), mRNA.					
Rattus norvegicus	RefSeq	GI_47059001-S	ILMN_278472	SLC4A5	NM_212512.1	NM_212512.1		297386	47059001	NM_212512.1	Slc4a5	NP_997677.1	ILMN_1374142	0002650215	S	3269	CAGGAAGAAGAGGAGGAAAGAGGTCCACGAGAACACGGACAAGGAGCCCC	4	+	117508300-117508345:117511109-117511112	4q34	Rattus norvegicus solute carrier family 4, sodium bicarbonate cotransporter, member 5 (Slc4a5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence TAS]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence TAS];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	NBC4	NBC4
Rattus norvegicus	RefSeq	GI_62641577-S	ILMN_302030	LOC293589	XM_001057124.1	XM_001057124.1		293589	109459546	XM_001057124.1	LOC293589	XP_001057124.1	ILMN_1353037	0006420095	S	1453	TGCTGGGGAAGCCACACATCGGACATTTTATTCTACCACACACGGAGCCC	1	+	199934616-199934665	1q41	PREDICTED: Rattus norvegicus putative GTP-binding protein, transcript variant 4 (LOC293589), mRNA.					
Rattus norvegicus	RefSeq	GI_62662281-S	ILMN_60190	LOC306324	XM_224699.3	XM_224699.3		306324	62662281	XM_224699.3	LOC306324	XP_224699.3	ILMN_1367593	0000510156	S	2246	ATCTGTCCTTACCGTTCAGGGATTGAGTGCTGCCTTCAGTTACTTACCGC				16p14	PREDICTED: Rattus norvegicus similar to tetraspanin similar to TM4SF9 (predicted) (LOC306324), mRNA.					
Rattus norvegicus	RefSeq	GI_13591935-S	ILMN_281137	DBN1	NM_031024.1	NM_031024.1		81653	13591935	NM_031024.1	Dbn1	NP_112286.1	ILMN_1354608	0004120292	S	2502	TCACCCTGCTTGGGACCTGGTGGGGGTCGGGGGTTCTGGTGGGAAAATGT	17	+	15208483-15208532	17p14	Rattus norvegicus drebrin 1 (Dbn1), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]	Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin [goid 5522] [pmid 9473484] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_34870125-S	ILMN_263346	CD209A_PREDICTED	XM_221778.2	XM_221778.2		288375	34870125	XM_221778.2	Cd209a_predicted	XP_221778.2	ILMN_1361846	0002260133	S	498	CACTTGGATGGGGCTCATAGACATCAACAAGGAATCTACATGGCACTGGG	12	+	2362257-2362306	12p12	PREDICTED: Rattus norvegicus CD209a antigen (predicted) (Cd209a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650610-A	ILMN_267720	SPG3A	NM_001009831.2	NM_001009831.2		362750	58743308	NM_001009831.2	Spg3a	NP_001009831.1	ILMN_1376276	0002570010	S	1806	GCAGCAGCAACCCACAGACACCTGTATCAGCAAGCCTTTCCTGCACCCAA	6	+	92076885-92076934	6q24	Rattus norvegicus spastic paraplegia 3A homolog (human) (Spg3a), mRNA.			Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109404	MGC109404
Rattus norvegicus	RefSeq	GI_62646100-S	ILMN_68365	RGD1559748_PREDICTED	XM_230758.4	XM_230758.4		311559	109469072	XM_230758.4	RGD1559748_predicted	XP_230758.4	ILMN_1366094	0000780541	S	626	GGAGCCGTCTGGTCATTGGTGACTGTATTTACCCTCCTGGCAGCTTGCGT	3	+	144551468-144551517	3q41	PREDICTED: Rattus norvegicus similar to Palate lung and nasal carcinoma-like protein precursor (Tongue plunc-like protein) (predicted) (RGD1559748_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639236-S	ILMN_287573	SUPT5H	XM_001078198.1	XM_001078198.1		308472	109461571	XM_001078198.1	Supt5h	XP_001078198.1	ILMN_1354605	0006130041	S	3303	GGACCGAGAGGCTACCGGGGTCCTTCTGAGTATTGATGGTGAGGATGGCA				1q21	PREDICTED: Rattus norvegicus suppressor of Ty 5 homolog (S. cerevisiae) (Supt5h), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Any activity that decreases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 8148] [evidence ISS]; Any activity that decreases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 8148] [evidence IEA]; Any activity that increases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 8159] [evidence ISS]; Any activity that increases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 8159] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650525-S	ILMN_264410	RRM2	NM_001025740.1	NM_001025740.1		362720	71043759	NM_001025740.1	Rrm2	NP_001020911.1	ILMN_1368089	0005420408	S	1213	GCTGACTTCTAAGCAACCGATCCGTGTGCTCTTTGCTGATTATTCTCCCC	6	+	42355418-42355429:42355430-42355467	6q16	Rattus norvegicus ribonucleotide reductase M2 (Rrm2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a glycosamine consisting of a base linked to a deoxyribose sugar esterified with diphosphate on its glycose moiety [goid 9186] [evidence IEA]; The chemical reactions and pathways involving a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 9262] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 9263] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin [goid 4748] [evidence IEA]; Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin [goid 4748] [evidence ISS]; Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin [goid 4748] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC116120; Rrm2	MGC116120; Rrm2
Rattus norvegicus	RefSeq	GI_62645986-S	ILMN_285365	RGD1307071_PREDICTED	XM_001055449.1	XM_001055449.1		311502	109470951	XM_001055449.1	RGD1307071_predicted	XP_001055449.1	ILMN_1369534	0003440300	S	1891	GGCGGCAGCACGTTCAAGACAAAGACAGCCCACAAAATCGCCTCGGAAGC				3q41	PREDICTED: Rattus norvegicus similar to uncharacterized hypothalamus protein HT013 (predicted) (RGD1307071_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665466-S	ILMN_289325	RGD1306091_PREDICTED	XR_009534.1	XR_009534.1		307950	109509075	XR_009534.1	RGD1306091_predicted		ILMN_1365852	0000510600	S	2989	CTGCCCCGCCACAAAGGCCACAGACTGCTTCATTGAGGACAACACCTCCA				19q12	PREDICTED: Rattus norvegicus similar to Mixed lineage kinase 4 (predicted) (RGD1306091_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641479	ILMN_65220	RMT1	XM_579671.1	XM_579671.1		246306	62641479	XM_579671.1	Rmt1	XP_579671.1	ILMN_1650972	0003990100	S	4149	TGGGCTCAGCATAGCGCTGGCCTACAGGTGGATTGGGTCTGGGAGTCAGA				1q42	PREDICTED: Rattus norvegicus mammary cancer associated protein RMT-1 (Rmt1), mRNA.					
Rattus norvegicus	RefSeq	GI_27662773-S	ILMN_54381	LOC288501	XM_213721.1	XM_213721.1		288501	27662773	XM_213721.1	LOC288501	XP_213721.1	ILMN_1374523	0004670750	S	584	AGGACCCTCAGACCCTTTGTCTGTAGCACAGTCGTGGATGGCATCGGGGA					PREDICTED: Rattus norvegicus similar to hypothetical gene supported by AF226663 (predicted) (LOC288501), mRNA.					
Rattus norvegicus	RefSeq	GI_62639879-S	ILMN_266720	RGD1305344_PREDICTED	XM_001080349.1	XM_001080349.1		308557	109461813	XM_001080349.1	RGD1305344_predicted	XP_001080349.1	ILMN_1363775	0006510368	S	583	ACAGTGAATTATCCCCCGACCATCACGGATGTGACCAGCGCGCGTACCGC				1q22	PREDICTED: Rattus norvegicus similar to Opioid binding protein/cell adhesion molecule precursor (OBCAM) (Opioid-binding cell adhesion molecule) (OPCML) (predicted) (RGD1305344_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662479-S	ILMN_288316	LOC689753	XM_001071886.1	XM_001071886.1		689753	109503250	XM_001071886.1	LOC689753	XP_001071886.1	ILMN_1369365	0004010390	S	4176	GGAATCTTCTTTTACCCCTGACGTAGAAGAAGGTCTGCCTGCTACTCAGG	16	+	20826657-20826706	16p14	PREDICTED: Rattus norvegicus similar to K06A9.1b (LOC689753), mRNA.					
Rattus norvegicus	RefSeq	GI_62647157-S	ILMN_272640	BRAF	XM_001070228.1	XM_001070228.1		114486	109473379	XM_001070228.1	Braf	XP_001070228.1	ILMN_1358239	0006650215	S	2592	TCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAG				4q22	PREDICTED: Rattus norvegicus v-raf murine sarcoma viral oncogene homolog B1 (Braf), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IMP]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IMP]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IDA];  [goid 5057] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IMP]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62661404-S	ILMN_63063	LOC290098	XM_224053.2	XM_224053.2		290098	62661404	XM_224053.2	LOC290098	XP_224053.2	ILMN_1366683	0005910162	S	368	TGCTGTACACAAACCTTCAGCAGAGTGGGGTGAGTGGCCAGCAGGAGAGA					PREDICTED: Rattus norvegicus similar to T cell receptor V-alpha J-alpha (LOC290098), mRNA.					
Rattus norvegicus	RefSeq	GI_16758881-S	ILMN_265549	LOC686415	XM_001074006.1	XM_001074006.1		686415	109484768	XM_001074006.1	LOC686415	XP_001074006.1	ILMN_1369878	0001690369	S	132	GGGCAAACGCCAGGTCCTCATCAGGCCGTGTTCCAAAGTCATCGTTCGGT					PREDICTED: Rattus norvegicus similar to ribosomal protein S15a (LOC686415), mRNA.					
Rattus norvegicus	RefSeq	GI_47576436-S	ILMN_301631	OLR1588	NM_001000082.1	NM_001000082.1		289250	47576436	NM_001000082.1	Olr1588	NP_001000082.1	ILMN_1366523	0002060026	S	372	GGCCATCTGCCGACCCCTCCACTACCCTTCAATTATGACTACAGCACTCT	13	+	89821625-89821674	13q24	Rattus norvegicus olfactory receptor 1588 (Olr1588), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1588	Olr1588
Rattus norvegicus	RefSeq	GI_62648067-S	ILMN_50618	LOC362424	XM_342744.2	XM_342744.2		362424	62648067	XM_342744.2	LOC362424	XP_342745.2	ILMN_1353860	0005130072	S	1657	ATGGGACTGCCCCCTCTCTTGGGCCTGGAAGATCAGTTAATCCTGAAGTA				4q42	PREDICTED: Rattus norvegicus LOC362424 (predicted) (LOC362424), mRNA.					
Rattus norvegicus	RefSeq	GI_62649579-S	ILMN_59447	LOC500542	XM_575903.1	XM_575903.1		500542	62649579	XM_575903.1	LOC500542	XP_575903.1	ILMN_1353021	0006760603	S	597	CTGACTGCCAGAGTCCCTTGCCCACATCAGGGTTCACTTCCACATCTGAA					PREDICTED: Rattus norvegicus similar to novel protein (LOC500542), mRNA.					
Rattus norvegicus	RefSeq	GI_62638764-S	ILMN_65480	LOC502277	XM_577738.1	XM_577738.1		502277	62638764	XM_577738.1	LOC502277	XP_577738.1	ILMN_1369324	0005130497	S	75	AGCCAGGACACATTAACTACAGTGGAGGGAGAGAATCCTGTGCCAGATGG					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502277), mRNA.					
Rattus norvegicus	RefSeq	GI_47577484-S	ILMN_280729	OLR606	NM_001000927.1	NM_001000927.1		405246	47577484	NM_001000927.1	Olr606	NP_001000927.1	ILMN_1349870	0006400010	S	711	CTCTACTTGTGCTTCTCACCTGACAGTAATCACCATTTATCATGGCACCC	3	+	71871545-71871594	3q24	Rattus norvegicus olfactory receptor 606 (Olr606), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr606	Olr606
Rattus norvegicus	RefSeq	GI_12018323-S	ILMN_267170	WNT5A	NM_022631.1	NM_022631.1		64566	12018323	NM_022631.1	Wnt5a	NP_072153.1	ILMN_1356340	0006650180	S	1730	CAGAGTCCTATGAGATGGGTGGTATCCTGGTGAAAGAGGTGGTACAGACC	16	+	3799374-3799423	16p16	Rattus norvegicus wingless-related MMTV integration site 5A (Wnt5a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62638712-S	ILMN_63009	LOC365135	XM_577718.1	XM_577718.1		365135	62638712	XM_577718.1	LOC365135	XP_577718.1	ILMN_1354744	0000780048	S	1943	CTATCACAAATCCCCATTAGAGGATAAGCCCATCCCCAGCAGGGTCCTGC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365135), mRNA.					
Rattus norvegicus	RefSeq	GI_21326446-S	ILMN_268929	EHD4	NM_139324.1	NM_139324.1		192204	21326446	NM_139324.1	Ehd4	NP_647540.1	ILMN_1365515	0000610180	S	3273	GGACACACACAGGTGAACATTTGATCCTGGGGCTGTAACTGAATGTGGGC	3	-	106595036-106595085	3q35	Rattus norvegicus EH-domain containing 4 (Ehd4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The process whereby cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes [goid 6907] [evidence IMP]; Any process that modulates the frequency, rate or extent of endocytosis [goid 30100] [evidence IMP]	Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Past2; MGC91469	Past2; MGC91469
Rattus norvegicus	RefSeq	GI_28460695-S	ILMN_288052	EEF1A1	NM_175838.1	NM_175838.1		171361	28460695	NM_175838.1	Eef1a1	NP_787032.1	ILMN_2038787	0005390538	S	1471	TCCCTAACACCTGCCACCCCAGTCTTAATCAGTGGTGGAAGAACGGTCTC	8	-	83463803-83463852	8q31	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IDA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IDA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Eef1a2; SI; EEF1A; MGC125172; Eef1a2l1; EEF-1; ALPHA; EF1A	Eef1a2; SI; EEF1A; MGC125172; Eef1a2l1; EEF-1; ALPHA; EF1A
Rattus norvegicus	RefSeq	GI_28460695-S	ILMN_288052	EEF1A1	NM_175838.1	NM_175838.1		171361	28460695	NM_175838.1	Eef1a1	NP_787032.1	ILMN_2038788	0000360593	S	1659	TTTTCAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAATCTGTCA	8	-	83463615-83463664	8q31	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IDA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IDA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Eef1a2; SI; EEF1A; MGC125172; Eef1a2l1; EEF-1; ALPHA; EF1A	Eef1a2; SI; EEF1A; MGC125172; Eef1a2l1; EEF-1; ALPHA; EF1A
Rattus norvegicus	RefSeq	GI_28460695-S	ILMN_288052	EEF1A1	NM_175838.1	NM_175838.1		171361	28460695	NM_175838.1	Eef1a1	NP_787032.1	ILMN_2039948	0006130626	S	14	TCGCAACGGGTTTGCCGTCAGAACGCAGGTGTTGTGAAAGCCACCGCTAA	8	-	83465821-83465849:83466782-83466802	8q31	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma [goid 5853] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IDA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IDA]; Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Eef1a2; SI; EEF1A; MGC125172; Eef1a2l1; EEF-1; ALPHA; EF1A	Eef1a2; SI; EEF1A; MGC125172; Eef1a2l1; EEF-1; ALPHA; EF1A
Rattus norvegicus	RefSeq	GI_58865609-A	ILMN_274172	TBCCD1	NM_001012016.1	NM_001012016.1		303830	58865609	NM_001012016.1	Tbccd1	NP_001012016.1	ILMN_1376644	0001740164	S	1971	CATGGGGCTCTGGAGACGTGAGGAGGAACGGAGAATGGTGTCTGCTCAAG	11	+	80408749-80408753:80415025-80415040:80415041-80415069	11q23	Rattus norvegicus TBCC domain containing 1 (Tbccd1), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC108782	MGC108782
Rattus norvegicus	RefSeq	GI_62665194-S	ILMN_296771	RBM35B_PREDICTED	XM_001074518.1	XM_001074518.1		307810	109508710	XM_001074518.1	Rbm35b_predicted	XP_001074518.1	ILMN_1352913	0000430452	S	2307	TTGGTGACCCACCTCGCACTGTGTTACAAGCCCCTAAAGAGTGGGTGTGT				19q12	PREDICTED: Rattus norvegicus RNA binding motif protein 35b (predicted) (Rbm35b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650576-S	ILMN_66601	LOC500639	XM_576014.1	XM_576014.1		500639	62650576	XM_576014.1	LOC500639	XP_576014.1	ILMN_1360953	0003520537	S	7	GTGCTTGTTCAGCTGGAGGCTATATTGCATGCAAAGAACCTTTGACATGG					PREDICTED: Rattus norvegicus similar to Conserved oligomeric Golgi complex subunit 5 (13S Golgi transport complex 90 kDa subunit) (GTC-90) (Golgi transport complex 1) (LOC500639), mRNA.					
Rattus norvegicus	RefSeq	GI_47578014	ILMN_293433	OLR1072	NM_001000062.1	NM_001000062.1		288822	47578014	NM_001000062.1	Olr1072	NP_001000062.1	ILMN_1650628	0002030019	S	755	CCTGCACCTCCCACCTGGGGGTTGTAAGTTTGCTTTATGGCACTGTTTCC	7	-	8465165-8465214	7q11	Rattus norvegicus olfactory receptor 1072 (Olr1072), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1072	Olr1072
Rattus norvegicus	RefSeq	GI_13027453	ILMN_299329	PRKAA2	NM_023991.1	NM_023991.1		78975	13027453	NM_023991.1	Prkaa2	NP_076481.1	ILMN_1650042	0002470592	S	2390	CTCATTTGTGTTTATGAGACTGGGTAGCTGGGGGCTTGGGGGCGGGCTGG	5	-	126007884-126007933	5q34	Rattus norvegicus protein kinase, AMP-activated, alpha 2 catalytic subunit (Prkaa2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IDA]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IMP]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [pmid 14614828] [evidence EXP]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [pmid 11724780] [evidence EXP]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence IDA]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IMP]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IMP]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	AMPK	AMPK
Rattus norvegicus	RefSeq	GI_47576494-S	ILMN_274439	OLR1616	NM_001000840.1	NM_001000840.1		405129	47576494	NM_001000840.1	Olr1616	NP_001000840.1	ILMN_1357866	0004050113	S	722	CCTTCTCCACTTGCGGGTCTCATCTGACTGTAGTTTCACTCTTTTATGGT	15	+	26162086-26162135	15p14	Rattus norvegicus olfactory receptor 1616 (Olr1616), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1616	Olr1616
Rattus norvegicus	RefSeq	GI_20127394-S	ILMN_296868	UOX	NM_053768.1	NM_053768.1		114768	20127394	NM_053768.1	Uox	NP_446220.1	ILMN_1363851	0004730465	S	1107	CCTGCATTAGCAGACACCGCAGGCTCCGTGGCCTTGGGCAGATTCCTTTA	2	+	244831891-244831940	2q44	Rattus norvegicus urate oxidase (Uox), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence TAS]	The chemical reactions and pathways involving purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine [goid 6144] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine [goid 6145] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: urate + O2 + H2O = 5-hydroxyisourate + H2O2 [goid 4846] [evidence TAS]; Catalysis of the reaction: urate + O2 + H2O = 5-hydroxyisourate + H2O2 [goid 4846] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	UOX-2	UOX-2
Rattus norvegicus	RefSeq	GI_47576656-S	ILMN_291033	OLR1691	NM_001000273.1	NM_001000273.1		294161	47576656	NM_001000273.1	Olr1691	NP_001000273.1	ILMN_1350239	0000870348	S	541	GTCCCCCAGTTGCTCAAGATCTCTTGCTCTAATGATTACGTTGGAGTACA	20	-	609595-609644	20p12	Rattus norvegicus olfactory receptor 1691 (Olr1691), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1691	Olr1691
Rattus norvegicus	RefSeq	GI_62658534-S	ILMN_273507	CYP2W1_PREDICTED	XM_001074391.1	XM_001074391.1		288517	109496668	XM_001074391.1	Cyp2w1_predicted	XP_001074391.1	ILMN_1355403	0006220164	S	1165	CCTAAGGGCACCCCCGTGATTCCTTTGCTGACCTCAGTGCTCCTGGACAA				12q11	PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily W, polypeptide 1 (predicted) (Cyp2w1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27682788-S	ILMN_283247	PCDHGA5	NM_001037137.1	NM_001037137.1		291637	80751166	NM_001037137.1	Pcdhga5	NP_001032214.1	ILMN_1367149	0001090670	S	2323	TGGCACATGTCACGCCTGCTTCAGACTTCCACGGGCAGATTGGCCAGCAT	18	+	30603180-30603229	18p11	Rattus norvegicus protocadherin gamma subfamily A, 5 (Pcdhga5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648169-S	ILMN_266758	TAPBPL_PREDICTED	XM_001063642.1	XM_001063642.1		297602	109474235	XM_001063642.1	Tapbpl_predicted	XP_001063642.1	ILMN_1363659	0002350364	S	1518	GCTACCTAAGAACCCTGTGTTGAGGTGTGGGACTGAGACGGGCCTGAAGG				4q42	PREDICTED: Rattus norvegicus TAP binding protein-like (predicted) (Tapbpl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655329-S	ILMN_63656	SLC16A14_PREDICTED	XM_237359.3	XM_237359.3		316578	109486300	XM_237359.3	Slc16a14_predicted	XP_237359.1	ILMN_1373526	0000380112	S	1734	CTCAGCCTTACTAGGACCGCCATTCGCAGGATGGATCTTCGACATCACCC	9	-	84171297-84171318:84175269-84175296	9q35	PREDICTED: Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 14 (predicted) (Slc16a14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718666-S	ILMN_52366	LOC501448	XM_576859.1	XM_576859.1		501448	62718666	XM_576859.1	LOC501448	XP_576859.1	ILMN_1370282	0001170068	S	1043	GCATAATGAAATGGGCAAGCGGGGCTGATGAGCCAAATCCTGTCAGAGGG					PREDICTED: Rattus norvegicus similar to Der1-like domain family, member 1 (LOC501448), mRNA.					
Rattus norvegicus	RefSeq	GI_6980953-S	ILMN_286356	GLS	NM_012569.1	NM_012569.1		24398	6980953	NM_012569.1	Gls	NP_036701.1	ILMN_1365210	0002190411	S	4067	GATAACAGCAAGGACCCTGTAAGTGTGTGAATGAGCCGCTGACTGCTGCC	9	+	46452795-46452844	9q22	Rattus norvegicus glutaminase (Gls), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IPI]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence IEA]; A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates [goid 2087] [evidence ISS]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6543] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6543] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6543] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]	Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence TAS]; Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence IEA]; Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence ISS]; Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3 [goid 4359] [evidence IEA]	Glut; RATGLUT	Glut; RATGLUT
Rattus norvegicus	RefSeq	GI_28916694-S	ILMN_279342	HSP90AA1	NM_175761.2	NM_175761.2		299331	28916694	NM_175761.2	Hsp90aa1	NP_786937.1	ILMN_1358144	0001240168	S	2228	GATGACACATCACGCATGGAAGAAGTAGACTAGGCTTCACCAGAACTATG	6	-	135414123-135414140:135414141-135414172	6q32	Rattus norvegicus heat shock protein 90, alpha (cytosolic), class A member 1 (Hsp90aa1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Modulates the activity of nitric oxide synthase [goid 30235] [evidence ISS]; Interacting selectively with a tetratricopeptide repeat (TPR) domain of a protein, the consensus sequence of which is defined by a pattern of small and large hydrophobic amino acids and a structure composed of helices [goid 30911] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence TAS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	Hsp90; Hsp86; MGC105293	Hsp90; Hsp86; MGC105293
Rattus norvegicus	RefSeq	GI_62653700-S	ILMN_66135	LOC501001	XM_580148.1	XM_580148.1		501001	62653700	XM_580148.1	LOC501001	XP_580148.1	ILMN_1356708	0000770576	S	651	CATCAGATTTGTGACCTTTACCAGATCTCTGTGGGAAGAGAGCCTCGGGC					PREDICTED: Rattus norvegicus LOC501001 (LOC501001), mRNA.					
Rattus norvegicus	RefSeq	GI_62658418-A	ILMN_281696	ARPC1A	NM_031146.1	NM_031146.1		81824	13592136	NM_031146.1	Arpc1a	NP_112408.1	ILMN_1376555	0006020575	S	938	CGCTTCCGTAACATGGATAAGAGGGCCACTACCGAGGACCGCAACACAGC				12p11	Rattus norvegicus actin related protein 2/3 complex, subunit 1A (Arpc1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659451-S	ILMN_48646	RGS18	XM_222692.4	XM_222692.4		289076	109497984	XM_222692.4	Rgs18	XP_222692.2	ILMN_1349480	0005670411	S	601	TTGATAGAGGGAAGACCTCAGAGACCAACAAATCTTAGGAGGCGATCGCG	13	-	58607955-58608004	13q21	PREDICTED: Rattus norvegicus regulator of G-protein signaling 18 (Rgs18), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence ISS]; Inhibits signal transduction the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form [goid 16299] [evidence IEA]; Inhibits signal transduction the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form [goid 16299] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641857-S	ILMN_291297	TUT1	NM_001033901.1	NM_001033901.1		499314	76559934	NM_001033901.1	Tut1	NP_001029073.1	ILMN_1362685	0002650017	S	2326	GCCCGGAGACGATTTCAGCAGCAAACCAAGGAAGAAGGCAGAGGAGGTCC	1	+	211639673-211639722	1q43	Rattus norvegicus terminal uridylyl transferase 1, U6 snRNA-specific (Tut1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: UTP + RNA(n) = diphosphate + RNA(n+1) [goid 50265] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645417-S	ILMN_270018	LOC687414	XM_001078452.1	XM_001078452.1		687414	109470340	XM_001078452.1	LOC687414	XP_001078452.1	ILMN_1360664	0004850242	S	2855	GCTGGTTTGAGGAGAAGTCTGGCAACAGCTACACACTTTCAGCCGAGGTC					PREDICTED: Rattus norvegicus similar to PR-domain protein 11 (LOC687414), mRNA.					
Rattus norvegicus	RefSeq	GI_62656218-S	ILMN_54828	ZFP287_PREDICTED	XM_220549.4	XM_220549.4		303212	109488279	XM_220549.4	Zfp287_predicted	XP_220549.4	ILMN_1357343	0003390463	S	2467	CAGCACCAACGGGTTCATATGGGCGCCAGACATCGCAATGGACAGATATG	10	-	48899346-48899395	10q23	PREDICTED: Rattus norvegicus zinc finger protein 287 (predicted) (Zfp287_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638277-S	ILMN_266717	RGD1562697_PREDICTED	XM_001067478.1	XM_001067478.1		308257	109460408	XM_001067478.1	RGD1562697_predicted	XP_001067478.1	ILMN_1356869	0000940048	S	2414	TTGTTGAGGTTTTCTCTATCTTGGCTTCCTGTGCAGGGTTGCTAGGGTGC				1p13	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (predicted) (RGD1562697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655518-S	ILMN_52987	RAB12	XM_343639.3	XM_343639.3		25530	109486462	XM_343639.3	Rab12	XP_343640.3	ILMN_1358807	0004070020	S	566	ATCGATAAGCCCCAGTACATCCGAAGGGAGAGAGTGGTCCTCGGCCGCGT	9	-	105574593-105574634:105625458-105625465	9q37	PREDICTED: Rattus norvegicus RAB12, member RAS oncogene family (Rab12), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IPI]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646019-S	ILMN_64440	LOC499909	XM_575254.1	XM_575254.1		499909	62646019	XM_575254.1	LOC499909	XP_575254.1	ILMN_1349688	0000130139	S	525	GGGCATCCTTGTTTCGGGGACCTTTGGCTTTCCATCTTAGGACTGAGACC					PREDICTED: Rattus norvegicus similar to zinc finger protein 120 isoform 1 (LOC499909), mRNA.					
Rattus norvegicus	RefSeq	GI_62646546-S	ILMN_68196	BTBD4_PREDICTED	XM_230963.4	XM_230963.4		311718	109469369	XM_230963.4	Btbd4_predicted	XP_230963.3	ILMN_1349528	0004760154	S	1679	GGAAGGACGACGTGGGTTTGGCACATGAGGATGCACTGCTGGGAGATGAC	3	-	170532272-170532321	3q43	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 4 (predicted) (Btbd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646544-S	ILMN_68196	BTBD4_PREDICTED	XM_230963.4	XM_230963.4		311718	109469369	XM_230963.4	Btbd4_predicted	XP_230963.3	ILMN_1368505	0001740114	S	3962	GTTCCGACAGGGAACCCCAGAAAGGCCAGAAAAGGCAGTCTGGAAGGGGA	3	-	170529989-170530038	3q43	PREDICTED: Rattus norvegicus BTB (POZ) domain containing 4 (predicted) (Btbd4_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.132329	ILMN_53771	TLR5	XM_223016.3	XM_223016.3		289337	109498326	XM_223016.3	Tlr5	XP_223016.3	ILMN_1530453	0003780341	S	1143	ATTATTAAAAAAGCTACAAACCTTAGATCTCCGTGACAATGCTCTTAAAA	13	+	99027610-99027659	13q26	PREDICTED: Rattus norvegicus toll-like receptor 5 (Tlr5), mRNA.		Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence IDA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence IDA]; The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2282] [evidence IDA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IDA];  [goid 52033] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62659886-S	ILMN_53771	TLR5	XM_223016.3	XM_223016.3		289337	109498326	XM_223016.3	Tlr5	XP_223016.3	ILMN_1357727	0005050180	S	2349	CCTCAAGCGTGTTCTCATCGTGGTAGTGGTGGGTTCGCTGCCCCAGTATC	13	+	99028816-99028865	13q26	PREDICTED: Rattus norvegicus toll-like receptor 5 (Tlr5), mRNA.		Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence IDA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence IDA]; The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2282] [evidence IDA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IDA];  [goid 52033] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62718374-S	ILMN_56204	LOC501385	XM_576798.1	XM_576798.1		501385	62718374	XM_576798.1	LOC501385	XP_576798.1	ILMN_1373376	0002370154	S	1156	GTCTAAGCCTGAATGTCACAGAGGCACCTGGTACTGTGACTCGACCACTC					PREDICTED: Rattus norvegicus LOC501385 (LOC501385), mRNA.					
Rattus norvegicus	RefSeq	GI_62656213-S	ILMN_54463	LOC497922	XM_573109.1	XM_573109.1		497922	62656213	XM_573109.1	LOC497922	XP_573109.1	ILMN_1374349	0003190541	S	689	GTACACGGACCGGCCTGACTGGCAGAGCGTGATGCAGTATGTGGCCCAGA					PREDICTED: Rattus norvegicus similar to novel protein (LOC497922), mRNA.					
Rattus norvegicus	RefSeq	GI_56605751-S	ILMN_270626	RG9MTD1	NM_001008337.1	NM_001008337.1		304012	56605751	NM_001008337.1	Rg9mtd1	NP_001008338.1	ILMN_1368146	0006840538	S	2323	GACGCCCACAGATAGGTCCTTGGGGATTGGCACTGTTAAGTATGGCCTTG	11	+	45564077-45564126	11q12	Rattus norvegicus RNA (guanine-9-) methyltransferase domain containing 1 (Rg9mtd1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94708	MGC94708
Rattus norvegicus	RefSeq	GI_56090536-S	ILMN_294788	CCL7	NM_001007612.1	NM_001007612.1		287561	56090536	NM_001007612.1	Ccl7	NP_001007613.1	ILMN_1366023	0003360372	S	447	TCTGAGAACTGTGCTGAAATGGGTGGACTACGGTCCTAAGGGGTAGGAAC	10	+	70268771-70268820	10q26	Rattus norvegicus chemokine (C-C motif) ligand 7 (Ccl7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666700-S	ILMN_67711	LOC503432	XM_578973.1	XM_578973.1		503432	62666700	XM_578973.1	LOC503432	XP_578973.1	ILMN_1356225	0000050022	S	416	CCTCTTCTGTAGCAGCCAGATCGTATCCTGGAGGACTGGAGATGCCCTGC					PREDICTED: Rattus norvegicus similar to protein kinase C inhibitor (LOC503432), mRNA.					
Rattus norvegicus	RefSeq	GI_62645701-S	ILMN_48782	LOC366089	XM_345378.2	XM_345378.2		366089	62645701	XM_345378.2	LOC366089	XP_345379.2	ILMN_1373685	0003190575	S	271	AAACAGAGAGGGCAGAAGTGATTCCAACCGAGCGTACAGGAGGGCCAGTG				3q24	PREDICTED: Rattus norvegicus similar to TF-1 apoptosis related protein 19 (LOC366089), mRNA.					
Rattus norvegicus	RefSeq	GI_8850210-S	ILMN_62457	ADD1	NM_016990.2	NM_016990.2		24170	78365243	NM_016990.2	Add1	NP_058686.2	ILMN_1361504	0002850497	S	1775	CTAGAGGAATACCGCCGAGAGGTGGAGCGGAAGCAGAAGGGCTCTGAAGA	14	-	81754310-81754311:81757480-81757527	14q21	Rattus norvegicus adducin 1 (alpha) (Add1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence NAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence TAS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with a T cell receptor, the antigen-recognizing receptor on the surface of T cells [goid 42608] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC124621	MGC124621
Rattus norvegicus	RefSeq	GI_62664642-S	ILMN_52490	GM672_PREDICTED	XM_344701.2	XM_344701.2		364900	62664642	XM_344701.2	Gm672_predicted	XP_344702.2	ILMN_1372816	0000520458	S	2296	CCAACTGGCAGCAGGCAACGTGTAGCAGATGTCTGGGAGGACAAAGGCAG				18q12.3	PREDICTED: Rattus norvegicus gene model 672, (NCBI) (predicted) (Gm672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27708671-S	ILMN_265140	RGD1561086_PREDICTED	XM_001068142.1	XM_001068142.1		296870	109512030	XM_001068142.1	RGD1561086_predicted	XP_001068142.1	ILMN_1369279	0002470324	S	277	TGGATCCATGTGTGCCAAGTGTGTCCGTGACAGGATCAAGTGGGCTTTCC				Xq31	PREDICTED: Rattus norvegicus similar to ribosomal protein L34 (predicted) (RGD1561086_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654094-S	ILMN_62955	RGD1309079_PREDICTED	XM_236493.3	XM_236493.3		315891	62654094	XM_236493.3	RGD1309079_predicted	XP_236493.3	ILMN_1361443	0000540056	S	3138	CTGAGGTGGCCTGGACTCAGGAACTGTCCTAACAAGGGGAACGAGCAGAA				8q31	PREDICTED: Rattus norvegicus similar to Ab2-095 (predicted) (RGD1309079_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660664-S	ILMN_66253	LOC498396	XM_573636.2	XM_573636.2		498396	109499918	XM_573636.2	LOC498396	XP_573636.2	ILMN_1361323	0000870288	S	1461	GAAGCTGCACCTGTTGAGTCAGAGGAAACATCTTCCCAGAACTGGGCTGC	14	+	82352136-82352185	14q21	PREDICTED: Rattus norvegicus similar to DNA polymerase N (LOC498396), mRNA.					
Rattus norvegicus	RefSeq	GI_62660666-S	ILMN_66253	LOC498396	XM_573636.2	XM_573636.2		498396	109499918	XM_573636.2	LOC498396	XP_573636.2	ILMN_1370387	0003440397	S	2501	AGGTGCCCCTAAAGGTGAACTTGAGTATTGGCCGCTCATGGGGACACCTG	14	+	82444777-82444778:82446055-82446102	14q21	PREDICTED: Rattus norvegicus similar to DNA polymerase N (LOC498396), mRNA.					
Rattus norvegicus	RefSeq	GI_62665983-S	ILMN_272573	STOX1_PREDICTED	XM_001057100.1	XM_001057100.1		294388	109510122	XM_001057100.1	Stox1_predicted	XP_001057100.1	ILMN_1348995	0004560687	S	2738	TGGAAGGCACGGAGAATTCCAGCATGGCGGGAGACAGTGGGATTGATTCC				20q11	PREDICTED: Rattus norvegicus storkhead box 1 (predicted) (Stox1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646158-S	ILMN_48368	LOC502669	XM_578166.1	XM_578166.1		502669	62646158	XM_578166.1	LOC502669	XP_578166.1	ILMN_1356695	0002570129	S	823	GTCAGCACTCAACTCCTTGTCCAAAGCAGTCTACCCAGACCGTGGGCACC					PREDICTED: Rattus norvegicus similar to ABR027Cp (LOC502669), mRNA.					
Rattus norvegicus	RefSeq	GI_34867854-S	ILMN_50369	RGD1560617_PREDICTED	XM_238518.3	XM_238518.3		300135	109481153	XM_238518.3	RGD1560617_predicted	XP_238518.2	ILMN_1365764	0004920059	S	1132	GCGATGACTACGACGAAGAAGGTGAAGATGCTGATGAGGGTTATCAGCTC	7	+	125285110-125285159	7q34	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053561; AF062594 (predicted) (RGD1560617_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090310-S	ILMN_269590	MRPS15	NM_001007653.1	NM_001007653.1		298517	56090310	NM_001007653.1	Mrps15	NP_001007654.1	ILMN_1368716	0002570138	S	1879	GTGCTACAGGTCCAGGTGCCAGCCTTTCAGGGGACTAGGGAGTAAGGAGA	5	+	145408044-145408093	5q36	Rattus norvegicus mitochondrial ribosomal protein S15 (Mrps15), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The smaller of the two subunits of a mitochondrial ribosome [goid 5763] [evidence ISS]; The smaller of the two subunits of a mitochondrial ribosome [goid 5763] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC95073	MGC95073
Rattus norvegicus	RefSeq	GI_62717809-S	ILMN_49343	LOC501227	XM_580175.1	XM_580175.1		501227	62717809	XM_580175.1	LOC501227	XP_580175.1	ILMN_1365328	0000730112	S	166	GGCTACGGAGAAGGGAACCCCGCTCAAGGAAGGACACAACCACTATGGTA					PREDICTED: Rattus norvegicus LOC501227 (LOC501227), mRNA.					
Rattus norvegicus	RefSeq	GI_57164148-S	ILMN_296212	CHFR	NM_001009258.1	NM_001009258.1		288734	57164148	NM_001009258.1	Chfr	NP_001009258.1	ILMN_1364233	0006760156	S	2866	GCTCCAGACTGACAGGGCCTTGCTTCTCCAGCCCTGATCTGGTACATTAT	12	-	46651501-46651550	12q16	Rattus norvegicus checkpoint with forkhead and ring finger domains (Chfr), mRNA.		Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence ISS]; Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence ISS]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95316	MGC95316
Rattus norvegicus	RefSeq	GI_62645623-S	ILMN_281345	LTK_PREDICTED	XM_001075682.1	XM_001075682.1		311337	109470468	XM_001075682.1	Ltk_predicted	XP_001075682.1	ILMN_1364019	0001850132	S	2633	CAGACATTGACCTTAGCAATGGCCCCTCCTCGGATTCCTTTCCAGGCGAG				3q35	PREDICTED: Rattus norvegicus leukocyte tyrosine kinase (predicted), transcript variant 4 (Ltk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642013-S	ILMN_69922	TMC1_PREDICTED	XM_342033.2	XM_342033.2		361739	62642013	XM_342033.2	Tmc1_predicted	XP_342034.2	ILMN_1361931	0005670575	S	2351	GGGAACCGTTGCTCCATGTTCTACCATGCGTCAGCAAGGCCATGACCATC				1q51	PREDICTED: Rattus norvegicus transmembrane channel-like 1 (predicted) (Tmc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648616-S	ILMN_55188	CHD7_PREDICTED	XM_232671.4	XM_232671.4		312974	109474644	XM_232671.4	Chd7_predicted	XP_232671.4	ILMN_1357667	0001850168	S	8985	GAGAGACCCTGGAAGGCAGCGACGCCGAGGAGAACCTGGACAAGACTATA	5	+	22709996-22710045	5q13	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 7 (predicted) (Chd7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114211-S	ILMN_269854	V1RB5	NM_001008971.1	NM_001008971.1		497787	57114211	NM_001008971.1	V1rb5	NP_001008971.1	ILMN_1350968	0001850725	S	771	CTTCTACTCAAGGATGAAGTTCAAGGATGGGTCAACATTCTACTGTGTCC	4	+	123915955-123916004	4q34	Rattus norvegicus vomeronasal 1 receptor, B5 (V1rb5), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	V1rb5	V1rb5
Rattus norvegicus	RefSeq	GI_62718484-S	ILMN_63639	LOC316848	XM_229302.3	XM_229302.3		316848	62718484	XM_229302.3	LOC316848	XP_229302.3	ILMN_1349951	0002190079	S	315	CCTGCCAGTGCCATGGTTGGCCGAGCTGTGGAGCATAAATTTGAGGGCAA					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC316848), mRNA.					
Rattus norvegicus	RefSeq	GI_62638261-S	ILMN_63436	LOC308719	XM_218779.2	XM_218779.2		308719	62638261	XM_218779.2	LOC308719	XP_218779.2	ILMN_1370077	0002680156	S	658	TCTAAGTCACAGAGATCCCCCGCCTCTGCCTCCTGAGCGCTGGGACTGAA				1p12	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (LOC308719), mRNA.					
Rattus norvegicus	RefSeq	GI_62645195-S	ILMN_287271	TLK1_PREDICTED	XM_001059845.1	XM_001059845.1		311118	109470063	XM_001059845.1	Tlk1_predicted	XP_001059845.1	ILMN_1365340	0004570671	S	3821	AGTTGTCCATGGTGCAGAAAACAGACTATCCCTGCCAGATGCCCCATACC				3q21	PREDICTED: Rattus norvegicus tousled-like kinase 1 (predicted) (Tlk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661552	ILMN_48894	LOC498524	XM_573793.1	XM_573793.1		498524	62661552	XM_573793.1	LOC498524	XP_573793.1	ILMN_1651098	0004590025	S	154	ACTCCCACTCGACAGGAGGGGGTCATCGCCACAGTCAACTCTCAGTCTTT					PREDICTED: Rattus norvegicus similar to CG14120-PA (LOC498524), mRNA.					
Rattus norvegicus	RefSeq	GI_62652994-S	ILMN_51450	LOC500922	XM_576331.1	XM_576331.1		500922	62652994	XM_576331.1	LOC500922	XP_576331.1	ILMN_1374249	0005570440	S	648	GGTTTGCTGCAGGGTCCCAGAACCGTAGTGGAGCATGAACCCACATTTGC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC500922), mRNA.					
Rattus norvegicus	RefSeq	GI_57527315-S	ILMN_268356	BRI3	XM_001071637.1	XM_001071637.1		304284	109496599	XM_001071637.1	Bri3	XP_001071637.1	ILMN_1373745	0005570397	S	729	CAGGACTGTTTTGTAAAGTGCGTGCTCTGCCTGCGGTGGGATGGACTGGC				12p11	PREDICTED: Rattus norvegicus brain protein I3 (Bri3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62658804-S	ILMN_269456	MMP17_PREDICTED	XM_001072688.1	XM_001072688.1		288626	109497108	XM_001072688.1	Mmp17_predicted	XP_001072688.1	ILMN_1354300	0004210692	S	1768	GGATGGTCTGGCAGTATGTTCCTGCACTTCAGACGCACACAGGTCTGCAC				12q13	PREDICTED: Rattus norvegicus matrix metallopeptidase 17 (predicted) (Mmp17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34875997	ILMN_272402	RGD1563063_PREDICTED	XM_001074682.1	XM_001074682.1		306163	109502844	XM_001074682.1	RGD1563063_predicted	XP_001074682.1	ILMN_1650214	0000670576	S	2000	CTGACCAACCAAATCAACAACCCTGAGGTGGAGGTGGACATCACGCGGCC				15q24	PREDICTED: Rattus norvegicus similar to Gpc6 protein (predicted) (RGD1563063_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981667-S	ILMN_292641	TNR	NM_013045.1	NM_013045.1		25567	6981667	NM_013045.1	Tnr	NP_037177.1	ILMN_1353848	0005290647	S	6404	TGTGGCTGAACAGCCCACCTCATCAAGGGAGCCGAAATCTCGTGCCGAAT	13	+	75347127-75347176	13q22	Rattus norvegicus tenascin R (Tnr), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]	J1NRM	J1NRM
Rattus norvegicus	RefSeq	GI_16758429-S	ILMN_275702	RAX	NM_053678.1	NM_053678.1		114213	16758429	NM_053678.1	Rax	NP_446130.1	ILMN_1348786	0006220148	S	913	TTCGGGGACAAGTTCTCGCTGGAAGAGGCGTACCCACGCAACAGCAGCAT	18	+	62571069-62571118	18q12.1	Rattus norvegicus retina and anterior neural fold homeobox (Rax), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The progression of the hypothalamus region of the forebrain, from its initial formation to its mature state [goid 21854] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 60173] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Rx	Rx
Rattus norvegicus	RefSeq	GI_19424213-S	ILMN_62286	MYD116	NM_133546.1	NM_133546.1		171071	19424213	NM_133546.1	Myd116	NP_598230.1	ILMN_1369158	0003060300	S	1888	AAGCCGCTTTGCTCGACGCATTGCCAGGCAGAGGAGCAGCTGGGTCCTTA				1q22	Rattus norvegicus myeloid differentiation primary response gene 116 (Myd116), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Peg-3	Peg-3
Rattus norvegicus	RefSeq	GI_13540625-S	ILMN_270794	LUZP1	NM_030830.1	NM_030830.1		79428	13540625	NM_030830.1	Luzp1	NP_110457.1	ILMN_1358314	0001090333	S	10776	ACAGGCAGTGGCTCAGGGCTCCTTGGGTGCATGTGTCTAGTTGAAGCTGC	5	+	155297789-155297838	5q36	Rattus norvegicus leucine zipper protein 1 (Luzp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]			Luzp	Luzp
Rattus norvegicus	RefSeq	GI_62648707-S	ILMN_59892	RGD1565364_PREDICTED	XM_575779.2	XM_575779.2		500418	109474744	XM_575779.2	RGD1565364_predicted	XP_575779.2	ILMN_1357599	0001230167	S	1904	GCCAGAAGGGAAAGAACACACAGGCAATCCCTCCAAGAACAAGACCTGCC	5	+	34134142-34134191	5q13	PREDICTED: Rattus norvegicus similar to cyclic nucleotide-gated channel subunit CNG6 (predicted) (RGD1565364_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651386	ILMN_61080	LOC500746	XM_576125.1	XM_576125.1		500746	62651386	XM_576125.1	LOC500746	XP_576125.1	ILMN_1650892	0006400091	S	634	GCAGGAGCTCTCAGAACCAGCAGAGGGAGCTCAGTGGACATGGAACTCAG				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region IR2 precursor (LOC500746), mRNA.					
Rattus norvegicus	RefSeq	GI_62641788-I	ILMN_58566	EHD1_PREDICTED	XM_219529.3	XM_219529.3		293692	62641788	XM_219529.3	Ehd1_predicted	XP_219529.3	ILMN_1376189	0001240020	S	5398	GTGTGATCCGACAGCTCCCCCCAACTGTGAATGAGGATGGAGGCTTTTGG				1q43	PREDICTED: Rattus norvegicus EH-domain containing 1 (predicted) (Ehd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164048-S	ILMN_279857	V1RC5	NM_001009523.1	NM_001009523.1		494243	57164048	NM_001009523.1	V1rc5	NP_001009523.1	ILMN_1355218	0006980064	S	611	GCAGACATCAGAGGCAATGCAAGCATCTTCATCGCATCAGCCACCTGAGC	4	+	86266581-86266630	4q24	Rattus norvegicus vomeronasal 1 receptor, C5 (V1rc5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928831-S	ILMN_292685	NBL1	NM_031609.1	NM_031609.1		50594	13928831	NM_031609.1	Nbl1	NP_113797.1	ILMN_1357962	0005900121	S	1444	AGAGGTGACAGTTTATCCCCATCACCTGGGACCGTAGTGGACAGGAGGCC	5|NW_047748.1	-	38820-38869		Rattus norvegicus neuroblastoma, suppression of tumorigenicity 1 (Nbl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657890-S	ILMN_269595	MAK3_PREDICTED	XM_001067534.1	XM_001067534.1		288108	109494392	XM_001067534.1	Mak3_predicted	XP_001067534.1	ILMN_1358373	0005360292	S	759	GCCTCAGAGTCCCATCCGGTCAGAGTGCAGAGACACAAAAGACAGACAAC				11q21	PREDICTED: Rattus norvegicus Mak3 homolog (S. cerevisiae) (predicted) (Mak3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11693177-S	ILMN_281727	GBL	NM_022404.1	NM_022404.1		64226	11693177	NM_022404.1	Gbl	NP_071799.1	ILMN_1372708	0005890215	S	2265	CCCTGGACTCTTGGCCTGTGCAGAACATGGGATTTTGGAGTGTGTGTGAG	10	-	13725659-13725708	10q12	Rattus norvegicus G protein beta subunit-like (Gbl), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC114322	MGC114322
Rattus norvegicus	RefSeq	GI_62661304	ILMN_267316	CCNB1IP1	NM_001025141.1	NM_001025141.1		498492	68341944	NM_001025141.1	Ccnb1ip1	NP_001020312.1	ILMN_1651099	0004920377	S	1403	CCATTGCTCACACAGTCACACTGCTGCACAGATCGTGTTTCAGACCAAGC	15	-	26771436-26771485	15p14	Rattus norvegicus cyclin B1 interacting protein 1 (Ccnb1ip1), mRNA.		The initial formation of a blastocyst from a solid ball of cells known as a morula [goid 1825] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Progression through metaphase of meiosis I; analogous to mitotic metaphase [goid 7132] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The cell cycle process whereby a connection between chromatids forms, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids [goid 51026] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661306-S	ILMN_267316	CCNB1IP1	NM_001025141.1	NM_001025141.1		498492	68341944	NM_001025141.1	Ccnb1ip1	NP_001020312.1	ILMN_1367122	0007050497	S	449	CGGAAGTGTCGTATCAAGCTCTCTGGCTATGCTTGGGTCACGGCCTGCTC	15	-	26775588-26775637	15p14	Rattus norvegicus cyclin B1 interacting protein 1 (Ccnb1ip1), mRNA.		The initial formation of a blastocyst from a solid ball of cells known as a morula [goid 1825] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Progression through metaphase of meiosis I; analogous to mitotic metaphase [goid 7132] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The cell cycle process whereby a connection between chromatids forms, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids [goid 51026] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664360-S	ILMN_63583	TRIM36_PREDICTED	XM_225947.4	XM_225947.4		291597	109506565	XM_225947.4	Trim36_predicted	XP_225947.4	ILMN_1368998	0005080576	S	3045	GTTACTACTGTCCACTTGGATGGCACTGTTTGTGGGCTCATTGTGTGGTC	18	-	40328425-40328474	18q11	PREDICTED: Rattus norvegicus tripartite motif protein 36 (predicted) (Trim36_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646229-S	ILMN_51625	LOC499931	XM_575276.1	XM_575276.1		499931	62646229	XM_575276.1	LOC499931	XP_575276.1	ILMN_1364387	0003990059	S	1177	CTTGGCTGACCCTGACAAAGCTCCCCAGAGGCAAGGCTGTGAAAGCAGAC				3q42	PREDICTED: Rattus norvegicus similar to Src-like adaptor protein-2 (LOC499931), mRNA.					
Rattus norvegicus	RefSeq	GI_62662379-S	ILMN_48734	LOC361121	XM_341408.2	XM_341408.2		361121	62662379	XM_341408.2	LOC361121	XP_341409.1	ILMN_1350416	0004050746	S	161	GAGGAGCGCGAGCTCAGAGACACAAGTACACAAGTAAAGGGTAAAGTATT					PREDICTED: Rattus norvegicus similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (LOC361121), mRNA.					
Rattus norvegicus	RefSeq	GI_8393196	ILMN_51406	CRP	NM_017096.2	NM_017096.2		25419	61098202	NM_017096.2	Crp	NP_058792.1	ILMN_1650712	0000670711	S	512	AAGCATCATCTTGGGGCAGGAGCAGGACTCGTATGGCGGTGGCTTTGACG	13	+	88702904-88702953	13q24	Rattus norvegicus C-reactive protein, pentraxin-related (Crp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IMP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34863644-S	ILMN_68644	LOC315712	XM_236295.3	XM_236295.3		315712	62653748	XM_236295.3	LOC315712	XP_236295.3	ILMN_1362928	0001500736	S	2475	CCAAACTCCATCATTGTAGACCAGCCTAATGCTGGAGCAGCCAAGGATCC				8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC315712), mRNA.					
Rattus norvegicus	RefSeq	GI_12018237-S	ILMN_292680	AZIN1	NM_022585.1	NM_022585.1		58961	12018237	NM_022585.1	Azin1	NP_072107.1	ILMN_1364984	0000450750	S	3717	AGGACCCCAGTCCACTGTCATCTAGTTGCCCTTGGACTTTTTTCCAAGGT	7	-	74159626-74159675	7q22	Rattus norvegicus antizyme inhibitor 1 (Azin1), mRNA.		The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups [goid 6596] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The stopping, prevention or reduction of the activity of the enzyme ornithine decarboxylase [goid 8073] [evidence IDA]; Upregulation of the activity of the enzyme ornithine decarboxylase [goid 42978] [evidence ISS]	Oazi; Oazin	Oazi; Oazin
Rattus norvegicus	RefSeq	GI_62645129-S	ILMN_65841	RGD1560210_PREDICTED	XM_238267.3	XM_238267.3		295622	109468184	XM_238267.3	RGD1560210_predicted	XP_238267.1	ILMN_1373581	0004670097	S	197	TTCGGCTGCCCACGGCAATGCAGTCAACCTTGATTTTCTTTCAGCCTGGG	3	+	40601499-40601548	3q21	PREDICTED: Rattus norvegicus RGD1560210 (predicted) (RGD1560210_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27699071-S	ILMN_65841	RGD1560210_PREDICTED	XM_238267.3	XM_238267.3		295622	109468184	XM_238267.3	RGD1560210_predicted	XP_238267.1	ILMN_2040452	0007160678	S	244	GGGAAGCGATCAGCAAAGAGGCTCAGCAAACAGCTTTAACATCTGAGGCC	3	+	40601546-40601595	3q21	PREDICTED: Rattus norvegicus RGD1560210 (predicted) (RGD1560210_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655707-S	ILMN_277154	DNAJA3	NM_001038596.1	NM_001038596.1		360481	84370367	NM_001038596.1	Dnaja3	NP_001033685.1	ILMN_1356684	0001500041	S	1274	TGAGCTATGCTGAGGATGAGACCGATGTGGAGGGGACAGTGAATGGAGTC	10	-	10989733-10989782	10q12	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily A, member 3 (Dnaja3), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process whereby new strands of DNA are synthesized in the mitochondrion [goid 6264] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB [goid 32088] [evidence IDA]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	Tid-1	Tid-1
Rattus norvegicus	RefSeq	GI_62650802-S	ILMN_273312	LOC500668	XM_001080587.1	XM_001080587.1		500668	109479502	XM_001080587.1	LOC500668	XP_001080587.1	ILMN_1357990	0005360739	S	2379	CGAGTCCATTAGCGCCTGGCTCCTTGGGGGAATCGAAAGGCTGCACAGTC				6q24	PREDICTED: Rattus norvegicus similar to Centromeric protein E (CENP-E protein) (LOC500668), mRNA.					
Rattus norvegicus	RefSeq	GI_34865388-S	ILMN_273312	LOC500668	XM_001080587.1	XM_001080587.1		500668	109479502	XM_001080587.1	LOC500668	XP_001080587.1	ILMN_1357072	0000520750	S	2788	CTGCAAAGGCAGACGTGCTTGTGGAATGTGACGGCAGAAACAGAACAAGG				6q24	PREDICTED: Rattus norvegicus similar to Centromeric protein E (CENP-E protein) (LOC500668), mRNA.					
Rattus norvegicus	RefSeq	GI_57164074-S	ILMN_274526	V1RE2	NM_001009512.1	NM_001009512.1		494231	57164074	NM_001009512.1	V1re2	NP_001009512.1	ILMN_1371411	0006450722	S	299	GTTTCTTGAGTGTCTTTCAGGCAATCACCATCAGCCCCTGGAACTCCTGC	1	+	57689653-57689702	1q12	Rattus norvegicus vomeronasal 1 receptor, E2 (V1re2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657539-S	ILMN_271449	RGD1562102_PREDICTED	XM_001063118.1	XM_001063118.1		498036	109493748	XM_001063118.1	RGD1562102_predicted	XP_001063118.1	ILMN_1367990	0006590722	S	2000	CAGGGACCTCCTGGCTTGAGTTCATAAGGGGTTCAAGTTCTGACACCACC				11p12	PREDICTED: Rattus norvegicus similar to CKT2 (predicted) (RGD1562102_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647706-S	ILMN_269542	RGD1564002_PREDICTED	XM_001073769.1	XM_001073769.1		500235	109473808	XM_001073769.1	RGD1564002_predicted	XP_001073769.1	ILMN_1365796	0006040619	S	908	CACAGGGCTTGGAGCCTGGGGCCATCACCGTCAGAGGGACAAGAAAATGG				4q34	PREDICTED: Rattus norvegicus similar to empty spiracles homolog 1 (predicted) (RGD1564002_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592134-S	ILMN_288038	CIB1	NM_031145.1	NM_031145.1		81823	13592134	NM_031145.1	Cib1	NP_112407.1	ILMN_1370750	0004810022	S	548	CTCTCCGAGTTCCAGCACGTCATCTCTCGCTCACCAGACTTTGCCAGCTC	1	-	136032078-136032092:136032887-136032921	1q31	Rattus norvegicus calcium and integrin binding 1 (calmyrin) (Cib1), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Sip2-28; Cib	Sip2-28; Cib
Rattus norvegicus	RefSeq	GI_11559957-S	ILMN_294880	SYT6	NM_022191.1	NM_022191.1		60565	11559957	NM_022191.1	Syt6	NP_071527.1	ILMN_1371392	0006650044	S	1774	GCTTGGCGGAGGTAAAGAAATCCTTCAAAGAGGGAACCCCCCGGTTGTGA				2q34	Rattus norvegicus synaptotagmin VI (Syt6), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IPI]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]	MGC116356	MGC116356
Rattus norvegicus	RefSeq	GI_62652905-S	ILMN_69948	MLC1_PREDICTED	XM_235558.4	XM_235558.4		315215	109481167	XM_235558.4	Mlc1_predicted	XP_235558.2	ILMN_1351551	0006200114	S	1215	TCTGCCTGGCTCCCGGCGTGTTCCACTGTATGGACTCTAACCATTGCGCA	7	-	127266539-127266588	7q34	PREDICTED: Rattus norvegicus megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) (predicted) (Mlc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649099-S	ILMN_294053	RGD1561252_PREDICTED	XR_008133.1	XR_008133.1		366382	109476598	XR_008133.1	RGD1561252_predicted		ILMN_1360541	0002470066	S	252	CACCATCAGCAACGCCTGTGGAACCACTGGACTAATCCGTGCCATGGCGA				5q24	PREDICTED: Rattus norvegicus similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (Ubiquitin thiolesterase L3) (predicted) (RGD1561252_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647757-S	ILMN_59107	LOC500248	XM_580052.1	XM_580052.1		500248	62647757	XM_580052.1	LOC500248	XP_580052.1	ILMN_1368786	0006400575	S	665	ACCCAGCCATGTTGGAGCAAAAGGCAAACTCCGTGGCCCTTGATAGGCAG					PREDICTED: Rattus norvegicus LOC500248 (LOC500248), mRNA.					
Rattus norvegicus	RefSeq	GI_40538741-S	ILMN_272464	ATP5A1	NM_023093.1	NM_023093.1		65262	40538741	NM_023093.1	Atp5a1	NP_075581.1	ILMN_1359244	0002510161	S	1481	CCCATGGCTATTGAAGAACAGGTGGCTGTCATCTATGCAGGCGTCCGGGG	18	+	74742560-74742609	18q12.3	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle (Atp5a1), nuclear gene encoding mitochondrial protein, mRNA.	The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled [goid 275] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence IEA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IEA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence IEA]; Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation [goid 1937] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate [goid 6172] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IMP]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence ISS]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11968131-S	ILMN_289657	PRDX3	NM_022540.1	NM_022540.1		64371	11968131	NM_022540.1	Prdx3	NP_071985.1	ILMN_1349059	0003440551	S	1083	AGCCTGCCCTGAAGCTTGGTCTACAGTGAAGTAGCACATAGCACCAGTAC	1	-	267468655-267468704	1q55	Rattus norvegicus peroxiredoxin 3 (Prdx3), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A protein serine/threonine kinase that phosphorylates IkappaB, thereby targeting this for proteasomal degradation and allowing the nuclear translocation of kB. Composed of alpha, beta and gamma subunits, the latter not having kinase activity but presumed to play a regulatory role [goid 8385] [evidence ISS]	Maternally driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1893] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 33673] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence IEA]	Prx3	Prx3
Rattus norvegicus	RefSeq	GI_62667540	ILMN_267022	DUSP9	NM_001037973.1	NM_001037973.1		293847	83816928	NM_001037973.1	Dusp9	NP_001033062.1	ILMN_1650754	0006650368	S	2318	AGGGACCAAGCTGCAGACACACATGGTCATTCATTTCAGTCCACACCCCG	X	+	159541666-159541715	Xq37	Rattus norvegicus dual specificity phosphatase 9 (Dusp9), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence ISS]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]	MGC124968	MGC124968
Rattus norvegicus	RefSeq	GI_38454263-S	ILMN_262717	SLC1A4	NM_198763.1	NM_198763.1		305540	38454263	NM_198763.1	Slc1a4	NP_942058.1	ILMN_1374786	0006220630	S	1836	GATTCACCTTGACTCTGTTTGTGAACCCCCTTGAGCTGCCAGACCTCAGG	14	-	101123850-101123899	14q22	Rattus norvegicus solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 (Slc1a4), mRNA.	A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed movement of L-alanine, the levorotatory isomer of 2-aminopropanoic acid, into, out of, within or between cells [goid 15808] [evidence ISS]; The directed movement of L-cystine (also known as dicysteine) into, out of, within or between cells [goid 15811] [evidence ISS]; The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells [goid 15824] [evidence ISS]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence IMP]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence IDA]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence ISS]; The directed movement of threonine, (2R*,3S*)-2-amino-3-hydroxybutanoic acid, into, out of, within or between cells [goid 15826] [evidence ISS]; The directed movement of hydroxyproline into, out of, within or between cells [goid 34589] [evidence ISS]; The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory [goid 50890] [evidence ISS]	Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence ISS]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence ISS]; Catalysis of the transfer of L-alanine from one side of a membrane to the other. L-alanine, the levorotatory isomer of 2-aminopropanoic acid [goid 15180] [evidence ISS]; Catalysis of the transfer of L-cystine from one side of a membrane to the other [goid 15184] [evidence ISS]; Catalysis of the transfer of L-proline from one side of a membrane to the other. L-proline is pyrrolidine-2-carboxylic acid [goid 15193] [evidence ISS]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence IMP]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence IDA]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence ISS]; Catalysis of the transfer of L-threonine from one side of a membrane to the other. L-threonine is (2R*,3S*)-2-amino-3-hydroxybutanoic acid [goid 15195] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]; Catalysis of the transfer of L-hydroxyproline from one side of a membrane to the other [goid 34590] [evidence ISS]	ASCT1	ASCT1
Rattus norvegicus	RefSeq	GI_62658949-S	ILMN_57605	RGD1309762_PREDICTED	XM_222205.4	XM_222205.4		304503	109495993	XM_222205.4	RGD1309762_predicted	XP_222205.4	ILMN_1374879	0001230725	S	13943	CAGCGTCTGCAGGGCTCCCTCCTTCCGTCTTGAGTGGTTGAGCTAGTGCT	12	-	36319835-36319884	12q16	PREDICTED: Rattus norvegicus similar to KIAA0614 protein (predicted) (RGD1309762_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078780-S	ILMN_282938	RGD1305014	NM_001014025.1	NM_001014025.1		309029	62078780	NM_001014025.1	RGD1305014	NP_001014047.1	ILMN_1352073	0001340128	S	1463	GCTCGTTTGCATTGCGCTTGTTCCTGTAGATTGAGGTCTGTGCCAGCACC	1	-	190931561-190931610	1q41	Rattus norvegicus similar to RIKEN cDNA 2310057M21 (RGD1305014), mRNA.			Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34576554-S	ILMN_274742	STK25	NM_184049.1	NM_184049.1		373542	34576554	NM_184049.1	Stk25	NP_908938.1	ILMN_1364466	0001050113	S	1799	CTTGAGGGCTCACAGGGGCCCAAGATGGTCATAATTTGCCTTGTGGTGTC	9	-	92907919-92907968	9q36	Rattus norvegicus serine/threonine kinase 25 (STE20 homolog, yeast) (Stk25), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94619	MGC94619
Rattus norvegicus	RefSeq	GI_62644221-S	ILMN_65226	RGD1561877_PREDICTED	XM_575021.2	XM_575021.2		499695	109465486	XM_575021.2	RGD1561877_predicted	XP_575021.1	ILMN_1353349	0004540440	S	268	CTGCAGAAGGCACACAGCCTTCAGAGTCACAAGGACATCCAGCAGGTAAA	2	-	209725875-209725924	2q41	PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein L30 (predicted) (RGD1561877_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647380-S	ILMN_64267	LOC361962	XM_342261.2	XM_342261.2		361962	62647380	XM_342261.2	LOC361962	XP_342262.2	ILMN_1370556	0005290687	S	1087	TTGCCACAGAAACTAGAGGAGATGTTGTGATGACCCAGACACCACCGTCC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC361962), mRNA.					
Rattus norvegicus	RefSeq	GI_62667286-S	ILMN_54136	LOC367906	XM_579020.1	XM_579020.1		367906	62667286	XM_579020.1	LOC367906	XP_579020.1	ILMN_1352943	0001580100	S	65	GGGTGCTACTCCCTCGGACTACCCAAAACAATGGTGGAAGGGTTTCTCAG					PREDICTED: Rattus norvegicus similar to Chromobox protein homolog 1 (Heterochromatin protein 1 homolog beta) (HP1 beta) (Modifier 1 protein) (M31) (Heterochromatin protein p25) (LOC367906), mRNA.					
Rattus norvegicus	RefSeq	GI_62646102-S	ILMN_68448	RGD1563047_PREDICTED	XM_575270.2	XM_575270.2		499926	109469074	XM_575270.2	RGD1563047_predicted	XP_575270.2	ILMN_1361800	0005340541	S	1943	CTGGGTCCAATCTGACCTCTGGCCCCCAGGCCTCCCACAGGAAGGAACTT	3	+	144636233-144636282	3q41	PREDICTED: Rattus norvegicus similar to von Ebner minor salivary gland protein (predicted) (RGD1563047_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850607-S	ILMN_297516	SMPDL3A	NM_001005539.1	NM_001005539.1		294422	53850607	NM_001005539.1	Smpdl3a	NP_001005539.1	ILMN_1359823	0000450086	S	1392	GCAGTCACATCATTGGTGCTCCTGTGATCAGCTTGTGGAATACTGAGGGC	20	+	36844622-36844671	20q11	Rattus norvegicus sphingomyelin phosphodiesterase, acid-like 3A (Smpdl3a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine [goid 6685] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]	MGC95161	MGC95161
Rattus norvegicus	RefSeq	GI_20302009-S	ILMN_274037	PROM2	NM_138857.1	NM_138857.1		192211	20302009	NM_138857.1	Prom2	NP_620212.1	ILMN_1372421	0006020707	S	3936	AGGGTCTGGCCTGAAGGGGGTGAGCGCCCTTTCTGGTGGTAATCCTCTCT	3	-	115031153-115031202	3q36	Rattus norvegicus prominin 2 (Prom2), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]	Trprp; Promrp; Prom-rp	Trprp; Promrp; Prom-rp
Rattus norvegicus	RefSeq	GI_20302007-S	ILMN_263427	GS3	XM_001060252.1	XM_001060252.1		192210	109466187	XM_001060252.1	Gs3	XP_001060252.1	ILMN_1362787	0002970707	S	1691	CTGAGCCACAACCAGTGAGTGATGTCCTCATCAGCTGTGCAACTTGCCAC				2q16	PREDICTED: Rattus norvegicus putative regulation protein GS3 (Gs3), mRNA.					
Rattus norvegicus	RefSeq	GI_13592032-S	ILMN_270440	PTH2R	NM_031089.1	NM_031089.1		81753	13592032	NM_031089.1	Pth2r	NP_112351.1	ILMN_1349499	0000780072	S	1676	GTGACTCTACCTGGCTACGTCTGGAGTAGTTCTGAGCAGGACTGTCAACC	9	+	64049106-64049155	9q32	Rattus norvegicus parathyroid hormone 2 receptor (Pth2r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEA]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with parathyroid hormone to initiate a change in cell activity [goid 4991] [evidence IDA]; Combining with parathyroid hormone to initiate a change in cell activity [goid 4991] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40018601-S	ILMN_288037	FGFRL1	NM_199114.1	NM_199114.1		360903	40018601	NM_199114.1	Fgfrl1	NP_954545.1	ILMN_1356454	0001230646	S	2085	CCTGGAGGTTTGAGCCACACGCCCCTTGCTAGAGAGAAGGGCCTCGATAT	14	-	1551110-1551159	14p22	Rattus norvegicus fibroblast growth factor receptor-like 1 (Fgfrl1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Fgfr5	Fgfr5
Rattus norvegicus	RefSeq	GI_47576076-S	ILMN_269892	OLR96	NM_001001025.1	NM_001001025.1		405910	47576076	NM_001001025.1	Olr96	NP_001001025.1	ILMN_1372417	0002320070	S	536	CTTACTGTTTGCACCAGGATATAATCCGCCTTGCCTGCAATGATATCAGG	1	+	161118425-161118474	1q32	Rattus norvegicus olfactory receptor 96 (Olr96), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr96	Olr96
Rattus norvegicus	RefSeq	GI_62652210-S	ILMN_266469	RASSF3_PREDICTED	XM_001081068.1	XM_001081068.1		362886	109482027	XM_001081068.1	Rassf3_predicted	XP_001081068.1	ILMN_1358927	0004540398	S	735	CGCGCTGCTCAAGAAGTTTCAGGTGACCGAGAGTCCCACCAAGTTTGCGC				7q22	PREDICTED: Rattus norvegicus Ras association (RalGDS/AF-6) domain family 3 (predicted) (Rassf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656253-S	ILMN_300857	RGD1559538_PREDICTED	XM_001078805.1	XM_001078805.1		497930	109491025	XM_001078805.1	RGD1559538_predicted	XP_001078805.1	ILMN_1357160	0002470731	S	830	TGACTGGCACAAAGGAAGAGATTGATGGAGTGGCCAGAGCATACAGGGTG				10q24	PREDICTED: Rattus norvegicus similar to SCO cytochrome oxidase deficient homolog 1 (yeast) (predicted) (RGD1559538_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652248-S	ILMN_268008	MON2	XM_001053843.1	XM_001053843.1		314894	109482040	XM_001053843.1	Mon2	XP_001053843.1	ILMN_1362097	0003360017	S	4820	GTCACAACACCCCAGGAAGGCTACATCTCACGAATGGCACTCTCTGTGCT				7q22	PREDICTED: Rattus norvegicus MON2 homolog (yeast) (Mon2), mRNA.		The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes [goid 6895] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62649369-S	ILMN_283118	LOC689035	XM_001069267.1	XM_001069267.1		689035	109475223	XM_001069267.1	LOC689035	XP_001069267.1	ILMN_1371173	0006590551	S	878	CTGAGGACATGGCTAGGTGTTTGCTGTCTGCTGGCCTGACTGAGGACTCC	5	+	128161849-128161898	5q34	PREDICTED: Rattus norvegicus similar to CG5946-PB, isoform B (LOC689035), mRNA.			Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47087080-S	ILMN_266557	BAT5	NM_212531.1	NM_212531.1		361796	47087080	NM_212531.1	Bat5	NP_997696.1	ILMN_1355291	0006760500	S	1624	CATGAGTGTAGATGGACGGAGGCAACTGGCGCTGTTTCTGGCTCGGAAGC	20	-	3783057-3783067:3783188-3783226	20p12	Rattus norvegicus HLA-B associated transcript 5 (Bat5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	NG26	NG26
Rattus norvegicus	RefSeq	GI_47577678-S	ILMN_287140	OLR567	NM_001000326.1	NM_001000326.1		295806	47577678	NM_001000326.1	Olr567	NP_001000326.1	ILMN_1353740	0000730739	S	684	CAGCTCAGATGAGGGCAGGTTCAAAGCTTTCTCCACCTGTGCCTCCCACT	3	-	71196230-71196279	3q24	Rattus norvegicus olfactory receptor 567 (Olr567), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr567	Olr567
Rattus norvegicus	RefSeq	GI_62651452-S	ILMN_64814	LOC314394	XM_234491.2	XM_234491.2		314394	62651452	XM_234491.2	LOC314394	XP_234491.2	ILMN_1366073	0003870601	S	523	CTGACAAGGTTTGCGAGCTTGGCGCCGTCACTTTCCCTGAACCGGTTCCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1190005P17 (LOC314394), mRNA.					
Rattus norvegicus	RefSeq	GI_62649040-S	ILMN_54005	LOC500471	XM_575835.1	XM_575835.1		500471	62649040	XM_575835.1	LOC500471	XP_575835.1	ILMN_1365563	0005700341	S	654	CCCGAGGTTGAAGAAAGGGCTGAGCTTCCAGGCAGAACAAAGGATCTGAG					PREDICTED: Rattus norvegicus similar to alpha-2u-globulin (LOC500471), mRNA.					
Rattus norvegicus	RefSeq	GI_18426823-S	ILMN_271903	KHDRBS1	NM_130405.1	NM_130405.1		117268	18426823	NM_130405.1	Khdrbs1	NP_569089.1	ILMN_1362265	0002470477	S	2305	CTGCACTCCATGAAAAACTCACTTGGACACTGGGGCCGAAAGCTGACGCT				5q36	Rattus norvegicus KH domain containing, RNA binding, signal transduction associated 1 (Khdrbs1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	Progression from G2 phase to M phase of the mitotic cell cycle [goid 86] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IDA]; Any process that modulates the frequency, rate or extent of signal transduction [goid 9966] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of RNA from the nucleus to the cytoplasm [goid 46831] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Sam68; P62	Sam68; P62
Rattus norvegicus	RefSeq	GI_62642493	ILMN_294690	SHOC2	NM_001013155.1	NM_001013155.1		309548	61557120	NM_001013155.1	Shoc2	NP_001013173.1	ILMN_1650845	0004590377	S	837	AACCGCATAACCGCTGTGGAGAAGGACGTCAGAAACCTGCCGAGGCTCAG	1	+	260256091-260256140	1q55	Rattus norvegicus soc-2 (suppressor of clear) homolog (C. elegans) (Shoc2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865947-A	ILMN_288241	CREB3L2	NM_001012188.1	NM_001012188.1		362339	58865947	NM_001012188.1	Creb3l2	NP_001012188.1	ILMN_1376830	0005550504	S	3004	TGCACCCGCCTTAACTAATCGGGGCTGGAGTTGGTACCTTTCGTACATCC	4	-	64703693-64703742	4q22	Rattus norvegicus cAMP responsive element binding protein 3-like 2 (Creb3l2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Ra69	Ra69
Rattus norvegicus	RefSeq	GI_41281722-A	ILMN_266801	FMO4	NM_144562.1	NM_144562.1		246247	21389328	NM_144562.1	Fmo4	NP_653148.1	ILMN_1376656	0002480706	A	1548	GTAAGCTGCAAGGAAGGTTTTCCCCTTCCCGAATACTGTGGTACATCCCC	13	-	78476495-78476544	13q22	Rattus norvegicus flavin containing monooxygenase 4 (Fmo4), transcript variant 1, mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence NAS]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	MGC93155	MGC93155
Rattus norvegicus	RefSeq	GI_62640736-S	ILMN_51903	LOC308775	XM_218833.2	XM_218833.2		308775	62640736	XM_218833.2	LOC308775	XP_218833.2	ILMN_1371495	0004780148	S	1883	CCCGATCAGGTTCTATGCCCGGGACTCTGGCTTGCTGAAGTTTGAGATCC				1q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610034H20 (predicted) (LOC308775), mRNA.					
Rattus norvegicus	RefSeq	GI_62664224-S	ILMN_50931	PSD2_PREDICTED	XM_226019.4	XM_226019.4		307500	109506440	XM_226019.4	Psd2_predicted	XP_226019.4	ILMN_1375164	0006350435	S	1974	GCGGTCCCATGAGAATAAGTTGAGGCAGGTGACTGCAGAGCTGGCTGAGC	18	+	28642921-28642970	18p11	PREDICTED: Rattus norvegicus pleckstrin and Sec7 domain containing 2 (predicted) (Psd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981261-S	ILMN_272912	NES	NM_012987.1	NM_012987.1		25491	6981261	NM_012987.1	Nes	NP_037119.1	ILMN_1366067	0006770725	S	5762	GGGCCCAGAGCTTTCCCACAAGGCTGTTCTGGCCACAGCTTGCTAGCCTT	2	+	180060763-180060812	2q34	Rattus norvegicus nestin (Nes), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IDA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients [goid 31667] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164092-S	ILMN_295273	CCNB2	NM_001009470.1	NM_001009470.1		363088	57164092	NM_001009470.1	Ccnb2	NP_001009470.1	ILMN_1360587	0005550538	S	1256	CAGACCCTAGGCAGCCGGGCTTCCTTCCATCGTGTGCTTCTCAGATTTGT	8	-	74892290-74892330:74892331-74892339	8q24	Rattus norvegicus cyclin B2 (Ccnb2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108931	MGC108931
Rattus norvegicus	RefSeq	GI_62647633-S	ILMN_52790	LOC500209	XM_575561.1	XM_575561.1		500209	62647633	XM_575561.1	LOC500209	XP_575561.1	ILMN_1357716	0006370347	S	733	CTCCCAGCTCAAAGGCCCATCCATTAAAGACATCACCATTCAGGAGAGTG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500209), mRNA.					
Rattus norvegicus	RefSeq	GI_62646479-S	ILMN_64800	LOC502696	XM_578195.1	XM_578195.1		502696	62646479	XM_578195.1	LOC502696	XP_578195.1	ILMN_1366420	0000050148	S	1163	CATCCGAAAGAGGAGTTTGGAAGGAATGAGGAAGCAGACACGGGTGGAGC				3q43	PREDICTED: Rattus norvegicus similar to C20orf174 (LOC502696), mRNA.					
Rattus norvegicus	RefSeq	GI_62643270-S	ILMN_62662	MTFR1_PREDICTED	XM_230569.3	XM_230569.3		311403	109464622	XM_230569.3	Mtfr1_predicted	XP_230569.3	ILMN_1349571	0005890731	S	1172	CAACCTCAGAGCCAGCCCTGTTTGGCCCACATACATTGAAGTCTACAGGG	2	+	104332447-104332466:104333189-104333218	2q24	PREDICTED: Rattus norvegicus mitochondrial fission regulator 1 (predicted) (Mtfr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577978-S	ILMN_267705	OLR109	NM_001000952.1	NM_001000952.1		405298	47577978	NM_001000952.1	Olr109	NP_001000952.1	ILMN_1350735	0001580601	S	416	CTCCCCCTAGGATTATCAGGATGGGACTTGCAGTTGTTGTTAGGGGTGTG	1	-	161274469-161274518	1q32	Rattus norvegicus olfactory receptor 109 (Olr109), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr109	Olr109
Rattus norvegicus	RefSeq	GI_62652831	ILMN_278165	RGD1311547	XM_001077728.1	XM_001077728.1		362967	109482645	XM_001077728.1	RGD1311547	XP_001077728.1	ILMN_1650112	0004760739	S	1888	AGGTTCTAAGTGGTAAAGACCACGAAGGGCCAGGACCCACACAGGCCTCC				7q34	PREDICTED: Rattus norvegicus similar to CGI-96 protein; gastric cancer antigen Zg14 (RGD1311547), mRNA.					
Rattus norvegicus	RefSeq	GI_62664334-S	ILMN_62175	TCERG1_PREDICTED	XM_225983.4	XM_225983.4		307474	109506533	XM_225983.4	Tcerg1_predicted	XP_225983.3	ILMN_1351491	0004670450	S	3621	GTGGTAGGAGCTTGGAAATAGCACAGACTCCAGGAAAACTGAAGTTGGAG	18	+	35777296-35777345	18p11	PREDICTED: Rattus norvegicus transcription elongation regulator 1 (CA150) (predicted) (Tcerg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21489980-S	ILMN_282315	SPAG11B	NM_145087.1	NM_145087.1		246305	21489980	NM_145087.1	Spag11b	NP_659555.1	ILMN_1360259	0004120270	S	176	CATGTGCCGTTCTGGGGAGAGAAAGGGGGATATTTGCTCTGACCCCTGGA	16	-	75475003-75475052	16q12.5	Rattus norvegicus sperm associated antigen 11B (Spag11b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]		Bin1b	Bin1b
Rattus norvegicus	RefSeq	GI_62642769-S	ILMN_288993	CDK105	NM_134415.1	NM_134415.1		171456	19705550	NM_134415.1	Cdk105	NP_599242.1	ILMN_2039008	0005860327	S	314	AGACTCCACAGGGAGCAGTCCCTGCCTACCTGCTAGACAGAGAGGGGCAG	2	-	27611933-27611982	2q12	Rattus norvegicus CDK105 protein (Cdk105), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]		MGC112601	MGC112601
Rattus norvegicus	RefSeq	GI_62639206-S	ILMN_280354	SHKBP1_PREDICTED	XM_001071917.1	XM_001071917.1		292735	109461486	XM_001071917.1	Shkbp1_predicted	XP_001071917.1	ILMN_1371108	0006040600	S	2236	GGGGAGGCTTCCTGTTGGAGCCAGGAACTCTTTAGTGTGATCTTGGTCGC				1q21	PREDICTED: Rattus norvegicus Sh3kbp1 binding protein 1 (predicted) (Shkbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645611-S	ILMN_67315	CHAC1_PREDICTED	XM_342497.3	XM_342497.3		362196	109468669	XM_342497.3	Chac1_predicted	XP_342498.3	ILMN_1368718	0001780500	S	1139	GAGATAGACTTGATGGACCTAGAGAAAGCTGAGAAGGCATGGCGGGTGGC	3	+	105872666-105872715	3q35	PREDICTED: Rattus norvegicus ChaC, cation transport regulator-like 1 (E. coli) (predicted) (Chac1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21326468-S	ILMN_264629	SLC15A3	NM_139341.1	NM_139341.1		246239	21326468	NM_139341.1	Slc15a3	NP_647557.1	ILMN_1349041	0003440450	S	1770	GAGAGGACTCGTCAGGACCCAGACTCCCAGAACTCAACCAGCAGAGTCAG	1	+	213355914-213355963	1q43	Rattus norvegicus solute carrier family 15, member 3 (Slc15a3), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IDA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence NAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement [goid 5427] [evidence TAS]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Pht2	Pht2
Rattus norvegicus	RefSeq	GI_62649672-S	ILMN_264590	MTF1_PREDICTED	XM_001055855.1	XM_001055855.1		362591	109477194	XM_001055855.1	Mtf1_predicted	XP_001055855.1	ILMN_1364829	0001850309	S	1919	GTGGAGCAGGTGTACTTTACCACCGCAGTACCAGTAGCCAGTAGCACAGG				5q36	PREDICTED: Rattus norvegicus metal response element binding transcription factor 1 (predicted) (Mtf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27716972-S	ILMN_62680	LOC298903	XM_233981.1	XM_233981.1		298903	27716972	XM_233981.1	LOC298903	XP_233981.1	ILMN_1372862	0006620372	S	327	ACAGCCGACCCACAAGCTGGGAATTTGTTCTCTTCCAAGGCTGAGCAGGG					PREDICTED: Rattus norvegicus similar to nuclease sensitive element binding protein-1 (LOC298903), mRNA.					
Rattus norvegicus	RefSeq	GI_62645774-S	ILMN_52189	LOC360370	XM_346675.2	XM_346675.2		360370	62645774	XM_346675.2	LOC360370	XP_346676.2	ILMN_1361391	0006980309	S	2275	CAAACTGTCAAGAGCCTGCGGCTGCAGAGGCCACACATGGTCCAGACACT					PREDICTED: Rattus norvegicus protein tyrosine phosphatase alpha (LOC360370), mRNA.					
Rattus norvegicus	RefSeq	GI_62667173	ILMN_292564	TSPAN6	XM_001067945.1	XM_001067945.1		302313	109512318	XM_001067945.1	Tspan6	XP_001067945.1	ILMN_1650200	0000070377	S	1533	CCATTCCAGCTAGTCATCACATGGTGCCCATCATTGGCATTCCTGGGTGG				Xq34	PREDICTED: Rattus norvegicus tetraspanin 6 (Tspan6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27681214-S	ILMN_270717	LOC682475	XM_001059809.1	XM_001059809.1		682475	109507401	XM_001059809.1	LOC682475	XP_001059809.1	ILMN_2039713	0003370154	S	2407	TACGGGAGACAGGGGAACTGGAGCTGGAGGAAGACCTCTATGCCAAATTG					PREDICTED: Rattus norvegicus similar to Protein FAM38B, transcript variant 2 (LOC682475), mRNA.					
Rattus norvegicus	RefSeq	GI_16758865-A	ILMN_301902	RRAGB	NM_053972.1	NM_053972.1		117043	16758865	NM_053972.1	RragB	NP_446424.1	ILMN_1376562	0000430609	S	2017	CATGCCTGTGACCCCAGCAGTTGAGAAGCAGAGACAAGAGGATTGCTGCA	X	-	38353101-38353150	Xq14	Rattus norvegicus Ras-related GTP binding B (RragB), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; Interactions, directly with the host cell macromolecular machinery, to allow virus replication [goid 19048] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cytolysis [goid 45919] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]	Ragb; MGC105357	Ragb; MGC105357
Rattus norvegicus	RefSeq	GI_62718251-S	ILMN_50267	LOC501338	XM_576749.1	XM_576749.1		501338	62718251	XM_576749.1	LOC501338	XP_576749.1	ILMN_1367409	0001340524	S	445	GCAACCTCAGGTCTCAGAAAGTGCAAGAGAGCTGGAATTGGACACACAGC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501338), mRNA.					
Rattus norvegicus	RefSeq	GI_13928709-S	ILMN_268785	PPP1CA	NM_031527.1	NM_031527.1		24668	13928709	NM_031527.1	Ppp1ca	NP_113715.1	ILMN_1365456	0000380519	S	1104	ACAGAAATCATGCTGCCATGGGTCACACTGGCCTCTCAGGCCCACCCATC	1	+	206778048-206778097	1q42	Rattus norvegicus protein phosphatase 1, catalytic subunit, alpha isoform (Ppp1ca), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence EXP]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any complex of RNA and protein [goid 43021] [evidence IPI]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254746-S	ILMN_264223	ASAH1	NM_053407.2	NM_053407.2		84431	40254746	NM_053407.2	Asah1	NP_445859.2	ILMN_1368380	0000430397	S	2197	GGCAGACTGTACCCATTTAGTTTTGGACAGTCTCAGTTGTGTCATGATGC	16	+	54311018-54311067	16q12.1	Rattus norvegicus N-acylsphingosine amidohydrolase (acid ceramidase) 1 (Asah1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: N-acylsphingosine + H2O = a fatty acid + sphingosine [goid 17040] [evidence ISS]	Asah	Asah
Rattus norvegicus	RefSeq	GI_19745189-S	ILMN_269905	CAPN5	NM_134461.1	NM_134461.1		171495	19745189	NM_134461.1	Capn5	NP_604456.1	ILMN_1350118	0002320184	S	1757	CAGCTGTGCAGAGAGGGACCTCGACGCCAGAGTACAATGTGAAAGGCATC	1	-	155367985-155368034	1q32	Rattus norvegicus calpain 5 (Capn5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Htra3	Htra3
Rattus norvegicus	RefSeq	GI_58865807-A	ILMN_266125	CBX6	NM_001012119.1	NM_001012119.1		315136	58865807	NM_001012119.1	Cbx6	NP_001012119.1	ILMN_1376701	0004120707	S	1302	TTGCTTGCCTCGAACGGCTCAGTGTTGACCCAGGGATGGTGCTGGCAGTC	7	-	118063990-118064039	7q34	Rattus norvegicus chromobox homolog 6 (Cbx6), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The formation or destruction of chromatin structures [goid 6333] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57163994-S	ILMN_270008	STFA3L1	NM_001009177.1	NM_001009177.1		408215	57163994	NM_001009177.1	Stfa3l1	NP_001009177.1	ILMN_1369959	0001690347	S	228	AATGGACGTGGGGCACATAAAAGTCTTCCAGGGTCTTTCTGGAGAGGATG	11	-	66444509-66444558	11q22	Rattus norvegicus stefin A3-like 1 (Stfa3l1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650783-S	ILMN_269965	CDKL1	NM_001025121.1	NM_001025121.1		314198	68341968	NM_001025121.1	Cdkl1	NP_001020292.1	ILMN_1367106	0003360577	S	1436	GATAATGTCAGAAGACCTGGGCTGCAGTTTGCTCTCTGCCACACGCAGAG	6	-	91801328-91801377	6q24	Rattus norvegicus cyclin-dependent kinase-like 1 (CDC2-related kinase) (Cdkl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Cdkl1	Cdkl1
Rattus norvegicus	RefSeq	GI_56090607-S	ILMN_271911	CLN8	NM_001007686.1	NM_001007686.1		306619	56090607	NM_001007686.1	Cln8	NP_001007687.1	ILMN_1351165	0000130204	S	2117	ATCAACTGAAAACCCCATAGCCCCCAGGTCTGCTTTGTCGAGGCTCCAGC	16	-	79569803-79569852	16q12.5	Rattus norvegicus ceroid-lipofuscinosis, neuronal 8 (Cln8), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, where the change varies according to the age of the cell or organism [goid 1306] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, where the change varies according to the age of the cell or organism [goid 1306] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; The chemical reactions and pathways involving ceramides, any N-acylated sphingoid [goid 6672] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial membrane, the lipid bilayer surrounding a mitochondrion [goid 7006] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial membrane, the lipid bilayer surrounding a mitochondrion [goid 7006] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process that modulates the size of a cell [goid 8361] [evidence ISS]; Any process that modulates the size of a cell [goid 8361] [evidence IEA]; The process whereby neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21522] [evidence ISS]; The process whereby neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21522] [evidence IEA]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence ISS]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 44257] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 44257] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells [goid 44265] [evidence ISS]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification [goid 44267] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence ISS]; Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light [goid 45494] [evidence IEA]; The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system [goid 50881] [evidence ISS]; The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system [goid 50881] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor [goid 51348] [evidence ISS]; Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor [goid 51348] [evidence IEA]; The uptake of L-glutamate by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters [goid 51935] [evidence ISS]; The uptake of L-glutamate by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters [goid 51935] [evidence IEA]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins [goid 60052] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC93871	MGC93871
Rattus norvegicus	RefSeq	GI_62657010-S	ILMN_60454	ZFPN1A3_PREDICTED	XM_220921.4	XM_220921.4		303511	109488939	XM_220921.4	Zfpn1a3_predicted	XP_220921.4	ILMN_1372439	0002970537	S	1502	GCAACCACGAGGATCGCCAGAATCACATCTACCAACAGGGCCACATGGTC	10	-	87276112-87276161	10q31	PREDICTED: Rattus norvegicus zinc finger protein, subfamily 1A, 3 (Aiolos) (predicted) (Zfpn1a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718478-S	ILMN_63028	LOC501403	XM_576815.2	XM_576815.2		501403	109513682	XM_576815.2	LOC501403	XP_576815.2	ILMN_1363104	0004120440	S	1450	CAGCCTCTCTTCCGCAGCCGGAGGTCATCCTTTTGGACTCAGACCTGGAT	Un|NW_047902.1	-	124814-124863		PREDICTED: Rattus norvegicus similar to Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (MPc2) (LOC501403), mRNA.					
Rattus norvegicus	RefSeq	GI_62666985-S	ILMN_293199	RGD1562439_PREDICTED	XR_007955.1	XR_007955.1		503441	109511886	XR_007955.1	RGD1562439_predicted		ILMN_1355564	0002760600	S	1118	GAAAAAGCTGAAGCTGAAGCCGCAGCCAAGCCTGGCACTAAGGGCAAAGC				Xq22	PREDICTED: Rattus norvegicus similar to melanoma antigen family B, 4 (predicted) (RGD1562439_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657862-S	ILMN_265571	LOC498078	XR_008281.1	XR_008281.1		498078	109494333	XR_008281.1	LOC498078		ILMN_1370030	0004480086	S	667	AGATACTACGAGATCTGCCGCCACTCGGGAGGCACCATCCTGGGTCCTAA				11q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC498078), mRNA.					
Rattus norvegicus	RefSeq	GI_62648648	ILMN_289568	RGD1564981_PREDICTED	XR_008599.1	XR_008599.1		366303	109476081	XR_008599.1	RGD1564981_predicted		ILMN_1649946	0006940035	S	310	GTGGTAGTCACCTCTACAGGATGGGCTTTCCCGAGGCTGCCAGCTCTTTC				5q12	PREDICTED: Rattus norvegicus similar to Nonspecific lipid-transfer protein, mitochondrial precursor (NSL-TP) (predicted) (RGD1564981_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649670-S	ILMN_64182	LOC366465	XM_345579.2	XM_345579.2		366465	62649670	XM_345579.2	LOC366465	XP_345580.2	ILMN_1353133	0003780168	S	1802	CGAGTGGCGCTCCTTGGGCCGGAAGCAATGTACGTTCTCCACGACTAGGA					PREDICTED: Rattus norvegicus similar to Sf3a3 protein (LOC366465), mRNA.					
Rattus norvegicus	RefSeq	GI_13027460-S	ILMN_273295	TAS2R118	NM_023994.1	NM_023994.1		78980	13027460	NM_023994.1	Tas2r118	NP_076484.1	ILMN_1370406	0001580458	S	840	GAGCAACCCTACACTGAAAAAAGCACTCAGGTTGCAGTTCTGGAGCCCAG	4	-	50342547-50342596	4q22	Rattus norvegicus taste receptor, type 2, member 118 (Tas2r118), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]	The series of events required for a bitter taste stimulus to be received and converted to a molecular signal [goid 1580] [evidence ISS]; The series of events required for a bitter taste stimulus to be received and converted to a molecular signal [goid 1580] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with soluble bitter compounds to initiate a change in cell activity. These receptors are responsible for the sense of bitter taste [goid 33038] [evidence ISS]; Combining with soluble bitter compounds to initiate a change in cell activity. These receptors are responsible for the sense of bitter taste [goid 33038] [evidence IEA]	T2R3	T2R3
Rattus norvegicus	RefSeq	GI_62639248-S	ILMN_285815	PAK4_PREDICTED	XM_001073872.1	XM_001073872.1		292756	109461552	XM_001073872.1	Pak4_predicted	XP_001073872.1	ILMN_1359465	0002350707	S	1908	CCTCACCATCTCTGAAAGGCTTCTTGGATCGCCTGCTGGTGCGTGACCCA				1q21	PREDICTED: Rattus norvegicus p21 (CDKN1A)-activated kinase 4 (predicted), transcript variant 3 (Pak4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657103-S	ILMN_65707	RGD1309441_PREDICTED	XM_213467.4	XM_213467.4		287731	109489075	XM_213467.4	RGD1309441_predicted	XP_213467.1	ILMN_1362969	0003140148	S	611	TGCAGCGTTCACAAGCCCAACAACCACAGAAGGAGGCTGCCCTGTCATCC	10	-	91233088-91233137	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30656 (predicted) (RGD1309441_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576400-S	ILMN_291544	OLR1565	NM_001000908.1	NM_001000908.1		405218	47576400	NM_001000908.1	Olr1565	NP_001000908.1	ILMN_1349338	0000510390	S	477	GCACACAGCTCTTGTACTACACTTACCCTTTTGTAACTCAAGGGCCATTG	11	+	83503262-83503311	11q23	Rattus norvegicus olfactory receptor 1565 (Olr1565), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1565	Olr1565
Rattus norvegicus	RefSeq	GI_62648230-S	ILMN_274095	RGD1566110_PREDICTED	XM_001067934.1	XM_001067934.1		500337	109474323	XM_001067934.1	RGD1566110_predicted	XP_001067934.1	ILMN_1349360	0003780242	S	930	CTCTAAGGACTGCAAAGAGCTGAGGAGGTGTGCCTGTGAGAGGGTGGCAG				4q42	PREDICTED: Rattus norvegicus similar to C-type lectin-like receptor-1 (predicted) (RGD1566110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642288-S	ILMN_57284	PAPSS2_PREDICTED	XM_215288.4	XM_215288.4		294103	109460043	XM_215288.4	Papss2_predicted	XP_215288.4	ILMN_1358624	0002650706	S	1896	CGGGAAGGAGAAGATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAA	1	+	236675676-236675725	1q52	PREDICTED: Rattus norvegicus 3'-phosphoadenosine 5'-phosphosulfate synthase 2 (predicted) (Papss2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650551-S	ILMN_65423	LOC298871	XM_233972.3	XM_233972.3		298871	62650551	XM_233972.3	LOC298871	XP_233972.3	ILMN_1355347	0004150736	S	6038	CCAAAGTGCGGTTCTGTTGGGGATATGTGTAGCATCTCTGTCTGGCGGAG					PREDICTED: Rattus norvegicus similar to novel protein (LOC298871), mRNA.					
Rattus norvegicus	RefSeq	GI_8393029-S	ILMN_268059	CACNA1D	NM_017298.1	NM_017298.1		29716	8393029	NM_017298.1	Cacna1d	NP_058994.1	ILMN_1352115	0003190010	S	7506	CGCGATGAGGGGAGTGGGACCGGAACCGTTTTGTTAAGCGATGCCAGTTT	16	-	5383686-5383735	16p16	Rattus norvegicus calcium channel, voltage-dependent, L type, alpha 1D subunit (Cacna1d), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence TAS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEP]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a high voltage-gated channel [goid 8331] [evidence ISS];  [goid 15270] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659636-S	ILMN_60460	CREG_PREDICTED	XM_213921.3	XM_213921.3		289185	62659636	XM_213921.3	Creg_predicted	XP_213921.3	ILMN_1370948	0004120390	S	2737	TCTAGCAGAGGACCCAAGTTCAGTACCCGCAAGGGGTCAGACAGGCACAT				13q23	PREDICTED: Rattus norvegicus cellular repressor of E1A-stimulated genes (predicted) (Creg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659234-S	ILMN_298819	ACTR3	NM_031068.1	NM_031068.1		81732	70912365	NM_031068.1	Actr3	NP_112330.1	ILMN_1353820	0004480154	S	1773	GATGATTTCAACAAGCAGCCTCATGGGACTTGGCGTGCACTCTGGGTTCC	13	-	37861828-37861877	13q11	Rattus norvegicus ARP3 actin-related protein 3 homolog (yeast) (Actr3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]	Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Arp3; MGC116163	Arp3; MGC116163
Rattus norvegicus	RefSeq	GI_62650767-S	ILMN_53478	POLE2_PREDICTED	XM_216727.3	XM_216727.3		299112	109478228	XM_216727.3	Pole2_predicted	XP_216727.2	ILMN_1354271	0000380286	S	1486	CACCGTGACCAACACCGAGTGCCTCTGCATAAACCCTGGCTCCTTTCCAA	6	-	91156757-91156770:91157933-91157968	6q24	PREDICTED: Rattus norvegicus polymerase (DNA directed), epsilon 2 (p59 subunit) (predicted) (Pole2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980977-S	ILMN_299594	GPD2	NM_012736.1	NM_012736.1		25062	6980977	NM_012736.1	Gpd2	NP_036868.1	ILMN_1366549	0000840358	S	2200	CCTCATGAAGACTGCCGAGGAGAACTTGGACCGTAGAGTTCCAATCCCCG	3	+	39114385-39114434	3q12	Rattus norvegicus glycerol-3-phosphate dehydrogenase 2, mitochondrial (Gpd2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate [goid 9331] [evidence IEA]	The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol [goid 6072] [evidence ISS]; The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol [goid 6072] [evidence IEA]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor [goid 4368] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	mtGPDH	mtGPDH
Rattus norvegicus	RefSeq	GI_62653078-S	ILMN_299417	TCFCP2_PREDICTED	XM_001063604.1	XM_001063604.1		315309	109482900	XM_001063604.1	Tcfcp2_predicted	XP_001063604.1	ILMN_1357938	0006940451	S	1260	GCGTCCAAGGCTGACCATTTATGTCTGTCAGGAGTCGTTGCAGTTGAGGG					PREDICTED: Rattus norvegicus transcription factor CP2 (predicted) (Tcfcp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27706451-S	ILMN_280175	RGD1560455_PREDICTED	XM_001059284.1	XM_001059284.1		302377	109512189	XM_001059284.1	RGD1560455_predicted	XP_001059284.1	ILMN_1351279	0001770164	S	1090	GTGCAGTGGTATTCATAGTCTGCTTCACTCCTTACCATCTCAATTTCCCG				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630033H20 gene (predicted) (RGD1560455_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648336-S	ILMN_63822	LOC362464	XM_342787.3	XM_342787.3		362464	109472840	XM_342787.3	LOC362464	XP_342788.2	ILMN_1357077	0002100292	S	309	CAGGACAGATGCAATGGTGGAAAACCTTCCCCGGAGTCCCTTTACCTCTG	4	+	184394159-184394208	4q44	PREDICTED: Rattus norvegicus similar to aryl hydrocarbon receptor nuclear translocator-like 2 (LOC362464), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661638	ILMN_287124	FBXO16	NM_001013132.1	NM_001013132.1		305970	61557047	NM_001013132.1	Fbxo16	NP_001013150.1	ILMN_1649764	0003190047	S	1102	TCACGGAGCACCATCAGAATCACCCTGGGCTTCCATCACCCTCTCTGAGG	15	+	44736265-44736309	15p12	Rattus norvegicus F-box protein 16 (Fbxo16), mRNA.					
Rattus norvegicus	RefSeq	GI_62667207-S	ILMN_286746	RGD1561005_PREDICTED	XR_008121.1	XR_008121.1		367881	109512259	XR_008121.1	RGD1561005_predicted		ILMN_1367269	0001850092	S	201	AAGTATGAGGGCACCCAGCCTCCCCACAAGCTGCAGAACAATCGTGGGAG				Xq32	PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (predicted) (RGD1561005_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665507	ILMN_266896	LOC691918	XM_001080091.1	XM_001080091.1		691918	109468697	XM_001080091.1	LOC691918	XP_001080091.1	ILMN_1649861	0006110167	S	1562	GGCTGGTCTCAAACACATGATTTTCCTTGCCTTAGCCTCCCGAGTGCTGG	3	+	107383937-107383986	3q35	PREDICTED: Rattus norvegicus similar to Centrosomal protein of 27 kDa (Cep27 protein) (LOC691918), mRNA.					
Rattus norvegicus	RefSeq	GI_56090250-S	ILMN_288791	ST7L	NM_001007639.1	NM_001007639.1		295344	56090250	NM_001007639.1	St7l	NP_001007640.1	ILMN_1359231	0004150280	S	2281	CCACTGCAGGAAAGCATCTCTGATCTGTCAGTGCTAACCCACACGAGCAG	2	+	200198238-200198287	2q34	Rattus norvegicus suppression of tumorigenicity 7-like (St7l), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94245	MGC94245
Rattus norvegicus	RefSeq	GI_62649832-S	ILMN_49848	RGD1563417_PREDICTED	XM_575931.2	XM_575931.2		500564	109475650	XM_575931.2	RGD1563417_predicted	XP_575931.1	ILMN_1367181	0004280332	S	705	GACAGCACCCCCTCGTTGAAAACCTCGGTCGCTACTGGGAACCTGCTGGA	5	-	153509289-153509314:153509821-153509844	5q36	PREDICTED: Rattus norvegicus similar to LDL receptor adaptor protein (predicted) (RGD1563417_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667317-S	ILMN_279422	RGD1563084_PREDICTED	XR_007329.1	XR_007329.1		315912	109469972	XR_007329.1	RGD1563084_predicted		ILMN_1360930	0002100091	S	3104	CTAAGCCTGCAGATGGGAAGGAAACAGAATTGGGAAGAAAAAGCCCTGAG				Xq35	PREDICTED: Rattus norvegicus similar to FLJ20298 protein isoform a (predicted) (RGD1563084_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861859-S	ILMN_285023	LOC686213	XM_001072911.1	XM_001072911.1		686213	109463467	XM_001072911.1	LOC686213	XP_001072911.1	ILMN_1351495	0003120301	S	793	AGTCCCTGACGATAAATGGTAAGGAGCACCTGCTACGCTTGGATAACAAG					PREDICTED: Rattus norvegicus similar to DnaJ homolog subfamily B member 6 (Heat shock protein J2) (HSJ-2) (MRJ) (mDj4) (LOC686213), mRNA.					
Rattus norvegicus	RefSeq	GI_54020743-S	ILMN_267618	POLR2F	NM_031335.2	NM_031335.2		83503	54020743	NM_031335.2	Polr2f	NP_112625.1	ILMN_1370301	0000520647	S	1771	CTTGGACCCCAGCTCACGGAAGGCCAGACACCAAGATTTAGCAGAGGTGG	7	+	117137561-117137610	7q34	Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide F (Polr2f), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template [goid 5665] [evidence TAS]; RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template [goid 5666] [evidence TAS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template [goid 5736] [evidence TAS]; Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits [goid 30880] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The synthesis of RNA on a template of DNA [goid 6351] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase I (Pol I), originating at a Pol I-specific promoter [goid 6360] [evidence TAS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence TAS]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase III (Pol III), originating at a Pol III-specific promoter [goid 6383] [evidence TAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence TAS]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence ISS]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665404-S	ILMN_299364	CDK10	NM_001025722.1	NM_001025722.1		361434	71043645	NM_001025722.1	Cdk10	NP_001020893.1	ILMN_1369443	0002900735	S	1788	GAGAGGCCTAAGGGCCCCAGTCAGTATATGTTGGAACTGAAGCTGGGCAC	19	+	53552596-53552645	19q12	Rattus norvegicus cyclin-dependent kinase (CDC2-like) 10 (Cdk10), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC112847	MGC112847
Rattus norvegicus	RefSeq	GI_47576288-S	ILMN_273948	OLR1285	NM_001000459.1	NM_001000459.1		300595	47576288	NM_001000459.1	Olr1285	NP_001000459.1	ILMN_1359214	0002360142	S	683	TCCTCCACATTCGCTCCAGCGAGGGCGTGTCCAAAGCCTTCAGTACTTGT	8	-	41430635-41430684	8q22	Rattus norvegicus olfactory receptor 1285 (Olr1285), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1285	Olr1285
Rattus norvegicus	RefSeq	GI_62657695-S	ILMN_63228	LOC501754	XM_577154.1	XM_577154.1		501754	62657695	XM_577154.1	LOC501754	XP_577154.1	ILMN_1363161	0002480347	S	4039	CTCGACACGGCATTGCTGCGAAGATGAGTCAGTCAACAGAGGAACATGGT					PREDICTED: Rattus norvegicus similar to LRRG00132 (LOC501754), mRNA.					
Rattus norvegicus	RefSeq	GI_62654768-S	ILMN_51361	PKHD1_PREDICTED	XM_236979.4	XM_236979.4		301287	109485869	XM_236979.4	Pkhd1_predicted	XP_236979.4	ILMN_1372907	0000110332	S	8822	CCCTGGGTCTGTCCCCACCAGTTTCTGTGTTTCCAAGGATAGAGGAAGGA	9	-	18978898-18978947	9q13	PREDICTED: Rattus norvegicus polycystic kidney and hepatic disease 1 (predicted) (Pkhd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654770-S	ILMN_51361	PKHD1_PREDICTED	XM_236979.4	XM_236979.4		301287	109485869	XM_236979.4	Pkhd1_predicted	XP_236979.4	ILMN_1367955	0004280167	S	3120	CCAGCGAGCGTCAACTCCCAGCGTGGACTGTGTGTGGTATTCCCTTGGTA	9	-	19285432-19285435:19286035-19286080	9q13	PREDICTED: Rattus norvegicus polycystic kidney and hepatic disease 1 (predicted) (Pkhd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642898-S	ILMN_66675	ZSWIM6	XM_226779.4	XM_226779.4		310062	109464366	XM_226779.4	Zswim6	XP_226779.4	ILMN_1359146	0000670148	S	4687	CGCCAGAACTGGGGTTCGTGCCTCCCAGCCTAGGAAACTCAAATATCCTT	2	-	38938642-38938691	2q14	PREDICTED: Rattus norvegicus zinc finger, SWIM domain containing 6 (Zswim6), mRNA.					
Rattus norvegicus	RefSeq	GI_62078996-S	ILMN_288752	WDR1	NM_001014135.1	NM_001014135.1		360950	62078996	NM_001014135.1	Wdr1	NP_001014157.1	ILMN_1370760	0006290047	S	2685	TGCGTGTGTCGGAATCACTGGTAAATGTTGGCTGAGAACAATCCCTCCCC	14	+	77524302-77524351	14q21	Rattus norvegicus WD repeat domain 1 (Wdr1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656567-S	ILMN_56416	CRYBA1	XM_340846.3	XM_340846.3		25583	109488559	XM_340846.3	Cryba1	XP_340847.2	ILMN_1371518	0003830338	S	568	GACCATCACGGAGGAGACTACAAACACTGGAGAGAGTGGGGAACTCATGC	10	-	63759104-63759153	10q24-q25	PREDICTED: Rattus norvegicus crystallin, beta A1 (Cryba1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506410-S	ILMN_68012	ATP5H	NM_019383.1	NM_019383.1		56080	9506410	NM_019383.1	Atp5h	NP_062256.1	ILMN_1362182	0001090180	S	531	AGCAGCCCAGGAGGGAGCCCTGGCTGACTTGAATAAACATTTACATAGTC				5q36	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d (Atp5h), mRNA.	All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins [goid 276] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	ATPQ; MGC72861; Atp5jd	ATPQ; MGC72861; Atp5jd
Rattus norvegicus	RefSeq	GI_62648835-S	ILMN_267682	CCL27_PREDICTED	XM_001061271.1	XM_001061271.1		362505	109476298	XM_001061271.1	Ccl27_predicted	XP_001061271.1	ILMN_1366730	0001740369	S	251	GGCATCCGTGGAACAAGACTAAGGAGAAGCAAGAAGCCTTGCCACTGCCC				5q22	PREDICTED: Rattus norvegicus chemokine (C-C motif) ligand 27 (predicted) (Ccl27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648148-S	ILMN_264731	GPR162_PREDICTED	XM_001064191.1	XM_001064191.1		362436	109474210	XM_001064191.1	Gpr162_predicted	XP_001064191.1	ILMN_1356547	0006100075	S	2295	GGTCTCCTGAGAGCCGAGCTGTTGGACTTCCTTTGGGGTTAAGTGCAGGA				4q42	PREDICTED: Rattus norvegicus G protein-coupled receptor 162 (predicted) (Gpr162_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651551-S	ILMN_69510	LOC503097	XM_578617.1	XM_578617.1		503097	62651551	XM_578617.1	LOC503097	XP_578617.1	ILMN_1373602	0004120170	S	18	GACAAAAAATCTTTTGGTGTCCATTCCCAGGCCCAGCTGCAGTCTGGAGC					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region (clone X41-2) - mouse (fragment) (LOC503097), mRNA.					
Rattus norvegicus	RefSeq	GI_62652612-S	ILMN_55004	ZC3HDC3_PREDICTED	XM_235433.3	XM_235433.3		300032	62652612	XM_235433.3	Zc3hdc3_predicted	XP_235433.3	ILMN_1351036	0006370044	S	4376	TCAATGGGCCCTCTACGCAGGTAGTCTCCAAGACCTGCTCCTTAAGCCCC				7q34	PREDICTED: Rattus norvegicus zinc finger CCCH type domain containing 3 (predicted) (Zc3hdc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741881-S	ILMN_269489	ZPBP2	NM_001007011.1	NM_001007011.1		363676	55741881	NM_001007011.1	Zpbp2	NP_001007012.1	ILMN_1351625	0001230605	S	1279	ACCTCAGTGCCTCGGTGTACAAGGGGGAGTTCAAGTGTTAGTCGACGCTC	10	+	87379438-87379487	10q31	Rattus norvegicus zona pellucida binding protein 2 (Zpbp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_34855068-S	ILMN_58655	LOC310212	XM_226926.2	XM_226926.2		310212	34855068	XM_226926.2	LOC310212	XP_226926.2	ILMN_1365647	0002940685	S	1070	GAGAGCATCTTCTACAATATCTTCAGGGCAAATGGTGCTGGGAGCTGCGG					PREDICTED: Rattus norvegicus similar to SIRP beta 1 isoform 1 (LOC310212), mRNA.					
Rattus norvegicus	RefSeq	GI_62646280-S	ILMN_53917	LOC366237	XM_345460.2	XM_345460.2		366237	62646280	XM_345460.2	LOC366237	XP_345461.2	ILMN_1360591	0005130025	S	476	GGTGTCAGTACAGCTCAAGAGGGTACGGGGGAACAAGATTGACAAGCCCC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC366237), mRNA.					
Rattus norvegicus	RefSeq	GI_47577430-S	ILMN_262514	OLR461	NM_001000294.1	NM_001000294.1		295730	47577430	NM_001000294.1	Olr461	NP_001000294.1	ILMN_1361646	0003060433	S	541	GAAGTTCCTTCAGTTCTGAGACTGGCTTGTACTGACACTTCACTCACTGA	3	+	69067229-69067278	3q24	Rattus norvegicus olfactory receptor 461 (Olr461), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr461	Olr461
Rattus norvegicus	RefSeq	GI_62656521-S	ILMN_54024	LOC360567	XM_346894.2	XM_346894.2		360567	62656521	XM_346894.2	LOC360567	XP_346895.2	ILMN_1356555	0005900044	S	409	AGAGAGGTCCAGTCTCACCAGCAAGCGCCGGTGGCCTTCGCCTTCAGTTA				10q24	PREDICTED: Rattus norvegicus similar to novel protein (LOC360567), mRNA.					
Rattus norvegicus	RefSeq	GI_6981211-S	ILMN_274308	MMP11	NM_012980.1	NM_012980.1		25481	6981211	NM_012980.1	Mmp11	NP_037112.1	ILMN_1354279	0006100121	S	1890	CCATGGTAAGGAGATGCCCAGGGTTCCATGCTGCCACAGCTAAGGACCTG	20	+	13138104-13138153	20p12	Rattus norvegicus matrix metallopeptidase 11 (Mmp11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	ST3	ST3
Rattus norvegicus	RefSeq	GI_62652869-A	ILMN_279948	ARHGAP8_PREDICTED	XM_001078124.1	XM_001078124.1		315189	109482667	XM_001078124.1	Arhgap8_predicted	XP_001078124.1	ILMN_1376406	0006100632	S	1209	TGACTTTGGGCGGGGTAGTCGCTCCAGTGTGTCTGACTTTGAGGCAGCAG				7q34	PREDICTED: Rattus norvegicus Rho GTPase activating protein 8 (predicted) (Arhgap8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644509-A	ILMN_293213	SH3GLB1	NM_001011929.1	NM_001011929.1		292156	58865427	NM_001011929.1	Sh3glb1	NP_001011929.1	ILMN_1376652	0001410059	S	1336	CTCCGACTGGCTAATGGGGGAGAGAGGAAATCAGAAGGGCAAGGTGCCAA	2	-	242875061-242875110	2q44	Rattus norvegicus SH3-domain GRB2-like B1 (endophilin) (Sh3glb1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process by which a protein is incorporated into a mitochondrial membrane as an early step in apoptosis [goid 1844] [evidence ISS]; The process by which a protein is incorporated into a mitochondrial membrane as an early step in apoptosis [goid 1844] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids [goid 6654] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids [goid 6654] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis [goid 51084] [evidence ISS]; The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis [goid 51084] [evidence IEA]	Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence ISS]; Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 42171] [evidence ISS];  [goid 42171] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639394-S	ILMN_53034	LOC499128	XM_574421.1	XM_574421.1		499128	62639394	XM_574421.1	LOC499128	XP_574421.1	ILMN_1356136	0005570484	S	115	CCCATAAGCAGTGTTGGCATCAGGAACCGGCTTTAAGGTCGCAGGTCACC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S2 (LOC499128), mRNA.					
Rattus norvegicus	RefSeq	GI_62659703-S	ILMN_265578	RGD1559938_PREDICTED	XR_009102.1	XR_009102.1		498273	109499001	XR_009102.1	RGD1559938_predicted		ILMN_1351431	0006940403	S	1298	CAGCCGGAGGACAATTAGCCCTGCAAAGACTACGGAATGCACTGACCCCC				13q24	PREDICTED: Rattus norvegicus similar to spermine synthase (predicted) (RGD1559938_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649654-S	ILMN_63376	ZMYM4_PREDICTED	XM_233529.4	XM_233529.4		313598	109475493	XM_233529.4	Zmym4_predicted	XP_233529.4	ILMN_1373162	0001450520	S	4841	GAAACCTGAGGGGAGAAGTGTGGGTGAATTGGCAGGGAGAGTTCACAGAC	5	-	146268480-146268529	5q36	PREDICTED: Rattus norvegicus zinc finger, MYM-type 4 (predicted) (Zmym4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662382	ILMN_267142	RGD1306660_PREDICTED	XM_001065114.1	XM_001065114.1		290627	109503900	XM_001065114.1	RGD1306660_predicted	XP_001065114.1	ILMN_1649855	0004200017	S	386	ACGTTACACCAGTGAGATGCGGAGTGAGCTGTTGGGCACGGAGTCCTCTG				16p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010315L10 (predicted) (RGD1306660_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576868-S	ILMN_301141	OLR217	NM_001000199.1	NM_001000199.1		293364	47576868	NM_001000199.1	Olr217	NP_001000199.1	ILMN_1367058	0005670041	S	433	GTGGCCACATCATGGATCCTGGCATCTCTCATGGCCCTAGGATATACCGC	1	-	164102976-164103025	1q33	Rattus norvegicus olfactory receptor 217 (Olr217), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr217	Olr217
Rattus norvegicus	RefSeq	GI_62654782	ILMN_52120	RGD1566137_PREDICTED	XM_217361.4	XM_217361.4		301299	109485878	XM_217361.4	RGD1566137_predicted	XP_217361.3	ILMN_1649868	0005360347	S	508	GAAGAAGTTGCTGTGTCTGGCTGTTGCCGTCGGCCACATGAAGATGACCG	9	-	20068972-20069021	9q13	PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (predicted) (RGD1566137_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666097-S	ILMN_58161	LOC499446	XM_574769.1	XM_574769.1		499446	62666097	XM_574769.1	LOC499446	XP_574769.1	ILMN_1365364	0005290193	S	1050	GTTCAAGTGGAGATTCTCTCCCCAGGCCCTGTACTTCTTGAAGGTGCAGT					PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC499446), mRNA.					
Rattus norvegicus	RefSeq	GI_62658108-S	ILMN_280776	PIGX	XM_001073238.1	XM_001073238.1		288041	109494532	XM_001073238.1	Pigx	XP_001073238.1	ILMN_1358122	0001090520	S	853	GTGCAGGTGCCAGTGGGACTGACTATACACACCTCCTTAGTGTGCTCCGT				11q22	PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class X (Pigx), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage [goid 6506] [evidence IEA]; The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane [goid 16254] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_56605735-S	ILMN_296832	RGD1311745	NM_001008329.1	NM_001008329.1		301079	56605735	NM_001008329.1	RGD1311745	NP_001008330.1	ILMN_1372479	0005130138	S	654	CCCGTCCATCACTGCCCCTCTGTTTGGAAATACCAGACACTCACTACTGC	8	-	127690847-127690896	8q32	Rattus norvegicus similar to RIKEN cDNA 1110059G10 (RGD1311745), mRNA.				MGC94788	MGC94788
Rattus norvegicus	RefSeq	GI_34851492-S	ILMN_276590	RGD1566397_PREDICTED	XR_008450.1	XR_008450.1		291920	109508515	XR_008450.1	RGD1566397_predicted		ILMN_1358735	0001740301	S	342	GCTTGGGAAGAGGATTTGAAGCTACACGGCCAAGGGTCATAGGCTCCGTC				19p11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1566397_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639085-S	ILMN_273555	MILL2	NM_001017468.1	NM_001017468.1		365212	62945291	NM_001017468.1	Mill2	NP_001017468.1	ILMN_1365372	0003710402	S	963	CTCATGGGCTACGAGGCAAGAGGCGGAAGGACCCCATAGGACACACAATG	1	+	78216298-78216347	1q21	Rattus norvegicus Mill2 gene for MHC class I-like located near the LRC, 2, exon 3, partial cds, strain:LEW.1lm1 (Mill2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62661175-S	ILMN_270704	LOC498467	XM_573724.1	XM_573724.1		498467	62661175	XM_573724.1	LOC498467	XP_573724.1	ILMN_1355908	0000050102	S	938	CCTTTCCAATCTTGGGCTGAATTTGAAAGACCTTGAGATGTGGCATGGAA	15	+	19644019-19644068	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2F protein (LOC498467), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718580-S	ILMN_270704	LOC498467	XM_573724.1	XM_573724.1		498467	62661175	XM_573724.1	LOC498467	XP_573724.1	ILMN_1359701	0000050452	S	907	GACAACACCTCCCGCATCTCAGTCCTTGTAACCTTTCCAATCTTGGGCTG	15	+	19643988-19644037	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2F protein (LOC498467), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661201	ILMN_270704	LOC498467	XM_573724.1	XM_573724.1		498467	62661175	XM_573724.1	LOC498467	XP_573724.1	ILMN_1651032	0006770041	S	878	CCAGCAGGAGCACTGAGGGTGCAAAGATTGACAACACCTCCCGCATCTCA	15	+	19643959-19644008	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2F protein (LOC498467), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661187-S	ILMN_270704	LOC498467	XM_573724.1	XM_573724.1		498467	62661175	XM_573724.1	LOC498467	XP_573724.1	ILMN_1356590	0006900253	S	1103	GTTTGCAAGGCCAGCAACAGGCTGGAGTTACATGTTGAAAAATCAGCATG	15	+	19644184-19644233	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2F protein (LOC498467), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662671-S	ILMN_274367	LRP2BP	NM_001017443.1	NM_001017443.1		290753	62945241	NM_001017443.1	Lrp2bp	NP_001017443.1	ILMN_1360899	0005270593	S	1163	GCTTGCCGTCTGAACCCTACACTGGCAGATGAACTTCACTCCTTACTTAT	16	-	49523921-49523970	16q11	Rattus norvegicus Lrp2 binding protein (Lrp2bp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Lrp2bp	Lrp2bp
Rattus norvegicus	RefSeq	GI_57164050-S	ILMN_294787	V1RM1	NM_001009525.1	NM_001009525.1		494245	57164050	NM_001009525.1	V1rm1	NP_001009525.1	ILMN_1368134	0004280403	S	829	CCTGCATTCAGCCCCTTTCTGTTCATCACCACTGACAGACATATCTCTTA	1	-	62874963-62875012	1q12	Rattus norvegicus vomeronasal 1 receptor, M1 (V1rm1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645362-S	ILMN_55082	RANBP3_PREDICTED	XM_342459.2	XM_342459.2		362159	62645362	XM_342459.2	Ranbp3_predicted	XP_342460.1	ILMN_1354425	0003190364	S	1094	GCTTTCCTCTGCCAGGCCTAAGTGCCAGCAAGGACACCAGAGGCTGCCTA					PREDICTED: Rattus norvegicus RAN binding protein 3 (predicted) (Ranbp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424149-S	ILMN_270076	KLRK1	NM_133512.1	NM_133512.1		24934	19424149	NM_133512.1	Klrk1	NP_598196.1	ILMN_1353944	0004200647	S	859	TGTGGGGCCAAGGAACTATGAGGCAGGGGATGGAGGGAGCAAGAGGACTA	4	-	166914989-166915038	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily K, member 1 (Klrk1), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation [goid 2223] [evidence ISS]; Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation [goid 2223] [evidence IEA]; The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor [goid 30101] [evidence ISS]; The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor [goid 30101] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity [goid 45954] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity [goid 45954] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Combining with an MHC class Ib protein complex to initiate a change in cellular activity. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families [goid 32394] [evidence ISS]; Combining with an MHC class Ib protein complex to initiate a change in cellular activity. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families [goid 32394] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence ISS]; A receptor found on the surface of natural killer cells which binds Class I MHC antigens and is required for activation of NK activity. It belongs to the Ly49i family [goid 45233] [evidence IDA]	Nkrp2; NKG2D	Nkrp2; NKG2D
Rattus norvegicus	RefSeq	GI_15147220-S	ILMN_296791	GAL	NM_033237.1	NM_033237.1		29141	15147220	NM_033237.1	Gal	NP_150240.1	ILMN_1370600	0001170364	S	423	GTTTCTCAGTTTCTTGCACCTTAAAGAGGCCGGGGCCCTCGACAGCCTGC	1	-	205936578-205936602:205937848-205937872	1q42	Rattus norvegicus galanin prepropeptide (Gal), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence TAS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids [goid 31943] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence IDA]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence TAS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence TAS]	Galn	Galn
Rattus norvegicus	RefSeq	GI_11968089-S	ILMN_289212	ACADS	NM_022512.1	NM_022512.1		64304	11968089	NM_022512.1	Acads	NP_071957.1	ILMN_1351346	0000540102	S	1417	TGTCAGCTCAGAATGGGGCGGCGTGGCTACCTCTTTACCCCCCACCAACA	12	+	42774197-42774246	12q16	Rattus norvegicus acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain (Acads), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence TAS]	The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence NAS]; Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IDA]; Catalysis of the reaction: butanoyl-CoA + ETF = 2-butenoyl-CoA + reduced ETF [goid 4085] [evidence TAS]; Catalysis of the reaction: butanoyl-CoA + ETF = 2-butenoyl-CoA + reduced ETF [goid 4085] [evidence IDA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	Scad	Scad
Rattus norvegicus	RefSeq	GI_62666810-S	ILMN_276107	RGD1559763_PREDICTED	XM_001067753.1	XM_001067753.1		302670	109511706	XM_001067753.1	RGD1559763_predicted	XP_001067753.1	ILMN_1364937	0000630025	S	1787	CTGGCAGGAGGAGGTCAGGTAGTAGAGACAAAACCACCCAGAGTCCCAAA				Xq21	PREDICTED: Rattus norvegicus similar to U2af1-rs2 (predicted) (RGD1559763_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649081-S	ILMN_56209	LOC298033	XM_232945.3	XM_232945.3		298033	62649081	XM_232945.3	LOC298033	XP_232945.3	ILMN_1358499	0006420458	S	1754	CCAACAGACCTCCATCCATGCGTATCAGAGGACACCAGACTCGCCAGAGG				5q24	PREDICTED: Rattus norvegicus similar to Sorting nexin 7 (predicted) (LOC298033), mRNA.					
Rattus norvegicus	RefSeq	GI_62645988-S	ILMN_286171	XRN2_PREDICTED	XM_001055882.1	XM_001055882.1		362229	109470961	XM_001055882.1	Xrn2_predicted	XP_001055882.1	ILMN_1361377	0004480270	S	3258	GTACCCTTTGCCACCGCCCTCGGGAAGATACAGTTGGAATTAGGCTTTTG				3q41	PREDICTED: Rattus norvegicus 5'-3' exoribonuclease 2 (predicted) (Xrn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656525-S	ILMN_54204	LOC360568	XM_340844.3	XM_340844.3		360568	109488515	XM_340844.3	LOC360568	XP_340845.2	ILMN_1353748	0002940647	S	2080	CCCACTACTTGGAGGCTGAGGCAGGAAGACTGCTATGGGTGTAAGGTCAG	10	+	62133388-62133437	10q24	PREDICTED: Rattus norvegicus similar to Hypothetical UPF0049 protein ZK1128.2 in chromosome III (LOC360568), mRNA.					
Rattus norvegicus	RefSeq	GI_62718826-S	ILMN_64806	LOC501491	XM_576897.2	XM_576897.2		501491	109514014	XM_576897.2	LOC501491	XP_576897.2	ILMN_1349800	0001660647	S	1421	GGCTCTTCCCGAGGTCATGATGGCATGAGCCAATGTGGTGGAGGTAGTAC	Un|NW_047990.1	-	915588-915637		PREDICTED: Rattus norvegicus similar to GC-rich promoter binding protein 1-like 1 (LOC501491), mRNA.					
Rattus norvegicus	RefSeq	GI_61557332-S	ILMN_270031	RND1	NM_001013222.1	NM_001013222.1		362993	61557332	NM_001013222.1	Rnd1	NP_001013240.1	ILMN_1364005	0005290458	S	1313	GGAGAGGTGACATCACACATTCACACGCTTCTCACTGAAGTCCCCCGGGC	7	-	137418765-137418814	7q36	Rattus norvegicus Rho family GTPase 1 (Rnd1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence IEA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence IEA]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development [goid 16322] [evidence IEA]; The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development [goid 16322] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109441	MGC109441
Rattus norvegicus	RefSeq	GI_51592091-S	ILMN_263699	BAT1	NM_133300.2	NM_133300.2		114612	51592091	NM_133300.2	Bat1	NP_579834.2	ILMN_1363985	0002340129	S	1462	GTTGTAGAAGAGGACGAAGGGGTCAGGGAGGAAACACTACTGCCCCACCC	20	-	3611255-3611304	20p12	Rattus norvegicus HLA-B associated transcript 1 (Bat1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Bat1	Bat1
Rattus norvegicus	RefSeq	GI_62655181-S	ILMN_47934	ABCA12_PREDICTED	XM_237242.4	XM_237242.4		301482	109486233	XM_237242.4	Abca12_predicted	XP_237242.4	ILMN_1350549	0003990647	S	7541	GATCAGCACCTGAGCATGCTAGAGTACCATGTGCCAGTCACAGCAGGAGG	9	-	70329833-70329882	9q33	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 12 (predicted) (Abca12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47155562-S	ILMN_277897	KIF13B	NM_213626.1	NM_213626.1		305967	47155562	NM_213626.1	kif13B	NP_998791.1	ILMN_1370251	0000770390	S	4984	CCAACTGATTTCCAGGAGGGAACGTGGATTGGTGTGGAGCTGGACCTGCC	15	+	44164087-44164136	15p12	Rattus norvegicus kinesin 13B (kif13B), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641444-S	ILMN_63624	LOC502363	XM_577835.1	XM_577835.1		502363	62641444	XM_577835.1	LOC502363	XP_577835.1	ILMN_1369169	0002120435	S	38	GCCTAAGACACTCTGGGTCATTTTACTCCCCCTCTGTAGTCACAGCGTGC					PREDICTED: Rattus norvegicus similar to QRWT5810 (LOC502363), mRNA.					
Rattus norvegicus	RefSeq	GI_62665699-S	ILMN_267932	LEMD2	NM_001039032.1	NM_001039032.1		361807	84781657	NM_001039032.1	Lemd2	NP_001034121.1	ILMN_1354127	0006550110	S	809	GGTTCAGGACCACTATGTGGACTGGGAACAGGACATGGAGCGCTACCCCT	20	-	5426655-5426682:5428776-5428797	20p12	Rattus norvegicus LEM domain containing 2 (Lemd2), mRNA.				MGC112806	MGC112806
Rattus norvegicus	RefSeq	GI_62648103-S	ILMN_52367	IL17R_PREDICTED	XM_232247.4	XM_232247.4		312679	109472562	XM_232247.4	Il17r_predicted	XP_232247.3	ILMN_1356655	0005670348	S	3350	CTGCGGCTTGGGTATCAAGGAGCCAGAGTAAGCTGTGTGCTAGGGTGGGA	4	+	156861719-156861768	4q42	PREDICTED: Rattus norvegicus interleukin 17 receptor (predicted) (Il17r_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667023-S	ILMN_263880	RGD1566205_PREDICTED	XR_008412.1	XR_008412.1		503447	109512018	XR_008412.1	RGD1566205_predicted		ILMN_1373163	0006650037	S	644	GAGCAGCCAACATCTGAGAGGACAGAGTTCCTTCTGGAGCATCATAGTGG					PREDICTED: Rattus norvegicus similar to p34 protein (predicted) (RGD1566205_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605707-S	ILMN_273916	MKRN2	NM_001008314.1	NM_001008314.1		297525	56605707	NM_001008314.1	Mkrn2	NP_001008315.1	ILMN_1362843	0000050338	S	1769	GGATGGCTATTGCATTCCGTCCAGTGTCTCAAGTCAACAGGCGTGTGCAG	4	+	151752187-151752236	4q42	Rattus norvegicus makorin, ring finger protein, 2 (Mkrn2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95133	MGC95133
Rattus norvegicus	RefSeq	GI_16758785-S	ILMN_265662	CGA	NM_053918.1	NM_053918.1		116700	16758785	NM_053918.1	Cga	NP_446370.1	ILMN_1372276	0001570735	S	235	GGCATACCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGA	5	+	51548723-51548772	5q21	Rattus norvegicus glycoprotein hormones, alpha subunit (Cga), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the gonad over time, from its formation to the mature structure. The gonad is an animal organ that produces gametes; in some species it also produces hormones [goid 8406] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The regulated release of luteinizing hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary [goid 32275] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organ of an organism [goid 46621] [evidence ISS]; The regulated release of follicle-stimulating hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary [goid 46884] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	pituitary hormone	pituitary hormone
Rattus norvegicus	RefSeq	GI_62661439-S	ILMN_299143	RGD1566241_PREDICTED	XR_007305.1	XR_007305.1		364381	109502359	XR_007305.1	RGD1566241_predicted		ILMN_1353301	0000450112	S	339	CCCACAAACAGCGAAAGGAACACAAGAACAGAATGAAGAAGGTCGGGGGG				15p13	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (predicted) (RGD1566241_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653937-S	ILMN_54914	SLC37A2_PREDICTED	XM_345918.2	XM_345918.2		367056	62653937	XM_345918.2	Slc37a2_predicted	XP_345919.2	ILMN_1352375	0006180086	S	1725	GTGGCCATGAATGTCTTCCACCCAGACAACGGAGAGACACGTGCAGCAGG				8q21	PREDICTED: Rattus norvegicus solute carrier family 37 (glycerol-3-phosphate transporter), member 2 (predicted) (Slc37a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659648-S	ILMN_61099	POGK_PREDICTED	XM_222846.4	XM_222846.4		304941	109498117	XM_222846.4	Pogk_predicted	XP_222846.4	ILMN_1356636	0001580075	S	1640	AGTATTCCAACTGGCTTCTGGCTGGGAACCTGGCACTGAGCCCCACTGGA	13	-	82130857-82130906	13q23	PREDICTED: Rattus norvegicus pogo transposable element with KRAB domain (predicted) (Pogk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648456-S	ILMN_69774	ASB15	XM_216108.4	XM_216108.4		360206	109472865	XM_216108.4	Asb15	XP_216108.4	ILMN_1352318	0007000041	S	1206	TCTGTGTGCAAAACTGAAGTCCGTGCTAGAAGTACAGAGAGAATGGCCGG	4|NW_047702.1	+	175553-175602		PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing protein 15 (Asb15), mRNA.	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8154] [evidence IEA]	Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651096-S	ILMN_291372	TMEM63C_PREDICTED	XM_001061327.1	XM_001061327.1		314332	109479707	XM_001061327.1	Tmem63c_predicted	XP_001061327.1	ILMN_1361284	0005390020	S	2386	GACTGTGTTTGATGTGGAACCAAGCAGCACCACCTCCACTCCCACCTCCC				6q31	PREDICTED: Rattus norvegicus transmembrane protein 63c (predicted) (Tmem63c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16757993-S	ILMN_271452	PKM2	NM_053297.1	NM_053297.1		25630	16757993	NM_053297.1	Pkm2	NP_445749.1	ILMN_1366452	0001190458	S	1320	GGCCATGGGCAGCGTGGAGGCCTCTTATAAATGTTTAGCAGCAGCTTTGA	8	+	63504361-63504410	8q24	Rattus norvegicus pyruvate kinase, muscle (Pkm2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence ISS]; Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate [goid 4743] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	PKM12; Pk3	PKM12; Pk3
Rattus norvegicus	RefSeq	GI_62641865-S	ILMN_62390	LOC499316	XM_574620.1	XM_574620.1		499316	62641865	XM_574620.1	LOC499316	XP_574620.1	ILMN_1360158	0002190739	S	1165	AGAGAAAGCAGGAGGAGCTGAGCAAAACGCTCGCAGCCATGAGGAAGGGG				1q43	PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC499316), mRNA.					
Rattus norvegicus	RefSeq	GI_47577818-S	ILMN_269421	OLR121	NM_001000155.1	NM_001000155.1		293257	47577818	NM_001000155.1	Olr121	NP_001000155.1	ILMN_1354292	0001090364	S	605	CTGTGGTTCTTTCGGTTATTATAGTGGATATAGGAATGATAGGGACATCC	1	-	161457367-161457416	1q32	Rattus norvegicus olfactory receptor 121 (Olr121), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr121	Olr121
Rattus norvegicus	RefSeq	GI_62639290-S	ILMN_289362	SARS2_PREDICTED	XM_001078462.1	XM_001078462.1		292759	109461593	XM_001078462.1	Sars2_predicted	XP_001078462.1	ILMN_1353642	0006220451	S	1455	GCAAAAGGATGGTTCAGTCCTCGTACCTGCCGCTCTCCAGCCCTACCTAG				1q21	PREDICTED: Rattus norvegicus seryl-tRNA synthetase 2 (predicted) (Sars2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646254-S	ILMN_267668	ACTR5_PREDICTED	XM_001068055.1	XM_001068055.1		362258	109471219	XM_001068055.1	Actr5_predicted	XP_001068055.1	ILMN_1371640	0004050017	S	1850	GTGACTGGGCCTTGGATCACCTAGAAGACAGTGGAGCCTGGGTCACCAGA				3q42	PREDICTED: Rattus norvegicus ARP5 actin-related protein 5 homolog (yeast) (predicted) (Actr5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981053-S	ILMN_284689	HTR1A	NM_012585.1	NM_012585.1		24473	6981053	NM_012585.1	Htr1a	NP_036717.1	ILMN_1372545	0004850348	S	942	CTCCTATGCCCCCGCCTGCTTGGAGAGAAAAAATGAGCGCAATGCTGAAG	2	+	36435459-36435508	2q13	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 1A (Htr1a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a serotonin receptor binding to one of its physiological ligands [goid 7210] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IMP]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence ISS]	RAT5HT1A; 5HT1A	RAT5HT1A; 5HT1A
Rattus norvegicus	RefSeq	GI_62645920-S	ILMN_276170	TXNDC13	XM_001081259.1	XM_001081259.1		296182	109470871	XM_001081259.1	Txndc13	XP_001081259.1	ILMN_1360667	0006770044	S	1769	GCTGCTCTGTAGTGAGAAGAGCAGGCAGCAGTGATCTGCATGCGTTACCC				3q36	PREDICTED: Rattus norvegicus thioredoxin domain containing 13 (Txndc13), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62662331-S	ILMN_62799	RGD1564225_PREDICTED	XM_224656.4	XM_224656.4		290583	109503110	XM_224656.4	RGD1564225_predicted	XP_224656.4	ILMN_1363222	0000580458	S	212	GGGCCCAGACTGATGTTGAGCAGATGAACACGCTGGTTCCTGCTCTGAAT	16	-	11813529-11813578	16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1564225_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11693163-S	ILMN_289130	SAFB	NM_022394.1	NM_022394.1		64196	11693163	NM_022394.1	Safb	NP_071789.1	ILMN_1350108	0004050338	S	2759	ACATGATGAATCGTGGTGGCATGTCAGGGCGAGGCAGTTTTGCCCCCGGA	Un|NW_047865.1	-	473804-473825:473928-473955		Rattus norvegicus scaffold attachment factor B (Safb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence ISS]; The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42445] [evidence ISS]; Any process that modulates the frequency, rate or extent of mRNA processing, those processes involved in the conversion of a primary mRNA transcript into a mature mRNA prior to its translation into polypeptide [goid 50684] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_16758923-S	ILMN_287712	CSDE1	NM_054006.1	NM_054006.1		117180	16758923	NM_054006.1	Csde1	NP_446458.1	ILMN_1365521	0000540438	S	3559	ATGACAAGGGTCAGCTCAGGGGTTGTGGGGGAGGGCGTTTTCATCTTCCC				2q34	Rattus norvegicus cold shock domain containing E1, RNA binding (Csde1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666153-S	ILMN_60751	RGD1561777_PREDICTED	XM_574787.2	XM_574787.2		499463	109509602	XM_574787.2	RGD1561777_predicted	XP_574787.2	ILMN_1366578	0006550341	S	1474	GGTCTGTAATGTGAATGAAAGGAAAACATCTCAGGGTCAGAACACTCTGC	20	-	44124367-44124408:44124409-44124416	20q12	PREDICTED: Rattus norvegicus similar to Na+ dependent glucose transporter 1 (predicted) (RGD1561777_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576028-S	ILMN_289908	OLR1437	NM_001000015.1	NM_001000015.1		287325	47576028	NM_001000015.1	Olr1437	NP_001000015.1	ILMN_2039076	0007200575	S	298	CAAGTCTTTACGTTTTTGACTCTTGCTGGCTGTGAAGCCCTCCTGCTGGG	10	+	44651713-44651762	10q22	Rattus norvegicus olfactory receptor 1437 (Olr1437), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1437	Olr1437
Rattus norvegicus	RefSeq	GI_62660735-S	ILMN_52558	LOC498401	XM_573643.1	XM_573643.1		498401	62660735	XM_573643.1	LOC498401	XP_573643.1	ILMN_1372998	0003390575	S	96	TTAACAGCAGCTAGGTTGGTCAAAGGGAGTAAAGGGAGGGGTCTCTCTCC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498401), mRNA.					
Rattus norvegicus	RefSeq	GI_62661253-S	ILMN_69966	LOC501976	XM_577404.1	XM_577404.1		501976	62661253	XM_577404.1	LOC501976	XP_577404.1	ILMN_1373389	0003130167	S	748	CTGGGCAGAAGGACCCAGAAAAGGTGGCCCAGGAAAAGTTCTCGTCCATG				15p14	PREDICTED: Rattus norvegicus similar to farnesyl pyrophosphate synthase (LOC501976), mRNA.					
Rattus norvegicus	RefSeq	GI_47834325-S	ILMN_290067	OLR1749	NM_001001429.1	NM_001001429.1		294203	47834325	NM_001001429.1	Olr1749	NP_001001429.1	ILMN_1352079	0000670594	S	657	TGCCAGGGCAGTGCTGAGGATAAACTCCACTGAAGCATGGAAAAAGGCTT	20	+	1536565-1536614	20p12	Rattus norvegicus olfactory receptor 1749 (Olr1749), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or2; Olr1749; MOR256-20	Or2; Olr1749; MOR256-20
Rattus norvegicus	RefSeq	GI_62639071-S	ILMN_262448	RGD1560435_PREDICTED	XM_001064185.1	XM_001064185.1		308393	109461274	XM_001064185.1	RGD1560435_predicted	XP_001064185.1	ILMN_1349199	0003940164	S	2376	GCCCAAATGCCGTTAGTGCCGCAGATGTCACTACGAGCCCCGTCTCTTGT				1q21	PREDICTED: Rattus norvegicus similar to KIAA1183 protein (predicted) (RGD1560435_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660741-S	ILMN_281912	NIPSNAP1	XM_341249.2	XM_341249.2		360971	62660741	XM_341249.2	Nipsnap1	XP_341250.1	ILMN_1353210	0005900273	S	1713	GCAGAACCAGTAGGCCTGTGGAGTGGGTTCAGTGATTCTGGGGTCTCTTC	14	+	85556401-85556450	14q21	PREDICTED: Rattus norvegicus 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) (Nipsnap1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62658342-S	ILMN_66055	LOC501792	XM_577201.1	XM_577201.1		501792	62658342	XM_577201.1	LOC501792	XP_577201.1	ILMN_1362239	0001940162	S	1724	TATGGAGGTCTGGCGACTCCCACCACTGTCGAGGAGGAAACCCAGTGTGA					PREDICTED: Rattus norvegicus similar to envelope protein (LOC501792), mRNA.					
Rattus norvegicus	RefSeq	GI_57114235-S	ILMN_280027	V1RG11	NM_001008918.1	NM_001008918.1		494267	57114235	NM_001008918.1	V1rg11	NP_001008918.1	ILMN_1353552	0001570072	S	683	ACATTCACAGTACCCAGCATTCCTTCAGAGTCTCTCCTGAAGACAGAGCC	1	-	71979532-71979581	1q21	Rattus norvegicus vomeronasal 1 receptor, G11 (V1rg11), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643930	ILMN_49424	LOC365881	XM_345258.2	XM_345258.2		365881	62643930	XM_345258.2	LOC365881	XP_345259.2	ILMN_1650697	0003170162	S	2346	TTGCCTCGTGGTCCAGCCCAGTACAGCCCCTACAACTCCGGCAAGTGATC				2q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25124 (predicted) (LOC365881), mRNA.					
Rattus norvegicus	RefSeq	GI_62645691-S	ILMN_263120	RGD1306601_PREDICTED	XM_001081001.1	XM_001081001.1		311374	109470733	XM_001081001.1	RGD1306601_predicted	XP_001081001.1	ILMN_1354088	0002760368	S	1127	AGCTCAGAGGACCCCATGTTGGAGTGGGGCTCTGAAGAAGGGGGACTCCT				3q35	PREDICTED: Rattus norvegicus similar to cDNA sequence BC019755 (predicted) (RGD1306601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758029-S	ILMN_262437	CLCNKA	NM_053327.1	NM_053327.1		79425	16758029	NM_053327.1	Clcnka	NP_445779.1	ILMN_1366891	0006220504	S	2239	GCTGAACGGGACTCCGTATTCATCATGGCCTACACCGAGAGCACAACATC	5	-	160274418-160274467	5q36	Rattus norvegicus chloride channel Ka (Clcnka), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence IEP]; Any process that modulates the levels of body fluids [goid 50878] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93313	MGC93313
Rattus norvegicus	RefSeq	GI_57113808-S	ILMN_297321	V1RD15	NM_001008942.1	NM_001008942.1		292580	57113808	NM_001008942.1	V1rd15	NP_001008942.1	ILMN_1374275	0006220121	S	279	TTTCACTCGCCTGGTGGCAAGAAGCACCAACTTGTGTTCCACCTGTGTCC	1	-	67116337-67116386	1q12	Rattus norvegicus vomeronasal 1 receptor, D15 (V1rd15), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	V1rd22	V1rd22
Rattus norvegicus	RefSeq	GI_47577510-S	ILMN_297192	OLR493	NM_001000309.1	NM_001000309.1		295758	47577510	NM_001000309.1	Olr493	NP_001000309.1	ILMN_1375061	0002370520	S	536	GTGACAGTCTCCCCTTGCTGACCTTGATCTGTTCAGGCACACGTGACATT	3	-	69515870-69515919	3q24	Rattus norvegicus olfactory receptor 493 (Olr493), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr493	Olr493
Rattus norvegicus	RefSeq	GI_62644599-S	ILMN_295891	LOC685374	XM_001062165.1	XM_001062165.1		685374	109465671	XM_001062165.1	LOC685374	XP_001062165.1	ILMN_1357858	0004610270	S	912	GGGACCTGAGCTTCATCTTCAGTGGGGATGCTGCACCCTCTGAGTCTTTT	2	+	256131877-256131926	2q45	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 13c (LOC685374), mRNA.					
Rattus norvegicus	RefSeq	GI_47577096-S	ILMN_289901	OLR313	NM_001001040.1	NM_001001040.1		405926	47577096	NM_001001040.1	Olr313	NP_001001040.1	ILMN_1364665	0007000471	S	662	GCATCATTGCCACCATCCTGCGCATGCGTTCTGCTGAGGGTAAAAGGAAG	1	+	200830111-200830160	1q41	Rattus norvegicus olfactory receptor 313 (Olr313), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr313	Olr313
Rattus norvegicus	RefSeq	GI_47577820-S	ILMN_288274	OLR1217	NM_001000439.1	NM_001000439.1		300540	47577820	NM_001000439.1	Olr1217	NP_001000439.1	ILMN_1375167	0007050575	S	750	CTTCGGAGCTGCAGCATTCATGTATTTTAAGCCTCCTAATGCATCTGTGG	8	+	39672809-39672858	8q21	Rattus norvegicus olfactory receptor 1217 (Olr1217), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1217; ratchr8-39680826-39681758_ORF	Olr1217; ratchr8-39680826-39681758_ORF
Rattus norvegicus	RefSeq	GI_55741541-S	ILMN_61443	ADAD1	NM_001006977.2	NM_001006977.2		294979	62244086	NM_001006977.2	Adad1	NP_001006978.2	ILMN_1349813	0003710022	S	1565	GGGCACAAGGGGACAATTCTTTGGAGATTGTGGATGGCCTAAGTGGGAAG	2	+	123622347-123622396	2q25	Rattus norvegicus adenosine deaminase domain containing 1 (testis specific) (Adad1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]	MGC94331; MGC124895	MGC94331; MGC124895
Rattus norvegicus	RefSeq	GI_12621093-S	ILMN_289942	DNAJA1	NM_022934.1	NM_022934.1		65028	12621093	NM_022934.1	Dnaja1	NP_075223.1	ILMN_1365695	0002350215	S	1274	GAGCATCACCCCAGAGGTGGCGTTCAGTGTCAGACCTCTTAATGGGCCAG	5	+	58111369-58111410:58111411-58111418	5q22	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence ISS]; The series of events required to receive a stimulus indicating DNA damage has occurred and convert it to a molecular signal [goid 42769] [evidence IDA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]	Hsj2	Hsj2
Rattus norvegicus	RefSeq	GI_62650435-S	ILMN_272659	RGD1310845_PREDICTED	XM_001066858.1	XM_001066858.1		313928	109479027	XM_001066858.1	RGD1310845_predicted	XP_001066858.1	ILMN_1364956	0003840121	S	2295	ATTGTGGACAGTGTGGCAGTTGAGGAACAGGAGCGTGAGCGACGGCGACA				6q14	PREDICTED: Rattus norvegicus similar to KIAA0953 protein (predicted) (RGD1310845_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978484-S	ILMN_293210	ALAS2	NM_013197.1	NM_013197.1		25748	6978484	NM_013197.1	Alas2	NP_037329.1	ILMN_1367788	0001980687	S	1357	CGTGCACACCAGCGCAACGTCAAACATATGCGCCAGCTACTAATGGACAG				Xq21	Rattus norvegicus aminolevulinate, delta-, synthase 2 (Alas2), nuclear gene encoding mitochondrial protein, mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6778] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence ISS]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence ISS]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next [goid 33014] [evidence IEA]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin [goid 42541] [evidence ISS]	Catalysis of the reaction: succinyl-CoA + glycine = 5-aminolevulinate + CoA + CO2 [goid 3870] [evidence IDA]; Catalysis of the reaction: succinyl-CoA + glycine = 5-aminolevulinate + CoA + CO2 [goid 3870] [evidence ISS]; Catalysis of the reaction: succinyl-CoA + glycine = 5-aminolevulinate + CoA + CO2 [goid 3870] [evidence IDA]; Catalysis of the reaction: succinyl-CoA + glycine = 5-aminolevulinate + CoA + CO2 [goid 3870] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IDA]; Catalysis of the transfer of a nitrogenous group from one compound (donor) to another (acceptor) [goid 16769] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_12018329-S	ILMN_276016	LST1	NM_022634.1	NM_022634.1		64569	12018329	NM_022634.1	Lst1	NP_072156.1	ILMN_1356330	0002260647	S	12	GCCACCTTGTGACTGGGGAGAGGCACTCAAGACATGGGGCTGTAAGGATC	20	+	3698579-3698601:3699388-3699414	20p12	Rattus norvegicus leukocyte specific transcript 1 (Lst1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	B144	B144
Rattus norvegicus	RefSeq	GI_62659903-S	ILMN_54654	RGD1310587	XM_341168.3	XM_341168.3		360894	109498334	XM_341168.3	RGD1310587	XP_341169.3	ILMN_1369589	0000610072	S	3574	TTTCGCTTTTTCTGGTTATTCTCTTGCGTCCGGCAGCAGGGCCCACACCC	13	-	100876037-100876086	13q26	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14146 (RGD1310587), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62666276-S	ILMN_66642	MICAL1_PREDICTED	XM_215424.4	XM_215424.4		294520	109509623	XM_215424.4	Mical1_predicted	XP_215424.4	ILMN_1368658	0003940132	S	3221	TGCAGGAGCTGGACCTGGAAGAGAAGCAGCGGCAACTGGACCACGAGTTT	20	+	45448011-45448060	20q12	PREDICTED: Rattus norvegicus microtubule associated monoxygenase, calponin and LIM domain containing 1 (predicted) (Mical1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559979-S	ILMN_265480	UNC5A	NM_022206.1	NM_022206.1		60629	11559979	NM_022206.1	Unc5a	NP_071542.1	ILMN_1370320	0004150372	S	2509	GCCCAGAAACTTCACCTGGACAGCCATCTTAGCTTCTTTGCCTCCAAGCC	17	-	15670288-15670313:15670456-15670479	17p14	Rattus norvegicus unc-5 homolog A (C. elegans) (Unc5a), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A transmembrane receptor activity that responds to the netrin family of ligands and results in chemotaxis when activated [goid 5042] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Unc5h1	Unc5h1
Rattus norvegicus	RefSeq	GI_62644037-S	ILMN_274875	RGD1563598_PREDICTED	XM_001063397.1	XM_001063397.1		502585	109467243	XM_001063397.1	RGD1563598_predicted	XP_001063397.1	ILMN_1349600	0004210093	S	1152	TGGCACTCTCAGTTCAGGCTTCCTGCAAGTAAAGGCTTGGGGGATGCTGG				2q34	PREDICTED: Rattus norvegicus similar to CD160 antigen (predicted) (RGD1563598_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648810-S	ILMN_265047	BAG1_PREDICTED	XM_001059235.1	XM_001059235.1		297994	109476265	XM_001059235.1	Bag1_predicted	XP_001059235.1	ILMN_1353797	0005550315	S	1132	CAAACTTGGCCCTGCCTGAATGAAGTGTAGTAGAGAGGGGCTGTACTGGC				5q22	PREDICTED: Rattus norvegicus Bcl2-associated athanogene 1 (predicted) (Bag1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639153-S	ILMN_277116	RGD1563502_PREDICTED	XR_009116.1	XR_009116.1		292716	109461448	XR_009116.1	RGD1563502_predicted		ILMN_1372877	0005130577	S	791	TTGAACCTTTCCCCTCCATCAGTGTTCACAAGCCGAGCGCTGACCCGGAG				1q21	PREDICTED: Rattus norvegicus similar to PYM protein (predicted) (RGD1563502_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660197-S	ILMN_53674	LOC361283	XM_341568.2	XM_341568.2		361283	62660197	XM_341568.2	LOC361283	XP_341569.2	ILMN_1374161	0003170671	S	523	GGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGAGATTGC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC361283), mRNA.					
Rattus norvegicus	RefSeq	GI_62659894-S	ILMN_275497	TAF1A	NM_001037204.1	NM_001037204.1		360893	81295394	NM_001037204.1	Taf1a	NP_001032281.1	ILMN_1352224	0006510176	S	1182	CGTGAGTGGGTTGAAGAAGAGTGGAAGTCCAGGAGAAACTGGTGGCCAGC				13q26	Rattus norvegicus TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A (Taf1a), mRNA.	A transcription factor complex that acts at promoters of genes transcribed by RNA polymerase I [goid 120] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase I (Pol I), originating at a Pol I-specific promoter [goid 6360] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase I transcription [goid 3701] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC125031	MGC125031
Rattus norvegicus	RefSeq	GI_62665621-A	ILMN_296433	NCR3	NM_181822.1	NM_181822.1		294251	32452543	NM_181822.1	Ncr3	NP_861543.1	ILMN_1376381	0004210368	S	532	TCGGAACAGGAAACGGGACTCGGCTGGTGGTGGAGAAAGAGCCTCCTCAA	20	-	3702152-3702163:3702267-3702304	20p12	Rattus norvegicus natural cytotoxicity triggering receptor 3 (Ncr3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	1C7; Nkp30	1C7; Nkp30
Rattus norvegicus	RefSeq	GI_47577384-S	ILMN_263480	OLR703	NM_001000359.1	NM_001000359.1		295902	47577384	NM_001000359.1	Olr703	NP_001000359.1	ILMN_1373333	0006620270	S	689	GGAGACGTAAAGCCTTGTCCACCTGCAGCTCCCACATCACTGTGGTTGTT	3	-	73855065-73855114	3q24	Rattus norvegicus olfactory receptor 703 (Olr703), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr703	Olr703
Rattus norvegicus	RefSeq	GI_62662889	ILMN_53333	LOC497083	XM_573942.1	XM_573942.1		497083	62662889	XM_573942.1	LOC497083	XP_573942.1	ILMN_1650605	0003520008	S	2014	CCCTGTACCTATTTGGCAGCTCATAGCCACGTGTGACTTCTGTCCCGGAG				16q12.5	PREDICTED: Rattus norvegicus XK-related protein 5 (LOC497083), mRNA.					
Rattus norvegicus	RefSeq	GI_12083618-S	ILMN_277430	ZFP238	NM_022678.1	NM_022678.1		64619	12083618	NM_022678.1	Zfp238	NP_073169.1	ILMN_1369946	0004730132	S	1484	CCTTGTCGGTCAAAAGTGAAGCACTGAGCTTGCCCACTGTCAGAGACTGG	13	+	93347388-93347437	13q25	Rattus norvegicus zinc finger protein 238 (Zfp238), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rp58	Rp58
Rattus norvegicus	RefSeq	GI_34865431-S	ILMN_56304	LOC362753	XM_347076.1	XM_347076.1		362753	34865431	XM_347076.1	LOC362753	XP_347077.1	ILMN_1352170	0001940671	S	125	AAGCTCACCCAATGGAGGCATTGAGCCGCTTCTGCCGCACTCCGCAAGCT					PREDICTED: Rattus norvegicus hypothetical LOC362753 (LOC362753), mRNA.					
Rattus norvegicus	RefSeq	GI_62659907-S	ILMN_281738	RAB3GAP2	XM_001081955.1	XM_001081955.1		289350	109498336	XM_001081955.1	Rab3gap2	XP_001081955.1	ILMN_1358666	0000380600	S	4068	TCCCGCCCACACTCTGCACCTGGCTGAAGGCAATGAACCCCCAGGATCTT	13	+	101289043-101289077:101289235-101289249	13q26	PREDICTED: Rattus norvegicus RAB3 GTPase activating protein subunit 2 (Rab3gap2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IDA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Modulates the activity of an enzyme [goid 30234] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_9506774-S	ILMN_272159	HES2	NM_019236.1	NM_019236.1		29567	9506774	NM_019236.1	Hes2	NP_062109.1	ILMN_1365765	0004010139	S	329	GCCTGCGTCAGTATGTTCCACGGAAGCACCTGGGTCTTTGGATAGCTACC	5	+	169389878-169389909:169389990-169390007	5q36	Rattus norvegicus hairy and enhancer of split 2 (Drosophila) (Hes2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27676005-S	ILMN_57561	LOC502302	XM_218303.1	XM_218303.1		502302	27676005	XM_218303.1	LOC502302	XP_218303.1	ILMN_1351142	0006110722	S	142	ATGATGAGAACTGGCTCTACACACGAGCTGCTTCCACAGCACGGCACCTG				15p14	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (LOC502302), mRNA.					
Rattus norvegicus	RefSeq	GI_62661579-A	ILMN_278620	CDADC1	NM_001012156.1	NM_001012156.1		361052	58865883	NM_001012156.1	Cdadc1	NP_001012156.1	ILMN_1376534	0006660156	S	1035	GCCACAGGAAGTTGCAAGGCATTGCATGGTGCAGGCCAGGTTATTGGCTT	15	-	38675633-38675682	15p12	Rattus norvegicus cytidine and dCMP deaminase domain containing 1 (Cdadc1), mRNA.			Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649460-S	ILMN_294384	IPP_PREDICTED	XM_001071097.1	XM_001071097.1		298439	109477062	XM_001071097.1	Ipp_predicted	XP_001071097.1	ILMN_1368069	0002900121	S	1872	GTCGTTGTGAAGGGGGTGTTGCTGTATTGTGACAGCGAAGGCACAGAAGC				5q36	PREDICTED: Rattus norvegicus IAP promoted placental gene (predicted) (Ipp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662441-S	ILMN_52140	SFRS14_PREDICTED	XM_341413.2	XM_341413.2		361126	62662441	XM_341413.2	Sfrs14_predicted	XP_341414.2	ILMN_1350311	0006860270	S	2413	TGAAGCCCAAGAAGCCACCACTGCCCAGCAGATATCCCTGTCCTCAGGCA				16p14	PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 14 (predicted) (Sfrs14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647302-S	ILMN_294352	RGD1310827	NM_001034010.1	NM_001034010.1		362364	77404404	NM_001034010.1	RGD1310827	NP_001029182.1	ILMN_1369348	0001340670	S	2546	GTGGGACCGGTGGCAGCTTGAGGCGGGAGGACCACCTCTTGCAAAGATTT	4	-	82179300-82179349	4q24	Rattus norvegicus similar to RIKEN cDNA 1200009O22; EST AI316813 (RGD1310827), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650063-S	ILMN_295600	RERE	NM_053885.1	NM_053885.1		116665	16758755	NM_053885.1	Rere	NP_446337.1	ILMN_1350011	0004610093	S	6365	TGATTTCTCAGTAGGTGCTAGAGTCCGTTCACACCCTTCACTGTGCGCGC	5	+	167775183-167775232	5q36	Rattus norvegicus arginine-glutamic acid dipeptide (RE) repeats (Rere), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Arp	Arp
Rattus norvegicus	RefSeq	GI_27693405-S	ILMN_271220	RGD1561543_PREDICTED	XM_001059351.1	XM_001059351.1		295278	109467200	XM_001059351.1	RGD1561543_predicted	XP_001059351.1	ILMN_1350133	0006290021	S	72	CTGCTCCTGCTCCAAAGAAGGGCTCGAAGAAAGCTGTCACGAAAGTCCAG				2q34	PREDICTED: Rattus norvegicus similar to histone H2b-616 (predicted), transcript variant 2 (RGD1561543_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655687-S	ILMN_274142	NAGPA_PREDICTED	XM_001076706.1	XM_001076706.1		360476	109489595	XM_001076706.1	Nagpa_predicted	XP_001076706.1	ILMN_1373331	0006770195	S	1492	AGGTGAACGGGGACGCGCTGGCTGCAGAGAAGGAGCAAACAGAGGAAACT				10q12	PREDICTED: Rattus norvegicus N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (predicted) (Nagpa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16924001-S	ILMN_296371	PARK7	NM_057143.1	NM_057143.1		117287	16924001	NM_057143.1	Park7	NP_476484.1	ILMN_1370124	0005900452	S	971	GTCCACAGCCCAGTGAACCTCAGGAACTAACGTGTGAAGTAGCCCGCTGC	5	-	168050181-168050230	5q36	Rattus norvegicus Parkinson disease (autosomal recessive, early onset) 7 (Park7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]	The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 42743] [evidence ISS]; The directed movement of dopamine into a cell, typically presynaptic neurons or glial cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 51583] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence ISS]; The process in which membrane potential changes in the hyperpolarizing direction from the resting potential, usually from negative to more negative [goid 60081] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH [goid 51920] [evidence ISS]	SP22; DJ-1; CAP1; Dj1	SP22; DJ-1; CAP1; Dj1
Rattus norvegicus	RefSeq	GI_62666529-S	ILMN_58163	NYX_PREDICTED	XM_228750.4	XM_228750.4		302516	109510434	XM_228750.4	Nyx_predicted	XP_228750.4	ILMN_1368795	0001240601	S	1210	TGGTTGCGTGATTGGATGGAGGGCTCTGGGCGTGTGGCTGATGTGGCATG	X	-	21293732-21293781	Xq12	PREDICTED: Rattus norvegicus nyctalopin (predicted) (Nyx_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643630-S	ILMN_57110	RGD1563562_PREDICTED	XM_227129.4	XM_227129.4		295012	109464833	XM_227129.4	RGD1563562_predicted	XP_227129.4	ILMN_1366192	0000670253	S	8287	GCTCCTTATGCGTTTTGGGATCGGACTAGAAGGGGTTCATTGTTTGGGAG	2	-	135458261-135458310	2q26	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (predicted) (RGD1563562_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20514767-S	ILMN_279274	RIN1	NM_139038.1	NM_139038.1		207119	20514767	NM_139038.1	Rin1	NP_620607.1	ILMN_1375182	0006020193	S	2466	GGCCAGAGGAGGTCACATGCAGCTAGAGGAACAAAAGGCAGAGGGATGCC	1	+	207676067-207676116	1q43	Rattus norvegicus Ras and Rab interactor 1 (Rin1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638812-S	ILMN_274999	LOC292510	XR_007939.1	XR_007939.1		292510	109460952	XR_007939.1	LOC292510		ILMN_1372134	0006520487	S	2244	GTGTATTGGGATACTTGGGTACCCTGGCCTTTGGGAGCTTCACTCTGGCT				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (LOC292510), mRNA.					
Rattus norvegicus	RefSeq	GI_62718197-S	ILMN_270430	LOC689001	XM_001069134.1	XM_001069134.1		689001	109513290	XM_001069134.1	LOC689001	XP_001069134.1	ILMN_1353300	0003120451	S	729	GGGGGACCGCCTTTCATTATGTGTGCTAGAGGAGAAACAGCAATAGTCTG	Un|NW_047874.1	-	2195835-2195884		PREDICTED: Rattus norvegicus hypothetical protein LOC689001 (LOC689001), mRNA.					
Rattus norvegicus	RefSeq	GI_23097353-S	ILMN_284199	FADD	NM_152937.1	NM_152937.1		266610	23097353	NM_152937.1	Fadd	NP_690920.1	ILMN_1352659	0000050494	S	1405	GACTACAGTGTGCTCACAGCCCTGGGTGCTAGTCATGAATGAGGTGGTGT	1	-	205009641-205009690	1q42	Rattus norvegicus Fas (TNFRSF6)-associated via death domain (Fadd), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence IEA]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	Mort1	Mort1
Rattus norvegicus	RefSeq	GI_23618898-S	ILMN_301672	MYO7A	NM_153473.1	NM_153473.1		266714	23618898	NM_153473.1	Myo7a	NP_703203.1	ILMN_1369399	0001740593	S	6566	GGGATCAGCCTCATCGATCCCAGAACCAAGGACATCTTGACTACTCACCC	1	-	155293278-155293298:155294112-155294140	1q32	Rattus norvegicus myosin VIIA (Myo7a), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IDA]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence ISS]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence IDA]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence ISS]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A myosin complex containing a dimer of class VII myosin heavy chains and associated light chains. Myosin VII (240 kDa) is predicted to be a dimeric molecule with 5 IQ motifs and a tail region with a short stretch of coiled coil followed by two myosin-tail homology (MyTH4) domains, two talin-binding (FERM) domains and an SH3-domain [goid 31477] [evidence IDA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence IEA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome [goid 1845] [evidence IEA]; The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome [goid 1845] [evidence ISS]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 7600] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IDA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence IEA]; Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48563] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50953] [evidence ISS]; The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion [goid 50957] [evidence ISS]; The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion [goid 50957] [evidence IEA]; Any process by which a pigment granule is transported to, and/or maintained in, a specific location within the cell [goid 51875] [evidence IEA]; Any process by which a pigment granule is transported to, and/or maintained in, a specific location within the cell [goid 51875] [evidence ISS]; The directed movement of pigment granules into, out of, within or between cells [goid 51904] [evidence IEA]; The directed movement of pigment granules into, out of, within or between cells [goid 51904] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence ISS]; The process whereby relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound [goid 60113] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IDA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62661396-S	ILMN_62616	LOC498505	XM_224065.2	XM_224065.2		498505	62661396	XM_224065.2	LOC498505	XP_224065.2	ILMN_1353783	0001850397	S	44	CCGAAGGAGTAATGGAGACTCAGTGACCCAGACAGAAGGCCTGGTCAGTC					PREDICTED: Rattus norvegicus similar to T cell receptor V alpha 8.5 (LOC498505), mRNA.					
Rattus norvegicus	RefSeq	GI_62656241-S	ILMN_299276	DNAH9	XM_001078646.1	XM_001078646.1		117251	109491005	XM_001078646.1	Dnah9	XP_001078646.1	ILMN_1354966	0000070010	S	2981	CACACAGTGGCTCTCCTCACTATCAGGGTGACCTAGAGGAAATGGCTGAC				10q24	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 9 (Dnah9), mRNA.	Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643143-S	ILMN_273097	CAR1_PREDICTED	XM_001053327.1	XM_001053327.1		310218	109466290	XM_001053327.1	Car1_predicted	XP_001053327.1	ILMN_1373320	0000360022	S	719	TCCGTGGTCTTCTGTCAAGTGCCGAGGGAGAGCCTGCGGTTCCAGTTCTG				2q23	PREDICTED: Rattus norvegicus carbonic anhydrase 1 (predicted) (Car1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262187-S	ILMN_279782	TAC4	NM_172328.2	NM_172328.2		282829	54262187	NM_172328.2	Tac4	NP_758831.1	ILMN_1355669	0006840707	S	926	GGCACCTTCTTCCCTTTAGGTTCCTGATATGGCTCCGTGGGCTAAGGCAG	10	+	83954318-83954367	10q31	Rattus norvegicus tachykinin 4 (Tac4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor [goid 7217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a mast cell [goid 43303] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of saliva [goid 46878] [evidence ISS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]	Ppt-c	Ppt-c
Rattus norvegicus	RefSeq	GI_62645629-S	ILMN_68113	MAPKBP1_PREDICTED	XM_342498.3	XM_342498.3		362197	109468684	XM_342498.3	Mapkbp1_predicted	XP_342499.2	ILMN_1366056	0000870397	S	4409	GAGGAATGTACGCCAGGCAGTGCAGCTCTACCACTCGGTGACCAGCTGTA	3	+	106530067-106530103:106530630-106530642	3q35	PREDICTED: Rattus norvegicus mitogen activated protein kinase binding protein 1 (predicted) (Mapkbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393052-S	ILMN_276094	CASR	NM_016996.1	NM_016996.1		24247	8393052	NM_016996.1	Casr	NP_058692.1	ILMN_2040553	0005560598	S	3634	GATGCGGACTCAGAAATGACCATTCAGGAAACGGGCCTGCAAGGGCCCAT	11	-	66084597-66084646	11q22	Rattus norvegicus calcium-sensing receptor (Casr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IMP]; The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal [goid 5513] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; Any process that activates or increases the rate of ATP hydrolysis by an ATPase [goid 32781] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_16758501-S	ILMN_294199	HCN3	NM_053685.1	NM_053685.1		114245	16758501	NM_053685.1	Hcn3	NP_446137.1	ILMN_1350589	0001580253	S	2278	CCATCCAGGTCATCAGTGCCTGAGCCAGTTACCCCCAGAGGTCCCCAAAT	2	-	181224337-181224386	2q34	Rattus norvegicus hyperpolarization-activated cyclic nucleotide-gated potassium channel 3 (Hcn3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638783-S	ILMN_269989	RGD1566044_PREDICTED	XM_001058175.1	XM_001058175.1		292413	109460898	XM_001058175.1	RGD1566044_predicted	XP_001058175.1	ILMN_1352104	0006660180	S	694	GCCCTTGTTAATTCTAGCCGTGCTTCACGAGTCCTAAAGGCAGTTGTGGC				1q12	PREDICTED: Rattus norvegicus similar to N-formylpeptide receptor-like 2 (predicted) (RGD1566044_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741626-S	ILMN_281784	CHDH	NM_198731.2	NM_198731.2		290551	55741626	NM_198731.2	Chdh	NP_942026.1	ILMN_1370073	0002510592	S	3273	GGCTCTCCTATCCCAGGATTGACTGGTATGTGCTGCCTCCTGGACGTTTG	16	+	5380664-5380713	16p16	Rattus norvegicus choline dehydrogenase (Chdh), mRNA.	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IMP]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom, as carried out by individual cells [goid 6066] [evidence IEA]	Catalysis of the reaction: choline + acceptor = betaine aldehyde + reduced acceptor [goid 8812] [evidence IMP]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	MGC93763	MGC93763
Rattus norvegicus	RefSeq	GI_47576580-S	ILMN_293141	OLR1658	NM_001000105.1	NM_001000105.1		291161	47576580	NM_001000105.1	Olr1658	NP_001000105.1	ILMN_1373209	0005290364	S	494	CGAGATGCGGCAGATGCCAGGTGAGGCACTTCCTGTGTGAGATGCCAGCT	17	+	50603044-50603093	17q11	Rattus norvegicus olfactory receptor 1658 (Olr1658), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr17-50605392-50606312_ORF; Olr1658	ratchr17-50605392-50606312_ORF; Olr1658
Rattus norvegicus	RefSeq	GI_62649123-S	ILMN_58584	LOC500480	XM_575847.1	XM_575847.1		500480	62649123	XM_575847.1	LOC500480	XP_575847.1	ILMN_1351939	0001980471	S	891	CCTGGACAGATGTCATACGGAACCTAAGAGAACACAAATGCCAGCCCAGG					PREDICTED: Rattus norvegicus similar to ORF1 (LOC500480), mRNA.					
Rattus norvegicus	RefSeq	GI_62652289-S	ILMN_272361	ZBTB39_PREDICTED	XM_001056869.1	XM_001056869.1		299510	109482095	XM_001056869.1	Zbtb39_predicted	XP_001056869.1	ILMN_1361835	0002320072	S	1848	CTCTGCAGGGCCAACCAGGGAATAGTAAGTACAGCTGCAAGGTCTGTGGC				7q22	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 39 (predicted) (Zbtb39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649191-S	ILMN_263950	RGD1311849_PREDICTED	XM_001053590.1	XM_001053590.1		313346	109476713	XM_001053590.1	RGD1311849_predicted	XP_001053590.1	ILMN_1371378	0003290270	S	5347	CTCCCAGAGTTTAAGAAGAAAGCTGTATGGACCCGAGCGTATGGCTGGTG				5q32	PREDICTED: Rattus norvegicus similar to mKIAA1797 protein (predicted) (RGD1311849_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665124-S	ILMN_299801	RGD1559432_PREDICTED	XM_001074860.1	XM_001074860.1		498937	109508743	XM_001074860.1	RGD1559432_predicted	XP_001074860.1	ILMN_1360556	0005080195	S	3714	GAACTTTGTAGAAATGATCCAGAAGCTAAGGGCCTGTGTTGGCAGTGGCC					PREDICTED: Rattus norvegicus RGD1559432 (predicted) (RGD1559432_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663492-S	ILMN_58156	LOC498742	XM_574020.1	XM_574020.1		498742	62663492	XM_574020.1	LOC498742	XP_574020.1	ILMN_1350360	0004780632	S	513	TCTGGGTGAGTATCTTGACTGGAGGGGGGAGTGTTTGACTGATGACCTTG					PREDICTED: Rattus norvegicus similar to O-acyltransferase (membrane bound) domain containing 1 (LOC498742), mRNA.					
Rattus norvegicus	RefSeq	GI_62643428-S	ILMN_70102	LOC499612	XM_574939.1	XM_574939.1		499612	62643428	XM_574939.1	LOC499612	XP_574939.1	ILMN_1366459	0003190100	S	662	AGAGGTGAGGGATGGGGTTGGTCATTTACTTGCAGTGTCGGGCTTCTGAG					PREDICTED: Rattus norvegicus similar to NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 (LOC499612), mRNA.					
Rattus norvegicus	RefSeq	GI_62660454-S	ILMN_48891	HIP2_PREDICTED	XM_214043.3	XM_214043.3		289623	62660454	XM_214043.3	Hip2_predicted	XP_214043.1	ILMN_1370917	0006980168	S	1760	GTGGTGTCTCGCTGTACATACCAGATGCACATAGGAACAGGGGTGTGCTC				14p11	PREDICTED: Rattus norvegicus huntingtin interacting protein 2 (predicted) (Hip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660351-S	ILMN_64300	LOC501906	XM_577330.1	XM_577330.1		501906	62660351	XM_577330.1	LOC501906	XP_577330.1	ILMN_1359751	0002650736	S	459	GCTACAGCTGTTACCTCCCCAACTGGTGCACACGAGAGTACTCCAAATGC					PREDICTED: Rattus norvegicus similar to SPAPB15E9.01c (LOC501906), mRNA.					
Rattus norvegicus	RefSeq	GI_62666166-S	ILMN_61382	LOC502433	XM_580247.1	XM_580247.1		502433	62666166	XM_580247.1	LOC502433	XP_580247.1	ILMN_1357644	0001240154	S	138	GTGCAGGATATGGCATTGGAGGTCTCTGTAGCAGGGATCATGAGGCAGCC					PREDICTED: Rattus norvegicus LOC502433 (LOC502433), mRNA.					
Rattus norvegicus	RefSeq	GI_47577992-S	ILMN_288590	OLR1084	NM_001000709.1	NM_001000709.1		404958	47577992	NM_001000709.1	Olr1084	NP_001000709.1	ILMN_1357046	0003190711	S	815	CTGCAAGAGTTTCAGTCATGTATACTGTGATCATCCCCATGCTGAACCCC	7	+	12276911-12276960	7q11	Rattus norvegicus olfactory receptor 1084 (Olr1084), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1084	Olr1084
Rattus norvegicus	RefSeq	GI_31341077-S	ILMN_295925	RTN4RL1	NM_181377.2	NM_181377.2		303311	31341077	NM_181377.2	Rtn4rl1	NP_852042.1	ILMN_1373165	0006980010	S	1216	GCCCCCGACTATCAGCACAAGTTCAGCTTTGACATCATGCCCACTGCACG	10	+	62574767-62574816	10q24	Rattus norvegicus reticulon 4 receptor-like 1 (Rtn4rl1), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence IDA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence ISS]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence IEA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence ISS]	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ngrh2	Ngrh2
Rattus norvegicus	RefSeq	GI_62643388-S	ILMN_68276	RGD1565989_PREDICTED	XM_574929.2	XM_574929.2		499603	109464803	XM_574929.2	RGD1565989_predicted	XP_574929.1	ILMN_1350407	0002320044	S	854	TGCAGTCCCAACAAGGATGCGCAGGAGAAAGGCACAGGAGCCCAGTGACA	2	+	127985786-127985835	2q26	PREDICTED: Rattus norvegicus similar to FLJ10378 protein (predicted) (RGD1565989_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21245093-S	ILMN_275555	MAN2C1	NM_139256.1	NM_139256.1		246136	21245093	NM_139256.1	Man2c1	NP_640349.1	ILMN_1357252	0002370497	S	3010	CAGCAGTCGTGTTGGAGACCATCAAGCAGGCCGAGAAGAGCCATCAGCAC	8	+	60898260-60898309	8q24	Rattus norvegicus mannosidase, alpha, class 2C, member 1 (Man2c1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence NAS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins [goid 6013] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides [goid 4559] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93158	MGC93158
Rattus norvegicus	RefSeq	GI_57012367-S	ILMN_283274	KRT77	NM_001008807.1	NM_001008807.1		406226	57012367	NM_001008807.1	Krt77	NP_001008807.1	ILMN_1356842	0006020025	S	1265	GAGCTCTCCAGGACGCCAAGCAGAAGCTGCAAGAAACGGAAGAGGCCTTG	7	-	140556345-140556394	7q36	Rattus norvegicus keratin 77 (Krt77), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657432-S	ILMN_63393	UBE2O_PREDICTED	XM_221132.4	XM_221132.4		303689	109489412	XM_221132.4	Ube2o_predicted	XP_221132.4	ILMN_1355345	0006770463	S	3606	AGACTCTGGCCGAGAAGAGCCTGAGGATGTTGGGATGACCCCTGGGGAAG	10	-	106648642-106648691	10q32.3	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2O (predicted) (Ube2o_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.137727	ILMN_63393	UBE2O_PREDICTED	XM_221132.4	XM_221132.4		303689	109489412	XM_221132.4	Ube2o_predicted	XP_221132.4	ILMN_1530448	0001780592	S	1619	TATCCATCAAAAACTTGAAGCGAAAACACAAGAGGAAGAAGAATAAGATT	10	-	106653746-106653795	10q32.3	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2O (predicted) (Ube2o_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254753-S	ILMN_302052	OCLN	NM_031329.2	NM_031329.2		83497	40254753	NM_031329.2	Ocln	NP_112619.2	ILMN_1360561	0006770162	S	3685	TGGTGCTACCTCTGTGGGCCTGAAGCCAGTATCAGGGTGTGCCCATTGGT	2	-	31317508-31317557	2q12	Rattus norvegicus occludin (Ocln), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence NAS]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence IDA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + a thiopurine = S-adenosyl-L-homocysteine + a thiopurine S-methylether [goid 8119] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + a thiopurine = S-adenosyl-L-homocysteine + a thiopurine S-methylether [goid 8119] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Ocln	Ocln
Rattus norvegicus	RefSeq	GI_34881605-S	ILMN_59845	LOC367927	XM_346354.1	XM_346354.1		367927	34881605	XM_346354.1	LOC367927	XP_346355.1	ILMN_1349893	0002360068	S	189	GCCAAGAGCGACAAAGATCGGTACCAACTGAACATATCCAGGACTCAAGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC367927), mRNA.					
Rattus norvegicus	RefSeq	GI_9506390-S	ILMN_287731	APOM	NM_019373.1	NM_019373.1		55939	9506390	NM_019373.1	Apom	NP_062246.1	ILMN_1365037	0002630706	S	450	GAGGAATCATGCTGAAAGAGACGGGGCAGGGGTACCAGCGTTTCCTCCTC	20	+	3755910-3755959	20p12	Rattus norvegicus apolipoprotein M (Apom), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence IEA]; The directed movement of periperal cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism [goid 43691] [evidence ISS]	Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27731542-S	ILMN_270449	TBC1D17_PREDICTED	XM_001077952.1	XM_001077952.1		292886	109461860	XM_001077952.1	Tbc1d17_predicted	XP_001077952.1	ILMN_1360484	0003360543	S	2571	AAGGGCCTGGGCATGTACACAGGAAACACGGGCATGTGGGATCTGGCACT				1q22	PREDICTED: Rattus norvegicus TBC1 domain family, member 17 (predicted) (Tbc1d17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639677-S	ILMN_270449	TBC1D17_PREDICTED	XM_001077952.1	XM_001077952.1		292886	109461860	XM_001077952.1	Tbc1d17_predicted	XP_001077952.1	ILMN_1349144	0006620180	S	2214	GGCTGGCCTTGAGGCTGCTGGTTGTTTTTAGTCAGGATCTGTCAGCACCC				1q22	PREDICTED: Rattus norvegicus TBC1 domain family, member 17 (predicted) (Tbc1d17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644989-S	ILMN_59099	LOC502616	XM_578107.1	XM_578107.1		502616	62644989	XM_578107.1	LOC502616	XP_578107.1	ILMN_1358583	0002370576	S	1014	TTCTGTGACCCAGCTGCTACTTCCCGGAAACAATTCTGTGACCCAGCTGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA D830019K17 (LOC502616), mRNA.					
Rattus norvegicus	RefSeq	GI_62648965-S	ILMN_50186	LOC313233	XM_232988.3	XM_232988.3		313233	62648965	XM_232988.3	LOC313233	XP_232988.3	ILMN_1356254	0001780021	S	1580	TGCAGCTTTCTGTACGACTGCGGAAGCCAGGTTTACTCTTAGCCTGCTCC				5q22	PREDICTED: Rattus norvegicus similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (LOC313233), mRNA.					
Rattus norvegicus	RefSeq	GI_62650663-S	ILMN_48201	COCH_PREDICTED	XM_343058.3	XM_343058.3		362735	109478200	XM_343058.3	Coch_predicted	XP_343059.3	ILMN_1351350	0000580102	S	2877	GACGCTTAGACACAACGCACTGTTCCTTCTTTAATCACTCTGCATTGACC	6	+	71705878-71705927	6q22	PREDICTED: Rattus norvegicus coagulation factor C homolog (Limulus polyphemus) (predicted) (Coch_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653860	ILMN_51077	LOC501016	XM_576427.1	XM_576427.1		501016	62653860	XM_576427.1	LOC501016	XP_576427.1	ILMN_1649887	0006660040	S	1	ACCAGGAGCTACAAAGGCTTTGTCCAAGGATCCTAAACTACTTTGCAGTC					PREDICTED: Rattus norvegicus similar to A-kinase anchor protein-like protein 8 (Neighbor of A-kinase anchoring protein 95) (LOC501016), mRNA.					
Rattus norvegicus	RefSeq	GI_62638929-S	ILMN_276625	UBE2M_PREDICTED	XM_001062179.1	XM_001062179.1		361509	109460969	XM_001062179.1	Ube2m_predicted	XP_001062179.1	ILMN_1355990	0005270239	S	833	CCATGAGAGGTGGTTACATCGGGTCCACCTACTTCGAGCGCTGCCTGAAA				1q21	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) (predicted) (Ube2m_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540680-S	ILMN_282679	MDK	NM_030859.1	NM_030859.1		81517	13540680	NM_030859.1	Mdk	NP_110486.1	ILMN_1356875	0006220070	S	546	CCTCCTCTCCCACAGGCCCAAGATGTAACCCACCAGTGCCTTTTGTCTTC	3	-	76309894-76309943	3q24	Rattus norvegicus midkine (Mdk), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Progression through M phase, the part of the mitotic cell cycle during which mitosis takes place [goid 87] [evidence IEP]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657473-S	ILMN_267870	ACTG1	XM_001076100.1	XM_001076100.1		287876	109489497	XM_001076100.1	Actg1	XP_001076100.1	ILMN_1364152	0006510035	S	558	GAGCCTGTATGGGAAGCTCCTGGGGGCGTGCGGGGCGCAGAATTCACAGA	10	-	109777288-109777337	10q32.3	PREDICTED: Rattus norvegicus actin, gamma, cytoplasmic 1 (Actg1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]	The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 45214] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62647210-S	ILMN_279109	RGD1559747_PREDICTED	XM_001054410.1	XM_001054410.1		312310	109473457	XM_001054410.1	RGD1559747_predicted	XP_001054410.1	ILMN_1348847	0000050193	S	563	ATGGCCACGGGCCTGAGAGTCAAGCGGCCCATTTGAGCAGTGTGCTATGA				4q24	PREDICTED: Rattus norvegicus similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29) (predicted) (RGD1559747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665840-S	ILMN_68490	RGD1308722_PREDICTED	XM_342116.3	XM_342116.3		361822	109509331	XM_342116.3	RGD1308722_predicted	XP_342117.2	ILMN_1368016	0005420609	S	1203	CATGCGTGGGGAAGTCAGACAGCTGGCGGGAGATGGCTCTCTGCTATGAT	20	+	12587137-12587186	20p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A130042E20; open reading frame 57 (predicted) (RGD1308722_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653567-A	ILMN_268447	C1QTNF5	NM_001012123.1	NM_001012123.1		315598	58865815	NM_001012123.1	C1qtnf5	NP_001012123.1	ILMN_1376952	0006900402	S	945	CTCCCCAGTCTTCGCTTAAAATACAGTGAACCCGGAGCTGGCACTTGCTC	8	+	47091044-47091062:47091063-47091093	8q22	Rattus norvegicus C1q and tumor necrosis factor related protein 5 (C1qtnf5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			MGC109436	MGC109436
Rattus norvegicus	RefSeq	GI_62664792-S	ILMN_62001	LOC498908	XM_574197.1	XM_574197.1		498908	62664792	XM_574197.1	LOC498908	XP_574197.1	ILMN_1368649	0002850619	S	216	GGAGAGGATGTGTAAAAAGACAAACACTCCTCCATTGCTGGTGAGATTGC					PREDICTED: Rattus norvegicus similar to LRRG00124 (LOC498908), mRNA.					
Rattus norvegicus	RefSeq	GI_57164010-S	ILMN_267072	V1RB9	NM_173297.2	NM_173297.2		286956	57164010	NM_173297.2	V1rb9	NP_775419.2	ILMN_1349783	0004150161	S	576	GGAAGCCCTTCTTATTGGTCTCATTGGCCTGTCCAGTGGGTACATGGTTG	4	+	124042871-124042920	4q34	Rattus norvegicus vomeronasal 1 receptor, B9 (V1rb9), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	Vnr5; V1rb12; Vn5	Vnr5; V1rb12; Vn5
Rattus norvegicus	RefSeq	GI_31542121-S	ILMN_263196	ALDH1A1	NM_022407.3	NM_022407.3		24188	31542121	NM_022407.3	Aldh1a1	NP_071852.2	ILMN_1367475	0002340079	S	1827	GGTGAGGAGGACCAGTCGTGATTTAAGCTCTGTCCCTCTGTGACCCCTTG	1	+	223773024-223773073	1q51	Rattus norvegicus aldehyde dehydrogenase 1 family, member A1 (Aldh1a1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The invagination of the optic vesicle to form two-walled indentations, the optic cups, that will go on to form the retina. This process begins with the optic vesicle becoming a two-walled structure and its subsequent shape changes. It does not include the fate commitment of cells to become the pigmented retina and the neural retina [goid 2072] [evidence ISS]; The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A [goid 42572] [evidence ISS]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. Morphogenesis pertains to the creation of form [goid 48048] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal [goid 1758] [evidence IEA]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence TAS]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence ISS]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	AHD2; Aldh2; Aldh1	AHD2; Aldh2; Aldh1
Rattus norvegicus	RefSeq	GI_62650592-S	ILMN_67411	TWISTNB_PREDICTED	XM_343050.3	XM_343050.3		362728	109478128	XM_343050.3	Twistnb_predicted	XP_343051.3	ILMN_1360999	0006110575	S	907	GCACCAGGAAGATCAGGACCCCATTTTCCAAGCCAGTGACTCCAGTGGCT	6	+	51804477-51804526	6q16	PREDICTED: Rattus norvegicus TWIST neighbor (predicted) (Twistnb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_67846089	ILMN_263242	MGC114499	NM_001024907.1	NM_001024907.1		499135	67846089	NM_001024907.1	MGC114499	NP_001020078.1	ILMN_1530493	0006380746	S	1279	AAGACCAAATGGACAAGAGAAAATAATTCCAAGAAAACAGAAGAACCTAA	1	+	92522908-92522957	1q22	Rattus norvegicus similar to RIKEN cDNA 4930433I11 gene (MGC114499), mRNA.					
Rattus norvegicus	RefSeq	GI_62639571-S	ILMN_263242	MGC114499	NM_001024907.1	NM_001024907.1		499135	67846089	NM_001024907.1	MGC114499	NP_001020078.1	ILMN_1355849	0002680373	S	2154	GGGACCAGTAGTCTCACAGCCCATCACAAAAGAGCAGAGGCCAGAGAGGG	1	+	92523783-92523832	1q22	Rattus norvegicus similar to RIKEN cDNA 4930433I11 gene (MGC114499), mRNA.					
Rattus norvegicus	RefSeq	GI_62661244-S	ILMN_69360	RGD1563070_PREDICTED	XM_223927.4	XM_223927.4		305812	109501513	XM_223927.4	RGD1563070_predicted	XP_223927.4	ILMN_1353095	0001740373	S	931	GCGTCCTGACCTCCGCCCAGCGAGACGTGAAGTTTGCAGGAGAAGAGATT	15	+	21164444-21164493	15p14	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1563070_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62414252-S	ILMN_275441	PCDHB7	XM_001055294.1	XM_001055294.1		291652	109506471	XM_001055294.1	Pcdhb7	XP_001055294.1	ILMN_1349096	0003360131	S	2234	CGCCTGACCCCGCACAGAAAGTCGAGGATGCGCTCACTGTGTACCTGATT	18	+	30161579-30161628	18p11	PREDICTED: Rattus norvegicus protocadherin beta 7 (Pcdhb7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658420-A	ILMN_49370	MIST1	XM_579353.1	XM_579353.1		25334	62658420	XM_579353.1	Mist1	XP_579353.1	ILMN_1376408	0001740273	S	3209	CCCTGGAGAGACTTGTCCTAAGCCTCCAGATCTCACCGACTTCACATGGG				12p11	PREDICTED: Rattus norvegicus muscle, intestine and stomach expression 1 (Mist1), mRNA.					
Rattus norvegicus	RefSeq	GI_55741511-S	ILMN_263561	RNASEH2B	NM_001007007.1	NM_001007007.1		361056	55741511	NM_001007007.1	Rnaseh2b	NP_001007008.1	ILMN_1351331	0001780025	S	1111	GTGGGAAAGTGATTGTGCGAGCTTCTGTCCAGGGCCTTTGGAACGTTTGC	15	+	41597327-41597376	15p12	Rattus norvegicus ribonuclease H2, subunit B (Rnaseh2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_27465554-S	ILMN_276351	VNR1	NM_173113.1	NM_173113.1		286893	27465554	NM_173113.1	Vnr1	NP_775136.1	ILMN_1360751	0005690408	S	834	CTGCTGGCCATCAGGGATGTCTTTCTTATTAGTCTCATGGTCCTGTCAAC	4	-	124818667-124818716	4q34	Rattus norvegicus vomeronasal receptor 1 (Vnr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	Vn1	Vn1
Rattus norvegicus	RefSeq	GI_8393220-S	ILMN_290679	CTSS	NM_017320.1	NM_017320.1		50654	8393220	NM_017320.1	Ctss	NP_059016.1	ILMN_1352236	0005900717	S	1168	CCTCTCTCTGAAAAGTCTGTAAGCAAGGACGCGCTGAGGATGGAGCTGGC	2	+	190466863-190466877	2q34	Rattus norvegicus cathepsin S (Ctss), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34876395	ILMN_48496	HIST1H2AI_PREDICTED	XM_225393.2	XM_225393.2		291159	34876395	XM_225393.2	Hist1h2ai_predicted	XP_225393.2	ILMN_1651165	0004850086	S	397	GACCAATCAGAATCCAGCCGCCTGTATAAATGTGGCCGTGAAGCTTTTTC				17p11	PREDICTED: Rattus norvegicus histone 1, H2ai (predicted) (Hist1h2ai_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654480-S	ILMN_59031	SLC22A13_PREDICTED	XM_236685.4	XM_236685.4		316062	109484065	XM_236685.4	Slc22a13_predicted	XP_236685.4	ILMN_1366673	0000380181	S	1641	CTCAGGAAGAACGTCCAGTGCCAGGGTGGCCGTTGTGAGAAGCTCCTACT	8	-	124159597-124159646	8q32	PREDICTED: Rattus norvegicus solute carrier family 22 (organic cation transporter), member 13 (predicted) (Slc22a13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476090-S	ILMN_294124	H1F0	NM_012578.2	NM_012578.2		24437	42476090	NM_012578.2	H1f0	NP_036710.1	ILMN_1352242	0001090500	S	1539	GAGTCTTTTCTAAGTAGCCGAGGAGGGGGAGAGGCAGGGAGTGGACTGTG	7	+	117002872-117002921	7q34	Rattus norvegicus H1 histone family, member 0 (H1f0), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	H1fv	H1fv
Rattus norvegicus	RefSeq	GI_31341231-S	ILMN_302137	GLDN	NM_181382.2	NM_181382.2		315675	31341231	NM_181382.2	Gldn	NP_852047.1	ILMN_1373820	0006900215	S	1963	GCATGTGGCAAGTCCCCCTGTAAGCCAGGTTAGCTAGAGGCTGGAAGTTG	8	+	57838852-57838901	8q24	Rattus norvegicus gliomedin (Gldn), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		Crgl2; Colm	Crgl2; Colm
Rattus norvegicus	RefSeq	GI_62651360-S	ILMN_59629	LOC500740	XM_576120.1	XM_576120.1		500740	62651360	XM_576120.1	LOC500740	XP_576120.1	ILMN_1367224	0002970021	S	508	AAGGGCTGGAGTGGATGGGAGGGGTATGGATTGGTGGAAACACAGAGTAT					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC500740), mRNA.					
Rattus norvegicus	RefSeq	GI_62717910-S	ILMN_54989	LOC501254	XM_576673.1	XM_576673.1		501254	62717910	XM_576673.1	LOC501254	XP_576673.1	ILMN_1372627	0004810484	S	139	GGGTCAAACAGATCCCTAGAATCTTCTGTGATGTCACCAGTGTTGTGGTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC501254), mRNA.					
Rattus norvegicus	RefSeq	GI_27697899-S	ILMN_62346	LOC289836	XM_223678.1	XM_223678.1		289836	27697899	XM_223678.1	LOC289836	XP_223678.1	ILMN_1356420	0002360102	S	306	GTCTTTGCTGGTGACTCCTTCTGCTGTGATGGGTTCCTAAGGGGAGGACC					PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (LOC289836), mRNA.					
Rattus norvegicus	RefSeq	GI_62662225-S	ILMN_288007	ARHGAP22_PREDICTED	XM_001056636.1	XM_001056636.1		306279	109503712	XM_001056636.1	Arhgap22_predicted	XP_001056636.1	ILMN_1353116	0001690278	S	1746	CAGAGCCCCAGAGTGAAAGGAGCGGAAGCGCATGTCCACCTATGTCCACT				16p16	PREDICTED: Rattus norvegicus Rho GTPase activating protein 22 (predicted) (Arhgap22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662870-S	ILMN_280159	THSD1_PREDICTED	XM_001064856.1	XM_001064856.1		364630	109504337	XM_001064856.1	Thsd1_predicted	XP_001064856.1	ILMN_1361537	0000510176	S	2341	AGGTCGGGCCAGCAGTCCTTTGGGTCCACTCTCCAAATCCTACACTGTGG				16q12.5	PREDICTED: Rattus norvegicus thrombospondin, type I, domain 1 (predicted) (Thsd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646459-S	ILMN_284891	TMEPAI_PREDICTED	XM_001054581.1	XM_001054581.1		311676	109471426	XM_001054581.1	Tmepai_predicted	XP_001054581.1	ILMN_1364908	0005340053	S	944	CAGGGGACACACAGGCTGTAAGGCGTGTGCTAGTTCTCCGGTCTGTGTAT				3q42	PREDICTED: Rattus norvegicus transmembrane, prostate androgen induced RNA (predicted) (Tmepai_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658016-S	ILMN_302282	LRRC33	NM_001024995.1	NM_001024995.1		303875	68163430	NM_001024995.1	Lrrc33	NP_001020166.1	ILMN_1371215	0000520537	S	2060	CAGAGGGCATACCTCAGGACTGTAAGTGGGGGCAGGTGGACACTGGTCTA	11	+	70465990-70466039	11q22	Rattus norvegicus leucine rich repeat containing 33 (Lrrc33), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Garpl1; MGC108848; RGD1310771	Garpl1; MGC108848; RGD1310771
Rattus norvegicus	RefSeq	GI_62665470-S	ILMN_50306	LOC502203	XM_577663.1	XM_577663.1		502203	62665470	XM_577663.1	LOC502203	XP_577663.1	ILMN_1369794	0006620095	S	1081	AGCTCCCTGGGTTCTGTTTGCAGAGCGTGGAGCTGTCCGCAGTGCTGATT					PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (LOC502203), mRNA.					
Rattus norvegicus	RefSeq	GI_62640398-S	ILMN_70356	LOC365271	XM_574464.1	XM_574464.1		365271	62640398	XM_574464.1	LOC365271	XP_574464.1	ILMN_1372698	0001450411	S	1418	GGCACCCCAGAAGAGAGCTGAGGGGAGAGAATTCAGCCATAAGACATTTG					PREDICTED: Rattus norvegicus similar to HBxAg transactivated protein 2 (LOC365271), mRNA.					
Rattus norvegicus	RefSeq	GI_62656157-S	ILMN_51367	NT5M_PREDICTED	XM_213318.4	XM_213318.4		287368	109488209	XM_213318.4	Nt5m_predicted	XP_213318.2	ILMN_1363628	0004610364	S	1046	AGGACCTGCAAGGCGTGGAGTGCCAGGGATAGATGACAGAGGTTCCCTCG	10	+	46201107-46201156	10q22	PREDICTED: Rattus norvegicus 5',3'-nucleotidase, mitochondrial (predicted) (Nt5m_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31543032-S	ILMN_295721	TH	NM_012740.2	NM_012740.2		25085	31543032	NM_012740.2	Th	NP_036872.1	ILMN_1360569	0001770619	S	1711	TGCCTCTCGTATCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACAC	1	-	203164270-203164319	1q41	Rattus norvegicus tyrosine hydroxylase (Th), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence ISS]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine (3,4-dihydroxyphenylethylamine) from L-tyrosine, via the metabolic precursor 3,4-dihydroxy-L-phenylalanine (L-dopa). Dopamine is a catecholamine neurotransmitter and a metabolic precursor of norepinephrine and epinephrine [goid 6585] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dopamine (3,4-dihydroxyphenylethylamine) from L-tyrosine, via the metabolic precursor 3,4-dihydroxy-L-phenylalanine (L-dopa). Dopamine is a catecholamine neurotransmitter and a metabolic precursor of norepinephrine and epinephrine [goid 6585] [evidence ISS]; The chemical reactions and pathways resulting in the formation of dopamine (3,4-dihydroxyphenylethylamine) from L-tyrosine, via the metabolic precursor 3,4-dihydroxy-L-phenylalanine (L-dopa). Dopamine is a catecholamine neurotransmitter and a metabolic precursor of norepinephrine and epinephrine [goid 6585] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence ISS]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan) [goid 9072] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 42423] [evidence TAS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: L-tyrosine + tetrahydrobiopterin + O2 = 3,4-dihydroxy-L-phenylalanine + 4-alpha-hydroxytetrahydrobiopterin + H2O [goid 4511] [evidence TAS]; Catalysis of the reaction: L-tyrosine + tetrahydrobiopterin + O2 = 3,4-dihydroxy-L-phenylalanine + 4-alpha-hydroxytetrahydrobiopterin + H2O [goid 4511] [evidence ISS]; Catalysis of the reaction: L-tyrosine + tetrahydrobiopterin + O2 = 3,4-dihydroxy-L-phenylalanine + 4-alpha-hydroxytetrahydrobiopterin + H2O [goid 4511] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ferrous iron, Fe(II) [goid 8198] [evidence IDA]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Interacting selectively with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine [goid 35240] [evidence IPI]	The	The
Rattus norvegicus	RefSeq	GI_62665275-S	ILMN_271019	LOC292017	XM_001077360.1	XM_001077360.1		292017	109508885	XM_001077360.1	LOC292017	XP_001077360.1	ILMN_1362455	0000870242	S	15228	CCCGTCAGGCAGTAAAACCCCTATCACCACTAAGCTGATTGTCACCTGCC				19q12	PREDICTED: Rattus norvegicus hydrocephalus-inducing protein (LOC292017), mRNA.					
Rattus norvegicus	RefSeq	GI_62645613-S	ILMN_67397	RGD1310969_PREDICTED	XM_230473.4	XM_230473.4		296084	109468671	XM_230473.4	RGD1310969_predicted	XP_230473.4	ILMN_1366527	0000610500	S	3957	TTCAGGAAGCACAGCCAAAGGAGCGGGGAAAGGCCGAAGCCGCAAGTCCA	3	-	105902526-105902575	3q35	PREDICTED: Rattus norvegicus similar to KIAA1259 protein (predicted) (RGD1310969_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648606-S	ILMN_54714	LOC500402	XM_575765.1	XM_575765.1		500402	62648606	XM_575765.1	LOC500402	XP_575765.1	ILMN_1362317	0002120047	S	57	CACACCATGCCTATGCCTGTGGGACAGAACGAAGTTAAAGCCCCAGTCAC				5q13	PREDICTED: Rattus norvegicus similar to suppressor of initiator codon mutations, related sequence 1 (LOC500402), mRNA.					
Rattus norvegicus	RefSeq	GI_62650218-S	ILMN_48380	LOC362682	XM_342997.2	XM_342997.2		362682	62650218	XM_342997.2	LOC362682	XP_342998.2	ILMN_1368501	0003520725	S	435	GCCGGAGACCAGATTCTTCAGGTAAGAGCTCCACTATACCTTAGACAGAC					PREDICTED: Rattus norvegicus similar to LNX2 (LOC362682), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641229-S	ILMN_267270	CDR2	NM_001025682.1	NM_001025682.1		308958	71043859	NM_001025682.1	Cdr2	NP_001020853.1	ILMN_1368793	0000780369	S	1583	GATAATGTTGAGTCCGAGGTCCTAGGAAATCTCGATAGACTGGCCTCTGG	1	-	179805065-179805114	1q35-q36	Rattus norvegicus cerebellar degeneration-related 2 (Cdr2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1310578; MGC116181	RGD1310578; MGC116181
Rattus norvegicus	RefSeq	GI_62660953-S	ILMN_66534	RGD1562229_PREDICTED	XM_573682.2	XM_573682.2		498431	109500144	XM_573682.2	RGD1562229_predicted	XP_573682.2	ILMN_1363906	0005890180	S	511	CCAGGAGAACTCCCAATGAGCCCATCCGGGGAAAGAGACACGGAACCTTC	14	+	111568258-111568292:111568996-111569010	14q22	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40298 (predicted) (RGD1562229_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650453-S	ILMN_280094	RGD1562801_PREDICTED	XR_009577.1	XR_009577.1		500627	109479114	XR_009577.1	RGD1562801_predicted		ILMN_1350795	0000450427	S	1172	TTTCAGAGCAGACTTCCCAAACCCATGCTGCCAAAAGTTTGCCCCCTGTC				6q14	PREDICTED: Rattus norvegicus similar to RNA, U transporter 1 (predicted) (RGD1562801_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32189349-S	ILMN_264172	SLC25A5	NM_057102.1	NM_057102.1		25176	32189349	NM_057102.1	Slc25a5	NP_476443.1	ILMN_1363856	0000130463	S	716	CTGCTGTTGCTGGCCTAACTTCTTATCCTTTTGACACGGTTCGCCGTCGT	X	-	8073005-8073054	Xq12	Rattus norvegicus solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (Slc25a5), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Ant2	Ant2
Rattus norvegicus	RefSeq	GI_62648723-S	ILMN_60613	USP45_PREDICTED	XM_232828.4	XM_232828.4		313098	109474684	XM_232828.4	Usp45_predicted	XP_232828.3	ILMN_1355612	0002940722	S	2337	GGGAGGCCACTGGGTCCATGTCAGCGACACTTATGTGCAAGTGGTTCCAG	5	+	36587539-36587588	5q21	PREDICTED: Rattus norvegicus ubiquitin specific petidase 45 (predicted) (Usp45_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981405-S	ILMN_285949	PRLR	NM_012630.1	NM_012630.1		24684	6981405	NM_012630.1	Prlr	NP_036762.1	ILMN_2039404	0005820131	S	1142	GCTGCAGACTCAAATAGGAGCCTCTCAAAATGGGTTCTACCACCATCGCA	2	+	59700982-59701031	2q16	Rattus norvegicus prolactin receptor (Prlr), transcript variant 2, mRNA.	The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity [goid 7171] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence ISS]	Combining with prolactin to initiate a change in cell activity [goid 4925] [evidence IMP]; Combining with prolactin to initiate a change in cell activity [goid 4925] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]	RATPRLR; MGC105486	RATPRLR; MGC105486
Rattus norvegicus	RefSeq	GI_13591996-S	ILMN_298104	ALDH6A1	NM_031057.1	NM_031057.1		81708	13591996	NM_031057.1	Aldh6a1	NP_112319.1	ILMN_1354510	0000460647	S	1971	TCTGATGACTTGGAGGGACAACGTAGGGGCCCGGTCCTTGGCAATCTTCG				6q31	Rattus norvegicus aldehyde dehydrogenase family 6, subfamily A1 (Aldh6a1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base [goid 6210] [evidence IDA]; The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid [goid 6573] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of valine, 2-amino-3-methylbutanoic acid [goid 6574] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins [goid 19484] [evidence IDA]; The chemical reactions and pathways involving thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base [goid 19859] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence ISS]; Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+ [goid 4491] [evidence NAS]; Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+ [goid 4491] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A [goid 16790] [evidence IDA]; Catalysis of the reaction: 3-oxopropanoate + CoA + NADP+ = acetyl-CoA + CO2 + NADPH + H+ [goid 18478] [evidence IDA]	Mmsdh	Mmsdh
Rattus norvegicus	RefSeq	GI_62638472-S	ILMN_51133	ZBTB2_PREDICTED	XM_217825.3	XM_217825.3		308126	109457710	XM_217825.3	Zbtb2_predicted	XP_217825.1	ILMN_1353062	0002450603	S	1421	CCAGAACTCAGATGTGTTTGCCCTGGATGAGGGGCGGTCAGTCCTTCTGG	1	-	35077949-35077998	1p11	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 2 (predicted) (Zbtb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642754-S	ILMN_273265	RGD1562964_PREDICTED	XR_008058.1	XR_008058.1		365633	109465839	XR_008058.1	RGD1562964_predicted		ILMN_1357881	0000780707	S	265	TCGCCATGAAGAAAGCTGGGCCATACCTGAAGGGTGGAGCCAAACAAGTT				2q11	PREDICTED: Rattus norvegicus similar to glyceraldehyde-phosphate-dehydrogenase (predicted) (RGD1562964_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638798-S	ILMN_272757	LOC682235	XR_007853.1	XR_007853.1		682235	109460930	XR_007853.1	LOC682235		ILMN_1370535	0006020332	S	2445	ATCTTGGCTTCTACTGCAGGGTTGCTGGGGTGTATCTCTGTCCCAAAGTG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (LOC682235), mRNA.					
Rattus norvegicus	RefSeq	GI_27687100-S	ILMN_61909	LOC291218	XM_238009.1	XM_238009.1		291218	27687100	XM_238009.1	LOC291218	XP_238009.1	ILMN_1350672	0001450494	S	320	ACGTGAGCAACTCTGAAAAGCACAGCAGCAAGCCAAGAGGCCACCAGGAG					PREDICTED: Rattus norvegicus hypothetical LOC291218 (predicted) (LOC291218), mRNA.					
Rattus norvegicus	RefSeq	GI_62638197-S	ILMN_60226	LOC292455	XM_218050.2	XM_218050.2		292455	62638197	XM_218050.2	LOC292455	XP_218050.2	ILMN_1374538	0006650164	S	702	GCACGAGGAAAGAACAAGTAGGTATTACCTGGATTGTCAGAAGGCACTTC				1p13	PREDICTED: Rattus norvegicus similar to Retinoic acid early inducible protein 1 gamma precursor (RAE-1gamma) (LOC292455), mRNA.					
Rattus norvegicus	RefSeq	GI_62648781-S	ILMN_268767	RARSL_PREDICTED	XM_001065097.1	XM_001065097.1		297969	109476311	XM_001065097.1	Rarsl_predicted	XP_001065097.1	ILMN_1371255	0000360176	S	1646	ACTCCAAGTGAAAGACAGTCCTCCTGAAGTGGCTGGGGCCAGACTTCACC				5q21	PREDICTED: Rattus norvegicus arginyl-tRNA synthetase-like (predicted) (Rarsl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648053	ILMN_297053	TSEN2	NM_001014057.1	NM_001014057.1		312649	62078846	NM_001014057.1	Tsen2	NP_001014079.1	ILMN_1650034	0004060372	S	1231	GCTGGAAGTCACTGGCCGCCTTGAGCAGAGTCTCAGGGAACGTCTCAAAG	4	+	151707011-151707060	4q42	Rattus norvegicus tRNA splicing endonuclease 2 homolog (S. cerevisiae) (Tsen2), mRNA.	A complex that catalyzes the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron [goid 214] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A complex that catalyzes the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron [goid 214] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons [goid 6388] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons [goid 6388] [evidence IEA]	Catalysis of the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron [goid 213] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron [goid 213] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]	RGD1309946	RGD1309946
Rattus norvegicus	RefSeq	GI_62667009-S	ILMN_61294	RGD1559970_PREDICTED	XM_578993.2	XM_578993.2		503444	109510811	XM_578993.2	RGD1559970_predicted	XP_578993.2	ILMN_1374119	0002940091	S	155	CTAAGTCTTCCAGCACTCCCAAGGCAAGTCAGAAAGCAAAACCATCTGCC	X	-	79421661-79421710	Xq22	PREDICTED: Rattus norvegicus similar to melanoma antigen 2 (predicted) (RGD1559970_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653775-S	ILMN_267551	RGD1564007_PREDICTED	XM_001073229.1	XM_001073229.1		300761	109484794	XM_001073229.1	RGD1564007_predicted	XP_001073229.1	ILMN_1374792	0002510451	S	1082	TTCCGAATCGCCCGGCTGGAGCAGCAGTTATGTTCCCTGAACTGGGGCAG				8q24	PREDICTED: Rattus norvegicus similar to HCV NS3-transactivated protein 2 (predicted) (RGD1564007_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34933430-S	ILMN_264521	KCND1	XM_001063865.1	XM_001063865.1		116695	109511585	XM_001063865.1	Kcnd1	XP_001063865.1	ILMN_1373195	0002640167	S	2811	CCAGCAAGAGCTGGCGTGGGCTGGTTTCATATTCTTGGGCAGAAATCCAG				Xq13	PREDICTED: Rattus norvegicus potassium voltage-gated channel, Shal-related family, member 1 (Kcnd1), mRNA.					
Rattus norvegicus	RefSeq	GI_34869888-S	ILMN_161837	LOC362547	XM_342868.1	XM_342868.1			34869888	XM_342868.1	LOC362547		ILMN_2040358	0005550608	S	1324	GTATGGAAGATACCAGCGCAAAATGACCAGGGAGCTGAGGGCAGCGGTCC					Rattus norvegicus similar to Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) (My046 protein) (LOC362547), mRNA.					
Rattus norvegicus	RefSeq	GI_62653476-S	ILMN_265150	SRPR	NM_001034150.1	NM_001034150.1		315548	77627978	NM_001034150.1	Srpr	NP_001029322.1	ILMN_1361781	0002760338	S	2563	GCCCCAAAGCATCAGTTAGGCCTTGTTACAAATGCGAGGTAAGTGCCCAC	8	+	34997921-34997970	8q21	Rattus norvegicus signal recognition particle receptor ('docking protein') (Srpr), mRNA.	A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex [goid 5785] [evidence IEA]; A complex of protein and RNA which facilitates translocation of proteins across membranes [goid 48500] [evidence IEA]	The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane [goid 6614] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with the signal recognition particle [goid 5047] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with 7S RNA, the RNA component of the signal recognition particle (SRP) [goid 8312] [evidence IEA]	MGC124867	MGC124867
Rattus norvegicus	RefSeq	GI_62655426-S	ILMN_269125	PDCD1_PREDICTED	XM_001069663.1	XM_001069663.1		301626	109487554	XM_001069663.1	Pdcd1_predicted	XP_001069663.1	ILMN_1357025	0000840047	S	801	TGATGGCCCACAGGGTCCTCGGCCTCCAAGACATGAGGATGGACACTGCT				9q36	PREDICTED: Rattus norvegicus programmed cell death 1 (predicted) (Pdcd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663490-S	ILMN_300254	RGD1565561_PREDICTED	XM_001061818.1	XM_001061818.1		498741	109505679	XM_001061818.1	RGD1565561_predicted	XP_001061818.1	ILMN_1365849	0005700164	S	2370	TGTATTGGCCCTGAGAAGGCACCCAGATACCAACACTGTCAAAGGTGGCC				17p12	PREDICTED: Rattus norvegicus similar to O-acyltransferase (membrane bound) domain containing 1 (predicted) (RGD1565561_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14010870-S	ILMN_279605	DPP7	NM_031973.1	NM_031973.1		83799	14010870	NM_031973.1	Dpp7	NP_114179.1	ILMN_1370366	0003710438	S	1526	GCCTAAGTAGCAGCCTTCCAGCCGAGATGCAGCAAACCCAGAGACCCTGT	3	-	3515097-3515137:3515138-3515146	3p13	Rattus norvegicus dipeptidylpeptidase 7 (Dpp7), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IMP]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain [goid 8239] [evidence IDA]	Dpp2	Dpp2
Rattus norvegicus	RefSeq	GI_8393991-S	ILMN_290307	PMP22	NM_017037.1	NM_017037.1		24660	8393991	NM_017037.1	Pmp22	NP_058733.1	ILMN_1373876	0000070347	S	1542	AGCCTTCGTCACTCCCACAGTTTTCTCACGGTCGGAGCATCAGGACGAGC	10	+	49335589-49335638	10q23	Rattus norvegicus peripheral myelin protein 22 (Pmp22), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs [goid 43218] [evidence IMP]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IDA]; The process by which the wraps of cell membrane that constitute myelin are laid down around an axon in the central or peripheral nervous system [goid 32288] [evidence IEA]; The process by which the wraps of cell membrane that constitute myelin are laid down around an axon in the central or peripheral nervous system [goid 32288] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IDA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IMP]		Gas-3	Gas-3
Rattus norvegicus	RefSeq	GI_62644673-S	ILMN_66112	LOC499741	XM_575076.1	XM_575076.1		499741	62644673	XM_575076.1	LOC499741	XP_575076.1	ILMN_1351206	0004230451	S	546	AGTAGAAGTAGCTTTTACGGTGTCCAGTTCAGCAACCTCTACATGGGCAC					PREDICTED: Rattus norvegicus similar to nidogen 2 (LOC499741), mRNA.					
Rattus norvegicus	RefSeq	GI_16923991-S	ILMN_298429	EBP	NM_057137.1	NM_057137.1		117278	16923991	NM_057137.1	Ebp	NP_476478.1	ILMN_1368887	0001230022	S	934	AGGGCCAGAGTCAGAAAAGGTAGGGAACATGCGGAGCTACTGCCAGGGAC	X	+	26337421-26337470	Xq13	Rattus norvegicus emopamil binding protein (sterol isomerase) (Ebp), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence TAS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence TAS]; The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16126] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]	Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols [goid 247] [evidence IDA]; Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols [goid 247] [evidence TAS]; Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols [goid 247] [evidence ISS]; Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols [goid 247] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Catalysis of the reaction: 5-alpha-cholest-7-en-3-beta-ol = 5-alpha-cholest-8-en-3-beta-ol [goid 47750] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646980-S	ILMN_67666	RGD1566215_PREDICTED	XM_217496.4	XM_217496.4		301742	109471870	XM_217496.4	RGD1566215_predicted	XP_217496.4	ILMN_1374232	0006770438	S	1679	GGGTAGTCCTGGAGAATGAGGCTGTCAGAGCTGGTGAGTCATTAGAACAC	4	-	57859142-57859191	4q22	PREDICTED: Rattus norvegicus similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (predicted) (RGD1566215_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641708-S	ILMN_53986	RAD9_PREDICTED	XM_219684.3	XM_219684.3		309151	62641708	XM_219684.3	Rad9_predicted	XP_219684.3	ILMN_1374834	0003060563	S	860	GCCTCAGAAGCAGCCACACAGCACACCCCACTCAGATGACTTTACCAATG					PREDICTED: Rattus norvegicus RAD9 homolog (S. pombe) (predicted) (Rad9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47087086-S	ILMN_288201	ZNRD1	NM_213567.1	NM_213567.1		361784	47087086	NM_213567.1	Znrd1	NP_998732.1	ILMN_1372578	0003990195	S	251	AGTAGTTGACAGGCGCTGCTCCCGATGTGGTCACGAGGGAATGGCATACT	20	+	1688329-1688332:1688497-1688542	20p12	Rattus norvegicus zinc ribbon domain containing, 1 (Znrd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tctex6; HTEX-6	Tctex6; HTEX-6
Rattus norvegicus	RefSeq	GI_62641652-S	ILMN_51234	LOC499293	XM_579942.1	XM_579942.1		499293	62641652	XM_579942.1	LOC499293	XP_579942.1	ILMN_1366520	0005570110	S	5	CTGCTGAAGACTTTGAAAGGGACTATGTTGGTCTTCCCTACGGATGGAGG					PREDICTED: Rattus norvegicus LOC499293 (LOC499293), mRNA.					
Rattus norvegicus	RefSeq	GI_62662130-S	ILMN_66448	LOC502040	XM_577473.1	XM_577473.1		502040	62662130	XM_577473.1	LOC502040	XP_577473.1	ILMN_1358661	0002510377	S	809	ACCGCTGAGGAGTAAGAGAAAAGGTGGCCGTGCGGAAACAGAAGGAGCGG					PREDICTED: Rattus norvegicus similar to Gpc6 protein (LOC502040), mRNA.					
Rattus norvegicus	RefSeq	GI_62642462-S	ILMN_65486	RGD1307961_PREDICTED	XM_219988.4	XM_219988.4		309467	109460196	XM_219988.4	RGD1307961_predicted	XP_219988.3	ILMN_1349943	0003290594	S	3000	TTAAGCTGGCCCTTGCCATAGAGCTGATCTTTCGTTACAGTCGCACTGAC	1	+	253437470-253437519	1q54	PREDICTED: Rattus norvegicus similar to CG5882-PA (predicted) (RGD1307961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639867-S	ILMN_67919	LOC502330	XM_577795.1	XM_577795.1		502330	62639867	XM_577795.1	LOC502330	XP_577795.1	ILMN_1360098	0000070593	S	4417	GCTCAGCTATCCTGCTGAAGCCGCCACAAGGCACCCGGAAGATCCCGCCT					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502330), mRNA.					
Rattus norvegicus	RefSeq	GI_62656911-S	ILMN_54465	TBX21_PREDICTED	XM_220914.4	XM_220914.4		303496	109488894	XM_220914.4	Tbx21_predicted	XP_220914.4	ILMN_1369113	0003520162	S	1637	AGCGACTCAGGACTAGGCGAGGGAGACACTAAGAGGAGGAGAATATCCCC	10	-	85818536-85818585	10q31	PREDICTED: Rattus norvegicus T-box 21 (predicted) (Tbx21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651992-S	ILMN_69866	MYBPC1	XM_343196.3	XM_343196.3		362867	109480434	XM_343196.3	Mybpc1	XP_343197.3	ILMN_1363900	0000520736	S	3446	GGAGTCTGTACCCTGGAGATCCGTAAGCCTAGTCCCTATGACGGAGGCAC	7	-	25218755-25218804	7q13	PREDICTED: Rattus norvegicus myosin binding protein C, slow type (Mybpc1), mRNA.	Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62641564-S	ILMN_69404	RGD1562481_PREDICTED	XM_579938.2	XM_579938.2		499283	109459565	XM_579938.2	RGD1562481_predicted	XP_579938.2	ILMN_1362252	0003850487	S	487	CGTCATAGAAAGCTGTTCCCTAGCACGAGGGACATGCCACATCTCGCCTG	1	+	199653951-199654000	1q41	PREDICTED: Rattus norvegicus RGD1562481 (predicted) (RGD1562481_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.66325	ILMN_284074	FAM89A	NM_001011711.1	NM_001011711.1		361441	58743348	NM_001011711.1	Fam89a	NP_001011711.1	ILMN_1530307	0006370048	S	1283	ATGTTTTTAAGCAGAACTTACCCGAACCCTTAAAATATTTATTAAAACCC	19	-	54922534-54922583	19q12	Rattus norvegicus family with sequence similarity 89, member A (Fam89a), mRNA.				MGC124908	MGC124908
Rattus norvegicus	RefSeq	GI_62650004-S	ILMN_58755	LOC500585	XM_575954.1	XM_575954.1		500585	62650004	XM_575954.1	LOC500585	XP_575954.1	ILMN_1359136	0003140403	S	2002	ACAATCTATTACTTTTGGGAAGTCCTGGTGGGAGACTCGCCCCGGAGTCC				5q36	PREDICTED: Rattus norvegicus similar to BC021442 protein (LOC500585), mRNA.					
Rattus norvegicus	RefSeq	GI_13242300-S	ILMN_268774	HSD17B2	NM_024391.1	NM_024391.1		79243	13242300	NM_024391.1	Hsd17b2	NP_077367.1	ILMN_1353855	0007040139	S	1064	TGCTCAGGGAGAATGACTTACCTGTGGATCTGCTTCGCGGCCTACTCCCC	19	-	47729674-47729723	19q12	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 2 (Hsd17b2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IDA]; Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: testosterone + NAD+ = androst-4-ene-3,17-dione + NADH [goid 50327] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.115416	ILMN_161440	RN.115416	Rn.115416		Rn.115416		57597212	CX570181			ILMN_1530396	0004810685	S	862	CTGTAAAATGAATTATGGAAAACCAGATGTAAAGTCCTCCTGAAAGTGTT					RVL1306 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_48675859-S	ILMN_265527	EIF2B3	NM_133609.2	NM_133609.2		171145	48675859	NM_133609.2	Eif2b3	NP_598293.2	ILMN_1370324	0003780148	S	1348	GTGGTCGAGGCGGGCGCGGAGATCAGGGACTGTTTAATTGGAAGTGGTCA				5q36	Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 3 (Eif2b3), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence IDA]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]; A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon [goid 5851] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 6417] [evidence IMP]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IDA]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system [goid 14003] [evidence ISS]; Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress [goid 32057] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 51716] [evidence ISS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence ISS]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IDA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence ISS]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658518-S	ILMN_263678	SNX8_PREDICTED	XM_001065004.1	XM_001065004.1		288504	109496536	XM_001065004.1	Snx8_predicted	XP_001065004.1	ILMN_1352389	0001190093	S	1242	CTCCCAGATCCAAGGGCACAAGGAGATGAGCAAGGTGTGGAATGACCTGA				12q11	PREDICTED: Rattus norvegicus sorting nexin 8 (predicted) (Snx8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799424-S	ILMN_279065	FAIM2	NM_144756.2	NM_144756.2		246274	56799424	NM_144756.2	Faim2	NP_653357.1	ILMN_1353723	0006350603	S	1302	GTTTGCAGAGACCCCAGAAATGAGTGGGAGGAGCCCAGAGGTGGGAAGGA	7	-	138246507-138246556	7q36	Rattus norvegicus Fas apoptotic inhibitory molecule 2 (Faim2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEP]		NMP35; Lfg; MGC105316	NMP35; Lfg; MGC105316
Rattus norvegicus	RefSeq	GI_57012341-S	ILMN_263073	RT1-A2	NM_001008829.1	NM_001008829.1		24974	57012341	NM_001008829.1	RT1-A2	NP_001008829.1	ILMN_1349776	0002570068	S	939	CGTCCTTGGAGCCATCATTGGAACTCTGGCCATCATTGGAATTGTAGTGG	20	+	5024214-5024263	20p12	Rattus norvegicus RT1 class Ia, locus A2 (RT1-A2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1A-2; MGC95123; RT1.A2(N)	RT1A-2; MGC95123; RT1.A2(N)
Rattus norvegicus	RefSeq	GI_62641815-S	ILMN_59970	RGD1565152_PREDICTED	XM_574608.2	XM_574608.2		499308	109459802	XM_574608.2	RGD1565152_predicted	XP_574608.1	ILMN_1372310	0006370609	S	3250	GCAGCCGTCCTTCTGGCTGCTCACGGGTGACAACTCAATGAAAGGTTTTC	1	-	209767666-209767715	1q43	PREDICTED: Rattus norvegicus similar to fibronectin leucine rich transmembrane protein 1 (predicted) (RGD1565152_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647124-S	ILMN_51627	LOC500100	XM_575451.1	XM_575451.1		500100	62647124	XM_575451.1	LOC500100	XP_575451.1	ILMN_1364938	0004230131	S	453	GCTGACAAGCTGGAGTGGGATCTGAAGGCTGTCAAGAATGAGGATTGCTG					PREDICTED: Rattus norvegicus similar to cell division cycle 42 (LOC500100), mRNA.					
Rattus norvegicus	RefSeq	GI_62642152-S	ILMN_51235	MLANA_PREDICTED	XM_215234.3	XM_215234.3		293890	109460019	XM_215234.3	Mlana_predicted	XP_215234.1	ILMN_1364447	0005290102	S	511	CTTCAGACCACTCGCCACCACCATATTCACCCTGAGAGCCGAGAAGCTGC	1	+	233423736-233423770:233423771-233423785	1q52	PREDICTED: Rattus norvegicus melan-A (predicted) (Mlana_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393961-S	ILMN_269744	PITPNA	NM_017231.1	NM_017231.1		29525	8393961	NM_017231.1	Pitpna	NP_058927.1	ILMN_1352480	0005690687	S	1452	CTTGGGGAGAGAGGAGGAGTTAAAAATACAGAGACACCTACCCTAGCTCC	10	+	62948670-62948719	10q24	Rattus norvegicus phosphatidylinositol transfer protein, alpha (Pitpna), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Enables the directed movement of phosphatidylinositol into, out of, within or between cells. Phosphatidylinositol refers to any glycophospholipids with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 8526] [evidence TAS]	Pitpn	Pitpn
Rattus norvegicus	RefSeq	GI_62657053-S	ILMN_62879	RAB5C_PREDICTED	XM_213463.4	XM_213463.4		287709	109489024	XM_213463.4	Rab5c_predicted	XP_213463.1	ILMN_1351947	0002630524	S	1803	GAAAGAGGCCCTGCTGTTGGCAGCTCTGATGGTGGAGGATAGGACTGACC	10	-	89652392-89652441	10q32.1	PREDICTED: Rattus norvegicus RAB5C, member RAS oncogene family (predicted) (Rab5c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659273-S	ILMN_268828	LOC498222	XM_001058496.1	XM_001058496.1		498222	109498588	XM_001058496.1	LOC498222	XP_001058496.1	ILMN_1365719	0005690605	S	2082	CTGATGGGCACAGGAGGGAGGCTCTGAAGAAACTGGGACTGCTGAAGGAG				13q13	PREDICTED: Rattus norvegicus similar to specifically androgen-regulated protein (LOC498222), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660890-S	ILMN_60734	RGD1564874_PREDICTED	XM_234082.4	XM_234082.4		298981	109499949	XM_234082.4	RGD1564874_predicted	XP_234082.4	ILMN_1363291	0002810601	S	687	GAACCGACGAACCAAGTGGAAGAAACAAAATCCTGGCGCTGACACCAGCG	14	-	83216591-83216640	14q21	PREDICTED: Rattus norvegicus similar to homeodomain protein Sax2 (predicted) (RGD1564874_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640859-S	ILMN_57916	ALPK3_PREDICTED	XM_344916.3	XM_344916.3		365298	109458989	XM_344916.3	Alpk3_predicted	XP_344917.3	ILMN_1359564	0003170427	S	4826	GTGCCCACCCTCAAACCAAGGCCAAAGGCTCCAAAAGTCCATCTGCTGGC	1	+	137303079-137303128	1q31	PREDICTED: Rattus norvegicus alpha-kinase 3 (predicted) (Alpk3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666490-S	ILMN_265609	RGD1559949_PREDICTED	XR_007876.1	XR_007876.1		367706	109512469	XR_007876.1	RGD1559949_predicted		ILMN_1349903	0004810735	S	535	CAGCTACAAGATGATGAGGATGGAATGGCGATGACTACAAACCGAGACAG				Xq12	PREDICTED: Rattus norvegicus similar to Protein phosphatase inhibitor 2 (IPP-2) (predicted) (RGD1559949_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647005-S	ILMN_68803	RGD1306697_PREDICTED	XM_231599.4	XM_231599.4		312225	109471850	XM_231599.4	RGD1306697_predicted	XP_231599.4	ILMN_1354929	0003870170	S	2086	CAGAGGGCAATTACATGCTGACGTGCTCTGCCACAGGGGGCCTCATCTAC	4	-	62270032-62270081	4q22	PREDICTED: Rattus norvegicus similar to HSPC049 protein (predicted) (RGD1306697_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662252-S	ILMN_58333	LOC290579	XM_224650.3	XM_224650.3		290579	62662252	XM_224650.3	LOC290579	XP_224650.3	ILMN_1363438	0001050102	S	711	ATGGTGCCCACGGTGTTGAAGCTGTTTTGTCCTCGGCAGATCCTCATGGC				16p15	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7 (LOC290579), mRNA.					
Rattus norvegicus	RefSeq	GI_47576866-S	ILMN_270367	OLR813	NM_001000846.1	NM_001000846.1		405136	47576866	NM_001000846.1	Olr813	NP_001000846.1	ILMN_1355255	0006660041	S	583	GAGGTCATGGTTTTGGCTGGGGCTGTGTCTGTGCTTGTGGGACCATTTTC	4	+	70818322-70818371	4q23	Rattus norvegicus olfactory receptor 813 (Olr813), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr813	Olr813
Rattus norvegicus	RefSeq	GI_62663506-S	ILMN_265283	RGD1563311_PREDICTED	XR_008597.1	XR_008597.1		361061	109505739	XR_008597.1	RGD1563311_predicted		ILMN_1354975	0001230156	S	374	GAGGCTGCTGGCCCATGCTGAGAAGAAAGCTGGTGGTAAAGGGGACGTTC				17p11	PREDICTED: Rattus norvegicus RGD1563311 (predicted) (RGD1563311_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659118-S	ILMN_68148	LOC498201	XM_573419.1	XM_573419.1		498201	62659118	XM_573419.1	LOC498201	XP_573419.1	ILMN_1361924	0003990215	S	627	GAGGTAATGAGCACCCCCGTCCCCACAGCACCTCAGTTTGTGAGAGAACA					PREDICTED: Rattus norvegicus similar to hypothetical protein C130098D09 (LOC498201), mRNA.					
Rattus norvegicus	RefSeq	GI_62659428-S	ILMN_70311	CFHL1_PREDICTED	XM_222695.3	XM_222695.3		289057	62659428	XM_222695.3	Cfhl1_predicted	XP_222695.3	ILMN_1353199	0004200451	S	932	CTGGTCAGTTATCCTGTATGCAGCGAAATTCCTGGGAAGCCTTCAGACTG					PREDICTED: Rattus norvegicus complement component factor h-like 1 (predicted) (Cfhl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50511315-A	ILMN_266389	AHI1	NM_001002277.1	NM_001002277.1		308923	50511315	NM_001002277.1	Ahi1	NP_001002277.1	ILMN_1376418	0003450497	S	2811	CGAAGACTGGTGGTACGGCAGCTTAGGAAAGGGGCAGGAAGGGTTCTTTC	1	+	16431225-16431274	1p12	Rattus norvegicus Abelson helper integration site 1 (Ahi1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Ahi-1	Ahi-1
Rattus norvegicus	RefSeq	GI_62649708-S	ILMN_272655	RGD1564943_PREDICTED	XM_001060653.1	XM_001060653.1		500551	109477292	XM_001060653.1	RGD1564943_predicted	XP_001060653.1	ILMN_2040693	0007650603	S	740	TGCCTTTGACAAGGATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCA				5q36	PREDICTED: Rattus norvegicus similar to 4930429A08Rik protein (predicted) (RGD1564943_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641771-S	ILMN_279718	DPF2_PREDICTED	XM_001074896.1	XM_001074896.1		361711	109463406	XM_001074896.1	Dpf2_predicted	XP_001074896.1	ILMN_1353927	0002450129	S	921	GCCTGGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTG				1q43	PREDICTED: Rattus norvegicus D4, zinc and double PHD fingers family 2 (predicted) (Dpf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661421-S	ILMN_63944	LOC498509	XM_573770.1	XM_573770.1		498509	62661421	XM_573770.1	LOC498509	XP_573770.1	ILMN_1348829	0001570408	S	5	TCGCTTCTCTCTGTGTTTTCAACATCTAAGGATCATGAACATTGTCGAGG					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC498509), mRNA.					
Rattus norvegicus	RefSeq	GI_62652196-S	ILMN_265228	RGD1308261_PREDICTED	XM_001081031.1	XM_001081031.1		299818	109482012	XM_001081031.1	RGD1308261_predicted	XP_001081031.1	ILMN_1374521	0002370671	S	885	CTGCCTGATATGGAGTATTGTGAGACACCTCAATCTTGTGAGCATGAGTC				7q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1190005P17 (predicted) (RGD1308261_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645562	ILMN_64960	RGD1310006_PREDICTED	XM_342492.2	XM_342492.2		362191	62645562	XM_342492.2	RGD1310006_predicted	XP_342493.2	ILMN_1649794	0006590131	S	1343	ACATGCATTCAACATACCTACAAACCGCCTTGCCTCAGGAGAAGGCTAAG				3q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730421E18 (predicted) (RGD1310006_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663670-S	ILMN_62086	RGD1564129_PREDICTED	XM_341541.3	XM_341541.3		361257	109505054	XM_341541.3	RGD1564129_predicted	XP_341542.3	ILMN_1363256	0002850014	S	745	TGCTCTGGGAACCAGATGTAACATCAGCAGTCCAGCCAGCACAGCCGGTA	17	+	62686400-62686420:62686421-62686449	17q12.1	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1564129_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657850-S	ILMN_291790	RETNLB	NM_001024281.1	NM_001024281.1		498074	66730352	NM_001024281.1	Retnlb	NP_001019452.1	ILMN_1365931	0005270156	S	106	GCTGATGGTCCCAGGGAACACGCAGTGCTCCTTTGAGTCTTTGGTGGATC	11	-	53228547-53228596	11q21	Rattus norvegicus resistin like beta (Retnlb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Retnlb	Retnlb
Rattus norvegicus	RefSeq	GI_62661587-S	ILMN_277551	MTMR6_PREDICTED	XM_001065057.1	XM_001065057.1		305935	109502549	XM_001065057.1	Mtmr6_predicted	XP_001065057.1	ILMN_1370807	0003290086	S	2420	CGGTTGGTTCTGTGGCCTTTATAGCCGAGGACAGGATGTCTGATCTCTCC				15p12	PREDICTED: Rattus norvegicus myotubularin related protein 6 (predicted) (Mtmr6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664235-S	ILMN_51577	LOC498842	XM_574127.1	XM_574127.1		498842	62664235	XM_574127.1	LOC498842	XP_574127.1	ILMN_1366794	0005420601	S	609	ACGGTATCAAGTGGGAAAGGTGTGGAGGCGAGAGAGTCCAGCTATAGTCC					PREDICTED: Rattus norvegicus similar to Histidyl-tRNA synthetase-like (LOC498842), mRNA.					
Rattus norvegicus	RefSeq	GI_47577616-S	ILMN_276347	OLR539	NM_001000320.1	NM_001000320.1		295790	47577616	NM_001000320.1	Olr539	NP_001000320.1	ILMN_1373436	0004780154	S	326	CTACAGAGGGCTTTCTCCTGGCCGCAATGGCTTTTGACCGTTACATGGCC	3	-	70439144-70439193	3q24	Rattus norvegicus olfactory receptor 539 (Olr539), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr539	Olr539
Rattus norvegicus	RefSeq	GI_62656158-S	ILMN_291895	RGD1563669_PREDICTED	XM_001077303.1	XM_001077303.1		497914	109490852	XM_001077303.1	RGD1563669_predicted	XP_001077303.1	ILMN_1369112	0004010364	S	669	CCCTGAGCTCCTCCCACTCCCACTATCAGCATGGCATCAGGTACATACTG				10q22	PREDICTED: Rattus norvegicus similar to Mediator of RNA polymerase II transcription, subunit 9 homolog (predicted) (RGD1563669_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923941-S	ILMN_49961	ODZ3_PREDICTED	XM_224841.4	XM_224841.4		306451	109503359	XM_224841.4	Odz3_predicted	XP_224841.4	ILMN_1357290	0000450037	S	8284	GCAGACACCCTCGGCGCAGACACAGGCAACACAAACCAGAAACAAAGACG	16	+	47146831-47146880	16q11	PREDICTED: Rattus norvegicus odd Oz/ten-m homolog 3 (Drosophila) (predicted) (Odz3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662641-S	ILMN_49961	ODZ3_PREDICTED	XM_224841.4	XM_224841.4		306451	109503359	XM_224841.4	Odz3_predicted	XP_224841.4	ILMN_1357785	0004560164	S	7849	ACGGTGGTGAACGGCAGGACTCGCAGGTTCGCTGACGTGGAGATGCAGTT	16	+	47146396-47146445	16q11	PREDICTED: Rattus norvegicus odd Oz/ten-m homolog 3 (Drosophila) (predicted) (Odz3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663665-S	ILMN_283037	SVIL_PREDICTED	XM_001056293.1	XM_001056293.1		361256	109505903	XM_001056293.1	Svil_predicted	XP_001056293.1	ILMN_1362866	0000580408	S	7166	AGCCTTAGGTCTGGCTTGTGCCGAGTTCTGCTTCCGGTGCTAAAGCGAGC				17q12.1	PREDICTED: Rattus norvegicus supervillin (predicted) (Svil_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655558-S	ILMN_278176	RGD1307234_PREDICTED	XM_001056555.1	XM_001056555.1		316732	109487659	XM_001056555.1	RGD1307234_predicted	XP_001056555.1	ILMN_1367008	0006660458	S	5803	GGCCTTCAGAATAAAGCCCCACCAATGGACAAACTCCGGGGAATGGTCTT				9q38	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4931400A14 (predicted) (RGD1307234_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653533-S	ILMN_286532	RGD1562294_PREDICTED	XM_001059357.1	XM_001059357.1		500981	109484531	XM_001059357.1	RGD1562294_predicted	XP_001059357.1	ILMN_1371482	0005340672	S	2425	GGCTGCTCTAGATCCTGGAGACTACTTAACAGCCTCAACTTCAGTGTGGT				8q22	PREDICTED: Rattus norvegicus similar to zinc finger protein 202 (predicted) (RGD1562294_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929169-S	ILMN_277692	DVL1	NM_031820.1	NM_031820.1		83721	13929169	NM_031820.1	Dvl1	NP_114008.1	ILMN_1365964	0002510086	S	2648	CAGTGGGGCAGTTTGCACGCTCCTTTCCTCACCTGCAACTCGGCACATGA	5	+	172717319-172717368	5q36	Rattus norvegicus dishevelled, dsh homolog 1 (Drosophila) (Dvl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence IDA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Any process that modulates levels of neurotransmitter [goid 1505] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence TAS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IEA]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases [goid 48365] [evidence IPI]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	dvl-1	dvl-1
Rattus norvegicus	RefSeq	GI_62655750-S	ILMN_287013	RGD1306729_PREDICTED	XM_001055518.1	XM_001055518.1		302964	109490256	XM_001055518.1	RGD1306729_predicted	XP_001055518.1	ILMN_1354165	0005270441	S	1591	TTCCGAAGGACCTGAGGGTTGGGGGCCAGGACTACCTTTTCTCACTCTGG				10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC47347 (predicted) (RGD1306729_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653813-S	ILMN_273326	RGD1562639_PREDICTED	XR_009072.1	XR_009072.1		315756	109484867	XR_009072.1	RGD1562639_predicted		ILMN_1368492	0004590333	S	5929	TGTGACAGGCCACCAAGCACGGGAGTGATGGAGTGCCGGAAAACCTTTGG				8q24	PREDICTED: Rattus norvegicus similar to c-myc promoter binding protein (predicted) (RGD1562639_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654391-S	ILMN_54638	RGD1563130_PREDICTED	XM_236660.4	XM_236660.4		316022	109484013	XM_236660.4	RGD1563130_predicted	XP_236660.4	ILMN_1352248	0000110438	S	8734	CCCGATCATTGAAGAAGGCAAAGTGGTGGTGCAGGACGTTGAGCAGAGCG	8	+	115779515-115779564	8q32	PREDICTED: Rattus norvegicus similar to KIAA0342 protein (predicted) (RGD1563130_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758053-S	ILMN_290225	RRAD	NM_053338.1	NM_053338.1		83521	16758053	NM_053338.1	Rrad	NP_445790.1	ILMN_1366091	0000380551	S	1209	ATAGTGCTGACCAGGGAGGCAACTCCAAACGCCATCGAGCCTGGGCCTAT	19	+	275740-275789	19p14	Rattus norvegicus Ras-related associated with diabetes (Rrad), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642711-S	ILMN_57467	LOC499504	XM_574828.1	XM_574828.1		499504	62642711	XM_574828.1	LOC499504	XP_574828.1	ILMN_1358760	0005900072	S	237	GCCGAGCTTAAAGAGAAGATCGATCATCGTTCTGCTGTGGACAAGAAGGC					PREDICTED: Rattus norvegicus similar to eukaryotic translation elongation factor 1 alpha 2 (LOC499504), mRNA.					
Rattus norvegicus	RefSeq	GI_62656950-S	ILMN_56590	ARHGAP23_PREDICTED	XM_220918.4	XM_220918.4		303501	109488904	XM_220918.4	Arhgap23_predicted	XP_220918.4	ILMN_1348846	0005550546	S	3882	CCCCTGTTGATGACAAGGAGCCACAATCGGTGCCCAACATCGAGTACCTC	10	+	86236561-86236610	10q31	PREDICTED: Rattus norvegicus Rho GTPase activating protein 23 (predicted) (Arhgap23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655554-S	ILMN_54826	LOC367343	XM_346096.2	XM_346096.2		367343	62655554	XM_346096.2	LOC367343	XP_346097.2	ILMN_1350727	0006840050	S	1064	GCTGGAATGGTTCATGGGCAGCCTTGTCACCCTCTCTGTAGTGACTGCTG					PREDICTED: Rattus norvegicus similar to opioid growth factor receptor (LOC367343), mRNA.					
Rattus norvegicus	RefSeq	GI_62078680-S	ILMN_290195	RGD1305007	NM_001013976.1	NM_001013976.1		303749	62078680	NM_001013976.1	RGD1305007	NP_001013998.1	ILMN_1369769	0005420731	S	1122	TTCACGACACCCTAGTGTTGCGATACAGCCCTGTCGGCGAAGGCACTCCT	10	-	110409167-110409216	10q32.3	Rattus norvegicus similar to RIKEN cDNA 1110031I02 (RGD1305007), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor [goid 16706] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655587-S	ILMN_60538	LOC497851	XM_573032.1	XM_573032.1		497851	62655587	XM_573032.1	LOC497851	XP_573032.1	ILMN_1356567	0001170136	S	659	GTGTACAGTGACTGTAATGCTAACTACCAGAGATGCTGAGCTGTCGGGTC					PREDICTED: Rattus norvegicus similar to Ercc4 protein (LOC497851), mRNA.					
Rattus norvegicus	RefSeq	GI_62656448-S	ILMN_67082	LOC501702	XM_577104.1	XM_577104.1		501702	62656448	XM_577104.1	LOC501702	XP_577104.1	ILMN_1373405	0000450008	S	1	TGGAAAATATCTTGCTGTCGGTCATCCATGGTGCTGAGAGCATAACCACC				10q23	PREDICTED: Rattus norvegicus similar to Prr6 protein (LOC501702), mRNA.					
Rattus norvegicus	RefSeq	GI_62642821-S	ILMN_62751	UBE2V1_PREDICTED	XM_215948.3	XM_215948.3		296390	62642821	XM_215948.3	Ube2v1_predicted	XP_215948.3	ILMN_1357056	0006840280	S	988	TCTGAAATTGGCCGCGGGTGAGGAATTCAGGGCTTCCCATCTCCCCACCT				3q42	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2 variant 1 (predicted) (Ube2v1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981423-S	ILMN_280569	PSAP	NM_013013.1	NM_013013.1		25524	6981423	NM_013013.1	Psap	NP_037145.1	ILMN_1368234	0001770273	S	1851	TCCCATTTCTGCTCCAAGGATGAGGACACTTGGGCTTCAGCTCCCCGGCT	20	+	27621247-27621296	20q11	Rattus norvegicus prosaposin (Psap), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IEA]; The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of, within or between cells [goid 46836] [evidence NAS]		SGP-1; SGP1A	SGP-1; SGP1A
Rattus norvegicus	RefSeq	GI_47576124-S	ILMN_294544	OLR1388	NM_001000788.1	NM_001000788.1		405066	47576124	NM_001000788.1	Olr1388	NP_001000788.1	ILMN_1361985	0005900301	S	529	TTCTGTGAGATGCCTGTGTTCCTCAAGTTGGCCTGTGAAGACACCGAAGG	10	+	34751655-34751704	10q21	Rattus norvegicus olfactory receptor 1388 (Olr1388), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1388	Olr1388
Rattus norvegicus	RefSeq	GI_62644935-S	ILMN_56477	LOC296637	XM_216035.4	XM_216035.4		296637	109468018	XM_216035.4	LOC296637	XP_216035.4	ILMN_1365639	0001940164	S	4497	CATGGGCTCTGTGCAGGGACACTACGTTCAACAGGCCAAGCGAGTGGATG	3	+	11341938-11341971:11343190-11343205	3p11	PREDICTED: Rattus norvegicus similar to HLA-B associated transcript-2 isoform a (LOC296637), mRNA.					
Rattus norvegicus	RefSeq	GI_34869224-S	ILMN_273104	UMPS	NM_001025402.1	NM_001025402.1		288051	70794779	NM_001025402.1	Umps	NP_001020573.1	ILMN_1360753	0005910433	S	1133	GGCCACTGGAGACTACACCAAAGCAGCAGTTGGGATGGCTGAGGAGCACT	11	+	68627013-68627040:68628159-68628180	11q22	Rattus norvegicus uridine monophosphate synthetase (Umps), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of pyrimidine bases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors [goid 6207] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6221] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4588] [evidence IEA]; Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4588] [evidence ISS]; Catalysis of the reaction: orotidine 5'-phosphate = UMP + CO2 [goid 4590] [evidence IEA]; Catalysis of the reaction: orotidine 5'-phosphate = UMP + CO2 [goid 4590] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647647-S	ILMN_53386	LOC500216	XM_575567.1	XM_575567.1		500216	62647647	XM_575567.1	LOC500216	XP_575567.1	ILMN_1358072	0004560372	S	1058	GATACCCATAGGCATACAGGAAGCCTACAGAACTCCAAATAGATTGGACC					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500216), mRNA.					
Rattus norvegicus	RefSeq	GI_62639640-S	ILMN_60686	LOC499145	XM_574440.1	XM_574440.1		499145	62639640	XM_574440.1	LOC499145	XP_574440.1	ILMN_1361355	0004560735	S	1181	CTGCGTGTGCATGGGTCTCGTCAGCACTATATTCTTCCCTAGCACCAGCC					PREDICTED: Rattus norvegicus similar to OPPO 1 (LOC499145), mRNA.					
Rattus norvegicus	RefSeq	GI_21245101-S	ILMN_286206	PPAP2C	NM_139252.1	NM_139252.1		246115	21245101	NM_139252.1	Ppap2c	NP_640345.1	ILMN_1357518	0000540142	S	1488	ATGGACCAAATGTGTAGCCAGGCATTGGAAGTCCTGGATCTGCCATCCCC	7	+	11702234-11702283	7q11	Rattus norvegicus phosphatidic acid phosphatase type 2c (Ppap2c), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence NAS]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence ISS]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638250-S	ILMN_273717	RGD1308124_PREDICTED	XR_008811.1	XR_008811.1		308631	109460487	XR_008811.1	RGD1308124_predicted		ILMN_1366374	0006650632	S	4808	CCGCAGACAACAAAGTACGCAGGACCCTGGACACTACGAGGGGATGCTCT				1p12	PREDICTED: Rattus norvegicus similar to KIAA1357 protein (predicted) (RGD1308124_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656243-S	ILMN_56041	LOC497925	XM_579759.1	XM_579759.1		497925	62656243	XM_579759.1	LOC497925	XP_579759.1	ILMN_1365371	0006650025	S	611	CTCAGGTAGGGGAGGAGAAGACCCTGCTCAACACTGCTGCCAACCCTTCA					PREDICTED: Rattus norvegicus LOC497925 (LOC497925), mRNA.					
Rattus norvegicus	RefSeq	GI_17105371-S	ILMN_269406	IL10RA	NM_057193.1	NM_057193.1		117539	17105371	NM_057193.1	Il10ra	NP_476541.1	ILMN_1350106	0003120113	S	1683	CTCTAGTGGCCTCCTGGATAGCCTTGGCACTAATCTGGTCACCCTGCCAT	8	-	48211121-48211170	8q22	Rattus norvegicus interleukin 10 receptor, alpha (Il10ra), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659323-S	ILMN_272705	RGD1566310_PREDICTED	XM_001060774.1	XM_001060774.1		498230	109498632	XM_001060774.1	RGD1566310_predicted	XP_001060774.1	ILMN_1358642	0003390450	S	671	CAGCTAGGGCTGGACGCAACATCCCCACCCTGACTTTATGCAGGAGAGTG				13q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610012C01 (predicted) (RGD1566310_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661697-S	ILMN_56431	SLC39A14_PREDICTED	XM_224332.4	XM_224332.4		306009	109501724	XM_224332.4	Slc39a14_predicted	XP_224332.4	ILMN_1356713	0002030440	S	1582	TGAGGTGTGCCAGGAGGATGAGAAGAAGGACAGCTTTTTGGTCCCCTTCG	15	-	50706299-50706348	15p11	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 14 (predicted) (Slc39a14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138615-S	ILMN_278063	STX6	NM_031665.2	NM_031665.2		60562	52138615	NM_031665.2	Stx6	NP_113853.1	ILMN_1369845	0005290333	S	2183	ATTGAAGTAGCTGTCAGGTCCAGAGCCAGCCTTTCACACTGGGGCTGCCG	13	+	70169094-70169143	13q21	Rattus norvegicus syntaxin 6 (Stx6), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of endosomes [goid 7032] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IDA]; The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles [goid 48193] [evidence IEA]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC93348	MGC93348
Rattus norvegicus	RefSeq	GI_47576980-S	ILMN_275865	OLR789	NM_001000377.1	NM_001000377.1		296042	47576980	NM_001000377.1	Olr789	NP_001000377.1	ILMN_1364777	0004920717	S	305	TTTTCATCCATGTCATTGGCGGTGTGGAGGTGGTGCTGCTCATAGGCATG	3	-	97735062-97735111	3q34	Rattus norvegicus olfactory receptor 789 (Olr789), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr789	Olr789
Rattus norvegicus	RefSeq	GI_46485399	ILMN_49687	ST3GAL6	NM_207602.2	NM_207602.2		304023	62461587	NM_207602.2	St3gal6	NP_997485.2	ILMN_1651057	0005670039	S	986	CCCAAGCACCCCACGACGGGAATTATCGCTCTCACCTTGGCGTTTCACAT	11	+	42934879-42934928	11q12	Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 6 (St3gal6), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	Siat10	Siat10
Rattus norvegicus	RefSeq	GI_62651450	ILMN_64629	KCNK13	XM_234380.3	XM_234380.3		64120	62651450	XM_234380.3	Kcnk13	XP_234380.3	ILMN_1650929	0006040332	S	370	GAGGCGTTCTGGCGGAGACTGGACACAACTGGAAAAAGGGAAGTACGCGG				6q32	PREDICTED: Rattus norvegicus potassium channel, subfamily K, member 13 (Kcnk13), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55742837-S	ILMN_282188	ALDH3B1	NM_001006998.1	NM_001006998.1		309147	55742837	NM_001006998.1	Aldh3b1	NP_001006999.1	ILMN_1366155	0000940170	S	1585	GAATGAGAAAGGCTGAGGGTGGGAATGTGGGAAGGGATGCAGTGACCTGC	1	-	206438553-206438602	1q42	Rattus norvegicus aldehyde dehydrogenase 3 family, member B1 (Aldh3b1), mRNA.		The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [goid 4030] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC95025	MGC95025
Rattus norvegicus	RefSeq	GI_34862757-S	ILMN_271726	RGD1310260_PREDICTED	XM_001077384.1	XM_001077384.1		299600	109481630	XM_001077384.1	RGD1310260_predicted	XP_001077384.1	ILMN_1374296	0006980609	S	804	CAGGGCCCCAGCATATACCATGGGCATCCGTCACTCAAAGAGGGCATCCA				7q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC48986 (predicted) (RGD1310260_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576346-S	ILMN_282012	OLR1535	NM_001000945.1	NM_001000945.1		405287	47576346	NM_001000945.1	Olr1535	NP_001000945.1	ILMN_1359884	0005340500	S	566	GTAGTGACCCTTCTCTTAATTACCTGATGCTTTTTATTTTGTCTGGCTCC	11	-	41916006-41916055	11q12	Rattus norvegicus olfactory receptor 1535 (Olr1535), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1535	Olr1535
Rattus norvegicus	RefSeq	GI_56961656-S	ILMN_299117	TMEM110	NM_198774.2	NM_198774.2		361110	56961656	NM_198774.2	Tmem110	NP_942069.1	ILMN_1360455	0004670138	S	1315	CTGCAGGCCTTGTGGACACGCGACGTGCTTGGGGTTAACAGTCGCTGGTT	16	+	6307740-6307789	16p16	Rattus norvegicus transmembrane protein 110 (Tmem110), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC108529	MGC108529
Rattus norvegicus	RefSeq	GI_62718568-S	ILMN_68888	LOC307315	XM_225779.3	XM_225779.3		307315	62718568	XM_225779.3	LOC307315	XP_225779.3	ILMN_1366961	0001050451	S	466	CAAGGACAGCCCCTCTCAAGCTTTGCCTTTTGGAGCCTGACCTGTTTCCG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC307315), mRNA.					
Rattus norvegicus	RefSeq	GI_8393705-S	ILMN_279235	LDHA	XM_001080828.1	XM_001080828.1		24533	109461968	XM_001080828.1	Ldha	XP_001080828.1	ILMN_1364112	0003140576	S	1181	CTGCAGCAGGGTTTCTATGGAGACCACGCACTTCTCATCTGAGCTGTGGT				1q22	PREDICTED: Rattus norvegicus lactate dehydrogenase A (Ldha), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways involving lactate, the anion of lactic acid [goid 6089] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP];  [goid 19642] [evidence IEA]; The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; Development, taking place during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48569] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the oxidation of lactate to produce pyruvate [goid 4457] [evidence IDA]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IEA]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence ISS]; Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+ [goid 4459] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_11067420-S	ILMN_281310	TWIST2	NM_021691.1	NM_021691.1		59327	11067420	NM_021691.1	Twist2	NP_067723.1	ILMN_1374827	0003140541	S	554	ATGCGTCCACGGCTGTGACTTTTGGCACCCGGACAACCACGGGTCCTCAT	9	+	91058234-91058283	9q36	Rattus norvegicus twist homolog 2 (Drosophila) (Twist2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]	Dermo1	Dermo1
Rattus norvegicus	RefSeq	GI_62645267	ILMN_302216	AGPS	XM_001070306.1	XM_001070306.1		84114	109468323	XM_001070306.1	Agps	XP_001070306.1	ILMN_1650991	0001050528	S	197	GCCCCAGGAGGCTCCAAGTACCAATGAGTGCAAAGCGCGGAGAGCCGCGT	3	+	58528770-58528819	3q23	PREDICTED: Rattus norvegicus alkylglycerone phosphate synthase (Agps), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence TAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence ISS]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]	Catalysis of the reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = 1-alkyl-glycerone 3-phosphate + a long-chain acid anion [goid 8609] [evidence ISS]; Catalysis of the reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = 1-alkyl-glycerone 3-phosphate + a long-chain acid anion [goid 8609] [evidence IEA]; Catalysis of the reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = 1-alkyl-glycerone 3-phosphate + a long-chain acid anion [goid 8609] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577750-S	ILMN_269900	OLR1251	NM_001000453.1	NM_001000453.1		300576	47577750	NM_001000453.1	Olr1251	NP_001000453.1	ILMN_1367729	0006840037	S	363	CCGATTTGTGGCCATTTGCAATCCACTCTTCTATAGTGTTGCCATGTCTC	8	+	40756770-40756819	8q22	Rattus norvegicus olfactory receptor 1251 (Olr1251), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr8-40765174-40766103_ORF; Olr1251	ratchr8-40765174-40766103_ORF; Olr1251
Rattus norvegicus	RefSeq	GI_16758389-S	ILMN_281055	CLIC5	NM_053603.1	NM_053603.1		94272	16758389	NM_053603.1	Clic5	NP_446055.1	ILMN_1360345	0006770520	S	1726	GAAACTGACGGCAGGAAGATCAAGGTCAGCCGCATAGCAGACTGGAGTCC	9	-	12370706-12370755	9q12	Rattus norvegicus chloride intracellular channel 5 (Clic5), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells [goid 60088] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527116-S	ILMN_291997	CAR8	NM_001009662.1	NM_001009662.1		297814	57527116	NM_001009662.1	Car8	NP_001009662.1	ILMN_1369426	0004480100	S	1021	GAGGAGTGGAAACTCTTGAGCGGCAGCTTCCTGTTAACCTTCAAGCCTGC	5	-	21951587-21951636	5q13	Rattus norvegicus carbonic anhydrase 8 (Car8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence ISS]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ca8; MGC105764	Ca8; MGC105764
Rattus norvegicus	RefSeq	Rn.22066	ILMN_291997	CAR8	NM_001009662.1	NM_001009662.1		297814	57527116	NM_001009662.1	Car8	NP_001009662.1	ILMN_1530384	0001340368	S	648	AATACAAGGGAAAATCCAAAACAATTCCATGCTTTAATCCTAACACTTTA	5	-	21996474-21996516:21997449-21997455	5q13	Rattus norvegicus carbonic anhydrase 8 (Car8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence ISS]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ca8; MGC105764	Ca8; MGC105764
Rattus norvegicus	RefSeq	GI_56799418-S	ILMN_263962	DUSP6	NM_053883.2	NM_053883.2		116663	56799418	NM_053883.2	Dusp6	NP_446335.1	ILMN_1362834	0003190390	S	2605	ATGCTCGCCCATTCAACGGGTGGGATGCGACAGGTTGTGAGGAAGGGAAA	7	+	36897344-36897393	7q13	Rattus norvegicus dual specificity phosphatase 6 (Dusp6), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence ISS]; Any process that terminates the activity of the active enzyme MAP kinase [goid 188] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]	MGC93276	MGC93276
Rattus norvegicus	RefSeq	GI_62646527-S	ILMN_290205	RGD1305809_PREDICTED	XM_001059530.1	XM_001059530.1		296469	109471487	XM_001059530.1	RGD1305809_predicted	XP_001059530.1	ILMN_1370128	0001340341	S	614	GGTGGATTTGACCCATTCCCCCTGTACCATGTCAATGAGAAGCCGTCCGG				3q43	PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 58 (predicted), transcript variant 2 (RGD1305809_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664640-S	ILMN_52320	DYM_PREDICTED	XM_214529.4	XM_214529.4		291433	109506755	XM_214529.4	Dym_predicted	XP_214529.4	ILMN_1361806	0001690050	S	2220	TGGCCTGTACTGGAACCCACAGGACATCCAACTGTTTGCCATGGACTCAG	18	+	72187971-72188020	18q12.3	PREDICTED: Rattus norvegicus dymeclin (predicted) (Dym_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34879075-S	ILMN_285136	ADAM32	XM_001072010.1	XM_001072010.1		361170	109504394	XM_001072010.1	Adam32	XP_001072010.1	ILMN_1362600	0006130487	S	2142	GACAGCAGTCGTCCTAGGCACAGGGTGGAAAGGCTTGAAAAAGTGTCGCT				16q12.4	PREDICTED: Rattus norvegicus a disintegrin and metalloprotease domain 32 (Adam32), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648727-S	ILMN_60802	RGD1562449_PREDICTED	XM_575784.2	XM_575784.2		366333	109474765	XM_575784.2	RGD1562449_predicted	XP_575784.2	ILMN_1359931	0003450722	S	1622	CCCCAGACACGGATTTCACCGGACATTCTCTCTTTGACTCTGACGTGGAC	5	+	36737442-36737491	5q21	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC2817 (predicted) (RGD1562449_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656077-S	ILMN_281083	RGD1566120_PREDICTED	XM_573090.1	XM_573090.1		497904	62656077	XM_573090.1	RGD1566120_predicted	XP_573090.1	ILMN_1358776	0006770132	S	501	CACCGAAGACAGTGGGAGTAGCTTCCCATCACCAGAACTGTTCAGAGGGG	10	+	39800888-39800937	10q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1566120_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577550-S	ILMN_286201	OLR510	NM_001000312.1	NM_001000312.1		295765	47577550	NM_001000312.1	Olr510	NP_001000312.1	ILMN_1369692	0000870253	S	471	CACTGTGGCCACTTTCAGACTCTCATTTTGTGGATCCAATGAAGTTAGTC	3	-	69749043-69749092	3q24	Rattus norvegicus olfactory receptor 510 (Olr510), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr510; ratchr3-69645935-69645003_ORF	Olr510; ratchr3-69645935-69645003_ORF
Rattus norvegicus	RefSeq	GI_62649427	ILMN_51067	LOC500521	XM_575882.1	XM_575882.1		500521	62649427	XM_575882.1	LOC500521	XP_575882.1	ILMN_1649827	0000450446	S	459	GGAATGAATGGTATTGCCTGCCTCAGCATAAACACCAGGAGCCAAGCACC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9530098N22 gene (LOC500521), mRNA.					
Rattus norvegicus	RefSeq	GI_16758823-S	ILMN_281665	MARK1	NM_053947.1	NM_053947.1		117016	16758823	NM_053947.1	Mark1	NP_446399.1	ILMN_1373880	0002650438	S	2381	AGACGCTCGGCAGGACAGCCTCGTACAGTGGGAGATGGAGGTCTGCAAGT	13	-	100905729-100905778	13q26	Rattus norvegicus MAP/microtubule affinity-regulating kinase 1 (Mark1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence NAS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12831208-S	ILMN_297725	MYO1C	NM_023092.1	NM_023092.1		65261	12831208	NM_023092.1	Myo1c	NP_075580.2	ILMN_1372126	0001850035	S	3738	ACAGGACAAGGAATGTAGCTGAAAGACTGACTGGGCTGGCTGAGGCCCCC	10	+	63006924-63006973	10q24	Rattus norvegicus myosin IC (Myo1c), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IEA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IEA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IEA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence IEA]; An actin-based protrusion from the apical surface of auditory and vestibular hair cells. Bundles of stereocilia act as mechanosensory organelles [goid 32420] [evidence ISS]; A myosin complex containing a class I myosin heavy chain and associated light chains; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments; myosin I complexes are involved in diverse processes related to membrane traffic and cell movement [goid 45160] [evidence IEA]; A myosin complex containing a class I myosin heavy chain and associated light chains; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments; myosin I complexes are involved in diverse processes related to membrane traffic and cell movement [goid 45160] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Myr2	Myr2
Rattus norvegicus	RefSeq	GI_62656178-S	ILMN_293941	TOP3A_PREDICTED	XM_001077625.1	XM_001077625.1		303194	109490881	XM_001077625.1	Top3a_predicted	XP_001077625.1	ILMN_1373761	0000130110	S	978	CAAGCCAAAGAGCAAGTGGCGGCCTCAAGCGTTGGACACTGTGGAGCTAG					PREDICTED: Rattus norvegicus topoisomerase (DNA) III alpha (predicted) (Top3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656176-S	ILMN_293941	TOP3A_PREDICTED	XM_001077625.1	XM_001077625.1		303194	109490881	XM_001077625.1	Top3a_predicted	XP_001077625.1	ILMN_1349592	0005860717	S	2473	TCAGCATGTAAGCAGAGCTGACCTCAGTGACCTTCCAAACCCGGGCCGTG					PREDICTED: Rattus norvegicus topoisomerase (DNA) III alpha (predicted) (Top3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650504-S	ILMN_277996	E2F6	XM_001069501.1	XM_001069501.1		313978	109479089	XM_001069501.1	E2f6	XP_001069501.1	ILMN_1369892	0001230397	S	366	CCACATTCGGTGGATAGGATCTGACCTGAACAACTTTGGGGCAGCACCCC				6q15	PREDICTED: Rattus norvegicus E2F transcription factor 6, transcript variant 2 (E2f6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]	Any process that regulates transcription such that the target genes are transcribed during the G1/S phase of the mitotic cell cycle [goid 83] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078954-S	ILMN_287542	MAGIX	NM_001014109.1	NM_001014109.1		317379	62078954	NM_001014109.1	Magix	NP_001014131.1	ILMN_1366053	0006370131	S	1265	ACTGCACAGTGGACTGGTCCCCACCCCTTCAAGACGCCAGTAGTATGGCC	X	+	26871753-26871802	Xq13	Rattus norvegicus MAGI family member, X-linked (Magix), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649752-S	ILMN_68540	LOC497807	XM_216338.2	XM_216338.2		497807	62649752	XM_216338.2	LOC497807	XP_216338.2	ILMN_1360966	0001990017	S	364	GATGTTTGACCTGTGTGCTACTAACAGATAATAAATTATCACCAGGATAC					PREDICTED: Rattus norvegicus similar to ATPase inhibitor (LOC497807), mRNA.					
Rattus norvegicus	RefSeq	GI_6981645-S	ILMN_299881	TGFA	NM_012671.1	NM_012671.1		24827	6981645	NM_012671.1	Tgfa	NP_036803.1	ILMN_1349238	0000110121	S	3884	GTGCGCACGTACACACACCAAACTGGAAAGCGACCCCTCTCCATAGTGTG	4	+	120437436-120437485	4q34	Rattus norvegicus transforming growth factor alpha (Tgfa), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IMP]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor activity [goid 45741] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor activity [goid 45741] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 48523] [evidence IDA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within the cytosol of a cell or between the cytosol and its surroundings [goid 51480] [evidence IMP]	Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence ISS]; Interacting selectively with a glycoprotein, a protein that contains covalently bound glycose (monosaccharide) residues. These also include proteoglycans [goid 1948] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence ISS]; Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence TAS];  [goid 5155] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]	RATTGFAA; TGFAA	RATTGFAA; TGFAA
Rattus norvegicus	RefSeq	GI_8393632-S	ILMN_301613	ISL1	NM_017339.1	NM_017339.1		64444	8393632	NM_017339.1	Isl1	NP_059035.1	ILMN_1371866	0004920440	S	769	CTAATATCCAGGGGATGACAGGAACTCCCATGGTGGCTGCTAGTCCGGAG	2	-	48052288-48052336:48053562-48053562	2q15	Rattus norvegicus ISL1 transcription factor, LIM/homeodomain 1 (Isl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whereby neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21522] [evidence ISS]; The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of visceral motor neurons. Visceral motor neurons innervate glandular targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21524] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell [goid 48762] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Isl-1; isl-1=homeobox	Isl-1; isl-1=homeobox
Rattus norvegicus	RefSeq	GI_62655355-S	ILMN_65075	COPS7B_PREDICTED	XM_343614.3	XM_343614.3		363273	109486316	XM_343614.3	Cops7b_predicted	XP_343615.2	ILMN_1358186	0003840152	S	696	GCATGAATGGTGTGACGGCTGTGAGGCAGTTCTCCTGGGCATTGAGCAGC	9	+	85372217-85372225:85373816-85373856	9q35	PREDICTED: Rattus norvegicus COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana) (predicted) (Cops7b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654917-S	ILMN_62506	ANKRD23_PREDICTED	XM_237094.4	XM_237094.4		316330	109485947	XM_237094.4	Ankrd23_predicted	XP_237094.2	ILMN_1350070	0001850546	S	1322	CAGGCACTGGAGCAGGCACTTCTAACCTTTGGGCAGTGTTTCCCCTGGGA	9	-	35473629-35473678	9q21	PREDICTED: Rattus norvegicus ankyrin repeat domain 23 (predicted) (Ankrd23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638570-S	ILMN_56092	RGD1565233_PREDICTED	XM_217877.4	XM_217877.4		292316	109457788	XM_217877.4	RGD1565233_predicted	XP_217877.4	ILMN_1351810	0005700053	S	38	GTACACTGACTGTGTGGCATGAGGAATGCTGCTATGCACTGACTGTGTGG	1	-	48270989-48271038	1q11	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1565233_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_60097951-S	ILMN_62869	PTGR1	NM_138863.2	NM_138863.2		192227	60097951	NM_138863.2	Ptgr1	NP_620218.1	ILMN_1349635	0006590041	S	837	GAGGGGTTCATCGTTACTCGGTGGCAAGGAGAAGTCCGCCAGAAGGCTCT	5	-	77013338-77013387	5q24	Rattus norvegicus prostaglandin reductase 1 (Ptgr1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: n-alkanal + NAD(P)+ = alk-2-enal + NAD(P)H + H+ [goid 32440] [evidence IEA]; Catalysis of the reaction: (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprostanoate + NAD(P)+ = (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprosta-13-enoate + NAD(P)H + H+ [goid 47522] [evidence IEA]	Dig1	Dig1
Rattus norvegicus	RefSeq	GI_9910501-S	ILMN_296634	ACPP	NM_020072.1	NM_020072.1		56780	9910501	NM_020072.1	Acpp	NP_064457.1	ILMN_1354676	0005390170	S	1416	GGGCAAAGGACCTGATTCACCTGACAACAACGCTCACCTGTTCCCCTGCC	8	-	109363387-109363436	8q32	Rattus norvegicus acid phosphatase, prostate (Acpp), transcript variant 2, mRNA.	A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex [goid 31985] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IDA]	Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium [goid 33265] [evidence IDA]	Acpp11; Ppal; RNACPP11; pap	Acpp11; Ppal; RNACPP11; pap
Rattus norvegicus	RefSeq	GI_57164014-S	ILMN_275572	IER2	NM_001009541.1	NM_001009541.1		494344	57164014	NM_001009541.1	Ier2	NP_001009541.1	ILMN_1352529	0000780673	S	1206	GCTGCTGTGGGCGAGCCGGCCTTCGGCTGAGATCCAGAACTGAACAAATC	19	+	25160481-25160530	19q11	Rattus norvegicus immediate early response 2 (Ier2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			MGC72578	MGC72578
Rattus norvegicus	RefSeq	GI_62643801-S	ILMN_297149	RGD1565891_PREDICTED	XR_008980.1	XR_008980.1		310648	109467033	XR_008980.1	RGD1565891_predicted		ILMN_1366169	0004230440	S	1029	GGTATAACATTGAATACGGCTACAGCAACAGGGTGGTGGATCTCACGTCC				2q34	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1565891_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666434-S	ILMN_52921	LOC298353	XM_233326.3	XM_233326.3		298353	62666434	XM_233326.3	LOC298353	XP_233326.3	ILMN_1369312	0003060138	S	3851	GAAGGACATGCAGAATCCCCAAGAAAAGCCAGCCTTCATCCAGGCAGAGC				Xq11	PREDICTED: Rattus norvegicus similar to XRnf12C (LOC298353), mRNA.					
Rattus norvegicus	RefSeq	GI_62650706-S	ILMN_50190	BRMS1L_PREDICTED	XM_216712.4	XM_216712.4		299053	109478182	XM_216712.4	Brms1l_predicted	XP_216712.2	ILMN_1374577	0004050082	S	1188	GTGTTACCAAGTGTAATGTGCCATGGGAGCCAGGAAGTGTATTCAGCAGC	6	+	76210091-76210140	6q23	PREDICTED: Rattus norvegicus breast cancer metastasis-suppressor 1-like (predicted) (Brms1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665277-S	ILMN_271175	RGD1309731_PREDICTED	XM_001077379.1	XM_001077379.1		307845	109508887	XM_001077379.1	RGD1309731_predicted	XP_001077379.1	ILMN_1350292	0003440138	S	2001	GCTAGCCGCTGAGGACGATGAAGTGCAGCAACTGGCTGCCAACAGGCACA				19q12	PREDICTED: Rattus norvegicus similar to actin monomer-binding protein (predicted) (RGD1309731_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648963-S	ILMN_302208	ANKS6	NM_001015028.2	NM_001015028.2		362515	83025051	NM_001015028.2	Anks6	NP_001015028.2	ILMN_1369047	0001240520	S	3358	ATGTGAGGAAGCTCAATGCTGTCCCTAATGAAGCTGGTGCCCGAGTCTGC	5	-	63634499-63634548	5q22	Rattus norvegicus ankyrin repeat and sterile alpha motif domain containing 6 (Anks6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			MGC109646; Pkdr1	MGC109646; Pkdr1
Rattus norvegicus	RefSeq	GI_16758643-S	ILMN_284667	TXN1	NM_053800.2	NM_053800.2		116484	42476285	NM_053800.2	Txn1	NP_446252.1	ILMN_2038784	0003060242	S	86	ATGGTGAAGCTGATCGAGAGCAAGGAAGCTTTTCAGGAGGCCCTGGCCGC	5	-	75929335-75929361:75933572-75933594	5q24	Rattus norvegicus thioredoxin 1 (Txn1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Txn	Txn
Rattus norvegicus	RefSeq	GI_42476285-S	ILMN_284667	TXN1	NM_053800.2	NM_053800.2		116484	42476285	NM_053800.2	Txn1	NP_446252.1	ILMN_1371958	0006200369	S	331	GGGTCAAAAGGTTGGGGAGTTCTCTGGTGCTAACAAGGAAAAGCTCGAAG	5	-	75921399-75921439:75922721-75922729	5q24	Rattus norvegicus thioredoxin 1 (Txn1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Txn	Txn
Rattus norvegicus	RefSeq	GI_16758643-S	ILMN_284667	TXN1	NM_053800.2	NM_053800.2		116484	42476285	NM_053800.2	Txn1	NP_446252.1	ILMN_2038783	0007000603	S	183	CTGCCAGGATGTTGCTGCAGACTGTGAAGTCAAATGCATGCCGACCTTCC	5	-	75928375-75928393:75929257-75929287	5q24	Rattus norvegicus thioredoxin 1 (Txn1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Txn	Txn
Rattus norvegicus	RefSeq	GI_62639732-S	ILMN_63799	PPFIA3	XM_341856.2	XM_341856.2		140591	62639732	XM_341856.2	Ppfia3	XP_341857.2	ILMN_1368302	0005290465	S	3657	AAACTGCAGCCTGAAGTCGCGGGGCCCAAGTCTTCCTTTTCCGTCCGCTA				1q22	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 (Ppfia3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IMP]; A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity [goid 48172] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_6981579-S	ILMN_288356	SPP1	NM_012881.1	NM_012881.1		25353	6981579	NM_012881.1	Spp1	NP_037013.1	ILMN_1352642	0007000324	S	895	CAGCCTGGAACATCAGAGCCACGAGTTTCACAGCCATGAGGACAAGCTAG				14p22	Rattus norvegicus secreted phosphoprotein 1 (Spp1), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, the mesodermal cell that gives rise to bone [goid 1649] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of collateral sprouting of an intact axon as a result of injury to an axon [goid 48685] [evidence IEP]		OSP	OSP
Rattus norvegicus	RefSeq	GI_62649327-S	ILMN_68983	RGD1559493_PREDICTED	XM_575877.2	XM_575877.2		500516	109475216	XM_575877.2	RGD1559493_predicted	XP_575877.2	ILMN_1371016	0001850068	S	1048	CCCAGTCGGGGTAGGCCGCTATCTCAACACCACACTGATGGAGAAAATAG	5	-	127686469-127686518	5q34	PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC58608 (predicted) (RGD1559493_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645883-S	ILMN_272952	RGD1565616_PREDICTED	XM_001081185.1	XM_001081185.1		499891	109470837	XM_001081185.1	RGD1565616_predicted	XP_001081185.1	ILMN_1358371	0000060050	S	3526	GGAAGAGGCCAATCGGGAGATCGAGAGGTACAACAGAGAGCTGGAGCAGC				3q36	PREDICTED: Rattus norvegicus RGD1565616 (predicted) (RGD1565616_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650355-S	ILMN_55370	SPAST_PREDICTED	XM_343018.3	XM_343018.3		362700	109477950	XM_343018.3	Spast_predicted	XP_343019.3	ILMN_1351249	0006200020	S	1794	GGATGCAGCACTGGGTCCTATCCGAGAACTGAAACCAGAGCAGGTGAAGA	6	-	20994295-20994319:21001319-21001343	6q12	PREDICTED: Rattus norvegicus spastin (predicted) (Spast_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666760-S	ILMN_277088	RGD1560666_PREDICTED	XM_001069576.1	XM_001069576.1		317439	109511718	XM_001069576.1	RGD1560666_predicted	XP_001069576.1	ILMN_1352052	0003290064	S	4281	GGTGCTTTTTTGTGTGTGGAGAGAAGGGCATGTGGGTAACATAGCTTGCC				Xq21	PREDICTED: Rattus norvegicus similar to KIAA1280 protein (predicted) (RGD1560666_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027399-A	ILMN_62870	GUCY1A2	XM_579478.2	XM_579478.2		66012	109483036	XM_579478.2	Gucy1a2	XP_579478.1	ILMN_1376307	0004010184	S	859	ATCCCTGGGGTCTGCTATTTCCTGGAGTTAAGGACTGGCCCAAAGCCACC	8	+	262369-262418	8q11	PREDICTED: Rattus norvegicus guanylate cyclase 1, soluble, alpha 2 (Gucy1a2), mRNA.		The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue [goid 9190] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP [goid 30828] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IDA]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62654960-S	ILMN_262691	MAP4K4_PREDICTED	XM_001058712.1	XM_001058712.1		301363	109486998	XM_001058712.1	Map4k4_predicted	XP_001058712.1	ILMN_1367849	0006590280	S	3981	CGGCAGCAGCCAGGTCTACTTCATGACCTTAGGCAGGACTTCCCTTCTGA				9q21	PREDICTED: Rattus norvegicus mitogen-activated protein kinase kinase kinase kinase 4 (predicted), transcript variant 6 (Map4k4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302134-S	ILMN_289669	FOXE1	NM_138909.1	NM_138909.1		192274	20302134	NM_138909.1	Foxe1	NP_620264.1	ILMN_1360819	0007040053	S	2268	GGGTCGCAATCGTAACTGAATTCTCGGTGTGATCCAGCCCTAACACCTGA	5	+	62907477-62907526	5q22	Rattus norvegicus forkhead box E1 (thyroid transcription factor 2) (Foxe1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence ISS]; The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence ISS]; The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone [goid 30878] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence ISS]; Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 48562] [evidence IEA]; The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes [goid 60022] [evidence ISS]; The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes [goid 60022] [evidence IEA]; The biological process whose specific outcome is the progression of the soft palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate [goid 60023] [evidence ISS]; The biological process whose specific outcome is the progression of the soft palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate [goid 60023] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IMP]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Ttf-2	Ttf-2
Rattus norvegicus	RefSeq	GI_62653833-S	ILMN_276532	RGD1561651_PREDICTED	XM_001076726.1	XM_001076726.1		363412	109484901	XM_001076726.1	RGD1561651_predicted	XP_001076726.1	ILMN_1363634	0001230563	S	799	CTTTGGGAACTAAGCCGGAGCCAGAGGAAGGGGAGAATGAGTGTCGGCCA				8q24	PREDICTED: Rattus norvegicus similar to zinc finger protein 609 (predicted) (RGD1561651_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656304-S	ILMN_265566	JMJD3_PREDICTED	XM_001079385.1	XM_001079385.1		363630	109491100	XM_001079385.1	Jmjd3_predicted	XP_001079385.1	ILMN_1368412	0001400008	S	5044	ACAGGCCTATGATGCCTTCACACTGGCTCCTGCCAGCACGTCGCGATGAG				10q24	PREDICTED: Rattus norvegicus jumonji domain containing 3 (predicted) (Jmjd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25742726-S	ILMN_291123	THRB	NM_012672.1	NM_012672.1		24831	25742726	NM_012672.1	Thrb	NP_036804.1	ILMN_1359879	0004760301	S	4322	CAGTCAAGGAGAACACGCTCATCCTGCTGGGGCACTCACTGACAAATGGT				15p16	Rattus norvegicus thyroid hormone receptor beta (Thrb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids [goid 19216] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation [goid 32332] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of bone formation [goid 45778] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence TAS]; Combining with thyroid hormone to initiate a change in cell activity [goid 4887] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with thyroid hormone to initiate a change in cell activity [goid 4887] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	TRbeta; T3rec; RATT3REC; C-erba-beta; Nr1a2; ERBA2	TRbeta; T3rec; RATT3REC; C-erba-beta; Nr1a2; ERBA2
Rattus norvegicus	RefSeq	GI_34881682-S	ILMN_269960	RGD1559581_PREDICTED	XM_228661.2	XM_228661.2		317308	34881682	XM_228661.2	RGD1559581_predicted	XP_228661.2	ILMN_1362528	0005420672	S	1860	TACCGGTGCTGGAACTGCCGCTGTGGACAACACATCCTTGACCACGTTCC	X	+	140993747-140993796	Xq36	PREDICTED: Rattus norvegicus similar to ZFP36L3 (predicted) (RGD1559581_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644213-S	ILMN_295270	RGD1562088_PREDICTED	XR_008830.1	XR_008830.1		365907	109467469	XR_008830.1	RGD1562088_predicted		ILMN_1354645	0001990725	S	353	GAAGTGGCCAAAGTCACTGATGGAGAGAAGGTGTGTGTTCACTTGGCTCC				2q41	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (predicted) (RGD1562088_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645172-S	ILMN_68028	LOC499805	XM_575145.1	XM_575145.1		499805	62645172	XM_575145.1	LOC499805	XP_575145.1	ILMN_1375171	0000730673	S	1286	CCAGTCAGTGGGAAGGAGTGAGGAATGCCAAACTAGCCGCCATCTTCGCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932414N04 (LOC499805), mRNA.					
Rattus norvegicus	RefSeq	GI_62639315-S	ILMN_49173	LOC499119	XM_574413.1	XM_574413.1		499119	62639315	XM_574413.1	LOC499119	XP_574413.1	ILMN_1349573	0003780239	S	3588	TGTCAGCTTCCCAGAGACACCTTTTGCAGCATCACCAGCAGGGGCCGACA					PREDICTED: Rattus norvegicus similar to Signal-induced proliferation-associated 1 like protein 3 (LOC499119), mRNA.					
Rattus norvegicus	RefSeq	GI_62650769-S	ILMN_270651	KLHDC1_PREDICTED	XM_001080363.1	XM_001080363.1		314190	109479471	XM_001080363.1	Klhdc1_predicted	XP_001080363.1	ILMN_1365971	0006860398	S	1893	CAGGCAAGCTCATTCAGCTACTTCAGGCTTTGCCCTGCTAGGACCACGTG				6q24	PREDICTED: Rattus norvegicus kelch domain containing 1 (predicted) (Klhdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19924210-S	ILMN_297269	NFASC	NM_053909.1	NM_053909.1		116690	19924210	NM_053909.1	Nfasc	NP_446361.1	ILMN_1368040	0003520372	S	3681	GACCTGCCACCAAGCCACAACACCTTCAGGGACAAGGGTACAACATGGGG	13	-	45456211-45456260	13q13	Rattus norvegicus neurofascin (Nfasc), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661778-S	ILMN_60833	LOC498552	XM_573828.1	XM_573828.1		498552	62661778	XM_573828.1	LOC498552	XP_573828.1	ILMN_2038873	0007210070	S	1782	GAGCCCAGGTTCGGACGGGTTTAGTGCAGAATTCTATCAGACCTTCATAG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC498552), mRNA.					
Rattus norvegicus	RefSeq	GI_62650046-S	ILMN_60805	CLSTN1	XM_243040.4	XM_243040.4		313717	109475854	XM_243040.4	Clstn1	XP_243040.4	ILMN_1361741	0005910070	S	3611	AGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCAGTGAGCGGACTTGT	5	+	166733833-166733882	5q36	PREDICTED: Rattus norvegicus calsyntenin 1 (Clstn1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642506-S	ILMN_67655	DCLRE1A_PREDICTED	XM_214730.4	XM_214730.4		292127	109460274	XM_214730.4	Dclre1a_predicted	XP_214730.2	ILMN_1372971	0004570047	S	3205	TCATACCCACCGTAAACGTCGGCACCTTTCAGTCCAGGAACACGATGGAG	1	-	262822544-262822593	1q55	PREDICTED: Rattus norvegicus DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) (predicted) (Dclre1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27659743-S	ILMN_67655	DCLRE1A_PREDICTED	XM_214730.4	XM_214730.4		292127	109460274	XM_214730.4	Dclre1a_predicted	XP_214730.2	ILMN_2039608	0006110762	S	3269	GTGGAGATTGGAAGCCGGATACTGATGCCGTCACAGACGTCAGCTGGGCT	1	-	262822480-262822505:262822506-262822529	1q55	PREDICTED: Rattus norvegicus DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) (predicted) (Dclre1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758919-S	ILMN_296803	CAND1	NM_054004.1	NM_054004.1		117152	16758919	NM_054004.1	Cand1	NP_446456.1	ILMN_1375217	0006220647	S	4090	GCACTGAACCGACAAGTTGACCATAGACACGGGAGAGAAGTGTCTAGAGC	7	-	58461448-58461497	7q22	Rattus norvegicus cullin-associated and neddylation-dissociated 1 (Cand1), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence ISS]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcriptional preinitiation complex assembly [goid 45899] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with TATA-binding protein (TBP), a component of various transcription factors [goid 17025] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tip120; Tip120A	Tip120; Tip120A
Rattus norvegicus	RefSeq	GI_62663009-S	ILMN_65188	LOC502099	XM_577539.1	XM_577539.1		502099	62663009	XM_577539.1	LOC502099	XP_577539.1	ILMN_1367369	0002370273	S	303	GCTGACGGAGAAAAATCTCCAGTTGAGCAGCACTCTGTGCGTCTTCGTGA					PREDICTED: Rattus norvegicus similar to GTP-binding protein RAB20 (LOC502099), mRNA.					
Rattus norvegicus	RefSeq	GI_62652143-S	ILMN_54280	LOC299701	XM_235015.3	XM_235015.3		299701	62652143	XM_235015.3	LOC299701	XP_235015.3	ILMN_1373414	0006130528	S	3139	GCCAGGATGGCTTCCAAGGTTCCATGTGTCAGTTCTGCTCCGACCCCAAC				7q13	PREDICTED: Rattus norvegicus similar to stabilin-2 (LOC299701), mRNA.					
Rattus norvegicus	RefSeq	GI_34933456-S	ILMN_269166	PRAF2_PREDICTED	XM_346274.1	XM_346274.1		367743	34933456	XM_346274.1	Praf2_predicted	XP_346275.1	ILMN_1369132	0006450008	S	272	CAGCGCCTGTGCTTTTGATCCTGCTGCATGCTTCACTGCGCCTGAGAAAC	X	-	26813195-26813230:26813526-26813539	Xq13	PREDICTED: Rattus norvegicus PRA1 domain family 2 (predicted) (Praf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27686408-S	ILMN_290286	HIST1H2BP_PREDICTED	XM_001061682.1	XM_001061682.1		306969	109505970	XM_001061682.1	Hist1h2bp_predicted	XP_001061682.1	ILMN_1349454	0006220603	S	165	TTAAGCAAGTGCATCCGGACACGGGCATCTCTTCCAAGGCCATGGGCATA				17q11	PREDICTED: Rattus norvegicus histone 1, H2bp (predicted) (Hist1h2bp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47777733-S	ILMN_296124	OLR1537_PREDICTED	XM_001058179.1	XM_001058179.1		288198	109494201	XM_001058179.1	Olr1537_predicted	XP_001058179.1	ILMN_1371833	0003170368	S	36	TGTTCTCACGGGACTCACTGAGAGTCCCGAGCTGCAGATTCCACTCTTCC				11q12	PREDICTED: Rattus norvegicus olfactory receptor 1537 (predicted) (Olr1537_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652416-S	ILMN_274376	RAD21	NM_001025701.1	NM_001025701.1		314949	71043765	NM_001025701.1	Rad21	NP_001020872.1	ILMN_1373246	0004200538	S	3333	GCTCTTGCGGTTTCTTTTCAGTAAGACGTGCCTGGAAACCATGGATCCCC	7	-	88267822-88267871	7q31	Rattus norvegicus RAD21 homolog (S. pombe) (Rad21), mRNA.	A chromosome found in the nucleus of a eukaryotic cell [goid 228] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641192-I	ILMN_51137	TMC5_PREDICTED	XM_341913.2	XM_341913.2		365360	62641192	XM_341913.2	Tmc5_predicted	XP_341914.2	ILMN_1376083	0002100100	S	2076	TTCTCTTGGTCACGAGCCCTTGAAGGCACCGGGAATGGGGATGTGGGAGT				1q35	PREDICTED: Rattus norvegicus transmembrane channel-like gene family 5 (predicted) (Tmc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557256-S	ILMN_262973	SDCCAG10	NM_001013199.1	NM_001013199.1		361887	61557256	NM_001013199.1	Sdccag10	NP_001013217.1	ILMN_1349752	0002810341	S	1496	GCCTGCCAGGAATGTCGTGTGGGAAATGTGTCAGGGCCTGTGTTCTGGTG	2	-	35567477-35567526	2q13	Rattus norvegicus serologically defined colon cancer antigen 10 (Sdccag10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643440-S	ILMN_262626	FOXO1A	XM_001056726.1	XM_001056726.1		84482	109466634	XM_001056726.1	Foxo1a	XP_001056726.1	ILMN_1357044	0002940315	S	3703	CTCTCGGCTTGTGTCCAGGATGGAGGTGGCATTATGGCTGTGTCCTGAAG				2q26	PREDICTED: Rattus norvegicus forkhead box O1A (Foxo1a), mRNA.					
Rattus norvegicus	RefSeq	GI_16758579-S	ILMN_296319	AURKB	NM_053749.1	NM_053749.1		114592	16758579	NM_053749.1	Aurkb	NP_446201.1	ILMN_1358998	0005550239	S	1452	GGCTTGGCAGTTAAAAGCACTGGCTACTCTTCCCAAGAACCAGGAGTTCA	10	+	55804008-55804057	10q24	Rattus norvegicus aurora kinase B (Aurkb), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IDA]; A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis [goid 30496] [evidence IDA]	A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process by which a methyl group is covalently attached to a molecule [goid 32259] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IMP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Stk12; Aim1	Stk12; Aim1
Rattus norvegicus	RefSeq	GI_62650794-S	ILMN_54814	RGD1564008_PREDICTED	XM_576044.2	XM_576044.2		500666	109478258	XM_576044.2	RGD1564008_predicted	XP_576044.1	ILMN_1362391	0004610044	S	3395	CCAAGCCCAGAATTGCTCTCACCTAAGCACTGGCCTAAACAGTAGTGCAG	6	+	93412449-93412498	6q24	PREDICTED: Rattus norvegicus similar to dapper 1 (predicted) (RGD1564008_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662144-S	ILMN_282393	RGD1306164_PREDICTED	XM_001056656.1	XM_001056656.1		361104	109503675	XM_001056656.1	RGD1306164_predicted	XP_001056656.1	ILMN_1373340	0000450139	S	591	CAACGTGTACCCACACAAGCAGAGACCCCTGGAGAAACCTGATGGCCTGG				16p16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ90798 (predicted) (RGD1306164_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649046-S	ILMN_268437	SLC31A2	NM_001033693.1	NM_001033693.1		298091	76096321	NM_001033693.1	Slc31a2	NP_001028865.1	ILMN_1350629	0001770373	S	1326	ACCTGGATTTTCCTTGGTGTGGTCCTGGGCTCGGCTGTGGGCTACTACCT	5	+	79291138-79291187	5q24	Rattus norvegicus solute carrier family 31 (copper transporters), member 2 (Slc31a2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence IEA]	Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IEA]	MGC124776	MGC124776
Rattus norvegicus	RefSeq	GI_31745143-S	ILMN_291382	CDC91L1	NM_181637.1	NM_181637.1		353304	31745143	NM_181637.1	Cdc91l1	NP_853668.1	ILMN_1370471	0003440333	S	1479	GGGAGAAGCTAGGAGCACCCCACTTGGACCCCCACTTTGTGACTGTGCAT	3	-	145760765-145760814	3q42	Rattus norvegicus CDC91 cell division cycle 91-like 1 (S. cerevisiae) (Cdc91l1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor [goid 42765] [evidence IEA]	Any process that modulates the frequency, rate or extent of the JAK-STAT signaling pathway [goid 46425] [evidence IEA]		Pigu; sakura	Pigu; sakura
Rattus norvegicus	RefSeq	GI_61556800-S	ILMN_268125	POLD2	NM_001013050.1	NM_001013050.1		289758	61556800	NM_001013050.1	Pold2	NP_001013068.1	ILMN_1351772	0000540471	S	1260	TTGCGGAATGCCCTCACGTCTACTTCTGCGGCAACACTCCCAGCTTTGGC	14	-	86536253-86536302	14q21	Rattus norvegicus polymerase (DNA directed), delta 2, regulatory subunit (Pold2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19924028-S	ILMN_293303	ADRA2C	NM_138506.1	NM_138506.1		24175	19924028	NM_138506.1	Adra2c	NP_612515.1	ILMN_1364534	0006420040	S	1517	ACTCGGGTACATAGGGGGACCAACCAGTGTGGCTTCTCCAGAGTTCCAGG	14	-	81108044-81108093	14q21	Rattus norvegicus adrenergic, alpha-2C-, receptor (Adra2c), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS];  [goid 4935] [evidence IEA];  [goid 4938] [evidence IMP];  [goid 4938] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651917-S	ILMN_66038	LOC366790	XM_345769.2	XM_345769.2		366790	62651917	XM_345769.2	LOC366790	XP_345770.2	ILMN_1369192	0000070079	S	369	GCCACGGGCACAGGTGATCGACCCGCACTTGTTTCCAAACCTCTTCCTTT				7q11	PREDICTED: Rattus norvegicus similar to PYM protein (predicted) (LOC366790), mRNA.					
Rattus norvegicus	RefSeq	GI_62659923-S	ILMN_300087	RGD1560269_PREDICTED	XM_001065756.1	XM_001065756.1		289369	109499223	XM_001065756.1	RGD1560269_predicted	XP_001065756.1	ILMN_1369513	0003440132	S	15334	GTACTGCGGATTCCAAGTCAAAGCCAACTGAGCCACGCCTACTCCCAGGG				13q26	PREDICTED: Rattus norvegicus similar to usherin isoform B (predicted) (RGD1560269_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959221-S	ILMN_270983	SCN9A	NM_133289.1	NM_133289.1		78956	18959221	NM_133289.1	Scn9a	NP_579823.1	ILMN_1360284	0004050019	S	9175	GGATGCTGTTTACCAAACCCATAGACCCATGAATGCTCCAAACGTCTGAG	3	-	48438799-48438848	3q21	Rattus norvegicus sodium channel, voltage-gated, type IX, alpha (Scn9a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; Any process involved in the generation of rhythmic, synchronous excitatory synaptic inputs in a neural circuit [goid 43179] [evidence NAS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence IEA]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IDA]	PN1	PN1
Rattus norvegicus	RefSeq	GI_47577958-S	ILMN_282970	OLR1117	NM_001000884.1	NM_001000884.1		405183	47577958	NM_001000884.1	Olr1117	NP_001000884.1	ILMN_1352261	0000070435	S	224	CAGTCACAATCCCAAAAATGCTGGTGAATATCCAAGCCCATGACGACAGC	8	-	16163522-16163571	8q12	Rattus norvegicus olfactory receptor 1117 (Olr1117), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1117	Olr1117
Rattus norvegicus	RefSeq	GI_62650449-S	ILMN_279936	KBTBD9_PREDICTED	XM_001071030.1	XM_001071030.1		298867	109479112	XM_001071030.1	Kbtbd9_predicted	XP_001071030.1	ILMN_1371619	0001660471	S	4910	TGGCGTGCATCTGCCTCCAAGGGAGGTGTTAGTGGTCAACAAGACTCCGC				6q14	PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain containing 9 (predicted) (Kbtbd9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576252-S	ILMN_280255	OLR1309	NM_001000466.1	NM_001000466.1		300610	47576252	NM_001000466.1	Olr1309	NP_001000466.1	ILMN_1356314	0002690671	S	747	CTATGGACCAGTCATTGTCATCTACCTGCAGCCCAATCCCAGCCCATTAC	8	+	42488906-42488955	8q22	Rattus norvegicus olfactory receptor 1309 (Olr1309), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1309	Olr1309
Rattus norvegicus	RefSeq	GI_62660288-S	ILMN_262561	LOC498339	XM_001072942.1	XM_001072942.1		498339	109500407	XM_001072942.1	LOC498339	XP_001072942.1	ILMN_1367618	0002190369	S	250	CCAAAGAACCATCTTCCTGCTAGTAACCGCCAGTCATGCATCGTCAGCCC				14p22	PREDICTED: Rattus norvegicus LRRGT00190 (LOC498339), mRNA.					
Rattus norvegicus	RefSeq	GI_13786155-S	ILMN_267112	HNRPAB	NM_031330.1	NM_031330.1		83498	13786155	NM_031330.1	Hnrpab	NP_112620.1	ILMN_1362088	0006130010	S	2585	TCCGGAGCAAGGCGGGCCGAGTGTTTGAAGTGTCTGATACCATGACAGCT				10q22	Rattus norvegicus heterogeneous nuclear ribonucleoprotein A/B (Hnrpab), mRNA.	A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	A1F-C1	A1F-C1
Rattus norvegicus	RefSeq	GI_62078468-S	ILMN_297598	RGD1311893	NM_001013867.1	NM_001013867.1		288478	62078468	NM_001013867.1	RGD1311893	NP_001013889.1	ILMN_1352202	0003170072	S	2571	GCTCAGCAGAAGCAGATCGAGAACGAGGAGCTGGAGGCCAGGCTGAACAT				12p11	Rattus norvegicus hypothetical LOC288478 (RGD1311893), mRNA.					
Rattus norvegicus	RefSeq	GI_62656654-S	ILMN_61807	LOC497966	XM_573158.1	XM_573158.1		497966	62656654	XM_573158.1	LOC497966	XP_573158.1	ILMN_1360545	0002810239	S	826	GCTCTCAGGAAGCTGTCTTCTGGGGCAGAGCACGCAGGGTTGTTTGGCTA				10q26	PREDICTED: Rattus norvegicus similar to T-complex protein 1, zeta-2 subunit (TCP-1-zeta-2) (CCT-zeta-2) (Cctz-2) (LOC497966), mRNA.					
Rattus norvegicus	RefSeq	GI_62658227-S	ILMN_57051	RGD1306028_PREDICTED	XM_221261.3	XM_221261.3		303786	62658227	XM_221261.3	RGD1306028_predicted	XP_221261.3	ILMN_1366514	0004610008	S	465	TATGGGGGAGGCCACAGGTGACGGGTTGGGCTGAGGCAGTGGTATGAAAT				11q23	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30473 (predicted) (RGD1306028_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34868548-S	ILMN_292484	LOC366380	XM_001062962.1	XM_001062962.1		366380	109476579	XM_001062962.1	LOC366380	XP_001062962.1	ILMN_1356409	0005700088	S	380	ACAAGAACGGGAGAACTTACCTGGTGACGAAGCTCTGGGGCAGAACAAAG				5q24	PREDICTED: Rattus norvegicus alpha 2U globulin (LOC366380), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]; Interacting selectively with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process [goid 5550] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648337-S	ILMN_285854	PPFIBP1_PREDICTED	XM_001074157.1	XM_001074157.1		312855	109474466	XM_001074157.1	Ppfibp1_predicted	XP_001074157.1	ILMN_1350977	0002940671	S	3266	AGGATTTTGCTGCCCGCTCCCCAAGTGCCAGCATCACAGATGAAGACTCC				4q44	PREDICTED: Rattus norvegicus PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted) (Ppfibp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651485-S	ILMN_66510	LOC503065	XM_578585.1	XM_578585.1		503065	62651485	XM_578585.1	LOC503065	XP_578585.1	ILMN_1364682	0004050707	S	671	CTACTGTGCCAGAGACACACCTCTAGGAAAGGGTCTGCAGTGGATGCTAG					PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC503065), mRNA.					
Rattus norvegicus	RefSeq	GI_62664434	ILMN_51021	RGD1311016_PREDICTED	XM_225748.3	XM_225748.3		307288	62664434	XM_225748.3	RGD1311016_predicted	XP_225748.3	ILMN_1651116	0001500014	S	1909	GAAAAGGAGCACACAGAACGCTTTGGCCTCTTCCTCGTCTCCCACCAGGC				18q12.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9130427A09 (predicted) (RGD1311016_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667233-S	ILMN_281873	LOC501617	XM_001078508.1	XM_001078508.1		501617	109482691	XM_001078508.1	LOC501617	XP_001078508.1	ILMN_1356878	0004610128	S	1111	GGGCACAGCTCCAGAAGCAGCAGGAACACCCAGTCTTTGTATTTCACTGG				Xq34	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor-like 2-like 1 isoform 1 (LOC501617), mRNA.					
Rattus norvegicus	RefSeq	GI_20302090-S	ILMN_301547	PHLPB	NM_138898.1	NM_138898.1		192259	20302090	NM_138898.1	Phlpb	NP_620253.1	ILMN_1365906	0004070524	S	4497	CGTAATCTCAGGGATGGGGACTGCGTGCCTTTCTCTCTTGGGAGTTCACC				6q13	Rattus norvegicus phospholipase B (Phlpb), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate [goid 4622] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929027	ILMN_276607	ALDH3A2	NM_031731.1	NM_031731.1		65183	13929027	NM_031731.1	Aldh3a2	NP_113919.1	ILMN_1530151	0002230609	S	896	TACAGAAGATTAAGGATACGGTGAAGGACTTTTATGGGGAAAATGTAAAA	10	-	47411274-47411298:47413351-47413375	10q22	Rattus norvegicus aldehyde dehydrogenase family 3, subfamily A2 (Aldh3a2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence NAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Loosely bound to one surface of the endoplasmic reticulum membrane, but not integrated into the hydrophobic region [goid 42406] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IDA]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence IEA]; The chemical reactions and pathways involving formaldehyde (methanal, H2C=O), a colorless liquid or gas with a pungent odor, commonly used as a fixative or an antibacterial agent [goid 46292] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence IDA]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence IEA]; Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [goid 4030] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Aldh4; FALDH	Aldh4; FALDH
Rattus norvegicus	RefSeq	GI_62655797-A	ILMN_276607	ALDH3A2	NM_031731.1	NM_031731.1		65183	13929027	NM_031731.1	Aldh3a2	NP_113919.1	ILMN_1376460	0000130333	S	2637	CCAAGCTGCAGAGGTCTCATTGCCTTCCCAGGATCCAAATTAAGACTGCC	10	-	47400814-47400863	10q22	Rattus norvegicus aldehyde dehydrogenase family 3, subfamily A2 (Aldh3a2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence NAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Loosely bound to one surface of the endoplasmic reticulum membrane, but not integrated into the hydrophobic region [goid 42406] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IDA]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence IEA]; The chemical reactions and pathways involving formaldehyde (methanal, H2C=O), a colorless liquid or gas with a pungent odor, commonly used as a fixative or an antibacterial agent [goid 46292] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence IDA]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence IEA]; Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [goid 4030] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Aldh4; FALDH	Aldh4; FALDH
Rattus norvegicus	RefSeq	GI_62718774-S	ILMN_61609	LOC501471	XM_580196.1	XM_580196.1		501471	62718774	XM_580196.1	LOC501471	XP_580196.1	ILMN_1354600	0000610092	S	889	CAGCTGAAAGCCACAGCCAATCCTCAGATGGAGCTCGGGAAGTCTTGTCA					PREDICTED: Rattus norvegicus LOC501471 (LOC501471), mRNA.					
Rattus norvegicus	RefSeq	GI_54020665-S	ILMN_283986	IDH3G	NM_031551.1	NM_031551.1		25179	54020665	NM_031551.1	Idh3g	NP_113739.1	ILMN_1355472	0000460706	S	1158	GGAGGCCAGGGCACCACATCCCAAGCCATCCAGGACATCATTCGTCACAT	X	-	159701484-159701533	Xq37	Rattus norvegicus isocitrate dehydrogenase 3 (NAD), gamma (Idh3g), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence TAS]; The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle [goid 6102] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism [goid 45926] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+ [goid 4449] [evidence IEA]; Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+ [goid 4449] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP [goid 16616] [evidence IEA]	MGC94551; IDH	MGC94551; IDH
Rattus norvegicus	RefSeq	GI_55741533-S	ILMN_279193	MGC94542	NM_001006964.1	NM_001006964.1		290631	55741533	NM_001006964.1	MGC94542	NP_001006965.1	ILMN_1363345	0004480035	S	1207	GAGGAGAGAACCCACACCCTCGTCACTGGCACATGCTCAATCTCACACTG	16	+	18563980-18564029	16p14	Rattus norvegicus similar to RIKEN cDNA 5430437P03 (MGC94542), mRNA.					
Rattus norvegicus	RefSeq	GI_62657842-S	ILMN_57321	BBX_PREDICTED	XM_221497.4	XM_221497.4		303970	109493197	XM_221497.4	Bbx_predicted	XP_221497.3	ILMN_1368994	0000380592	S	3419	CTGCCTTCGCTGTAGCTCATCCAGCATCTCTTTTACCAGCCAGAGAGTGG	11	+	51799392-51799441	11q21	PREDICTED: Rattus norvegicus bobby sox homolog (Drosophila) (predicted) (Bbx_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948525-S	ILMN_286670	COMMD10	NM_001004276.1	NM_001004276.1		361323	51948525	NM_001004276.1	Commd10	NP_001004276.1	ILMN_1355215	0001740736	S	1035	GGGAAGCAGCCACAAGCCATCAAATGTTTTGGCATTCATCCTACCACTTG	18	+	41362481-41362530	18q11	Rattus norvegicus COMM domain containing 10 (Commd10), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94865	MGC94865
Rattus norvegicus	RefSeq	GI_62665185-S	ILMN_58966	PSKH1_PREDICTED	XM_344760.2	XM_344760.2		364993	62665185	XM_344760.2	Pskh1_predicted	XP_344761.1	ILMN_1373510	0007050075	S	3011	AGAGTGGAAGCCTCACAGCCTCAGAGTTCCCCCACCTACCAGTTCCCTAG				19q12	PREDICTED: Rattus norvegicus protein serine kinase H1 (predicted) (Pskh1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639220-S	ILMN_282109	MAP3K10	XM_001073032.1	XM_001073032.1		308463	109461508	XM_001073032.1	Map3k10	XP_001073032.1	ILMN_1351660	0000630162	S	3191	CAGCCATGAATGTAGCGCCCCAGGCTCCGCCACAGCCCACCATTTGCCAA				1q21	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase kinase 10 (Map3k10), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662537-S	ILMN_57157	LOC306380	XM_224759.3	XM_224759.3		306380	62662537	XM_224759.3	LOC306380	XP_224759.3	ILMN_1350287	0006380161	S	2766	TCTGGTAGCCTGGAGGACAAAGAGGAAGAAACGGAAGACTGGCCTGGGTG				16p14	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a (LOC306380), mRNA.					
Rattus norvegicus	RefSeq	GI_62648590-S	ILMN_290373	RGD1563405_PREDICTED	XM_001069820.1	XM_001069820.1		297806	109476090	XM_001069820.1	RGD1563405_predicted	XP_001069820.1	ILMN_1360818	0001990563	S	1153	AGGCCCCGAACACGATCACGCTTCAAGGATTCCACGGTGTACTGTTGCAT				5q12	PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase 4a2 (predicted) (RGD1563405_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577244	ILMN_271040	OLR386	NM_001000856.1	NM_001000856.1		405147	47577244	NM_001000856.1	Olr386	NP_001000856.1	ILMN_1650391	0002260093	S	792	GTATCTCAACCCCACGCAGACAGGAAGGCTGGACCTCAACAAAGGAATAG	1|NW_047581.1	-	293475-293524		Rattus norvegicus olfactory receptor 386 (Olr386), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr386	Olr386
Rattus norvegicus	RefSeq	GI_21450772-S	ILMN_63862	RPS2	NM_031838.2	NM_031838.2		83789	21450772	NM_031838.2	Rps2	NP_114026.2	ILMN_1349681	0000070162	S	50	GGGGGCCCAGGATTAGGAGGCCGCGGGGCTCGTGGAGGTAAAGCTGAAGA				10q12	Rattus norvegicus ribosomal protein S2 (Rps2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; The joining of the small ribosomal subunit, ternary complex, and mRNA [goid 1731] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IMP]; Interacting selectively with fibroblast growth factor 1 [goid 48602] [evidence ISS]; Interacting selectively with fibroblast growth factor 3 [goid 48604] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	Rps2r1	Rps2r1
Rattus norvegicus	RefSeq	GI_56090488-S	ILMN_274472	LYL1	NM_001007677.1	NM_001007677.1		304663	56090488	NM_001007677.1	Lyl1	NP_001007678.1	ILMN_1374969	0003440725	S	1356	CGAGAAGACCCTACCAAGTGTGTGCAGGACCTACCCCGTGAAGCCCAACT	19	-	25115287-25115336	19q11	Rattus norvegicus lymphoblastic leukemia derived sequence 1 (Lyl1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	MGC93688	MGC93688
Rattus norvegicus	RefSeq	GI_34870061-S	ILMN_64205	LOC304199	XM_221810.2	XM_221810.2		304199	34870061	XM_221810.2	LOC304199	XP_221810.2	ILMN_1361624	0004610500	S	635	CCTCAGTGACCATTTACGCGAGGGTTCCTGGCAATGGGTGGATCACAGCC					PREDICTED: Rattus norvegicus similar to CD209 antigen; dendritic cell-specific ICAM3-grabbing nonintegrin (predicted) (LOC304199), mRNA.					
Rattus norvegicus	RefSeq	GI_47576332-S	ILMN_289088	OLR1528	NM_001001099.1	NM_001001099.1		405995	47576332	NM_001001099.1	Olr1528	NP_001001099.1	ILMN_1350536	0006940170	S	691	GAGAGGGGCAGAAGAAAAGCCTTCTCCACTTGCAGTTCCCATCTCTTGTC	11	+	41777892-41777941	11q12	Rattus norvegicus olfactory receptor 1528 (Olr1528), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1528	Olr1528
Rattus norvegicus	RefSeq	GI_57527347-A	ILMN_285847	OASL2	NM_001009682.1	NM_001009682.1		304549	57527347	NM_001009682.1	Oasl2	NP_001009682.1	ILMN_1376662	0000130270	S	1479	TGGAGGCCCATGTACGGAGGATTGGGTACTACTGTTTGAGGGTGAGGAGC	12	-	42996739-42996788	12q16	Rattus norvegicus 2'-5' oligoadenylate synthetase-like 2 (Oasl2), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence IEA]; Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661473-S	ILMN_66724	AP1G2_PREDICTED	XM_214197.3	XM_214197.3		290215	62661473	XM_214197.3	Ap1g2_predicted	XP_214197.2	ILMN_1356512	0001770026	S	2390	CAAGGCCCCTTTGCGACTAAAGCTTCGCCTCACCTACAACCACTCTGGCC					PREDICTED: Rattus norvegicus adaptor protein complex AP-1, gamma 2 subunit (predicted) (Ap1g2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663797-S	ILMN_271629	ASB13_PREDICTED	XM_001068810.1	XM_001068810.1		361268	109506130	XM_001068810.1	Asb13_predicted	XP_001068810.1	ILMN_1365540	0002510538	S	1663	CACAGCACTGCGGGGTACTTTTATCTCAGCGGCTCTATGCTGCTCCCAAG				17q12.3	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing 13 (predicted) (Asb13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665034-S	ILMN_291102	IL27RA_PREDICTED	XM_001072192.1	XM_001072192.1		288905	109508645	XM_001072192.1	Il27ra_predicted	XP_001072192.1	ILMN_1360075	0001690711	S	1066	CTGGACAAGCTCAACTGGACCCGTCTCCCCCCGGAAAACCTCAGCACTTT				19q11	PREDICTED: Rattus norvegicus interleukin 27 receptor, alpha (predicted) (Il27ra_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653231-S	ILMN_65429	RGD1311077_PREDICTED	XM_345897.3	XM_345897.3		367021	109483076	XM_345897.3	RGD1311077_predicted	XP_345898.2	ILMN_1374785	0003190400	S	839	CCTGAGCAGGAGCAGGGACTGTGGAAACAGAGCCATAAATCCTCTGCAGC	8	+	10636966-10636997:10637150-10637167	8q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810485I05 (predicted) (RGD1311077_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656888-S	ILMN_53319	HOXB8_MAPPED	XM_220888.3	XM_220888.3		24457	109488876	XM_220888.3	Hoxb8_mapped	XP_220888.2	ILMN_1375049	0002900095	S	1637	GTTGTTCCTCTATACTTTGTTCTGTTGTCTGCGCCTGAAAAGGGCGGAAG	10	+	85016009-85016058	10q31	PREDICTED: Rattus norvegicus homeo box B8 (mapped) (Hoxb8_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_8394244-S	ILMN_269588	SCN1B	NM_017288.1	NM_017288.1		29686	8394244	NM_017288.1	Scn1b	NP_058984.1	ILMN_1370099	0001980253	S	1255	TTGATGGGGTGAAGAGGGGTCGGGACAGGGACAGTAGTGGGCAGGGGGTT	1	-	86162448-86162497	1q21	Rattus norvegicus sodium channel, voltage-gated, type I, beta (Scn1b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577916	ILMN_275716	OLR1145	NM_001000429.1	NM_001000429.1		300405	47577916	NM_001000429.1	Olr1145	NP_001000429.1	ILMN_1651029	0002340347	S	684	GCCATCATCAGGCAGTAGGCATAGAGCTTTCTCAACCTGTGGGTCTCACC	8	-	17541479-17541528	8q13	Rattus norvegicus olfactory receptor 1145 (Olr1145), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1145	Olr1145
Rattus norvegicus	RefSeq	GI_62660990-S	ILMN_49377	LOC498438	XM_344284.2	XM_344284.2		498438	62660990	XM_344284.2	LOC498438	XP_344285.2	ILMN_1372265	0000540072	S	1174	CTGCCAGCTAGGCTCCGGCCTTCTGTACACAGCTCCTTTCTGGGATCGTA				15p16	PREDICTED: Rattus norvegicus similar to KCNMA1 protein (LOC498438), mRNA.					
Rattus norvegicus	RefSeq	GI_9507008-S	ILMN_266994	PTPN5	NM_019253.1	NM_019253.1		29644	9507008	NM_019253.1	Ptpn5	NP_062126.1	ILMN_1367613	0000940193	S	2519	CCCTCCAAGAGTAGGGTGGGGACAGCTCCAGACCTGCAAGGCATCTTTCT	1	-	97629437-97629486	1q22	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 5 (Ptpn5), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	STEP	STEP
Rattus norvegicus	RefSeq	GI_62078582-S	ILMN_284231	RGD1308734	NM_001013927.1	NM_001013927.1		297694	62078582	NM_001013927.1	RGD1308734	NP_001013949.1	ILMN_1364607	0006370239	S	1477	GCCAAAATCTTCAGGCGTGACCAAGGGACCGTGACAGACATGGCCTCCAT	4	-	173613027-173613076	4q43	Rattus norvegicus similar to RIKEN cDNA 1100001H23 (RGD1308734), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664921-S	ILMN_68328	LOC307727	XM_226325.3	XM_226325.3		307727	62664921	XM_226325.3	LOC307727	XP_226325.3	ILMN_1365124	0003360541	S	8104	GACTAGAGAGTGGGAAGCCTAGCACGGCTGCGGGAAAAACGTGCATGATC				Xq13	PREDICTED: Rattus norvegicus similar to Probable chromodomain-helicase-DNA-binding protein KIAA1416 (LOC307727), mRNA.					
Rattus norvegicus	RefSeq	GI_62658311-S	ILMN_64295	LOC498124	XM_573335.1	XM_573335.1		498124	62658311	XM_573335.1	LOC498124	XP_573335.1	ILMN_1358281	0003450487	S	792	CCCAAGGCTCAAGTTCACTCGCAGGGTGCTGCCCCCGAGCTTTCTGAGGA					PREDICTED: Rattus norvegicus similar to cytochrome P450 2C24 (LOC498124), mRNA.					
Rattus norvegicus	RefSeq	GI_62652392-S	ILMN_66876	LOC503150	XM_578671.1	XM_578671.1		503150	62652392	XM_578671.1	LOC503150	XP_578671.1	ILMN_1364618	0004280347	S	296	TCCGGACCTTCCCAAGGCCTGCAAGCCCTTTAGTTCTCGGAAGCACATCG				7q22	PREDICTED: Rattus norvegicus similar to ribosomal protein (LOC503150), mRNA.					
Rattus norvegicus	RefSeq	GI_62718213-S	ILMN_282416	LOC501326	XR_009028.1	XR_009028.1		501326	109514377	XR_009028.1	LOC501326		ILMN_1367476	0004070368	S	1528	ACGCATGCTTGCATGGACAAGTTCCTGAGACGCTGGATGTGAAATGCCAC					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501326), mRNA.					
Rattus norvegicus	RefSeq	GI_62657434-S	ILMN_63480	LOC501748	XM_577149.1	XM_577149.1		501748	62657434	XM_577149.1	LOC501748	XP_577149.1	ILMN_1362129	0004920168	S	802	AGAAGCGCCGACGGAAACGGCGGAAACCAGCGAACCTCAACATCTGGGTT					PREDICTED: Rattus norvegicus similar to Da1-6 (LOC501748), mRNA.					
Rattus norvegicus	RefSeq	GI_62654514-S	ILMN_60908	KBTBD5_PREDICTED	XM_236723.3	XM_236723.3		316088	62654514	XM_236723.3	Kbtbd5_predicted	XP_236723.3	ILMN_1356514	0005360452	S	1560	ACAGAAGCCAGCAGGACCCATCCAGCAAAGATGGTGGTTAGTGAGTGCCC				8q32	PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain containing 5 (predicted) (Kbtbd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576004-S	ILMN_287473	OLR1451	NM_001000957.1	NM_001000957.1		405306	47576004	NM_001000957.1	Olr1451	NP_001000957.1	ILMN_1372485	0001450239	S	777	CATAAGACCCAAGTCCCACCAGCCAGGCAAGAGCGACAAAGTGGTGTCTG	10	+	44938475-44938524	10q22	Rattus norvegicus olfactory receptor 1451 (Olr1451), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1451	Olr1451
Rattus norvegicus	RefSeq	GI_62648512-S	ILMN_281851	RPL7	XM_001062960.1	XM_001062960.1		297755	109475997	XM_001062960.1	Rpl7	XP_001062960.1	ILMN_1370118	0003170603	S	15	TCCGGCTGGAACCATGGAGGCTGTACCAGAGAAGAAAAAGAAGGTTGCCG				5q11	PREDICTED: Rattus norvegicus ribosomal protein L7 (Rpl7), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652975-S	ILMN_50538	LOC503168	XM_578692.1	XM_578692.1		503168	62652975	XM_578692.1	LOC503168	XP_578692.1	ILMN_1356605	0003840739	S	63	CAACCAGCCAGTCATCAACCACAAAGAGCTCGGAGAGAGCATTACTGCCC				7q35	PREDICTED: Rattus norvegicus similar to Sf3a3 protein (LOC503168), mRNA.					
Rattus norvegicus	RefSeq	GI_13592076-S	ILMN_297021	RPS27A	NM_031113.1	NM_031113.1		81777	13592076	NM_031113.1	Rps27a	NP_112375.1	ILMN_1365412	0001400408	S	162	GCAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTTTGT	14	-	110560422-110560471	14q22	Rattus norvegicus ribosomal protein S27a (Rps27a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11968135-S	ILMN_300179	RHOB	NM_022542.1	NM_022542.1		64373	11968135	NM_022542.1	Rhob	NP_071987.1	ILMN_1351285	0003360632	S	1595	AGCCACCTGCAGAGGATCCAGGGTGTGCTGTGGGGTCACTTTTGCCATAA	6	-	32052863-32052912	6q14	Rattus norvegicus ras homolog gene family, member B (Rhob), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The process of apoptosis in transformed cells, cells that have undergone changes manifested by escape from control mechanisms, increased growth potential, alterations in the cell surface, karyotypic abnormalities, morphological and biochemical deviations from the norm [goid 6927] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence ISS]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases angiogenesis [goid 45766] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence ISS]	Arhb	Arhb
Rattus norvegicus	RefSeq	GI_13786201-S	ILMN_278317	VDAC2	NM_031354.1	NM_031354.1		83531	13786201	NM_031354.1	Vdac2	NP_112644.1	ILMN_1356137	0001500053	S	1227	GTTGGATGGTTATCTCGTTATCAGTGCTGCCGTCGTGCGGCCTCCTCTAC	15	-	2515722-2515771	15p16	Rattus norvegicus voltage-dependent anion channel 2 (Vdac2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion [goid 8308] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662360-S	ILMN_47857	LOC361119	XM_346938.2	XM_346938.2		361119	62662360	XM_346938.2	LOC361119	XP_346939.2	ILMN_1364782	0000110577	S	743	CAAGGCATCGGTCAAACCGGAAACGGAAGCGGTGAAGCCGTTCGCCATCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA A230063L24 gene (LOC361119), mRNA.					
Rattus norvegicus	RefSeq	GI_6981015-S	ILMN_279545	HCRT	NM_013179.1	NM_013179.1		25723	6981015	NM_013179.1	Hcrt	NP_037311.1	ILMN_1355146	0002260047	S	328	CAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCAT	10	-	89699812-89699861	10q32.1	Rattus norvegicus hypocretin (Hcrt), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae [goid 5791] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence IDA]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence NAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence NAS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication [goid 8156] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence IDA]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence IDA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51928] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51970] [evidence IDA]; Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation [goid 51971] [evidence IDA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IDA]	The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence TAS]; The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones [goid 5184] [evidence IDA]; Interacting selectively with a type 1 hypocretin receptor [goid 31771] [evidence IDA]; Interacting selectively with a type 2 hypocretin receptor [goid 31772] [evidence IDA]	orexin-A	orexin-A
Rattus norvegicus	RefSeq	GI_62641207-S	ILMN_268422	BUCS1_PREDICTED	XM_001079043.1	XM_001079043.1		361638	109462771	XM_001079043.1	Bucs1_predicted	XP_001079043.1	ILMN_1364584	0006650576	S	1520	ATCAATGCTTCCGGGTACCGCATCGGGCCTACAGAGGTGGAGAACGCCTT				1q35	PREDICTED: Rattus norvegicus butyryl Coenzyme A synthetase 1 (predicted) (Bucs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718261-S	ILMN_50700	LOC363301	XM_347120.2	XM_347120.2		363301	62718261	XM_347120.2	LOC363301	XP_347121.2	ILMN_1360500	0007000484	S	863	GACCAACCATAAGCTGAAGAAGGAGATAACCTTGTCTAGGTAAGTCCTGG					PREDICTED: Rattus norvegicus hypothetical LOC363301 (LOC363301), mRNA.					
Rattus norvegicus	RefSeq	GI_62650839-S	ILMN_276030	PPP2R5E_PREDICTED	XM_001080781.1	XM_001080781.1		299147	109479533	XM_001080781.1	Ppp2r5e_predicted	XP_001080781.1	ILMN_1360812	0004590600	S	2620	CCAGCGGTTGTTGTCGATTCTTGTTCTATAGCTCATCGCAGCGCCAGCCC				6q24	PREDICTED: Rattus norvegicus protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) (Ppp2r5e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638630	ILMN_59264	LOC499036	XM_574323.1	XM_574323.1		499036	62638630	XM_574323.1	LOC499036	XP_574323.1	ILMN_1650118	0003130450	S	727	ACTGGCTGTATCAGCAGGGCTAACTGTAGAGGATTCTCCACGACCCTGAG					PREDICTED: Rattus norvegicus similar to kinesin family member 25 (LOC499036), mRNA.					
Rattus norvegicus	RefSeq	GI_62647788-S	ILMN_278787	LOC686877	XM_001076138.1	XM_001076138.1		686877	109473919	XM_001076138.1	LOC686877	XP_001076138.1	ILMN_1365580	0002370446	S	492	AAGGGAGCAGCCTTGGAGACCACCAGAAACCAGAAGTGGTCCATCCCACC					PREDICTED: Rattus norvegicus hypothetical protein LOC686877 (LOC686877), mRNA.					
Rattus norvegicus	RefSeq	GI_60097944-S	ILMN_274203	UGT2B	XM_001061549.1	XM_001061549.1		24862	109521287	XM_001061549.1	Ugt2b	XP_001061549.1	ILMN_1367115	0001660162	S	503	CTCTGGATGTGATTGGATTCCTGCTCACCTGTTTTGCAGTCATTGCAGCT				14p21	PREDICTED: Rattus norvegicus UDP glycosyltransferase 2 family, polypeptide B (Ugt2b), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IDA]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47606358-S	ILMN_278318	OLR70	NM_001001269.1	NM_001001269.1		293215	47606358	NM_001001269.1	Olr70	NP_001001269.1	ILMN_1355035	0006110315	S	596	TCTATGGGCTCTTTGTTGTGGCCTGTACTGTGGGTGTAGACTCCCTACTC	1	-	160788979-160789028	1q32	Rattus norvegicus olfactory receptor 70 (Olr70), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr70	Olr70
Rattus norvegicus	RefSeq	GI_47577310-S	ILMN_274602	OLR411	NM_001000385.1	NM_001000385.1		296675	47577310	NM_001000385.1	Olr411	NP_001000385.1	ILMN_1364373	0006040139	S	812	ACATAGTTGCTTCAGTGATGTACACAGTGGTCACTCCCATGCTGAACCCT	3	-	16348401-16348450	3q11	Rattus norvegicus olfactory receptor 411 (Olr411), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr411	Olr411
Rattus norvegicus	RefSeq	GI_41054911-S	ILMN_291064	MAP1LC3B	NM_022867.2	NM_022867.2		64862	41054911	NM_022867.2	Map1lc3b	NP_074058.2	ILMN_1372654	0003870270	S	1600	GGGTTGTGTACGTCGTCATGTCCCTGGTTTATAACTATGGTGCGGTCGGG	19	+	51854714-51854763	19q12	Rattus norvegicus microtubule-associated protein 1 light chain 3 beta (Map1lc3b), mRNA.	The lipid bilayer surrounding an autophagic vacuole, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered [goid 421] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The lipid bilayer surrounding an autophagic vacuole, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered [goid 421] [pmid 15169837] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of protein binding [goid 32092] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of tubulin, including microtubules [goid 15631] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	Mpl3; MGC93422; Map1lc3	Mpl3; MGC93422; Map1lc3
Rattus norvegicus	RefSeq	GI_62662229-S	ILMN_57063	LOC498583	XM_573859.1	XM_573859.1		498583	62662229	XM_573859.1	LOC498583	XP_573859.1	ILMN_1350197	0002470047	S	4027	GCCTTGCTTTCCAGGAGGTGCTCCATTTATTGCGCGGGGCTCCAGAGGAA				16p16	PREDICTED: Rattus norvegicus similar to FERM and PDZ domain containing 2 (LOC498583), mRNA.					
Rattus norvegicus	RefSeq	GI_62665100-S	ILMN_297556	RGD1562701_PREDICTED	XM_001074070.1	XM_001074070.1		307767	109508719	XM_001074070.1	RGD1562701_predicted	XP_001074070.1	ILMN_1372981	0004200487	S	6336	CGATGACAGCACCACCAACTGTGAAGAGGAGTGTGTGTAGTCCCTTGGAC				19q11	PREDICTED: Rattus norvegicus similar to Fras1 related extracellular matrix protein 1 (predicted) (RGD1562701_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654746-S	ILMN_56313	RGD1563020_PREDICTED	XM_236961.3	XM_236961.3		301271	109485790	XM_236961.3	RGD1563020_predicted	XP_236961.3	ILMN_1374069	0006760136	S	853	ATGAGGAAGCTCCAGGATGAGCACCAAGACCTCCAACTGTACTCTCTGGC	9	-	14362994-14363043	9q12	PREDICTED: Rattus norvegicus similar to OTTHUMP00000016566 (predicted) (RGD1563020_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34874790	ILMN_56313	RGD1563020_PREDICTED	XM_236961.3	XM_236961.3		301271	109485790	XM_236961.3	RGD1563020_predicted	XP_236961.3	ILMN_1650688	0002190377	S	2586	CCTGACCTTCACACTGTTCAAATGCTTGCTGCTGACCGGGGGTTGCACGC	9	-	14220570-14220619	9q12	PREDICTED: Rattus norvegicus similar to OTTHUMP00000016566 (predicted) (RGD1563020_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.6620	ILMN_161137	LOC499414	Rn.6620		Rn.6620		62665803	XM_579966	LOC499414		ILMN_1530458	0006200577	S	1170	TTATTTCATTACTAAGCTCTGAAAAGGGAAAGTCAAAGCCAGTTGTGATT					PREDICTED: Rattus norvegicus LOC499414 (LOC499414),					
Rattus norvegicus	RefSeq	GI_62647032-S	ILMN_271090	RGD1306271_PREDICTED	XM_001069222.1	XM_001069222.1		312246	109473359	XM_001069222.1	RGD1306271_predicted	XP_001069222.1	ILMN_1374545	0000610397	S	5162	GTCCTGCTCAGACGGCCAACAACCCTTGCAGCAGATACGAAGACTACGGG				4q22	PREDICTED: Rattus norvegicus similar to KIAA1549 protein (predicted) (RGD1306271_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865911-A	ILMN_284569	NAP1L4	NM_001012170.1	NM_001012170.1		361684	58865911	NM_001012170.1	Nap1l4	NP_001012170.1	ILMN_1376385	0003520113	S	2142	GACAGCCATGTCCACAGTGACCAGCCATGTAGAGCGTGCTCAGCCTTACC	1	-	203890880-203890929	1q41	Rattus norvegicus nucleosome assembly protein 1-like 4 (Nap1l4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62649274-S	ILMN_66598	BC060737_PREDICTED	XM_233215.3	XM_233215.3		313385	62649274	XM_233215.3	BC060737_predicted	XP_233215.3	ILMN_1371297	0006400161	S	3245	CACCTCTTCCTGGATGCTGTTGGTGCCACGGGGAGAAGAGAGCGGTTCTT				5q33	PREDICTED: Rattus norvegicus cDNA BC060737 (predicted) (BC060737_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19882214-S	ILMN_283769	HEMGN	NM_133294.1	NM_133294.1		113882	19882214	NM_133294.1	Hemgn	NP_579828.1	ILMN_1357584	0006290133	S	2276	ATGCTGGGGTTGTAAAACGCCTAAATGGCTCAGTGCCTTTGCTCACTAGG	5	-	62955248-62955297	5q22	Rattus norvegicus hemogen (Hemgn), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of osteoblast differentiation [goid 45667] [evidence IDA]		Edag1; Edag-1; RP59; Hgn	Edag1; Edag-1; RP59; Hgn
Rattus norvegicus	RefSeq	GI_62657126-S	ILMN_281719	LOC684984	XM_001061779.1	XM_001061779.1		684984	109489067	XM_001061779.1	LOC684984	XP_001061779.1	ILMN_1359652	0001780632	S	1199	CCTGCATATGTCTGCGGAGGAACTGGCCTTCTCCGAGTTCATCTCTGTGT	10	+	91120625-91120674	10q32.1	PREDICTED: Rattus norvegicus similar to triggering receptor expressed on myeloid cells 4 (LOC684984), mRNA.					
Rattus norvegicus	RefSeq	GI_62664249-S	ILMN_52658	LOC498845	XM_574130.1	XM_574130.1		498845	62664249	XM_574130.1	LOC498845	XP_574130.1	ILMN_1361592	0003520338	S	2361	TGGGGACCCTGTCCCAGAGCTACCAGTATGATGTGTGTTTGACAGGAAGT					PREDICTED: Rattus norvegicus similar to protocadherin beta 17 (LOC498845), mRNA.					
Rattus norvegicus	RefSeq	GI_62641825-S	ILMN_60418	RGD1308106_PREDICTED	XM_342009.3	XM_342009.3		361719	109459807	XM_342009.3	RGD1308106_predicted	XP_342010.3	ILMN_1353413	0004610458	S	1820	TCCTCCAGCTCTTCTCCCACACGCAGCTCAGGACCACCGACAGTAAGAAC	1	-	210053084-210053133	1q43	PREDICTED: Rattus norvegicus LOC361719 (predicted) (RGD1308106_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605639-S	ILMN_276330	FIP1L1	NM_001008295.1	NM_001008295.1		289582	56605639	NM_001008295.1	Fip1l1	NP_001008296.1	ILMN_1355940	0005420494	S	844	GTTCAAGACTGGTCTGCCACCAAGCAGGAGATTACCTGGAGCAATCGATG	14	-	36017073-36017096:36031206-36031231	14p11	Rattus norvegicus FIP1 like 1 (S. cerevisiae) (Fip1l1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC93674	MGC93674
Rattus norvegicus	RefSeq	GI_62638475-S	ILMN_51325	LOC292266	XM_214760.3	XM_214760.3		292266	62638475	XM_214760.3	LOC292266	XP_214760.3	ILMN_1350179	0006550441	S	981	GACAAGCTAAATCAGGTACTGTGTGCTGAAGGTTCCTCTGTGCCCTGCTC				1p11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23305 (predicted) (LOC292266), mRNA.					
Rattus norvegicus	RefSeq	GI_47576688-S	ILMN_273135	OLR1707	NM_001001115.1	NM_001001115.1		406014	47576688	NM_001001115.1	Olr1707	NP_001001115.1	ILMN_1357984	0001660164	S	757	TCTACAGGCTCCTGTGCATACCTAAACCCTACCTCAGACTCTCCAACTGC	20	+	824488-824537	20p12	Rattus norvegicus olfactory receptor 1707 (Olr1707), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1707	Olr1707
Rattus norvegicus	RefSeq	GI_61557117-S	ILMN_292478	PCGF6	NM_001013154.1	NM_001013154.1		309457	61557117	NM_001013154.1	Pcgf6	NP_001013172.1	ILMN_1363052	0005720373	S	1680	GGACAGGTGTCACAAAAGTCCCTCGGTGCGGCTGTTGATAATGCCATTGC	1	-	252358348-252358397	1q54	Rattus norvegicus polycomb group ring finger 6 (Pcgf6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Rnf134	Rnf134
Rattus norvegicus	RefSeq	GI_62638505-S	ILMN_295574	LOC683564	XM_001066537.1	XM_001066537.1		683564	109460727	XM_001066537.1	LOC683564	XP_001066537.1	ILMN_1365474	0005910239	S	446	TTTGGGTTTTTCTCAGAGCAACGCTCACCGGCGGGACCAGCCACCGAGAG					PREDICTED: Rattus norvegicus similar to neurexin II (LOC683564), mRNA.					
Rattus norvegicus	RefSeq	GI_62663688-S	ILMN_295368	MPP7	XM_001061023.1	XM_001061023.1		307035	109506005	XM_001061023.1	Mpp7	XP_001061023.1	ILMN_1368032	0003290577	S	1654	GCAGAGATGACCAAGGGACTGCAAAGCCCTTCACGGAAGAAGACTTTCAA				17q12.1	PREDICTED: Rattus norvegicus membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7), transcript variant 1 (Mpp7), mRNA.	A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649694-S	ILMN_271868	RGD1306498_PREDICTED	XM_001060148.1	XM_001060148.1		297879	109477282	XM_001060148.1	RGD1306498_predicted	XP_001060148.1	ILMN_1358452	0006370148	S	3064	GAACCCAGAGAAGCCCCCTTCCACATCACCCCCAGAGAAGAAAACTAGAC				5q36	PREDICTED: Rattus norvegicus similar to Cas-associated zinc finger protein (predicted) (RGD1306498_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605733-S	ILMN_272327	PARP3	NM_001008328.1	NM_001008328.1		300985	56605733	NM_001008328.1	Parp3	NP_001008329.1	ILMN_1369387	0004200242	S	1654	ACAAGGAGAGCCAGTGCCGTCTGCGCTACCTGCTGGAGATTCACCTCTGA	8	-	111615910-111615910:111615911-111615959	8q32	Rattus norvegicus poly (ADP-ribose) polymerase family, member 3 (Parp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]	Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor [goid 3950] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94593; Adprtl3	MGC94593; Adprtl3
Rattus norvegicus	RefSeq	GI_62644054-A	ILMN_281748	ALX3	NM_001007012.1	NM_001007012.1		365900	55742833	NM_001007012.1	Alx3	NP_001007013.1	ILMN_1376368	0006200632	S	1432	GTGGTTCTTAGGTCTGGCCTCACTTTTGCCTTCTTACCACCAGAGGGCGG				2q34	Rattus norvegicus aristaless-like homeobox 3 (Alx3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638963-S	ILMN_264393	MEIS3_PREDICTED	XM_001074213.1	XM_001074213.1		361514	109461296	XM_001074213.1	Meis3_predicted	XP_001074213.1	ILMN_1364323	0005690484	S	1724	AAGAGACTGGGGTTGGGCAAGGATGGGCAAGGAAGGAGGGTCAGCTGGAT				1q21	PREDICTED: Rattus norvegicus Meis1, myeloid ecotropic viral integration site 1 homolog 3 (mouse) (predicted) (Meis3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647688-S	ILMN_268130	RGD1561200_PREDICTED	XR_008869.1	XR_008869.1		500230	109473795	XR_008869.1	RGD1561200_predicted		ILMN_1362015	0006020300	S	1444	CTGTACCCAGGGACTCGACCCTACAGGATGAAAGTGCCCCAGGGCTTCTA				4q34	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12056 (predicted) (RGD1561200_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662946	ILMN_59045	RGD1566042_PREDICTED	XM_214392.4	XM_214392.4		290877	109503572	XM_214392.4	RGD1566042_predicted	XP_214392.4	ILMN_1651027	0002690010	S	723	GATCCTAGCCTACACCGGCTTGTGCCCTCCGTCTATGAGTGTGCCAACCT	16	-	80938400-80938449	16q12.5	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC20579 (predicted) (RGD1566042_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58000439-S	ILMN_294550	TAAR7E	NM_175590.2	NM_175590.2		294133	58000439	NM_175590.2	Taar7e	NP_783180.2	ILMN_1360920	0006040184	S	597	CACCTGTGTGGGCGGCTGCCAACTTGCAGTGAATCAAAGCTGGGTCTTCA	1	-	21927182-21927231	1p12	Rattus norvegicus trace-amine-associated receptor 7e (Taar7e), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	TA14	TA14
Rattus norvegicus	RefSeq	GI_62654426-S	ILMN_56411	RGD1307859_PREDICTED	XM_236641.4	XM_236641.4		301015	109483970	XM_236641.4	RGD1307859_predicted	XP_236641.4	ILMN_1354061	0005890095	S	1224	GTTTGCGTGGGAAGAAAGAAGCCCACTGCTCAGGAGGTGTTACCGGCTGT	8	-	114157860-114157909	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E330009P21 gene (predicted) (RGD1307859_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655193-S	ILMN_48722	RGD1560678_PREDICTED	XM_237287.4	XM_237287.4		301510	109486251	XM_237287.4	RGD1560678_predicted	XP_237287.4	ILMN_1355647	0004060450	S	1135	ACCACAGGGAAGCCACAAGAGTGGACAGGAGTAACCCGTGCAACCGTGCA	9	+	73452556-73452605	9q33	PREDICTED: Rattus norvegicus similar to FLJ46536 protein (predicted) (RGD1560678_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506496-S	ILMN_285648	CLTC	NM_019299.1	NM_019299.1		54241	9506496	NM_019299.1	Cltc	NP_062172.1	ILMN_1374305	0005050600	S	5746	GCTAGTGTGTTGCTCACTTCATGTGTAACAGGTGCCCTCATGTTGTGCTG	10	-	74977098-74977147	10q26	Rattus norvegicus clathrin, heavy chain (Hc) (Cltc), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence ISS]; A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes [goid 30118] [evidence TAS]; A clathrin coat found on a vesicle of the trans-Golgi network [goid 30130] [evidence IEA]; The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex [goid 30132] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; The lipid bilayer surrounding a clathrin-coated endocytic vesicle [goid 30669] [evidence EXP]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62650412-S	ILMN_268941	CAD_MAPPED	XM_001064023.1	XM_001064023.1		24240	109478981	XM_001064023.1	Cad_mapped	XP_001064023.1	ILMN_1362976	0003780398	S	6817	CATGGCTCTGCTTGCCACCGTGCTAGGCCGTTTTTAGGACCCAGCCTTCT				6q14	PREDICTED: Rattus norvegicus carbamyl phosphatate synthetase 2 (mapped), transcript variant 4 (Cad_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62650437-S	ILMN_279126	NCOA1_PREDICTED	XM_001070473.1	XM_001070473.1		313929	109479103	XM_001070473.1	Ncoa1_predicted	XP_001070473.1	ILMN_1373997	0006550465	S	4696	AACTCAAAAACCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGA				6q14	PREDICTED: Rattus norvegicus nuclear receptor coactivator 1 (predicted) (Ncoa1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647903-S	ILMN_65931	SUMF1_PREDICTED	XM_342731.2	XM_342731.2		362409	62647903	XM_342731.2	Sumf1_predicted	XP_342732.2	ILMN_1360059	0002360373	S	2161	GAAGGAAAGCGCTGGAGGAGCTGCCATGAGGGAAATGGACATGTGGCCAG				4q41	PREDICTED: Rattus norvegicus sulfatase modifying factor 1 (predicted) (Sumf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664930-S	ILMN_68751	LOC498920	XM_579884.1	XM_579884.1		498920	62664930	XM_579884.1	LOC498920	XP_579884.1	ILMN_1371828	0002340538	S	439	AGCTGCCACTGTTATTCACATACCACGAAGTCCTGCCCGCTCCAACTCCC					PREDICTED: Rattus norvegicus LOC498920 (LOC498920), mRNA.					
Rattus norvegicus	RefSeq	GI_19705536-S	ILMN_278311	AKR7A2	NM_134407.1	NM_134407.1		171445	19705536	NM_134407.1	Akr7a2	NP_599234.1	ILMN_1353094	0003360025	S	1076	GTCGTGACTCAAGACGCCAGGGCTTTTCTGCCAACTCTTAGAGTCACACC	5	+	158106049-158106098	5q36	Rattus norvegicus aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) (Akr7a2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IDA]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence NAS]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence TAS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Aiar	Aiar
Rattus norvegicus	RefSeq	GI_62665362-S	ILMN_280962	ZCCHC14_PREDICTED	XM_001079169.1	XM_001079169.1		365018	109509000	XM_001079169.1	Zcchc14_predicted	XP_001079169.1	ILMN_1355795	0003850750	S	3091	GCCCAAGGCCTAGTGGGCAGCAGCAATGGCTCCAGTCACAAAAAGAGTGG				19q12	PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 14 (predicted) (Zcchc14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882728-S	ILMN_161854	LOC363387	XM_343722.1	XM_343722.1			34882728	XM_343722.1	LOC363387		ILMN_2040635	0005360079	S	204	CAATGGCTGGGAACCGAAAGAACAGCAGCAAAGTGTCCTAGTTGCTCCCG					Rattus norvegicus similar to soluble guanylyl cyclase alpha2 subunit (LOC363387), mRNA.					
Rattus norvegicus	RefSeq	GI_62646467-S	ILMN_64172	STX16_PREDICTED	XM_342595.2	XM_342595.2		362283	62646467	XM_342595.2	Stx16_predicted	XP_342596.2	ILMN_1350357	0001050538	S	1161	ACCCTGCAAGTTGACGAGTGTCAGGACAAGCGAATGGGGGCACCAGTGGA				3q42	PREDICTED: Rattus norvegicus syntaxin 16 (predicted) (Stx16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640692-S	ILMN_49825	ASB7_PREDICTED	XM_344905.3	XM_344905.3		365277	109458889	XM_344905.3	Asb7_predicted	XP_344906.2	ILMN_1367104	0004010563	S	963	CCGGACTGTGAGCGAGAGTAAGAGTTATTCCAGACACTTAAAAGGCCTCG	1	-	121101134-121101183	1q22	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing 7 (predicted) (Asb7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647131-S	ILMN_270630	RGD1565470_PREDICTED	XM_001068791.1	XM_001068791.1		297025	109473354	XM_001068791.1	RGD1565470_predicted	XP_001068791.1	ILMN_1353816	0003190717	S	2195	CCGAAGCTACGCCCAGGTAATGTGTAGGGAGCTGATCTCACAAGACCCTC				4q22	PREDICTED: Rattus norvegicus similar to Kell protein (predicted) (RGD1565470_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647133-S	ILMN_270630	RGD1565470_PREDICTED	XM_001068791.1	XM_001068791.1		297025	109473354	XM_001068791.1	RGD1565470_predicted	XP_001068791.1	ILMN_1362145	0000840717	S	1275	GGGTTGGTGGATACCCTTTCACCAGCACTGGCCACTAAATTCCAGGAGGC				4q22	PREDICTED: Rattus norvegicus similar to Kell protein (predicted) (RGD1565470_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855599-S	ILMN_270630	RGD1565470_PREDICTED	XM_001068791.1	XM_001068791.1		297025	109473354	XM_001068791.1	RGD1565470_predicted	XP_001068791.1	ILMN_2039493	0005720082	S	306	GCCAGATGGGTGCTGCTAGCTGTCCTGCTTTGTGGCCTGCTCATTGGTTG				4q22	PREDICTED: Rattus norvegicus similar to Kell protein (predicted) (RGD1565470_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650400-S	ILMN_278400	LOC497813	NM_001024280.1	NM_001024280.1		497813	66730356	NM_001024280.1	LOC497813	NP_001019451.1	ILMN_1367009	0000610059	S	316	GTCTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCCGAAAAAGCCG	6	-	46514749-46514784:46515167-46515180	6q16	Rattus norvegicus similar to ribosomal protein S7 (LOC497813), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928713-S	ILMN_291293	CCL2	NM_031530.1	NM_031530.1		24770	13928713	NM_031530.1	Ccl2	NP_113718.1	ILMN_1357229	0005570369	S	239	CCAGCAGCAGGTGTCCCAAAGAAGCTGTAGTATTTGTCACCAAGCTCAAG	10	+	70257180-70257210:70257551-70257569	10q26	Rattus norvegicus chemokine (C-C motif) ligand 2 (Ccl2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence IMP]; The movement of a monocyte in response to an external stimulus [goid 2548] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IMP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; A response by a motile cell to a soluble chemical that involves an increase or decrease in speed (positive or negative orthokinesis) or of frequency of movement or a change in the frequency or magnitude of turning behavior (klinokinesis) [goid 42466] [evidence TAS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IMP]; The movement of a macrophage in response to an external stimulus [goid 48246] [evidence ISS]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IEA]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence NAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; Interacting selectively with a CCR2 chemokine receptor [goid 31727] [evidence IMP]	Scya2; Sigje; MCP-1	Scya2; Sigje; MCP-1
Rattus norvegicus	RefSeq	GI_62647501-S	ILMN_69684	LIN28_PREDICTED	XM_233546.3	XM_233546.3		298542	109472139	XM_233546.3	Lin28_predicted	XP_233546.3	ILMN_1358999	0005690039	S	318	GAAACGAAGATCCAAAGGAGACAGGTGCTACAACTGTGGTGGGCTAGACC	4	-	95844579-95844628	4q31	PREDICTED: Rattus norvegicus lin-28 homolog (C. elegans) (predicted) (Lin28_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661721-S	ILMN_57612	SUCLA2_PREDICTED	XM_341354.3	XM_341354.3		361071	109501747	XM_341354.3	Sucla2_predicted	XP_341355.2	ILMN_1357638	0001240670	S	1967	GCAGCCATCTTTCTTGCTTCCTCTGCAGAATGTCACTTGGAGTATGCCTG	15	+	54267355-54267404	15p11-q11	PREDICTED: Rattus norvegicus succinate-Coenzyme A ligase, ADP-forming, beta subunit (predicted) (Sucla2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980975-S	ILMN_270135	GPC3	NM_012774.1	NM_012774.1		25236	6980975	NM_012774.1	Gpc3	NP_036906.1	ILMN_1354013	0003190358	S	1948	CCTTGTATGCCTCCTCTCACCGCCATTAAGTAGGAGACTAACCACGTGTT	X	-	139192280-139192329	Xq36	Rattus norvegicus glypican 3 (Gpc3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of BMP signaling pathway activity [goid 30513] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of BMP signaling pathway activity [goid 30513] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism [goid 45926] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism [goid 45926] [evidence ISS]		OCI-5; MGC93606	OCI-5; MGC93606
Rattus norvegicus	RefSeq	GI_47576938-S	ILMN_286199	OLR247	NM_001000217.1	NM_001000217.1		293392	47576938	NM_001000217.1	Olr247	NP_001000217.1	ILMN_2039350	0003440482	S	846	GGTGGTAGTACCCATGTTAAACCCCCTTATCTACAGCCTCAGGAATAACG	1	+	165478654-165478703	1q33	Rattus norvegicus olfactory receptor 247 (Olr247), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr247	Olr247
Rattus norvegicus	RefSeq	GI_6981285-S	ILMN_287387	NPY	NM_012614.1	NM_012614.1		24604	6981285	NM_012614.1	Npy	NP_036746.1	ILMN_1357730	0003140095	S	189	GCGCCAGCAGAGGACATGGCCAGATACTACTCCGCTCTGCGACACTACAT	4	+	78038993-78039042	4q24	Rattus norvegicus neuropeptide Y (Npy), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence NAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence TAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; Feeding behavior in a fully developed and mature organism [goid 8343] [evidence IDA]; Any process that increases appetite [goid 32100] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IMP]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEP]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence TAS]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence ISS]; Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IEA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with a neuropeptide Y receptor [goid 31841] [evidence IMP]	RATNPY02; RATNPY; NPY02	RATNPY02; RATNPY; NPY02
Rattus norvegicus	RefSeq	GI_6981237-S	ILMN_275870	MYLPF	NM_012605.1	NM_012605.1		24584	6981237	NM_012605.1	Mylpf	NP_036737.1	ILMN_1365703	0005290739	S	378	GCAGTGCGACCGATTTTCCCAGGAGGAGATCAAGAATATGTGGGCAGCCT	1	+	186474223-186474248:186474362-186474385	1q36	Rattus norvegicus myosin light chain, phosphorylatable, fast skeletal muscle (Mylpf), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into a muscle cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed [goid 42694] [evidence ISS]; The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells [goid 55003] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; The multicellular organismal process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 60047] [evidence ISS]	Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric actin, also known as G-actin [goid 3785] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Mylpf; MLC2; Myl2; Myolc1	Mylpf; MLC2; Myl2; Myolc1
Rattus norvegicus	RefSeq	GI_62078594-S	ILMN_265094	UBE2A	NM_001013933.1	NM_001013933.1		298317	62078594	NM_001013933.1	Ube2a	NP_001013955.1	ILMN_1358091	0004010673	S	1168	CTTACTGGTAGCAAGGAGACTGCTAAAGACCCAGCTAACAAACTGAAGCA	X	-	7982175-7982224	Xq12	Rattus norvegicus ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae) (Ube2a), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein, and a substrate lysine residue. This function may be performed alone or in conjunction with an E3, ubiquitin-like protein ligase [goid 19787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643376-S	ILMN_67738	HSPA4L_PREDICTED	XM_215549.4	XM_215549.4		294993	109464711	XM_215549.4	Hspa4l_predicted	XP_215549.4	ILMN_1365783	0005690142	S	3851	GCTAAAGCACTGTTGACCTGCTCAGGTGTGCATCTGTGATGCTGACAGCC	2	+	127750728-127750777	2q26	PREDICTED: Rattus norvegicus heat shock 70kDa protein 4-like (predicted) (Hspa4l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639295-S	ILMN_288868	MAP4K1_PREDICTED	XM_001074916.1	XM_001074916.1		292763	109461587	XM_001074916.1	Map4k1_predicted	XP_001074916.1	ILMN_1371205	0006510537	S	2659	CACGGATGACCCTACCGCCCCCAGCAACCTCTACATCCAGGAATGAACCA				1q21	PREDICTED: Rattus norvegicus mitogen activated protein kinase kinase kinase kinase 1 (predicted) (Map4k1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656032-S	ILMN_276063	ZFP2	XM_001072183.1	XM_001072183.1		497897	109490652	XM_001072183.1	Zfp2	XP_001072183.1	ILMN_1370117	0006130170	S	1071	GGTCTGTGGAAAGCATTTCACTGGAAGATCATCCCTCACTGTACACCAAG					PREDICTED: Rattus norvegicus zinc finger protein 2 (Zfp2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718314-S	ILMN_292731	LOC501361	XM_001075605.1	XM_001075605.1		501361	109515573	XM_001075605.1	LOC501361	XP_001075605.1	ILMN_1356598	0001980154	S	1105	TGACCAACATCCTGAATGAAAACAGCACTTGAGAGACATGGGGGACCGCC					PREDICTED: Rattus norvegicus hypothetical LOC501361 (LOC501361), mRNA.					
Rattus norvegicus	RefSeq	GI_62652588-S	ILMN_53483	LOC500891	XM_576292.1	XM_576292.1		500891	62652588	XM_576292.1	LOC500891	XP_576292.1	ILMN_1370436	0001780605	S	1533	CTTGGGCACCACAGACTCAGCAAAGTCAAGCTCCAACCACGTGACCCTCC					PREDICTED: Rattus norvegicus similar to FLJ43860 protein (LOC500891), mRNA.					
Rattus norvegicus	RefSeq	GI_62665320-S	ILMN_277081	CDYL2_PREDICTED	XM_001078221.1	XM_001078221.1		292044	109508955	XM_001078221.1	Cdyl2_predicted	XP_001078221.1	ILMN_1349721	0002690039	S	2011	GGCCTGGCTTCAATCTTCTCTCCAATGCAACTCGGCGTGACTCTTAGGGC				19q12	PREDICTED: Rattus norvegicus chromodomain protein, Y chromosome-like 2 (predicted) (Cdyl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666695	ILMN_67450	LOC501541	XM_576942.1	XM_576942.1		501541	62666695	XM_576942.1	LOC501541	XP_576942.1	ILMN_1650740	0003520278	S	850	AAACAGGAGGGGATTAGGGTAGAATGGGGAGAGACTTGGGGAGACAGCAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501541), mRNA.					
Rattus norvegicus	RefSeq	GI_57164054-S	ILMN_301069	V1RF4	NM_001009522.1	NM_001009522.1		494242	57164054	NM_001009522.1	V1rf4	NP_001009522.1	ILMN_1365377	0000050593	S	778	CCCAGCTGGATTCTAGTGAATGTGGCTGCAATGTCTGCTTCGTTTTTCCC	1	+	58682582-58682631	1q12	Rattus norvegicus vomeronasal 1 receptor, F4 (V1rf4), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646065-S	ILMN_294830	H13_PREDICTED	XM_001062255.1	XM_001062255.1		311545	109471059	XM_001062255.1	H13_predicted	XP_001062255.1	ILMN_1371068	0003450110	S	1006	CACCCACACCTACTTCTACACCAGCTTCGCTGCCTACATCTTCGGCCTGG				3q41	PREDICTED: Rattus norvegicus histocompatibility 13 (predicted) (H13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660670-S	ILMN_275428	RGD1560394_PREDICTED	XM_001060644.1	XM_001060644.1		289728	109500779	XM_001060644.1	RGD1560394_predicted	XP_001060644.1	ILMN_1368748	0003360162	S	325	CCTTCAGGACCTACGGAAAACCGCCTACAGCCTGGACGCACGGACGGAGA				14q21	PREDICTED: Rattus norvegicus RGD1560394 (predicted) (RGD1560394_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556843-S	ILMN_272172	GGN	NM_001013065.1	NM_001013065.1		292765	61556843	NM_001013065.1	Ggn	NP_001013083.1	ILMN_1374310	0005910072	S	2021	TCTGGAGATGGCCCTCGAGAACCGAATATGGCTCCGGTGACTGACAGCAG	1	+	84307002-84307051	1q21	Rattus norvegicus gametogenetin (Ggn), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660324-S	ILMN_62968	LOC498346	XM_573579.1	XM_573579.1		498346	62660324	XM_573579.1	LOC498346	XP_573579.1	ILMN_1354372	0005360014	S	1378	AAGCCCAACATAAGGAGGCAAGCTATACCCTAGAAGAAGCAAGAAACTAG					PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC498346), mRNA.					
Rattus norvegicus	RefSeq	GI_62666898-S	ILMN_292724	RGD1560904_PREDICTED	XM_001061659.1	XM_001061659.1		302744	109511880	XM_001061659.1	RGD1560904_predicted	XP_001061659.1	ILMN_1358536	0002120671	S	1324	GAGGCTCAGTCTAAAGTCAGGCCTGTCGACTCCTCTCACAAAGGTGAGGC				Xq22	PREDICTED: Rattus norvegicus similar to melanoma antigen family B, 2 (predicted) (RGD1560904_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652633	ILMN_262996	RGD1565055_PREDICTED	XM_001074724.1	XM_001074724.1		362938	109482458	XM_001074724.1	RGD1565055_predicted	XP_001074724.1	ILMN_1651082	0001190279	S	4969	AGGAAGAAGATGGAGAGGTGGCTCTGGTGCTCCTTGGCAGGCCCTCACCT				7q34	PREDICTED: Rattus norvegicus similar to PDZ-domain protein scribble (predicted) (RGD1565055_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647529	ILMN_48193	LOC502800	XM_578299.1	XM_578299.1		502800	62647529	XM_578299.1	LOC502800	XP_578299.1	ILMN_1649876	0006450070	S	310	TACTGTCTACAGGCTTATAGTGCTCCTCCCACAGTGATTCAGGCCATGAC					PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502800), mRNA.					
Rattus norvegicus	RefSeq	GI_62638527-S	ILMN_54070	RGD1560015_PREDICTED	XM_574311.2	XM_574311.2		499018	109457731	XM_574311.2	RGD1560015_predicted	XP_574311.1	ILMN_1353675	0004610010	S	90	GTGCCATCCTGTGGAAGAACCATGAAGCACTACGAGGTGGATGCAAAGAC	1	-	41483931-41483960:41483961-41483980	1q11	PREDICTED: Rattus norvegicus similar to glycoprotein, synaptic 2 (predicted) (RGD1560015_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454289-S	ILMN_281612	MGC73003	NM_198777.1	NM_198777.1		361728	38454289	NM_198777.1	MGC73003	NP_942072.1	ILMN_1367786	0000840068	S	1000	CTTTAAGGCTATGGTTCAGCCTTTAGGTAGCATCGTCTCAGCCCAGGCCC	1	-	213060719-213060768	1q43	Rattus norvegicus Unknown (protein for MGC:73003) (MGC73003), mRNA.					
Rattus norvegicus	RefSeq	GI_47576152-S	ILMN_295781	OLR1372	NM_214826.1	NM_214826.1		287083	47576152	NM_214826.1	Olr1372	NP_999991.1	ILMN_1370805	0001690750	S	780	CAACCCTGTATCTTCCCATTCATCTGAGAAGGACACTGCAGCAACTGTGC	10	-	12441679-12441728	10q12	Rattus norvegicus olfactory receptor 1372 (Olr1372), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-12442508-12441579_ORF; Olr1372	ratchr10-12442508-12441579_ORF; Olr1372
Rattus norvegicus	RefSeq	GI_62664580-S	ILMN_65628	LOC502173	XM_577630.1	XM_577630.1		502173	62664580	XM_577630.1	LOC502173	XP_577630.1	ILMN_1356012	0004540022	S	643	GGTTGGAGGCGATGAAGGATGGAGTTTTGGCAACTGTTCCCGTAGTGGGC					PREDICTED: Rattus norvegicus similar to CDNA sequence BC023105 (LOC502173), mRNA.					
Rattus norvegicus	RefSeq	GI_62645868-S	ILMN_56564	LOC366191	XM_345433.2	XM_345433.2		366191	62645868	XM_345433.2	LOC366191	XP_345434.2	ILMN_1355611	0006520167	S	37	AAAAAAGTGGGGCACGGGAGGACTGTTCTGCCGTCAACGAAGTGGTGACC				3q36	PREDICTED: Rattus norvegicus similar to ribosomal protein L31 (LOC366191), mRNA.					
Rattus norvegicus	RefSeq	GI_62665549-S	ILMN_54668	RT1-N2	XM_346594.2	XM_346594.2		360323	62665549	XM_346594.2	RT1-N2	XP_346595.2	ILMN_1368544	0000060390	S	998	GAAGGCAGGTGAAAGAGGAAGGCACGACACCAGGAAGCAGATGGAGACAG					PREDICTED: Rattus norvegicus RT1 class Ib gene, H2-TL-like, grc region(N2) (RT1-N2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_40254765-S	ILMN_279496	GABARAP	NM_172036.2	NM_172036.2		58974	40254765	NM_172036.2	Gabarap	NP_742033.1	ILMN_1358271	0005050019	S	687	CCCTTTCTAACTGCCCACTGGGCTCAGAACCCCAATAAACCCTTCCTTTC	10	+	56840570-56840619	10q24	Rattus norvegicus GABA(A) receptor-associated protein (Gabarap), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding an autophagic vacuole, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered [goid 421] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; The smooth endoplasmic reticulum (ER) has with no ribosomes attached to it. The smooth is the recipient of the proteins synthesized in the rough ER. Those proteins to be exported are passed to the Golgi complex, the resident proteins are returned to the rough ER and the lysosomal proteins after phosphorylation of their mannose residues are passed to the lysosomes. Glycosylation of the glycoproteins also continues. The smooth ER is the site of synthesis of lipids, including the phospholipids. The membranes of the smooth ER also contain enzymes that catalyze a series of reactions to detoxify both lipid-soluble drugs and harmful products of metabolism. Large quantities of certain compounds such as phenobarbital cause an increase in the amount of the smooth ER [goid 5790] [evidence ISS]; The smooth endoplasmic reticulum (ER) has with no ribosomes attached to it. The smooth is the recipient of the proteins synthesized in the rough ER. Those proteins to be exported are passed to the Golgi complex, the resident proteins are returned to the rough ER and the lysosomal proteins after phosphorylation of their mannose residues are passed to the lysosomes. Glycosylation of the glycoproteins also continues. The smooth ER is the site of synthesis of lipids, including the phospholipids. The membranes of the smooth ER also contain enzymes that catalyze a series of reactions to detoxify both lipid-soluble drugs and harmful products of metabolism. Large quantities of certain compounds such as phenobarbital cause an increase in the amount of the smooth ER [goid 5790] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IEA]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence IEA]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence IEA]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62642745-S	ILMN_59094	AP3B1_PREDICTED	XM_226666.4	XM_226666.4		309969	109464262	XM_226666.4	Ap3b1_predicted	XP_226666.4	ILMN_1359820	0002900056	S	3982	TCCTCAATCCACGGGGCATCTCCTCTGCCCGCCGACATCTTTTGACCTCA	2	+	24872435-24872484	2q12	PREDICTED: Rattus norvegicus adaptor-related protein complex 3, beta 1 subunit (predicted) (Ap3b1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978784-S	ILMN_274788	HBEGF	NM_012945.1	NM_012945.1		25433	6978784	NM_012945.1	Hbegf	NP_037077.1	ILMN_1357783	0001500072	S	1457	GATGCCCCTGTAGCAGAGTATCCCAGGGTGGGTTGTGTATGGTCGGAGTG	18	-	29143609-29143658	18p11	Rattus norvegicus heparin-binding EGF-like growth factor (Hbegf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence TAS]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence TAS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IDA]; The migration of epithelial cells along or through a wound gap to reestablish a continuous epithelium [goid 35313] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin [goid 51545] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of keratinocyte migration [goid 51549] [evidence ISS]	Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]	Hb-egf; GFHB; Hegfl; Dtr	Hb-egf; GFHB; Hegfl; Dtr
Rattus norvegicus	RefSeq	GI_62656234-S	ILMN_55560	LOC303222	XM_220588.3	XM_220588.3		303222	62656234	XM_220588.3	LOC303222	XP_220588.3	ILMN_1365604	0003450102	S	2416	TCGGCTTCAAGTCCACAGTCCACAGAGCACCCCATGTTAGACGGCATGTC					PREDICTED: Rattus norvegicus similar to KIAA0672 gene product (predicted) (LOC303222), mRNA.					
Rattus norvegicus	RefSeq	GI_62647113-S	ILMN_51060	LOC500095	XM_575446.1	XM_575446.1		500095	62647113	XM_575446.1	LOC500095	XP_575446.1	ILMN_1362525	0004590347	S	447	TCAAGTCTGTAGAGCCGGGTGACTCTGCTGTGTATCTCTGTGCCAGCAGC					PREDICTED: Rattus norvegicus similar to T-cell receptor beta chain V region 86T1 precursor (LOC500095), mRNA.					
Rattus norvegicus	RefSeq	GI_62646200-S	ILMN_50179	LOC502687	XM_578184.1	XM_578184.1		502687	62646200	XM_578184.1	LOC502687	XP_578184.1	ILMN_1361343	0002060167	S	946	GTGGTTCCACCCTTTTCCCTGGCTTTGTGGAGCGCATGAACCTGGAGCTC					PREDICTED: Rattus norvegicus similar to C20orf134 (LOC502687), mRNA.					
Rattus norvegicus	RefSeq	GI_38454257-S	ILMN_283579	ARHGAP27	NM_198759.1	NM_198759.1		303583	38454257	NM_198759.1	Arhgap27	NP_942054.1	ILMN_1371594	0007100520	S	2540	CCATGGTGTTCCAGAACCAGGTGGTAGAGCTCATCCTACATCAGTGCGCA	10	-	92522566-92522615	10q32.1	Rattus norvegicus Rho GTPase activating protein 27 (Arhgap27), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IMP]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that activates or increases the activity of the GTPase Cdc42 [goid 43089] [evidence IDA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IDA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IDA]; Increases the rate of GTP hydrolysis by a GTPase of the Rac family [goid 30675] [evidence IDA]	CAMGAP1; Arhgap15	CAMGAP1; Arhgap15
Rattus norvegicus	RefSeq	GI_58865639-A	ILMN_282467	UTP3	NM_001012036.1	NM_001012036.1		305258	58865639	NM_001012036.1	Utp3	NP_001012036.1	ILMN_1376286	0000060086	S	1473	CCGAAGAGCCAAAATCCGAAGACGAGGCCAGGTTCGTGAAGTTCGTAGAG	14	-	21096091-21096140	14p22	Rattus norvegicus UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) (Utp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins [goid 32040] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662124-S	ILMN_66161	LOC502039	XM_577471.1	XM_577471.1		502039	62662124	XM_577471.1	LOC502039	XP_577471.1	ILMN_1360805	0002340181	S	349	CCTGTGTCACAGGCCTCCCAGGGCAGCGTCTGCCAGTTGACATAGAATGA					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain precursor V region (3.1) - mouse (fragment) (LOC502039), mRNA.					
Rattus norvegicus	RefSeq	GI_13929125-S	ILMN_295157	GALNT5	NM_031796.1	NM_031796.1		83627	13929125	NM_031796.1	Galnt5	NP_113984.1	ILMN_1349069	0001780731	S	3108	TGGCCTTTGGAAGTGTCTTGTGTCCCACCCTGCATTGGGGTGCATACTGC	3	+	39814206-39814255	3q21	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) (Galnt5), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. Catalyzes of the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis [goid 4653] [evidence ISS]; Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981547-S	ILMN_288551	SLC2A2	XM_001063900.1	XM_001063900.1		25351	109466465	XM_001063900.1	Slc2a2	XP_001063900.1	ILMN_1363292	0004670402	S	2253	GGCTGGCAAGGCTCACACTCAAACTGACGTCTCTGTTACCCACCTCGGTT				2q24	PREDICTED: Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 2 (Slc2a2), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IEA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	 [goid 7587] [evidence IMP]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of fructose into, out of, within or between cells. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey [goid 15755] [evidence IEP]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEP]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IDA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]; The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute [goid 55085] [evidence IEA]	Interacting selectively with the insulin receptor [goid 5158] [evidence IPI]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEP]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IDA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other [goid 5355] [evidence IEA]; Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other [goid 22891] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649456-S	ILMN_52626	RGD1566001_PREDICTED	XM_575888.2	XM_575888.2		500527	109475346	XM_575888.2	RGD1566001_predicted	XP_575888.1	ILMN_1373214	0006940142	S	745	GGACCACCTGAGCCATCAGAAGATGACAGTGCTAAGCAGGGCTTTGAGGC	5	-	136414660-136414709	5q36	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 4, Brigham & Womens Genetics 0951 expressed (predicted) (RGD1566001_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642247-S	ILMN_55349	LOC499355	XM_574667.1	XM_574667.1		499355	62642247	XM_574667.1	LOC499355	XP_574667.1	ILMN_1357710	0003840050	S	536	GATGCTGGAGGACTTCAAGAAAGACATGAGCACACTTAGGGAAACACAGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499355), mRNA.					
Rattus norvegicus	RefSeq	GI_19923690-S	ILMN_287874	AMD1	NM_031011.2	NM_031011.2		81640	19923690	NM_031011.2	Amd1	NP_112273.2	ILMN_1352980	0001230671	S	2816	GAGCTGGGTCTTGTAACCCAGTAGATTTTGGCTTGAGGTCTGACTCCCCC	20	-	44452721-44452770	20q12	Rattus norvegicus adenosylmethionine decarboxylase 1 (Amd1), mRNA.		The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups [goid 6595] [evidence IDA]; The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging [goid 6597] [evidence IDA]; The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging [goid 6597] [evidence IEA]; The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging [goid 6597] [evidence ISS]; The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane [goid 8295] [evidence IDA]; The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane [goid 8295] [evidence IEA]; The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane [goid 8295] [evidence ISS]	Catalysis of the reaction: S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt + CO2 [goid 4014] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt + CO2 [goid 4014] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt + CO2 [goid 4014] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]	Amd1a; AMD1B; Amd1b	Amd1a; AMD1B; Amd1b
Rattus norvegicus	RefSeq	GI_57528330-S	ILMN_279429	MAD2L1BP	NM_001009699.1	NM_001009699.1		316237	57528330	NM_001009699.1	Mad2l1bp	NP_001009699.1	ILMN_1351104	0005900064	S	982	CAAGCAAAGCCCTCGAATTGATGATTGACTCCCAGAAGCCCCTGTGCCAG	9	+	10401249-10401298	9q12	Rattus norvegicus MAD2L1 binding protein (Mad2l1bp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process involved in the progression from anaphase/telophase to G1 that is associated with a conversion from high to low mitotic CDK activity [goid 7096] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109107	MGC109107
Rattus norvegicus	RefSeq	Rn.3659	ILMN_301757	TPST2	NM_001008508.1	NM_001008508.1		288719	56606073	NM_001008508.1	Tpst2	NP_001008508.1	ILMN_1530383	0006840687	S	1600	TCTCCTTGACTGGACGCTGAACTCAAAGGATCTATTTAAGAGTTTAATAT	19	+	14297386-14297435	19p11	Rattus norvegicus tyrosylprotein sulfotransferase 2 (Tpst2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + protein tyrosine = adenosine 3',5'-bisphosphate + protein tyrosine-O-sulfate [goid 8476] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105657	MGC105657
Rattus norvegicus	RefSeq	GI_56606073-S	ILMN_301757	TPST2	NM_001008508.1	NM_001008508.1		288719	56606073	NM_001008508.1	Tpst2	NP_001008508.1	ILMN_1362370	0002030040	S	1430	CTGGGCAACACCGAGGAGGGAGAGACTACTTCGGTTTCAGAGACTTGGGG	19	+	14297216-14297265	19p11	Rattus norvegicus tyrosylprotein sulfotransferase 2 (Tpst2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + protein tyrosine = adenosine 3',5'-bisphosphate + protein tyrosine-O-sulfate [goid 8476] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105657	MGC105657
Rattus norvegicus	RefSeq	GI_62659530-S	ILMN_55214	LOC498256	XM_573480.1	XM_573480.1		498256	62659530	XM_573480.1	LOC498256	XP_573480.1	ILMN_1362052	0006200017	S	882	GAGGAGGACACCGACGAGGAGATGGAAACCGGGAACGTGGCAAACCTCAT				13q21	PREDICTED: Rattus norvegicus similar to IER5 (LOC498256), mRNA.					
Rattus norvegicus	RefSeq	GI_62663783-S	ILMN_265128	RGD1562954_PREDICTED	XM_001062695.1	XM_001062695.1		307096	109506057	XM_001062695.1	RGD1562954_predicted	XP_001062695.1	ILMN_1356188	0001570463	S	1235	CAGACTGAGCTGCCTGACCAGACTCTTTCATCCAGAACTGGGTCCACCAG				17q12.3	PREDICTED: Rattus norvegicus similar to aldo-keto reductase family 1, member C12 (predicted) (RGD1562954_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62945311	ILMN_271807	CXCL16	NM_001017478.1	NM_001017478.1		497942	62945311	NM_001017478.1	Cxcl16	NP_001017478.1	ILMN_1530471	0001660458	S	1235	CATCTGCCCTCGTCTACTTTCATAAATAAGGTATAAATTTTCAGGTTTTT	10	-	57296548-57296597	10q24	Rattus norvegicus chemokine (C-X-C motif) ligand 16 (Cxcl16), mRNA.			Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656358-S	ILMN_271807	CXCL16	NM_001017478.1	NM_001017478.1		497942	62945311	NM_001017478.1	Cxcl16	NP_001017478.1	ILMN_1366721	0000580647	S	1577	GTGGTCCAAAAGTGCAGTCAGAGGTGGAGTGTAAAGTTCGAGGTTCAACC	10	-	57296206-57296255	10q24	Rattus norvegicus chemokine (C-X-C motif) ligand 16 (Cxcl16), mRNA.			Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence ISS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_13540660-S	ILMN_282582	BMPR1A	NM_030849.1	NM_030849.1		81507	13540660	NM_030849.1	Bmpr1a	NP_110476.1	ILMN_1373335	0000770021	S	3057	CTGGTCCCTAACTTGTGAAGACAAAGAGGCAGAAGTACCCAGTCTACCAC	16	-	10061986-10062035	16p16	Rattus norvegicus bone morphogenetic protein receptor, type IA (Bmpr1a), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process by which the Mullerian ducts, primordia of the oviducts, uterus and upper vagina, undergo regression in male embryos [goid 1880] [evidence ISS]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation [goid 7398] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The establishment, maintenance and elaboration of the dorsal/ventral axis [goid 9950] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; The process whose specific outcome is the progression of the mesendoderm over time, from its formation to the mature structure. In animal embryos, mesendoderm development gives rise to both mesoderm and endoderm tissues [goid 48382] [evidence ISS]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50768] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651035-S	ILMN_283618	ZFYVE1_PREDICTED	XM_001056518.1	XM_001056518.1		299188	109479616	XM_001056518.1	Zfyve1_predicted	XP_001056518.1	ILMN_1364403	0002850025	S	2787	GCCACAACTGCCGCAAGGAGTTCAGTGTCAAGCTCTCCAAGCACCACTGC				6q24	PREDICTED: Rattus norvegicus zinc finger, FYVE domain containing 1 (predicted) (Zfyve1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705502-S	ILMN_268504	ACSBG1	NM_134389.1	NM_134389.1		171410	19705502	NM_134389.1	Acsbg1	NP_599216.1	ILMN_1370682	0002370195	S	2374	CCCAGAGAAGGACTGCTCACTTTGGCCTCGGGTCCAGGCAGATTTACAAG	8	-	58156486-58156535	8q24	Rattus norvegicus acyl-CoA synthetase bubblegum family member 1 (Acsbg1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater [goid 38] [evidence ISS]; The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence IMP]; The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IMP]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + a very-long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; very-long-chain fatty acids have chain lengths of greater than C18 [goid 31957] [evidence ISS]	Lpd; Grlacs	Lpd; Grlacs
Rattus norvegicus	RefSeq	GI_56605643-S	ILMN_277318	TFB2M	NM_001008293.1	NM_001008293.1		289307	56605643	NM_001008293.1	Tfb2m	NP_001008294.1	ILMN_1368392	0006650451	S	1782	CACTTAGAATGTGCATTGATTTGGGCAGACGTGGTGGTGCAAGTCCCAGG	13	-	95228755-95228804	13q26	Rattus norvegicus transcription factor B2, mitochondrial (Tfb2m), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically [goid 154] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a mitochondrial DNA template, usually by a specific mitochondrial RNA polymerase [goid 6390] [evidence IEA]; The synthesis of RNA from a mitochondrial DNA template, usually by a specific mitochondrial RNA polymerase [goid 6390] [evidence ISS]; The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically [goid 154] [evidence IEA]	Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor [goid 179] [evidence IEA]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence IEA]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule [goid 8649] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor [goid 179] [evidence IEA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule [goid 8649] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650804-S	ILMN_55371	LOC500669	XM_576046.1	XM_576046.1		500669	62650804	XM_576046.1	LOC500669	XP_576046.1	ILMN_1369744	0001660438	S	470	TGATGAGATCTGTCACCACTGGGGAGGCAACGTCCTGGGTCCTAAGTCTG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC500669), mRNA.					
Rattus norvegicus	RefSeq	GI_62648676-S	ILMN_58480	RGD1564940_PREDICTED	XM_575773.2	XM_575773.2		500411	109474702	XM_575773.2	RGD1564940_predicted	XP_575773.1	ILMN_1361346	0002320129	S	1057	GTTGGTCCCCGCAAGGTTAAGCTCAGTTTGCTTTAGAGGGTCTTTTTAAG	5	+	26398003-26398038:26398039-26398052	5q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3000004N20 (predicted) (RGD1564940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855374-S	ILMN_282271	CYP2G1	XM_001077589.1	XM_001077589.1		25251	109461510	XM_001077589.1	Cyp2g1	XP_001077589.1	ILMN_1354124	0005130136	S	1679	CTCGGTTTCGGAGAGCCCTGAATTTCTCAACCTTGGTCTCGGTGGGCAGC				1q21	PREDICTED: Rattus norvegicus cytochrome P450, subfamily 2G, polypeptide 1 (Cyp2g1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence TAS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642037-S	ILMN_263912	RGD1560242_PREDICTED	XM_001078678.1	XM_001078678.1		499334	109463697	XM_001078678.1	RGD1560242_predicted	XP_001078678.1	ILMN_1368038	0005720446	S	530	CCATAGTCCACAGGAAGTGCCGTTCTCAGTTCACAGACCTCAATGGCTCC				1q51	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700028P14 (predicted) (RGD1560242_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652009-S	ILMN_290557	RGD1565429_PREDICTED	XR_009598.1	XR_009598.1		314733	109481838	XR_009598.1	RGD1565429_predicted		ILMN_1356682	0001940451	S	426	AGAGATCTGGACAGGATCGCCGGACAGGATCGCCGGACAGGAGGCAGCTG				7q13	PREDICTED: Rattus norvegicus similar to ribosomal protein S19 (predicted) (RGD1565429_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644113-S	ILMN_279578	BCAS2_PREDICTED	XM_001064236.1	XM_001064236.1		295334	109467299	XM_001064236.1	Bcas2_predicted	XP_001064236.1	ILMN_1362014	0001850609	S	708	ACTTCTGAGGACGTGGGCAGCAAGGAATCGAAGTGAGCTCCACGAGACTC				2q34	PREDICTED: Rattus norvegicus breast carcinoma amplified sequence 2 (predicted) (Bcas2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928915-S	ILMN_278511	CAMKK1	NM_031662.1	NM_031662.1		60341	13928915	NM_031662.1	Camkk1	NP_113850.1	ILMN_1351458	0006900162	S	3209	CACACAGGAAAAGCTCGGAGTTGGGTGGCTGGCTCATTGTCCCCAGCAGA	10	+	59932139-59932188	10q24	Rattus norvegicus calcium/calmodulin-dependent protein kinase kinase 1, alpha (Camkk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642749-S	ILMN_280216	WDR41_PREDICTED	XM_001067353.1	XM_001067353.1		361879	109465918	XM_001067353.1	Wdr41_predicted	XP_001067353.1	ILMN_1353875	0004150056	S	2613	GGAGGAGAATGAGAAGGGCTGAGAGGACGACCCGGTGACCATGTTAGGAA				2q12	PREDICTED: Rattus norvegicus WD repeat domain 41 (predicted) (Wdr41_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664036-S	ILMN_52569	MIB1_PREDICTED	XM_226175.4	XM_226175.4		307594	109506297	XM_226175.4	Mib1_predicted	XP_226175.4	ILMN_1359374	0004060112	S	3793	TGCCAGCTCTGTGGAGACCGAATGAGTGAATGCCCGATTTGTCGCAAGGC	18	+	2224645-2224694	18p13	PREDICTED: Rattus norvegicus mindbomb homolog 1 (Drosophila) (predicted) (Mib1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758103-S	ILMN_288758	PGLYRP1	NM_053373.1	NM_053373.1		84387	16758103	NM_053373.1	Pglyrp1	NP_445825.1	ILMN_1351496	0003940301	S	271	CTTCCTCATTGGAGAGGATGGTCATGTCTACGAAGGCCGAGGCTGGACCA	1	+	78239525-78239574	1q21	Rattus norvegicus peptidoglycan recognition protein 1 (Pglyrp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls [goid 9253] [evidence IEA]; The series of events in which a stimulus from a bacterium is received and converted into a molecular signal [goid 16045] [evidence ISS]; The series of events in which a stimulus from a bacterium is received and converted into a molecular signal [goid 16045] [evidence IEA]; Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 45187] [evidence IEP]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell-wall glycopeptides [goid 8745] [evidence IEA]; Combining with a peptidoglycan to initiate a change in cell activity [goid 16019] [evidence TAS]; Combining with a peptidoglycan to initiate a change in cell activity [goid 16019] [evidence ISS]; Combining with a peptidoglycan to initiate a change in cell activity [goid 16019] [evidence IEA]	Pglyrp; Pgrp	Pglyrp; Pgrp
Rattus norvegicus	RefSeq	GI_34935574-S	ILMN_59718	LOC366752	XM_345739.1	XM_345739.1		366752	34935574	XM_345739.1	LOC366752	XP_345740.1	ILMN_1368429	0004050670	S	148	GCTACAACATGCACTGGATTCGCCAGGCTCCAAAGAAGGGGCTGGAATGG				6q33	PREDICTED: Rattus norvegicus similar to IGHM protein (LOC366752), mRNA.					
Rattus norvegicus	RefSeq	GI_62646146-S	ILMN_47730	LOC502666	XM_578162.1	XM_578162.1		502666	62646146	XM_578162.1	LOC502666	XP_578162.1	ILMN_1371099	0006180035	S	280	CCCTGTCCCAGGCAGCTCCTTATGCTGAACAATTGCTGGTGACTGCTTTG					PREDICTED: Rattus norvegicus similar to 40S ribosomal small subunit protein S10 (LOC502666), mRNA.					
Rattus norvegicus	RefSeq	GI_62665953-S	ILMN_51108	LOC499428	XM_579967.1	XM_579967.1		499428	62665953	XM_579967.1	LOC499428	XP_579967.1	ILMN_1367063	0001050546	S	2017	GTCAGGCAGAGCAACCCGCTTCTTAGCCCGTGTCCCACTTAAACTGAGCT					PREDICTED: Rattus norvegicus LOC499428 (LOC499428), mRNA.					
Rattus norvegicus	RefSeq	GI_62661593-S	ILMN_276574	RGD1560876_PREDICTED	XM_001063239.1	XM_001063239.1		364395	109502537	XM_001063239.1	RGD1560876_predicted	XP_001063239.1	ILMN_1358515	0002970373	S	1095	GCTTGGGGACGAAGTGTGGATGCAGGTGACAGGAGGAGAGAGGTTCAATG				15p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC48915 (predicted) (RGD1560876_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652986-A	ILMN_268280	NELL2	NM_031070.2	NM_031070.2		81734	77695932	NM_031070.2	Nell2	NP_112332.2	ILMN_1376769	0002230372	S	2393	CCTGCCTGGACGAGATGAACGTGGTTCGCTTCACTGGGTCTTCCTGGATC	7	-	133767976-133768025	7q35	Rattus norvegicus NEL-like 2 (chicken) (Nell2), mRNA.		The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27719322-S	ILMN_299422	MMP1B_PREDICTED	XM_001072313.1	XM_001072313.1		300338	109484206	XM_001072313.1	Mmp1b_predicted	XP_001072313.1	ILMN_1352146	0006760037	S	689	GTAGTAGTGGTCTGACCTTTGATGCTATAACGACATATCGGGGGGAGGTG				8q11	PREDICTED: Rattus norvegicus matrix metalloproteinase 1b (interstitial collagenase) (predicted) (Mmp1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540670-S	ILMN_264310	LECT1	NM_030854.1	NM_030854.1		81512	13540670	NM_030854.1	Lect1	NP_110481.1	ILMN_1372067	0003870068	S	1159	GCAAGAATTAGCACGAGAGTTGAGAACCAAAGAACCATGCCAAGGGACCG	15	-	60891370-60891419	15q12	Rattus norvegicus leukocyte cell derived chemotaxin 1 (Lect1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30948] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30948] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]		Chm-1; MGC156632	Chm-1; MGC156632
Rattus norvegicus	RefSeq	GI_62645217-S	ILMN_287755	RGD1561059_PREDICTED	XM_001060093.1	XM_001060093.1		502633	109470068	XM_001060093.1	RGD1561059_predicted	XP_001060093.1	ILMN_1375147	0005290066	S	691	GTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTT				3q21	PREDICTED: Rattus norvegicus similar to BC004636 protein (predicted) (RGD1561059_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646529-S	ILMN_67399	LOC311716	XM_230973.3	XM_230973.3		311716	62646529	XM_230973.3	LOC311716	XP_230973.3	ILMN_1352328	0006660341	S	4368	GCAGGGGCAGAGAAGGAAACCCAAAGGAAGACCCTGAAGTGGCAGGAGTC				3q43	PREDICTED: Rattus norvegicus similar to Protein KIAA1510 precursor (LOC311716), mRNA.					
Rattus norvegicus	RefSeq	GI_62654752-S	ILMN_50633	LOC301278	XM_236967.3	XM_236967.3		301278	62654752	XM_236967.3	LOC301278	XP_236967.3	ILMN_1349767	0000060044	S	51	GCTTTCAAGGTGTGGACTTGTAATTCACAGAACCTACAGCGGCACGTCCC					PREDICTED: Rattus norvegicus similar to OTTHUMP00000039916 (LOC301278), mRNA.					
Rattus norvegicus	RefSeq	GI_62665263-S	ILMN_269325	RGD1561758_PREDICTED	XM_001077096.1	XM_001077096.1		307970	109508865	XM_001077096.1	RGD1561758_predicted	XP_001077096.1	ILMN_1356666	0000380278	S	1507	TTGAACAGTAACTCAGTTTCTCAGGCCAGCTGTGCTCCCCCAGGGCAGCT				19q12	PREDICTED: Rattus norvegicus similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog) (predicted) (RGD1561758_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647734-S	ILMN_273125	RGD1561319_PREDICTED	XR_008964.1	XR_008964.1		500242	109473853	XR_008964.1	RGD1561319_predicted		ILMN_1358681	0006130022	S	1075	TCTGAGAAGGGCATGGGGTGCAGCTAGAACAGTGTAGGTTCGCTCGTAAC				4q34	PREDICTED: Rattus norvegicus similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (predicted) (RGD1561319_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659202-S	ILMN_51841	LOC297832	XM_232709.3	XM_232709.3		297832	62659202	XM_232709.3	LOC297832	XP_232709.3	ILMN_1362393	0006510402	S	3290	CAGCCTTACTGCCTATGGGTCAAATCTCATGGCCTTCCCACAAATACAGC				13p11	PREDICTED: Rattus norvegicus similar to contactin associated protein-like 5 isoform 1 (LOC297832), mRNA.					
Rattus norvegicus	RefSeq	GI_47058981-S	ILMN_264065	SPTB	NM_212522.1	NM_212522.1		314251	47058981	NM_212522.1	Sptb	NP_997687.1	ILMN_1354099	0003610097	S	6456	CAGGTCCACCATGCGGCCACGGAGAGAACATCCCCGGTCAGTTTTATGTC	6	-	99194490-99194539	6q24	Rattus norvegicus spectrin, beta, erythrocytic (Sptb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins [goid 8091] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639314	ILMN_273601	SIPA1L3	NM_001013066.1	NM_001013066.1		292771	61556846	NM_001013066.1	Sipa1l3	NP_001013084.1	ILMN_1650770	0006900053	S	2646	GAGCACTCACAGTGCAGCCCCCAGCCCCCAGAGATTCTCCAAAGGCAATA	1	-	84457352-84457401	1q21	Rattus norvegicus signal-induced proliferation-associated 1 like 3 (Sipa1l3), mRNA.				MGC109241	MGC109241
Rattus norvegicus	RefSeq	GI_62640868-A	ILMN_296649	TSKU	NM_001009965.2	NM_001009965.2		308843	71896550	NM_001009965.2	Tsku	NP_001009965.1	ILMN_1376612	0006840647	S	2372	AAGACTCTGTTCTGGGTGTGGGCTGGGGATCTTGGGAAGAAGCCAGTTGG	1	-	155611221-155611270	1q32	Rattus norvegicus tsukushin (Tsku), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577352-S	ILMN_277661	OLR425	NM_001000393.1	NM_001000393.1		296687	47577352	NM_001000393.1	Olr425	NP_001000393.1	ILMN_1361873	0006900079	S	603	ACTGGCTATATTCTTGGAGGGTGGGTTTCTCATGCTGGTCCCTTGTTCCC	3	-	16610736-16610785	3q11	Rattus norvegicus olfactory receptor 425 (Olr425), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr425	Olr425
Rattus norvegicus	RefSeq	GI_58219523-S	ILMN_276005	TMEM17	NM_001010961.1	NM_001010961.1		360985	58219523	NM_001010961.1	Tmem17	NP_001010961.1	ILMN_1350995	0007050324	S	1260	TCAGCTTTGTCCACTGGAATCTCACCGAGTGTGTCAACACCCCCTAGGAC	14	+	103167486-103167535	14q22	Rattus norvegicus transmembrane protein 17 (Tmem17), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_57164140-S	ILMN_288403	MTHFS	NM_001009349.1	NM_001009349.1		300886	57164140	NM_001009349.1	Mthfs	NP_001009349.1	ILMN_1358377	0000580402	S	2416	GACTTCCAGAACCTGCTGGCCGCTTAGGATTCAGAACAATCAAAAGCCAC	8	+	94107938-94107987	8q31	Rattus norvegicus 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) (Mthfs), mRNA.		The chemical reactions and pathways resulting in the formation of folic acid and its derivatives [goid 9396] [evidence IEA]	Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + 5-formyltetrahydrofolate = ADP + phosphate + 5,10-methenyltetrahydrofolate [goid 30272] [evidence IEA]	MGC95139	MGC95139
Rattus norvegicus	RefSeq	GI_8393816-S	ILMN_300831	MYO5B	NM_017083.1	NM_017083.1		25132	8393816	NM_017083.1	Myo5b	NP_058779.1	ILMN_1373346	0001780041	S	5794	CAAACCATGTTAGAGACCTGTGGGGAGCACTGAACTAAACAGCGGGGTGC	18	+	71580733-71580782	18q12.2-q12.3	Rattus norvegicus myosin Vb (Myo5b), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Myr6	Myr6
Rattus norvegicus	RefSeq	GI_62658209-A	ILMN_286328	TSSK2	NM_001012019.1	NM_001012019.1		304181	58865607	NM_001012019.1	Tssk2	NP_001012019.1	ILMN_1376972	0004480373	S	1035	CTGCTGGTAGCACCTGAGAATGAAGACAGGATGGAGGAGAGGCTGGCGGA	11	-	85074982-85075031	11q23	Rattus norvegicus testis-specific serine kinase 2 (Tssk2), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Stk22b	Stk22b
Rattus norvegicus	RefSeq	GI_47576220-S	ILMN_277338	OLR1330	NM_001000476.1	NM_001000476.1		300630	47576220	NM_001000476.1	Olr1330	NP_001000476.1	ILMN_1372255	0006370184	S	424	ACTGTGGCCACGTGGATGGGGAGCTGTCTGCATGCGTCTGTCCTCACATT	8	-	42886466-42886515	8q22	Rattus norvegicus olfactory receptor 1330 (Olr1330), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1330	Olr1330
Rattus norvegicus	RefSeq	GI_62649006-S	ILMN_302057	ACTL7B	NM_001025417.1	NM_001025417.1		313183	70794749	NM_001025417.1	Actl7b	NP_001020588.1	ILMN_1355499	0002230731	S	1219	GGCCTTCCAGCAGCTTTGGGTCAGCAAAGAAGAGTTTGAGGAGCGGGGCT	5	-	74646643-74646692	5q24	Rattus norvegicus actin-like 7b (Actl7b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657550-S	ILMN_272853	RGD1560030_PREDICTED	XM_001064250.1	XM_001064250.1		498038	109493765	XM_001064250.1	RGD1560030_predicted	XP_001064250.1	ILMN_1373954	0002320059	S	1054	ACTGCTACCTCAGCATGGGCCGGAGCCTTTCATGGGACAGTGGACATCGT				11p12	PREDICTED: Rattus norvegicus similar to colon carcinoma related protein (predicted) (RGD1560030_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655714-S	ILMN_275405	GLIS2_PREDICTED	XM_001077298.1	XM_001077298.1		302946	109489614	XM_001077298.1	Glis2_predicted	XP_001077298.1	ILMN_1360496	0002370019	S	1644	GGCAGTCCAGCCACCTACTGTGGGCTCATCCCTGACGAACAGAAACTCTT				10q12	PREDICTED: Rattus norvegicus GLIS family zinc finger 2 (predicted) (Glis2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642990-S	ILMN_48937	LOC365677	XM_345157.2	XM_345157.2		365677	62642990	XM_345157.2	LOC365677	XP_345158.2	ILMN_1373646	0001570059	S	169	TTGCCCGCGTTGATGAAGAAGACCCTGGCACCATCCAGGAAGAACGCCTG					PREDICTED: Rattus norvegicus similar to Myosin regulatory light chain 2-B, smooth muscle isoform (Myosin RLC-B) (LOC365677), mRNA.					
Rattus norvegicus	RefSeq	GI_56912242-S	ILMN_56014	PSENEN	NM_001008764.2	NM_001008764.2		292788	71896557	NM_001008764.2	Psenen	NP_001008764.1	ILMN_1374774	0001940161	S	111	TGAACTTAGAGCGGGTGTCCAATGAGGAGAAGTTGAACCTGTGCCGGAAG	1	-	85607975-85608024	1q21	Rattus norvegicus presenilin enhancer 2 homolog (C. elegans) (Psenen), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1312037	RGD1312037
Rattus norvegicus	RefSeq	GI_34872441-S	ILMN_300815	LOC691157	XM_001077034.1	XM_001077034.1		691157	109475807	XM_001077034.1	LOC691157	XP_001077034.1	ILMN_1356834	0001050170	S	1398	CAGGACCGTCTGGTTCAGCGTCGCACCCTGTCTTCCTAATGACAACCAGG	5	-	162768762-162768811	5q36	PREDICTED: Rattus norvegicus similar to PRAME family member DJ1198H6.2 (LOC691157), mRNA.					
Rattus norvegicus	RefSeq	GI_62645727-S	ILMN_50006	LOC502654	XM_578148.1	XM_578148.1		502654	62645727	XM_578148.1	LOC502654	XP_578148.1	ILMN_1350541	0000460446	S	573	CCCTGGGCACCTCTGACCGCTGACAAAATGTCCTGCCAACCTCTACTGGA				3q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L38 (LOC502654), mRNA.					
Rattus norvegicus	RefSeq	GI_62655044-S	ILMN_272214	TMEFF2_PREDICTED	XM_001064388.1	XM_001064388.1		363228	109487111	XM_001064388.1	Tmeff2_predicted	XP_001064388.1	ILMN_1363692	0002470025	S	1543	CTAGAGGGAGCATGTTTCCCAGTGGCCGGACAACCGACAGCTTGGACTAC				9q22	PREDICTED: Rattus norvegicus transmembrane protein with EGF-like and two follistatin-like domains 2 (predicted) (Tmeff2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661199-S	ILMN_64564	LOC498463	XM_573720.2	XM_573720.2		498463	109501405	XM_573720.2	LOC498463	XP_573720.2	ILMN_2039885	0001780255	S	549	CCCTAGAAGGAGGAATGGACTTGGAGAAGTGGGTGGAAGTTGGAGACTGG	15	+	19418124-19418173	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498463), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718590-S	ILMN_64564	LOC498463	XM_573720.2	XM_573720.2		498463	109501405	XM_573720.2	LOC498463	XP_573720.2	ILMN_1368773	0000360575	S	894	GGTGCAAAGATTGATAACACCTCCCGCATCTCAGTCCTTGTAACCGTTCC	15	+	19470939-19470988	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498463), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661177-S	ILMN_64564	LOC498463	XM_573720.2	XM_573720.2		498463	109501405	XM_573720.2	LOC498463	XP_573720.2	ILMN_1368962	0004730348	S	877	CCACCAGGAGCACTGAGGGTGCAAAGATTGATAACACCTCCCGCATCTCA	15	+	19470922-19470971	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498463), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981395-S	ILMN_283351	PRKAR1A	NM_013181.1	NM_013181.1		25725	6981395	NM_013181.1	Prkar1a	NP_037313.1	ILMN_1362304	0000130537	S	1309	TCTGCAGCGCCAAGTGGCCACTGGCTTCACAGCTTCTTGTCTCTGTATAC					Rattus norvegicus protein kinase, cAMP dependent regulatory, type I, alpha (Prkar1a), mRNA.	An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle in the female germline [goid 7143] [evidence IEP]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of meiosis [goid 45835] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence TAS]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	RIIA	RIIA
Rattus norvegicus	RefSeq	GI_62646027-S	ILMN_290843	CST7_PREDICTED	XM_001056457.1	XM_001056457.1		296257	109471011	XM_001056457.1	Cst7_predicted	XP_001056457.1	ILMN_1365619	0002850072	S	539	AGACCATGCACCGCCAACTGGACAACTGTGACTTCCAAACCAGCCCTGCC				3q41	PREDICTED: Rattus norvegicus cystatin F (leukocystatin) (predicted) (Cst7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641371-S	ILMN_280879	RGD1306730	NM_001039608.1	NM_001039608.1		309009	88853868	NM_001039608.1	RGD1306730	NP_001034697.1	ILMN_1364020	0000670538	S	402	TCCAGGAGAAGCAGGCTCCAGCAGCAGAAGAGCGTGAATGGGAACGAGCT	1	-	187950151-187950196:187950197-187950200	1q37	Rattus norvegicus similar to cDNA sequence BC025641 (RGD1306730), mRNA.				MGC125204	MGC125204
Rattus norvegicus	RefSeq	GI_62638237-S	ILMN_271663	RGD1563591_PREDICTED	XR_008742.1	XR_008742.1		365049	109460462	XR_008742.1	RGD1563591_predicted		ILMN_1364994	0002940519	S	570	TTCCTACCAAACTGGAGAGACTGGGGGGATCTCAGCAGGGGGAGGGCTAT				1p13	PREDICTED: Rattus norvegicus similar to Cofilin, non-muscle isoform (Cofilin-1) (predicted) (RGD1563591_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577684-S	ILMN_264906	OLR56	NM_001000130.1	NM_001000130.1		293205	47577684	NM_001000130.1	Olr56	NP_001000130.1	ILMN_1352059	0000780332	S	798	TGGGAGACGAGCTCCACCCTATGTGCATACTCTGATTGCCAACGCCTACC	1	-	160573496-160573545	1q32	Rattus norvegicus olfactory receptor 56 (Olr56), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr56	Olr56
Rattus norvegicus	RefSeq	GI_62643687	ILMN_59876	LOC310544	XM_227306.3	XM_227306.3		310544	62643687	XM_227306.3	LOC310544	XP_227306.3	ILMN_1649793	0006380021	S	1952	CCGTGGCCTTATTTCTCTCCTTGCTTCTGAGCTCGCACCAGCTGAAGCAG				2q33	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21159 (LOC310544), mRNA.					
Rattus norvegicus	RefSeq	GI_62718378-S	ILMN_56395	LOC363366	XM_343700.3	XM_343700.3		363366	109513461	XM_343700.3	LOC363366	XP_343701.2	ILMN_1369612	0006220154	S	273	CCCGTCTTCGCAAGGGTTTTGGGAAGGGGAACATCGATTCTGGAGAGACT	Un|NW_047883.1	-	2803886-2803935		PREDICTED: Rattus norvegicus hypothetical LOC363366 (LOC363366), mRNA.					
Rattus norvegicus	RefSeq	GI_62638204-S	ILMN_268093	RGD1564085_PREDICTED	XR_008525.1	XR_008525.1		308265	109460424	XR_008525.1	RGD1564085_predicted		ILMN_1365537	0002260129	S	3683	GGGCTCAGAGCAGCAGTCCGATGAAGACGATCAACACACAGGCTCAGATG				1p13	PREDICTED: Rattus norvegicus similar to LATS homolog 1 (predicted) (RGD1564085_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29126233-S	ILMN_300142	PSBPC1	NM_177482.1	NM_177482.1		309203	29126233	NM_177482.1	Psbpc1	NP_803435.1	ILMN_1350843	0002120309	S	223	TGTAGACCAGATGAGCAATGGAGACAGATTGGTAGTAGCAGAAACACTGG	1	-	212016630-212016632:212017492-212017538	1q43	Rattus norvegicus prostatic steroid binding protein C1 (Psbpc1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]	Pbpc1bs; Psbpc1	Pbpc1bs; Psbpc1
Rattus norvegicus	RefSeq	GI_62643897-S	ILMN_47814	SETDB1_PREDICTED	XM_227444.3	XM_227444.3		310668	62643897	XM_227444.3	Setdb1_predicted	XP_227444.3	ILMN_1366239	0000360687	S	4325	CCTCAGCCCCATCTTGACCTTCCAGGGAGATGTCATTTCCCAATGGCAAC					PREDICTED: Rattus norvegicus SET domain, bifurcated 1 (predicted) (Setdb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923935-S	ILMN_287004	VAMP3	NM_057097.1	NM_057097.1		29528	16923935	NM_057097.1	Vamp3	NP_476438.1	ILMN_1373041	0005360300	S	1364	GCAGCATCTGAAGCCTCACAAAGGCAACAGTCTGCACAGAGTTCTGGGAG	5	-	168190782-168190831	5q36	Rattus norvegicus vesicle-associated membrane protein 3 (Vamp3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence IEA]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]		MGC108618	MGC108618
Rattus norvegicus	RefSeq	GI_33636725-S	ILMN_295968	SERINC1	NM_182951.1	NM_182951.1		294421	33636725	NM_182951.1	Serinc1	NP_891996.1	ILMN_1358918	0000940292	S	1899	GTGGAGGTAAGCTGAGCAGTAGGCAAGAGCCTTCACAGAAAGTCACTGGT	20	-	36541979-36542028	20q11	Rattus norvegicus serine incorporator 1 (Serinc1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands [goid 6278] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. They are important constituents of cell membranes [goid 6658] [evidence IDA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The directed movement of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid, into, out of, within or between cells [goid 15825] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor [goid 51347] [evidence IDA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time [goid 3964] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the transfer of L-serine from one side of a membrane to the other. L-serine is the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 15194] [evidence IDA]	Tde2; Tde1l; LRRGT00191	Tde2; Tde1l; LRRGT00191
Rattus norvegicus	RefSeq	GI_62648488-S	ILMN_48951	LOC500379	XM_575737.1	XM_575737.1		500379	62648488	XM_575737.1	LOC500379	XP_575737.1	ILMN_1371531	0006520707	S	1286	GAGACCTTTGCTGACCCCAGCTTGCAGCCAGAATGTCAGTGGAACCTGTG					PREDICTED: Rattus norvegicus similar to Sulfonylurea receptor 2 (LOC500379), mRNA.					
Rattus norvegicus	RefSeq	GI_56961611-S	ILMN_300279	SPP2	NM_053577.1	NM_053577.1		94168	56961611	NM_053577.1	Spp2	NP_446029.1	ILMN_1371196	0000780594	S	536	GGGCGTCCACATCCGAGTCCAACAGCAGTGAGGAGATGATTTTTGGGGAC	9	+	87301871-87301905:87306833-87306847	9q35	Rattus norvegicus secreted phosphoprotein 2 (Spp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IPI]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]; The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis [goid 46849] [evidence IEA]		MGC108864	MGC108864
Rattus norvegicus	RefSeq	GI_47059182-S	ILMN_286227	BRD2	NM_212495.1	NM_212495.1		294276	47059182	NM_212495.1	Brd2	NP_997660.1	ILMN_1355507	0002060487	S	3388	TTTATTTAAGCTAGGTGGTAAGGCTGGGGGTGTAGCGCCGTGGTCCGCCC	20	+	4871578-4871627	20p12	Rattus norvegicus bromodomain containing 2 (Brd2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			Ring3	Ring3
Rattus norvegicus	RefSeq	GI_62665689-S	ILMN_287533	BTNL2	XM_001077327.1	XM_001077327.1		309620	109509813	XM_001077327.1	Btnl2	XP_001077327.1	ILMN_1374534	0001500673	S	1083	GGGTTCCACCCCACAGATCACCAGGGAGGTCTTGAAAGATGGAGGAACAC				20p12	PREDICTED: Rattus norvegicus butyrophilin-like 2 (MHC class II associated) (Btnl2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62649991-S	ILMN_281019	RGD1306186	NM_001024986.1	NM_001024986.1		298621	68163414	NM_001024986.1	RGD1306186	NP_001020157.1	ILMN_1358249	0006200333	S	1416	GCCTAAGAAGGTCGCCTTTGCTACAATGCCATGCTTTAGGTGTGATGGGC	5	-	162594099-162594148	5q36	Rattus norvegicus similar to RIKEN cDNA 4930569K13 (RGD1306186), mRNA.				MGC105679	MGC105679
Rattus norvegicus	RefSeq	GI_34881349-S	ILMN_49231	LOC302331	XM_228455.2	XM_228455.2		302331	34881349	XM_228455.2	LOC302331	XP_228455.2	ILMN_1356398	0002480142	S	8352	CGTGAGATGGTCCTCAGAAGTCCCGCACCACTCCGAAGCAATAACAGACG					PREDICTED: Rattus norvegicus similar to putative protein family member (XC177) (LOC302331), mRNA.					
Rattus norvegicus	RefSeq	GI_62662008-S	ILMN_271620	RGD1559579_PREDICTED	XR_009023.1	XR_009023.1		364448	109502836	XR_009023.1	RGD1559579_predicted		ILMN_1354063	0004060577	S	570	CTTGAGTGTGGCCAAGGAGAAACGACAGGAAGTCACAGAGGCCAGCTGCA				15q21	PREDICTED: Rattus norvegicus similar to Ski protein (predicted) (RGD1559579_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638954-I	ILMN_287549	LOC688243	XM_001081619.1	XM_001081619.1		688243	109518944	XM_001081619.1	LOC688243	XP_001081619.1	ILMN_1375305	0002230524	S	158	GAGGCAAAAAGGCAGCAGCCATACCAGCCAAAGAAGCAGTTAAACCAGCC					PREDICTED: Rattus norvegicus similar to Nucleolin (Protein C23) (LOC688243), mRNA.					
Rattus norvegicus	RefSeq	GI_62647696-S	ILMN_268922	ZFML_PREDICTED	XM_001073303.1	XM_001073303.1		312491	109473802	XM_001073303.1	Zfml_predicted	XP_001073303.1	ILMN_1349748	0002680148	S	5998	CCGAAGGCTGGATTTTTCTGCCCAATTTGCTCCCTCTTCTACTCAGGTGA				4q34	PREDICTED: Rattus norvegicus zinc finger, matrin-like (predicted) (Zfml_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078460-S	ILMN_295082	YDJC	NM_001013863.1	NM_001013863.1		287938	62078460	NM_001013863.1	Ydjc	NP_001013885.1	ILMN_1374635	0006760487	S	1192	GCCTGACTAACCCTGTTCCCAGGTCCTTTAGGCTGAGTAGAAGGCCGACC	11	-	85845656-85845705	11q23	Rattus norvegicus YdjC homolog (bacterial) (Ydjc), mRNA.					
Rattus norvegicus	RefSeq	GI_62543530-S	ILMN_286814	RAB24	NM_001015023.1	NM_001015023.1		361208	62543530	NM_001015023.1	Rab24	NP_001015023.1	ILMN_1350246	0004230538	S	1375	GGAGGCAGTGTTGGGCTGACTGTGGGCATGAGGAGGGATAAGGGCTGATT	17	+	15355169-15355218	17p14	Rattus norvegicus RAB24, member RAS oncogene family (Rab24), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC108835	MGC108835
Rattus norvegicus	RefSeq	GI_62658433-S	ILMN_49950	LOC498141	XM_573351.1	XM_573351.1		498141	62658433	XM_573351.1	LOC498141	XP_573351.1	ILMN_1357526	0006520717	S	3	AGAGGTATGTGAAGCGGAAGTGGCTGAAGACTGAGGGGAGCTGGGCCCGT					PREDICTED: Rattus norvegicus similar to CPSF4 protein (LOC498141), mRNA.					
Rattus norvegicus	RefSeq	GI_7710037-S	ILMN_301252	IL2RA	NM_013163.1	NM_013163.1		25704	7710037	NM_013163.1	Il2ra	NP_037295.1	ILMN_1370832	0003360088	S	1205	CATGTGTTGATGGGAGCTGCGATGGTGTGGTCACTTTTCGTGGAACACAC	17	-	78050660-78050709	17q12.3	Rattus norvegicus interleukin 2 receptor, alpha chain (Il2ra), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	An inflammatory response to an antigenic stimulus, which can be include any number of T cell or B cell epitopes [goid 2437] [evidence IMP]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IMP]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence IMP]; Any process that modulates the frequency, rate or extent of resting T cell proliferation [goid 46013] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation [goid 50672] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with interleukin-2 to initiate a change in cell activity [goid 4911] [evidence ISS]; Combining with interleukin-2 to initiate a change in cell activity [goid 4911] [evidence IPI]; Interacting selectively with interleukin-2 [goid 19976] [evidence ISS]	IL2RAC	IL2RAC
Rattus norvegicus	RefSeq	GI_34874320-S	ILMN_262372	LOC680475	XM_001057350.1	XM_001057350.1		680475	109485680	XM_001057350.1	LOC680475	XP_001057350.1	ILMN_1349182	0002340280	S	141	GCTCAGGCTATTTCGGAAGGAAAGTGTTGATCAAGGAGAAACCACACCAG	9	+	5881979-5882028	9q11	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC680475), mRNA.					
Rattus norvegicus	RefSeq	GI_62654639	ILMN_262372	LOC680475	XM_001057350.1	XM_001057350.1		680475	109485680	XM_001057350.1	LOC680475	XP_001057350.1	ILMN_1650685	0000070520	S	202	GCTGAACCCCTCTCGAGTGAAACAGGAAGGAGGAAATCATTCTGGGGAAG	9	+	5882040-5882089	9q11	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC680475), mRNA.					
Rattus norvegicus	RefSeq	GI_62655090-S	ILMN_272374	RGD1564820_PREDICTED	XM_001062473.1	XM_001062473.1		301436	109487113	XM_001062473.1	RGD1564820_predicted	XP_001062473.1	ILMN_1364111	0004730184	S	1313	TGGGCGTGCAGACTGAGAACAGGAAAGACCAGCCTGATGGATAAGTGGGC				9q31	PREDICTED: Rattus norvegicus similar to potassium channel tetramerisation domain containing 18 (predicted) (RGD1564820_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662221-S	ILMN_291604	RGD1564142_PREDICTED	XM_001060720.1	XM_001060720.1		498582	109503753	XM_001060720.1	RGD1564142_predicted	XP_001060720.1	ILMN_1363537	0003710215	S	8954	TCATCACGGGCAGTAAGGACGGCATGGTTCGGATTTGGAAGACAGAGGAC				16p16	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 64 (predicted) (RGD1564142_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662223-S	ILMN_291604	RGD1564142_PREDICTED	XM_001060720.1	XM_001060720.1		498582	109503753	XM_001060720.1	RGD1564142_predicted	XP_001060720.1	ILMN_1368187	0002260278	S	4170	AAGAGAAGGACCCAGGAATGCGGAAAGAGCCCACCAGGCACAGTTGGTGC				16p16	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 64 (predicted) (RGD1564142_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643642-S	ILMN_57655	LOC502532	XM_578018.1	XM_578018.1		502532	62643642	XM_578018.1	LOC502532	XP_578018.1	ILMN_1366906	0002350039	S	2075	GCCAGATGCTTGTTTTTCTGGGCAGCAGTGCGGGAGTCATGGAGATGAAC					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC502532), mRNA.					
Rattus norvegicus	RefSeq	GI_62658532-S	ILMN_267174	LOC498154	NM_001025033.1	NM_001025033.1		498154	68163504	NM_001025033.1	LOC498154	NP_001020204.1	ILMN_1359969	0006550551	S	1190	GCACTGACAGGCTAGAGAGGATCTGGTGCGAGTCTGGCTCAGGGAGTAGT	12	+	15789563-15789612	12q11	Rattus norvegicus hypothetical protein LOC498154 (LOC498154), mRNA.					
Rattus norvegicus	RefSeq	GI_62659285-S	ILMN_269145	RGD1566016_PREDICTED	XM_001058349.1	XM_001058349.1		360840	109498590	XM_001058349.1	RGD1566016_predicted	XP_001058349.1	ILMN_1365139	0006660711	S	4469	CCTCTCTTTGTTGTGGTGGCAGTTCACACAGAAGCCACCAGGAGTCTCTG				13q13	PREDICTED: Rattus norvegicus similar to KIAA0456 protein (predicted) (RGD1566016_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576128-S	ILMN_302563	OLR1385	NM_214833.1	NM_214833.1		287236	47576128	NM_214833.1	Olr1385	NP_999998.1	ILMN_1364786	0002940184	S	761	GAGCAGCCATGTTCATCTACCTGAGGCCAAGACAATACCGGACTCCAAGC	10	-	34280011-34280060	10q21	Rattus norvegicus olfactory receptor 1385 (Olr1385), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1385; ratchr10-34281870-34280923_ORF	Olr1385; ratchr10-34281870-34280923_ORF
Rattus norvegicus	RefSeq	GI_62647424-S	ILMN_66220	LOC500180	XM_575532.1	XM_575532.1		500180	62647424	XM_575532.1	LOC500180	XP_575532.1	ILMN_1351885	0006550010	S	24	CTCAGCTCCTGGGGTTGTTGCTGCTCTGGATTACAGATGCCATATGTGAC				4q31	PREDICTED: Rattus norvegicus similar to IG KAPPA CHAIN V-V REGION K2 PRECURSOR (LOC500180), mRNA.			Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20806116-S	ILMN_266391	MAGI3	NM_139084.1	NM_139084.1		245903	20806116	NM_139084.1	Magi3	NP_620784.1	ILMN_1349443	0002810164	S	5787	TTCCACTGTGACAACTGTACTGGCCCCTTATGACACATGCTTCCATCCAG	2	-	199247932-199247981	2q34	Rattus norvegicus membrane associated guanylate kinase, WW and PDZ domain containing 3 (Magi3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Slipr	Slipr
Rattus norvegicus	RefSeq	GI_62645994-S	ILMN_287113	NXT1_PREDICTED	XM_001057228.1	XM_001057228.1		296219	109470972	XM_001057228.1	Nxt1_predicted	XP_001057228.1	ILMN_1358384	0001570369	S	609	CCTGACTGCTCAGGCGTCACCCAGTAACACAGTGTGGAAGATAGCGAGTG				3q41	PREDICTED: Rattus norvegicus NTF2-related export protein 1 (predicted) (Nxt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642464-S	ILMN_287578	SORCS3_PREDICTED	XM_001060421.1	XM_001060421.1		294043	109463981	XM_001060421.1	Sorcs3_predicted	XP_001060421.1	ILMN_1359988	0002480717	S	4216	CCCGAGGAGCTGATGGACAAGGAGCTGGACACACGGGTCATAGGAAGCAT				1q54-q55	PREDICTED: Rattus norvegicus sortilin-related VPS10 domain containing receptor 3 (predicted) (Sorcs3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653463-S	ILMN_54195	LOC367050	XM_345916.3	XM_345916.3		367050	109483230	XM_345916.3	LOC367050	XP_345917.1	ILMN_1362781	0002190594	S	253	CCCAAGAAGACGACTCACCGCTGGCTCACCAAGCAGGAAGAAGAGCTGAA	8	-	31987831-31987880	8q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (LOC367050), mRNA.					
Rattus norvegicus	RefSeq	GI_62649189-S	ILMN_266138	FAM29A_PREDICTED	XR_005430.1	XR_005430.1		366403	109475076	XR_005430.1	Fam29a_predicted		ILMN_1362007	0007000056	S	2989	GAGTGTTGTGTGGTCATGGTGGCTGATGTGACAGACATAATCCTTGTACC	5	-	105666616-105666665	5q32	PREDICTED: Rattus norvegicus family with sequence similarity 29, member A (predicted) (Fam29a_predicted), misc RNA.					
Rattus norvegicus	RefSeq	GI_62643424-S	ILMN_69925	LOC310395	XM_227134.4	XM_227134.4		310395	109464856	XM_227134.4	LOC310395	XP_227134.4	ILMN_1367962	0002360100	S	2664	GGAAGTCTGTCTTGGAGGCCAGCTTGGGCTGTATATCAAGACCCTCTCTC	2	+	140140264-140140313	2q26	PREDICTED: Rattus norvegicus similar to Nocturnin (CCR4 protein homolog) (LOC310395), mRNA.					
Rattus norvegicus	RefSeq	GI_62660820-S	ILMN_57058	COBL_PREDICTED	XM_223597.4	XM_223597.4		305497	109500004	XM_223597.4	Cobl_predicted	XP_223597.4	ILMN_1359269	0006900148	S	3914	CCTTGATGGATGCTATCCGCTCGGGCACAGGAGCTGCAAGACTCAGAAAG	14	-	93156022-93156022:93173607-93173655	14q21	PREDICTED: Rattus norvegicus cordon-bleu (predicted) (Cobl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643310-S	ILMN_64611	LOC499590	XM_574915.1	XM_574915.1		499590	62643310	XM_574915.1	LOC499590	XP_574915.1	ILMN_1368098	0004540373	S	1588	CTCCTCAGGAGAGCTCAACAAACACTTTCGATCCCATACAGGTACAGATA					PREDICTED: Rattus norvegicus similar to Myoneurin (LOC499590), mRNA.					
Rattus norvegicus	RefSeq	GI_47577354-S	ILMN_285550	OLR427	NM_001000823.1	NM_001000823.1		405112	47577354	NM_001000823.1	Olr427	NP_001000823.1	ILMN_1373413	0002640500	S	789	CTCAGTGGTGAAGGACCGGGTAGCCACCATTATGTACACAGTAGTAACAC	3	+	16671375-16671424	3q11	Rattus norvegicus olfactory receptor 427 (Olr427), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr427	Olr427
Rattus norvegicus	RefSeq	GI_62656739-S	ILMN_262546	MTMR4_PREDICTED	XM_001081167.1	XM_001081167.1		287607	109491591	XM_001081167.1	Mtmr4_predicted	XP_001081167.1	ILMN_1372183	0002450148	S	3718	AGCAAGCTGGGAACCTGTTGATAAGAAGGAGACGGAGGTGACTCGCTGGG				10q26	PREDICTED: Rattus norvegicus myotubularin related protein 4 (predicted) (Mtmr4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929061-S	ILMN_297671	GGCX	NM_031756.1	NM_031756.1		81716	13929061	NM_031756.1	Ggcx	NP_113944.1	ILMN_1364162	0006770278	S	2672	GACAAGACTGGCCTTGCTGACAGATTTACCAGCCTCTGCCTCCTGGGATT	4	+	105734971-105735020	4q33	Rattus norvegicus gamma-glutamyl carboxylase (Ggcx), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase [goid 17187] [evidence IDA]; The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase [goid 17187] [evidence IEA]; The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase [goid 17187] [evidence IEA]	 [goid 8488] [evidence IDA];  [goid 8488] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body [goid 19842] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IC ];  [goid 8488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641849-S	ILMN_288064	RGD1309370_PREDICTED	XM_001073616.1	XM_001073616.1		309200	109463505	XM_001073616.1	RGD1309370_predicted	XP_001073616.1	ILMN_1369046	0000130142	S	2958	GTTCATCTTCCAGTCAGAGCGTGGCCGCTTCATCCGGGACTTTTCCAGGG				1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110055N21 (predicted) (RGD1309370_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576752-S	ILMN_283470	OLR837	NM_001000897.1	NM_001000897.1		405207	47576752	NM_001000897.1	Olr837	NP_001000897.1	ILMN_1350543	0002100458	S	899	GGAACAAGGACGTGAGGGCCGCTGTGAGGAACCTGGTGGTCCTTAAGTAA				5q22	Rattus norvegicus olfactory receptor 837 (Olr837), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47059186-S	ILMN_286970	GNL1	NM_212500.1	NM_212500.1		309593	47059186	NM_212500.1	Gnl1	NP_997665.1	ILMN_1367358	0003120632	S	1977	GGAGGACCGAGATGCAGATGAAGAGGGGGAAGGAGATGAAGACACCCCAA	20	-	2931962-2932011	20p12	Rattus norvegicus guanine nucleotide binding protein-like 1 (Gnl1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666143-S	ILMN_60288	RGD1564120_PREDICTED	XM_574785.2	XM_574785.2		499461	109509592	XM_574785.2	RGD1564120_predicted	XP_574785.1	ILMN_1355399	0003870184	S	945	GCTGTGGGTCACATCTTGTGTGTGTCAGAGGGACTGCGGAGAACCAGGAG	20	-	43298548-43298597	20q12	PREDICTED: Rattus norvegicus similar to WNT1 inducible signaling pathway protein 3 precursor (WISP-3) (predicted) (RGD1564120_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641934-S	ILMN_65833	RORB_PREDICTED	XM_219749.3	XM_219749.3		309288	62641934	XM_219749.3	Rorb_predicted	XP_219749.3	ILMN_1359047	0004150041	S	2551	ACCATTCCTACTAGCAGTGGCAGTTCAGTCAGGCTCTCTCATGTGATTTG				1q43	PREDICTED: Rattus norvegicus RAR-related orphan receptor beta (predicted) (Rorb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11024675-S	ILMN_289402	NINJ2	NM_021595.1	NM_021595.1		59115	11024675	NM_021595.1	Ninj2	NP_067606.1	ILMN_1370725	0001090594	S	663	TTCGGGGACAATGGAGATGCCCCTGCCTCTCACCCACAGCACCAGAGTTA	4	+	156578134-156578183	4q42	Rattus norvegicus ninjurin 2 (Ninj2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742594-S	ILMN_289826	THOP1	NM_172075.1	NM_172075.1		64517	25742594	NM_172075.1	Thop1	NP_742072.1	ILMN_1374375	0001690408	S	2019	AGTACCATGCTGAAGCAGTTCCTGGGCCGTGACCCCAAGCAAGACGCCTT	7	-	10117073-10117122	7q11	Rattus norvegicus thimet oligopeptidase 1 (Thop1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 6518] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence TAS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93105; EP24.15	MGC93105; EP24.15
Rattus norvegicus	RefSeq	GI_47777683-S	ILMN_288110	OLR943	NM_001001368.1	NM_001001368.1		288875	47777683	NM_001001368.1	Olr943	NP_001001368.1	ILMN_1373647	0001850687	S	440	GGCTGGCAGGATTTCTGAGCATCTTCCCTTTAATCATGCTTATCCTCAAG	7	-	4657255-4657304	7q11	Rattus norvegicus olfactory receptor 943 (Olr943), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr943	Olr943
Rattus norvegicus	RefSeq	GI_62660773	ILMN_284648	RGD1309256	XM_214087.3	XM_214087.3		289783	62660773	XM_214087.3	RGD1309256	XP_214087.3	ILMN_1650242	0006770056	S	3774	TTAAGTCAGCGCTCCTCTGTGGACTGGCCTGCGCCCTCCATGTGCTGTCT	14	+	87153840-87153889	14q21	PREDICTED: Rattus norvegicus similar to D11Bwg0280e protein (RGD1309256), mRNA.					
Rattus norvegicus	RefSeq	GI_62718419-S	ILMN_285478	LOC367539	XM_001063146.1	XM_001063146.1		367539	109521359	XM_001063146.1	LOC367539	XP_001063146.1	ILMN_1354815	0005910040	S	48	TAAGGACAACTGGAGGGGAGTGGTCTTAGCCCAGAGTCCGATCATGAAGG					PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367539), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652041-S	ILMN_49357	LOC299741	XM_238492.2	XM_238492.2		299741	62652041	XM_238492.2	LOC299741	XP_238492.2	ILMN_1364025	0004070239	S	497	GGCGTGGAAAGGACTCTGGTGGTCCTGGCATCTCCTTAGTTTGCTGAGAC					PREDICTED: Rattus norvegicus hypothetical LOC299741 (LOC299741), mRNA.					
Rattus norvegicus	RefSeq	GI_62650398-S	ILMN_57674	LOC497812	XM_579659.1	XM_579659.1		497812	62650398	XM_579659.1	LOC497812	XP_579659.1	ILMN_1365908	0001780458	S	3136	AGAACATCGAAGGGTAGGACATCCCACACTGATTTCAAAGTTTTGGCGTC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_138881 (LOC497812), mRNA.					
Rattus norvegicus	RefSeq	GI_13929003-S	ILMN_291369	WISP1	NM_031716.1	NM_031716.1		65154	13929003	NM_031716.1	Wisp1	NP_113904.1	ILMN_1360659	0003060280	S	1429	CCAGGAAAGTGCTGCTCAGGCTCAGACAATGGGTCCCTCCTTTGGGACAT	7	+	104291176-104291225	7q33	Rattus norvegicus WNT1 inducible signaling pathway protein 1 (Wisp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]	MGC93340	MGC93340
Rattus norvegicus	RefSeq	GI_13929165-S	ILMN_302279	CLIC4	NM_031818.1	NM_031818.1		83718	13929165	NM_031818.1	Clic4	NP_114006.1	ILMN_1363135	0004610020	S	701	GTCCCAGCGACAAGGAGGTGGAAATCGCGTACAGTGACGTCGCCAAGAGA	5	-	154005255-154005304	5q36	Rattus norvegicus chloride intracellular channel 4 (mitochondrial) (Clic4), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence TAS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_66730359	ILMN_285641	MAP4	NM_001024278.1	NM_001024278.1		367171	66730359	NM_001024278.1	Map4	NP_001019449.1	ILMN_1530479	0002320735	S	4690	AGATTCTTATTGCACTTGTATTTTTTGTATTAAAGTTTGCATGGTTTCTA	8	+	114437253-114437302	8q32	Rattus norvegicus microtubule-associated protein 4 (Map4), mRNA.	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62646044	ILMN_292952	LOC682264	XM_001060731.1	XM_001060731.1		682264	109471035	XM_001060731.1	LOC682264	XP_001060731.1	ILMN_1650032	0005290619	S	1168	ACTCTTCTCATCCTGAAGAAGCATCGGGCAATCGAGCTGAGCCAGAGCGC					PREDICTED: Rattus norvegicus similar to Double-strand-break repair protein rad21 homolog (Pokeweed agglutinin-binding protein 29) (PW29) (SCC1 homolog) (LOC682264), mRNA.					
Rattus norvegicus	RefSeq	GI_62653212-S	ILMN_64458	MMP27_PREDICTED	XM_235795.2	XM_235795.2		300340	62653212	XM_235795.2	Mmp27_predicted	XP_235795.2	ILMN_1374514	0006100528	S	1639	GCCCACATTCACAGTGCCTCACAAGACCCTCCTACGCCAGTGTTTTCAGC				8q11	PREDICTED: Rattus norvegicus matrix metalloproteinase 27 (predicted) (Mmp27_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717936-S	ILMN_56393	LOC367422	XM_576678.1	XM_576678.1		367422	62717936	XM_576678.1	LOC367422	XP_576678.1	ILMN_1352991	0006760538	S	787	CGTCTGTTCTGATGTCTTCCACGTTTGAGAGCTCGGCAGATGGTCTAGGC					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC367422), mRNA.					
Rattus norvegicus	RefSeq	GI_62657052-S	ILMN_62784	HSPB9_PREDICTED	XM_343967.3	XM_343967.3		363681	109489025	XM_343967.3	Hspb9_predicted	XP_343968.1	ILMN_1359255	0000630403	S	459	CAAGGGACAAAATAAGTGCCTACCTCTCCCTGAAGCCCAAACAGGCCCCC	10	+	89651574-89651623	10q32.1	PREDICTED: Rattus norvegicus heat shock protein, alpha-crystallin-related, B9 (predicted) (Hspb9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591931-S	ILMN_302018	CSPG4	NM_031022.1	NM_031022.1		81651	13591931	NM_031022.1	Cspg4	NP_112284.1	ILMN_1352096	0000070609	S	7836	GTGTTTGACTGTGCACTGGGCTCTGATTCCGTGGCAGCTTTGCTCCCTGG	8	+	60645636-60645685	8q24	Rattus norvegicus chondroitin sulfate proteoglycan 4 (Cspg4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence TAS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence ISS]; The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development [goid 16322] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEP]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence TAS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA];  [goid 5082] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ng2	Ng2
Rattus norvegicus	RefSeq	GI_11968081-S	ILMN_273263	MTHFD1	NM_022508.1	NM_022508.1		64300	11968081	NM_022508.1	Mthfd1	NP_071953.1	ILMN_1365523	0006550068	S	3149	GGCCAGTGTCTGTTCAGGCCCACTGAGGAAGTGTGCAGAGAAGTCTTGAA	6	+	98916752-98916801	6q24	Rattus norvegicus methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase (Mthfd1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6548] [evidence ISS]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates) [goid 9117] [evidence IEP]; The chemical reactions and pathways resulting in the formation of folic acid and its derivatives [goid 9396] [evidence IEA]; The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety [goid 46653] [evidence TAS]	Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate [goid 4329] [evidence IEA]; Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate [goid 4329] [evidence TAS]; Catalysis of the reaction: 5,10-methenyltetrahydrofolate + H2O = 10-formyltetrahydrofolate [goid 4477] [evidence TAS]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + NAD(P)+ = 5,10-methenyltetrahydrofolate + NAD(P)H + H+ [goid 4486] [evidence TAS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: 10-formyltetrahydrofolate + NADP+ + H2O = tetrahydrofolate + CO2 + NADPH + H+ [goid 16155] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659654-S	ILMN_294107	RGD1561738_PREDICTED	XR_008822.1	XR_008822.1		501858	109498869	XR_008822.1	RGD1561738_predicted		ILMN_1373578	0004230022	S	49	CCAAGCTATGAGACAAGCAAAGCTATGAGACAAGCAAAGAGGAGTACGGG				13q21	PREDICTED: Rattus norvegicus similar to interferon induced transmembrane protein 2 (1-8D) (predicted) (RGD1561738_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527253-S	ILMN_287761	ITM2C	NM_001009674.1	NM_001009674.1		301575	57527253	NM_001009674.1	Itm2c	NP_001009674.1	ILMN_1349198	0002230670	S	1817	TTTGGTGCCTCGCATCAGACTTCGGTGCTCCGTGGCGGTGAAGCCCTTAA	9	+	84625260-84625309	9q35	Rattus norvegicus integral membrane protein 2C (Itm2c), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94903	MGC94903
Rattus norvegicus	RefSeq	GI_62649172-S	ILMN_61075	LOC313340	XM_233139.3	XM_233139.3		313340	62649172	XM_233139.3	LOC313340	XP_233139.3	ILMN_1349565	0002570195	S	5172	CAGGCAGCCAGCGCGTTAGTGGAGACGATCCGGCAGAGTATTCAGCAGAA				5q32	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC313340), mRNA.					
Rattus norvegicus	RefSeq	GI_58372165-S	ILMN_301133	HAPLN2	NM_022285.1	NM_022285.1		64057	58372165	NM_022285.1	Hapln2	NP_071621.1	ILMN_1357365	0006200735	S	1306	CAGCGAGATGCTCTGGGCTCCTGGGTAAAGGGGCTTCCTGGGCATTAACT	2	-	180104717-180104766	2q34	Rattus norvegicus hyaluronan and proteoglycan link protein 2 (Hapln2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IEA]	Bral1	Bral1
Rattus norvegicus	RefSeq	GI_62638852	ILMN_70094	RGD1563529_PREDICTED	XM_574350.2	XM_574350.2		499069	109457939	XM_574350.2	RGD1563529_predicted	XP_574350.1	ILMN_1650176	0003440239	S	438	CCCTATGAAGGAGATTTTGCAGTTGAGGCTGAAACAGATTTCTTGGACCA	1	-	66824968-66825017	1q12	PREDICTED: Rattus norvegicus similar to NALP-alpha (predicted) (RGD1563529_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090302-S	ILMN_296733	NUFIP1	NM_001007758.1	NM_001007758.1		364430	56090302	NM_001007758.1	Nufip1	NP_001007759.1	ILMN_1358584	0004670520	S	1231	CGAGCCAAGTGGAAGGCCCAGAGGAGTGGGCTCCGAAAGATAACCCTTAA	15	+	57056786-57056835	15q11	Rattus norvegicus nuclear fragile X mental retardation protein interacting protein 1 (Nufip1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts [goid 5726] [evidence IEA]; Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts [goid 5726] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation [goid 8023] [evidence IEA]; Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation [goid 8023] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22626] [evidence IEA]; A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22626] [evidence ISS]; A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix [goid 48786] [evidence IEA]; A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix [goid 48786] [evidence ISS]	Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95323	MGC95323
Rattus norvegicus	RefSeq	GI_62657384-S	ILMN_276719	RGD1307394_PREDICTED	XM_001081752.1	XM_001081752.1		360667	109492278	XM_001081752.1	RGD1307394_predicted	XP_001081752.1	ILMN_1358748	0003990010	S	1379	CAGCATATTGGGTTTTCTCTACTCGGAAGACAGCGCACCGGCCTTCGCCG				10q32.3	PREDICTED: Rattus norvegicus similar to hypothetical protein ET (predicted) (RGD1307394_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665683-S	ILMN_281130	RGD1566118_PREDICTED	XM_001076548.1	XM_001076548.1		361797	109509741	XM_001076548.1	RGD1566118_predicted	XP_001076548.1	ILMN_1372185	0005050273	S	700	GCATGGCAGGTGGCAGCCCAGACTGAACCAGAGCCTCACTTGAACATGAG				20p12	PREDICTED: Rattus norvegicus RGD1566118 (predicted) (RGD1566118_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718033-S	ILMN_270375	LOC301120	XM_001060058.1	XM_001060058.1		301120	109486606	XM_001060058.1	LOC301120	XP_001060058.1	ILMN_1373757	0002120711	S	1901	GAGACAGACCAGATGAGTGGAGAGCCCTTGGACAAGCTGAACCTGGAGGC					PREDICTED: Rattus norvegicus similar to lipidosin (LOC301120), mRNA.					
Rattus norvegicus	RefSeq	GI_9506450-S	ILMN_300701	CAR5A	NM_019293.1	NM_019293.1		54233	9506450	NM_019293.1	Car5a	NP_062166.1	ILMN_1362319	0003870438	S	934	CAGGATGAGGTCTGTAAGGATAGGCAGAGCGGATGGAAAAGGGGGTGCGC	19	-	52158823-52158872	19q12	Rattus norvegicus carbonic anhydrase 5a, mitochondrial (Car5a), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IDA]; Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence ISS]; Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC108708; Ca5	MGC108708; Ca5
Rattus norvegicus	RefSeq	GI_62662192-S	ILMN_291432	BAP1_PREDICTED	XM_001058224.1	XM_001058224.1		306257	109503751	XM_001058224.1	Bap1_predicted	XP_001058224.1	ILMN_1361735	0003390026	S	1893	TCTACCAGATCAAGCCAAGGCAGCCAGGGGTCCAGCAGCCTAGAGGAGAA				16p16	PREDICTED: Rattus norvegicus Brca1 associated protein 1 (predicted) (Bap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649847-S	ILMN_295240	LOC500567	NM_001024348.1	NM_001024348.1		500567	66730498	NM_001024348.1	LOC500567	NP_001019519.1	ILMN_1350320	0004070176	S	1275	GCCTCTGCTATCCAGTCTCCAGGCCAACTACCTGCTAGACCACAGCCTGA	5	+	154400492-154400541	5q36	Rattus norvegicus similar to RIKEN cDNA 1700029M20 (LOC500567), mRNA.					
Rattus norvegicus	RefSeq	GI_62660144	ILMN_49625	DSPP	XM_577305.1	XM_577305.1		25254	62660144	XM_577305.1	Dspp	XP_577305.1	ILMN_1651121	0002970066	S	3321	TGACGACAGCAAGTCTGGTAATGGCAACAGTGACAGCGACAGTGACAGCG				14p22	PREDICTED: Rattus norvegicus dentin sialophosphoprotein (Dspp), mRNA.	A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEP]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEP]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742653-S	ILMN_287951	GNA15	NM_053542.1	NM_053542.1		89788	25742653	NM_053542.1	Gna15	NP_445994.1	ILMN_1358428	0001450053	S	1266	ATCAACCTGTTGTGACACGGGGAACCCGAAGCGGTGGTGGCGAGGACACT	7	+	9689025-9689034:9689035-9689074	7q11	Rattus norvegicus guanine nucleotide binding protein, alpha 15 (Gna15), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]	The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEP]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662808-S	ILMN_282074	RGD1562020_PREDICTED	XM_001070383.1	XM_001070383.1		290820	109504358	XM_001070383.1	RGD1562020_predicted	XP_001070383.1	ILMN_1352035	0001940286	S	351	CGCCCCATGACAAGGAAAAGCAGATGGTGGTCCCCGCTACCCTCAAGGTT				16q12.3	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L13a (Transplantation antigen P198) (predicted) (RGD1562020_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718492-S	ILMN_64176	LOC301816	XM_229292.4	XM_229292.4		301816	109513698	XM_229292.4	LOC301816	XP_229292.4	ILMN_1356144	0001580079	S	359	AGTGAAAGACACCCATCTCACAAGGGTCATGGTTGGCCGAGCTGTGGAGC	Un|NW_047906.1	-	580587-580636		PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC301816), mRNA.		The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62656793-S	ILMN_68734	LOC303291	XM_220714.3	XM_220714.3		303291	62656793	XM_220714.3	LOC303291	XP_220714.3	ILMN_1375071	0000450609	S	1524	CATCTGCTGGGGGACGCTGGAAGCCCCTACCTCATTGGCTTTATCTCGGA					PREDICTED: Rattus norvegicus similar to spinster-like protein (predicted) (LOC303291), mRNA.					
Rattus norvegicus	RefSeq	GI_62653931-S	ILMN_54637	CD109_PREDICTED	XM_343437.3	XM_343437.3		363104	109483716	XM_343437.3	Cd109_predicted	XP_343438.3	ILMN_1364288	0004560156	S	3417	CAGCAAGCAGAAAAGGAAGGTAATGCCTGGGACCCCGCTGAGGCTAATCG	8	+	83672645-83672694	8q31	PREDICTED: Rattus norvegicus CD109 antigen (predicted) (Cd109_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718933-S	ILMN_48912	ODF1	NM_024126.4	NM_024126.4		24610	77416366	NM_024126.4	Odf1	NP_077040.1	ILMN_1354623	0002760195	S	1105	TGCTGGATGAGAAAGACGTGACCTACTCCTACGGGCTCGGCAGTTGTGTC	7	+	73744174-73744223	7q22	Rattus norvegicus outer dense fiber of sperm tails 1 (Odf1), mRNA.	Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence IEA]; Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence ISS]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_33285016-S	ILMN_271351	DMN	XM_001055724.1	XM_001055724.1		308709	109458879	XM_001055724.1	Dmn	XP_001055724.1	ILMN_1373384	0003450082	S	6278	TCAGTCACTCTGGAGTCAAATGGACACTGTGGTAGGGCAGGGAGGGTGGG	1	-	122474403-122474452	1q22	PREDICTED: Rattus norvegicus desmuslin, transcript variant 2 (Dmn), mRNA.					
Rattus norvegicus	RefSeq	GI_62663384-S	ILMN_51477	LOC498724	XM_579867.1	XM_579867.1		498724	62663384	XM_579867.1	LOC498724	XP_579867.1	ILMN_1354215	0003140239	S	448	ACCTGTTTCGCTCTGATTGGCCTGGAACTTAGCCTTCCTGTTGGAGCCTC					PREDICTED: Rattus norvegicus LOC498724 (LOC498724), mRNA.					
Rattus norvegicus	RefSeq	GI_62648910-S	ILMN_271559	LOC683686	XM_001064799.1	XM_001064799.1		683686	109476343	XM_001064799.1	LOC683686	XP_001064799.1	ILMN_1368615	0004920239	S	573	AGACAATGACATCCTTCTCAACCTGGTGGGATGCAAGGACGCTGGTGCTG					PREDICTED: Rattus norvegicus similar to zinc finger, CCHC domain containing 7, transcript variant 1 (LOC683686), mRNA.					
Rattus norvegicus	RefSeq	GI_62659814-S	ILMN_47761	LOC364044	XM_577286.1	XM_577286.1		364044	62659814	XM_577286.1	LOC364044	XP_577286.1	ILMN_1369688	0000580750	S	859	GAAATGTTTCCTCCCGGGCTGACGCCGGATTCTCACGGGGCCCACTTTTA					PREDICTED: Rattus norvegicus similar to heat shock 70kDa protein 6 (HSP70B) (LOC364044), mRNA.					
Rattus norvegicus	RefSeq	GI_62639726-S	ILMN_275001	RGD1562492_PREDICTED	XM_001080716.1	XM_001080716.1		499151	109461917	XM_001080716.1	RGD1562492_predicted	XP_001080716.1	ILMN_1354790	0003170440	S	1463	CATGGGTCTGGGCACCATGACAACACTCGTGGAGGGCATCGCTCTTTCTC				1q22	PREDICTED: Rattus norvegicus similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16) (predicted) (RGD1562492_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717982-S	ILMN_59104	LOC501268	XM_576684.1	XM_576684.1		501268	62717982	XM_576684.1	LOC501268	XP_576684.1	ILMN_1349819	0006770129	S	819	CTGAGCTGTGCTGAGTCTGGCTGAGTCTGTGCACAGGCTTCCCCGCTACC					PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC501268), mRNA.					
Rattus norvegicus	RefSeq	GI_62647693-S	ILMN_268609	RGD1307930_PREDICTED	XM_001073206.1	XM_001073206.1		312490	109473799	XM_001073206.1	RGD1307930_predicted	XP_001073206.1	ILMN_1368432	0004810037	S	601	TCTTGTCCCCGTACCTGGGGCCAGCAATGCACAAAAAGGCGGAGCTGAAG				4q34	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC27648 (predicted) (RGD1307930_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648510-S	ILMN_281206	RGD1566224_PREDICTED	XM_001062611.1	XM_001062611.1		500384	109475989	XM_001062611.1	RGD1566224_predicted	XP_001062611.1	ILMN_1357407	0003990736	S	913	CGCAGTAGTTGGTACTGTGTTTGCCATATGTGAGGCCCTAGGATCGGCCT				5q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210416J16 (predicted) (RGD1566224_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164066	ILMN_300909	V1RE24	NM_001009516.1	NM_001009516.1		494236	57164066	NM_001009516.1	V1re24	NP_001009516.1	ILMN_1650640	0000130520	S	843	GGGACCTTTTGTGATTAATCGTGACCCAACTTTGCCAGCATTATGCTCGC	1	+	57289509-57289558	1q12	Rattus norvegicus vomeronasal 1 receptor, E24 (V1re24), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.107334-S	ILMN_161406	RN.107334-S	Rn.107334-S		Rn.107334-S		28835687	CB312908			ILMN_1530211	0002070398	S	328	CTTCAAGTTCTACCATGCTGTGGACTGGTTGCCCGGTACGCGCCGATTCG					AGENCOURT_11468127 NICHD_Rr_Pit1 Rattus norvegicus cDNA clone IMAGE:6891565 5', mRNA					
Rattus norvegicus	RefSeq	GI_62658036-S	ILMN_282537	RGD1305170_PREDICTED	XM_001053358.1	XM_001053358.1		303861	109494580	XM_001053358.1	RGD1305170_predicted	XP_001053358.1	ILMN_1360797	0000510022	S	1586	CCGGGAGGGCTCAGATGTCACAGCAATGGCCTACAATTCCAGTCAGGAGT				11q22	PREDICTED: Rattus norvegicus similar to Carboxypeptidase N 83 kDa chain (Carboxypeptidase N regulatory subunit) (predicted) (RGD1305170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658845-S	ILMN_51178	SBNO1	XM_222152.4	XM_222152.4		304470	109495835	XM_222152.4	Sbno1	XP_222152.4	ILMN_1356167	0003780133	S	3783	GCGGCTCAGGACCGAAGACGGGCAGCGGATTGTAGGTTTAATCATTCCGG	12	+	33342902-33342936:33343901-33343915	12q15	PREDICTED: Rattus norvegicus sno, strawberry notch homolog 1 (Drosophila) (Sbno1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62657181-S	ILMN_47939	WNT3_MAPPED	XM_221016.3	XM_221016.3		24882	109489156	XM_221016.3	Wnt3_mapped	XP_221016.3	ILMN_1349133	0005570008	S	1238	GTGGCAGGGGCCACAACACCAGGACGGAGAAGCGGAAGGAGAAATGTCAT	10	+	92964246-92964295	10q32.1	PREDICTED: Rattus norvegicus wingless-type MMTV integration site family, member 3 (mapped) (Wnt3_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_56605685-S	ILMN_275197	PTOV1	NM_001008304.1	NM_001008304.1		292888	56605685	NM_001008304.1	Ptov1	NP_001008305.1	ILMN_1366111	0000780273	S	1402	CAGTGGAGACTGGTGAGCGGCACTTGTGTTTGTGGGAAGCAGCAGGGTGA	1	-	95336169-95336218	1q22	Rattus norvegicus prostate tumor over expressed gene 1 (Ptov1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC94482	MGC94482
Rattus norvegicus	RefSeq	GI_51491889-S	ILMN_266753	TNP1	NM_017056.2	NM_017056.2		24839	51491889	NM_017056.2	Tnp1	NP_058752.1	ILMN_1356154	0001990053	S	115	ACCGGAAGAGCAGCCTGAAGAGTAGGAAACGGGGCGATGATGCAAGTCGC	9	-	72397997-72398005:72398204-72398244	9q33	Rattus norvegicus transition protein 1 (Tnp1), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence ISS]; A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	The repair of single strand breaks in DNA. Repair of such breaks is mediated by the same enzyme systems as are used in base excision repair [goid 12] [evidence ISS]; The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6337] [evidence ISS]; Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation [goid 6338] [evidence ISS]; Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin [goid 6342] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The change in shape of the spermatid nucleus from a spherical structure to an elongated organelle, during the latter part of spermatid differentiation [goid 7290] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51036648-S	ILMN_300719	GJA4	NM_021654.2	NM_021654.2		25655	51036648	NM_021654.2	Gja4	NP_067686.1	ILMN_1364840	0006760537	S	1494	GGATCTGGCCCTTTCCAGGGGAGCTGGTTGGTGTCTTGTTTCCCTCACTC	5	-	146755107-146755156	5q36	Rattus norvegicus gap junction protein, alpha 4 (Gja4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence TAS]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence TAS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEP]		CXN37	CXN37
Rattus norvegicus	RefSeq	GI_62648119-S	ILMN_53210	AICDA	XM_575660.2	XM_575660.2		399679	109472595	XM_575660.2	aicda	XP_575660.2	ILMN_1352905	0001170619	S	611	CAGGCTAACCAGACAGCTTCGGCGCATCCTTTTGCCCTTGTATGAAGTCG	4	+	159014977-159015010:159015440-159015455	4q42	PREDICTED: Rattus norvegicus activation-induced cytidine deaminase (aicda), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence IEA]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655027-S	ILMN_51830	OSGEPL1_PREDICTED	XM_234772.3	XM_234772.3		314548	62655027	XM_234772.3	Osgepl1_predicted	XP_234772.3	ILMN_1371892	0000460538	S	1416	CTAGGGGAGCCAACATCCAGACATCCATGTGCTCCTGCACACAGACGGTG				9q22	PREDICTED: Rattus norvegicus O-sialoglycoprotein endopeptidase-like 1 (predicted) (Osgepl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644149-S	ILMN_61686	LOC362010	XM_342309.2	XM_342309.2		362010	62644149	XM_342309.2	LOC362010	XP_342310.2	ILMN_1362889	0005570128	S	301	GAAAATGTAACTCCAGTGCCCAGACCCGGTACCCTCACTCAGAGCCTCCC					PREDICTED: Rattus norvegicus similar to novel protein (LOC362010), mRNA.					
Rattus norvegicus	RefSeq	GI_62667389-S	ILMN_59492	LOC503476	XM_579029.1	XM_579029.1		503476	62667389	XM_579029.1	LOC503476	XP_579029.1	ILMN_1349799	0004070537	S	181	GAAGAAGAAGGGATGCAAATGCACCTTGGAAGGCCCATCCTCATGTGGAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC503476), mRNA.					
Rattus norvegicus	RefSeq	GI_62647610-S	ILMN_51724	RGD1561816_PREDICTED	XM_578346.2	XM_578346.2		502846	109472173	XM_578346.2	RGD1561816_predicted	XP_578346.2	ILMN_1358100	0001980180	S	1260	CAGTGGGGACCAGAGTAGCCCCTTCGGCAGCCCTTTCTACAACTTCAGCA	4	+	104149618-104149667	4q32	PREDICTED: Rattus norvegicus similar to FoxI1c protein (predicted) (RGD1561816_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639659-S	ILMN_269814	MYBPC2_PREDICTED	XM_001077870.1	XM_001077870.1		292879	109461852	XM_001077870.1	Mybpc2_predicted	XP_001077870.1	ILMN_1356456	0005130142	S	3430	TGAACTTGGGGAGGCCCTGGCTGAATGCAAACTGGATGTCCGAGTGCCAC				1q22	PREDICTED: Rattus norvegicus myosin binding protein C, fast-type (predicted) (Mybpc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675846-S	ILMN_265305	APLNR	NM_031349.2	NM_031349.2		83518	48675846	NM_031349.2	Aplnr	NP_112639.1	ILMN_1356199	0004920598	S	3434	CTTTCACACAGCGTCTTCATCTGCCAGGCCATCCTCAAAGCAGCCAGTAC	3	+	68369070-68369119	3q24	Rattus norvegicus apelin receptor (Aplnr), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IMP]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that modulates the levels of body fluids [goid 50878] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence TAS]	Apj	Apj
Rattus norvegicus	RefSeq	GI_62664417-S	ILMN_264971	GK-RS1_PREDICTED	XM_001057654.1	XM_001057654.1		291468	109507337	XM_001057654.1	Gk-rs1_predicted	XP_001057654.1	ILMN_1356249	0001090736	S	1692	AAGGTGTCCCATAAATCATGCCTCCTTGTGGATTCTCCAGTCGAGAGCTC				18q11	PREDICTED: Rattus norvegicus glucokinase activity, related sequence 1 (predicted) (Gk-rs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655264-A	ILMN_53227	HDAC1	XM_576595.2	XM_576595.2		84576	109486273	XM_576595.2	Hdac1	XP_576595.1	ILMN_1376865	0001450279	S	1279	CTGTGAGGAGGAATTCCCTGATTCTGATGAGGAGGGAGAAGGAGGTCGAG	9	-	78410820-78410869	9q33	PREDICTED: Rattus norvegicus histone deacetylase 1 (Hdac1), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]; The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655264-I	ILMN_53227	HDAC1	XM_576595.2	XM_576595.2		84576	109486273	XM_576595.2	Hdac1	XP_576595.1	ILMN_1376057	0000840021	S	1760	AGGACGCCTTTGCTAAGCTCTTCAGCAGGGGTGACTGTGTCTTCTGGGGC	9	-	78410339-78410388	9q33	PREDICTED: Rattus norvegicus histone deacetylase 1 (Hdac1), mRNA.	A protein complex that possesses histone deacetylase activity [goid 118] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A compact and highly condensed form of chromatin [goid 792] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence ISS]; An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins [goid 16581] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence ISS]; The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues [goid 7492] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]; The modification of histones by removal of acetyl groups [goid 16575] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Catalysis of the hydrolysis of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes [goid 4407] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641980-S	ILMN_68105	LOC365405	XM_344990.2	XM_344990.2		365405	62641980	XM_344990.2	LOC365405	XP_344991.2	ILMN_1367878	0006450075	S	96	CACCAAGTTTATGCAGGACATGATCCAGGAGTCTGCGGGGACTTCAACGC					PREDICTED: Rattus norvegicus similar to Nocturnin (CCR4 protein homolog) (LOC365405), mRNA.					
Rattus norvegicus	RefSeq	GI_62664756-S	ILMN_60025	LOC498901	XM_574188.1	XM_574188.1		498901	62664756	XM_574188.1	LOC498901	XP_574188.1	ILMN_1361494	0006020288	S	885	GGGTAAAGCCCAACATAAGGAGGCAAGCTATACCCTAGAAGCAAGAAACT					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498901), mRNA.					
Rattus norvegicus	RefSeq	GI_58865819	ILMN_267667	LOXL1	NM_001012125.1	NM_001012125.1		315714	58865819	NM_001012125.1	Loxl1	NP_001012125.1	ILMN_1530405	0002850403	S	2336	TAAGTCTCCTCTACAACACCATTTTGTCTGTTGTTGGTTTTAATTTTGAT	8	-	62083117-62083166	8q24	Rattus norvegicus lysyl oxidase-like 1 (Loxl1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]		Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + H2O2 [goid 4720] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule [goid 16641] [evidence ISS]	MGC105563	MGC105563
Rattus norvegicus	RefSeq	GI_62653756-A	ILMN_267667	LOXL1	NM_001012125.1	NM_001012125.1		315714	58865819	NM_001012125.1	Loxl1	NP_001012125.1	ILMN_1376846	0004480546	S	2270	CGGCCTCAGGGAGTGAACATGGACCAAACCCACAGGGATTCTGGATGCCA	8	-	62083183-62083232	8q24	Rattus norvegicus lysyl oxidase-like 1 (Loxl1), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]		Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + H2O2 [goid 4720] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule [goid 16641] [evidence ISS]	MGC105563	MGC105563
Rattus norvegicus	RefSeq	GI_6981373-S	ILMN_276027	PMCH	NM_012625.1	NM_012625.1		24659	6981373	NM_012625.1	Pmch	NP_036757.1	ILMN_1356416	0002510736	S	500	TGACATGCTCAGGTGTATGCTGGGACGAGTCTACCGACCCTGTTGGCAAG	7	+	24778952-24778957:24779210-24779253	7q13	Rattus norvegicus pro-melanin-concentrating hormone (Pmch), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]	Any process that modulates the frequency or rate of heart contraction [goid 2027] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IEP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence TAS]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 32227] [evidence IDA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IDA]; Any process that activates or increases the duration or quality of rapid eye movement (REM) sleep [goid 46005] [evidence IDA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IMP]	 [goid 30354] [evidence IEA]; Interacting selectively with a type 1 melanin-concentrating hormone receptor [goid 31777] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_51948399-S	ILMN_262363	NQO2	NM_001004214.1	NM_001004214.1		291084	51948399	NM_001004214.1	Nqo2	NP_001004214.1	ILMN_1365666	0002680471	S	732	AGCGGCTGAAGAGCATCTGGAAGGAAGAACCCATCCACTGCACACCCTCT	17	-	37256053-37256102	17p12	Rattus norvegicus NAD(P)H dehydrogenase, quinone 2 (Nqo2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 1-(beta-D-ribofuranosyl)-1,4-dihydronicotinamide + a quinone = 1-(beta-D-ribofuranosyl)nicotinamide + a hydroquinone [goid 1512] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]	MGC94180	MGC94180
Rattus norvegicus	RefSeq	GI_62666680-S	ILMN_66736	LOC501537	XM_576940.1	XM_576940.1		501537	62666680	XM_576940.1	LOC501537	XP_576940.1	ILMN_1362921	0005340390	S	1852	AGGCTGTGGTATCAGACTGGCTGCAAGAGATGAGGTAGAATTTAGGGGAA					PREDICTED: Rattus norvegicus similar to doublecortin isoform a (LOC501537), mRNA.					
Rattus norvegicus	RefSeq	GI_34875741-S	ILMN_67766	LOC301376	XM_237098.2	XM_237098.2		301376	34875741	XM_237098.2	LOC301376	XP_237098.2	ILMN_1371569	0002450026	S	544	TGTTCGACATGACCACTTATCCAGGCATGGACGGGCGAACACTGGCGCTC				9q22	PREDICTED: Rattus norvegicus similar to Golgi phosphoprotein 3-like (LOC301376), mRNA.					
Rattus norvegicus	RefSeq	GI_34328535-S	ILMN_267234	SSBP1	NM_183328.1	NM_183328.1		54304	34328535	NM_183328.1	Ssbp1	NP_899157.1	ILMN_1352625	0002470333	S	340	CGGCCAGGCCTCAGAGATGTGGCTTATCAGTATGTGAAAAAGGGGGCTCG	4	+	68032270-68032313:68033334-68033339	4q22	Rattus norvegicus single-stranded DNA binding protein 1 (Ssbp1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence NAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence NAS]; Interacting selectively with single-stranded DNA [goid 3697] [evidence IEA]	Ssbp	Ssbp
Rattus norvegicus	RefSeq	GI_32401466-S	ILMN_295637	TNNI3K	NM_181769.1	NM_181769.1		295531	32401466	NM_181769.1	Tnni3k	NP_861434.1	ILMN_1369592	0007100148	S	2802	GCCTGGGGCTGGGGTTCAAATCTGTGTAGATAGCTGGGTTGACCCTTATG				2q45	Rattus norvegicus TNNI3 interacting kinase (Tnni3k), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658181-S	ILMN_54650	LOC498113	XM_573321.1	XM_573321.1		498113	62658181	XM_573321.1	LOC498113	XP_573321.1	ILMN_1360713	0001240301	S	726	CAGTGATGTGAACCATAGAGGAAGTTCTGTGACCAGCTACGAGCTGATCC				11q23	PREDICTED: Rattus norvegicus similar to This CDS feature is included to show the translation of the corresponding V_region. Presently translation qualifiers on V_region features are illegal (LOC498113), mRNA.					
Rattus norvegicus	RefSeq	GI_62659194-S	ILMN_51464	HSPCAL3_PREDICTED	XM_216334.3	XM_216334.3		297852	62659194	XM_216334.3	Hspcal3_predicted	XP_216334.3	ILMN_1364500	0006550632	S	1976	GGTCATCTTGCTGTACAAAACAGCACTCCTGTCTTCCAGCTTCAGTCTGG					PREDICTED: Rattus norvegicus heat shock 90kDa protein 1, alpha-like 3 (predicted) (Hspcal3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13676852-S	ILMN_278004	CDS1	NM_031242.1	NM_031242.1		81925	13676852	NM_031242.1	Cds1	NP_112521.1	ILMN_1352002	0006760575	S	3470	CAGGCGGGGACCCTTCAGTGGAAAACTGCCGCTTGAACTGCTGCTGACTT	14	-	9073197-9073246	14p22	Rattus norvegicus CDP-diacylglycerol synthase 1 (Cds1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol [goid 4605] [evidence IDA]; Catalysis of the reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol [goid 4605] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662678-S	ILMN_52051	LOC361152	XM_341437.2	XM_341437.2		361152	62662678	XM_341437.2	LOC361152	XP_341438.2	ILMN_1359402	0003440113	S	241	TGCTGGGCTGTCCAGGTCTCAGGGGAAAGGCCATTTTTCCAGTTCTGGGT					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC361152), mRNA.					
Rattus norvegicus	RefSeq	GI_62647042-S	ILMN_271394	LUC7L2_PREDICTED	XM_001069518.1	XM_001069518.1		312251	109473363	XM_001069518.1	Luc7l2_predicted	XP_001069518.1	ILMN_1361282	0001850041	S	1516	CGTGACAGAGACAGGAGTTCAAGAGACAGATCACCCCGTGACCGAGATCG				4q22	PREDICTED: Rattus norvegicus LUC7-like 2 (S. cerevisiae) (predicted) (Luc7l2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654281-S	ILMN_49283	RGD1560778_PREDICTED	XM_236630.4	XM_236630.4		316001	109483950	XM_236630.4	RGD1560778_predicted	XP_236630.1	ILMN_1367472	0001980133	S	755	GGAGTTGCCCGAAGCGACCAGTGAAGGAAGTGATGGAGATGTTCCCCGAG	8	-	113254060-113254109	8q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530418L21 (predicted) (RGD1560778_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13242321-S	ILMN_272499	ATF4	NM_024403.1	NM_024403.1		79255	13242321	NM_024403.1	Atf4	NP_077379.1	ILMN_1375100	0006020441	S	793	CGTGGTTCTCGACCCAAACCTTATGACCCACCTGGAGTTAGTGTGACAGC	7	+	118538620-118538669	7q34	Rattus norvegicus activating transcription factor 4 (tax-responsive enhancer element B67) (Atf4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence ISS]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; Interacting selectively with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor [goid 50811] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653870-S	ILMN_282348	BNIP2_PREDICTED	XM_001055775.1	XM_001055775.1		300811	109484967	XM_001055775.1	Bnip2_predicted	XP_001055775.1	ILMN_1349862	0003710053	S	2397	GTGGTGTCGTGTGTGTGAAGCTGTGAGGTGTGCAGAGGCTTCGATGAGCA				8q24	PREDICTED: Rattus norvegicus BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 (predicted) (Bnip2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641464-S	ILMN_64513	RGD1561639_PREDICTED	XM_219345.4	XM_219345.4		308991	109459419	XM_219345.4	RGD1561639_predicted	XP_219345.4	ILMN_1371028	0003440167	S	1910	CTGGACCCAGCCAGCTTCATGTGTGTGGCTTCTGTGGGAAAGAGTTCCCC	1	+	186500352-186500401	1q36	PREDICTED: Rattus norvegicus similar to Zinc finger protein 553 (predicted) (RGD1561639_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653264-S	ILMN_263650	MTNR1B	XM_001074702.1	XM_001074702.1		192646	109484262	XM_001074702.1	Mtnr1b	XP_001074702.1	ILMN_1373099	0001500722	S	694	AGGAAGGCAAAGGCTGAGAGAAAGCTACGCCTGAGACCCAGTGACCTGCG				8q12	PREDICTED: Rattus norvegicus melatonin receptor 1B (Mtnr1b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melatonin, N-acetyl-5-methoxytryptamine, to initiate a change in cell activity. Melatonin is a neuroendocrine substance that stimulates the aggregation of melanosomes in melanophores, thus lightening the skin [goid 8502] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654896-S	ILMN_57774	RAB23_PREDICTED	XM_346033.2	XM_346033.2		367242	62654896	XM_346033.2	Rab23_predicted	XP_346034.2	ILMN_1350153	0002510537	S	605	GTCCCGCTTTACTAATCCATTTATGCCCGTGACAGGACTTGGAGTGGACC				9q21	PREDICTED: Rattus norvegicus RAB23, member RAS oncogene family (predicted) (Rab23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646515-S	ILMN_66684	COL9A3_PREDICTED	XM_342599.3	XM_342599.3		362285	109469358	XM_342599.3	Col9a3_predicted	XP_342600.3	ILMN_1372636	0002260215	S	3124	GAGGGATGTGGCTCCAGTTGGTGGGACTCTAGTAAGGACTTTGAGAGCAC	3	+	169712810-169712859	3q43	PREDICTED: Rattus norvegicus procollagen, type IX, alpha 3 (predicted) (Col9a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646513-S	ILMN_66684	COL9A3_PREDICTED	XM_342599.3	XM_342599.3		362285	109469358	XM_342599.3	Col9a3_predicted	XP_342600.3	ILMN_1358312	0003610129	S	2430	CTGGCTACAGTGTGATGAAGGCAAGGAACTTAATGTCTGCTTCACCTGCT	3	+	169712116-169712165	3q43	PREDICTED: Rattus norvegicus procollagen, type IX, alpha 3 (predicted) (Col9a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302017-S	ILMN_275530	PRL2B1	NM_138861.1	NM_138861.1		192224	20302017	NM_138861.1	Prl2b1	NP_620216.1	ILMN_1358802	0004810088	S	557	GAGAGATAATGACACCCACCTTGCTTGGTCCGGGCTGTCATCCTTGCAGT	17	+	44187725-44187774	17p11	Rattus norvegicus Prolactin family 2, subfamily b, member 1 (Prl2b1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpk	Prlpk
Rattus norvegicus	RefSeq	GI_31542842-S	ILMN_269253	HOPX	NM_133621.2	NM_133621.2		171160	31542842	NM_133621.2	Hopx	NP_598305.2	ILMN_1363702	0004590019	S	873	ACACCCTCGTTTAGCAGCGACAGATTCCAAGGGGCAGAAAAGCAGGTAGC	14	+	33377789-33377838	14p11	Rattus norvegicus HOP homeobox (Hopx), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; The modification of histones by removal of acetyl groups [goid 16575] [evidence ISS]; Any process that activates or increase the rate of skeletal muscle regeneration [goid 43415] [evidence ISS]; Any process that activates or increase the rate of skeletal muscle regeneration [goid 43415] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of striated muscle cell differentiation [goid 51155] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of striated muscle cell differentiation [goid 51155] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Obl; GIIg15b	Obl; GIIg15b
Rattus norvegicus	RefSeq	GI_62647117-S	ILMN_51247	LOC500097	XM_575448.1	XM_575448.1		500097	62647117	XM_575448.1	LOC500097	XP_575448.1	ILMN_1362540	0004780364	S	1467	CTGGACATGAGAGACTTTACTGGTATCAGCAACACAGAGCCCAGGGGCCC					PREDICTED: Rattus norvegicus similar to T-cell receptor beta chain V region C5 precursor (LOC500097), mRNA.					
Rattus norvegicus	RefSeq	GI_16924007-S	ILMN_56509	SEC22L2	XM_579599.1	XM_579599.1		117513	62657826	XM_579599.1	Sec22l2	XP_579599.1	ILMN_1366022	0003940347	S	166	GGGACAGCGGCCTGCCTTTACCAGATGATTTGCCTTTGCCTTCAGGGGAG				11q22	PREDICTED: Rattus norvegicus sec22 homolog (Sec22l2), mRNA.					
Rattus norvegicus	RefSeq	GI_62651617-S	ILMN_50626	LOC288758	XM_222295.3	XM_222295.3		288758	62651617	XM_222295.3	LOC288758	XP_222295.2	ILMN_1351259	0000520731	S	3	GATCGGACTGGACCGAACCGGCACTTCGCAAACACAAAGATCAATGCAGC					PREDICTED: Rattus norvegicus similar to carbonic anhydrase 13 (LOC288758), mRNA.					
Rattus norvegicus	RefSeq	GI_62718243-S	ILMN_69771	LOC501315	XM_576728.2	XM_576728.2		501315	109513271	XM_576728.2	LOC501315	XP_576728.1	ILMN_1350946	0000510010	S	1399	GGATCTGGTAGAGTTAGTGGGACTTGGGAGTAGGAATGGGAGGAAGGGCC	Un|NW_047874.1	+	1842956-1843005		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC501315), mRNA.					
Rattus norvegicus	RefSeq	GI_62718185-S	ILMN_69771	LOC501315	XM_576728.2	XM_576728.2		501315	109513271	XM_576728.2	LOC501315	XP_576728.1	ILMN_1355926	0000780139	S	1476	TTCCATAAACCTGCTTAGCCAGCTCCTGATGGAGAACACATGTAGGAAGT	Un|NW_047874.1	+	1843033-1843082		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC501315), mRNA.					
Rattus norvegicus	RefSeq	GI_62650169-S	ILMN_296047	ATAD3A	NM_001034922.1	NM_001034922.1		298682	77917537	NM_001034922.1	Atad3a	NP_001030094.1	ILMN_1375075	0003710605	S	2276	GCATCCGAGAATCAGAGCTACCGCCATCCCCTTGACTGGATCTGGGCCTT	5	-	172598585-172598634	5q36	Rattus norvegicus ATPase family, AAA domain containing 3A (Atad3a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC124646	MGC124646
Rattus norvegicus	RefSeq	GI_62651390-S	ILMN_61258	LOC366765	XM_345752.2	XM_345752.2		366765	62651390	XM_345752.2	LOC366765	XP_345753.1	ILMN_1349363	0006760025	S	0	GAGAACACAGAACCTCACCATGGGATGGAGCCAGATCATCCTCTTTCTGG				6q33	PREDICTED: Rattus norvegicus similar to Ig H-chain (LOC366765), mRNA.					
Rattus norvegicus	RefSeq	GI_62655000-S	ILMN_264621	RGD1564447_PREDICTED	XM_001058987.1	XM_001058987.1		367254	109487022	XM_001058987.1	RGD1564447_predicted	XP_001058987.1	ILMN_1365341	0000840484	S	242	ACAGGCCTGGTACCGGGGCACTCGGTGAAACCAGATGCTATCAGAAGTTC				9q21	PREDICTED: Rattus norvegicus similar to Zgc:56193 (predicted) (RGD1564447_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11120683-S	ILMN_272906	PTMA	NM_021740.1	NM_021740.1		29222	11120683	NM_021740.1	Ptma	NP_068508.1	ILMN_1349244	0006860097	S	200	GGAGAAGAAGGAAGTTGTGGAGGAGGCAGAGAATGGAAGAGACGCACCTG	9	+	85293666-85293715	9q35	Rattus norvegicus prothymosin alpha (Ptma), mRNA.		A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence TAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IDA]			
Rattus norvegicus	RefSeq	GI_62642889	ILMN_272377	SEPP1	NM_019192.1	NM_019192.1		29360	9507086	NM_019192.1	Sepp1	NP_062065.2	ILMN_1649748	0004850717	S	2060	GTTGTTGCTAATACACTAAGTGCCCTGCTCAAAACCGCCTCCGAGTGAGG	2	+	52462335-52462384	2q16	Rattus norvegicus selenoprotein P, plasma, 1 (Sepp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The chemical reactions and pathways involving the nonmetallic element selenium or compounds that contain selenium, such as selenocysteine [goid 1887] [evidence IEA]; The chemical reactions and pathways involving the nonmetallic element selenium or compounds that contain selenium, such as selenocysteine [goid 1887] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence ISS]	Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62643214-S	ILMN_59698	ZFHX4_PREDICTED	XM_226964.4	XM_226964.4		310250	109464628	XM_226964.4	Zfhx4_predicted	XP_226964.4	ILMN_1366926	0003130403	S	12093	GCCCCTCCTTTCTCTGTGTCTAGTGCAGCAACAGTTTGGTCTGCATCTGT	2	-	98551239-98551288	2q24	PREDICTED: Rattus norvegicus zinc finger homeodomain 4 (predicted) (Zfhx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653116-S	ILMN_266000	ITGB7	XM_001067562.1	XM_001067562.1		25713	109482989	XM_001067562.1	Itgb7	XP_001067562.1	ILMN_1353551	0001450017	S	2339	GTGCGGTCACAACTACCGTCAACCCTCGCTTCCAAGGGGGCAACAAACAG				7q36	PREDICTED: Rattus norvegicus integrin, beta 7 (Itgb7), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence TAS]; A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence TAS]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62717954-S	ILMN_57578	LOC501264	XM_580181.1	XM_580181.1		501264	62717954	XM_580181.1	LOC501264	XP_580181.1	ILMN_1361046	0004060193	S	406	TGGGATTGGGGACAAGGTATGCTACAGGTACAAAGGAGGGTCCCAGTTGG					PREDICTED: Rattus norvegicus LOC501264 (LOC501264), mRNA.					
Rattus norvegicus	RefSeq	GI_16758939-S	ILMN_281430	SH2B2	NM_053669.1	NM_053669.1		114203	16758939	NM_053669.1	Sh2b2	NP_446121.1	ILMN_1374536	0002120176	S	2588	GGGTAGCAAGCCACGTCTATCAAGCCCATGAAGGCTTACCCACTGATTCC	12	+	21572005-21572054	12q12	Rattus norvegicus SH2B adaptor protein 2 (Sh2b2), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of regulating the proliferation and elimination of B cells of the B-1 subset such that the total number of B-1 B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity [goid 1922] [evidence ISS]; The process of regulating the proliferation and elimination of B cells of the B-1 subset such that the total number of B-1 B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity [goid 1922] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; Any process that modulates the frequency, rate or extent of Ras protein signal transduction [goid 46578] [evidence IDA]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence IEA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B or T cell [goid 50851] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B or T cell [goid 50851] [evidence IEA]	The binding activity of a molecule that brings together a transmembrane receptor protein kinase and one or more other molecules, permitting them to function in a coordinated way [goid 5068] [evidence ISS]; The binding activity of a molecule that brings together a transmembrane receptor protein kinase and one or more other molecules, permitting them to function in a coordinated way [goid 5068] [evidence IEA]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence ISS]; Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68) [goid 5070] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The binding activity of a molecule that brings together a molecule of the JAK signal transduction pathway and one or more other molecules of the pathway, permitting them to function in a coordinated way [goid 8269] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_31377495-S	ILMN_295285	SLC1A1	NM_013032.2	NM_013032.2		25550	31377495	NM_013032.2	Slc1a1	NP_037164.2	ILMN_1371607	0006220142	S	3651	TTGGCAGAGCTGTCCACGAGTTCACTGGGGTCATCCTTGTAACCAGCTGC	1	+	232551399-232551448	1q52	Rattus norvegicus solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 (Slc1a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]	Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + Na+(out) = glutamate(in) + Na+(in) [goid 15501] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + Na+(out) = glutamate(in) + Na+(in) [goid 15501] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + Na+(out) = glutamate(in) + Na+(in) [goid 15501] [evidence ISS]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]	Eaac1; Eaat3; REAAC1	Eaac1; Eaat3; REAAC1
Rattus norvegicus	RefSeq	GI_62638817-S	ILMN_281317	LENG4_PREDICTED	XM_001056203.1	XM_001056203.1		308309	109461022	XM_001056203.1	Leng4_predicted	XP_001056203.1	ILMN_1354751	0002810100	S	3056	ATGACCATCCCGCTGTGCCTGGCTGCTGAGGGCTATTTGGAGTCAGCCTT					PREDICTED: Rattus norvegicus leukocyte receptor cluster (LRC) member 4 (predicted) (Leng4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27732752-S	ILMN_67409	LOC297892	XM_232769.1	XM_232769.1		297892	27732752	XM_232769.1	LOC297892	XP_232769.1	ILMN_1362657	0002030347	S	175	CCGGGGAGACTGACAACCGGAGATTTCTGCAGGGAAAGGGTAGTAACCGC					PREDICTED: Rattus norvegicus similar to small nuclear ribonucleoprotein polypeptide G (LOC297892), mRNA.					
Rattus norvegicus	RefSeq	GI_9506820-S	ILMN_293880	ITPKB	NM_019312.1	NM_019312.1		54260	9506820	NM_019312.1	Itpkb	NP_062185.1	ILMN_1359923	0000130026	S	2711	CCTGTCTGAGCGCCTACCTAGAACAGAGCCTCCCATCTGCACTACAGGAC	13	+	96137935-96137984	13q26	Rattus norvegicus inositol 1,4,5-trisphosphate 3-kinase B (Itpkb), mRNA.		Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]; The process of T cell selection that occurs in the thymus [goid 45061] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell differentiation [goid 46638] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence ISS]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758293-S	ILMN_49649	TWIST1	NM_053530.2	NM_053530.2		85489	82617592	NM_053530.2	Twist1	NP_445982.1	ILMN_1367694	0007000451	S	651	ACTTCCTGTACCAGGTCCTGCAGAGCGACGAGCTGGACTCCAAGATGGCA	6	+	52606519-52606568	6q16	Rattus norvegicus twist gene homolog 1 (Drosophila) (Twist1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence ISS]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence IEA]; The process by which the anatomical structures of the hindlimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35137] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Twist	Twist
Rattus norvegicus	RefSeq	GI_62638632-S	ILMN_60590	RGD1560485_PREDICTED	XM_579915.2	XM_579915.2		499053	109457888	XM_579915.2	RGD1560485_predicted	XP_579915.2	ILMN_1372764	0004120138	S	720	CCACTTTCAAAGGACCTTCACTGTCACAGAACCGGCGCTATTTCAGTGCC	1	+	52815608-52815657	1q12	PREDICTED: Rattus norvegicus RGD1560485 (predicted) (RGD1560485_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557114-A	ILMN_291845	UBTD1	NM_001013153.1	NM_001013153.1		309373	61557114	NM_001013153.1	Ubtd1	NP_001013171.1	ILMN_1376485	0004730047	S	1717	GGCTTTATGGCAGAGGTTTGCACAGGGCTATCTCCAACTGTAACCCAGGC				1q54	Rattus norvegicus ubiquitin domain containing 1 (Ubtd1), mRNA.		The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62662992-S	ILMN_64040	RGD1308317_PREDICTED	XM_225044.4	XM_225044.4		306630	109503614	XM_225044.4	RGD1308317_predicted	XP_225044.3	ILMN_1372845	0005390537	S	1337	CCTCTTGATGGAGGGTGATGGTGTCTTTTCTGGGTGTGTGTCCATACCGG	16	-	84869197-84869246	16q12.5	PREDICTED: Rattus norvegicus similar to 1110065L07Rik protein (predicted) (RGD1308317_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591956-S	ILMN_280496	GNAQ	NM_031036.1	NM_031036.1		81666	13591956	NM_031036.1	Gnaq	NP_112298.1	ILMN_1355584	0004230286	S	870	CTACTTCCCAGAATATGATGGACCCCAGAGAGATGCCCAGGCAGCACGAG	1	+	219758740-219758759:219764211-219764240	1q43	Rattus norvegicus guanine nucleotide binding protein, alpha q polypeptide (Gnaq), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IMP]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IMP]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor [goid 7215] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor [goid 7215] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence IEA]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence IEA]; The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development [goid 16322] [evidence ISS]; The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development [goid 16322] [evidence IEA]; The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell [goid 21884] [evidence ISS]; The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell [goid 21884] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence IMP]; Any process that modulates the frequency, rate or extent of melanocyte differentiation [goid 45634] [evidence ISS]; Any process that modulates the frequency, rate or extent of melanocyte differentiation [goid 45634] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643901-S	ILMN_269377	PRPF3_PREDICTED	XM_001057756.1	XM_001057756.1		361995	109467178	XM_001057756.1	Prpf3_predicted	XP_001057756.1	ILMN_1353961	0006900433	S	2579	GTGATCTCAGAACCGTGCCAGGCTGATACTGGGGCAAAGAGACTACCAAG				2q34	PREDICTED: Rattus norvegicus PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) (Prpf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16923989-S	ILMN_296476	EPN1	NM_057136.1	NM_057136.1		117277	16923989	NM_057136.1	Epn1	NP_476477.1	ILMN_1351904	0002360433	S	1686	TACACCGCCAGGAGCCAAGGCTTCCAACCCATTCCTTCCAAGTGGAGCTC	1	-	67480297-67480304:67480472-67480513	1q12	Rattus norvegicus Epsin 1 (Epn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IDA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656631-S	ILMN_60453	LOC497965	XM_573155.1	XM_573155.1		497965	62656631	XM_573155.1	LOC497965	XP_573155.1	ILMN_1370139	0007000152	S	759	CCCAACCTCTTCACAGAATCTAGTCAGAATAACACCTCTGGCGTGCAGGT				10q26	PREDICTED: Rattus norvegicus similar to phosphoglycerate mutase (EC 5.4.2.1) B chain - rat (LOC497965), mRNA.					
Rattus norvegicus	RefSeq	GI_62658114-S	ILMN_49132	LOC363801	XM_577186.1	XM_577186.1		363801	62658114	XM_577186.1	LOC363801	XP_577186.1	ILMN_1363817	0001410541	S	119	TGAGATGCGTGCCCTCCAAAAGCTCACCCTGAGCAGCTTTGGCACAGGAG				11q22	PREDICTED: Rattus norvegicus similar to transcription elongation factor B (SIII), polypeptide 2 (LOC363801), mRNA.					
Rattus norvegicus	RefSeq	GI_62659225-S	ILMN_53498	TFCP2L1_PREDICTED	XM_222570.3	XM_222570.3		304741	62659225	XM_222570.3	Tfcp2l1_predicted	XP_222570.3	ILMN_1363428	0001850750	S	1873	GGCTCTGTCATCCTCACAGGGACAGCACGCACAGCTCTCCTCCTAATACT				13q11	PREDICTED: Rattus norvegicus transcription factor CP2-like 1 (predicted) (Tfcp2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659909-S	ILMN_299930	IARS2_PREDICTED	XM_001065536.1	XM_001065536.1		364070	109499221	XM_001065536.1	Iars2_predicted	XP_001065536.1	ILMN_1367076	0006860095	S	3030	GTCGTACCAACTGCCAGAGAGAAGTGCCCGCGATGTTGGAAGCATACCGC				13q26	PREDICTED: Rattus norvegicus isoleucine-tRNA synthetase 2, mitochondrial (predicted) (Iars2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654205-S	ILMN_68303	LOC501045	XM_576460.1	XM_576460.1		501045	62654205	XM_576460.1	LOC501045	XP_576460.1	ILMN_1374112	0004230064	S	276	CGGCAGCGTCCTTTGGTCGACAACCGGGTGATTCCTTGTATCAGGTTGAT					PREDICTED: Rattus norvegicus similar to hypothetical protein PB402898.00.0 (LOC501045), mRNA.					
Rattus norvegicus	RefSeq	GI_62654259-S	ILMN_48208	LOC501052	XM_576468.2	XM_576468.2		501052	109483868	XM_576468.2	LOC501052	XP_576468.1	ILMN_1354480	0001940097	S	1710	AACTGGGGCTGGTGCCAGTAGCTATGAGGAGCCCATCACCCCTTCTACAG	8	+	112813546-112813595	8q32	PREDICTED: Rattus norvegicus similar to Fus1 protein (LOC501052), mRNA.					
Rattus norvegicus	RefSeq	GI_11177887-S	ILMN_275244	LIN7C	NM_021851.1	NM_021851.1		60442	11177887	NM_021851.1	Lin7c	NP_068623.1	ILMN_1357731	0000070601	S	440	GTGTTGAAGGAGAGCACCATGAGAAAGCGGTGGAGCTACTGAAAGCAGCC	3	+	95335100-95335149	3q33	Rattus norvegicus lin-7 homolog C (C. elegans) (Lin7c), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]	Veli3	Veli3
Rattus norvegicus	RefSeq	GI_27659027-S	ILMN_263057	RGD1562561_PREDICTED	XM_001075764.1	XM_001075764.1		291971	109508791	XM_001075764.1	RGD1562561_predicted	XP_001075764.1	ILMN_1357750	0005130592	S	713	ACTTGACAGAGCCTGACTCCAGACACCAGTATTTGACAGAGCCTGACCCC				19q11	PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG24508 (predicted) (RGD1562561_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393072-S	ILMN_289515	CD37	NM_017124.1	NM_017124.1		29185	8393072	NM_017124.1	Cd37	NP_058820.1	ILMN_1360038	0007150743	S	845	CGATATTCCTGTGTAGAAATCTGGATCACGTCTATGACCGGCTGGCCCGG	1	-	95710224-95710273	1q22	Rattus norvegicus CD37 molecule (Cd37), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate, or extent of immunoglobulin production [goid 2639] [evidence ISS]; Any process that modulates the frequency, rate, or extent of a humoral immune response [goid 2920] [evidence ISS]		MRC OX-44	MRC OX-44
Rattus norvegicus	RefSeq	GI_62641275-S	ILMN_55258	ATXN2L_PREDICTED	XM_341928.3	XM_341928.3		361649	109459392	XM_341928.3	Atxn2l_predicted	XP_341929.3	ILMN_1356107	0003610687	S	3693	GAATTCCTGCCAAGCACCTTGAACGGGAGGGGTCCTTCAAGTGGGCCGGG	1	-	185636114-185636163	1q36	PREDICTED: Rattus norvegicus ataxin 2-like (predicted) (Atxn2l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667518-S	ILMN_66914	LOC501659	XM_577055.1	XM_577055.1		501659	62667518	XM_577055.1	LOC501659	XP_577055.1	ILMN_1349909	0004540332	S	1784	GTTGAGTCCAAGCATTGTATGAAGTGCCCGTGATTCTACCAGCTAATTTG				Xq37	PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 12 (LOC501659), mRNA.					
Rattus norvegicus	RefSeq	GI_40217851-S	ILMN_299269	KITL	NM_021843.2	NM_021843.2		60427	40217851	NM_021843.2	Kitl	NP_068615.1	ILMN_1366908	0002810438	S	697	TCCAGAGTCAGTGTCACAAAACCATTTATGTTACCCCCTGTTGCAGCCAG	7	+	37776931-37776980	7q13	Rattus norvegicus kit ligand (Kitl), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IDA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of myeloid leukocyte differentiation [goid 2763] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of melanocyte differentiation [goid 45636] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]	Interacting selectively with the stem cell factor receptor (SCFR), a type III transmembrane kinase receptor [goid 5173] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Kl1; SCF; Kl2	Kl1; SCF; Kl2
Rattus norvegicus	RefSeq	GI_8394029-S	ILMN_271084	PPP3CA	NM_017041.1	NM_017041.1		24674	8394029	NM_017041.1	Ppp3ca	NP_058737.1	ILMN_1372414	0004590131	S	1832	CAGCAGTTGGATGTTCTTGCCTCTGACGGTAGCTTGTTTGCTCTGGGGGG	2	+	234408730-234408779	2q43	Rattus norvegicus protein phosphatase 3, catalytic subunit, alpha isoform (Ppp3ca), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin [goid 5955] [evidence IDA]; A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin [goid 5955] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEP]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence ISS]; The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48741] [evidence ISS]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IDA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IDA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate, dependent on the presence of calcium ions [goid 4723] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Calna1	Calna1
Rattus norvegicus	RefSeq	GI_62654643-S	ILMN_68053	KIF6	XM_343524.3	XM_343524.3		171291	109485687	XM_343524.3	Kif6	XP_343525.3	ILMN_1371206	0001050551	S	1558	CAGAGAAAAGCGAAGCTAGGCCACCTCCGAACTCGCCCTTCATTGCTGGG	9	-	6432090-6432139	9q11	PREDICTED: Rattus norvegicus kinesin family member 6 (Kif6), mRNA.	The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence IDA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660961-S	ILMN_66900	ASB3_PREDICTED	XM_344277.3	XM_344277.3		364227	109500157	XM_344277.3	Asb3_predicted	XP_344278.3	ILMN_1362197	0006200647	S	1326	GGCCTGGTTGCCACATCTCCTGCTTGCTGGATTTGACCCATTGATTCTGC	14	+	112172126-112172175	14q22	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing protein 3 (predicted) (Asb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31542400-S	ILMN_281465	CKB	NM_012529.2	NM_012529.2		24264	31542400	NM_012529.2	Ckb	NP_036661.2	ILMN_1370888	0005860397	S	1236	AAGTGAAGCCGTGGCCCTAGCCACCACCAGGCTGCCGCTTCCTAACTTAT	6	-	136452370-136452412:136452413-136452419	6q32	Rattus norvegicus creatine kinase, brain (Ckb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]	The chemical reactions and pathways involving creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle [goid 6600] [evidence ISS]; The chemical reactions and pathways involving phosphocreatine, a phosphagen of creatine present in high concentration in striated muscle which is synthesized and broken down by creatine phosphokinase to buffer ATP concentration. It acts as an immediate energy reserve for muscle [goid 6603] [evidence TAS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The regulation of the levels, transport, and metabolism of chloride ions within a cell or between a cell and its external environment [goid 30644] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence TAS]; Catalysis of the reaction: ATP + creatine = ADP + phosphocreatine [goid 4111] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Ckbr; RATCKBR; Ckbb	Ckbr; RATCKBR; Ckbb
Rattus norvegicus	RefSeq	GI_13928891-S	ILMN_295390	RAMP2	XM_001081831.1	XM_001081831.1		58966	109519552	XM_001081831.1	Ramp2	XP_001081831.1	ILMN_1362437	0004850600	S	219	GGAGTACGAGGCAGACAAGTTTGGCCTGGGCTTCCCAAATCCCTTGGCAG				10q32.1	PREDICTED: Rattus norvegicus receptor (calcitonin) activity modifying protein 2 (Ramp2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA];  [goid 15027] [evidence IDA];  [goid 15027] [evidence IEA];  [goid 15027] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_62661246-S	ILMN_289308	PSMC6	XM_001072705.1	XM_001072705.1		289990	109502280	XM_001072705.1	Psmc6	XP_001072705.1	ILMN_1366987	0004760750	S	1631	TCTAGACCTTTTGGATCAGTAAGTACATGATTTGAGAGCCTGGGAAACTG				15p14	PREDICTED: Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase, 6 (Psmc6), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IEA]; A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646589-S	ILMN_48274	LOC308525	XM_218517.2	XM_218517.2		308525	62646589	XM_218517.2	LOC308525	XP_218517.2	ILMN_1371271	0003170040	S	285	GCAGGGGTCGGGGAGCTGCGAAGAGATACAAATGCAGACAAAAGACAGAC					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L27a (LOC308525), mRNA.					
Rattus norvegicus	RefSeq	GI_8393001-S	ILMN_279699	BTG2	NM_017259.1	NM_017259.1		29619	8393001	NM_017259.1	Btg2	NP_058955.1	ILMN_1368809	0002360358	S	2240	GTCCACACACAGGTCCCCGCCTTTTTAGAAGCAGCCTCCTGGTCTCATGC	13	-	47027215-47027264	13q13	Rattus norvegicus B-cell translocation gene 2, anti-proliferative (Btg2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence ISS]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus [goid 51602] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tis21; Pc3; Agl; an-1; An	Tis21; Pc3; Agl; an-1; An
Rattus norvegicus	RefSeq	GI_47577746-S	ILMN_286369	OLR1253	NM_001000805.1	NM_001000805.1		405091	47577746	NM_001000805.1	Olr1253	NP_001000805.1	ILMN_1359364	0007040707	S	668	CCAACATCTTCCACATCAGCTCTTCGGAAGGACGTTCCAAAGCTTTCAGC	8	-	40782705-40782754	8q22	Rattus norvegicus olfactory receptor 1253 (Olr1253), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1253	Olr1253
Rattus norvegicus	RefSeq	GI_62641892-S	ILMN_63711	MS4A7_PREDICTED	XM_215200.3	XM_215200.3		293744	109459907	XM_215200.3	Ms4a7_predicted	XP_215200.1	ILMN_1357510	0003390176	S	772	TGGTGGAAGCAAGTCTACTCCAACAAGCCTGGGGGTGCATTTTTCTTGCC	1	-	213829017-213829034:213829681-213829712	1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 7 (predicted) (Ms4a7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656237-S	ILMN_55779	DNAH9	XM_213354.4	XM_213354.4		117251	109488301	XM_213354.4	Dnah9	XP_213354.4	ILMN_1365266	0005420504	S	7441	TGCTGGGACACACAGGCTGGGATCATTGCGGAGGCGAAACTGAAGGACCT	10	+	52514079-52514093:52516486-52516520	10q24	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 9 (Dnah9), mRNA.	Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659532-S	ILMN_55303	HLALS_MAPPED	XM_213919.4	XM_213919.4		25119	109498041	XM_213919.4	Hlals_mapped	XP_213919.4	ILMN_1349970	0000770706	S	1065	CTCTGCTCTCAGGCACCCACGTGTCTCAGCCAAACTCCTGACACGGGATT	13	-	70089999-70090048	13q21	PREDICTED: Rattus norvegicus MHC class I-like sequence (mapped) (Hlals_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_13540639-A	ILMN_267378	SLC21A4	NM_030837.1	NM_030837.1		80899	13540639	NM_030837.1	Slc21a4	NP_110464.1	ILMN_1376681	0004050403	S	2066	GGAAATTGCAGAGATGAAGCTCACAGAGAAGGAAAGCCAGTGCACAGATG	4	-	179553323-179553372	4q44	Rattus norvegicus kidney specific organic anion transporter (Slc21a4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence TAS]; The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells [goid 15893] [evidence IDA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence TAS]; Enables the directed movement of methotrexate, 4-amino-10-methylformic acid, into, out of, within or between cells. Methotrexate is a folic acid analogue and a potent competitive inhibitor of dihydrofolate reductase [goid 15350] [evidence IDA]	rOAT-K2; rOAT-K5; Slco1a3; rOAT-K14; rOAT-K1; rOAT-K7; rOAT-K6; OAT-K1; rOAT-K13; rOAT-K9; rOAT-K8; OAT-K2; rOAT-K3; rOAT-K11	rOAT-K2; rOAT-K5; Slco1a3; rOAT-K14; rOAT-K1; rOAT-K7; rOAT-K6; OAT-K1; rOAT-K13; rOAT-K9; rOAT-K8; OAT-K2; rOAT-K3; rOAT-K11
Rattus norvegicus	RefSeq	GI_62663772-S	ILMN_67787	PITRM1_PREDICTED	XM_225517.4	XM_225517.4		307081	109505086	XM_225517.4	Pitrm1_predicted	XP_225517.4	ILMN_1369497	0003440520	S	3005	GCTGACCTCTGTGAGCCATAAATACCTCGGCATCGGGAAGAGCACGCACG	17	-	74825070-74825099:74825222-74825241	17q12.2	PREDICTED: Rattus norvegicus pitrilysin metallepetidase 1 (predicted) (Pitrm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644007-S	ILMN_289530	LOC365861	XR_006636.1	XR_006636.1		365861	109465203	XR_006636.1	LOC365861		ILMN_1354073	0000110070	S	668	TCTGGGATCCAATGCAGATGTTGGCAGAAGACCTAGGAGAGCTGTGGGAA	2	-	188953547-188953596	2q34	PREDICTED: Rattus norvegicus similar to TD and POZ domain containing 5 (LOC365861), mRNA.					
Rattus norvegicus	RefSeq	GI_62665856-S	ILMN_69200	VPREB3_PREDICTED	XM_345093.3	XM_345093.3		365550	109509341	XM_345093.3	Vpreb3_predicted	XP_345094.3	ILMN_1354620	0002470398	S	679	GGTAGAGAAACAGGAACCAACACTTGCCACCCCCCTCCAGTTCCGCATGG	20	-	13116122-13116171	20p12	PREDICTED: Rattus norvegicus pre-B lymphocyte gene 3 (predicted) (Vpreb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643505-S	ILMN_50781	LOC295083	XM_227200.3	XM_227200.3		295083	62643505	XM_227200.3	LOC295083	XP_227200.3	ILMN_1367897	0000050603	S	215	GAAGTGGCGTATGAGGCCGCAACTTGAAGAATCCATGAGACGGCTCTTCG					PREDICTED: Rattus norvegicus similar to DOCK2 protein (LOC295083), mRNA.					
Rattus norvegicus	RefSeq	GI_20376817-S	ILMN_280715	WBP2	NM_138975.1	NM_138975.1		192645	20376817	NM_138975.1	Wbp2	NP_620431.1	ILMN_1352211	0006660070	S	683	CTGCCAGCGCCTATTACAACCCGGGCAACCCACACAATGTCTACATGCCC	10	-	106187295-106187344	10q32.3	Rattus norvegicus WW domain binding protein 2 (Wbp2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62666551	ILMN_283536	DYNLT3	NM_001013228.1	NM_001013228.1		363448	61557354	NM_001013228.1	Dynlt3	NP_001013246.1	ILMN_1651019	0001190692	S	1733	AGTGGCAACAGCGAAACAGGATTCTTGTATGAGGACTCCGTGCATGGCTG	X	+	25490163-25490212	Xq13	Rattus norvegicus dynein light chain Tctex-type 3 (Dynlt3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656065-S	ILMN_69521	RGD1308066_PREDICTED	XM_213289.4	XM_213289.4		287285	109488095	XM_213289.4	RGD1308066_predicted	XP_213289.4	ILMN_1360523	0004050500	S	2961	CTGGAGGTGAGAAGCTGGAGAGACGGCCCAGGAGTTAAGACCACTTGCTG	10	+	38934841-38934890	10q22	PREDICTED: Rattus norvegicus similar to KIAA1960 protein (predicted) (RGD1308066_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34932483-S	ILMN_55225	MRPS21_PREDICTED	XM_344706.2	XM_344706.2		364906	109506831	XM_344706.2	Mrps21_predicted	XP_344707.1	ILMN_1353320	0001770242	S	121	CGACGACGCTACTATGAGAAGCCTTACGTCATAAAGCGACGACGCTACTA	18	+	76893142-76893191	18q12.3	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S21 (predicted) (Mrps21_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17978454-S	ILMN_69297	MAGED2	NM_080479.2	NM_080479.2		113947	78042584	NM_080479.2	Maged2	NP_536727.2	ILMN_1370696	0003840446	S	1763	TGGCACTGCTGGTTCTGGTGCTAATGCTGGGGCCAGTGGGGGCTTCAGTA	X	-	40056725-40056774	Xq21	Rattus norvegicus melanoma antigen, family D, 2 (Maged2), mRNA.				MGC124946	MGC124946
Rattus norvegicus	RefSeq	GI_12083594-S	ILMN_285099	GRM4	NM_022666.1	NM_022666.1		24417	12083594	NM_022666.1	Grm4	NP_073157.1	ILMN_1349372	0005340100	S	3794	GGGGCAGTTCCAGGTTATGCCACACACAGGTCTTCCTTCTGGACCACTGT				20p12	Rattus norvegicus glutamate receptor, metabotropic 4 (Grm4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The membrane portion of the presynaptic active zone; it is the site where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters [goid 48787] [evidence IDA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence ISS]; The series of molecular signals generated as a consequence of a metabotropic glutamate receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7196] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence TAS]; The regulated release of gamm-aminobutyric acid by a cell or group of cells. The gamma-aminobutyric acid is the principal inhibitory neurotransmitter in the brain but is also found in several extraneural tissues [goid 14051] [evidence TAS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence TAS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50805] [evidence TAS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 51932] [evidence TAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758591-S	ILMN_270803	ATP5G3	NM_053756.1	NM_053756.1		114630	16758591	NM_053756.1	Atp5g3	NP_446208.1	ILMN_1354415	0006840161	S	278	GGGGCCCAGAATGGTGTGTCTCAGCTAATCCAAAGGGAGTTTCAGACCAG	3	-	56512551-56512600	3q23	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) (Atp5g3), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663421-S	ILMN_53509	SLC35B3_PREDICTED	XM_225253.4	XM_225253.4		306866	109504831	XM_225253.4	Slc35b3_predicted	XP_225253.4	ILMN_1355258	0001230463	S	1375	TACATTCTGTTGGGATTGTCATGCACCAGTGGACTGGGTCCTGCACTGGC	17	+	31931986-31932035	17p12	PREDICTED: Rattus norvegicus solute carrier family 35, member B3 (predicted) (Slc35b3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665834-S	ILMN_68243	COL6A2_PREDICTED	XM_342115.2	XM_342115.2		361821	62665834	XM_342115.2	Col6a2_predicted	XP_342116.2	ILMN_1374841	0003940324	S	2461	GTCCAGAACTTCCCTGCCAAACAGATGAACCATGGCCCGGGAACAAGCCC				20p12	PREDICTED: Rattus norvegicus procollagen, type VI, alpha 2 (predicted) (Col6a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19923704-S	ILMN_278514	IL1R1	NM_013123.2	NM_013123.2		25663	19923704	NM_013123.2	Il1r1	NP_037255.2	ILMN_1356797	0006350050	S	2030	CCCTGGATCCTGTGCTGGACACTAAGGAGAAACTGCAGGCGGAGACACAC	9	+	39473483-39473532	9q21	Rattus norvegicus interleukin 1 receptor, type I (Il1r1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IPI]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response [goid 4908] [evidence IPI]; Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response [goid 4908] [evidence ISS];  [goid 4909] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560124-S	ILMN_293788	NPFFR1	NM_022291.1	NM_022291.1		64107	11560124	NM_022291.1	Npffr1	NP_071627.1	ILMN_1363948	0006040452	S	883	ATCGACTATGGGGAGCTGAGCGAGCTGCAACTGCACCTGCTGTCGGTCTA	20	+	28994785-28994834	20q11	Rattus norvegicus neuropeptide FF receptor 1 (Npffr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence IEA]	NPFF1; Gpr147; OT7T022	NPFF1; Gpr147; OT7T022
Rattus norvegicus	RefSeq	GI_62642324-S	ILMN_58736	NKX2-3_PREDICTED	XM_219880.4	XM_219880.4		309389	109460137	XM_219880.4	Nkx2-3_predicted	XP_219880.3	ILMN_1361749	0006380725	S	1297	CACCGGCGGCGGATCTTTTGTGAACGTGGGCAACCTGGGAGGCTTCGGCA	1	-	247221557-247221606	1q54	PREDICTED: Rattus norvegicus NK2 transcription factor related, locus 3 (Drosophila) (predicted) (Nkx2-3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642512-S	ILMN_68021	RGD1307158_PREDICTED	XM_342067.3	XM_342067.3		361773	109460276	XM_342067.3	RGD1307158_predicted	XP_342068.3	ILMN_1357394	0001190736	S	1494	CCGGCAGAAAGCCGAGATCCAGAATGTATGGGACAAGGTGAAGGCCGCAC	1	-	263104686-263104735	1q55	PREDICTED: Rattus norvegicus similar to oocyte-testis gene 1 (predicted) (RGD1307158_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656182-S	ILMN_52811	SHMT1	XM_213324.4	XM_213324.4		287379	109488169	XM_213324.4	Shmt1	XP_213324.3	ILMN_1356184	0002320110	S	3213	CAGACTGTGTTGTTTACTGCAGCTACGATGTGCTCTGACCAGCCTGCAGC	10	-	46935388-46935437	10q22	PREDICTED: Rattus norvegicus serine hydroxymethyl transferase 1 (soluble) (Shmt1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence IDA]; The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence TAS]; The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid [goid 6545] [evidence IDA]; The chemical reactions and pathways involving L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6563] [evidence TAS]; The chemical reactions and pathways involving L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6563] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6565] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6565] [evidence ISS]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]; The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine [goid 9113] [evidence IEA]; The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine [goid 9113] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine [goid 19264] [evidence IDA]; The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 46655] [evidence IEA]; The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 46655] [evidence ISS]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence IEA]; The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits [goid 51262] [evidence ISS]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence IDA]; The chemical reactions and pathways involving glycine, aminoethanoic acid [goid 6544] [evidence IEA]; The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IDA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence TAS]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IEA]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence ISS]; Catalysis of the reaction: L-allo-threonine = glycine + acetaldehyde [goid 8732] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IPI]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence TAS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine [goid 4372] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665032-S	ILMN_283851	RFX1_PREDICTED	XM_001068588.1	XM_001068588.1		288906	109508559	XM_001068588.1	Rfx1_predicted	XP_001068588.1	ILMN_1374549	0002260050	S	5238	TCACTATTTTGTGTGCTCCGCGTGCTACAGCTTTTGGGGTGGTCCTGCAC				19q11	PREDICTED: Rattus norvegicus regulatory factor X, 1 (influences HLA class II expression) (predicted) (Rfx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657110-S	ILMN_273004	RGD1561684_PREDICTED	XM_577125.1	XM_577125.1		501721	62657110	XM_577125.1	RGD1561684_predicted	XP_577125.1	ILMN_1351813	0006550193	S	3	GATCATGTGCCTAGGGGTCATCAGCACTGTCCAGGTATATAAAGGGACCC	10	-	88576141-88576190	10q32.1	PREDICTED: Rattus norvegicus similar to keratin associated protein 2-4 (predicted) (RGD1561684_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658847-S	ILMN_51273	CDK2AP1_PREDICTED	XM_341076.3	XM_341076.3		360804	109495865	XM_341076.3	Cdk2ap1_predicted	XP_341077.2	ILMN_1369636	0001850373	S	962	CTCTGAGGAGTTGAGTGCAGACCACAGCACGTTTGCTTAGTAGCTGGCCT	12	+	33374274-33374323	12q15	PREDICTED: Rattus norvegicus CDK2 (cyclin-dependent kinase 2)-associated protein 1 (predicted) (Cdk2ap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978586-S	ILMN_273368	CALCRL	NM_012717.1	NM_012717.1		25029	6978586	NM_012717.1	Calcrl	NP_036849.1	ILMN_1365317	0001170309	S	1668	TACGGTGTCAACAATCAGCGATGTGCAGGGGTACAGCCACGACTGCCCCA	3	-	67553399-67553448	3q24	Rattus norvegicus calcitonin receptor-like (Calcrl), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IC ]	Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IMP]	 [goid 1635] [evidence ISS];  [goid 1635] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with calcitonin to initiate a change in cell activity [goid 4948] [evidence IMP]; Combining with calcitonin to initiate a change in cell activity [goid 4948] [evidence IEA]	RATCRLR; CLR; RNCLR; Crlr	RATCRLR; CLR; RNCLR; Crlr
Rattus norvegicus	RefSeq	GI_13591950-S	ILMN_302951	GNA11	NM_031033.1	NM_031033.1		81662	13591950	NM_031033.1	Gna11	NP_112295.1	ILMN_1361160	0001770286	S	846	GATCCTGCACTCACACTTGGTCGACTACTTCCCCGAGTTCGATGGGCCAC	7	+	9662155-9662198:9662302-9662307	7q11	Rattus norvegicus guanine nucleotide binding protein, alpha 11 (Gna11), mRNA.		The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IEA]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence ISS]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor [goid 7215] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that modulates the frequency, rate or extent of melanocyte differentiation [goid 45634] [evidence IEA]; Any process that modulates the frequency, rate or extent of melanocyte differentiation [goid 45634] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence IEA]; The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 60158] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence TAS]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642832-S	ILMN_275174	MARVELD2_PREDICTED	XM_001062343.1	XM_001062343.1		365657	109465857	XM_001062343.1	Marveld2_predicted	XP_001062343.1	ILMN_1369273	0002480333	S	1446	AAGGAGCTGTCTGCGGAAGTGCAGGCCACCCTGAGGAAGTTTGACGAGCT				2q12	PREDICTED: Rattus norvegicus MARVEL (membrane-associating) domain containing 2 (predicted) (Marveld2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11024653-S	ILMN_300825	PRL8A4	NM_021580.1	NM_021580.1		59088	11024653	NM_021580.1	Prl8a4	NP_067591.1	ILMN_1371406	0000060575	S	350	GCTGGAATTTACTGCCATTCAACTCTTGCAAAACCCCAAACTAGGGGAGG	17	+	44019691-44019740	17p11	Rattus norvegicus prolactin family 8, subfamily a, member 4 (Prl8a4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlph	Prlph
Rattus norvegicus	RefSeq	GI_34855426-S	ILMN_265630	LOC686548	XM_001074688.1	XM_001074688.1		686548	109461311	XM_001074688.1	LOC686548	XP_001074688.1	ILMN_1354802	0006840438	S	179	CAGCTCACCCAGCAGTTGACGCAGGCCACCGGCAAGCCGGCACAGTACAT					PREDICTED: Rattus norvegicus similar to Macrophage migration inhibitory factor (MIF) (Phenylpyruvate tautomerase) (Glycosylation-inhibiting factor) (GIF) (Delayed early response protein 6) (DER6) (LOC686548), mRNA.					
Rattus norvegicus	RefSeq	GI_62652835-S	ILMN_66331	LOC300097	XM_235514.2	XM_235514.2		300097	62652835	XM_235514.2	LOC300097	XP_235514.2	ILMN_1370843	0000580193	S	1225	ATACGGAGTCCTACCTGCTGGCTACCCCTATGGGCTATGGAGTCCCACCT					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC26816 (predicted) (LOC300097), mRNA.					
Rattus norvegicus	RefSeq	GI_55741535-S	ILMN_272249	FAM108A1	NM_001006983.1	NM_001006983.1		299617	55741535	NM_001006983.1	Fam108a1	NP_001006984.1	ILMN_1352036	0003360551	S	1233	ATCTCCCAGGAGCTGCCCAGCCAACGCACCTAACCAAGCCACAGGGACCT	7	+	10641706-10641738:10641739-10641755	7q11	Rattus norvegicus family with sequence similarity 108, member A1 (Fam108a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC94549	MGC94549
Rattus norvegicus	RefSeq	GI_62662394-S	ILMN_270710	RGD1563946_PREDICTED	XR_008586.1	XR_008586.1		306340	109503941	XR_008586.1	RGD1563946_predicted		ILMN_1374159	0004920427	S	2575	ATCCGAAGTGATGCCTTCAAGCTCTGCACTGGCCTACAGCGGCCCTTTGG				16p14	PREDICTED: Rattus norvegicus similar to mKIAA1623 protein (predicted) (RGD1563946_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659952-S	ILMN_301028	RGD1561704_PREDICTED	XR_009559.1	XR_009559.1		289358	109499233	XR_009559.1	RGD1561704_predicted		ILMN_1367051	0005050706	S	495	GAAGGCCGAAGTCATCAGCAGAGGAGCTGAAGAGAAAAGGGTGCTGGAGG				13q26	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L27a (L29) (predicted) (RGD1561704_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651434-S	ILMN_63829	LOC362763	XM_343089.2	XM_343089.2		362763	62651434	XM_343089.2	LOC362763	XP_343090.2	ILMN_1369259	0006400133	S	480	AATCACTCCACTGCCTCTGCAGCCTCGGAACAGCATTTGGGCTTGACCCG				6q31	PREDICTED: Rattus norvegicus similar to CG15929-PA (predicted) (LOC362763), mRNA.					
Rattus norvegicus	RefSeq	GI_62079180-S	ILMN_283009	DNASE1L1	NM_001014223.2	NM_001014223.2		363522	84662731	NM_001014223.2	Dnase1l1	NP_001014245.2	ILMN_1357541	0002690204	S	1067	CATTATCCTGTGGAAGTGGAACTGAACAAGGCAGCTCAGGGTATCCCACC	X	+	160336002-160336051	Xq37	Rattus norvegicus deoxyribonuclease 1-like 1 (Dnase1l1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one [goid 6308] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one [goid 6308] [evidence IEA]	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667264-S	ILMN_294775	RGD1564595_PREDICTED	XM_001069622.1	XM_001069622.1		503465	109512341	XM_001069622.1	RGD1564595_predicted	XP_001069622.1	ILMN_1361023	0000130332	S	1024	CCGTTTTACCATCTCCTGCAGAATATCTCTGGCACCTTACAGCACCTGGC				Xq35	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930481M05 (predicted) (RGD1564595_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650553-S	ILMN_65503	LOC366573	XM_578534.1	XM_578534.1		366573	62650553	XM_578534.1	LOC366573	XP_578534.1	ILMN_1351469	0001940075	S	269	GTCTGGGTCAGCCAACATGCTCCACGTAATGCCTACAGTTTCTGCCCCTT					PREDICTED: Rattus norvegicus similar to 8.2 kDa differentiation factor (LOC366573), mRNA.					
Rattus norvegicus	RefSeq	GI_62659616-S	ILMN_59469	F5_MAPPED	XM_222831.4	XM_222831.4		304929	109498120	XM_222831.4	F5_mapped	XP_222831.4	ILMN_1371753	0005570019	S	6396	CAAGAAGGTAACGGCCATCGTAACTCAGGGTTGCAAGTCTCTGTCCTCTG	13	+	79995758-79995807	13q22	PREDICTED: Rattus norvegicus coagulation factor 5 (mapped) (F5_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62638568-S	ILMN_291474	RGD1563490_PREDICTED	XM_574318.1	XM_574318.1		499025	62638564	XM_574318.1	RGD1563490_predicted	XP_574318.1	ILMN_1371840	0004590053	S	679	CCGCTACTCCGAAGGCAAATTGTGTTAGGGACGTACGTTGTCCCACCTGG	1	+	47909898-47909947	1q11	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1563490_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556831-S	ILMN_277331	APRT	NM_001013061.1	NM_001013061.1		292072	61556831	NM_001013061.1	Aprt	NP_001013079.1	ILMN_1364880	0000770037	S	254	TCATCCGTAAGCGCGGGAAGCTACCAGGCCCCACTGTATCAGCCTCCTAT	19	-	52855199-52855248	19q12	Rattus norvegicus adenine phosphoribosyl transferase (Aprt), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence ISS]; Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence IEA]; Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis [goid 6168] [evidence ISS]; Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis [goid 6168] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence IDA]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence ISS]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence IEA]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine [goid 46083] [evidence ISS]	Interacting selectively with adenine, a purine base [goid 2055] [evidence ISS]; Interacting selectively with adenine, a purine base [goid 2055] [evidence IEA]; Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 3999] [evidence ISS]; Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 3999] [evidence IEA]; Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 3999] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IEA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	APRT	APRT
Rattus norvegicus	RefSeq	GI_34865876-S	ILMN_70038	GRM2	XM_343470.2	XM_343470.2		24415	109483934	XM_343470.2	Grm2	XP_343471.1	ILMN_1356100	0001580551	S	3119	TAGAACAGTGTGGCTGAGGACGACAGGCCCAACCCCCATGCAAAGGTGCT	8	-	111838519-111838568	8q32	PREDICTED: Rattus norvegicus glutamate receptor, metabotropic 2 (Grm2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; The regulated release of glutamate by a cell or group of cells. The glutamate is the most abundant excitatory neurotransmitter in the nervous system [goid 14047] [evidence IDA]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence NAS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51966] [evidence NAS]	A G-protein coupled receptor that is activated by trans-1-aminocyclopentane-1,3-dicarboxylic acid (t-ACPD) and inhibits adenylate cyclase activity [goid 1641] [evidence IMP]; A G-protein coupled receptor that is activated by trans-1-aminocyclopentane-1,3-dicarboxylic acid (t-ACPD) and inhibits adenylate cyclase activity [goid 1641] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 5246] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654661-S	ILMN_68996	RGD1560271_PREDICTED	XM_576512.2	XM_576512.2		501097	109485682	XM_576512.2	RGD1560271_predicted	XP_576512.1	ILMN_1362965	0000130446	S	706	GTCAGCCTCACAGGTTCCCCTCCAGGCTCAGGAAGATTGCTGTGTCCACT	9	+	8636148-8636182:8640563-8640577	9q12	PREDICTED: Rattus norvegicus similar to inhibitor of MyoD family-a (predicted) (RGD1560271_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758325-S	ILMN_280820	VAMP5	NM_053555.1	NM_053555.1		89818	16758325	NM_053555.1	Vamp5	NP_446007.1	ILMN_1349299	0006040280	S	70	TTCGACAAGGTCCTGGAACGCGATGGGAAGCTGTCAGAGTTGCAGCAGCG	4	-	105674771-105674820	4q33	Rattus norvegicus vesicle-associated membrane protein 5 (Vamp5), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62655323-S	ILMN_57314	SLC19A3_PREDICTED	XM_237332.4	XM_237332.4		316559	109486290	XM_237332.4	Slc19a3_predicted	XP_237332.4	ILMN_1352427	0001780400	S	1503	CTCAGCTAAGTGCCGAAAGGAAGTGCAGAACCTTGCTACCACCCAGAGCC	9	-	82323740-82323789	9q34	PREDICTED: Rattus norvegicus solute carrier family 19, member 3 (predicted) (Slc19a3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658344-S	ILMN_66249	LOC288396	XM_221799.3	XM_221799.3		288396	62658344	XM_221799.3	LOC288396	XP_221799.3	ILMN_1354267	0000780300	S	2165	CCGCTCTTACTGTGCTTCAAGGACCAAAACTAGTGTATACAAGGATGGGG				12p12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC288396), mRNA.					
Rattus norvegicus	RefSeq	GI_56090394-S	ILMN_277424	RGD1359191	NM_001007706.1	NM_001007706.1		314462	56090394	NM_001007706.1	RGD1359191	NP_001007707.1	ILMN_1360648	0001410750	S	1681	CAGTATGTGGCTGGCTTCACGGGAGTTTCATATTGGTGCGAGGCTGCCCT	6	+	136465898-136465947	6q32	Rattus norvegicus GCD14/PCMT domain containing protein (RGD1359191), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methyladenine [goid 16429] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Trm61; Gcd14; MGC94251	Trm61; Gcd14; MGC94251
Rattus norvegicus	RefSeq	GI_25742647-S	ILMN_59941	FGL2	NM_053455.1	NM_053455.1		84586	25742647	NM_053455.1	Fgl2	NP_445907.1	ILMN_1359590	0006510168	S	1173	TAACCAGAGATACAAAGGGGTCCGTAATGGGATTTTCTGGGGCACCTGGC				4q11	Rattus norvegicus fibrinogen-like 2 (Fgl2), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs [goid 7567] [evidence TAS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_16258808-S	ILMN_278433	ZFP354A	NM_052798.1	NM_052798.1		24522	16258808	NM_052798.1	Zfp354a	NP_434685.1	ILMN_1371674	0000430286	S	2254	TCCTGGCTACCGGGGACCCTGAGGATTGCTTGACTCCACAAGTTTGAAGA	10	+	36665366-36665415	10q22	Rattus norvegicus zinc finger protein 354A (Zfp354a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA];  [goid 7576] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus [goid 51593] [evidence IEP]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any activity that stops or downregulates transcription of genes globally, and is not specific to a particular gene or gene set [goid 16565] [evidence IMP]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Tcf17; Znf354a; Kid1	Tcf17; Znf354a; Kid1
Rattus norvegicus	RefSeq	GI_54114990-S	ILMN_269669	MTMR9	NM_001005761.1	NM_001005761.1		282584	54114990	NM_001005761.1	Mtmr9	NP_001005761.1	ILMN_1363590	0001940176	S	1842	GGCAGTTGGCTGAATTGGAAACAGAGGATGGGCTACGAGAGAGTCCCTGA	15	-	42787969-42787969:42787970-42788018	15p12	Rattus norvegicus myotubularin related protein 9 (Mtmr9), mRNA.		The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Modulates the activity of an enzyme [goid 30234] [evidence IEA]; Modulates the activity of an enzyme [goid 30234] [evidence ISS]	MGC94471	MGC94471
Rattus norvegicus	RefSeq	GI_62654516-S	ILMN_60995	LOC316087	XM_236722.3	XM_236722.3		316087	62654516	XM_236722.3	LOC316087	XP_236722.3	ILMN_1369139	0001660368	S	2202	GGAGTTGGCTGTCTTCTGGGCGAGGAGGCACTGAACGAGCAGTTATCCCT				8q32	PREDICTED: Rattus norvegicus similar to zinc finger protein 651 (LOC316087), mRNA.					
Rattus norvegicus	RefSeq	GI_27700059-S	ILMN_262407	NRL_PREDICTED	XM_001055469.1	XM_001055469.1		290221	109502404	XM_001055469.1	Nrl_predicted	XP_001055469.1	ILMN_1371579	0003440593	S	391	AGAGACAGGAGCCCCGAATGTGCAGTTGCCCGAGAGATTTTCAGACGCCG				15p13	PREDICTED: Rattus norvegicus neural retina leucine zipper gene (predicted) (Nrl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138618-S	ILMN_273646	MGAT2	NM_053604.2	NM_053604.2		94273	52138618	NM_053604.2	Mgat2	NP_446056.1	ILMN_1366554	0000430338	S	1695	CCCCACCTAGGAAAAATGGAGGGTGGGGAGATATTAGGGACCATGAACTC	6	+	91138956-91139005	6q24	Rattus norvegicus mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (Mgat2), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence IDA]; The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9312] [evidence IEA]; The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine also occurs; this modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification [goid 18279] [evidence ISS]; The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine also occurs; this modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification [goid 18279] [evidence IEA]	Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IPI]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R [goid 8455] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R [goid 8455] [evidence IDA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R [goid 8455] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	Gnt2; MGC93297	Gnt2; MGC93297
Rattus norvegicus	RefSeq	GI_62655437-S	ILMN_69519	LOC501190	XM_576618.1	XM_576618.1		501190	62655437	XM_576618.1	LOC501190	XP_576618.1	ILMN_1370980	0002100168	S	178	CAGTGAAAAATGGGGGACCCGAAAGTGGGGACTATGTCAACAAATGTGGC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC501190), mRNA.					
Rattus norvegicus	RefSeq	GI_62543548-S	ILMN_289240	UBL3	NM_001015030.1	NM_001015030.1		363869	62543548	NM_001015030.1	Ubl3	NP_001015030.1	ILMN_1367016	0003850253	S	2397	GCAGACTACGTTGTGTTCTGTATTTAATGAGGGTTCTTGGCCCTCGGCAG	12	+	7063519-7063568	12p11	Rattus norvegicus ubiquitin-like 3 (Ubl3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]		MGC109350	MGC109350
Rattus norvegicus	RefSeq	GI_62647440-S	ILMN_66955	LOC500189	XM_575541.1	XM_575541.1		500189	62647440	XM_575541.1	LOC500189	XP_575541.1	ILMN_1369030	0001450593	S	367	TGTCAGCAGCATTACAGCTATCCTCCCACAGTGCTACAGCCTCCTACACA				4q32	PREDICTED: Rattus norvegicus similar to Ig kappa chain (LOC500189), mRNA.					
Rattus norvegicus	RefSeq	GI_8394208-S	ILMN_290634	RPL29	NM_017150.1	NM_017150.1		29283	8394208	NM_017150.1	Rpl29	NP_058846.1	ILMN_1361656	0000730538	S	543	AGACAGACTGCTGTGACACACCCACCTACACACTATCTGCAGATGACCAG	8	+	111575406-111575455	8q32	Rattus norvegicus ribosomal protein L29 (Rpl29), mRNA.	Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH [goid 300] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22626] [evidence ISS]; A ribosome bound to mRNA that forms part of a polysome [goid 42788] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655299-S	ILMN_55663	LOC503259	XM_578794.1	XM_578794.1		503259	62655299	XM_578794.1	LOC503259	XP_578794.1	ILMN_1360547	0003140041	S	155	GAGTGTAGCAAGAAAACTAGAACTGGGCATGGAGCCTGCGGCTGTAGCTG					PREDICTED: Rattus norvegicus similar to tigger transposable element derived 1 (LOC503259), mRNA.					
Rattus norvegicus	RefSeq	GI_47577620-S	ILMN_297643	OLR655	NM_001000342.1	NM_001000342.1		295862	47577620	NM_001000342.1	Olr655	NP_001000342.1	ILMN_1366776	0001770008	S	747	TGTGCCCTGCATATTTGTGTATATGCGACCTGCAGCTACATTACCGATTG	3	+	72816668-72816717	3q24	Rattus norvegicus olfactory receptor 655 (Olr655), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr655	Olr655
Rattus norvegicus	RefSeq	GI_62650383-S	ILMN_267081	RBKS_PREDICTED	XM_001062109.1	XM_001062109.1		362706	109478962	XM_001062109.1	Rbks_predicted	XP_001062109.1	ILMN_1374781	0001990609	S	928	GCTGCGGTCAGCGTCCAGGCCACAGGAACACAGTCCTCTTATCCATACAA				6q13	PREDICTED: Rattus norvegicus ribokinase (predicted) (Rbks_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15721934-S	ILMN_284585	SCRG1	NM_033499.1	NM_033499.1		64458	15721934	NM_033499.1	Scrg1	NP_277034.1	ILMN_1370102	0004570161	S	174	TCCGGAGGGCAGAGCCGACCTGAAGCTGATCGATGAAAATGTGCAGCATC	16	-	36185501-36185550	16p11	Rattus norvegicus scrapie responsive gene 1 (Scrg1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62667557-S	ILMN_270301	RGD1562476_PREDICTED	XM_001056585.1	XM_001056585.1		293863	109462327	XM_001056585.1	RGD1562476_predicted	XP_001056585.1	ILMN_1355370	0002370048	S	965	CCACACCAAGGACTGGTAGAGAAGGAGCTTAAAGTGAGCGGCAGCGTGCT				Xq37	PREDICTED: Rattus norvegicus similar to Eso3 protein (predicted) (RGD1562476_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664440-S	ILMN_51290	LOC291448	XM_214536.3	XM_214536.3		291448	62664440	XM_214536.3	LOC291448	XP_214536.2	ILMN_1360925	0004210152	S	241	GAAGTGCTCCAGCCTTATAAAAACAGGGAGGTGGACATCACACTTCCCGA					PREDICTED: Rattus norvegicus similar to CG9147-PB (predicted) (LOC291448), mRNA.					
Rattus norvegicus	RefSeq	GI_50054215-S	ILMN_264373	CDKN1B	NM_031762.2	NM_031762.2		83571	50054215	NM_031762.2	Cdkn1b	NP_113950.2	ILMN_1362533	0002190167	S	1656	GCGGTAATCACCCCCAGATAACACTGGGCAAAACTCTGGGGTACATGATA	4	+	171846062-171846111	4q43	Rattus norvegicus cyclin-dependent kinase inhibitor 1B (Cdkn1b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule [goid 42326] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IEP]; Destruction of a cell by its own lysosomal contents. This type of programmed cell death is seen when entire tissues, or parts thereof, are committed to destruction, and occurs by the formation of multiple acidic autophagic vacuoles within the doomed cells [goid 48102] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence ISS]; The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure [goid 48839] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence IEA]	Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence ISS]; Stops, prevents or reduces the activity of a cyclin-dependent protein kinase [goid 4861] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]	P27KIP1; p27; Kip1; CDKN4; Cdki1b	P27KIP1; p27; Kip1; CDKN4; Cdki1b
Rattus norvegicus	RefSeq	GI_62642231-S	ILMN_54696	PDE6C_PREDICTED	XM_342046.3	XM_342046.3		361752	109460054	XM_342046.3	Pde6c_predicted	XP_342047.3	ILMN_1354492	0005910601	S	2552	GGAGTATGAGGCGAAGGTGAAGGTGACTGAAGAGGAGGTGGGAAAGCAGG	1	+	242512201-242512250	1q53	PREDICTED: Rattus norvegicus phosphodiesterase 6C, cGMP specific, cone, alpha prime (predicted) (Pde6c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648356-S	ILMN_64807	RGD1562419_PREDICTED	XM_578374.2	XM_578374.2		502873	109472475	XM_578374.2	RGD1562419_predicted	XP_578374.2	ILMN_1365247	0001690286	S	3023	GCTGCAAGTCCAGCGAGTCTCACAGCGCCTCCAGTGACACTATAGAGCTC	4	-	149385952-149386001	4q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230206N24 (predicted) (RGD1562419_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079060-S	ILMN_299029	POLL	NM_001014168.1	NM_001014168.1		361767	62079060	NM_001014168.1	Poll	NP_001014190.1	ILMN_1364120	0000520129	S	2148	TCTTCGGGCCTTCACGGTAGAGAAAGCTATGTGGATTCCCTCACCCGCCC	1	-	250718513-250718562	1q54	Rattus norvegicus polymerase (DNA directed), lambda (Poll), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence IEA]; In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts) [goid 6289] [evidence ISS]	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651200-S	ILMN_268476	RGD1563476_PREDICTED	XM_001068131.1	XM_001068131.1		500714	109479914	XM_001068131.1	RGD1563476_predicted	XP_001068131.1	ILMN_1368004	0007100288	S	708	GAAGCCACTTCGCAAGCCCAGGCATCAGGAGGGTGAGATCTTTGACACAG				6q32	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L6 (Neoplasm-related protein C140) (predicted) (RGD1563476_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34867698-S	ILMN_268476	RGD1563476_PREDICTED	XM_001068131.1	XM_001068131.1		500714	109479914	XM_001068131.1	RGD1563476_predicted	XP_001068131.1	ILMN_1367242	0003170435	S	107	GGGCCCCGCCCGCTGGTGCGGTCAAAAAGAGTAGTTCTAAGGCTAAAAAG				6q32	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L6 (Neoplasm-related protein C140) (predicted) (RGD1563476_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648176-S	ILMN_56114	LOC362439	XM_347053.2	XM_347053.2		362439	62648176	XM_347053.2	LOC362439	XP_347054.1	ILMN_1373352	0004920280	S	188	GCAGCCCCAAGACAGAGTGCTCCCTTAGAATGCCGTGGAAAGTGTGGAGC					PREDICTED: Rattus norvegicus hypothetical LOC362439 (LOC362439), mRNA.					
Rattus norvegicus	RefSeq	GI_62643963-S	ILMN_263432	RGD1563745_PREDICTED	XM_001055931.1	XM_001055931.1		502544	109467107	XM_001055931.1	RGD1563745_predicted	XP_001055931.1	ILMN_1360600	0004760064	S	692	GCTGGGTCCAGCGGCCTCAAGGATGGAACACAGGATCTTCTAGCTGCTGT					PREDICTED: Rattus norvegicus similar to late envelope protein 7 (LEP7) (predicted) (RGD1563745_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641626-A	ILMN_263095	MUC6	XM_001063115.1	XM_001063115.1		282586	109463199	XM_001063115.1	Muc6	XP_001063115.1	ILMN_1376737	0004070112	S	9961	CCTACCAGGGCTGTGTGGCAAATGTGACTCTAACTCGTTGCCAGGGTTTC				1q41	PREDICTED: Rattus norvegicus mucin 6, gastric (Muc6), mRNA.					
Rattus norvegicus	RefSeq	GI_62663017-S	ILMN_65534	LOC502102	XM_577542.1	XM_577542.1		502102	62663017	XM_577542.1	LOC502102	XP_577542.1	ILMN_1365932	0000540717	S	614	TAGAGGAGGCATAGAGGACCTTCTGTACGTGATGCCGTGCTGTAGAGGAG					PREDICTED: Rattus norvegicus LOC502102 (LOC502102), mRNA.					
Rattus norvegicus	RefSeq	GI_18959257-S	ILMN_292963	PRDM4	NM_133312.1	NM_133312.1		170820	18959257	NM_133312.1	Prdm4	NP_579846.1	ILMN_1367684	0001500075	S	2192	GCACAAAGGCTTACCTAACCAAGTACCACCTCACCCGCCACCTGAAGGCC	7	+	20117266-20117315	7q13	Rattus norvegicus PR domain containing 4 (Prdm4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IPI]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	SC-1	SC-1
Rattus norvegicus	RefSeq	GI_62655969-S	ILMN_266490	RGD1565126_PREDICTED	XM_001067759.1	XM_001067759.1		303056	109490527	XM_001067759.1	RGD1565126_predicted	XP_001067759.1	ILMN_1353204	0007000066	S	4099	ACTGTCCACACTCAGCCCCCGTGTTGTCCAGTACCACCTGAAGCCCAGCA				10q21	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565126_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605645-S	ILMN_262462	RGD1310861	NM_001008290.1	NM_001008290.1		288667	56605645	NM_001008290.1	RGD1310861	NP_001008291.1	ILMN_1370319	0003710687	S	1072	GGGGACAGTGAAGAGTTGGAACCATGTATGGGATAGTGCTAGTAGCTGCT	12	+	35401939-35401988	12q16	Rattus norvegicus similar to RIKEN cDNA 1500011H22 (RGD1310861), mRNA.				MGC105520	MGC105520
Rattus norvegicus	RefSeq	GI_7549745-S	ILMN_267398	B2M	NM_012512.1	NM_012512.1		24223	7549745	NM_012512.1	B2m	NP_036644.1	ILMN_1368656	0002120041	S	315	AACACGTCACTCTGAAGGAGCCCAAAACCGTCACCTGGGACCGAGACATG	3	+	108931003-108931041:108931555-108931565	3q35	Rattus norvegicus beta-2 microglobulin (B2m), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an early endosome [goid 31901] [evidence ISS]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family [goid 2481] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666028-S	ILMN_54669	RGD1561401_PREDICTED	XM_574763.2	XM_574763.2		499440	109509503	XM_574763.2	RGD1561401_predicted	XP_574763.1	ILMN_1357561	0006020446	S	329	GCAAAAGGCCTCGCACTCGACTCAACTTGCAACAGCGCAGGATCCTAGTG	20	-	36898466-36898515	20q11	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1561401_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641740-S	ILMN_276959	RGD1565319_PREDICTED	XM_001070153.1	XM_001070153.1		309161	109463373	XM_001070153.1	RGD1565319_predicted	XP_001070153.1	ILMN_1355133	0002350193	S	1490	TCTTGCTGGCAGAGCAGCAGGGGAATGGAGACTGAAGTGGAGGGACTTGC				1q43	PREDICTED: Rattus norvegicus similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A) (predicted) (RGD1565319_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978850-S	ILMN_276959	RGD1565319_PREDICTED	XM_001070153.1	XM_001070153.1		309161	109463373	XM_001070153.1	RGD1565319_predicted	XP_001070153.1	ILMN_1365610	0006370088	S	2399	CACTAACTCACACAGCACCAACAGCCAGCAGCACCAGGACACCCTGTAGG				1q43	PREDICTED: Rattus norvegicus similar to Delta-interacting protein A (Hepatitis delta antigen interacting protein A) (predicted) (RGD1565319_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718554-S	ILMN_68036	LOC503364	XM_578903.1	XM_578903.1		503364	62718554	XM_578903.1	LOC503364	XP_578903.1	ILMN_1361862	0001940139	S	2	GGGTCCCAAAGGGGGCAAGGACCTCAAAGACATTCTAAAGCAGCATCTGA					PREDICTED: Rattus norvegicus similar to ornithine decarboxylase (LOC503364), mRNA.					
Rattus norvegicus	RefSeq	GI_47777699-A	ILMN_262839	OLR1845	NM_001000696.1	NM_001000696.1		404902	47576774	NM_001000696.1	Olr1845	NP_001000696.1	ILMN_1376537	0006660097	S	653	TTGTCAAGACCATTCTAAGATTCCCCTCTGCTGAGCAAAGGAAAAAGGCC	7	+	3689949-3689998	7q11	Rattus norvegicus olfactory receptor 1845 (Olr1845), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1845	Olr1845
Rattus norvegicus	RefSeq	GI_62642792-S	ILMN_61415	COL4A3BP_PREDICTED	XM_345143.3	XM_345143.3		365652	109464274	XM_345143.3	Col4a3bp_predicted	XP_345144.3	ILMN_1354291	0004560433	S	2815	GCTGCTGGTTTCTACATGGACTCATGTCGTGTGTCTCTTCATAACTGAGG	2	+	27114534-27114583	2q12	PREDICTED: Rattus norvegicus procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein (predicted) (Col4a3bp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576662	ILMN_302250	OLR1693	NM_001000557.1	NM_001000557.1		365523	47576662	NM_001000557.1	Olr1693	NP_001000557.1	ILMN_1650857	0003140603	S	411	CTGCAAGTGTGCTGTGATAGCTGTATGGATGGCTGGAGGACTAGCTGGGC	20	-	647286-647335	20p12	Rattus norvegicus olfactory receptor 1693 (Olr1693), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1693	Olr1693
Rattus norvegicus	RefSeq	GI_62665080-S	ILMN_282561	RGD1306947	XM_001065349.1	XM_001065349.1		288924	109508543	XM_001065349.1	RGD1306947	XP_001065349.1	ILMN_1349982	0006900471	S	899	GCTGCTCTGAGGACGGCAAAGTGTTCTTCTGGGACCTGGTAGAGGGTTCC				19q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500041N16 (RGD1306947), mRNA.					
Rattus norvegicus	RefSeq	GI_62718255-S	ILMN_278229	LOC689664	XM_001071579.1	XM_001071579.1		689664	109513376	XM_001071579.1	LOC689664	XP_001071579.1	ILMN_1373282	0005670064	S	481	GACCATCAACGGCCTGAACCACCATTATCAGGTCTCAGAAAGTGCAAGAG	Un|NW_047879.1	-	112116-112135:112854-112883		PREDICTED: Rattus norvegicus hypothetical protein LOC689664 (LOC689664), mRNA.					
Rattus norvegicus	RefSeq	GI_27672184-S	ILMN_54203	ULK2_PREDICTED	XM_220541.4	XM_220541.4		303206	109488255	XM_220541.4	Ulk2_predicted	XP_220541.4	ILMN_2039412	0004850376	S	3196	CTGCTGGCGGCTTCCCTGCATCTCGCCAAAGCTCAGATCAAGTCCGGGAA	10	-	47937946-47937995	10q23	PREDICTED: Rattus norvegicus Unc-51 like kinase 2 (C. elegans) (predicted) (Ulk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645974-S	ILMN_284406	SLC24A3	XM_001054941.1	XM_001054941.1		85267	109470941	XM_001054941.1	Slc24a3	XP_001054941.1	ILMN_1367968	0006860132	S	1818	CAAGAAGCTGGGCTGTGGATGCCTCTTCCTGTATGGCGTGTTCCTCTGCT				3q41	PREDICTED: Rattus norvegicus solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 (Slc24a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IDA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence NAS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEP]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + K+(in) + Na+(out) = Ca2+(out) + K+(out) + Na+(in) [goid 8273] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + K+(in) + Na+(out) = Ca2+(out) + K+(out) + Na+(in) [goid 8273] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928897-S	ILMN_277741	KLRG1	NM_031649.1	NM_031649.1		58975	13928897	NM_031649.1	Klrg1	NP_113837.1	ILMN_1351288	0003120315	S	505	CCAGGAGTATGTGGGCGAGGACTTTTACTGGATTGGCTTGAGGGACATCG	4	-	158675310-158675359	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily G, member 1 (Klrg1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	MAFA	MAFA
Rattus norvegicus	RefSeq	GI_62663591-S	ILMN_58250	RGD1561897_PREDICTED	XM_574033.2	XM_574033.2		498754	109504945	XM_574033.2	RGD1561897_predicted	XP_574033.1	ILMN_1355767	0000360739	S	2559	CTGCAGTTGGAGGGTTTTTGACTGGAAGGGAGGAAAGAAAGGCTGACGGG	17	-	49378049-49378098	17q11	PREDICTED: Rattus norvegicus similar to Serine/threonine-protein kinase Kist (Kinase interacting with stathmin) (predicted) (RGD1561897_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666497-S	ILMN_294137	RGD1559566_PREDICTED	XM_001056263.1	XM_001056263.1		314434	109511463	XM_001056263.1	RGD1559566_predicted	XP_001056263.1	ILMN_1356992	0005390528	S	97	GTGCACAGTCATTGTGAGGGACCCCAGAGGAACTCTGCGGAGGGACTTCA				Xq12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (predicted) (RGD1559566_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254797-S	ILMN_264021	P2RX1	NM_012997.2	NM_012997.2		25505	40254797	NM_012997.2	P2rx1	NP_037129.1	ILMN_1372182	0001850152	S	2205	GCACTGCAAGCACAGCCATCTGAACACACCCACACTGCAAGGCAGGGACA	10	+	59904719-59904768	10q24	Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 1 (P2rx1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The side of the outer membrane that is opposite to the side that faces the periplasm of the cell [goid 31240] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IPI]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The regulated release of serotonin by a platelet or group of platelets [goid 2554] [evidence ISS]; Any process that increases the frequency, rate or extent of vascular smooth muscle contraction [goid 3056] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence ISS]; The introduction of semen or sperm into the genital tract of a female [goid 7320] [evidence IEA]; The introduction of semen or sperm into the genital tract of a female [goid 7320] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism [goid 16265] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IMP]; A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure [goid 42310] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 43270] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid [goid 46513] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence IEA]; Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence ISS]; Combining with a purine nucleotide to initiate a change in cell activity [goid 1614] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IMP]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular ATP has been bound by the channel complex or one of its constituent parts [goid 4931] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	P2XMR	P2XMR
Rattus norvegicus	RefSeq	GI_62654334-S	ILMN_51937	COL7A1_PREDICTED	XM_238554.4	XM_238554.4		301012	109483965	XM_238554.4	Col7a1_predicted	XP_238554.4	ILMN_2038930	0000670521	S	8810	TCAGAACACAGGTGCTGCCTAGGGCTGAGGCCCAGATGATGCACTTGGTG	8	+	114002674-114002684:114003091-114003101:114003102-114003129	8q32	PREDICTED: Rattus norvegicus procollagen, type VII, alpha 1 (predicted) (Col7a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654236-S	ILMN_69700	RGD1560166_PREDICTED	XM_576464.2	XM_576464.2		501049	109483925	XM_576464.2	RGD1560166_predicted	XP_576464.1	ILMN_1354121	0000460053	S	1356	CAGGTACTCTGCACGCACTAATGGCTCTGAAGTGGCAGAGGGGGTGGTAC	8	-	111608360-111608409	8q32	PREDICTED: Rattus norvegicus similar to Probable G-protein coupled receptor 62 (hGPCR8) (predicted) (RGD1560166_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929029-S	ILMN_293721	SULT1C1	NM_031732.1	NM_031732.1		65185	13929029	NM_031732.1	Sult1c1	NP_113920.1	ILMN_1366486	0000110110	S	925	CGCACAGAGATCTGAGAGCAGTGAGGAAGAGAGAAGCCCTAGATTTCCTG	9	+	531743-531757:531758-531792	9q11	Rattus norvegicus sulfotransferase family, cytosolic, 1C, member 1 (Sult1c1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence NAS]	The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione [goid 6790] [evidence ISS]	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence IDA]; Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate [goid 4062] [evidence ISS]; Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Stp2; St1c1; HAST-I; Sult1a2; MGC108652	Stp2; St1c1; HAST-I; Sult1a2; MGC108652
Rattus norvegicus	RefSeq	GI_62649518-A	ILMN_274108	GUCA2B	NM_022284.1	NM_022284.1		64055	11596860	NM_022284.1	Guca2b	NP_071620.1	ILMN_1376367	0004200500	S	471	GTACGGGCTGCTGATGAAATGACTCCAGACACCTACCCCCACAGCCTACC	5	-	140237214-140237263	5q36	Rattus norvegicus guanylate cyclase activator 2b (Guca2b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds [goid 7588] [evidence ISS]; The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds [goid 7588] [evidence IEA]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence ISS]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of water within an organism or cell [goid 30104] [evidence NAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cyclic nucleotides [goid 30802] [evidence IDA]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of ions within an organism or cell [goid 50801] [evidence TAS]	Increases the activity of an enzyme [goid 8047] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653049-S	ILMN_54452	MCRS1	XM_217048.4	XM_217048.4		300222	109481269	XM_217048.4	Mcrs1	XP_217048.2	ILMN_1374912	0006350408	S	1574	AGGCTGCCAAGATCACACCACAGTGAGGCGGGTAGCAGAAACCAGGGCAT	7	-	138002840-138002864:138002865-138002889	7q36	PREDICTED: Rattus norvegicus microspherule protein 1 (Mcrs1), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27545355-S	ILMN_268079	CRYGE	XM_001081859.1	XM_001081859.1		24279	109519643	XM_001081859.1	Cryge	XP_001081859.1	ILMN_1351416	0000070594	S	95	TCTATGAGATGCCCAACTACCGGGGGCGGCAGTACCTGCTGAGGCCTGGA				9q32	PREDICTED: Rattus norvegicus crystallin, gamma E (Cryge), mRNA.		The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078490-S	ILMN_299201	FAM149B1	NM_001013878.1	NM_001013878.1		289900	62078490	NM_001013878.1	Fam149b1	NP_001013900.1	ILMN_1354804	0000670288	S	1787	TCTGCCAAAGACTGCACGGGAAGCTGTTCTGTGTCCAGTTCCTGCCTTCT	15	-	4158109-4158158	15p16	Rattus norvegicus family with sequence similarity 149, member B1 (Fam149b1), mRNA.					
Rattus norvegicus	RefSeq	GI_11693139-S	ILMN_290302	STAT5B	NM_022380.1	NM_022380.1		25126	11693139	NM_022380.1	Stat5b	NP_071775.1	ILMN_1371836	0004060594	S	2451	ATCCCTCACGCGCAGTCATGACCAGACCTCACCGCCTGCAGCTTCACTGT	10	-	89716696-89716745	10q32.1	Rattus norvegicus signal transducer and activator of transcription 5B (Stat5b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence IEA]; The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence IDA]; The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation [goid 1553] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IDA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IDA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence IEA]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 19218] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids [goid 19218] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence IEA]; Any process that modulates the frequency, rate or extent of epithelial cell differentiation [goid 30856] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IDA]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IEA]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation [goid 45588] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of lymphocyte differentiation [goid 45621] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte differentiation [goid 45647] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence IEA]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion [goid 46543] [evidence IEA]; The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion [goid 46543] [evidence ISS]; The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion [goid 46544] [evidence IEA]; The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion [goid 46544] [evidence ISS]; The process whose specific outcome is the progression of Peyer's patches over time, from their formation to the mature structure. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes [goid 48541] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [evidence IMP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653331-S	ILMN_264135	DOCK6_PREDICTED	XM_001073752.1	XM_001073752.1		367039	109484268	XM_001073752.1	Dock6_predicted	XP_001073752.1	ILMN_1374944	0004610332	S	6128	AGACCAGAAGGAGTACCACCGGGAACTGGAACGCCACTACAGCCGCCTCC				8q13	PREDICTED: Rattus norvegicus dedicator of cytokinesis 6 (predicted) (Dock6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661625-S	ILMN_52562	RGD1566025_PREDICTED	XM_224282.4	XM_224282.4		305963	109501807	XM_224282.4	RGD1566025_predicted	XP_224282.3	ILMN_1368485	0002850458	S	980	CACCCAGGATGATGTCCCAAAGCCCAGGAAGAGGAGAGCAAAGAAGACGC	15	+	43184245-43184294	15p12	PREDICTED: Rattus norvegicus similar to Pin2-interacting protein X1 (predicted) (RGD1566025_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928789-S	ILMN_263300	CSPG6	NM_031583.1	NM_031583.1		29486	13928789	NM_031583.1	Cspg6	NP_113771.1	ILMN_1349197	0007100040	S	3752	CCTGCCGTCTTGGAAGATGTGTATAGTAATGTGGTCCGTACCTGGGAACG	1	+	259865260-259865309	1q55	Rattus norvegicus chondroitin sulfate proteoglycan 6 (Cspg6), mRNA.				bamacan	bamacan
Rattus norvegicus	RefSeq	GI_62651568-S	ILMN_70382	LOC500751	XM_576129.1	XM_576129.1		500751	62651568	XM_576129.1	LOC500751	XP_576129.1	ILMN_1374146	0001770204	S	113	GCCAAGGATGTGGAGCAAGGGGGAACACTTCTTCACTGCTGGTGGGAGTG					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC500751), mRNA.					
Rattus norvegicus	RefSeq	GI_47577912-S	ILMN_262522	OLR1148	NM_001000875.1	NM_001000875.1		405173	47577912	NM_001000875.1	Olr1148	NP_001000875.1	ILMN_2039059	0002750349	S	688	TCAGCTGGTGGAAGGCATAAGGCATTTTCCACCTGTGGGTCTCATCTTTC	8	+	17712794-17712843	8q13	Rattus norvegicus olfactory receptor 1148 (Olr1148), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1148	Olr1148
Rattus norvegicus	RefSeq	GI_62666772-S	ILMN_48503	LOC367773	XM_578977.1	XM_578977.1		367773	62666772	XM_578977.1	LOC367773	XP_578977.1	ILMN_1365203	0001740563	S	507	CACAGGACTCGGAGACGAGCTCGAGACACTGAGGAGGGGAGTTTTGCTGA					PREDICTED: Rattus norvegicus similar to MGC68529 protein (LOC367773), mRNA.					
Rattus norvegicus	RefSeq	GI_62638618-S	ILMN_58561	LOC365118	XM_344822.2	XM_344822.2		365118	62638618	XM_344822.2	LOC365118	XP_344823.2	ILMN_1372391	0005860278	S	519	GTCAGGACACATGGAACTACAGTGGAGGTTGAAGAGGCAGAGAACAACCA					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365118), mRNA.					
Rattus norvegicus	RefSeq	GI_47058993-S	ILMN_297042	ATP5L	NM_212516.1	NM_212516.1		300677	47058993	NM_212516.1	Atp5l	NP_997681.1	ILMN_1360933	0005550121	S	414	GCTAGCTGTGCAGTGGCAGTGTTTCCTCTGTCAAGTACTGCACAGTGACA	8	-	47870007-47870056	8q22	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G (Atp5l), nuclear gene encoding mitochondrial protein, mRNA.	All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins [goid 276] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence ISS]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]	Atp5l	Atp5l
Rattus norvegicus	RefSeq	GI_34869543-S	ILMN_277888	RGD1563478_PREDICTED	XR_008667.1	XR_008667.1		364278	109502204	XR_008667.1	RGD1563478_predicted		ILMN_1362945	0001230138	S	138	AGAGCGCTGGCGTCCTCTGAGCAGAGTAGCCGCAGCAGAGATGATAGCGT				15p16	PREDICTED: Rattus norvegicus similar to RNA polymerase II transcriptional coactivator (predicted) (RGD1563478_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646046-S	ILMN_293109	RGD1564048_PREDICTED	XM_001060786.1	XM_001060786.1		499917	109471037	XM_001060786.1	RGD1564048_predicted	XP_001060786.1	ILMN_1369498	0001580452	S	820	AAGACCTACGGCTCCATCAACCTGCGTATGAGGCAACTCACTGGGGACGG				3q41	PREDICTED: Rattus norvegicus similar to Protein C20orf46 (predicted) (RGD1564048_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11862979-S	ILMN_302012	PRKAA1	NM_019142.1	NM_019142.1		65248	11862979	NM_019142.1	Prkaa1	NP_062015.1	ILMN_1357292	0006200484	S	1412	CAGAAGCCAAATCAGGGACTGCTACTCCACAGAGATCGGGATCCATCAGC	2	+	54360227-54360276	2q16	Rattus norvegicus protein kinase, AMP-activated, alpha 1 catalytic subunit (Prkaa1), mRNA.	A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IDA]; A protein complex that possesses AMP-dependent protein kinase activity [goid 31588] [evidence IMP]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence NAS]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence NAS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of gluconeogenesis [goid 45722] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of fatty acid oxidation [goid 46321] [evidence NAS]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence NAS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IMP]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IMP]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of AMP [goid 4679] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Increases the activity of the enzyme eukaryotic elongation factor-2 kinase [goid 42557] [evidence NAS]	5-AMP-activatedproteinkinasealpha-1catalyticsubunit; 5'-AMP-activatedproteinkinasealpha-1catalyticsubunit	5-AMP-activatedproteinkinasealpha-1catalyticsubunit; 5'-AMP-activatedproteinkinasealpha-1catalyticsubunit
Rattus norvegicus	RefSeq	GI_62660321-S	ILMN_280306	RGD1308324_PREDICTED	XM_001074883.1	XM_001074883.1		305268	109500509	XM_001074883.1	RGD1308324_predicted	XP_001074883.1	ILMN_1360610	0002510408	S	4357	GGGCTTACAGCCTCTAGAAGTAACTCGCCTGGAGCTCCTACTCTTGTTAG				14p21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730469D23 (predicted) (RGD1308324_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646458-S	ILMN_284735	ZBP1	XM_001054526.1	XM_001054526.1		171091	109471424	XM_001054526.1	Zbp1	XP_001054526.1	ILMN_1358414	0000780168	S	1461	CCTTGCTGTCCCGCAGTAAAAGATGGGCGAATGTGGAGTAGCACACAGCC				3q42	PREDICTED: Rattus norvegicus Z-DNA binding protein 1 (Zbp1), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA in the Z form, i.e. a left-handed helix in which the phosphate backbone zigzags [goid 3692] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule [goid 3726] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648632-S	ILMN_56023	RGD1305828_PREDICTED	XM_216331.4	XM_216331.4		297824	109474656	XM_216331.4	RGD1305828_predicted	XP_216331.4	ILMN_1374502	0006370102	S	2125	GCTGTGTTCGCAGGAAGCCCACAGTTGATGGGTGTGATCAAGCTATGCAC	5	-	25109764-25109813	5q13	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1305828_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638720	ILMN_63353	LOC502259	XM_577720.1	XM_577720.1		502259	62638720	XM_577720.1	LOC502259	XP_577720.1	ILMN_1650284	0000630020	S	1050	GGGTGCGATGAAATGCATGGGATTTCAAGCCTCTGTGCTTTTAGATTACA					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502259), mRNA.					
Rattus norvegicus	RefSeq	GI_21326472-S	ILMN_282805	SLC34A3	NM_139338.1	NM_139338.1		246234	21326472	NM_139338.1	Slc34a3	NP_647554.1	ILMN_1373573	0004150133	S	1971	CCTGGGGCTGAGTGGCAGGGCTCCACATGGATGTTTTAGTCTCTGCATCC	3	-	3393526-3393575	3p13	Rattus norvegicus solute carrier family 34 (sodium phosphate), member 3 (Slc34a3), mRNA.	Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IMP]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence ISS]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence IEA]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence ISS]; The regulation of the levels, transport, and metabolism of phosphate ions within a cell or between a cell and its external environment [goid 30643] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in) [goid 5436] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in) [goid 5436] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in) [goid 5436] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA];  [goid 15321] [evidence ISS];  [goid 15321] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659061-S	ILMN_64030	LOC498194	XM_573413.1	XM_573413.1		498194	62659061	XM_573413.1	LOC498194	XP_573413.1	ILMN_1368518	0006620537	S	5469	TGAGATCCAGACACAGCAAGGGTCAGGCAGCGGAGAACGGGACTTGTGCT				12q16	PREDICTED: Rattus norvegicus similar to meningioma  1 (LOC498194), mRNA.					
Rattus norvegicus	RefSeq	GI_62659627	ILMN_60011	TIPRL_PREDICTED	XM_341145.3	XM_341145.3		360869	109498125	XM_341145.3	Tiprl_predicted	XP_341146.3	ILMN_1650013	0002810450	S	891	TCCAGAAAGAATTGATCCTAACCCCGTGGACTCAGAAAGTGCGCCCTCAG	13	-	80970658-80970707	13q23	PREDICTED: Rattus norvegicus TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (predicted) (Tiprl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758231-S	ILMN_288460	PLCB2	NM_053478.1	NM_053478.1		85240	16758231	NM_053478.1	Plcb2	NP_445930.1	ILMN_1369041	0004280132	S	3756	TGCCGCAGCCCCGCTTCTCAGCCACATAAGGCAGAAATGGGAGACCATTG	3	-	105203722-105203771	3q35	Rattus norvegicus phospholipase C, beta 2 (Plcb2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]	The series of events required for a bitter taste stimulus to be received and converted to a molecular signal [goid 1580] [evidence IMP]; The series of events required for a bitter taste stimulus to be received and converted to a molecular signal [goid 1580] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence NAS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The series of events required to receive a bitter taste stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 50913] [evidence ISS]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence NAS]; Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate [goid 4629] [evidence IMP]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656651-S	ILMN_288139	CCL12_PREDICTED	XM_213425.2	XM_213425.2		287562	62656651	XM_213425.2	Ccl12_predicted	XP_213425.1	ILMN_1368224	0006520411	S	177	TTCGGAGGCTAAAGAGCTACAGGAAAATCACAAGCAGCCAGTGTCCCCGG	10	+	70321845-70321894	10q26	PREDICTED: Rattus norvegicus chemokine (C-C motif) ligand 12 (predicted) (Ccl12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660976-S	ILMN_269760	LOC501937	XM_577363.1	XM_577363.1		501937	62660976	XM_577363.1	LOC501937	XP_577363.1	ILMN_1370731	0003870450	S	1315	CTGGAGCTCATGGATACACTTGGGACAATAAGGCAGCTCAAGAGCATTTC	14|NW_047435.1	-	79885-79934		PREDICTED: Rattus norvegicus similar to PRAME family member 8 (LOC501937), mRNA.					
Rattus norvegicus	RefSeq	GI_25282462-S	ILMN_283460	CDC20	NM_171993.1	NM_171993.1		64515	25282462	NM_171993.1	Cdc20	NP_741990.1	ILMN_1373595	0002690471	S	1616	TGGACCCTGCCCTTCGGCGGGAGCGGGAAAAAGCCAGCACATCTAAAAGT				5q36	Rattus norvegicus cell division cycle 20 homolog (S. cerevisiae) (Cdc20), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	p55cdc; MGC93111	p55cdc; MGC93111
Rattus norvegicus	RefSeq	GI_12083680-S	ILMN_291405	PDE1B	NM_022710.1	NM_022710.1		29691	12083680	NM_022710.1	Pde1b	NP_073201.1	ILMN_1368784	0003290546	S	1758	CCCCCATCTGCTCCAAGGGAGTGTGTTGGTTGTGATAGAGACAGCCCACC	7	+	142427553-142427602	7q36	Rattus norvegicus phosphodiesterase 1B, calmodulin-dependent (Pde1b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]	Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence IDA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Aop2; Pde1b1	Aop2; Pde1b1
Rattus norvegicus	RefSeq	GI_18959273-S	ILMN_270788	ZFP111	NM_133323.1	NM_133323.1		170849	18959273	NM_133323.1	Zfp111	NP_579857.1	ILMN_1364784	0000540452	S	2501	AGGGCTTAGTGCTCACCGGAGGGTCCACACAGGAGAAAAAACCCTGCACG	1	-	79417222-79417271	1q21	Rattus norvegicus zinc finger protein 111 (Zfp111), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence NAS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence NAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	rKr2	rKr2
Rattus norvegicus	RefSeq	GI_27465586-S	ILMN_287632	OLR1278	NM_173129.1	NM_173129.1		286913	27465586	NM_173129.1	Olr1278	NP_775152.1	ILMN_1371824	0001580603	S	662	TTGGTGTGGTTTGCGCATCAGCTCACACAGGCTTCATGATAAGAAGTCAG	8	-	41275650-41275699	8q22	Rattus norvegicus olfactory receptor 1278 (Olr1278), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576978-S	ILMN_270353	OLR264	NM_001000999.1	NM_001000999.1		405363	47576978	NM_001000999.1	Olr264	NP_001000999.1	ILMN_1352064	0006770673	S	198	TAGCCACTTGGCTTCTATTGACATGGGTATCTCATCATCTGTCACACCCA	1	+	165864468-165864517	1q33	Rattus norvegicus olfactory receptor 264 (Olr264), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr264	Olr264
Rattus norvegicus	RefSeq	GI_62646120-S	ILMN_69245	TRP53INP2	XM_342551.3	XM_342551.3		362246	109469036	XM_342551.3	Trp53inp2	XP_342552.3	ILMN_1348952	0003520102	S	795	CCCAAGCACCAGGGCAGCTTCATTTACCAGCCGTGCCAGCGCCAGTTCAA	3	+	145882911-145882960	3q42	PREDICTED: Rattus norvegicus tumor protein p53 inducible nuclear protein 2 (Trp53inp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62650314-S	ILMN_53393	LOC503011	XM_578524.1	XM_578524.1		503011	62650314	XM_578524.1	LOC503011	XP_578524.1	ILMN_1370667	0002850441	S	828	GTCTGGACAGGTTGCGCTCATCGGGAAACCGAGAAGACTGAGGAGTCACC					PREDICTED: Rattus norvegicus similar to uracil DNA glycosylase (LOC503011), mRNA.					
Rattus norvegicus	RefSeq	GI_62659148-S	ILMN_48887	TNFRSF11A_PREDICTED	XM_222503.3	XM_222503.3		304695	62659148	XM_222503.3	Tnfrsf11a_predicted	XP_222503.3	ILMN_1367097	0000430102	S	5359	AACTTTCAGGGGTAGGAGACCGGGAGAGATGGGGGGAGTGTGACGGGGTA				13p13	PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 11a (predicted) (Tnfrsf11a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646950-S	ILMN_66218	LOC296952	XM_231561.3	XM_231561.3		296952	62646950	XM_231561.3	LOC296952	XP_231561.3	ILMN_1369549	0000540377	S	4833	ATACTTGCCACCGAGGCTGAGGAGCGCCAGTCAAGGCTTCCCAGTGCTCA				4q22	PREDICTED: Rattus norvegicus similar to kielin-like (LOC296952), mRNA.					
Rattus norvegicus	RefSeq	GI_62666544-S	ILMN_299955	BCOR_PREDICTED	XR_009547.1	XR_009547.1		317346	109511524	XR_009547.1	Bcor_predicted		ILMN_1352831	0005270722	S	6568	CGACTATGTGCTTGCTTTGGGGGAGTGAATTGGGTGAAGGCACTTGGTGG				Xq13	PREDICTED: Rattus norvegicus Bcl6 interacting corepressor (predicted) (Bcor_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656877-S	ILMN_51837	LOC501716	XM_577121.1	XM_577121.1		501716	62656877	XM_577121.1	LOC501716	XP_577121.1	ILMN_1363935	0001690487	S	350	CCCCGCCTTTCCTGGCACTCTATGCAAACTGGGGCAAAATCTGGGACTGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L28 (LOC501716), mRNA.					
Rattus norvegicus	RefSeq	GI_62651759-S	ILMN_58124	DOS_PREDICTED	XM_234901.4	XM_234901.4		314622	109480206	XM_234901.4	Dos_predicted	XP_234901.4	ILMN_1373810	0003990097	S	2838	ACGTGCCCCCTTACGCCGTGGGGATAGTGTTGATTGTCCTCCTGAAGGCC	7	+	11086368-11086417	7q11	PREDICTED: Rattus norvegicus downstream of Stk11 (predicted) (Dos_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34853255-S	ILMN_278616	PSX1_PREDICTED	XM_001076864.1	XM_001076864.1		296535	109469496	XM_001076864.1	Psx1_predicted	XP_001076864.1	ILMN_1355742	0005290170	S	394	CCTGAGGGCAGCAGGAGTCAACAGACTGGGAACAGCCTGGCTCACCAGCT				3p13	PREDICTED: Rattus norvegicus placenta specific homeobox 1 (predicted) (Psx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656432-S	ILMN_66144	LOC501698	XM_577099.1	XM_577099.1		501698	62656432	XM_577099.1	LOC501698	XP_577099.1	ILMN_1350739	0002340435	S	752	TGGGAGGGACAACGTGGTGGCTGTGATCTATTCAATTGCCACCCCTGTTC				10q22	PREDICTED: Rattus norvegicus similar to olfactory receptor Olr1448 (LOC501698), mRNA.					
Rattus norvegicus	RefSeq	GI_47576660-S	ILMN_266151	OLR852	NM_001000399.1	NM_001000399.1		298039	47576660	NM_001000399.1	Olr852	NP_001000399.1	ILMN_1362613	0004480504	S	660	CATCTCTAGCATTCTCAACATTCGCTCTGCTGAGGGGAGGAGCAAGGCCT	5	-	70366967-70367016	5q24	Rattus norvegicus olfactory receptor 852 (Olr852), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr852	Olr852
Rattus norvegicus	RefSeq	GI_27465566-S	ILMN_277768	HSBP1	NM_173119.1	NM_173119.1		286899	27465566	NM_173119.1	Hsbp1	NP_775142.1	ILMN_1363612	0002650088	S	852	AGCTACTGACTGAAAGGGAAGAGACCAAAAGACCCGAGTGAGCCCGCCCC	19	+	49594307-49594356	19q12	Rattus norvegicus heat shock factor binding protein 1 (Hsbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IDA]	A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IDA]		Hsp25	Hsp25
Rattus norvegicus	RefSeq	GI_62718026-S	ILMN_264928	LOC301117	XM_001055676.1	XM_001055676.1		301117	109486537	XM_001055676.1	LOC301117	XP_001055676.1	ILMN_1371867	0004540609	S	874	CCTCTGCTGGGCTAGAAAACCCCTGGAGGAGATGTGGTTTGAGGTTGCCC					PREDICTED: Rattus norvegicus similar to Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor (Endopeptidase Clp) (LOC301117), mRNA.					
Rattus norvegicus	RefSeq	GI_56797760-A	ILMN_273834	IL6ST	NM_001008725.1	NM_001008725.1		25205	56797760	NM_001008725.1	Il6st	NP_001008725.1	ILMN_1376855	0004010600	S	2894	GATGGGCAGGCCAGCAGCCAATCAGAACCCACTGCATTCTCCAGTGTTAA	2	+	43842226-43842275	2q14	Rattus norvegicus interleukin 6 signal transducer (Il6st), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The release of triacylglycerols, any triester of glycerol, from storage within cells or tissues, making them available for metabolism [goid 6642] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that modulates the frequency, rate or extent of the Notch signaling pathway [goid 8593] [evidence ISS]; Any process that modulates the frequency, rate or extent of the Notch signaling pathway [goid 8593] [evidence IEA]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence IMP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence TAS]; Any process that modulates the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46883] [evidence TAS]; Any process that decreases the concentration of calcium ions in the cytodol [goid 51481] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]; Combining with interleukin-11 to initiate a change in cell activity [goid 4921] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with interleukin-11 [goid 19970] [evidence ISS]	Ac1055	Ac1055
Rattus norvegicus	RefSeq	GI_12018339-S	ILMN_273000	CHRNA10	NM_022639.1	NM_022639.1		64574	12018339	NM_022639.1	Chrna10	NP_072161.1	ILMN_1354311	0004670168	S	2045	CTCACCTGGCTTGTTTCTGCTTAGGCTCTCCCGGAAGGGAGTTCACGGTC	1	-	159590979-159591028	1q32	Rattus norvegicus cholinergic receptor, nicotinic, alpha 10 (Chrna10), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence TAS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine [goid 7271] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations [goid 50910] [evidence ISS]	 [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_12018333-S	ILMN_279271	VAX1	NM_022636.1	NM_022636.1		64571	12018333	NM_022636.1	Vax1	NP_072158.1	ILMN_1361895	0000520332	S	947	CGGCCTTCGAGCCTTACTCCCGGACCAACAATAAAGAAGGGGCCGAGAAA	1	-	265699418-265699467	1q55	Rattus norvegicus ventral anterior homeobox 1 (Vax1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the proliferation of neuroblasts [goid 7406] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA that is assembled into chromatin [goid 31490] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078818-S	ILMN_282258	TIFA	NM_001014044.1	NM_001014044.1		310877	62078818	NM_001014044.1	Tifa	NP_001014066.1	ILMN_1370061	0000580440	S	1209	GTGTCTTCGGCATGCTAGTGCTTGTAGAGCCAGAGTCCTGGGCTAAGCTC	2	+	225076467-225076516	2q42	Rattus norvegicus TRAF-interacting protein with forkhead-associated domain (Tifa), mRNA.		A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ab2-389	Ab2-389
Rattus norvegicus	RefSeq	GI_62718189-S	ILMN_268076	LOC688663	XM_001067795.1	XM_001067795.1		688663	109513261	XM_001067795.1	LOC688663	XP_001067795.1	ILMN_1358751	0000940075	S	325	TATCCTCATACCTCCAGCAGGCGGGTGATGAAGCTGTCCACTCTCAGCTC	Un|NW_047874.1	+	746471-746520		PREDICTED: Rattus norvegicus hypothetical protein LOC688663 (LOC688663), mRNA.					
Rattus norvegicus	RefSeq	GI_46485448-S	ILMN_287821	OXGR1	NM_207588.1	NM_207588.1		290493	46485448	NM_207588.1	Oxgr1	NP_997471.1	ILMN_1351386	0001050601	S	930	GCAGGCATTCTGCTCCGCAGTGAGATGTAAAGCCATCGGGGACCTTGAAC	15	-	105089749-105089798	15q24	Rattus norvegicus oxoglutarate (alpha-ketoglutarate) receptor 1 (Oxgr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a C-X-C chemokine to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif [goid 16494] [evidence IEA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	P2Y15; Gpr80	P2Y15; Gpr80
Rattus norvegicus	RefSeq	GI_62655510-S	ILMN_51269	LOC367335	XM_346089.2	XM_346089.2		367335	62655510	XM_346089.2	LOC367335	XP_346090.2	ILMN_1350904	0004730341	S	2408	AGCTTTGCTTCTGGCCTGGTTGTACCGTGTGGAGACTGACCTCCATCTTG					PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (LOC367335), mRNA.					
Rattus norvegicus	RefSeq	GI_62641853-S	ILMN_61861	LOC293723	XM_215147.3	XM_215147.3		293723	62641853	XM_215147.3	LOC293723	XP_215147.3	ILMN_1361751	0002320121	S	3090	GGTGAACCACCCCATTGCACACAATAACAGACTTGCTGGTTGAGCCGGGC					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC37888 (predicted) (LOC293723), mRNA.					
Rattus norvegicus	RefSeq	GI_6978444-S	ILMN_282426	ADARB1	NM_012894.1	NM_012894.1		25367	6978444	NM_012894.1	Adarb1	NP_037026.1	ILMN_1357718	0002260279	S	2446	TGGGCACCTCACATCTGAGTAGGGATCAGGTGCACAGTGGGGGTGCATGG	20	+	11743598-11743647	20p12	Rattus norvegicus adenosine deaminase, RNA-specific, B1 (Adarb1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence IMP]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IMP]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence NAS]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IDA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule [goid 3726] [evidence NAS]; Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule [goid 3726] [evidence IDA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule [goid 3726] [evidence ISS]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Adar2; RED1	Adar2; RED1
Rattus norvegicus	RefSeq	GI_62641436-S	ILMN_63274	NALP10_PREDICTED	XM_219247.3	XM_219247.3		293426	109459215	XM_219247.3	Nalp10_predicted	XP_219247.3	ILMN_1369901	0004540156	S	1917	GGGAAAAGCAGAGAGACAGAGGAACCACCAGCCCAGGACGGAGGAAAGAG	1	+	166418580-166418629	1q33	PREDICTED: Rattus norvegicus NACHT, leucine rich repeat and PYD containing 10 (predicted) (Nalp10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642883-S	ILMN_289044	RGD1560462_PREDICTED	XR_008878.1	XR_008878.1		365664	109466018	XR_008878.1	RGD1560462_predicted		ILMN_1358032	0004060053	S	171	TGGCACCATCAGGATTAAGTCCACCAAGTTCTAGGTGTGCATCCTGGGGG				2q13	PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (predicted) (RGD1560462_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648297-S	ILMN_283604	RGD1560090_PREDICTED	XM_001073468.1	XM_001073468.1		500356	109474438	XM_001073468.1	RGD1560090_predicted	XP_001073468.1	ILMN_1356618	0007100020	S	408	CTGCCACATGAGAGAGGTTGGCTGGGATGAAGGGCAAAAGCTAGCAACCG				4q44	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22655 (predicted) (RGD1560090_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653708-S	ILMN_66515	LOC300731	XM_213130.3	XM_213130.3		300731	62653708	XM_213130.3	LOC300731	XP_213130.1	ILMN_1350797	0001500132	S	1	GCACGAGTGGGGCAGCCATCTTCCAGTAACTCGCCAAAATGACGAACACT				8q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC300731), mRNA.					
Rattus norvegicus	RefSeq	GI_62649264-S	ILMN_66125	LOC500507	XM_575869.1	XM_575869.1		500507	62649264	XM_575869.1	LOC500507	XP_575869.1	ILMN_1362061	0002350131	S	761	CCTGGACTGATGTCACACAGACCCTAAGAGAACACAAATGCCAGCCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500507), mRNA.					
Rattus norvegicus	RefSeq	GI_16758683-S	ILMN_272192	GUCY2F	NM_053831.1	NM_053831.1		116556	16758683	NM_053831.1	Gucy2f	NP_446283.1	ILMN_1363122	0000670672	S	3448	AGGGTTTCACCAAACCTCTTCCTGTACCCCCACCAGTGGGCAAAGATGGG	X	+	36465526-36465574:36465671-36465671	Xq14	Rattus norvegicus guanylate cyclase 2f (Gucy2f), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEP]; Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13242302-S	ILMN_299328	HSD17B4	NM_024392.1	NM_024392.1		79244	13242302	NM_024392.1	Hsd17b4	NP_077368.1	ILMN_1360823	0006620088	S	2295	ACGTTCTGTCTACGCAGTCATGCTCCAGCCTTCTTTGAAACGATCCACGG	18	+	45251317-45251366	18q11	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 4 (Hsd17b4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence ISS]	The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater [goid 38] [evidence IEA]; The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater [goid 38] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence NAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate [goid 60009] [evidence IEA]; The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate [goid 60009] [evidence ISS]	Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA];  [goid 5498] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: testosterone + NAD(P)+ = androst-4-ene-3,17-dione + NAD(P)H + H+ [goid 30283] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62658510-S	ILMN_272234	IQCE_PREDICTED	XM_001073653.1	XM_001073653.1		304318	109496652	XM_001073653.1	Iqce_predicted	XP_001073653.1	ILMN_1364650	0005390148	S	1661	AGCAGCTGAAAGGGGACCAGTCCAAAGAGGACCAGCCCAAAGTGGATCCG				12q11	PREDICTED: Rattus norvegicus IQ motif containing E (predicted) (Iqce_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61098213-S	ILMN_61847	PSME1	NM_017264.2	NM_017264.2		29630	61098213	NM_017264.2	Psme1	NP_058960.2	ILMN_1361208	0006900138	S	863	GCCCCCTCTCTCGTTCTATGATGGGTATAACAGAAACCTTCCTACTCTTG	15	+	33715632-33715681	15p13	Rattus norvegicus proteasome (prosome, macropain) 28 subunit, alpha (Psme1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit complex that activates the hydrolysis of small nonubiquitinated peptides by binding to the proteasome core complex [goid 8537] [evidence IEA]	The process by which an antigen-presenting cell expresses antigen (peptide or lipid) of exogenous origin on its cell surface in association with an MHC protein complex [goid 19884] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence TAS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence IEA]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865397-A	ILMN_267972	LAP3	NM_001011910.1	NM_001011910.1		289668	58865397	NM_001011910.1	Lap3	NP_001011910.1	ILMN_1376674	0005360288	S	1910	GATCCCAGCACTTGGGAGGCAGAGGCAGCTGGATTTCTGACTTTGAGACC	14	-	70680304-70680353	14q21	Rattus norvegicus leucine aminopeptidase 3 (Lap3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8235] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114213-S	ILMN_266707	V1RF2	NM_001008900.1	NM_001008900.1		494252	57114213	NM_001008900.1	V1rf2	NP_001008900.1	ILMN_1363062	0005270450	S	651	GGGGTTCATGGTCTGGGCTAGCACCATTACGGTTCTCATACTTCATAGGC	1	-	59777519-59777568	1q12	Rattus norvegicus vomeronasal 1 receptor, F2 (V1rf2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34882716-S	ILMN_264676	LOC691672	XM_001079224.1	XM_001079224.1		691672	109513656	XM_001079224.1	LOC691672	XP_001079224.1	ILMN_1352042	0006900048	S	560	GAAGAGAGAACTGCTGGTGGAGCAGACTGAACTGCAGGCATCCTCTGTGG	Un|NW_047892.1	-	1732959-1733008		PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC691672), mRNA.					
Rattus norvegicus	RefSeq	GI_62653541-S	ILMN_288442	CRTAM_PREDICTED	XM_001064993.1	XM_001064993.1		300649	109484553	XM_001064993.1	Crtam_predicted	XP_001064993.1	ILMN_1362134	0001050039	S	1085	CCCGGCATTGGAAGATGGAGGGCAAGCACAGTCGTGTCCCCGAGAGTATT				8q22	PREDICTED: Rattus norvegicus cytotoxic and regulatory T cell molecule (predicted) (Crtam_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649229-S	ILMN_268769	RGD1560983_PREDICTED	XR_007539.1	XR_007539.1		500498	109476766	XR_007539.1	RGD1560983_predicted		ILMN_1367813	0004570139	S	881	TGAAAGGAGGAAACTTTGGAGGCGGGGGCTCTGGCCCTGATGGTGGCAGA				5q32	PREDICTED: Rattus norvegicus RGD1560983 (predicted) (RGD1560983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667165-S	ILMN_69900	LOC501614	XM_580219.1	XM_580219.1		501614	62667165	XM_580219.1	LOC501614	XP_580219.1	ILMN_1359650	0001500133	S	430	ATGGATAGCATAAATCTAGGTGTCAGATCACTGAGTACTGGTGGTCAGGC					PREDICTED: Rattus norvegicus LOC501614 (LOC501614), mRNA.					
Rattus norvegicus	RefSeq	GI_62659733-S	ILMN_283023	RGD1561419_PREDICTED	XM_001053966.1	XM_001053966.1		498282	109499036	XM_001053966.1	RGD1561419_predicted	XP_001053966.1	ILMN_1364934	0000050541	S	3469	CCACCTGATGCCATAGAAGGGTCTGAGCCCAGGAGTCGGTTTAGTCTGCC				13q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6030405P05 gene (predicted) (RGD1561419_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866006-S	ILMN_282007	LOC682787	XM_001062348.1	XM_001062348.1		682787	109475999	XM_001062348.1	LOC682787	XP_001062348.1	ILMN_1364194	0002640504	S	366	GTGTTCCGGCAGCAGACAGGTGGTGTCTACTAAAAAGGGAACCTGCTACT					PREDICTED: Rattus norvegicus similar to SMT3 suppressor of mif two 3 homolog 2, transcript variant 2 (LOC682787), mRNA.					
Rattus norvegicus	RefSeq	GI_62658054-S	ILMN_284472	RGD1561572_PREDICTED	XR_007439.1	XR_007439.1		498103	109494605	XR_007439.1	RGD1561572_predicted		ILMN_1349764	0003290347	S	248	TCCTGCGAGCTGCCAAGGAGGCCAAAGAAGCCCCGGCACAACCTGCATCA				11q23	PREDICTED: Rattus norvegicus similar to splicing factor 3a, subunit 2 (predicted) (RGD1561572_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742683-S	ILMN_301200	FGF16	NM_021867.2	NM_021867.2		60464	55742683	NM_021867.2	Fgf16	NP_068639.1	ILMN_1365941	0003390605	S	1371	TTCGTCCTGACATGCAGTTTTCCTGCCACCAGAAAGTGGGAGATATGGGG	X	+	93880557-93880606	Xq31	Rattus norvegicus fibroblast growth factor 16 (Fgf16), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652076-S	ILMN_50904	LOC299762	XM_235136.3	XM_235136.3		299762	62652076	XM_235136.3	LOC299762	XP_235136.3	ILMN_1360627	0003170497	S	2565	TTTACAGCCGCTCTTAGTGTCAGCTCCAGTAGCCATCTCGGTGGACTCGA				7q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA D330034A10 gene (predicted) (LOC299762), mRNA.					
Rattus norvegicus	RefSeq	GI_62655785-S	ILMN_54377	LOC497666	XM_579569.1	XM_579569.1		497666	62655785	XM_579569.1	LOC497666	XP_579569.1	ILMN_1370931	0005570131	S	4244	CCCCTGCCCCTTACAGCCTCCCTATCCAGGAAGAGTCAAACTCAGACACG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053652 (LOC497666), mRNA.					
Rattus norvegicus	RefSeq	GI_62640828-S	ILMN_56280	IL16_MAPPED	XM_218851.4	XM_218851.4		116996	109459013	XM_218851.4	Il16_mapped	XP_218851.3	ILMN_1365194	0005700358	S	4633	GTCACTTCTTGTGCCTCTCCCCAGAGGTGCTGGGTGATGACCGGGAAAGT	1	-	139908409-139908458	1q31	PREDICTED: Rattus norvegicus interleukin 16 (mapped) (Il16_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_56090384-S	ILMN_300596	SMCR7L	NM_001007709.1	NM_001007709.1		315141	56090384	NM_001007709.1	Smcr7l	NP_001007710.1	ILMN_1358742	0006100020	S	1818	TGAATTGGGGTACACCCTCTACTGCTCGTTGTCTGAGCCGGAGGTGCTGC				7q34	Rattus norvegicus Smith-Magenis syndrome chromosome region, candidate 7-like (human) (Smcr7l), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62659927-S	ILMN_55956	LOC498307	XM_579810.1	XM_579810.1		498307	62659927	XM_579810.1	LOC498307	XP_579810.1	ILMN_1370880	0006100072	S	192	TCCCTACAGAACTGGCCTAGAAAGGGTAGGAGATTGGATGCTGCCTTCAC					PREDICTED: Rattus norvegicus LOC498307 (LOC498307), mRNA.					
Rattus norvegicus	RefSeq	GI_62648121-S	ILMN_53298	LOC500311	XM_575661.1	XM_575661.1		500311	62648121	XM_575661.1	LOC500311	XP_575661.1	ILMN_1373937	0002810619	S	1053	CTCCGACATTATGAAGACATGGTAGTGGATGAGTGTGGGTGTGGGTAGAG				4q42	PREDICTED: Rattus norvegicus similar to growth/differentiation factor GDF-3 precursor - mouse (LOC500311), mRNA.					
Rattus norvegicus	RefSeq	GI_47576900-S	ILMN_298610	OLR231	NM_001000206.1	NM_001000206.1		293375	47576900	NM_001000206.1	Olr231	NP_001000206.1	ILMN_1350099	0002810546	S	899	CTGCACTGAGGCGGATCATGCATAGAACTCTGGGTCCTCAGAAGCTATGA	1	+	164389843-164389892	1q33	Rattus norvegicus olfactory receptor 231 (Olr231), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr231; ratchr1-164484422-164485369_ORF	Olr231; ratchr1-164484422-164485369_ORF
Rattus norvegicus	RefSeq	GI_62651986-S	ILMN_276354	LOC679534	XM_001053385.1	XM_001053385.1		679534	109480419	XM_001053385.1	LOC679534	XP_001053385.1	ILMN_1362106	0006650181	S	972	GGCCCCGCGCCCACACCGGGATTTCCATAGGGCTTGTTCACAGACTCTTT	7	+	23855990-23856039	7q13	PREDICTED: Rattus norvegicus hypothetical protein LOC679534 (LOC679534), mRNA.					
Rattus norvegicus	RefSeq	GI_16758425-S	ILMN_300133	ACSL4	NM_053623.1	NM_053623.1		113976	16758425	NM_053623.1	Acsl4	NP_446075.1	ILMN_1371034	0006550504	S	4649	GCTGAGAAGAGGTTAAAGGTTAAAGATTGTGTGGCATTCGGGAACTGGAG	X	+	36231949-36231998	Xq14	Rattus norvegicus acyl-CoA synthetase long-chain family member 4 (Acsl4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence TAS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IDA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	Acs4; Facl4	Acs4; Facl4
Rattus norvegicus	RefSeq	GI_62647779-S	ILMN_271856	MCM2_PREDICTED	XM_001072364.1	XM_001072364.1		312538	109473837	XM_001072364.1	Mcm2_predicted	XP_001072364.1	ILMN_1357317	0003870110	S	2582	GACTTTTGCCCGGTATCTCTCCTTCCGTCGGGATAACAATGACCTGCTGC				4q34	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 2 mitotin (S. cerevisiae) (predicted) (Mcm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642160-S	ILMN_51709	LOC361750	XM_342043.2	XM_342043.2		361750	62642160	XM_342043.2	LOC361750	XP_342044.2	ILMN_1373778	0002350097	S	161	GGCGGACAAGAGCTACATTGAGGGGGAAAAGGCCAGCTTGCCGGGAGTGA					PREDICTED: Rattus norvegicus similar to eukaryotic translation elongation factor 1 beta 2 (LOC361750), mRNA.					
Rattus norvegicus	RefSeq	GI_62657400-S	ILMN_266964	SDK2_PREDICTED	XM_001081634.1	XM_001081634.1		360652	109492169	XM_001081634.1	Sdk2_predicted	XP_001081634.1	ILMN_1369996	0004060593	S	6492	CCAGGCTTACAGCTACACAGAGAGCGATTCCGGCGAACCTGACCACGTCA				10q32.1	PREDICTED: Rattus norvegicus sidekick homolog 2 (chicken) (predicted) (Sdk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27664989-S	ILMN_284465	METTL7A	NM_001037355.1	NM_001037355.1		315306	82654201	NM_001037355.1	Mettl7a	NP_001032432.1	ILMN_1354930	0002970398	S	477	TCGGTGAAGAGCCAAGAGAAGATCCTGCGCGAGGTGTGCCGAGTGCTGAG	7|NW_047795.1	-	77488-77537		Rattus norvegicus methyltransferase like 7A (Mettl7a), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC125112; MGC124657; RGD1308407	MGC125112; MGC124657; RGD1308407
Rattus norvegicus	RefSeq	GI_62653180-S	ILMN_284465	METTL7A	NM_001037355.1	NM_001037355.1		315306	82654201	NM_001037355.1	Mettl7a	NP_001032432.1	ILMN_1349809	0000580672	S	1408	GGGGAGGATTCTGATCAAGTTTCACTGGTCCTGAGTGGGTGTGGTGGCAC					Rattus norvegicus methyltransferase like 7A (Mettl7a), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC125112; MGC124657; RGD1308407	MGC125112; MGC124657; RGD1308407
Rattus norvegicus	RefSeq	GI_62643237-S	ILMN_60968	HPS3_PREDICTED	XM_227003.3	XM_227003.3		310288	62643237	XM_227003.3	Hps3_predicted	XP_227003.3	ILMN_1374848	0000630309	S	2412	CTAGCAGACGAAACCTTGTCGGTTGTTGCTGTGGGACTGGACCTGAGGGA				2q24	PREDICTED: Rattus norvegicus Hermansky-Pudlak syndrome 3 (predicted) (Hps3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655490-S	ILMN_271435	FBXL17_PREDICTED	XM_001071661.1	XM_001071661.1		316663	109487580	XM_001071661.1	Fbxl17_predicted	XP_001071661.1	ILMN_1356074	0000940528	S	2341	TGCAAGAGGACCTTGGAGAGAGCCTACCAGATGGGCTGGACCCCCAACAT				9q37	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 17 (predicted) (Fbxl17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027423-S	ILMN_280735	TRPV4	NM_023970.1	NM_023970.1		66026	13027423	NM_023970.1	Trpv4	NP_076460.1	ILMN_1360233	0002690601	S	3131	CCCGGGCTAGGGTGGGTCTTCTGTACTTTGTAGAGATCGGGGCTGTTGGT	12	+	43265809-43265858	12q16	Rattus norvegicus transient receptor potential cation channel, subfamily V, member 4 (Trpv4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence ISS]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell [goid 6971] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The series of molecular signals initiated in response to osmotic change [goid 7231] [evidence ISS]; The regulated release of vasopressin from secretory granules into the blood [goid 30103] [evidence ISS]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment [goid 42538] [evidence ISS]; Any process that modulates the rate or extent of the response to osmotic stress [goid 47484] [evidence ISS]	 [goid 5034] [evidence ISS]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Vroac; Otrpc4	Vroac; Otrpc4
Rattus norvegicus	RefSeq	GI_62644411-S	ILMN_274239	CENPE_PREDICTED	XM_001077739.1	XM_001077739.1		362044	109467672	XM_001077739.1	Cenpe_predicted	XP_001077739.1	ILMN_1363864	0004560070	S	7537	TCAGGGAAAGATGTGTCCGAGTGCAAAATGCAGTAGACGCCCCTCGGAGC				2q43	PREDICTED: Rattus norvegicus centromere protein E (predicted) (Cenpe_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644409-S	ILMN_274239	CENPE_PREDICTED	XM_001077739.1	XM_001077739.1		362044	109467672	XM_001077739.1	Cenpe_predicted	XP_001077739.1	ILMN_1372505	0006110538	S	2602	CACGTGGAGCTCAAGCACAGACAAGAGGAGGTCCTGGAGGAGAGTGAGAG				2q43	PREDICTED: Rattus norvegicus centromere protein E (predicted) (Cenpe_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17298667-S	ILMN_276521	PIAS3	NM_031784.2	NM_031784.2		83614	17298667	NM_031784.2	Pias3	NP_113972.2	ILMN_1361280	0003060392	S	2672	GCACCTTTTATGGGACATGGGGGCTCTGTTCTCCTTCCCAATACTCAGCG	2	+	191506989-191507038	2q34	Rattus norvegicus protein inhibitor of activated STAT 3 (Pias3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA];  [goid 15459] [evidence IDA]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_14010868-S	ILMN_273236	ALDH3A1	NM_031972.1	NM_031972.1		25375	14010868	NM_031972.1	Aldh3a1	NP_114178.1	ILMN_1357303	0006650471	S	1477	ATGAAGAAGCTCACAAGGCCAGGTATCCCCCAAGCCCAGCCAAGATGCCC	10	+	47374543-47374585:47374679-47374685	10q22	Rattus norvegicus aldehyde dehydrogenase 3 family, member A1 (Aldh3a1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence ISS]; The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [goid 6081] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]	Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence IEA]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence IDA]; Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid [goid 4028] [evidence ISS]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence ISS]; Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+ [goid 4029] [evidence ISS]; Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [goid 4030] [evidence IEA]; Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+ [goid 8106] [evidence ISS]; Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+ [goid 8106] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Aldh3; Aldh; AHDC; Ahd-c	Aldh3; Aldh; AHDC; Ahd-c
Rattus norvegicus	RefSeq	Rn.2374-S	ILMN_269681	SERPINA6	NM_001009663.1	NM_001009663.1		299270	57527134	NM_001009663.1	Serpina6	NP_001009663.1	ILMN_2040005	0004540274	S	1397	ACAAAGTCACTTGAGAAGGGAGCACTGAGAAAGAGGTAACAGTTATTAAA	6	-	127911632-127911681	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A, member 6 (Serpina6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC112780; Serpina6; Cbg	MGC112780; Serpina6; Cbg
Rattus norvegicus	RefSeq	GI_57527134-S	ILMN_269681	SERPINA6	NM_001009663.1	NM_001009663.1		299270	57527134	NM_001009663.1	Serpina6	NP_001009663.1	ILMN_1359537	0005220072	S	1271	CCTGAGAAGCCTTGGTGCCATCTGACTTTGAGGGATGGAAGCCTTTCCCC	6	-	127911758-127911807	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A, member 6 (Serpina6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC112780; Serpina6; Cbg	MGC112780; Serpina6; Cbg
Rattus norvegicus	RefSeq	GI_62647675-S	ILMN_293066	LOC500227	NM_001024330.1	NM_001024330.1		500227	66730263	NM_001024330.1	LOC500227	NP_001019501.1	ILMN_1349838	0006660132	S	1739	CTGAGCAGCAACCCATCCAGACAGGTGTGTCCAAGCCTCAGGTGATTATG	4	+	117373762-117373811	4q34	Rattus norvegicus hypothetical gene supported by BC079424 (LOC500227), mRNA.					
Rattus norvegicus	RefSeq	GI_47578016	ILMN_279939	OLR106	NM_001000147.1	NM_001000147.1		293245	47578016	NM_001000147.1	Olr106	NP_001000147.1	ILMN_1369863	0006590458	S	291	TGCATGTTTCACACAGATGTTCTTTATTCACACTTTCCAAGTCCTTGAAT	1	-	161241153-161241202	1q32	Rattus norvegicus olfactory receptor 106 (Olr106), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr106	Olr106
Rattus norvegicus	RefSeq	GI_42475962-S	ILMN_295730	ACTB	NM_031144.2	NM_031144.2		81822	42475962	NM_031144.2	Actb	NP_112406.1	ILMN_2038798	0005130348	S	663	CGAGCGTGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATCGTGCGTG	12	+	12049225-12049274	12p11	Rattus norvegicus actin, beta (Actb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence IEA]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence ISS]	Actx	Actx
Rattus norvegicus	RefSeq	GI_42475962-S	ILMN_295730	ACTB	NM_031144.2	NM_031144.2		81822	42475962	NM_031144.2	Actb	NP_112406.1	ILMN_1355039	0004760022	S	820	GTCATCACTATCGGCAATGAGCGGTTCCGATGCCCCGAGGCTCTCTTCCA	12	+	12049382-12049431	12p11	Rattus norvegicus actin, beta (Actb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence IEA]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence ISS]	Actx	Actx
Rattus norvegicus	RefSeq	GI_42475962-S	ILMN_295730	ACTB	NM_031144.2	NM_031144.2		81822	42475962	NM_031144.2	Actb	NP_112406.1	ILMN_2038799	0003170100	S	1191	GCACCGCAAATGCTTCTAGGCGGACTGTTACTGAGCTGCGTTTTACACCC	12	+	12049967-12049982:12049983-12050016	12p11	Rattus norvegicus actin, beta (Actb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence IEA]; A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60) [goid 35267] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence ISS]	Actx	Actx
Rattus norvegicus	RefSeq	GI_62641196-S	ILMN_273709	LOC361635	NM_001017463.1	NM_001017463.1		361635	62945281	NM_001017463.1	LOC361635	NP_001017463.1	ILMN_1367362	0003940170	S	2846	GCCCAGTGCCACGTCCTGGAATGCCTGCTTGGCTGTCATCAACTCTTCCT	1	+	177069228-177069277	1q35	Rattus norvegicus similar to RIKEN cDNA 9030624J02 (LOC361635), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_56605693-S	ILMN_262854	CALHM2	NM_001008306.1	NM_001008306.1		294019	56605693	NM_001008306.1	Calhm2	NP_001008307.1	ILMN_1374960	0001980717	S	1589	GCTGGCCCTTAGTATGACAGGAGTGATCTTTGGTGGGCCTCAGAGTTGGG	1	-	252455139-252455188	1q54	Rattus norvegicus calcium homeostasis modulator 2 (Calhm2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC105861; Fam26b	MGC105861; Fam26b
Rattus norvegicus	RefSeq	GI_62650636-S	ILMN_69595	SMARCE1_PREDICTED	XM_234076.3	XM_234076.3		298972	62650636	XM_234076.3	Smarce1_predicted	XP_234076.3	ILMN_1361960	0002480520	S	826	GATGGAAGGGAACCAATGATCCAGCTCACCGCTCAGAGAGCAACAGTGAG				6q21	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (predicted) (Smarce1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882883-S	ILMN_292594	RGD1562031_PREDICTED	XR_008157.1	XR_008157.1		363391	109460697	XR_008157.1	RGD1562031_predicted		ILMN_1359852	0001740142	S	1274	CTTCTGGCAAATCACCTATTATGAAAGAATTCCTAGCTGGCCACAACAGG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (predicted) (RGD1562031_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638450-S	ILMN_292594	RGD1562031_PREDICTED	XR_008157.1	XR_008157.1		363391	109460697	XR_008157.1	RGD1562031_predicted		ILMN_1374679	0006200088	S	1294	ATGAAAGAATTCCTAGCTGGCCACAACAGGAAAACATGCAATAATGGTGT					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (predicted) (RGD1562031_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660875-S	ILMN_59828	LOC360988	XM_341262.2	XM_341262.2		360988	62660875	XM_341262.2	LOC360988	XP_341263.2	ILMN_1355123	0001740086	S	3410	AGCATCAGCCTTCCAGCCCCTGACAGCACCCGCATGATTGGGTCAGCTTT					PREDICTED: Rattus norvegicus similar to ubiquitin specific protease 34 (LOC360988), mRNA.					
Rattus norvegicus	RefSeq	GI_62667003-S	ILMN_297413	RGD1560325_PREDICTED	XR_008107.1	XR_008107.1		302437	109511934	XR_008107.1	RGD1560325_predicted		ILMN_1349940	0006350670	S	533	GGTTCACCAGTGAGGACATGAGCGAAAGGGAGTTCACCAAGGCTGATAGT				Xq22	PREDICTED: Rattus norvegicus similar to Tubulin, beta 6 (predicted) (RGD1560325_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648719-A	ILMN_289062	ATP6V0D2	NM_001011972.1	NM_001011972.1		297932	58865519	NM_001011972.1	Atp6v0d2	NP_001011972.1	ILMN_1376603	0005900008	S	922	GCCTTTGTTTGACGCCGTAGGTGGCAGTGGGGGAAAGACACTGGAAGATG	5	-	34477940-34477989	5q13	Rattus norvegicus ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 (Atp6v0d2), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]	MGC109196	MGC109196
Rattus norvegicus	RefSeq	GI_62665842-S	ILMN_68576	RGD1564149_PREDICTED	XM_574737.2	XM_574737.2		499419	109509332	XM_574737.2	RGD1564149_predicted	XP_574737.2	ILMN_1353296	0000460722	S	662	CACCAGATCCTCATGCAGAACATGATGCTTAAAGCCCTGCCCCCTGGGCC	20	-	12592121-12592170	20p12	PREDICTED: Rattus norvegicus similar to Protein C21orf58 (predicted) (RGD1564149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659963-S	ILMN_262400	RGD1562052_PREDICTED	XM_001066853.1	XM_001066853.1		498310	109499255	XM_001066853.1	RGD1562052_predicted	XP_001066853.1	ILMN_1372949	0000130400	S	1108	GGCACCCCCAGGAAGGGTTTTGTTGATGCACAGCTCTCTCTGTGTGAGGC				13q27	PREDICTED: Rattus norvegicus similar to DC8/DC31 protein (predicted) (RGD1562052_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646866-S	ILMN_62314	RGD1566201_PREDICTED	XM_575387.2	XM_575387.2		500032	109471762	XM_575387.2	RGD1566201_predicted	XP_575387.2	ILMN_1361661	0004670528	S	4494	CCATGCCAAGTTCAGGAGGCCCAGTGTGGAGAAGGAACCAGGACACGGAA	4	-	37634476-37634511:37635055-37635068	4q21	PREDICTED: Rattus norvegicus similar to mKIAA0960 protein (predicted) (RGD1566201_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646864-S	ILMN_62314	RGD1566201_PREDICTED	XM_575387.2	XM_575387.2		500032	109471762	XM_575387.2	RGD1566201_predicted	XP_575387.2	ILMN_1362186	0006180528	S	5154	GTGAAAACCAGTCGGGCAGTTCACCCAACGCAACCCTCCAGTAACCCAGC	4	-	37620098-37620147	4q21	PREDICTED: Rattus norvegicus similar to mKIAA0960 protein (predicted) (RGD1566201_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642347-S	ILMN_282608	BLOC1S2	NM_001037349.1	NM_001037349.1		293938	82654191	NM_001037349.1	Bloc1s2	NP_001032426.1	ILMN_1355092	0003450500	S	542	ATCCCAAGACCACACGATACCACGGATGAACTGGAGGGCTGCGGCTGTTC	1	+	249092976-249093025	1q54	Rattus norvegicus biogenesis of lysosome-related organelles complex-1, subunit 2 (Bloc1s2), mRNA.	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Sep1	Sep1
Rattus norvegicus	RefSeq	GI_57164028-S	ILMN_293878	TRIM25	NM_001009536.1	NM_001009536.1		494338	57164028	NM_001009536.1	Trim25	NP_001009536.1	ILMN_1351248	0004150594	S	2020	CTTGGGCTTGCTGGGGGAACATCCAAGACTGGTAAAAGGTGGGGACCCTC	10	+	77488226-77488275	10q26	Rattus norvegicus tripartite motif-containing 25 (Trim25), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Znf147; Efp; Trim25; MGC72607	Znf147; Efp; Trim25; MGC72607
Rattus norvegicus	RefSeq	GI_62652192-S	ILMN_56951	LOC500838	XM_576230.1	XM_576230.1		500838	62652192	XM_576230.1	LOC500838	XP_576230.1	ILMN_1354011	0004570750	S	192	GAGCGTCAGCGGGGCCGGGTTGGCAGGGTTCAAAGAAGTATTTTCGATTC					PREDICTED: Rattus norvegicus similar to helicase (DNA) B (LOC500838), mRNA.					
Rattus norvegicus	RefSeq	GI_62643507-S	ILMN_270162	RGD1562559_PREDICTED	XM_001063458.1	XM_001063458.1		310460	109466726	XM_001063458.1	RGD1562559_predicted	XP_001063458.1	ILMN_1364520	0004730139	S	2874	TCAGCGTGTTGGCGATGGCTGGTATGAAGGGGAACGACTCCGAGATGGAG				2q31	PREDICTED: Rattus norvegicus similar to SH3-containing guanine nucleotide exchange factor (predicted) (RGD1562559_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642667-S	ILMN_55261	LOC502488	XM_577969.1	XM_577969.1		502488	62642667	XM_577969.1	LOC502488	XP_577969.1	ILMN_1360223	0003780139	S	4	CCCTGTGCCAGTTGAAAGGCATGGGTAAGGACGACTACTTCAGCCTGTTG				2q11	PREDICTED: Rattus norvegicus similar to Ac1147 (LOC502488), mRNA.					
Rattus norvegicus	RefSeq	GI_62654354-S	ILMN_52982	TMEM103_PREDICTED	XM_343489.3	XM_343489.3		363150	109483981	XM_343489.3	Tmem103_predicted	XP_343490.3	ILMN_1365606	0004810040	S	595	TACTGCAGGGCCACGGTGTGCTGCGAACTGAAGGGAAATGTGGTAGCCCT	8	+	114690365-114690397:114694261-114694277	8q32	PREDICTED: Rattus norvegicus transmembrane protein 103 (predicted) (Tmem103_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646890-S	ILMN_280874	CFTR	XM_001062374.1	XM_001062374.1		24255	109471800	XM_001062374.1	Cftr	XP_001062374.1	ILMN_1354543	0001340133	S	1481	TAATGTTCACAGGCCTAGTCATGGAGAATGTAACAGCATTTTGGGAGGAG	4	+	43940790-43940839	4q21	PREDICTED: Rattus norvegicus cystic fibrosis transmembrane conductance regulator homolog (Cftr), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IDA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence TAS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The appearance of interleukin-6 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32635] [evidence ISS]; The appearance of interleukin-8 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32637] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646892-A	ILMN_280874	CFTR	XM_001062374.1	XM_001062374.1		24255	109471800	XM_001062374.1	Cftr	XP_001062374.1	ILMN_1376780	0005670086	S	4619	TCCAGCGAGCCCTTAGCTCCTCAGAAAAGATGAAGCTCTTCCACGGCCGG	4	+	44040018-44040067	4q21	PREDICTED: Rattus norvegicus cystic fibrosis transmembrane conductance regulator homolog (Cftr), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IDA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence TAS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The appearance of interleukin-6 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32635] [evidence ISS]; The appearance of interleukin-8 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 32637] [evidence ISS]; An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure [goid 42311] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_67078493	ILMN_264245	SLC36A3	NM_001024764.1	NM_001024764.1		303148	67078493	NM_001024764.1	Slc36a3	NP_001019935.1	ILMN_1530488	0004780017	S	1614	CATGCTCAACTCTACAAATGTCCACACATAATTACCTATTTTTATTTGAA	10	-	40526615-40526634:40526635-40526664	10q22	Rattus norvegicus solute carrier family 36 (proton/amino acid symporter), member 3 (Slc36a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62656095-S	ILMN_264245	SLC36A3	NM_001024764.1	NM_001024764.1		303148	67078493	NM_001024764.1	Slc36a3	NP_001019935.1	ILMN_1362211	0002030056	S	1568	GGACGTACCAAGCCCTCTACGAGATGACCCAGCAGAGCCGTTTTCCCATG	10	-	40526661-40526710	10q22	Rattus norvegicus solute carrier family 36 (proton/amino acid symporter), member 3 (Slc36a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62643153-S	ILMN_276162	RGD1305844	NM_001024978.1	NM_001024978.1		294883	68163386	NM_001024978.1	RGD1305844	NP_001020149.1	ILMN_1353565	0004560494	S	1342	TCCTCTTGGCTATTGTCTCTCGTGCAGTGGAAATGGAAGAGACCATCCCC	2	-	89038425-89038474	2q23	Rattus norvegicus hypothetical LOC294883 (RGD1305844), mRNA.					
Rattus norvegicus	RefSeq	GI_62718538-S	ILMN_267465	LOC688587	XM_001067520.1	XM_001067520.1		688587	109513253	XM_001067520.1	LOC688587	XP_001067520.1	ILMN_1364453	0001690619	S	553	GACCAGCAACCTCCAGACCCAGCAAAATGTGGTCTCAGGAACTGCAGGAG	Un|NW_047874.1	+	570566-570596:571312-571330		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC688587), mRNA.					
Rattus norvegicus	RefSeq	GI_6978624-S	ILMN_276685	CD28	NM_013121.1	NM_013121.1		25660	6978624	NM_013121.1	Cd28	NP_037253.1	ILMN_1367487	0000270703	S	781	CCGGCCACCTTGGACCTCTACTGGGCCACCAATGCCCACTATTTTAAGAG	9	+	59367247-59367296	9q31	Rattus norvegicus Cd28 molecule (Cd28), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	Any process that activates or increases the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2863] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2863] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IEA]; The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation [goid 31295] [evidence ISS]; The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation [goid 31295] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence IMP]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45086] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes [goid 48304] [evidence IEA]; Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger, and in cooperation with a nearby primary receptor, initiating a change in cell activity [goid 15026] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	CD28RNA	CD28RNA
Rattus norvegicus	RefSeq	GI_41054881-S	ILMN_269999	ZFHX2	XM_001078359.1	XM_001078359.1		305888	109501657	XM_001078359.1	Zfhx2	XP_001078359.1	ILMN_1366771	0006900601	S	7966	GCCAAAGAGGAAGCAAGATTACCTCACACGGACCCCAACCCCCAAACTAC	15	-	33167443-33167492	15p13	PREDICTED: Rattus norvegicus zinc finger homeobox 2 (Zfhx2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663100-S	ILMN_262888	LOC680222	XM_001056172.1	XM_001056172.1		680222	109504554	XM_001056172.1	LOC680222	XP_001056172.1	ILMN_1357570	0000070672	S	1463	GGTCACATTGTCCTTGGTGCCTGGAGAAAGGCTGTGGTTTTGGGCAGTGG	17	-	5201368-5201417	17p14	PREDICTED: Rattus norvegicus similar to zinc finger protein 748 isoform 2 (LOC680222), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34877528-S	ILMN_64463	SPATA3_PREDICTED	XM_343612.2	XM_343612.2		363270	109486308	XM_343612.2	Spata3_predicted	XP_343613.2	ILMN_1349634	0002630014	S	380	GCCATAGCCGAATCTTTGATGTCCTTCTGCCTCGGGACTGGTCATCCATG	9	+	84731898-84731947	9q35	PREDICTED: Rattus norvegicus spermatogenesis associated 3 (predicted) (Spata3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873217-S	ILMN_284311	TMIGD_PREDICTED	XM_001080775.1	XM_001080775.1		363654	109491354	XM_001080775.1	Tmigd_predicted	XP_001080775.1	ILMN_1369695	0006130195	S	445	GTCCAACCCTCAAGCGCAAATGCTGTGGTACAGAAACAACAGCGCCTTGG				10q26	PREDICTED: Rattus norvegicus transmembrane and immunoglobulin domain containing (predicted) (Tmigd_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657997-S	ILMN_278690	MUC4	XM_001072593.1	XM_001072593.1		303887	109494506	XM_001072593.1	Muc4	XP_001072593.1	ILMN_1372739	0004280056	S	8014	GTCTGCCCCTGCTCTAGGGAGACTGGAAAGGGCCGACTGCATGAAGATGA				11q22	PREDICTED: Rattus norvegicus mucin 4 (Muc4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]	Interacting selectively with the protein-tyrosine kinase receptor Neu/ErbB-2/HER2 [goid 5176] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656018-S	ILMN_273650	RGD1310147_PREDICTED	XM_001070820.1	XM_001070820.1		360520	109490618	XM_001070820.1	RGD1310147_predicted	XP_001070820.1	ILMN_1351951	0000630176	S	4267	AGGACTGAGGAAGCAGGAGAATGTCTGTTGCATGGGTAGGAGCACCGCAC				10q22	PREDICTED: Rattus norvegicus similar to TBC1 domain family, member 8; BUB2-like protein 1; vascular Rab-GAP/TBC-containing (predicted), transcript variant 5 (RGD1310147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662120-S	ILMN_65885	LOC502038	XM_577470.1	XM_577470.1		502038	62662120	XM_577470.1	LOC502038	XP_577470.1	ILMN_1357505	0003840619	S	484	CCAATAACTCTGTGGTGCAGGTTGGAGGGAAATCAGCAGAGGGCGCTGTC					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain precursor V region (3.1) - mouse (fragment) (LOC502038), mRNA.					
Rattus norvegicus	RefSeq	GI_62652676-S	ILMN_58489	LOC500901	XM_576303.2	XM_576303.2		500901	109480942	XM_576303.2	LOC500901	XP_576303.2	ILMN_1365990	0001230037	S	3227	ATCGCTGCTGAAGCTGTGGTATCGGGAGCTGGAAGAGCCCTTGATTCCTC	7	-	114778504-114778553	7q34	PREDICTED: Rattus norvegicus similar to Protein KIAA1688 (LOC500901), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645976-S	ILMN_62221	LOC499902	XM_575248.1	XM_575248.1		499902	62645976	XM_575248.1	LOC499902	XP_575248.1	ILMN_1371817	0003780204	S	0	AATCTTGCATGAGGACATTCTACAATGTCACCCAGCATGCCCTGGGCATC				3q41	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC499902), mRNA.					
Rattus norvegicus	RefSeq	GI_9845250-S	ILMN_298529	FRAP1	NM_019906.1	NM_019906.1		56718	9845250	NM_019906.1	Frap1	NP_063971.1	ILMN_1361395	0006130647	S	8316	GTCCACGCTGGCCCTGCTGCTGTGTTCAGTGAGGGATGGATATGTTGTGT	5	+	165640662-165640711	5q36	Rattus norvegicus FK506 binding protein 12-rapamycin associated protein 1 (Frap1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 5979] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen [goid 5979] [evidence IMP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates [goid 6109] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates [goid 6109] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of macroautophagy [goid 16242] [evidence ISS]; The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide [goid 16310] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IGI]; Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation [goid 31998] [evidence IDA]; Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation [goid 31998] [evidence IMP]; Any process that modulates the frequency, rate or extent of a response to a food stimulus [goid 32095] [evidence IDA]; Any process that modulates the frequency, rate or extent of a response to a food stimulus [goid 32095] [evidence IMP]; Any process that modulates the frequency, rate or extent of carbohydrate utilization [goid 43610] [evidence IDA]; Any process that modulates the frequency, rate or extent of carbohydrate utilization [goid 43610] [evidence IMP]; Any process that reduces cell size [goid 45792] [evidence ISS]; Any process that reduces cell size [goid 45792] [evidence IMP]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence ISS]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IMP]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IPI]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Interacting selectively with a phosphorylated protein [goid 51219] [evidence ISS]	mTOR; RAFT1	mTOR; RAFT1
Rattus norvegicus	RefSeq	GI_58865667-A	ILMN_278280	FBXO8	NM_001012050.1	NM_001012050.1		306436	58865667	NM_001012050.1	Fbxo8	NP_001012050.1	ILMN_1376315	0004210059	S	1236	CAGGGACAGACTTAGTGGCAGCAGGGTTGCATCAGCACTGGTCACTCCAG	16	-	37094148-37094197	16p11	Rattus norvegicus F-box protein 8 (Fbxo8), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence ISS]; Any process that modulates the frequency, rate or extent of ARF protein signal transduction [goid 32012] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5086] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576680-S	ILMN_274429	OLR84	NM_001000137.1	NM_001000137.1		293227	47576680	NM_001000137.1	Olr84	NP_001000137.1	ILMN_1374316	0002510519	S	878	ATCTCCTTGTACCACCCATGGTGAACCCCATTATTTATGGTGTGAGGACC	1	+	160971285-160971334	1q32	Rattus norvegicus olfactory receptor 84 (Olr84), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr84	Olr84
Rattus norvegicus	RefSeq	GI_62642762-S	ILMN_277953	LOC683538	XM_001066436.1	XM_001066436.1		683538	109465890	XM_001066436.1	LOC683538	XP_001066436.1	ILMN_1368888	0001980400	S	515	ATGCCAAGGAGTGCCTCAATCTCCTGTCGAACAGACTGGGAACATCTCAG					PREDICTED: Rattus norvegicus similar to metaxin 3 (LOC683538), mRNA.					
Rattus norvegicus	RefSeq	GI_47577018-S	ILMN_301792	OLR283	NM_001001010.1	NM_001001010.1		405384	47577018	NM_001001010.1	Olr283	NP_001001010.1	ILMN_1362043	0004540112	S	207	GGAGACTGGCTTCAGCACAACCGTTATGCCCGAAATGCTGGTGGTCCTGA	1	+	166498293-166498342	1q33	Rattus norvegicus olfactory receptor 283 (Olr283), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr283	Olr283
Rattus norvegicus	RefSeq	GI_62645441-S	ILMN_273117	RGD1561224_PREDICTED	XR_009279.1	XR_009279.1		499842	109470374	XR_009279.1	RGD1561224_predicted		ILMN_2039913	0006520356	S	1169	TCACCTGAACAGGCACAAGCTGCATGGGACATCAGTGCACATTACACCGT				3q31	PREDICTED: Rattus norvegicus similar to Ptbp1 protein (predicted) (RGD1561224_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978718-S	ILMN_302998	CTSE	NM_012938.1	NM_012938.1		25424	6978718	NM_012938.1	Ctse	NP_037070.1	ILMN_1363547	0006100142	S	1573	TAGCCACGCAGCTATGCCTCACGTCACAACCCATCCATGTGTGGCTCAGC	13	+	44604973-44605022	13q13	Rattus norvegicus cathepsin E (Ctse), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [pmid 9572291] [evidence IDA]	The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [pmid 8491674] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [pmid 8157122] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	CEB; CEA; Ctsea	CEB; CEA; Ctsea
Rattus norvegicus	RefSeq	GI_62638531-S	ILMN_54250	LOC499019	XM_574312.1	XM_574312.1		499019	62638531	XM_574312.1	LOC499019	XP_574312.1	ILMN_1375200	0002510446	S	134	GGAGGGACTGCCCACTCACTGTTGTGAGAGAATGACCCCCTTGGAGTGTT					PREDICTED: Rattus norvegicus similar to LRRGT00149 (LOC499019), mRNA.					
Rattus norvegicus	RefSeq	GI_62642646-S	ILMN_54168	SPATA9_PREDICTED	XM_215434.4	XM_215434.4		294594	109464185	XM_215434.4	Spata9_predicted	XP_215434.3	ILMN_1366958	0003440079	S	642	ACTGCCAGAGAAGCCAGACCACCTCTCAGATCAACCCAAGCCTCCTGCCA	2	+	3051671-3051720	2q11	PREDICTED: Rattus norvegicus spermatogenesis associated 9 (predicted) (Spata9_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.3987	ILMN_272564	LOC684681	XM_001071565.1	XM_001071565.1		684681	109505800	XM_001071565.1	LOC684681	XP_001071565.1	ILMN_1530238	0004810575	S	986	TTTTCAGAGCCACCACATCCACTTAAGAGCTGTGACACTTTGATAATTAA					PREDICTED: Rattus norvegicus similar to Histone H1.2 (H1 VAR.1) (H1c) (LOC684681), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658943-S	ILMN_280032	MAPKAPK5	NM_001025761.1	NM_001025761.1		498183	71043791	NM_001025761.1	Mapkapk5	NP_001020932.1	ILMN_1349323	0004230739	S	1159	AGCTGGCAGAGGTTGTGAAGCAGGTGATCGAAGAGCAGACCCTTCCCCAC	12	+	36147345-36147394	12q16	Rattus norvegicus MAP kinase-activated protein kinase 5 (Mapkapk5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_60678271-S	ILMN_278034	NOL12	NM_001012747.2	NM_001012747.2		362955	75832147	NM_001012747.2	Nol12	NP_001012765.1	ILMN_1368747	0003940368	S	545	AAGAAGGTCAAGAGGAAACACCCTCGGCGGGCGCAGGACTCCACCAAGAA	7	+	116906946-116906995	7q34	Rattus norvegicus nucleolar protein 12 (Nol12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]		Interacting selectively with ribosomal RNA [goid 19843] [evidence IDA]	Nop25; MGC124902	Nop25; MGC124902
Rattus norvegicus	RefSeq	GI_62653791-S	ILMN_271278	ITGA11_PREDICTED	XM_001075650.1	XM_001075650.1		315744	109484842	XM_001075650.1	Itga11_predicted	XP_001075650.1	ILMN_1368972	0005690347	S	4664	GAACCTTAAACCTCAGAGGCAGATAGGCATCTCACTGGCCAGCTCTCGGG				8q24	PREDICTED: Rattus norvegicus integrin, alpha 11 (predicted) (Itga11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649325-S	ILMN_68892	DHCR24	XM_216452.4	XM_216452.4		298298	109475214	XM_216452.4	Dhcr24	XP_216452.4	ILMN_1359468	0002940347	S	4163	GGTCTTCCAGGCATGGTGTACGGGGTCCCAGCCTTGTCTTAAAGCCTGTC	5	+	127664471-127664520	5q34	PREDICTED: Rattus norvegicus 24-dehydrocholesterol reductase (Dhcr24), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IMP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure [goid 9888] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 16125] [evidence ISS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; The process whereby plasminogen is processed to plasmin. This process includes both the cleavage of plasminogen between Arg560-Val561 to form plasmin and cleavage at Arg310 by plasmin or trypsin to result in the final two-chain form of plasmin held together by disulfide bonds [goid 31639] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42987] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence NAS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]; Catalysis of the reaction: NADP+ + 5-alpha-cholest-7-en-3-beta-ol = NADPH + H+ + 5-alpha-cholesta-7,24-dien-3-beta-ol [goid 50614] [evidence ISS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651224-S	ILMN_53061	LOC500715	XM_580110.1	XM_580110.1		500715	62651224	XM_580110.1	LOC500715	XP_580110.1	ILMN_1353597	0001230162	S	913	GTATGGGAGGCAAGGACAAGCTCTTTGGGCTGTGTGGGGCTCTAAGTACC				6q32	PREDICTED: Rattus norvegicus similar to cyclin K (LOC500715), mRNA.					
Rattus norvegicus	RefSeq	GI_62643769-S	ILMN_63993	LOC499654	XM_574978.1	XM_574978.1		499654	62643769	XM_574978.1	LOC499654	XP_574978.1	ILMN_1354182	0002320180	S	3630	TACTGGATGGAAGCCTGGACACCCCTGGTGGGTAAGCCTGTGCCAATGGT					PREDICTED: Rattus norvegicus similar to Ac2-125 (LOC499654), mRNA.					
Rattus norvegicus	RefSeq	GI_62653233-S	ILMN_65509	SESN3_PREDICTED	XM_235825.4	XM_235825.4		315427	109483055	XM_235825.4	Sesn3_predicted	XP_235825.3	ILMN_1353619	0000430435	S	1702	TGCGGGCCATAACTCGGCATCTGACCTGAAGCACCTGCAGGACGGTGTCA	8	+	11124202-11124230:11124231-11124251	8q11	PREDICTED: Rattus norvegicus sestrin 3 (predicted) (Sesn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758327-S	ILMN_271877	BUD31	NM_053556.1	NM_053556.1		89819	16758327	NM_053556.1	Bud31	NP_446008.1	ILMN_1366064	0003060239	S	532	CTGCATTTGCCGGGTTCCCAAGAGCAAGCTGGAAGTGGGTCGCATCATCG	12	-	9777155-9777174:9778386-9778415	12p11	Rattus norvegicus BUD31 homolog (yeast) (Bud31), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Edg2	Edg2
Rattus norvegicus	RefSeq	GI_62647917-S	ILMN_66594	LOC502865	XM_578365.1	XM_578365.1		502865	62647917	XM_578365.1	LOC502865	XP_578365.1	ILMN_1365693	0005900601	S	2231	ACAGGGCCGTACCACGACATCCAAACCAGCCGGAAGACTGGCCTATCAGT					PREDICTED: Rattus norvegicus similar to Suclg2_predicted protein (LOC502865), mRNA.					
Rattus norvegicus	RefSeq	GI_62652049-S	ILMN_49699	KERA_PREDICTED	XM_235082.3	XM_235082.3		314771	109480506	XM_235082.3	Kera_predicted	XP_235082.1	ILMN_1358964	0000670195	S	988	GTGGCCTTCCTGAGGCTCAACCACAACAAGCTATCAGATGCAGGTCTCCC	7	+	35124182-35124231	7q13	PREDICTED: Rattus norvegicus keratocan (predicted) (Kera_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649834-S	ILMN_288420	RGD1562033_PREDICTED	XR_008445.1	XR_008445.1		500565	109477483	XR_008445.1	RGD1562033_predicted		ILMN_1352511	0003520427	S	70	AGATCATGGCCGATGGCGAGCCCTTGGGCCGAGTCTCCTTCGAGCTGTTT				5q36	PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase A (cyclophilin A)) (predicted) (RGD1562033_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799401	ILMN_300376	PLRG1	NM_021757.2	NM_021757.2		60376	56799401	NM_021757.2	Plrg1	NP_068525.1	ILMN_1651075	0000050685	S	1642	CCTCATGGCTGTCCTGTTCATAGCTTGGTGTTGCTGAGGATGTCCAGTCA	2	+	174796630-174796679	2q34	Rattus norvegicus pleiotropic regulator 1, PRL1 homolog (Arabidopsis) (Plrg1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy [goid 16607] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105439	MGC105439
Rattus norvegicus	RefSeq	GI_34879476-S	ILMN_266348	HTR5B	XM_341111.1	XM_341111.1		79247	34879476	XM_341111.1	Htr5b	XP_341112.1	ILMN_1362060	0003440563	S	1833	CCATCAGAGCACTTTACCTTTCTTAGCCTCACACAGGACCTCCACAAGGC	13	-	33545463-33545512	13q11	PREDICTED: Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 5B (Htr5b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62640830-S	ILMN_56378	RGD1310371	XM_218852.4	XM_218852.4		308794	109458928	XM_218852.4	RGD1310371	XP_218852.3	ILMN_1365339	0000360735	S	1152	GTGAAGAACTTAGTGCCCCCCTTCAGAGCCCCTTGCCTACAGGACCAACG	1	-	140036512-140036561	1q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700026D08 (RGD1310371), mRNA.					
Rattus norvegicus	RefSeq	GI_62665216-S	ILMN_60564	LOC361291	XM_341576.2	XM_341576.2		361291	62665216	XM_341576.2	LOC361291	XP_341577.2	ILMN_1361556	0005050131	S	532	ATCTCCCAGCCAGGGAAGGAAACAGGACTCATACTTGGAAGGGCTCTCCC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC361291), mRNA.					
Rattus norvegicus	RefSeq	GI_13592062-S	ILMN_284909	RPL37	NM_031106.1	NM_031106.1		81770	13592062	NM_031106.1	Rpl37	NP_112368.1	ILMN_1354107	0006840133	S	2	TCCGGTCTCTTTGGCCTCGCCGGTAGAAGCAAGATGACGAAAGGAACGTC	2	+	54302356-54302388:54302389-54302391:54302972-54302985	2q16	Rattus norvegicus ribosomal protein L37 (Rpl37), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642489-S	ILMN_66852	LOC499376	XM_579955.2	XM_579955.2		499376	109460261	XM_579955.2	LOC499376	XP_579955.2	ILMN_1365761	0002810563	S	455	TGCGTAGGGCAGCGACGACGGCATGGAAACGCACAGACAGGAAACAGGAA	1	-	259642167-259642216	1q55	PREDICTED: Rattus norvegicus hypothetical LOC499376 (LOC499376), mRNA.					
Rattus norvegicus	RefSeq	GI_47577522-S	ILMN_291858	OLR675	NM_001000632.1	NM_001000632.1		404825	47577522	NM_001000632.1	Olr675	NP_001000632.1	ILMN_1364110	0001450463	S	670	CTGAGAACCCACAGCTCTGAAGGTCGATGTAAAGCTCTCTCTACCTGTGG	3	-	73349448-73349497	3q24	Rattus norvegicus olfactory receptor 675 (Olr675), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr675	Olr675
Rattus norvegicus	RefSeq	GI_62663647	ILMN_60931	LOC291209	XM_225450.3	XM_225450.3		291209	62663647	XM_225450.3	LOC291209	XP_225450.3	ILMN_1651188	0004570739	S	8285	TTGTGCTGTCTGTTCATATCTTCAATTAGTGTGAGGCCATCCCCTGGAAG				17q12.1	PREDICTED: Rattus norvegicus similar to HECT type E3 ubiquitin ligase (LOC291209), mRNA.					
Rattus norvegicus	RefSeq	GI_62664497-S	ILMN_61022	RGD1310242	XM_225899.4	XM_225899.4		307404	109506677	XM_225899.4	RGD1310242	XP_225899.4	ILMN_1354342	0001240403	S	1509	TTACCCAGCTGCGAACCCTCGGGCCCATCCTGACTTTAATGGGGGTGCTT	18	+	56871239-56871288	18q12.1	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330196J05 (RGD1310242), mRNA.					
Rattus norvegicus	RefSeq	GI_47576810-S	ILMN_285562	OLR197	NM_001000188.1	NM_001000188.1		293339	47576810	NM_001000188.1	Olr197	NP_001000188.1	ILMN_1371127	0003120427	S	443	GCCTAGTGGCACTGCGAGGTGTGGGTTTAACCATCTTCTTTCCGAGCCTG	1	-	162987013-162987062	1q33	Rattus norvegicus olfactory receptor 197 (Olr197), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr197	Olr197
Rattus norvegicus	RefSeq	GI_20514777-S	ILMN_287769	EXOC8	NM_139043.1	NM_139043.1		245709	20514777	NM_139043.1	Exoc8	NP_620612.1	ILMN_1365432	0002060039	S	2184	CTCCCAGTGGTGGAGAGGAGGTTTGAGGAAGGTGTAGGGAAGCCTGCCAA	19	-	55066528-55066577	19q12	Rattus norvegicus exocyst complex component 8 (Exoc8), mRNA.	A protein complex peripherally associated with the plasma membrane that determines where secretory vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals [goid 145] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Exo84	Exo84
Rattus norvegicus	RefSeq	GI_62645010-S	ILMN_278273	LOC689746	XM_001071863.1	XM_001071863.1		689746	109468088	XM_001071863.1	LOC689746	XP_001071863.1	ILMN_1356438	0001580022	S	2542	GGCCGGTCCCACCAAAGAAACACCCCTCAGATGAACCGCACAACCCATTC	3	-	14865273-14865322	3p11	PREDICTED: Rattus norvegicus similar to Tubulin--tyrosine ligase-like protein 11 (LOC689746), mRNA.					
Rattus norvegicus	RefSeq	GI_52345384-A	ILMN_299213	PDIA6	NM_001004442.1	NM_001004442.1		286906	52345384	NM_001004442.1	Pdia6	NP_001004442.1	ILMN_1376346	0006980154	S	1462	CCGGCCACTGGAAACTGCCAACAGTGAACCTCAGCGTCTCAAGAAAACAC	6|NW_047768.1	+	199086-199135		Rattus norvegicus protein disulfide isomerase family A, member 6 (Pdia6), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence TAS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence TAS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	Txndc7; P5; CaBP1	Txndc7; P5; CaBP1
Rattus norvegicus	RefSeq	GI_62639729-S	ILMN_275163	TRPM4	XM_001080721.1	XM_001080721.1		171143	109461919	XM_001080721.1	Trpm4	XP_001080721.1	ILMN_1370393	0002810600	S	3784	AAGCTACACAACTGGTGGCCTTGTCCTCACCGTAGACCCCATGTTCAGGG				1q22	PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 4 (Trpm4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663303-S	ILMN_57792	LOC361220	XM_341502.2	XM_341502.2		361220	62663303	XM_341502.2	LOC361220	XP_341503.2	ILMN_1371873	0006040037	S	328	TCGGTTGCCGATCAAACATACAGCACGTCATTGTTCAGGCCTGTAGGCCG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC361220), mRNA.					
Rattus norvegicus	RefSeq	GI_34853849-S	ILMN_59702	RGD1308742_PREDICTED	XM_342422.2	XM_342422.2		362120	109468084	XM_342422.2	RGD1308742_predicted	XP_342423.2	ILMN_1373818	0003060170	S	429	CACTCCAGAACAGCCTGTGAAGGTTGCCGTCTACTCAGTGGATGATGACC	3	-	14149805-14149838:14154655-14154670	3p11	PREDICTED: Rattus norvegicus similar to Complement C5 precursor (predicted) (RGD1308742_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666505-S	ILMN_295540	RGD1561575_PREDICTED	XR_007584.1	XR_007584.1		367720	109511476	XR_007584.1	RGD1561575_predicted		ILMN_1354134	0002030341	S	698	AGGAGATGAGGAGACTGTGCAGAAAGGCATGGAAGCTGTGCCTGCTTAGG				Xq12	PREDICTED: Rattus norvegicus similar to Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B) (predicted) (RGD1561575_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641087-S	ILMN_68960	RGD1308274_PREDICTED	XM_219130.4	XM_219130.4		293347	109459197	XM_219130.4	RGD1308274_predicted	XP_219130.4	ILMN_1373166	0003440154	S	7076	TCCCATATAAGAACTACCGACAGGCAGGAGGGGATTATGCCACATGGAGC	1	-	163589268-163589317	1q33	PREDICTED: Rattus norvegicus similar to very large inducible GTPase-1 (predicted) (RGD1308274_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11968129	ILMN_56065	PPAP2A	NM_022538.1	NM_022538.1		64369	11968129	NM_022538.1	Ppap2a	NP_071983.1	ILMN_1650461	0000870452	S	809	CTCTACACGAAACCACCAACAGACAGAGCTACGCAAGGAATCACGAGCCC				2q14	Rattus norvegicus phosphatidic acid phosphatase 2a (Ppap2a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]	Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence ISS]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence TAS]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence ISS]; Catalysis of the reaction: a 3-sn-phosphatidate + H2O = a 1,2-diacyl-sn-glycerol + phosphate [goid 8195] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742762-S	ILMN_298208	HSPA5	NM_013083.1	NM_013083.1		25617	25742762	NM_013083.1	Hspa5	NP_037215.1	ILMN_1351240	0002850373	S	2179	TCATTAGCAGTTGCTCACGTGTCTTGGGGTCAGGGAGAGGAGGAATTGGC	3	+	13787818-13787867	3p11	Rattus norvegicus heat shock protein 5 (Hspa5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A cytosolic endopeptidase with specificity for the hydrolysis of aspartyl bonds. Caspases are involved in apoptosis [goid 8303] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with any part of a ribosome [goid 43022] [evidence ISS]; Interacting selectively with any part of a ribosome [goid 43022] [evidence IEA]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence ISS]	BIP	BIP
Rattus norvegicus	RefSeq	GI_62079118-S	ILMN_296196	PPP2R3C	NM_001014196.1	NM_001014196.1		362739	62079118	NM_001014196.1	Ppp2r3c	NP_001014218.1	ILMN_1350608	0001940133	S	1553	CCTTCATGAGGATGCCTGAATGCTGCATGCAAAACCCTGGAAGCAGAACC	6	-	75516542-75516591	6q23	Rattus norvegicus protein phosphatase 2, regulatory subunit B'', gamma (Ppp2r3c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653823-S	ILMN_274609	CILP_PREDICTED	XM_001076441.1	XM_001076441.1		315761	109484881	XM_001076441.1	Cilp_predicted	XP_001076441.1	ILMN_1362842	0001770338	S	3633	CCGGCGTGGAAGCATGGCCCCTCTGAGATTTTCTGGTGTCGCTCAACAAC				8q24	PREDICTED: Rattus norvegicus cartilage intermediate layer protein, nucleotide pyrophosphohydrolase (predicted) (Cilp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642910-S	ILMN_67391	RGD1309504_PREDICTED	XM_226755.3	XM_226755.3		294732	109464378	XM_226755.3	RGD1309504_predicted	XP_226755.1	ILMN_1361229	0004210193	S	1039	ACCCGGGCATTGCCGACAGGATGCAGAAGGAAATCGTAACCTTGGCACCA	2	+	42586757-42586806	2q14	PREDICTED: Rattus norvegicus similar to cytoplasmic beta-actin (predicted) (RGD1309504_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928985-S	ILMN_266152	RPS8	NM_031706.1	NM_031706.1		65136	13928985	NM_031706.1	Rps8	NP_113894.1	ILMN_1362384	0004810451	S	2	TCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACAACTGGCACA	5	-	137468844-137468868:137469249-137469252:137469253-137469273	5q36	Rattus norvegicus ribosomal protein S8 (Rps8), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656769-S	ILMN_67601	LOC303437	XM_220846.3	XM_220846.3		303437	62656769	XM_220846.3	LOC303437	XP_220846.3	ILMN_1360305	0006860632	S	2141	CGAGCTCCAGATGGCAGTGGCGGCTCTCCTGAAGCAGATCAATATACCTC				10q26	PREDICTED: Rattus norvegicus similar to novel protein (likely ortholog to homo sapiens FLJ38335) (LOC303437), mRNA.					
Rattus norvegicus	RefSeq	GI_62661826-S	ILMN_63238	LOC306137	XM_224510.3	XM_224510.3		306137	62661826	XM_224510.3	LOC306137	XP_224510.3	ILMN_1352237	0002360131	S	3342	CCGTGGAGACGGAAGAAGCCGAGCCTGACGAAGAGGAATTTCAGGAAGAG				15q22	PREDICTED: Rattus norvegicus similar to CG10084-PA (predicted) (LOC306137), mRNA.					
Rattus norvegicus	RefSeq	GI_13928989-S	ILMN_268470	ADRM1	NM_031708.1	NM_031708.1		65138	13928989	NM_031708.1	Adrm1	NP_113896.1	ILMN_1359370	0002060537	S	1028	GCCCCAGACTGCAGAGGAGATCCAGAACACATTAACCTCGCCCCAGTTCC	3	+	169233205-169233254	3q43	Rattus norvegicus adhesion regulating molecule 1 (Adrm1), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The aggregation, arrangement and bonding together of a mature, active proteasome complex [goid 43248] [evidence ISS]; The aggregation, arrangement and bonding together of a mature, active proteasome complex [goid 43248] [evidence ISS]	Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence ISS]; Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis [goid 8538] [evidence ISS]	Gp110	Gp110
Rattus norvegicus	RefSeq	GI_62644630-S	ILMN_63449	LOC499737	XM_575071.1	XM_575071.1		499737	62644630	XM_575071.1	LOC499737	XP_575071.1	ILMN_1352611	0005690279	S	333	GTAAGGCAGAAAAAGCTACTGGTCCAAAACATACAGGAAATCCAGGACTC					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499737), mRNA.					
Rattus norvegicus	RefSeq	GI_58865765-A	ILMN_262480	RECQL	NM_001012098.1	NM_001012098.1		312824	58865765	NM_001012098.1	Recql	NP_001012098.1	ILMN_1376291	0006370500	S	2223	GCACTCTGATCTAAGTAAACCGAGACAGCAAGCCTCCTGAAACCCCAGCC	4	-	179927371-179927420	4q44	Rattus norvegicus RecQ protein-like (DNA helicase Q1-like) (Recql), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13786179-S	ILMN_302982	SLC6A2	NM_031343.1	NM_031343.1		83511	13786179	NM_031343.1	Slc6a2	NP_112633.1	ILMN_1362601	0005890484	S	2079	CTGGCCCTGGTTGGTGAATGTGAAGTCTGGGGGGTGCCTTCCTTGCTCTA	19	-	15098357-15098406	19p11	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 (Slc6a2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IMP]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence ISS]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence ISS]; The directed movement of norepinephrine into, out of, within or between cells. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 15874] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of norepinephrine from one side of the membrane to the other. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 5333] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), from one side of the membrane to the other [goid 8504] [evidence ISS]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Net	Net
Rattus norvegicus	RefSeq	GI_62639114-S	ILMN_61319	CBLC_PREDICTED	XM_214861.3	XM_214861.3		292699	62639114	XM_214861.3	Cblc_predicted	XP_214861.3	ILMN_1373721	0001050324	S	1332	GTTCCATGCCCTCAGAGACCCCAAAACAAAGGCTGGCTGACACTGGCACC				1q21	PREDICTED: Rattus norvegicus Casitas B-lineage lymphoma c (predicted) (Cblc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656320-S	ILMN_60263	RGD1559450_PREDICTED	XM_573124.2	XM_573124.2		497937	109488383	XM_573124.2	RGD1559450_predicted	XP_573124.2	ILMN_2039812	0002900376	S	3829	TTGCGTGAGGCCGTGGAGGAAGCCAAGGTTGCCCGCAAAGGGGGCGGTTT	10	-	56624988-56625037	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ36878 (predicted) (RGD1559450_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718310-S	ILMN_268393	LOC688758	XM_001068185.1	XM_001068185.1		688758	109513265	XM_001068185.1	LOC688758	XP_001068185.1	ILMN_1366927	0000110672	S	1182	CTCAGAAAGTACAAGAGAGTTGGAATTGGACACACACCAGGAAGAGAGCT	Un|NW_047874.1	-	832481-832530		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5031410I06 (LOC688758), mRNA.					
Rattus norvegicus	RefSeq	GI_57012443-A	ILMN_263446	MRPS10	NM_001008859.1	NM_001008859.1		363187	57012443	NM_001008859.1	Mrps10	NP_001008859.1	ILMN_1376421	0002350671	S	185	GCCGTGCTCGCTGCTAAAGAACTTGGCCTTTCTATTAAAGTACACGAGCC	9	-	9076566-9076575:9077270-9077309	9q12	Rattus norvegicus mitochondrial ribosomal protein S10 (Mrps10), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes [goid 5761] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	Ac1179	Ac1179
Rattus norvegicus	RefSeq	GI_31341076-S	ILMN_297962	SPATS1	NM_181376.2	NM_181376.2		301255	31341076	NM_181376.2	Spats1	NP_852041.1	ILMN_1364497	0003120110	S	971	GCTGCAATCCAGAAGTGGGCTCTAAAGTCAGAAGGAATGGATGTGCTAGC	9	+	11162723-11162772	9q12	Rattus norvegicus spermatogenesis associated, serine-rich 1 (Spats1), mRNA.				Srsp1	Srsp1
Rattus norvegicus	RefSeq	GI_20806120-S	ILMN_269699	SYCN	NM_139086.1	NM_139086.1		245917	20806120	NM_139086.1	Sycn	NP_620786.1	ILMN_1359847	0006040528	S	143	CGTGCGCCAGGCTCTATGAGAACAGTGACCCCTACTATGACAACTGCTGC	1	+	83651399-83651448	1q21	Rattus norvegicus syncollin (Sycn), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis [goid 17158] [evidence TAS]		Syl	Syl
Rattus norvegicus	RefSeq	GI_31542340-S	ILMN_295394	CASP1	NM_012762.2	NM_012762.2		25166	31542340	NM_012762.2	Casp1	NP_036894.2	ILMN_1361826	0000450670	S	1125	CGAACAACCAGACTCTAGACTACAGATGCCAACCACTGAAAGGGTGACCC	8	+	2036201-2036250	8q11	Rattus norvegicus caspase 1 (Casp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 alpha from a cell or group of cells [goid 50717] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of interleukin-1 beta from a cell or group of cells [goid 50718] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]	Il1bc; Ice	Il1bc; Ice
Rattus norvegicus	RefSeq	GI_62666570-S	ILMN_298694	RGD1564569_PREDICTED	XR_007833.1	XR_007833.1		302522	109511509	XR_007833.1	RGD1564569_predicted		ILMN_1365181	0004230390	S	428	GGATGCCATGCAGCAGTTTGGGCACTGGAACTGTAAGACCAGGAAGAAGA				Xq13	PREDICTED: Rattus norvegicus similar to peptidylprolyl isomerase A (cyclophilin A)) (predicted) (RGD1564569_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655839-S	ILMN_264150	FAHD1	NM_001024991.1	NM_001024991.1		302980	68163416	NM_001024991.1	Fahd1	NP_001020162.1	ILMN_1368262	0003190242	S	1334	GCTGCAGTCCTGCCTTGTTTACTTTGTGTGTATGTGTTGGCTGTGCCTTC	10	-	14101680-14101729	10q12	Rattus norvegicus fumarylacetoacetate hydrolase domain containing 1 (Fahd1), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RGD1304560	RGD1304560
Rattus norvegicus	RefSeq	GI_57114279-S	ILMN_266917	V1RB7	NM_173112.2	NM_173112.2		286892	57114279	NM_173112.2	V1rb7	NP_775135.2	ILMN_1352459	0002190019	S	213	AGACATGTTTATGGCTCAGGGGATATGGGATATTACCACATGCAGGTCCC	4	-	124190615-124190664	4q34	Rattus norvegicus vomeronasal 1 receptor, B7 (V1rb7), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]	Vnr7; VN7; V1rb13	Vnr7; VN7; V1rb13
Rattus norvegicus	RefSeq	GI_62717892-S	ILMN_54178	LOC501247	XM_576666.1	XM_576666.1		501247	62717892	XM_576666.1	LOC501247	XP_576666.1	ILMN_1365583	0005080064	S	654	CAGAGCCAAGCAACAGCAGGTAGGGTTAGGGCTCAGGGTCAGGTTGTCCT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001E04 (LOC501247), mRNA.					
Rattus norvegicus	RefSeq	GI_62661619-S	ILMN_52312	LOC498533	XM_573803.1	XM_573803.1		498533	62661619	XM_573803.1	LOC498533	XP_573803.1	ILMN_1352970	0006040722	S	509	ATCGCCTGGCTCAGAAAGGAACTGGTGAGTGACTGCCCGCCAAGAGGCCA				15p12	PREDICTED: Rattus norvegicus similar to Hypothetical protein A030013D21 (LOC498533), mRNA.					
Rattus norvegicus	RefSeq	GI_62667275-S	ILMN_296006	LOC363498	XM_001053773.1	XM_001053773.1		363498	109512356	XM_001053773.1	LOC363498	XP_001053773.1	ILMN_1358025	0007100079	S	128	TGCCTTTTGAAGCTGGAGAATACTACGTGCCTAGAGGAAGTCGCAGGCGG				Xq35	PREDICTED: Rattus norvegicus similar to brain expressed X-linked protein 2 (LOC363498), mRNA.					
Rattus norvegicus	RefSeq	GI_47576518-S	ILMN_284115	OLR1626	NM_001000090.1	NM_001000090.1		290002	47576518	NM_001000090.1	Olr1626	NP_001000090.1	ILMN_1355239	0000770168	S	696	CATGGCCAAGGCCCGATCCACCCTAACCGCTCACATCACTGTAGTCATAC	15	-	26460681-26460730	15p14	Rattus norvegicus olfactory receptor 1626 (Olr1626), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	ratchr15-26477126-26476155_ORF; Olr1626	ratchr15-26477126-26476155_ORF; Olr1626
Rattus norvegicus	RefSeq	GI_62638950-S	ILMN_52085	LOC361510	XM_341791.2	XM_341791.2		361510	62638950	XM_341791.2	LOC361510	XP_341792.2	ILMN_1355671	0004010338	S	427	CTGGAGTAAGATCACCCTGGAGAAGAAACCAGACTTGCTGGGAACTTACG				1q21	PREDICTED: Rattus norvegicus similar to Alcohol sulfotransferase (Hydroxysteroid sulfotransferase) (ST) (ST-60) (LOC361510), mRNA.					
Rattus norvegicus	RefSeq	GI_62651182-I	ILMN_50991	ASB2_PREDICTED	XM_576093.1	XM_576093.1		299266	62651182	XM_576093.1	Asb2_predicted	XP_576093.1	ILMN_1376132	0004060136	S	9	CATCCCTGGTCATGCGGTGGGCCCGAAATAAACTCCCTGCTTCAAAGGAG				6q32	PREDICTED: Rattus norvegicus ankyrin repeat and SOCS box-containing protein 2 (predicted) (Asb2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58219501-S	ILMN_267757	THRSP	NM_012703.2	NM_012703.2		25357	58219501	NM_012703.2	Thrsp	NP_036835.2	ILMN_1368643	0003170373	S	947	GACCCCCAACCCCAGGAAAAGGTTGAGGTAGTTGAGTGTGTGGGATGAGC	1	-	154647576-154647625	1q32	Rattus norvegicus thyroid hormone responsive (Thrsp), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	SPOT14; Lpgp	SPOT14; Lpgp
Rattus norvegicus	RefSeq	GI_62666137-S	ILMN_60028	LOC499460	XM_574784.1	XM_574784.1		499460	62666137	XM_574784.1	LOC499460	XP_574784.1	ILMN_1365103	0002030184	S	1322	GAAGATAGATAAACCCTTAGCCAGACTAATGAGATGACACAGAGAGTGTG					PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC499460), mRNA.					
Rattus norvegicus	RefSeq	GI_62666511-S	ILMN_294624	UTX_PREDICTED	XM_001055391.1	XM_001055391.1		317178	109511467	XM_001055391.1	Utx_predicted	XP_001055391.1	ILMN_1361480	0003870341	S	3251	CTGCTTCTAGTTAGCCACAGACCCAGTCCTCAGATCATACCATCAGTGTC				Xq12	PREDICTED: Rattus norvegicus ubiquitously transcribed tetratricopeptide repeat gene, X chromosome (predicted) (Utx_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652881-S	ILMN_68818	RGD1306041_PREDICTED	XM_235549.4	XM_235549.4		300125	109481136	XM_235549.4	RGD1306041_predicted	XP_235549.4	ILMN_1355369	0000670592	S	1335	GCTGATTCATGCGGCCCTCACCTGCACCTCCAGCGTCCATAAGAATGTGG	7	+	123856291-123856340	7q34	PREDICTED: Rattus norvegicus similar to FLJ20699 protein (predicted) (RGD1306041_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662241-S	ILMN_57613	RGD1563190_PREDICTED	XM_344485.3	XM_344485.3		364513	109503082	XM_344485.3	RGD1563190_predicted	XP_344486.3	ILMN_1352937	0001940168	S	1769	AGATGTGCCCACCTCCCAAACAGGAGGGCTACGCTTTCAAGTCCCCACAG	16	+	9705261-9705310	16p16	PREDICTED: Rattus norvegicus similar to hypothetical protein 4933430J11 (predicted) (RGD1563190_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645944-S	ILMN_266749	FLRT3_PREDICTED	XM_001080226.1	XM_001080226.1		366205	109470769	XM_001080226.1	Flrt3_predicted	XP_001080226.1	ILMN_1350369	0003140440	S	2412	CACACTCATGATGCGAGGAGGTCCCACACCAGACTCTTCCTGGGTTTTTT				3q41	PREDICTED: Rattus norvegicus fibronectin leucine rich transmembrane protein 3 (predicted) (Flrt3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50054307-S	ILMN_287360	CARHSP1	NM_152790.2	NM_152790.2		260416	50054307	NM_152790.2	Carhsp1	NP_690003.1	ILMN_1363966	0004780324	S	2842	CAGCCTGTAGACTTATTCTGGAACTGCAGAGTGTTGGGGAAGACCCCCTC	10	+	6999990-7000039	10q12	Rattus norvegicus calcium regulated heat stable protein 1 (Carhsp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence NAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Crhsp-24; Crhsp24	Crhsp-24; Crhsp24
Rattus norvegicus	RefSeq	GI_62650042-S	ILMN_60616	RGD1560626_PREDICTED	XM_580087.2	XM_580087.2		500588	109475851	XM_580087.2	RGD1560626_predicted	XP_580087.1	ILMN_1357335	0005270309	S	656	ACTGAGTCTGCCCCAGCAGCACCCGCCACATACCGTCAAGCATCTCAGAA	5	+	166565445-166565494	5q36	PREDICTED: Rattus norvegicus RGD1560626 (predicted) (RGD1560626_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21902526-S	ILMN_284524	CDK5RAP1	NM_145721.1	NM_145721.1		252827	21902526	NM_145721.1	Cdk5rap1	NP_663773.1	ILMN_1368983	0000510041	S	2498	GGTCTCCAACTAATAATCCTCCTGTCGCAGCCTTCTGAGGAGCTAGAGTC	3	-	144636807-144636856	3q41	Rattus norvegicus CDK5 regulatory subunit associated protein 1 (Cdk5rap1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence TAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence NAS]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of CDK activity [goid 45736] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein kinase activity [goid 45859] [evidence TAS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 19887] [evidence TAS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IMP]; Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_60223060-S	ILMN_301117	TERF1	NM_001012464.1	NM_001012464.1		297758	60223060	NM_001012464.1	Terf1	NP_001012482.1	ILMN_1367102	0004120279	S	1717	TACTACTAGAGGGGTATGCAAAACGACCCATGAGTTCTAACAAGCCTGGC	5	-	2557173-2557222	5q11	Rattus norvegicus telomeric repeat binding factor (NIMA-interacting) 1 (Terf1), mRNA.	The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins [goid 781] [evidence IEA]; The terminal region of a linear chromosome in the nucleus that includes the telomeric DNA repeats and associated proteins [goid 784] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The maintenace of proper telomeric length by the addition of telomeric repeats by telomerase [goid 7004] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded telomere-associated DNA [goid 3691] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with telomere-associated DNA, usually characterized by highly repetitive sequences [goid 42162] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC109063	MGC109063
Rattus norvegicus	RefSeq	GI_62654555-S	ILMN_63046	FYCO1_PREDICTED	XM_236739.4	XM_236739.4		301085	109484138	XM_236739.4	Fyco1_predicted	XP_236739.4	ILMN_1357634	0001770403	S	4270	CCCAAGAGCATCTCCTTCAGTGTGGTCTTCCAAGAGACAGAAGACACGCC	8	-	128551756-128551805	8q32	PREDICTED: Rattus norvegicus FYVE and coiled-coil domain containing 1 (predicted) (Fyco1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655478-S	ILMN_49452	LOC501196	XM_576624.1	XM_576624.1		501196	62655478	XM_576624.1	LOC501196	XP_576624.1	ILMN_1351475	0000730731	S	1899	AGCGAGCTTTAAACGGACACTATGGGAATTGGGAAGAGGGGACGAGGCAC				9q36	PREDICTED: Rattus norvegicus similar to 2610034M16Rik protein (LOC501196), mRNA.					
Rattus norvegicus	RefSeq	GI_13027451-S	ILMN_298859	SIX3	NM_023990.1	NM_023990.1		78974	13027451	NM_023990.1	Six3	NP_076480.1	ILMN_1366944	0004590050	S	1320	CGCGGACACTGGCACTTCTATCCTCTCGGTAACCTCCAGCGACTCGGAAT				6q12	Rattus norvegicus SIX homeobox 3 (Six3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process whose specific outcome is the progression of the diencephalon over time, from its formation to the mature structure. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex [goid 21536] [evidence ISS]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence ISS]; The creation of specific areas of progenitor domains along the anterior-posterior axis of the developing forebrain [goid 21797] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of Wnt receptor signaling pathway activity [goid 30178] [evidence ISS]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence IEA]; The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 43010] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Signaling at short range between the head ectoderm and the optic vesicle that results in the head ectoderm forming a lens [goid 60235] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62663937-S	ILMN_271474	NEBL_PREDICTED	XM_001068639.1	XM_001068639.1		307189	109506128	XM_001068639.1	Nebl_predicted	XP_001068639.1	ILMN_2038858	0004250484	S	2644	CGCTCACACTCTGGCAGCACTTTTGGTACGGGTCTGGGAGATGACAAGTC				17q12.3	PREDICTED: Rattus norvegicus nebulette (predicted) (Nebl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576242-S	ILMN_266786	OLR1314	NM_001000468.1	NM_001000468.1		300615	47576242	NM_001000468.1	Olr1314	NP_001000468.1	ILMN_1364909	0005570154	S	495	CTACTGTGGTCCCAATCATGTCCACCATTTTTTCTGTGACATTCCCGCAG	8	-	42579255-42579304	8q22	Rattus norvegicus olfactory receptor 1314 (Olr1314), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1314	Olr1314
Rattus norvegicus	RefSeq	GI_62660200-S	ILMN_53861	CCNI_PREDICTED	XM_214007.4	XM_214007.4		289500	109499522	XM_214007.4	Ccni_predicted	XP_214007.2	ILMN_1355251	0002630711	S	2708	GATTGGCTTCTGGACCCTGAGCTCCCTTTGCAGTCTGAAGATGGCACTGC	14	+	16460023-16460072	14p22	PREDICTED: Rattus norvegicus cyclin I (predicted) (Ccni_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642642-S	ILMN_266269	ELL2	XM_001054852.1	XM_001054852.1		309918	109465756	XM_001054852.1	Ell2	XP_001054852.1	ILMN_1363228	0004010398	S	4030	TTCAGGTTGTCTTGCACCGTTTCAAAGTGCTGCCAGTTGAAAAGGGAAGC				2q11	PREDICTED: Rattus norvegicus elongation factor RNA polymerase II 2 (Ell2), mRNA.					
Rattus norvegicus	RefSeq	GI_62666564-S	ILMN_59935	LOC503427	XM_578967.1	XM_578967.1		503427	62666564	XM_578967.1	LOC503427	XP_578967.1	ILMN_1361491	0001570066	S	786	CTTGTTTACCAAGAACCCATTTCCATAGCCCAGCTGAATGAGGGCGAACC					PREDICTED: Rattus norvegicus similar to Proteasome subunit alpha type 2 (Proteasome component C3) (Macropain subunit C3) (Multicatalytic endopeptidase complex subunit C3) (LOC503427), mRNA.					
Rattus norvegicus	RefSeq	GI_34858174-S	ILMN_51526	RGD1560208_PREDICTED	XM_227370.3	XM_227370.3		295189	109465159	XM_227370.3	RGD1560208_predicted	XP_227370.2	ILMN_1349768	0005570288	S	246	CCTACGAGCCACTTCTCAGCAACACCAGAAAGTAGAGGAGAATTATGGGC	2	-	186481648-186481697	2q34	PREDICTED: Rattus norvegicus similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (predicted) (RGD1560208_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560021-S	ILMN_291507	UGT2A1	NM_022228.1	NM_022228.1		63867	11560021	NM_022228.1	Ugt2a1	NP_071564.1	ILMN_1362873	0001050402	S	1215	GGCTAAAGGAGCAGCTGTGGAGGTGAACATGAACACGATGACGAGTGCAG	14	+	22069313-22069362	14p21	Rattus norvegicus UDP glucuronosyltransferase 2 family, polypeptide A1 (Ugt2a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IDA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence TAS]; Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA]	Ugt2a1p	Ugt2a1p
Rattus norvegicus	RefSeq	GI_62656442-S	ILMN_296582	RGD1564012_PREDICTED	XR_009591.1	XR_009591.1		501700	109490968	XR_009591.1	RGD1564012_predicted		ILMN_2040367	0004830152	S	377	CAGCCTCAAGTTCCGGAGGAAGGACATCAGGAAATCTATCGAAGGGGGCC				10q23	PREDICTED: Rattus norvegicus similar to EDF-1 protein (predicted) (RGD1564012_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663524-I	ILMN_60021	GCNT2	XM_577565.1	XM_577565.1		306860	62663524	XM_577565.1	Gcnt2	XP_577565.1	ILMN_1376220	0003940750	S	661	CTCACGCGGTGGGAAGGACCAAGTATGTTCACCGGGAGCTGTTAGACCTT				17p12	PREDICTED: Rattus norvegicus glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643792-S	ILMN_65225	RGD1561797_PREDICTED	XM_579997.2	XM_579997.2		499655	109465087	XM_579997.2	RGD1561797_predicted	XP_579997.2	ILMN_1350177	0004780427	S	600	TCTGGAGTTGAGCCACCAATGCCACAGCCCTGTCAGATGAGTGTGACCTC	2	-	181612775-181612824	2q34	PREDICTED: Rattus norvegicus RGD1561797 (predicted) (RGD1561797_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718520-S	ILMN_65765	LOC363393	XM_347133.2	XM_347133.2		363393	62718520	XM_347133.2	LOC363393	XP_347134.2	ILMN_1349385	0002940041	S	1103	TGGGACTCAGGTGTAGGCAGGCATAGTTTACAAGATTTATGCAGGAGGAG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC363393), mRNA.					
Rattus norvegicus	RefSeq	GI_62638774-S	ILMN_66101	LOC360303	XM_346531.2	XM_346531.2		360303	62638774	XM_346531.2	LOC360303	XP_346532.1	ILMN_1360715	0007040180	S	1096	ACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTAGCTCTCTGA					PREDICTED: Rattus norvegicus hypothetical LOC360303 (LOC360303), mRNA.					
Rattus norvegicus	RefSeq	GI_62652181	ILMN_56307	LOC366899	XM_345826.2	XM_345826.2		366899	62652181	XM_345826.2	LOC366899	XP_345827.2	ILMN_1649877	0004560711	S	561	GAGCTCCCTGGGTGGAGGTGATGCTTTCAGCGTGTTTAGGCCTCCAGACT					PREDICTED: Rattus norvegicus similar to hypothetical protein MG04262.4 (LOC366899), mRNA.					
Rattus norvegicus	RefSeq	GI_62663251-S	ILMN_271472	RGD1561563_PREDICTED	XM_001066615.1	XM_001066615.1		502113	109505406	XM_001066615.1	RGD1561563_predicted	XP_001066615.1	ILMN_1352099	0005130725	S	3655	GGGCAGACAGCCCTTGAGAGGTGCGGCACTACTGGAAAAGCTAAGATGGT				17p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700013B16 (predicted) (RGD1561563_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645693-S	ILMN_263441	RGD1562705_PREDICTED	XM_001081011.1	XM_001081011.1		362205	109470737	XM_001081011.1	RGD1562705_predicted	XP_001081011.1	ILMN_1362108	0004230026	S	1323	AAGGGGAGGGAATCATGGGCCTTGGAATAAAGGGGCTGTGTGGAGCTGGG				3q35	PREDICTED: Rattus norvegicus similar to Shb-like adapter protein, Shf - human (predicted) (RGD1562705_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654401-S	ILMN_55106	UBP1_PREDICTED	XM_238562.4	XM_238562.4		301038	109484030	XM_238562.4	Ubp1_predicted	XP_238562.4	ILMN_1360122	0006130450	S	1871	TTAGGCCCCGCTTAACCATCTATGTCTGCCAGGAGCAGCCGAGCAGTGCT	8	+	118613230-118613279	8q32	PREDICTED: Rattus norvegicus upstream binding protein 1 (predicted) (Ubp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705466-S	ILMN_278570	CYP2T1	NM_134369.1	NM_134369.1		171380	19705466	NM_134369.1	Cyp2t1	NP_599196.1	ILMN_1350655	0006200110	S	1466	AGCCTTCCAGCTCCGCTTGGTGGCCCGCTGAGGTTGGGCTTCAGTATTCT	1	+	82233108-82233144:82233145-82233157	1q21	Rattus norvegicus cytochrome P450 monooxygenase CYP2T1 (Cyp2t1), mRNA.		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19705538-S	ILMN_278482	LPHN2	NM_134408.1	NM_134408.1		171447	19705538	NM_134408.1	Lphn2	NP_599235.1	ILMN_1367511	0005220253	S	5498	CTCTGTTTATTCTGGAACAGAGGGCGAAGGGGTCACTGGGCACTTCTCAC	2	-	247060691-247060740	2q45	Rattus norvegicus latrophilin 2 (Lphn2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Cirl2; Cl2ac; Cirl-2	Cirl2; Cl2ac; Cirl-2
Rattus norvegicus	RefSeq	GI_27711245-S	ILMN_293502	LOC688712	XM_001068022.1	XM_001068022.1		688712	109507955	XM_001068022.1	LOC688712	XP_001068022.1	ILMN_1369573	0003120040	S	298	TGTGATTGGCTTCATGTGGTCGCATCTGACAAGGAGACTTACGAACTTCA	19	-	27159577-27159626	19q11	PREDICTED: Rattus norvegicus similar to ribosomal protein L22 like 1 (LOC688712), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656287-S	ILMN_263993	HES7_PREDICTED	XM_001079254.1	XM_001079254.1		287423	109491077	XM_001079254.1	Hes7_predicted	XP_001079254.1	ILMN_1366017	0000050020	S	341	TGCTACTTGTCCGGCTTCCGCGAGTGCCTGCTTCGCTTGGCGGCCTTTGC				10q24	PREDICTED: Rattus norvegicus hairy and enhancer of split 7 (Drosophila) (predicted) (Hes7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40786444-S	ILMN_276203	WRB	NM_199373.1	NM_199373.1		288233	40786444	NM_199373.1	Wrb	NP_955405.1	ILMN_1354764	0006380463	S	2082	TGCAGTCTGAGGTGGTGCTTTTTGCCCATGTCATTTAGGTAGCCAGGGTC	11	+	36466893-36466942	11q11	Rattus norvegicus tryptophan rich basic protein (Wrb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62652372	ILMN_65941	PKHD1L1_PREDICTED	XM_235248.3	XM_235248.3		314917	62652372	XM_235248.3	Pkhd1l1_predicted	XP_235248.3	ILMN_1650103	0006980048	S	12679	GATTTGGCAGCAGATACTCCAGCTCCAGGGCCCATCAAAGCAGAGACTCC					PREDICTED: Rattus norvegicus polycystic kidney and hepatic disease 1-like 1 (predicted) (Pkhd1l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_22129750-S	ILMN_295550	DCLRE1C	NM_147145.1	NM_147145.1		259171	22129750	NM_147145.1	Dclre1c	NP_671486.1	ILMN_1366473	0002230132	S	1965	CACCTGAGAAAACATCGCTAACCAGCACACAGGCAGACTCACAGAGCTCC	17	-	85896736-85896785	17q12.3	Rattus norvegicus DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) (Dclre1c), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences [goid 723] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence ISS]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; A process that is carried out at the cellular level that results in the formation, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information [goid 51276] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Snm1l	Snm1l
Rattus norvegicus	RefSeq	GI_56676321-S	ILMN_59864	GIMAP9	NM_001008398.2	NM_001008398.2		493865	76677900	NM_001008398.2	Gimap9	NP_001008399.1	ILMN_1365989	0002120739	S	617	GCAGCTGATAGATCTGATAGAGGAAATGGTGGCCAGGAACGGCAGAGCCT	4	+	76767305-76767354	4q24	Rattus norvegicus GTPase, IMAP family member 9 (Gimap9), mRNA.			Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC124918; GIMAP9	MGC124918; GIMAP9
Rattus norvegicus	RefSeq	GI_11612667-S	ILMN_284296	FXYD6	NM_022005.1	NM_022005.1		63847	11612667	NM_022005.1	Fxyd6	NP_071288.1	ILMN_1365784	0000110673	S	1546	CGCCTACGGGAGTCAAAGGTCACCAGAGTGGAAACTCACACCAGAGCCTG				8q22	Rattus norvegicus FXYD domain-containing ion transport regulator 6 (Fxyd6), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]	Php	Php
Rattus norvegicus	RefSeq	GI_57527465-S	ILMN_297992	DCUN1D5	NM_001009696.1	NM_001009696.1		315405	57527465	NM_001009696.1	Dcun1d5	NP_001009696.1	ILMN_1354827	0001580181	S	882	CGATGAAGACGGCGCTTGGCCTGTTCTTCTTGATGAGTTTGTTGAGTGGC	8	+	4092452-4092468:4093842-4093874	8q11	Rattus norvegicus DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) (Dcun1d5), mRNA.				MGC105763; RGD1307008	MGC105763; RGD1307008
Rattus norvegicus	RefSeq	GI_62078474-S	ILMN_294258	TRMT1	NM_001013870.1	NM_001013870.1		288914	62078474	NM_001013870.1	Trmt1	NP_001013892.1	ILMN_1361236	0000110500	S	2250	CGCGCCGCTCGCCTCAAGACATTCCCCTGCAAACGATTCAAAGAGGGTAC	19	-	25120042-25120047:25120164-25120207	19q11	Rattus norvegicus TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) (Trmt1), mRNA.		The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine [goid 4809] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RGD1305992	RGD1305992
Rattus norvegicus	RefSeq	GI_62718707	ILMN_55275	LOC503400	XM_578938.1	XM_578938.1		503400	62718707	XM_578938.1	LOC503400	XP_578938.1	ILMN_1651064	0001980064	S	1	ATGTCTTCTGGGTTTGAAGAACAGGTGGACTGTGACGAGTTGGTAGCCAG					PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503400), mRNA.					
Rattus norvegicus	RefSeq	GI_62641821-S	ILMN_60232	RGD1565838_PREDICTED	XM_342008.3	XM_342008.3		361718	109459805	XM_342008.3	RGD1565838_predicted	XP_342009.3	ILMN_1355547	0002340458	S	931	GGCGGGCACTGTGGTGGCTGTTGCCACTGAACTCCTAGAACCACTTGCAA	1	-	209899311-209899331:209899332-209899360	1q43	PREDICTED: Rattus norvegicus similar to 4931433E08Rik protein (predicted) (RGD1565838_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40385880-S	ILMN_276734	ACVR1B	NM_199230.1	NM_199230.1		29381	40385880	NM_199230.1	Acvr1b	NP_954700.1	ILMN_1365650	0006370364	S	1926	CTGAGAGGAACCGGAAGTGTCCTCCCTTTTACCTGTGGGCAGTCCTGAGC	7	+	139958477-139958526	7q36	Rattus norvegicus activin A receptor, type IB (Acvr1b), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed [goid 48179] [evidence IMP]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32927] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32927] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence TAS];  [goid 4702] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence TAS]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence IMP]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IMP]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IEA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]	Skr2	Skr2
Rattus norvegicus	RefSeq	GI_62645197-S	ILMN_287599	RGD1565767_PREDICTED	XM_001059981.1	XM_001059981.1		311120	109470066	XM_001059981.1	RGD1565767_predicted	XP_001059981.1	ILMN_1358698	0003990671	S	585	CCACACTGTTGGTGGATCTCGCCGTGCAGCCTGGAGAAAGCACATTACTC				3q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L15 (predicted) (RGD1565767_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658865-S	ILMN_52306	BCL7A_PREDICTED	XM_341081.2	XM_341081.2		360809	62658865	XM_341081.2	Bcl7a_predicted	XP_341082.2	ILMN_1367753	0001570609	S	2228	CCGTAGGGAACAGCATGGGGGACAGTTCAGAGTGACAGTGTGGTTTGGGC					PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 7A (predicted) (Bcl7a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646507-S	ILMN_293575	LOC682097	XM_001059846.1	XM_001059846.1		682097	109471528	XM_001059846.1	LOC682097	XP_001059846.1	ILMN_1363674	0004670164	S	2127	CACGCTCAAGCTGCCGTGGTTAAGTGCCCCACCAGCTCCAGAGAACAACA					PREDICTED: Rattus norvegicus similar to TBP-associated factor 4 (LOC682097), mRNA.	A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence IEA]	Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IEA]	 [goid 16986] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718477-S	ILMN_292846	CBX8	NM_001034078.1	NM_001034078.1		303731	77539761	NM_001034078.1	Cbx8	NP_001029250.1	ILMN_1355830	0002650176	S	1167	CGGCTTAGTGCTTTTTATCTCTGGGTGACTGTGGCCTCTGGCTGGTCCTG	Un|NW_047902.1	-	80674-80723		Rattus norvegicus chromobox homolog 8 (Pc class homolog, Drosophila) (Cbx8), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence ISS]	The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116381	MGC116381
Rattus norvegicus	RefSeq	GI_62655877-S	ILMN_296266	RGD1561732_PREDICTED	XM_001060231.1	XM_001060231.1		363554	109490383	XM_001060231.1	RGD1561732_predicted	XP_001060231.1	ILMN_1363123	0000520097	S	1732	CCCTATGTGACCAACAGGCCCCCCAACACTGCCTACCCACCATCCAGTTT				10q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4732467B22 (predicted) (RGD1561732_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655097-I	ILMN_65515	ORC2L_PREDICTED	XM_576571.1	XM_576571.1		301430	62655097	XM_576571.1	Orc2l_predicted	XP_576571.1	ILMN_1375593	0006900341	S	3282	GGGCTGGGGACCAAACTCAGGTCTTCTCACCCACATCACAACACAGCTCC				9q31	PREDICTED: Rattus norvegicus origin recognition complex, subunit 2-like (S. cerevisiae) (predicted) (Orc2l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641105-S	ILMN_69757	RGD1564933_PREDICTED	XM_574531.2	XM_574531.2		499238	109459211	XM_574531.2	RGD1564933_predicted	XP_574531.2	ILMN_1351348	0002340050	S	450	ATACCTAGGATGTGGCATCCAGCTTGGCTCGGGTGCTTTCTTTGGAACAG	1	-	166122357-166122406	1q33	PREDICTED: Rattus norvegicus similar to olfactory receptor Olr271 (predicted) (RGD1564933_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649643-S	ILMN_268142	EIF2C3_PREDICTED	XM_001058231.1	XM_001058231.1		313593	109477238	XM_001058231.1	Eif2c3_predicted	XP_001058231.1	ILMN_1365820	0002370593	S	3562	CCCCATGCGCACTGTGTTCAGCATAGTGGTGACCCAGGGTTCTTCCTGTA				5q36	PREDICTED: Rattus norvegicus eukaryotic translation initiation factor 2C, 3 (predicted) (Eif2c3_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.9137	ILMN_263907	ZNF541_PREDICTED	XM_001074162.1	XM_001074162.1		308108	109461290	XM_001074162.1	Znf541_predicted	XP_001074162.1	ILMN_1530415	0007050138	S	3578	AGACTAAAAGTGTAGCACAGTGTGTTGAGTACTACTACATCTGGAAAAAA				1q21	PREDICTED: Rattus norvegicus zinc finger protein 541 (predicted) (Znf541_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638960-S	ILMN_263907	ZNF541_PREDICTED	XM_001074162.1	XM_001074162.1		308108	109461290	XM_001074162.1	Znf541_predicted	XP_001074162.1	ILMN_1351022	0005570215	S	3853	AGTGTGGAGAGCCAGGGCGTGTTCCCTTGCAGAGAGTGTGAGAGGGTGTT				1q21	PREDICTED: Rattus norvegicus zinc finger protein 541 (predicted) (Znf541_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648868-S	ILMN_273766	RGD1307723_PREDICTED	XM_001068422.1	XM_001068422.1		313170	109476370	XM_001068422.1	RGD1307723_predicted	XP_001068422.1	ILMN_1358208	0003990603	S	4014	GCTGGATGAGATGGCTGAGCTGGACTTCAAGGAGGAGACCTTAATGACCC				5q22	PREDICTED: Rattus norvegicus similar to CG1453-PA (predicted) (RGD1307723_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641968-S	ILMN_269661	TPCN2_PREDICTED	XM_001067197.1	XM_001067197.1		309139	109463283	XM_001067197.1	Tpcn2_predicted	XP_001067197.1	ILMN_1353973	0006900736	S	1941	GCACTACTCCGGCCCGTGGTCGATGGTGTATTTTGTGCTGTGGTGGTTGG				1q42	PREDICTED: Rattus norvegicus two pore segment channel 2 (predicted) (Tpcn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661824-S	ILMN_278536	RGD1564706_PREDICTED	XM_001077027.1	XM_001077027.1		361088	109502912	XM_001077027.1	RGD1564706_predicted	XP_001077027.1	ILMN_1364393	0006380575	S	2227	TACAGAGCAGCCTCTCCAACGCCAGCCCATCCAAGGCCACCAAAAGCTGA				15q22	PREDICTED: Rattus norvegicus similar to chromosome 13 open reading frame 7 (predicted) (RGD1564706_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658786-S	ILMN_281261	RSAFD1_PREDICTED	XM_001078133.1	XM_001078133.1		304423	109497238	XM_001078133.1	Rsafd1_predicted	XP_001078133.1	ILMN_1358290	0006770102	S	2364	TGCTGCCCACACAGCACCCATACACAGGGCTGGGGACTCCATGCTTCTTA				12q13	PREDICTED: Rattus norvegicus radical S-adenosyl methionine and flavodoxin domains 1 (predicted) (Rsafd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645541-S	ILMN_276168	RGD1310905_PREDICTED	XM_001074437.1	XM_001074437.1		296049	109470409	XM_001074437.1	RGD1310905_predicted	XP_001074437.1	ILMN_1365924	0007050605	S	322	AGCGCTGCTGGGACATCGCCCTGGGTCCCCTCAAACAGATTCCCATGAAT				3q34	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610318K02 (predicted) (RGD1310905_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078530-S	ILMN_284845	LOC293103	NM_001013897.1	NM_001013897.1		293103	62078530	NM_001013897.1	LOC293103	NP_001013919.1	ILMN_1352305	0002450377	S	624	GCAGTGCCGCTGTGTCCTCGGTTGACTCCTTCACACAGTTCACACAGAAG	1	-	146523594-146523606:146526988-146527024	1q32	Rattus norvegicus similar to RIKEN cDNA 0610007P06 (LOC293103), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]		l7Rn6	l7Rn6
Rattus norvegicus	RefSeq	GI_34871277-S	ILMN_272847	RGD1560464_PREDICTED	XM_001070294.1	XM_001070294.1		363584	109490608	XM_001070294.1	RGD1560464_predicted	XP_001070294.1	ILMN_1366484	0006770338	S	921	AGGGCTCCAGACAGGGAAGGACCGTCAAATGAAATTGAACCACCACCCCC				10q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38426 (predicted) (RGD1560464_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21717798-S	ILMN_265870	XRCC6	NM_139080.1	NM_139080.1		25019	21717798	NM_139080.1	Xrcc6	NP_620780.1	ILMN_1349513	0006420494	S	1795	TGCCTGCACTGAGGGACATCTGCAAGGCCTATGGGCTAAAGAGTGGACCG	7	+	120422671-120422720	7q34	Rattus norvegicus X-ray repair complementing defective repair in Chinese hamster cells 6 (Xrcc6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A large protein complex which is involved in the repair of DNA double-strand breaks and V(D)J recombination events. In mammals, it consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer, Ku, the nuclear phosphoprotein XRCC4 and DNA ligase IV [goid 5958] [evidence IEA]	The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence TAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence IEA]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence ISS]; The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of the DNA helix [goid 4003] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Kup70; Ku70; G22p1	Kup70; Ku70; G22p1
Rattus norvegicus	RefSeq	GI_62661380-S	ILMN_61638	LOC498500	XM_573764.1	XM_573764.1		498500	62661380	XM_573764.1	LOC498500	XP_573764.1	ILMN_1358149	0001780195	S	163	GCGCTCCTCCCAGTGCTGGGGATAAACTTTCTTCTGAGAGATGGCCAAGC				15p14	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A430107P09 gene (LOC498500), mRNA.					
Rattus norvegicus	RefSeq	GI_62643543-S	ILMN_52611	LOC499633	XM_574956.1	XM_574956.1		499633	62643543	XM_574956.1	LOC499633	XP_574956.1	ILMN_1352850	0005550364	S	989	AACTGGCCATTTGGAGAAAGGGCTCCCTGTCACTGGCCTCTCGGTCACTA					PREDICTED: Rattus norvegicus similar to hypothetical protein D230050A05 (LOC499633), mRNA.					
Rattus norvegicus	RefSeq	GI_62650069-S	ILMN_268622	LOC500591	XM_001076183.1	XM_001076183.1		500591	109477735	XM_001076183.1	LOC500591	XP_001076183.1	ILMN_1362156	0002510039	S	842	GAGCGGGCAGCAGCGTGCATCATAAGTGTAACAGTGCCAAACACCGCATC				5q36	PREDICTED: Rattus norvegicus similar to calmodulin-binding transcription activator 1 (LOC500591), mRNA.					
Rattus norvegicus	RefSeq	GI_62653302-S	ILMN_270821	ANGPTL6_PREDICTED	XM_001077150.1	XM_001077150.1		298698	109484351	XM_001077150.1	Angptl6_predicted	XP_001077150.1	ILMN_1357251	0005270142	S	1106	GCACGCGCCCACTATGACAGCTTCTCCTTGGAACCCGAGAGTGACCACTA				8q13	PREDICTED: Rattus norvegicus angiopoietin-like 6 (predicted) (Angptl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638318-I	ILMN_66298	HBS1L_PREDICTED	XM_574272.1	XM_574272.1		293408	62638318	XM_574272.1	Hbs1l_predicted	XP_574272.1	ILMN_1376163	0004560092	S	34	TGTCCTCTCACAAGCTCGATTGTAGACTTAGAGCATGTCCCGTTGTGGTT				1p12	PREDICTED: Rattus norvegicus Hbs1-like (S. cerevisiae) (predicted) (Hbs1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650000-S	ILMN_58586	LOC500582	XM_580086.1	XM_580086.1		500582	62650000	XM_580086.1	LOC500582	XP_580086.1	ILMN_1362752	0001500064	S	317	AAGAGCCCTGGACGGTAAAGGCCAAAGAGACTTCTAACAAAGGATCCAGG				5q36	PREDICTED: Rattus norvegicus LOC500582 (LOC500582), mRNA.					
Rattus norvegicus	RefSeq	GI_62664842-S	ILMN_263710	LARGE_PREDICTED	XM_001060350.1	XM_001060350.1		361368	109508396	XM_001060350.1	Large_predicted	XP_001060350.1	ILMN_1374560	0006770452	S	2276	GCCGATTTCGAGCCATACGTTGTTGTGAGGCGAGACTGCCCCGAGTACGA				19p12-p11	PREDICTED: Rattus norvegicus like-glycosyltransferase (predicted) (Large_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.24338	ILMN_263710	LARGE_PREDICTED	XM_001060350.1	XM_001060350.1		361368	109508396	XM_001060350.1	Large_predicted	XP_001060350.1	ILMN_1530304	0004480435	S	3371	GTCCATAGAAAATGTGACTTGCATATAGTGTTTGGCTTCATATTTCTGTA				19p12-p11	PREDICTED: Rattus norvegicus like-glycosyltransferase (predicted) (Large_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643586-S	ILMN_54795	LOC499642	XM_579994.1	XM_579994.1		499642	62643586	XM_579994.1	LOC499642	XP_579994.1	ILMN_1372993	0006520593	S	300	GTGCAATATGGGGCAGTCTTGCCTGGGCTCCTGTATTTGTTACAGCACAG					PREDICTED: Rattus norvegicus LOC499642 (LOC499642), mRNA.					
Rattus norvegicus	RefSeq	GI_62657848-S	ILMN_263184	RGD1310335_PREDICTED	XM_001064580.1	XM_001064580.1		360711	109494304	XM_001064580.1	RGD1310335_predicted	XP_001064580.1	ILMN_1360867	0001850341	S	2649	GGCTTCCTCCCTAGAAATGCAGAAAGCTCAATTAGAAGGTCGTTTGGAAG				11q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330027C09 (predicted) (RGD1310335_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21426808-S	ILMN_56617	ADIPOQ	NM_144744.2	NM_144744.2		246253	62990185	NM_144744.2	Adipoq	NP_653345.1	ILMN_1363454	0002690397	S	644	GAGACCAAGTCTGGCTCCAAGTGTATGGGGAAGGGGACAACAATGGACTC	11	-	79908513-79908562	11q23	Rattus norvegicus adiponectin, C1Q and collagen domain containing (Adipoq), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus [goid 9744] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence ISS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence NAS]; The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen [goid 19395] [evidence ISS]; A series of molecular signals generated as a consequence of adiponectin binding to a cell surface receptor [goid 33211] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of gluconeogenesis [goid 45721] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of gluconeogenesis [goid 45721] [evidence ISS]; The process by which the force of blood traveling through the circulatory system is increased [goid 45777] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 45923] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving fatty acids [goid 45923] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle [goid 46326] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IDA]; The process in which membrane potential changes in the hyperpolarizing direction from the resting potential, usually from negative to more negative [goid 60081] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Acrp30; Acdc	Acrp30; Acdc
Rattus norvegicus	RefSeq	GI_62657443-S	ILMN_64554	DNAHC11	XM_213534.4	XM_213534.4		287845	109489440	XM_213534.4	Dnahc11	XP_213534.4	ILMN_1355643	0006400068	S	13011	GTGGCCCCTGGATAAGATGTGCCTGTCTGTGGAGGTGACCAAGAAGACCC	10	-	108014837-108014886	10q32.3	PREDICTED: Rattus norvegicus beta heavy chain of outer-arm axonemal dynein ATPase (Dnahc11), mRNA.					
Rattus norvegicus	RefSeq	GI_62639438	ILMN_290652	ZFP84_PREDICTED	XM_001078745.1	XM_001078745.1		308482	109461609	XM_001078745.1	Zfp84_predicted	XP_001078745.1	ILMN_1650505	0002260575	S	2287	CGCAAGTTCTTCCGCCGGTACTCGGAGCTCATTTCCCACCAAGGCATCCA				1q21	PREDICTED: Rattus norvegicus zinc finger protein 84 (predicted) (Zfp84_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51948415-S	ILMN_285042	ARFIP2	NM_001004222.1	NM_001004222.1		293344	51948415	NM_001004222.1	Arfip2	NP_001004222.1	ILMN_1352668	0000780372	S	1475	CCCAGCTCTTGGGATGTGCCCCTGACCAAAGACAGGACCTCAAAAGGCTC	1	-	163365110-163365159	1q33	Rattus norvegicus ADP-ribosylation factor interacting protein 2 (Arfip2), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP [goid 30742] [evidence ISS]	POR; MGC94205	POR; MGC94205
Rattus norvegicus	RefSeq	GI_62646990-S	ILMN_68117	PLXNA4_PREDICTED	XM_231590.4	XM_231590.4		312213	109471835	XM_231590.4	Plxna4_predicted	XP_231590.3	ILMN_1368398	0006200372	S	7124	GATCTCCCTTTCCAACACACTCAACAATAAGAGGCCAGGCAGTGGGCCTG	4	-	59254167-59254216	4q22	PREDICTED: Rattus norvegicus plexin A4 (predicted) (Plxna4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649997-S	ILMN_264113	RGD1561789_PREDICTED	XM_001074676.1	XM_001074676.1		366500	109477681	XM_001074676.1	RGD1561789_predicted	XP_001074676.1	ILMN_1351306	0005050010	S	575	GAGAAGGGAACCATGCAGCAGCCTGACAAATGAGACCTCAGTTTCGTAGC				5q36	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (predicted) (RGD1561789_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641532-S	ILMN_67830	DOCK1_PREDICTED	XM_219421.3	XM_219421.3		309077	62641532	XM_219421.3	Dock1_predicted	XP_219421.3	ILMN_1357392	0004120121	S	2568	TCCCTCCTGGACCGAGAGACCTTTAGTCGTGAGTGTCAGCTTGGTCTATG					PREDICTED: Rattus norvegicus dedicator of cyto-kinesis 1 (predicted) (Dock1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664622-S	ILMN_51195	RGD1559803_PREDICTED	XM_341629.3	XM_341629.3		361348	109506785	XM_341629.3	RGD1559803_predicted	XP_341630.3	ILMN_1359583	0002100114	S	159	CACCCACCAGGTCAACCAGACCCAAGATTCCCTCCTAAGCCATTTGCAGG	18	+	70659074-70659123	18q12.2	PREDICTED: Rattus norvegicus similar to maestro (predicted) (RGD1559803_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653440-S	ILMN_276865	ADAMTS15_PREDICTED	XM_001055387.1	XM_001055387.1		300474	109484423	XM_001055387.1	Adamts15_predicted	XP_001055387.1	ILMN_1373794	0005570452	S	3170	CTAAGAGCTGTGGCCGTGGATTTAAGAGGCGTCCGCTCAAGTGTGTGGGC				8q13	PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15 (predicted) (Adamts15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638895-S	ILMN_294330	RDH13_PREDICTED	XM_001071011.1	XM_001071011.1		361504	109461172	XM_001071011.1	Rdh13_predicted	XP_001071011.1	ILMN_1365154	0002450441	S	1025	GGAAGTAGCCCGGAGGCTTTGGACTGAAAGTGCCCATTTGGTGGGCTTGG				1q12	PREDICTED: Rattus norvegicus retinol dehydrogenase 13 (all-trans and 9-cis) (predicted) (Rdh13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577386	ILMN_279464	OLR443	NM_001000285.1	NM_001000285.1		295715	47577386	NM_001000285.1	Olr443	NP_001000285.1	ILMN_1650126	0001050156	S	882	CACAGAGGTCAAAGGTGCATTTAGGAGAACTTTGCAGAAGAAGCACTTCC	3	+	68818622-68818671	3q24	Rattus norvegicus olfactory receptor 443 (Olr443), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr443	Olr443
Rattus norvegicus	RefSeq	GI_12018257-S	ILMN_296789	PDAP1	NM_022595.1	NM_022595.1		64527	12018257	NM_022595.1	Pdap1	NP_072117.1	ILMN_1350898	0002650324	S	894	CCATTTGTCCAGTAGATTGCACGTTAGTGTGGGGAGGGGGGTGTGGTGCC	12	+	9794644-9794693	12p11	Rattus norvegicus PDGFA associated protein 1 (Pdap1), mRNA.				Haspp28; PAP	Haspp28; PAP
Rattus norvegicus	RefSeq	GI_62661296-S	ILMN_51184	OLR1611_PREDICTED	XM_223954.4	XM_223954.4		290009	109501567	XM_223954.4	Olr1611_predicted	XP_223954.4	ILMN_1352990	0006100605	S	363	CCTCGGAGGAGGGGAATTTTTACTACTGGTTGTGATGGCCTTTGACCGCT	15	+	26020464-26020513	15p14	PREDICTED: Rattus norvegicus olfactory receptor 1611 (predicted) (Olr1611_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657691-S	ILMN_63055	LOC501751	XM_577151.1	XM_577151.1		501751	62657691	XM_577151.1	LOC501751	XP_577151.1	ILMN_1358680	0007000411	S	311	GTCACCCCCAGGATTTGTTGTACAGTGTGCTGGCAGTAAAGCTAAGATGG				11p12	PREDICTED: Rattus norvegicus similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A) (LOC501751), mRNA.					
Rattus norvegicus	RefSeq	GI_62642692-S	ILMN_56472	LOC365627	XM_345132.2	XM_345132.2		365627	62642692	XM_345132.2	LOC365627	XP_345133.1	ILMN_1352452	0002760372	S	1891	GAGCAAATGGCCTTCTTATCCTGATTCACAACACCTGTTCCTCTTCAGTA				2q11	PREDICTED: Rattus norvegicus similar to metallo-beta-lactamase superfamily protein like (XL884) (predicted) (LOC365627), mRNA.					
Rattus norvegicus	RefSeq	GI_62653675-S	ILMN_64979	LOC315664	XM_236273.3	XM_236273.3		315664	62653675	XM_236273.3	LOC315664	XP_236273.3	ILMN_1358442	0005290372	S	735	AGAGTACTGCAGAAATATGCGGAGCGCCAGGTCAGCAAGCCCATGATCCG				8q24	PREDICTED: Rattus norvegicus similar to KDEL (Lys-Asp-Glu-Leu) containing 2 protein (LOC315664), mRNA.					
Rattus norvegicus	RefSeq	GI_62656702-S	ILMN_64112	RGD1559961_PREDICTED	XM_573168.2	XM_573168.2		497974	109488683	XM_573168.2	RGD1559961_predicted	XP_573168.2	ILMN_1370360	0004050278	S	3464	CCAGGATTAGGGCCACAACATCCCAGCTTACTGTCTTTAGGCTCAGACTC	10	+	73185433-73185482	10q26	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656704-S	ILMN_64112	RGD1559961_PREDICTED	XM_573168.2	XM_573168.2		497974	109488683	XM_573168.2	RGD1559961_predicted	XP_573168.2	ILMN_1357839	0000430047	S	4022	CAGCTAAAGAGCGCTGATGCTTTTCCAGAGGACCCCAGCACCCACTTGAC	10	+	73185991-73186040	10q26	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658100-S	ILMN_268037	POLQ_PREDICTED	XM_001062099.1	XM_001062099.1		288079	109494370	XM_001062099.1	Polq_predicted	XP_001062099.1	ILMN_1368462	0001980403	S	7338	GAAGCAGCTAGAGACCTTCCATCCAACCTTCAAATCCCATGGTCATCGGG				11q22	PREDICTED: Rattus norvegicus polymerase (DNA directed), theta (predicted), transcript variant 1 (Polq_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664629-I	ILMN_51671	MBD1_PREDICTED	XM_574171.1	XM_574171.1		291439	62664629	XM_574171.1	Mbd1_predicted	XP_574171.1	ILMN_1375594	0006420324	S	1280	AACCAGAAGCGCCAGAAGTGTCGTTGGCGCCAGTGCCTGCAGTTTGCCAT				18q12.2	PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 1 (predicted) (Mbd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642437-S	ILMN_64347	TAF5_PREDICTED	XM_219965.4	XM_219965.4		294018	109460189	XM_219965.4	Taf5_predicted	XP_219965.3	ILMN_1357593	0002570026	S	2888	CGCCCGTGATTAGCGGGCTGTATGTAACTGGGTAGGAGATCACATTTCCT	1	+	252406185-252406234	1q54	PREDICTED: Rattus norvegicus TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666074-S	ILMN_57074	LOC502423	XM_577903.1	XM_577903.1		502423	62666074	XM_577903.1	LOC502423	XP_577903.1	ILMN_1358369	0003170168	S	475	GCCTACAAAGAAGACAGCCGAAGGAGGGGGACCTGGAGTTCATCAGTGAG					PREDICTED: Rattus norvegicus similar to vaccinia related kinase 3 (LOC502423), mRNA.					
Rattus norvegicus	RefSeq	GI_62639706-S	ILMN_290006	ALDH16A1	NM_001033706.1	NM_001033706.1		361571	76096351	NM_001033706.1	Aldh16a1	NP_001028878.1	ILMN_1353249	0004760487	S	2463	CTGAGGTCGAAGCCACCCACTCCATCTTTCATGCCAGGGACACCAAGTGC	1	-	95617779-95617825:95617826-95617828	1q22	Rattus norvegicus aldehyde dehydrogenase 16 family, member A1 (Aldh16a1), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC124726	MGC124726
Rattus norvegicus	RefSeq	GI_56090432-S	ILMN_298318	GLT8D1	NM_001007683.1	NM_001007683.1		306253	56090432	NM_001007683.1	Glt8d1	NP_001007684.1	ILMN_1357400	0003870040	S	1365	AGGGCTTGAGAGTCTTCTCTGTACCAACCACAGAAAACATGTCAGCTGGG	16	+	6444008-6444057	16p16	Rattus norvegicus glycosyltransferase 8 domain containing 1 (Glt8d1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	MGC94018; Da2-24	MGC94018; Da2-24
Rattus norvegicus	RefSeq	GI_47577264-S	ILMN_269565	OLR725	NM_001000514.1	NM_001000514.1		311180	47577264	NM_001000514.1	Olr725	NP_001000514.1	ILMN_1372039	0006840270	S	762	CGTTTACCTTAGGCCCACAGTCATCTTCCCCTTTGACAAAGCTGTGGCTG	3	+	74395890-74395939	3q24	Rattus norvegicus olfactory receptor 725 (Olr725), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr725	Olr725
Rattus norvegicus	RefSeq	GI_62644956-S	ILMN_57472	RGD1564403_PREDICTED	XM_231157.4	XM_231157.4		311866	109468038	XM_231157.4	RGD1564403_predicted	XP_231157.4	ILMN_1372566	0006370162	S	1804	CGGATGGGTCCTGGAGATCTGGCTAAGGTGGGTGTCTCAGAAGCAGGCCT	3	-	11915760-11915783:11916737-11916762	3p11	PREDICTED: Rattus norvegicus similar to Leucine rich repeat and sterile alpha motif containing 1 (predicted) (RGD1564403_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575878-S	ILMN_284461	SCN3B	NM_139097.3	NM_139097.3		245956	47575878	NM_139097.3	Scn3b	NP_620797.1	ILMN_1350770	0004760079	S	3698	TGTGACCAGGACCTTGGAGTGCCTGCTTATCATTCTGACCATCCAATCCC	8	+	43253879-43253928	8q22	Rattus norvegicus sodium channel, voltage-gated, type III, beta (Scn3b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA];  [goid 16974] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Scnb3	Scnb3
Rattus norvegicus	RefSeq	GI_62651780-S	ILMN_271577	RGD1564023_PREDICTED	XR_009148.1	XR_009148.1		366833	109481629	XR_009148.1	RGD1564023_predicted		ILMN_1369037	0006130632	S	165	TTCCACACGCGCGGCAAGCAAGACCAAGATCCTCGGAGGTGTCAGGCCCA				7q11	PREDICTED: Rattus norvegicus similar to ribosomal protein S19 (predicted) (RGD1564023_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657870-S	ILMN_266246	CD96	NM_001025032.1	NM_001025032.1		498079	68163542	NM_001025032.1	Cd96	NP_001020203.1	ILMN_1353555	0006370750	S	1116	GGGACTGCCCCAACAAAACGTCTACCCAATGTGACAGGTTCTACCCTGGG	11	+	56230357-56230406	11q21	Rattus norvegicus CD96 molecule (Cd96), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664824-S	ILMN_63585	LOC498910	XM_574199.1	XM_574199.1		498910	62664824	XM_574199.1	LOC498910	XP_574199.1	ILMN_1349322	0001410022	S	2136	GTCTTTTGAGATCAAAGGCCCTCTCGGGGCCAGCTCTGTAAATGTCACCT				19p12	PREDICTED: Rattus norvegicus similar to ADP-ribosylation factor-like 2 binding protein (LOC498910), mRNA.					
Rattus norvegicus	RefSeq	GI_11120681-S	ILMN_295816	CAMK2B	NM_021739.1	NM_021739.1		24245	11120681	NM_021739.1	Camk2b	NP_068507.1	ILMN_1367246	0000380672	S	1689	TGAGAGCTGCGCCTGGTTTCACCGGACAGAGTTGGTGTTTGGAGCCCAGC	14	-	86634791-86634837:86635122-86635122:86635123-86635124	14q21	Rattus norvegicus calcium/calmodulin-dependent protein kinase II, beta (Camk2b), mRNA.	An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins [goid 5954] [evidence TAS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate, dependent on the presence of calcium-bound calmodulin [goid 4683] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Ck2b	Ck2b
Rattus norvegicus	RefSeq	GI_62646645-S	ILMN_51916	LOC499970	XM_575323.1	XM_575323.1		499970	62646645	XM_575323.1	LOC499970	XP_575323.1	ILMN_1373536	0006400332	S	837	GTGGGGGAGGAGTCACGGAGGACCCGGCAGGTGGAAAAGGAAGAGGAATT					PREDICTED: Rattus norvegicus similar to IQ motif containing with AAA domain (LOC499970), mRNA.					
Rattus norvegicus	RefSeq	GI_14249129-S	ILMN_62278	LASP1	NM_032613.2	NM_032613.2		29278	71534280	NM_032613.2	Lasp1	NP_116002.1	ILMN_1355228	0004670019	S	581	TATCCCGACCAGTGCCCCAGTTTACCAGCAGCCCCAACAGCAGCAGGTGA	10	+	86587870-86587893:86588162-86588185:86590633-86590634	10q31	Rattus norvegicus LIM and SH3 protein 1 (Lasp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IDA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of an ion from one side of a membrane to the other [goid 15075] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_47578046-S	ILMN_286675	OLR103	NM_001000144.1	NM_001000144.1		293242	47578046	NM_001000144.1	Olr103	NP_001000144.1	ILMN_1357402	0004150647	S	785	CGCATCGCTTTGGCAAGCATGTGTCTCCAAGTGTCCATATCATCTTGGCA	1	+	161205697-161205746	1q32	Rattus norvegicus olfactory receptor 103 (Olr103), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr103	Olr103
Rattus norvegicus	RefSeq	GI_62648125-S	ILMN_53472	NANOG	XM_575662.2	XM_575662.2		414065	109472601	XM_575662.2	Nanog	XP_575662.2	ILMN_1365330	0006040088	S	509	AGAAGGGCTCAGCGCCGGTGGAGTATCCCAGCATCCATTGCAGCTATTCT	4	+	159196167-159196168:159196516-159196563	4q42	PREDICTED: Rattus norvegicus Nanog homeobox (Nanog), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process by which a cell becomes committed to become part of the mesoderm [goid 1710] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the gonad over time, from its formation to the mature structure. The gonad is an animal organ that produces gametes; in some species it also produces hormones [goid 8406] [evidence ISS]; The process whose specific outcome is the progression of the gonad over time, from its formation to the mature structure. The gonad is an animal organ that produces gametes; in some species it also produces hormones [goid 8406] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; The process that results in the patterns of cell differentiation that will arise in an embryo [goid 9880] [evidence ISS]; Any process that stops, prevents or reduces the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 10454] [evidence ISS]; The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types [goid 17145] [evidence ISS]; The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types [goid 17145] [evidence IEA]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells [goid 48863] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells [goid 48863] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659051-S	ILMN_266033	SART3_PREDICTED	XM_001080462.1	XM_001080462.1		304582	109497515	XM_001080462.1	Sart3_predicted	XP_001080462.1	ILMN_1360336	0003610022	S	2623	CAAAGTGGCGATCAGCAACCCCCCTCAGCGGAAAGTTCCAGAGAAGCCAG				12q16	PREDICTED: Rattus norvegicus squamous cell carcinoma antigen recognized by T-cells 3 (predicted) (Sart3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662705-S	ILMN_53955	CNOT7_PREDICTED	XM_224894.4	XM_224894.4		306492	109503383	XM_224894.4	Cnot7_predicted	XP_224894.1	ILMN_1353588	0005570070	S	2314	AGCCATGCAGAATACGTGACCACACCAGAGCATGTGTTGGAAGATTTTGG	16	+	55137437-55137486	16q12.1	PREDICTED: Rattus norvegicus CCR4-NOT transcription complex, subunit 7 (predicted) (Cnot7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650998-S	ILMN_65158	LOC497818	XM_579714.1	XM_579714.1		497818	62650998	XM_579714.1	LOC497818	XP_579714.1	ILMN_1365097	0007000138	S	3710	GGAGATGCAGAGTTTGGAGTTTGCCCAGCGGGTTTCCTGTCTTGCTTTGG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_178104 (LOC497818), mRNA.					
Rattus norvegicus	RefSeq	GI_9910255-S	ILMN_295120	HAAO	NM_020076.1	NM_020076.1		56823	9910255	NM_020076.1	Haao	NP_064461.1	ILMN_1371776	0002350372	S	997	CCTGACAGCTGCCCTTTCCAGACAGCTCTTTCAGCCTCATGACATCTCCG	6	-	7197557-7197606	6q12	Rattus norvegicus 3-hydroxyanthranilate 3,4-dioxygenase (Haao), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IDA]	The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence ISS]; The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 46874] [evidence IDA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3-hydroxyanthranilate + O2 = 2-amino-3-carboxymuconate semialdehyde [goid 334] [evidence ISS]; Catalysis of the reaction: 3-hydroxyanthranilate + O2 = 2-amino-3-carboxymuconate semialdehyde [goid 334] [evidence IEA]; Catalysis of the reaction: 3-hydroxyanthranilate + O2 = 2-amino-3-carboxymuconate semialdehyde [goid 334] [evidence IDA]; Catalysis of the reaction: 3-hydroxyanthranilate + O2 = 2-amino-3-carboxymuconate semialdehyde [goid 334] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575865-S	ILMN_268387	SCNN1A	NM_031548.2	NM_031548.2		25122	47575865	NM_031548.2	Scnn1a	NP_113736.1	ILMN_1359759	0006840332	S	3297	TTTTGTATCCTTCCGGTCTAGCCCAGTCTCCCACTTGGGACGGGTAGGCA	4	+	161469189-161469238	4q42	Rattus norvegicus sodium channel, nonvoltage-gated, type I, alpha (Scnn1a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence TAS]; Any process that modulates the levels of body fluids [goid 50878] [evidence IMP]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 15280] [evidence IEA];  [goid 15280] [evidence IDA];  [goid 15280] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62657355-S	ILMN_274150	LOC688264	XR_009493.1	XR_009493.1		688264	109492248	XR_009493.1	LOC688264		ILMN_1369455	0004760411	S	4379	ATGGCGAGAACCCTCAGCAGGCTCTGGAGATCAATAGGGTGATGCTGCGG					PREDICTED: Rattus norvegicus similar to Myosin-15 (Myosin XV) (Unconventional myosin-15) (LOC688264), mRNA.					
Rattus norvegicus	RefSeq	GI_13027427-S	ILMN_302244	SYNPR	NM_023974.1	NM_023974.1		66030	13027427	NM_023974.1	Synpr	NP_076464.1	ILMN_1363264	0002320601	S	953	AGTTATGGGTCAAGTGGTGGGTACAGTCAGCAGGCGAGTCTGGGGCCAAC	15	-	13135914-13135963	15p16	Rattus norvegicus synaptoporin (Synpr), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence NAS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649957-S	ILMN_56118	MFAP2_PREDICTED	XM_233602.4	XM_233602.4		313662	109475742	XM_233602.4	Mfap2_predicted	XP_233602.2	ILMN_1370378	0001410364	S	380	CTGCCGTGAAGAACAGTACCCATGTACCCGCCTCTACTCCATCCACAAGC	5	+	159873452-159873501	5q36	PREDICTED: Rattus norvegicus microfibrillar-associated protein 2 (predicted) (Mfap2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666702-S	ILMN_67794	LOC503433	XM_578974.1	XM_578974.1		503433	62666702	XM_578974.1	LOC503433	XP_578974.1	ILMN_1371660	0004730451	S	1097	GAGCCTCCACCGCGGAGCGCACGCCGAACTTCGCCCTGAAAATAAGATTA					PREDICTED: Rattus norvegicus similar to protein kinase C inhibitor (LOC503433), mRNA.					
Rattus norvegicus	RefSeq	GI_62644564	ILMN_59435	LOC362060	XM_342362.2	XM_342362.2		362060	62644564	XM_342362.2	LOC362060	XP_342363.1	ILMN_1650370	0006200300	S	804	TTGATCTGAGAGAGCTGTGAGGGTGATTTGGGTCACTGTGTAGCCCCAGC					PREDICTED: Rattus norvegicus LOC362060 (predicted) (LOC362060), mRNA.					
Rattus norvegicus	RefSeq	GI_29789294-S	ILMN_268112	DNMT1	NM_053354.1	NM_053354.1		84350	29789294	NM_053354.1	Dnmt1	NP_445806.1	ILMN_1350922	0002650133	S	4973	CCCGTCGAGCCCCATCATTTGAAGTGTTCTGCTCAGTGTCTGTGACCATG				8q13	Rattus norvegicus DNA (cytosine-5-)-methyltransferase 1 (Dnmt1), mRNA.	A compact and highly condensed form of chromatin [goid 792] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes [goid 5657] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence TAS]; The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence ISS]; Any process involved in maintaining the methylation state of a nucleotide sequence [goid 10216] [evidence IDA]; The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule [goid 10424] [evidence IDA]; The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule [goid 10424] [evidence IDA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any mechanism, at the level of transcription or post-transcription, causing long-term gene inactivation [goid 16458] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt [goid 46499] [evidence IDA]; The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism [goid 46500] [evidence IDA]; The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine [goid 3886] [evidence IGI]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine [goid 3886] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine [goid 3886] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with a methylated cytosine/guanine dinucleotide [goid 8327] [evidence IDA]; Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate [goid 8757] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters [goid 45322] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpG [goid 51718] [evidence IDA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpG [goid 51718] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine [goid 3886] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47059174-S	ILMN_294530	GTF2H4	NM_212501.1	NM_212501.1		294236	47059174	NM_212501.1	Gtf2h4	NP_997666.1	ILMN_1352437	0004760372	S	1294	CAGACCAGATTCGGCTGTGGGAGCTGGAAAGGGACAGACTTCGGTTCACT	20	+	3227157-3227206	20p12	Rattus norvegicus general transcription factor II H, polypeptide 4 (Gtf2h4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC156549	MGC156549
Rattus norvegicus	RefSeq	GI_56090372-S	ILMN_294576	RNF181	NM_001007647.1	NM_001007647.1		297337	56090372	NM_001007647.1	Rnf181	NP_001007648.1	ILMN_1349043	0004570402	S	1482	GGGTTTCACTATGTGACCTTGGCTGGCTTGGAGCCCACTGTATAGACCAG	4	-	105664862-105664911	4q33	Rattus norvegicus ring finger protein 181 (Rnf181), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_56605661-S	ILMN_278949	GALK1	NM_001008282.1	NM_001008282.1		287835	56605661	NM_001008282.1	Galk1	NP_001008283.1	ILMN_1362837	0000730280	S	1192	GTGCTGAGCTTGTGAGGTGTCCCTGCGAGTGACGTACGCACAGGCGTAAG	10	-	106116856-106116891:106116892-106116905	10q32.3	Rattus norvegicus galactokinase 1 (Galk1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IDA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence ISS]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose [goid 19402] [evidence ISS]; The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y [goid 46835] [evidence IEA]; The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y [goid 46835] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-galactose = ADP + D-galactose 1-phosphate [goid 4335] [evidence IEA]; Catalysis of the reaction: ATP + D-galactose = ADP + D-galactose 1-phosphate [goid 4335] [evidence IDA]; Catalysis of the reaction: ATP + D-galactose = ADP + D-galactose 1-phosphate [goid 4335] [evidence ISS]; Catalysis of the reaction: ATP + D-galactose = ADP + D-galactose 1-phosphate [goid 4335] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides [goid 5534] [evidence IDA]; Interacting selectively with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides [goid 5534] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC94825	MGC94825
Rattus norvegicus	RefSeq	GI_62654106-S	ILMN_63654	LOC367123	XM_345960.2	XM_345960.2		367123	62654106	XM_345960.2	LOC367123	XP_345961.2	ILMN_1358359	0002120279	S	2	GGCGTGGCTGTTCTCACCTTCACTTAATGACCGTCCCTATGATTTTAAGC					PREDICTED: Rattus norvegicus similar to pumilio 2 (LOC367123), mRNA.					
Rattus norvegicus	RefSeq	GI_62666906-S	ILMN_55413	RGD1559523_PREDICTED	XM_228602.3	XM_228602.3		302438	109510809	XM_228602.3	RGD1559523_predicted	XP_228602.2	ILMN_1373907	0001850458	S	918	GTCCAAGGGTAAATCCCCAAAATATGATTTCCTGTGGGGTTCCCGGGCCC	X	-	79132487-79132536	Xq22	PREDICTED: Rattus norvegicus similar to Smage-1 protein (predicted) (RGD1559523_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649121-S	ILMN_299556	JMJD2C_PREDICTED	XM_001067369.1	XM_001067369.1		298144	109476661	XM_001067369.1	Jmjd2c_predicted	XP_001067369.1	ILMN_1366528	0004850044	S	4602	GAATGGCCCACTAGATAAAACTCCTGCCAGAAAAGAGGTTGTTCCCTCTC				5q31	PREDICTED: Rattus norvegicus jumonji domain containing 2C (predicted) (Jmjd2c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660902-S	ILMN_61544	RGD1566034_PREDICTED	XM_344260.3	XM_344260.3		364193	109500035	XM_344260.3	RGD1566034_predicted	XP_344261.3	ILMN_1351691	0000060722	S	2844	CTTACTGGGCAAGGCTCAGCTCTACTTAACAGTCAACCAGGCTCCACAGG	14	-	89463158-89463207	14q21	PREDICTED: Rattus norvegicus similar to polycystic kidney disease 1 like 1 (predicted) (RGD1566034_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717932-S	ILMN_267908	LOC503306	XM_001053864.1	XM_001053864.1		503306	109510066	XM_001053864.1	LOC503306	XP_001053864.1	ILMN_1355662	0003060068	S	1325	GGAGATAAAGAACCTGGTGGGAGCCCTGGACGAAGACGATGGAGACAGCG					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 43 (LOC503306), mRNA.					
Rattus norvegicus	RefSeq	GI_62662974-A	ILMN_280089	SLC10A2	NM_017222.2	NM_017222.2		29500	15011856	NM_017222.2	Slc10a2	NP_058918.1	ILMN_1376524	0000430433	S	2624	CTCCAGGCAGCAAAGCAGGAAAGTCACCCCTCAGATGTCACAGATATACC	16	+	89960995-89961044	16q12.5	Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter family), member 2 (Slc10a2), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence TAS]; The directed movement of bile acid and bile salts into, out of, within or between cells [goid 15721] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in) [goid 8508] [evidence IDA]	ISBAT	ISBAT
Rattus norvegicus	RefSeq	GI_62641783-S	ILMN_280845	RGD1560544_PREDICTED	XM_001075099.1	XM_001075099.1		293689	109463419	XM_001075099.1	RGD1560544_predicted	XP_001075099.1	ILMN_1371560	0006510184	S	2316	CATGGAACCCAGTGTTGTCGAGGTCATCTGCGAGCGCGGCTAGAATCCAC				1q43	PREDICTED: Rattus norvegicus similar to chromosome 11 open reading frame2 (predicted), transcript variant 1 (RGD1560544_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11067430-S	ILMN_277014	SERPINB2	NM_021696.1	NM_021696.1		60325	11067430	NM_021696.1	Serpinb2	NP_067728.1	ILMN_1351429	0006220068	S	1147	GGGGCAGTTATGACAGGGAGAACTGGTCATGGTGGTCCACAGTTTGTGGC	13	+	13640827-13640876	13p13	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B, member 2 (Serpinb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	Pai2a	Pai2a
Rattus norvegicus	RefSeq	GI_62641683-S	ILMN_271515	LRP5_PREDICTED	XM_001067386.1	XM_001067386.1		293649	109463306	XM_001067386.1	Lrp5_predicted	XP_001067386.1	ILMN_1349209	0006020594	S	5063	TAAGAAGTGAGAAATGTGAGCGGTGAAGGGGTGGGCAGGGCTGGGAAAAC				1q42	PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 5 (predicted) (Lrp5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079062-S	ILMN_301952	RGD1310039	NM_001014165.1	NM_001014165.1		361747	62079062	NM_001014165.1	RGD1310039	NP_001014187.1	ILMN_1350424	0002470082	S	1340	GACTGAAGGATGCAGAGCTCGCTCATGGAGACACTGACACACGAACAGCA	1	-	232561188-232561237	1q52	Rattus norvegicus similar to hypothetical protein FLJ10058 (RGD1310039), mRNA.					
Rattus norvegicus	RefSeq	GI_33469058-S	ILMN_295670	ACBD3	NM_182843.1	NM_182843.1		289312	33469058	NM_182843.1	Acbd3	NP_878263.1	ILMN_1373125	0001940324	S	2898	GGCTACTACGTCAGGCTGTGTGAGGTTTTCATTTGCTGCCTTTCCTTCTG	13	+	96489767-96489816	13q26	Rattus norvegicus acyl-Coenzyme A binding domain containing 3 (Acbd3), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661055-S	ILMN_55028	RGD1304704	XM_217550.3	XM_217550.3		302247	109501204	XM_217550.3	RGD1304704	XP_217550.3	ILMN_1362086	0004610019	S	1242	GGGTTTCAGCTTCTCACCTTAGTGATGGGAACTGTCACACCAGCATGTGC	15	+	4800914-4800963	15p16	PREDICTED: Rattus norvegicus similar to Hypothetical protein CGI-99 (RGD1304704), mRNA.			Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650938-S	ILMN_296694	LOC500684	XM_001060736.1	XM_001060736.1		500684	109478427	XM_001060736.1	LOC500684	XP_001060736.1	ILMN_1374694	0003520452	S	2490	GCTCGCACAGAGAGCCAGAAGACAGGCATGGCGAGCCAAAGAAGAAGTGG	6	+	104040509-104040558	6q24	PREDICTED: Rattus norvegicus hypothetical protein LOC500684 (LOC500684), mRNA.		The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47578000	ILMN_285071	OLR107	NM_001000148.1	NM_001000148.1		293246	47578000	NM_001000148.1	Olr107	NP_001000148.1	ILMN_1650686	0000780242	S	569	GCGGCGATGTCACATTCAGCAGCGTCTATGGATTGGTCTGTGTGCTCTGC	1	+	161253541-161253590	1q32	Rattus norvegicus olfactory receptor 107 (Olr107), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr107	Olr107
Rattus norvegicus	RefSeq	GI_62662585-S	ILMN_288008	RGD1311747_PREDICTED	XM_001053568.1	XM_001053568.1		290706	109504090	XM_001053568.1	RGD1311747_predicted	XP_001053568.1	ILMN_1362292	0000520021	S	1237	CATCTGGCAAGCAGAAGTGAGGAGGACATAGACCAGCTCGCAGGTGAGCC				16p12	PREDICTED: Rattus norvegicus similar to 2700029M09Rik protein (predicted) (RGD1311747_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650976-S	ILMN_63734	LOC503040	XM_578561.1	XM_578561.1		503040	62650976	XM_578561.1	LOC503040	XP_578561.1	ILMN_1354301	0002570446	S	2	GGCATCGGAGCGGAAGACTAAGTTATCGAAAACCTGCTGCGAGAAGGAGA					PREDICTED: Rattus norvegicus similar to M phase phosphoprotein 6 (LOC503040), mRNA.					
Rattus norvegicus	RefSeq	GI_62717922-S	ILMN_268694	LOC294560	XM_001054087.1	XM_001054087.1		294560	109510076	XM_001054087.1	LOC294560	XP_001054087.1	ILMN_1367794	0000110050	S	1013	AAGAGACTGAGAGACCCGCTACAAGTACATCTGCCCCTCCGACAGATCGG					PREDICTED: Rattus norvegicus similar to CG18769-PB, isoform B (LOC294560), mRNA.					
Rattus norvegicus	RefSeq	GI_62666967-S	ILMN_284832	NDUFB4	XM_001056198.1	XM_001056198.1		288088	109511796	XM_001056198.1	Ndufb4	XP_001056198.1	ILMN_1351573	0004120427	S	127	GCGCAGGTCGAGTGCATGAGCATAAGGGCCTGGCTTAAACGGGAGTATCT				11q21	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa (Ndufb4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]	Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence IEA]; Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol [goid 8137] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8394214-S	ILMN_281324	RPS17	NM_017152.1	NM_017152.1		29286	8394214	NM_017152.1	Rps17	NP_058848.1	ILMN_1360885	0004150070	S	34	GTTCGCACCAAGACTGTGAAGAAGGCGGCCCGGGTCATCATCGAGAAGTA	1	-	137554505-137554554	1q31	Rattus norvegicus ribosomal protein S17 (Rps17), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process of regulating the production and elimination of erythrocytes within an organism [goid 34101] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651289-S	ILMN_285793	LOC688273	XM_001081726.1	XM_001081726.1		688273	109519220	XM_001081726.1	LOC688273	XP_001081726.1	ILMN_1354542	0003120368	S	3083	TTGATGGTGGAACCTGGGCGCTGGCTGGAGCAGTTCGAGGTGGACCCAGA					PREDICTED: Rattus norvegicus hypothetical protein LOC688273 (LOC688273), mRNA.					
Rattus norvegicus	RefSeq	GI_62641401	ILMN_289035	RGD1559891_PREDICTED	XM_001053430.1	XM_001053430.1		309028	109463020	XM_001053430.1	RGD1559891_predicted	XP_001053430.1	ILMN_1650577	0006020121	S	443	CCAACCAACGTGCAGGGACTATGTACAATGCTATGATGGCGCAGAGAGCG				1q41	PREDICTED: Rattus norvegicus similar to synaptonemal complex protein 3 (predicted) (RGD1559891_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650379-S	ILMN_289051	MEMO1	NM_001029917.1	NM_001029917.1		298787	71361622	NM_001029917.1	Memo1	NP_001025088.1	ILMN_1351135	0006550167	S	868	GCTGGCAAGACAGTTCAGTCAGTTACGCAGCTGGAGCACTCACGGTCCAC	6	+	21196875-21196924	6q13	Rattus norvegicus mediator of cell motility 1 (Memo1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]			MGC116222	MGC116222
Rattus norvegicus	RefSeq	GI_51948411-S	ILMN_270346	ETFB	NM_001004220.1	NM_001004220.1		292845	51948411	NM_001004220.1	Etfb	NP_001004220.1	ILMN_1348924	0004150332	S	495	GGAGGGGGACAAGGTAAAAGTGGAACGGGAAATTGACGGGGGTCTGGAGA	1	+	93832996-93833045	1q22	Rattus norvegicus electron-transfer-flavoprotein, beta polypeptide (Etfb), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	MGC94808	MGC94808
Rattus norvegicus	RefSeq	GI_47576174-S	ILMN_270048	OLR1355	NM_214823.1	NM_214823.1		287080	47576174	NM_214823.1	Olr1355	NP_999988.1	ILMN_1371572	0000940711	S	474	GCACACACTGCTGATGGCTCAACTCTCCTTTTGTGGGGACAACATCATCC	10	-	11379164-11379213	10q12	Rattus norvegicus olfactory receptor 1355 (Olr1355), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-11379687-11378725_ORF; Olr1355	ratchr10-11379687-11378725_ORF; Olr1355
Rattus norvegicus	RefSeq	GI_8393575-S	ILMN_298046	HSD17B7	NM_017235.1	NM_017235.1		29540	8393575	NM_017235.1	Hsd17b7	NP_058931.1	ILMN_1361546	0006130746	S	1307	GCGTGATGGGGACACAGTACAGCCTGAATCTTCTTTTAGTCCCAGCGAGG	13	-	85776366-85776415	13q24	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 7 (Hsd17b7), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IPI]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IPI]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]	Catalysis of the reaction: 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NADP+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + NADPH + H+ [goid 253] [evidence IEA]; Catalysis of the reaction: 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NADP+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + NADPH + H+ [goid 253] [evidence ISS]; Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IEA]; Interacting selectively with the prolactin receptor [goid 5148] [evidence IMP]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 4-alpha-methyl-5-alpha-cholest-7-en-3-beta-ol + NADP+ = 4-alpha-methyl-5-alpha-cholest-7-en-3-one + NADPH + H+ [goid 50576] [evidence IEA]; Catalysis of the reaction: 4-alpha-methyl-5-alpha-cholest-7-en-3-beta-ol + NADP+ = 4-alpha-methyl-5-alpha-cholest-7-en-3-one + NADPH + H+ [goid 50576] [evidence ISS]; Catalysis of the reaction: 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NADP+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + NADPH + H+ [goid 253] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663486-S	ILMN_57878	DUSP22_PREDICTED	XM_341523.3	XM_341523.3		361242	109504792	XM_341523.3	Dusp22_predicted	XP_341524.3	ILMN_1369425	0002190551	S	875	TCTCATGACGATACCCAAGAAGGAAGCCTGCACCTGGGAAATGTGCAGCG	17	-	40229933-40229982	17p12	PREDICTED: Rattus norvegicus dual specificity phosphatase 22 (predicted) (Dusp22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507066-S	ILMN_63430	SCN8A	NM_019266.2	NM_019266.2		29710	78126164	NM_019266.2	Scn8a	NP_062139.2	ILMN_1350136	0004070632	S	6281	GGACAAAGGACCCTGCTCCCTGGACTCACAGATCTCCTATCGCTTGGGCA	7	+	139794132-139794181	7q36	Rattus norvegicus sodium channel, voltage-gated, type 8, alpha subunit (Scn8a), mRNA.	A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IDA]; A sodium channel in a cell membrane whose opening is governed by the membrane potential [goid 1518] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IDA]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IDA]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IMP]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IC ]; Catalysis of the transmembrane transfer of a sodium ion by a voltage-gated channel [goid 5248] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758513-S	ILMN_269881	CITED4	NM_053699.1	NM_053699.1		114491	16758513	NM_053699.1	Cited4	NP_446151.1	ILMN_1349361	0000780400	S	670	AGCTCTTCCTTGGCCAAAGCGAGTTCGATTGCTTCTCGGACCTGGGGTCA	5	+	141259233-141259282	5q36	Rattus norvegicus Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 (Cited4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	Mrg2	Mrg2
Rattus norvegicus	RefSeq	GI_62653706-S	ILMN_66422	LOC501003	XM_576413.1	XM_576413.1		501003	62653706	XM_576413.1	LOC501003	XP_576413.1	ILMN_1365104	0000070070	S	1719	TCACGTTCACTGACAGCACAGGACCCGCCTTCAAGTAGGAAGCAGTCATG				8q24	PREDICTED: Rattus norvegicus similar to PGC7 (LOC501003), mRNA.					
Rattus norvegicus	RefSeq	GI_47577960-S	ILMN_265059	OLR1115	NM_001000885.1	NM_001000885.1		405185	47577960	NM_001000885.1	Olr1115	NP_001000885.1	ILMN_1374300	0002650435	S	601	CTTGCAGTTATTGTCTTTGGGGGTGGCCCTGTCTGTGGAATTGCATTTTC	8	-	16101807-16101856	8q12	Rattus norvegicus olfactory receptor 1115 (Olr1115), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1115	Olr1115
Rattus norvegicus	RefSeq	GI_50511333-S	ILMN_286572	KPRP	NM_001002290.1	NM_001002290.1		432393	50511333	NM_001002290.1	Kprp	NP_001002290.1	ILMN_1372224	0002470180	S	2719	GGTTATGGTTGGCAGCTTGAGAATGCTCTGTCCTGTTGGGAAAGTACAGG	2	-	185839442-185839491	2q34	Rattus norvegicus keratinocytes proline-rich protein (Kprp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_11177917-S	ILMN_63965	CTTN	NM_021868.1	NM_021868.1		60465	11177917	NM_021868.1	Cttn	NP_068640.1	ILMN_1350524	0001770092	S	1444	TGATTGACGATGGCTGGTGGCGTGGGGTGTGCAAAGGCAGATATGGGCTC				1q41-q42	Rattus norvegicus cortactin isoform B (Cttn), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93456; Cttnb	MGC93456; Cttnb
Rattus norvegicus	RefSeq	GI_19745185-A	ILMN_279275	CREB1	NM_134443.1	NM_134443.1		81646	19745185	NM_134443.1	Creb1	NP_604392.1	ILMN_1649829	0005670414	A	719	TTCGCACAGCACCCACTAGCACCATTGCCCCTGGAGTTGTTATGGCGTCC	9	+	63212469-63212518	9q32	Rattus norvegicus cAMP responsive element binding protein 1 (Creb1), transcript variant A, mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IMP]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that modulates the size of a cell [goid 8361] [evidence ISS]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IMP]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta3 [goid 32916] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Creb	Creb
Rattus norvegicus	RefSeq	GI_13591923-A	ILMN_279275	CREB1	NM_134443.1	NM_134443.1		81646	19745185	NM_134443.1	Creb1	NP_604392.1	ILMN_1376791	0000130324	A	779	TTCCTACACAGCCTGCTGAAGAAGCAGCACGAAAGAGAGAGGTTCGTCTA	9	+	63212529-63212578	9q32	Rattus norvegicus cAMP responsive element binding protein 1 (Creb1), transcript variant A, mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IMP]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The secretion of milk by the mammary gland [goid 7595] [evidence ISS]; Any process that modulates the size of a cell [goid 8361] [evidence ISS]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IMP]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta3 [goid 32916] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II [goid 3704] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	Creb	Creb
Rattus norvegicus	RefSeq	GI_13994172-A	ILMN_274316	NR4A3	NM_017352.1	NM_017352.1		58853	8393837	NM_017352.1	Nr4a3	NP_059048.1	ILMN_1376762	0003190577	S	1686	GATGAACGCCCTTGTCCGAGCTTTAACAGACGCAACGCCCAGAGACCTTG	5	+	64724886-64724935	5q22	Rattus norvegicus nuclear receptor subfamily 4, group A, member 3 (Nr4a3), transcript variant 2, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Behavior in a fully developed and mature organism [goid 30534] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process by which the anatomical structures of the semicircular canals are generated and organized. Morphogenesis pertains to the creation of form [goid 48752] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; A reflex process by which a response to an angular or linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the inner ear and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness [goid 60005] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	NOR-2	NOR-2
Rattus norvegicus	RefSeq	GI_62653153-S	ILMN_267852	RGD1563200_PREDICTED	XM_001070288.1	XM_001070288.1		500938	109483012	XM_001070288.1	RGD1563200_predicted	XP_001070288.1	ILMN_1370837	0002480168	S	269	GCCTGTCATGTGGTCCCAATCAAAAGGCTGAAGGAACACGAGGCCAACTG				7q36	PREDICTED: Rattus norvegicus similar to CDNA sequence BC048502 (predicted) (RGD1563200_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34856125-A	ILMN_282758	NAV2	XM_001080281.1	XM_001080281.1		171563	109462006	XM_001080281.1	Nav2	XP_001080281.1	ILMN_1376491	0004200438	S	2712	GTATATGACCGATGGCGGACTTGGCCTTTACACTCGTCGCCTGAACCGGC				1q22	PREDICTED: Rattus norvegicus neuron navigator 2, transcript variant 1 (Nav2), mRNA.		The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639795-I	ILMN_282758	NAV2	XM_001080281.1	XM_001080281.1		171563	109462006	XM_001080281.1	Nav2	XP_001080281.1	ILMN_1376211	0005290019	S	7290	CAAGCAGGTGCCCCCCAGCGACACCGAAGGAGACCCACTGATGAACATGT				1q22	PREDICTED: Rattus norvegicus neuron navigator 2, transcript variant 1 (Nav2), mRNA.		The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644174-S	ILMN_62932	LOC362015	XM_342313.3	XM_342313.3		362015	109465370	XM_342313.3	LOC362015	XP_342314.2	ILMN_1361521	0005270451	S	3251	CCTTCTTTGGGGTTTCCAGGTCTTTGACCAGACCCAGTTCCCAGCTCGCC	2	-	203633307-203633356	2q34	PREDICTED: Rattus norvegicus similar to adenosine monophosphate deaminase 2 (isoform L) (LOC362015), mRNA.					
Rattus norvegicus	RefSeq	GI_57114341-S	ILMN_268917	LDHD	NM_001008893.1	NM_001008893.1		307858	57114341	NM_001008893.1	Ldhd	NP_001008893.1	ILMN_1358081	0005420152	S	1293	GCTGCTTCAAGAGGAAGTGGGTCCTGTGGGTGTGGAGACCATGAGGCAAC	19	-	41543396-41543445	19q12	Rattus norvegicus lactate dehydrogenase D (Ldhd), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	Ac2-202	Ac2-202
Rattus norvegicus	RefSeq	GI_62644916-S	ILMN_270166	LOC686132	XM_001067579.1	XM_001067579.1		686132	109468001	XM_001067579.1	LOC686132	XP_001067579.1	ILMN_1352771	0002030739	S	1341	CTGGCTTGGGACCGCAGGAACTGTAGAGATGTGGACGAGTGTGCAGGAGA	3	+	10559675-10559702:10560140-10560161	3p12	PREDICTED: Rattus norvegicus similar to hemicentin 1, transcript variant 2 (LOC686132), mRNA.					
Rattus norvegicus	RefSeq	GI_62659321-S	ILMN_272551	PLEKHA6_PREDICTED	XM_001060716.1	XM_001060716.1		360842	109498630	XM_001060716.1	Plekha6_predicted	XP_001060716.1	ILMN_1373375	0000840450	S	3763	CCGGTCGCTCCCTTGAGCCCGGAGGAATTGAAGGAGAAGCAGAAGAAGGT				13q13	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family A member 6 (predicted) (Plekha6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978542-S	ILMN_263611	ATP1A1	NM_012504.1	NM_012504.1		24211	6978542	NM_012504.1	Atp1a1	NP_036636.1	ILMN_1351569	0006840338	S	3488	GCTGCCCGAAAAACACCGTGGACGGGGACGACAGCGGGGAAGGTTTATAT				2q34	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide (Atp1a1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence IDA]; Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior [goid 5890] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IDA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The directed movement of potassium ions into a cell or organelle [goid 10107] [evidence IDA]; The transport of protons against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport [goid 15988] [evidence TAS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment [goid 30641] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids [goid 31947] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of heart contraction [goid 45823] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of striated muscle contraction [goid 45989] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 4-nitrophenyl phosphate + H2O = 4-nitrophenol + phosphate [goid 3869] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in) [goid 5391] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage [goid 15077] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IDA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Nkaa1b	Nkaa1b
Rattus norvegicus	RefSeq	GI_62657965-S	ILMN_276395	SEMA5B_PREDICTED	XM_001071508.1	XM_001071508.1		303901	109494475	XM_001071508.1	Sema5b_predicted	XP_001071508.1	ILMN_1364516	0002680195	S	3048	CACCTGATAGTCACTGGCGTGTCCTGCTTCCTGGGATCTGGGCTACTGAC				11q22	PREDICTED: Rattus norvegicus sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (predicted) (Sema5b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654344-S	ILMN_275230	CAMP	XM_236642.3	XM_236642.3		316010	62654344	XM_236642.3	Camp	XP_236642.1	ILMN_1358933	0002480059	S	288	TGCCTTCAAGGAACAGGGGGTAGTGAAGCAGTGTATGGGGACAGTCACCC	8	-	114215740-114215771:114215914-114215931	8q32	PREDICTED: Rattus norvegicus cathelicidin antimicrobial peptide (Camp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase [goid 42581] [evidence ISS]	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism [goid 50829] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_62654566-S	ILMN_277196	APLP2	XM_001056214.1	XM_001056214.1		64312	109484427	XM_001056214.1	Aplp2	XP_001056214.1	ILMN_1351182	0003190113	S	2899	TGCAGGTGGGCTGGAAGAGCCTCAGCGTTTGTGCTTGACTGCTGACCACC					PREDICTED: Rattus norvegicus amyloid beta (A4) precursor-like protein 2, transcript variant 8 (Aplp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; Any process that modulates the frequency, rate or extent of EGF receptor activity [goid 7176] [evidence ISS]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653446-S	ILMN_277196	APLP2	XM_001056214.1	XM_001056214.1		64312	109484427	XM_001056214.1	Aplp2	XP_001056214.1	ILMN_1356164	0006370132	S	163	ATTGGGGTGACTCTACATCATCCACCTTCAGATTCGGGATTCGGGCGCGC					PREDICTED: Rattus norvegicus amyloid beta (A4) precursor-like protein 2, transcript variant 8 (Aplp2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence ISS]; The regulation of the levels, transport, and metabolism of copper ions within a cell or between a cell and its external environment [goid 6878] [evidence ISS]; Any process that modulates the frequency, rate or extent of EGF receptor activity [goid 7176] [evidence ISS]; The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes [goid 7617] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664144-S	ILMN_65801	LOC498833	XM_574114.1	XM_574114.1		498833	62664144	XM_574114.1	LOC498833	XP_574114.1	ILMN_1348814	0001570168	S	3699	CAGCAGGCAGCAACTCAGAAGAAAAAAGCTTGGTCATTTCCTATCAACCC					PREDICTED: Rattus norvegicus similar to LRRGT00065 (LOC498833), mRNA.					
Rattus norvegicus	RefSeq	GI_47777691-S	ILMN_288418	OLR921	NM_001001385.1	NM_001001385.1		366798	47777691	NM_001001385.1	Olr921	NP_001001385.1	ILMN_1356604	0006020400	S	455	TCATTCTCCCACCAATTGGTCTAGGCTTACGCCTGGAATTCTGTGACTCT	7	-	4080934-4080983	7q11	Rattus norvegicus olfactory receptor 921 (Olr921), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr921	Olr921
Rattus norvegicus	RefSeq	GI_62657272-S	ILMN_263839	RGD1306364	XM_001081597.1	XM_001081597.1		303635	109492132	XM_001081597.1	RGD1306364	XP_001081597.1	ILMN_1357332	0000780204	S	1966	CAGGCTCAGCGATGTGATGCGGGAGTCACTACTGGAAGATCAGCTCACCC				10q32.1	PREDICTED: Rattus norvegicus similar to cDNA sequence BC029169 (RGD1306364), mRNA.					
Rattus norvegicus	RefSeq	GI_62656008-A	ILMN_290355	IRGM	NM_001012007.1	NM_001012007.1		303090	58865581	NM_001012007.1	Irgm	NP_001012007.1	ILMN_1376472	0004570427	S	1915	ATCAATGACTGGGGGCTGACAAGATGGCTCACTGGCTGCTCTTCCACAGG	10	-	34132756-34132805	10q21	Rattus norvegicus immunity-related GTPase family, M (Irgm), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ifi1	Ifi1
Rattus norvegicus	RefSeq	GI_58865581	ILMN_290355	IRGM	NM_001012007.1	NM_001012007.1		303090	58865581	NM_001012007.1	Irgm	NP_001012007.1	ILMN_1530403	0006040110	S	2100	TGACCATGATTCTTAGATGGAATATAGACATTTTGTTTTCAGCTATTAAG	10	-	34132571-34132620	10q21	Rattus norvegicus immunity-related GTPase family, M (Irgm), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Ifi1	Ifi1
Rattus norvegicus	RefSeq	GI_34869503-S	ILMN_62517	RGD1562692_PREDICTED	XM_341290.3	XM_341290.3		361015	109501375	XM_341290.3	RGD1562692_predicted	XP_341291.3	ILMN_2039458	0005550367	S	2816	CCAGTGAACTGCCTGTCAGCCCTCACTCACACACTCCTCTAGACAAACTC	15	-	12672972-12673021	15p16	PREDICTED: Rattus norvegicus similar to spinocerebellar ataxia 7 homolog (predicted) (RGD1562692_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56676361-A	ILMN_279097	RGD1306446	NM_001008554.1	NM_001008554.1		289546	56676361	NM_001008554.1	RGD1306446	NP_001008554.1	ILMN_1376337	0004480440	S	1812	CTGGATATGAGGCTAGGACTGAGGAGATGGCAATGAGCAGGTCCGTTCCT	14	+	23239533-23239582	14p21	Rattus norvegicus similar to RIKEN cDNA 9930032O22 gene (RGD1306446), mRNA.				Desc4	Desc4
Rattus norvegicus	RefSeq	GI_62663699-S	ILMN_63764	NID1	XM_213954.4	XM_213954.4		25494	109505095	XM_213954.4	Nid1	XP_213954.4	ILMN_1364922	0000670441	S	3656	CGAACTCGGTGATTGCCATGGACCTTGCTGTATCCAAAGAGATGGATGCC	17	-	66858538-66858587	17q12.1	PREDICTED: Rattus norvegicus nidogen 1 (Nid1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IEA]; The process whose specific outcome is the progression of the glomerular basement membrane over time, from its formation to the mature structure. The glomerular basement membrane is the basal laminal portion of the glomerulus which performs the actual filtration [goid 32836] [evidence ISS]; The process whose specific outcome is the progression of the glomerular basement membrane over time, from its formation to the mature structure. The glomerular basement membrane is the basal laminal portion of the glomerulus which performs the actual filtration [goid 32836] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576476-S	ILMN_298778	OLR1606	NM_001000502.1	NM_001000502.1		305711	47576476	NM_001000502.1	Olr1606	NP_001000502.1	ILMN_1359959	0006100010	S	558	GGCATGCGCAGACACAGCCCTCTATGAGACAGTGATGTACGTGTGCTGTG	15	-	12472465-12472514	15p16	Rattus norvegicus olfactory receptor 1606 (Olr1606), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr38	tpcr38
Rattus norvegicus	RefSeq	GI_62646414-S	ILMN_61068	NFATC2_PREDICTED	XM_230877.3	XM_230877.3		311658	62646414	XM_230877.3	Nfatc2_predicted	XP_230877.3	ILMN_1366684	0001580026	S	3138	TCCACGGTGACTGGACAAGAAAAGCAACTGCCTGCTGACCAAAGCCTCAC				3q42	PREDICTED: Rattus norvegicus nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 (predicted) (Nfatc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654261-S	ILMN_48292	IFRD2_PREDICTED	XM_217254.4	XM_217254.4		300994	109483871	XM_217254.4	Ifrd2_predicted	XP_217254.2	ILMN_1362035	0000780731	S	1527	CAAGGCCCGGAGTCGTGCAAGGGACAAGCGGGCGGATATCTTGTGAAGTA	8	+	112839503-112839548:112839549-112839552	8q32	PREDICTED: Rattus norvegicus interferon-related developmental regulator 2 (predicted) (Ifrd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664259-S	ILMN_53422	LOC498848	XM_574132.1	XM_574132.1		498848	62664259	XM_574132.1	LOC498848	XP_574132.1	ILMN_1359326	0002680059	S	2282	CCCTCGGGACCTCCTGTGCGATGATCCTTCTGTGGTTGTATGTGGCAATA				18p11	PREDICTED: Rattus norvegicus similar to protocadherin gamma B1 (LOC498848), mRNA.					
Rattus norvegicus	RefSeq	GI_62664588-S	ILMN_66167	RGD1565629_PREDICTED	XM_225862.4	XM_225862.4		307358	109506671	XM_225862.4	RGD1565629_predicted	XP_225862.4	ILMN_1363002	0004780082	S	171	ACGTGGACCTTCCGAGAGGAACCCGAGGACCGAGACAGAGAAGTGTGCTC	18	-	62731506-62731518:62731937-62731973	18q12.1	PREDICTED: Rattus norvegicus similar to collagen and calcium binding EGF domains 1 (predicted) (RGD1565629_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652402-A	ILMN_273591	ENPP2	NM_057104.2	NM_057104.2		84050	86439948	NM_057104.2	Enpp2	NP_476445.2	ILMN_1376810	0000050575	S	2669	AGCGAGATTTAACTTTCTGGGCCTGGGCAGTGTAGTCTTAGCAACTGGTG	7	-	91296088-91296137	7q31	Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 2 (Enpp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: H2O + 1-alkyl-sn-glycero-3-phosphoethanolamine = ethanol-amine + 1-alkyl-sn-glycerol 3-phosphate [goid 47391] [evidence IEA]	MGC93258	MGC93258
Rattus norvegicus	RefSeq	GI_62641754-S	ILMN_56738	MAP3K11	XM_219517.3	XM_219517.3		309168	62641754	XM_219517.3	Map3k11	XP_219517.3	ILMN_1650004	0003940554	S	2665	CCAAGAGCCCTCGGCGGGAAGAGACACGTGGTGAATTCTTAGGCTCTGTG				1q43	PREDICTED: Rattus norvegicus mitogen-activated protein kinase kinase kinase 11 (Map3k11), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]	Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence IDA]; The initiation of the activity of the inactive enzyme JUN kinase kinase (JNKK) activity in response to phosphorylation by a member of the JUN kinase kinase kinase (JNKKK) family, or another upstream kinase. JNKKs are involved in a signaling pathway that is primarily activated by cytokines and exposure to environmental stress [goid 7256] [evidence IDA]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of JUN kinase kinases (JNKKs) [goid 4706] [evidence IDA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IDA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases [goid 48365] [evidence IPI]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638440	ILMN_274044	SLC12A7	XM_001071999.1	XM_001071999.1		308069	109457694	XM_001071999.1	Slc12a7	XP_001071999.1	ILMN_1650629	0004060092	S	3204	CAACAAGTCCCAGGATGCTCAACTCGTCCTGCTGAATATGCCAGGCCCCC	1	-	30283800-30283849	1p11	PREDICTED: Rattus norvegicus solute carrier family 12 (potassium/chloride transporters), member 7 (Slc12a7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; Any process involved in maintaining the equilibrium of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell [goid 6884] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in) [goid 15379] [evidence TAS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638431-S	ILMN_274044	SLC12A7	XM_001071999.1	XM_001071999.1		308069	109457694	XM_001071999.1	Slc12a7	XP_001071999.1	ILMN_1368289	0005690594	S	3807	GGGATGCTCCAAGGAACGAAGAAGGCAGAAGCCAATGGAGAACCGCTCAG	1	-	30282022-30282071	1p11	PREDICTED: Rattus norvegicus solute carrier family 12 (potassium/chloride transporters), member 7 (Slc12a7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; Any process involved in maintaining the equilibrium of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell [goid 6884] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in) [goid 15379] [evidence TAS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758421-S	ILMN_276385	MAGI2	NM_053621.1	NM_053621.1		113970	16758421	NM_053621.1	Magi2	NP_446073.1	ILMN_1369780	0002450348	S	4658	GCAGGCAGACCTAAACTGATCCTAAAGCCCCCGGTTCCATGGTGGGAGCT	4	-	9909479-9909528	4q11	Rattus norvegicus membrane associated guanylate kinase, WW and PDZ domain containing 2 (Magi2), mRNA.	Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IPI]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any phosphatase [goid 19902] [evidence IEA]; Interacting selectively with any phosphatase [goid 19902] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any phosphatase [goid 19902] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15951562] [evidence IPI]; Interacting selectively with any phosphatase [goid 19902] [evidence IEA]	Acvrip1; Acvrinp1; S-SCAM	Acvrip1; Acvrinp1; S-SCAM
Rattus norvegicus	RefSeq	GI_62657145-S	ILMN_68911	LOC287736	XM_213491.3	XM_213491.3		287736	62657145	XM_213491.3	LOC287736	XP_213491.3	ILMN_1360266	0003440184	S	3194	CTCTAAGCAGAGGGAGGTGGGAGGGACAATCTCTGTGGACCCTTGGGAGG					PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC287736), mRNA.					
Rattus norvegicus	RefSeq	GI_62661043-A	ILMN_276779	SPETEX-2F	NM_001009968.1	NM_001009968.1		316940	58000418	NM_001009968.1	Spetex-2F	NP_001009968.1	ILMN_1376963	0001570056	S	354	GGAGCTCACGCAAGAGAACAATTCCTACCGCATCAGAAACTTCCAACTCC	15	+	5297836-5297865:5298309-5298328	15p16	Rattus norvegicus Spetex-2F protein (Spetex-2F), mRNA.					
Rattus norvegicus	RefSeq	GI_62659224-S	ILMN_266172	TMEM177	NM_001037776.1	NM_001037776.1		304735	83649748	NM_001037776.1	Tmem177	NP_001032865.1	ILMN_1356180	0003780086	S	821	GGCCCCATGAGCTTACGAGCTGCCTTCAACCTGGTGGCAATAGTGGTAGG	13	-	32689433-32689482	13q11	Rattus norvegicus transmembrane protein 177 (Tmem177), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC112654	MGC112654
Rattus norvegicus	RefSeq	GI_20806152-S	ILMN_278655	ATP5D	NM_139106.1	NM_139106.1		245965	20806152	NM_139106.1	Atp5d	NP_620806.1	ILMN_1363852	0006980717	S	513	TCCGGATCGAGGCCAATGAAGCCCTGGTGAAGGCCCTGGAGTAGGCGTAC	7	-	11073048-11073069:11073070-11073097	7q11	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit (Atp5d), nuclear gene encoding mitochondrial protein, mRNA.	The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled [goid 275] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient [goid 45259] [evidence TAS]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IEA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]	The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate [goid 6172] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6754] [evidence TAS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence TAS]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]	Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34877711-S	ILMN_54216	RGD1563825_PREDICTED	XM_240367.3	XM_240367.3		306366	109503261	XM_240367.3	RGD1563825_predicted	XP_240367.2	ILMN_1374388	0006200022	S	6416	CCGCACGAGCTGAACCAATAAACCACAGCTTGATCCTTCTCAGGGAGAGT	16	-	21507729-21507778	16p14	PREDICTED: Rattus norvegicus similar to ENSANGP00000020885 (predicted) (RGD1563825_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657311-S	ILMN_57048	LOC498022	XM_213514.3	XM_213514.3		498022	62657311	XM_213514.3	LOC498022	XP_213514.3	ILMN_1357232	0006450619	S	300	GTGTTAGTAGGAAGAACATCTTTGTTCGGCTGTTTCCCTCTGCGTGGCCC				10q32.2	PREDICTED: Rattus norvegicus similar to immunoglobulin superfamily, member 7 (LOC498022), mRNA.					
Rattus norvegicus	RefSeq	GI_62645017	ILMN_60511	RBM18_PREDICTED	XM_231176.4	XM_231176.4		311902	109468092	XM_231176.4	Rbm18_predicted	XP_231176.2	ILMN_1650556	0003710020	S	2188	CAGGAAACTCTTCCACTTGGGAGCTCGTTCAGGGAAGTGGGAACACCGGC	3	-	15227387-15227436	3p11	PREDICTED: Rattus norvegicus RNA binding motif protein 18 (predicted) (Rbm18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641223-S	ILMN_270302	RGD1311670_PREDICTED	XM_001079303.1	XM_001079303.1		293449	109462795	XM_001079303.1	RGD1311670_predicted	XP_001079303.1	ILMN_1352571	0000730041	S	2345	TGGCAAGGAAGGGACGGTGGAACAGAGGACGAAGGCCAACCCCAGAACAA				1q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A230074B11 gene (predicted) (RGD1311670_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641225-S	ILMN_270302	RGD1311670_PREDICTED	XM_001079303.1	XM_001079303.1		293449	109462795	XM_001079303.1	RGD1311670_predicted	XP_001079303.1	ILMN_1365735	0004150300	S	3091	AGGATGTGCAAGGGCTGTATCTCCTGACGGATGGGAAGCCAGACACAAGC				1q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A230074B11 gene (predicted) (RGD1311670_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651805-S	ILMN_60620	RGD1308796_PREDICTED	XM_234837.4	XM_234837.4		299566	109480302	XM_234837.4	RGD1308796_predicted	XP_234837.3	ILMN_1351176	0005390086	S	1496	TGAGCGTGGACCGAACCCGCAAGGTGCGGAGGAAGCCGGAGCTTATTCTA	7	+	13080023-13080072	7q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4732474A20 gene (predicted) (RGD1308796_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647625-S	ILMN_52452	DNAH6	XM_342709.2	XM_342709.2		117250	62647625	XM_342709.2	Dnah6	XP_342710.2	ILMN_1371510	0003520746	S	8969	TCAGAAACAGGCCTTTGGACTCCCAGAGAGGAAGAAGTTTGGCCCCCTGG				4q33	PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 6 (Dnah6), mRNA.					
Rattus norvegicus	RefSeq	GI_62664462-S	ILMN_302627	RGD1565083_PREDICTED	XR_007451.1	XR_007451.1		502166	109507303	XR_007451.1	RGD1565083_predicted		ILMN_2040104	0004010465	S	39	CCTTAAGAAAGGTAAGAGGGAAGGCCATGATGGTGAATGGAGGCAGAGGA				18q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1565083_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651198-S	ILMN_51929	LOC299356	XM_234584.3	XM_234584.3		299356	62651198	XM_234584.3	LOC299356	XP_234584.3	ILMN_1365324	0006290072	S	3191	GCCTGCAGACTCTCATCTAGTTCTGAGGGAGGAGAGCAAAAGAGGCCCCA				6q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4831426I19 (predicted) (LOC299356), mRNA.					
Rattus norvegicus	RefSeq	GI_62664377-S	ILMN_70411	RGD1561942_PREDICTED	XM_574144.2	XM_574144.2		498858	109506569	XM_574144.2	RGD1561942_predicted	XP_574144.1	ILMN_1354938	0004810091	S	1564	AGACTCTGGGCCACTTCTCCATATCCCACACAGGGCCATTCCAACCTGGC	18	-	40456084-40456101:40456506-40456537	18q11	PREDICTED: Rattus norvegicus similar to mutated in bladder cancer 1 (predicted) (RGD1561942_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661733-S	ILMN_58242	SLC25A30	XM_341357.2	XM_341357.2		361074	62661733	XM_341357.2	Slc25a30	XP_341358.1	ILMN_2038878	0000990025	S	900	GTTGTGGGCGATGTAGACAGGGCTGCAGTTAAGTATTGGAGCTTGGTTCC				15q11	PREDICTED: Rattus norvegicus solute carrier family 25, member 30 (Slc25a30), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638602-S	ILMN_57822	TTLL2_PREDICTED	XM_217869.4	XM_217869.4		292311	109457778	XM_217869.4	Ttll2_predicted	XP_217869.4	ILMN_1371933	0005360403	S	1212	GCACACTCGAACCTCCCAGCTCAGAGAGATGCTGTGCAGGCAGAACAAAC	1	-	47624026-47624075	1q11	PREDICTED: Rattus norvegicus tubulin tyrosine ligase-like family, member 2 (predicted) (Ttll2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645526	ILMN_283422	RGD1561276_PREDICTED	XM_001080264.1	XM_001080264.1		499857	109470493	XM_001080264.1	RGD1561276_predicted	XP_001080264.1	ILMN_1651111	0000450369	S	218	CTGTGAGCAATGACTCCCACCTCCACTTCCCTATGTACTTTTTGTTGGCC				3q34	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr1289 (predicted) (RGD1561276_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659642-S	ILMN_60636	RGD1560598_PREDICTED	XM_573493.2	XM_573493.2		498267	109498110	XM_573493.2	RGD1560598_predicted	XP_573493.2	ILMN_1373730	0002190736	S	582	ACAAGGGGCGACTGAAAAGGCTGGGAATCACCCACATCCTGAACGCTGCC	13	-	81835931-81835980	13q23	PREDICTED: Rattus norvegicus similar to C130085G02Rik protein (predicted) (RGD1560598_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659640-S	ILMN_60636	RGD1560598_PREDICTED	XM_573493.2	XM_573493.2		498267	109498110	XM_573493.2	RGD1560598_predicted	XP_573493.2	ILMN_1356492	0007100736	S	3409	TGGGCGTCAGTCCCAGTATCGGAGAAGCACAAACCGGCAAGAGGAAGAAG	13	-	81826982-81827031	13q23	PREDICTED: Rattus norvegicus similar to C130085G02Rik protein (predicted) (RGD1560598_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642734-S	ILMN_288047	SPZ1	NM_001024297.1	NM_001024297.1		499510	66730330	NM_001024297.1	Spz1	NP_001019468.1	ILMN_1364460	0002260288	S	1395	AGCCGCCACAAGCAGATCCAACTTGAGCCAAAACTGTTATCCACCCAGGG	2	-	22809525-22809574	2q12	Rattus norvegicus spermatogenic leucine zipper 1 (Spz1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576520-S	ILMN_278639	OLR878	NM_001000497.1	NM_001000497.1		304610	47576520	NM_001000497.1	Olr878	NP_001000497.1	ILMN_1368691	0001190538	S	656	TCATCAAGACAATTCTCAAGCTCCCTTCAGTCCAGCAAAGGACAAAGGCC	7	-	2388844-2388893	7q11	Rattus norvegicus olfactory receptor 878 (Olr878), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr878	Olr878
Rattus norvegicus	RefSeq	GI_16758449-S	ILMN_298285	LTB4R2	NM_053640.1	NM_053640.1		114098	16758449	NM_053640.1	Ltb4r2	NP_446092.1	ILMN_1369360	0003190079	S	541	CATCTGAGCCTGGAGACCCTGACTGCCTTCGTCCTGCCTTTTGGGACCGT	15	+	33924012-33924061	15p13	Rattus norvegicus leukotriene B4 receptor 2 (Ltb4r2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The directed movement of keratinocytes, epidermal cells which synthesize keratin, from one site to another [goid 51546] [evidence ISS]; The directed movement of keratinocytes, epidermal cells which synthesize keratin, from one site to another [goid 51546] [evidence IEA]	Combining with leukotriene B4, LTB4, to initiate a change in cell activity. Leukotriene B4 is also known as (6Z, 8E, 10E, 14Z)-(5S, 12R)-5,12-dihydroxyicosa-6,8,10,14-tetraen-1-oate [goid 1632] [evidence ISS]; Combining with leukotriene B4, LTB4, to initiate a change in cell activity. Leukotriene B4 is also known as (6Z, 8E, 10E, 14Z)-(5S, 12R)-5,12-dihydroxyicosa-6,8,10,14-tetraen-1-oate [goid 1632] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665600-S	ILMN_57252	LOC502411	XM_577892.1	XM_577892.1		502411	62665600	XM_577892.1	LOC502411	XP_577892.1	ILMN_1354130	0000430368	S	604	ACGTGGAAAGGACCTGCGTGGGGTGGCTCGACAGATACTTGGAGAACGGA				20p12	PREDICTED: Rattus norvegicus similar to Mature alpha chain of major histocompatibility complex class I antigen (LOC502411), mRNA.					
Rattus norvegicus	RefSeq	GI_62648348-S	ILMN_280699	RGD1310606	NM_001024984.1	NM_001024984.1		297728	68163398	NM_001024984.1	RGD1310606	NP_001020155.1	ILMN_1354609	0000460458	S	582	GGCAATCCCACATCCTCGAGGGCATGCACATTTGGCAGCACTTGTCAACC	4	-	185806432-185806481	4q44	Rattus norvegicus similar to RIKEN cDNA 1200009B18; EST AA408438 (RGD1310606), mRNA.					
Rattus norvegicus	RefSeq	GI_62645580-S	ILMN_65759	SRP14_PREDICTED	XM_215815.4	XM_215815.4		296076	109468652	XM_215815.4	Srp14_predicted	XP_215815.3	ILMN_1361542	0005050438	S	489	TTCACGGAAGGGTCTATTAAGAGAGAAGGGTTGGGATGGCCATAGGCTAG	3	-	104907140-104907189	3q35	PREDICTED: Rattus norvegicus signal recognition particle 14 (predicted) (Srp14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605985-A	ILMN_302544	TAAR2	NM_001008512.1	NM_001008512.1		294121	56605985	NM_001008512.1	Taar2	NP_001008512.1	ILMN_1376890	0005390458	S	582	CAAGCTCTGGGGGACCACCTTATTTGTGGCGGGCTTTTTTACTCCGAGCT	1	-	22028300-22028349	1p12	Rattus norvegicus trace amine-associated receptor 2 (Taar2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Taar2	Taar2
Rattus norvegicus	RefSeq	GI_47576570-S	ILMN_302864	OLR164	NM_001000737.1	NM_001000737.1		404998	47576570	NM_001000737.1	Olr164	NP_001000737.1	ILMN_1371890	0001090452	S	503	TTCCGTACTGCAAGGGCAATGTCATCCCCCACACCTACTGTGACCACATA	1	+	162392988-162393037	1q33	Rattus norvegicus olfactory receptor 164 (Olr164), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr164	Olr164
Rattus norvegicus	RefSeq	GI_16758275-S	ILMN_300918	LIN7A	NM_053514.1	NM_053514.1		85327	16758275	NM_053514.1	Lin7a	NP_445966.1	ILMN_1350398	0007040022	S	403	GGCCTCAAAAGAGGAGACCAGTTGCTATCAGTGAACGGAGTGAGCGTGGA	7	+	46080881-46080922:46116774-46116781	7q21	Rattus norvegicus lin-7 homolog a (C. elegans) (Lin7a), mRNA.	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16192269] [evidence IPI]	Veli1	Veli1
Rattus norvegicus	RefSeq	GI_62640792-S	ILMN_54421	NMB_PREDICTED	XM_218815.4	XM_218815.4		308751	109458986	XM_218815.4	Nmb_predicted	XP_218815.4	ILMN_1372701	0002680048	S	1486	TCTCTAGGAGCCTTGCCTGTCCAAGTCTATCAGCAGACTGTGTTCCTGTC	1	-	137088290-137088339	1q31	PREDICTED: Rattus norvegicus neuromedin B (predicted) (Nmb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717750-S	ILMN_271185	LOC689058	XM_001069354.1	XM_001069354.1		689058	109513298	XM_001069354.1	LOC689058	XP_001069354.1	ILMN_1354817	0002760500	S	114	CTGGGGAATGTCGAATGCTGGGAGAGAAACATCATCCCCTGGAACTGCCC	Un|NW_047875.1	+	49480-49493:80244-80279		PREDICTED: Rattus norvegicus hypothetical protein LOC689058 (LOC689058), mRNA.					
Rattus norvegicus	RefSeq	GI_62653947-S	ILMN_292191	MIZF_PREDICTED	XR_008376.1	XR_008376.1		300665	109484598	XR_008376.1	Mizf_predicted		ILMN_1367797	0003610048	S	1592	CAGATGCCCAAGGCCAGCGAGACCTTGTCTACTATGTGCTGTCCGAAGCC				8q22	PREDICTED: Rattus norvegicus MBD2-interacting zinc finger (predicted) (Mizf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659345-S	ILMN_63148	LOC289038	XM_222652.3	XM_222652.3		289038	62659345	XM_222652.3	LOC289038	XP_222652.3	ILMN_1371838	0006420079	S	2256	CATGTTTGCCCCCAGGCCTGTGACAGTTTGACTGCTGAACCCCATGAGGT				13q13	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (predicted) (LOC289038), mRNA.					
Rattus norvegicus	RefSeq	GI_62648705-S	ILMN_59800	LOC361942	XM_342241.2	XM_342241.2		361942	62648705	XM_342241.2	LOC361942	XP_342242.2	ILMN_1369444	0002360048	S	760	CGGACACAGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATG					PREDICTED: Rattus norvegicus similar to ORF4 (LOC361942), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646067-S	ILMN_293735	TPX2_PREDICTED	XM_001060351.1	XM_001060351.1		311546	109471045	XM_001060351.1	Tpx2_predicted	XP_001060351.1	ILMN_1355984	0006420010	S	2385	CTGACCGTGCCGGTGTCTCCTAAGTTCTCCACTCGGTTCCAGTAGAAGCC				3q41	PREDICTED: Rattus norvegicus TPX2, microtubule-associated protein homolog (Xenopus laevis) (predicted), transcript variant 2 (Tpx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50511335-S	ILMN_279619	MRGPRB4	NM_001002287.1	NM_001002287.1		404658	50511335	NM_001002287.1	Mrgprb4	NP_001002287.1	ILMN_1361593	0002680647	S	573	CATGGTTCTTTTTGTGTCCAGCCTAGCCCTCTTGGCCAAAATCATCTGTG	1	-	97967724-97967773	1q22	Rattus norvegicus MAS-related GPR, member B4 (Mrgprb4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]	MrgB4	MrgB4
Rattus norvegicus	RefSeq	GI_62648971-S	ILMN_284263	SEC61B_PREDICTED	XM_001056613.1	XM_001056613.1		298068	109476492	XM_001056613.1	Sec61b_predicted	XP_001056613.1	ILMN_1373509	0000380541	S	186	ATCCACTGTCCGGCAGAGAAAAAATGCCAGCTGCGGAACCCGGAGTGCAG				5q22	PREDICTED: Rattus norvegicus Sec61 beta subunit (predicted) (Sec61b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641847-S	ILMN_61501	LOC309197	XM_219560.3	XM_219560.3		309197	62641847	XM_219560.3	LOC309197	XP_219560.3	ILMN_1367563	0005860692	S	3063	AGCTGGATTGGTAGCCCAGTAAGGGAGAGTGGTGTGGGGAGAAGGGGAAC				1q43	PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC309197), mRNA.					
Rattus norvegicus	RefSeq	GI_6981619-S	ILMN_293911	SYK	NM_012758.1	NM_012758.1		25155	6981619	NM_012758.1	Syk	NP_036890.1	ILMN_1350279	0001170398	S	4982	TCAGCAGAGCACACGGAGCACCTAATCTGCCTCGCCACATCCTACTGACC	17	-	18440966-18441015	17p14	Rattus norvegicus spleen tyrosine kinase (Syk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A membrane-bound antigen receptor complex consisting in its basic form of an antigen-binding subunit (the membrane immunoglobulin or mIg), comprised of two identical heavy chains and two identical light chains held together by disulfide bonds, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins [goid 19815] [evidence IEA]; A membrane-bound antigen receptor complex consisting in its basic form of an antigen-binding subunit (the membrane immunoglobulin or mIg), comprised of two identical heavy chains and two identical light chains held together by disulfide bonds, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins [goid 19815] [evidence ISS]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence IEA]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells [goid 1820] [evidence IEA]; The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells [goid 1820] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase [goid 7167] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence IEA]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence IEA]; The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid [goid 19370] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mast cell degranulation [goid 43306] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of mast cell degranulation [goid 43306] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of mast cell degranulation [goid 43306] [evidence ISS]; The process by which successful recombination of a T cell receptor beta chain into a translatable protein coding sequence leads to rescue from apoptosis and subsequent proliferation of an immature T cell [goid 43366] [evidence IEA]; The process by which successful recombination of a T cell receptor beta chain into a translatable protein coding sequence leads to rescue from apoptosis and subsequent proliferation of an immature T cell [goid 43366] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-3 [goid 45401] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-3 [goid 45401] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of granulocyte macrophage colony-stimulating factor [goid 45425] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of granulocyte macrophage colony-stimulating factor [goid 45425] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation [goid 45588] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation [goid 45588] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell differentiation [goid 46638] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell differentiation [goid 46638] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence IEA]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell [goid 50853] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence ISS];  [goid 4716] [evidence IEA];  [goid 4716] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	p72syk	p72syk
Rattus norvegicus	RefSeq	GI_56912224-S	ILMN_297941	CIAO1	NM_001008766.1	NM_001008766.1		29231	56912224	NM_001008766.1	Ciao1	NP_001008766.1	ILMN_1371241	0001940273	S	1026	GCTCCTGGCCTCTTGTAGTGATGATGGGGAGGTAGCCTTCTGGGAGTATC	3	-	114741030-114741079	3q36	Rattus norvegicus cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae) (Ciao1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Ciao1; MGC95143	Ciao1; MGC95143
Rattus norvegicus	RefSeq	GI_62648234-S	ILMN_58930	LOC500339	XM_575690.1	XM_575690.1		500339	62648234	XM_575690.1	LOC500339	XP_575690.1	ILMN_1353284	0005270541	S	74	AGAGGAGACTCAGAGGCCTAGAAAAGCTGGAAACAGAGAAATGCTGAGAG					PREDICTED: Rattus norvegicus similar to killer cell lectin-like receptor subfamily A, member 22 (LOC500339), mRNA.					
Rattus norvegicus	RefSeq	GI_56605665-S	ILMN_278451	PSMD3	NM_001008281.1	NM_001008281.1		287670	56605665	NM_001008281.1	Psmd3	NP_001008282.1	ILMN_1372409	0001940239	S	2017	CATGGATTAGGGTGTGGACTAGGGCCTGGAGTTGGGGCACATTGGGTTCT	10	+	87468279-87468328	10q31	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 (Psmd3), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the activity of an enzyme [goid 30234] [evidence IEA]	MGC94658	MGC94658
Rattus norvegicus	RefSeq	GI_62660011-S	ILMN_271154	LOC689403	XM_001070665.1	XM_001070665.1		689403	109499321	XM_001070665.1	LOC689403	XP_001070665.1	ILMN_1375036	0003850411	S	1708	GTTCTGGAGGTTTTCTCCATCTTGGCTTCTAGTGCAGGGTTGCTTGGGTG	14	+	57225-57274	14p22	PREDICTED: Rattus norvegicus similar to vomeronasal 2, receptor, 2 (LOC689403), mRNA.					
Rattus norvegicus	RefSeq	GI_62665816-S	ILMN_294917	RGD1563108_PREDICTED	XM_001079415.1	XM_001079415.1		365546	109509903	XM_001079415.1	RGD1563108_predicted	XP_001079415.1	ILMN_1355087	0001230373	S	50	TGGACATCCTGGCGGAGGTGGTCCCTTTGGATGGAGCTACAAGTGGGATC				20p12	PREDICTED: Rattus norvegicus similar to chromosome 21 open reading frame 29 (predicted) (RGD1563108_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666791-S	ILMN_275132	RGD1561555_PREDICTED	XM_001067159.1	XM_001067159.1		501552	109511695	XM_001067159.1	RGD1561555_predicted	XP_001067159.1	ILMN_1370146	0002810138	S	2696	GGGCCACGACTTTTTCAGGGAGAAGGGCCAAAATCCGTCACTACAAGCGC				Xq21	PREDICTED: Rattus norvegicus similar to CDNA sequence BC022692 (predicted) (RGD1561555_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651784-S	ILMN_272044	RGD1561354_PREDICTED	XM_001077443.1	XM_001077443.1		500798	109481634	XM_001077443.1	RGD1561354_predicted	XP_001077443.1	ILMN_1372674	0000670402	S	1326	GCTGGCCCTCAGAATCAAGGTGGTCAATAAGGGTAGCAGCCTCAAGCGGG				7q11	PREDICTED: Rattus norvegicus RGD1561354 (predicted) (RGD1561354_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663297-S	ILMN_286094	RGD1566133_PREDICTED	XM_001054815.1	XM_001054815.1		361219	109505513	XM_001054815.1	RGD1566133_predicted	XP_001054815.1	ILMN_1358797	0001170041	S	1479	GTTGGCTCTAGGGAAAGAACTAGCAAGGTGCCCGCTGCCTTCTCACAGTG				17p14	PREDICTED: Rattus norvegicus similar to Fbxw17 protein (predicted) (RGD1566133_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663295-S	ILMN_286094	RGD1566133_PREDICTED	XM_001054815.1	XM_001054815.1		361219	109505513	XM_001054815.1	RGD1566133_predicted	XP_001054815.1	ILMN_1374294	0006520162	S	576	CAGCTTACCCACTTCCTGTTCTTCAATGGAGGCCTGCGACCACCCAGAGG				17p14	PREDICTED: Rattus norvegicus similar to Fbxw17 protein (predicted) (RGD1566133_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.14700	ILMN_160582	RN.14700	Rn.14700		Rn.14700		49578027	CO396111			ILMN_1530326	0005700128	S	510	GACAATTCCTCTGTTTACATTTTGGTTTGACTTTTGATTACTTTGGTTAT					AGENCOURT_26756519 NIH_MGC_255 Rattus norvegicus cDNA clone IMAGE:7319566 5', mRNA					
Rattus norvegicus	RefSeq	GI_62655035	ILMN_270673	RGD1565371_PREDICTED	XM_001063205.1	XM_001063205.1		501140	109487092	XM_001063205.1	RGD1565371_predicted	XP_001063205.1	ILMN_1650254	0004120021	S	1262	GGGTGGGCAGTTGCGTTACGCCTTTATCTCTCTGCTGAGTGAAGTCTACG				9q22	PREDICTED: Rattus norvegicus similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3 (predicted) (RGD1565371_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651461-S	ILMN_273943	RTL1_PREDICTED	XM_001070232.1	XM_001070232.1		314581	109479979	XM_001070232.1	Rtl1_predicted	XP_001070232.1	ILMN_1366739	0006220292	S	4245	AGATTTCCTCAACAACCGGCTACTCTACACCCTTGGCTCCGATGGCCGCC				6q32	PREDICTED: Rattus norvegicus retrotransposon-like 1 (predicted) (Rtl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654820-S	ILMN_53762	DST_PREDICTED	XM_237042.4	XM_237042.4		316313	109485919	XM_237042.4	Dst_predicted	XP_237042.4	ILMN_1368635	0003870300	S	22042	AGGTTCTCGGCCATCCACAGCCAAGCCTTCTAAAATCCCCACGCCCCAGA	9	+	33050131-33050180	9q21	PREDICTED: Rattus norvegicus dystonin (predicted) (Dst_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654039-S	ILMN_291879	RGD1561944_PREDICTED	XR_008028.1	XR_008028.1		501027	109485074	XR_008028.1	RGD1561944_predicted		ILMN_1357318	0006130725	S	143	GGCAGAAACCCAGAGGTATCGACAACAGGGTGCAGAGAAGAGTCAAGGGC				8q31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L32 (predicted) (RGD1561944_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556932-S	ILMN_278957	RNASEH1	NM_001013097.1	NM_001013097.1		298933	61556932	NM_001013097.1	Rnaseh1	NP_001013115.1	ILMN_1369339	0006290088	S	991	GAGTCCCGCCTCCGTGAGATTTCAGATTAGTGTCTTTCGGGTCTGTCCTA	6	+	46537591-46537640	6q16	Rattus norvegicus ribonuclease H1 (Rnaseh1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters [goid 4523] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC108918	MGC108918
Rattus norvegicus	RefSeq	GI_13928883-S	ILMN_68024	KLF6	NM_031642.2	NM_031642.2		58954	67514560	NM_031642.2	Klf6	NP_113830.1	ILMN_1362080	0006590315	S	1070	AGGCGGCCATGGAAGGAGGGATACCTGTACCAGCCAAAGCATGCCATTGC	17	-	75579163-75579212	17q12.2	Rattus norvegicus Kruppel-like factor 6 (Klf6), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	CPBP; Copeb; Zf9	CPBP; Copeb; Zf9
Rattus norvegicus	RefSeq	GI_47155570-S	ILMN_284877	BTLA	NM_213630.1	NM_213630.1		407756	47155570	NM_213630.1	Btla	NP_998795.1	ILMN_1357632	0001500139	S	845	GTGTTATTGGAAGGACCCCAAGACAGGCAAGCAAGATTCAGGAGGCACCC	11	-	57102036-57102085	11q21	Rattus norvegicus B and T lymphocyte associated (Btla), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell capable of activating, perpetuating, or inhibiting an immune response [goid 2768] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of alpha-beta T cell proliferation [goid 46642] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718494-S	ILMN_271031	LOC680294	XR_005695.1	XR_005695.1		680294	109513700	XR_005695.1	LOC680294		ILMN_1369576	0003520403	S	363	CCTCAAACTGAAGGCAGACGAGGCCCGCAAGAAGCTACAGGCTGACCAGC	Un|NW_047906.1	+	912238-912287		PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC680294), mRNA.					
Rattus norvegicus	RefSeq	GI_62664180-S	ILMN_269474	LOC688637	XM_001067706.1	XM_001067706.1		688637	109506417	XM_001067706.1	LOC688637	XP_001067706.1	ILMN_1363581	0004590168	S	2504	GGACGGCGGGTCAATAGAGGCCATGCGGAGCTTTTTGAGTATGATCGGGG	18	+	25320988-25321037	18p12	PREDICTED: Rattus norvegicus similar to WD repeat domain 36 (LOC688637), mRNA.	A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins [goid 32040] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_27706617-S	ILMN_54525	TMEM15_PREDICTED	XM_231121.2	XM_231121.2		311847	109467993	XM_231121.2	Tmem15_predicted	XP_231121.1	ILMN_1366390	0002760528	S	1624	TATGCTGGGGTCCTGGCTGTGGGTGTGGGCGATACTGTGGCCTCCATATT	3	-	9330054-9330103	3p12	PREDICTED: Rattus norvegicus transmembrane protein 15 (predicted) (Tmem15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667483-S	ILMN_65018	LOC317593	XM_229162.2	XM_229162.2		317593	62667483	XM_229162.2	LOC317593	XP_229162.2	ILMN_1374406	0002850538	S	1728	CCTGAGGTGGCTGAGTGGTTTGAGGGCGTGCAGGAAGTACATGAAGAGTT				Xq36	PREDICTED: Rattus norvegicus similar to melanoma antigen family A, 10 (LOC317593), mRNA.					
Rattus norvegicus	RefSeq	GI_62639292-S	ILMN_289686	CAPN12_PREDICTED	XM_001078527.1	XM_001078527.1		308476	109461597	XM_001078527.1	Capn12_predicted	XP_001078527.1	ILMN_1366992	0001990537	S	2130	GATGCTTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGACTGC				1q21	PREDICTED: Rattus norvegicus calpain 12 (predicted) (Capn12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644725-S	ILMN_283098	RGD1563595_PREDICTED	XM_001077558.1	XM_001077558.1		499751	109469546	XM_001077558.1	RGD1563595_predicted	XP_001077558.1	ILMN_1372599	0002900524	S	1810	CCGCGTCACAAAAGACCGCAAGTACCAAGACTGGGGCTGGGAAATCCTGC				3p13	PREDICTED: Rattus norvegicus similar to Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (ER alpha-1,2-mannosidase) (predicted) (RGD1563595_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650485	ILMN_283451	LOC686255	XM_001073123.1	XM_001073123.1		686255	109479153	XM_001073123.1	LOC686255	XP_001073123.1	ILMN_1650548	0005420025	S	127	CCTTCATGATGACAGCTTTGCGTCCGAAGTAACGTCCAGCCAGGACCAGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (LOC686255), mRNA.					
Rattus norvegicus	RefSeq	GI_56090286-S	ILMN_270885	PRSS23	NM_001007691.1	NM_001007691.1		308807	56090286	NM_001007691.1	Prss23	NP_001007692.1	ILMN_1367752	0004070403	S	1248	CTTGCCAGCACCGATGGTCGTTTTGCACTCATTGTAGGAGAGAGGCCAGC	1	-	146082108-146082157	1q32	Rattus norvegicus protease, serine, 23 (Prss23), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	MGC94216	MGC94216
Rattus norvegicus	RefSeq	GI_62663142-S	ILMN_65454	LOC498687	XM_573972.1	XM_573972.1		498687	62663142	XM_573972.1	LOC498687	XP_573972.1	ILMN_1354390	0003850341	S	11	CCAGCAGCCGATTTTTCTGAGTTGCTTAGCGGGCTTGAATGATTGGCCTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 8430426H19 (LOC498687), mRNA.					
Rattus norvegicus	RefSeq	GI_62718796-S	ILMN_62856	LOC501479	XM_580198.1	XM_580198.1		501479	62718796	XM_580198.1	LOC501479	XP_580198.1	ILMN_1364661	0001340040	S	961	CAGCTCCTCGCCATTCTGACAAGCAAACAAAAGGGAAGGCAAAGGACCTG					PREDICTED: Rattus norvegicus LOC501479 (LOC501479), mRNA.					
Rattus norvegicus	RefSeq	GI_62644798	ILMN_49426	RPL7A_PREDICTED	XM_216024.4	XM_216024.4		296596	109506315	XM_216024.4	Rpl7a_predicted	XP_216024.4	ILMN_1650777	0001850647	S	598	GCGCCTGGTCCACAGGAAGACATGCACCACTGTTGCCTTCACACAGGTGA	18	-	4281750-4281799	18p13	PREDICTED: Rattus norvegicus ribosomal protein L7a (predicted) (Rpl7a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649502-S	ILMN_287455	CC2D1B	XM_001067280.1	XM_001067280.1		313478	109476982	XM_001067280.1	Cc2d1b	XP_001067280.1	ILMN_1371928	0006900176	S	2625	GCTGCGGGAGCCTTTGAGCAGCCAGGACGTGCAGATGGTCACTGAGAACT				5q35	PREDICTED: Rattus norvegicus coiled-coil and C2 domain containing 1B (Cc2d1b), mRNA.					
Rattus norvegicus	RefSeq	GI_47576748-S	ILMN_300521	OLR838	NM_001000581.1	NM_001000581.1		366362	47576748	NM_001000581.1	Olr838	NP_001000581.1	ILMN_1358956	0006350722	S	487	GCTGTGCAGTTGCCTTTCTGTGGGGACAATATCATCAACCACTTCACCTG	5	-	60280911-60280960	5q22	Rattus norvegicus olfactory receptor 838 (Olr838), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr838	Olr838
Rattus norvegicus	RefSeq	GI_62663731-S	ILMN_65008	RGD1561493_PREDICTED	XM_574061.2	XM_574061.2		498775	109505129	XM_574061.2	RGD1561493_predicted	XP_574061.2	ILMN_1353097	0006220017	S	1627	CCTTGCAGGCTGTTCTGGAGATACCTGGCAGAGAGAGACAGTTGTGGACG	17	-	68035062-68035111	17q12.1	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (predicted) (RGD1561493_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641530-S	ILMN_292758	ADAM12_PREDICTED	XM_001055685.1	XM_001055685.1		309072	109463064	XM_001055685.1	Adam12_predicted	XP_001055685.1	ILMN_1369174	0002650121	S	3165	CGCCGTAGCAGGCATTTGTGCCATCACGGGGCTTTTCTACAGAAGGAAGG					PREDICTED: Rattus norvegicus a disintegrin and metallopeptidase domain 12 (meltrin alpha) (predicted) (Adam12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644888-S	ILMN_288085	LCN9_PREDICTED	XM_001078088.1	XM_001078088.1		296578	109469606	XM_001078088.1	Lcn9_predicted	XP_001078088.1	ILMN_1349931	0000430066	S	300	CTCCATTGCCTATGAGGGGGAAAACAAGGTGCTGCTCGTGGAGACTGACT				3p13	PREDICTED: Rattus norvegicus lipocalin 9 (predicted) (Lcn9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659522-S	ILMN_54837	LOC497689	XM_579556.1	XM_579556.1		497689	62659522	XM_579556.1	LOC497689	XP_579556.1	ILMN_1368927	0001410309	S	1855	GCTGACCCGCAGTGAGCATAAGTCATTTCTCCTTAAGTTCCACTAACAAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053433 (LOC497689), mRNA.					
Rattus norvegicus	RefSeq	GI_62662424-S	ILMN_276128	LOC498606	NM_001025143.1	NM_001025143.1		498606	68341928	NM_001025143.1	LOC498606	NP_001020314.1	ILMN_1353690	0001990670	S	1040	GCCTTGACTGTGAGGAGCTGTGTTTCTCCAAGGTCCATCAGGTTATCTCC	16	+	19422858-19422907	16p14	Rattus norvegicus hypothetical protein LOC498606 (LOC498606), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662160-S	ILMN_281922	RGD1565237_PREDICTED	XM_001055324.1	XM_001055324.1		498576	109503669	XM_001055324.1	RGD1565237_predicted	XP_001055324.1	ILMN_1351858	0002320022	S	1999	CACTGGGCCAGCTGACTCTTACTCATACCTGGAGAATCAGCATGCAGGCC				16p16	PREDICTED: Rattus norvegicus similar to transmembrane protein (predicted) (RGD1565237_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650526-S	ILMN_287627	OACT2	XM_001074910.1	XM_001074910.1		313997	109479200	XM_001074910.1	Oact2	XP_001074910.1	ILMN_1373404	0000460707	S	2214	TCTGGGAGCTTAATTACCTGGTGTCAGTCAGGGGGCCCTTCCAGGAGGAC				6q16	PREDICTED: Rattus norvegicus O-acyltransferase (membrane bound) domain containing 2 (Oact2), mRNA.					
Rattus norvegicus	RefSeq	GI_62660007-S	ILMN_264660	LOC685669	XM_001064768.1	XM_001064768.1		685669	109506384	XM_001064768.1	LOC685669	XP_001064768.1	ILMN_1358889	0000840026	S	3	GACATCCACGAACAAAGGCGGTGAGGCGAAGAAACAGGGGGTGAGCAGGA	18	-	18681493-18681542	18p12	PREDICTED: Rattus norvegicus hypothetical protein LOC685669 (LOC685669), mRNA.					
Rattus norvegicus	RefSeq	GI_27714426-S	ILMN_280722	RGD1309291_PREDICTED	XR_007298.1	XR_007298.1		298051	109476451	XR_007298.1	RGD1309291_predicted		ILMN_1357272	0004730128	S	1668	TGGCTGTGAATCAACCTACAGGGTGGCATCTTTGAGCCCAGTCCACCGCG				5q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930547C10 (predicted) (RGD1309291_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_14389296-S	ILMN_274679	RPL19	NM_031103.1	NM_031103.1		81767	14389296	NM_031103.1	Rpl19	NP_112365.1	ILMN_2040275	0002640678	S	260	ATAGGGAAGAGGAAGGGTACTGCCAACGCTCGGATGCCCGAGAAGGTGAC	10	+	86790285-86790288:86791026-86791071	10q31	Rattus norvegicus ribosomal protein L19 (Rpl19), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22625] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645170-S	ILMN_67929	LOC499804	XM_575144.1	XM_575144.1		499804	62645170	XM_575144.1	LOC499804	XP_575144.1	ILMN_1359946	0004810133	S	788	CTCACCACCTCATGCTACTTTGTCCGAAACTGACCATATAATGAGGCAGA					PREDICTED: Rattus norvegicus similar to LRRGT00150 (LOC499804), mRNA.					
Rattus norvegicus	RefSeq	GI_56605831-S	ILMN_264882	TSPAN31	NM_001008378.1	NM_001008378.1		362890	56605831	NM_001008378.1	Tspan31	NP_001008379.1	ILMN_1357395	0005290167	S	1091	CCTAGAAGCACAGGTGGCTGATGGGAGCCTTTCATAACTGTTTTCCTTCC	7	-	67019481-67019530	7q22	Rattus norvegicus tetraspanin 31 (Tspan31), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			Sas; MGC105551	Sas; MGC105551
Rattus norvegicus	RefSeq	GI_6978860-S	ILMN_278489	FUCA	NM_012562.1	NM_012562.1		24375	6978860	NM_012562.1	Fuca	NP_036694.1	ILMN_1355282	0004010112	S	1392	GTGAACTGATCGCAGGAGCTCAAGGATAGAGGGCCCAGTGTGCTGCTGTC	5	+	154720884-154720892:154720893-154720933	5q36	Rattus norvegicus fucosidase, alpha-L- 1, tissue (Fuca), mRNA.				Fuca1	Fuca1
Rattus norvegicus	RefSeq	GI_62659609-S	ILMN_59132	RGD1308992_PREDICTED	XM_341142.3	XM_341142.3		360866	109498115	XM_341142.3	RGD1308992_predicted	XP_341143.3	ILMN_1363491	0002230056	S	2701	GCTGCAACAGAAATGACCGAGGGAGAGGCTGAAGGCTGGGAAGGAGAAGA	13	+	79709625-79709645:79710390-79710418	13q22	PREDICTED: Rattus norvegicus similar to ezrin-binding partner PACE-1 (predicted) (RGD1308992_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036682-S	ILMN_271035	RELA	NM_199267.2	NM_199267.2		309165	51036682	NM_199267.2	Rela	NP_954888.1	ILMN_1351933	0005890064	S	2128	GCCCCCATGAGGTCTGCCTGACACCAGCATTTGAGGGGCCACTTTTCTGT	1	+	208272833-208272882	1q43	Rattus norvegicus v-rel reticuloendotheliosis viral oncogene homolog A (avian) (Rela), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of Schwann cell differentiation [goid 14040] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation [goid 32332] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalamin (vitamin B12) stimulus [goid 33590] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with phosphate [goid 42301] [evidence ISS]; Interacting selectively with phosphate [goid 42301] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence IEA]	NFkB	NFkB
Rattus norvegicus	RefSeq	GI_12621137-S	ILMN_56357	SERPINA5	NM_022957.2	NM_022957.2		65051	67514563	NM_022957.2	Serpina5	NP_075246.2	ILMN_1363093	0000540348	S	1661	GCTCTGCAAGAGGCTGGTCAGCATAGATAAAGGCCACCAGGAAGCACGGT	6	+	128160875-128160924	6q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A, member 5 (Serpina5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process that modulates the frequency, rate or extent of blood coagulation [goid 30193] [evidence NAS]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IDA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence NAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IDA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities [goid 32190] [evidence ISS]; Interacting selectively with acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities [goid 32190] [evidence IEA]	Pci; MGC93420	Pci; MGC93420
Rattus norvegicus	RefSeq	GI_51948423-S	ILMN_277367	RGD1303130	NM_001004226.1	NM_001004226.1		295231	51948423	NM_001004226.1	RGD1303130	NP_001004226.1	ILMN_1351171	0004850440	S	1396	CCGAACCCACGGGAAGGCTACGATTACTGGTCCCCCACATTCCCATTTCC	2	+	180441485-180441534	2q34	Rattus norvegicus kidney predominant protein NCU-G1 (RGD1303130), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			0610031j06rik; MGC94430	0610031j06rik; MGC94430
Rattus norvegicus	RefSeq	GI_62644788-S	ILMN_49026	LOC499761	XM_231041.3	XM_231041.3		499761	62644788	XM_231041.3	LOC499761	XP_231041.3	ILMN_1363593	0005550731	S	955	AGAGGACCAGGCCAATGGTATTGAGGCTGTGTGGCATGACGAGAGCCATT					PREDICTED: Rattus norvegicus similar to N-acetylgalactosaminyltransferase A blood group-like enzyme (LOC499761), mRNA.					
Rattus norvegicus	RefSeq	GI_62650818-S	ILMN_274273	RGD1565002_PREDICTED	XM_001080634.1	XM_001080634.1		299135	109479512	XM_001080634.1	RGD1565002_predicted	XP_001080634.1	ILMN_1370821	0005860450	S	1247	CATTGTGGAAGCCAAAGAGGGATTGAAAGAGCCACCAGGGATGACTGAGC				6q24	PREDICTED: Rattus norvegicus similar to Dehydrogenase/reductase SDR family member 7 precursor (Retinal short-chain dehydrogenase/reductase 4) (predicted) (RGD1565002_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21630290-S	ILMN_265019	ASNS	NM_013079.1	NM_013079.1		25612	21630290	NM_013079.1	Asns	NP_037211.1	ILMN_1368636	0006380088	S	1980	CCAGTGCGGCCTTGTAGCTAGAGACTGAGTGGCTCTTGCTGTATTGCCAC	4	-	32758795-32758844	4q21	Rattus norvegicus asparagine synthetase (Asns), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEP]; The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid [goid 6529] [evidence IEA]; The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose [goid 42149] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence IEA]; Any process that activates or increases the rate or extent of progression through the mitotic cell cycle [goid 45931] [evidence ISS]	Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate [goid 4066] [evidence TAS]; Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate [goid 4066] [evidence IEA]; Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate [goid 4066] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	MGC93148	MGC93148
Rattus norvegicus	RefSeq	GI_62667509-S	ILMN_267338	LOC679081	XM_001054613.1	XM_001054613.1		679081	109462292	XM_001054613.1	LOC679081	XP_001054613.1	ILMN_2040930	0000780754	S	116	CCCAAGTTGGGAAGAAGGAGGAGAAATCGAAATTTAAGGTCAAGGTAACT					PREDICTED: Rattus norvegicus hypothetical protein LOC679081 (LOC679081), mRNA.					
Rattus norvegicus	RefSeq	GI_34855360-S	ILMN_265392	BCKDHA	NM_012782.1	NM_012782.1		25244	77736547	NM_012782.1	Bckdha	NP_036914.1	ILMN_1371691	0004670017	S	1291	GCACCTGCAGACCTACGGGGAGCACTACCCCCTGGACCACTTTGACAAGT	1	-	80838223-80838272	1q21	Rattus norvegicus branched chain ketoacid dehydrogenase E1, alpha polypeptide (Bckdha), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity [goid 5947] [evidence ISS]; Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity [goid 5947] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ];  [goid 3826] [evidence ISS];  [goid 3826] [evidence TAS];  [goid 3826] [evidence ISS]; Catalysis of the reaction: 3-methyl-2-oxobutanoate + lipoamide = S-(2-methylpropanoyl)dihydrolipoamide + CO2 [goid 3863] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of cyclin-dependent protein kinase 5 activator [goid 16536] [evidence IEA]; Modulation of the activity of cyclin-dependent protein kinase 5 activator [goid 16536] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide [goid 16624] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: NAD+ + CoA + 2-keto-isovalerate = NADH + CO2 + isobutyryl-CoA [goid 47101] [evidence TAS]	BCKDA; E1a	BCKDA; E1a
Rattus norvegicus	RefSeq	GI_62650226-A	ILMN_296998	STRN	NM_019148.1	NM_019148.1		29149	9507156	NM_019148.1	Strn	NP_062021.1	ILMN_1376523	0000360170	S	3406	GTCAGCTCTGCGGCTGTGTGTGCTCTACTAACCCCACTGTGTAGAAGGAG				6q11	Rattus norvegicus striatin, calmodulin binding protein (Strn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence NAS]		
Rattus norvegicus	RefSeq	GI_47577156-S	ILMN_288914	OLR339	NM_001000954.1	NM_001000954.1		405303	47577156	NM_001000954.1	Olr339	NP_001000954.1	ILMN_1360211	0000460066	S	253	GCACTCCAGTCAGGGAACAAGGTCATCTCCTATAATGGGTGTGCAGCTCA	1	+	215966832-215966881	1q43	Rattus norvegicus olfactory receptor 339 (Olr339), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr339	Olr339
Rattus norvegicus	RefSeq	GI_62642485-S	ILMN_66674	SMNDC1_PREDICTED	XM_213506.3	XM_213506.3		287768	62642485	XM_213506.3	Smndc1_predicted	XP_213506.3	ILMN_1367677	0006520064	S	1853	GCCAGCATTTGTTGGCATAAGTGAAGCACCACAGCTATCCCAAGTTGAGT				1q55	PREDICTED: Rattus norvegicus survival motor neuron domain containing 1 (predicted) (Smndc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575944-S	ILMN_277212	OLR1491_PREDICTED	XM_001080405.1	XM_001080405.1		404969	109491257	XM_001080405.1	Olr1491_predicted	XP_001080405.1	ILMN_1359277	0001410619	S	391	CACCAAGCTCTGTGTGTATGTGGTGGTACTGTTCTGGGCACTTACTGTGT				10q24	PREDICTED: Rattus norvegicus olfactory receptor 1491 (predicted) (Olr1491_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654275-S	ILMN_273900	RGD1310036	NM_001024788.1	NM_001024788.1		316000	67078445	NM_001024788.1	RGD1310036	NP_001019959.1	ILMN_1355021	0003520528	S	3379	CCCCGAGGCTCTCTTTCAACCCAATCTGCTAGGTCTCAACCAGCTAGGCC	8	+	113201269-113201318	8q32	Rattus norvegicus similar to RIKEN cDNA 4921517D21 (RGD1310036), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_67078445	ILMN_273900	RGD1310036	NM_001024788.1	NM_001024788.1		316000	67078445	NM_001024788.1	RGD1310036	NP_001019959.1	ILMN_1530487	0005700121	S	920	AACCAATTGTCTGCTCTCTCAGATTCTTCCAAAAAGGACAAACTGTATTT	8	+	113198810-113198859	8q32	Rattus norvegicus similar to RIKEN cDNA 4921517D21 (RGD1310036), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645454	ILMN_59792	RGD1309969	XM_342471.3	XM_342471.3		362171	109468495	XM_342471.3	RGD1309969	XP_342472.2	ILMN_1651021	0002850427	S	2238	CTTGGCTTCTAGGGAAGGCTGTGCTGGGGTCAGGAAACTGCCTCTTCAGC	3	-	86867903-86867952	3q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2600010E01 (RGD1309969), mRNA.					
Rattus norvegicus	RefSeq	GI_62652923-S	ILMN_48114	LOC362985	XM_347091.2	XM_347091.2		362985	62652923	XM_347091.2	LOC362985	XP_347092.2	ILMN_1372853	0000130358	S	430	GGTCAGCCTGGACTCTGTTGAGGAAGGAGCGAGAACCATCTCTTTGGGGG					PREDICTED: Rattus norvegicus similar to mKIAA3020 protein (LOC362985), mRNA.					
Rattus norvegicus	Unigene	Rn.33629	ILMN_160554	RN.33629	Rn.33629		Rn.33629		51545570	CV078539			ILMN_1530355	0004850300	S	290	TACATAGCGATAACAAGCCAACCTAAGATAATTGAGACCCTAGTTTTTAA					AGENCOURT_31479256 NIH_MGC_251 Rattus norvegicus cDNA clone IMAGE:7385343 5', mRNA					
Rattus norvegicus	RefSeq	GI_62662268-S	ILMN_59229	RGR_PREDICTED	XM_224673.3	XM_224673.3		306307	109503099	XM_224673.3	Rgr_predicted	XP_224673.1	ILMN_1351888	0006180129	S	1309	GCAAGCACATCAAACACTCACTGAAACAGATGCCGATATGAGCCTTGGCC	16	-	13242684-13242733	16p14	PREDICTED: Rattus norvegicus retinal G protein coupled receptor (predicted) (Rgr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34882968-S	ILMN_53834	LOC367631	XM_346233.1	XM_346233.1		367631	34882968	XM_346233.1	LOC367631	XP_346234.1	ILMN_1371324	0000060450	S	2	GGTCCTCATTCAGGTGCAGAGTGAAGACAGTGTACTTCTGTTTGTCATTG					PREDICTED: Rattus norvegicus similar to protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b (LOC367631), mRNA.					
Rattus norvegicus	RefSeq	GI_27714504-S	ILMN_283277	RGD1310395_PREDICTED	XM_001055709.1	XM_001055709.1		313225	109476481	XM_001055709.1	RGD1310395_predicted	XP_001055709.1	ILMN_1365186	0004810164	S	916	GAGCCTTAGAAAACCGAAGGACCCCAAGGCGGAAGGCCAGGAGGTAGACA				5q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310039E09 (predicted) (RGD1310395_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650841-S	ILMN_276350	SGPP1	XM_001080791.1	XM_001080791.1		81536	109479536	XM_001080791.1	Sgpp1	XP_001080791.1	ILMN_1367537	0005700600	S	2982	GAAGAGAATTGATTTCCATGTGAATGGCCGTCAGGGGTGGAGGTAGCGAC				6q24	PREDICTED: Rattus norvegicus sphingosine-1-phosphate phosphatase 1 (Sgpp1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence ISS]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IEA]; The chemical reactions and pathways involving sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol [goid 6668] [evidence ISS]; The chemical reactions and pathways involving sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol [goid 6668] [evidence IEA]; The chemical reactions and pathways involving sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues [goid 6670] [evidence ISS]; The chemical reactions and pathways involving sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues [goid 6670] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: sphingosine 1-phosphate + H2O = sphingosine + phosphate [goid 42392] [evidence ISS]; Catalysis of the reaction: sphingosine 1-phosphate + H2O = sphingosine + phosphate [goid 42392] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641756-S	ILMN_278255	RGD1565025_PREDICTED	XR_008731.1	XR_008731.1		499303	109463389	XR_008731.1	RGD1565025_predicted		ILMN_1360611	0000770731	S	725	TTTGCTTCGGCTCACTCAGCACTATCGGCCTAGGAGACTTGCTGCCTGCC					PREDICTED: Rattus norvegicus similar to two pore domain K+ channel subunit (predicted) (RGD1565025_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659584-S	ILMN_293398	CENPL	NM_001033061.1	NM_001033061.1		289150	74271904	NM_001033061.1	Cenpl	NP_001028233.1	ILMN_1357608	0003440195	S	1626	TCTCAGGATGCCTTCGGAGTTGCCCAGGTGGATCTGGAACCCAGTAGTGG	13	+	76644251-76644300	13q22	Rattus norvegicus centromere protein L (Cenpl), mRNA.	The region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome [goid 775] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]			MGC125045	MGC125045
Rattus norvegicus	RefSeq	GI_62649780-S	ILMN_69862	RGD1304793_PREDICTED	XM_232731.4	XM_232731.4		313021	109475581	XM_232731.4	RGD1304793_predicted	XP_232731.3	ILMN_1370100	0003940711	S	1207	CAAGGGCTGAATGGCACTTACGCCGAGTGGGTCCCCCGTAAACCTGGTAA	5	+	151859727-151859776	5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp564D0478 (predicted) (RGD1304793_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718064-S	ILMN_63538	LOC501284	XM_576699.1	XM_576699.1		501284	62718064	XM_576699.1	LOC501284	XP_576699.1	ILMN_1371731	0002340121	S	1601	CCCTCCACTTGACTGGCTGGTTGGACCCTTTACCTTGATGCCTTGTGGCC					PREDICTED: Rattus norvegicus similar to mKIAA1881 protein (LOC501284), mRNA.					
Rattus norvegicus	RefSeq	GI_62667515-S	ILMN_66739	GPR50	XM_346374.3	XM_346374.3		117097	109511370	XM_346374.3	Gpr50	XP_346375.1	ILMN_1351212	0000670035	S	1604	TACCAGCCACCGTGCGACCACCACTGTTGACTATCTCGAACCTGCCACCA	X	+	157105804-157105853	Xq37	PREDICTED: Rattus norvegicus G protein-coupled receptor 50 (Gpr50), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melatonin, N-acetyl-5-methoxytryptamine, to initiate a change in cell activity. Melatonin is a neuroendocrine substance that stimulates the aggregation of melanosomes in melanophores, thus lightening the skin [goid 8502] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647458-S	ILMN_67748	SMYD1_PREDICTED	XM_216172.3	XM_216172.3		297333	62647458	XM_216172.3	Smyd1_predicted	XP_216172.3	ILMN_1364737	0001850138	S	2759	TGGGGTGGCTCTGGTTCCACTAATCAGACATAGTTGTTCCCTGGTGACTC				4q32-q33	PREDICTED: Rattus norvegicus SET and MYND domain containing 1 (predicted) (Smyd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644446-S	ILMN_276475	LOC499715	XM_001078087.1	XM_001078087.1		499715	109467695	XM_001078087.1	LOC499715	XP_001078087.1	ILMN_1372131	0005670164	S	892	ACTCAGTCTCCAAGGCGAAGTGACTCAGGGCCACATGCAGAAAGCCAGGG				2q44	PREDICTED: Rattus norvegicus LRRGT00095 (LOC499715), mRNA.					
Rattus norvegicus	RefSeq	GI_62656314-S	ILMN_263341	MPDU1	XM_001078776.1	XM_001078776.1		303244	109491069	XM_001078776.1	Mpdu1	XP_001078776.1	ILMN_1359217	0002570050	S	1194	CGGAAGGGTGTGTGGAGAAGGCGGCACTGGTTGCCACTGTAGGAAGAGAA				10q24	PREDICTED: Rattus norvegicus mannose-P-dolichol utilization defect 1 (Mpdu1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9312] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646469-S	ILMN_286642	NPEPL1_PREDICTED	XM_001055241.1	XM_001055241.1		311671	109471448	XM_001055241.1	Npepl1_predicted	XP_001055241.1	ILMN_1373909	0003120070	S	2111	GCCAGGGTACGTGTGGTGACTGGCTGTTAGGGACCCATTCTGTGAAGCAG				3q42	PREDICTED: Rattus norvegicus aminopeptidase-like 1 (predicted) (Npepl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665196-S	ILMN_59573	SLC7A6_PREDICTED	XM_226422.3	XM_226422.3		307811	109508071	XM_226422.3	Slc7a6_predicted	XP_226422.1	ILMN_1367513	0002320707	S	3625	GCCGTCTCCTAGTACCAAACTGGCCGTAGATGCACAGGAGTAACCTTGGA	19	+	36049295-36049344	19q12	PREDICTED: Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 (predicted) (Slc7a6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667499-S	ILMN_65809	RGD1561702_PREDICTED	XM_577050.2	XM_577050.2		501655	109511326	XM_577050.2	RGD1561702_predicted	XP_577050.1	ILMN_1364656	0006100025	S	503	ACTTCCTAGACCACCTTTCACTTGTGATGAGGACCATCCCACGCCCAGTG	X	+	150891467-150891516	Xq37	PREDICTED: Rattus norvegicus similar to ESO3 protein (predicted) (RGD1561702_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799399-S	ILMN_69047	KCNJ5	NM_017297.2	NM_017297.2		29713	56799399	NM_017297.2	Kcnj5	NP_058993.1	ILMN_1359385	0000070300	S	3051	GGAACAGCATCCTAACCTCAGGCCTTGTTCCCCTTAGACAGGGTGCCCAG				8q21	Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 5 (Kcnj5), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA];  [goid 15467] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	MGC93525	MGC93525
Rattus norvegicus	RefSeq	GI_6981705-S	ILMN_292610	VLDLR	NM_013155.1	NM_013155.1		25696	6981705	NM_013155.1	Vldlr	NP_037287.1	ILMN_1355151	0002030079	S	2830	GAGGTCTACACCCATAACACCCTACTCCGGAATGGTAACAGAGCCAGCAG	1	+	230697629-230697678	1q51	Rattus norvegicus very low density lipoprotein receptor (Vldlr), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with apolipoprotein E to initiate a change in cell activity [goid 30227] [evidence TAS]; Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein [goid 30296] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62646593-S	ILMN_269844	LOC690989	XM_001076415.1	XM_001076415.1		690989	109469400	XM_001076415.1	LOC690989	XP_001076415.1	ILMN_1359070	0002630066	S	49	GAGGCCATCTACCAGAAGGTCCACTCTGCTGCCTTGGCCATAGCTGAGCA	3|NW_047678.1	+	13061-13110		PREDICTED: Rattus norvegicus similar to Docking protein 5 (Downstream of tyrosine kinase 5) (Protein dok-5) (LOC690989), mRNA.			Interacting selectively with the insulin receptor [goid 5158] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47777681-S	ILMN_272972	OLR956	NM_001001381.1	NM_001001381.1		302041	47777681	NM_001001381.1	Olr956	NP_001001381.1	ILMN_1356193	0005080707	S	336	ATTGGCAGCCATGTCCTATGACAGATATGTGGCAATCTGCAAGCTCCTGC	7	+	4982045-4982094	7q11	Rattus norvegicus olfactory receptor 956 (Olr956), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr956	Olr956
Rattus norvegicus	RefSeq	GI_8393772-S	ILMN_270836	MEOX2	NM_017149.1	NM_017149.1		29279	8393772	NM_017149.1	Meox2	NP_058845.1	ILMN_1370777	0000540397	S	1957	CATAGGCAAGTAGTTACCTTGCCAAATGAGTCTTGTGTGGCAGATGTCTG	6	+	55956774-55956823	6q21	Rattus norvegicus mesenchyme homeobox 2 (Meox2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process by which individual somites establish identity during embryogenesis [goid 1757] [evidence ISS]; The process by which individual somites establish identity during embryogenesis [goid 1757] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 60173] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655899-S	ILMN_60817	SOLH_PREDICTED	XM_239171.4	XM_239171.4		303000	109487932	XM_239171.4	Solh_predicted	XP_239171.4	ILMN_1366188	0000780528	S	3565	AATGCTGGCTTCTCTATCACCCATCGCCTGGCACATCGCAAGGCAGCCCA	10	-	15219822-15219871	10q12	PREDICTED: Rattus norvegicus small optic lobes homolog (Drosophila) (predicted) (Solh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648331-A	ILMN_290206	TM7SF3	NM_001011970.1	NM_001011970.1		297725	58865515	NM_001011970.1	Tm7sf3	NP_001011970.1	ILMN_1376531	0003850167	S	1882	CAGGTGACCCCTTGTTGGCATACAGCAGTGGTAAGGTGAGAAAAGTCACC	4	-	184180328-184180377	4q44	Rattus norvegicus transmembrane 7 superfamily member 3 (Tm7sf3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC109599	MGC109599
Rattus norvegicus	RefSeq	GI_62657505-S	ILMN_68828	RGD1304570_PREDICTED	XM_221214.4	XM_221214.4		303755	109489520	XM_221214.4	RGD1304570_predicted	XP_221214.4	ILMN_1361637	0001500288	S	1377	CAAAGCTGGATGAGGCAACCCAGTAGGAGGAAACGGGTCACACAGTAGAC	10	+	110655199-110655248	10q32.3	PREDICTED: Rattus norvegicus similar to Hypothetical protein 9030012M21 (predicted) (RGD1304570_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648550-S	ILMN_286817	RGD1561849_PREDICTED	XM_001066686.1	XM_001066686.1		500393	109476053	XM_001066686.1	RGD1561849_predicted	XP_001066686.1	ILMN_1371895	0006770280	S	1519	CGTCGCTCTGCTTAGCTAACCGTGGGCACGACTGCATGAGCTCTCTTCTT				5q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110035E14 (predicted) (RGD1561849_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665838-S	ILMN_68409	MCM3AP_PREDICTED	XM_215376.4	XM_215376.4		294339	109509329	XM_215376.4	Mcm3ap_predicted	XP_215376.4	ILMN_1363761	0006420609	S	6140	CCACAAGTCCTCAGAATGCAGGGACAGGAGACCACGTGCGGTTCTCAGAG	20	-	12543696-12543732:12546679-12546691	20p12	PREDICTED: Rattus norvegicus minichromosome maintenance deficient 3 (S. cerevisiae) associated protein (predicted) (Mcm3ap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666376-S	ILMN_48828	LOC365608	XM_345126.2	XM_345126.2		365608	62666376	XM_345126.2	LOC365608	XP_345127.2	ILMN_1374810	0006450452	S	370	CTTCTGGTCGTAGCAAGCTCTTTCGTCAGGGCCTCTCAGATACTCAGCTG					PREDICTED: Rattus norvegicus similar to BTB (POZ) domain containing 9 (LOC365608), mRNA.					
Rattus norvegicus	RefSeq	GI_62660705-S	ILMN_50641	ZFP278	XM_223592.3	XM_223592.3		305471	109499929	XM_223592.3	Zfp278	XP_223592.3	ILMN_1373992	0007100451	S	3626	GATCAGGAAGAGGGTTCAGTGCGTTGGGAGCCAGGAAGGTGGAAGAGCCT	14	+	83924094-83924143	14q21	PREDICTED: Rattus norvegicus zinc finger protein 278 (Zfp278), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663933-S	ILMN_61825	LOC498799	XM_574084.1	XM_574084.1		498799	62663933	XM_574084.1	LOC498799	XP_574084.1	ILMN_1365707	0000520594	S	1260	TCTGGACTGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCCCAGG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498799), mRNA.					
Rattus norvegicus	RefSeq	GI_62658715-S	ILMN_266971	LOC498171	XM_001070562.1	XM_001070562.1		498171	109497080	XM_001070562.1	LOC498171	XP_001070562.1	ILMN_1363333	0003120014	S	1165	GGCCTTCAGTAAGGGCAGGAGAGAAGGTCCAGGAAAACCGAGTGTCCCAG				12q12	PREDICTED: Rattus norvegicus similar to PRKR interacting protein 1 (IL11 inducible) (LOC498171), mRNA.					
Rattus norvegicus	RefSeq	GI_62647316-S	ILMN_61248	GARS	XM_216152.4	XM_216152.4		297113	109472086	XM_216152.4	Gars	XP_216152.4	ILMN_1349342	0002480162	S	2191	CCCCACACTGCAACTCTGAGGGACCGAGACTCCATGAGACAGATAAGGGC	4	-	83720145-83720194	4q24	PREDICTED: Rattus norvegicus glycyl-tRNA synthetase (Gars), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]	The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6426] [evidence IEA]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence IEA]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence ISS]; The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA [goid 6426] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly) [goid 4820] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly) [goid 4820] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663679-S	ILMN_62523	LOC498767	XM_574053.1	XM_574053.1		498767	62663679	XM_574053.1	LOC498767	XP_574053.1	ILMN_1349241	0003170619	S	914	TGGCCCCCCGGGAAGGACATGGGCATGAAGGCCGAGGACATAGTTTTCAT				17q12.1	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 26 (LOC498767), mRNA.					
Rattus norvegicus	RefSeq	GI_62655948-S	ILMN_283749	CCDC99	NM_001034138.1	NM_001034138.1		303037	77627736	NM_001034138.1	Ccdc99	NP_001029310.1	ILMN_1356336	0003610609	S	1687	CTGGATACACAGCCGAAGAAGGAGAAGTGTGTGACGCTTGTGGCTAGTCC	10	-	19687837-19687886	10q12	Rattus norvegicus coiled-coil domain containing 99 (Ccdc99), mRNA.				MGC124977	MGC124977
Rattus norvegicus	RefSeq	GI_62641672-S	ILMN_52179	PPFIA1_PREDICTED	XM_238162.3	XM_238162.3		293645	62641672	XM_238162.3	Ppfia1_predicted	XP_238162.3	ILMN_1354434	0005080575	S	4028	GAGCCTCCTGCTGTTTACCCACACTACTTCTACAGATGACGCACGCCACT				1q42	PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1 (predicted) (Ppfia1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651734-S	ILMN_56950	REXO1	XM_576183.2	XM_576183.2		314630	109480186	XM_576183.2	Rexo1	XP_576183.1	ILMN_1365554	0003130068	S	4060	CCACCGCTCCCGACAGTGGGTTATGCCTTCCGCTCCTTTGTATATAACGC	7	+	10683448-10683497	7q11	PREDICTED: Rattus norvegicus REX1, RNA exonuclease 1 homolog (S. cerevisiae) (Rexo1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31795569-S	ILMN_264889	GPR151	NM_181633.2	NM_181633.2		307475	31795569	NM_181633.2	Gpr151	NP_853664.1	ILMN_1369361	0001570064	S	1261	CCCTATACCCTGGGAACATGAAGGCCAAGAGACAAAGGGCTGCAATTAGC	18	-	35780562-35780563:35780564-35780611	18p11	Rattus norvegicus G protein-coupled receptor 151 (Gpr151), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	nGPCR-2037	nGPCR-2037
Rattus norvegicus	RefSeq	GI_11559950-S	ILMN_295147	NRBF2	NM_022186.1	NM_022186.1		58839	11559950	NM_022186.1	Nrbf2	NP_071522.1	ILMN_1356300	0006420706	S	1442	AGATACACGCTTCCAGACGGAACTGTACGTGCCACAGTTTGCACTACTCG	20	+	22146189-22146238	20p11	Rattus norvegicus nuclear receptor binding factor 2 (Nrbf2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62645291-S	ILMN_263288	DUOX1	XM_001081004.1	XM_001081004.1		266807	109470735	XM_001081004.1	Duox1	XP_001081004.1	ILMN_1367874	0003780315	S	5017	GCCAGGGGCCACTTACAGAAAGACCAGCCTAACCGCACAACTGATCTCTC				3q35	PREDICTED: Rattus norvegicus dual oxidase 1 (Duox1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss [goid 42335] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2) [goid 42744] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61097927-S	ILMN_275250	SNAI1	NM_053805.1	NM_053805.1		116490	61097927	NM_053805.1	Snai1	NP_446257.1	ILMN_1374499	0000730358	S	1393	GAATAATGGCCGTCACTTGTTAGGGGCCAAGTGGGGTGCTTCAGCCTGGC	3	+	158681265-158681314	3q42	Rattus norvegicus snail homolog 1 (Drosophila) (Snai1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence TAS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence TAS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Sna	Sna
Rattus norvegicus	RefSeq	GI_62642500-S	ILMN_289853	LOC679869	XM_001054844.1	XM_001054844.1		679869	109460265	XM_001054844.1	LOC679869	XP_001054844.1	ILMN_1348896	0002850520	S	2235	CAACTTCTTCCTTACATTCCCACAACTCGCTGGCTGGGACGCAACCCCAG	1	+	262224880-262224929	1q55	PREDICTED: Rattus norvegicus similar to transcription factor 7-like 2, T-cell specific, HMG-box, transcript variant 2 (LOC679869), mRNA.					
Rattus norvegicus	RefSeq	GI_62659232-S	ILMN_55119	LOC498220	XM_573440.1	XM_573440.1		498220	62659232	XM_573440.1	LOC498220	XP_573440.1	ILMN_1351661	0003440114	S	846	CACGATCTCTGGGAATCTCACGGTAGACAGCTGTGATAAACTGGAAAAGG					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC498220), mRNA.					
Rattus norvegicus	RefSeq	GI_56605719-S	ILMN_272482	GADD45B	NM_001008321.1	NM_001008321.1		299626	56605719	NM_001008321.1	Gadd45b	NP_001008322.1	ILMN_1353590	0002640215	S	950	AAGACAGGAAGGAGGGGACCTCAGGCTGGAGGAGACAGAGACTTTAGAGC	7	-	10289349-10289398	7q11	Rattus norvegicus growth arrest and DNA-damage-inducible 45 beta (Gadd45b), mRNA.		The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105966	MGC105966
Rattus norvegicus	RefSeq	GI_62642992-S	ILMN_49022	RGD1561520_PREDICTED	XM_345159.3	XM_345159.3		365682	109464416	XM_345159.3	RGD1561520_predicted	XP_345160.3	ILMN_1358932	0003840458	S	214	GGACCAGCCAGTACCATCTCACCATCTTCGAGGTTAGGCTCATACCTGGG	2	-	51477690-51477739	2q16	PREDICTED: Rattus norvegicus similar to Ab2-162 (predicted) (RGD1561520_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647939-S	ILMN_67669	LOC497794	XM_579477.1	XM_579477.1		497794	62647939	XM_579477.1	LOC497794	XP_579477.1	ILMN_1367561	0006420722	S	2750	GGCCACAGTGCCTGAAACCGGGAGAAAGGACACAGTAGTCAAAGTCTTGA				4q42	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_023103 (LOC497794), mRNA.					
Rattus norvegicus	RefSeq	GI_19705526-S	ILMN_277795	BZW2	NM_134402.1	NM_134402.1		171439	19705526	NM_134402.1	Bzw2	NP_599229.1	ILMN_1356421	0005270070	S	1475	CGGTTGGGAATGCTGAAGTGTTTGGGGAGGGAAACTTGGCTTCTGTTTGC	6	-	54817590-54817639	6q16	Rattus norvegicus basic leucine zipper and W2 domains 2 (Bzw2), mRNA.		The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Hfb2	Hfb2
Rattus norvegicus	RefSeq	GI_62643577-S	ILMN_54344	LOC361964	XM_342262.2	XM_342262.2		361964	62643577	XM_342262.2	LOC361964	XP_342263.2	ILMN_1364582	0004760338	S	1949	AGTCGGATGTCCAAAGACCTCCTTGAGATGCCATGTGAGAGTGAGCCCTC				2q32	PREDICTED: Rattus norvegicus similar to hypothetical protein 4931432L23 (predicted) (LOC361964), mRNA.					
Rattus norvegicus	RefSeq	GI_9507040-S	ILMN_277799	RESP18	NM_019278.1	NM_019278.1		50561	9507040	NM_019278.1	Resp18	NP_062151.1	ILMN_1359752	0006980519	S	464	CGCCCCAAAAGAGTCCAGCAGTCAAGGTGAATAGGGACCGATGCTTTACC	9	-	74553658-74553697:74553820-74553829	9q33	Rattus norvegicus regulated endocrine-specific protein 18 (Resp18), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The volume enclosed by the membranes of the rough endoplasmic reticulum [goid 48237] [evidence IDA]				
Rattus norvegicus	RefSeq	GI_62543536-S	ILMN_296220	TBC1D10A	NM_001015022.2	NM_001015022.2		360968	62899059	NM_001015022.2	Tbc1d10a	NP_001015022.1	ILMN_1349786	0001230148	S	1315	CTCCCCAGCTCCAAGACTAAGCCACACAAGCAGGCCCAGAAGGAGCAGAA	14	+	84837662-84837711	14q21	Rattus norvegicus TBC1 domain family, member 10a (Tbc1d10a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]	MGC105611; Tbc1d10	MGC105611; Tbc1d10
Rattus norvegicus	RefSeq	GI_62643932-A	ILMN_298097	POLR3C	NM_001012081.1	NM_001012081.1		310685	58865731	NM_001012081.1	Polr3c	NP_001012081.1	ILMN_1376696	0007040446	S	2225	GAAGGCGTCCACCCCATGCCCAGCTACCTTGAAGACTCTCATACTGACCC	2	-	191512063-191512112	2q34	Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide C (62kD) (Polr3c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655382-S	ILMN_264143	GBX2	XM_001066354.1	XM_001066354.1		114500	109487494	XM_001066354.1	Gbx2	XP_001066354.1	ILMN_1350273	0002690594	S	1070	ACCGTGGAGAGGCCCTAACACTTGAGGGAACCCGTGTCAGACTCCACTCT				9q35	PREDICTED: Rattus norvegicus gastrulation brain homeobox 2 (Gbx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEA]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence ISS]; The process by which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. Morphogenesis pertains to the creation of form. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 21555] [evidence IEA]; The process by which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. Morphogenesis pertains to the creation of form. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 21555] [evidence ISS]; The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21568] [evidence IEA]; The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21568] [evidence ISS]; The multiplication or reproduction of neuroblasts that will give rise to granule cells. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21930] [evidence IEA]; The multiplication or reproduction of neuroblasts that will give rise to granule cells. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21930] [evidence ISS]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence IEA]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence ISS]; The process whose specific outcome is the progression of the midbrain-hindbrain boundary over time, from its formation to the mature structure. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages [goid 30917] [evidence ISS]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence IEA]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands [goid 48483] [evidence IEA]; The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands [goid 48483] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21549] [evidence IEA]; The process by which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. Morphogenesis pertains to the creation of form. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 21555] [evidence IEA]; The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order [goid 21568] [evidence IEA]; The multiplication or reproduction of neuroblasts that will give rise to granule cells. A granule cell is a glutamatergic interneuron found in the cerebellar cortex [goid 21930] [evidence IEA]; The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium) [goid 30902] [evidence IEA]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence IEA]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence IEA]; The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands [goid 48483] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647832-S	ILMN_274575	FBLN2	XM_001073317.1	XM_001073317.1		282583	109473869	XM_001073317.1	Fbln2	XP_001073317.1	ILMN_1350146	0000870463	S	3587	TGCTCCCGCCTTTGCTGGGGACACCATCTCACTGACCATCACCAAGGGTA				4q34	PREDICTED: Rattus norvegicus fibulin 2, transcript variant 2 (Fbln2), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653690-S	ILMN_286937	DNAJA4	NM_001025411.1	NM_001025411.1		300721	70794763	NM_001025411.1	Dnaja4	NP_001020582.1	ILMN_1372010	0004920072	S	1745	TGGTGCGGTGTGGCATGGCCTGGTTGGACTAGCACATGATGAATGTAAAC	8	+	58266452-58266501	8q24	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily A, member 4 (Dnaja4), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661266-S	ILMN_48571	RGD1311455_PREDICTED	XM_341304.3	XM_341304.3		361028	109501532	XM_341304.3	RGD1311455_predicted	XP_341305.3	ILMN_1368573	0000580292	S	726	CCCCGCAGGATCATACCCCACGCCAGGACCCCACCCTACTCTGAATAATC	15	+	23264309-23264358	15p14	PREDICTED: Rattus norvegicus similar to MAPK-interacting and spindle-stabilizing protein (predicted) (RGD1311455_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647420-S	ILMN_66028	LOC500178	XM_575530.1	XM_575530.1		500178	62647420	XM_575530.1	LOC500178	XP_575530.1	ILMN_1360616	0002450110	S	359	GCAGGGGAGTAGTAGCCCACCACACAGTACCACAGACTGGGACAAAATGC					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain variable region (LOC500178), mRNA.					
Rattus norvegicus	RefSeq	GI_8392841-S	ILMN_294014	ACP2	NM_016988.1	NM_016988.1		24162	8392841	NM_016988.1	Acp2	NP_058684.1	ILMN_1374963	0002340546	S	1949	CCTTGACTGTGGCCCGAAACAGAGCTGAAGTAACTCCGAGGAAATGAAGG	3	+	75568354-75568403	3q24	Rattus norvegicus acid phosphatase 2, lysosomal (Acp2), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]	Interacting selectively with a phosphorylated tyrosine residue within a protein [goid 1784] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence ISS]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence ISS]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IDA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62663034-S	ILMN_68072	LOC498672	XM_573955.2	XM_573955.2		498672	109503637	XM_573955.2	LOC498672	XP_573955.2	ILMN_1360088	0006860403	S	2147	CTGCTCTTGAACCTCGGCTGTCTGTTACATTTAGCATAGCCTTTGACCGC	16|NW_047479.1	-	193423-193443:193942-193970		PREDICTED: Rattus norvegicus similar to F40G12.3 (LOC498672), mRNA.					
Rattus norvegicus	RefSeq	GI_62641795-S	ILMN_58912	PYGM	XM_342002.3	XM_342002.3		24701	109459778	XM_342002.3	Pygm	XP_342003.1	ILMN_1370766	0000380750	S	2799	GGGGTCTAACCAAGTGCACCCACTCCCCAATAAATCGACTCTCCATGACC	1	+	209181532-209181581	1q43	PREDICTED: Rattus norvegicus muscle glycogen phosphorylase (Pygm), mRNA.	A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5980] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IEA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence TAS]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IDA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence ISS]; Interacting selectively with AMP, adenosine monophosphate [goid 16208] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate [goid 8184] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663390-S	ILMN_51854	RGD1560399_PREDICTED	XM_573998.2	XM_573998.2		498726	109504802	XM_573998.2	RGD1560399_predicted	XP_573998.1	ILMN_1372309	0005130504	S	844	GTGGCTACGTTCAACCGACGTTCGTGTGACCTGCTTTCCTTTGTATTCCC	17	-	26854479-26854528	17p12	PREDICTED: Rattus norvegicus similar to hypothetical protein C630023L15 (predicted) (RGD1560399_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51854250-S	ILMN_285271	REG4	NM_001004096.1	NM_001004096.1		445583	51854250	NM_001004096.1	Reg4	NP_001004096.1	ILMN_1366933	0005700324	S	248	CTGGCTATCAGAGAAGCCTGCCTGTGTGGATTGGCCTGCATGACCCACAG	2	+	193072773-193072822	2q34	Rattus norvegicus regenerating islet-derived family, member 4 (Reg4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19173781-S	ILMN_270385	NECAB2	NM_133415.1	NM_133415.1		170928	19173781	NM_133415.1	Necab2	NP_596906.1	ILMN_1364683	0007000577	S	1502	CAATCTAGGCTTGGGTAGAGCCCAGGGTCCCCAGCACCCACACTAGGGCC				19q12	Rattus norvegicus N-terminal EF-hand calcium binding protein 2 (Necab2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms [goid 17000] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence NAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Necab2	Necab2
Rattus norvegicus	RefSeq	GI_62646226	ILMN_51433	RGD1560115_PREDICTED	XM_575275.2	XM_575275.2		499930	109469117	XM_575275.2	RGD1560115_predicted	XP_575275.2	ILMN_1650739	0005340593	S	1	ATGTCGAACAGCGATCTAGGCGAGGATGAAGGTCTTCTGTCACTGACTGG	3	+	147254728-147254777	3q42	PREDICTED: Rattus norvegicus similar to TGFB-induced factor 2 (predicted) (RGD1560115_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980959-S	ILMN_273413	GLYCAM1	NM_012794.1	NM_012794.1		25258	6980959	NM_012794.1	Glycam1	NP_036926.1	ILMN_1350230	0004780575	S	243	TGTGGGGACAGAATCTACCAAACCACAGAGTCAAGAGGCCCAGGACGGGC	7	-	142456171-142456220	7q36	Rattus norvegicus glycosylation dependent cell adhesion molecule 1 (Glycam1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656577-S	ILMN_56961	FOXN1_MAPPED	XM_220632.4	XM_220632.4		287469	109488574	XM_220632.4	Foxn1_mapped	XP_220632.4	ILMN_1350206	0001050204	S	2219	TGGCAGAAACAGGCAATGAGGCAGGTGAACTGGCACCTCCAGGCAGCGGT	10	+	64256270-64256319	10q25	PREDICTED: Rattus norvegicus forkhead box N1 (mapped) (Foxn1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_9910511-S	ILMN_298408	PRL8A3	NM_020079.1	NM_020079.1		24658	9910511	NM_020079.1	Prl8a3	NP_064464.1	ILMN_1370421	0006200072	S	307	GAGGTGGGATGAGACTGTTGTCAAAACTGGAACTTACTGCCATTCAACTC	17	+	44102297-44102346	17p11	Rattus norvegicus prolactin family 8, subfamily a, member 3 (Prl8a3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Prlpc; Prlpc1; Plpcv; Plpc	Prlpc; Prlpc1; Plpcv; Plpc
Rattus norvegicus	RefSeq	GI_34858204-S	ILMN_53461	LOC295254	XM_227424.2	XM_227424.2		295254	34858204	XM_227424.2	LOC295254	XP_227424.2	ILMN_1362219	0007100014	S	754	CACACCTCCACAGCCACTCAATGGCCACTGGTTTCTTGGCAACTGCTGAT				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ3 (LOC295254), mRNA.					
Rattus norvegicus	RefSeq	GI_47577488	ILMN_289408	OLR482	NM_001000561.1	NM_001000561.1		366099	47577488	NM_001000561.1	Olr482	NP_001000561.1	ILMN_1650617	0004010594	S	440	CCCCCTATCTCTACAGCTTCTTGGTAGCACTGTTTCACGCCACCCTCACC	3	-	69347487-69347536	3q24	Rattus norvegicus olfactory receptor 482 (Olr482), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr482	Olr482
Rattus norvegicus	RefSeq	GI_62079216-S	ILMN_273271	RGD1309888	NM_001014243.1	NM_001014243.1		365215	62079216	NM_001014243.1	RGD1309888	NP_001014265.1	ILMN_1361479	0002340670	S	1880	TCCATAGAGACCAGCAGGAGGAAGAGTCAGCATGTCCCCAGGAAGCCTGA	1	+	79665799-79665848	1q21	Rattus norvegicus similar to RIKEN cDNA 1500002O20 (RGD1309888), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62644817-S	ILMN_50261	RGD1306233_PREDICTED	XM_216027.4	XM_216027.4		296608	109467957	XM_216027.4	RGD1306233_predicted	XP_216027.1	ILMN_1360351	0002970685	S	369	CTGGGCCGGACAATCACGTCACCCACTACGACCCCTTAAACTTTCACCCC	3	-	7452416-7452465	3p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC29761 (predicted) (RGD1306233_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652669-S	ILMN_264050	MFSD3	NM_001024908.1	NM_001024908.1		500899	67846095	NM_001024908.1	Mfsd3	NP_001020079.1	ILMN_1359253	0002760270	S	1373	GCTGGACCTCAGGGTTGTGTGTAAAGCCAGTGAAGCTCTGGATGGCCTGG	7	+	114752745-114752794	7q34	Rattus norvegicus major facilitator superfamily domain containing 3 (Mfsd3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62656903-S	ILMN_54114	NFE2L1_PREDICTED	XM_340886.3	XM_340886.3		360610	109488856	XM_340886.3	Nfe2l1_predicted	XP_340887.2	ILMN_1364248	0001050397	S	4017	TTCAGCTTCAGGCAGCTTCTTCACAGCCCGTTTAGCCTGGGGTCCTGGAG	10	-	85574919-85574968	10q31	PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2,-like 1 (predicted) (Nfe2l1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641169-S	ILMN_264396	CYP2R1_PREDICTED	XM_001078357.1	XM_001078357.1		361631	109462722	XM_001078357.1	Cyp2r1_predicted	XP_001078357.1	ILMN_1354296	0002360450	S	1529	TGGGCATGACATTACAACCCCAGGCCTACCTCATCTGTGCAGAAAGACGC				1q34	PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily r, polypeptide 1 (predicted) (Cyp2r1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27683950-S	ILMN_265239	LOC301444	XM_237195.1	XM_237195.1		301444	27683950	XM_237195.1	LOC301444	XP_237195.1	ILMN_1354116	0000070037	S	107	CTGTGGGTGACATAAATACAGATAGGCCTGGGCTGTTGGACCTCAAGGGC	9	-	58472152-58472201	9q31	PREDICTED: Rattus norvegicus pseudogene for diazepam binding inhibitor 1 (LOC301444), mRNA.			Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649578-S	ILMN_302082	ZMPSTE24_PREDICTED	XM_001053840.1	XM_001053840.1		313564	109477155	XM_001053840.1	Zmpste24_predicted	XP_001053840.1	ILMN_1358859	0002850603	S	2018	CCCAGATCACTGTGCTTGTGCCTACACAGGCTTCGCTTTTACCGTCACGC				5q36	PREDICTED: Rattus norvegicus zinc metallopeptidase, STE24 homolog (S. cerevisiae) (predicted) (Zmpste24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664098-S	ILMN_60472	LOC498826	XM_574107.1	XM_574107.1		498826	62664098	XM_574107.1	LOC498826	XP_574107.1	ILMN_1367113	0000540110	S	398	TGCAATGGTCATGGTGTCTCCTCACAGAAAGGGGATGCTGACTACGACAG				20q13	PREDICTED: Rattus norvegicus similar to LRRGT00165 (LOC498826), mRNA.					
Rattus norvegicus	RefSeq	GI_62652889-S	ILMN_69173	RGD1309983_PREDICTED	XM_235571.4	XM_235571.4		315203	109481141	XM_235571.4	RGD1309983_predicted	XP_235571.4	ILMN_1352778	0004540170	S	2078	ACCGAGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTTCTGTAT	7	+	124132172-124132221	7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein 9930016O13 (predicted) (RGD1309983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665939-I	ILMN_50478	HERC4_PREDICTED	XM_574749.1	XM_574749.1		309758	62665939	XM_574749.1	Herc4_predicted	XP_574749.1	ILMN_1375947	0001940088	S	3667	GAAATGACCTGATGTGTGGGTGCATGGAAATGTTGCTTCAATCACTGGGC				20p11	PREDICTED: Rattus norvegicus hect domain and RLD 4 (predicted) (Herc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718183-S	ILMN_69683	LOC501314	XM_576727.1	XM_576727.1		501314	62718183	XM_576727.1	LOC501314	XP_576727.1	ILMN_1367974	0001940603	S	84	CATCCTTTCCTGTTCTAGGCTGGGAGAGAAACATCATCCCCTGGCACTGA					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501314), mRNA.					
Rattus norvegicus	RefSeq	GI_8394317-S	ILMN_268934	SLC6A6	NM_017206.1	NM_017206.1		29464	8394317	NM_017206.1	Slc6a6	NP_058902.1	ILMN_1365272	0006900632	S	2215	TGTACAAAAAGAAAACCCATGGGCCTATGTCCTGGGGGGAGAGGATGGAC	4	+	125945531-125945580	4q34	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (Slc6a6), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of beta-alanine, 3-aminopropanoic acid, into, out of, within or between cells [goid 1762] [evidence IEA]; The directed movement of beta-alanine, 3-aminopropanoic acid, into, out of, within or between cells [goid 1762] [evidence ISS]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of taurine into, out of, within or between cells [goid 15734] [evidence IMP]; The directed movement of taurine into, out of, within or between cells [goid 15734] [evidence IEA]; The directed movement of taurine into, out of, within or between cells [goid 15734] [evidence ISS]	Catalysis of the transfer of beta-alanine from one side of a membrane to the other. Beta-alanine is 3-aminopropanoic acid [goid 1761] [evidence IEA]; Catalysis of the transfer of beta-alanine from one side of a membrane to the other. Beta-alanine is 3-aminopropanoic acid [goid 1761] [evidence ISS]; Catalysis of the transfer of taurine from one side of the membrane to the other. Taurine (2-aminoethanesulfonic acid) is a sulphur-containing amino acid derivative which is important in the metabolism of fats [goid 5368] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: taurine(out) + Na+(out) = taurine(in) + Na+(in) [goid 5369] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: taurine(out) + Na+(out) = taurine(in) + Na+(in) [goid 5369] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with taurine [goid 30977] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647066-S	ILMN_263940	RGD1563619_PREDICTED	XM_001065041.1	XM_001065041.1		502736	109473277	XM_001065041.1	RGD1563619_predicted	XP_001065041.1	ILMN_1365409	0004610377	S	946	TATCCCTATGGGTACTCGGTCAAGAAGGCCCCAGATGCCGAGGAGCTGGA				4q22	PREDICTED: Rattus norvegicus similar to carboxypeptidase A4 (predicted) (RGD1563619_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758617-S	ILMN_278682	SERPINI1	NM_053779.1	NM_053779.1		116459	16758617	NM_053779.1	Serpini1	NP_446231.1	ILMN_1359401	0001740403	S	2410	GCACATTTTCACAGACAGAGATTAGAGAGAATCAGGGCGAAGGCAGGAGG	2	+	166554526-166554575	2q32	Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade I, member 1 (Serpini1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IDA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IDA]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	raPIT5a	raPIT5a
Rattus norvegicus	RefSeq	GI_27666307-S	ILMN_161729	LOC300308	XM_235761.1	XM_235761.1			27666307	XM_235761.1	LOC300308		ILMN_2039378	0004260546	S	1347	TAAGAGACTCCGCAAAGGAATCGGGGACTGTTTTTCAAGACTTTGCTGCT					Rattus norvegicus similar to hypothetical protein 4930509O22 (LOC300308), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31342528-S	ILMN_263518	NREP	NM_178096.2	NM_178096.2		338475	31342528	NM_178096.2	Nrep	NP_835197.1	ILMN_1357234	0002810528	S	157	CCTGTGCCTAAGGAAGTGAACCGCAAGAAGATGGATGAGCCCATCGCTGC	18	-	25842360-25842409	18p12	Rattus norvegicus neuronal regeneration related protein (Nrep), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IMP]	Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence IEA]; The regrowth of axons following their loss or damage [goid 31103] [evidence IEP]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	P311	P311
Rattus norvegicus	RefSeq	GI_61556881-S	ILMN_276827	CLIC3	NM_001013080.1	NM_001013080.1		296566	61556881	NM_001013080.1	Clic3	NP_001013098.1	ILMN_1361129	0002510397	S	770	ACCACTGGACCATGAACTGGCACAGGAGCCACACCTTTCTGAATCCCGCC	3	+	3624392-3624441	3p13	Rattus norvegicus chloride intracellular channel 3 (Clic3), mRNA.				MGC109225	MGC109225
Rattus norvegicus	RefSeq	GI_62647402-S	ILMN_65234	LOC500169	XM_575521.1	XM_575521.1		500169	62647402	XM_575521.1	LOC500169	XP_575521.1	ILMN_1358875	0006200239	S	846	GTTGCCACATATTTCTGCTTGCAGCATAGTAGTAGGCCGCACGGTGATAC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin kappa chain (LOC500169), mRNA.					
Rattus norvegicus	RefSeq	GI_62642915-S	ILMN_67737	LOC499527	XM_579975.1	XM_579975.1		499527	62642915	XM_579975.1	LOC499527	XP_579975.1	ILMN_1365605	0006400731	S	365	GCCCAACCCTGTGGATGAAGATGAGAAGAAAAGGCCCCCAGTGAGGTCTC					PREDICTED: Rattus norvegicus LOC499527 (LOC499527), mRNA.					
Rattus norvegicus	RefSeq	GI_62642919-S	ILMN_67924	LOC688622	XM_226759.4	XM_226759.4		688622	109464385	XM_226759.4	LOC688622	XP_226759.4	ILMN_1363530	0006200035	S	1811	TGACAGCGGAAGCTGGAAAGGGTCAGGAGAGCGTTTTGGGAGGAGAAGCG	2	-	43856050-43856099	2q14	PREDICTED: Rattus norvegicus similar to interleukin 31 receptor A (LOC688622), mRNA.					
Rattus norvegicus	RefSeq	GI_62643292-S	ILMN_63715	RGD1561817_PREDICTED	XM_215530.4	XM_215530.4		294917	109464674	XM_215530.4	RGD1561817_predicted	XP_215530.3	ILMN_1363025	0003870402	S	6455	ACTGCTGGGGTTATGCTGCCGAACAACACTGTCCTTACGAATTCCACAGG	2	+	116006950-116006999	2q24	PREDICTED: Rattus norvegicus similar to Traf2 and NCK interacting kinase, splice variant 4 (predicted) (RGD1561817_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506742-S	ILMN_297672	PDPN	NM_019358.1	NM_019358.1		54320	9506742	NM_019358.1	Pdpn	NP_062231.1	ILMN_1367443	0001570112	S	1723	CCGGTCTTCGTGACATACCACATCTTCCCATGAGGACTCGGTGTTGCTGG	5	-	162142330-162142379	5q36	Rattus norvegicus podoplanin (Pdpn), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; Lymph vessel formation when new vessels emerge from the proliferation of pre-existing vessels [goid 1946] [evidence ISS]; The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence ISS]; The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence ISS]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence ISS]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEP]; Any process that increases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue [goid 10572] [evidence IMP]; The directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 15884] [evidence ISS]; The directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 15884] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IDA]; The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system [goid 35239] [evidence IDA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of water (H2O) into, out of, within or between cells [goid 5372] [evidence ISS]; Enables the directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 8517] [evidence ISS]; Enables the directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 8517] [evidence ISS]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence ISS]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence ISS]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence ISS]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence ISS]	Gp38; T1-alpha; RTI40; E11; OTS-8	Gp38; T1-alpha; RTI40; E11; OTS-8
Rattus norvegicus	RefSeq	GI_62642869-S	ILMN_277131	TRIM23	XM_001064069.1	XM_001064069.1		81002	109465880	XM_001064069.1	Trim23	XP_001064069.1	ILMN_1367101	0003990021	S	1719	CAGGGCTGTGATGCTCGAAGTGGTATGGGGCTCTACGAAGGGTTGGACTG				2q13	PREDICTED: Rattus norvegicus tripartite motif protein 23, transcript variant 2 (Trim23), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IDA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence ISS]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_14717391-S	ILMN_279931	SEC31A	NM_033021.1	NM_033021.1		93646	14717391	NM_033021.1	Sec31a	NP_148981.1	ILMN_1370886	0005670736	S	4076	GCCCCTCATTAGCATGTTTCCATGGCACCCGCCACCCAGGAGCTTTGACA	14	+	10522308-10522357	14p22	Rattus norvegicus SEC31 homolog A (S. cerevisiae) (Sec31a), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93320; VAP1	MGC93320; VAP1
Rattus norvegicus	RefSeq	GI_62643252-S	ILMN_61778	TBL1XR1_PREDICTED	XM_345195.3	XM_345195.3		365755	109464635	XM_345195.3	Tbl1xr1_predicted	XP_345196.2	ILMN_1355266	0000670025	S	2342	GCATTCTTTGGAAGAGGTAGATGTTTGGTACATTTGATGGCTCCCAGAGC	2	+	107683470-107683519	2q24	PREDICTED: Rattus norvegicus transducin (beta)-like 1X-linked receptor 1 (predicted) (Tbl1xr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090390-S	ILMN_268559	MGC94282	NM_001007649.1	NM_001007649.1		297627	56090390	NM_001007649.1	MGC94282	NP_001007650.1	ILMN_1352828	0007050435	S	1474	CCTGAGTTTTTAGAGAACCCCACCTTTGTCAGCAATGTGGCAGCACGCCC	4	-	165378082-165378131	4q42	Rattus norvegicus similar to 5930416I19Rik protein (MGC94282), mRNA.					
Rattus norvegicus	RefSeq	GI_62652110-S	ILMN_52463	TRHDE	XM_345824.3	XM_345824.3		366894	109480514	XM_345824.3	Trhde	XP_345825.3	ILMN_1360825	0003130309	S	913	CCTGATAGAGAACGAGCTTTTGGGCTTCTTCCGCAGCTCCTACGTGATCC	7	-	54002745-54002794	7q22	PREDICTED: Rattus norvegicus thyrotropin-releasing hormone degrading enzyme (Trhde), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence TAS]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652108-S	ILMN_52463	TRHDE	XM_345824.3	XM_345824.3		366894	109480514	XM_345824.3	Trhde	XP_345825.3	ILMN_1350839	0002060070	S	3174	TCTCACGAGCCGTGGAAACCGTGGAAGCCAATGTGCGCTGGAAAAGGCTT	7	-	53594406-53594455	7q22	PREDICTED: Rattus norvegicus thyrotropin-releasing hormone degrading enzyme (Trhde), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence TAS]; Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain [goid 4177] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647159-S	ILMN_267673	LOC683578	XM_001067751.1	XM_001067751.1		683578	109473322	XM_001067751.1	LOC683578	XP_001067751.1	ILMN_1369758	0003710113	S	655	CTGTGCACCTGTGTGGCTGGGATCAACTTTGAGCTATCACGTTACCCACG					PREDICTED: Rattus norvegicus hypothetical protein LOC683578 (LOC683578), mRNA.					
Rattus norvegicus	RefSeq	GI_62638821	ILMN_283391	LENG1_PREDICTED	XM_001066214.1	XM_001066214.1		292535	109461044	XM_001066214.1	Leng1_predicted	XP_001066214.1	ILMN_1651101	0003290180	S	703	TCCCAGCAAGGTCAGGTGGAAATGGAAGAGACAGATGAACGGAAGCGGCG				1q12	PREDICTED: Rattus norvegicus leukocyte receptor cluster (LRC) member 1 (predicted) (Leng1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661617-S	ILMN_52228	LOC498532	XM_573802.1	XM_573802.1		498532	62661617	XM_573802.1	LOC498532	XP_573802.1	ILMN_1363784	0000580671	S	1140	GACAGGGGGCTGTGGGTTATATCGTCTTCATTTTCTGGAGATCGGGAAGG					PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC498532), mRNA.					
Rattus norvegicus	RefSeq	GI_62658110-S	ILMN_281567	RGD1560409_PREDICTED	XR_008897.1	XR_008897.1		363798	109494543	XR_008897.1	RGD1560409_predicted		ILMN_1374181	0007050021	S	426	CGCTTCCAGGAGCATACCCCCTTGGGCACTCAGAGAAGTCTGGAAATTTG				11q22	PREDICTED: Rattus norvegicus similar to rib osomal protein L31 (predicted) (RGD1560409_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605989-S	ILMN_268908	LRPPRC	NM_001008519.1	NM_001008519.1		313867	56605989	NM_001008519.1	Lrpprc	NP_001008519.1	ILMN_1373087	0000770059	S	3903	GGCCCCGGTTCTGAAGACCTTGTTAGAGCTGATTCCCGAGTTACGTGAGA	6	-	8087522-8087538:8088524-8088556	6q12	Rattus norvegicus leucine-rich PPR-motif containing (Lrpprc), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus [goid 794] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with single-stranded DNA [goid 3697] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with the microtubule constituent protein beta-tubulin [goid 48487] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]	Lrp157	Lrp157
Rattus norvegicus	RefSeq	GI_62718415-S	ILMN_58749	LOC367537	XM_578879.1	XM_578879.1		367537	62718415	XM_578879.1	LOC367537	XP_578879.1	ILMN_1352894	0001850286	S	1019	TCTGTGGATGGAGCCAAGAGAACCCTACTGGGCCCTGGGGGACATTGTGG					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC367537), mRNA.					
Rattus norvegicus	RefSeq	GI_62667038-S	ILMN_63250	LOC367880	XM_579653.2	XM_579653.2		367880	109510893	XM_579653.2	LOC367880	XP_579653.1	ILMN_1374645	0006940400	S	2468	AAACTCCCTGCTCTGAGGCCCACTGGTGCCCGCGACAGAACCAAAGCAAT	X	-	105535824-105535873	Xq32	PREDICTED: Rattus norvegicus hypothetical LOC367880 (LOC367880), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.40381	ILMN_160914	RN.40381	Rn.40381		Rn.40381		33166979	CF110778			ILMN_1530243	0001170333	S	790	GATCTAAGTCTTTGTCTTTTGTAAGGTTTGTAGAATGAATGTTGTTTTAA					Shultzomica04029 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig3575 5', mRNA					
Rattus norvegicus	RefSeq	GI_62665157-S	ILMN_262578	KCTD19_PREDICTED	XM_001075666.1	XM_001075666.1		291965	109508785	XM_001075666.1	Kctd19_predicted	XP_001075666.1	ILMN_1353387	0006040014	S	2715	GCCTTTCGCCAGAAAATATGGCCGTTGCGTGGACCTGCTCATCCAGAGGG				19q11	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 19 (predicted) (Kctd19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664617-S	ILMN_278373	RKHD2_PREDICTED	XM_001062342.1	XM_001062342.1		307271	109507486	XM_001062342.1	Rkhd2_predicted	XP_001062342.1	ILMN_1361423	0003850435	S	2855	CTAGCTGCCGTCTTGTAGATATGGACGAATGTCACCCAGCATGTGTTTCG				18q12.2	PREDICTED: Rattus norvegicus ring finger and KH domain containing 2 (predicted) (Rkhd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664576-S	ILMN_65276	LOC502170	XM_577627.1	XM_577627.1		502170	62664576	XM_577627.1	LOC502170	XP_577627.1	ILMN_1370458	0004120035	S	2535	AAGCTGCTGGTGAAAGCTTGGGTTCCTGAACTGCCAGAGAGCGAGCCCCT				18q12.1	PREDICTED: Rattus norvegicus similar to fibrillin 2 (LOC502170), mRNA.					
Rattus norvegicus	RefSeq	GI_62657872	ILMN_266028	LOC360713	XM_001066275.1	XM_001066275.1		360713	109494338	XM_001066275.1	LOC360713	XP_001066275.1	ILMN_1651157	0000460193	S	4493	CTCACTAGAACCGCACTTGTGCTTGGTGTGCACTCTAGTGCGTCCAGAAG					PREDICTED: Rattus norvegicus similar to pleckstrin homology-like domain, family B, member 2 (LOC360713), mRNA.					
Rattus norvegicus	RefSeq	GI_57527355-S	ILMN_289959	HSD17B13	XM_001065370.1	XM_001065370.1		305150	109500297	XM_001065370.1	Hsd17b13	XP_001065370.1	ILMN_1362185	0002320037	S	986	CGTGCAGAGACGTGTGGACGCCAATGACGCGAAGCCAAGTTTAGAGCGGA				14p22	PREDICTED: Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 13 (Hsd17b13), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667461-S	ILMN_291628	RGD1565514_PREDICTED	XM_001058342.1	XM_001058342.1		317614	109512755	XM_001058342.1	RGD1565514_predicted	XP_001058342.1	ILMN_1363498	0004810278	S	2699	CTCAGGCACCTGCGGACCACAAGAAAAGAGTCAAAGCTGTCTCTGCCCCT				Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933424A10 gene (predicted) (RGD1565514_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647537-S	ILMN_48544	LOC502805	XM_578304.1	XM_578304.1		502805	62647537	XM_578304.1	LOC502805	XP_578304.1	ILMN_1358191	0001770020	S	690	TGCAGCGCAATACATGCAGGAGTTCCATCAAGGTGCAGTGGCAGTGGGTT				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC502805), mRNA.					
Rattus norvegicus	RefSeq	GI_62644490-S	ILMN_280861	GBP1_PREDICTED	XM_001078913.1	XM_001078913.1		304266	109467738	XM_001078913.1	Gbp1_predicted	XP_001078913.1	ILMN_1358343	0003170008	S	2168	CTGAGCAGAGAGACAAGGATACAGCAAGTCTAATGGCAGAACAAGGGAAG				2q44	PREDICTED: Rattus norvegicus guanylate binding protein 1, interferon-inducible, 67kDa (predicted) (Gbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658377-S	ILMN_69276	RGD1307396_PREDICTED	XM_341029.3	XM_341029.3		360757	109495068	XM_341029.3	RGD1307396_predicted	XP_341030.3	ILMN_1367232	0005130441	S	1484	CTCAGGGGCAAGCACCCATGAACTTTGCTTAGTACCCTGGCACTCTGGAG	12	-	6105208-6105257	12p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330406I15 (predicted) (RGD1307396_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650693-S	ILMN_263472	RGD1304624_PREDICTED	XM_001079093.1	XM_001079093.1		314128	109479394	XM_001079093.1	RGD1304624_predicted	XP_001079093.1	ILMN_1369851	0001090035	S	1138	CCCTCGTGGGTCGAGAGATTAACATACAGCTGTCCTCCTGGGTGGAAGAG				6q23	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700097O09 (predicted) (RGD1304624_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591919-S	ILMN_279110	CRH	NM_031019.1	NM_031019.1		81648	13591919	NM_031019.1	Crh	NP_112281.1	ILMN_1358429	0005690114	S	643	CCACCTTCTGAGGGAAGTCTTGGAAATGGCCAGGGCAGAGCAGTTAGCTC	2	-	104764526-104764575	2q24	Rattus norvegicus corticotropin releasing hormone (Crh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence NAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; Any process induced by hormones that directly activates any of the steps required for cell death by apoptosis [goid 8628] [evidence IDA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA];  [goid 17045] [evidence IDA]; Interacting selectively with the protein corticotropin-releasing hormone receptor 1 (CRHR1). The CRHR1 is the major subtype in the pituitary corticotroph, and mediates the stimulatory actions of corticotropin-releasing hormone on adrenocorticotropin hormone secretion. CRHR1 are also located in cortical areas of the brain, cerebellum and limbic system [goid 51430] [evidence IDA]; Interacting selectively with the protein corticotropin-releasing hormone receptor type 2 (CRHR2). The CRHR2 has several splice variants that are located in sub-cortical areas of the brain and in the periphery [goid 51431] [evidence IDA]	CRF	CRF
Rattus norvegicus	RefSeq	GI_62662791	ILMN_281342	RGD1310414	NM_001013883.1	NM_001013883.1		290811	62078500	NM_001013883.1	RGD1310414	NP_001013905.1	ILMN_1649954	0000060332	S	1383	AACCTGCCGGCCTTTGTGAAGAAGTTGGGGATCCTAACCGCCCGGCACTT	16	-	64891845-64891872:64891945-64891966	16q12.3	Rattus norvegicus similar to hypothetical protein FLJ23263 (RGD1310414), mRNA.					
Rattus norvegicus	RefSeq	GI_62644530-S	ILMN_57924	LOC499724	XM_575057.1	XM_575057.1		499724	62644530	XM_575057.1	LOC499724	XP_575057.1	ILMN_1362490	0004920577	S	1192	CTGGCCGGACCCCAGAATCGGACCAAACACCTGTCCACTCATCAGACTTC				2q44	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004B18 (LOC499724), mRNA.					
Rattus norvegicus	RefSeq	GI_24475743-S	ILMN_279862	CUBN	NM_053332.2	NM_053332.2		80848	24475743	NM_053332.2	Cubn	NP_445784.1	ILMN_1351449	0002450086	S	10757	GTGGCATCAACACTGGGATAGCGCCCTTCTATGCTTCATCAAATCGGGTC				17q12.3	Rattus norvegicus cubilin (intrinsic factor-cobalamin receptor) (Cubn), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems [goid 6766] [evidence TAS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IDA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IMP]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]	MGA1; IFCR; GP280	MGA1; IFCR; GP280
Rattus norvegicus	RefSeq	GI_20514765-S	ILMN_276837	TEX101	NM_139037.1	NM_139037.1		207113	20514765	NM_139037.1	Tex101	NP_620606.1	ILMN_1350888	0002970253	S	788	AGACACTGGGGGCCTTGGCTAGGAGGGAGCCTTCCGCTGCTGATACCAAT	1	-	79946411-79946460	1q21	Rattus norvegicus testis expressed 101 (Tex101), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IMP]			Tec21	Tec21
Rattus norvegicus	RefSeq	GI_62655022-S	ILMN_267716	WDR75	XM_001060763.1	XM_001060763.1		314545	109487059	XM_001060763.1	Wdr75	XP_001060763.1	ILMN_1367182	0003450168	S	2247	GAGCTTCTTCACACCCCAGCTCACGTACTGCCATCAGCTTCTTTTCTGTG				9q22	PREDICTED: Rattus norvegicus WD repeat domain 75 (Wdr75), mRNA.					
Rattus norvegicus	RefSeq	GI_56090244-S	ILMN_269749	TCP11	NM_001007695.1	NM_001007695.1		309641	56090244	NM_001007695.1	Tcp11	NP_001007696.1	ILMN_1358397	0002900411	S	1861	ACCCTGGGGCTGTAGGGACCAAACATGTAAACAACCGGCCCAAACCCGCT	20	-	6283380-6283429	20p12	Rattus norvegicus t-complex protein 11 (Tcp11), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		MGC95257	MGC95257
Rattus norvegicus	RefSeq	GI_57113838-S	ILMN_286878	KCNC3	NM_053997.3	NM_053997.3		117101	57113838	NM_053997.3	Kcnc3	NP_446449.2	ILMN_1368808	0003780427	S	5159	CAGAAGCTGCCGCATGTCAACCCTCCCCCCAACAAAGAAACAGTGTCATG	1	+	95080737-95080786	1q22	Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 3 (Kcnc3), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	KShIIID	KShIIID
Rattus norvegicus	RefSeq	GI_62660031-S	ILMN_279827	RGD1564165_PREDICTED	XM_001060717.1	XM_001060717.1		305628	109500226	XM_001060717.1	RGD1564165_predicted	XP_001060717.1	ILMN_1351425	0005420594	S	3471	CCGTCGCCAAGAAGTCCAAGCACAGAGAGAAATAGAAAGGCTCACTGGTG				14p22	PREDICTED: Rattus norvegicus similar to Sarcoma antigen NY-SAR-41 (predicted) (RGD1564165_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928875-S	ILMN_279765	MEFV	NM_031634.1	NM_031634.1		58923	13928875	NM_031634.1	Mefv	NP_113822.1	ILMN_1366142	0000730100	S	2910	TCCTGCCAGTGACCAGATACTTCACCGAGCGCCCAACACTGTGCCAACAT	10	+	12069059-12069108	10q12	Rattus norvegicus Mediterranean fever (Mefv), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]; Any multimeric complex connected to a microtubule [goid 5875] [evidence ISS]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence NAS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	pyrin	pyrin
Rattus norvegicus	RefSeq	GI_9507176-S	ILMN_290252	USO1	NM_019379.1	NM_019379.1		56042	9507176	NM_019379.1	Uso1	NP_062252.1	ILMN_1358352	0002060092	S	3482	ATGGGACAGTTCAGAGTGCTTGCCGTCCAGCAGGCCACCTCTGCCTACTG	14	-	17414716-17414765	14p22	Rattus norvegicus USO1 homolog, vesicle docking protein (yeast) (Uso1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network) [goid 6891] [evidence TAS]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IPI]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence IDA]; The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi [goid 48280] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]	TAP	TAP
Rattus norvegicus	RefSeq	GI_62653811-S	ILMN_48801	LOC501011	XM_576423.1	XM_576423.1		501011	62653811	XM_576423.1	LOC501011	XP_576423.1	ILMN_1349598	0007100112	S	383	AGGCTGGGTGGGAGATGGTGGGATAGAGCGTAAAATAAAGATGGTCCAAG					PREDICTED: Rattus norvegicus similar to thymosin-like 4 (LOC501011), mRNA.					
Rattus norvegicus	RefSeq	GI_62661179-S	ILMN_65267	LOC498469	XM_579827.1	XM_579827.1		498469	62661179	XM_579827.1	LOC498469	XP_579827.1	ILMN_2038882	0005080386	S	634	CGGGGGCAAGTTTCCTAGCTACCTTCCTGAAACATAACGGCTGACTCGGC					PREDICTED: Rattus norvegicus LOC498469 (LOC498469), mRNA.					
Rattus norvegicus	RefSeq	GI_47577612-S	ILMN_265545	OLR537	NM_001000671.1	NM_001000671.1		404874	47577612	NM_001000671.1	Olr537	NP_001000671.1	ILMN_1351289	0004590114	S	688	TCTGCCAGGGGAAGTTATAAGGCCTTATCCACATGTGCCTCCCACCTAAC	3	-	70414126-70414175	3q24	Rattus norvegicus olfactory receptor 537 (Olr537), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr537	Olr537
Rattus norvegicus	RefSeq	GI_62649602-S	ILMN_60707	LOC500543	XM_575905.1	XM_575905.1		500543	62649602	XM_575905.1	LOC500543	XP_575905.1	ILMN_1351378	0000670347	S	2252	ACTGAGACGGCCCCTCTGGGATCAGCCTGACAGCTTCTCTGGAATCACCT					PREDICTED: Rattus norvegicus similar to zinc finger protein ZFEND (LOC500543), mRNA.					
Rattus norvegicus	RefSeq	GI_47577378-S	ILMN_272813	OLR608	NM_001000655.1	NM_001000655.1		404853	47577378	NM_001000655.1	Olr608	NP_001000655.1	ILMN_1355279	0005550162	S	720	TCCCACAAAGGGGGCCTTCCAAAAAGCATTATCCACCTGTGCCTCACATC	3	-	71905469-71905518	3q24	Rattus norvegicus olfactory receptor 608 (Olr608), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr608	Olr608
Rattus norvegicus	RefSeq	GI_8393140-S	ILMN_294240	CLCN5	NM_017106.1	NM_017106.1		25749	8393140	NM_017106.1	Clcn5	NP_058802.1	ILMN_1360697	0004150538	S	2025	GGAAGATGTAGAGACCATAATCAGTGAGACCACGTACAGCGGCTTTCCGG	X	+	27407674-27407723	Xq13	Rattus norvegicus chloride channel 5 (Clcn5), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	CLC5	CLC5
Rattus norvegicus	RefSeq	GI_62646727-S	ILMN_55640	RGD1305854_PREDICTED	XM_231388.4	XM_231388.4		312046	109471661	XM_231388.4	RGD1305854_predicted	XP_231388.4	ILMN_1372915	0004010181	S	1618	GTAGACCAGAGAGGAGGCGTCACTCCATGTGTGCCACAGTCATGTACCTA	4	-	22523042-22523091	4q12	PREDICTED: Rattus norvegicus similar to DBF4-related protein (predicted) (RGD1305854_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758243-S	ILMN_289924	KIF3C	NM_053486.1	NM_053486.1		85248	16758243	NM_053486.1	Kif3c	NP_445938.1	ILMN_1356741	0004070300	S	3224	GGAAAACGCATGGAATGTCATCAGGGGCACTCTCTCCTCAGTTCCTCTGG	6	+	26381038-26381087	6q14	Rattus norvegicus kinesin family member 3C (Kif3c), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651636-S	ILMN_51734	MIP	XM_343137.2	XM_343137.2		25480	62651636	XM_343137.2	Mip	XP_343138.1	ILMN_1365410	0002680441	S	1866	TTGTTGGTAAAATAGCATCGCGTTAGCAGGGGCGCAGGTGACCCTGAACG				7q11	PREDICTED: Rattus norvegicus major intrinsic protein of eye lens fiber (Mip), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; An apical plasma membrane part that forms a narrow enfolded luminal membrane channel, lined with numerous microvilli, that appears to extend into the cytoplasm of the cell. A specialized network of intracellular canaliculi is a characteristic feature of parietal cells of the gastric mucosa in vertebrates [goid 46691] [evidence IDA]	The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence ISS]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA];  [goid 15722] [evidence IDA]	The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the lens of an eye [goid 5212] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence ISS]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650519-S	ILMN_279773	HARPB64	XM_001071149.1	XM_001071149.1		298917	109479110	XM_001071149.1	Harpb64	XP_001071149.1	ILMN_1352918	0003940037	S	794	TTCCCGAGAACGAGTGGCTCAGGTCACTCACACATACCACCTCAGGTTGG				6q16	PREDICTED: Rattus norvegicus hypertrophic agonist responsive protein B64 (Harpb64), mRNA.					
Rattus norvegicus	RefSeq	GI_13786209-S	ILMN_300648	MKLN1	NM_031359.1	NM_031359.1		83536	13786209	NM_031359.1	Mkln1	NP_112649.1	ILMN_1351935	0002450538	S	2209	CTGGGCGTGGATTGAGGAGTTACTGGGCTCAGAAGTGGAGACAGGAACCG	4	+	58600538-58600587	4q22	Rattus norvegicus muskelin 1, intracellular mediator containing kelch motifs (Mkln1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_29789097-S	ILMN_290719	CACNA1E	NM_019294.1	NM_019294.1		54234	29789097	NM_019294.1	Cacna1e	NP_062167.1	ILMN_1374796	0002510164	S	7060	CCCTTTGCAAGATGGGCACTGCCATAGTCCTGCCTCTTTGCTGGGGAAAG	13	-	69367000-69367049	13q21	Rattus norvegicus calcium channel, voltage-dependent, L type, alpha 1E subunit (Cacna1e), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence TAS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a low voltage-gated channel [goid 8332] [evidence TAS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]	CACHA1E	CACHA1E
Rattus norvegicus	RefSeq	GI_62664338-S	ILMN_293042	RGD1559742_PREDICTED	XM_001068606.1	XM_001068606.1		307479	109507259	XM_001068606.1	RGD1559742_predicted	XP_001068606.1	ILMN_1354407	0005130440	S	3266	GGGCATGGAACCAAAGTTACAATGAACCATTCAACTCCTGCTGTGCAGGG				18p11	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0555 (predicted) (RGD1559742_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665408-S	ILMN_275774	RGD1565149_PREDICTED	XM_001077968.1	XM_001077968.1		307923	109508943	XM_001077968.1	RGD1565149_predicted	XP_001077968.1	ILMN_1368081	0004150735	S	1700	CCTCAGAAGAAGCTGGAGTGCATCGTGCGGACTCTGCGGGTCATCTGCAT				19q12	PREDICTED: Rattus norvegicus similar to chromosome 16 open reading frame 7 (predicted) (RGD1565149_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113810-S	ILMN_274844	V1RE10	NM_001008946.1	NM_001008946.1		494292	57113810	NM_001008946.1	V1re10	NP_001008946.1	ILMN_1349979	0001990706	S	171	TCTCTCTAAAGGAATGCCCTACACACTTGCAGATTTCGGGTTGAAGAACT	1	+	63198939-63198988	1q12	Rattus norvegicus vomeronasal 1 receptor, E10 (V1re10), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.7693	ILMN_271245	GYPC	NM_001013233.1	NM_001013233.1		364837	61557378	NM_001013233.1	Gypc	NP_001013251.1	ILMN_1530262	0001410138	S	2126	CTGCAGTAACTAACAGCACAATGGCATAATTAGAACTATAAAGCTAAAAT	18	-	24974625-24974674	18p12	Rattus norvegicus glycophorin C (Gerbich blood group) (Gypc), mRNA.				GPC; MGC124900	GPC; MGC124900
Rattus norvegicus	RefSeq	GI_62664174	ILMN_271245	GYPC	NM_001013233.1	NM_001013233.1		364837	61557378	NM_001013233.1	Gypc	NP_001013251.1	ILMN_1650650	0000870358	S	1820	ATGGCCGCCACCAGCCGAAGGAGCTTCAATTCCTCAGAATGTCGTGGGGA	18	-	24974931-24974980	18p12	Rattus norvegicus glycophorin C (Gerbich blood group) (Gypc), mRNA.				GPC; MGC124900	GPC; MGC124900
Rattus norvegicus	RefSeq	GI_34882200-S	ILMN_278568	LOC291521	XR_008809.1	XR_008809.1		291521	109522287	XR_008809.1	LOC291521		ILMN_1353854	0006650039	S	336	GACCCATCTCGCAAGAGCCATGGTTGGCCGAGCGGTGGAGCATAAATTTG					PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC291521), mRNA.					
Rattus norvegicus	RefSeq	GI_62647783	ILMN_272487	CHCHD6_PREDICTED	XM_001072660.1	XM_001072660.1		297436	109473845	XM_001072660.1	Chchd6_predicted	XP_001072660.1	ILMN_1651136	0002510368	S	558	GGCGGCTTCAAAAGCAGAGAGCACAATAAAGCCCCGCAGAGTGGAGCCTG				4q34	PREDICTED: Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain containing 6 (predicted), transcript variant 1 (Chchd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652838-I	ILMN_66606	TTLL1_PREDICTED	XM_576320.1	XM_576320.1		362969	62652838	XM_576320.1	Ttll1_predicted	XP_576320.1	ILMN_1375649	0003060097	S	1330	AACACACAACCCTGACCCCTTGGCCAGCAGCACCACAGGAGAAGAGAGCT				7q34	PREDICTED: Rattus norvegicus tubulin tyrosine ligase-like 1 (predicted) (Ttll1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13162356-S	ILMN_288449	DAB2	NM_024159.1	NM_024159.1		79128	13162356	NM_024159.1	Dab2	NP_077073.1	ILMN_1355383	0004150176	S	3009	GGGCCCCACATTGTTTTCATTCCAGACACTTTGCAGCTGTTTGACCCTGA	2	+	55736295-55736344	2q16	Rattus norvegicus disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) (Dab2), mRNA.	An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history [goid 904] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The process whereby cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes [goid 6907] [evidence ISS]; The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds [goid 7588] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]	Doc2; Doc-2	Doc2; Doc-2
Rattus norvegicus	RefSeq	GI_33469060-S	ILMN_266978	MYRIP	NM_182844.1	NM_182844.1		360034	33469060	NM_182844.1	Myrip	NP_878264.1	ILMN_1370776	0000780324	S	2481	ACAAGGCTCCTCCACAAACAGGCCCACGGCAAGTACCAGTAACACCAAGG				8q32	Rattus norvegicus myosin VIIA and Rab interacting protein (Myrip), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments [goid 17022] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Slac2c	Slac2c
Rattus norvegicus	RefSeq	GI_62665880-S	ILMN_70415	BCR_PREDICTED	XM_228091.4	XM_228091.4		309696	109509355	XM_228091.4	Bcr_predicted	XP_228091.4	ILMN_1352177	0006380487	S	3544	GAGGCCATCCCTGCCCCTGACAGCAAGAGACAGAGCATCCTGTTTTCCAC	20	-	13973147-13973196	20p12	PREDICTED: Rattus norvegicus breakpoint cluster region (predicted) (Bcr_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667334-S	ILMN_56895	LOC315920	XM_236523.3	XM_236523.3		315920	62667334	XM_236523.3	LOC315920	XP_236523.3	ILMN_1371880	0001690014	S	1027	CCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCCAGCCGCATCAGTG				Xq35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930405J24 (LOC315920), mRNA.					
Rattus norvegicus	RefSeq	GI_25742759-S	ILMN_273142	AMH	NM_012902.1	NM_012902.1		25378	25742759	NM_012902.1	Amh	NP_037034.1	ILMN_1359997	0003060435	S	1586	TCATCAGCCTGTCGGAGGAGCACATCAGCGCGCACCACGTGCCCAACATG	7	-	10417351-10417400	7q11	Rattus norvegicus anti-Mullerian hormone (Amh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure [goid 1655] [evidence IDA]; The process by which the Mullerian ducts, primordia of the oviducts, uterus and upper vagina, undergo regression in male embryos [goid 1880] [evidence TAS]; The process whose specific outcome is the progression of the gonadal mesoderm over time, from its formation to the mature structure. The gonadal mesoderm is the middle layer of the three primary germ layers of the embryo which will go on to form the gonads of the organism [goid 7506] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP]	Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	MIS	MIS
Rattus norvegicus	RefSeq	GI_6981091-S	ILMN_266439	IL15	NM_013129.1	NM_013129.1		25670	6981091	NM_013129.1	Il15	NP_037261.1	ILMN_1349842	0006110164	S	935	GTCTGGCTGCAAGGAATGTGAGGAGCTGGAGGAGAGAAACTTCACGGAGT	19	+	27498874-27498923	19q11	Rattus norvegicus interleukin 15 (Il15), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence TAS]; The expansion of a NK T cell population by cell division [goid 1866] [evidence ISS]; The expansion of a NK T cell population by cell division [goid 1866] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]; The process of T cell selection that occurs in extrathymic locations, often resulting T cells of distinct specificities from those selected in the thymus [goid 45062] [evidence ISS]; The process of T cell selection that occurs in extrathymic locations, often resulting T cells of distinct specificities from those selected in the thymus [goid 45062] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence ISS]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence IMP]; Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism [goid 50691] [evidence ISS]; Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism [goid 50691] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]; The expansion of a NK T cell population by cell division [goid 1866] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]; The process of T cell selection that occurs in extrathymic locations, often resulting T cells of distinct specificities from those selected in the thymus [goid 45062] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]; Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism [goid 50691] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]; The expansion of a NK T cell population by cell division [goid 1866] [evidence IEA]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]; The process of T cell selection that occurs in extrathymic locations, often resulting T cells of distinct specificities from those selected in the thymus [goid 45062] [evidence IEA]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence IEA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]; Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism [goid 50691] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50778] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA];  [goid 5126] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40255310-I	ILMN_286008	SHANK2	NM_133441.1	NM_133441.1		171093	40255310	NM_133441.1	Shank2	NP_597685.1	ILMN_1375384	0002810692	I	103	GGCACTGCTCACATGAGGATCACCGCCAGAGGTAGCCGGTTCTGAGAGCA	1	+	204586465-204586514	1q41	Rattus norvegicus SH3/ankyrin domain gene 2 (Shank2), transcript variant 4, mRNA.	The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16293618] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Spank-3; ProSAP1; CortBP1	Spank-3; ProSAP1; CortBP1
Rattus norvegicus	RefSeq	GI_57012365-S	ILMN_284203	KRT84	NM_001008812.1	NM_001008812.1		315320	57012365	NM_001008812.1	Krt84	NP_001008812.1	ILMN_1371950	0003290193	S	1604	GTCATGGACGCAGGGCCATCAGTGTCCCAAGACTGTGTGTCCTCAGCAGA	7	-	140282015-140282064	7q36	Rattus norvegicus keratin 84 (Krt84), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641594-S	ILMN_48263	RGD1310052_PREDICTED	XM_219477.4	XM_219477.4		309105	109459590	XM_219477.4	RGD1310052_predicted	XP_219477.4	ILMN_1349672	0002900270	S	3013	CGACTTCGACATTTCTACCACCACTATCACTCAAAGCGAGGCATGTGGGC	1	+	201270813-201270862	1q41	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40362 (predicted) (RGD1310052_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665203-S	ILMN_266064	CDH3	XM_001076282.1	XM_001076282.1		116777	109508826	XM_001076282.1	Cdh3	XP_001076282.1	ILMN_1373499	0004920026	S	2864	GTTTTCATAAAGAGGCTCAGGGTGGGGCAGGGTGCAGACATCAGTCTCCC				19q12	PREDICTED: Rattus norvegicus cadherin 3, type 1, P-cadherin (placental) (Cdh3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655431-S	ILMN_69269	LOC501188	XM_576616.1	XM_576616.1		501188	62655431	XM_576616.1	LOC501188	XP_576616.1	ILMN_1367060	0003850242	S	7	ACCTGCTCTCCGCCGGAGAGTGGGCTCTGCGGTTCCGGCGCGCCCATGGT					PREDICTED: Rattus norvegicus similar to RGD1309973_predicted protein (LOC501188), mRNA.					
Rattus norvegicus	RefSeq	GI_62640989-A	ILMN_296396	LMO3	NM_139112.1	NM_139112.1		245979	20806164	NM_139112.1	Lmo3	NP_620812.1	ILMN_1376311	0002370537	S	107	GCTGGAGCCGCTTGAATACTATGGTTTTGGACCAAGAGGACGGTGTGCCG	1	-	166711069-166711077:166741403-166741424:166741425-166741443	1q33	Rattus norvegicus LIM domain only 3 (Lmo3), mRNA.				Dat1	Dat1
Rattus norvegicus	RefSeq	GI_62654796-S	ILMN_293932	COL19A1_PREDICTED	XM_001072067.1	XM_001072067.1		367236	109486886	XM_001072067.1	Col19a1_predicted	XP_001072067.1	ILMN_1350822	0004210079	S	3301	CCTCAAGGACCCCCAGGACCCAGTGGAAGATGCAGTCCAGAAGATTGCCT					PREDICTED: Rattus norvegicus procollagen, type XIX, alpha 1 (predicted) (Col19a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664001-S	ILMN_69367	LOC498812	XM_574096.1	XM_574096.1		498812	62664001	XM_574096.1	LOC498812	XP_574096.1	ILMN_1365162	0002060300	S	609	GTGAAGAAGAACCATGCCCATGGCTGGGACTGTGGTCTCGACCATGACTG					PREDICTED: Rattus norvegicus similar to pappalysin 2 isoform 1 (LOC498812), mRNA.					
Rattus norvegicus	RefSeq	GI_62078976-S	ILMN_275639	PDIA5	NM_001014125.1	NM_001014125.1		360722	62078976	NM_001014125.1	Pdia5	NP_001014147.1	ILMN_1350619	0005570338	S	1414	CTGTGTCAGCAGGAGTCCGTGAAGGCCTACCCCACCTTCCACTATTACCA	11	+	67203432-67203481	11q22	Rattus norvegicus protein disulfide isomerase family A, member 5 (Pdia5), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644756-S	ILMN_70192	LCN3_PREDICTED	XM_231034.3	XM_231034.3		311788	62644756	XM_231034.3	Lcn3_predicted	XP_231034.3	ILMN_1373290	0004730168	S	399	CTCATCATCAGGTCTCTCAAAGCCAGAGATATTTTGGCCACAGGGAGCTG					PREDICTED: Rattus norvegicus lipocalin 3 (predicted) (Lcn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660429-S	ILMN_70143	ATP8A1_PREDICTED	XM_223390.4	XM_223390.4		289615	109499662	XM_223390.4	Atp8a1_predicted	XP_223390.4	ILMN_1357741	0002900113	S	2337	TAAACGAAGGCTCTCTTGACGGCACAAGGGAAACGCTCAGCCGCCACTGC	14	+	43079949-43079968:43102607-43102636	14p11	PREDICTED: Rattus norvegicus ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 (predicted) (Atp8a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660431-S	ILMN_70143	ATP8A1_PREDICTED	XM_223390.4	XM_223390.4		289615	109499662	XM_223390.4	Atp8a1_predicted	XP_223390.4	ILMN_1364800	0000730215	S	3482	GCTCGAAGCAAAATCTCAAGACCCAGGCGCAGTCGTACTTGGCAAAAGCC	14	+	43157124-43157171:43163506-43163507	14p11	PREDICTED: Rattus norvegicus ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 (predicted) (Atp8a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978754-S	ILMN_293604	DCC	NM_012841.1	NM_012841.1		25311	6978754	NM_012841.1	Dcc	NP_036973.1	ILMN_1361757	0004210332	S	4613	GGCGAGTTTGGAAGGGCTAATGAAGCAACTCAATGCCATCACGGGCTCCG	18	-	68027058-68027107	18q12.2	Rattus norvegicus deleted in colorectal carcinoma (Dcc), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IMP]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IMP]; The process by which the anatomical structures of the spinal cord ventral commissure are generated and organized. Morphogenesis pertains to the creation of form [goid 21965] [evidence ISS]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IMP]; A transmembrane receptor activity that responds to the netrin family of ligands and results in chemotaxis when activated [goid 5042] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_50582610-S	ILMN_274580	VPS33A	NM_022961.2	NM_022961.2		65081	50582610	NM_022961.2	Vps33a	NP_075250.1	ILMN_1366105	0000780450	S	2855	GAGCGCCAAGTGGCAGACCAAGTTGATGGTTTTCTGTCATCACCCAAGTC	12	+	34190455-34190504	12q16	Rattus norvegicus vacuolar protein sorting 33A (yeast) (Vps33a), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]	The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The process by which platelets bud from long processes extended by megakaryocytes [goid 30220] [evidence ISS]; Any process that modulates the frequency, rate or extent of the deposition of coloring matter occurring during development [goid 48070] [evidence ISS]; The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]		r-Vps33a	r-Vps33a
Rattus norvegicus	RefSeq	GI_11559940-S	ILMN_302168	AQP6	NM_022181.1	NM_022181.1		29170	11559940	NM_022181.1	Aqp6	NP_071517.1	ILMN_1354810	0002940121	S	836	TGTTTCCTGACACCAAGACCGTAGCCCAGCGATTGGCCATCCTTGTGGGT	7	+	138349722-138349771	7q36	Rattus norvegicus aquaporin 6, kidney specific (Aqp6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of nitrate into, out of, within or between cells [goid 15706] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of nitrate ions (NO3-) from one side of a membrane to the other [goid 15112] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_47576074-S	ILMN_296225	OLR1414	NM_001000782.1	NM_001000782.1		405060	47576074	NM_001000782.1	Olr1414	NP_001000782.1	ILMN_1361698	0002690309	S	771	TGGGCCAGCCATGATCATCTACATGACCCCTGACTCTTTCCACACTCCAG	10	-	44113536-44113585	10q22	Rattus norvegicus olfactory receptor 1414 (Olr1414), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1414	Olr1414
Rattus norvegicus	RefSeq	GI_52138738-S	ILMN_269982	HEXA	NM_001004443.1	NM_001004443.1		300757	52138738	NM_001004443.1	Hexa	NP_001004443.1	ILMN_1353399	0005050484	S	1450	GCCCAGAGCAGGTGCCATTGCCGAAAGACTGTGGAGCAGTAACCTGACGA	8	+	63387002-63387051	8q24	Rattus norvegicus hexosaminidase A (Hexa), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues [goid 6689] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues [goid 6689] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties [goid 30203] [evidence ISS]; The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties [goid 30203] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence ISS]; Any process by which an organism voluntarily modulates its posture, the alignment of its anatomical parts [goid 50884] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]	Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence ISS]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	MGC95289	MGC95289
Rattus norvegicus	RefSeq	GI_47575906-S	ILMN_282653	OLR1462	NM_001001097.1	NM_001001097.1		405993	47575906	NM_001001097.1	Olr1462	NP_001001097.1	ILMN_1368079	0000580204	S	544	TTCTGCGAGGTGCCAGCCATGATCAAGCTGTCCTGTGCTGATACAACCGC	10	-	45880482-45880531	10q22	Rattus norvegicus olfactory receptor 1462 (Olr1462), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1462	Olr1462
Rattus norvegicus	RefSeq	GI_62665658-A	ILMN_269420	RT1-DB1	NM_001008884.1	NM_001008884.1		294270	57114285	NM_001008884.1	RT1-Db1	NP_001008884.1	ILMN_1376459	0006400364	S	687	TAAGAAGATGAGTGGAGTCGGGGGCATCGTGCTGGGTCTGCTCTTCCTGG	20	-	4672668-4672717	20p12	Rattus norvegicus RT1 class II, locus Db1 (RT1-Db1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen [goid 42613] [evidence IEA]	The process by which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex [goid 2504] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RT1-Db; RT1-D beta; RT1-Db1n; MGC105710	RT1-Db; RT1-D beta; RT1-Db1n; MGC105710
Rattus norvegicus	RefSeq	GI_62641440-S	ILMN_63441	LOC365353	XM_344952.2	XM_344952.2		365353	62641440	XM_344952.2	LOC365353	XP_344953.2	ILMN_1371771	0001780133	S	3385	CAGAGAGGATGCAGAGGAGAGATTCAAAGTGGTTTGAAAAGGGCCCCTCC					PREDICTED: Rattus norvegicus similar to transcription enhancer factor (LOC365353), mRNA.					
Rattus norvegicus	RefSeq	GI_62078844-S	ILMN_266120	RGD1304879	NM_001014056.1	NM_001014056.1		312301	62078844	NM_001014056.1	RGD1304879	NP_001014078.1	ILMN_1357455	0006100576	S	1328	GAACATAGGCGCACACACACGGGTGAGAAGCCATTTCCATGTACCCAGTG	4	+	76091833-76091882	4q24	Rattus norvegicus similar to Zinc finger protein 398 (Zinc finger DNA binding protein p52/p71) (RGD1304879), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC109278	MGC109278
Rattus norvegicus	RefSeq	GI_27666631-S	ILMN_54470	B3GNT4_PREDICTED	XM_222292.2	XM_222292.2		288752	109495885	XM_222292.2	B3gnt4_predicted	XP_222292.1	ILMN_1348938	0001170121	S	903	CCCCATTGATGATGTCTTTGTGGGGATGTGCCTGAGGAAGCTGGGGGTGA	12	-	34210080-34210129	12q16	PREDICTED: Rattus norvegicus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 (predicted) (B3gnt4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643598-S	ILMN_55352	LOC502523	XM_578007.1	XM_578007.1		502523	62643598	XM_578007.1	LOC502523	XP_578007.1	ILMN_1352462	0003060520	S	313	CGCCGCAGGGCTCGCGTCCGAAAAGTTTTGAGCAGCGTGGCTTTAGAATG					PREDICTED: Rattus norvegicus similar to ribosomal protein L24 (LOC502523), mRNA.					
Rattus norvegicus	RefSeq	GI_16758907-S	ILMN_291852	RAB8A	NM_053998.1	NM_053998.1		117103	16758907	NM_053998.1	Rab8a	NP_446450.1	ILMN_1371143	0000780390	S	383	TCTTCCGGTGCAGTCTCCTGTGAGGACAAGGTCTCTGCCCATTTGAGCCT	16	-	18079609-18079633:18079634-18079658	16p14	Rattus norvegicus RAB8A, member RAS oncogene family (Rab8a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC124948; Rab8; Mel	MGC124948; Rab8; Mel
Rattus norvegicus	RefSeq	GI_8394468-S	ILMN_270683	TNNI3	NM_017144.1	NM_017144.1		29248	8394468	NM_017144.1	Tnni3	NP_058840.1	ILMN_1372553	0003290324	S	633	GGTGAAGAAGGAGGACATTGAGAAGGAAAACCGGGAGGTGGGAGACTGGC	1	+	68030864-68030887:68031735-68031760	1q12	Rattus norvegicus troponin I type 3 (cardiac) (Tnni3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence TAS]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IEA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence ISS]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IDA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence IDA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence IDA]	The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IEA]; The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence ISS]; The process that modulates blood pressure by the detection of carbon dioxide levels in the brain stem. Increased levels activate the sympathetic vasoconstrictor mechanism increasing the force with which blood flows through the circulatory system [goid 1980] [evidence IEA]; The process that modulates blood pressure by the detection of carbon dioxide levels in the brain stem. Increased levels activate the sympathetic vasoconstrictor mechanism increasing the force with which blood flows through the circulatory system [goid 1980] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence TAS]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IEA]; Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence ISS]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IMP]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that stops or reduces the rate of ATP hydrolysis by an ATPase [goid 32780] [evidence IEA]; Any process that stops or reduces the rate of ATP hydrolysis by an ATPase [goid 32780] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IMP]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IEA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; The inhibition of the passage of calcium ions through a calcium channel; the function of some venoms [goid 19855] [evidence IEA]; The inhibition of the passage of calcium ions through a calcium channel; the function of some venoms [goid 19855] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with troponin C, the calcium-binding subunit of the troponin complex [goid 30172] [evidence IEA]; Interacting selectively with troponin C, the calcium-binding subunit of the troponin complex [goid 30172] [evidence ISS]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence IEA]; Interacting selectively with troponin T, the tropomyosin-binding subunit of the troponin complex [goid 31014] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]	TnI; cTNI	TnI; cTNI
Rattus norvegicus	RefSeq	GI_62665403	ILMN_275289	RGD1561507_PREDICTED	XM_001077812.1	XM_001077812.1		292078	109508937	XM_001077812.1	RGD1561507_predicted	XP_001077812.1	ILMN_1650504	0002850438	S	424	GGCCCATACTACCGACACAGGAGCCCCAGCACAATAGCAGCCTATGAGGT				19q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31606 (predicted) (RGD1561507_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_17939355-S	ILMN_295551	SYTL4	NM_080410.1	NM_080410.1		140594	17939355	NM_080410.1	Sytl4	NP_536335.1	ILMN_1360267	0005670519	S	1827	CAGCAATGACTTCCTGGGAGGGGTCAGACTGGGTGTTGGCACTGGGATCA	X	-	121473556-121473562:121475715-121475757	Xq34	Rattus norvegicus synaptotagmin-like 4 (Sytl4), mRNA.	Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Loosely bound to one surface of the plasma membrane, but not integrated into the hydrophobic region [goid 19897] [evidence ISS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence ISS]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IEA]; Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865589-A	ILMN_288732	LIG3	NM_001012011.1	NM_001012011.1		303369	58865589	NM_001012011.1	Lig3	NP_001012011.1	ILMN_1376660	0005080093	S	3491	CCTCCGCCTCTTTATGGTCTCTTCTGGATCGGGAGTTAGCTGCTGTGGAC	10	+	71021040-71021089	10q26	Rattus norvegicus ligase III, DNA, ATP-dependent (Lig3), nuclear gene encoding mitochondrial protein, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction [goid 6310] [evidence IEA]; The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS) [goid 33151] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m) [goid 3910] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657207-S	ILMN_289771	WDR68_PREDICTED	XM_221032.3	XM_221032.3		303602	62657207	XM_221032.3	Wdr68_predicted	XP_221032.3	ILMN_1362979	0005670373	S	1400	AGAAGCTGCTGTAGAAGTCCAGGCCAGTTACCCCGCTGTCTGTGTTGGAC	10	+	95451088-95451137	10q32.1	PREDICTED: Rattus norvegicus WD repeat domain 68 (predicted) (Wdr68_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656117-S	ILMN_284304	LOC691259	XM_001077421.1	XM_001077421.1		691259	109488139	XM_001077421.1	LOC691259	XP_001077421.1	ILMN_1360700	0001450377	S	723	CTCCACGAGCCACCGTTACTTCACAAACCTCCGTTACCCCATCGACCAGC	10	+	44029043-44029092	10q22	PREDICTED: Rattus norvegicus hypothetical protein LOC691259 (LOC691259), mRNA.					
Rattus norvegicus	RefSeq	GI_62664948-S	ILMN_69542	LOC291914	XM_214651.3	XM_214651.3		291914	62664948	XM_214651.3	LOC291914	XP_214651.1	ILMN_1358761	0000450672	S	870	CCATCTGCTTGACATCCCCACAGCTCCTTAAACTGACTGCTACGGGTGCC				19p11	PREDICTED: Rattus norvegicus similar to CG8009-PA (predicted) (LOC291914), mRNA.					
Rattus norvegicus	RefSeq	GI_13928927-S	ILMN_291467	NAPSA	NM_031670.1	NM_031670.1		60575	13928927	NM_031670.1	Napsa	NP_113858.1	ILMN_1374896	0001400019	S	1240	CGCAAGCGCAGTTCCTCAGAAGACGCCCTGGTTAGGGTACATACACACAG	1	+	95062685-95062710:95062711-95062734	1q22	Rattus norvegicus napsin A aspartic peptidase (Napsa), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Kdap	Kdap
Rattus norvegicus	RefSeq	GI_62643567-S	ILMN_276645	NMD3_PREDICTED	XM_001067083.1	XM_001067083.1		310512	109466802	XM_001067083.1	Nmd3_predicted	XP_001067083.1	ILMN_1363371	0003290333	S	1319	GACCGTACCAAACGCCAGCGCCGTAGAAACTGGAAACTGAAAGAGCTTGC				2q32	PREDICTED: Rattus norvegicus NMD3 homolog (S. cerevisiae) (predicted) (Nmd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576360-S	ILMN_266306	OLR1545	NM_001001105.1	NM_001001105.1		406001	47576360	NM_001001105.1	Olr1545	NP_001001105.1	ILMN_1354133	0004280204	S	750	TGGCCCACTTCTATTCATGTATGTGCGTCCTGCACCTCCACAGGTAGGAG	11	+	42134083-42134132	11q12	Rattus norvegicus olfactory receptor 1545 (Olr1545), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1545	Olr1545
Rattus norvegicus	RefSeq	GI_47576362-S	ILMN_266306	OLR1545	NM_001001105.1	NM_001001105.1		406001	47576360	NM_001001105.1	Olr1545	NP_001001105.1	ILMN_1366027	0003520288	S	683	CTATCAAAAGCATAAAGAAAGCTGTTTCCACCTGTGGAGCCCATCTCCTC	11	+	42134016-42134065	11q12	Rattus norvegicus olfactory receptor 1545 (Olr1545), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1545	Olr1545
Rattus norvegicus	RefSeq	GI_62643881-S	ILMN_289183	LYSMD1	NM_001024302.1	NM_001024302.1		499671	66730316	NM_001024302.1	Lysmd1	NP_001019473.1	ILMN_1371049	0006980433	S	1662	CCACAGAGTGGCAGACCAAGCTAAAGGGTAGGGGCTAAGTAACTCCCCGA	2	+	190044267-190044316	2q34	Rattus norvegicus LysM, putative peptidoglycan-binding, domain containing 1 (Lysmd1), mRNA.		The chemical reactions and pathways resulting in the breakdown of a cell wall [goid 16998] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_56605839-S	ILMN_263764	RAC2	NM_001008384.1	NM_001008384.1		366957	56605839	NM_001008384.1	Rac2	NP_001008385.1	ILMN_1365800	0000630373	S	1162	GCTGACCCCTACAGTCTCTCAAGGCTTCCTATGCTACTCGAAGGGTGGGG	7	-	116520157-116520206	7q34	Rattus norvegicus ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) (Rac2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence IEA]; Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30031] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence IDA]; Any process that modulates the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals [goid 60263] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC105983	MGC105983
Rattus norvegicus	RefSeq	GI_8394148-S	ILMN_271543	ACOX1	NM_017340.1	NM_017340.1		50681	8394148	NM_017340.1	Acox1	NP_059036.1	ILMN_1363410	0006420278	S	3364	GGCCTTGAACTCTGATCCTCACAGCCTGGTAAATGCTGGGCCTACAGGTG	10	-	106280487-106280536	10q32.3	Rattus norvegicus acyl-Coenzyme A oxidase 1, palmitoyl (Acox1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; A fatty acid beta-oxidation pathway in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed from oxidation pass directly to oxygen and produce H2O2, which is cleaved by peroxisomal catalases [goid 33540] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 5504] [evidence IDA]; Catalysis of the reaction: palmitoyl-CoA + O2 = trans-2,3-dehydropalmitoyl-CoA + H2O2 [goid 16401] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor [goid 3995] [evidence IEA]; Catalysis of the reaction: acyl-CoA + O2 = trans-2,3-dehydroacyl-CoA + H2O2 [goid 3997] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]	RATACOA1	RATACOA1
Rattus norvegicus	RefSeq	GI_62640771-S	ILMN_294491	PRC1_PREDICTED	XM_001061201.1	XM_001061201.1		308761	109462135	XM_001061201.1	Prc1_predicted	XP_001061201.1	ILMN_1359126	0003940082	S	2686	GGGTGGGTTGGGCCATTTCTGTCATGGACTCCACAACTTTGCACATCTCC				1q31	PREDICTED: Rattus norvegicus protein regulator of cytokinesis 1 (predicted) (Prc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662876-S	ILMN_52655	LOC306577	XM_224972.3	XM_224972.3		306577	62662876	XM_224972.3	LOC306577	XP_224972.3	ILMN_1373471	0001340072	S	1479	CCGGAAGCTCCAGTGAAGGTCTGGAAGCACCCTTTGGCCTGTTTAATCTG					PREDICTED: Rattus norvegicus similar to expressed sequence BB049667 (LOC306577), mRNA.					
Rattus norvegicus	RefSeq	GI_62649806-S	ILMN_281826	HMGN2	NM_001025624.1	NM_001025624.1		114637	71043775	NM_001025624.1	Hmgn2	NP_001020795.1	ILMN_1351955	0006940121	S	828	CTATTGGGCGACGTGGACTTTGCAGTGACTTCGCGTGTTCTCGGAAGATC	5	-	152712474-152712523	5q36	Rattus norvegicus high mobility group nucleosomal binding domain 2 (Hmgn2), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	Hmg17; MGC116347; MGC124667	Hmg17; MGC116347; MGC124667
Rattus norvegicus	RefSeq	GI_40018533-S	ILMN_271566	PNO1	NM_199083.1	NM_199083.1		289809	40018533	NM_199083.1	Pno1	NP_954514.1	ILMN_1368377	0004730114	S	1111	AATCGGTTCTTGGTACTGGGCACTGACTCTCCCTCCGGGTTGGGTCGTGG	14	-	98102771-98102820	14q22	Rattus norvegicus partner of NOB1 homolog (S. cerevisiae) (Pno1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]		Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651947-S	ILMN_267394	RGD1561748_PREDICTED	XM_234953.3	XM_234953.3		299652	62651947	XM_234953.3	RGD1561748_predicted	XP_234953.3	ILMN_1363456	0002360300	S	1053	AGATGACCCTAGGGACATACCAGGGGTCCCCTCCAGGCCAGAGAAGCTTT	7	-	15386010-15386059	7q12	PREDICTED: Rattus norvegicus similar to zinc finger and SCAN domain containing 4 (predicted) (RGD1561748_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661672-S	ILMN_55218	LOC498542	XM_573813.1	XM_573813.1		498542	62661672	XM_573813.1	LOC498542	XP_573813.1	ILMN_1356059	0002350180	S	1055	CTCCCCGTGGCTTACCACCTTACTGCATTCCATTTTAGGACCACTGGTGG					PREDICTED: Rattus norvegicus similar to envelope protein (LOC498542), mRNA.					
Rattus norvegicus	RefSeq	GI_6980983-S	ILMN_263022	GRIN2B	NM_012574.1	NM_012574.1		24410	6980983	NM_012574.1	Grin2b	NP_036706.1	ILMN_1366396	0003850010	S	5148	GAGCGAGGCTTTCCTGATGCTGCTCTCTTTGTTCAGGTGAGGAAGCGAAG	4	-	172721956-172722005	4q43	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate 2B (Grin2b), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released [goid 43083] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence ISS]; Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast [goid 1967] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process whose specific outcome is the progression of sensory organs over time, from its formation to the mature structure [goid 7423] [evidence ISS]; The process whose specific outcome is the progression of sensory organs over time, from its formation to the mature structure [goid 7423] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence TAS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IDA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IMP]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of glutamate [goid 14049] [evidence IDA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; The response of an organism to a perceived external threat [goid 42596] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence ISS]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence IEA]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IDA]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence IEA]; Any process that modulates the establishment or extent of the postsynaptic membrane potential, which is generated by changes in the membrane potential of the post synaptic neuron that receives information at a synapse. The presynaptic neuron releases neurotransmitters into the synaptic cleft which bind to receptors on the postsynaptic neuron. After being bound by the neurotransmitters, these receptors can open or close an ion channel, allowing ions to enter or leave the cell and therefore altering the membrane potential of the postsynaptic neuron [goid 60078] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IEA]; Interacting selectively with a D2 dopamine receptor [goid 31749] [evidence IPI]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_8394363-S	ILMN_298392	SSR4	NM_017199.1	NM_017199.1		29435	8394363	NM_017199.1	Ssr4	NP_058895.1	ILMN_1370483	0006180592	S	426	TGGAGCCTGGAGCACAAGAGCGCCCATGCAGGCACCTATGAGGTCAGATT	X	+	159713551-159713600	Xq37	Rattus norvegicus signal sequence receptor, delta (Ssr4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A translocation complex that constitutes the specific site of protein translocation across the endoplasmic reticulum, which involves the signal recognition particle receptor. Composed of a heterotetramer of alpha, beta, gamma and delta subunits (translocon-associated proteins or TRAPs). In yeast it is a heterotrimeric complex consisting of Sec61p, Sbh1p, and Sss1p. The Sec61 complex functions in cotranslational and posttranslational translocation events [goid 5784] [evidence IDA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62339309-S	ILMN_275934	PCDHB10_PREDICTED	XM_001055526.1	XM_001055526.1		291649	109506477	XM_001055526.1	Pcdhb10_predicted	XP_001055526.1	ILMN_1360765	0006220139	S	2181	CGCGGGATCCCGTGCAAGATGATGAGGATGTGCTTACACTGTACCTGGTC	18	+	30224326-30224375	18p11	PREDICTED: Rattus norvegicus protocadherin beta 10 (predicted) (Pcdhb10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978706-I	ILMN_301817	CREM	NM_013086.1	NM_013086.1		25620	6978706	NM_013086.1	Crem	NP_037218.1	ILMN_1375583	0004570066	I	469	TGACTTGGACCTGGTTGACTGTGAACTCTAATCGGGGCAGGCGATGCAGC	17	+	62836031-62836080	17q12.1	Rattus norvegicus cAMP responsive element modulator (Crem), transcript variant 1, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; A series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response [goid 19933] [evidence TAS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence IEP]; The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands [goid 48384] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	CREM-17X; Icer	CREM-17X; Icer
Rattus norvegicus	RefSeq	GI_62661012-S	ILMN_51660	LOC498439	XM_579824.1	XM_579824.1		498439	62661012	XM_579824.1	LOC498439	XP_579824.1	ILMN_1359350	0000610576	S	347	CGGGGACGCCGCCCACTCCACCGGTATGAAGCTAAAATGCAGTGGTTACA					PREDICTED: Rattus norvegicus LOC498439 (LOC498439), mRNA.					
Rattus norvegicus	RefSeq	GI_40018539-S	ILMN_277852	DDX24	NM_199119.1	NM_199119.1		373065	40018539	NM_199119.1	Ddx24	NP_954550.1	ILMN_1351266	0004070154	S	2715	CTGTTGTGGAGTGAGTGTGGTAGGCAGCGCCGTGTCTGTATCAGTGTGCG	6	-	127699491-127699540	6q32	Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 (Ddx24), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742824-S	ILMN_301229	PI4KA	NM_022301.1	NM_022301.1		64161	25742824	NM_022301.1	Pi4ka	NP_071637.1	ILMN_1373337	0000430398	S	6292	TAAGCCTGGGTGTGGAGGTGACAGGCACATGGAACTTGGATGCACAGGTG	11	+	85726307-85726356	11q23	Rattus norvegicus phosphatidylinositol 4-kinase, catalytic, alpha (Pi4ka), mRNA.	The lipid bilayer surrounding a vesicle associated with the Golgi apparatus [goid 30660] [evidence IDA]	The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]	Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate [goid 4430] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27706331-S	ILMN_278577	FAM166A	NM_001025694.1	NM_001025694.1		311797	71043671	NM_001025694.1	Fam166a	NP_001020865.1	ILMN_1358295	0004590731	S	1139	TGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAGGT	3	+	3385734-3385780:3386204-3386206	3p13	Rattus norvegicus family with sequence similarity 166, member A (Fam166a), mRNA.					
Rattus norvegicus	RefSeq	GI_9625028-S	ILMN_300438	RBBP9	NM_019219.2	NM_019219.2		29459	9625028	NM_019219.2	Rbbp9	NP_062092.2	ILMN_1373298	0002630136	S	1696	AGAACTTTTCCAGGGCTAGGGAGAAGGCTGACAGTCAAGAGGCTACTGAG	3	-	133091332-133091381	3q41	Rattus norvegicus retinoblastoma binding protein 9 (Rbbp9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	MGC124617	MGC124617
Rattus norvegicus	RefSeq	GI_6978874-S	ILMN_299338	GAST	NM_012849.1	NM_012849.1		25320	6978874	NM_012849.1	Gast	NP_036981.1	ILMN_1373795	0006590433	S	91	GCTACCTTCTCGGAAGCTTCTTGGAAACCTCGCTCCCAGCTACAGGATGC	10	+	89275726-89275775	10q32.1	Rattus norvegicus gastrin (Gast), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IDA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	PPG34; Gas	PPG34; Gas
Rattus norvegicus	RefSeq	GI_62651725-S	ILMN_56406	DOT1L_PREDICTED	XM_343159.2	XM_343159.2		362831	62651725	XM_343159.2	Dot1l_predicted	XP_343160.2	ILMN_1371999	0001450112	S	6143	CGCACCACAGGCCAGCACCTCGGGGCCATCTGCTGTAATTAGGACTTCTA				7q11	PREDICTED: Rattus norvegicus DOT1-like, histone H3 methyltransferase (S. cerevisiae) (predicted) (Dot1l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654324-S	ILMN_51453	LOC301004	XM_217277.3	XM_217277.3		301004	62654324	XM_217277.3	LOC301004	XP_217277.3	ILMN_1372097	0000510601	S	1676	CCCTGCCTTTAATCCCAGCACAGGGGTAGAGGTGGTTCTGAAGGACGTGC				8q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20259 (predicted) (LOC301004), mRNA.					
Rattus norvegicus	RefSeq	GI_47576354-S	ILMN_301151	OLR1541	NM_001000728.1	NM_001000728.1		404983	47576354	NM_001000728.1	Olr1541	NP_001000728.1	ILMN_1367442	0001050132	S	697	GGCATAAAGAAAGCTTTATCCACCTGCGGAGCCCATCTCCTCTCTGTATC	11	+	42043524-42043573	11q12	Rattus norvegicus olfactory receptor 1541 (Olr1541), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1541	Olr1541
Rattus norvegicus	RefSeq	GI_62646354-S	ILMN_275032	UBE2C_PREDICTED	XM_001070446.1	XM_001070446.1		296368	109471309	XM_001070446.1	Ube2c_predicted	XP_001070446.1	ILMN_1366278	0000870270	S	212	CCGAATCAGACAACCTGTTCAAATGGGTAGGAACCATCCATGGAGCCGCC				3q42	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2C (predicted) (Ube2c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651187-S	ILMN_266618	RGD1560932_PREDICTED	XM_001066988.1	XM_001066988.1		500711	109479892	XM_001066988.1	RGD1560932_predicted	XP_001066988.1	ILMN_1369535	0002690487	S	345	GAGGCCGGTCCGCCGGAGCCTCAAGACACCAGAAGAAATAGAAAGATTGA				6q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 8430415E04 (predicted) (RGD1560932_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978498-S	ILMN_291634	ANP32A	NM_012903.1	NM_012903.1		25379	6978498	NM_012903.1	Anp32a	NP_037035.1	ILMN_1356509	0004730026	S	780	AGAAGGGAGTCAGAAGCGAAAACGAGAGCCCGATGACGAGGGCCAAGAGG	8	+	66523184-66523233	8q24	Rattus norvegicus acidic (leucine-rich) nuclear phosphoprotein 32 family, member A (Anp32a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence TAS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence TAS]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]	MGC105504; LANP; Anp32	MGC105504; LANP; Anp32
Rattus norvegicus	RefSeq	GI_62656318-S	ILMN_60175	ZBTB4_PREDICTED	XM_220612.4	XM_220612.4		287441	109488381	XM_220612.4	Zbtb4_predicted	XP_220612.4	ILMN_1357587	0007040040	S	5433	CATGTGACCTGGGGAGAAGGGAAAAAGTGGGAAGCTACTGGTTCTGTGCC	10	+	56602336-56602385	10q24	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 4 (predicted) (Zbtb4_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.13503	ILMN_160574	LOC288469	Rn.13503		Rn.13503		62658436	XM_221895	LOC288469		ILMN_1530449	0000610156	S	1417	ATCATTGAGAAATATTTATATGAGGTGAGTAACAAAAGTCCCATGTTCTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930431E10 (predicted) (LOC288469),					
Rattus norvegicus	RefSeq	GI_62641014-S	ILMN_283895	RGD1307366_PREDICTED	XM_001066026.1	XM_001066026.1		293148	109462478	XM_001066026.1	RGD1307366_predicted	XP_001066026.1	ILMN_1372103	0006770504	S	5772	TTGCCAAGTGATGGGAAACCAACCACAGTGCCTTCCACCCCCCACACCTC				1q32	PREDICTED: Rattus norvegicus similar to CG32425-PA (predicted) (RGD1307366_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659318-S	ILMN_61723	PIK3C2B_PREDICTED	XM_213879.3	XM_213879.3		289021	62659318	XM_213879.3	Pik3c2b_predicted	XP_213879.3	ILMN_1373504	0001230450	S	5178	TTGTGTCAAGGGAGCAATGCCTGCTCTGGGGTGTGTGGAGTGCGGGCAAT				13q13	PREDICTED: Rattus norvegicus phosphoinositide-3-kinase, class 2, beta polypeptide (predicted) (Pik3c2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650580-S	ILMN_66780	PRKAR2B	XM_343046.3	XM_343046.3		24679	109478117	XM_343046.3	Prkar2b	XP_343047.1	ILMN_1353803	0004730347	S	3241	CGGAAACCAATGCCTGTGGAATAAAGAGCCCCAACCAAGGCTACAGAGGC	6	-	50235050-50235099	6q16	PREDICTED: Rattus norvegicus protein kinase, cAMP dependent regulatory, type II beta (Prkar2b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer [goid 5952] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence IEA]; Modulation of the activity of the enzyme cAMP-dependent protein kinase [goid 8603] [evidence ISS]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647864-S	ILMN_64177	LOC500266	XM_575616.1	XM_575616.1		500266	62647864	XM_575616.1	LOC500266	XP_575616.1	ILMN_1361971	0006590731	S	1347	GCTGCTCCACCGCGCTATTAAGACTCTGGCAGGATGGTAGGATGTAGATC				4q34	PREDICTED: Rattus norvegicus similar to TAFA1 protein (LOC500266), mRNA.					
Rattus norvegicus	RefSeq	GI_56605785-S	ILMN_296724	TMEM111	NM_001008355.1	NM_001008355.1		312640	56605785	NM_001008355.1	Tmem111	NP_001008356.1	ILMN_1364187	0001170164	S	1792	GACAGGGTGCCATTTCTGTACCAAGAGGTGGGTGTGACTGCATGTTAAGC	4	-	149405798-149405847	4q42	Rattus norvegicus transmembrane protein 111 (Tmem111), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	MGC94540; RGD1311566	MGC94540; RGD1311566
Rattus norvegicus	RefSeq	GI_62642632-S	ILMN_288217	LOC309362	XM_001060754.1	XM_001060754.1		309362	109463989	XM_001060754.1	LOC309362	XP_001060754.1	ILMN_1358569	0003840711	S	5733	TGTGCCTAATGAGACCTCGAACCCAAGGCTGGAAGGTGATCGCTAAACCC					PREDICTED: Rattus norvegicus similar to Dynamin-binding protein (Scaffold protein Tuba) (LOC309362), mRNA.					
Rattus norvegicus	RefSeq	GI_62638224-S	ILMN_270297	SHPRH_PREDICTED	XM_001069964.1	XM_001069964.1		308282	109460447	XM_001069964.1	Shprh_predicted	XP_001069964.1	ILMN_1365567	0000840025	S	4955	GAGCGGATGCAGGCAATGCTAAAGACTGCTGAGAGGAGCCACACCAGCTC				1p13	PREDICTED: Rattus norvegicus SNF2 histone linker PHD RING helicase (predicted) (Shprh_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13786151-S	ILMN_292031	BCL10	NM_031328.1	NM_031328.1		83477	13786151	NM_031328.1	Bcl10	NP_112618.1	ILMN_1350965	0007050010	S	1383	CCTCAGTCTTGGCCTGAAGAATGTTATCCCGGCAGGGCGCTCCTTGTAAT	2	+	244126239-244126288	2q44	Rattus norvegicus B-cell CLL/lymphoma 10 (Bcl10), mRNA.	An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence ISS]; A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains [goid 42101] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated [goid 46696] [evidence ISS]; A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated [goid 46696] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of mature B cell apoptosis [goid 2906] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; A defense response that is mediated by cells [goid 6968] [evidence ISS]; A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus [goid 9620] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31398] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8 [goid 45416] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8 [goid 45416] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell [goid 50852] [evidence ISS]; Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell [goid 50856] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Increases the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19209] [evidence ISS]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence ISS]; Interacting selectively with a ubiquitin protein ligase enzyme, any of the E3 proteins [goid 31625] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with protein kinase B, an intracellular kinase that is important in regulating glucose metabolism [goid 43422] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]; Interacting selectively with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters [goid 51059] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62666873-S	ILMN_287214	TBL1X_PREDICTED	XM_001057805.1	XM_001057805.1		302711	109511821	XM_001057805.1	Tbl1x_predicted	XP_001057805.1	ILMN_1365469	0003140020	S	2884	GGCAGCTGGTGGGGAAGAAAGAGCCCACTGGTTAGGCATCAAGCAGAATG				Xq22	PREDICTED: Rattus norvegicus transducin (beta)-like 1 X-linked (predicted) (Tbl1x_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718512-S	ILMN_65416	LOC501409	XM_576821.1	XM_576821.1		501409	62718512	XM_576821.1	LOC501409	XP_576821.1	ILMN_1353047	0003850397	S	642	GCTTTCTACAGGGCGGGAATCCGTCTTCCACCCGTGCACAGGGCAGGAAT					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC501409), mRNA.					
Rattus norvegicus	RefSeq	GI_54020738-S	ILMN_285867	LOC56764	NM_020089.2	NM_020089.2		56764	54020738	NM_020089.2	LOC56764	NP_064474.1	ILMN_1357816	0002260180	S	1890	CATGTCCATGCCTCGTGGATTTGGTGCTTGGTGATGGCAATAAAACACGG	2	-	244844153-244844202	2q44	Rattus norvegicus dnaj-like protein (LOC56764), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642970-S	ILMN_70362	FBXO4_PREDICTED	XM_227090.4	XM_227090.4		310363	109464446	XM_227090.4	Fbxo4_predicted	XP_227090.4	ILMN_1372547	0003780154	S	901	AAGATGTTCAGCCTACAGAGCGAGGGAGACGAGCAACAGGGGAGCCGCTA	2	-	53877082-53877131	2q16	PREDICTED: Rattus norvegicus F-box only protein 4 (predicted) (Fbxo4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651600-S	ILMN_274757	LOC366780	XM_001070902.1	XM_001070902.1		366780	109479989	XM_001070902.1	LOC366780	XP_001070902.1	ILMN_1375189	0002100408	S	604	GGGGACAAACCAGAGTCAACAGCAGCCATAGGGGACAAACCAGAGTCAGC					PREDICTED: Rattus norvegicus similar to H39E23.3 (LOC366780), mRNA.					
Rattus norvegicus	RefSeq	GI_62660520-S	ILMN_55678	LOC498374	XM_573609.2	XM_573609.2		498374	109499741	XM_573609.2	LOC498374	XP_573609.1	ILMN_1368258	0002480341	S	928	GATGCACATCAATCAAGAGCTGCTGGTCATCCAGAAAGACCGTGCATGTG	14	+	49657086-49657135	14q11	PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC498374), mRNA.					
Rattus norvegicus	RefSeq	GI_61557198-S	ILMN_271238	HES6	NM_001013179.1	NM_001013179.1		316626	61557198	NM_001013179.1	Hes6	NP_001013197.1	ILMN_1366743	0001340093	S	1159	CTAGGGCAGAAGTGGCCAATCTTGAGGCTGAGCATGAGTGTCCTGGGCAG	9	-	90640070-90640119	9q36	Rattus norvegicus hairy and enhancer of split 6 (Drosophila) (Hes6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657733-S	ILMN_65082	LOC304104	XM_221669.3	XM_221669.3		304104	62657733	XM_221669.3	LOC304104	XP_221669.3	ILMN_1356329	0006510044	S	6972	CCACACGATGCACTGGAGGGATTGGAGCAGACGATTCCTTGTCAGTCCTG				11q11	PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0539 (predicted) (LOC304104), mRNA.					
Rattus norvegicus	RefSeq	GI_16758955-S	ILMN_265926	FRAG1	NM_053895.1	NM_053895.1		116675	16758955	NM_053895.1	Frag1	NP_446347.1	ILMN_1352381	0005910079	S	1545	TTCTCCGTCTGGGGACTGGGAGAGAAGAGCAGGAAGGGTAGGACAAGGCT	1	+	159722396-159722445	1q32	Rattus norvegicus FGF receptor activating protein 1 (Frag1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence ISS]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	PGAP2	PGAP2
Rattus norvegicus	RefSeq	GI_62659476-S	ILMN_49793	LOC289084	XM_213896.2	XM_213896.2		289084	62659476	XM_213896.2	LOC289084	XP_213896.1	ILMN_1357784	0003130358	S	1984	TGGAGGATGTGAAAGCCAAAAGCCCCTGGTGGTGGGGAGTGTCGATTGTG				13q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025G04 gene (predicted) (LOC289084), mRNA.					
Rattus norvegicus	RefSeq	GI_62667476-S	ILMN_64673	LOC294611	XM_238208.3	XM_238208.3		294611	62667476	XM_238208.3	LOC294611	XP_238208.3	ILMN_1358170	0002810463	S	1000	AAGCAGGATGCAGCCCAGAGCCAATGCGCGTGCCCAGTCCCATACCTTTT					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC294611), mRNA.					
Rattus norvegicus	RefSeq	GI_20302076-S	ILMN_302426	GPR149	NM_138891.1	NM_138891.1		192251	20302076	NM_138891.1	Gpr149	NP_620246.1	ILMN_1353576	0006980358	S	3589	AGGAGTCCATGACCAGATTAATTTCTCCAAACACCTTATCGGCACACTGC	2	-	152176544-152176593	2q31	Rattus norvegicus G protein-coupled receptor 149 (Gpr149), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Ieda	Ieda
Rattus norvegicus	RefSeq	GI_62651955-S	ILMN_68130	RGD1561644_PREDICTED	XM_578646.2	XM_578646.2		503126	109480347	XM_578646.2	RGD1561644_predicted	XP_578646.2	ILMN_1358211	0000840041	S	1993	GCCAAGTTCCTGACATTTAGCATGCTGGTGTTCTGCAGTGTCTGGATCAC	7	+	16486688-16486737	7q12	PREDICTED: Rattus norvegicus similar to V2r2 protein (predicted) (RGD1561644_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659510-S	ILMN_51465	HMCN1_PREDICTED	XM_222716.4	XM_222716.4		289094	109498008	XM_222716.4	Hmcn1_predicted	XP_222716.4	ILMN_1374553	0006100021	S	17062	TACACGTCCACTACGAGAGGCAGAGACCTACCGCATGAAGGTGCGGGCTT	13	-	65297781-65297830	13q21	PREDICTED: Rattus norvegicus hemicentin 1 (predicted) (Hmcn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393443-S	ILMN_69129	GJB1	NM_017251.2	NM_017251.2		29584	82617584	NM_017251.2	Gjb1	NP_058947.1	ILMN_1374229	0002970008	S	1389	GGAAAAGGAGGACACATCTAGGGTGGGGGAGTTCTGGAGGGAGAAGCAGG	X	+	89456652-89456701	Xq31	Rattus norvegicus gap junction protein, beta 1 (Gjb1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IMP]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IDA]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence TAS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell [goid 15868] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IDA]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IDA]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence ISS]	Cx32	Cx32
Rattus norvegicus	RefSeq	GI_62652101-S	ILMN_52114	HRB2_PREDICTED	XM_235128.3	XM_235128.3		314830	62652101	XM_235128.3	Hrb2_predicted	XP_235128.2	ILMN_1352398	0004760168	S	795	ACACCTTTCCCTCCCCCACAGCCCGAAAGTCAGGTTGACAAAGAACTGGC					PREDICTED: Rattus norvegicus HIV-1 Rev binding protein 2 (predicted) (Hrb2_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.12033	ILMN_161576	RN.12033	Rn.12033		Rn.12033		50386872	CO574243			ILMN_1530342	0002940440	S	542	AAGTAACCTTCAAAGGCAAATAAATGACCTAATTAAAAAACACAAAAGCC					AGENCOURT_28542805 NIH_MGC_248 Rattus norvegicus cDNA clone IMAGE:7373644 5', mRNA					
Rattus norvegicus	RefSeq	GI_62664485-S	ILMN_266222	RGD1312005_PREDICTED	XM_001056569.1	XM_001056569.1		291580	109507350	XM_001056569.1	RGD1312005_predicted	XP_001056569.1	ILMN_1352103	0006220333	S	651	GCCACTGCCCTTTAGACGTGAGCGTTGCCTGTATTATGTTGGCCTCTCTG				18q12.1	PREDICTED: Rattus norvegicus similar to DD1 (predicted) (RGD1312005_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646126-S	ILMN_69497	MYH7B_PREDICTED	XM_230774.4	XM_230774.4		311570	109469094	XM_230774.4	Myh7b_predicted	XP_230774.4	ILMN_1365040	0005390497	S	5807	TGCAGAGCAAGGTCAAGAGCTACAAGCGTCAGTTTGAGGAGGCGGAGCAG	3	+	146138637-146138680:146139077-146139082	3q42	PREDICTED: Rattus norvegicus myosin, heavy polypeptide 7B, cardiac muscle, beta (predicted) (Myh7b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664182-S	ILMN_68926	STARD4_PREDICTED	XM_214592.4	XM_214592.4		291699	109506419	XM_214592.4	Stard4_predicted	XP_214592.4	ILMN_1354580	0004120519	S	911	ACCACCCCTGCGGCTGGTTCTGTGTTCCACTCAAAGACAGTCCAAACCAG	18	-	25643014-25643063	18p12	PREDICTED: Rattus norvegicus StAR-related lipid transfer (START) domain containing 4 (predicted) (Stard4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592024-S	ILMN_269581	PGGT1B	NM_031082.1	NM_031082.1		81746	13592024	NM_031082.1	Pggt1b	NP_112344.1	ILMN_1363355	0000730465	S	1242	CAGAAGCGTGTACTGCTAGTTCTTCAGGATATGCTCTTAGGCCAGTGACC	18	-	40410327-40410376	18q11	Rattus norvegicus protein geranylgeranyltransferase type I, beta subunit (Pggt1b), mRNA.	A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane [goid 5953] [evidence TAS]	The covalent attachment of a geranylgeranyl moiety to a protein amino acid [goid 18348] [evidence TAS]	Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor) [goid 4659] [evidence IEA]; Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families [goid 4662] [evidence TAS]; Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families [goid 4662] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27720598-S	ILMN_275885	PLEKHQ1_PREDICTED	XR_009100.1	XR_009100.1		315764	109484895	XR_009100.1	Plekhq1_predicted		ILMN_1365831	0000110619	S	1546	CCCTGGGCTAGTGCAGAAACGGAAGGAGCTGGTGACCCTCTACAGGAGAA				8q24	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family Q member 1 (predicted) (Plekhq1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577122-S	ILMN_264283	OLR326	NM_001000248.1	NM_001000248.1		293764	47577122	NM_001000248.1	Olr326	NP_001000248.1	ILMN_1368933	0004230601	S	746	TGGCAGTGACCATGCTGTTTGGGACAGCACTTTTCATGTACCTGCGGCCC	1	-	214975655-214975704	1q43	Rattus norvegicus olfactory receptor 326 (Olr326), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr326	Olr326
Rattus norvegicus	RefSeq	GI_34878284-S	ILMN_61551	LOC364825	XM_344654.1	XM_344654.1		364825	34878284	XM_344654.1	LOC364825	XP_344655.1	ILMN_1354086	0006590184	S	201	GCATCCGACGCTGGGCTCTCACTAACTGTCAACCTTGCTGCATTCTGTGA					PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC364825), mRNA.					
Rattus norvegicus	RefSeq	GI_62665338-S	ILMN_278378	RGD1560949_PREDICTED	XM_001078650.1	XM_001078650.1		292057	109508970	XM_001078650.1	RGD1560949_predicted	XP_001078650.1	ILMN_1361910	0004590301	S	611	GCCTCAACTGGAGCCTGGGGGATCCTGACATTGAAGTTGTTGATGTGGCC					PREDICTED: Rattus norvegicus similar to testis nuclear RNA-binding protein-like (predicted) (RGD1560949_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643409-S	ILMN_291657	RGD1307595_PREDICTED	XM_215558.2	XM_215558.2		295019	62643409	XM_215558.2	RGD1307595_predicted	XP_215558.2	ILMN_1365618	0004780332	S	443	GCTGTCTCGGACCGCCGGGAACATTTCTGATCGAAGCAGCAGGAACAAGC	2	-	137166499-137166532:137169250-137169265	2q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700018B24 (predicted) (RGD1307595_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643519-S	ILMN_270915	LOC295091	XM_001064105.1	XM_001064105.1		295091	109466733	XM_001064105.1	LOC295091	XP_001064105.1	ILMN_1362785	0004560022	S	2673	GGCCTCAACCTCTGTGAGCAGTGAGCTTAACACCACAGTCTCCACTGTTC				2q31	PREDICTED: Rattus norvegicus putative pheromone receptor V2R2B (LOC295091), mRNA.					
Rattus norvegicus	RefSeq	GI_62659990-S	ILMN_267584	CD34_PREDICTED	XM_001070343.1	XM_001070343.1		305081	109499316	XM_001070343.1	Cd34_predicted	XP_001070343.1	ILMN_1364231	0001580494	S	1137	GAAAGGCTGGGTGAAGACCCTTATTACACGGAGAATGGTGGAGGCCAGGG				13q27	PREDICTED: Rattus norvegicus CD34 antigen (predicted) (Cd34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664011-S	ILMN_51288	LOC498814	XM_574098.1	XM_574098.1		498814	62664011	XM_574098.1	LOC498814	XP_574098.1	ILMN_1357609	0002810056	S	971	GCGCTCAAGGGATTCTGGGAGGGAAAGACGAGTCGCACCTCTGATTGGCA				18p13	PREDICTED: Rattus norvegicus similar to p13MTCP1 (LOC498814), mRNA.					
Rattus norvegicus	RefSeq	Rn.7630	ILMN_62857	ETNK1_PREDICTED	XM_232515.4	XM_232515.4		312828	109472828	XM_232515.4	Etnk1_predicted	XP_232515.4	ILMN_1530435	0001500093	S	901	AATATAATCTACAACGAGAAACAAGGTGACGTACAGTTCATTGATTATGA	4	+	181082766-181082790:181091855-181091879	4q44	PREDICTED: Rattus norvegicus ethanolamine kinase 1 (predicted) (Etnk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659965-S	ILMN_265111	RGD1561646_PREDICTED	XM_001068406.1	XM_001068406.1		498311	109499288	XM_001068406.1	RGD1561646_predicted	XP_001068406.1	ILMN_1358611	0002690400	S	1971	GACATTGGAGAAAACCGATGTGAACGCCGTCATGGAGACAGAGGATGGCC				13q27	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1561646_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665830-I	ILMN_68079	PCBP3_PREDICTED	XM_574735.1	XM_574735.1		294336	62665830	XM_574735.1	Pcbp3_predicted	XP_574735.1	ILMN_1376092	0005900154	S	927	CTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTGATGGGCCAGTCGTC				20p12	PREDICTED: Rattus norvegicus poly(rC) binding protein 3 (predicted) (Pcbp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981487-S	ILMN_266875	RPS26	NM_013224.1	NM_013224.1		27139	6981487	NM_013224.1	Rps26	NP_037356.1	ILMN_1369103	0006940068	S	37	GGAGAAACAACGGTCGTGCCAAAAAGGGCCGCGGCCATGTGCAACCAATT	7	-	1920394-1920443	7q11	Rattus norvegicus ribosomal protein S26 (Rps26), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662982-S	ILMN_293497	RGD1311612_PREDICTED	XM_001076059.1	XM_001076059.1		361184	109504490	XM_001076059.1	RGD1311612_predicted	XP_001076059.1	ILMN_1349416	0006770022	S	1934	GTGACGCACTCCGCCAGGACCTCATGACCCACGGCATCAATGTTAAGGAC				16q12.5	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12118 (predicted) (RGD1311612_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078962-S	ILMN_269440	UTP14A	NM_001014113.2	NM_001014113.2		317579	71896548	NM_001014113.2	Utp14a	NP_001014135.2	ILMN_1370255	0004610717	S	2191	CCAAGCCAGGCCATATTATCAAGCCCATAACAGCAGACGATGTGGGTCGC				Xq35	Rattus norvegicus UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) (Utp14a), mRNA.	A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins [goid 32040] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34881911-S	ILMN_269440	UTP14A	NM_001014113.2	NM_001014113.2		317579	71896548	NM_001014113.2	Utp14a	NP_001014135.2	ILMN_1371924	0004480411	S	407	GGTTGAACGGGTCCACAGAGAAGTGGCCTTCAGTAACACTTCACAAGCCC	X	+	134643611-134643621:134643724-134643762	Xq35	Rattus norvegicus UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) (Utp14a), mRNA.	A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]; A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins [goid 32040] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_34866577-S	ILMN_69428	RGD1564131_PREDICTED	XM_576270.2	XM_576270.2		500871	109480791	XM_576270.2	RGD1564131_predicted	XP_576270.1	ILMN_1350551	0000060014	S	845	CAGGAACGCTTGACTGCTGGCAGAAGATCGCTTGAGATGAAGGAAGCACG	7	-	93948177-93948192:93948193-93948226	7q32	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (predicted) (RGD1564131_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652441-S	ILMN_69428	RGD1564131_PREDICTED	XM_576270.2	XM_576270.2		500871	109480791	XM_576270.2	RGD1564131_predicted	XP_576270.1	ILMN_1363471	0006620484	S	1107	AAAAATGAGAAGCAATAATATTCATCTGACCAGAATATTAATATTTAATA	7	-	93947915-93947964	7q32	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (predicted) (RGD1564131_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660804-S	ILMN_278123	UPP1	NM_001030025.1	NM_001030025.1		289801	71795614	NM_001030025.1	Upp1	NP_001025196.1	ILMN_1370862	0004280068	S	872	ACCATGTGCAGTGCCTGTGGCCTGAAAGCGGCTGTGGTGTGTGTCACTCT	14	+	89668610-89668637:89669425-89669446	14q21	Rattus norvegicus uridine phosphorylase 1 (Upp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6220] [evidence IEA]; The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6220] [evidence ISS]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates) [goid 9166] [evidence IEA]; The chemical reactions and pathways involving uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids [goid 46108] [evidence IEA]; The chemical reactions and pathways involving uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids [goid 46108] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: uridine + phosphate = uracil + alpha-D-ribose 1-phosphate [goid 4850] [evidence ISS]; Catalysis of the reaction: uridine + phosphate = uracil + alpha-D-ribose 1-phosphate [goid 4850] [evidence IEA]; Catalysis of the reaction: uridine + phosphate = uracil + alpha-D-ribose 1-phosphate [goid 4850] [evidence ISS]	MGC124655	MGC124655
Rattus norvegicus	RefSeq	GI_62640730-S	ILMN_51613	LOC499184	XM_574477.1	XM_574477.1		499184	62640730	XM_574477.1	LOC499184	XP_574477.1	ILMN_1371330	0004590504	S	217	ACAGAGGCTCCTGGAAAGAGCGGCCCAGATCTTCCCGGTTGCTGCCAAGG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC499184), mRNA.					
Rattus norvegicus	RefSeq	GI_58219519-A	ILMN_289599	GMCL1	NM_001010956.2	NM_001010956.2		312516	76781466	NM_001010956.2	Gmcl1	NP_001010956.1	ILMN_1376730	0004060167	S	1658	GGTACGTGTGCTTCTGCGCTTGCGTCTTGTGTGTTAGCACTCTCTGAGGC	4	-	120851455-120851468:120851469-120851504	4q34	Rattus norvegicus germ cell-less homolog 1 (Drosophila) (Gmcl1), transcript variant 2, mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Gcl	Gcl
Rattus norvegicus	RefSeq	GI_16758315-S	ILMN_291864	PIP4K2B	NM_053550.1	NM_053550.1		89812	16758315	NM_053550.1	Pip4k2b	NP_446002.1	ILMN_1349115	0003130368	S	1845	GAGAGGTCAGACACCTCAGTCAGCGACGTTTTAATCTCCCCTCGATGGAC	10	-	86464299-86464348	10q31	Rattus norvegicus phosphatidylinositol-5-phosphate 4-kinase, type II, beta (Pip4k2b), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence ISS]; The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16308] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16308] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 5-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16309] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648839-S	ILMN_66412	LOC500444	XM_575806.1	XM_575806.1		500444	62648839	XM_575806.1	LOC500444	XP_575806.1	ILMN_1363113	0004810408	S	3335	CAAGGCAGCGGGAGACCTTGGAGAAGGGGATGCTGGTCTTTTGCTTTCCC					PREDICTED: Rattus norvegicus similar to hypothetical protein 4931430D02 (LOC500444), mRNA.					
Rattus norvegicus	RefSeq	GI_7106245-S	ILMN_295555	ALPL	NM_013059.1	NM_013059.1		25586	7106245	NM_013059.1	Alpl	NP_037191.1	ILMN_1372113	0006550195	S	2217	AAGAACAACCCAGCCGGACAGGACGCACACACTCCCCACCCAGCTCCAGA	5	-	156501883-156501932	5q36	Rattus norvegicus alkaline phosphatase, liver/bone/kidney (Alpl), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms [goid 46677] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence TAS]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence ISS]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence IDA]; Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 4035] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC93545; PHOA; Akp2	MGC93545; PHOA; Akp2
Rattus norvegicus	RefSeq	GI_62646453-S	ILMN_279250	RAE1	NM_001033708.1	NM_001033708.1		362281	76096355	NM_001033708.1	Rae1	NP_001028880.1	ILMN_1353777	0000730242	S	1401	GAAGTCGGGGTCTCGAGGGGATCATGAGCAGCAGTGTGTACTTGACAGCG	3	+	163877840-163877889	3q42	Rattus norvegicus RAE1 RNA export 1 homolog (S. pombe) (Rae1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]			MGC125198; MGC124870	MGC125198; MGC124870
Rattus norvegicus	RefSeq	GI_62640777-S	ILMN_53727	LOC499192	XM_579931.1	XM_579931.1		499192	62640777	XM_579931.1	LOC499192	XP_579931.1	ILMN_2039481	0003290608	S	491	GTTGATGGCATTGATGACTGCAGATTTCGTGCACTTCTGCCGTGGTCCGG					PREDICTED: Rattus norvegicus LOC499192 (LOC499192), mRNA.					
Rattus norvegicus	RefSeq	GI_47577196-S	ILMN_264293	OLR741	NM_001000575.1	NM_001000575.1		366120	47577196	NM_001000575.1	Olr741	NP_001000575.1	ILMN_1363772	0000730592	S	534	CCTCCAGCCATTATTCAAGCTGGCTTGTACTGACACATTTGTGGAAAGTG	3	-	74680185-74680234	3q24	Rattus norvegicus olfactory receptor 741 (Olr741), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr741	Olr741
Rattus norvegicus	RefSeq	GI_31343428-S	ILMN_268870	LHX9	NM_181367.2	NM_181367.2		289048	31343428	NM_181367.2	Lhx9	NP_852032.1	ILMN_2039374	0005860315	S	868	GACCAGCAGCCTTACCCACCTTCCCAGAAGACCAAACGGATGCGAACTTC	13	-	52144946-52144995	13q13	Rattus norvegicus LIM homeobox 9 (Lhx9), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IEA]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence IEA]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence ISS]; The process by which the anatomical structures of the gonads are generated and organized. A gonad is an animal organ producing gametes, e.g. the testes or the ovary in mammals [goid 35262] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC156570	MGC156570
Rattus norvegicus	RefSeq	GI_47577148-S	ILMN_270209	OLR336	NM_001000759.1	NM_001000759.1		405032	47577148	NM_001000759.1	Olr336	NP_001000759.1	ILMN_1349954	0003450286	S	760	GGATCAGGACTGTTTGTCTATATGCTCCCCAACTCTGACAGTTCTCAGGG	1	+	215286158-215286207	1q43	Rattus norvegicus olfactory receptor 336 (Olr336), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr336	Olr336
Rattus norvegicus	RefSeq	GI_12083676-S	ILMN_283791	PIP	NM_022708.1	NM_022708.1		64673	12083676	NM_022708.1	Pip	NP_073199.1	ILMN_1358925	0005080390	S	375	AAGGTATCTGCCCTAATAACGTCGCAGTGGTGCCCATCTCAGGAAACCGG	4	+	69637586-69637635	4q23	Rattus norvegicus prolactin induced protein (Pip), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_27694190-S	ILMN_161780	LOC289529	XM_223286.1	XM_223286.1			27694190	XM_223286.1	LOC289529		ILMN_2040842	0006580204	S	1998	CCCATGTGGGTACCTCCACTTTCATGTCTGTGGCTCCCTTCCTGACCCCT										
Rattus norvegicus	RefSeq	GI_62643049-S	ILMN_297751	LOC499542	XM_574865.1	XM_574865.1		499542	62643049	XM_574865.1	LOC499542	XP_574865.1	ILMN_1353518	0001770450	S	424	CTAGCTGGAGCAGTGAGTAAAGGCTCAGGGACACTCTGTGGTGTCAAGCT	2	-	61133077-61133126	2q16	PREDICTED: Rattus norvegicus LRRGT00178 (LOC499542), mRNA.					
Rattus norvegicus	RefSeq	GI_62664340-S	ILMN_285963	SCGB3A2	NM_001024283.1	NM_001024283.1		498854	66730536	NM_001024283.1	Scgb3a2	NP_001019454.1	ILMN_1357314	0003610487	S	225	GTAGAACATCTGGTGGAAGGGCTGAAGAAGTGCGTGAATGAGCTGGGGCC	18	+	37202897-37202946	18p11	Rattus norvegicus secretoglobin, family 3A, member 2 (Scgb3a2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_55741852-S	ILMN_286381	EIF4H	NM_001006957.1	NM_001006957.1		288599	55741852	NM_001006957.1	Eif4h	NP_001006958.1	ILMN_1373095	0006380092	S	2238	CTCCAATGCGGAAAAGACAGAACAGGCACGTCCATCCACACTGCTGGGCG	12	+	23164806-23164855	12q12	Rattus norvegicus eukaryotic translation initiation factor 4H (Eif4h), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]	MGC94887	MGC94887
Rattus norvegicus	RefSeq	GI_42558271-S	ILMN_60309	CEBPB	NM_024125.4	NM_024125.4		24253	81295401	NM_024125.4	Cebpb	NP_077039.3	ILMN_1371344	0000540736	S	1510	ACCGGGTTTCGGGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGT	3	+	158827530-158827579	3q42	Rattus norvegicus CCAAT/enhancer binding protein (C/EBP), beta (Cebpb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45408] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45408] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription by binding an enhancer region of DNA [goid 3705] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	TCF5; LAP; Il6dbp; NF-IL6	TCF5; LAP; Il6dbp; NF-IL6
Rattus norvegicus	RefSeq	GI_62656228-S	ILMN_55294	LOC497924	XM_573111.1	XM_573111.1		497924	62656228	XM_573111.1	LOC497924	XP_573111.1	ILMN_1362395	0002100538	S	680	TGTCCTCACAGAGCGCAAGCTTCGGCAAATGGAGACCGCTGGCCTTCTCT					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC497924), mRNA.					
Rattus norvegicus	RefSeq	GI_62651582-S	ILMN_48714	LOC500754	XM_580119.1	XM_580119.1		500754	62651582	XM_580119.1	LOC500754	XP_580119.1	ILMN_1370415	0002360162	S	659	GCACTGTAGGGCTGTCTTTCTTGTTAGTGTTCGCTGGGTTTCTTGGCACA					PREDICTED: Rattus norvegicus LOC500754 (LOC500754), mRNA.					
Rattus norvegicus	RefSeq	GI_62639031-S	ILMN_56734	TRIM28	XM_344861.3	XM_344861.3		116698	109458189	XM_344861.3	Trim28	XP_344862.3	ILMN_1361680	0002190068	S	3011	CCACTGAACCTTCCCAGTGCTGGCCTAAGTTCTCAGGAGCTGTCTGGTCC	1	-	72892593-72892642	1q21	PREDICTED: Rattus norvegicus tripartite motif protein 28 (Trim28), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641845-S	ILMN_286466	RGD1561140_PREDICTED	XM_001073386.1	XM_001073386.1		499313	109463485	XM_001073386.1	RGD1561140_predicted	XP_001073386.1	ILMN_1352858	0005690497	S	1502	CCAAACGCAGCAAACCAGACCCAGAGGCTAGCACCATTTTAGGGGTGCAG				1q43	PREDICTED: Rattus norvegicus similar to Zbtb3 protein (predicted) (RGD1561140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662443-S	ILMN_276414	LOC684597	XM_001071187.1	XM_001071187.1		684597	109504007	XM_001071187.1	LOC684597	XP_001071187.1	ILMN_1362438	0003780041	S	1158	CTGTGGTACTTTGAGGATGGGCAGGAGGGCGGGACCTGGCTTGGGGCTGT					PREDICTED: Rattus norvegicus similar to alternative testis transcripts open reading frame A CG4241-PA, isoform A (LOC684597), mRNA.					
Rattus norvegicus	Unigene	Rn.9546	ILMN_160841	RN.9546	Rn.9546		Rn.9546		14934656	BI283173			ILMN_1530161	0002320398	S	384	AAAATACTTTCTGTAAGAAGGAACATATCCTAAGTAACACATTCCATGTA					UI-R-CU0s-cca-h-09-0-UI.s1 UI-R-CU0s Rattus norvegicus cDNA clone UI-R-CU0s-cca-h-09-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_47576890-S	ILMN_262503	OLR227	NM_001000203.1	NM_001000203.1		293370	47576890	NM_001000203.1	Olr227	NP_001000203.1	ILMN_1352297	0002060400	S	254	CTCTGATTGCCCAAGACACAAGTATCTCCTTCCTAGGCTGTGCCACTCAG	1	+	164294531-164294580	1q33	Rattus norvegicus olfactory receptor 227 (Olr227), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr227; ratchr1-164389755-164390708_ORF	Olr227; ratchr1-164389755-164390708_ORF
Rattus norvegicus	RefSeq	GI_62655110-S	ILMN_66427	ALS2CR4_PREDICTED	XM_237179.3	XM_237179.3		316412	62655110	XM_237179.3	Als2cr4_predicted	XP_237179.3	ILMN_1369546	0006180048	S	1344	CTCTGGCTTCTGGGGGGAAATGGAAACTGCCTGACAAGGAACCACAGCAG				9q31	PREDICTED: Rattus norvegicus amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 (predicted) (Als2cr4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47606354-S	ILMN_287640	OLR75	NM_001001281.1	NM_001001281.1		365327	47606354	NM_001001281.1	Olr75	NP_001001281.1	ILMN_1372086	0006900500	S	695	ACTCTTTCCTCAATATTGCCTCCTCGGAAGGACGGCACAAAGCCTTCAGT	1	+	160834492-160834541	1q32	Rattus norvegicus olfactory receptor 75 (Olr75), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr75	Olr75
Rattus norvegicus	RefSeq	GI_47576910-S	ILMN_281680	OLR235	NM_001000209.1	NM_001000209.1		293381	47576910	NM_001000209.1	Olr235	NP_001000209.1	ILMN_1369011	0006550706	S	859	CCATTGATCTACAGTCTGAGGAATAAGGAGGTGAAAGAGGCCATGAGGAA	1	+	165240591-165240640	1q33	Rattus norvegicus olfactory receptor 235 (Olr235), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr235	Olr235
Rattus norvegicus	RefSeq	GI_11559975-S	ILMN_294425	EXOC5	NM_022204.1	NM_022204.1		60627	11559975	NM_022204.1	Exoc5	NP_071540.1	ILMN_1353046	0000730440	S	1778	CCATGGATGGGAAGAATGTGGACACGGTTCTGATGGAGCTCGGAGTACGT	15	-	25009903-25009952	15p14	Rattus norvegicus exocyst complex component 5 (Exoc5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere [goid 48278] [evidence IEA]		Sec10l1	Sec10l1
Rattus norvegicus	RefSeq	GI_62079100-S	ILMN_292938	RGD1306991	NM_001014183.1	NM_001014183.1		362220	62079100	NM_001014183.1	RGD1306991	NP_001014205.1	ILMN_1349316	0001690129	S	1607	AGCAAGACCCCTGAAAGTGACCCATGCTTCTGGCTGGCACTCTGCATGTC	3	+	124140346-124140395	3q36	Rattus norvegicus similar to Protein C20orf103 precursor (RGD1306991), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62650206-S	ILMN_69336	LOC503003	XM_578515.1	XM_578515.1		503003	62650206	XM_578515.1	LOC503003	XP_578515.1	ILMN_1353319	0003120332	S	996	TTCCACTGGTTCTGCTGTGAGGAAGGTGTCCTGGCTTGGGGTCGGTACTG					PREDICTED: Rattus norvegicus similar to Amiloride-sensitive sodium channel delta-subunit (Epithelial Na+ channel delta subunit) (Delta ENaC) (Nonvoltage-gated sodium channel 1 delta subunit) (SCNED) (Delta NaCH) (LOC503003), mRNA.					
Rattus norvegicus	RefSeq	GI_62641362-S	ILMN_283569	ERAF_PREDICTED	XM_001080419.1	XM_001080419.1		293522	109462953	XM_001080419.1	Eraf_predicted	XP_001080419.1	ILMN_1374043	0001090463	S	445	GGCTCAGGGCACCCATCATGCCTTAGAACCCCAAACTCTTGGCTCTGTGT				1q36	PREDICTED: Rattus norvegicus erythroid associated factor (predicted) (Eraf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57977274-S	ILMN_263666	SERBP1	NM_145086.1	NM_145086.1		246303	57977274	NM_145086.1	Serbp1	NP_659554.1	ILMN_1361854	0005080672	S	1136	TGGTGGACGTGGGCGTGGTGGTCGTCCTAATCGTGGCAGCAGGACTGATA	4	+	96918880-96918929	4q31	Rattus norvegicus Serpine1 mRNA binding protein 1 (Serbp1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of anti-apoptosis [goid 45767] [evidence IDA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with the 3' untranslated region of an mRNA molecule [goid 3730] [evidence ISS]	Rda288; Pai-Rbp1; Pairbp1; MGC94773	Rda288; Pai-Rbp1; Pairbp1; MGC94773
Rattus norvegicus	RefSeq	GI_62645586-S	ILMN_66023	RGD1566202_PREDICTED	XM_575209.2	XM_575209.2		499867	109468659	XM_575209.2	RGD1566202_predicted	XP_575209.2	ILMN_1350156	0003870725	S	261	TCAGGGCACTGTGGGTCTCACCCTGGTCCACATCACTGAGAAATCAGAAG	3	+	105281956-105282005	3q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810007E14 (predicted) (RGD1566202_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658713-A	ILMN_266663	CUTL1	XM_001070482.1	XM_001070482.1		116639	109497076	XM_001070482.1	Cutl1	XP_001070482.1	ILMN_1376466	0001050408	S	4938	CTGCGGGCCACAGGGCAAAATCGCCATAGGCCAAGGTGCATATAGAAAAC				12q12	PREDICTED: Rattus norvegicus cut-like 1 (Drosophila) (Cutl1), mRNA.					
Rattus norvegicus	RefSeq	GI_62658713-I	ILMN_266663	CUTL1	XM_001070482.1	XM_001070482.1		116639	109497076	XM_001070482.1	Cutl1	XP_001070482.1	ILMN_1375529	0001090133	S	6112	GAACGCTCTATCCCCATCCCTGTAGAGCTGGCCCAAACTCACCAAAATGG				12q12	PREDICTED: Rattus norvegicus cut-like 1 (Drosophila) (Cutl1), mRNA.					
Rattus norvegicus	RefSeq	GI_20302118-S	ILMN_269079	CALY	NM_138915.1	NM_138915.1		192349	20302118	NM_138915.1	Caly	NP_620270.1	ILMN_1358176	0004670047	S	745	CGGCAGAGGGCAACGAGCCGTCAGGGAAGCCTTTGGACATGAGAGAGAAA	1	-	199869729-199869778	1q41	Rattus norvegicus calcyon neuron-specific vesicular protein (Caly), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence ISS]	The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands [goid 7212] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of endocytosis [goid 45807] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of endocytosis [goid 45807] [evidence ISS]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence ISS]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence ISS]	Interacting selectively with a clathrin light chain [goid 32051] [evidence ISS]; Interacting selectively with a dopamine receptor [goid 50780] [evidence TAS]; Interacting selectively with a dopamine receptor [goid 50780] [evidence IEA]	Calcyon	Calcyon
Rattus norvegicus	RefSeq	GI_41529832-S	ILMN_275705	GNB2	NM_031037.2	NM_031037.2		81667	41529832	NM_031037.2	Gnb2	NP_112299.1	ILMN_1357092	0006520471	S	1429	AAAAGTCGGGGATGGAATGGGGGAAGAGGAAGGGCAGGAAAGCCCTCACC	12	-	19597457-19597506	12q12	Rattus norvegicus guanine nucleotide binding protein (G protein), beta polypeptide 2 (Gnb2), mRNA.		A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	 [goid 5246] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6981555-S	ILMN_298347	SLC7A1	NM_013111.1	NM_013111.1		25648	6981555	NM_013111.1	Slc7a1	NP_037243.1	ILMN_1351408	0002570341	S	5955	CTGCTTGTTGTGCCTGCAGCTTCGATGGGTTAAGGTCACAGAGGGTCATG	12	+	7253384-7253433	12p11	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 (Slc7a1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of basic amino acids, amino acids with a pH above 7, into, out of, within or between cells [goid 15802] [evidence TAS]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IEA]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence IMP]; The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of, within or between cells [goid 15809] [evidence ISS]; Any process that modulates the frequency, rate or extent of the TOR signaling pathway [goid 32006] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence IEA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence IDA]; Catalysis of the stereospecific transfer of arginine, 2-amino-5-guanidinopentanoic acid, across a biological membrane [goid 15181] [evidence ISS]; Catalysis of the transfer of a positively charged amino acid from one side of the membrane to the other [goid 15326] [evidence TAS]	Atrc1; Cat-1; CAT1	Atrc1; Cat-1; CAT1
Rattus norvegicus	RefSeq	GI_62638938-S	ILMN_51516	RGD1564801_PREDICTED	XM_574368.2	XM_574368.2		499084	109458210	XM_574368.2	RGD1564801_predicted	XP_574368.1	ILMN_1356070	0005220717	S	2064	CGCCTTTAACCTCCAAGTAGATCTTGCAGAACCACCTCCATCCCTCGGAC	1	-	73579167-73579216	1q21	PREDICTED: Rattus norvegicus similar to hepatic multiple inositol polyphosphate phosphatase (predicted) (RGD1564801_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651803-S	ILMN_60531	RGD1309019_PREDICTED	XM_234839.4	XM_234839.4		314596	109480297	XM_234839.4	RGD1309019_predicted	XP_234839.4	ILMN_1362413	0006400086	S	3346	AGGGGACAGAGTGGGAGGTGTCAATCACTCTGGTAACTGTGAGGTTGCCC	7	-	12954233-12954282	7q11	PREDICTED: Rattus norvegicus similar to Ras GTPase-activating protein nGAP (RAS protein activator like 1) (predicted) (RGD1309019_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641205-S	ILMN_268259	RGD1559600_PREDICTED	XM_001079027.1	XM_001079027.1		499256	109462769	XM_001079027.1	RGD1559600_predicted	XP_001079027.1	ILMN_1349816	0000460576	S	344	GAAGGACACACCCACCCTGCATTCTCCACACAGAAAGACACAGAGGAGGC				1q35	PREDICTED: Rattus norvegicus RGD1559600 (predicted) (RGD1559600_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640929-S	ILMN_281630	RGD1562118_PREDICTED	XR_008143.1	XR_008143.1		365310	109462452	XR_008143.1	RGD1562118_predicted		ILMN_1364668	0004200601	S	9	CAGCAACGCACACAGCAGAAAGCCTGCCCCTGACTTCATAGCCACCTTGG				1q32	PREDICTED: Rattus norvegicus similar to peroxiredoxin 2 isoform b (predicted) (RGD1562118_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34874504-S	ILMN_280828	SLC25A30	NM_001013187.1	NM_001013187.1		361074	61557224	NM_001013187.1	Slc25a30	NP_001013205.1	ILMN_2039797	0004830452	S	1196	TAGCACCCACTCGCTGGTGGTTACCATTGAAGTGCCCTTTGACATCCGAG	15	-	56656701-56656750	15q11	Rattus norvegicus solute carrier family 25, member 30 (Slc25a30), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Transport of substances into, out of or within a mitochondrion [goid 6839] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651982-S	ILMN_69340	LOC497819	XM_579469.1	XM_579469.1		497819	62651982	XM_579469.1	LOC497819	XP_579469.1	ILMN_1373439	0000460181	S	6624	TCACTCATCTGCCAACTTGTCTAGCATGGAGACTGCATGACTGTCCGGCA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022925; NM_198323 (LOC497819), mRNA.					
Rattus norvegicus	RefSeq	GI_19173749-S	ILMN_270580	ZDHHC7	NM_133394.1	NM_133394.1		170906	19173749	NM_133394.1	Zdhhc7	NP_596885.1	ILMN_1373719	0000520601	S	2387	CTGCCCTTGTCTGGGCTCCTATGCTACTGAGGTGAACCCGGGGGACCTGA	19	-	50406296-50406345	19q12	Rattus norvegicus zinc finger, DHHC domain containing 7 (Zdhhc7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence ISS]; The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence ISS]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Serz-1; Serz1	Serz-1; Serz1
Rattus norvegicus	RefSeq	GI_62651365-S	ILMN_59993	LOC299411	XM_234654.3	XM_234654.3		299411	62651365	XM_234654.3	LOC299411	XP_234654.1	ILMN_1371911	0004760541	S	274	ACATTAGTAGTAGCAGCGGTACGGTCTATGCAGACGCTGTGAAGGAACGG				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region MOPC 21 precursor (LOC299411), mRNA.					
Rattus norvegicus	RefSeq	GI_62644968-S	ILMN_58021	PBX3_PREDICTED	XM_231158.4	XM_231158.4		311876	109468048	XM_231158.4	Pbx3_predicted	XP_231158.4	ILMN_1357931	0004010056	S	2345	AGCCCAGATCGGCAACATTGGGTCTGACTCCTAACACGGACCATCCCAGC	3	-	13200163-13200212	3p11	PREDICTED: Rattus norvegicus pre B-cell leukemia transcription factor 3 (predicted) (Pbx3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663536-S	ILMN_262732	SERPINB9E_PREDICTED	XM_001066335.1	XM_001066335.1		306890	109505711	XM_001066335.1	Serpinb9e_predicted	XP_001066335.1	ILMN_1368960	0006650601	S	1006	GTTCACGAGTGTGTGGTAGAGGTCAATGAAGAAGGAACTGAGGCTGCTGC				17p12	PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B, member 9e (predicted) (Serpinb9e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138611-S	ILMN_283625	GRB7	NM_053403.2	NM_053403.2		84427	52138611	NM_053403.2	Grb7	NP_445855.1	ILMN_1354912	0006130594	S	2271	GGTAGAGCTCCTGAGGCAGTGAAGGGCATTATGAGAGGAGTAGGGGCAGC	10	+	87261470-87261519	10q31	Rattus norvegicus growth factor receptor bound protein 7 (Grb7), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93307	MGC93307
Rattus norvegicus	RefSeq	GI_7549768-S	ILMN_285322	IL6	NM_012589.1	NM_012589.1		24498	7549768	NM_012589.1	Il6	NP_036721.1	ILMN_1355154	0001050164	S	589	GGAGAAGTTAGAGTCACAGAAGGAGTGGCTAAGGACCAAGACCATCCAAC	4	-	457206-457255	4q11	Rattus norvegicus interleukin 6 (Il6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]	The process of apoptosis in neutrophils [goid 1781] [evidence IEA]; The process of apoptosis in neutrophils [goid 1781] [evidence ISS]; The process of apoptosis in neutrophils [goid 1781] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence ISS]; Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism [goid 42832] [evidence IEA]; Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism [goid 42832] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45079] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45079] [evidence ISS]; Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep [goid 45188] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of T-helper 2 cell differentiation [goid 45630] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of T-helper 2 cell differentiation [goid 45630] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IDA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-6 receptor [goid 5138] [evidence IDA]; Interacting selectively with the interleukin-6 receptor [goid 5138] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	ILg6; Ifnb2	ILg6; Ifnb2
Rattus norvegicus	RefSeq	GI_62664050-S	ILMN_53166	LOC498823	XM_574104.1	XM_574104.1		498823	62664050	XM_574104.1	LOC498823	XP_574104.1	ILMN_1362284	0005290075	S	1074	GTTTCTCGCACTGCCCTGTAACTTGGCCCTCGGGGACGTGGATAGTCACA				18p13	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 29 (LOC498823), mRNA.					
Rattus norvegicus	RefSeq	GI_62649282-S	ILMN_292771	ALG6	NM_001033709.1	NM_001033709.1		362547	76096357	NM_001033709.1	Alg6	NP_001028881.1	ILMN_1362432	0001190010	S	1459	GCCGTCTCTGTGAGGAGGCACCTTCCGGGCTTCACGTTTCTTCCCAGAAT	5	+	120452341-120452390	5q33	Rattus norvegicus asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) (Alg6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan [goid 6487] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a glucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 46527] [evidence ISS]	MGC124652	MGC124652
Rattus norvegicus	Unigene	Rn.6387	ILMN_160891	LOC500488	Rn.6387		Rn.6387		62649176	XM_580072	LOC500488		ILMN_1530436	0003870039	S	1350	GAGTATTTTCAGATATATGCCATTTTATACTTTATGTAGAGTGTGCTATG					PREDICTED: Rattus norvegicus LOC500488 (LOC500488),					
Rattus norvegicus	RefSeq	GI_62666145-S	ILMN_278885	MGC112844	XM_001061443.1	XM_001061443.1		361857	109510190	XM_001061443.1	MGC112844	XP_001061443.1	ILMN_1366602	0003140685	S	1256	CCTAGACCCCCTAGCAACCCCTTAGCCCGAGGAACTCTGAAAACCAGCAA				20q12	PREDICTED: Rattus norvegicus chromosome 6 open reading frame 4 (MGC112844), mRNA.					
Rattus norvegicus	RefSeq	GI_62638682-S	ILMN_61676	CHD1_PREDICTED	XM_238731.4	XM_238731.4		308215	109457908	XM_238731.4	Chd1_predicted	XP_238731.4	ILMN_1351901	0006420164	S	3068	TGCTCTCTACCCGAGCTGGGGGTTTAGGCATTAACTTAGCCTCTGCTGAC	1	+	54631019-54631068	1q12	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 1 (predicted) (Chd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_23618878-S	ILMN_279904	GZMF	NM_153466.1	NM_153466.1		266704	23618878	NM_153466.1	Gzmf	NP_703196.1	ILMN_1353360	0007000593	S	442	TGCTGGCTGGGGCCAAATGTCCGTCGATGTCACTAAAAGAACTTCCCGCC	15	-	34696996-34697045	15p12	Rattus norvegicus granzyme F (Gzmf), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Rnkp7	Rnkp7
Rattus norvegicus	RefSeq	GI_62079104-S	ILMN_271967	SFRS6	NM_001014185.1	NM_001014185.1		362264	62079104	NM_001014185.1	Sfrs6	NP_001014207.1	ILMN_1374693	0002470301	S	1614	AGGTCACTCCTAAGGCCCTTTAAGTGTTGATACCTGCCATTGGTGGAGAC	3	+	153798907-153798956	3q42	Rattus norvegicus splicing factor, arginine/serine-rich 6 (Sfrs6), mRNA.		The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665026-S	ILMN_290774	NANOS3_PREDICTED	XM_001072052.1	XM_001072052.1		288909	109508641	XM_001072052.1	Nanos3_predicted	XP_001072052.1	ILMN_1349985	0000460609	S	380	CCACTCACCGGCCAGGGCTATACTTCTGTCTACTGCTACACCACCCGGAA				19q11	PREDICTED: Rattus norvegicus nanos homolog 3 (Drosophila) (predicted) (Nanos3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981693-S	ILMN_265314	SCGB1A1	NM_013051.1	NM_013051.1		25575	6981693	NM_013051.1	Scgb1a1	NP_037183.1	ILMN_1351769	0005390487	S	222	GCAAAATGCAGGAACCCAGCTGAAGAGGCTGGTGGATACCCTCCCACAGG	1	-	211759700-211759749	1q43	Rattus norvegicus secretoglobin, family 1A, member 1 (uteroglobin) (Scgb1a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32689] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-13 production [goid 32696] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-4 production [goid 32713] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-5 production [goid 32714] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs [goid 43488] [evidence ISS]; Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents [goid 50727] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Stops, prevents or reduces the activity of the enzyme phospholipase A2 [goid 19834] [evidence IEA]	CC10; PCBB; CCSP; Ugb	CC10; PCBB; CCSP; Ugb
Rattus norvegicus	RefSeq	GI_34098961-S	ILMN_297126	PFKFB1	NM_012621.3	NM_012621.3		24638	34098961	NM_012621.3	Pfkfb1	NP_036753.3	ILMN_1364575	0006650131	S	1707	CTATGGCCTGAGAGTGCCCTACCTCCAGTGAAGAAGTCCGTAGCAGCTCC	X	+	39885921-39885970	Xq21	Rattus norvegicus 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 (Pfkfb1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A homodimeric, bifunctional enzyme complex which catalyzes the synthesis and degradation of fructose 2,6-bisphosphate, and is required for both glycolysis and gluconeogenesis [goid 43540] [evidence ISS]; A homodimeric, bifunctional enzyme complex which catalyzes the synthesis and degradation of fructose 2,6-bisphosphate, and is required for both glycolysis and gluconeogenesis [goid 43540] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 7592845] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 6281762] [evidence EXP]; A homodimeric, bifunctional enzyme complex which catalyzes the synthesis and degradation of fructose 2,6-bisphosphate, and is required for both glycolysis and gluconeogenesis [goid 43540] [evidence ISS]	The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence TAS]; The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence ISS]; The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence IEA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase [goid 6003] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence ISS]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence ISS]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate [goid 3873] [evidence IEA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [pmid 8634242] [evidence IPI]	PFRX; Pfkfb01	PFRX; Pfkfb01
Rattus norvegicus	RefSeq	GI_34873016-S	ILMN_66871	LOC362677	XM_347072.1	XM_347072.1		362677	34873016	XM_347072.1	LOC362677	XP_347073.1	ILMN_1374909	0002060471	S	545	TGGAGGCCGGAGAGTTCGCTACAAGACGGCGAAGAGCACTTGTTGCTGTC					PREDICTED: Rattus norvegicus hypothetical LOC362677 (LOC362677), mRNA.					
Rattus norvegicus	RefSeq	GI_62718390-S	ILMN_57209	LOC501387	XM_576800.1	XM_576800.1		501387	62718390	XM_576800.1	LOC501387	XP_576800.1	ILMN_1354483	0004540671	S	773	ACCACACCAGACTTTTTGCCAGAAACTATGAAGGCCAGAAGATCCTGGAG					PREDICTED: Rattus norvegicus similar to LRRGT00173 (LOC501387), mRNA.					
Rattus norvegicus	RefSeq	GI_42476050-S	ILMN_290411	CFL1	NM_017147.2	NM_017147.2		29271	42476050	NM_017147.2	Cfl1	NP_058843.1	ILMN_1362054	0000110600	S	1024	CCCTTGATCTTGGCCACTCATGGAAGCAGGACCAGTAAGGGACCTTCAAT	1	+	208137327-208137376	1q43	Rattus norvegicus cofilin 1, non-muscle (Cfl1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence ISS]	A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components [goid 910] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The process by which the edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove [goid 1842] [evidence ISS]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IMP]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The specification and formation of anisotropic intracellular organization or cell growth patterns [goid 30010] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of actin depolymerization [goid 30836] [evidence ISS]; Any process that reduces cell size [goid 45792] [evidence IDA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IMP]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62660195-S	ILMN_53500	LOC289494	XM_223265.3	XM_223265.3		289494	62660195	XM_223265.3	LOC289494	XP_223265.3	ILMN_1364729	0003990609	S	758	GAGCCACAATACCCAGGGAGCCCAAATTCTGGCGGCTCATCCCTACTTGA					PREDICTED: Rattus norvegicus similar to mKIAA0615 protein (LOC289494), mRNA.					
Rattus norvegicus	RefSeq	GI_40018599-S	ILMN_280690	RGD735175	NM_199112.1	NM_199112.1		316530	40018599	NM_199112.1	RGD735175	NP_954543.1	ILMN_1363363	0004760044	S	1941	CAGGAAAACCAAGACGAGAGATGCTGAGGGACAGAAGGCTCCCCAAGGCG	9	-	74419951-74420000	9q33	Rattus norvegicus hypothetical protein MGC:72616 (RGD735175), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC72616	MGC72616
Rattus norvegicus	RefSeq	GI_60499028-S	ILMN_266792	SET	NM_001012504.1	NM_001012504.1		307947	60499028	NM_001012504.1	Set	NP_001012522.1	ILMN_1350181	0002760736	S	540	ATGCTCAAGTCAAACGCAGAATAAGGCCAGCAGGAAGAGGCAGCACGAAG	19	+	55797599-55797648	19q12	Rattus norvegicus SET translocation (Set), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA [goid 6334] [evidence IEA]		Ab1-115	Ab1-115
Rattus norvegicus	RefSeq	GI_62644579-A	ILMN_287274	CRYZ	NM_001012183.1	NM_001012183.1		362061	58865937	NM_001012183.1	Cryz	NP_001012183.1	ILMN_1376548	0000870195	S	1600	TCTCAGTCTGTAAGCCCTGGGGAAGGGCAAAAATGAGCAACACCTACGGG	2	+	252460736-252460785	2q45	Rattus norvegicus crystallin, zeta (Cryz), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: NADPH + H+ + quinone = NADP+ + semiquinone [goid 3960] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527083-S	ILMN_291521	HAT1	NM_001009657.1	NM_001009657.1		296501	57527083	NM_001009657.1	Hat1	NP_001009657.1	ILMN_1357840	0001850372	S	1047	CTGCTGGTGACTGACATGAGTGACGCGGAGCAGTGCAGAAGCTACAGACT	3	+	53741226-53741275	3q21	Rattus norvegicus histone aminotransferase 1 (Hat1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC105743	MGC105743
Rattus norvegicus	RefSeq	GI_62638363-S	ILMN_68607	LOC309557	XM_220117.3	XM_220117.3		309557	62638363	XM_220117.3	LOC309557	XP_220117.3	ILMN_1374454	0003290746	S	3619	TAGTTTGAGGACTCGCAGCTTTGTGGATGCTGGGGAGACCAGGTTGGGGG				1p12	PREDICTED: Rattus norvegicus similar to protein 4.1G (LOC309557), mRNA.					
Rattus norvegicus	RefSeq	GI_62649415	ILMN_281209	RGD1561943_PREDICTED	XM_001063106.1	XM_001063106.1		298359	109476906	XM_001063106.1	RGD1561943_predicted	XP_001063106.1	ILMN_1650967	0005340168	S	3210	CAGATTGGGGAAAACTAAACAGAGCTAAGGGAACAAAAGGACTGTGGGAG					PREDICTED: Rattus norvegicus similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) (predicted), transcript variant 6 (RGD1561943_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575926-S	ILMN_291195	OLR1479	NM_001000721.1	NM_001000721.1		404973	47575926	NM_001000721.1	Olr1479	NP_001000721.1	ILMN_1367679	0003170270	S	479	CCCTACTCGTGGCTAGGTTGTCATTCTGTAAGGACAACGTGATCCCTCAC	10	-	60558885-60558934	10q24	Rattus norvegicus olfactory receptor 1479 (Olr1479), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1479	Olr1479
Rattus norvegicus	RefSeq	GI_62645002-S	ILMN_59791	CEP1_PREDICTED	XM_231168.3	XM_231168.3		311886	62645002	XM_231168.3	Cep1_predicted	XP_231168.3	ILMN_1349088	0002190441	S	7487	CGTGAAGAAGCTGAGAGTTCAGGAGCGTTTCTTCCGTGTAAACCCCACAT				3p11	PREDICTED: Rattus norvegicus centrosomal protein 1 (predicted) (Cep1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649251-S	ILMN_65421	LOC500504	XM_580077.1	XM_580077.1		500504	62649251	XM_580077.1	LOC500504	XP_580077.1	ILMN_1372932	0006130537	S	1216	GGCAGGGTCGGGCAAGGTGCCAACAAGTGGGTTTTGTCTATCCCTAAATG					PREDICTED: Rattus norvegicus LOC500504 (LOC500504), mRNA.					
Rattus norvegicus	RefSeq	GI_62642361-S	ILMN_60690	LOC499358	XM_574671.1	XM_574671.1		499358	62642361	XM_574671.1	LOC499358	XP_574671.1	ILMN_1355627	0001690397	S	1253	CAGCGCTTTGTATTCCCCTGTCACCTCATCCTTGACTGCCAAAGGTTTCG				1q54	PREDICTED: Rattus norvegicus similar to stearoyl-CoA desaturase-4 (LOC499358), mRNA.					
Rattus norvegicus	RefSeq	GI_62639210-S	ILMN_280840	BLVRB_PREDICTED	XM_001072142.1	XM_001072142.1		292737	109461492	XM_001072142.1	Blvrb_predicted	XP_001072142.1	ILMN_1374895	0002850576	S	775	GCTGGGAGGGTCCCATCCTGAGAAATGGCACACATGGAGGGATCAATACA				1q21	PREDICTED: Rattus norvegicus biliverdin reductase B (flavin reductase (NADPH)) (predicted) (Blvrb_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6980997-S	ILMN_298255	GUCY1B2	NM_012770.1	NM_012770.1		25206	6980997	NM_012770.1	Gucy1b2	NP_036902.1	ILMN_1353658	0004780603	S	2074	GGAGCCCAGTGGCAGGGCGAAACTCCACAGATGCAGTCAATAACCAGCCA	15	-	41620584-41620633	15p12	Rattus norvegicus guanylate cyclase 1, soluble, beta 2 (Gucy1b2), mRNA.		The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate [goid 6182] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate [goid 4383] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with ions, charged atoms or groups of atoms [goid 43167] [evidence IDA]	Gucy1b2b; SGC; Gucy1b2a	Gucy1b2b; SGC; Gucy1b2a
Rattus norvegicus	RefSeq	GI_27465620-S	ILMN_286765	DLGAP4	NM_173145.1	NM_173145.1		286930	27465620	NM_173145.1	Dlgap4	NP_775168.1	ILMN_1365698	0002100026	S	3279	GACCCTGAGCCAACTTTCCAATTGACACGTACAAGGGCTCACAAGGTGGC	3	+	147175983-147176024	3q42	Rattus norvegicus discs, large homolog-associated protein 4 (Drosophila) (Dlgap4), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	Dap4; SAPAP4; DAP-4	Dap4; SAPAP4; DAP-4
Rattus norvegicus	RefSeq	GI_56785423-S	ILMN_283136	VOM2R31	NM_173319.1	NM_173319.1		286985	56785423	NM_173319.1	Vom2r31	NP_775441.1	ILMN_1354718	0001570100	S	3403	CAAGCCTGCCTGGATGCTGTGATGCTGCCATGCTCCGACCTTGATGATAA	1	+	70680007-70680056	1q21	Rattus norvegicus vomeronasal 2 receptor, 31 (Vom2r31), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Vom2r31	Vom2r31
Rattus norvegicus	RefSeq	GI_62643334	ILMN_65754	LOC499594	XM_579983.1	XM_579983.1		499594	62643334	XM_579983.1	LOC499594	XP_579983.1	ILMN_1650827	0005420484	S	216	CTTCAGGAAGCTGTCTCTGCTCTTCAGTGCTTGCTGTTTTCAATCGGCAC					PREDICTED: Rattus norvegicus LOC499594 (LOC499594), mRNA.					
Rattus norvegicus	RefSeq	GI_52138596-S	ILMN_285163	TNFRSF11B	NM_012870.2	NM_012870.2		25341	52138596	NM_012870.2	Tnfrsf11b	NP_037002.1	ILMN_1374220	0006760368	S	2145	GTTTATCCAGCTGTCATGCCTGGTTCAGTGTCTACTGACTATGCGCCCTC	7	-	90607015-90607064	7q31	Rattus norvegicus tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) (Tnfrsf11b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus [goid 32026] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx [goid 42489] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx [goid 42489] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx [goid 42489] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides [goid 46685] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Opg; MGC93568	Opg; MGC93568
Rattus norvegicus	RefSeq	GI_8394114-S	ILMN_300616	PTS	NM_017220.1	NM_017220.1		29498	8394114	NM_017220.1	Pts	NP_058916.1	ILMN_1374604	0005900524	S	750	GCTCCGACATGCATCCCAGTCCGCCAAGGCCGTTTAGAGGATCTTTACCT	8	-	53881078-53881127	8q23	Rattus norvegicus 6-pyruvoyl-tetrahydropterin synthase (Pts), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid [goid 6559] [evidence IEA]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence TAS]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence IEA]; The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine [goid 6729] [evidence ISS]	Catalysis of the reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate [goid 3874] [evidence IDA]; Catalysis of the reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate [goid 3874] [evidence IEA]; Catalysis of the reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate [goid 3874] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642663-S	ILMN_55743	RGD1560883_PREDICTED	XM_226616.4	XM_226616.4		294603	109464198	XM_226616.4	RGD1560883_predicted	XP_226616.4	ILMN_1361254	0002320706	S	735	GCAGAAGAGACTGCTGGACACGTTTCTGCAGGACTCCTTTCCTGCCTGCA	2	+	4549524-4549573	2q11	PREDICTED: Rattus norvegicus similar to KIAA0825 protein (predicted) (RGD1560883_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661815-S	ILMN_277390	FBXL3	XM_001076775.1	XM_001076775.1		306129	109502900	XM_001076775.1	Fbxl3	XP_001076775.1	ILMN_1364837	0001580347	S	1163	TTGGGAGATCAGTCAGCAAAGATGTGCTTGGCCGCGTGGGCATGACCTGC				15q22	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 3 (Fbxl3), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62640738-S	ILMN_51998	LOC499186	XM_579927.1	XM_579927.1		499186	62640738	XM_579927.1	LOC499186	XP_579927.1	ILMN_1356295	0001580025	S	265	AAAGGAAGAGGAGGGGGTCATGGCGCTTCGCATCAAAAGTCTCCAGTGGC					PREDICTED: Rattus norvegicus LOC499186 (LOC499186), mRNA.					
Rattus norvegicus	RefSeq	GI_62653269-S	ILMN_67335	LOC500949	XM_576360.1	XM_576360.1		500949	62653269	XM_576360.1	LOC500949	XP_576360.1	ILMN_1369211	0002450092	S	1260	GGGTGACCTATCAGAATCACACCAGACTTCTCGCCAGAAACTATGAAGGC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500949), mRNA.					
Rattus norvegicus	RefSeq	GI_62655627-S	ILMN_273337	ZC3H7A_PREDICTED	XM_001076069.1	XM_001076069.1		360466	109489584	XM_001076069.1	Zc3h7a_predicted	XP_001076069.1	ILMN_1364779	0000670072	S	3294	GGCTGAGGTGTGTTGGGGAAGAGGGTAAGGTTCAGGATGACTCTAAGGGA				10q11	PREDICTED: Rattus norvegicus zinc finger CCCH type containing 7 A (predicted), transcript variant 2 (Zc3h7a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666928-S	ILMN_56615	LOC367835	XM_346319.2	XM_346319.2		367835	62666928	XM_346319.2	LOC367835	XP_346320.2	ILMN_1354381	0002340577	S	296	GACTCAGTCGCTTAAGGCAAAGAAGCAAAGGCTGCTGGCCCGTGCTGAGA				Xq31	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC367835), mRNA.					
Rattus norvegicus	RefSeq	GI_62642932-S	ILMN_68616	RGD1561161_PREDICTED	XM_226771.4	XM_226771.4		294747	109464396	XM_226771.4	RGD1561161_predicted	XP_226771.4	ILMN_1353339	0003870301	S	2217	CCTGTTAGTGACTGTGGTGGCCCTGTGTGTTTGGATGCTGGGCCGAAAGG	2	+	45202889-45202938	2q14	PREDICTED: Rattus norvegicus similar to BC067074 protein (predicted) (RGD1561161_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661818-S	ILMN_62797	SCEL_PREDICTED	XM_341370.2	XM_341370.2		361086	62661818	XM_341370.2	Scel_predicted	XP_341371.2	ILMN_1355076	0002760280	S	1338	TCGAGTCATAGAGGCAGGTGGGAGCGAACGGATATGGCGACCTCAGAGAG				15q22	PREDICTED: Rattus norvegicus sciellin (predicted) (Scel_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302070-S	ILMN_266337	PHF5A	NM_138888.1	NM_138888.1		192246	20302070	NM_138888.1	Phf5a	NP_620243.1	ILMN_1367817	0003120333	S	678	CAGAAGTGTGCTCTTGCAGCAGCTATGATGGGGTTGTCCTGGACCCTCAG	7	-	120216710-120216759	7q34	Rattus norvegicus PHD finger protein 5A (Phf5a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; Ribonucleoprotein complex containing small nuclear RNA U2; a component of the major spliceosome complex [goid 5686] [evidence ISS]; Ribonucleoprotein complex containing small nuclear RNA U2; a component of the major spliceosome complex [goid 5686] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence ISS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]	Ac2-246	Ac2-246
Rattus norvegicus	RefSeq	GI_62650099-S	ILMN_300981	RGD1560231_PREDICTED	XR_008891.1	XR_008891.1		366494	109477636	XR_008891.1	RGD1560231_predicted		ILMN_1362001	0002970142	S	361	AACATCGGCATGTACGGCCTGGACTTCTAGGTGATGCTGGGTAGACCAGC				5q36	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L11 (predicted) (RGD1560231_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18034776-S	ILMN_269397	APOA5	NM_080576.1	NM_080576.1		140638	18034776	NM_080576.1	Apoa5	NP_542143.1	ILMN_1359395	0001660215	S	1439	CATGCCTGATGGTCGCTGTTATAGTCGGTCTACAGAGGGGAACTCCTGTC	8	+	49255430-49255479	8q23	Rattus norvegicus apolipoprotein A-V (Apoa5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence ISS]; A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver [goid 34361] [evidence IEA]; A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triacylglycerol and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver [goid 34362] [evidence ISS]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence ISS]; A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process [goid 34364] [evidence IEA]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence ISS]; A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues [goid 42627] [evidence IEA]	The chemical reactions and pathways involving triacylglycerol, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins [goid 6641] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IMP]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence IEA]; The acquisition, loss or modification of a protein or lipid within a triglyceride-rich lipoprotein particle, including the hydrolysis of triglyceride by lipoprotein lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride from a triglyceride-rich lipoprotein particle [goid 34370] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42159] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids [goid 45723] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids [goid 50996] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids [goid 50996] [evidence IEA]; Any process that activates or increases the activity of the enzyme lipoprotein lipase [goid 51006] [evidence ISS]; Any process that activates or increases the activity of the enzyme lipoprotein lipase [goid 51006] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of acylglycerol within an organism or cell [goid 55090] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of acylglycerol within an organism or cell [goid 55090] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with any triester of glycerol [goid 17129] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline [goid 31210] [evidence ISS]; Interacting selectively with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline [goid 31210] [evidence IEA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence ISS]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence IEA]; Increases the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid [goid 60229] [evidence ISS]; Increases the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid [goid 60229] [evidence IEA]	MGC108612	MGC108612
Rattus norvegicus	RefSeq	GI_62646765-S	ILMN_57476	STEAP2_PREDICTED	XM_231400.4	XM_231400.4		312052	109471681	XM_231400.4	Steap2_predicted	XP_231400.3	ILMN_1363192	0004590368	S	1381	ACTCCTCCCGTGCATAGGCCGAAAGCTCAAACGGATTAAAAAGGGCTGGG	4	+	25051981-25052030	4q12	PREDICTED: Rattus norvegicus six transmembrane epithelial antigen of prostate 2 (predicted) (Steap2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661795-S	ILMN_271928	RGD1560069_PREDICTED	XM_001075637.1	XM_001075637.1		364450	109502839	XM_001075637.1	RGD1560069_predicted	XP_001075637.1	ILMN_1349358	0000070022	S	5	GCAAATTCAAGAGACCCAGGAAGGTGGTGCTGGTCCTGGCGGGACAATAC				15q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L27 (predicted) (RGD1560069_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644924-S	ILMN_55919	FIBCD1_PREDICTED	XM_231138.4	XM_231138.4		311861	109468029	XM_231138.4	Fibcd1_predicted	XP_231138.2	ILMN_1352438	0002450332	S	1569	GGCCACTCCGTGAGGACCGCTAGACTGGCACGCTGCCCAGCGCTAGTGTC	3	-	10919877-10919904:10919905-10919926	3p12	PREDICTED: Rattus norvegicus fibrinogen C domain containing 1 (predicted) (Fibcd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19224656-S	ILMN_290890	FGF14	NM_022223.2	NM_022223.2		63851	19224656	NM_022223.2	Fgf14	NP_071559.2	ILMN_1356981	0006450136	S	629	CTTTGCATGATGTTGGTGAAACAGTCCCGAAAGCTGGGGTGACACCAAGC	15	-	109057340-109057389	15q25	Rattus norvegicus fibroblast growth factor 14 (Fgf14), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Fhf4	Fhf4
Rattus norvegicus	Unigene	Rn.16632-S	ILMN_161862	RN.16632	Rn.16632		Rn.16632		40825016	CK480668			ILMN_2039832	0003890403	S	375	CTTTAGGTAGAGGCAGAAGGAAATATGAAAAGAAGAAACATACTACACAG					AGENCOURT_17606612 NIH_MGC_235 Rattus norvegicus cDNA clone IMAGE:7107447 5', mRNA					
Rattus norvegicus	RefSeq	GI_34861606-S	ILMN_62841	LOC361727	XM_342020.1	XM_342020.1		361727	34861606	XM_342020.1	LOC361727	XP_342021.1	ILMN_1362818	0003850138	S	1137	CATGGGACCGAGGAGGGCCTTACAGCCTCTGGATTATTAGTTACAGGTGG				1q43	PREDICTED: Rattus norvegicus similar to thymus atrophy-related protein (predicted) (LOC361727), mRNA.					
Rattus norvegicus	RefSeq	GI_62659764-S	ILMN_68150	LOC305103	XM_223121.3	XM_223121.3		305103	62659764	XM_223121.3	LOC305103	XP_223121.3	ILMN_1373538	0005130193	S	629	GTTCCCCTTGGTTGTCTCAGGTACTGCCTCGATGAAGAGCACCACGATGG					PREDICTED: Rattus norvegicus cell surface glycoprotein gp42 (LOC305103), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62642728-S	ILMN_271059	RGD1561110_PREDICTED	XM_574832.1	XM_574832.1		499507	62642728	XM_574832.1	RGD1561110_predicted	XP_574832.1	ILMN_1359040	0002120603	S	1227	TTCCAGCTGTGTGCGGTAACACATGGGACTTGTGGAACTAAAACAGGAAG	2	-	22686650-22686699	2q12	PREDICTED: Rattus norvegicus similar to hypothetical protein 2BE2121 - Chinese hamster (fragment) (predicted) (RGD1561110_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648530-S	ILMN_51251	LOC500389	XM_575748.1	XM_575748.1		500389	62648530	XM_575748.1	LOC500389	XP_575748.1	ILMN_1367310	0007050687	S	901	CCTGGACTGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCACAGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500389), mRNA.					
Rattus norvegicus	RefSeq	GI_62645487-S	ILMN_61421	LOC362181	XM_342480.2	XM_342480.2		362181	62645487	XM_342480.2	LOC362181	XP_342481.1	ILMN_1369681	0003290184	S	8	GAAAGACTGGTTCAATGGTTCGCTACTCCCTTGACCCAGAAAACCCCACA				3q32	PREDICTED: Rattus norvegicus similar to Ac2-210 (LOC362181), mRNA.					
Rattus norvegicus	RefSeq	GI_62662928-S	ILMN_58246	RGD1559872_PREDICTED	XM_225035.4	XM_225035.4		306622	109503562	XM_225035.4	RGD1559872_predicted	XP_225035.4	ILMN_1351590	0006040041	S	1006	ACCGAGAGACTGACGAGCGCCCTGAAGATGTTCCCCGAGCACTGCATGAT	16	+	80398520-80398569	16q12.5	PREDICTED: Rattus norvegicus RGD1559872 (predicted) (RGD1559872_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658596-S	ILMN_279818	RGD1561105_PREDICTED	XM_001067249.1	XM_001067249.1		498166	109496751	XM_001067249.1	RGD1561105_predicted	XP_001067249.1	ILMN_1351599	0001660092	S	1609	GCTAGGCGTTGCCTGATGGGCGGTGAGGCTTTAGACCCCAAATACATCAC				12q11	PREDICTED: Rattus norvegicus similar to galactose-3-O-sulfotransferase 4 (predicted) (RGD1561105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654405-S	ILMN_55290	SUSD5_PREDICTED	XM_236674.4	XM_236674.4		301039	109484048	XM_236674.4	Susd5_predicted	XP_236674.4	ILMN_1349723	0000670176	S	1749	TCCAGCGGAGGTCACAGCTCCCGAGGTTCAGGATAACTTCCCATACCTGC	8	+	118739036-118739085	8q32	PREDICTED: Rattus norvegicus sushi domain containing 5 (predicted) (Susd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660085-S	ILMN_68563	LOC501884	XM_577303.1	XM_577303.1		501884	62660085	XM_577303.1	LOC501884	XP_577303.1	ILMN_1371207	0003520463	S	843	GAGTTACATGGAGAAGACAGGTGCCTGCTGCAGGTGGAGTTAGAAGCTTG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC501884), mRNA.					
Rattus norvegicus	RefSeq	GI_62657632-S	ILMN_59914	RGD1560373_PREDICTED	XM_221655.4	XM_221655.4		304091	109492928	XM_221655.4	RGD1560373_predicted	XP_221655.4	ILMN_1352759	0006980014	S	1456	CGAATGCCAGTAGACCACCCTCATCTCAAAAGCAACTGGCCCCATGCTGG	11	+	31396858-31396907	11q11	PREDICTED: Rattus norvegicus similar to class II cytokine receptor 4 (predicted) (RGD1560373_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653737-S	ILMN_264136	RGD1560104_PREDICTED	XM_001071808.1	XM_001071808.1		501005	109484750	XM_001071808.1	RGD1560104_predicted	XP_001071808.1	ILMN_1361654	0000380619	S	846	AAGTGCCATATCATGTGACCGCTTCCCCTGGGTTTGCCTCTAGGATGGCC				8q24	PREDICTED: Rattus norvegicus similar to Complexin III (predicted) (RGD1560104_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27669099-S	ILMN_292887	NDUFB11_PREDICTED	XM_001054860.1	XM_001054860.1		299310	109511447	XM_001054860.1	Ndufb11_predicted	XP_001054860.1	ILMN_1361253	0004050100	S	401	TAATCGCCCCGTCCGGTGTGGAGAGAAAGCGGCAAAGAGAACCGACCATG				Xq12	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11 (predicted) (Ndufb11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648977	ILMN_50796	LOC500456	XM_575820.1	XM_575820.1		500456	62648977	XM_575820.1	LOC500456	XP_575820.1	ILMN_1651115	0001500088	S	1619	GTGAGGACTTGAATTCTCCCTCACCGCTCGCTGCTTCTATTAAGGCCAGC					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC500456), mRNA.					
Rattus norvegicus	RefSeq	GI_62649914-S	ILMN_54007	PLA2G2E_PREDICTED	XM_238421.4	XM_238421.4		298581	109475712	XM_238421.4	Pla2g2e_predicted	XP_238421.4	ILMN_1348935	0002060088	S	718	TCTCCCGGATCAGCTAAAGGAACCGCGGGACTCAACAGCGCTCACAAGAC	5	+	157704879-157704928	5q36	PREDICTED: Rattus norvegicus phospholipase A2, group IIE (predicted) (Pla2g2e_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11527395-S	ILMN_296118	LYPD3	NM_021759.1	NM_021759.1		60378	11527395	NM_021759.1	Lypd3	NP_068527.1	ILMN_1368022	0003850497	S	1495	GCTTGCCCGGCATCTGTGCAGGAATCTGGTCGCCTGTCTTCCTTAGGAGA	1	+	79922260-79922309	1q21	Rattus norvegicus Ly6/Plaur domain containing 3 (Lypd3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Any process involved in the controlled movement of a cell [goid 6928] [evidence IDA]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence IDA]	Interacting selectively with laminins, glycoproteins that are major constituents of the basement membrane of cells [goid 43236] [evidence IDA]	C4.4a	C4.4a
Rattus norvegicus	RefSeq	GI_62638736-S	ILMN_64249	LOC308183	XM_217910.3	XM_217910.3		308183	62638736	XM_217910.3	LOC308183	XP_217910.3	ILMN_1349374	0004730050	S	1495	ATCCAACGTATAGACCAACAGCCAGTGAGGTGGTGAAACATGCCTGGTTC				1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC308183), mRNA.					
Rattus norvegicus	RefSeq	GI_19923694-S	ILMN_296758	DIO2	NM_031720.2	NM_031720.2		65162	19923694	NM_031720.2	Dio2	NP_113908.2	ILMN_1356966	0003190609	S	2863	GAGTGGGTGGGGGGATGAGTTTTTGGCTAACGCCATGCTAGTTGTCTGGG	6	-	114306101-114306150	6q31	Rattus norvegicus deiodinase, iodothyronine, type II (Dio2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IDA]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence TAS]; The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42403] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42404] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 42404] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence IDA]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence IDA]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence ISS]; Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2 [goid 4800] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650487-S	ILMN_283778	RGD1305961_PREDICTED	XM_001073211.1	XM_001073211.1		298890	109479157	XM_001073211.1	RGD1305961_predicted	XP_001073211.1	ILMN_1355101	0004590079	S	1580	GTGTCAGCTCAGACACAAGAAACACATGCAACTGTTACCCTGACAGAGAG				6q14	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp566A1524 (predicted) (RGD1305961_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27683190-S	ILMN_161757	LOC316369	XM_237115.1	XM_237115.1			27683190	XM_237115.1	LOC316369		ILMN_2040588	0003310577	S	1057	GCCGTCAAGTCAGTTCCTCTAGGGTTTGCATTGTCTGGCTCCCTAGCCCA										
Rattus norvegicus	RefSeq	GI_47577462-S	ILMN_263805	OLR472	NM_001000301.1	NM_001000301.1		295743	47577462	NM_001000301.1	Olr472	NP_001000301.1	ILMN_1368017	0000670131	S	678	GATTAGCTCTACAGAAGGCAAGCGCAAAGCTTTCTCTACCTGTGGCTCCC	3	+	69205259-69205308	3q24	Rattus norvegicus olfactory receptor 472 (Olr472), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr472; ratchr3-69100954-69101937_ORF	Olr472; ratchr3-69100954-69101937_ORF
Rattus norvegicus	RefSeq	GI_62651380-S	ILMN_60711	LOC366758	XM_345745.2	XM_345745.2		366758	62651380	XM_345745.2	LOC366758	XP_345746.2	ILMN_1371251	0000580504	S	320	AGCAGAGGGACCTAGTCCTGATTGCCTCAGCCTTCAGTTTTCAAATCCAG				6q33	PREDICTED: Rattus norvegicus similar to gamma-2a immunoglobulin heavy chain (LOC366758), mRNA.					
Rattus norvegicus	RefSeq	GI_62666720-S	ILMN_68756	LOC501542	XM_576943.1	XM_576943.1		501542	62666720	XM_576943.1	LOC501542	XP_576943.1	ILMN_1361899	0006450026	S	462	ATGGAAACAACCCTGGATATAGAAAACCAAAGGAATAGACAAGGAGCCGT					PREDICTED: Rattus norvegicus similar to ORF1 (LOC501542), mRNA.					
Rattus norvegicus	RefSeq	GI_62639651-S	ILMN_270898	RGD1309036_PREDICTED	XM_001080577.1	XM_001080577.1		292874	109461866	XM_001080577.1	RGD1309036_predicted	XP_001080577.1	ILMN_1363760	0001400577	S	641	TACCCACTTGTGCGCCACGACGATCTACTGCTGGGGGACTACCGTCTGCA				1q22	PREDICTED: Rattus norvegicus hypothetical LOC292874 (predicted) (RGD1309036_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652418-S	ILMN_68299	SLC30A8_PREDICTED	XM_235269.3	XM_235269.3		299903	62652418	XM_235269.3	Slc30a8_predicted	XP_235269.3	ILMN_1361100	0006450717	S	1707	TGAAGAGGATCTCGAGGCTTGGGGATTTGACTCTTGTGCCATCCTCAGTG				7q31	PREDICTED: Rattus norvegicus solute carrier family 30 (zinc transporter), member 8 (predicted) (Slc30a8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718163	ILMN_68804	LOC501306	XM_576719.2	XM_576719.2		501306	109513249	XM_576719.2	LOC501306	XP_576719.1	ILMN_1649882	0002630722	S	598	GGACTCAGAAAGTGCAAGAGAGCTGGAATTGGACACACAGCCGTAAGAGA	Un|NW_047874.1	-	485903-485952		PREDICTED: Rattus norvegicus hypothetical LOC501306 (LOC501306), mRNA.					
Rattus norvegicus	RefSeq	GI_62718269-S	ILMN_68804	LOC501306	XM_576719.2	XM_576719.2		501306	109513249	XM_576719.2	LOC501306	XP_576719.1	ILMN_1374469	0006020113	S	711	GCACTTGAGAGACAACTTGGGGGACCGCCTTTCATTATGTGGGCTAGAGG	Un|NW_047874.1	-	485672-485721		PREDICTED: Rattus norvegicus hypothetical LOC501306 (LOC501306), mRNA.					
Rattus norvegicus	RefSeq	GI_62658546-S	ILMN_274635	RGD1566386_PREDICTED	XM_001074662.1	XM_001074662.1		304336	109496684	XM_001074662.1	RGD1566386_predicted	XP_001074662.1	ILMN_1359772	0001780184	S	1774	GCATTTGCCCGGAAGTCGCACCTCACGCAACATCAGAAAACCCACACAGG				12q11	PREDICTED: Rattus norvegicus similar to Hypothetical protein A430033K04 (predicted) (RGD1566386_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650455-S	ILMN_60528	LOC500628	XM_580098.1	XM_580098.1		500628	62650455	XM_580098.1	LOC500628	XP_580098.1	ILMN_1368756	0005570471	S	48	GGGCAGAACTGTGTGAGTGAGAGGGCAGTAGGGCTTCAGAGGGAAAAGAC					PREDICTED: Rattus norvegicus LOC500628 (LOC500628), mRNA.					
Rattus norvegicus	RefSeq	GI_62646523-S	ILMN_301270	YTHDF1	NM_001024756.1	NM_001024756.1		296467	67078503	NM_001024756.1	Ythdf1	NP_001019927.1	ILMN_1359863	0006620592	S	2814	CATGAAAGTGGTGCTCATGCCCGACGCCCTCGCATACTGAATCTGCACGC	3	-	170014495-170014544	3q43	Rattus norvegicus YTH domain family, member 1 (Ythdf1), mRNA.					
Rattus norvegicus	RefSeq	GI_34879287-S	ILMN_52129	DDX6	XM_236192.2	XM_236192.2		315604	34879287	XM_236192.2	Ddx6	XP_236192.2	ILMN_1355553	0002680008	S	986	CTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGT					PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (Ddx6), mRNA.					
Rattus norvegicus	RefSeq	GI_62656111	ILMN_48967	PGBD2_PREDICTED	XM_220453.3	XM_220453.3		287304	62656111	XM_220453.3	Pgbd2_predicted	XP_220453.3	ILMN_1650557	0004480170	S	1454	GCATCGAGCAGAGAGGACTTAGGATGCAGGTTCTGGTGAGCCACAGACAG				10q22	PREDICTED: Rattus norvegicus piggyBac transposable element derived 2 (predicted) (Pgbd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658915-S	ILMN_56047	LOC497685	XM_579547.1	XM_579547.1		497685	62658915	XM_579547.1	LOC497685	XP_579547.1	ILMN_1375145	0004780136	S	1571	AAGAACTCGTAAAGTGGTGTGCAGGCTTCTTCAGCCAGCGCCCGAAAACC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_032416 (LOC497685), mRNA.					
Rattus norvegicus	RefSeq	GI_62640745-S	ILMN_52348	RLBP1_PREDICTED	XM_214973.4	XM_214973.4		293049	109458940	XM_214973.4	Rlbp1_predicted	XP_214973.4	ILMN_1350855	0003440152	S	1003	AGCAGCTCTTCGGTCCCCGGGTTGAGGTTGAGAACACAGCCTTGTGAGGA	1	-	135122907-135122910:135122911-135122956	1q31	PREDICTED: Rattus norvegicus retinaldehyde binding protein 1 (predicted) (Rlbp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758973	ILMN_297119	PIP5K2A	NM_053926.1	NM_053926.1		116723	16758973	NM_053926.1	Pip5k2a	NP_446378.1	ILMN_1650849	0006370717	S	1644	ATCAGAGCTTGTAACAGCCAGACCCCTCTGATTCCGGCTGTGGCAGCATG				17q12.3	Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type II, alpha (Pip5k2a), mRNA.					
Rattus norvegicus	RefSeq	GI_62655228-S	ILMN_50810	RGD1306844	XM_343592.3	XM_343592.3		363252	109486262	XM_343592.3	RGD1306844	XP_343593.2	ILMN_1363598	0006400195	S	2205	CCTGCACTGTACCCTTGCCCAGTTCAACCCTCACGATGCAGAACAGCAGG	9	+	74432175-74432224	9q33	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300010M03 (RGD1306844), mRNA.					
Rattus norvegicus	RefSeq	GI_62641248-S	ILMN_272925	TNRC6_PREDICTED	XM_001079613.1	XM_001079613.1		308971	109462828	XM_001079613.1	Tnrc6_predicted	XP_001079613.1	ILMN_1349380	0004730377	S	5877	TCTCAATCACTGGAATGGTGCTGGGCTGTCGGGAACTAACTGTGGAGACC				1q36	PREDICTED: Rattus norvegicus trinucleotide repeat containing 6 (predicted) (Tnrc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648843-S	ILMN_268302	RGD1559864_PREDICTED	XM_001061613.1	XM_001061613.1		500446	109476305	XM_001061613.1	RGD1559864_predicted	XP_001061613.1	ILMN_1354057	0002060707	S	2279	CCCTCTGTGCTAGGAGATGGAGCTAGCCTGAGAGGACCTTGTGGACACTC				5q22	PREDICTED: Rattus norvegicus similar to mKIAA1045 protein (predicted) (RGD1559864_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650205	ILMN_279800	VWA1	NM_001013938.1	NM_001013938.1		298683	62078604	NM_001013938.1	Vwa1	NP_001013960.1	ILMN_1651168	0000870594	S	941	AGTACGCACACTGCAAGAGGAGGCAGGGCCAGAACGCATCGTCATCTCGC	5	-	172627750-172627783:172627864-172627879	5q36	Rattus norvegicus von Willebrand factor A domain containing 1 (Vwa1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]			RGD1311476	RGD1311476
Rattus norvegicus	RefSeq	GI_27545439-S	ILMN_266889	CAMK2N1	NM_173337.1	NM_173337.1		287005	27545439	NM_173337.1	Camk2n1	NP_775459.1	ILMN_1352131	0000520504	S	355	GCTTGCTACCTACGATGAAATCGACAACCTGTGTCTCAAGTCAGGCCGGG	5	+	157237260-157237309	5q36	Rattus norvegicus calcium/calmodulin-dependent protein kinase II inhibitor 1 (Camk2n1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IC ]	Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence ISS]; Stops, prevents or reduces the activity of a calcium-dependent protein kinase [goid 8427] [evidence IDA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647645-S	ILMN_263296	RGD1562898_PREDICTED	XR_008732.1	XR_008732.1		500215	109473738	XR_008732.1	RGD1562898_predicted		ILMN_1369903	0006110450	S	233	TCCTGCTAACATCAAGTGGGGTGCTGAGTATGTCGTGGAGAATACTGGTG				4q33	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1562898_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647307-S	ILMN_60701	RGD1563940_PREDICTED	XM_575484.2	XM_575484.2		500132	109472080	XM_575484.2	RGD1563940_predicted	XP_575484.1	ILMN_1374765	0005670670	S	1507	GCTGGGTAGTTCGAGGGGTTTTTGCGTTAGCACTGAGGGCAGCACCATCC	4	+	83043693-83043718:83049134-83049157	4q24	PREDICTED: Rattus norvegicus similar to phosphoinositol 4-phosphate adaptor protein-2 (predicted) (RGD1563940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_39930500-S	ILMN_276281	DNAJC2	NM_053776.1	NM_053776.1		116456	39930500	NM_053776.1	Dnajc2	NP_446228.1	ILMN_1369836	0001050341	S	2043	AGCCAGGAAGTGACGCGGGCAGGCGGTCTCGGTCTGTGTGCACTTTTATA	4	+	8746681-8746730	4q11	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 2 (Dnajc2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Progression through G2 phase, one of two 'gap' phases in the mitotic cell cycle; G2 is the interval between the completion of DNA synthesis and the beginning of mitosis [goid 85] [evidence ISS]; Progression through G2 phase, one of two 'gap' phases in the mitotic cell cycle; G2 is the interval between the completion of DNA synthesis and the beginning of mitosis [goid 85] [evidence IEA]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IDA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]	Zrf2; MGC105894; MIDA1	Zrf2; MGC105894; MIDA1
Rattus norvegicus	RefSeq	GI_19424227-S	ILMN_280584	B3GALT4	NM_133553.1	NM_133553.1		171079	19424227	NM_133553.1	B3galt4	NP_598237.1	ILMN_1364490	0003170369	S	1192	AGGAAGCCTGGAAGCTGGTGAGAGGACTGAATGGGAGAAGGACTGAGCCC	20	+	5089075-5089124	20p12	Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 (B3galt4), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]	Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	MGC156596	MGC156596
Rattus norvegicus	RefSeq	GI_62647555-S	ILMN_49266	LOC502814	XM_578313.1	XM_578313.1		502814	62647555	XM_578313.1	LOC502814	XP_578313.1	ILMN_1361103	0001740039	S	444	CAGCTCCTGATCTATGGTGCAACCTCCAGAGGGGACATTGTGTTGACTCA				4q31	PREDICTED: Rattus norvegicus similar to [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gene product (LOC502814), mRNA.					
Rattus norvegicus	RefSeq	GI_62657991-S	ILMN_278345	FYTTD1	XM_001072528.1	XM_001072528.1		360726	109494502	XM_001072528.1	Fyttd1	XP_001072528.1	ILMN_1355027	0001050037	S	1607	AAATGGAGACAACATGAAAGGCATCAGCACACTGAAGGATTGGAAACGGG				11q22	PREDICTED: Rattus norvegicus forty-two-three domain containing 1 (Fyttd1), mRNA.					
Rattus norvegicus	RefSeq	GI_62643928-S	ILMN_274071	ITGA10_PREDICTED	XM_001063132.1	XM_001063132.1		310683	109467233	XM_001063132.1	Itga10_predicted	XP_001063132.1	ILMN_1373558	0000510239	S	3649	GAGTGTCTCCTGACCTGCAGCCTCACTTGACTTTTGAGCCATGGGGATGC				2q34	PREDICTED: Rattus norvegicus integrin, alpha 10 (predicted) (Itga10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659755-S	ILMN_285755	SLAMF9_PREDICTED	XM_001055745.1	XM_001055745.1		289235	109499067	XM_001055745.1	Slamf9_predicted	XP_001055745.1	ILMN_1367846	0006450348	S	853	CTGAGAGGCCAAGGGAGAGGAAGCTCGAGAGAAACCGAATTACACTGAGG				13q24	PREDICTED: Rattus norvegicus SLAM family member 9 (predicted) (Slamf9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662757-S	ILMN_277558	RGD1566335_PREDICTED	XM_001067645.1	XM_001067645.1		306515	109504307	XM_001067645.1	RGD1566335_predicted	XP_001067645.1	ILMN_1369092	0003190592	S	769	TGTATCAGATCCTGGCCCCTGCGGCTGCTTTATAGATCCCTCACTTGGGC				16q12.3	PREDICTED: Rattus norvegicus similar to FKSG89 (predicted) (RGD1566335_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34857516-S	ILMN_288260	OLR760	NM_001001069.1	NM_001001069.1		405957	47577108	NM_001001069.1	Olr760	NP_001001069.1	ILMN_1364071	0002060164	S	463	CATGCTATGAGCCACTTGACAGTCATTGTGGAGCTGCCCTTTTGTGGACC	3	-	97051529-97051578	3q34	Rattus norvegicus olfactory receptor 760 (Olr760), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr760	Olr760
Rattus norvegicus	RefSeq	GI_47577108-S	ILMN_288260	OLR760	NM_001001069.1	NM_001001069.1		405957	47577108	NM_001001069.1	Olr760	NP_001001069.1	ILMN_1367521	0002190373	S	6	AGGAGGCAATCAGACTGTGGTGTCAGAATTTATTTTCTGGGGACTTTCCC	3	-	97051986-97052035	3q34	Rattus norvegicus olfactory receptor 760 (Olr760), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr760	Olr760
Rattus norvegicus	RefSeq	GI_18034786-S	ILMN_277283	AP2B1	NM_080583.1	NM_080583.1		140670	18034786	NM_080583.1	Ap2b1	NP_542150.1	ILMN_1374954	0005690047	S	5306	GGAATGCGTAGTTTCCTGTTCTGTCGGGGTCTGTTGTTGGGGAGGTGGGG	10	+	71487896-71487945	10q26	Rattus norvegicus adaptor-related protein complex 2, beta 1 subunit (Ap2b1), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393540	ILMN_269821	FOXA3	NM_017077.1	NM_017077.1		25100	8393540	NM_017077.1	Foxa3	NP_058773.1	ILMN_1650380	0000070309	S	1274	GACCCATTGGCTACTGTGGTAACTGCATGGACTCTTCGGTGGGCCTAGGG	1	-	78368198-78368247	1q21	Rattus norvegicus forkhead box A3 (Foxa3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence IEA]; A cellular homeostatic process involved in the maintenance of an internal equilibrium of glucose within a cell or between a cell and its external environment [goid 1678] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment [goid 9267] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]	Hnf3g	Hnf3g
Rattus norvegicus	RefSeq	GI_62638786-S	ILMN_66752	ZFP53_PREDICTED	XM_218041.3	XM_218041.3		308236	62638786	XM_218041.3	Zfp53_predicted	XP_218041.3	ILMN_1350520	0005690056	S	2041	TGCAGCATCTGGAACCGCTGCCGGGCTATAGGAGCTGTGGAGCTGAGAAA				1q12	PREDICTED: Rattus norvegicus zinc finger protein 53 (predicted) (Zfp53_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646336-S	ILMN_272011	WFDC5_PREDICTED	XM_001070937.1	XM_001070937.1		296352	109471272	XM_001070937.1	Wfdc5_predicted	XP_001070937.1	ILMN_1370935	0004540576	S	352	GTGACAAAGACTTGGACTGCTCCGGCAAGAAGCGGTGCTGTGTTAGCGCC				3q42	PREDICTED: Rattus norvegicus WAP four-disulfide core domain 5 (predicted) (Wfdc5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649905-S	ILMN_53476	RGD1560959_PREDICTED	XM_233583.4	XM_233583.4		313650	109475706	XM_233583.4	RGD1560959_predicted	XP_233583.3	ILMN_1375157	0002340537	S	1137	TTCGGTACCCCGGGCTCCATTGCGCCGCCTGCTCAACGCCAAGTGCGCTT	5	-	157172463-157172512	5q36	PREDICTED: Rattus norvegicus similar to family with sequence similarity 43, member B (predicted) (RGD1560959_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641059-S	ILMN_263691	BCL2L1	NM_001033671.1	NM_001033671.1		24888	75992931	NM_001033671.1	Bcl2l1	NP_001028843.1	ILMN_1355163	0004010411	S	1421	GGCCCACGCTAGGTGCCCCAGAGCTGTTAATGACTTCAGCTGCCTCACTT	3	-	143129731-143129780	3q41	Rattus norvegicus Bcl2-like 1 (Bcl2l1), nuclear gene encoding mitochondrial protein, transcript variant 4, mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence TAS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 44429] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloheximide stimulus. Cycloheximide (actidione) is an antibiotic produced by some Streptomyces species which interferes with protein synthesis in eukaryotes [goid 46898] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 51881] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Stops, prevents or reduces the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43027] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 18250306] [evidence IPI]	Bcl-xl; Bcl2l; bcl-X; Bclx	Bcl-xl; Bcl2l; bcl-X; Bclx
Rattus norvegicus	RefSeq	GI_62639159-S	ILMN_278414	RGD1563034_PREDICTED	XM_001077044.1	XM_001077044.1		292720	109461463	XM_001077044.1	RGD1563034_predicted	XP_001077044.1	ILMN_1360558	0005550017	S	1077	TCCAGAGGCCACACTGGCTGGGAAGGAGGACAGTGACTCTGAGCTGGAGA				1q21	PREDICTED: Rattus norvegicus similar to ETS domain transcription factor ERF (Ets2 repressor factor) (predicted) (RGD1563034_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.66864	ILMN_271851	CLPX	NM_001007803.1	NM_001007803.1		300786	56119121	NM_001007803.1	Clpx	NP_001007804.1	ILMN_1530376	0005130139	S	1267	TTCAATGGCTTAGACAGAATCATCAGTAGGAGGAAAAATGAAAAGTATCT	8	+	69563377-69563421:69565254-69565258	8q24	Rattus norvegicus ClpX caseinolytic peptidase X homolog (E. coli) (Clpx), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	MGC94617	MGC94617
Rattus norvegicus	RefSeq	GI_56119121-S	ILMN_271851	CLPX	NM_001007803.1	NM_001007803.1		300786	56119121	NM_001007803.1	Clpx	NP_001007804.1	ILMN_2040542	0005290626	S	1314	TCTTGGATTTGGAACACCATCTAACCTGGGGAAGGGCAGAAGGGCTGCAG	8	+	69565256-69565305	8q24	Rattus norvegicus ClpX caseinolytic peptidase X homolog (E. coli) (Clpx), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	MGC94617	MGC94617
Rattus norvegicus	RefSeq	GI_62665494-I	ILMN_51581	ZFP276_PREDICTED	XM_577669.1	XM_577669.1		307924	62665494	XM_577669.1	Zfp276_predicted	XP_577669.1	ILMN_1375609	0006020091	S	23	CTTCCTGTCTCCTGGAATAGCTCGGCAGCGCGGGAGTTCGGGCAGCAGCT				19q12	PREDICTED: Rattus norvegicus zinc finger protein (C2H2 type) 276 (predicted) (Zfp276_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42409522-S	ILMN_270713	SCGN	XM_001070794.1	XM_001070794.1		306942	109505777	XM_001070794.1	Scgn	XP_001070794.1	ILMN_1374799	0000580725	S	714	GAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGCGCTGTGTCTTGGGC				17p11	PREDICTED: Rattus norvegicus secretagogin, EF-hand calcium binding protein (Scgn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_25742798-S	ILMN_291951	TLR4	NM_019178.1	NM_019178.1		29260	25742798	NM_019178.1	Tlr4	NP_062051.1	ILMN_1364385	0001090671	S	2856	CCTCAACGACCTCACAGGGCACAAGGAAGTAGCAATGTGATGAAACCCCA	5	+	83577250-83577299	5q24	Rattus norvegicus toll-like receptor 4 (Tlr4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response [goid 2224] [evidence IDA]; The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2282] [evidence IDA]; The synthesis or release of nitric oxide following a stimulus during an acute inflammatory response, resulting in an increase in its intracellular or extracellular levels [goid 2537] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium [goid 9617] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42116] [evidence ISS]; A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 42116] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42535] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45084] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence TAS]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8 [goid 45416] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8 [goid 45416] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP];  [goid 52033] [evidence IDA]	Interacting selectively with lipopolysaccharide [goid 1530] [evidence IDA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a phosphoinositide 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring [goid 43548] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62644066-S	ILMN_290668	ACP6	NM_001031645.1	NM_001031645.1		295305	72255520	NM_001031645.1	Acp6	NP_001026815.1	ILMN_1354025	0005050129	S	1071	CCAGCACCAAGAATCTAAGGAGTGGTTTGTGCGGCTCTCCTACAACGGGC	2	+	191963505-191963554	2q34	Rattus norvegicus acid phosphatase 6, lysophosphatidic (Acp6), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]		Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum [goid 3993] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116276	MGC116276
Rattus norvegicus	RefSeq	GI_62656809-S	ILMN_69704	TRAF4_PREDICTED	XM_220640.4	XM_220640.4		303285	109488586	XM_220640.4	Traf4_predicted	XP_220640.3	ILMN_1351608	0000130711	S	1643	GGCGAGGTTCCCTGGATGAGAGTTCTCTGGGCTTTGGCTACCCCAAATTC	10	+	64476463-64476512	10q25	PREDICTED: Rattus norvegicus Tnf receptor associated factor 4 (predicted) (Traf4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648222-S	ILMN_58395	LOC362447	XM_342769.2	XM_342769.2		362447	62648222	XM_342769.2	LOC362447	XP_342770.2	ILMN_1353111	0002120520	S	1260	CAGTGTGACTACAAAACCAATGCCGCTGACAAGGAGCTGGCTGCGGTCGC				4q42	PREDICTED: Rattus norvegicus similar to osteoclast inhibitory lectin (LOC362447), mRNA.					
Rattus norvegicus	RefSeq	GI_62078938-S	ILMN_279474	LOC316573	XM_001077059.1	XM_001077059.1		316573	109486298	XM_001077059.1	LOC316573	XP_001077059.1	ILMN_1373102	0005270026	S	1117	CGTGACTCCCATTGCCTACGAGGATTACAGCCCTGATGACAAACCCTTGG	9	-	83716781-83716830	9q34-q35	PREDICTED: Rattus norvegicus similar to Dner protein (LOC316573), mRNA.					
Rattus norvegicus	RefSeq	GI_62661600-I	ILMN_51281	TRIM13_PREDICTED	XM_573800.1	XM_573800.1		364398	62661600	XM_573800.1	Trim13_predicted	XP_573800.1	ILMN_1376030	0004760114	S	352	AAAGGGGCTTTCCCCAAAGGCTGCTCTCAAAGGCTGACCTTCTCAAGGCG				15p12	PREDICTED: Rattus norvegicus tripartite motif protein 13 (predicted) (Trim13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644434-S	ILMN_272779	RGD1311625_PREDICTED	XM_001077411.1	XM_001077411.1		310859	109467657	XM_001077411.1	RGD1311625_predicted	XP_001077411.1	ILMN_1373984	0006620039	S	5563	CCAAAACATAGCTTGGCGGTCTGGGAAGCCAAAATGGCCGGAAAGGCCCG				2q43	PREDICTED: Rattus norvegicus similar to KIAA1546 protein (predicted) (RGD1311625_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663243-S	ILMN_48232	LOC502109	XM_577551.1	XM_577551.1		502109	62663243	XM_577551.1	LOC502109	XP_577551.1	ILMN_1358098	0001400332	S	1640	GAGGCTTATCCTACAATGCTGGGGCCTACCCAAGAGGATCCGTGAGTCTC					PREDICTED: Rattus norvegicus similar to FLJ46321 protein (LOC502109), mRNA.					
Rattus norvegicus	RefSeq	GI_47577876-S	ILMN_285239	OLR1171	NM_001001005.1	NM_001001005.1		405373	47577876	NM_001001005.1	Olr1171	NP_001001005.1	ILMN_1371923	0001990541	S	389	GCCATCCCCTTCGTTACACTGTCATGATGAACCCTCAGGTCTGTGCTATC	8	-	18584677-18584726	8q13	Rattus norvegicus olfactory receptor 1171 (Olr1171), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1171	Olr1171
Rattus norvegicus	RefSeq	GI_16758307-S	ILMN_283251	COX17	NM_053540.1	NM_053540.1		89786	16758307	NM_053540.1	Cox17	NP_445992.1	ILMN_1353069	0004760152	S	80	CAGGAGAAGAAGCCTCTGAAGCCCTGCTGTGCCTGCCCGGAGACCAAGAA	11	-	64185856-64185905	11q21	Rattus norvegicus cytochrome c oxidase, subunit XVII assembly protein homolog (S. cerevisiae) (Cox17), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence IEA]	The directed movement of copper (Cu) ions into, out of, within or between cells [goid 6825] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Assists in the delivery of copper ions to target proteins or compartments [goid 16531] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648437-S	ILMN_282311	RGD1562829_PREDICTED	XM_001072746.1	XM_001072746.1		502916	109474423	XM_001072746.1	RGD1562829_predicted	XP_001072746.1	ILMN_1375079	0005550576	S	660	AGCCGACTTGGACCACTCCAGACAAGTGAGTACCGAGGAAGGGGAGAAGC				4q43-q44	PREDICTED: Rattus norvegicus similar to RAS-like, estrogen-regulated, growth-inhibitor (predicted) (RGD1562829_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665099-S	ILMN_54394	SMARCA5_PREDICTED	XM_226380.4	XM_226380.4		307766	109507959	XM_226380.4	Smarca5_predicted	XP_226380.2	ILMN_1368366	0004670440	S	4505	TGGAATAGACTGGTGAACTGGAGACCTTGAAGCAGGAATACCCAGAGGCC	19	+	29155107-29155156	19q11	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 (predicted) (Smarca5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576340-S	ILMN_269093	OLR1532	NM_001001103.1	NM_001001103.1		405999	47576340	NM_001001103.1	Olr1532	NP_001001103.1	ILMN_1358449	0004150072	S	377	GTAATCCTCTGCTCTATCTTGTGGTGATGTCCAAAAGACTCTGCACTGTG	11	+	41839180-41839229	11q12	Rattus norvegicus olfactory receptor 1532 (Olr1532), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1532	Olr1532
Rattus norvegicus	RefSeq	GI_62638993-S	ILMN_54336	LOC292547	XM_218207.3	XM_218207.3		292547	62638993	XM_218207.3	LOC292547	XP_218207.3	ILMN_1368727	0004610064	S	1521	GAAGACCCCTTGGGGTTGGTGCTTGCCATAACAGTCTTTGTTTTCTCTGC				1q12	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC292547), mRNA.					
Rattus norvegicus	RefSeq	GI_27709103-S	ILMN_59240	LOC302718	XM_228993.1	XM_228993.1		302718	27709103	XM_228993.1	LOC302718	XP_228993.1	ILMN_1372610	0000730722	S	867	CCATCATATCAGAAACTGAAGCAATTGAAAACACAGGCTGTAAGGCAGCC					PREDICTED: Rattus norvegicus similar to family with sequence similarity 47, member A (LOC302718), mRNA.					
Rattus norvegicus	RefSeq	GI_62664253-S	ILMN_53087	RGD1563159_PREDICTED	XM_346955.3	XM_346955.3		361312	109506504	XM_346955.3	RGD1563159_predicted	XP_346956.2	ILMN_1352071	0001690722	S	691	GTACGCAGTTGTAGGAGCAGAACAAAGACTGCAGAAGGGAGGCGGCGCTT	18	-	30562681-30562730	18p11	PREDICTED: Rattus norvegicus RGD1563159 (predicted) (RGD1563159_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58293771-S	ILMN_277106	AMY1A	NM_001010970.1	NM_001010970.1		24203	58293771	NM_001010970.1	Amy1a	NP_001010970.1	ILMN_1356447	0002350458	S	1049	TCATCCATCCTGACTTTCTGGGATGCTCGACTCTATAAAATGGCTGTCGG	2	-	209553150-209553168:209553262-209553292	2q41	Rattus norvegicus amylase, alpha 1A (salivary) (Amy1a), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEP]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the endohydrolysis of 1,4-alpha-D-glucosidic linkages in polysaccharides containing three or more 1,4-alpha-linked D-glucose units [goid 4556] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of amylose or an amylose derivative [goid 16160] [evidence ISS]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]	Amy1a	Amy1a
Rattus norvegicus	RefSeq	GI_62643031-S	ILMN_50882	CAPSL_PREDICTED	XM_215500.4	XM_215500.4		294795	109464492	XM_215500.4	Capsl_predicted	XP_215500.3	ILMN_1369079	0000070180	S	741	TGATGACGACTGCCTGGAAGCTCTAAATACCTGTCCCTGGAGACCAGGCC	2	+	59066164-59066189:59066190-59066213	2q16	PREDICTED: Rattus norvegicus calcyphosine-like (predicted) (Capsl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643594-S	ILMN_274070	RGD1565845_PREDICTED	XM_001063426.1	XM_001063426.1		361968	109466770	XM_001063426.1	RGD1565845_predicted	XP_001063426.1	ILMN_1349563	0000580520	S	919	GTAGGCCAAAGCTGTATCCAGAGGCAGTCTTACCAGGCTTCCTGTCAGGG				2q32	PREDICTED: Rattus norvegicus similar to 5730537D05Rik protein (predicted) (RGD1565845_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661932-S	ILMN_69364	LOC502000	XM_577427.1	XM_577427.1		502000	62661932	XM_577427.1	LOC502000	XP_577427.1	ILMN_1375141	0005550402	S	807	GCAGTCTTCACCAGAATCTCCCCATAGTGTGTTTACCTGACCATTGGAGT				15p13	PREDICTED: Rattus norvegicus similar to mast cell protease 4-like 1 precursor (LOC502000), mRNA.					
Rattus norvegicus	RefSeq	GI_62650980-S	ILMN_64011	LOC503042	XM_578564.1	XM_578564.1		503042	62650980	XM_578564.1	LOC503042	XP_578564.1	ILMN_1356218	0000510403	S	187	AGTGGGAGGCCCAGGCCCAGGAGGGTTCACGTCAGTTGGAAGAGCAGCAA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700025B16 (LOC503042), mRNA.					
Rattus norvegicus	RefSeq	GI_62654385-S	ILMN_54370	CCRL2_PREDICTED	XM_236658.4	XM_236658.4		316019	109484008	XM_236658.4	Ccrl2_predicted	XP_236658.4	ILMN_1362435	0003170746	S	1471	AAGTGGTAGGGACTCTCAGCAAGAGACGCCAAGGGAAGGTCACAGCAGGC	8	-	115452219-115452268	8q32	PREDICTED: Rattus norvegicus chemokine (C-C motif) receptor-like 2 (predicted) (Ccrl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576140-S	ILMN_300503	OLR1381	NM_001000523.1	NM_001000523.1		363549	47576140	NM_001000523.1	Olr1381	NP_001000523.1	ILMN_1362077	0000460133	S	401	AAAAGATGACCCATCAGCTGTGTGCCCTTCTTGTTGTTGAGTCATGGCTG	10	-	12707252-12707301	10q12	Rattus norvegicus olfactory receptor 1381 (Olr1381), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1381	Olr1381
Rattus norvegicus	RefSeq	GI_61557397-S	ILMN_273454	ZDHHC12	NM_001013239.1	NM_001013239.1		366014	61557397	NM_001013239.1	Zdhhc12	NP_001013257.1	ILMN_1359676	0002030017	S	822	GGCTTGCTGGAGAGAAGGCTGTTACTATGCCTAAAAGCCGGAGGCTGTGC	3	-	9096570-9096619	3p12	Rattus norvegicus zinc finger, DHHC domain containing 12 (Zdhhc12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078572-S	ILMN_281642	RGD1307752	NM_001013922.1	NM_001013922.1		296315	62078572	NM_001013922.1	RGD1307752	NP_001013944.1	ILMN_1362863	0003440411	S	797	GCTGTTTGCCAAGTGGAGCTGCTGTTGAATCTGATGCGCCTCTGGATCCG	3	+	147276573-147276622	3q42	Rattus norvegicus similar to RIKEN cDNA 1110008F13 (RGD1307752), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109198	MGC109198
Rattus norvegicus	RefSeq	GI_47576270	ILMN_267995	OLR12	NM_001000540.1	NM_001000540.1		365302	47576270	NM_001000540.1	Olr12	NP_001000540.1	ILMN_1650090	0002100102	S	536	CCCCACTGCTTGCTTTGTCCTGCAGTCCTGTAAGAGTTAATGAGGTGATG	1	-	142339667-142339716	1q32	Rattus norvegicus olfactory receptor 12 (Olr12), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr12	Olr12
Rattus norvegicus	RefSeq	GI_62651134-S	ILMN_295563	LOC500705	NM_001024350.1	NM_001024350.1		500705	66730500	NM_001024350.1	LOC500705	NP_001019521.1	ILMN_1364174	0000610286	S	1108	AGGGTGTGATTTTTGGGTCCCTTTAGCATAGCCTGGGCCTGAGCCTGGGC	6	-	123936567-123936616	6q32	Rattus norvegicus similar to chromosome 14 open reading frame 143 (LOC500705), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981159-S	ILMN_279385	LHCGR	NM_012978.1	NM_012978.1		25477	6981159	NM_012978.1	Lhcgr	NP_037110.1	ILMN_1371979	0003130050	S	2539	GCCATATTCCAAGTGCTTCACATGTCACACTAGGAGGCACAGATGCAAAC				6q12	Rattus norvegicus luteinizing hormone/choriogonadotropin receptor (Lhcgr), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side opposite to the side that faces the cytoplasm [goid 31233] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of directing proteins towards the lysosome using signals contained within the protein [goid 6622] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; Any process that initiates the activity of the inactive enzyme adenylate cyclase [goid 7190] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IDA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence IDA]; Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 10524] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The series of molecular signals mediated by luteinizing hormone [goid 42700] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones [goid 46886] [evidence IDA]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling [goid 50850] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria [goid 51281] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IPI]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an ATPase, any enzyme that catalyzes the hydrolysis of ATP [goid 51117] [evidence IPI]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with lutropin-choriogonadotropic hormone to initiate a change in cell activity [goid 4964] [evidence IEA]	LH receptor; Lhr	LH receptor; Lhr
Rattus norvegicus	RefSeq	GI_62667331-S	ILMN_56706	LOC501633	XM_577030.1	XM_577030.1		501633	62667331	XM_577030.1	LOC501633	XP_577030.1	ILMN_1364378	0003710056	S	516	TGCCATCAGGTCCGGCAAAACTGCCTTTTATGGTGTGGTCTGCCAGCTTC					PREDICTED: Rattus norvegicus LOC501633 (LOC501633), mRNA.					
Rattus norvegicus	RefSeq	GI_56605653-S	ILMN_277474	MTX2	NM_001008286.1	NM_001008286.1		288150	56605653	NM_001008286.1	Mtx2	NP_001008287.1	ILMN_1366589	0002470026	S	713	GACGTAGACCGGTGCTGTCAAGCCCTTTCCCAAAGACTGGGAACACAACC	3	+	57518211-57518260	3q23	Rattus norvegicus metaxin 2 (Mtx2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]			MGC106000	MGC106000
Rattus norvegicus	RefSeq	GI_62651072-S	ILMN_289417	ACYP1_PREDICTED	XM_001060176.1	XM_001060176.1		299203	109479685	XM_001060176.1	Acyp1_predicted	XP_001060176.1	ILMN_1372364	0000670082	S	304	AAGGACAACTGCAAGGCCCCGTCTCCAAGGTCCGCTTTATGCAGGAGTGG				6q31	PREDICTED: Rattus norvegicus acylphosphatase 1, erythrocyte (common) type (predicted) (Acyp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393931-S	ILMN_272068	PDE4D	NM_017032.1	NM_017032.1		24627	8393931	NM_017032.1	Pde4d	NP_058728.1	ILMN_1350003	0003800008	S	1932	TGACGAGCAGGTTGAAGAGGAGGCTGTAGCAGAAGAGGAAAGCCAGCCCC				2q14	Rattus norvegicus phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) (Pde4d), transcript variant 5, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6198] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEP]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence IDA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638901-S	ILMN_49577	LOC308350	XM_218261.3	XM_218261.3		308350	62638901	XM_218261.3	LOC308350	XP_218261.3	ILMN_1348983	0006220494	S	3704	TGCCCAGCTGCACATCATGACACCAAGACAGGGCAGGCAAACTTCCCTCT				1q12	PREDICTED: Rattus norvegicus similar to PIRB1 (LOC308350), mRNA.					
Rattus norvegicus	RefSeq	GI_62643321-S	ILMN_65139	NDUFB5_PREDICTED	XM_215544.4	XM_215544.4		294964	109464725	XM_215544.4	Ndufb5_predicted	XP_215544.2	ILMN_1370265	0000380167	S	512	GGCCGACTTACGGTTAAAGGAGCTGGAGGTTCGAAGACTGATGCGTGCCC	2	+	118960142-118960153:118962648-118962685	2q25	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 (predicted) (Ndufb5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56961651-S	ILMN_272513	ADA	NM_130399.2	NM_130399.2		24165	56961651	NM_130399.2	Ada	NP_569083.1	ILMN_1358817	0004060072	S	1160	CCCTGAAGATGGCAAGGCCGCTTCTCCGAGCCTCATCCTGTGAATGGAGT	3	-	154636715-154636764	3q42	Rattus norvegicus adenosine deaminase (Ada), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; The process whereby a B cell in the spleen acquires the specialized features of a germinal center B cell. Germinal center B cells are rapidly cycling B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA) [goid 2314] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of germinal center formation [goid 2636] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of mature B cell apoptosis [goid 2906] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 6154] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 6154] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 6154] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA [goid 6157] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with phosphate on its glycose moiety [goid 9168] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; Any process that activates or increases the rate or extent of B cell proliferation [goid 30890] [evidence ISS]; Any process which produces a purine nucleotide from derivatives of it, without de novo synthesis [goid 32261] [evidence IEA]; Any process which produces a purine nucleotide from derivatives of it, without de novo synthesis [goid 32261] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus [goid 33197] [evidence IDA]; Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin [goid 33632] [evidence IEA]; Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin [goid 33632] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence IEA]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals [goid 45187] [evidence IEP]; Any process that modulates the frequency, rate or extent of T cell differentiation [goid 45580] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate) [goid 46061] [evidence ISS]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence TAS]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence IDA]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence IDA]; The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes [goid 46085] [evidence IDA]; The chemical reactions and pathways resulting in the formation of hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate [goid 46101] [evidence ISS]; The chemical reactions and pathways resulting in the formation of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs [goid 46103] [evidence ISS]; The chemical reactions and pathways resulting in the formation of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs [goid 46103] [evidence IEA]; The chemical reactions and pathways resulting in the formation of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs [goid 46103] [evidence ISS]; The chemical reactions and pathways resulting in the formation of xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids [goid 46111] [evidence ISS]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence ISS]; The process whose specific outcome is the progression of Peyer's patches over time, from their formation to the mature structure. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes [goid 48541] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell activation [goid 50870] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 60169] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands [goid 60169] [evidence ISS]	Interacting selectively with a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose [goid 1883] [evidence IDA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IDA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence ISS]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IDA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IEA]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence ISS]; Catalysis of the reaction: adenosine + H2O = inosine + NH3 [goid 4000] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC108610	MGC108610
Rattus norvegicus	RefSeq	GI_62664694	ILMN_285142	RGD1563118_PREDICTED	XM_344707.2	XM_344707.2		364909	62664694	XM_344707.2	RGD1563118_predicted	XP_344708.2	ILMN_1651092	0005270364	S	582	TTACCTCCAGGGGAAAGCCATGCCACCAGGTTCCCGTCTGGACAACTTGC	18	-	77832563-77832612	18q12.3	PREDICTED: Rattus norvegicus similar to DumPY, shorter than wild-type DPY-3 (C. elegans) (predicted) (RGD1563118_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655152-S	ILMN_69179	LOC501154	XM_580165.1	XM_580165.1		501154	62655152	XM_580165.1	LOC501154	XP_580165.1	ILMN_1369033	0001170128	S	552	ATGCATCCACAGTGGGGGGCTCTCAGGATGTCTCCACACAGCTGCAGACC					PREDICTED: Rattus norvegicus LOC501154 (LOC501154), mRNA.					
Rattus norvegicus	RefSeq	GI_62657926-S	ILMN_61537	NDUFB4_PREDICTED	XM_213619.3	XM_213619.3		288088	62657926	XM_213619.3	Ndufb4_predicted	XP_213619.3	ILMN_1374243	0004590577	S	212	GGAGAACGCCTTGCTTCTTGTCATTCTGCTCTCAAACGCCCGTCGAAGAC				11q21	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa (predicted) (Ndufb4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656893-S	ILMN_53588	RGD1562292_PREDICTED	XM_573183.2	XM_573183.2		497987	109488879	XM_573183.2	RGD1562292_predicted	XP_573183.1	ILMN_1361704	0001940195	S	1746	TCTCTTCCGAGACCATTTGTAGTGAGCGAGTGGATGCTGTGCTATGCGCG	10	+	85037953-85038002	10q31	PREDICTED: Rattus norvegicus similar to homeotic protein Hox B5 - mouse (predicted) (RGD1562292_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928797-S	ILMN_279043	NRG1	NM_031588.1	NM_031588.1		112400	13928797	NM_031588.1	Nrg1	NP_113776.1	ILMN_1357348	0004780092	S	2876	AGCCAAAGGTTTGCTTCACTGGACTCTGAGATAATAGTAGACCCAGCAGC	16	+	64125813-64125862	16q12.3	Rattus norvegicus neuregulin 1 (Nrg1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands [goid 7422] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEP]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IMP]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEP]; Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer [goid 43497] [evidence ISS]; The disaggregation of a protein complex into its constituent components, occurring at the level of an individual cell. Protein complexes may have other associated non-protein prosthetic groups, such as nucleic acids, metal ions or carbohydrate groups [goid 43624] [evidence ISS]; The chemical reactions and pathways involving neurotransmitter receptors [goid 45213] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a substance from a cell or group of cells [goid 51048] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of striated muscle cell differentiation [goid 51155] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction [goid 55007] [evidence ISS]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]	The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Interacting selectively with the protein-tyrosine kinase receptor Neu/ErbB-2/HER2 [goid 5176] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Interacting selectively with the protein-tyrosine kinase receptor ErbB-3/HER3 [goid 43125] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658102-S	ILMN_48483	LOC501781	XM_577184.1	XM_577184.1		501781	62658102	XM_577184.1	LOC501781	XP_577184.1	ILMN_1353368	0000110484	S	166	CTAACCTGTCCTTTCCCAGTGCACAGTCTCAGCACACTGGGGAGCTCTGC					PREDICTED: Rattus norvegicus similar to stefin-A1-like 1 precursor (LOC501781), mRNA.					
Rattus norvegicus	RefSeq	GI_32996728-S	ILMN_293802	RAB40C	NM_182675.1	NM_182675.1		359728	32996728	NM_182675.1	Rab40c	NP_872616.1	ILMN_1362044	0005900164	S	743	GGGGCAGTGGCAGCAAGGGCAACAGCCTTAAGAGGTCCAAGTCCATCCGT	10	-	15147914-15147963	10q12	Rattus norvegicus Rab40c, member RAS oncogene family (Rab40c), mRNA.	Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process by which receptor molecules are returned to an active state and in an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal [goid 1881] [evidence NAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GDP, guanosine 5'-diphosphate [goid 19003] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62078970-S	ILMN_299435	UBLCP1	NM_001014117.1	NM_001014117.1		360514	62078970	NM_001014117.1	Ublcp1	NP_001014139.1	ILMN_1352965	0005360110	S	1800	AAGGCACCGTCACCAACTCCACTCTCAGAAGCATGGATAGCATTTCTGCC	10	-	29612296-29612345	10q21	Rattus norvegicus ubiquitin-like domain containing CTD phosphatase 1 (Ublcp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	RGD1310386; MGC105972	RGD1310386; MGC105972
Rattus norvegicus	RefSeq	GI_62650673-S	ILMN_48628	RGD1309138_PREDICTED	XM_345669.3	XM_345669.3		366619	109478206	XM_345669.3	RGD1309138_predicted	XP_345670.1	ILMN_1361567	0002850148	S	1510	ATGGCAGACAGGGAATAAACAAGAACAAGAGAGGACTTGGAGGAAGTGGC	6	-	72152114-72152163	6q23	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC9912 (predicted) (RGD1309138_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659289-S	ILMN_58954	LOC498226	XM_573447.1	XM_573447.1		498226	62659289	XM_573447.1	LOC498226	XP_573447.1	ILMN_1354769	0002650128	S	1153	CCTATCTGACGCCCCTTTCCCTACCCCCAACACAGCCATTCATCCGGGAA				13q13	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32569 (LOC498226), mRNA.					
Rattus norvegicus	RefSeq	GI_42734494-S	ILMN_299218	ID3	NM_013058.2	NM_013058.2		25585	42734494	NM_013058.2	Id3	NP_037190.1	ILMN_1360216	0005270537	S	689	TTCCGAAAATGGGGTGTCGAGAAGGGTGTGGGGGGTACACGAGTGGCTGC	5	+	154935454-154935503	5q36	Rattus norvegicus inhibitor of DNA binding 3 (Id3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA replication [goid 6275] [evidence IMP]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence TAS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence TAS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence TAS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655191-S	ILMN_48638	LOC301509	XM_237286.4	XM_237286.4		301509	109486249	XM_237286.4	LOC301509	XP_237286.4	ILMN_1364054	0006100725	S	7477	GGCCTCCATTTAAGCGCATGGGGGTCCTCAGGGGTGGCATTGTACTGATA	9	-	73234398-73234447	9q33	PREDICTED: Rattus norvegicus similar to tensin (LOC301509), mRNA.					
Rattus norvegicus	RefSeq	GI_51243042-S	ILMN_302954	LY6G6E	NM_001001972.1	NM_001001972.1		406866	51243042	NM_001001972.1	Ly6g6e	NP_001001972.1	ILMN_1366964	0003140047	S	783	ATGAGACTTGGTGCCTGAGGGTCTCAAGAACAGAGGGCTACCTTGGGGAG	20	-	3808833-3808882	20p12	Rattus norvegicus lymphocyte antigen 6 complex, locus G6E (Ly6g6e), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164040-S	ILMN_280330	V1RC43	NM_001009528.1	NM_001009528.1		494248	57164040	NM_001009528.1	V1rc43	NP_001009528.1	ILMN_1359354	0004850110	S	301	CAGGCTGTCACTATCAGTCCCAGTACCTCGCTGTTGGCAAAATTTAAATG	4	+	86890944-86890993	4q24	Rattus norvegicus vomeronasal 1 receptor, C43 (V1rc43), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576822-S	ILMN_265220	OLR1L	NM_001000538.1	NM_001000538.1		365170	47576822	NM_001000538.1	Olr1l	NP_001000538.1	ILMN_1365616	0003060154	S	759	GGTGTCGATGAGCTATGGAAGCTGCATCATCATGTACCTGAACCCCACGC	1	+	64221864-64221913	1q12	Rattus norvegicus olfactory receptor 1-like (Olr1l), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1	Olr1
Rattus norvegicus	RefSeq	GI_62646002-S	ILMN_63535	LOC499904	XM_575250.1	XM_575250.1		499904	62646002	XM_575250.1	LOC499904	XP_575250.1	ILMN_1368256	0002510279	S	571	CCCTTCAGTCTGGATGCCAGGAGTCGCAGAGATATGCAGTCCAGTTATGG				3q41	PREDICTED: Rattus norvegicus similar to ventral prostate-specific protein (LOC499904), mRNA.					
Rattus norvegicus	RefSeq	GI_62652287-S	ILMN_272203	MYO1A	XM_001056742.1	XM_001056742.1		299509	109482093	XM_001056742.1	Myo1a	XP_001056742.1	ILMN_1362037	0002690170	S	2921	CCAGGCCCAAATTGTCATTAAGCTGGAGGATGTGGCTGGGGTGTCAGTCA				7q22	PREDICTED: Rattus norvegicus myosin IA (Myo1a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence NAS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence TAS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence ISS]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence ISS]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence IDA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]	The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence ISS]; Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell [goid 30033] [evidence ISS]; Assembly of the parallel bundle of actin filaments at the core of a microvillus [goid 30034] [evidence NAS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence IMP]; Any process by which a vesicle or vesicles are transported to, and/or maintained in, a specific location [goid 51648] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645030-S	ILMN_61156	LOC499790	XM_580017.1	XM_580017.1		499790	62645030	XM_580017.1	LOC499790	XP_580017.1	ILMN_1350481	0001450438	S	403	ACAGGCCCAGAAAGCAAGGGGCAGTCCGTGGTGCTTGTGGTTTCCAATGT					PREDICTED: Rattus norvegicus LOC499790 (LOC499790), mRNA.					
Rattus norvegicus	RefSeq	GI_62651830-S	ILMN_61797	RGD1306886_PREDICTED	XM_234946.4	XM_234946.4		314659	109480338	XM_234946.4	RGD1306886_predicted	XP_234946.2	ILMN_1350781	0006220609	S	1215	CGGGGGCTCCATTTTGGCCTCACTACATGCTTTCCAGTCCTGTTGGGTCC	7	+	15945309-15945358	7q12	PREDICTED: Rattus norvegicus similar to actin-like 7-alpha-like protein (predicted) (RGD1306886_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51092265-S	ILMN_67287	HPRT1	NM_012583.2	NM_012583.2		24465	70778838	NM_012583.2	Hprt1	NP_036715.1	ILMN_1367708	0000770563	S	866	TGTCTGTTGCTGCGTCCCTTTTGATTTGCACTATGAGCCTGTAGGCAGCC	X	+	139961250-139961299	Xq36	Rattus norvegicus hypoxanthine phosphoribosyltransferase 1 (Hprt1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6164] [evidence ISS]; Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence IEA]; Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence ISS]; Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis [goid 6166] [evidence ISS]; Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis [goid 6168] [evidence IEA]; Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis [goid 6168] [evidence ISS]; Any process that generates guanine, 2-amino-6-hydroxypurine, from derivatives of it without de novo synthesis [goid 6178] [evidence IEA]; Any process that generates guanine, 2-amino-6-hydroxypurine, from derivatives of it without de novo synthesis [goid 6178] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence IEA]; The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites [goid 7625] [evidence ISS]; The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine) [goid 9116] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence ISS]; The progression of the striatum over time from its initial formation until its mature state. The striatum is a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking [goid 21756] [evidence IEA]; The progression of the striatum over time from its initial formation until its mature state. The striatum is a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking [goid 21756] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex [goid 21895] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex [goid 21895] [evidence ISS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence IEA]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 45964] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 45964] [evidence ISS]; The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine [goid 46083] [evidence ISS]; The chemical reactions and pathways involving hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate [goid 46100] [evidence IDA]; The chemical reactions and pathways involving hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate [goid 46100] [evidence ISS]; The expansion of a lymphocyte population by cell division [goid 46651] [evidence IEA]; The expansion of a lymphocyte population by cell division [goid 46651] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence IEA]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with a purine, an organic nitrogenous base [goid 2060] [evidence IDA]; Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4422] [evidence IDA]; Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4422] [evidence IEA]; Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4422] [evidence ISS]; Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4422] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Hprt1; MGC112554; Hgprtase	Hprt1; MGC112554; Hgprtase
Rattus norvegicus	RefSeq	GI_62651713-S	ILMN_55767	LOC500792	XM_580121.1	XM_580121.1		500792	62651713	XM_580121.1	LOC500792	XP_580121.1	ILMN_1366101	0005670113	S	88	GGGGTGTGTGCGAGGGCGCAGTAAAGAAACCTAAATGGCCGCTCTGTTGG					PREDICTED: Rattus norvegicus LOC500792 (LOC500792), mRNA.					
Rattus norvegicus	RefSeq	GI_6978636-S	ILMN_66384	CD74	NM_013069.1	NM_013069.1		25599	6978636	NM_013069.1	Cd74	NP_037201.1	ILMN_1373953	0000510341	S	690	AATGTTCTTGTGAAGACAGAAGCCAGCTCTGCACGGCGGCACGTCCCCTG				18q12.1	Rattus norvegicus CD74 antigen (invariant polpypeptide of major histocompatibility class II antigen-associated) (Cd74), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IEA]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein [goid 19886] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death [goid 45059] [evidence ISS]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of T cell differentiation [goid 45581] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation [goid 45582] [evidence ISS]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence ISS]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence IEA]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence ISS]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence ISS]; Interacting selectively with major histocompatibility complex class II molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42289] [evidence IEA]	INVG34	INVG34
Rattus norvegicus	RefSeq	GI_56799423-S	ILMN_289430	RHOV	NM_138542.2	NM_138542.2		171581	56799423	NM_138542.2	Rhov	NP_612551.1	ILMN_1360406	0003850736	S	1568	GCAGGAAGTGAGAGTTAAGGCCCAGCAAAGGGAGGGGGAGGAGCTGCAAA	3	-	105787165-105787214	3q35	Rattus norvegicus ras homolog gene family, member V (Rhov), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Chp; Arhv; MGC93183	Chp; Arhv; MGC93183
Rattus norvegicus	RefSeq	GI_9507208-S	ILMN_279808	TRP63	NM_019221.1	NM_019221.1		246334	9507208	NM_019221.1	Trp63	NP_062094.1	ILMN_1374236	0006040735	S	4590	GGATGCCTCTCACCGGAGAATGAGATTCCTTCGCGTGGTGGTGAAGTAGG	11	-	76900950-76900999	11q23	Rattus norvegicus transformation related protein 63 (Trp63), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Vesicular particles formed from disrupted endoplasmic reticulum membranes and studded with ribosomes on the outside [goid 19718] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division [goid 1302] [evidence IMP]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates [goid 1736] [evidence ISS]; The process by which the anatomical structures of polarized epithelium are generated and organized. Morphogenesis pertains to the creation of form. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis [goid 1738] [evidence ISS]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence ISS]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface [goid 2064] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; A cell-cell signaling process occurring between the two gastrulation-generated layers of the ectoderm and the mesoderm [goid 7499] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The inherent decline of a multicellular organism over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 10259] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid [goid 30850] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a polarized epithelial cell. The polarized epithelial cell can be any of the cells within an epithelium where the epithelial sheet is oriented with respect to the planar axis [goid 30859] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process by which the anatomical structures of the tail are generated and organized. Morphogenesis pertains to the creation of form. The tail is the hindmost part of some animals [goid 35121] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the initiation of apoptosis (programmed cell death) [goid 42771] [evidence ISS]; The process by which the anatomical structures of the skin are generated and organized. Morphogenesis pertains to the creation of form. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43589] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of keratinocyte differentiation [goid 45617] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway [goid 45747] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [goid 48485] [evidence ISS]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence ISS]; The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure [goid 48745] [evidence ISS]; The process by which the anatomical structures of female genitalia are generated and organized. Morphogenesis pertains to the creation of form [goid 48807] [evidence ISS]; The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits [goid 51289] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]; The process whose specific outcome is the progression of the urinary bladder over time, from its formation to the mature structure. The urinary bladder is an elastic, muscular sac situated in the anterior part of the pelvic cavity in which urine collects before excretion [goid 60157] [evidence ISS]; The separation of the single opening of the digestive, urinary, and reproductive tracts, the cloaca, into multiple isolated openings during development [goid 60197] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with damaged DNA [goid 3684] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]	Tp63	Tp63
Rattus norvegicus	RefSeq	GI_62642964-S	ILMN_70101	RGD1561503_PREDICTED	XM_574857.2	XM_574857.2		499536	109464440	XM_574857.2	RGD1561503_predicted	XP_574857.2	ILMN_1366603	0002120114	S	637	GACACTAAACTAGCAAGAGCTCAGACTAAGTCAAAACCATATCCGGAAGC	2	-	52462946-52462995	2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein AN1443.2 (predicted) (RGD1561503_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656480-S	ILMN_51943	LOC497671	XM_579162.1	XM_579162.1		497671	62656480	XM_579162.1	LOC497671	XP_579162.1	ILMN_1357534	0007100497	S	403	GCCCCAAGCTCTGTGTGTGTCTGGTGGTGCTATTTTGGATAATGACATCA					PREDICTED: Rattus norvegicus hypothetical gene supported by AF091572; NM_001006609 (LOC497671), mRNA.					
Rattus norvegicus	RefSeq	GI_62666938-S	ILMN_57077	LOC501582	XM_576985.1	XM_576985.1		501582	62666938	XM_576985.1	LOC501582	XP_576985.1	ILMN_1349896	0002230706	S	1701	GGCCTTTCTGGAGGAAATGTGCCACTGGGAGCTGGTGTTGGGTGTATCAC				Xq31	PREDICTED: Rattus norvegicus similar to peptide chain release factor 3 (LOC501582), mRNA.					
Rattus norvegicus	RefSeq	GI_53850633-S	ILMN_285107	GIT2	NM_001005553.1	NM_001005553.1		304546	53850633	NM_001005553.1	Git2	NP_001005553.1	ILMN_1367641	0002190008	S	2769	TTCCAAGCATTGGCAGTGAGAGAGCTTTCCGTCCTGGGGGCCTCAGCTCG	12	+	43158494-43158543	12q16	Rattus norvegicus G protein-coupled receptor kinase interacting ArfGAP 2 (Git2), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]	MGC94099	MGC94099
Rattus norvegicus	RefSeq	GI_62651743-S	ILMN_267397	ADAMTSL5_PREDICTED	XM_001076530.1	XM_001076530.1		314626	109481575	XM_001076530.1	Adamtsl5_predicted	XP_001076530.1	ILMN_1370791	0006040348	S	1369	CTTCTTCACTACTGTGGCAGCGACTTTGTGTTCCAGGCCCGTGTGCTGGG				7q11	PREDICTED: Rattus norvegicus ADAMTS-like 5 (predicted) (Adamtsl5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083644-S	ILMN_292581	RAB5A	NM_022692.1	NM_022692.1		64633	12083644	NM_022692.1	Rab5a	NP_073183.1	ILMN_1366994	0005130369	S	571	CGCAAACTCAGCCAGAGGAAGAGGAGTAGACCTTACTGAGCCTGCACAGC	9	-	1492892-1492941	9q11	Rattus norvegicus RAB5A, member RAS oncogene family (Rab5a), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence NAS]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31542952-S	ILMN_295391	HES1	NM_024360.2	NM_024360.2		29577	31542952	NM_024360.2	Hes1	NP_077336.2	ILMN_1361750	0001580279	S	1497	TCATCCCGGTCTACACCAGCAACAGCGGGACCTCGGTGGGTCCTAACGCA				11q22	Rattus norvegicus hairy and enhancer of split 1 (Drosophila) (Hes1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process by which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. Morphogenesis pertains to the creation of form. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 21555] [evidence ISS]; The process whose specific outcome is the progression of the oculomotor nerve over time, from its formation to the mature structure. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle [goid 21557] [evidence ISS]; The process whose specific outcome is the progression of the trochlear nerve over time, from its formation to the mature structure. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle [goid 21558] [evidence ISS]; The process by which the anatomical structure of the hindbrain is generated and organized. Morphogenesis pertains to the creation of form. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions [goid 21575] [evidence ISS]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an auditory hair cell [goid 42491] [evidence ISS]; Process by which a cell becomes capable of differentiating autonomously into an auditory hair cell regardless of its environment; upon determination, the cell fate cannot be reversed [goid 42668] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of auditory hair cell differentiation [goid 45608] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; The process controlling the timing and/or rate at which relatively unspecialized cells acquire specialized features [goid 48505] [evidence ISS]; The process by which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron [goid 48667] [evidence ISS]; The process controlling the timing and/or rate at which a relatively unspecialized cell acquires features of a neuron [goid 60164] [evidence ISS]; The process controlling the timing and/or rate at which a relatively unspecialized cell acquires features of a neuron [goid 60164] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647294-A	ILMN_267620	GRID2	NM_024379.1	NM_024379.1		79220	13259381	NM_024379.1	Grid2	NP_077355.1	ILMN_1376583	0000510095	S	4480	AAGCTGCAAGCGAATCACTGTAACTGAAGCTGGGGAGGAGGGGAAACCCC	4	+	94054619-94054668	4q24-q31	Rattus norvegicus glutamate receptor, ionotropic, delta 2 (Grid2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IEA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence ISS]; The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse [goid 60134] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758903-S	ILMN_290700	SLC6A7	NM_053996.1	NM_053996.1		117100	16758903	NM_053996.1	Slc6a7	NP_446448.1	ILMN_1369088	0004570601	S	2549	GGGAGCTTTAGGGCTGAGAGGTGTGAAAGATTGCAGAAGAGGCTAGAGGG	18	-	56959087-56959136	18q12.1	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 (Slc6a7), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]; The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells [goid 15824] [evidence IDA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of L-proline from one side of a membrane to the other. L-proline is pyrrolidine-2-carboxylic acid [goid 15193] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Prot	Prot
Rattus norvegicus	RefSeq	GI_62654454-S	ILMN_57856	RGD1308260_PREDICTED	XM_236774.4	XM_236774.4		301111	109484068	XM_236774.4	RGD1308260_predicted	XP_236774.4	ILMN_1351617	0002450162	S	1908	AGACCTTGTTCTGATCGTGGTGGCTGTGGAGCACGCACTCTTGGCTTTGA	8	-	122003460-122003479:122049199-122049228	8q32	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10375 (predicted) (RGD1308260_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648929-S	ILMN_278797	RGD1565350_PREDICTED	XR_008772.1	XR_008772.1		362513	109476431	XR_008772.1	RGD1565350_predicted		ILMN_1356332	0001500010	S	2111	CTTAGGATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGGATGAAGGG				5q22	PREDICTED: Rattus norvegicus similar to Shb protein (predicted) (RGD1565350_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173745-S	ILMN_265518	STK17B	NM_133392.1	NM_133392.1		170904	19173745	NM_133392.1	Stk17b	NP_596883.1	ILMN_1370817	0004610670	S	2067	GGCAGCTGACTGAGTGTTGGGTGTCTAAGTCTCAGGATGCAAGCCCATCG	9	-	52567352-52567401	9q31	Rattus norvegicus serine/threonine kinase 17b (Stk17b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IMP]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; Cell death resulting from activation of endogenous cellular processes [goid 12501] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Drak2	Drak2
Rattus norvegicus	RefSeq	GI_14010892-S	ILMN_281732	CROT	NM_031987.1	NM_031987.1		83842	14010892	NM_031987.1	Crot	NP_114193.1	ILMN_1354653	0004150100	S	2263	GATGCTAATTTCCCTGACATCAGTGCCTTCTACATCCAGCACAGGAGTAC	4	-	22024284-22024333	4q12	Rattus norvegicus carnitine O-octanoyltransferase (Crot), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]	The directed movement of medium-chain fatty acids into, out of, within or between cells. Medium-chain fatty acids are fatty acids with a chain length of between 8 and 12 carbons [goid 1579] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; The directed movement of fatty acids into, out of, within or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 15908] [evidence ISS]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]	Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the reaction: octanoyl-CoA + L-carnitine = CoA + L-octanoylcarnitine [goid 8458] [evidence IDA]; Catalysis of the reaction: octanoyl-CoA + L-carnitine = CoA + L-octanoylcarnitine [goid 8458] [evidence TAS]; Catalysis of the reaction: octanoyl-CoA + L-carnitine = CoA + L-octanoylcarnitine [goid 8458] [evidence IEA]; Catalysis of the reaction: octanoyl-CoA + L-carnitine = CoA + L-octanoylcarnitine [goid 8458] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18959213-S	ILMN_273342	MAP2K2	NM_133283.1	NM_133283.1		58960	18959213	NM_133283.1	Map2k2	NP_579817.1	ILMN_1362844	0006130037	S	1289	GACAGCAGTGGTGTGTGTTGTGGCAGGGGACCTGTGCCTGTGCATTTGGA	7	-	10074685-10074734	7q11	Rattus norvegicus mitogen activated protein kinase kinase 2 (Map2k2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IMP]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Prkmk2	Prkmk2
Rattus norvegicus	RefSeq	GI_47576056-S	ILMN_273138	OLR1423	NM_001000006.1	NM_001000006.1		287309	47576056	NM_001000006.1	Olr1423	NP_001000006.1	ILMN_1358582	0002230021	S	785	CCTATATGCTACCTAACTCGTTCCACACTCCTGAGAAGAACATGGTGGTG	10	-	44350586-44350635	10q22	Rattus norvegicus olfactory receptor 1423 (Olr1423), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1423	Olr1423
Rattus norvegicus	RefSeq	GI_62649393-S	ILMN_278965	RGD1307814_PREDICTED	XM_001060075.1	XM_001060075.1		362559	109476878	XM_001060075.1	RGD1307814_predicted	XP_001060075.1	ILMN_1375196	0002190341	S	2449	TGTGGTGGGTTCATTTGGAATAGCGTGCTCTCTGGTGTTTGGGGGCGGGG				5q35	PREDICTED: Rattus norvegicus similar to KIAA1730 protein (predicted) (RGD1307814_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649391-S	ILMN_278965	RGD1307814_PREDICTED	XM_001060075.1	XM_001060075.1		362559	109476878	XM_001060075.1	RGD1307814_predicted	XP_001060075.1	ILMN_1356449	0007100435	S	3020	CCCTCCCACCTTAGCAGAGGGACACCAGGAGAACCTTACCCATTTTCAGA				5q35	PREDICTED: Rattus norvegicus similar to KIAA1730 protein (predicted) (RGD1307814_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642174-S	ILMN_52269	PRKG1_PREDICTED	XM_345021.2	XM_345021.2		365449	62642174	XM_345021.2	Prkg1_predicted	XP_345022.2	ILMN_1354776	0005390093	S	884	ACCCGTCTGGATTAGAAAGAGCCCCACTTTTCACACCAGGCAGCCTACCC					PREDICTED: Rattus norvegicus protein kinase, cGMP-dependent, type I (predicted) (Prkg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424267-S	ILMN_288435	DUSP5	NM_133578.1	NM_133578.1		171109	19424267	NM_133578.1	Dusp5	NP_598262.1	ILMN_1355177	0000610546	S	2291	CCAAGGGGGGAAAGGCAATAAGTCACCCCCAAACCCATGTGAATGTGAAG	1	+	259767517-259767566	1q55	Rattus norvegicus dual specificity phosphatase 5 (Dusp5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IDA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]	Cpg21	Cpg21
Rattus norvegicus	RefSeq	GI_62653565-S	ILMN_291217	PVRL1	XM_001066246.1	XM_001066246.1		192183	109484586	XM_001066246.1	Pvrl1	XP_001066246.1	ILMN_1350391	0004070301	S	1598	CAGGACGGCTATGGGGACCGGACTCTGGGCTACCAATACGACCCTGAACA				8q22	PREDICTED: Rattus norvegicus poliovirus receptor-related 1 (Pvrl1), mRNA.	Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence IEA]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; Complex of peripheral cytoplasmic proteins (alpha-, beta- and gamma-catenin) that interact with the cytoplasmic region of uvomorulin/E-cadherin to connect it to the actin cytoskeleton [goid 16342] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The process by which the anatomical structures of the lens are generated and organized. Morphogenesis pertains to the creation of form. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2089] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence IEA]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IMP]; The process by which a virion enters a host cell, including virion attachment and penetration [goid 46718] [evidence IMP]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse [goid 51963] [evidence IMP]; The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates [goid 60041] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a virion, either by binding to components of the capsid or the viral envelope [goid 46790] [evidence IMP]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62651239-S	ILMN_53842	LOC314443	XM_243356.3	XM_243356.3		314443	62651239	XM_243356.3	LOC314443	XP_243356.3	ILMN_1370400	0002940408	S	933	TGCTGCATCAGTGTGCTTCCTGCTGTGGGGGCGAGTTCTTACACAGGCAG					PREDICTED: Rattus norvegicus similar to pre-mRNA splicing factor-like (LOC314443), mRNA.					
Rattus norvegicus	RefSeq	GI_62651176-S	ILMN_262826	RGD1311117_PREDICTED	XM_001067752.1	XM_001067752.1		314401	109479848	XM_001067752.1	RGD1311117_predicted	XP_001067752.1	ILMN_1369861	0001660332	S	7469	CTAGTTTAGTATACAGACGTGCAAAGGCCGGAGAGGGCCACCAACGAAGC				6q32	PREDICTED: Rattus norvegicus similar to KIAA1409 protein (predicted) (RGD1311117_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.13470	ILMN_161358	RN.13470	Rn.13470		Rn.13470		46870942	CN542786			ILMN_1530311	0004610324	S	488	TTTCTCACCCTTTTCTGTGAGGATTTTAGAGAGTCCAAATCAACTTAAAT					UI-R-EA0-clm-b-03-0-UI.s1 UI-R-EA0 Rattus norvegicus cDNA clone UI-R-EA0-clm-b-03-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_11177875-S	ILMN_268952	XLAS	NM_001024823.1	NM_001024823.1		60429	67782341	NM_001024823.1	Xlas	NP_001019994.1	ILMN_1359634	0000130154	S	2024	GCATCTGCGAGATCGAGTCCTCCAGCGATGAGTCGGAAGAAGGGGCCACT					Rattus norvegicus XLas protein (Xlas), transcript variant 2, mRNA.				Xlas/Alex; Gnas	Xlas/Alex; Gnas
Rattus norvegicus	RefSeq	GI_34854105-S	ILMN_301713	RGD1565231_PREDICTED	XM_344836.1	XM_344836.1		365140	34854105	XM_344836.1	RGD1565231_predicted	XP_344837.1	ILMN_1364487	0006400707	S	1219	GTGGCTGGTCATCTCAGGCCACTACCGATGACACCTACACAGGACCACTA	1	+	51793037-51793086	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1565231_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262176-S	ILMN_281841	RHOA	NM_057132.2	NM_057132.2		117273	54262176	NM_057132.2	Rhoa	NP_476473.1	ILMN_1349268	0006180300	S	1673	CTCCTTTCTCCACACTGTTATCCAAGTCGCCTCCCAGAGGAGCCACCAGT	16|NW_047483.1	+	93345-93394		Rattus norvegicus ras homolog gene family, member A (Rhoa), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The binding of a cell to the extracellular matrix via adhesion molecules [goid 7160] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament [goid 8064] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence TAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence IMP]; A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals [goid 31098] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43124] [evidence IMP]; Assembly of a stress fiber, the bundle of microfilaments and other proteins found in fibroblasts [goid 43149] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups [goid 43200] [evidence IEP]; Any process that activates or increases the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 43280] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IEP]; Any process that modulates the frequency, rate or extent of dendrite development [goid 50773] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel [goid 51927] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence NAS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	Arha; MGC72339; Arha2	Arha; MGC72339; Arha2
Rattus norvegicus	RefSeq	GI_62651851-S	ILMN_62591	RGD1561305_PREDICTED	XM_580123.2	XM_580123.2		500808	109480353	XM_580123.2	RGD1561305_predicted	XP_580123.2	ILMN_1357685	0000380735	S	612	CTGGGAGTGTTGGGTATTGCCACCTGCCAAAGGCCTGAAGTGTGCACTAC	7	+	17455283-17455332	7q12	PREDICTED: Rattus norvegicus RGD1561305 (predicted) (RGD1561305_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648578-S	ILMN_53473	LOC362480	XM_347058.2	XM_347058.2		362480	62648578	XM_347058.2	LOC362480	XP_347059.2	ILMN_1354849	0003870446	S	2127	GGTGTTACAATCCCAGCAGAAGGACGTGGCTCACTAGAAGGCAGGCACTG				5q12	PREDICTED: Rattus norvegicus similar to lipoxygenase homology domains 1 (LOC362480), mRNA.					
Rattus norvegicus	RefSeq	GI_62645874-S	ILMN_297307	UBOX5	NM_001033997.1	NM_001033997.1		296161	77404260	NM_001033997.1	Ubox5	NP_001029169.1	ILMN_1362885	0000580008	S	1481	CTACCTCAGAGCCGACTGCCAAGAAGATGAAAGGTGCCAGCGAACTGGGC	3	-	118226763-118226812	3q36	Rattus norvegicus U-box domain containing 5 (Ubox5), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]	The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ubox5	Ubox5
Rattus norvegicus	RefSeq	GI_62658964-S	ILMN_58417	RBM19_PREDICTED	XM_222200.4	XM_222200.4		304512	109496025	XM_222200.4	Rbm19_predicted	XP_222200.4	ILMN_1350236	0001780471	S	2696	AAAGAAGATGACAGGGACCGGCGCTCACAGGGGCTTCGGCTTTGTGGACT	12	-	37643969-37644018	12q16	PREDICTED: Rattus norvegicus RNA binding motif protein 19 (predicted) (Rbm19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653448-S	ILMN_279470	RGD1566311_PREDICTED	XM_001056130.1	XM_001056130.1		500963	109484454	XM_001056130.1	RGD1566311_predicted	XP_001056130.1	ILMN_1370852	0000130280	S	832	AACCCAATAGAAGAGCGGGTCTCTGGCGGTGCTTGCCTGCGTTTGTACTC				8q13	PREDICTED: Rattus norvegicus RGD1566311 (predicted) (RGD1566311_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718044-S	ILMN_271131	LOC301126	XR_007870.1	XR_007870.1		301126	109486614	XR_007870.1	LOC301126		ILMN_1364585	0005910286	S	3222	GTAGGCAGAAACTGCAGCCCCAGCCACCTCCTACTTGTGGCACTGCTAGC					PREDICTED: Rattus norvegicus similar to Scaffold attachment factor B2 (LOC301126), mRNA.					
Rattus norvegicus	RefSeq	GI_9506508-S	ILMN_267013	COX6C	NM_019360.1	NM_019360.1		54322	9506508	NM_019360.1	Cox6c	NP_062233.1	ILMN_1363585	0002450195	S	26	CCCATGATAGCAGAGGCAGAGGACATTGGCTACCATCAGTTCCGGTGCTC	7	-	71477535-71477564:71477565-71477584	7q22	Rattus norvegicus cytochrome c oxidase, subunit VIc (Cox6c), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2) [goid 5751] [evidence TAS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]	COVIc; COX-VIc	COVIc; COX-VIc
Rattus norvegicus	RefSeq	GI_62657292-S	ILMN_264941	COG1_PREDICTED	XM_001081639.1	XM_001081639.1		303652	109492144	XM_001081639.1	Cog1_predicted	XP_001081639.1	ILMN_1356901	0006290037	S	2939	GAGGAAGACGGCTCACCTGCACCTTCATTGTTCAAGCTCGCCTGGCTCTC				10q32.1	PREDICTED: Rattus norvegicus component of oligomeric golgi complex 1 (predicted) (Cog1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978676-S	ILMN_267529	COL2A1	NM_012929.1	NM_012929.1		25412	6978676	NM_012929.1	Col2a1	NP_037061.1	ILMN_1368467	0005720609	S	4185	CAATGATGTGGAGATGAGGGCCGAGGGCAACAGCAGGTTCACGTACACTG	7	-	136679968-136680017	7q36	Rattus norvegicus collagen, type II, alpha 1 (Col2a1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; A collagen homotrimer of alpha1(II) chains; type II collagen triple helices associate to form fibrils [goid 5585] [evidence TAS]; A collagen homotrimer of alpha1(II) chains; type II collagen triple helices associate to form fibrils [goid 5585] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; A homeostatic process involved in the maintenance of an internal equilibrium within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function [goid 1894] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans [goid 6029] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEP]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]	CG2A1A; COLLII	CG2A1A; COLLII
Rattus norvegicus	RefSeq	GI_62645809-S	ILMN_267510	RGD1564751_PREDICTED	XM_001081082.1	XM_001081082.1		311399	109470777	XM_001081082.1	RGD1564751_predicted	XP_001081082.1	ILMN_1373912	0006180039	S	1208	CTGCCAGCCTTTTTCTATCCCAACACAGAAGCGCAAGAGCTGGGACAGCA				3q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930511O11 (predicted) (RGD1564751_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643673-S	ILMN_270024	DCLK2	NM_001009691.2	NM_001009691.2		310698	57863767	NM_001009691.2	Dclk2	NP_001009691.2	ILMN_2040501	0003130379	A	3206	AGCGGGGACTGGGGCGCATGGTGCTCCTTGAATGTCCTGTGACCAATCTT	2	-	178793944-178793993	2q34	Rattus norvegicus doublecortin-like kinase 2 (Dclk2), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Dck2; RGD1308384	Dck2; RGD1308384
Rattus norvegicus	RefSeq	GI_57863767-A	ILMN_270024	DCLK2	NM_001009691.2	NM_001009691.2		310698	57863767	NM_001009691.2	Dclk2	NP_001009691.2	ILMN_1376761	0007040148	S	3359	GGACCCCGCAGTTCACTCTCACTGTTAGGTTTTGCCTTCTCCAGGTATCC	2	-	178793791-178793840	2q34	Rattus norvegicus doublecortin-like kinase 2 (Dclk2), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Dck2; RGD1308384	Dck2; RGD1308384
Rattus norvegicus	RefSeq	GI_62664343-S	ILMN_62622	SPINK5_PREDICTED	XM_341607.3	XM_341607.3		361319	109506548	XM_341607.3	Spink5_predicted	XP_341608.3	ILMN_1367406	0005550100	S	1670	ATGGGCGGCTCCCCTGCACCAAAAAGAATGACCCCATTGAGGGCCTGGAT	18	+	37609907-37609956	18q11	PREDICTED: Rattus norvegicus serine protease inhibitor, Kazal type 5 (predicted) (Spink5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664364-S	ILMN_62622	SPINK5_PREDICTED	XM_341607.3	XM_341607.3		361319	109506548	XM_341607.3	Spink5_predicted	XP_341608.3	ILMN_1363425	0003290195	S	2011	GCAGGGCAGAGTTCCGGTGGTGGGAACCAGAAAGCTAAGGATGAATGTGC	18	+	37615762-37615800:37616962-37616972	18q11	PREDICTED: Rattus norvegicus serine protease inhibitor, Kazal type 5 (predicted) (Spink5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645181-S	ILMN_284731	RGD1563531_PREDICTED	XR_007690.1	XR_007690.1		311112	109470032	XR_007690.1	RGD1563531_predicted		ILMN_1353807	0002810114	S	2479	AAGCCCCTGCCTTATGAAAGCCACAGCGTAACTCCGGGAAAATCCCCAGG				3q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5330408N05 gene (predicted) (RGD1563531_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15724385	ILMN_58277	DCM5	NM_147143.1	NM_147143.1		257653	22129746	NM_147143.1	Dcm5	NP_671484.1	ILMN_1530179	0000840739	S	527	TGAATGCTATCCACAGTGAAAGGATAAAATGACCATAGAGAAAATAATCA					Rattus norvegicus Dcm5 protein (Dcm5), mRNA.					
Rattus norvegicus	RefSeq	GI_62657511-S	ILMN_279969	WDR45L	NM_001039587.1	NM_001039587.1		360682	88759332	NM_001039587.1	Wdr45l	NP_001034676.1	ILMN_1372502	0005220086	S	942	TGGCAGCTACTACAAGTTCCTGTTCAGTCCTAAGGGTGAGTGTGTCCGGG	10	-	110559515-110559564	10q32.3	Rattus norvegicus Wdr45 like (Wdr45l), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	WIPI-3; RGD1305141; WDR45L	WIPI-3; RGD1305141; WDR45L
Rattus norvegicus	RefSeq	GI_62646820-S	ILMN_60068	LOC497783	XM_579509.1	XM_579509.1		497783	62646820	XM_579509.1	LOC497783	XP_579509.1	ILMN_1350623	0001690113	S	4139	GAACACATGACGGATAAGAGGCCCGCCAGCCCCCTTCTAAGAAACAGTAC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031517 (LOC497783), mRNA.					
Rattus norvegicus	RefSeq	GI_62638684-S	ILMN_61770	LOC308188	XM_217925.3	XM_217925.3		308188	62638684	XM_217925.3	LOC308188	XP_217925.3	ILMN_1372342	0005420632	S	1950	GGCTGCACAGCCCAGGCACAGCAAGAGGAAGAAGGTCAACTGTGCCTGGT					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC308188), mRNA.					
Rattus norvegicus	RefSeq	GI_62644792-I	ILMN_49183	ABO	XM_575098.1	XM_575098.1		65270	62644792	XM_575098.1	Abo	XP_575098.1	ILMN_1375823	0007040035	S	1217	GTCACTTGGCTTACCACACACTTGAGTCCTGGAGTGGCAACCATCTTCAG				3p13	PREDICTED: Rattus norvegicus ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (Abo), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEP]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-N-acetyl-alpha-D-galactosaminyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose [goid 4380] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648778-S	ILMN_63292	LOC297968	XM_216366.3	XM_216366.3		297968	62648778	XM_216366.3	LOC297968	XP_216366.2	ILMN_1362588	0004730725	S	712	GCGCCCATCTGTGAACCAGGTTACTTCAAGCTTTCGTCAGTGGCAACCAC				5q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10342 (predicted) (LOC297968), mRNA.					
Rattus norvegicus	RefSeq	GI_62647394-S	ILMN_64885	LOC500166	XM_575518.1	XM_575518.1		500166	62647394	XM_575518.1	LOC500166	XP_575518.1	ILMN_1350079	0004920411	S	368	TTTCCTCCCACAGTGATGCAGACCCTAACAAAAACGTCCTTGCTTGGAGC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC500166), mRNA.					
Rattus norvegicus	RefSeq	GI_57113776-S	ILMN_274358	V1RC1	NM_001008906.1	NM_001008906.1		494255	57113776	NM_001008906.1	V1rc1	NP_001008906.1	ILMN_1353391	0005890458	S	637	TATAGCATCAGCAGTCTGAGAGAGTCCCCTGAGAAAAGGGCCACCAAGAC	4	+	86103017-86103066	4q24	Rattus norvegicus vomeronasal 1 receptor, C1 (V1rc1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657073-S	ILMN_63936	RUNDC1_PREDICTED	XM_220992.4	XM_220992.4		303552	109489042	XM_220992.4	Rundc1_predicted	XP_220992.3	ILMN_1349914	0001190450	S	491	TGGGTGATGCTGCTGTGACCCCCAAACAGAGCCTTCTGACAGCCATCCAC	10	+	90462362-90462411	10q32.1	PREDICTED: Rattus norvegicus RUN domain containing 1 (predicted) (Rundc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646122-S	ILMN_301752	NCOA6	XM_001064189.1	XM_001064189.1		116464	109471141	XM_001064189.1	Ncoa6	XP_001064189.1	ILMN_1362092	0000460484	S	6231	TCCAAAACCCCCAGCCGAAGAAACTCTCGAACTGAGGAGCCAACTATGGC				3q42	PREDICTED: Rattus norvegicus nuclear receptor coactivator 6 (Ncoa6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS];  [goid 30374] [evidence ISS];  [goid 30374] [evidence IDA];  [goid 30374] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653837-S	ILMN_49940	HERC1_PREDICTED	XM_236362.3	XM_236362.3		315771	62653837	XM_236362.3	Herc1_predicted	XP_236362.3	ILMN_1373988	0000840563	S	14939	GCACCGGCCTTATGACAGTCTGCCTACCTCACAGACCTGCTTCTTCCAGC				8q24	PREDICTED: Rattus norvegicus hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 (predicted) (Herc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114281-S	ILMN_283547	ZNF292	NM_001008879.1	NM_001008879.1		50552	57114281	NM_001008879.1	Znf292	NP_001008879.1	ILMN_1363257	0004590014	S	6077	GTAGCAGTTCAAACCACCGAGGAGCACCCTGCATCCTTTGATTGGAGCTC	5	-	51440775-51440824	5q21	Rattus norvegicus zinc finger protein 292 (Znf292), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence NAS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]	Zn-15; Zfp292	Zn-15; Zfp292
Rattus norvegicus	RefSeq	GI_34935347-S	ILMN_281559	RGD1565486_PREDICTED	XM_001079014.1	XM_001079014.1		497865	109489694	XM_001079014.1	RGD1565486_predicted	XP_001079014.1	ILMN_2039552	0005560192	S	1841	CAAGAGGCTGAGAGGCGCAGGCAACCTCAAATAAAGCAAGAGCCAGAGTC				10q12	PREDICTED: Rattus norvegicus similar to RNA binding motif protein 25 (predicted) (RGD1565486_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655679-S	ILMN_281559	RGD1565486_PREDICTED	XM_001079014.1	XM_001079014.1		497865	109489694	XM_001079014.1	RGD1565486_predicted	XP_001079014.1	ILMN_1370656	0000430576	S	1361	CGATCAAGAGAAAAAAGTAGAGATCGTGAAAGGGAACGGGAACGGGAGCG				10q12	PREDICTED: Rattus norvegicus similar to RNA binding motif protein 25 (predicted) (RGD1565486_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661434-S	ILMN_64565	LOC290199	XM_224159.3	XM_224159.3		290199	62661434	XM_224159.3	LOC290199	XP_224159.1	ILMN_1369654	0005360181	S	431	GCACAGTTTAAGAGTGGTCCCCCTGCCACAGAAAGTCACATGCCAGATCG					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 5 (LOC290199), mRNA.					
Rattus norvegicus	RefSeq	GI_62644322-S	ILMN_289510	NOLA1	NM_001024306.1	NM_001024306.1		499709	66730308	NM_001024306.1	Nola1	NP_001019477.1	ILMN_1356633	0003850368	S	1003	TGCTGTGGCTGGCGTCTGTCTGGAGCAGTCTTGAGGGTGCCATTCTGTCA	2	-	227268074-227268123	2q43	Rattus norvegicus nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs) (Nola1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A complex composed of RNA of the small nucleolar RNA (snoRNA) and protein, found in the nucleolus of a eukaryotic cell. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type [goid 5732] [evidence IEA]	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649464-S	ILMN_52970	LOC500528	XM_575889.1	XM_575889.1		500528	62649464	XM_575889.1	LOC500528	XP_575889.1	ILMN_1371031	0000730121	S	1189	GGAACCCAAGTATGAAGGGGTGAAGGGACCATGTCAGGAAAATGAGGCCC				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ33084 (LOC500528), mRNA.					
Rattus norvegicus	RefSeq	GI_62664696-S	ILMN_55694	SALL3_PREDICTED	XM_344708.2	XM_344708.2		364910	62664696	XM_344708.2	Sall3_predicted	XP_344709.2	ILMN_1362731	0004070739	S	5405	GGAACCCTCACTCTTCTGGAACCGCAACTCTAAGGTGTTTTATCGGGGCC				18q12.3	PREDICTED: Rattus norvegicus sal-like 3 (Drosophila) (predicted) (Sall3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476044-S	ILMN_274720	CTSD	NM_134334.2	NM_134334.2		171293	42476044	NM_134334.2	Ctsd	NP_599161.2	ILMN_1358267	0000630600	S	1760	CCTGGCAAAGGCCTGAAGGTGAGCAGAAGGAGCAAGAGGACAGAAGCAAA	1	-	202619848-202619897	1q41	Rattus norvegicus cathepsin D (Ctsd), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm [goid 45] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation [goid 6914] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IMP]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62650966-S	ILMN_63297	LOC366673	XM_345692.2	XM_345692.2		366673	62650966	XM_345692.2	LOC366673	XP_345693.2	ILMN_1351312	0004200110	S	466	GAGCATTACTTCTGCAAGGCACTGAAAGCCTGAACCGAGCCACCCAAAGC					PREDICTED: Rattus norvegicus similar to vesicle transport through interaction with t-SNAREs 1B homolog (LOC366673), mRNA.					
Rattus norvegicus	RefSeq	GI_62644762-S	ILMN_288562	RGD1565022_PREDICTED	XM_001078134.1	XM_001078134.1		296580	109469612	XM_001078134.1	RGD1565022_predicted	XP_001078134.1	ILMN_1369216	0004070309	S	4888	AGCCCAAGCGGCCCACAGTGCCAAAGAAGACCCAGACTCGTAAGTGACCA				3p13	PREDICTED: Rattus norvegicus similar to calmodulin regulated spectrin-associated protein 1 (predicted) (RGD1565022_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465626-S	ILMN_296559	OBP2B	NM_173148.1	NM_173148.1		286933	27465626	NM_173148.1	Obp2b	NP_775171.1	ILMN_1372893	0003450364	S	649	GAGCTCCCGAACTCCAGACGACTTTCCTCACCTTCATGGATGGACTTCCC	3	+	3937378-3937427	3p13	Rattus norvegicus odorant binding protein 2B (Obp2b), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Ry2g12	Ry2g12
Rattus norvegicus	RefSeq	GI_62663333-S	ILMN_291094	IBRDC2_PREDICTED	XM_001057893.1	XM_001057893.1		364681	109505571	XM_001057893.1	Ibrdc2_predicted	XP_001057893.1	ILMN_1366789	0006130546	S	850	CCGTGCAGGAATAAGCTGGGCCACTCGAGAGCATCGGTAATGTGGAACCG				17p13	PREDICTED: Rattus norvegicus IBR domain containing 2 (predicted) (Ibrdc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_20302100-S	ILMN_287647	OBP1F	NM_138903.1	NM_138903.1		192267	20302100	NM_138903.1	Obp1f	NP_620258.1	ILMN_1369449	0004560113	S	463	GCTGGCTGAGGAGTATAATATTCCAAATGAGAATACCCAGCACTTGGTGC	X	-	63690838-63690887	Xq22	Rattus norvegicus odorant binding protein I f (Obp1f), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence IDA]; Interacting selectively with an odorant, any substance capable of stimulating the sense of smell [goid 5549] [evidence IEA]	Obp-1f	Obp-1f
Rattus norvegicus	RefSeq	GI_62647513-S	ILMN_70200	LOC502792	XM_578291.1	XM_578291.1		502792	62647513	XM_578291.1	LOC502792	XP_578291.1	ILMN_1362300	0002650528	S	721	CCAATTTGGCAGATGGAGTACATGGATCAGTGGCAGTGTACAAGGGTCAG				4q31	PREDICTED: Rattus norvegicus similar to Ig kappa chain (LOC502792), mRNA.					
Rattus norvegicus	RefSeq	GI_62663518-S	ILMN_267143	LOC361230	XM_001075466.1	XM_001075466.1		361230	109504814	XM_001075466.1	LOC361230	XP_001075466.1	ILMN_1370661	0005900086	S	268	AGTGCAGCAGTGGCTGGCATCTACAGAGTGGCTGGGAAGAACATGGCCCC	17	-	29025439-29025488	17p12	PREDICTED: Rattus norvegicus Ac1258 (LOC361230), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62654234-S	ILMN_265550	PCBP4_PREDICTED	XM_001071111.1	XM_001071111.1		363133	109485245	XM_001071111.1	Pcbp4_predicted	XP_001071111.1	ILMN_1363415	0005420463	S	1813	CCACTGATACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCCGGGGGG				8q32	PREDICTED: Rattus norvegicus poly(rC) binding protein 4 (predicted) (Pcbp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639260-S	ILMN_68958	LOC502304	XM_580244.1	XM_580244.1		502304	62639260	XM_580244.1	LOC502304	XP_580244.1	ILMN_1354775	0006400400	S	449	TCTCAGCTCCACTTCAGGCACAGATACTTTCCCAGGATCCACAGGGCGCC					PREDICTED: Rattus norvegicus LOC502304 (LOC502304), mRNA.					
Rattus norvegicus	RefSeq	GI_60678269-S	ILMN_265665	RCAN3	NM_001012746.1	NM_001012746.1		362627	60678269	NM_001012746.1	Rcan3	NP_001012764.1	ILMN_1354103	0002940452	S	525	CCCCCGTGGGGTGGAAGCAGAGTGAAGATGCCACGCCAGTGATCAACTAT	5	-	154210653-154210702	5q36	Rattus norvegicus RCAN family member 3 (Rcan3), mRNA.		A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]	Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence IEA]; Interacting selectively with troponin I, the inhibitory subunit of the troponin complex [goid 31013] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_23097351-S	ILMN_283059	SPINK1	NM_152936.1	NM_152936.1		266602	23097351	NM_152936.1	Spink1	NP_690919.1	ILMN_1371222	0003520441	S	178	GCCCCAGGGATTATGATCCTGTGTGTGGTACTGACGGAAAAACTTACGCC	18	-	37095736-37095785	18p11	Rattus norvegicus serine peptidase inhibitor, Kazal type 1 (Spink1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]	Psti	Psti
Rattus norvegicus	RefSeq	GI_14010890-S	ILMN_265467	SDCBP	NM_031986.1	NM_031986.1		83841	14010890	NM_031986.1	Sdcbp	NP_114192.1	ILMN_1372999	0003830563	S	1651	GCCCTGAGCAGCTTACTGGTGTCGCAGAGCTGCCTAGCTGTACCAAGATT	5	+	19848815-19848864	5q12	Rattus norvegicus syndecan binding protein (Sdcbp), mRNA.	A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3 [goid 5895] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with the interleukin-5 receptor [goid 5137] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals [goid 42043] [evidence NAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]	mda-9; TACIP18	mda-9; TACIP18
Rattus norvegicus	RefSeq	GI_62657522-S	ILMN_48032	IGSF7	XM_340957.2	XM_340957.2		287813	62657522	XM_340957.2	Igsf7	XP_340958.2	ILMN_1349716	0004010154	S	366	GTCCCAGTCACAGGTTCAAGCCTTTGGAGCATTACAACAGTCCCAGAGAC					PREDICTED: Rattus norvegicus immunoglobulin superfamily, member 7 (Igsf7), mRNA.					
Rattus norvegicus	RefSeq	GI_62198214-S	ILMN_49704	C4BPB	NM_016995.2	NM_016995.2		24236	62198214	NM_016995.2	C4bpb	NP_058691.2	ILMN_1363829	0001190400	S	842	CCTACCTGTGAGTCCATCCAGGAACCCCCCAAATCAGCTGAACAGAGTGC	13	-	43598913-43598962	13q13	Rattus norvegicus complement component 4 binding protein, beta (C4bpb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]		C4bp-ps1; MGC108727	C4bp-ps1; MGC108727
Rattus norvegicus	RefSeq	GI_62645310-S	ILMN_52615	RGD1562244_PREDICTED	XM_230024.4	XM_230024.4		295678	109468339	XM_230024.4	RGD1562244_predicted	XP_230024.4	ILMN_1349091	0002230707	S	2994	CCCTGAAGACACTTTGTCTGTGGGGAAGGAGGGCTAAAGATGAAGGTATG	3	-	59872728-59872777	3q23	PREDICTED: Rattus norvegicus similar to SEC14 and spectrin domains 1 (predicted) (RGD1562244_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663725-S	ILMN_65191	LOC289288	XM_222975.3	XM_222975.3		289288	62663725	XM_222975.3	LOC289288	XP_222975.3	ILMN_1353599	0001190575	S	792	ATGGAGTGTAGTCCTGAAGAACAGCAGCCTCAGCTCCATGGCTTTTAAGC				17q12.1	PREDICTED: Rattus norvegicus similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1) (LOC289288), mRNA.					
Rattus norvegicus	RefSeq	GI_62662692-S	ILMN_263861	FRG1_PREDICTED	XM_001064153.1	XM_001064153.1		361156	109504226	XM_001064153.1	Frg1_predicted	XP_001064153.1	ILMN_1365715	0004610463	S	61	CCCGGACCTACGGGATCTCTACCGGCGGTTGCTATTTCAGGGTGCCGAAC					PREDICTED: Rattus norvegicus FSHD region gene 1 (predicted) (Frg1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649009-S	ILMN_288417	CTNNAL1_PREDICTED	XM_001059679.1	XM_001059679.1		298019	109476536	XM_001059679.1	Ctnnal1_predicted	XP_001059679.1	ILMN_1349629	0001660039	S	2304	GGGTCTCTGCGACAAACAAAGATGCCATGGATGGTCAAACCTGAGCAGCC				5q24	PREDICTED: Rattus norvegicus catenin (cadherin associated protein), alpha-like 1 (predicted) (Ctnnal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642374-S	ILMN_61325	LOC499360	XM_574673.1	XM_574673.1		499360	62642374	XM_574673.1	LOC499360	XP_574673.1	ILMN_1368135	0004150037	S	3967	AATCCAGAACTGTCGGCCTACTCAGAGCCAAACCAGCCCTGACACGAGTG				1q54	PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 6 (LOC499360), mRNA.					
Rattus norvegicus	RefSeq	GI_62078730-S	ILMN_266583	RGD1307325	NM_001014001.1	NM_001014001.1		306469	62078730	NM_001014001.1	RGD1307325	NP_001014023.1	ILMN_1371101	0003520114	S	1847	CCAAGGCCTTAGCGTGTAGATGTCTGTACACCGGCACAGCGAATGAGCTC	16	-	49366794-49366843	16q11	Rattus norvegicus similar to RIKEN cDNA 4933411K20 (RGD1307325), mRNA.					
Rattus norvegicus	RefSeq	GI_34882720-S	ILMN_60433	LOC367381	XM_576810.2	XM_576810.2		367381	109513633	XM_576810.2	LOC367381	XP_576810.2	ILMN_1360291	0002640114	S	119	AGAGACCGCACCAGGTCAGAGGGAAGCTGACCCCCTCTCTAGTGAAACAG	Un|NW_047892.1	+	196409-196458		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC367381), mRNA.					
Rattus norvegicus	RefSeq	GI_34882722-S	ILMN_60433	LOC367381	XM_576810.2	XM_576810.2		367381	109513633	XM_576810.2	LOC367381	XP_576810.2	ILMN_1353963	0006110154	S	621	CTCTGTGAAGAGGCCGGAATGAACATCTGTGCCCCCAGTGCCACGCAACA	Un|NW_047892.1	+	200104-200153		PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC367381), mRNA.					
Rattus norvegicus	RefSeq	GI_62655618-S	ILMN_63048	LOC497855	XM_573036.1	XM_573036.1		497855	62655618	XM_573036.1	LOC497855	XP_573036.1	ILMN_1355273	0001090176	S	15	CACCTCATGTCCCAGATCCCAGACAGATCCCAGAAGGTTGCAGCACTGAG					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC497855), mRNA.					
Rattus norvegicus	RefSeq	GI_53850645-S	ILMN_281087	TXNDC2	NM_001005559.1	NM_001005559.1		316777	53850645	NM_001005559.1	Txndc2	NP_001005559.1	ILMN_1354899	0002760092	S	1485	CTTGGAGGTGGATACTGAGGACTGTGAACAGCTGGTGCAAGACTGTGAGG	9	-	104391767-104391816	9q37	Rattus norvegicus thioredoxin domain containing 2 (spermatozoa) (Txndc2), mRNA.	Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile [goid 1520] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]	Oxidation of two organic sulfhydryl groups (thiols) by a disulfide compound to form a disulfide bond [goid 6467] [evidence IEA]; Oxidation of two organic sulfhydryl groups (thiols) by a disulfide compound to form a disulfide bond [goid 6467] [evidence ISS]; Oxidation of two organic sulfhydryl groups (thiols) by a disulfide compound to form a disulfide bond [goid 6467] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]	Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+ [goid 4791] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_9507044-S	ILMN_267043	RGS5	NM_019341.1	NM_019341.1		54294	9507044	NM_019341.1	Rgs5	NP_062214.1	ILMN_1370034	0003520039	S	116	CATATAATGAGAAGCCAGAGAAGCCTGCCAAGGCGCACAAGCCCTCGCTG	13	+	85465777-85465816:85471488-85471497	13q24	Rattus norvegicus regulator of G-protein signaling 5 (Rgs5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648598-S	ILMN_293843	FAM110B	NM_001024341.1	NM_001024341.1		500400	66730466	NM_001024341.1	Fam110b	NP_001019512.1	ILMN_1366877	0004540484	S	1350	GTCACAGAAGGTGTCCCACGTGTAAGAGGCGCAGTGGTGAAAAGGAGGGG	5	+	19261833-19261857:19261858-19261882	5q12	Rattus norvegicus family with sequence similarity 110, member B (Fam110b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62641142-S	ILMN_48851	SH2BP1	XM_238127.4	XM_238127.4		293184	109459264	XM_238127.4	Sh2bp1	XP_238127.4	ILMN_1373470	0006290017	S	4302	ACACTGGGGAGGGTGAGGGGTGGAGAGTGTTTTTCTGTTGTTAGAGTGGG	1	+	168814874-168814923	1q33	PREDICTED: Rattus norvegicus SH2 domain binding protein 1 (tetratricopeptide repeat containing) (Sh2bp1), mRNA.					
Rattus norvegicus	RefSeq	GI_62666951-S	ILMN_265297	RGD1565058_PREDICTED	XM_001068189.1	XM_001068189.1		501587	109512032	XM_001068189.1	RGD1565058_predicted	XP_001068189.1	ILMN_1361275	0005700278	S	354	TGACCACTACTAGCACTGAAACGGAAGCCGAGCCAACTAGTTCAGACAGC				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700019M22 (predicted) (RGD1565058_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648427-S	ILMN_68039	LOC502910	XM_578412.1	XM_578412.1		502910	62648427	XM_578412.1	LOC502910	XP_578412.1	ILMN_1374901	0004200079	S	891	CCTGCGGGCTGTGGGTTGTGGGTTGAAGTGAGTATCTGGATGACCTATAC					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG08601 (LOC502910), mRNA.					
Rattus norvegicus	RefSeq	GI_40786492-S	ILMN_302562	PANX3	NM_199398.1	NM_199398.1		315567	40786492	NM_199398.1	Panx3	NP_955430.1	ILMN_1359815	0002680129	S	2199	GCCAACTAGTGAAGGCCAGTGGGTTAGACCTGATTTCAATGCCTGGGACC	8	-	38902453-38902502	8q21	Rattus norvegicus pannexin 3 (Panx3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IMP]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IMP]			
Rattus norvegicus	RefSeq	GI_57222329-S	ILMN_273402	LY49I3	NM_001009499.1	NM_001009499.1		494208	57222329	NM_001009499.1	Ly49i3	NP_001009499.1	ILMN_1355083	0006770458	S	139	GTGATAGCTCTTGCAATCCTCTGTTCAGTTCTGATGGTAACTGTTGCAGC	4	-	168248620-168248669	4q42	Rattus norvegicus immunoreceptor Ly49i3 (Ly49i3), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62646031-S	ILMN_291011	LOC681886	XM_001056831.1	XM_001056831.1		681886	109471013	XM_001056831.1	LOC681886	XP_001056831.1	ILMN_1351758	0006290494	S	3247	TTGGTTGTGGCTAAGCATGGGAGGGCTTGAAGGGGTGGCAGCTCTGTGAG					PREDICTED: Rattus norvegicus similar to acetyl-CoA synthetase 2-like (LOC681886), mRNA.					
Rattus norvegicus	RefSeq	GI_62640790-S	ILMN_54338	RGD1309666_PREDICTED	XM_344915.3	XM_344915.3		365297	109458984	XM_344915.3	RGD1309666_predicted	XP_344916.3	ILMN_1360800	0002470435	S	1648	CAGCAGAGCCACCGAGAACCACAGGACTCGTTCCACTTGAGACCAAACCC	1	-	136764669-136764718	1q31	PREDICTED: Rattus norvegicus similar to FLJ00364 protein (predicted) (RGD1309666_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662449	ILMN_289071	RFXANK	NM_001013136.1	NM_001013136.1		306353	61557060	NM_001013136.1	Rfxank	NP_001013154.1	ILMN_1650953	0002630332	S	988	GTGGACATCAACATCTATGACTGGAATGGGGGGACACCACTGCTCTACGC	16	+	19770749-19770772:19771148-19771173	16p14	Rattus norvegicus regulatory factor X-associated ankyrin-containing protein (Rfxank), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62654954-S	ILMN_64730	LOC316353	XM_237081.3	XM_237081.3		316353	62654954	XM_237081.3	LOC316353	XP_237081.3	ILMN_1355308	0001660347	S	2493	GAATCCGTGTGCGTGGTCACTCTGTTGTTAGGACTCATCAGGCTGTGTGG				9q21	PREDICTED: Rattus norvegicus similar to cellular repressor of E1A-stimulated genes 2 (LOC316353), mRNA.					
Rattus norvegicus	RefSeq	GI_24475745-S	ILMN_286667	PAFAH1B3	NM_053654.2	NM_053654.2		114113	24475745	NM_053654.2	Pafah1b3	NP_446106.1	ILMN_1360039	0006550086	S	555	AGCTGGCTACCCCCGAGCGCACTTCTTAGATGCAGACCCTGGCTTTGTGC	1	-	80570363-80570412	1q21	Rattus norvegicus platelet-activating factor acetylhydrolase, isoform 1b, alpha1 subunit (Pafah1b3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]; Catalysis of the reaction: 1-radyl-2-acyl-sn-glycero-3-phospholipid + 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine = 1-alkyl-2-lyso-sn-glycero-3-phosphocholine + 1-radyl-2-acetyl-sn-glycero-3-phospholipid [goid 47179] [evidence TAS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664422-S	ILMN_263708	RGD1565619_PREDICTED	XM_001055603.1	XM_001055603.1		307302	109507322	XM_001055603.1	RGD1565619_predicted	XP_001055603.1	ILMN_1359288	0001410494	S	4281	CTGAGCAGTAAATCACAGAAAGGCTGCTGGGTCTGAGGGTGGTGAGACAG				18q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ36090 (predicted) (RGD1565619_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656022-S	ILMN_67343	RGD1562836_PREDICTED	XM_220372.4	XM_220372.4		303100	109488023	XM_220372.4	RGD1562836_predicted	XP_220372.4	ILMN_1365502	0000110176	S	2335	TGAGCCAGGCCATTAGAAGAGCTTTTTCTTGGGTGCCCGCTGTGTGCGGC	10	+	35785365-35785414	10q22	PREDICTED: Rattus norvegicus similar to N-acetylglucosaminyltrasnferase IVb (predicted) (RGD1562836_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656372-S	ILMN_62960	RGD1565881_PREDICTED	XM_573132.2	XM_573132.2		497944	109488413	XM_573132.2	RGD1565881_predicted	XP_573132.1	ILMN_1351181	0003170372	S	1581	CTCCCACCTCCTCCGGCACCAGAGTGTTCACTGTAGCGAGTGATCTGCAA	10	+	57666223-57666265:57666266-57666272	10q24	PREDICTED: Rattus norvegicus similar to expressed sequence AI854635 (predicted) (RGD1565881_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664379-S	ILMN_47771	LOC498859	XM_574145.1	XM_574145.1		498859	62664379	XM_574145.1	LOC498859	XP_574145.1	ILMN_1365439	0005720162	S	615	TCGCTCCTGGTTGACGGAGATGTGATTTCTCGAAGAGTCTCCATGGGGTC					PREDICTED: Rattus norvegicus LOC498859 (LOC498859), mRNA.					
Rattus norvegicus	RefSeq	GI_62644836-S	ILMN_262787	COQ4	NM_001031662.1	NM_001031662.1		366013	72255544	NM_001031662.1	Coq4	NP_001026832.1	ILMN_1355868	0001170373	S	1025	GAGAGCAGTACGTGTGCCTGGAGCAGCCATCTTGGATCAGTCGGGATTGC	3	+	8783548-8783597	3p12	Rattus norvegicus coenzyme Q4 homolog (S. cerevisiae) (Coq4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]		MGC116264	MGC116264
Rattus norvegicus	RefSeq	GI_62639681-S	ILMN_273566	MED25_PREDICTED	XM_001080653.1	XM_001080653.1		292889	109461899	XM_001080653.1	Med25_predicted	XP_001080653.1	ILMN_1362447	0001340471	S	2346	GGACGACATCCTCATGGACCTCATCTGAACCCAACACCCAATAAAGTTCC				1q22	PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 25 homolog (yeast) (predicted) (Med25_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648574-S	ILMN_288748	SOX17_PREDICTED	XM_001068621.1	XM_001068621.1		312936	109476072	XM_001068621.1	Sox17_predicted	XP_001068621.1	ILMN_1359017	0001500110	S	1778	TGCCTCGAGGGGTTTGCTCCCCACCATCACTGTCCAGTTTTAGCCAGTTT				5q12	PREDICTED: Rattus norvegicus SRY-box containing gene 17 (predicted) (Sox17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667471-S	ILMN_60292	RGD1564295_PREDICTED	XM_229141.3	XM_229141.3		317585	109511208	XM_229141.3	RGD1564295_predicted	XP_229141.3	ILMN_1356641	0001170463	S	338	AACAACATCCAAACTGGACTGTGGCGCAGGTGGCCAAGGCTGCAGGGAGG	X	+	137396958-137397007	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (predicted) (RGD1564295_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647535	ILMN_48461	LOC502804	XM_578303.1	XM_578303.1		502804	62647535	XM_578303.1	LOC502804	XP_578303.1	ILMN_1649907	0001400592	S	84	TACCCATTTGCATTGGTACCTGCAGAAGCCAGGACAGTTACCTCAGCTTC					PREDICTED: Rattus norvegicus similar to rearranged immunoglobulin kappa chain variable region (LOC502804), mRNA.					
Rattus norvegicus	RefSeq	GI_11067400-S	ILMN_275510	CAMK2N2	NM_021678.1	NM_021678.1		59314	11067400	NM_021678.1	Camk2n2	NP_067710.1	ILMN_1372528	0005390113	S	257	GTGATCGAGGATGACCGGATAGACGACGTGCTGAAGGGGATGGGGGAGAA				11q23	Rattus norvegicus calcium/calmodulin-dependent protein kinase II inhibitor 2 (Camk2n2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence TAS]	Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence IEA]; Stops, prevents or reduces the activity of a calcium-dependent protein kinase [goid 8427] [evidence IMP]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_6981287-S	ILMN_286760	SLC11A2	NM_013173.1	NM_013173.1		25715	6981287	NM_013173.1	Slc11a2	NP_037305.1	ILMN_1368699	0002450500	S	4121	GGCGAGCCATCTTGTACGTTCTCACTTGGTCCTCGTTCTTCTGCGACCTG	7	-	139094654-139094703	7q36	Rattus norvegicus solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 (Slc11a2), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IDA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of transition metal ions into, out of, within or between cells. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver [goid 41] [evidence IDA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cobalt (Co) ions into, out of, within or between cells [goid 6824] [evidence IEA]; The directed movement of cobalt (Co) ions into, out of, within or between cells [goid 6824] [evidence ISS]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEP]; The directed movement of ferrous iron (Fe(II) or Fe2+) ions into, out of, within or between cells [goid 15684] [evidence IMP]; The directed movement of cobalt (Co) ions into, out of, within or between cells [goid 6824] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cobalt (Co) ions into, out of, within or between cells [goid 6824] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other [goid 5375] [evidence IDA]; Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other [goid 5381] [evidence IDA]; Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other [goid 5381] [evidence ISS]; Catalysis of the transfer of manganese (Mn) ions from one side of a membrane to the other [goid 5384] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IDA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Catalysis of the transfer of cadmium (Cd) ions from one side of a membrane to the other [goid 15086] [evidence IDA]; Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence IDA]; Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence IEA]; Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence ISS]; Catalysis of the transfer of ferrous iron (Fe(II) or Fe2+) ions from one side of a membrane to the other [goid 15093] [evidence IMP]; Catalysis of the transfer of lead (Pb) ions from one side of a membrane to the other [goid 15094] [evidence IDA]; Catalysis of the transfer of nickel (Ni) ions from one side of a membrane to the other [goid 15099] [evidence IDA]; Interacting selectively with nickel (Ni) ions [goid 16151] [evidence IDA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IDA]; Interacting selectively with cadmium (Cd) ions [goid 46870] [evidence IDA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IDA]; Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence IEA]	Dmt1; Nramp2	Dmt1; Nramp2
Rattus norvegicus	RefSeq	GI_62651106-S	ILMN_70208	LOC500696	XM_576078.1	XM_576078.1		500696	62651106	XM_576078.1	LOC500696	XP_576078.1	ILMN_1351942	0002030167	S	2016	TCTACCAAGACGTGAAGGAATGAACGCTGCCAACCCCTGTTCCCTTTGAC				6q31	PREDICTED: Rattus norvegicus similar to WW domain binding protein 11 (predicted) (LOC500696), mRNA.					
Rattus norvegicus	RefSeq	GI_62656712-S	ILMN_64644	PPM1D_PREDICTED	XM_213418.4	XM_213418.4		287585	109488725	XM_213418.4	Ppm1d_predicted	XP_213418.4	ILMN_1365461	0006770021	S	2826	CATCTGGTGTGCTTACTGAAATCTCTGGCACAGATGGCGGTGTGTTTGCC	10	+	73611803-73611852	10q26	PREDICTED: Rattus norvegicus protein phosphatase 1D magnesium-dependent, delta isoform (predicted) (Ppm1d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978468-S	ILMN_295245	MLLT4	NM_013217.1	NM_013217.1		26955	6978468	NM_013217.1	Mllt4	NP_037349.1	ILMN_1359100	0001940441	S	5592	CGGGATCTGCTGGCACAACTGCTGGAACTTATGATGCTCCTCGGGACACA				1q12	Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 (Mllt4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments [goid 5912] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Mllt4	Mllt4
Rattus norvegicus	RefSeq	GI_62717726-S	ILMN_67487	LOC302157	XM_229736.3	XM_229736.3		302157	62717726	XM_229736.3	LOC302157	XP_229736.3	ILMN_1350469	0000070372	S	1499	CCATGGCCTGGGAACCCCTTCAAAGTCCCCTAATATGATTATAACCCCGG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC302157), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647052-S	ILMN_48276	LOC502731	XM_578230.1	XM_578230.1		502731	62647052	XM_578230.1	LOC502731	XP_578230.1	ILMN_1373696	0004480019	S	5049	AATGGCGGTGAATGTGTAGCTCCCAGCATGTGCCATTGCCCCTCCACCTG				4q21	PREDICTED: Rattus norvegicus similar to Neurogenic locus notch homolog protein 1 precursor (Notch 1) (Motch A) (mT14) (p300) (LOC502731), mRNA.					
Rattus norvegicus	RefSeq	GI_62658901-S	ILMN_268982	HIP1R	XM_001072438.1	XM_001072438.1		81917	109495873	XM_001072438.1	Hip1r	XP_001072438.1	ILMN_1369843	0002650577	S	3210	TGGGGCCACTAAGAAGCCACCTCTTGCCCAGAAACCCAGCATAGCCCCCA	12	-	33715503-33715552	12q15	PREDICTED: Rattus norvegicus huntingtin interacting protein 1 related (Hip1r), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]	The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_58865787-A	ILMN_263606	GALNT14	NM_001012109.1	NM_001012109.1		313878	58865787	NM_001012109.1	Galnt14	NP_001012109.1	ILMN_1376873	0005570300	S	2000	GGAGCAACTGTCTCAGGGAAGATGGAGGAAAAGGTCACAAACCAGCAGGG	6	+	22007291-22007340	6q13	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) (Galnt14), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865789-A	ILMN_264091	ZNF513	NM_001012110.1	NM_001012110.1		313913	58865789	NM_001012110.1	Znf513	NP_001012110.1	ILMN_1376269	0005690041	S	1648	ACCACAGGCCACTGGGACAACTACAAGCGTCATCAGAAGGTGCATGGCCA	6	+	25153007-25153056	6q14	Rattus norvegicus zinc finger protein 513 (Znf513), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC105911	MGC105911
Rattus norvegicus	RefSeq	GI_62654170-S	ILMN_262841	LOC685758	XM_001065156.1	XM_001065156.1		685758	109483857	XM_001065156.1	LOC685758	XP_001065156.1	ILMN_1353812	0002320239	S	797	CCCACCACCCCTTTCTGTGGGCCTGCATGGAGAACTTTGTTGAGCACTAC	8	+	104490739-104490788	8q31	PREDICTED: Rattus norvegicus similar to Alpha-1,4-N-acetylglucosaminyltransferase (Alpha4GnT) (LOC685758), mRNA.					
Rattus norvegicus	RefSeq	GI_47577666-S	ILMN_275044	OLR560	NM_001000325.1	NM_001000325.1		295801	47577666	NM_001000325.1	Olr560	NP_001000325.1	ILMN_1357856	0001690121	S	712	CTAAAACTGGCATCAACTGGAGGGAGGTCTAAAGCCTTTTCCACCTGCTC	3	+	71030252-71030301	3q24	Rattus norvegicus olfactory receptor 560 (Olr560), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	ratchr3-70925913-70926893_ORF; Olr560	ratchr3-70925913-70926893_ORF; Olr560
Rattus norvegicus	RefSeq	GI_62655408-S	ILMN_68056	KIF1A_PREDICTED	XM_343630.2	XM_343630.2		363288	62655408	XM_343630.2	Kif1a_predicted	XP_343631.2	ILMN_1349972	0004780403	S	6269	TGCTCTGGTGGGAAGTTCGGAATGCCAGGAAGGAGGGAAGGAGCGAGTTG				9q36	PREDICTED: Rattus norvegicus kinesin family member 1A (predicted) (Kif1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393983-S	ILMN_283400	PLCG2	NM_017168.1	NM_017168.1		29337	8393983	NM_017168.1	Plcg2	NP_058864.1	ILMN_1367941	0002230717	S	4012	GCACATGCGTGCGGTGTTCATGAGCGCATCCGGATACAGGCGAGCCTTAT				19q12	Rattus norvegicus phospholipase C, gamma 2 (Plcg2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]	The process whereby a B cell in the spleen acquires the specialized features of a follicular B cell. Follicular B cells are major population of mature recirculating B cells in the spleen and are located in the B-cell follicle region [goid 2316] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; A process that initiates the activity of an inactive store-operated calcium channel [goid 32237] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; The chemical reactions and pathways resulting in the formation of inositol trisphosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached [goid 32959] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43069] [evidence ISS]	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652941-S	ILMN_48960	KIF21A_PREDICTED	XM_217022.4	XM_217022.4		300158	109481197	XM_217022.4	Kif21a_predicted	XP_217022.4	ILMN_1350652	0001780735	S	5110	GTGCCAGGCCACCCGATTTTGCTTAGTGGCTGCAGAGGGGGCATTCTGAA	7	-	129339389-129339438	7q35	PREDICTED: Rattus norvegicus kinesin family member 21A (predicted) (Kif21a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18376838-S	ILMN_265958	DDIT4	NM_080906.1	NM_080906.1		140942	18376838	NM_080906.1	Ddit4	NP_543182.1	ILMN_1357747	0004070341	S	1368	GGGGGGATCGGAGCTTCACTACTGACCTGTTCGAGGCAGCTATCTTACAG				20q11	Rattus norvegicus DNA-damage-inducible transcript 4 (Ddit4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IDA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]		Rtp801	Rtp801
Rattus norvegicus	RefSeq	GI_54792126-S	ILMN_302588	ATP5B	NM_134364.1	NM_134364.1		171374	54792126	NM_134364.1	Atp5b	NP_599191.1	ILMN_1350324	0006400563	S	1508	GCAGGTGACTATGACCATCTCCCGGAACAAGCCTTCTACATGGTGGGACC	7	+	1382427-1382430:1382981-1383026	7q11	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (Atp5b), nuclear gene encoding mitochondrial protein, mRNA.	The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled [goid 275] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IDA]; A proton-transporting ATP synthase complex found in the mitochondrial membrane [goid 5753] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IEA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]; The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled [goid 45261] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate [goid 6172] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IDA]; The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction [goid 6933] [evidence ISS]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence ISS]; The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator [goid 46034] [evidence IDA]; Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion [goid 51453] [evidence IEA]; Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion [goid 51453] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism [goid 8553] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IMP]; Combining with a lipoprotein to initiate a change in cell activity. A lipoprotein is any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids; the lipid may be triacylglycerol, cholesterol, or phospholipid, or a combination of these [goid 30228] [evidence IDA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence IEA]; Interacting selectively with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation [goid 42288] [evidence ISS]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758745-S	ILMN_281367	CNTN4	NM_053879.1	NM_053879.1		116658	16758745	NM_053879.1	Cntn4	NP_446331.1	ILMN_1349434	0001240167	S	4548	CTCTCTAAACTATCAGTAGTCCATGTGCATTGGACCTTGATGTCTCTCCC				4q41	Rattus norvegicus contactin 4 (Cntn4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Axcam; Big-2	Axcam; Big-2
Rattus norvegicus	RefSeq	GI_62659154-S	ILMN_49214	SERPINB12_PREDICTED	XM_222499.4	XM_222499.4		304692	109497735	XM_222499.4	Serpinb12_predicted	XP_222499.4	ILMN_1369095	0006770348	S	1311	TGCCAACCGCCCATTCCTCTTTTTCATCCGACACAATGGAACCCAGAGTC	13	+	13136998-13137047	13p13	PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12 (predicted) (Serpinb12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659870-S	ILMN_52816	RGD1559740_PREDICTED	XM_213960.4	XM_213960.4		289324	109498282	XM_213960.4	RGD1559740_predicted	XP_213960.1	ILMN_1373944	0003170037	S	508	CACTGCACAATCGAGGAACCAGAGACTAAAACCACCCTTAGGACCGTGAC	13	+	96939300-96939349	13q26	PREDICTED: Rattus norvegicus similar to Protein HSPC163 (predicted) (RGD1559740_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660625-I	ILMN_64034	TBC1D14_PREDICTED	XM_573632.1	XM_573632.1		360956	62660625	XM_573632.1	Tbc1d14_predicted	XP_573632.1	ILMN_1376095	0002450450	S	3011	GTTGGAGACACTGAGAGAGAAGGCGGTGGACCTCAACCTAGGCTCATGGA				14q21	PREDICTED: Rattus norvegicus TBC1 domain family, member 14 (predicted) (Tbc1d14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19745173-S	ILMN_294233	SIAH2	NM_134457.1	NM_134457.1		140593	19745173	NM_134457.1	Siah2	NP_604452.1	ILMN_1350607	0005860402	S	1797	ACGGGGACACAACTCCTGGGGCTTGCCTGCTCTTGGGTTCTCAGAGTTCT	2	-	148022824-148022873	2q31	Rattus norvegicus seven in absentia 2 (Siah2), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the frequency, rate or extent of the addition of ubiquitin moieties to a protein [goid 31396] [evidence IDA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27730534	ILMN_271052	FPR-RS3_PREDICTED	XM_001058832.1	XM_001058832.1		292419	109460910	XM_001058832.1	Fpr-rs3_predicted	XP_001058832.1	ILMN_1649791	0000050253	S	832	TTGCTGAACCCAGCAAGCACACTGGCCTCCTTCAACAGCTGTCTCAACCC				1q12	PREDICTED: Rattus norvegicus formyl peptide receptor, related sequence 3 (predicted) (Fpr-rs3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665740-S	ILMN_63769	LOC499408	XM_579962.1	XM_579962.1		499408	62665740	XM_579962.1	LOC499408	XP_579962.1	ILMN_1366937	0005220053	S	448	CCCCCAGCATTCCTGGAAGTTATCTGACCTTGGGCAAGTGGGGCTTACAG					PREDICTED: Rattus norvegicus LOC499408 (LOC499408), mRNA.					
Rattus norvegicus	RefSeq	GI_47576582-S	ILMN_269254	OLR867	NM_001000412.1	NM_001000412.1		298476	47576582	NM_001000412.1	Olr867	NP_001000412.1	ILMN_2040291	0004250138	S	277	AAGACCATTTCCTTTGCTGGCTGCTGGATGCAGATGTATGTGTTTGGGGC	5	-	139409724-139409773	5q36	Rattus norvegicus olfactory receptor 867 (Olr867), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr867	Olr867
Rattus norvegicus	RefSeq	GI_62664786-S	ILMN_61736	RGD1564126_PREDICTED	XM_226217.4	XM_226217.4		291827	109507719	XM_226217.4	RGD1564126_predicted	XP_226217.3	ILMN_1349798	0006040019	S	242	CGGCAAACACCTTCCCCATTACAGGCCTCGCTGAGACAAAGAAGGTGACC	19	-	2443298-2443347	19p14	PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (predicted) (RGD1564126_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50356002-S	ILMN_301040	SCP2	NM_138508.4	NM_138508.4		25541	50356002	NM_138508.4	Scp2	NP_612517.2	ILMN_1365331	0003850398	S	2002	CGTTCGTGTTGGACACTCGGTGTGACAGTTTCCCCTTAGAGGGACTGGAG	5	-	129153354-129153403	5q35	Rattus norvegicus sterol carrier protein 2 (Scp2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [pmid 14561759] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 5498] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA + propanoyl-CoA = CoA + 3alpha,7alpha,12alpha-trihydroxy-24-oxo-5beta-cholestanoyl-CoA [goid 33814] [evidence IEA]	NSLIPTR; SCPx	NSLIPTR; SCPx
Rattus norvegicus	RefSeq	GI_62659816-S	ILMN_47850	LOC501870	XM_577287.1	XM_577287.1		501870	62659816	XM_577287.1	LOC501870	XP_577287.1	ILMN_1369737	0006040048	S	2874	GCAGTTGCGTCCCTGGGTGGTGTAGAGGCAGTGTGTCTGTGTCCAGGAAT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (Cell surface heparin binding protein HIP) (LOC501870), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645452-S	ILMN_59703	LOC499844	XM_580026.1	XM_580026.1		499844	62645452	XM_580026.1	LOC499844	XP_580026.1	ILMN_1352781	0004670093	S	19	GTCATTCTCGAAGACATATTCACAACAGTATGACGATATTCTTTGCTCCC					PREDICTED: Rattus norvegicus LOC499844 (LOC499844), mRNA.					
Rattus norvegicus	RefSeq	GI_34851798-S	ILMN_66547	LOC361417	XM_346974.1	XM_346974.1		361417	34851798	XM_346974.1	LOC361417	XP_346975.1	ILMN_1352516	0001500044	S	483	CACACCTGTGGCCTGAGTGCAATCCTGGTGAGCTTCATGGTGGAAGCAGA					PREDICTED: Rattus norvegicus hypothetical LOC361417 (LOC361417), mRNA.					
Rattus norvegicus	RefSeq	GI_8392916-S	ILMN_294865	AREG	NM_017123.1	NM_017123.1		29183	8392916	NM_017123.1	Areg	NP_058819.1	ILMN_1363074	0000070026	S	848	GAAGCAGAAGAAAGAAGGAGGCTGCGGCAAGAAAACGGGACTGCACATGC	14	-	18468398-18468447	14p22	Rattus norvegicus amphiregulin (Areg), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IDA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence NAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The multiplication or reproduction of glial cells by cell division, resulting in the expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others [goid 14009] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule [goid 42327] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the epidermal growth factor receptor [goid 5154] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655544-S	ILMN_278329	RGD1306451_PREDICTED	XM_001056749.1	XM_001056749.1		316731	109487661	XM_001056749.1	RGD1306451_predicted	XP_001056749.1	ILMN_1362376	0002570292	S	1212	TCAGAGGTTGATCGTCAGTGTGCCCTGTGCTCTGCACTCACACAAGCCGC				9q38	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23017 (predicted) (RGD1306451_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660937-S	ILMN_283915	CCDC104	NM_001024866.1	NM_001024866.1		289859	67846001	NM_001024866.1	Ccdc104	NP_001020037.1	ILMN_1351688	0004050128	S	1348	GGAGCTCTTGGTCCTTTCCAGTGTCAGAGCAAATTGGAGGCCAGCCTAGG	14	-	110220162-110220211	14q22	Rattus norvegicus coiled-coil domain containing 104 (Ccdc104), mRNA.				MGC114472	MGC114472
Rattus norvegicus	RefSeq	GI_31342648-S	ILMN_291203	PAFAH2	NM_177932.2	NM_177932.2		313611	31342648	NM_177932.2	Pafah2	NP_808793.1	ILMN_1348861	0004570184	S	1112	TCAGTGGAACAGCTTCATCGAAGGCATCGGACCGTCGCTCATCCAAGGGG	5	+	153178100-153178149	5q36	Rattus norvegicus platelet-activating factor acetylhydrolase 2 (Pafah2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; An enzyme complex composed of two catalytic alpha subunits, which form a catalytic dimer, and a non-catalytic, regulatory beta subunit; the catalytic dimer may be an alpha1/alpha1 or alpha2/alpha2 homodimer, or an alpha1/alpha2 heterodimer. Modulates the action of platelet-activating factor (PAF) [goid 8247] [evidence IEA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IMP]; Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649473-S	ILMN_294847	TOE1_PREDICTED	XM_001071317.1	XM_001071317.1		298443	109477067	XM_001071317.1	Toe1_predicted	XP_001071317.1	ILMN_1372216	0000940746	S	1330	GTGATGGCCTATGTGGGCCTGAGCAAGGGACTTCAACTCTGCAGCTCTGA				5q36	PREDICTED: Rattus norvegicus target of EGR1, member 1 (nuclear) (predicted) (Toe1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653917-S	ILMN_286377	RGD1565220_PREDICTED	XM_001058402.1	XM_001058402.1		501023	109485012	XM_001058402.1	RGD1565220_predicted	XP_001058402.1	ILMN_1362673	0000050528	S	1147	AGGATACCTAGTAAGAAAAGAGACCCCGCGCCCATCGAAATAGCTGGAGC				8q24	PREDICTED: Rattus norvegicus similar to GDNF receptor alpha-like protein splice variant A (predicted) (RGD1565220_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641823	ILMN_279219	RCOR2	NM_001013994.1	NM_001013994.1		305811	62078716	NM_001013994.1	Rcor2	NP_001014016.1	ILMN_1650424	0000780156	S	1963	CCTTGGCTGGGTATCTCTGGCAGCACTAAGGATAGAAGGGACTAGGGCTC	1	+	209956789-209956838	1q43	Rattus norvegicus REST corepressor 2 (Rcor2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]	MGC105529	MGC105529
Rattus norvegicus	RefSeq	GI_47576744-S	ILMN_266149	OLR5	NM_001000112.1	NM_001000112.1		292561	47576744	NM_001000112.1	Olr5	NP_001000112.1	ILMN_1374506	0003390609	S	23	CCAACATGACCAGAGTCCATCAATTTGTGTTGTTAGGTTTTCCTACGAGG	1	+	65773998-65774047	1q12	Rattus norvegicus olfactory receptor 5 (Olr5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr1-65852087-65853025_ORF; Olr5	ratchr1-65852087-65853025_ORF; Olr5
Rattus norvegicus	RefSeq	GI_62649323-S	ILMN_68810	USP24_PREDICTED	XM_233260.3	XM_233260.3		313427	62649323	XM_233260.3	Usp24_predicted	XP_233260.3	ILMN_1373885	0006860541	S	8797	GCCTTAAAAGAGCCTGGAGTGGGAGCCAGGAGTGTGATGAGGACCTGTGC				5q34	PREDICTED: Rattus norvegicus ubiquitin specific protease 24 (predicted) (Usp24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717744-S	ILMN_268864	LOC503416	XR_007149.1	XR_007149.1		503416	109513941	XR_007149.1	LOC503416		ILMN_1372227	0001580170	S	82	GCAGATGTTCCCGTTCATCGAGCCCACCTTCCAGTGTTGCAGAAATACCC	Un|NW_047981.1	+	251441-251490		PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC503416), mRNA.					
Rattus norvegicus	RefSeq	GI_62658578-S	ILMN_279007	TAF6	XM_001066806.1	XM_001066806.1		288533	109496740	XM_001066806.1	Taf6	XP_001066806.1	ILMN_1358130	0006370167	S	2075	TCCAGCTCCAGGGACTCCAAAGGCTAATGGCTCCCAGCCTACTGGACCTA				12q11	PREDICTED: Rattus norvegicus TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence IEA]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51090] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 16986] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657581-S	ILMN_275585	GABPA_PREDICTED	XM_001065754.1	XM_001065754.1		363735	109493851	XM_001065754.1	Gabpa_predicted	XP_001065754.1	ILMN_1355153	0002100427	S	1858	GCAGCCTGGAGTAGCCACTGCTGGAGTGTAGCTGTTTCCTCTCTGCTGCT				11q11	PREDICTED: Rattus norvegicus GA repeat binding protein, alpha (predicted) (Gabpa_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662453-S	ILMN_276907	HAPLN4_PREDICTED	XM_001071382.1	XM_001071382.1		361129	109504013	XM_001071382.1	Hapln4_predicted	XP_001071382.1	ILMN_1368956	0005910369	S	1298	GATCTCGGAGGATGCGCGTTTGGGGGTGTTGATGGCTGATCCAGGGACCT				16p14	PREDICTED: Rattus norvegicus hyaluronan and proteoglycan link protein 4 (predicted) (Hapln4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576716-A	ILMN_270805	OLR1730	NM_001000279.1	NM_001000279.1		294187	47576716	NM_001000279.1	Olr1730	NP_001000279.1	ILMN_1376305	0002190086	S	666	CTCCACCATCCTGAGGATCCGCTCCTCTCAGGGGAGGCACAAAGCCTTTT	20	+	1246975-1247024	20p12	Rattus norvegicus olfactory receptor 1730 (Olr1730), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence TAS]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence TAS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Or30; MOR249-2; ratchr20-1246310-1247263_ORF; Olr1730	Or30; MOR249-2; ratchr20-1246310-1247263_ORF; Olr1730
Rattus norvegicus	RefSeq	GI_62643706-S	ILMN_290190	RGD1565157_PREDICTED	XR_008813.1	XR_008813.1		361973	109466955	XR_008813.1	RGD1565157_predicted		ILMN_1355546	0001780114	S	974	GGCAGGGATTGATGAAGGAAAGCGATAATGCTCTGGAGATCCTGCTGGAG				2q34	PREDICTED: Rattus norvegicus similar to testis-specific farnesyl pyrophosphate synthetase (predicted) (RGD1565157_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660900-S	ILMN_61458	RGD1564724_PREDICTED	XM_223624.4	XM_223624.4		289796	109500033	XM_223624.4	RGD1564724_predicted	XP_223624.4	ILMN_1373481	0006760671	S	4057	CAAGCTGCTGGGTTTGTGAGGTACCCTGGGGATGATTTCGAACACGTGGC	14	+	89402541-89402552:89406822-89406859	14q21	PREDICTED: Rattus norvegicus similar to polycystic kidney disease 1 like 1 (predicted) (RGD1564724_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27667375	ILMN_284273	RGD1307704_PREDICTED	XM_001057487.1	XM_001057487.1		314300	109479624	XM_001057487.1	RGD1307704_predicted	XP_001057487.1	ILMN_1650411	0004810706	S	1525	GATGGCATAGCTCGGCTGGTGGGTGAGGGGGGCCGCTTGTTCCTGTATTA				6q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410016O06 (predicted) (RGD1307704_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652641-S	ILMN_56497	EXOSC4_PREDICTED	XM_216949.4	XM_216949.4		300045	109480907	XM_216949.4	Exosc4_predicted	XP_216949.2	ILMN_1358189	0005690487	S	492	CCCATGCGGGACTTTGTGTGTGCATGTTCGGCTGGTTTTGTGGATGGCAC	7	+	114377041-114377090	7q34	PREDICTED: Rattus norvegicus exosome component 4 (predicted) (Exosc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652583-S	ILMN_53220	BAI1_PREDICTED	XM_343260.3	XM_343260.3		362931	109480877	XM_343260.3	Bai1_predicted	XP_343261.3	ILMN_1359499	0001450398	S	5123	TGGCTCCGATTTTTAGATACCCCCTACCCCTTGGGAAGCAGCCAGACCCC	7	+	112683168-112683217	7q34	PREDICTED: Rattus norvegicus brain-specific angiogenesis inhibitor 1 (predicted) (Bai1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638365-S	ILMN_68607	RGD1563977_PREDICTED	XM_220117.4	XM_220117.4		309557	109457635	XM_220117.4	RGD1563977_predicted	XP_220117.4	ILMN_1356822	0002480471	S	220	ACGAAGGGAAAGCCTCCCAGCCAGGCCCTACAGCTGAAAGCCAAAGCAGT	1	-	20424117-20424166	1p12	PREDICTED: Rattus norvegicus similar to protein 4.1G (predicted) (RGD1563977_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654442-S	ILMN_57227	LOC367184	XM_345995.2	XM_345995.2		367184	62654442	XM_345995.2	LOC367184	XP_345996.2	ILMN_1349738	0002030288	S	1608	CAGTACACTGACAGGACGTCACCAAGTGCCCAGGAGTGGATGTGTTGTGC					PREDICTED: Rattus norvegicus similar to RNA binding motif, single stranded interacting protein 3 (LOC367184), mRNA.					
Rattus norvegicus	RefSeq	GI_62078884-S	ILMN_285896	NOL10	NM_001014076.1	NM_001014076.1		313981	62078884	NM_001014076.1	Nol10	NP_001014098.1	ILMN_1373964	0005390019	S	2584	GAAGTTAAAGGGAGGCACCACCATGCCAGCCAGAAAGTCTGTCCTCACTG	6	+	41202543-41202592	6q16	Rattus norvegicus nucleolar protein 10 (Nol10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62641582-S	ILMN_70269	SCGB1C1_PREDICTED	XM_219490.4	XM_219490.4		309100	109459597	XM_219490.4	Scgb1c1_predicted	XP_219490.3	ILMN_1373296	0006650315	S	277	GAGGACACATAAGCAGCCCCGAAACATGGCTTGACCTCTGCGAGCAATAG	1	+	201004191-201004202:201004203-201004240	1q41	PREDICTED: Rattus norvegicus secretoglobin, family 1C, member 1 (predicted) (Scgb1c1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34576552-S	ILMN_67038	TAF9	NM_184048.1	NM_184048.1		373541	34576552	NM_184048.1	Taf9	NP_908937.1	ILMN_1351519	0001980215	S	451	GACCTAGTACTCCCACACTAGGCACACCAACTCCACAAGCCGTGTCTGTG				2q12	Rattus norvegicus TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf9), transcript variant 2, mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter [goid 6352] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + AMP = 2 ADP [goid 4017] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC108535	MGC108535
Rattus norvegicus	RefSeq	GI_62653856-S	ILMN_283969	LOC691703	XM_001079329.1	XM_001079329.1		691703	109483670	XM_001079329.1	LOC691703	XP_001079329.1	ILMN_1367833	0006420138	S	316	CAGATGTGGTGTCTGGAGCGGCTCTTGCGGGACCGAGATGGGTTTCTCCC	8	-	72186385-72186434	8q24	PREDICTED: Rattus norvegicus similar to nuclear localized factor 1 (LOC691703), mRNA.					
Rattus norvegicus	RefSeq	GI_47575986-S	ILMN_297974	OLR1457	NM_001000526.1	NM_001000526.1		363608	47575986	NM_001000526.1	Olr1457	NP_001000526.1	ILMN_1360730	0003140537	S	578	CGGAGGACGTGGGCTTTGCTGTTAGCAGCTGTGTTGTCATGAGTTCCTTG	10	-	45035441-45035490	10q22	Rattus norvegicus olfactory receptor 1457 (Olr1457), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1457	Olr1457
Rattus norvegicus	RefSeq	GI_62641974-S	ILMN_280047	RGD1311481_PREDICTED	XM_001071505.1	XM_001071505.1		309178	109463409	XM_001071505.1	RGD1311481_predicted	XP_001071505.1	ILMN_1371505	0006110139	S	712	GGACCAGAGCGTCCACAGAACGGAGAGCATTTGCCTACACAGTCTGGCTC				1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933430F08 (predicted) (RGD1311481_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18959255-S	ILMN_284095	IL24	NM_133311.1	NM_133311.1		170819	18959255	NM_133311.1	Il24	NP_579845.1	ILMN_1355102	0002030075	S	881	GGACCCCTGTCGTTGGCTCAGGCTTTTCTTCAGACCTCACTCTTTAGTCC	13	-	43831739-43831788	13q13	Rattus norvegicus interleukin 24 (Il24), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence TAS]; The multiplication or reproduction of fibroblast cells, resulting in the expansion of the fibroblast population [goid 48144] [evidence TAS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]	Mda-7; Mda7	Mda-7; Mda7
Rattus norvegicus	RefSeq	GI_11067390-S	ILMN_68265	TMEM33	NM_021671.2	NM_021671.2		59303	77732515	NM_021671.2	Tmem33	NP_067703.1	ILMN_1354684	0006770524	S	1463	AGTTCACATTGTACTTGTGCTGCTTTCTAGGACAAATGTGTTCAGCTTGC	14	-	43496713-43496762	14p11	Rattus norvegicus transmembrane protein 33 (Tmem33), transcript variant 1, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62718199-S	ILMN_70373	LOC503336	XM_578870.1	XM_578870.1		503336	62718199	XM_578870.1	LOC503336	XP_578870.1	ILMN_1367971	0006980026	S	1338	CTGCTCTCCGTAGAAGAGTAGCTGGCTCTGCAGAAAGTGCAGAAGCAGAT					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC503336), mRNA.					
Rattus norvegicus	RefSeq	GI_62659598-S	ILMN_58607	RGD1311526_PREDICTED	XM_213927.4	XM_213927.4		289159	109498081	XM_213927.4	RGD1311526_predicted	XP_213927.4	ILMN_1358610	0001570397	S	2078	TGTATGTCGTGACTTGGGGTTGAAGGAGTCGGTGCTGGCTGGACTCAGGG	13	-	78214250-78214299	13q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5630401D24 (predicted) (RGD1311526_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13540641-S	ILMN_296350	SLCO1A5	NM_030838.1	NM_030838.1		80900	13540641	NM_030838.1	Slco1a5	NP_110465.1	ILMN_1363789	0000430563	S	2606	GGAGAGGTGTGCTTTCTACCAAGCCTGACAAGGTGGGTTTGATCTCTGGG	4	-	179790318-179790367	4q44	Rattus norvegicus solute carrier organic anion transporter family, member 1a5 (Slco1a5), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of organic anions into, out of, within or between cells. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 15711] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage [goid 8514] [evidence TAS]	Oatp3; Slc21a7; Slco1a2	Oatp3; Slc21a7; Slco1a2
Rattus norvegicus	RefSeq	GI_62667033-S	ILMN_62900	RGD1559633_PREDICTED	XM_231456.4	XM_231456.4		296877	109510880	XM_231456.4	RGD1559633_predicted	XP_231456.4	ILMN_1364599	0002470279	S	2568	GTTACTCGGTGGGCGGAAGCTAACAGCACAGGAAGCATGTGATAAGGGCC	X	+	86819911-86819960	Xq31	PREDICTED: Rattus norvegicus similar to chromodomain protein, Y chromosome-like isoform a (predicted) (RGD1559633_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929093-S	ILMN_294855	GDA	NM_031776.1	NM_031776.1		83585	13929093	NM_031776.1	Gda	NP_113964.1	ILMN_1357452	0001500068	S	1424	TATGTGGGTGGAAAGCAGGTCGTTCCATTCTCCAGCTCCGTGTAAGGCCC	1	-	224579836-224579842:224579843-224579885	1q51	Rattus norvegicus guanine deaminase (Gda), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: guanine + H2O = xanthine + NH3 [goid 8892] [evidence IDA]; Catalysis of the reaction: guanine + H2O = xanthine + NH3 [goid 8892] [evidence IEA]; Catalysis of the reaction: guanine + H2O = xanthine + NH3 [goid 8892] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: guanine + H2O = xanthine + NH3 [goid 8892] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Cypin	Cypin
Rattus norvegicus	RefSeq	GI_62658394-S	ILMN_262870	LOC360760	XM_001068449.1	XM_001068449.1		360760	109496526	XM_001068449.1	LOC360760	XP_001068449.1	ILMN_1350355	0006840152	S	4353	GCAGATGCCTTTGAGGGAGCCCTCTATTCTGCTTTGACCTTGGTTCTGTC				12p11	PREDICTED: Rattus norvegicus similar to PABP-dependent poly(A) nuclease 3 (LOC360760), mRNA.					
Rattus norvegicus	RefSeq	GI_62657201-S	ILMN_48808	RGD1309285_PREDICTED	XM_221028.4	XM_221028.4		303599	109489163	XM_221028.4	RGD1309285_predicted	XP_221028.4	ILMN_1356418	0001770142	S	6190	CGGGACTCTCGACAAGGGCAGACATCGCCTATCAAACCAAAGAGACCATT	10	+	95318224-95318273	10q32.1	PREDICTED: Rattus norvegicus similar to KIAA1636 protein (predicted) (RGD1309285_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663277	ILMN_56156	LOC497709	XM_579662.1	XM_579662.1		497709	62663277	XM_579662.1	LOC497709	XP_579662.1	ILMN_1650951	0001850575	S	1	CTGTGTGGGTGTTCCAACCAGCTGGGGGGATTGTGCTTTCAGCACATTTG					PREDICTED: Rattus norvegicus similar to polyubiquitin (LOC497709), partial mRNA.					
Rattus norvegicus	RefSeq	GI_34932441-S	ILMN_52149	RGD1560896_PREDICTED	XM_574173.2	XM_574173.2		498885	109506794	XM_574173.2	RGD1560896_predicted	XP_574173.1	ILMN_1373516	0004590278	S	743	GTCACTGCTGTTGCTGGCCTGACTTCTTATCCTTTTGACACGGTTCGCCG	18	+	71853876-71853925	18q12.3	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (predicted) (RGD1560896_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664636-S	ILMN_52149	RGD1560896_PREDICTED	XM_574173.2	XM_574173.2		498885	109506794	XM_574173.2	RGD1560896_predicted	XP_574173.1	ILMN_1352512	0003710609	S	746	ACTGCTGTTGCTGGCCTGACTTCTTATCCTTTTGACACGGTTCGCCGTCG	18	+	71853879-71853928	18q12.3	PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (predicted) (RGD1560896_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018241-S	ILMN_283989	ENTPD1	NM_022587.1	NM_022587.1		64519	12018241	NM_022587.1	Entpd1	NP_072109.1	ILMN_1374255	0006590373	S	1397	TGGGCAAGATCAAAGACAGCAACGCAGGGTGGACTTTGGGCTACATGCTG	1	+	245887403-245887419	1q54	Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 1 (Entpd1), mRNA.	A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside diphosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with diphosphate on its glycose moiety [goid 9181] [evidence ISS]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleotide + phosphate [goid 17110] [evidence ISS]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence ISS]	NTPDase-1	NTPDase-1
Rattus norvegicus	RefSeq	GI_25282418-S	ILMN_269944	CANX	NM_172008.1	NM_172008.1		29144	25282418	NM_172008.1	Canx	NP_742005.1	ILMN_1352468	0001570497	S	1415	GGCAGATGCTGGAGGCAGCTGAAGAGCGTCCATGGCTTTGGGTGGTCTAC	10	-	35855284-35855333	10q22	Rattus norvegicus calnexin (Canx), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667564-S	ILMN_269815	FLNA_PREDICTED	XM_001056685.1	XM_001056685.1		293860	109462322	XM_001056685.1	Flna_predicted	XP_001056685.1	ILMN_1368821	0002650390	S	8209	CCTGCGCTGTGTTCACCTGCCTTTGGGCTTTCACTTGGGCAGAGGGAGTT				Xq37	PREDICTED: Rattus norvegicus filamin, alpha (predicted) (Flna_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718029-S	ILMN_265705	LOC301119	XM_001056216.1	XM_001056216.1		301119	109486547	XM_001056216.1	LOC301119	XP_001056216.1	ILMN_1352801	0001780722	S	3522	GGGACCAGGAGAGCTGTGTTTGTAATGAGCTGCAGGGCCATTTGTCCCGC					PREDICTED: Rattus norvegicus similar to myeloid/lymphoid or mixed lineage-leukemia translocation to 1 homolog, transcript variant 4 (LOC301119), mRNA.					
Rattus norvegicus	RefSeq	GI_13928925-S	ILMN_302392	MYBBP1A	NM_031668.1	NM_031668.1		60571	13928925	NM_031668.1	Mybbp1a	NP_113856.1	ILMN_1356646	0006450037	S	3678	GAAGGCTCTCAGCACAAAGGAGGTCAAAAGAAGGTCCTCCCAGTCTGCCC	10	+	59335448-59335497	10q24	Rattus norvegicus MYB binding protein (P160) 1a (Mybbp1a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex which usually consists of three components, e.g. in Xenopus, the importin alpha and beta-subunits and any protein which has a nuclear localization sequence (NLS). The complex acts to import proteins with an NLS into the nucleus through a nuclear pore [goid 42564] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22904] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence NAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]	DBP	DBP
Rattus norvegicus	RefSeq	GI_62647404-S	ILMN_65322	LOC500170	XM_575522.1	XM_575522.1		500170	62647404	XM_575522.1	LOC500170	XP_575522.1	ILMN_1373897	0000770131	S	447	CTGCTGCTCTGGCTCCCAGGTGGTAAATGTGACATCCAGGTGACACAGTC					PREDICTED: Rattus norvegicus similar to Ig kappa chain (LOC500170), mRNA.					
Rattus norvegicus	RefSeq	GI_62651647-S	ILMN_286069	OBFC2B	NM_001034939.1	NM_001034939.1		362813	77917573	NM_001034939.1	Obfc2b	NP_001030111.1	ILMN_1373185	0000780451	S	988	CCCTGTCAGCAACGGCAAAGAAACCCGCAGGAGCAGCAAGAGATAGCAAG	7	-	1693419-1693423:1693424-1693468	7q11	Rattus norvegicus oligonucleotide/oligosaccharide-binding fold containing 2B (Obfc2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]	RGD1308158; MGC125161	RGD1308158; MGC125161
Rattus norvegicus	RefSeq	GI_62657061-S	ILMN_277683	MLX	NM_001034112.1	NM_001034112.1		360631	77627982	NM_001034112.1	Mlx	NP_001029284.1	ILMN_1370060	0007050215	S	1696	GAAGATACCCAAATCTTCTGGGGGCAGGCAAGGGTGATACCTTGGGATTC	10	+	90108753-90108802	10q32.1	Rattus norvegicus MAX-like protein X (Mlx), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	Tcfl4	Tcfl4
Rattus norvegicus	RefSeq	GI_62648028-S	ILMN_48866	ARPC4_PREDICTED	XM_238365.4	XM_238365.4		297518	109472471	XM_238365.4	Arpc4_predicted	XP_238365.3	ILMN_1356401	0001050044	S	1305	GGGCCTTGTAGAGGTGGTATGGACCCTCTGCTAGCTTCTTGAGTTCTGCC	4	+	149270275-149270324	4q42	PREDICTED: Rattus norvegicus actin related protein 2/3 complex, subunit 4 (predicted) (Arpc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647872-S	ILMN_64528	LOC297481	XM_216226.4	XM_216226.4		297481	109472435	XM_216226.4	LOC297481	XP_216226.4	ILMN_1365630	0002690551	S	805	TGTCCTTGCAGTCTGGGCGATTAGGACTCAAAGTGGCAGGTGGGGTTGGG	4	-	134472607-134472656	4q34	PREDICTED: Rattus norvegicus similar to eukaryotic translation initiation factor 4E member 3 (LOC297481), mRNA.					
Rattus norvegicus	RefSeq	GI_47578084-S	ILMN_276690	OLR625	NM_001000649.1	NM_001000649.1		404846	47578084	NM_001000649.1	Olr625	NP_001000649.1	ILMN_1356187	0002640315	S	671	GGAATTACTCAGCAGAAGGGAGACGCAAAGCTCTTTCTACCTGTGGGTCC	3	-	72234066-72234115	3q24	Rattus norvegicus olfactory receptor 625 (Olr625), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr625	Olr625
Rattus norvegicus	RefSeq	GI_62661364-S	ILMN_54658	LOC290033	XM_223966.3	XM_223966.3		290033	62661364	XM_223966.3	LOC290033	XP_223966.3	ILMN_1368091	0001990079	S	118	TGCGCTTCCAGAGTGCAGATACTGGTGCTTTGCAGAACGTAAGGAAGGCC					PREDICTED: Rattus norvegicus similar to Histone H3.3 (LOC290033), mRNA.					
Rattus norvegicus	RefSeq	GI_62653523-S	ILMN_57225	LOC302093	XM_217531.3	XM_217531.3		302093	62653523	XM_217531.3	LOC302093	XP_217531.2	ILMN_1362637	0006940148	S	633	CCAGACCAAGCAACATCTGGATAACACCACTTGAGAGACCACTTGGGAAC				8q21	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4b (LOC302093), mRNA.					
Rattus norvegicus	RefSeq	GI_62660512-S	ILMN_55306	LOC498371	XM_573606.1	XM_573606.1		498371	62660512	XM_573606.1	LOC498371	XP_573606.1	ILMN_1352952	0005670301	S	1503	GGCTTTTTCCTTAATACCCCCACTCCAACAAACAGACCTACTTCCACTCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC498371), mRNA.					
Rattus norvegicus	RefSeq	GI_62650429-S	ILMN_272349	ASXL2_PREDICTED	XM_001066262.1	XM_001066262.1		313922	109479023	XM_001066262.1	Asxl2_predicted	XP_001066262.1	ILMN_1352587	0003450687	S	4246	GACTGTCACTACCATCCCTGCTAGCCAAGCAATGAATCCCAGCAGCCATG				6q14	PREDICTED: Rattus norvegicus additional sex combs like 2 (Drosophila) (predicted) (Asxl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12248180-S	ILMN_290736	GRIN2D	NM_022797.1	NM_022797.1		24412	12248180	NM_022797.1	Grin2d	NP_073634.1	ILMN_1361760	0006020139	S	4987	AAGGGCTTTTTAACGTCACCTGATTGGCGGGAGGTGTGGGGGAGTCACGC				1q22	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate 2D (Grin2d), mRNA.	A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex [goid 8328] [evidence TAS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 35249] [evidence IMP]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IEA]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IEA]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence IEA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IEA]	Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IMP];  [goid 4972] [evidence IMP];  [goid 4972] [evidence IEA]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence IDA]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IMP]; Catalysis of the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion [goid 22843] [evidence IMP]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IMP];  [goid 4972] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4972] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34576546-S	ILMN_298928	SRPK3	NM_184045.1	NM_184045.1		293854	34576546	NM_184045.1	Srpk3	NP_908934.1	ILMN_1354980	0005340524	S	1734	ACTGCAGCTGTGGACAGTAGGGGCTATGCTAGCTTTCAGTGCCTTGAGGG	X	+	159701068-159701117	Xq37	Rattus norvegicus SFRS protein kinase 3 (Srpk3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Mssk1; Stk23	Mssk1; Stk23
Rattus norvegicus	RefSeq	GI_62653530-S	ILMN_297273	PMP22CD	NM_001024359.1	NM_001024359.1		500980	66730514	NM_001024359.1	Pmp22cd	NP_001019530.1	ILMN_1365065	0001940253	S	791	CGTCGTGTGACCTGGGCTCTGTGACTTGATGGTCTGCACCTTTCATACTG	8	+	43099283-43099306:43099307-43099332	8q22	Rattus norvegicus PMP22 claudin domain-containing protein (Pmp22cd), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62639218-S	ILMN_284055	RGD1306256_PREDICTED	XM_001077910.1	XM_001077910.1		361528	109461531	XM_001077910.1	RGD1306256_predicted	XP_001077910.1	ILMN_1361519	0003170132	S	498	CAAGGTGCTGGAGAAACAGCAGGGCAACTTCAAGGCCACCTATCGTGCCG				1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30373 (predicted) (RGD1306256_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646667-S	ILMN_273757	SRPK2_PREDICTED	XM_001059468.1	XM_001059468.1		296753	109472926	XM_001059468.1	Srpk2_predicted	XP_001059468.1	ILMN_1353945	0002370072	S	3154	CAGTTTGCAGCGCAGTGGACAGAACACGCCTCACAGCTTACAGGTAGCCG				4q11	PREDICTED: Rattus norvegicus serine/arginine-rich protein specific kinase 2 (predicted) (Srpk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647036-S	ILMN_268088	TTC26	NM_001025045.1	NM_001025045.1		500086	68163522	NM_001025045.1	Ttc26	NP_001020216.1	ILMN_1371694	0000380162	S	1459	CTCAAGATGGAAACCTCCGGCGAGTCCTTCAGCCTCTTACAGCTCATTGC	4	+	65979946-65979995	4q22	Rattus norvegicus tetratricopeptide repeat domain 26 (Ttc26), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643340-S	ILMN_66018	LOC499596	XM_574920.1	XM_574920.1		499596	62643340	XM_574920.1	LOC499596	XP_574920.1	ILMN_1352609	0003360722	S	212	GCCAAAAGATACCCAACTCTGCCCTCCTCAGCACGAGGGGAAAGCAGACA				2q25	PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (LOC499596), mRNA.					
Rattus norvegicus	RefSeq	GI_6978466-A	ILMN_279452	ADRBK2	NM_012897.1	NM_012897.1		25372	6978466	NM_012897.1	Adrbk2	NP_037029.1	ILMN_1376414	0004150546	S	2122	CCCAGCAGTGGAATGGAGCCACGGGGAACCGTGTGGGGCTGAGACACAGT					Rattus norvegicus adrenergic receptor kinase, beta 2 (Adrbk2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]	The process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway [goid 2029] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45744] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence ISS]; Catalysis of the phosphorylation of a G-protein coupled receptor, thereby modulating its activity [goid 4703] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a beta-2 adrenergic receptor [goid 31698] [evidence TAS]; Catalysis of the reaction: ATP + beta-adrenergic receptor = ADP + phospho-beta-adrenergic receptor [goid 47696] [evidence IEA]	Grk3	Grk3
Rattus norvegicus	RefSeq	GI_47577838-S	ILMN_271874	OLR1200	NM_001000966.1	NM_001000966.1		405319	47577838	NM_001000966.1	Olr1200	NP_001000966.1	ILMN_1361167	0002350110	S	243	GCTGGTGGGCTTTGTTGTGAGGAAGAACATCATCTCCTACGCAGGGTGTA	8	+	39241992-39242041	8q21	Rattus norvegicus olfactory receptor 1200 (Olr1200), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1200	Olr1200
Rattus norvegicus	RefSeq	GI_62666204-S	ILMN_63076	LOC502452	XM_577933.1	XM_577933.1		502452	62666204	XM_577933.1	LOC502452	XP_577933.1	ILMN_1349901	0001570605	S	540	TTGGCAATTGGAGGTCTCAGTGGCAGGGATGAGGCAGAACAGGATAACCT					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502452), mRNA.					
Rattus norvegicus	RefSeq	GI_62667223-S	ILMN_50747	LOC367898	XM_579012.1	XM_579012.1		367898	62667223	XM_579012.1	LOC367898	XP_579012.1	ILMN_1374433	0006370735	S	322	GGAGGGATGCAAAGACACGTGGAAAACTGACATCCTCATTCCTGCTCTTC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC367898), mRNA.					
Rattus norvegicus	RefSeq	GI_62638819-S	ILMN_293728	TMC4	NM_001034104.1	NM_001034104.1		308310	77681957	NM_001034104.1	Tmc4	NP_001029276.1	ILMN_1368746	0000580079	S	1942	GGGAACCCAGGCTTTTACTGTACCCCTTCTGATCGTCTCTAGCATCCTGA	1	+	63863491-63863532:63864193-63864200	1q12	Rattus norvegicus transmembrane channel-like 4 (Tmc4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124845	MGC124845
Rattus norvegicus	RefSeq	GI_62652909-S	ILMN_70214	RGD1311907_PREDICTED	XM_235559.4	XM_235559.4		315216	109481124	XM_235559.4	RGD1311907_predicted	XP_235559.4	ILMN_1373365	0005050167	S	1793	ACAGAGAGCGTCTGGACAAGGAGAAGGAGGGTGTCGGAGACATTGCTGCC	7	+	127402510-127402513:127402638-127402683	7q34	PREDICTED: Rattus norvegicus hypothetical LOC315216 (predicted) (RGD1311907_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476291-S	ILMN_282962	TALDO1	NM_031811.2	NM_031811.2		83688	42476291	NM_031811.2	Taldo1	NP_113999.2	ILMN_1358976	0005050014	S	926	TGGCTGTGGAGAAGCTCTCTGATGGGATCCGCAAGTTTGCTGCTGATGCC	1	+	201592422-201592471	1q41	Rattus norvegicus transaldolase 1 (Taldo1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses [goid 6098] [evidence IDA]; The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses [goid 6098] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P [goid 9052] [evidence IDA]; The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P [goid 9052] [evidence IDA]; The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis [goid 19682] [evidence IDA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate [goid 4801] [evidence IDA]; Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate [goid 4801] [evidence IEA]; Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate [goid 4801] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_56606110-S	ILMN_283214	AOX3	NM_001008527.1	NM_001008527.1		493909	56606110	NM_001008527.1	Aox3	NP_001008527.1	ILMN_1363705	0000610746	S	4266	GCCAAAGGTCACGGTTAGGTCAACTAAACCTCATTTCCCAGTGGGTGAAG	9	+	56867371-56867420	9q31	Rattus norvegicus aldehyde oxidase 3 (Aox3), mRNA.			Catalysis of the reaction: an aldehyde + H2O + O2 = a carboxylic acid + H2O2 [goid 4031] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with molybdenum (Mo) ions [goid 30151] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]; Interacting selectively with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51537] [evidence IEA]	Aoh1	Aoh1
Rattus norvegicus	RefSeq	GI_62659919-I	ILMN_55569	GPATC2_PREDICTED	XM_573535.1	XM_573535.1		289362	62659919	XM_573535.1	Gpatc2_predicted	XP_573535.1	ILMN_1375482	0005910195	S	1497	GAGAGCAACATCGGGAACCGAATGCTTCAGAGTATGGGATGGACACCCGG				13q26	PREDICTED: Rattus norvegicus G patch domain containing 2 (predicted) (Gpatc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665916-S	ILMN_263545	RGD1306739_PREDICTED	XM_001080360.1	XM_001080360.1		361834	109510013	XM_001080360.1	RGD1306739_predicted	XP_001080360.1	ILMN_1355613	0000460091	S	1066	CCGCCCCTCCCATTCCACACCCACCTCTGAGTTTACAGGGCCAAAAGCAA				20p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700040L02 (predicted) (RGD1306739_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661950-S	ILMN_70318	LOC290262	XM_224224.2	XM_224224.2		290262	62661950	XM_224224.2	LOC290262	XP_224224.2	ILMN_1358245	0005080086	S	134	CTTTGTGCTGACTGCTGCTCACTGGGCCCATAACATCAAAGAACAGGAGA					PREDICTED: Rattus norvegicus similar to Natural killer cell protease 1 precursor (RNKP-1) (Granzyme B) (LOC290262), mRNA.					
Rattus norvegicus	RefSeq	Rn.98667	ILMN_298861	HSPCB	NM_001004082.2	NM_001004082.2		301252	51890228	NM_001004082.2	Hspcb	NP_001004082.2	ILMN_1530363	0004730279	S	853	ATGACAGCGGCAAAGATAAGAAAAAGAAAACAAAGAAGATCAAGGAGAAG	9	+	11036197-11036246	9q12	Rattus norvegicus heat shock 90kDa protein 1, beta (Hspcb), mRNA.				HSP90-BETA; HSPC2; HSP90B; MGC94263	HSP90-BETA; HSPC2; HSP90B; MGC94263
Rattus norvegicus	RefSeq	GI_51890228-S	ILMN_298861	HSPCB	NM_001004082.2	NM_001004082.2		301252	51890228	NM_001004082.2	Hspcb	NP_001004082.2	ILMN_1354336	0003850286	S	2066	GTCTTCTCTCGCTTCTCACTTTAGGAGGCCCAAAACCCACTCCAACCGCA	9	+	11038453-11038502	9q12	Rattus norvegicus heat shock 90kDa protein 1, beta (Hspcb), mRNA.				HSP90-BETA; HSPC2; HSP90B; MGC94263	HSP90-BETA; HSPC2; HSP90B; MGC94263
Rattus norvegicus	RefSeq	GI_62641399-S	ILMN_288871	LOC678825	XM_001053354.1	XM_001053354.1		678825	109463018	XM_001053354.1	LOC678825	XP_001053354.1	ILMN_1361102	0006200093	S	1401	GAGCTACGATGTGGTCTACGTGCAGTGTAAAGTTGCTGTCTGCCGACTCG					PREDICTED: Rattus norvegicus similar to deleted in malignant brain tumors 1 isoform a precursor (LOC678825), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20806140-S	ILMN_295775	SLC25A3	NM_139100.1	NM_139100.1		245959	20806140	NM_139100.1	Slc25a3	NP_620800.1	ILMN_1358392	0000110020	S	934	GTATGGAAGGGGCTCTTCGCCCGAATCATCATGATTGGCACTCTGACGGC	7	-	28054922-28054971	7q13	Rattus norvegicus solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 (Slc25a3), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphate(out) + H+(out) = phosphate(in) + H+(in) [goid 15317] [evidence NAS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Phc	Phc
Rattus norvegicus	RefSeq	GI_62646848-S	ILMN_61424	ACN9	XM_342641.3	XM_342641.3		362323	109471724	XM_342641.3	Acn9	XP_342642.1	ILMN_1370020	0004060292	S	303	TCGGACAGTTGCAGGAGCTAATGCAGGAAGCTACTAAGCCGAATCGGCAG	4	+	32150968-32151017	4q21	PREDICTED: Rattus norvegicus ACN9 homolog (S. cerevisiae), transcript variant 2 (Acn9), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_47577980-S	ILMN_291870	OLR1095	NM_001000416.1	NM_001000416.1		299576	47577980	NM_001000416.1	Olr1095	NP_001000416.1	ILMN_1352640	0001770292	S	600	AAAGGGTGTGGGGATGGTGTGCATCACAGCCCTCCTGGGATGCTTTCTCC	7	-	14451726-14451775	7q11	Rattus norvegicus olfactory receptor 1095 (Olr1095), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr7-14452375-14451419_ORF; Olr1095	ratchr7-14452375-14451419_ORF; Olr1095
Rattus norvegicus	RefSeq	GI_61557227-S	ILMN_278087	LEPROTL1	NM_001013188.1	NM_001013188.1		361160	61557227	NM_001013188.1	Leprotl1	NP_001013206.1	ILMN_1372343	0007050050	S	329	GCCAGGGCACATCTGATTGAATGGGGAGCATGCGCACTTGTTCTCACCGG	16	+	61777682-61777692:61778853-61778891	16q12.2	Rattus norvegicus leptin receptor overlapping transcript-like 1 (Leprotl1), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16923961-S	ILMN_265823	PPP2R2C	NM_057116.1	NM_057116.1		117256	16923961	NM_057116.1	Ppp2r2c	NP_476457.1	ILMN_1369121	0002650619	S	1162	CTCAAGCCAAGGCGCGTGTGTGTGGGTGGCAAGCGGCGGCGTGATGACAT				14q21	Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform (Ppp2r2c), mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]	Pr52	Pr52
Rattus norvegicus	RefSeq	GI_62657654-S	ILMN_61093	LOC498064	XM_579779.1	XM_579779.1		498064	62657654	XM_579779.1	LOC498064	XP_579779.1	ILMN_1374697	0002640088	S	382	GTCACTTCTGGGGACAGTCAATCTCAACTCCCACATACTCCAGGTGACAG					PREDICTED: Rattus norvegicus LOC498064 (LOC498064), mRNA.					
Rattus norvegicus	RefSeq	GI_62078618-S	ILMN_288720	IGHG	NM_001013945.1	NM_001013945.1		299354	62078618	NM_001013945.1	Ighg	NP_001013967.1	ILMN_1355545	0002690593	S	1059	GATGCAAGGTCACCAGTGCAGCTTTCCCATCCCCCATCGAGAAAACCATC				6q32	Rattus norvegicus Immunoglobulin heavy chain (gamma polypeptide) (Ighg), mRNA.			Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652437-S	ILMN_69261	LOC366937	XM_345841.2	XM_345841.2		366937	62652437	XM_345841.2	LOC366937	XP_345842.2	ILMN_1357148	0003170647	S	27	CGGTTGATGTCTGAAGGGAAATGGATTGCAGCAGGAGGCTATGCAGTGCC				7q32	PREDICTED: Rattus norvegicus similar to Ki-67 (LOC366937), mRNA.					
Rattus norvegicus	RefSeq	GI_62661411-S	ILMN_63401	LOC290086	XM_214167.3	XM_214167.3		290086	62661411	XM_214167.3	LOC290086	XP_214167.2	ILMN_1368125	0003360037	S	346	TGCAGAAAGCCTCAGTGCAAGCGTCGGACTCGGCCATGTACTACTGTGCT				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain V region (LOC290086), mRNA.					
Rattus norvegicus	RefSeq	GI_62645749-S	ILMN_50978	LOC502660	XM_578154.1	XM_578154.1		502660	62645749	XM_578154.1	LOC502660	XP_578154.1	ILMN_1366538	0000730484	S	50	CAGAGGATCTGCCTACAACTATTGGTACACTGCTATCTGTAAGCCCCTCC				3q34	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr1318 (LOC502660), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62640876-S	ILMN_58821	LOC499198	XM_574485.1	XM_574485.1		499198	62640876	XM_574485.1	LOC499198	XP_574485.1	ILMN_1355745	0005080427	S	1324	GATAGATAAACCCTTTGCCAGACTAACAAGAGGACACAGAGAGTGCGTCC					PREDICTED: Rattus norvegicus similar to LRRGT00174 (LOC499198), mRNA.					
Rattus norvegicus	RefSeq	GI_56799416-S	ILMN_271833	MAP2K6	NM_053703.2	NM_053703.2		114495	56799416	NM_053703.2	Map2k6	NP_446155.1	ILMN_1361132	0002360400	S	1777	CTCAAGCAAAGGGGCTCTTCCTATGCACTGTGGCTTGCGGCTGTCATGGC	10	+	99974433-99974482	10q32.1	Rattus norvegicus mitogen-activated protein kinase kinase 6 (Map2k6), mRNA.		Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence ISS]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IEA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Mkk6; MGC93287	Mkk6; MGC93287
Rattus norvegicus	RefSeq	GI_25742634-S	ILMN_269878	IHPK1	NM_053316.1	NM_053316.1		50560	25742634	NM_053316.1	Ihpk1	NP_445768.1	ILMN_1365950	0006550021	S	4008	CCTGGAAGCTACACACCCTAAGACCTGCGCCTGGATACATACGTGGCTCC	8	+	113316442-113316491	8q32	Rattus norvegicus inositol hexaphosphate kinase 1 (Ihpk1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence ISS]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence ISS]	Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence ISS]; Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate [goid 8440] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Itpk6	Itpk6
Rattus norvegicus	RefSeq	GI_62660770-S	ILMN_54385	TMED4_PREDICTED	XM_223611.4	XM_223611.4		305502	109499977	XM_223611.4	Tmed4_predicted	XP_223611.1	ILMN_1374365	0001690064	S	1711	CCGGGAGTAGACTTCGGTAGGCGTTCACATAAGGATTGGCCTGGGAATGG	14	-	86997537-86997586	14q21	PREDICTED: Rattus norvegicus transmembrane emp24 protein transport domain containing 4 (predicted) (Tmed4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651102-S	ILMN_70031	RGD1561926_PREDICTED	XM_576077.2	XM_576077.2		500695	109478551	XM_576077.2	RGD1561926_predicted	XP_576077.2	ILMN_1359406	0001190114	S	1261	GCTCTTCAACCAGTCCAAGGGTATGGACAGTGGATTTGCAGGTGGAGAAG	6	-	111689762-111689793:111691483-111691500	6q31	PREDICTED: Rattus norvegicus similar to Nuclear protein SkiP (Ski-interacting protein) (predicted) (RGD1561926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575870-S	ILMN_280978	CDK4	NM_053593.2	NM_053593.2		94201	47575870	NM_053593.2	Cdk4	NP_446045.1	ILMN_1373114	0007000100	S	1064	TTACCTGCACAAGGAGGAAAGTGACCCGGAGTGAGGAGAGGGGCTGCCTT				7q22	Rattus norvegicus cyclin-dependent kinase 4 (Cdk4), mRNA.	Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IMP]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IDA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IMP]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence TAS]; Any process that increases cell size [goid 45793] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence TAS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension [goid 55093] [evidence IEP]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence ISS]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_47576374-S	ILMN_286989	OLR1551	NM_001000727.1	NM_001000727.1		404981	47576374	NM_001000727.1	Olr1551	NP_001000727.1	ILMN_1372882	0006900041	S	777	TGTGCTCCCTGCATCTCAACAAACAGATGAACAAGGTATGATGGACTCGC	11	+	42223995-42224044	11q12	Rattus norvegicus olfactory receptor 1551 (Olr1551), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1551	Olr1551
Rattus norvegicus	RefSeq	GI_62662217-S	ILMN_56521	LOC498581	XM_573857.1	XM_573857.1		498581	62662217	XM_573857.1	LOC498581	XP_573857.1	ILMN_1367067	0000460563	S	1170	CAGAGCCCTTCAGACAGTAGTGAATGTACCAGGCCCCTAACCAAGGTCTG					PREDICTED: Rattus norvegicus similar to C10orf73 protein (LOC498581), mRNA.					
Rattus norvegicus	RefSeq	GI_54312107	ILMN_54334	SFPI1	NM_001005892.2	NM_001005892.2		366126	61889121	NM_001005892.2	Sfpi1	NP_001005892.1	ILMN_1651146	0005270471	S	788	GCACCGCTGGGGCATCCAGAAGGGAAACCGCAAGAAGATGACCTACCAGA	3	+	75475169-75475218	3q24	Rattus norvegicus SFFV proviral integration 1 (Sfpi1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whereby a relatively unspecialized precursor cell acquires specialized features of B cells, T cells, or natural killer cells [goid 30098] [evidence ISS]; The process whereby a relatively unspecialized precursor cell acquires specialized features of B cells, T cells, or natural killer cells [goid 30098] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence IEA]; The process by which a myeloid precursor cell acquires the specialized features of a granulocyte. Granulocytes are a class of leukocytes characterized by the presence of granules in their cytoplasm. These cells are active in allergic immune reactions such as arthritic inflammation and rashes. This class includes basophils, eosinophils and neutrophils [goid 30851] [evidence ISS]; The process by which a myeloid precursor cell acquires the specialized features of a granulocyte. Granulocytes are a class of leukocytes characterized by the presence of granules in their cytoplasm. These cells are active in allergic immune reactions such as arthritic inflammation and rashes. This class includes basophils, eosinophils and neutrophils [goid 30851] [evidence IEA]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence ISS]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence ISS]; Any process that modulates the frequency, rate or extent of erythrocyte differentiation [goid 45646] [evidence IEA]; Any process that modulates the frequency, rate or extent of erythrocyte differentiation [goid 45646] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Pu.1	Pu.1
Rattus norvegicus	RefSeq	GI_62659847-S	ILMN_51656	LOC360885	XM_341160.2	XM_341160.2		360885	62659847	XM_341160.2	LOC360885	XP_341161.2	ILMN_1356174	0002630372	S	1182	ATGTCTGACGAGCCGATGGAGAGAGGAGCAACAGCCAAAGAGCCAGGTCC					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32001 (predicted) (LOC360885), mRNA.					
Rattus norvegicus	RefSeq	GI_62661511-S	ILMN_266678	MCPT1L2	XM_001058060.1	XM_001058060.1		408238	109502452	XM_001058060.1	Mcpt1l2	XP_001058060.1	ILMN_1356959	0004150242	S	561	GTGTGTGGGCAGTCTTGGAAGGAAGAGATCACCATGTGAGGGAGACTCCG				15p12	PREDICTED: Rattus norvegicus mast cell protease 1-like 2 (Mcpt1l2), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666406-S	ILMN_292720	RGD1562760_PREDICTED	XR_005465.1	XR_005465.1		313310	109510336	XR_005465.1	RGD1562760_predicted		ILMN_1351252	0005080358	S	1239	TTGGCTCTGCTGGAGGCTGGAGGGTGCTAGGCCCCTGTGTTAGTAGTGCA	X	+	4066820-4066869	Xq11	PREDICTED: Rattus norvegicus RGD1562760 (predicted) (RGD1562760_predicted), misc RNA.					
Rattus norvegicus	RefSeq	GI_62641890-S	ILMN_294336	MS4A1_PREDICTED	XM_001075218.1	XM_001075218.1		309217	109463580	XM_001075218.1	Ms4a1_predicted	XP_001075218.1	ILMN_1350603	0000840176	S	1427	GAGAGGAAATGAGCTGCCTATATGCCTGTGGGGAAGGCACAAAATGTGAC				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 1 (predicted) (Ms4a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33414516-S	ILMN_283771	ZFP472	NM_182823.1	NM_182823.1		314587	33414516	NM_182823.1	Zfp472	NP_877975.1	ILMN_1360969	0002680750	S	1792	GGTCCCCCGTGCTCTCCATAAGATGACAACCTGAACAGCTGGTTCTACTG	7	+	13660989-13661038	7q11	Rattus norvegicus zinc finger protein 472 (Zfp472), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	KRIM-1	KRIM-1
Rattus norvegicus	RefSeq	GI_62662315-S	ILMN_61995	LOC306294	XM_224652.3	XM_224652.3		306294	62662315	XM_224652.3	LOC306294	XP_224652.3	ILMN_1355757	0004810008	S	568	ACTTCAACCTAAACCTGAGGAGTGGGACCACTTCAGCCCCGTGGGTTCAC				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC306294), mRNA.					
Rattus norvegicus	RefSeq	GI_62657282-S	ILMN_264324	ABCA8A_PREDICTED	XM_001081603.1	XM_001081603.1		303638	109492137	XM_001081603.1	Abca8a_predicted	XP_001081603.1	ILMN_1367219	0001050162	S	4540	AGGTGAAGACCCCCACACAGGTGGAGCCCCTCAACATGGAGATCATGAGG				10q32.1	PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 8a (predicted) (Abca8a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649947-S	ILMN_55544	RGD1561421_PREDICTED	XM_575943.2	XM_575943.2		500576	109475747	XM_575943.2	RGD1561421_predicted	XP_575943.1	ILMN_1368178	0006100687	S	667	GGTTCCAAGTTTGACCAGTACATGCATACAGATGTGCCGGAGCGGGACCT	5	+	160076030-160076037:160076229-160076270	5q36	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561421_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078522-S	ILMN_284044	LOC292516	NM_001013893.1	NM_001013893.1		292516	62078522	NM_001013893.1	LOC292516	NP_001013915.1	ILMN_1360581	0004150672	S	1270	AGTGCTCCGCAAGTGCTCATGATTCAGCACAGGGTCAGGAGAGGTGTGAG	1	-	62138039-62138067:62138068-62138088	1q12	Rattus norvegicus similar to actin-like 7-alpha-like protein (LOC292516), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process by which a methyl group is covalently attached to a molecule [goid 32259] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654760-S	ILMN_50998	LOC367226	XM_346024.2	XM_346024.2		367226	62654760	XM_346024.2	LOC367226	XP_346025.2	ILMN_1352582	0003990746	S	313	GGAAAGTTCACTGGCGTGGCATCCCATGTTCCTACCCACAAAGTATCCCC				9q13	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC367226), mRNA.					
Rattus norvegicus	RefSeq	GI_34881547-S	ILMN_55701	SERPINA7	XM_343823.2	XM_343823.2		81806	109511132	XM_343823.2	Serpina7	XP_343824.2	ILMN_1370979	0004780021	S	1427	CAGGAGTACAGTGACTGTGGAAGAGGCTAATCCTGTGACCAAACATGCAG	X	-	126739512-126739561	Xq35	PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antipeptidase, antitrypsin), member 7 (Serpina7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]	The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the transfer of thyroid hormones from one side of the membrane to the other. Thyroid hormone are any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 15349] [evidence TAS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647621-S	ILMN_52284	LOC497787	XM_579617.1	XM_579617.1		497787	62647621	XM_579617.1	LOC497787	XP_579617.1	ILMN_1365868	0006980471	S	1280	TGGGTATTGCCCCTTAGTATAATCCATTACGTTGTCATCAGAGGTTTGGA				4q34	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133301 (LOC497787), mRNA.					
Rattus norvegicus	RefSeq	GI_47576300-S	ILMN_295302	OLR1274	NM_001000801.1	NM_001000801.1		405086	47576300	NM_001000801.1	Olr1274	NP_001000801.1	ILMN_1373739	0006350706	S	701	GATCCAAAGCCTTTAGTACCTGCAGCTCTCATATCTCAGCTGTTCTTGTC	8	-	41200638-41200687	8q22	Rattus norvegicus olfactory receptor 1274 (Olr1274), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1274	Olr1274
Rattus norvegicus	RefSeq	GI_62640939-S	ILMN_282596	RGD1561254_PREDICTED	XM_001065019.1	XM_001065019.1		499210	109462462	XM_001065019.1	RGD1561254_predicted	XP_001065019.1	ILMN_1374753	0006130408	S	1340	CTCAGTCACAGAGAATGGGAGATTGGTCTGTTGGGTGATTAGCTCCTGGC				1q32	PREDICTED: Rattus norvegicus similar to Alkaline phytoceramidase (aPHC) (Alkaline ceramidase) (predicted) (RGD1561254_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62079150-S	ILMN_264562	RGD1309784	NM_001014212.1	NM_001014212.1		363099	62079150	NM_001014212.1	RGD1309784	NP_001014234.1	ILMN_1368274	0004070609	S	1038	CTGTGATGGTGGAGGAGGGCTGGGTTGATAAACTTTGCCTGAATGGCACC	8	+	77885996-77886045	8q24	Rattus norvegicus similar to ribosomal protein L24-like; 60S ribosomal protein L30 isolog; my024 protein; homolog of yeast ribosomal like protein 24 (RGD1309784), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13487932-S	ILMN_296054	MLC3	NM_020104.1	NM_020104.1		56781	13487932	NM_020104.1	Mlc3	NP_064489.1	ILMN_1361866	0003990239	S	202	CAGTTTCTGCCCATGATGCAAGCCATCTCCAACAACAAGGACCAGGGAGG	9	-	65719568-65719617	9q32	Rattus norvegicus fast myosin alkali light chain (Mlc3), mRNA.				Mcl3	Mcl3
Rattus norvegicus	RefSeq	GI_62660221-S	ILMN_264645	RGD1562853_PREDICTED	XM_577312.1	XM_577312.1		501889	62660221	XM_577312.1	RGD1562853_predicted	XP_577312.1	ILMN_1350824	0000430497	S	1375	GATATCTGCCATACATGTGGTCAGCGCTGTGTCTATCACAATGGGTCCAG	14	-	15270391-15270440	14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1562853_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660978-S	ILMN_264645	RGD1562853_PREDICTED	XM_577312.1	XM_577312.1		501889	62660221	XM_577312.1	RGD1562853_predicted	XP_577312.1	ILMN_1355907	0003140372	S	467	ATTCCTGCCTGAAGGAAGAACAAACATGCCTGTTGAAGTGGGCCCAGCAG	14	-	15272055-15272104	14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1562853_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666732-S	ILMN_272111	RGD1564338_PREDICTED	XM_001067740.1	XM_001067740.1		367772	109511665	XM_001067740.1	RGD1564338_predicted	XP_001067740.1	ILMN_1356430	0003610131	S	188	TGCAACTGCTGCTGATAGTATGCCTGGTGGAGATTGAGCCACCTCGCCTG				Xq21	PREDICTED: Rattus norvegicus similar to aminoacylase 1 (predicted) (RGD1564338_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663500-S	ILMN_58613	CDKAL1_PREDICTED	XM_341524.2	XM_341524.2		361243	62663500	XM_341524.2	Cdkal1_predicted	XP_341525.2	ILMN_1368832	0000870537	S	3632	AGCCTCTGCGCTCCTAGCTTCAGGGTTATCAGGTTACAGCCGTCCTCAGG				17p12	PREDICTED: Rattus norvegicus CDK5 regulatory subunit associated protein 1-like 1 (predicted) (Cdkal1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640720-S	ILMN_268027	KLHL25	NM_001039006.1	NM_001039006.1		293023	84781637	NM_001039006.1	Klhl25	NP_001034095.1	ILMN_1353420	0004120309	S	1983	CGCAATGAAGTTCTCCAGCATCACCTGTACTCGGTTCCCAAAGCTGCCAG	1	+	131564847-131564896	1q31	Rattus norvegicus kelch-like 25 (Drosophila) (Klhl25), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC116251; RGD1310815	MGC116251; RGD1310815
Rattus norvegicus	RefSeq	GI_62640719-S	ILMN_268027	KLHL25	NM_001039006.1	NM_001039006.1		293023	84781637	NM_001039006.1	Klhl25	NP_001034095.1	ILMN_1364518	0002650309	S	1789	GACACATGGAACTGCATCACCAGCGTGCCCTACTCTCTCATTCCCACGGC	1	+	131560488-131560537	1q31	Rattus norvegicus kelch-like 25 (Drosophila) (Klhl25), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC116251; RGD1310815	MGC116251; RGD1310815
Rattus norvegicus	RefSeq	GI_25453395-S	ILMN_272293	COQ7	NM_012785.1	NM_012785.1		25249	25453395	NM_012785.1	Coq7	NP_036917.1	ILMN_1369228	0006380072	S	393	GGTCATTAAGCAATTTCGAGATGAGGAGCTTGAGCACCACGACACAGGCC	1	-	176742408-176742457	1q35	Rattus norvegicus coenzyme Q7 homolog, ubiquinone (yeast) (Coq7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IGI]; The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme [goid 6744] [evidence IEA]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652925-S	ILMN_48205	RGD1306274	XM_235561.4	XM_235561.4		315218	109481144	XM_235561.4	RGD1306274	XP_235561.3	ILMN_1351140	0006220050	S	2497	CGCTAGTCACCTTCTACTCTCTTGGCAACCAACCCAGAGTGGGCCTGTGG	7	-	127646347-127646396	7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein BC002942 (RGD1306274), mRNA.					
Rattus norvegicus	RefSeq	GI_62641735-S	ILMN_276631	SF3B2_PREDICTED	XM_001073034.1	XM_001073034.1		293671	109463369	XM_001073034.1	Sf3b2_predicted	XP_001073034.1	ILMN_1363457	0005290070	S	2347	CAGTTGTTCACTGTATTGCCAGAGAAGAGGACAGCCACTGTTGGTGGGGC				1q43	PREDICTED: Rattus norvegicus splicing factor 3b, subunit 2 (predicted) (Sf3b2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664058-S	ILMN_51384	MTMR1_PREDICTED	XM_228644.4	XM_228644.4		317296	109506272	XM_228644.4	Mtmr1_predicted	XP_228644.4	ILMN_1365627	0002350451	S	3238	CGTCTCCGGGAAAAGAGATGGGCAACGCCCCCAGCCTTAAAAAGCATACG	18	+	238750-238799	18p13	PREDICTED: Rattus norvegicus myotubularin related protein 1 (predicted) (Mtmr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664013-S	ILMN_51384	MTMR1_PREDICTED	XM_228644.4	XM_228644.4		317296	109506272	XM_228644.4	Mtmr1_predicted	XP_228644.4	ILMN_1369377	0000580019	S	1889	ATTACTACGTACGGTGGAACCCACGGATGAGGCCGCAGATGCCGATCCAC	18	+	236289-236326:237439-237450	18p13	PREDICTED: Rattus norvegicus myotubularin related protein 1 (predicted) (Mtmr1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642514-S	ILMN_68106	TDRD1_PREDICTED	XM_217641.4	XM_217641.4		292129	109460280	XM_217641.4	Tdrd1_predicted	XP_217641.4	ILMN_1360935	0000110053	S	3145	TCACTTGAGGGGCTGACGGAGCTGAACGGAAGCAGTTCGCAGCCAGTGAT	1	+	263168779-263168788:263169993-263170032	1q55	PREDICTED: Rattus norvegicus tudor domain containing 1 (predicted) (Tdrd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56961647-S	ILMN_272668	CYGB	NM_130744.2	NM_130744.2		170520	56961647	NM_130744.2	Cygb	NP_570100.1	ILMN_1358401	0002640278	S	1652	ACTGACTTGCTCCGGAAAGGGGCACACCGAGAATTCAGGAGACCCCAGTG	10	-	106760295-106760344	10q32.3	Rattus norvegicus cytoglobin (Cygb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence NAS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]	Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IDA]; Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Staap; Stap; MGC95105	Staap; Stap; MGC95105
Rattus norvegicus	RefSeq	GI_62653742-S	ILMN_264463	LSM16_PREDICTED	XM_001072079.1	XM_001072079.1		315708	109484754	XM_001072079.1	Lsm16_predicted	XP_001072079.1	ILMN_1362949	0003780088	S	500	CCCTCAGAGCATCCCTAAGAGGACAGATATGAAGAGCCAGGACGTTGCCA				8q24	PREDICTED: Rattus norvegicus LSM16 homolog (EDC3, S. cerevisiae) (predicted), transcript variant 1 (Lsm16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653744-S	ILMN_264463	LSM16_PREDICTED	XM_001072079.1	XM_001072079.1		315708	109484754	XM_001072079.1	Lsm16_predicted	XP_001072079.1	ILMN_1360744	0001850400	S	1706	GCCTGTATTCCCTGCACTTCCGCCGCCAGACCCACCAAGGGACGCCTTAA				8q24	PREDICTED: Rattus norvegicus LSM16 homolog (EDC3, S. cerevisiae) (predicted), transcript variant 1 (Lsm16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717784-S	ILMN_47820	LOC367378	XM_346114.2	XM_346114.2		367378	62717784	XM_346114.2	LOC367378	XP_346115.2	ILMN_1358475	0005420041	S	370	GCGTGGTCTGGAGAGGCAATATGTCAGTATTGAGGGCACCCAGACATCAG					PREDICTED: Rattus norvegicus similar to nidogen 2 protein (LOC367378), mRNA.					
Rattus norvegicus	RefSeq	GI_62664232-S	ILMN_51289	RGD1309263_PREDICTED	XM_214574.4	XM_214574.4		291661	109506451	XM_214574.4	RGD1309263_predicted	XP_214574.4	ILMN_1354787	0003450154	S	1937	GGCAAAGCATGAAGTGTCTCCACTGAGGACTGAACAAGCCCACCAGAACC	18	+	29442022-29442071	18p11	PREDICTED: Rattus norvegicus similar to hypothetical protein PRO1580 (predicted) (RGD1309263_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664230-S	ILMN_51289	RGD1309263_PREDICTED	XM_214574.4	XM_214574.4		291661	109506451	XM_214574.4	RGD1309263_predicted	XP_214574.4	ILMN_1367824	0003940114	S	1084	CTTTCTCCAGTTCTTCCTTCAGAAACAGCCCGCCTTGCTACCTGAGGGCC	18	+	29439371-29439420	18p11	PREDICTED: Rattus norvegicus similar to hypothetical protein PRO1580 (predicted) (RGD1309263_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661546-S	ILMN_270251	RGD1565170_PREDICTED	XM_001060945.1	XM_001060945.1		498523	109502490	XM_001060945.1	RGD1565170_predicted	XP_001060945.1	ILMN_2040221	0002750615	S	15	AAGATGGCGCCTAAAGCGAAGAAGGAAGCTCCTGCCCCTCCCAAAGCCGA				15p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (predicted) (RGD1565170_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658652-S	ILMN_280460	RGD1564846_PREDICTED	XR_009022.1	XR_009022.1		363885	109496760	XR_009022.1	RGD1564846_predicted		ILMN_1358340	0000840427	S	565	GAAGCAGCAGTTGACTAATGAAACCACTCGAGTCAGAGCGGACAATCAGC				12q11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310015N07 (predicted) (RGD1564846_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650786-S	ILMN_54447	NIN_PREDICTED	XM_216723.4	XM_216723.4		299117	109478248	XM_216723.4	Nin_predicted	XP_216723.4	ILMN_1359762	0006370142	S	6611	GAGCTTGACAACAGGACCTCCGAACCCAACACAGTGCAGGGAAGCCAGGA	6	-	92134009-92134020:92137287-92137324	6q24	PREDICTED: Rattus norvegicus ninein (predicted) (Nin_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659871-S	ILMN_52903	RGD1565589_PREDICTED	XM_573529.2	XM_573529.2		498301	109498283	XM_573529.2	RGD1565589_predicted	XP_573529.1	ILMN_1368070	0006770577	S	1619	CGCCTCAGACGATGGCACTGTTAGAATATGGGGACCAGCGCCTTTCATAG	13	-	96952170-96952219	13q26	PREDICTED: Rattus norvegicus similar to myocardial ischemic preconditioning upregulated protein 2 (predicted) (RGD1565589_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_32140193-S	ILMN_287390	KISS1	NM_181692.1	NM_181692.1		289023	32140193	NM_181692.1	Kiss1	NP_859043.1	ILMN_1366605	0006590047	S	44	TGGCCTCTTTTGGGGAGCCACTGGCAAAAATGGCACCTGTGGTGAACCCT	13	+	46244829-46244878	13q13	Rattus norvegicus KiSS-1 metastasis-suppressor (Kiss1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of luteinizing hormone [goid 33686] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of luteinizing hormone [goid 33686] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IDA]; The process which controls the timing of the type of sexual cycle seen in female mammals [goid 60112] [evidence IMP]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence IDA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a kisspeptin receptor [goid 31773] [evidence IPI]	Eseptin	Eseptin
Rattus norvegicus	RefSeq	GI_62653605-S	ILMN_61527	LOC363055	XM_343383.2	XM_343383.2		363055	62653605	XM_343383.2	LOC363055	XP_343384.2	ILMN_1354219	0005670292	S	4027	ATGATTGCTGGTTGAAACTAAGGTGTTACTCGGCGCTGGGGGCCACTCTG				8q22	PREDICTED: Rattus norvegicus similar to KIAA1052 protein (LOC363055), mRNA.					
Rattus norvegicus	RefSeq	GI_62655116-S	ILMN_280596	ALS2CR7_PREDICTED	XM_001069526.1	XM_001069526.1		301439	109487209	XM_001069526.1	Als2cr7_predicted	XP_001069526.1	ILMN_1366729	0005130154	S	1068	GGGTGGGGTTCCTGAAGCTGAAGACTTGGCCTCCCAGATGCTAAAAGGCT					PREDICTED: Rattus norvegicus amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 7 (predicted) (Als2cr7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527564-S	ILMN_282303	ARHGDIB	NM_001009600.1	NM_001009600.1		362456	57527564	NM_001009600.1	Arhgdib	NP_001009600.1	ILMN_1372349	0003850075	S	961	GCCAGGAAACGGGCAAGCTGTTGCTCATGGCTCCGTGGCCTTCTGTTCAG	4	-	173967961-173968010	4q43	Rattus norvegicus Rho, GDP dissociation inhibitor (GDI) beta (Arhgdib), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding [goid 5094] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC108926	MGC108926
Rattus norvegicus	RefSeq	GI_6981413-S	ILMN_276793	PRP15	NM_012632.1	NM_012632.1		24687	6981413	NM_012632.1	Prp15	NP_036764.1	ILMN_2040151	0002360437	S	486	CGGCAGACCACAGGGATCTTTCCAGAGTTTGGGTCCTCAGTAAACCAGAA	4	-	169851533-169851540:169851541-169851582	4q42	Rattus norvegicus proline-rich protein 15 (Prp15), mRNA.				RATRP13; Prpb; Prp; Rp13	RATRP13; Prpb; Prp; Rp13
Rattus norvegicus	RefSeq	GI_13928781-S	ILMN_284626	GHRH	NM_031577.1	NM_031577.1		29446	13928781	NM_031577.1	Ghrh	NP_113765.1	ILMN_1352284	0000070671	S	417	CCATTTGGACAGAGTGTGGGCAGAGGACAAGCAGATGGCCCTGGAGAGCA	3	-	148029995-148030044	3q42	Rattus norvegicus growth hormone releasing hormone (Ghrh), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IEA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence ISS]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence TAS]; The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus [goid 21984] [evidence IEA]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence ISS]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence IDA]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence IMP]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30816] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat [goid 32094] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence IEA]; All sleep stages in the circadian sleep/wake cycle other than REM sleep. These stages are characterized by a slowing of brain waves and other physiological functions [goid 42748] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence ISS]; Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell or group of cells [goid 60124] [evidence IEA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA];  [goid 16608] [evidence IDA]; Interacting selectively with a growth hormone-releasing hormone receptor [goid 31770] [evidence ISS]; Interacting selectively with a growth hormone-releasing hormone receptor [goid 31770] [evidence IC ]; Interacting selectively with a growth hormone-releasing hormone receptor [goid 31770] [evidence ISS]; Interacting selectively with a growth hormone-releasing hormone receptor [goid 31770] [evidence IEA]	GHRF	GHRF
Rattus norvegicus	RefSeq	GI_62646944-S	ILMN_65928	RGD1564459_PREDICTED	XM_342652.3	XM_342652.3		362331	109471842	XM_342652.3	RGD1564459_predicted	XP_342653.3	ILMN_1365159	0003170735	S	2994	GCTGAAGGAGGAGCTGGAGTACTGTGAGAAGGAGTTGAAGGAGTGCATGG	4	+	56298048-56298097	4q22	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434G156 (predicted) (RGD1564459_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758609-S	ILMN_299400	PKIA	NM_053772.1	NM_053772.1		114906	16758609	NM_053772.1	Pkia	NP_446224.1	ILMN_1374053	0002480338	S	879	GGGCTGCCTTTTTAATTTCCCATAGTGTTGTGGTGTGCACGGGGCAGAAC	2	-	96524652-96524701	2q23	Rattus norvegicus protein kinase (cAMP-dependent, catalytic) inhibitor alpha (Pkia), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence TAS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence IEA]; Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle [goid 10389] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus [goid 42308] [evidence ISS]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence ISS]	Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence IEA]; Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence ISS]; Stops, prevents or reduces the activity of a cAMP-dependent protein kinase [goid 4862] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653746-S	ILMN_265075	SEMA7A_PREDICTED	XM_001072477.1	XM_001072477.1		315711	109484762	XM_001072477.1	Sema7a_predicted	XP_001072477.1	ILMN_1374790	0005270400	S	3040	CCAGGGGCTGTGCTTCCATGCTCCTAACCTCCCACCTTCAGCTCAGGACA				8q24	PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A (predicted) (Sema7a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667080-S	ILMN_274670	RGD1561690_PREDICTED	XR_007464.1	XR_007464.1		302397	109512133	XR_007464.1	RGD1561690_predicted		ILMN_1351918	0004760113	S	1520	TGCTCAGGCAGTGTTTCAGTACCAGCTATCCTTCCCCGAAAGCCAAAGGC				Xq31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110008J03 (predicted) (RGD1561690_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650369	ILMN_56028	RGD1311049_PREDICTED	XM_216642.3	XM_216642.3		298801	62650369	XM_216642.3	RGD1311049_predicted	XP_216642.3	ILMN_1649847	0003870707	S	2610	GGTTAGACCAAGCCGAGTGACCTACCGAGGGATTAACGGGTCAAAGCTCA				6q13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4833417L20 (predicted) (RGD1311049_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12083596-S	ILMN_285351	SLCO2A1	NM_022667.1	NM_022667.1		24546	12083596	NM_022667.1	Slco2a1	NP_073158.1	ILMN_1364470	0000940079	S	2510	GCAGGTAGTTGGTTTCTTATCTGCTCCAGCGGGGCTAAGGGAGCTGGGTG	8	+	108098332-108098381	8q32	Rattus norvegicus solute carrier organic anion transporter family, member 2a1 (Slco2a1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of prostaglandins into, out of, within or between cells [goid 15732] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of prostaglandins from one side of the membrane to the other. A prostaglandin is any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 15132] [evidence ISS]	Slc21a2; Matr1	Slc21a2; Matr1
Rattus norvegicus	RefSeq	GI_47577342-S	ILMN_266778	OLR422	NM_001000390.1	NM_001000390.1		296684	47577342	NM_001000390.1	Olr422	NP_001000390.1	ILMN_1363903	0000050465	S	219	GACAACCATTACTGTTCCTCAAATGCTGGTGCACACACTCTCCGTGGATC	3	-	16520436-16520485	3q11	Rattus norvegicus olfactory receptor 422 (Olr422), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr422	Olr422
Rattus norvegicus	RefSeq	GI_62657760-S	ILMN_295508	RGD1562187_PREDICTED	XR_007553.1	XR_007553.1		288211	109494194	XR_007553.1	RGD1562187_predicted		ILMN_1353286	0005340504	S	825	CTGTAAGTGCGCTGGGAATGCACTACTGTATGAAGGTGTGGGCACCGCTG				11q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110059P08 (predicted) (RGD1562187_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758495-S	ILMN_269183	S100A3	NM_053681.1	NM_053681.1		114216	16758495	NM_053681.1	S100a3	NP_446133.1	ILMN_1365068	0002470408	S	356	CTGGTCCAAAGGCGTATGCTATCCCAGAAGGGCCAGGTCTGCTTCAGTGC	2	+	182883508-182883557	2q34	Rattus norvegicus S100 calcium binding protein A3 (S100a3), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_60223064-S	ILMN_272687	ENPP7	NM_001012466.1	NM_001012466.1		303729	60223064	NM_001012466.1	Enpp7	NP_001012484.1	ILMN_1369957	0007100181	S	1222	CTGCAACCCATGCTCCGGTCAGGATCTCCGCTCAGCAGGCAGCACCACTT	Un|NW_047902.1	+	32042-32063:32328-32355		Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 7 (Enpp7), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine, any of a class of phospholipids in which the amino group of sphingosine is in amide linkage with one of several fatty acids, while the terminal hydroxyl group of sphingosine is esterified to phosphorylcholine [goid 6684] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication [goid 8156] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IEA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639628-S	ILMN_269045	KLK1C10	XM_001080455.1	XM_001080455.1		292858	109461842	XM_001080455.1	Klk1c10	XP_001080455.1	ILMN_1362223	0004070398	S	450	CCTTGTCTCAGGCTGGGGCAGCACAAAACCCCTTATATCAGAATTACCAG				1q22	PREDICTED: Rattus norvegicus T-kininogenase (Klk1c10), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639626-S	ILMN_269045	KLK1C10	XM_001080455.1	XM_001080455.1		292858	109461842	XM_001080455.1	Klk1c10	XP_001080455.1	ILMN_1362009	0000360040	S	1454	CGTGGGGCAATGTCCCATGTGCTGAACCCTATAACCCAGGTGTCTACACT				1q22	PREDICTED: Rattus norvegicus T-kininogenase (Klk1c10), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981441-S	ILMN_288505	PTPN1	NM_012637.1	NM_012637.1		24697	6981441	NM_012637.1	Ptpn1	NP_036769.1	ILMN_1355065	0003390010	S	3987	CTCTGGAATAGCACCTTTGCAGGAGCGGGGGGTGTCTCAGGGTCTTCTGT	3	+	159119021-159119070	3q42	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 1 (Ptpn1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence NAS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IMP]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; Any process that modulates the frequency, rate or extent of insulin receptor signaling [goid 46626] [evidence IMP]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IMP]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Interacting selectively with the insulin receptor [goid 5158] [evidence IDA]; Interacting selectively with the insulin receptor [goid 5158] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC93562; Ptp	MGC93562; Ptp
Rattus norvegicus	RefSeq	GI_34874908	ILMN_67181	LOC364348	XM_344371.1	XM_344371.1		364348	34874908	XM_344371.1	LOC364348	XP_344372.1	ILMN_1650064	0004150184	S	81	GGGTCCTAAGGGGCCCAATTCCAACAATGTTTGGTTCACACTTCCACAGG					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 6 (LOC364348), mRNA.					
Rattus norvegicus	RefSeq	GI_62652328-S	ILMN_63831	LOC299981	XM_238503.2	XM_238503.2		299981	62652328	XM_238503.2	LOC299981	XP_238503.1	ILMN_1366026	0003850056	S	56	GCCATCCCAGTCCTCAAAGGTCAGCACTTTCATCCTTCTGGAGAGGCACA					PREDICTED: Rattus norvegicus hypothetical LOC299981 (LOC299981), mRNA.					
Rattus norvegicus	RefSeq	GI_62645902-S	ILMN_58388	RNF24_PREDICTED	XM_342522.3	XM_342522.3		362218	109468845	XM_342522.3	Rnf24_predicted	XP_342523.3	ILMN_1373809	0007050066	S	672	TGCTGCAAGGATCAGACTGTCGCTGGACACATCAGTACGGAGCCAGGAGG	3	-	119011770-119011819	3q36	PREDICTED: Rattus norvegicus ring finger protein 24 (predicted) (Rnf24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638624-S	ILMN_58907	RGD1561706_PREDICTED	XM_344825.3	XM_344825.3		365122	109457822	XM_344825.3	RGD1561706_predicted	XP_344826.3	ILMN_1357415	0002320021	S	1496	GGAGGAAGAAGGTCCACTGTGGCTTGTCGTCTCAGGCCACTACCAATGAC	1	+	50432802-50432851	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1561706_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13489070-S	ILMN_295936	CDKL3	NM_021772.1	NM_021772.1		60396	13489070	NM_021772.1	Cdkl3	NP_068540.1	ILMN_1357922	0000630717	S	1285	GCAGGGCACAGCTGAGGACACACACCCCACATCACTGGACAGGAAGCCTT	10	+	37552405-37552454	10q22	Rattus norvegicus cyclin-dependent kinase-like 3 (Cdkl3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Nkiatre; Nkiatreb	Nkiatre; Nkiatreb
Rattus norvegicus	RefSeq	GI_62657963-A	ILMN_287601	DIRC2	NM_001012017.1	NM_001012017.1		303902	58865603	NM_001012017.1	Dirc2	NP_001012017.1	ILMN_1376332	0002470500	S	2420	GTGCTGGCACAAGTGTGAAGTCCAGCGCCCACTGTAACTTACCAGGTTAG	11	+	66909948-66909997	11q22	Rattus norvegicus disrupted in renal carcinoma 2 (human) (Dirc2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62644494-S	ILMN_269219	LOC295496	XM_001076299.1	XM_001076299.1		295496	109467620	XM_001076299.1	LOC295496	XP_001076299.1	ILMN_1354619	0002630671	S	932	GGCAAGAGGCGTTTTTTACAATCTTACCCCCACGGAAAGGAGCTGTCCCC				2q44	PREDICTED: Rattus norvegicus similar to RNA (guanine-9-) methyltransferase domain containing 2 (LOC295496), mRNA.					
Rattus norvegicus	RefSeq	GI_13489066-S	ILMN_277157	NSF	NM_021748.1	NM_021748.1		60355	13489066	NM_021748.1	Nsf	NP_068516.1	ILMN_1363930	0003170131	S	2590	GGTTCCAAGGGATTCGCTTAGCACTCCCCGTGTTAACAACCATGTGGCCC	10	-	92974480-92974529	10q32.1	Rattus norvegicus N-ethylmaleimide sensitive fusion protein (Nsf), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence TAS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; Fusion of the membrane of a transport vesicle with its target membrane [goid 6906] [evidence TAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the hydrolysis of peptide bonds [goid 4176] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IPI]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive some other reaction, for example ion transport across a membrane [goid 42623] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655520-S	ILMN_274459	RGD1559865_PREDICTED	XM_001053600.1	XM_001053600.1		367339	109487614	XM_001053600.1	RGD1559865_predicted	XP_001053600.1	ILMN_1356788	0006900133	S	423	AGCGCTCCAGCTAAGGCCCAGGCCAAAAGGTGAAGGTCCCATAGAACAGG				9q37	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1559865_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664567	ILMN_64756	CEP76	XM_214549.4	XM_214549.4		291540	109506734	XM_214549.4	Cep76	XP_214549.4	ILMN_1650325	0005700338	S	2496	CTGGCAGTTCGTGTTCGAGTGTTTACCTACCCTGAGTCTGCGTGTGCTGT	18	-	64157628-64157677	18q12.1	PREDICTED: Rattus norvegicus centrosomal protein 76 (Cep76), mRNA.					
Rattus norvegicus	RefSeq	GI_31377481-S	ILMN_276563	TIMP2	NM_021989.2	NM_021989.2		29543	31377481	NM_021989.2	Timp2	NP_068824.1	ILMN_1369398	0005050040	S	1519	CCTGTGGTGAGGGGTGCTTGGCTGTCCTCGTAATCACTCTCAAGGTTCCC	10	-	108310565-108310614	10q32.3	Rattus norvegicus TIMP metallopeptidase inhibitor 2 (Timp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30814] [evidence ISS]; Any process that modulates the frequency, rate or extent of Rap protein signal transduction [goid 32487] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade [goid 43408] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; Any process that modulates the frequency, rate or extent of neuron differentiation [goid 45664] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of adenylate cyclase activity [goid 45762] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein [goid 45861] [evidence IMP]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence IDA]	Stops, prevents or reduces the activity of an enzyme [goid 4857] [evidence IEA]; Interacting selectively with an integrin [goid 5178] [evidence IPI]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence IMP]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence IEA]; Stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity [goid 8191] [evidence ISS]	MGC105282	MGC105282
Rattus norvegicus	RefSeq	GI_62655616	ILMN_62958	LOC363532	XM_343851.2	XM_343851.2		363532	62655616	XM_343851.2	LOC363532	XP_343852.2	ILMN_1650809	0001190408	S	1881	GACCGTTCACACTTACATCTTGCGTAGCAACCAACAGCTCTGGCCACCTG				10q11	PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC363532), mRNA.					
Rattus norvegicus	RefSeq	GI_12018303-S	ILMN_289250	SPEF2	NM_022620.1	NM_022620.1		64555	12018303	NM_022620.1	Spef2	NP_072142.1	ILMN_1366048	0002360138	S	5242	GCATGCACAAGGCAGTGATGGAGAAAGGTCACCCTCAAGACTTACAGACG				2q16	Rattus norvegicus sperm flagellar 2 (Spef2), mRNA.					
Rattus norvegicus	RefSeq	GI_62647076-S	ILMN_49264	LOC502745	XM_578244.1	XM_578244.1		502745	62647076	XM_578244.1	LOC502745	XP_578244.1	ILMN_1349552	0005360546	S	2750	CCGGAGACAGAGTAGACAAGGGCAACAGCAGAAGGGAGTTCAGACTCGCA				4q22	PREDICTED: Rattus norvegicus similar to mucin 17 (LOC502745), mRNA.					
Rattus norvegicus	RefSeq	GI_8394068-S	ILMN_291693	PSMA4	NM_017281.1	NM_017281.1		29671	8394068	NM_017281.1	Psma4	NP_058977.1	ILMN_1366901	0006380333	S	900	ATAACTCCTTAGAGGCGCCAGTTCACTTAGGAGCTGTCCTGGCCTTCCCC	8	+	58515882-58515931	8q24	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 4 (Psma4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657794-S	ILMN_48642	ZBTB11_PREDICTED	XM_221562.4	XM_221562.4		304010	109493070	XM_221562.4	Zbtb11_predicted	XP_221562.3	ILMN_1368088	0001500193	S	2947	GAGACCGTGGTGGTGACGGGAGAGACTATGGAAGTTCTTGAAGCTGTGGC	11	-	45592914-45592963	11q12	PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 11 (predicted) (Zbtb11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718680-S	ILMN_53128	LOC503393	XM_578931.1	XM_578931.1		503393	62718680	XM_578931.1	LOC503393	XP_578931.1	ILMN_1368025	0000060253	S	10	AGCTGAAACTTAACGGAATTGACAGAAGGGCACCACCAGATGTCCGGGGC					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503393), mRNA.					
Rattus norvegicus	RefSeq	GI_62664971-S	ILMN_47959	LOC316826	XM_229259.3	XM_229259.3		316826	62664971	XM_229259.3	LOC316826	XP_229259.3	ILMN_1353088	0007100685	S	1298	GGGTATCTGGGTTCTAGGGTTGTTAGTGGGACTTGGAAACGCTGGGAGAG					PREDICTED: Rattus norvegicus similar to protein phosphatase 1 (LOC316826), mRNA.					
Rattus norvegicus	RefSeq	GI_62651626-S	ILMN_263392	RGD1561549_PREDICTED	XR_008909.1	XR_008909.1		500759	109515382	XR_008909.1	RGD1561549_predicted		ILMN_1360140	0006650088	S	485	CCTACCGCATCAGGTGCTTTCACCTCCTGAGTGAGTTCTGTCAGTTGAAG				7q11	PREDICTED: Rattus norvegicus similar to Spetex-2D (predicted) (RGD1561549_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655149-S	ILMN_68907	KLF7_PREDICTED	XM_343581.3	XM_343581.3		363243	109486118	XM_343581.3	Klf7_predicted	XP_343582.2	ILMN_1349559	0001740605	S	3278	CACATATGACAGCAGCCTTCAAGATCCTTGGCACTTGGGTTCTCTCTCAG	9	-	62690871-62690920	9q32	PREDICTED: Rattus norvegicus Kruppel-like factor 7 (ubiquitous) (predicted) (Klf7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978674-S	ILMN_293359	CNTF	NM_013166.1	NM_013166.1		25707	6978674	NM_013166.1	Cntf	NP_037298.1	ILMN_1349254	0004810292	S	657	GGGGCCAAAGATAAGCAGATGTAGCCATTCGCTCATACCTCTGTCTCCCT	1	-	215843055-215843081:215843082-215843104	1q43	Rattus norvegicus ciliary neurotrophic factor (Cntf), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; All of the contents of a cell projection, excluding the plasma membrane surrounding the projection [goid 32838] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphoinositide 3-kinase cascade [goid 14068] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IDA]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42517] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42517] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46427] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of photoreceptor cell differentiation [goid 46533] [evidence IEA]; Any process that modulates the frequency, rate or extent of programmed cell death that occurs in the retina [goid 46668] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IDA]; A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 48143] [evidence IDA]; The process by which the anatomical structures of muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 48644] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; Any process that activates, maintains or increases the rate of axon regeneration [goid 48680] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; Any process that modulates the establishment or extent of a resting potential, the electrical charge across the plasma membrane, with the interior of the cell negative with respect to the exterior. The resting potential is the membrane potential of a cell that is not stimulated to be depolarized or hyperpolarized [goid 60075] [evidence IDA]; The process in which membrane potential changes in the hyperpolarizing direction from the resting potential, usually from negative to more negative [goid 60081] [evidence IDA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IDA]; Interacting selectively with the ciliary neurotrophic factor receptor [goid 5127] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865449-A	ILMN_300328	BAG3	NM_001011936.1	NM_001011936.1		293524	58865449	NM_001011936.1	Bag3	NP_001011936.1	ILMN_1376646	0003390433	S	2059	GCCTTGGCTGTGGGCTGTCTTCCTGTTAGCTCTGGACCGTAGGGGGTTTT	1	+	187804566-187804615	1q36	Rattus norvegicus Bcl2-associated athanogene 3 (Bag3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577132-S	ILMN_302252	OLR611	NM_001000926.1	NM_001000926.1		405245	47577132	NM_001000926.1	Olr611	NP_001000926.1	ILMN_1373440	0000840722	S	891	GGATGTGAAGGATACCGTCAGGAGACTCATCAGCTCAAAACTTAACTCCC	3	-	71954688-71954737	3q24	Rattus norvegicus olfactory receptor 611 (Olr611), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr611	Olr611
Rattus norvegicus	RefSeq	GI_62661103-S	ILMN_58957	LOC501957	XM_577384.1	XM_577384.1		501957	62661103	XM_577384.1	LOC501957	XP_577384.1	ILMN_1354685	0001230575	S	49	CCGTGGAATACTCTCGATCGGCGATGGACGTCTGGGATCCCTGTGAATGT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (LOC501957), mRNA.					
Rattus norvegicus	RefSeq	GI_62718750-S	ILMN_57669	LOC503410	XM_578949.1	XM_578949.1		503410	62718750	XM_578949.1	LOC503410	XP_578949.1	ILMN_1369929	0003140750	S	89	GAGGATGTATCCTGATGACCACAAAGCAGTTGGTGGAGCGATATGTCTGG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503410), mRNA.					
Rattus norvegicus	RefSeq	GI_47577308-S	ILMN_291030	OLR410	NM_001000969.1	NM_001000969.1		405322	47577308	NM_001000969.1	Olr410	NP_001000969.1	ILMN_1360498	0000580075	S	655	GGTCACATAGGGGCCACTATCCTAAGAACTCCAACCATCCAGGGTATCTG	3	+	16311287-16311336	3p11	Rattus norvegicus olfactory receptor 410 (Olr410), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr410	Olr410
Rattus norvegicus	RefSeq	GI_18426837-S	ILMN_284423	SKAP2	NM_130413.1	NM_130413.1		155183	18426837	NM_130413.1	Skap2	NP_569097.1	ILMN_1363777	0004280671	S	1306	GCGCTTTGGAACACAGACTGCCTGGAGCCACCTTCCTTTGGGAGACCTTC	4	-	80150118-80150167	4q24	Rattus norvegicus src kinase associated phosphoprotein 2 (Skap2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42113] [evidence IEA]		Scap55r	Scap55r
Rattus norvegicus	RefSeq	GI_62717736-S	ILMN_67933	LOC301786	XM_229255.3	XM_229255.3		301786	62717736	XM_229255.3	LOC301786	XP_229255.3	ILMN_1357414	0002190170	S	1384	TGCACAAAACAGACCTCAGGACTGCCCCATTCAGACCTGGCGACTGCCCT					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC301786), mRNA.					
Rattus norvegicus	RefSeq	GI_62648097-S	ILMN_52105	RGD1561056_PREDICTED	XM_575655.2	XM_575655.2		500306	109472522	XM_575655.2	RGD1561056_predicted	XP_575655.2	ILMN_1367624	0003290091	S	3571	ATGGCATCTTCCTACTGCGCTGGGGTGTCAGGCGGGAATGGGTGGGCAGT	4	-	156581238-156581287	4q42	PREDICTED: Rattus norvegicus similar to beta1,4-N-acetylgalactosaminyltransferase III (predicted) (RGD1561056_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644758-S	ILMN_70276	LOC499757	XM_575093.1	XM_575093.1		499757	62644758	XM_575093.1	LOC499757	XP_575093.1	ILMN_1360622	0005360575	S	770	GGTGGAAGGACGTTGGTTTACCATCCAACTGGCCACAAGCCTCAGGGACC					PREDICTED: Rattus norvegicus similar to lipocalin 11 (LOC499757), mRNA.					
Rattus norvegicus	RefSeq	GI_62653561-S	ILMN_290565	TRIM29_PREDICTED	XM_001066075.1	XM_001066075.1		300656	109484578	XM_001066075.1	Trim29_predicted	XP_001066075.1	ILMN_1353347	0002360736	S	2558	TGGTGCTCTTTGAGGTAATGGCCAGCAGGAGGGCTGGGAAGAGTGGTGTC				8q22	PREDICTED: Rattus norvegicus tripartite motif protein 29 (predicted) (Trim29_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955145-S	ILMN_284605	TIMM13	NM_145781.1	NM_145781.1		252928	21955145	NM_145781.1	Timm13	NP_665724.1	ILMN_1366394	0006020181	S	530	GCAGGCCAATAAATCGCTGCTGGGGCAGAAAACCTGGCGTGTCACCTCAC	7	+	10320786-10320835	7q11	Rattus norvegicus translocase of inner mitochondrial membrane 13 homolog (yeast) (Timm13), nuclear gene encoding mitochondrial protein, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane [goid 42719] [evidence IEA]	The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The import of proteins into the mitochondria inner membrane. Inner membrane proteins are first imported into the matrix space where the matrix-targeting sequence is removed; how these proteins then are incorporated into the inner membrane is not known [goid 45039] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Sirt6	Sirt6
Rattus norvegicus	RefSeq	GI_62658646	ILMN_274947	RGD1560412_PREDICTED	XR_008972.1	XR_008972.1		501808	109496687	XR_008972.1	RGD1560412_predicted		ILMN_1650017	0002850685	S	834	TTAGGGGACAAGTGCTGTGGAGCAACGGAGACAGATGGCCGTGGGCAGCG				12q11	PREDICTED: Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (predicted) (RGD1560412_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18158448-S	ILMN_161711	COPB1	NM_080781.2	NM_080781.2		114023	40254735	NM_080781.2	Copb1	NP_542959.1	ILMN_2039866	0005550753	S	2822	GGCTTCATGGCAGCCAACCTATATGCTCGCTCTATATTTGGAGAGGATGC	1	-	172200886-172200935	1q34	Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state [goid 30126] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence TAS]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network) [goid 6891] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat [goid 48205] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rack2	Rack2
Rattus norvegicus	RefSeq	GI_40254735-S	ILMN_161711	COPB1	NM_080781.2	NM_080781.2		114023	40254735	NM_080781.2	Copb1	NP_542959.1	ILMN_1363677	0000110079	S	2882	GTCAGCATTGAGAAGCCAGTTCACCAGGGACCAGATGCTGCTGTTACTGG	1	-	172200826-172200875	1q34	Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state [goid 30126] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence TAS]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network) [goid 6891] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat [goid 48205] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rack2	Rack2
Rattus norvegicus	RefSeq	GI_27692469-S	ILMN_284225	RGD1566337_PREDICTED	XM_227344.1	XM_227344.1		310589	27692469	XM_227344.1	RGD1566337_predicted	XP_227344.1	ILMN_1367497	0000130113	S	509	AAAGGCAGGTGTTGTCTGATGACCTAGGGGAGCTGTGGGAGAATTTCATC	2	+	186845811-186845860	2q34	PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1566337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929179-S	ILMN_270735	FBN2	NM_031826.1	NM_031826.1		689008	13929179	NM_031826.1	Fbn2	NP_114014.1	ILMN_1351076	0005570048	S	8543	GCTACCTGCACACAGCCAAGAAGAAGCTCACTCCCGGCACATACACACTG				18q12.1	Rattus norvegicus fibrillin 2 (Fbn2), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]		The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560102-S	ILMN_283871	CASP8	NM_022277.1	NM_022277.1		64044	11560102	NM_022277.1	Casp8	NP_071613.1	ILMN_1371431	0004810075	S	1674	GTGAGCAATAAAGACAACCCGAGGAACATGGGAAAGCAGATGCCACAGCC	9	+	57437474-57437523	9q31	Rattus norvegicus caspase 8 (Casp8), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A heterodimer associated with 90S and 66S preribosomes in the nucleolus; involved in ribosomal large subunit biogenesis [goid 30690] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system [goid 1841] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_40254759-S	ILMN_293662	CHP	NM_024139.2	NM_024139.2		64152	40254759	NM_024139.2	Chp	NP_077053.1	ILMN_1366289	0005390037	S	2203	TAAAGGCGAGCAGTGGGGGCGTGGCTAGGACAGATGGCTAGGGTCTACAT	3	+	106101325-106101374	3q35	Rattus norvegicus calcium binding protein p22 (Chp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence IDA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence TAS]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence IGI]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Wrch2	Wrch2
Rattus norvegicus	RefSeq	GI_62647722-S	ILMN_57384	DUSP11_PREDICTED	XM_216196.3	XM_216196.3		297412	62647722	XM_216196.3	Dusp11_predicted	XP_216196.3	ILMN_1371020	0000630075	S	1608	GCAGCAGTTCTGGCACAAGAAGACCTCCCTTCCAGGCCTCAACTTTACTC				4q34	PREDICTED: Rattus norvegicus dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) (Dusp11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653188-S	ILMN_270213	AASDHPPT_PREDICTED	XM_217078.3	XM_217078.3		300328	62653188	XM_217078.3	Aasdhppt_predicted	XP_217078.3	ILMN_1355815	0002850039	S	1317	ATTCCCCTACACTGGGGCATCTAGCCTTCACTGGACCAAGGGCCTCTCCT	8	-	847009-847058	8q11	PREDICTED: Rattus norvegicus aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase (predicted) (Aasdhppt_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646615-S	ILMN_50180	LOC499965	XM_575316.1	XM_575316.1		499965	62646615	XM_575316.1	LOC499965	XP_575316.1	ILMN_1355969	0000670017	S	1021	TGTTTCTACAAATCCAGCACTACAAAGGATAATAAATGGTAAAGCCCAAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499965), mRNA.					
Rattus norvegicus	RefSeq	GI_62661308-S	ILMN_51756	PARP2_PREDICTED	XM_214157.4	XM_214157.4		290027	109501549	XM_214157.4	Parp2_predicted	XP_214157.3	ILMN_1373264	0006130692	S	1393	CTGTCAGAGGTAGCTCTGGGTCAGTGTAATGAACTGCTGGAGGCCAACCC	15	+	26800344-26800352:26800577-26800617	15p14	PREDICTED: Rattus norvegicus poly (ADP-ribose) polymerase family, member 2 (predicted) (Parp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661442-S	ILMN_268490	LRP10	NM_001037777.1	NM_001037777.1		305880	83649704	NM_001037777.1	Lrp10	NP_001032866.1	ILMN_1362070	0006590112	S	2557	TCTGTGGAAGTGGTTCAGAAAGTTAGTGTCCCTCGAGCAGGGAGAGCGCT	15	+	32533198-32533247	15p13	Rattus norvegicus low-density lipoprotein receptor-related protein 10 (Lrp10), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]	MGC124814	MGC124814
Rattus norvegicus	RefSeq	GI_62653800-S	ILMN_272054	RGD1309779_PREDICTED	XM_001075851.1	XM_001075851.1		363074	109484852	XM_001075851.1	RGD1309779_predicted	XP_001075851.1	ILMN_1367540	0002320575	S	171	TTCTGCGTGCCCTACAGTGCGGTCCACAACGACCAGTTCGGCCTTTCGCA				8q24	PREDICTED: Rattus norvegicus similar to ENSANGP00000021391 (predicted) (RGD1309779_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655185-S	ILMN_48211	LOC367293	XM_346060.2	XM_346060.2		367293	62655185	XM_346060.2	LOC367293	XP_346061.2	ILMN_1373302	0000630725	S	647	CAGCAAAAAAGTGTGCCTGAGCCTCCAGAGAGTTGTCTGTTTCCCATAAC					PREDICTED: Rattus norvegicus similar to NEDD8-conjugating enzyme (LOC367293), mRNA.					
Rattus norvegicus	RefSeq	GI_62666236-S	ILMN_64490	LOC502466	XM_577946.1	XM_577946.1		502466	62666236	XM_577946.1	LOC502466	XP_577946.1	ILMN_1368163	0000670059	S	869	ACTGGCTGCCACCGACTGTGTTTCCAAGGAATCACGAGTTATAGCGGCCC				20q12	PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502466), mRNA.					
Rattus norvegicus	RefSeq	GI_62663953-S	ILMN_280162	RGD1563344_PREDICTED	XM_001074167.1	XM_001074167.1		498803	109506227	XM_001074167.1	RGD1563344_predicted	XP_001074167.1	ILMN_1356516	0001400450	S	2134	AAGACAGTACCAGGCCTTACTTGAATAGAAGTCTGCTATCCGCGGATGGC				17q12.3	PREDICTED: Rattus norvegicus similar to OTU domain containing 1 (predicted) (RGD1563344_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642572-S	ILMN_48265	LOC502396	XM_577876.1	XM_577876.1		502396	62642572	XM_577876.1	LOC502396	XP_577876.1	ILMN_1361021	0003140129	S	416	AATACCGAGGCCCCCACTGCAAAAGCGCATACCCAACGGAACCATACCGG					PREDICTED: Rattus norvegicus similar to deaminase domain containing 1 (LOC502396), mRNA.					
Rattus norvegicus	RefSeq	GI_62639906-S	ILMN_281319	RGD1560730_PREDICTED	XR_009415.1	XR_009415.1		292928	109461993	XR_009415.1	RGD1560730_predicted		ILMN_1357035	0005050441	S	683	GCCTGCTCTTTGGCATTCCCTTTGGGATATACTGGATGGTTGACCAATGG				1q22	PREDICTED: Rattus norvegicus similar to MrgB3 G protein-coupled receptor (predicted) (RGD1560730_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_25282392-S	ILMN_272961	MCPT2	NM_172044.1	NM_172044.1		29266	25282392	NM_172044.1	Mcpt2	NP_742041.1	ILMN_1369734	0005270050	S	564	GGGCAGTCCCACAACTTTAAGAGCAGCATTCATGGGAGACTCTGGCGGAC	15	+	34557869-34557902:34558267-34558282	15p12	Rattus norvegicus mast cell protease 2 (Mcpt2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16258824-S	ILMN_273162	PSP	NM_052808.1	NM_052808.1		50585	16258824	NM_052808.1	Psp	NP_434695.1	ILMN_1349494	0005290524	S	782	GACAACCCCTGCTGGTTAGTCTCCACTGGCTTTATTTTACTTCCGGTGGC	3	+	144402324-144402337:144403333-144403368	3q41	Rattus norvegicus parotid secretory protein (Psp), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]		Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661731-I	ILMN_58058	LCP1_PREDICTED	XM_573816.1	XM_573816.1		306071	62661731	XM_573816.1	Lcp1_predicted	XP_573816.1	ILMN_1376133	0000380288	S	70	CGTCCCAGAAAACAGGTCCCACAGGCCACTTTGACAGCTCTCCTGCTCTG				15q11	PREDICTED: Rattus norvegicus lymphocyte cytosolic protein 1 (predicted) (Lcp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660152-S	ILMN_49954	LOC364104	XM_344212.2	XM_344212.2		364104	62660152	XM_344212.2	LOC364104	XP_344213.2	ILMN_1366688	0007000592	S	1338	ATCTATTGCGGGAGGCGCGCTGCTGCGTCAAAGGTCAAGGGAGAGTATGG					PREDICTED: Rattus norvegicus similar to Rpl24 protein (LOC364104), mRNA.					
Rattus norvegicus	RefSeq	GI_62643250-S	ILMN_61597	LOC294936	XM_238220.2	XM_238220.2		294936	62643250	XM_238220.2	LOC294936	XP_238220.1	ILMN_1366716	0006130070	S	77	CTGCTGGAGTACTTGCACGTTGGGCAAAGAAGGAACATGAGACCACAGCT					PREDICTED: Rattus norvegicus hypothetical LOC294936 (LOC294936), mRNA.					
Rattus norvegicus	RefSeq	GI_62664654-S	ILMN_53089	RGD1308601_PREDICTED	XM_225699.4	XM_225699.4		307249	109506771	XM_225699.4	RGD1308601_predicted	XP_225699.4	ILMN_1352048	0001850438	S	971	ACAGCGAAGTGGAGATTGTGGGTGTCCAGGAGCATGCAAGGTGTGCTCAC	18	-	74589679-74589689:74599263-74599301	18q12.3	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1308601_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663097-S	ILMN_288534	RGD1309729	XM_001058032.1	XM_001058032.1		290946	109460651	XM_001058032.1	RGD1309729	XP_001058032.1	ILMN_1353112	0002690253	S	1878	CCAGGTTGTTCAGGTTCCCTATCATGAGCTGGAGCTGCTTACATCAAGAC				17p14	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC5297 (RGD1309729), mRNA.					
Rattus norvegicus	RefSeq	GI_62646015-S	ILMN_295271	RGD1310753	NM_001025020.1	NM_001025020.1		362235	68163476	NM_001025020.1	RGD1310753	NP_001020191.1	ILMN_1373919	0005690112	S	1028	TTCCAAAGGCTGGCATGAAGGAGGGGGAGCTGAGCCAGATGTATGAGGGC	3	+	139833917-139833966	3q41	Rattus norvegicus similar to chromosome 20 open reading frame 39 (RGD1310753), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62655004-S	ILMN_67685	LOC503255	XM_578789.1	XM_578789.1		503255	62655004	XM_578789.1	LOC503255	XP_578789.1	ILMN_1349089	0003850047	S	74	GGTGGAACTGTCCCAGCTTCACGTCGTCGCCAAAAAATTCTACAAGAGAG				9q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (LOC503255), mRNA.					
Rattus norvegicus	RefSeq	GI_62645435-S	ILMN_271385	TTC17	XM_001078737.1	XM_001078737.1		311224	109470357	XM_001078737.1	Ttc17	XP_001078737.1	ILMN_1365991	0003830070	S	3002	TTGGCAAGGACCAGTACCCTCAGCAGTCGCTTGAACAAATCGGCACCCGA				3q31	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 17 (Ttc17), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652303-S	ILMN_62685	LOC500852	XM_576246.1	XM_576246.1		500852	62652303	XM_576246.1	LOC500852	XP_576246.1	ILMN_1361737	0005700315	S	1085	GATGGAAAACTCCAACACAACGAGAGAAACTACACTGCACAGGAAGCGAG					PREDICTED: Rattus norvegicus similar to LRRGT00099 (LOC500852), mRNA.					
Rattus norvegicus	RefSeq	GI_62645316-S	ILMN_52868	RGD1565385_PREDICTED	XM_342453.3	XM_342453.3		362153	109468343	XM_342453.3	RGD1565385_predicted	XP_342454.2	ILMN_1365533	0000450181	S	2844	CTCTAATGACAACTGGACTCGCCTTACATTCAGTTCAATGTCCTTTTTAC	3	-	60561139-60561188	3q24	PREDICTED: Rattus norvegicus similar to mKIAA1604 protein (predicted) (RGD1565385_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666482-S	ILMN_55411	LOC313433	XM_233309.2	XM_233309.2		313433	62666482	XM_233309.2	LOC313433	XP_233309.2	ILMN_1363965	0004210519	S	1094	GAAAGCGCCCCGACAAACTTTCCCAGCCAGTGTTCATTACTGTAGTCGGC				Xq12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22965 (LOC313433), mRNA.					
Rattus norvegicus	RefSeq	GI_62661676-S	ILMN_275992	NKX3-1	NM_001034144.1	NM_001034144.1		305999	77628001	NM_001034144.1	Nkx3-1	NP_001029316.1	ILMN_1353566	0006770739	S	767	GGGGGTCCCTGGGAAAAAGCCAGAGTGGCTGATGTCAAGGAGTTGAAAGC	15	+	49744890-49744939	15p11	Rattus norvegicus NK3 homeobox 1 (Nkx3-1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whose specific outcome is the progression of the salivary gland over time, from its formation to the mature structure. Salivary glands include any of the saliva-secreting exocrine glands of the oral cavity [goid 7431] [evidence IEA]; The process whose specific outcome is the progression of the salivary gland over time, from its formation to the mature structure. Salivary glands include any of the saliva-secreting exocrine glands of the oral cavity [goid 7431] [evidence ISS]; The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid [goid 30850] [evidence IEA]; The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid [goid 30850] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	MGC124859	MGC124859
Rattus norvegicus	RefSeq	GI_39725718-S	ILMN_293008	GKN1	NM_198972.1	NM_198972.1		297418	39725718	NM_198972.1	Gkn1	NP_945323.1	ILMN_1360124	0000520035	S	460	GCATCCCTACCTATGTGGCTGAGGAGATTCCAGGACCAAACCAGCCTTTG	4	-	121496347-121496364:121497051-121497082	4q34	Rattus norvegicus gastrokine 1 (Gkn1), mRNA.	A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]	Fov; Amp18; Ca11; foveolin	Fov; Amp18; Ca11; foveolin
Rattus norvegicus	RefSeq	GI_34866298-S	ILMN_291358	RGD1308557_PREDICTED	XM_001070358.1	XM_001070358.1		312965	109476101	XM_001070358.1	RGD1308557_predicted	XP_001070358.1	ILMN_1363225	0006180471	S	818	GGCTGGCAGACGGAAGTCGTCTCATACAGAGATTCAACAGCACACACCGG				5q12	PREDICTED: Rattus norvegicus similar to homolog of rat p47 (predicted) (RGD1308557_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647951	ILMN_288357	CLEC4B2	NM_001005896.1	NM_001005896.1		450222	54312117	NM_001005896.1	Clec4b2	NP_001005896.1	ILMN_1650752	0001660280	S	666	CTTACATGTCCTCCATGGCTGTGGGATTGCATTGTGATCTACCAGTACAC	4	+	159769339-159769388	4q42	Rattus norvegicus C-type lectin domain family 4, member b2 (Clec4b2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758529-S	ILMN_276712	KLF4	NM_053713.1	NM_053713.1		114505	16758529	NM_053713.1	Klf4	NP_446165.1	ILMN_1356110	0001050736	S	2065	ACGATGGTGCTTGGTGAGTCGTGGTTCTAAAGGTACCAAACGGGGGAGCC	5	-	73447181-73447230	5q24	Rattus norvegicus Kruppel-like factor 4 (gut) (Klf4), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IDA]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis [goid 9913] [evidence ISS]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process occurring during the post-embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure [goid 31077] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence IDA]; The process by which the anatomical structures of the epidermis are generated and organized. Morphogenesis pertains to the creation of form. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 48730] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]	GKLF; MGC93286	GKLF; MGC93286
Rattus norvegicus	RefSeq	GI_40254777-S	ILMN_263453	NUCB2	NM_021663.2	NM_021663.2		59295	40254777	NM_021663.2	Nucb2	NP_067695.1	ILMN_1354242	0001990546	S	1337	TGCAGCGCCAGCACGACCACCTTGAGGCCCAGAAGCAGGAGTATCAGCAG	1	+	174638103-174638152	1q35	Rattus norvegicus nucleobindin 2 (Nucb2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes [goid 5640] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Nefa; p54	Nefa; p54
Rattus norvegicus	RefSeq	GI_12018287-S	ILMN_278836	IL12B	NM_022611.1	NM_022611.1		64546	12018287	NM_022611.1	Il12b	NP_072133.1	ILMN_1354970	0006380398	S	659	ACTACAGCACCAGCTTCTTCATCAGGGACATCATCAAACCGGACCCACCC	10	+	29565317-29565349:29565940-29565956	10q21	Rattus norvegicus interleukin 12b (Il12b), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence IEA]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence ISS]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence IDA]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence ISS]	The change in morphology and behavior of a natural killer cell resulting from exposure a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response [goid 2323] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target [goid 2860] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target [goid 2860] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer cell activation [goid 32816] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of natural killer cell activation [goid 32816] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of smooth muscle cell apoptosis [goid 34393] [evidence ISS]; The process whereby a relatively unspecialized thymocyte acquires specialized features of a T-helper cell [goid 42093] [evidence IEA]; The process whereby a relatively unspecialized thymocyte acquires specialized features of a T-helper cell [goid 42093] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence IEA]; Any process that activates or increases the rate or extent of activated T cell proliferation [goid 42104] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]	 [goid 4896] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with the alpha subunit of interleukin-12 [goid 42164] [evidence IEA]; Interacting selectively with the alpha subunit of interleukin-12 [goid 42164] [evidence ISS]; Interacting selectively with the alpha subunit of interleukin-12 [goid 42164] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]	Il12	Il12
Rattus norvegicus	RefSeq	GI_62657366-S	ILMN_275412	FBF1_PREDICTED	XM_001081712.1	XM_001081712.1		287836	109492263	XM_001081712.1	Fbf1_predicted	XP_001081712.1	ILMN_1367610	0002810594	S	3450	GCTGCTGAAGCACACAGCAGAGGAGGACCATGACTTCTTGGAGAATGAAC				10q32.3	PREDICTED: Rattus norvegicus Fas (TNFRSF6) binding factor 1 (predicted) (Fbf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664110-S	ILMN_270417	RGD1561985_PREDICTED	XM_001054726.1	XM_001054726.1		307548	109507006	XM_001054726.1	RGD1561985_predicted	XP_001054726.1	ILMN_1368889	0001780524	S	2262	ATGGTGACATGGTCCCGGAAGACGGAGATCCTTACCCGCAACCGGAGGAT				18p12	PREDICTED: Rattus norvegicus similar to dystrobrevin alpha isoform 1 (predicted), transcript variant 10 (RGD1561985_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865405-A	ILMN_266905	DR1	NM_001011914.1	NM_001011914.1		289881	58865405	NM_001011914.1	Dr1	NP_001011914.1	ILMN_1376359	0006590300	S	2698	GGAACCGTTTCCTTCAGAAAGGTTGAGCACCAAAGGCCGGTGGTTTAGTC	14	-	2006198-2006247	14p22	Rattus norvegicus down-regulator of transcription 1 (Dr1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6981083-S	ILMN_289837	IGFBP3	NM_012588.1	NM_012588.1		24484	6981083	NM_012588.1	Igfbp3	NP_036720.1	ILMN_1373523	0006900035	S	2038	GAGATGCTAGGTGATGTAACCACAGACACGCCCGAGGAAAGGAGCCTGTG	14	-	87959389-87959438	14q21	Rattus norvegicus insulin-like growth factor binding protein 3 (Igfbp3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A complex of proteins which includes the insulin-like growth factor (IGF) and a number of IGF-binding proteins. The complex plays a role in growth and development [goid 16942] [evidence IMP]; A complex of three proteins, which in animals is approximately 150kDa and consists of the insulin-like growth factor (IGF), the insulin-like growth factor binding protein-3 (IGFBP-3), or -5 (IGFBP-5) and an acid-labile subunit (ALS). The complex plays a role in growth and development [goid 42567] [evidence IMP]; A complex of two proteins, which in animals is 50kDa and consists of the insulin-like growth factor (IGF) and one of the insulin-like growth factor binding protein-1 (IGFBP-1), -2 (IGFBP-2), -4 (IGFBP-4) and -6 (IGFBP-6). The complex plays a role in growth and development [goid 42568] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein [goid 1933] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle cell migration [goid 14912] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45663] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45663] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence TAS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]; Increases the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a tyrosyl phenolic group of a protein [goid 8160] [evidence ISS]; Interacting selectively with insulin-like growth factor I [goid 31994] [evidence IPI]; Interacting selectively with insulin-like growth factor I [goid 31994] [evidence ISS]; Interacting selectively with insulin-like growth factor II [goid 31995] [evidence IPI]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]	IGF-BP3	IGF-BP3
Rattus norvegicus	RefSeq	GI_62665049-S	ILMN_51767	NDUFB7_PREDICTED	XM_341664.3	XM_341664.3		361385	109507944	XM_341664.3	Ndufb7_predicted	XP_341665.1	ILMN_1362066	0000780692	S	344	GCATGACTGGGACTACTGCGAGCACCAGGACTATGTGAAGCGCATGAAGG	19	-	26259532-26259552:26259719-26259747	19q11	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 (predicted) (Ndufb7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557078-S	ILMN_290534	CMTM2A	NM_001013142.1	NM_001013142.1		307616	61557078	NM_001013142.1	Cmtm2a	NP_001013160.1	ILMN_1352465	0004150010	S	878	GTCCATGATGTACTTGGGGAAGGCTCTCAGGGATTCAGGATACCCACAGA	19	+	636426-636475	19p14	Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 2A (Cmtm2a), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]	The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62639778-S	ILMN_277941	OTOG_PREDICTED	XM_001080797.1	XM_001080797.1		292918	109461953	XM_001080797.1	Otog_predicted	XP_001080797.1	ILMN_1357174	0001090041	S	8558	GGTGCCCTTCTGCCAGCATCTACAACCACAACATCAACACCTATGCCCGC				1q22	PREDICTED: Rattus norvegicus otogelin (predicted) (Otog_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56799405-S	ILMN_288925	MATK	NM_021859.2	NM_021859.2		60450	56799405	NM_021859.2	Matk	NP_068631.1	ILMN_1372033	0007100369	S	1493	GCCAGGACCCCTGACCCCTGAACTGGAAAGCAAGAGGACACAGATGTAGG	7	-	9940887-9940923:9940924-9940936	7q11	Rattus norvegicus megakaryocyte-associated tyrosine kinase (Matk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Batk; MGC105436	Batk; MGC105436
Rattus norvegicus	RefSeq	GI_6978652-S	ILMN_289154	CHRM3	NM_012527.1	NM_012527.1		24260	6978652	NM_012527.1	Chrm3	NP_036659.1	ILMN_1351883	0006660435	S	3477	CAGCCGACTTTGACATCAGTGGGTGTGTTCTCAGTGGTGTGTCTGTACCT	17	+	71218382-71218431	17q12.1	Rattus norvegicus cholinergic receptor, muscarinic 3 (Chrm3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IDA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence ISS]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4981] [evidence IDA];  [goid 4981] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741769-S	ILMN_271792	SSPO	NM_001007016.1	NM_001007016.1		474348	55741769	NM_001007016.1	Sspo	NP_001007017.1	ILMN_1348997	0000130114	S	15325	AACCTCCTTTGCCCTGATGGCCGCACGGAGCCAGTGTTGTTGCCAGTGAT	4	+	76586619-76586668	4q24	Rattus norvegicus SCO-spondin (Sspo), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659508-S	ILMN_285916	RGD1562425_PREDICTED	XR_009569.1	XR_009569.1		364006	109498778	XR_009569.1	RGD1562425_predicted		ILMN_1368952	0000110138	S	134	TTGCCAAGAAGCACAACAAGAAAGATGCAGGCCAACAATGCCAGGGCAGT				13q21	PREDICTED: Rattus norvegicus similar to Zgc:92868 (predicted) (RGD1562425_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639112-A	ILMN_274726	PVRL2	NM_001012064.1	NM_001012064.1		308417	58865701	NM_001012064.1	Pvrl2	NP_001012064.1	ILMN_1376242	0001980324	S	2263	TCCCCAAAGGTGAAAAGGGAGAGGATTCCCCAGTGTCAGGTAGGACCTCC	1	-	79022165-79022214	1q21	Rattus norvegicus poliovirus receptor-related 2 (Pvrl2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	MGC94554	MGC94554
Rattus norvegicus	RefSeq	GI_13929155-S	ILMN_271413	MYBPH	NM_031813.1	NM_031813.1		83708	13929155	NM_031813.1	Mybph	NP_114001.1	ILMN_1354472	0005220402	S	1570	GCGCCCAGGCATCCCCAAGACCAAGATACCACAAGAACAGCTAATGGGGG	13	+	47158464-47158513	13q13	Rattus norvegicus myosin binding protein H (Mybph), mRNA.	Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils [goid 5863] [evidence IEA]	A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_23463268-S	ILMN_267571	NPB	NM_153293.1	NM_153293.1		259222	23463268	NM_153293.1	Npb	NP_695205.1	ILMN_1353376	0006110537	S	124	TCGAGTTTCCACAGGTTCCCATCCACGCGACGTTCCGAGTCTCCAGCACT	10	+	109999968-110000017	10q32.3	Rattus norvegicus neuropeptide B (Npb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]	Interacting selectively with a G-protein-coupled receptor [goid 1664] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_56090322-S	ILMN_288276	CHPT1	XM_001079984.1	XM_001079984.1		362866	109481816	XM_001079984.1	Chpt1	XP_001079984.1	ILMN_1369771	0001340309	S	1306	GGAGAAGCAGTTAGGGGAGCCAATGTATGAAGGATATCCCCCTATGCAGG				7q13	PREDICTED: Rattus norvegicus choline phosphotransferase 1 (Chpt1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways resulting in the formation of platelet activating factor, 1-O-alkyl-2-acetyl-sn-glycerol 3-phosphocholine, where alkyl = hexadecyl or octadecyl. Platelet activating factor is an inflammatory mediator released from a variety of cells in response to various stimuli [goid 6663] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: CDP-choline + 1,2-diacylglycerol = CMP + a phosphatidylcholine [goid 4142] [evidence IEA]; Catalysis of the reaction: CDP-choline + 1,2-diacylglycerol = CMP + a phosphatidylcholine [goid 4142] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor) [goid 16780] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor) [goid 16780] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644019-S	ILMN_54889	LOC365868	XM_345248.2	XM_345248.2		365868	62644019	XM_345248.2	LOC365868	XP_345249.2	ILMN_1360435	0001410253	S	1333	TCACAGGGGCATGGAAAGCCATCCTCTCGGGTCTTCGGAGATACACACGG				2q34	PREDICTED: Rattus norvegicus similar to HORMA domain containing 1 (LOC365868), mRNA.					
Rattus norvegicus	RefSeq	GI_62661388-S	ILMN_62168	LOC290108	XM_224063.3	XM_224063.3		290108	62661388	XM_224063.3	LOC290108	XP_224063.3	ILMN_1348894	0002120670	S	19	TCCTGACAGCATCATTTTTACTCCTAGGCCTTCACCTGTGGGTGAGTGGC				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor V delta 8 (LOC290108), mRNA.					
Rattus norvegicus	RefSeq	GI_34874746-S	ILMN_62168	LOC290108	XM_224063.3	XM_224063.3		290108	62661388	XM_224063.3	LOC290108	XP_224063.3	ILMN_1364179	0004150528	S	363	GATGCACAGTGCTCTCCACACACCTGCAGCCCAGACCCAAACCTGCAGCT				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor V delta 8 (LOC290108), mRNA.					
Rattus norvegicus	RefSeq	GI_57113824-S	ILMN_275951	V1RG16	NM_001008959.1	NM_001008959.1		494303	57113824	NM_001008959.1	V1rg16	NP_001008959.1	ILMN_1356079	0001780647	S	760	GTTCTGACTGTCTTACGGACTTGCTCCAAATACCCAGTGCTCTGGGGAGT	1	+	71587408-71587457	1q21	Rattus norvegicus vomeronasal 1 receptor, G16 (V1rg16), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655215-S	ILMN_50030	WNT10A_PREDICTED	XM_237296.3	XM_237296.3		316527	109486159	XM_237296.3	Wnt10a_predicted	XP_237296.1	ILMN_1373258	0003800079	S	2044	AATGCACTGAAGCTGGTGGGCACTGGGAAGAAAACGCAGAAATGGGCGTC	9	+	74137279-74137328	9q33	PREDICTED: Rattus norvegicus wingless related MMTV integration site 10a (predicted) (Wnt10a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661834-S	ILMN_63674	SLITRK1_PREDICTED	XM_224474.3	XM_224474.3		306147	109501985	XM_224474.3	Slitrk1_predicted	XP_224474.1	ILMN_1353612	0003390594	S	5083	AAAAGCCAGCTCAGTAAAAGCCCCCAGGAGCAGGTGTACCTAGATGTGCC	15	-	93204975-93205024	15q23	PREDICTED: Rattus norvegicus SLIT and NTRK-like family, member 1 (predicted) (Slitrk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16258810-A	ILMN_300966	NOS1	NM_052799.1	NM_052799.1		24598	16258810	NM_052799.1	Nos1	NP_434686.1	ILMN_1376364	0002640068	S	2925	GGGGAGAGGATTCTGAAGATGAGGGAGGGGGATGAGCTTTGCGGACAGGA	12	-	39815059-39815108	12q16	Rattus norvegicus nitric oxide synthase 1, neuronal (Nos1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid [goid 42582] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs [goid 1917] [pmid 17027776] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 16537391] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [pmid 7527495] [evidence IDA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [pmid 17027776] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence ISS]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IDA]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus [goid 33197] [evidence IEP]; A change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 33555] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a drug that has originated externally to the cell or organism [goid 42738] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of, within or between cells [goid 43267] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of heart contraction [goid 45822] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasodilation [goid 45909] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IMP]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51926] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [pmid 16276418] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6527] [pmid 1383204] [evidence IDA]; The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water [goid 6809] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence TAS]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IDA]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence TAS]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IDA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence TAS]; Interacting selectively with any enzyme [goid 19899] [evidence IPI]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence TAS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence TAS]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IDA]; Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+ [goid 4517] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 10181] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [pmid 17029414] [evidence IC ]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with cadmium (Cd) ions [goid 46870] [pmid 17029414] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	bNOS	bNOS
Rattus norvegicus	RefSeq	GI_62662348-S	ILMN_63853	LOC502066	XM_577499.1	XM_577499.1		502066	62662348	XM_577499.1	LOC502066	XP_577499.1	ILMN_1367938	0003170066	S	270	GAAGGCCTGCTTTCTGGCATGGGTAAAAGATGCGTGCAAGTCACCAGGGT					PREDICTED: Rattus norvegicus similar to Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D) (CP4) (LOC502066), mRNA.					
Rattus norvegicus	RefSeq	GI_50657365-S	ILMN_272195	PBX2	NM_001002828.1	NM_001002828.1		406164	50657365	NM_001002828.1	Pbx2	NP_001002828.1	ILMN_1353382	0006980500	S	2555	CTCATGCCAAAATCAAGGGGGTGGGGAGAGGAGGGAGGTCATGCAAAGCC	20	-	4254090-4254139	20p12	Rattus norvegicus pre-B-cell leukemia transcription factor 2 (Pbx2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	Unigene	Rn.1982	ILMN_161597	RN.1982	Rn.1982		Rn.1982		40817589	CK473491			ILMN_1530275	0006200504	S	350	GATTCTCCTACAGATGACTCAGATCACAATAATATACAATACTAACAATA					AGENCOURT_17620577 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128906 5', mRNA					
Rattus norvegicus	RefSeq	GI_47576260-S	ILMN_298765	OLR1305	NM_001000959.1	NM_001000959.1		405311	47576260	NM_001000959.1	Olr1305	NP_001000959.1	ILMN_1364754	0004120050	S	834	CACCATTGTTGTGCCCATGATGAACCCCTTGATTTACAGTCTGCGGAATA	8	-	42382615-42382664	8q22	Rattus norvegicus olfactory receptor 1305 (Olr1305), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1305	Olr1305
Rattus norvegicus	RefSeq	GI_62662997-S	ILMN_274400	RGD1310061	NM_001024972.1	NM_001024972.1		290912	68163363	NM_001024972.1	RGD1310061	NP_001020143.1	ILMN_1367208	0001190364	S	968	CCTGGGCAAGGGGAAGTCCAGGCCAAAACTGTCCTTCTCACTAAAAACCC	16	+	86180850-86180899	16q12.5	Rattus norvegicus similar to hypothetical protein FLJ10154 (RGD1310061), mRNA.				MGC109359; MGC156517	MGC109359; MGC156517
Rattus norvegicus	RefSeq	GI_33414510-S	ILMN_286040	SMPTB	NM_182818.1	NM_182818.1		302879	33414510	NM_182818.1	Smptb	NP_877970.1	ILMN_1359220	0001690020	S	1475	GTATGGGAAGGCTCTCTGCATCCTGCTGTCCAAGCACCAGAGTGTGAAGC	X	-	28513071-28513120	Xq13	Rattus norvegicus polypyrimidine tract-binding protein (Smptb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition [goid 380] [evidence IDA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660546-S	ILMN_266043	ZCCHC4_PREDICTED	XM_001056045.1	XM_001056045.1		360946	109500675	XM_001056045.1	Zcchc4_predicted	XP_001056045.1	ILMN_1363096	0006040601	S	1295	GTAACACCTGCAATCGCTGTGCACTCCCAGACCATTCCTGTTTGGGGCCG				14q11	PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 4 (predicted) (Zcchc4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642640-S	ILMN_53909	RGD1565956_PREDICTED	XM_217582.4	XM_217582.4		302479	109464179	XM_217582.4	RGD1565956_predicted	XP_217582.3	ILMN_1372036	0004610059	S	248	GCCCAGGCCAAACAATGGGGCTGGACATGGTGGCCACAAAAGAGTGCTGA	2	-	1095993-1096042	2q11	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (predicted) (RGD1565956_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662421-S	ILMN_274334	ELL_PREDICTED	XM_001070626.1	XM_001070626.1		306347	109503985	XM_001070626.1	Ell_predicted	XP_001070626.1	ILMN_1372586	0006550500	S	2865	GTTGTCTGTCTGATTTGGGAACAGCAGGGCCACACTCTAGGCCGCAGGTG				16p14	PREDICTED: Rattus norvegicus elongation factor RNA polymerase II (predicted) (Ell_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47087114-S	ILMN_296483	PPP1R11	NM_212542.1	NM_212542.1		294207	47087114	NM_212542.1	Ppp1r11	NP_997707.1	ILMN_1359779	0004150601	S	1117	CCCTTCTGGCTCTCCAGAGGAGTTAGGAGAGGTCTTTGTCATTCACACCT	20	+	1697138-1697187	20p12	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 11 (Ppp1r11), mRNA.			Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence ISS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	HCGV; MGC94346; Tctex5	HCGV; MGC94346; Tctex5
Rattus norvegicus	RefSeq	GI_62652163	ILMN_55374	LOC503135	XM_578656.1	XM_578656.1		503135	62652163	XM_578656.1	LOC503135	XP_578656.1	ILMN_1649777	0003390537	S	312	AATGGGTCCCAATACTCTGTCCCCCACGCTGCATGAACTAATGGGTCCCA					PREDICTED: Rattus norvegicus similar to cg1 protein (LOC503135), mRNA.					
Rattus norvegicus	RefSeq	GI_62657554-S	ILMN_271145	GBE1	XM_001064453.1	XM_001064453.1		288333	109493744	XM_001064453.1	Gbe1	XP_001064453.1	ILMN_1349615	0002650286	S	2292	GGATCTGCCAAACTGAAGAGACCTGAAGTCAGCCCATCTCTCCCGGACGA				11p11	PREDICTED: Rattus norvegicus glucan (1,4-alpha-), branching enzyme 1 (Gbe1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain [goid 3844] [evidence ISS]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IDA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20302068-S	ILMN_300443	HSPB6	NM_138887.1	NM_138887.1		192245	20302068	NM_138887.1	Hspb6	NP_620242.1	ILMN_1357604	0001050717	S	1191	AGATGTCTTAGGGAGCCCGCTCCACATCTGCCATCCTCTAAGGTTGCACC	1	+	85601095-85601144	1q21	Rattus norvegicus heat shock protein, alpha-crystallin-related, B6 (Hspb6), mRNA.		Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	p20; Hsp20	p20; Hsp20
Rattus norvegicus	RefSeq	GI_24025631-S	ILMN_267323	PROP1	NM_153627.1	NM_153627.1		266738	24025631	NM_153627.1	Prop1	NP_705891.1	ILMN_1352395	0002850053	S	624	ACCCCCACCCATGTTTTCCCTCAGCCTGGAGACGCCAAAGTCCTGGAACT	10	-	36527113-36527162	10q22	Rattus norvegicus PROP paired-like homeobox 1 (Prop1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The differentiation of cells that will contribute to the structure and function of the hypothalamus [goid 21979] [evidence IEA]; The differentiation of cells that will contribute to the structure and function of the hypothalamus [goid 21979] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whose specific outcome is the progression of a gland over time, from its formation to the mature structure. A gland is an organ specialised for secretion [goid 48732] [evidence IEA]; The process whose specific outcome is the progression of a gland over time, from its formation to the mature structure. A gland is an organ specialised for secretion [goid 48732] [evidence ISS]; The process by which the anatomical structures of the hypophysis are generated and organized. Morphogenesis pertains to the creation of form. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 48850] [evidence IEA]; The process by which the anatomical structures of the hypophysis are generated and organized. Morphogenesis pertains to the creation of form. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 48850] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes [goid 60070] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes [goid 60070] [evidence ISS]; The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a somatotropin secreting cell. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60126] [evidence IEA]; The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a somatotropin secreting cell. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin [goid 60126] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence IEA]; Interacting selectively with the beta subunit of the catenin complex [goid 8013] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34872081-S	ILMN_50622	RGD1562689_PREDICTED	XM_342946.2	XM_342946.2		362628	109475658	XM_342946.2	RGD1562689_predicted	XP_342947.2	ILMN_1367007	0006380711	S	570	TGGACGCCACTGCTTCAGCGCCAGAACCGTCTATACCTTAACCCACACGA	5	+	154478802-154478851	5q36	PREDICTED: Rattus norvegicus similar to class II cytokine receptor 12 (predicted) (RGD1562689_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.98822	ILMN_161331	RN.98822	Rn.98822		Rn.98822		51543537	CV076506			ILMN_1530353	0005340162	S	475	TTTCACCACGCTTCTTCATACTTGAAACTTGTTCTGCTATTTGGATTTCA					AGENCOURT_31479076 NIH_MGC_251 Rattus norvegicus cDNA clone IMAGE:7385236 5', mRNA					
Rattus norvegicus	RefSeq	GI_62666916-S	ILMN_300117	RGD1564534_PREDICTED	XM_001065165.1	XM_001065165.1		501576	109511966	XM_001065165.1	RGD1564534_predicted	XP_001065165.1	ILMN_1371832	0003360286	S	1773	AGCTGCCATTTCCTGAGATGGGAGTGCTCCCAGGGCAAGTTACTGTACCC					PREDICTED: Rattus norvegicus similar to CHCHD4 protein (predicted) (RGD1564534_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666038	ILMN_267308	RGD1560732_PREDICTED	XM_001053331.1	XM_001053331.1		499443	109510059	XM_001053331.1	RGD1560732_predicted	XP_001053331.1	ILMN_1650346	0004850722	S	1009	GCAACCGTGTCATAGAAGGTGACGTGGTCTCTGCCCTCAACAAGGCCTGG				20q11	PREDICTED: Rattus norvegicus similar to LIM and senescent cell antigen-like domains 1 (predicted) (RGD1560732_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639846-S	ILMN_285657	HERC2_PREDICTED	XM_001054649.1	XM_001054649.1		308669	109462037	XM_001054649.1	Herc2_predicted	XP_001054649.1	ILMN_1369764	0001500433	S	14413	GGAGAGCCAGCTGCCGATGACAGCAGTGAGGACTCAGATAATGAGGACGC				1q22	PREDICTED: Rattus norvegicus hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2 (predicted) (Herc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656324-S	ILMN_60452	RGD1563438_PREDICTED	XM_213333.4	XM_213333.4		287442	109488387	XM_213333.4	RGD1563438_predicted	XP_213333.1	ILMN_1371362	0000580435	S	1065	GCCTGTTGGAGGGAGCCTGCTGATCTTGGGCTGGCTTGCCTTGGCTTTTT	10	+	56680189-56680238	10q24	PREDICTED: Rattus norvegicus similar to novel protein of unknown function (DUF423) family member (predicted) (RGD1563438_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640949-S	ILMN_281479	LOC308846	XM_001065167.1	XM_001065167.1		308846	109462450	XM_001065167.1	LOC308846	XP_001065167.1	ILMN_1372860	0000430181	S	2062	GCTGTGCAGTGGAGCAAGCAGAAGAAATTATCGGGCTGGAAGCCACAGGC				1q32	PREDICTED: Rattus norvegicus similar to UV radiation resistance associated (LOC308846), mRNA.					
Rattus norvegicus	RefSeq	GI_58865377-A	ILMN_271389	TSSK1	NM_001011900.1	NM_001011900.1		288358	58865377	NM_001011900.1	Tssk1	NP_001011900.1	ILMN_1376397	0001570500	S	1075	CTGAGGCCCAATCTGAGACAAAACCCCAGGAAGATAATGTGCAGGTGGCC	11	-	85079362-85079411	11q23	Rattus norvegicus testis-specific serine kinase 1 (Tssk1), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Stk22a	Stk22a
Rattus norvegicus	RefSeq	GI_62644618-S	ILMN_62665	LOC365974	XM_345309.2	XM_345309.2		365974	62644618	XM_345309.2	LOC365974	XP_345310.2	ILMN_1360743	0000450707	S	29	GACACGGGAGGAGTTCAAGGTCATCCTTAGCTGCCAAGCCCTGGCACTGA					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC37818 (predicted) (LOC365974), mRNA.					
Rattus norvegicus	RefSeq	GI_61557123-S	ILMN_293746	ZCCHC9	NM_001013156.1	NM_001013156.1		309986	61557123	NM_001013156.1	Zcchc9	NP_001013174.1	ILMN_1372466	0004070138	S	1162	TGTGCACCAGGTCCAGAGTACTGAGATTCAGGCAGTGTGATTGAGAGCTT	2	-	22046038-22046087	2q12	Rattus norvegicus zinc finger, CCHC domain containing 9 (Zcchc9), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_31340700-S	ILMN_285167	RDH10	NM_181478.2	NM_181478.2		353252	31340700	NM_181478.2	Rdh10	NP_852143.1	ILMN_1358265	0000780438	S	793	TCGAGCCCTTTTTGCCCCCTTTGAAGCCCGATTACTGTGTGAAGCAGGCC	5	-	2286676-2286725	5q11	Rattus norvegicus retinol dehydrogenase 10 (all-trans) (Rdh10), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence ISS]; Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644640-S	ILMN_64081	LOC362071	XM_342373.2	XM_342373.2		362071	62644640	XM_342373.2	LOC362071	XP_342374.2	ILMN_1373420	0002690181	S	624	GAGCTGTACCCCCTGATAGAGCTCTTCGGCAGTTGCTTGCAATTTGAAAC					PREDICTED: Rattus norvegicus similar to glutamyl aminopeptidase (LOC362071), mRNA.					
Rattus norvegicus	RefSeq	GI_17298687-S	ILMN_267161	HTR2C	NM_012765.2	NM_012765.2		25187	17298687	NM_012765.2	Htr2c	NP_036897.2	ILMN_1363409	0000360138	S	1255	CGGCATACCAATGAACGTGTGGCTAGGAAAGCTAATGACCCTGAGCCTGG	X	-	31015635-31015684	Xq14	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 2C (Htr2c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide [goid 7187] [evidence TAS]; The series of molecular signals generated as a consequence of a serotonin receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7208] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of gamma-aminobutyric acid [goid 14054] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of acetylcholine [goid 14057] [evidence IMP]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A G-protein coupled signaling pathway that results in the activation of phospholipase D, causing an increase in cellular levels of phosphatidic acid [goid 31583] [evidence IMP]; A change in the behavior of an organism as a result of a nicotine stimulus [goid 35095] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of locomotion of a cell or organism [goid 40013] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving dopamine [goid 45963] [evidence IMP]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence IDA]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IMP]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652959-S	ILMN_272982	LOC690428	XM_001074429.1	XM_001074429.1		690428	109481218	XM_001074429.1	LOC690428	XP_001074429.1	ILMN_1372021	0000870706	S	155	ATGACCCCAAACGCCAAACGCACATCAAGGATCCTGCCTTGATTTGTTGG	7	-	133116755-133116804	7q35	PREDICTED: Rattus norvegicus similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa (LOC690428), mRNA.					
Rattus norvegicus	RefSeq	GI_62654988-S	ILMN_66973	LOC367250	XM_578785.1	XM_578785.1		367250	62654988	XM_578785.1	LOC367250	XP_578785.1	ILMN_1356211	0002760563	S	452	GGCTCAGCTGGTGGTGTTTGCCCATTATGTTAACTTGGAAGACAAGGGTG				9q21	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC367250), mRNA.					
Rattus norvegicus	RefSeq	GI_62650682-S	ILMN_262509	RGD1559724_PREDICTED	XM_001078945.1	XM_001078945.1		299021	109479384	XM_001078945.1	RGD1559724_predicted	XP_001078945.1	ILMN_1362332	0003170253	S	246	TGGTGCGGCGGTGGATTTCATGACCAAGATCTATGGAGGACGGCTGAGAC				6q23	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (predicted) (RGD1559724_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865843-A	ILMN_271743	FUS	NM_001012137.1	NM_001012137.1		317385	58865843	NM_001012137.1	Fus	NP_001012137.1	ILMN_1376319	0001230441	S	1578	TCCAGGGGTGAGCACAGACAGGATCGCAGGGAGAGGCCATATTAGCCTGA	1	+	187264260-187264264:187264508-187264547:187264548-187264552	1q36	Rattus norvegicus fusion, derived from t(12;16) malignant liposarcoma (human) (Fus), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62655330-S	ILMN_268743	SP110	NM_001034137.1	NM_001034137.1		301570	77628030	NM_001034137.1	Sp110	NP_001029309.1	ILMN_1350384	0006860112	S	1666	GCACTGAGTACACGCTCCCGATGCCTTTGTTCACAGCTGACTTGCAATAG	9	-	84258278-84258327	9q35	Rattus norvegicus SP110 nuclear body protein (Sp110), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	MGC124651	MGC124651
Rattus norvegicus	RefSeq	GI_21426768-S	ILMN_278293	ACSM2	NM_144748.1	NM_144748.1		246263	21426768	NM_144748.1	Acsm2	NP_653349.1	ILMN_1354490	0003840100	S	2208	CATCATGCCCAAAGGAGAAGGAAATACCACTTACAGAGCATGCCCAAGGC	1	+	177868843-177868892	1q35	Rattus norvegicus acyl-CoA synthetase medium-chain family member 2 (Acsm2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + an acid + CoA = AMP + diphosphate + an acyl-CoA [goid 47760] [evidence IEA]	KS	KS
Rattus norvegicus	RefSeq	GI_62658662-S	ILMN_61987	LOC501818	XM_577230.1	XM_577230.1		501818	62658662	XM_577230.1	LOC501818	XP_577230.1	ILMN_1369493	0002100176	S	755	GGTGTTCTTCCTGTGGTGGAAGCAAAGAAGTGCATGGAGCCTGCTGTCCT				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC501818), mRNA.					
Rattus norvegicus	RefSeq	GI_62641643-S	ILMN_50777	LOC499292	XM_574588.1	XM_574588.1		499292	62641643	XM_574588.1	LOC499292	XP_574588.1	ILMN_1349090	0004670494	S	344	CGTGGAACCACGGAACAACTTCAAGTCCAAGCCATGGACACACAAGAGGA					PREDICTED: Rattus norvegicus LOC499292 (LOC499292), mRNA.					
Rattus norvegicus	RefSeq	GI_62656380-S	ILMN_274469	LOC687770	XR_009343.1	XR_009343.1		687770	109491218	XR_009343.1	LOC687770		ILMN_1359463	0006100465	S	2243	CCCACATAGAGAAGCAGGAGAGCAGGGCTGGAGTAGGGTTGACCAGGATC					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 40 (LOC687770), mRNA.					
Rattus norvegicus	RefSeq	GI_62646911-S	ILMN_64442	RGD1559440_PREDICTED	XM_231528.4	XM_231528.4		312166	109471787	XM_231528.4	RGD1559440_predicted	XP_231528.4	ILMN_1371581	0004810324	S	4574	GCGCCAACCCTACTGTACTTCCGTCAAAGTGGTGTGCCTCCCAGTTACCA	4	-	49658850-49658899	4q22	PREDICTED: Rattus norvegicus similar to Ca2+-dependent activator for secretion protein 2 (predicted) (RGD1559440_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665231-S	ILMN_61469	RGD1307418_PREDICTED	XM_226401.4	XM_226401.4		291955	109508047	XM_226401.4	RGD1307418_predicted	XP_226401.4	ILMN_1367888	0002370358	S	1481	AGTGATGGAGCAGACCACGGAGACGAGCTTTCCTATCTCTTCGGGAGCCC	19	+	34964264-34964313	19q11	PREDICTED: Rattus norvegicus similar to cDNA sequence BC026374 (predicted) (RGD1307418_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662014	ILMN_277066	RGD1563454_PREDICTED	XM_001076716.1	XM_001076716.1		306127	109502896	XM_001076716.1	RGD1563454_predicted	XP_001076716.1	ILMN_1649811	0003390148	S	1278	GGTCACTGGAGGAAACCACTGAGCCAGGAGGATCTGCACAAGAAGTTCCG				15q22	PREDICTED: Rattus norvegicus similar to IMMUNE-RESPONSIVE PROTEIN 1 (predicted) (RGD1563454_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652525-S	ILMN_50537	LOC299961	XM_213095.3	XM_213095.3		299961	62652525	XM_213095.3	LOC299961	XP_213095.3	ILMN_1357465	0001410685	S	357	GGCGGCTTCCCGATCACCAACTTCTAGAGACTTCAGACTCGATGGAGAGG					PREDICTED: Rattus norvegicus similar to Chorion-specific transcription factor GCMa (Glial cells missing homolog 1) (GCM motif protein 1) (LOC299961), mRNA.					
Rattus norvegicus	RefSeq	GI_46485390-S	ILMN_269676	NS5ATP4	NM_207607.1	NM_207607.1		311934	46485390	NM_207607.1	Ns5atp4	NP_997490.1	ILMN_1350087	0002260685	S	315	AGCTCTAGATGCCATCCGTGCCTCTGAGATCCCATTTCACGCTGAAGGCC	3	-	30980290-30980339	3q12	Rattus norvegicus NS5A (hepatitis C virus) transactivated protein 4 (Ns5atp4), mRNA.				NICE-3	NICE-3
Rattus norvegicus	RefSeq	GI_34854740-S	ILMN_161818	LOC362141	XM_342441.1	XM_342441.1			34854740	XM_342441.1	LOC362141		ILMN_2039323	0007560706	S	825	TCCTACCCCAGGATCTGTGTTGCTTGTAATCTGGTCCTAGCTGTGCACCC					Rattus norvegicus similar to RIKEN cDNA 9330158F14 gene (LOC362141), mRNA.					
Rattus norvegicus	RefSeq	GI_62653665-S	ILMN_64542	LOC500997	XM_576411.1	XM_576411.1		500997	62653665	XM_576411.1	LOC500997	XP_576411.1	ILMN_1366383	0001090438	S	814	GTATGGCCTGGGGCTCTTATGAATGCCGGAGAGCTTACTGAGGAGCAGGC				8q24	PREDICTED: Rattus norvegicus LOC500997 (LOC500997), mRNA.					
Rattus norvegicus	RefSeq	GI_62644472-S	ILMN_54890	METAP1_PREDICTED	XM_215717.3	XM_215717.3		295500	62644472	XM_215717.3	Metap1_predicted	XP_215717.3	ILMN_1371266	0002810435	S	3110	CAGTCTAGCAAAGTGCCAGCACCACTGGAGATGTAGCTGTGACAGGGGAG				2q44	PREDICTED: Rattus norvegicus methionyl aminopeptidase 1 (predicted) (Metap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651078-S	ILMN_68896	BATF_PREDICTED	XM_216745.3	XM_216745.3		299206	109478526	XM_216745.3	Batf_predicted	XP_216745.3	ILMN_1368018	0004050301	S	885	GTCAGTGTCGCCAATTATGCCCAAGATGCAACGCACAGAGGGAGGAGGGC	6	+	109817522-109817571	6q31	PREDICTED: Rattus norvegicus basic leucine zipper transcription factor, ATF-like (predicted) (Batf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638427-S	ILMN_49015	BRD9_PREDICTED	XM_217740.4	XM_217740.4		308067	109457690	XM_217740.4	Brd9_predicted	XP_217740.4	ILMN_1359725	0004050041	S	2079	TTGCAGTCAGATGGCTCAACTCTGTCTCCCGAGCTCCAGCAGCCAAGCCT	1	-	30136972-30137021	1p11	PREDICTED: Rattus norvegicus bromodomain containing 9 (predicted) (Brd9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659176-S	ILMN_50292	PIGN_PREDICTED	XM_219411.3	XM_219411.3		309051	62659176	XM_219411.3	Pign_predicted	XP_219411.3	ILMN_1374998	0001230669	S	2657	GCCTAAGGCCTGTGCAGAAGATTTCAGAACTGTAACACACAGCGAGCTGC					PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class N (predicted) (Pign_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605775-S	ILMN_285511	TAF11	NM_001008350.1	NM_001008350.1		309638	56605775	NM_001008350.1	Taf11	NP_001008351.1	ILMN_1353957	0004810731	S	776	CGGCGTGCCAGGACGCATGATGCTGACTTTAATGTTTCTGTTCCACCTGC	20	-	6113779-6113828	20p12	Rattus norvegicus TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor (Taf11), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters [goid 5669] [evidence ISS]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105516	MGC105516
Rattus norvegicus	RefSeq	GI_62665854-S	ILMN_69110	LOC365549	XM_345092.2	XM_345092.2		365549	62665854	XM_345092.2	LOC365549	XP_345093.2	ILMN_1363527	0000520398	S	1864	GCAGGCTAACAGACCCAACAATACGGGGCCAACACTGAACACTGGCTCGC				20p12	PREDICTED: Rattus norvegicus similar to sodium-glucose cotransporter-like 1 (LOC365549), mRNA.					
Rattus norvegicus	RefSeq	GI_62641996-S	ILMN_68873	POLR2K_PREDICTED	XM_219604.2	XM_219604.2		309224	62641996	XM_219604.2	Polr2k_predicted	XP_219604.2	ILMN_1357048	0002570368	S	448	GGGTGCTGGAGGAAACCTACCAAGAACGCCAGCGGACCGGCCATAGATAA					PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide K (predicted) (Polr2k_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576746-S	ILMN_298283	OLR1768	NM_001000264.1	NM_001000264.1		293878	47576746	NM_001000264.1	Olr1768	NP_001000264.1	ILMN_1359797	0003850671	S	888	CAAAGAAGTCAAAGGTGCCCTCAGAAGACTCCTGGTGAACCGCAACCGGT	X	-	160469246-160469295	Xq37	Rattus norvegicus olfactory receptor 1768 (Olr1768), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1768	Olr1768
Rattus norvegicus	RefSeq	GI_62662297-S	ILMN_61104	LOC502045	XM_577478.1	XM_577478.1		502045	62662297	XM_577478.1	LOC502045	XP_577478.1	ILMN_1352749	0005670435	S	831	AAGGAAAGAGCAGCCACCAACACCTTTGCCCCAAACAAGACGCCACCTGC					PREDICTED: Rattus norvegicus similar to Gag (LOC502045), mRNA.					
Rattus norvegicus	RefSeq	GI_57164038-S	ILMN_280178	V1RC40	NM_001009531.1	NM_001009531.1		494251	57164038	NM_001009531.1	V1rc40	NP_001009531.1	ILMN_1352354	0000940358	S	603	CTTGCACAGACATCAGAGGCAACACAGGAATCTTCATAGCATCAGCCACC	4	+	86117066-86117115	4q24	Rattus norvegicus vomeronasal 1 receptor, C40 (V1rc40), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658718-S	ILMN_65176	LOC367994	XM_347159.3	XM_347159.3		367994	109495566	XM_347159.3	LOC367994	XP_347160.2	ILMN_1366153	0004280019	S	233	ACATGCCACCCCCAGCTGCCCAGAACTTTACTGCCCCACGGAAGGTGGAA	12	-	21728951-21728998:21729171-21729172	12q12	PREDICTED: Rattus norvegicus similar to uroplakin 3B isoform b (LOC367994), mRNA.					
Rattus norvegicus	RefSeq	GI_47578052-S	ILMN_298299	OLR1022	NM_001001075.1	NM_001001075.1		405965	47578052	NM_001001075.1	Olr1022	NP_001001075.1	ILMN_1369104	0005340427	S	33	GCTATTGGGAATATCAGGCAATAGAAAGCTTCAGGTAGTAATCTTCGTCT	7	-	7039572-7039621	7q11	Rattus norvegicus olfactory receptor 1022 (Olr1022), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1022	Olr1022
Rattus norvegicus	RefSeq	GI_62655911-S	ILMN_61625	LUC7L_PREDICTED	XM_340778.2	XM_340778.2		360503	62655911	XM_340778.2	Luc7l_predicted	XP_340779.2	ILMN_1371437	0006980156	S	1131	AGAACTCCAATGGCAAGACTGCATCGCGGAGGTCGGAGGAGAAGGAGGCT				10q12	PREDICTED: Rattus norvegicus LUC7-like (S. cerevisiae) (predicted) (Luc7l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576372-S	ILMN_272500	OLR901	NM_001000057.1	NM_001000057.1		288810	47576372	NM_001000057.1	Olr901	NP_001000057.1	ILMN_1359396	0004070270	S	462	CTTTCCCCCACTGGCAATGGGTCTTGAGCTGAATTTCTGTGATTCTTGGA	7	+	3457597-3457646	7q11	Rattus norvegicus olfactory receptor 901 (Olr901), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr901; ratchr7-3457136-3458080_ORF	Olr901; ratchr7-3457136-3458080_ORF
Rattus norvegicus	RefSeq	GI_18677748-S	ILMN_277322	DHRS9	NM_130819.1	NM_130819.1		170635	18677748	NM_130819.1	Dhrs9	NP_570832.1	ILMN_1352271	0002810079	S	1294	TTCAGGAAGAAGGACAGGGAGGGCCTATCACAAAAGCCAGTCTCGCCGGA	3	+	51543206-51543255	3q21	Rattus norvegicus dehydrogenase/reductase (SDR family) member 9 (Dhrs9), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]	The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence ISS]; The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence IEA]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence ISS]; The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants [goid 42448] [evidence IEA]; The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A [goid 42573] [evidence NAS]; The chemical reactions and pathways resulting in the formation of 9-cis-retinoic acid, a metabolically active vitamin A derivative [goid 42904] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+ [goid 4022] [evidence ISS]; Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence IMP]; Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NAD+ + testosterone = NADH + H+ + androst-4-ene-3,17-dione [goid 47035] [evidence ISS]	Rdhl	Rdhl
Rattus norvegicus	RefSeq	GI_62718528-S	ILMN_273061	LOC691712	XM_001079351.1	XM_001079351.1		691712	109513976	XM_001079351.1	LOC691712	XP_001079351.1	ILMN_1374329	0005420056	S	614	GGACGGATCCCAGGAAGACAGCCCCCTGAGGAATGAGTTTCTCTCTCATG	Un|NW_047990.1	+	208412-208412:208413-208461		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC691712), mRNA.					
Rattus norvegicus	RefSeq	GI_47576826-S	ILMN_265371	OLR823	NM_001000992.1	NM_001000992.1		405352	47576826	NM_001000992.1	Olr823	NP_001000992.1	ILMN_1363558	0004070465	S	766	GCCTACATAAGCCCTGTCTCCAGCTATAACGCAGAGAAGAGCAAATTGGC	4	+	152691413-152691462	4q42	Rattus norvegicus olfactory receptor 823 (Olr823), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr823	Olr823
Rattus norvegicus	RefSeq	GI_62656386-S	ILMN_295183	PRSS34_PREDICTED	XM_001059595.1	XM_001059595.1		287140	109490369	XM_001059595.1	Prss34_predicted	XP_001059595.1	ILMN_1350251	0007050072	S	861	GGGACCAGACAGGATTCATACACCAGAAGACACCCCAGCCACTCATGCTG				10q12	PREDICTED: Rattus norvegicus protease, serine, 34 (predicted) (Prss34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9910337-S	ILMN_295433	LOC56825	NM_020091.1	NM_020091.1		56825	9910337	NM_020091.1	LOC56825	NP_064476.1	ILMN_1362845	0004920487	S	897	CTGTGCAGGGCCAACATGACCAGTTTGACATTGACTGCTGGAGGCTGAAC	2	-	202682811-202682838:202683373-202683394	2q34	Rattus norvegicus prochymosin (LOC56825), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile [goid 4190] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662337-S	ILMN_63154	LOC290589	XM_224663.3	XM_224663.3		290589	62662337	XM_224663.3	LOC290589	XP_224663.3	ILMN_1354071	0003060059	S	1264	CCCAATACAGTGGTTACCACATAGACCAGAGCCTGATGGAGTCCAGGAGG				16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (LOC290589), mRNA.					
Rattus norvegicus	RefSeq	GI_62664526-S	ILMN_62623	FECH_PREDICTED	XM_341622.3	XM_341622.3		361338	109506658	XM_341622.3	Fech_predicted	XP_341623.2	ILMN_1364324	0004480242	S	2204	GCCCCAGGCGCATAGCCTAATAAACGTGTGGAAGTTCAGTCCTCGCTGTT	18	-	60675962-60676011	18q12.1	PREDICTED: Rattus norvegicus ferrochelatase (predicted) (Fech_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34932060-S	ILMN_62623	FECH_PREDICTED	XM_341622.3	XM_341622.3		361338	109506658	XM_341622.3	Fech_predicted	XP_341623.2	ILMN_2040341	0001170689	S	1265	AGGCCCTTGCTGACCTGGTGCACTCCCACATCCAGTCAAACAAGCTGTGC	18	-	60676901-60676949:60677407-60677407	18q12.1	PREDICTED: Rattus norvegicus ferrochelatase (predicted) (Fech_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662593-S	ILMN_64215	LOC498623	XM_573902.1	XM_573902.1		498623	62662593	XM_573902.1	LOC498623	XP_573902.1	ILMN_1350803	0006940168	S	728	GGGGCAGCACCCCACGAGCGAACTTGAGCCTCGGGACCACAGAAATAGCA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498623), mRNA.					
Rattus norvegicus	RefSeq	GI_62645369-S	ILMN_55444	LOC499830	XM_575171.1	XM_575171.1		499830	62645369	XM_575171.1	LOC499830	XP_575171.1	ILMN_1369699	0006350239	S	623	CACAAAGCAGTCCAACCAAAGGGACTACTCAGTACCATTCCACCACACGC					PREDICTED: Rattus norvegicus similar to Miz1 protein (LOC499830), mRNA.					
Rattus norvegicus	RefSeq	GI_62652811-S	ILMN_296164	CCDC134	NM_001024355.1	NM_001024355.1		500909	66730506	NM_001024355.1	Ccdc134	NP_001019526.1	ILMN_1373552	0006020463	S	1373	CCCCAAGGCTGGTGAGAGAACTATTAGGGCAGCAGACACTTCTGGAGATG	7	+	120517478-120517527	7q34	Rattus norvegicus coiled-coil domain containing 134 (Ccdc134), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_61557407-S	ILMN_274578	DNAJC5G	NM_001013242.1	NM_001013242.1		366567	61557407	NM_001013242.1	Dnajc5g	NP_001013260.1	ILMN_1351534	0003870136	S	1396	CCCATGTGGGGTCACAGCCTAGGAACGAACCGTCAAACCTCTCTGTACTC	6	-	25239204-25239253	6q14	Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 5 gamma (Dnajc5g), mRNA.		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57528325-S	ILMN_267113	MTFMT	NM_001009697.1	NM_001009697.1		315763	57528325	NM_001009697.1	Mtfmt	NP_001009697.1	ILMN_1374957	0000360484	S	949	CCGTCGCAAATGCTGCTAGTTCACTGCAAGGATGGCTGGATCGGGGTTCG	8	+	69697774-69697803:69701309-69701328	8q24	Rattus norvegicus mitochondrial methionyl-tRNA formyltransferase (Mtfmt), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA + H2O = tetrahydrofolate + N-formylmethionyl-tRNA [goid 4479] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	RGD1309462; MGC95129	RGD1309462; MGC95129
Rattus norvegicus	RefSeq	GI_61557195-S	ILMN_300812	MED20	NM_001013178.1	NM_001013178.1		316209	61557195	NM_001013178.1	Med20	NP_001013196.1	ILMN_1357112	0006840672	S	208	CATTTTGTGTGGACTGTGAAACTTACCACACAGCTGCCTCCACCCTGGGC	9	-	8843730-8843779	9q12	Rattus norvegicus mediator complex subunit 20 (Med20), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Usp49	Usp49
Rattus norvegicus	RefSeq	GI_62718338-S	ILMN_264203	LOC691401	XM_001078077.1	XM_001078077.1		691401	109513914	XM_001078077.1	LOC691401	XP_001078077.1	ILMN_1365724	0004210129	S	613	AAAGATCAATGGCCAGAACCAGCATTATCAGGTCTCAGAAAGTGCAAGAG	Un|NW_047968.1	-	62462-62481:63192-63221		PREDICTED: Rattus norvegicus similar to Myosin-9B (Myosin IXb) (Unconventional myosin-9b) (LOC691401), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644671-S	ILMN_66021	LOC311772	XM_231028.3	XM_231028.3		311772	62644671	XM_231028.3	LOC311772	XP_231028.3	ILMN_1359626	0002760022	S	1170	AGGCGCTGGTTGAAAACCAAGAGCTAAGCTGGACCTCTGGAGCTTCAGGC				3p13	PREDICTED: Rattus norvegicus similar to nidogen 2 (LOC311772), mRNA.					
Rattus norvegicus	RefSeq	GI_62643819-S	ILMN_268412	SNAPAP	NM_001025648.1	NM_001025648.1		295217	71043699	NM_001025648.1	Snapap	NP_001020819.1	ILMN_1365681	0001570152	S	1100	TGAGAATCCAAGGTCAAGGGCAGAGCCTTGATAGCTGAGAGCCCCTAAGC	2	-	182762777-182762826	2q34	Rattus norvegicus SNAP-associated protein (Snapap), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]	MGC112927; Snapin	MGC112927; Snapin
Rattus norvegicus	RefSeq	GI_51036638-S	ILMN_270672	TNP2	NM_017057.2	NM_017057.2		24840	51036638	NM_017057.2	Tnp2	NP_058753.2	ILMN_1362905	0006520441	S	306	CTTGGAAGGGAAAGTGAGCAAGAGAAAGGCGGTCAGGAGGCGGAAGCGGA	10	+	4816917-4816966	10q11	Rattus norvegicus transition protein 2 (Tnp2), mRNA.	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures [goid 786] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence IEA]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence IEA]; The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm [goid 7341] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644271-S	ILMN_67568	LOC499701	XM_580006.1	XM_580006.1		499701	62644271	XM_580006.1	LOC499701	XP_580006.1	ILMN_1366618	0001660056	S	1461	GGTCACCAGCAGGATCGAGAAGACAAGATGCGTAGGCTAGTCCGAAGACA					PREDICTED: Rattus norvegicus LOC499701 (LOC499701), mRNA.					
Rattus norvegicus	RefSeq	GI_62649970-S	ILMN_56946	PLEKHM2_PREDICTED	XM_233611.3	XM_233611.3		313667	62649970	XM_233611.3	Plekhm2_predicted	XP_233611.3	ILMN_1366825	0006350541	S	3325	GTCAGGAGCAAAAGACAAGGGCTGAGAGAGGGAGCAGAGTCCATGAGCAC				5q36	PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family M (with RUN domain) member 2 (predicted) (Plekhm2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507018-S	ILMN_283638	SCFD1	NM_019364.1	NM_019364.1		54350	9507018	NM_019364.1	Scfd1	NP_062237.1	ILMN_1362058	0001050097	S	1972	AGCCAGACGTGTCCTTCTCCATAGCAGTGCCCTAACAGTGCAACCTGCGG	6	+	71532224-71532273	6q22	Rattus norvegicus sec1 family domain containing 1 (Scfd1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell [goid 5798] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence TAS]; The directed movement of substances from the Golgi to other parts of the cell, including organelles and the plasma membrane, mediated by small transport vesicles [goid 6892] [evidence IDA]; The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence TAS]	rSly1; RA410; Sly1	rSly1; RA410; Sly1
Rattus norvegicus	RefSeq	GI_47577878-S	ILMN_283304	OLR1172	NM_001000983.1	NM_001000983.1		405339	47577878	NM_001000983.1	Olr1172	NP_001000983.1	ILMN_1367330	0000540541	S	384	CCCGCTCAACTACACTGTAATCATGAACCCTCGGCTGTGCGCCCTTCTGA	8	-	18629135-18629184	8q13	Rattus norvegicus olfactory receptor 1172 (Olr1172), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	GUST27	GUST27
Rattus norvegicus	RefSeq	GI_62658664-S	ILMN_62077	LOC288549	XM_222014.3	XM_222014.3		288549	62658664	XM_222014.3	LOC288549	XP_222014.3	ILMN_1361688	0002940465	S	662	CTTCCTGTGGTGGAAGAAAAGGCACCAGTCGGAGTGTTACTTTGACGCTG				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC288549), mRNA.					
Rattus norvegicus	RefSeq	GI_34866805-S	ILMN_53933	LYNX1_PREDICTED	XM_216965.3	XM_216965.3		300018	109480869	XM_216965.3	Lynx1_predicted	XP_216965.1	ILMN_1354354	0001690673	S	1033	AGTAGCCAAACTCCACCTTCATAGTGTCAGGACCCTGCCTCAGTCTACCC	7	-	112865583-112865632	7q34	PREDICTED: Rattus norvegicus Ly6/neurotoxin 1 (predicted) (Lynx1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651306-S	ILMN_280419	RGD1311091_PREDICTED	XM_001073438.1	XM_001073438.1		314484	109480058	XM_001073438.1	RGD1311091_predicted	XP_001073438.1	ILMN_1364391	0006900575	S	1364	TCACCTCGAAGCACAGGGCAGCTGGTGAGGCCTGGTCTTGAGTGGAGATG					PREDICTED: Rattus norvegicus similar to chromosome 14 open reading frame 80 (predicted) (RGD1311091_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789031-S	ILMN_289508	CACNA1C	NM_012517.1	NM_012517.1		24239	29789031	NM_012517.1	Cacna1c	NP_036649.1	ILMN_1370304	0004480253	S	7628	TTTAGATAAGGCGGTGTGTGCCTGGGCGACTGAGCTGGGCTCCTTTCTGG	4	-	154896270-154896319	4q42	Rattus norvegicus calcium channel, voltage-dependent, L type, alpha 1C subunit (Cacna1c), mRNA.	A complex composed of proteins required for beta adrenergic receptor activation of protein kinase A. It includes the Cav 12. subunit of L-type calcium channel, protein kinase A regulatory subunit 2(PKAR2), adenyl cyclase, beta-adrenergic receptor, G-alpha-S, protein phosphatase 2A (PP2A) and caveolin 3 (CAV3) [goid 2095] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence TAS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines [goid 43198] [evidence ISS]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 15140941] [evidence IDA]; A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential [goid 5891] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [pmid 15140941] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [pmid 15140941] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [pmid 15140941] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 15140941] [evidence IDA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IMP]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence ISS]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The regulated release of growth hormone from secretory granules into the blood [goid 30252] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process that modulates the frequency, rate or extent of growth of an organ of an organism [goid 46620] [evidence ISS]; The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body [goid 60083] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence TAS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IMP]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence ISS]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS];  [goid 15270] [evidence ISS]; Interacting selectively with the enzyme protein phosphatase 2A [goid 51721] [evidence IPI]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a calcium ion by a voltage-gated channel [goid 5245] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15140941] [evidence IPI]	RATIVS302	RATIVS302
Rattus norvegicus	RefSeq	GI_62654627-S	ILMN_67338	LOC363178	XM_343518.2	XM_343518.2		363178	62654627	XM_343518.2	LOC363178	XP_343519.2	ILMN_1351889	0004150097	S	299	TTTTTCTTGGGCCATGCCCCACAACAGGCTGGATGTCGAATTGCCAATAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC363178), mRNA.					
Rattus norvegicus	RefSeq	GI_62654913-S	ILMN_62419	CNNM3_PREDICTED	XM_237093.4	XM_237093.4		301345	109485945	XM_237093.4	Cnnm3_predicted	XP_237093.4	ILMN_1366225	0003780390	S	1157	CGAGGACTGCACGCCGCTCAGCACCATCACCCGATTCTACAACCATCCAC	9	+	35456032-35456081	9q21	PREDICTED: Rattus norvegicus cyclin M3 (predicted) (Cnnm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654915	ILMN_62419	CNNM3_PREDICTED	XM_237093.4	XM_237093.4		301345	109485945	XM_237093.4	Cnnm3_predicted	XP_237093.4	ILMN_1650915	0002970040	S	2069	CCTTGGTGACAAATCCAGAGAGACAGCAGCCTTCCCAGTTCACCTTCCCC	9	+	35465065-35465093:35467071-35467091	9q21	PREDICTED: Rattus norvegicus cyclin M3 (predicted) (Cnnm3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11693145	ILMN_58645	CAP1	NM_022383.2	NM_022383.2		64185	59709466	NM_022383.2	Cap1	NP_071778.2	ILMN_1651181	0004010736	S	1468	TCCCAGTCCCTGAGCAGTTCAAGACCTTGTGGAACGGACAGAAGTTGGTC	5	-	142175486-142175535	5q36	Rattus norvegicus CAP, adenylate cyclase-associated protein 1 (yeast) (Cap1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence ISS]; The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane [goid 30864] [evidence IEA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence IEA]; Cell migration that is accomplished by extension and retraction of a pseudopodium [goid 1667] [evidence ISS]; Cell migration that is accomplished by extension and retraction of a pseudopodium [goid 1667] [evidence IEA]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence ISS]; The uptake of external materials by cells, utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles [goid 6898] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Mch1; MGC108691	Mch1; MGC108691
Rattus norvegicus	RefSeq	GI_62654862-S	ILMN_55943	LOC367216	XM_346015.2	XM_346015.2		367216	62654862	XM_346015.2	LOC367216	XP_346016.2	ILMN_1350991	0005270112	S	2301	ATAGGGGTGGGGCTGACCCTCTCTGTGAAGTGCCTGTACCCATCCATGAG				9q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B430306N03 gene (predicted) (LOC367216), mRNA.					
Rattus norvegicus	RefSeq	GI_62665832-S	ILMN_68161	COL6A1_PREDICTED	XM_215375.4	XM_215375.4		294337	109509325	XM_215375.4	Col6a1_predicted	XP_215375.4	ILMN_1356949	0002940008	S	3718	CAGCGGGAAATGCTGGCCCCTGCCTCTAGTCCTTAAAAGCAAAGGTGCTA	20	+	12338232-12338281	20p12	PREDICTED: Rattus norvegicus procollagen, type VI, alpha 1 (predicted) (Col6a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591891-S	ILMN_272807	CRHR1	NM_030999.1	NM_030999.1		58959	13591891	NM_030999.1	Crhr1	NP_112261.1	ILMN_1371683	0002340156	S	1993	CCAAGACCTGAGGCCGGGGAGATGATGCAAGCTCACTGACGAGCCAGTCT				10q32.1	Rattus norvegicus corticotropin releasing hormone receptor 1 (Crhr1), mRNA.	A type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm [goid 5771] [evidence IDA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; A cell projection part that is part of an axon [goid 33267] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by modulation of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP [goid 7188] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IMP]; Any process that reduces appetite [goid 32099] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IMP]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IMP]; A change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48266] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with the corticotrophin-releasing factor family of ligands, including the urocortins, to initiate a change in cell activity [goid 15056] [evidence ISS]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IPI]; Combining with corticotropin-releasing hormone to initiate a change in cell activity [goid 43404] [evidence IDA]; Interacting selectively with corticotropin-releasing hormone, a polypeptide hormone involved in the stress response. It is released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland [goid 51424] [evidence IDA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577544-S	ILMN_270650	OLR671	NM_001001061.1	NM_001001061.1		405949	47577544	NM_001001061.1	Olr671	NP_001001061.1	ILMN_1360116	0005270504	S	665	TCTCTCTGAGAGCCCACAGTTCTGAAGGTCGACGGAAAGCTCTTTCCACC	3	-	73217655-73217704	3q24	Rattus norvegicus olfactory receptor 671 (Olr671), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr671	Olr671
Rattus norvegicus	RefSeq	GI_47575942-S	ILMN_277341	OLR1490	NM_001000718.1	NM_001000718.1		404970	47575942	NM_001000718.1	Olr1490	NP_001000718.1	ILMN_1371052	0006860673	S	777	CATATGTCCATCAGCTAATAACCCTACAGTCGGGGAGATCGTCATGGCCC	10	+	60854593-60854642	10q24	Rattus norvegicus olfactory receptor 1490 (Olr1490), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1490	Olr1490
Rattus norvegicus	RefSeq	GI_62664178-S	ILMN_68667	RGD1564290_PREDICTED	XM_574121.2	XM_574121.2		498837	109506413	XM_574121.2	RGD1564290_predicted	XP_574121.1	ILMN_1362582	0000070039	S	162	AAGGTTGACATTCGCTGGTAAGCAGCTGGAAGGTGGCCGTACTTTGTCTG	18	-	25059759-25059808	18p12	PREDICTED: Rattus norvegicus similar to ribosomal protein S27a (predicted) (RGD1564290_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657025-S	ILMN_61183	LOC303517	XM_239343.3	XM_239343.3		303517	62657025	XM_239343.3	LOC303517	XP_239343.3	ILMN_1362884	0006520280	S	2041	CATGTGAGCTTTGGGGGAGATGCTGAGATGCGGGACAGGAATAGGCCCTC				10q31	PREDICTED: Rattus norvegicus similar to C-terminal tensin-like (predicted) (LOC303517), mRNA.					
Rattus norvegicus	RefSeq	GI_62656934-S	ILMN_55780	LOC497991	XM_573188.1	XM_573188.1		497991	62656934	XM_573188.1	LOC497991	XP_573188.1	ILMN_1354875	0005050092	S	5369	CACCTTTGGGAGGTGACCAGTGGAAGCATGGGCAAGGAAGGGACTTGGCA				10q31	PREDICTED: Rattus norvegicus similar to peroxisome proliferator-activated receptor binding protein (LOC497991), mRNA.					
Rattus norvegicus	RefSeq	GI_62665357-S	ILMN_279848	RGD1309651_PREDICTED	XM_001078912.1	XM_001078912.1		361424	109508987	XM_001078912.1	RGD1309651_predicted	XP_001078912.1	ILMN_1350558	0003190435	S	616	CTCTCTGAGCAGCTGGATGGGGACAGCCAAATGGGCCCTGGACTAAGACA				19q12	PREDICTED: Rattus norvegicus similar to 1190005I06Rik protein (predicted) (RGD1309651_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57012357-S	ILMN_264761	LOC683649	XM_001066890.1	XM_001066890.1		683649	109482975	XM_001066890.1	LOC683649	XP_001066890.1	ILMN_1370668	0006660504	S	451	CACACCAATGCAGTGAGCATTTCCGTCATCAGCAGTTCCACGACTGGGGC					PREDICTED: Rattus norvegicus similar to type II keratin Kb36 (LOC683649), mRNA.	A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence IEA]		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576542-S	ILMN_262982	OLR1635	NM_001000970.1	NM_001000970.1		405325	47576542	NM_001000970.1	Olr1635	NP_001000970.1	ILMN_1359782	0001990097	S	11	CCCTCCTCGGATATTTCCTCAGATATGTAGATCCTATGAACCTATCAACG	15	-	26698797-26698846	15p14	Rattus norvegicus olfactory receptor 1635 (Olr1635), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1635	Olr1635
Rattus norvegicus	RefSeq	GI_57114309-S	ILMN_263796	WFDC9	NM_001008868.1	NM_001008868.1		408228	57114309	NM_001008868.1	Wfdc9	NP_001008868.1	ILMN_1365089	0003190546	S	110	TACAGCCACCGGCAAGGTTCTGTGGGAGGAGGTGCACGAAGGTGCAGAAA	3	-	155676879-155676928	3q42	Rattus norvegicus WAP four-disulfide core domain 9 (Wfdc9), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62667459	ILMN_63867	LOC501650	XM_577045.1	XM_577045.1		501650	62667459	XM_577045.1	LOC501650	XP_577045.1	ILMN_1650178	0003850390	S	1031	CGGGAGTTGGCATTGGCAATTTCTTTGGTCTCATTGAGCTTAAGTCCGAG					PREDICTED: Rattus norvegicus similar to LRRG00124 (LOC501650), mRNA.					
Rattus norvegicus	RefSeq	GI_51948369-S	ILMN_263893	TAX1BP1	NM_001004199.1	NM_001004199.1		246244	51948369	NM_001004199.1	Tax1bp1	NP_001004199.1	ILMN_1367271	0005900605	S	2562	AAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATGCC				4q24	Rattus norvegicus Tax1 (human T-cell leukemia virus type I) binding protein 1 (Tax1bp1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	MGC94031; Aa1076	MGC94031; Aa1076
Rattus norvegicus	RefSeq	GI_62640708-S	ILMN_50507	RGMA_PREDICTED	XM_218791.3	XM_218791.3		308739	62640708	XM_218791.3	Rgma_predicted	XP_218791.2	ILMN_1373275	0005690138	S	2137	TCCAGCTACTGTGGATGTGATTGAGGTGCTGCTTCCGAGGACCTGCCTGG				1q31	PREDICTED: Rattus norvegicus RGM domain family, member A (predicted) (Rgma_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662883-S	ILMN_289313	RATNP-3B	XM_001074118.1	XM_001074118.1		498659	109504442	XM_001074118.1	RatNP-3b	XP_001074118.1	ILMN_1351494	0005080079	S	164	CAGGCGTGACCTGCTCTTGTAGAACCTCAAGCTGTCGTTTTGGAGAAAGG					PREDICTED: Rattus norvegicus defensin RatNP-3 precursor (RatNP-3b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62667121-S	ILMN_281940	RGD1561552_PREDICTED	XM_001060114.1	XM_001060114.1		302367	109512208	XM_001060114.1	RGD1561552_predicted	XP_001060114.1	ILMN_1372529	0001410039	S	1836	CCGGTTCCGTCGTAAAGCAATGGGATATCATTCAGGAAAATCAGACAGCG				Xq31	PREDICTED: Rattus norvegicus similar to WASP family 1 (predicted) (RGD1561552_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647936-S	ILMN_67492	LOC497793	XM_579732.1	XM_579732.1		497793	62647936	XM_579732.1	LOC497793	XP_579732.1	ILMN_1361601	0003450609	S	3951	GGCCTCCAGGCTAAAGCATCTAAACCCAAAAGCCAATCTGCTGAGGCAGC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_199207 (LOC497793), mRNA.					
Rattus norvegicus	RefSeq	GI_46485500-S	ILMN_299086	CDH15	NM_207613.1	NM_207613.1		361432	46485500	NM_207613.1	Cdh15	NP_997496.1	ILMN_1352513	0004280292	S	2391	ACGTCCTGTGTGGACACGCCCACTCGGCCCAAACAAGGAGGCTCTCTCCT	19	+	53194504-53194553	19q12	Rattus norvegicus cadherin 15 (Cdh15), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_11560136-S	ILMN_268511	NECAB1	NM_022302.1	NM_022302.1		64169	11560136	NM_022302.1	Necab1	NP_071638.1	ILMN_1358305	0004570280	S	897	CTACGTGGAGAGCGCTTCAGCACAAAGTGGGTGCCTGCGTATCTCTATAC	5	-	29430877-29430905:29433044-29433064	5q13	Rattus norvegicus N-terminal EF-hand calcium binding protein 1 (Necab1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms [goid 17000] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Stip-1; Necab1	Stip-1; Necab1
Rattus norvegicus	RefSeq	GI_47577806-S	ILMN_286837	OLR1227	NM_001000443.1	NM_001000443.1		300552	47577806	NM_001000443.1	Olr1227	NP_001000443.1	ILMN_1352238	0003170537	S	704	CCAAAGCCTTGGGCACTTGTGGGTCCCACATCATCACTGCTAGCCTCTTT	8	+	40440791-40440840	8q22	Rattus norvegicus olfactory receptor 1227 (Olr1227), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-40448854-40449786_ORF; Olr1227	ratchr8-40448854-40449786_ORF; Olr1227
Rattus norvegicus	RefSeq	GI_16758599-S	ILMN_279238	RGS14	NM_053764.1	NM_053764.1		114705	16758599	NM_053764.1	Rgs14	NP_446216.1	ILMN_1361939	0005080333	S	2663	TGTTTTCAGAATCTCTCTCCCCAAGGCATAGGATATAGAAGGCAGGGGGG	17	-	15293244-15293293	17p14	Rattus norvegicus regulator of G-protein signaling 14 (Rgs14), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence ISS]	Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]	 [goid 5057] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]	MGC108631	MGC108631
Rattus norvegicus	RefSeq	GI_62658827-S	ILMN_50291	DHX37_PREDICTED	XM_213772.4	XM_213772.4		288647	109495852	XM_213772.4	Dhx37_predicted	XP_213772.4	ILMN_1374853	0001450685	S	3458	GCCGAGTACTGTGAGTGGCTCCCAAAGGCTATGCACGGCGACGTTGAGAA	12	+	32308335-32308384	12q14	PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 37 (predicted) (Dhx37_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639348-S	ILMN_302284	CAPNS1	NM_017118.1	NM_017118.1		29156	67514515	NM_017118.1	Capns1	NP_058814.1	ILMN_1357622	0002120280	S	490	GTCGGAGCATGGTGGCTGTTATGGATAGTGACACCACAGGCAAGCTGGGC	1	+	85522433-85522458:85525424-85525447	1q21	Rattus norvegicus calpain, small subunit 1 (Capns1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IMP]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IMP]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	Capn4	Capn4
Rattus norvegicus	RefSeq	GI_56790288-S	ILMN_299222	EBNA1BP2	NM_001008721.1	NM_001008721.1		114021	56790288	NM_001008721.1	Ebna1bp2	NP_001008721.1	ILMN_1356091	0003840170	S	925	GGCCTGGGAAGAAAGGGGCAAACAAGAGACCCGGAAAACGTACCAGACAG	5	+	139100121-139100143:139100280-139100306	5q36	Rattus norvegicus EBNA1 binding protein 2 (Ebna1bp2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105572; Ebp2	MGC105572; Ebp2
Rattus norvegicus	RefSeq	GI_62656756-S	ILMN_264483	MRPS23_PREDICTED	XM_001081199.1	XM_001081199.1		360594	109491615	XM_001081199.1	Mrps23_predicted	XP_001081199.1	ILMN_1358151	0005290050	S	441	CCCTCTGGAAGAAGATGGCCAGAAGCAGCGTGTGCAGGTGAAACAGGAGC				10q26	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S23 (predicted) (Mrps23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638390-S	ILMN_70005	IBRDC1_PREDICTED	XM_238063.4	XM_238063.4		292188	109457665	XM_238063.4	Ibrdc1_predicted	XP_238063.4	ILMN_1365883	0000580170	S	2337	GGCTCCGTAACCGTGTGCTCGTCCATTTCCGTGTCTGTTCTCATACAGCC	1	+	26723755-26723804	1p11	PREDICTED: Rattus norvegicus IBR domain containing 1 (predicted) (Ibrdc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655669-S	ILMN_280603	RGD1560593_PREDICTED	XM_001078815.1	XM_001078815.1		501675	109489682	XM_001078815.1	RGD1560593_predicted	XP_001078815.1	ILMN_1368995	0002450056	S	680	AGGTGGACATACGCTTTGGCTGGTCCCTGGCCCTCGGCTGGATTAGCTTT				10q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930511J11 (predicted) (RGD1560593_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661773-S	ILMN_60555	LOC290396	XM_224392.3	XM_224392.3		290396	62661773	XM_224392.3	LOC290396	XP_224392.3	ILMN_1354211	0005360377	S	3347	TACAACACCAAGGGTCAACAAACTGCTCTGGTTGGAAGCCCCGGTTAGCC				15q12	PREDICTED: Rattus norvegicus similar to diaphanous-related formin; p134 mDia2 (LOC290396), mRNA.					
Rattus norvegicus	RefSeq	GI_62661966-S	ILMN_48573	LOC502015	XM_577443.1	XM_577443.1		502015	62661966	XM_577443.1	LOC502015	XP_577443.1	ILMN_1369873	0004810601	S	106	CCTGGGTGAGGAGATGGAAGCTTTGCAGTCAGAGAACAGAGGATGAAGGG					PREDICTED: Rattus norvegicus similar to erythrocyte membrane protein 3 (LOC502015), mRNA.					
Rattus norvegicus	RefSeq	GI_12831216-S	ILMN_298609	GPR27	NM_023099.1	NM_023099.1		65275	12831216	NM_023099.1	Gpr27	NP_075587.1	ILMN_1357771	0005910551	S	1001	GCATCAACCCCGTGGTGTGTTTCCTCTTCAACCGGGAGCTGAGGGACTGT	4	+	134542534-134542583	4q34	Rattus norvegicus G protein-coupled receptor 27 (Gpr27), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Sreb1	Sreb1
Rattus norvegicus	RefSeq	GI_47576030-S	ILMN_276036	OLR95	NM_001001024.1	NM_001001024.1		405909	47576030	NM_001001024.1	Olr95	NP_001001024.1	ILMN_1368721	0000870446	S	702	AGCAAGTCTTAAAGCCTTAGGCACCTGTGGCTCCCATGTCTGTGTAATCC	1	-	161107502-161107551	1q32	Rattus norvegicus olfactory receptor 95 (Olr95), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr95	Olr95
Rattus norvegicus	RefSeq	GI_62664160-S	ILMN_67788	POLR2D_PREDICTED	XM_344659.3	XM_344659.3		364834	109506406	XM_344659.3	Polr2d_predicted	XP_344660.2	ILMN_1370347	0001660348	S	788	GGGCTGCTATGGTCAAATGTGCTGCCATCCTGAACTAGGGAGGTAGACCG	18	+	24212186-24212235	18p12	PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide D (predicted) (Polr2d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649375-A	ILMN_262670	SPATA6	NM_134392.1	NM_134392.1		171413	19705506	NM_134392.1	Spata6	NP_599219.1	ILMN_1376570	0005860632	S	2108	CCAGTTTGTGACAAGGCTATCCTGCCACGATCCTGTCACCATTGACAAAC	5	+	133348796-133348845	5q35	Rattus norvegicus spermatogenesis associated 6 (Spata6), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		Hash	Hash
Rattus norvegicus	RefSeq	GI_13591875-S	ILMN_284978	TG	NM_030988.1	NM_030988.1		24826	13591875	NM_030988.1	Tg	NP_112250.1	ILMN_1359992	0000870632	S	8243	GCACAGTTAACCAAGAGTGGAGAGGAAGACTTGGAAGTGGGGCCTGGGTC	7	+	104220536-104220585	7q33	Rattus norvegicus thyroglobulin (Tg), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence IDA]; The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence TAS]; The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones [goid 6590] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus [goid 9268] [evidence IDA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence IEA]; The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side [goid 45056] [evidence IDA]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]	Tgn	Tgn
Rattus norvegicus	RefSeq	GI_8394445-S	ILMN_279262	TGFBR3	NM_017256.1	NM_017256.1		29610	8394445	NM_017256.1	Tgfbr3	NP_058952.1	ILMN_1354031	0001940446	S	3634	TTCGGTGGTCAGCGAGGGGATTAGCAGGGTGATGCCTGTGTGTGGCCATA	14	+	3239989-3240038	14p22	Rattus norvegicus transforming growth factor, beta receptor III (Tgfbr3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IDA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence NAS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence TAS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The aggregation, arrangement and bonding together of a ligand-bound type II transforming growth factor beta (TGF-beta) receptor dimer with a type I TGF-beta receptor dimer, following ligand binding, to form a heterotetrameric TGF-beta receptor complex [goid 7181] [evidence IMP]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IMP]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity [goid 30511] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus [goid 32354] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein binding [goid 43393] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the movement of a cell [goid 51271] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood [goid 60216] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence ISS]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence TAS]; Combining with transforming growth factor beta to initiate a change in cell activity [goid 5024] [evidence IDA]; Interacting selectively with a type II transforming growth factor beta receptor [goid 5114] [evidence ISS]; Interacting selectively with the transforming growth factor beta receptor [goid 5160] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues [goid 5539] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]; Combining with an extracellular or intracellular messenger, and in cooperation with a nearby primary receptor, initiating a change in cell activity [goid 15026] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IDA]; Interacting selectively with fibroblast growth factor 2 [goid 48603] [evidence IDA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IDA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IDA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence NAS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]	betaglycan	betaglycan
Rattus norvegicus	RefSeq	GI_62647708-S	ILMN_56657	SMYD5_PREDICTED	XM_232134.4	XM_232134.4		312503	109472285	XM_232134.4	Smyd5_predicted	XP_232134.4	ILMN_1360641	0003060181	S	1009	CACTGCCCTGGAGGATATTGAGCCAGGCGAGCAATTAAGCTACCTCAGAG	4	+	119699211-119699241:119699390-119699408	4q34	PREDICTED: Rattus norvegicus SET and MYND domain containing 5 (predicted) (Smyd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394046-S	ILMN_291144	PKN1	NM_017175.1	NM_017175.1		29355	8394046	NM_017175.1	Pkn1	NP_058871.1	ILMN_1361954	0004780273	S	2744	AAAACAGCCTTTCTTCAGGACTCTGGACTGGGATGCCCTGCTGGCCCGTC	19	+	26159813-26159833:26160196-26160224	19q11	Rattus norvegicus protein kinase N1 (Pkn1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell [goid 6972] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol [goid 4697] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	PAK-1; Prkcl1	PAK-1; Prkcl1
Rattus norvegicus	RefSeq	GI_62718610-S	ILMN_49034	LOC363404	XM_343732.2	XM_343732.2		363404	62718610	XM_343732.2	LOC363404	XP_343733.2	ILMN_1373403	0004200717	S	61	GAAGCCAGCAGCAAAAGATAAAGGACAAATTGGATTCGGAAGAGGCGGTG					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC363404), mRNA.					
Rattus norvegicus	RefSeq	GI_62640709-S	ILMN_50600	CHD2_PREDICTED	XM_218790.4	XM_218790.4		308738	109458883	XM_218790.4	Chd2_predicted	XP_218790.4	ILMN_1362308	0003830484	S	6187	AGGCCCCAGAATTACCACCAGCAGGATTTCCGACGAATGTCTGACCACAG	1	-	128609984-128610033	1q31	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 2 (predicted) (Chd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653893-S	ILMN_279309	NEDD4A	XM_001053672.1	XM_001053672.1		25489	109484934	XM_001053672.1	Nedd4a	XP_001053672.1	ILMN_1353264	0000780093	S	4918	TACCCCAGTGTGTAGTGACAGTCTGGAGGGACCCTGGGTGGAACACCACA				8q24	PREDICTED: Rattus norvegicus neural precursor cell expressed, developmentally down-regulated gene 4A (Nedd4a), mRNA.					
Rattus norvegicus	RefSeq	GI_62645820-S	ILMN_268123	STARD7_PREDICTED	XM_001081093.1	XM_001081093.1		296128	109470785	XM_001081093.1	Stard7_predicted	XP_001081093.1	ILMN_1370199	0002570632	S	2560	CTCCCCCAGTGTTTCTGTCCTTTCAGTTGTTGGCAGAGAGTTGCATCGAG				3q36	PREDICTED: Rattus norvegicus START domain containing 7 (predicted) (Stard7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27704895-S	ILMN_278946	RGD1561993_PREDICTED	XM_001073022.1	XM_001073022.1		296377	109471356	XM_001073022.1	RGD1561993_predicted	XP_001073022.1	ILMN_1361271	0005690070	S	3	GGGTGTTCGCAATGAGTTTGCCCTCAATCCCAAGCCTTTTCTGAATGGAC				3q42	PREDICTED: Rattus norvegicus similar to Small nuclear ribonucleoprotein F (snRNP-F) (predicted) (RGD1561993_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027455-S	ILMN_286701	KISS1R	NM_023992.1	NM_023992.1		78976	13027455	NM_023992.1	Kiss1r	NP_076482.1	ILMN_1362850	0005700050	S	912	GATCTGGGCTCACTGCATGTCCTACAGCAATTCTGCGCTCAACCCGCTGC	7	-	11298069-11298118	7q11	Rattus norvegicus KISS1 receptor (Kiss1r), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK [goid 186] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IDA]; The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence ISS]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence ISS]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IPI]; Interacting selectively and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators) [goid 42923] [evidence IDA]	Gpr54	Gpr54
Rattus norvegicus	RefSeq	GI_62647142-S	ILMN_275850	RGD1565474_PREDICTED	XM_001072497.1	XM_001072497.1		362353	109473419	XM_001072497.1	RGD1565474_predicted	XP_001072497.1	ILMN_1371202	0002100338	S	2927	TCTCCCAGCAAGTGCAGAAGAATCTGGCTCCGTTCTTTGAGGCCTGGGCC				4q23	PREDICTED: Rattus norvegicus similar to mKIAA0738 protein (predicted) (RGD1565474_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576002-S	ILMN_263791	OLR1450	NM_001000774.1	NM_001000774.1		405049	47576002	NM_001000774.1	Olr1450	NP_001000774.1	ILMN_1351164	0006510575	S	575	CGTCCCAATATGAGCATACAGTCCTCGTGAGTGGCCTTGTCTTTCTCTTA	10	+	44911858-44911907	10q22	Rattus norvegicus olfactory receptor 1450 (Olr1450), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1450	Olr1450
Rattus norvegicus	RefSeq	GI_62078602-S	ILMN_279151	ACTRT2	NM_001013937.1	NM_001013937.1		298671	62078602	NM_001013937.1	Actrt2	NP_001013959.1	ILMN_1367601	0001660110	S	1078	TTCAGGGGCTGGATGACAGGCTCCTAAAAGAACTGGAACAGCTGGCTTCC	5	-	171474038-171474087	5q36	Rattus norvegicus actin-related protein T2 (Actrt2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656930-S	ILMN_55562	RGD1563128_PREDICTED	XM_573187.2	XM_573187.2		497990	109488918	XM_573187.2	RGD1563128_predicted	XP_573187.1	ILMN_1371287	0001400181	S	1027	TCTTAGAATCCAGGACTACAGCTTTGGGGGGCCGTGGAGGGGGGAGGAGT	10	-	86751495-86751544	10q31	PREDICTED: Rattus norvegicus similar to ADP-ribosylation-like factor 12 protein (predicted) (RGD1563128_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645477-S	ILMN_276984	RGD1310754_PREDICTED	XM_001079537.1	XM_001079537.1		311264	109470419	XM_001079537.1	RGD1310754_predicted	XP_001079537.1	ILMN_1369788	0006660301	S	5037	CATCGAGCACTATCGGAACAAGCTACGCCTGAAAGCCAAGAGGAAGGGGT					PREDICTED: Rattus norvegicus similar to G2 (predicted) (RGD1310754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665666-A	ILMN_285081	SLC39A7	NM_001008885.1	NM_001008885.1		294281	57114293	NM_001008885.1	Slc39a7	NP_001008885.1	ILMN_1376697	0005390280	S	2008	GGGTCCTCCAAGGTCCATCTCCCTCTGAACTGGTTAGTGATGGCTTCAGG	20	+	4964423-4964472	20p12	Rattus norvegicus solute carrier family 39 (zinc transporter), member 7 (Slc39a7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells [goid 30001] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of metal ions from one side of a membrane to the other [goid 46873] [evidence IEA]	Rt1Ke4; MGC94153; Ke4	Rt1Ke4; MGC94153; Ke4
Rattus norvegicus	RefSeq	Rn.8807	ILMN_290813	GCNT2	NM_001001511.2	NM_001001511.2		306860	71534291	NM_001001511.2	Gcnt2	NP_001001511.1	ILMN_1530510	0003710079	S	3702	TTAAAGGGAATTACTTCGTGTAAACTTTCTTGTTTCTTCTACTGAAAAAT				17p12	Rattus norvegicus glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Ignt	Ignt
Rattus norvegicus	RefSeq	GI_68163369	ILMN_273433	RGD1311863	NM_001024974.1	NM_001024974.1		293871	68163369	NM_001024974.1	RGD1311863	NP_001020145.1	ILMN_1530494	0002360438	S	561	TCAAAAATTTTCCAAAAGAGAGATGGGATCCTTCTAAAGTAAATATTCTG	1	+	222281349-222281373:222291137-222291161	1q43	Rattus norvegicus similar to RIKEN cDNA 2410127L17 (RGD1311863), mRNA.				MGC109119	MGC109119
Rattus norvegicus	RefSeq	GI_58000410-A	ILMN_276829	TBX5	NM_001009964.1	NM_001009964.1		304514	58000410	NM_001009964.1	Tbx5	NP_001009964.1	ILMN_1376253	0004810632	S	1543	GCATGGTGCCAGAGTGGAGCGAGAATAGCTAAGGGCCGACCTATGCCAGA	12	-	37956658-37956676:37956677-37956707	12q16	Rattus norvegicus T-box 5 (Tbx5), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence IEA]; The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form. The forelimbs are the front limbs of an animal [goid 35115] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the arm are generated and organized. Morphogenesis pertains to the creation of form. In humans, the arms are the two upper limbs of the body from the shoulder to the hand [goid 35117] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the arm are generated and organized. Morphogenesis pertains to the creation of form. In humans, the arms are the two upper limbs of the body from the shoulder to the hand [goid 35117] [evidence ISS]; The process by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35136] [evidence ISS]; The process by which the anatomical structures of the forelimb are generated and organized. Morphogenesis pertains to the creation of form [goid 35136] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast [goid 51891] [evidence ISS]; The process whose specific outcome is the progression of the pericardium over time, from its formation to the mature structure. The pericardium is a double-walled sac that contains the heart and the roots of the aorta, vena cava and the pulmonary artery [goid 60039] [evidence ISS]; The process whose specific outcome is the progression of the pericardium over time, from its formation to the mature structure. The pericardium is a double-walled sac that contains the heart and the roots of the aorta, vena cava and the pulmonary artery [goid 60039] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell proliferation [goid 60044] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell proliferation [goid 60044] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62648352-S	ILMN_263336	CPNE9	NM_001024982.1	NM_001024982.1		297516	68163392	NM_001024982.1	Cpne9	NP_001020153.1	ILMN_1370899	0003710092	S	1283	TCTATGGGCCCACTTACTTTGCGCCTGTCATCAACCAGGTGGCCAGGGCT	4	+	149185714-149185728:149186074-149186108	4q42	Rattus norvegicus copine family member IX (Cpne9), mRNA.				RGD1309212; MGC109370	RGD1309212; MGC109370
Rattus norvegicus	RefSeq	GI_62664752-S	ILMN_59235	LOC502184	XM_577641.1	XM_577641.1		502184	62664752	XM_577641.1	LOC502184	XP_577641.1	ILMN_1369630	0002480288	S	121	ATTGGCAAGGCGACCTGGGCCTTCGCAGCTCCCATCTTGTTCTCAGCAGT					PREDICTED: Rattus norvegicus similar to AU040576 protein (LOC502184), mRNA.					
Rattus norvegicus	RefSeq	GI_62652246	ILMN_59542	LOC503145	XM_578666.1	XM_578666.1		503145	62652246	XM_578666.1	LOC503145	XP_578666.1	ILMN_1650722	0001850487	S	117	TGACAGCGCGTGGCTCAATGACAACGATGAGAGCAAAGCCAGAAGGCATG					PREDICTED: Rattus norvegicus similar to sentrin 18 (LOC503145), mRNA.					
Rattus norvegicus	RefSeq	GI_62654424-S	ILMN_56220	RGD1311848_PREDICTED	XM_217285.4	XM_217285.4		301008	109483960	XM_217285.4	RGD1311848_predicted	XP_217285.4	ILMN_1366012	0004920600	S	1353	TCGAAGGCACTGTGACAAGGGGAACCTTCGGGTCAAGCCCCAGCAAGGAA	8	-	113625752-113625801	8q32	PREDICTED: Rattus norvegicus similar to prolyl-4-hydroxylase-alpha NE2 CG9720-PA (predicted) (RGD1311848_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649777-S	ILMN_69690	RGD1308967_PREDICTED	XM_232748.4	XM_232748.4		313019	109475608	XM_232748.4	RGD1308967_predicted	XP_232748.2	ILMN_1374837	0002100050	S	1334	CCTGGCGACGTCCTGGCTCAGATGGGGTTGTACCAGCCACCGTTAATTAC	5	-	151605633-151605682	5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC16491 (predicted) (RGD1308967_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19705460-S	ILMN_269131	XCL1	NM_134361.1	NM_134361.1		171371	19705460	NM_134361.1	Xcl1	NP_599188.1	ILMN_1358408	0005890717	S	257	GCAGGGCCAGTGCCAGCAAGAGCAAGGCTGAAACTATTCCCACACAAGCC	13	-	80691233-80691282	13q23	Rattus norvegicus chemokine (C motif) ligand 1 (Xcl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which calcium ions sequestered in the endoplasmic reticulum or mitochondria are released into the cytosolic compartment [goid 51209] [evidence ISS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence TAS]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Ltn; Scyc1	Ltn; Scyc1
Rattus norvegicus	RefSeq	GI_62659016-S	ILMN_61097	RGD1560195_PREDICTED	XM_222209.4	XM_222209.4		304521	109495981	XM_222209.4	RGD1560195_predicted	XP_222209.4	ILMN_1358282	0003520707	S	1266	AAGCTCCTTTGCACCTCCCAGAATTACGGGGTCAGAGCCACAGGGCAGCA	12	+	39508710-39508730:39508861-39508889	12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1560195_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647331-S	ILMN_61962	LOC500141	XM_575493.1	XM_575493.1		500141	62647331	XM_575493.1	LOC500141	XP_575493.1	ILMN_1369230	0002060369	S	924	TCTGCTGAGCTGGTGCAGTGCTTCCTGCCCTTGCTGGATGAAGTCAAAAG				4q24	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC500141), mRNA.					
Rattus norvegicus	RefSeq	GI_62644941-S	ILMN_56746	CIZ1_PREDICTED	XM_216034.4	XM_216034.4		296639	109468047	XM_216034.4	Ciz1_predicted	XP_216034.3	ILMN_1357503	0001850315	S	2203	TGCAGAAATACAAAGCCAAGAACCCCAGCCCTCCTACCCGGCCTGTGAGC	3	+	11503782-11503786:11504129-11504173	3p11	PREDICTED: Rattus norvegicus CDKN1A interacting zinc finger protein 1 (predicted) (Ciz1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981157	ILMN_297824	LHB	NM_001033975.1	NM_001033975.1		25329	77157790	NM_001033975.1	Lhb	NP_001029147.1	ILMN_1650059	0006020066	S	167	AATGAGTTCTGCCCAGTCTGCATCACCTTCACCACCAGCATCTGTGCCGG	1	+	95893372-95893421	1q22	Rattus norvegicus luteinizing hormone beta (Lhb), transcript variant 2, mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978458-S	ILMN_290156	ADRB1	NM_012701.1	NM_012701.1		24925	6978458	NM_012701.1	Adrb1	NP_036833.1	ILMN_1375010	0002680112	S	1090	ATCATCTACTGCCGCAGCCCCGACTTCCGCAAGGCTTTCCAGCGCCTGCT	1	+	263026744-263026793	1q55	Rattus norvegicus adrenergic, beta-1-, receptor (Adrb1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process by which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction [goid 1996] [evidence IEA]; The process by which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction [goid 1996] [evidence ISS]; Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings [goid 1997] [evidence IEA]; Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings [goid 1997] [evidence ISS]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IEA]; The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence ISS]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence IEA]; A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change [goid 2025] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism [goid 9409] [evidence ISS]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence IEA]; Any homeostatic process by which an organism produces heat, thereby raising its internal temperature [goid 31649] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; The response of an organism to a perceived external threat [goid 42596] [evidence IEA]; The response of an organism to a perceived external threat [goid 42596] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria [goid 50873] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4940] [evidence IDA];  [goid 4940] [evidence IEA];  [goid 4940] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine [goid 51379] [evidence TAS]; Interacting selectively with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine [goid 51380] [evidence TAS]	RATB1AR; B1AR	RATB1AR; B1AR
Rattus norvegicus	RefSeq	GI_62654686-S	ILMN_275072	LOC363188	XM_001061882.1	XM_001061882.1		363188	109486656	XM_001061882.1	LOC363188	XP_001061882.1	ILMN_1368220	0003610154	S	5290	GTCAGGATTTCTCAGGAAGCAGCCTGGCCACGGGAGACCTGCACATCTTC				9q12	PREDICTED: Rattus norvegicus similar to ubiquitin protein ligase E3 component n-recognin 2, transcript variant 3 (LOC363188), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654688-S	ILMN_275072	LOC363188	XM_001061882.1	XM_001061882.1		363188	109486656	XM_001061882.1	LOC363188	XP_001061882.1	ILMN_1353143	0002570167	S	7896	AGGAGCCTGGCATTAGCAGAGGGTGGCCTGTGTTTCTTTCACTCCTGGGA				9q12	PREDICTED: Rattus norvegicus similar to ubiquitin protein ligase E3 component n-recognin 2, transcript variant 3 (LOC363188), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658402	ILMN_301979	RGD1561029_PREDICTED	XM_001067264.1	XM_001067264.1		304252	109496505	XM_001067264.1	RGD1561029_predicted	XP_001067264.1	ILMN_1650364	0002630739	S	1902	TGAGACTGAAAAGACCCACAACCCTCCGTCCCCAGAAGGCCCCGTTGTTG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930434E21 (predicted) (RGD1561029_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576280-S	ILMN_274119	OLR1293	NM_001000460.1	NM_001000460.1		300599	47576280	NM_001000460.1	Olr1293	NP_001000460.1	ILMN_1355776	0002760692	S	120	CACTGTGGCTGGGAACCTGGGCATAATTACATTGATTGGGCTCAGTTCGC	8	-	41643899-41643948	8q22	Rattus norvegicus olfactory receptor 1293 (Olr1293), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1293	Olr1293
Rattus norvegicus	RefSeq	GI_16758623-S	ILMN_285232	IFNGR1	NM_053783.1	NM_053783.1		116465	16758623	NM_053783.1	Ifngr1	NP_446235.1	ILMN_1366851	0005720215	S	1616	CTGCCCGGTCTACTCCGCAAATGCCAAGACTGCCAGAGGGATGAACAGTC	1	+	14864559-14864608	1p12	Rattus norvegicus interferon gamma receptor 1 (Ifngr1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence IEA]	Ifngr	Ifngr
Rattus norvegicus	RefSeq	GI_62641422-S	ILMN_62474	RGD1563481_PREDICTED	XM_577827.2	XM_577827.2		502357	109459162	XM_577827.2	RGD1563481_predicted	XP_577827.2	ILMN_1363869	0002370129	S	1072	CGCCAAGCCATATTCCGCCTGTTCCGATTCAAGGGCTCAAGGGGCTACAG	1	+	160721890-160721939	1q32	PREDICTED: Rattus norvegicus similar to olfactory receptor Olfr574 (predicted) (RGD1563481_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651507-S	ILMN_67499	LOC503075	XM_578595.1	XM_578595.1		503075	62651507	XM_578595.1	LOC503075	XP_578595.1	ILMN_1369017	0006370017	S	7	CCCAGGTCCTCTCAATCAGTGATCACATTGAACAGAGACCACTGGCCATG				6q33	PREDICTED: Rattus norvegicus similar to Immunoglobulin heavy chain (gamma polypeptide) (LOC503075), mRNA.					
Rattus norvegicus	RefSeq	GI_62667041-S	ILMN_63418	KIF4	XM_343797.3	XM_343797.3		84393	109510902	XM_343797.3	Kif4	XP_343798.2	ILMN_1357601	0001170100	S	4766	GATCACATCAGCTTAATGGACGAGTGGGATGGTGACCTGGCTCGACTCCG	X	+	88741861-88741910	Xq31	PREDICTED: Rattus norvegicus kinesin family member 4 (Kif4), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62661699-S	ILMN_56520	PIWIL2_PREDICTED	XM_224334.4	XM_224334.4		306011	109501860	XM_224334.4	Piwil2_predicted	XP_224334.4	ILMN_1371888	0001500176	S	2970	TTGGCCTGGTACCATCCGAGTTCCAGCTCCTTGCAAGTATGCCCACAAGC	15	-	50759693-50759742	15p11	PREDICTED: Rattus norvegicus piwi like homolog 2 (Drosophila) (predicted) (Piwil2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648766-S	ILMN_62676	LOC500430	XM_575792.2	XM_575792.2		500430	109474696	XM_575792.2	LOC500430	XP_575792.1	ILMN_1356014	0001980647	S	2151	GGGTCCTGTGTCAACCGAGGCACTCAAACCAAGAAGTCTGCGAGAGGTGG	5	-	49101375-49101424	5q21	PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 6 (LOC500430), mRNA.					
Rattus norvegicus	RefSeq	GI_62661274-S	ILMN_49137	RGD1565884_PREDICTED	XM_223941.4	XM_223941.4		305835	109501526	XM_223941.4	RGD1565884_predicted	XP_223941.4	ILMN_1357893	0006760050	S	1612	GGACTGAGTTGGGACGACAGAGGTGGGGCAGGCGATGACAGATACCACTG	15	+	24369292-24369341	15p14	PREDICTED: Rattus norvegicus similar to Pellino protein homolog 2 (Pellino 2) (predicted) (RGD1565884_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576708-S	ILMN_269869	OLR1722	NM_001001117.1	NM_001001117.1		406016	47576708	NM_001001117.1	Olr1722	NP_001001117.1	ILMN_1374921	0002650156	S	562	GACACTCATCTCACAGAGAGCCTGATGATGGGTTTGTCTGCAGTTTTGGG	20	-	1161284-1161333	20p12	Rattus norvegicus olfactory receptor 1722 (Olr1722), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1722	Olr1722
Rattus norvegicus	RefSeq	GI_62638402-S	ILMN_47898	LOC361620	XM_341898.2	XM_341898.2		361620	62638402	XM_341898.2	LOC361620	XP_341899.2	ILMN_1353316	0003990500	S	414	CAGAAAAAGCTACTGGTCCAAAACATACAGGAAATCTAGGACTCAAGGAA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC361620), mRNA.					
Rattus norvegicus	RefSeq	GI_62660450	ILMN_48649	LOC498362	XM_579819.1	XM_579819.1		498362	62660450	XM_579819.1	LOC498362	XP_579819.1	ILMN_1650374	0004560722	S	380	GATCTTCCACATCCCAGGAAAGTGCTCTACCACGAAGCTTCCAGCCCTGG					PREDICTED: Rattus norvegicus LOC498362 (LOC498362), mRNA.					
Rattus norvegicus	RefSeq	GI_62644846-S	ILMN_51806	PKN3_PREDICTED	XM_216019.3	XM_216019.3		296619	62644846	XM_216019.3	Pkn3_predicted	XP_216019.3	ILMN_1352264	0002850167	S	2771	AGGAGAGCGGGACGCCGAGGAGATCAAGGTTCAGCCATTCTTCAGGACCA					PREDICTED: Rattus norvegicus protein kinase N3 (predicted) (Pkn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656468	ILMN_68310	LOC287459	XM_220572.3	XM_220572.3		287459	62656468	XM_220572.3	LOC287459	XP_220572.3	ILMN_1649857	0003060332	S	104	AGCTGCACTCCTGGGAGCAGAAAGCAGAGAGTGGGGGCTGGAGGAAATGG					PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC287459), mRNA.					
Rattus norvegicus	RefSeq	GI_62657588-S	ILMN_282373	RGD1305062	XM_001070573.1	XM_001070573.1		304132	109493937	XM_001070573.1	RGD1305062	XP_001070573.1	ILMN_1362861	0003450372	S	923	TGCCAGGGGGTGTGGGGATGTGTTTCAGATGTTCTTTGGCGTGGAAGGAC				11q11	PREDICTED: Rattus norvegicus similar to open reading frame 5 (RGD1305062), mRNA.					
Rattus norvegicus	RefSeq	GI_55926212-S	ILMN_276849	GSTT1	NM_053293.2	NM_053293.2		25260	55926212	NM_053293.2	Gstt1	NP_445745.1	ILMN_1350035	0004670270	S	692	CACCTGCTGACCCCGTCATAAAGCAAAAGCTGATGCCCAGAGTGCTGACC	20	-	13604562-13604611	20p12	Rattus norvegicus glutathione S-transferase theta 1 (Gstt1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence ISS]; The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle [goid 6749] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IDA]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence ISS]; Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group [goid 4364] [evidence IEA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	GSTYRS	GSTYRS
Rattus norvegicus	RefSeq	GI_62657038-S	ILMN_61808	SUI1-RS1_PREDICTED	XM_213456.4	XM_213456.4		287703	109489011	XM_213456.4	Sui1-rs1_predicted	XP_213456.3	ILMN_1370359	0002850717	S	1073	GGCTACCTTTCCAGAGAAGTCATGGACATTAGCTCACCACCAGGGCAGTC	10	+	89257629-89257678	10q32.1	PREDICTED: Rattus norvegicus suppressor of initiator codon mutations, related sequence 1 (S. cerevisiae) (predicted) (Sui1-rs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29789105-S	ILMN_262893	FGB	NM_020071.1	NM_020071.1		24366	29789105	NM_020071.1	Fgb	NP_064456.1	ILMN_1354112	0002230528	S	1272	GCAGTGCTCAAAAGAAGATGGCGGCGGCTGGTGGTATAACAGATGCCATG	2	-	174768450-174768499	2q34	Rattus norvegicus fibrinogen, B beta polypeptide (Fgb), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds [goid 5577] [evidence IEA]	The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other [goid 30674] [evidence IEA]	Ab1-181; Ac1-581; Ab1-216	Ab1-181; Ac1-581; Ab1-216
Rattus norvegicus	RefSeq	GI_62647491-S	ILMN_69250	RGD1560845_PREDICTED	XM_578277.2	XM_578277.2		502779	109472106	XM_578277.2	RGD1560845_predicted	XP_578277.2	ILMN_1355762	0005360253	S	252	AAGAGCATCCCCTGAGAAAAAGGCCACTGAGAACATCTTGCTGCTGGTGA	4	+	86820076-86820125	4q24	PREDICTED: Rattus norvegicus similar to vomeronasal V1r-type receptor V1rc42 (predicted) (RGD1560845_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663574-S	ILMN_57337	LRRC16_PREDICTED	XM_225336.3	XM_225336.3		306941	62663574	XM_225336.3	Lrrc16_predicted	XP_225336.3	ILMN_1366292	0001050692	S	4126	CAGGGTGTAAGTAACCCAGGCTGATCTCAAACTCCTATATGTGGAGGATG				17p11	PREDICTED: Rattus norvegicus leucine rich repeat containing 16 (predicted) (Lrrc16_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718682-S	ILMN_53209	LOC367648	XM_346239.2	XM_346239.2		367648	62718682	XM_346239.2	LOC367648	XP_346240.2	ILMN_1369545	0005080066	S	982	GGGGGATCGCCCTACCTCTCTTTGGTCATCCACAGGAGGGCTTCCCGTTT					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC367648), mRNA.					
Rattus norvegicus	RefSeq	GI_51592095-S	ILMN_281821	PPP6C	NM_133589.2	NM_133589.2		171121	51592095	NM_133589.2	Ppp6c	NP_598273.2	ILMN_1375175	0004010129	S	1426	GTCCAGTGGGCAGGATGGACTGCATATGCCTGAGTCATGTACCCTTGTCC	3	-	18966659-18966708	3q11	Rattus norvegicus protein phosphatase 6, catalytic subunit (Ppp6c), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IMP]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IMP]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93213	MGC93213
Rattus norvegicus	RefSeq	GI_62650156-S	ILMN_66507	RGD1304675_PREDICTED	XM_233728.4	XM_233728.4		313756	109475914	XM_233728.4	RGD1304675_predicted	XP_233728.4	ILMN_1365842	0002940092	S	4147	AGCTTCCTGAGACGTTCCTCCTCGCGCAGCCAGAGCCGAGTGCGTGCTAT	5	-	171786544-171786593	5q36	PREDICTED: Rattus norvegicus similar to FLJ00414 protein (predicted) (RGD1304675_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881392-S	ILMN_289501	RGD1560040_PREDICTED	XM_001066139.1	XM_001066139.1		302775	109512284	XM_001066139.1	RGD1560040_predicted	XP_001066139.1	ILMN_1370035	0001660333	S	529	CCCTCCTGCAGTAATACATCCACACATAGCAGTGACCAAGCAGGTCCCAG				Xq33	PREDICTED: Rattus norvegicus similar to ring finger protein 2 (predicted) (RGD1560040_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34876385-S	ILMN_57225	RGD1561273_PREDICTED	XM_217531.4	XM_217531.4		302093	109483287	XM_217531.4	RGD1561273_predicted	XP_217531.3	ILMN_1359489	0004050458	S	70	TCTCGCCTTTCATCAAAAATAAATGATGGACAACGAAAGCTGGCCTGGGG	8	-	39794415-39794464	8q21	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4b (predicted) (RGD1561273_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653509-S	ILMN_57225	RGD1561273_PREDICTED	XM_217531.4	XM_217531.4		302093	109483287	XM_217531.4	RGD1561273_predicted	XP_217531.3	ILMN_1358527	0006650463	S	174	GGAGGCCAACACGGAGAACACAGAAGAACAGAGACTGATTAGACAGCTGC	8	-	39793278-39793327	8q21	PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4b (predicted) (RGD1561273_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651525-S	ILMN_68297	LOC299434	XM_234680.2	XM_234680.2		299434	62651525	XM_234680.2	LOC299434	XP_234680.2	ILMN_1362920	0005360471	S	473	TAGCTACTGGATGACCTTGGTTCAGCAGACCCCTGGCAAAGCCCTGGAGT				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V region 441 precursor (LOC299434), mRNA.					
Rattus norvegicus	RefSeq	GI_62661854	ILMN_64658	LOC501982	XM_577411.1	XM_577411.1		501982	62661854	XM_577411.1	LOC501982	XP_577411.1	ILMN_1650988	0005390398	S	190	CCCAAGGAGCTAGTGTTCATCTTCTCCACTGGAAGGACTCATGGAGACTC				15p14	PREDICTED: Rattus norvegicus similar to T cell receptor alpha chain (LOC501982), mRNA.					
Rattus norvegicus	RefSeq	GI_62639464-S	ILMN_56467	LOC502319	XM_577784.1	XM_577784.1		502319	62639464	XM_577784.1	LOC502319	XP_577784.1	ILMN_2040112	0000450600	S	356	CAGCATCTCAGGCACCTGTTGGTATAGAACGGCTGTGGAGGGCAGAGGTA					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L32 (LOC502319), mRNA.					
Rattus norvegicus	RefSeq	GI_62652165-S	ILMN_55463	RGD1307051_PREDICTED	XM_235174.4	XM_235174.4		314800	109480548	XM_235174.4	RGD1307051_predicted	XP_235174.4	ILMN_1363482	0006770341	S	1821	CGCTGTGGTTGGCAAGGAAGACCCCTTGAAAGGTCATGTCCCATTAGCAC	7	-	45623196-45623245	7q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21963 (predicted) (RGD1307051_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12831218-S	ILMN_289609	NMUR1	NM_023100.1	NM_023100.1		65276	12831218	NM_023100.1	Nmur1	NP_075588.1	ILMN_1374272	0000870164	S	1190	CTGAGAACAGGGATCCAGGGTGTGAGCAAGAGACAGACCCTCCTGAATAA				9q35	Rattus norvegicus neuromedin U receptor 1 (Nmur1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence ISS]; A process whereby force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length [goid 6939] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation [goid 19226] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence ISS]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence IEA]	Combining with neuromedin U to initiate a change in cell activity [goid 1607] [evidence ISS]; Combining with neuromedin U to initiate a change in cell activity [goid 1607] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence ISS]	Gpr66	Gpr66
Rattus norvegicus	RefSeq	GI_62661150-S	ILMN_273201	RGD1306327	XM_001060583.1	XM_001060583.1		361018	109502160	XM_001060583.1	RGD1306327	XP_001060583.1	ILMN_1349232	0000730520	S	796	CCCTGGGAAACTGAAAACCCCCCGCACCCCACAGGAAAAGTCTCTGGACT				15p14	PREDICTED: Rattus norvegicus similar to downregulated in renal cell carcinoma, transcript variant 1 (RGD1306327), mRNA.					
Rattus norvegicus	RefSeq	GI_34872505-S	ILMN_62587	TAS1R1	XM_342986.2	XM_342986.2		29407	109475879	XM_342986.2	Tas1r1	XP_342987.1	ILMN_1366163	0004070315	S	2453	GCGGCGGCTTCAGCGGTTACTTCCTCCCCAAGTGCTATGTGATTCTCTGC	5	-	169256511-169256560	5q36	PREDICTED: Rattus norvegicus taste receptor, type 1, member 1 (Tas1r1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IC ]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates [goid 50917] [evidence ISS]; The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates [goid 50917] [evidence IDA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence ISS]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653829	ILMN_272369	RASL12_PREDICTED	XM_001075445.1	XM_001075445.1		315762	109484856	XM_001075445.1	Rasl12_predicted	XP_001075445.1	ILMN_1650249	0003840537	S	750	CACTGTGAAGTCATCTCGTGCCCAGAGTAAGCGCAAGGCACCCACCTTGA				8q24	PREDICTED: Rattus norvegicus RAS-like, family 12 (predicted) (Rasl12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660081-S	ILMN_68399	LOC289876	XM_223727.3	XM_223727.3		289876	62660081	XM_223727.3	LOC289876	XP_223727.3	ILMN_1362449	0001690551	S	5169	GGCAGTCTGACTCCTCCTTATACTGCCAGTGTGACAGTTGGTTACTATAG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC289876), mRNA.					
Rattus norvegicus	RefSeq	GI_57114327-S	ILMN_264083	SPINK2	NM_001008870.1	NM_001008870.1		408234	57114327	NM_001008870.1	Spink2	NP_001008870.1	ILMN_1360733	0003940022	S	1	ATGCTGAGACTGGTGCTGTTGCTCCTGGCCACAGACTTTGCAGCTTCTGA	14	+	33245183-33245225:33247083-33247089	14p11	Rattus norvegicus serine protease inhibitor, Kazal type 2 (Spink2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641744-S	ILMN_277777	RGD1560591_PREDICTED	XM_001073782.1	XM_001073782.1		361708	109463383	XM_001073782.1	RGD1560591_predicted	XP_001073782.1	ILMN_1362709	0004920253	S	1359	CCAATGGCAGCTGTCCTCAGTCTCCTACCCACTCCTTGCAAAAGAGCCCC				1q43	PREDICTED: Rattus norvegicus similar to Sorting nexin 6 (TRAF4-associated factor 2) (predicted) (RGD1560591_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865457-A	ILMN_269738	BEST1	NM_001011940.1	NM_001011940.1		293735	58865457	NM_001011940.1	Best1	NP_001011940.1	ILMN_1376749	0005390128	S	1852	GACCCAGTCAGAGGCACACAGCAGCGACACTCAAGAATATGTTCCCATGG	1	-	212432917-212432966	1q43	Rattus norvegicus bestrophin 1 (Best1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence IEA]; The directed movement of chloride ions across an epithelium [goid 30321] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62650341-S	ILMN_54718	LOC500617	XM_575991.1	XM_575991.1		500617	62650341	XM_575991.1	LOC500617	XP_575991.1	ILMN_1360353	0004210301	S	1201	CACCCAGGAGGAGTAGAAGGCAGGAAATAATCAAACTCGGAGCTGAAATC					PREDICTED: Rattus norvegicus similar to LRRGT00014 (LOC500617), mRNA.					
Rattus norvegicus	RefSeq	GI_62654440-S	ILMN_283467	LOC681139	XM_001060454.1	XM_001060454.1		681139	109484060	XM_001060454.1	LOC681139	XP_001060454.1	ILMN_1364156	0005050132	S	63	GCATGTGACCTCAGGGTGTGGAGGAGAGATGCATGTGACATCAGAGTGTG	8	+	120954253-120954302	8q32	PREDICTED: Rattus norvegicus similar to Keratin-associated protein 5-4 (Keratin-associated protein 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) (LOC681139), mRNA.					
Rattus norvegicus	RefSeq	GI_62653135-S	ILMN_268638	HOXC10	XM_001068573.1	XM_001068573.1		315338	109483022	XM_001068573.1	Hoxc10	XP_001068573.1	ILMN_1372373	0002450176	S	2207	GACTCTCCTTCCAAGGGACCTATGGTTCGTGCTTCGAGGATGCTTCCACC				7q36	PREDICTED: Rattus norvegicus homeo box C10 (Hoxc10), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence IEA]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence ISS]; The process whereby a cell becomes capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21520] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20301961-A	ILMN_301298	SNRK	NM_138833.1	NM_138833.1		170837	20301961	NM_138833.1	Snrk	NP_620188.1	ILMN_1376628	0006180315	S	2644	GACCTCCGGTGATAGGGAAACTCGATGCTCTGAGGCCCACTGGTGCCCGA				8q32	Rattus norvegicus SNF related kinase (Snrk), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IDA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660894-S	ILMN_61011	RGD1559774_PREDICTED	XM_577351.2	XM_577351.2		501926	109499952	XM_577351.2	RGD1559774_predicted	XP_577351.2	ILMN_1366121	0006040008	S	337	AGGCTAAGCTCAGCCCCGAGTAGCAGGGCTGAACCCATCAGAACCACTGT	14	+	85381048-85381073:85385857-85385880	14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610510L01 (predicted) (RGD1559774_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34881840-S	ILMN_48244	LOC367968	XM_346373.1	XM_346373.1		367968	34881840	XM_346373.1	LOC367968	XP_346374.1	ILMN_1348836	0000540603	S	449	AGCTGTCCGTCCCTACCCAGAAAGGCTGTGGTGCTTTGATCTAGGAGCCC					PREDICTED: Rattus norvegicus similar to Wdtc1 protein (LOC367968), mRNA.					
Rattus norvegicus	RefSeq	GI_11024655-S	ILMN_270647	SC65	NM_021581.1	NM_021581.1		59101	11024655	NM_021581.1	Sc65	NP_067592.1	ILMN_1365767	0004570364	S	1109	CTTCCGGAGCCTGAAAAACCTCTGTCTGATGCCGAGTTCGAAGGCGAGGG	10	-	89347737-89347786	10q32.1	Rattus norvegicus synaptonemal complex protein SC65 (Sc65), mRNA.	A proteinaceous scaffold found between homologous chromosomes during meiosis [goid 795] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62647281-S	ILMN_59442	LOC502768	XM_578266.1	XM_578266.1		502768	62647281	XM_578266.1	LOC502768	XP_578266.1	ILMN_1358972	0004670487	S	894	GCGCAAGCAGGATTTCCCCAGAGGGATCTAGAAATGTTGACGGGAACAGG					PREDICTED: Rattus norvegicus similar to Gag (LOC502768), mRNA.					
Rattus norvegicus	RefSeq	GI_56961649-S	ILMN_272984	SERPINA4	NM_145097.2	NM_145097.2		246328	56961649	NM_145097.2	Serpina4	NP_659565.2	ILMN_1352415	0006110484	S	1426	CTGACTCCCAAGAGTGGTAGAGGGAGGCGTGGGGCTAGATGGACTGGAAA	6	+	128142666-128142715	6q32	Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 (Serpina4), mRNA.			Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	MGC108582	MGC108582
Rattus norvegicus	RefSeq	GI_62657087-S	ILMN_64827	ETV4_PREDICTED	XM_340910.3	XM_340910.3		360635	109489056	XM_340910.3	Etv4_predicted	XP_340911.3	ILMN_1365088	0006400168	S	1560	GGCCTTCCCAGATAATCATCGTCCAGCTCTGAAGGCTGAGTTTGACCGGC	10	-	90809154-90809203	10q32.1	PREDICTED: Rattus norvegicus ets variant gene 4 (E1A enhancer binding protein, E1AF) (predicted) (Etv4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663761-S	ILMN_67185	LOC498786	XM_574071.1	XM_574071.1		498786	62663761	XM_574071.1	LOC498786	XP_574071.1	ILMN_1357104	0006860593	S	1389	GTCTCTTGATAGCCAAAAGGAACGGGCAGGGAATAGGACTTTGCTTAGAG				17q12.1	PREDICTED: Rattus norvegicus similar to GTP-binding protein NGB (LOC498786), mRNA.					
Rattus norvegicus	RefSeq	GI_62663869-S	ILMN_51102	LOC307073	XM_225528.3	XM_225528.3		307073	62663869	XM_225528.3	LOC307073	XP_225528.3	ILMN_1351694	0003850133	S	274	ACCTACTCTCTGGGAAGAGGAAAGCTGGTCTGCTACACCGAGGCTTCAGT				17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (predicted) (LOC307073), mRNA.					
Rattus norvegicus	RefSeq	GI_62643979-S	ILMN_52185	LOC310590	XM_227345.3	XM_227345.3		310590	62643979	XM_227345.3	LOC310590	XP_227345.3	ILMN_1353313	0000580047	S	678	ACTGCCTCTGATAACTGTCAGGAACATCAGTGCCTGGATGGTTTTGCTGG				2q34	PREDICTED: Rattus norvegicus similar to TDPOZ1; POZ 56 protein (LOC310590), mRNA.					
Rattus norvegicus	RefSeq	GI_16758435-S	ILMN_266459	KCNH4	NM_053630.1	NM_053630.1		114032	16758435	NM_053630.1	Kcnh4	NP_446082.1	ILMN_1353444	0002760100	S	3209	CCTGTCTGGGGTGGGCTTAATTACCTGCCATCCAGGGAGGAGCTGGGCTC	10	-	89679509-89679558	10q32.1	Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 4 (Kcnh4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Bec2	Bec2
Rattus norvegicus	RefSeq	GI_62646029-S	ILMN_279733	RGD1308874	NM_001034003.1	NM_001034003.1		366227	77735351	NM_001034003.1	RGD1308874	NP_001029175.1	ILMN_2038971	0001240255	S	624	CGAGACTACCTGCTTCTGGTGATGGAGGGCACTGATGATGGGCGCTTGTT	3	-	141206563-141206569:141207636-141207678	3q41	Rattus norvegicus similar to RIKEN cDNA 2310001A20 (RGD1308874), mRNA.		The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the reaction: 3-alpha(S)-strictosidine = tryptamine + secologanin [goid 16844] [evidence IEA]; Catalysis of the reaction: 3-alpha(S)-strictosidine = tryptamine + secologanin [goid 16844] [evidence IEA]	MGC125177; Ab2-305	MGC125177; Ab2-305
Rattus norvegicus	RefSeq	GI_62660768-S	ILMN_54299	MYL7_PREDICTED	XM_214074.4	XM_214074.4		289759	109500002	XM_214074.4	Myl7_predicted	XP_214074.4	ILMN_1352095	0002260064	S	277	CTTCACCGTCTTCCTCACGCTCTTCGGGGAGAAACTCAATGGGACCGACC	14	-	86568898-86568907:86569420-86569459	14q21	PREDICTED: Rattus norvegicus myosin, light polypeptide 7, regulatory (predicted) (Myl7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658674-S	ILMN_62513	LOC501823	XM_577235.1	XM_577235.1		501823	62658674	XM_577235.1	LOC501823	XP_577235.1	ILMN_1369078	0006420170	S	1382	CACAGTGGCTGTTTCTACTGTCTTGGGCTCAGTAACAGCCTTCTACTGTG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC501823), mRNA.					
Rattus norvegicus	RefSeq	GI_62655635-S	ILMN_278841	RGD1563163_PREDICTED	XM_001078307.1	XM_001078307.1		497856	109489660	XM_001078307.1	RGD1563163_predicted	XP_001078307.1	ILMN_1353426	0001740497	S	288	TTGCCTGTTCCCAGGAAAGTACGTGATGGTCATGGGGGTGGTTCAGGCCT				10q11	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC24665 (predicted) (RGD1563163_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718279-S	ILMN_270429	LOC689878	XM_001072354.1	XM_001072354.1		689878	109512919	XM_001072354.1	LOC689878	XP_001072354.1	ILMN_1351839	0002060541	S	887	TCAGGAGTCCCTGATGACCAACAACATCCTGAATGAAAACAGCACTTGAG	Un|NW_047848.1	+	326207-326241:326360-326374		PREDICTED: Rattus norvegicus similar to Myosin-9B (Myosin IXb) (Unconventional myosin-9b) (LOC689878), mRNA.	A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]		Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651396-S	ILMN_61704	LOC299467	XM_234745.3	XM_234745.3		299467	62651396	XM_234745.3	LOC299467	XP_234745.3	ILMN_1360292	0000630035	S	326	GACACCTGAGGACTCTGCGGTCTATTACTGTATTCCTTGCTCCCAAGCAA				6q33	PREDICTED: Rattus norvegicus similar to Ig heavy chain V-I region HG3 precursor (LOC299467), mRNA.					
Rattus norvegicus	RefSeq	GI_62652035-S	ILMN_49042	TMCC3_PREDICTED	XM_235072.4	XM_235072.4		314751	109480483	XM_235072.4	Tmcc3_predicted	XP_235072.2	ILMN_1355918	0004730575	S	1372	GCAGACAGATGCCGTGAATGCCAAGGTCCTGCTGGGGAAGTGCATCAACG	7	+	31760313-31760362	7q13	PREDICTED: Rattus norvegicus transmembrane and coiled-coil domain family 3 (predicted) (Tmcc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576114-S	ILMN_266310	OLR1394	NM_001001091.1	NM_001001091.1		405985	47576114	NM_001001091.1	Olr1394	NP_001001091.1	ILMN_1369682	0003190632	S	690	GGCTGGACGCAGAAAGGCTTTTGGGACATGTGGGTCTCACCTTCTAGTGA	10	+	34864056-34864105	10q22	Rattus norvegicus olfactory receptor 1394 (Olr1394), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1394	Olr1394
Rattus norvegicus	RefSeq	GI_62647277-S	ILMN_59282	LOC500130	XM_575482.1	XM_575482.1		500130	62647277	XM_575482.1	LOC500130	XP_575482.1	ILMN_1363331	0001400465	S	2482	CAGGGCCTTGGCTTTCCGCTGTCAGTACAAACCTTCAGCACCTCTGGAGG				4q24	PREDICTED: Rattus norvegicus similar to Evx1 (LOC500130), mRNA.					
Rattus norvegicus	RefSeq	GI_62660133-S	ILMN_49135	LOC305166	XM_223200.3	XM_223200.3		305166	62660133	XM_223200.3	LOC305166	XP_223200.3	ILMN_1372132	0000510519	S	4088	AGGTTCAATGGCGACGTCCAAAGCACAATGGCAACCGGCCTCTGAATGCC				14p22	PREDICTED: Rattus norvegicus similar to hypothetical protein 4933408F15 (LOC305166), mRNA.					
Rattus norvegicus	RefSeq	GI_47577472-S	ILMN_282814	OLR477	NM_001000304.1	NM_001000304.1		295747	47577472	NM_001000304.1	Olr477	NP_001000304.1	ILMN_1352088	0003610671	S	667	GCTGCTATCCTGAGAATCCGCTCTACTCAAGGAAGACGCAAGGCCATCTC	3	+	69279903-69279952	3q24	Rattus norvegicus olfactory receptor 477 (Olr477), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr477	Olr477
Rattus norvegicus	RefSeq	GI_62649989-S	ILMN_57941	RGD1307838_PREDICTED	XM_233629.3	XM_233629.3		298617	109475799	XM_233629.3	RGD1307838_predicted	XP_233629.3	ILMN_1353090	0005390717	S	51	GCCCTTAGGCACAAACTACCTACCAGAGACAAGAACACACCCTCATGTGG	5	-	162583297-162583346	5q36	PREDICTED: Rattus norvegicus similar to KIAA1096 protein (predicted) (RGD1307838_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717958-S	ILMN_57755	LOC302280	XM_229904.3	XM_229904.3		302280	62717958	XM_229904.3	LOC302280	XP_229904.3	ILMN_1369165	0007050035	S	5	CCTTCTAGACAAAGAACAAGGGGGCACCTGGAAAGAAGCAGATCTGGCTG					PREDICTED: Rattus norvegicus similar to PYM protein (LOC302280), mRNA.					
Rattus norvegicus	RefSeq	GI_19424175-S	ILMN_301680	TSPAN8	NM_133526.1	NM_133526.1		171048	19424175	NM_133526.1	Tspan8	NP_598210.1	ILMN_1363496	0007000600	S	667	GTCAGAGTTTAAGTGCTGTGGCTTGAGATTTGGAGCTGCTGACTGGGGAA	7	+	55120773-55120780:55128689-55128730	7q22	Rattus norvegicus tetraspanin 8 (Tspan8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation [goid 30195] [evidence IDA]		Tm4sf3; CO-29	Tm4sf3; CO-29
Rattus norvegicus	RefSeq	GI_62662176-S	ILMN_294902	ITIH1_PREDICTED	XM_001060219.1	XM_001060219.1		306251	109503792	XM_001060219.1	Itih1_predicted	XP_001060219.1	ILMN_1371797	0004590026	S	2626	GCAAGGACCCCAGACATGGAACAGAAGTGTCTTGCTGGTTTGTCCACGAC				16p16	PREDICTED: Rattus norvegicus inter-alpha trypsin inhibitor, heavy chain 1 (predicted) (Itih1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651775-S	ILMN_59024	PRTN3_PREDICTED	XM_234882.3	XM_234882.3		314615	62651775	XM_234882.3	Prtn3_predicted	XP_234882.2	ILMN_1353184	0004060035	S	780	CTTCTGTGCTCCGGGCAGCCTAAAACTGGGGCGACCACTAGCAGACTCCA				7q11	PREDICTED: Rattus norvegicus proteinase 3 (predicted) (Prtn3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078458-S	ILMN_296662	CCDC45	NM_001013862.1	NM_001013862.1		287766	62078458	NM_001013862.1	Ccdc45	NP_001013884.1	ILMN_1356404	0002850487	S	2612	CAGAGATCCCAGGCTCAGACATTACACAAGGTGAAGAGGGAGCTGAGAGC	10	+	96167807-96167824:96168050-96168081	10q32.1	Rattus norvegicus coiled-coil domain containing 45 (Ccdc45), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62646773-S	ILMN_57838	LOC500001	XM_580042.1	XM_580042.1		500001	62646773	XM_580042.1	LOC500001	XP_580042.1	ILMN_1370784	0001770364	S	291	AAAGCTCGACAGTCCCCACAAAGGCGCACAGGGGAGACCCAGAGAAGGAA					PREDICTED: Rattus norvegicus LOC500001 (LOC500001), mRNA.					
Rattus norvegicus	Unigene	Rn.56195	ILMN_161352	RN.56195	Rn.56195		Rn.56195		49576072	CO394156			ILMN_1530323	0007100136	S	49	TAAGGCCATGTCCCTCATCTCACAGGCCTATGTGGAGAAATACAAATTCA					AGENCOURT_26728793 NIH_MGC_255 Rattus norvegicus cDNA clone IMAGE:7317358 5', mRNA					
Rattus norvegicus	RefSeq	GI_25742806-S	ILMN_278827	RASSF5	NM_019365.1	NM_019365.1		54355	25742806	NM_019365.1	Rassf5	NP_062238.1	ILMN_1368621	0006130050	S	3279	CTGAGGTTGAGCCGCTGGAAACGTGGAGTTCCTTAAGTCTCAGAGGGGTC	13	-	44121911-44121960	13q13	Rattus norvegicus Ras association (RalGDS/AF-6) domain family 5 (Rassf5), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Nore1; Maxp1	Nore1; Maxp1
Rattus norvegicus	RefSeq	GI_62650230-S	ILMN_267389	CRIM1_PREDICTED	XM_001064272.1	XM_001064272.1		298744	109478966	XM_001064272.1	Crim1_predicted	XP_001064272.1	ILMN_1358960	0000110220	S	4855	AGGGCACCGGCGAAGGACAGCAGGCATTTCCAGGGGCTACACTTCATTGT				6q11	PREDICTED: Rattus norvegicus cysteine-rich motor neuron 1 (predicted) (Crim1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641186-S	ILMN_50877	LOC499252	XM_574545.1	XM_574545.1		499252	62641186	XM_574545.1	LOC499252	XP_574545.1	ILMN_1371427	0006350176	S	3662	AACTCAGTGGCCCAACAGGCTGAAGGGAGGTCACTAAGCAGCTTCGAGTC					PREDICTED: Rattus norvegicus similar to PI-3-kinase-related kinase SMG-1 isoform 1 (LOC499252), mRNA.					
Rattus norvegicus	RefSeq	GI_62659548-S	ILMN_56048	TDRD5_PREDICTED	XM_222763.4	XM_222763.4		289129	109498056	XM_222763.4	Tdrd5_predicted	XP_222763.4	ILMN_1350113	0002450471	S	2132	CTTGCTCTTTGGCGTGGGTGAGGCCGGCAGAGGAACACTGGACATCCAAA	13	-	71261853-71261871:71268752-71268782	13q21	PREDICTED: Rattus norvegicus tudor domain containing 5 (predicted) (Tdrd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647479-S	ILMN_68712	TCF3_PREDICTED	XM_232064.4	XM_232064.4		312451	109472189	XM_232064.4	Tcf3_predicted	XP_232064.4	ILMN_1363479	0003840070	S	1582	CACTAAGCTGCCCCCGTTCTACGCAGGCTGTCTCGGGACTCCAAGTAGTA	4	-	106128460-106128504:106128505-106128509	4q33	PREDICTED: Rattus norvegicus transcription factor 3 (predicted) (Tcf3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650830-S	ILMN_275376	TMEM30B_PREDICTED	XM_001080722.1	XM_001080722.1		314224	109479525	XM_001080722.1	Tmem30b_predicted	XP_001080722.1	ILMN_1359911	0002650100	S	1620	GCGCCAGGCCCCTCAGGTTCTGATACAGTAAGGCCAGGATGAGCAAGCTT				6q24	PREDICTED: Rattus norvegicus transmembrane protein 30B (predicted) (Tmem30b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655667-S	ILMN_278995	RGD1305773_PREDICTED	XR_009226.1	XR_009226.1		287044	109489662	XR_009226.1	RGD1305773_predicted		ILMN_1355246	0003140037	S	2981	ATGCCCCCACAACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTG				10q11	PREDICTED: Rattus norvegicus similar to CG12753-PA (predicted) (RGD1305773_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647487-S	ILMN_272124	SCRN1	NM_001025063.1	NM_001025063.1		502776	68163564	NM_001025063.1	Scrn1	NP_001020234.1	ILMN_1362923	0002510025	S	1255	GACCAGGAGCAAGGCCGCACACTGAGGAAGACCATGCTGGAGTTGGAGAA	4	-	82913134-82913178:82916131-82916135	4q24	Rattus norvegicus secernin 1 (Scrn1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]	Catalysis of the hydrolysis of a dipeptide [goid 16805] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654903-S	ILMN_61711	LOC501124	XM_580163.1	XM_580163.1		501124	62654903	XM_580163.1	LOC501124	XP_580163.1	ILMN_1368976	0001660026	S	828	CTCATCAGAGGATGACAATCCGTGAGCCATGGGGATCAATGGGAACTCCG					PREDICTED: Rattus norvegicus LOC501124 (LOC501124), mRNA.					
Rattus norvegicus	RefSeq	GI_62646380-S	ILMN_59279	SLC2A10_PREDICTED	XM_345471.2	XM_345471.2		366251	62646380	XM_345471.2	Slc2a10_predicted	XP_345472.2	ILMN_1369964	0000450546	S	1964	CTCCTGAGGGGTCCGTCTGCTTGGAAGATGCTGGGACATTGGTTTCTGCA				3q42	PREDICTED: Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 10 (predicted) (Slc2a10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61889120-S	ILMN_47918	MGC94190	NM_001004204.2	NM_001004204.2		288616	61889120	NM_001004204.2	MGC94190	NP_001004204.1	ILMN_1358419	0006020044	S	1488	TGGCTGATGCCTAATCCCACAGCTCCCCATTTTCTGAGAGACCAAGAACC	12	-	27469910-27469946:27469947-27469959	12q13	Rattus norvegicus similar to 0610007L01Rik protein (MGC94190), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47576202-S	ILMN_300354	OLR1341	NM_001000482.1	NM_001000482.1		300643	47576202	NM_001000482.1	Olr1341	NP_001000482.1	ILMN_1359398	0003780164	S	883	GTGAAGGGGGCCCTAAGAAAAGCCATTACTTGTGCAAACACCCATCATGC	8	+	43140421-43140470	8q22	Rattus norvegicus olfactory receptor 1341 (Olr1341), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1341	Olr1341
Rattus norvegicus	RefSeq	GI_62659477-S	ILMN_49868	RGD1308584_PREDICTED	XM_213895.4	XM_213895.4		289083	109497965	XM_213895.4	RGD1308584_predicted	XP_213895.1	ILMN_1352015	0006520110	S	819	GTTTACACCAAGGAGACGTTCAGAGTGGCGGAGGCTGGCTGTGTCTCTGC	13	-	67321093-67321142	13q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5730449L18 (predicted) (RGD1308584_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51036647-S	ILMN_267936	BOK	NM_017312.2	NM_017312.2		29884	51036647	NM_017312.2	Bok	NP_059008.1	ILMN_1353990	0002850537	S	1118	GAAGGTGGCTAACGCAGAAGCTGCCAGGGGTGTTTACTGTCCCTAAAGGC	9	+	92980739-92980788	9q36	Rattus norvegicus BCL2-related ovarian killer (Bok), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [pmid 9356461] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62644509-I	ILMN_56933	SH3GLB1_PREDICTED	XM_575053.1	XM_575053.1		292156	62644509	XM_575053.1	Sh3glb1_predicted	XP_575053.1	ILMN_1375781	0006130092	S	893	CGGCCCGCCCTGAAGGAGATAACATTATGATTTGGGCAGAGGAAGTGACA				2q44	PREDICTED: Rattus norvegicus SH3-domain GRB2-like B1 (endophilin) (predicted) (Sh3glb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27672793-S	ILMN_262695	RGD1307767_PREDICTED	XM_220584.1	XM_220584.1		287414	27672793	XM_220584.1	RGD1307767_predicted	XP_220584.1	ILMN_1351913	0000540019	S	1705	AGCAACTCCAGTGACTCTGAGCAGGGGTCCGAAGGGGACTGGCTTGTGAG	10	+	55309550-55309599	10q24	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC32231 (predicted) (RGD1307767_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576410-S	ILMN_281687	OLR1569	NM_001000042.1	NM_001000042.1		287969	47576410	NM_001000042.1	Olr1569	NP_001000042.1	ILMN_1367399	0006660139	S	869	GCCTGAGGAATAAGGAGGTCCTAGGGGCGATGACAAGAGTTATTGGTAGT	11	-	83668714-83668763	11q23	Rattus norvegicus olfactory receptor 1569 (Olr1569), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1569	Olr1569
Rattus norvegicus	RefSeq	GI_13928683-S	ILMN_262966	AMY2	NM_031502.1	NM_031502.1		497039	13928683	NM_031502.1	Amy2	NP_113690.1	ILMN_1363412	0002370070	S	802	GGCCGCGTGACAGAATTCAAGTATGGTGCAAAACTTGGCACAGTTATTCG	2	-	209514202-209514251	2q41	Rattus norvegicus amylase 2, pancreatic (Amy2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of the endohydrolysis of 1,4-alpha-D-glucosidic linkages in polysaccharides containing three or more 1,4-alpha-linked D-glucose units [goid 4556] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718207-S	ILMN_48100	LOC501323	XM_576735.1	XM_576735.1		501323	62718207	XM_576735.1	LOC501323	XP_576735.1	ILMN_1359687	0004730452	S	589	AGAAACTGCAGGAGACATGGCATAGGATGGATCCCAGGAAGAGAGCCCCC					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501323), mRNA.					
Rattus norvegicus	RefSeq	GI_62646061-S	ILMN_294522	LOC682483	XM_001061691.1	XM_001061691.1		682483	109471055	XM_001061691.1	LOC682483	XP_001061691.1	ILMN_1360479	0006400577	S	121	GCGCACGCCCTACCGCTCTCGAGGTTTTGGCATTTCTCAAGCAGGCTTCA					PREDICTED: Rattus norvegicus similar to zinc finger, CCHC domain containing 3 (LOC682483), mRNA.					
Rattus norvegicus	RefSeq	GI_62647367-S	ILMN_63638	SMARCAD1_PREDICTED	XM_231860.4	XM_231860.4		312398	109472134	XM_231860.4	Smarcad1_predicted	XP_231860.4	ILMN_1353174	0004060441	S	3690	GGGAAGTATGCCAGCGGATATAGCCACGCTACTGAAAACGTCAATGGGCC	4	+	94609108-94609157	4q31	PREDICTED: Rattus norvegicus SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` (predicted) (Smarcad1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651125-S	ILMN_48382	FLRT2_PREDICTED	XM_234361.3	XM_234361.3		299236	62651125	XM_234361.3	Flrt2_predicted	XP_234361.3	ILMN_1352982	0006510722	S	4650	TATTGAATGGCATCCACAACAGTATTGGGAGTCAAAGTGGTACCGGGGGG				6q31-q32	PREDICTED: Rattus norvegicus fibronectin leucine rich transmembrane protein 2 (predicted) (Flrt2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652896-S	ILMN_69513	LOC500916	XM_576325.1	XM_576325.1		500916	62652896	XM_576325.1	LOC500916	XP_576325.1	ILMN_1371641	0006770133	S	871	TGCCAGCCCAGGTTACTGTATCCTGCAAAACTCTCAATTAACATTGATGG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500916), mRNA.					
Rattus norvegicus	RefSeq	GI_62649227-S	ILMN_267076	RGD1560729_PREDICTED	XM_001055827.1	XM_001055827.1		366411	109476745	XM_001055827.1	RGD1560729_predicted	XP_001055827.1	ILMN_1356910	0000060075	S	388	AGGGGAACTGCAAAGGCCAATGCTGGTGCTGGCAAAAAGTGAGTGGAGAC				5q32	PREDICTED: Rattus norvegicus similar to ribosomal protein S24 (predicted) (RGD1560729_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717884-S	ILMN_53830	LOC363317	XM_343657.2	XM_343657.2		363317	62717884	XM_343657.2	LOC363317	XP_343658.2	ILMN_1350863	0006840110	S	1371	CCAGTGGACAGTAGCAAAGGACAGTTTATTCATCCCTGGCAGGTAATGGG					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC363317), mRNA.					
Rattus norvegicus	RefSeq	GI_47576880-S	ILMN_298769	OLR222	NM_001000201.1	NM_001000201.1		293368	47576880	NM_001000201.1	Olr222	NP_001000201.1	ILMN_1370643	0002470717	S	408	GACACAGAGGGTTTGTGTTTTGCTAGTTGTAGGATCCTGGGCTAGTGGAA	1	-	164207076-164207125	1q33	Rattus norvegicus olfactory receptor 222 (Olr222), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr222	Olr222
Rattus norvegicus	RefSeq	GI_34865011-S	ILMN_51907	LOC365512	XM_345066.1	XM_345066.1		365512	34865011	XM_345066.1	LOC365512	XP_345067.1	ILMN_1368365	0000130309	S	75	GGTGACTGTTGCTGTCCCGTGGTGGTCACTGTTGTGGTTCATGGGTATGG					PREDICTED: Rattus norvegicus similar to nucleolar protein family A, member 2 (LOC365512), mRNA.					
Rattus norvegicus	RefSeq	GI_62718380-S	ILMN_56484	LOC317106	XM_229813.3	XM_229813.3		317106	62718380	XM_229813.3	LOC317106	XP_229813.3	ILMN_1375223	0001990008	S	3595	CGAGGTTCAGGAGCACTTGGAAGAAGTGCTGGGTGGGGAGGGTCTTCTGA					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC317106), mRNA.					
Rattus norvegicus	RefSeq	GI_62644515-S	ILMN_282776	CLCA3_PREDICTED	XM_001079217.1	XM_001079217.1		308015	109467755	XM_001079217.1	Clca3_predicted	XP_001079217.1	ILMN_1365394	0005290286	S	3331	GCCAGGGACTGGGCCTGTTGTGGACTTTTGAAACCTCATATCCCACCCCC				2q44	PREDICTED: Rattus norvegicus chloride channel calcium activated 3 (predicted) (Clca3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13399335-S	ILMN_297789	RABEP2	NM_030585.1	NM_030585.1		80754	13399335	NM_030585.1	Rabep2	NP_085074.1	ILMN_1361874	0003060411	S	1798	AGGTCTCAGAATGGAGTCCGTCAGCTGCAAACCTGGACAGTGGTGTCCCG				1q36	Rattus norvegicus rabaptin, RAB GTPase binding effector protein 2 (Rabep2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]	Fra; MP13	Fra; MP13
Rattus norvegicus	RefSeq	GI_62648443-S	ILMN_68714	LOC502920	XM_578421.1	XM_578421.1		502920	62648443	XM_578421.1	LOC502920	XP_578421.1	ILMN_1350478	0006620195	S	602	GCACACACCCAAGGTGAAAGAAAACAAGGAAAACTCCTGGGAAGCTGCGG				4q44	PREDICTED: Rattus norvegicus similar to amino acid feature: Rod protein domain, aa 266 .. 468; amino acid feature: globular protein domain, aa 32 .. 265 (LOC502920), mRNA.					
Rattus norvegicus	RefSeq	GI_62664676-S	ILMN_54310	CTDP1_PREDICTED	XM_225717.4	XM_225717.4		291414	109506838	XM_225717.4	Ctdp1_predicted	XP_225717.4	ILMN_1362879	0006980044	S	3010	AGCAACGATGATGAGGAGGGCAGCAGTTCGGAAGCAGACGAGATGGCCGC	18	-	77305455-77305504	18q12.3	PREDICTED: Rattus norvegicus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (predicted) (Ctdp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_30842814-S	ILMN_268707	DISC1	NM_175596.2	NM_175596.2		307940	30842814	NM_175596.2	Disc1	NP_783186.2	ILMN_1349009	0003450040	S	2301	TCTCGGCGCCATGCACGGTCACGATGAAGCTCTCTTTCAGTCTCTCCAGG	19	+	55449253-55449302	19q12	Rattus norvegicus disrupted in schizophrenia 1 (Disc1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_56605669-S	ILMN_282084	LRRC59	NM_001008280.1	NM_001008280.1		287633	56605669	NM_001008280.1	Lrrc59	NP_001008281.1	ILMN_1368841	0000730575	S	2665	CTCATAGATCCCTGGCTGGTTGAGGCAGCTCAGTGGCTGGGCGTAGTCAA	10	+	83278784-83278807	10q31	Rattus norvegicus leucine rich repeat containing 59 (Lrrc59), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1305092; MGC105677	RGD1305092; MGC105677
Rattus norvegicus	RefSeq	GI_62663663-S	ILMN_281591	RGD1307214_PREDICTED	XM_001056271.1	XM_001056271.1		307024	109505885	XM_001056271.1	RGD1307214_predicted	XP_001056271.1	ILMN_1360330	0002810037	S	2239	GAAGCAATACACAGAGAGAACGAAGCAGGTGAAGCCCTGTGCCTCTGCGG				17q12.1	PREDICTED: Rattus norvegicus similar to CG4854-PA (predicted), transcript variant 1 (RGD1307214_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646190	ILMN_292469	RGD1306152_PREDICTED	XM_001060198.1	XM_001060198.1		311529	109471030	XM_001060198.1	RGD1306152_predicted	XP_001060198.1	ILMN_1650142	0002640164	S	3989	ATGCACAGCAGGAAGAATACAAGCAGCAGCTGAAGGCCAGGGAGGACCAG				3q41	PREDICTED: Rattus norvegicus similar to KIAA0980 protein (predicted) (RGD1306152_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662724-S	ILMN_55222	LOC364582	XM_577517.1	XM_577517.1		364582	62662724	XM_577517.1	LOC364582	XP_577517.1	ILMN_2039472	0000990367	S	52	ATGCCCATGCTGCTGACTGACCAGGGCCAGAACTAGAAGGAGGAGGTGGT				16p11	PREDICTED: Rattus norvegicus similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) (LOC364582), mRNA.					
Rattus norvegicus	RefSeq	GI_62660292-S	ILMN_262879	GRSF1	XM_001073361.1	XM_001073361.1		305256	109500411	XM_001073361.1	Grsf1	XP_001073361.1	ILMN_1352686	0000610079	S	2617	GGGGGAAACAATCTTAAGTCTCCTCCTCTGCTTTTCCAGTGGGGTAGCCA				14p22	PREDICTED: Rattus norvegicus G-rich RNA sequence binding factor 1 (Grsf1), mRNA.		The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62647671-S	ILMN_54622	RGD1562258_PREDICTED	XM_575576.2	XM_575576.2		500225	109472226	XM_575576.2	RGD1562258_predicted	XP_575576.1	ILMN_1366878	0006840315	S	1337	TGCAGCCTACAGTGCTACCGCATCAACCTGCAACTACGGCTGGGAGGACC	4	-	117333990-117334039	4q34	PREDICTED: Rattus norvegicus similar to PAP-1 binding protein (predicted) (RGD1562258_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652654-S	ILMN_265070	SCRT1_PREDICTED	XM_001075117.1	XM_001075117.1		366951	109482483	XM_001075117.1	Scrt1_predicted	XP_001075117.1	ILMN_1364091	0002650095	S	3913	ACGGACGGACAGACCTCCTTCCTAAGCACAATAGCACCAGCTCCTCGGAG				7q34	PREDICTED: Rattus norvegicus scratch homolog 1, zinc finger protein (Drosophila) (predicted) (Scrt1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652091-S	ILMN_51639	NAV3_PREDICTED	XM_235113.3	XM_235113.3		314813	62652091	XM_235113.3	Nav3_predicted	XP_235113.3	ILMN_1363538	0002480138	S	1110	CACGATGTGACAGTGGACGCAGACAGGTAATCCCTCGGCACGGAAGATGC					PREDICTED: Rattus norvegicus neuron navigator 3 (predicted) (Nav3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649268-S	ILMN_273301	TM2D1_PREDICTED	XM_001059680.1	XM_001059680.1		362545	109476816	XM_001059680.1	Tm2d1_predicted	XP_001059680.1	ILMN_1370811	0006770239	S	667	GAGGAACAGATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGG				5q33	PREDICTED: Rattus norvegicus TM2 domain containing 1 (predicted) (Tm2d1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666922-S	ILMN_56254	ZFX_PREDICTED	XM_346318.3	XM_346318.3		367832	109510835	XM_346318.3	Zfx_predicted	XP_346319.3	ILMN_1364255	0006370605	S	3387	CTTTTGTGTCCCCAGCATCGCTGCGTAAAAGAGCAGTGGCTGGGTTTGTG	X	-	81433185-81433234	Xq31	PREDICTED: Rattus norvegicus zinc finger protein X-linked (predicted) (Zfx_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_26080337-S	ILMN_267565	ABCG8	NM_130414.2	NM_130414.2		155192	26080337	NM_130414.2	Abcg8	NP_569098.2	ILMN_1374644	0003140180	S	4648	AGCCATAGAACCTGTCAGTACGCTGTGCTGGTGTGAAAACTGCCCCAACC				6q12	Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 8 (Abcg8), mRNA.	A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter [goid 43190] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The directed movement of phospholipids into, out of, within or between cells. Phospholipids are any lipids containing phosphoric acid as a mono- or diester [goid 15914] [evidence ISS]; The directed movement of sterols into, out of, within or between cells. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 15918] [evidence TAS]; The directed movement of sterols into, out of, within or between cells. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 15918] [evidence ISS]; Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption [goid 30300] [evidence TAS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of sterol within an organism or cell [goid 55092] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of sterols into, out of, within or between cells. Sterol are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 15248] [evidence IMP]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]	sterolin 2	sterolin 2
Rattus norvegicus	RefSeq	GI_62666272-S	ILMN_66455	RGD1560386_PREDICTED	XM_215422.4	XM_215422.4		294521	109509619	XM_215422.4	RGD1560386_predicted	XP_215422.4	ILMN_1353120	0002100670	S	3017	ATGCAGCCGGGAACCTGAAACCCAAGCTCCCCTTCCTAAGTGTGAGGAGG	20	+	45402058-45402107	20q12	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560386_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651822-S	ILMN_61437	LOC314584	XM_234835.3	XM_234835.3		314584	62651822	XM_234835.3	LOC314584	XP_234835.3	ILMN_1352840	0002450609	S	1833	GCTTTTCCTGCCTTGGGTGATTGTCAGAGACATGAGCAAATCCACACTGG				7q11	PREDICTED: Rattus norvegicus similar to ZFP-like protein (predicted) (LOC314584), mRNA.					
Rattus norvegicus	RefSeq	GI_62641279-S	ILMN_276143	RGD1565169_PREDICTED	XM_001079912.1	XM_001079912.1		499264	109462865	XM_001079912.1	RGD1565169_predicted	XP_001079912.1	ILMN_1360117	0005550537	S	1139	GGCGACCAGGAGACAGGGGACAGCTTTGAGGATGAGGAGAGGCAAGACTT				1q36	PREDICTED: Rattus norvegicus similar to apolipoprotein B48 receptor (predicted) (RGD1565169_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655908-S	ILMN_61267	ARHGDIG_PREDICTED	XM_340775.3	XM_340775.3		360500	109487927	XM_340775.3	Arhgdig_predicted	XP_340776.1	ILMN_1353039	0001050301	S	772	GGAGCATTGGCACGTGGTCTGTACGTGGTCAGGTCCCTCTTCACCGATGA	10	-	15466378-15466427	10q12	PREDICTED: Rattus norvegicus Rho GDP dissociation inhibitor (GDI) gamma (predicted) (Arhgdig_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655002-S	ILMN_265399	IL18R1_PREDICTED	XM_001059279.1	XM_001059279.1		301365	109487032	XM_001059279.1	Il18r1_predicted	XP_001059279.1	ILMN_1360135	0003390520	S	1512	CCTGATGCCTGCCAAAGCCGTCAAGCCATGGAGAGAAGAATCAGAGGCCC				9q21	PREDICTED: Rattus norvegicus interleukin 18 receptor 1 (predicted) (Il18r1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641320	ILMN_280207	RGD1306928_PREDICTED	XM_001080215.1	XM_001080215.1		293509	109462912	XM_001080215.1	RGD1306928_predicted	XP_001080215.1	ILMN_1650314	0003610605	S	1236	CCAGTGGGTCCATCGGCCAGGAGCTAAAGGTCACAGGGACAAAAAAGCCA					PREDICTED: Rattus norvegicus similar to hypothetical protein MGC13138 (predicted) (RGD1306928_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_23463316-S	ILMN_57803	DHRS4	NM_153315.2	NM_153315.2		266686	76781469	NM_153315.2	Dhrs4	NP_695227.2	ILMN_1361326	0006660358	S	719	GCCGCAGAGTTGGCCCCAAAGAACATTCGAGTGAACTGCTTGGCACCTGG	15	+	33618737-33618786	15p13	Rattus norvegicus dehydrogenase/reductase (SDR family) member 4 (Dhrs4), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IMP]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]	The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A [goid 42574] [evidence IEA]; The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A [goid 42574] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal [goid 1758] [evidence IEA]; Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal [goid 1758] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57114321-S	ILMN_264279	TPIL4	NM_001008881.1	NM_001008881.1		408232	57114321	NM_001008881.1	Tpil4	NP_001008881.1	ILMN_1369179	0002100433	S	155	TCCCTCCAGGAGTCAGGAATCAACTCTGTGAAAGTGGGCATCTTGGATGC	3	+	155730673-155730718:155731843-155731846	3q42	Rattus norvegicus trypsin protease inhibitor-like 4 (Tpil4), mRNA.			Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758681-S	ILMN_272032	NUP107	NM_053830.1	NM_053830.1		116555	16758681	NM_053830.1	Nup107	NP_446282.1	ILMN_1351339	0003990497	S	2837	GACCCGCTCGGCTATGAAATCCAGTCATGATTCACCATTCTCTGCGCCCG	7	-	57059958-57059981:57059982-57060007	7q22	Rattus norvegicus nucleoporin 107 (Nup107), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]	The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The directed movement of mRNA from the nucleus to the cytoplasm [goid 6406] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Enables the directed movement of substances between the nucleus and the cytoplasm of a cell [goid 5487] [evidence ISS]; Enables the directed movement of substances between the nucleus and the cytoplasm of a cell [goid 5487] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654143-S	ILMN_65431	XRN1_PREDICTED	XM_217233.4	XM_217233.4		300944	109483824	XM_217233.4	Xrn1_predicted	XP_217233.4	ILMN_1356809	0002340022	S	5222	AAGGCCATGTTGTGTCCCACCAGAGGTCAGCTCCAAGCTCCTCAAGAAGG	8	+	101124274-101124323	8q31	PREDICTED: Rattus norvegicus 5'-3' exoribonuclease 1 (predicted) (Xrn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641621-S	ILMN_262613	RGD1560911_PREDICTED	XM_001062704.1	XM_001062704.1		309112	109463194	XM_001062704.1	RGD1560911_predicted	XP_001062704.1	ILMN_1351563	0004730390	S	1335	CCAGAGGACTATTCTTAGGAGGGGATTGGTCTTGGGTGGCGGTTGCTTGC				1q41	PREDICTED: Rattus norvegicus similar to BC026645 protein (predicted) (RGD1560911_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660524-S	ILMN_55873	LOC498376	XM_573611.1	XM_573611.1		498376	62660524	XM_573611.1	LOC498376	XP_573611.1	ILMN_1364395	0006020341	S	563	CACTCCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGAATAGAGAGGC					PREDICTED: Rattus norvegicus similar to ORF4 (LOC498376), mRNA.					
Rattus norvegicus	RefSeq	GI_62648242-S	ILMN_276997	RGD1559532_PREDICTED	XM_001070396.1	XM_001070396.1		297671	109474358	XM_001070396.1	RGD1559532_predicted	XP_001070396.1	ILMN_1350400	0004480068	S	1224	CAGGAAACCAGCAAAGCCCACCACAAGGTCCCCAATTGGACAGACCACAG				4q42	PREDICTED: Rattus norvegicus RGD1559532 (predicted) (RGD1559532_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643059-S	ILMN_52183	RNASEN	XM_226843.4	XM_226843.4		310159	109464508	XM_226843.4	Rnasen	XP_226843.4	ILMN_1355497	0001230100	S	2998	AAGGAAATGAGGTGGGAAAGAGAGCATCAGGAGAGAGAGCCGGATGAGGC	2	+	62447382-62447431	2q16	PREDICTED: Rattus norvegicus ribonuclease III, nuclear (Rnasen), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules [goid 6396] [evidence IEA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt [goid 4525] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62641383-S	ILMN_285818	ATE1_PREDICTED	XM_001079547.1	XM_001079547.1		293526	109462981	XM_001079547.1	Ate1_predicted	XP_001079547.1	ILMN_1359229	0002350253	S	1512	AGATCCAAGCGAGGAGGCTGTTGTGCTGGAGTATGCGAACCTCGTAGGGC				1q37	PREDICTED: Rattus norvegicus arginine-tRNA-protein transferase 1 (predicted) (Ate1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19173769-S	ILMN_278437	AGPAT4	NM_133406.1	NM_133406.1		170919	19173769	NM_133406.1	Agpat4	NP_596897.1	ILMN_1372733	0005340458	S	1415	TCAGTGATGGAGACTGGAGGGCCTTGCTGGGGCAAACAGAAACCACAGCC	1	-	42987197-42987246	1q11	Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) (Agpat4), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IEA]	Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate [goid 3841] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: phospholipid + 1,2-diacylglycerol = lysophospholipid + triacylglycerol [goid 46027] [evidence ISS]	MGC93227	MGC93227
Rattus norvegicus	RefSeq	GI_36054039-S	ILMN_271195	NPTXR	NM_030841.2	NM_030841.2		81005	36054039	NM_030841.2	Nptxr	NP_110468.2	ILMN_1350450	0001450736	S	4303	TACACATGACCGGGGACCACAGACTAAGGTGTGAGGATCTGGGAGGTGGG	7	-	118024155-118024204	7q34	Rattus norvegicus neuronal pentraxin receptor (Nptxr), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Combining with a pentraxin to initiate a change in cell activity [goid 8029] [evidence IDA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]	Npr	Npr
Rattus norvegicus	RefSeq	GI_62662915-S	ILMN_54662	LOC290836	XM_224967.3	XM_224967.3		290836	62662915	XM_224967.3	LOC290836	XP_224967.3	ILMN_1361274	0006520091	S	531	GACACCAAACAGGCAGACCTAGGACATGACACCAAACCTGCAGACCTAGG					PREDICTED: Rattus norvegicus similar to coagulation factor V (LOC290836), mRNA.					
Rattus norvegicus	RefSeq	GI_62658319-S	ILMN_64831	PCP2	XM_221787.3	XM_221787.3		304195	109494996	XM_221787.3	Pcp2	XP_221787.3	ILMN_1362570	0006650072	S	254	CCTATTGGTCCCAAGGATGGAATGCAGAAACGACCCGGGACACTCAGCCC	12	+	2530477-2530491:2531522-2531556	12p12	PREDICTED: Rattus norvegicus Purkinje cell protein 2 (L7) (Pcp2), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence ISS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865717-A	ILMN_293572	HERC4	NM_001012074.1	NM_001012074.1		309758	58865717	NM_001012074.1	Herc4	NP_001012074.1	ILMN_1376365	0000540739	S	3453	CCAGTCAACAGGAGGTGGTGAGAGCTATCTCCCGGTTTCCCATACCTGTT	20	+	25665230-25665279	20p11	Rattus norvegicus hect domain and RLD 4 (Herc4), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate [goid 16881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57527524-S	ILMN_296836	RRP15	NM_001009702.1	NM_001009702.1		360895	57527524	NM_001009702.1	Rrp15	NP_001009702.1	ILMN_1371035	0002360546	S	1083	GGACCCTTTCTGTGGACACATGCGGATCGCACACCAGCGTTAAAGTGCAG	13	-	102833843-102833892	13q26	Rattus norvegicus ribosomal RNA processing 15 homolog (S. cerevisiae) (Rrp15), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rrp15; MGC105708	Rrp15; MGC105708
Rattus norvegicus	RefSeq	GI_62639238-S	ILMN_287733	RPS16	XM_001078234.1	XM_001078234.1		140655	109461573	XM_001078234.1	Rps16	XP_001078234.1	ILMN_1371004	0001410056	S	701	GCAAGAGATACCTTTAATAAGTGGCTGTGGGGACTGGAGTGATGGCTGCC				1q21	PREDICTED: Rattus norvegicus ribosomal protein S16 (Rps16), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence TAS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62652542-S	ILMN_51356	LOC360425	XM_346805.2	XM_346805.2		360425	62652542	XM_346805.2	LOC360425	XP_346806.1	ILMN_1367922	0004210341	S	1666	CATGGCCAAAACGCTTGAAAATGTGGCTTCCTCTCTGAGGGCCTGGTACG					PREDICTED: Rattus norvegicus hypothetical LOC360425 (LOC360425), mRNA.					
Rattus norvegicus	RefSeq	GI_46485189-S	ILMN_287012	UBE4A	NM_207610.1	NM_207610.1		315608	46485189	NM_207610.1	Ube4a	NP_997493.1	ILMN_1348961	0003450164	S	5742	ATTGGGCAAAGCCCACTGGGTACCATGACAAGCCAGACTGATGCCACATC	8	-	47879478-47879527	8q22	Rattus norvegicus ubiquitination factor E4A, UFD2 homolog (S. cerevisiae) (Ube4a), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Addition of multiple ubiquitin moieties to a protein, forming a ubiquitin chain [goid 209] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: Catalysis of the reaction: ATP + ubiquitin + protein N-ubiquityl(n)lysine = AMP + diphosphate + protein N-ubiquityl(n+1)lysine, i.e. the ligation of ubiquitin moieties, via isopeptide bonds, to extend the length of the multiubiquitin chain attached to a substrate protein [goid 34450] [evidence ISS]	Ab2-232	Ab2-232
Rattus norvegicus	RefSeq	GI_62646270-S	ILMN_269230	CHD6_PREDICTED	XM_001068943.1	XM_001068943.1		311607	109471239	XM_001068943.1	Chd6_predicted	XP_001068943.1	ILMN_1369694	0005890647	S	9808	GCTGTTCACTGTTGAACTAACATTCTGCTCAGTTCTGCCTCCAGTGGAAG				3q42	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 6 (predicted) (Chd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.43055	ILMN_269230	CHD6_PREDICTED	XM_001068943.1	XM_001068943.1		311607	109471239	XM_001068943.1	Chd6_predicted	XP_001068943.1	ILMN_1530431	0000770025	S	9990	TGCCCTAAATCCTTAAAATACAAATGCTATATAAAAACTCCTGTATCTTG				3q42	PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 6 (predicted) (Chd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576154-S	ILMN_281527	OLR1373	NM_214830.1	NM_214830.1		287090	47576154	NM_214830.1	Olr1373	NP_999995.1	ILMN_1352786	0000520114	S	227	CCACCACTGTCCCCAAGGTACTGGCCATTCACATATTCAGAAATCAAGCC	10	+	12479449-12479498	10q12	Rattus norvegicus olfactory receptor 1373 (Olr1373), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1373	Olr1373
Rattus norvegicus	RefSeq	GI_62656827-S	ILMN_47842	TBX2_PREDICTED	XM_220810.4	XM_220810.4		303398	109488727	XM_220810.4	Tbx2_predicted	XP_220810.4	ILMN_1350101	0004590605	S	2624	CCTACCAGATCCCGGTCACCATCCCACCTAGCACTAGCCTCCTTACCACT	10	+	74092604-74092653	10q26	PREDICTED: Rattus norvegicus T-box 2 (predicted) (Tbx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656000-S	ILMN_66143	LOC497892	XM_573076.2	XM_573076.2		497892	109487991	XM_573076.2	LOC497892	XP_573076.2	ILMN_1353466	0003060739	S	1050	GTCGGCAGCATAAAGGCCCTTTTTGGCTTGAGACACTGGCTGCCAGCTAT	10	-	32085091-32085140	10q21	PREDICTED: Rattus norvegicus similar to Delta-sarcoglycan (SG-delta) (35 kDa dystrophin-associated glycoprotein) (35DAG) (LOC497892), mRNA.					
Rattus norvegicus	RefSeq	GI_11559967-S	ILMN_298656	LIF	NM_022196.1	NM_022196.1		60584	11559967	NM_022196.1	Lif	NP_071532.1	ILMN_1364748	0002470438	S	340	GCCTCCCTGACCAACATCACCTGGGATCAGAAAAACCTCAACCCCACTGC	14	+	84890361-84890410	14q21	Rattus norvegicus leukemia inhibitory factor (Lif), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process by which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate [goid 19827] [evidence ISS]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence ISS]; The process of introducing a phosphate group to a tyrosine residue of a Stat3 protein [goid 42503] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of meiosis [goid 45835] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence ISS]; The process by which the anatomical structures of muscle are generated and organized. Morphogenesis pertains to the creation of form [goid 48644] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; A reproductive process occurring in the mother that allows an embryo or fetus to develop within it [goid 60135] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine [goid 33138] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the leukemia inhibitory factor receptor [goid 5146] [evidence IEA]; Interacting selectively with the leukemia inhibitory factor receptor [goid 5146] [evidence IMP]; Interacting selectively with the leukemia inhibitory factor receptor [goid 5146] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the leukemia inhibitory factor receptor [goid 5146] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652361-S	ILMN_65427	LOC500861	XM_576259.1	XM_576259.1		500861	62652361	XM_576259.1	LOC500861	XP_576259.1	ILMN_1372452	0006940494	S	339	TGGCACCTACCATGTGACGGGCTACCCAGAGCCAGAGACAAGAAGAACTC					PREDICTED: Rattus norvegicus similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3-like (LOC500861), mRNA.					
Rattus norvegicus	RefSeq	GI_62647687-S	ILMN_267822	ATP6V1B1_PREDICTED	XM_001073086.1	XM_001073086.1		312488	109473791	XM_001073086.1	Atp6v1b1_predicted	XP_001073086.1	ILMN_1356440	0002970162	S	1693	TTTTCTTTAGGGGCTTGCTGAGAATGGAAGCGGGGGAGGGCATCATCCAG				4q34	PREDICTED: Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit B1 (predicted) (Atp6v1b1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8392961-S	ILMN_277837	BAAT	NM_017300.1	NM_017300.1		29725	8392961	NM_017300.1	Baat	NP_058996.1	ILMN_1355867	0005700239	S	1344	CCCTTTGTAATCCCAAGCATCAACTGGGGAGGAGAGGTTATCCCACACGC	5	-	66246114-66246163	5q22	Rattus norvegicus bile acid-Coenzyme A: amino acid N-acyltransferase (Baat), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; The material contained within the membrane of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase [goid 5782] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IC ]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence IEA]; Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule [goid 16410] [evidence ISS]; Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule [goid 16410] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A [goid 16790] [evidence IEA]; Catalysis of the reaction: choloyl-CoA + glycine = CoA + glycocholate [goid 47963] [evidence IEA]	MGC108728; kan-1	MGC108728; kan-1
Rattus norvegicus	RefSeq	GI_34861499-S	ILMN_279884	RGD1308049_PREDICTED	XR_008764.1	XR_008764.1		293690	109463408	XR_008764.1	RGD1308049_predicted		ILMN_1364310	0004590403	S	1170	CGCCCAGAGGACAAACCCTGCCTTTGGACTTCATAGTACACCTTCTGGCC				1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004C24 (predicted) (RGD1308049_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652697-S	ILMN_268956	LOC686810	XR_009040.1	XR_009040.1		686810	109482532	XR_009040.1	LOC686810		ILMN_1369978	0003450619	S	748	CAAGCCATCCAGAAGAACATGAATGCCATTCAGCTGGCCAAAGCCAACCC					PREDICTED: Rattus norvegicus similar to apolipoprotein L, 3 (predicted) (LOC686810), mRNA.					
Rattus norvegicus	RefSeq	GI_62078826-S	ILMN_273112	CTDSPL2	NM_001014048.1	NM_001014048.1		311368	62078826	NM_001014048.1	Ctdspl2	NP_001014070.1	ILMN_1371704	0006760465	S	1443	GTCCGGCCTCACATCAGAGACAGATTTCGATTGCATGATTTGCTGCCCCC	3	+	108796336-108796341:108796342-108796385	3q35	Rattus norvegicus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 (Ctdspl2), mRNA.			Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657930-A	ILMN_273913	HGD	NM_001012145.1	NM_001012145.1		360719	58865859	NM_001012145.1	Hgd	NP_001012145.1	ILMN_1376689	0005700577	S	1447	CACTTCCAGGAGCCCAACAGAGCCTAAGTGAGACCGGAGCCCTCTACAGT	11	-	64876444-64876463:64876464-64876493	11q21	Rattus norvegicus homogentisate 1, 2-dioxygenase (Hgd), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid [goid 6559] [evidence IEA]; The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid [goid 6570] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: homogentisate + O2 = 4-maleylacetoacetate [goid 4411] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27465548-S	ILMN_301145	WFDC2	NM_173109.1	NM_173109.1		286888	27465548	NM_173109.1	Wfdc2	NP_775132.1	ILMN_1373157	0005570056	S	363	GCCACCCGTTGTGACCAAAGAAGGAGGTAACGGAGAAAAGCAGGGCACCT	3	+	155583801-155583835:155585409-155585423	3q42	Rattus norvegicus WAP four-disulfide core domain 2 (Wfdc2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	re4	re4
Rattus norvegicus	RefSeq	GI_62662736-S	ILMN_56152	LOC502087	XM_577524.1	XM_577524.1		502087	62662736	XM_577524.1	LOC502087	XP_577524.1	ILMN_1374795	0005700035	S	226	AGACCCATCTTCGTCTCCTGATGGCAACCGTGGCTTATGCTGTGGTGCTC					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (LOC502087), mRNA.					
Rattus norvegicus	RefSeq	GI_6981081-S	ILMN_274330	IGFBP2	NM_013122.1	NM_013122.1		25662	6981081	NM_013122.1	Igfbp2	NP_037254.1	ILMN_1360048	0004070519	S	1370	ATAGAGAGGGTGGTGGCACTGGGGATACTGGGTACAGGCTTGGGAATGGG				9q33	Rattus norvegicus insulin-like growth factor binding protein 2 (Igfbp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IMP]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IDA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEP]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]	Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]; Interacting selectively with insulin-like growth factor I [goid 31994] [evidence IMP]; Interacting selectively with insulin-like growth factor II [goid 31995] [evidence IMP]; Interacting selectively with insulin-like growth factor II [goid 31995] [evidence IDA]	IGFBP-2; ILGFBPA	IGFBP-2; ILGFBPA
Rattus norvegicus	RefSeq	GI_62648216-S	ILMN_58116	LOC500334	XM_575685.1	XM_575685.1		500334	62648216	XM_575685.1	LOC500334	XP_575685.1	ILMN_1370788	0001240278	S	1425	CTCCTAGAGAGGTGGACGGGGAGATAAAGGCCCAGCCTCATTAAAGATAC					PREDICTED: Rattus norvegicus similar to protein phosphatase 2, regulatory subunit B (B56), alpha isoform (LOC500334), mRNA.					
Rattus norvegicus	RefSeq	GI_62667558-S	ILMN_269659	RGD1560964_PREDICTED	XM_001055598.1	XM_001055598.1		293862	109462320	XM_001055598.1	RGD1560964_predicted	XP_001055598.1	ILMN_1360054	0006550750	S	1471	CAGGTGACCATGGCAGAGCACTCTGGGAGTATGGTAGTTGCTATTCCCTG				Xq37	PREDICTED: Rattus norvegicus similar to XAP-5 protein (predicted) (RGD1560964_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654524-S	ILMN_61444	RGD1563398_PREDICTED	XM_238565.4	XM_238565.4		301075	109484125	XM_238565.4	RGD1563398_predicted	XP_238565.4	ILMN_1354094	0006590411	S	2222	GCAAGGACGATTATCAAGCTGCAGTGGAAAGACTGATCATGGCTGCTCGG	8	+	127502252-127502301	8q32	PREDICTED: Rattus norvegicus RGD1563398 (predicted) (RGD1563398_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665349-S	ILMN_67446	LOC307907	XM_226529.3	XM_226529.3		307907	62665349	XM_226529.3	LOC307907	XP_226529.3	ILMN_1357555	0004230156	S	5296	GCAGTCTGTTCTTTCTCGGGGTTCCACATCCATTTCTTGCCAGCAGCTCC				19q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6430548M08 (predicted) (LOC307907), mRNA.					
Rattus norvegicus	RefSeq	GI_62639011-S	ILMN_55164	LOC502295	XM_577758.1	XM_577758.1		502295	62639011	XM_577758.1	LOC502295	XP_577758.1	ILMN_1356047	0002060156	S	27	GATCCGGGGAGTGGGAGGAGCCAAAGATACAGGAACATACTCCTATCAGT				1q12	PREDICTED: Rattus norvegicus similar to OBOX3 (LOC502295), mRNA.					
Rattus norvegicus	RefSeq	GI_62641790-S	ILMN_58651	LOC293693	XM_219530.3	XM_219530.3		293693	62641790	XM_219530.3	LOC293693	XP_219530.3	ILMN_1369811	0000610373	S	4843	GCTGCGGCCTGCCCAAGACAACCTTGGCTATACCAGAGCAGGAATTAAGG				1q43	PREDICTED: Rattus norvegicus hypothetical LOC293693 (predicted) (LOC293693), mRNA.					
Rattus norvegicus	RefSeq	GI_62644215-S	ILMN_275493	LOC365909	XM_001078576.1	XM_001078576.1		365909	109465475	XM_001078576.1	LOC365909	XP_001078576.1	ILMN_1352552	0000540725	S	660	GGACCAGGCAGGCTCCATACCAGTAAGAGAAACCCTAAAGAATGGGCTCT	2	-	208422835-208422884	2q41	PREDICTED: Rattus norvegicus similar to Heme oxygenase 3 (HO-3) (LOC365909), mRNA.					
Rattus norvegicus	RefSeq	GI_62656406	ILMN_64735	LOC287211	XM_220323.3	XM_220323.3		287211	62656406	XM_220323.3	LOC287211	XP_220323.3	ILMN_1650773	0000430600	S	953	TGCCCTTTGGGTTGGAATGGCTCGTCACCAAGGTCTACCACTCTCTGCCC				10q21	PREDICTED: Rattus norvegicus similar to activated in Blocked Unfolded protein response ABU-2, Prion-like Q/N-rich domain protein PQN-30, Prion-like Q/N-rich domain protein (abu-2) (LOC287211), mRNA.					
Rattus norvegicus	RefSeq	GI_62655197-S	ILMN_48966	AAMP_PREDICTED	XM_217441.4	XM_217441.4		301512	109486139	XM_217441.4	Aamp_predicted	XP_217441.4	ILMN_1349007	0007050440	S	2383	AGCAGAGGTGTGGGTGCAGAGGGAAGAGGAGGGGAGAACATTGGACTGCT	9	-	73606654-73606703	9q33	PREDICTED: Rattus norvegicus angio-associated migratory protein (predicted) (Aamp_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650256-S	ILMN_264594	RGD1563988_PREDICTED	XM_001062730.1	XM_001062730.1		500606	109478934	XM_001062730.1	RGD1563988_predicted	XP_001062730.1	ILMN_1361650	0000510288	S	531	GTTAATGCTCAGATGTGGCCATGCAACTCCCCTCGGGCAGAGCGACCGAA				6q11	PREDICTED: Rattus norvegicus similar to protein containing single MORN motif in testis (predicted) (RGD1563988_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667250-S	ILMN_52245	LOC501620	XM_577020.1	XM_577020.1		501620	62667250	XM_577020.1	LOC501620	XP_577020.1	ILMN_1368958	0000450739	S	999	CTGGGGTCCTGAGATCGAGCCCCTGGGCGTGCTCAAGAGGCAGTACACCA				Xq34	PREDICTED: Rattus norvegicus similar to polyamine oxidase isoform 2 (LOC501620), mRNA.					
Rattus norvegicus	RefSeq	GI_56961615-S	ILMN_287244	CXADR	NM_053570.1	NM_053570.1		89843	56961615	NM_053570.1	Cxadr	NP_446022.1	ILMN_1352802	0005340673	S	1339	CAGGAACTCCCACTACACCCAGTTTACAGCAGCTACAGGAGCACTTCTGC	11	+	17241272-17241321	11q11	Rattus norvegicus coxsackie virus and adenovirus receptor (Cxadr), mRNA.	A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of cardiac muscle fiber over time, from its formation to the mature structure [goid 48739] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components [goid 7005] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of cardiac muscle fiber over time, from its formation to the mature structure [goid 48739] [evidence IEA]	Combining with a virus component to initiate a change in cell activity [goid 1618] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC109536; Car1	MGC109536; Car1
Rattus norvegicus	RefSeq	GI_62661996-A	ILMN_279426	COG3	NM_001012157.1	NM_001012157.1		361073	58865885	NM_001012157.1	Cog3	NP_001012157.1	ILMN_1376934	0003990040	S	2274	AGTACACCCTCTCACAGCAGCCTTGGGCACAACCAGCGAAGGTCAACGAC	15	-	56601698-56601712:56606666-56606700	15q11	Rattus norvegicus component of oligomeric golgi complex 3 (Cog3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p) [goid 17119] [evidence IEA]; A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p) [goid 17119] [evidence ISS]	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence ISS]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence IEA]; The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG [goid 6890] [evidence ISS]; The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network) [goid 6891] [evidence IEA]; The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network) [goid 6891] [evidence ISS]; A process by which a protein is transported to, or maintained in, a location within an organelle [goid 33365] [evidence IEA]; A process by which a protein is transported to, or maintained in, a location within an organelle [goid 33365] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence IEA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]	Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665801	ILMN_66734	RGD1566085_PREDICTED	XM_342112.3	XM_342112.3		361819	109509278	XM_342112.3	RGD1566085_predicted	XP_342113.2	ILMN_1650998	0002480605	S	1190	GCCTCATGTTGACTCATGGGTATGTGGAAGGTAGGTGGAGGAGGGGAGCC	20	-	10499517-10499566	20p12	PREDICTED: Rattus norvegicus similar to pyridoxal (pyridoxine, vitamin B6) kinase (predicted) (RGD1566085_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643290-S	ILMN_63628	LOC499586	XM_574911.1	XM_574911.1		499586	62643290	XM_574911.1	LOC499586	XP_574911.1	ILMN_1361549	0001500082	S	1586	CCCGTAGCAGGAGACAGATGAGCTGGCATGTAATGGCGCATGTCTTGAGC				2q24	PREDICTED: Rattus norvegicus LOC499586 (LOC499586), mRNA.					
Rattus norvegicus	RefSeq	GI_62662636-S	ILMN_49723	NEIL3_PREDICTED	XM_224835.4	XM_224835.4		290729	109503347	XM_224835.4	Neil3_predicted	XP_224835.4	ILMN_1359981	0006900519	S	1599	GATCCTTGTTCTCTACATGCCAGCAGGCCTCAGTGCAAGACGCACAGCCG	16	+	41293949-41293998	16p11	PREDICTED: Rattus norvegicus nei like 3 (E. coli) (predicted) (Neil3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653597-S	ILMN_294245	LOC683941	XM_001068135.1	XM_001068135.1		683941	109484623	XM_001068135.1	LOC683941	XP_001068135.1	ILMN_1368579	0005690273	S	2270	ATGACAAGTGGCAGGTTGTAGGCATCGTGAGCTGGGGCTATGGCTGTGGG					PREDICTED: Rattus norvegicus similar to transmembrane protease, serine 4 (LOC683941), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642449-I	ILMN_64873	OBFC1_PREDICTED	XM_574683.1	XM_574683.1		294025	62642449	XM_574683.1	Obfc1_predicted	XP_574683.1	ILMN_1376025	0006620411	S	55	GGCGGGAGTGTGCTAGCTTCCTTCTCGCAACCGGAACTATTTCGGCAATC				1q54	PREDICTED: Rattus norvegicus oligonucleotide/oligosaccharide-binding fold containing 1 (predicted) (Obfc1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644399-S	ILMN_272468	RGD1311822_PREDICTED	XM_001077343.1	XM_001077343.1		310855	109467654	XM_001077343.1	RGD1311822_predicted	XP_001077343.1	ILMN_1367890	0000360168	S	1733	TGCCACCCCAGCGGAGACTCATAGGGAAGCAGTGTATGTGCCTGGTGGAT				2q43	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13273 (predicted) (RGD1311822_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506808-S	ILMN_292143	IL8RA	NM_019310.1	NM_019310.1		54258	9506808	NM_019310.1	Il8ra	NP_062183.1	ILMN_1356749	0000450687	S	982	CTGGTTCACAAGGAGGTTTTGACACACCACTCTGCTTCCTTTCGCACGTC	9	-	73510506-73510555	9q33	Rattus norvegicus interleukin 8 receptor, alpha (Il8ra), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with interleukin-8 to initiate a change in cell activity [goid 4918] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865563-A	ILMN_281661	GGA1	NM_001011994.1	NM_001011994.1		300066	58865563	NM_001011994.1	Gga1	NP_001011994.1	ILMN_1376859	0004200309	S	2389	GGGGTGACGCCCATGACCTAGCTGTTTGCACTTGGTGTGTGGTTTGGCTC	7	+	116859677-116859726	7q34	Rattus norvegicus golgi associated, gamma adaptin ear containing, ARF binding protein 1 (Gga1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC109601	MGC109601
Rattus norvegicus	RefSeq	GI_62643260-S	ILMN_62128	RGD1563726_PREDICTED	XM_226993.4	XM_226993.4		294932	109464668	XM_226993.4	RGD1563726_predicted	XP_226993.3	ILMN_1366087	0001410576	S	1537	GCCGGCTGCAGAGAGTGAAGGAGCAGGCCCAGGTGATCAATCAAGCAATG	2	+	112783417-112783466	2q24	PREDICTED: Rattus norvegicus similar to Nyd-sp12 protein (predicted) (RGD1563726_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6981001-S	ILMN_286372	GYS2	NM_013089.1	NM_013089.1		25623	6981001	NM_013089.1	Gys2	NP_037221.1	ILMN_1363999	0006420563	S	2031	GGATGAGGATGAGAGATATGATGAGGAAGAGGAGGCTGAGAGGGACCGGC	4	-	179984093-179984142	4q44	Rattus norvegicus glycogen synthase 2 (Gys2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IDA]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence ISS]	Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1) [goid 4373] [evidence IEA]; Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1) [goid 4373] [evidence IDA]; Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1) [goid 4373] [evidence ISS]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]	GLYSN	GLYSN
Rattus norvegicus	RefSeq	GI_58865941-A	ILMN_270921	GPIAP1	XM_001052977.1	XM_001052977.1		362173	109468325	XM_001052977.1	Gpiap1	XP_001052977.1	ILMN_1376498	0003610102	S	848	GTGTGAGGAGGAAGAGGCAGCTTCAGCACCTATAGTGGAAGACCAGGTAG	3	-	89070005-89070054	3q32	PREDICTED: Rattus norvegicus GPI-anchored membrane protein 1 (Gpiap1), mRNA.					
Rattus norvegicus	RefSeq	GI_13027435-S	ILMN_296795	APAF1	NM_023979.1	NM_023979.1		78963	13027435	NM_023979.1	Apaf1	NP_076469.1	ILMN_1375211	0002650008	S	5796	CCCGGCTGCACTCCTGGCCCTTAGGTGGATTTCAGATTAGATATTCCCAG				7q13	Rattus norvegicus apoptotic peptidase activating factor 1 (Apaf1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence ISS]; The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline [goid 1843] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis, mediated by cytochrome c [goid 8635] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 16505] [evidence ISS];  [goid 16505] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662081-S	ILMN_60373	LOC294052	XM_220002.3	XM_220002.3		294052	62662081	XM_220002.3	LOC294052	XP_220002.3	ILMN_1353624	0001240204	S	230	GAACAAGTGCATGCTGTTTATGGGAGAACTGGCGGAACTGGGAATCATGA				15q25	PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (LOC294052), mRNA.					
Rattus norvegicus	RefSeq	GI_54262180-S	ILMN_296631	TMEM176B	NM_134390.2	NM_134390.2		171411	54262180	NM_134390.2	Tmem176b	NP_599217.1	ILMN_1355909	0003610056	S	889	ATTCGGCACCGGCCTCCCCGACCAAAGAGAAGATCCCTGTTACCCCATGA	4	-	76912147-76912149:76912150-76912196	4q24	Rattus norvegicus transmembrane protein 176B (Tmem176b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]	The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]		MGC72697; Torid	MGC72697; Torid
Rattus norvegicus	RefSeq	GI_62655858-S	ILMN_295028	RGD1565784_PREDICTED	XM_001059479.1	XM_001059479.1		497874	109490367	XM_001059479.1	RGD1565784_predicted	XP_001059479.1	ILMN_1354616	0003940309	S	491	GCGCATGTCTTCGTTGCTTAAAGGACTTGGATGGCGCTCTTGTCGCTGAC				10q12	PREDICTED: Rattus norvegicus RGD1565784 (predicted) (RGD1565784_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34861626-S	ILMN_294658	MS4A4A_PREDICTED	XM_001075321.1	XM_001075321.1		361734	109463584	XM_001075321.1	Ms4a4a_predicted	XP_001075321.1	ILMN_1358694	0005900463	S	596	GGAATATCCCTCTCTGCCTATGGATGCAGGGTGATGTGTTGTAACCCTGG				1q43	PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 4 (predicted) (Ms4a4a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62717912-S	ILMN_55086	LOC501255	XM_576674.1	XM_576674.1		501255	62717912	XM_576674.1	LOC501255	XP_576674.1	ILMN_1358585	0005720021	S	1132	TGAGGGACTCAGAGCAATCAAGAGCTGCTTGTCATCCAGAAACACTGTGC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501255), mRNA.					
Rattus norvegicus	RefSeq	GI_19424223-S	ILMN_284972	PLA2G4A	NM_133551.1	NM_133551.1		24653	19424223	NM_133551.1	Pla2g4a	NP_598235.1	ILMN_1360060	0004570056	S	2328	GAAGACAGAACCCATCTCGTTGCTCTGTTTCCCTCAGTAATGTTGAGGCA	13	-	64136172-64136221	13q21	Rattus norvegicus phospholipase A2, group IVA (cytosolic, calcium-dependent) (Pla2g4a), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme [goid 42588] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct [goid 1542] [evidence IMP]; Regression of ovarian corpora lutea [goid 1554] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 19369] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of vesicle fusion [goid 31340] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin [goid 31394] [evidence IMP]; Any process that activates or increases the frequency, rate, or extent of fever [goid 31622] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence IMP]; The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta [goid 46697] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus [goid 51597] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 9395] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the reaction: diphosphate + H2O = 2 phosphate [goid 4427] [evidence IEA]; Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate [goid 4622] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence TAS]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate; requires Ca2+ [goid 47498] [evidence IDA]	Pla2c; Pla2g4; cPLA2	Pla2c; Pla2g4; cPLA2
Rattus norvegicus	RefSeq	GI_62659478-S	ILMN_49953	GLT25D2_PREDICTED	XM_222718.4	XM_222718.4		289081	109498015	XM_222718.4	Glt25d2_predicted	XP_222718.4	ILMN_1369050	0001170064	S	2011	TGGAAGTCCCGGAAGCAAGGACCCATCCACAGCAACGCCAAGAACACGGA	13	+	67459410-67459459	13q21	PREDICTED: Rattus norvegicus glycosyltransferase 25 domain containing 2 (predicted) (Glt25d2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55741775-S	ILMN_291566	SGCG	NM_001006993.1	NM_001006993.1		305941	55741775	NM_001006993.1	Sgcg	NP_001006994.1	ILMN_1369105	0000070167	S	1247	CCTCCCAAACGAACGGTTGGCTGGAGGACTCTAACATGCCCCAACTGTGC	15	-	40363809-40363858	15p12	Rattus norvegicus sarcoglycan, gamma (dystrophin-associated glycoprotein) (Sgcg), mRNA.	A protein complex formed of four sarcoglycans plus sarcospan; there are six known sarcoglycans: alpha-, beta-, gamma-, delta-, epsilon- and zeta-sarcoglycan; all are N-glycosylated single-pass transmembrane proteins. The sarcoglycan-sarcospan complex is a subcomplex of the dystrophin glycoprotein complex, and is fixed to the dystrophin axis by a lateral association with the dystroglycan complex [goid 16012] [evidence IEA]; A protein complex formed of four sarcoglycans plus sarcospan; there are six known sarcoglycans: alpha-, beta-, gamma-, delta-, epsilon- and zeta-sarcoglycan; all are N-glycosylated single-pass transmembrane proteins. The sarcoglycan-sarcospan complex is a subcomplex of the dystrophin glycoprotein complex, and is fixed to the dystrophin axis by a lateral association with the dystroglycan complex [goid 16012] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94674	MGC94674
Rattus norvegicus	RefSeq	GI_8394032-S	ILMN_263806	PPP3CB	NM_017042.1	NM_017042.1		24675	8394032	NM_017042.1	Ppp3cb	NP_058738.1	ILMN_1351926	0005700131	S	1755	TGAGGGCCTTGGGACTTGTGCTGTCCATAAGATTGGGGAATCGCTGCCAC	15	+	4029966-4030015	15p16	Rattus norvegicus protein phosphatase 3, catalytic subunit, beta isoform (Ppp3cb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin [goid 5955] [evidence ISS]	Any process that stops, prevents, or reduces the rate of T cell mediated cytotoxicity [goid 1915] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEP]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IDA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence IEA]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence IEP]	Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence ISS]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate, dependent on the presence of calcium ions [goid 4723] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]	Calna2	Calna2
Rattus norvegicus	RefSeq	GI_62660384-S	ILMN_67967	LOC360925	XM_346926.2	XM_346926.2		360925	62660384	XM_346926.2	LOC360925	XP_346927.2	ILMN_1374820	0000840411	S	910	TGTCAGAGCCCGTGTGTCTTTTGGGGGGAACACTGTGGGAGAAGAAATGC					PREDICTED: Rattus norvegicus hypothetical LOC360925 (LOC360925), mRNA.					
Rattus norvegicus	RefSeq	GI_21426788-S	ILMN_282096	ZFP180	NM_144757.1	NM_144757.1		246279	21426788	NM_144757.1	Zfp180	NP_653358.1	ILMN_1370049	0000450315	S	3050	CACTGCCTTAGAGTGACAGGTGGCCATTGAGTTGTCGGGGCCCTAGTCTG	1	+	79325417-79325466	1q21	Rattus norvegicus zinc finger protein 180 (Zfp180), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	rKr1	rKr1
Rattus norvegicus	RefSeq	GI_47087108-S	ILMN_286514	SKIV2L	NM_213559.1	NM_213559.1		294260	47087108	NM_213559.1	Skiv2l	NP_998724.1	ILMN_1373830	0005290056	S	3674	TTTGGTAGGAGAGCCTGTGTTAGGGGCCAAGATGGAGACGGCAGCCACCT				20p12	Rattus norvegicus superkiller viralicidic activity 2-like (S. cerevisiae ) (Skiv2l), mRNA.			Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643415-S	ILMN_69491	LOC499609	XM_574935.1	XM_574935.1		499609	62643415	XM_574935.1	LOC499609	XP_574935.1	ILMN_1358468	0001770372	S	2677	CCGGTCATTGTATTTTAATGTTCTCTTCTACCTCCCACTAACCATAGCGG				2q26	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC499609), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928729-S	ILMN_271799	SCARB1	NM_031541.1	NM_031541.1		25073	13928729	NM_031541.1	Scarb1	NP_113729.1	ILMN_1359178	0004480129	S	2271	CCTCAGGGTCCTTATTTTTCAGGCGTGGGGTCAAAGAGAGAGGTGTGGGC	12	+	32457456-32457505	12q14	Rattus norvegicus scavenger receptor class B, member 1 (Scarb1), mRNA.	Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence IMP]	The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence ISS]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence IEA]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 6702] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IMP]; The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell [goid 6910] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence IEA]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence ISS]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence IEA]; Any process that modulates the frequency, rate or extent of phagocytosis, the process whereby phagocytes engulf external particulate material [goid 50764] [evidence TAS]; Any process that modulates the frequency, rate or extent of phagocytosis, the process whereby phagocytes engulf external particulate material [goid 50764] [evidence IDA]	Interacting selectively with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine [goid 1786] [evidence IDA]; Interacting selectively with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine [goid 1786] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence TAS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with high-density lipoprotein: one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 8035] [evidence ISS]	Srb1; Cd36l1; SR-B1	Srb1; Cd36l1; SR-B1
Rattus norvegicus	RefSeq	GI_62656554-S	ILMN_55561	SCARF1_PREDICTED	XM_220712.4	XM_220712.4		303313	109488533	XM_220712.4	Scarf1_predicted	XP_220712.4	ILMN_1356327	0002900079	S	2529	GGGGATACAGGATGCAGTGAGAGCAGGGTGCTGAAGCTGATGTGGACCAG	10	+	62847505-62847554	10q24	PREDICTED: Rattus norvegicus scavenger receptor class F, member 1 (predicted), transcript variant 2 (Scarf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666472-S	ILMN_266851	TES_PREDICTED	XM_001061498.1	XM_001061498.1		316142	109512481	XM_001061498.1	Tes_predicted	XP_001061498.1	ILMN_1369642	0000670093	S	862	CCCATCTTGTTTTATCTGCAGCACCTGTGGGGAACTCCTGGTGCACATGA				Xq12	PREDICTED: Rattus norvegicus testis derived transcript (predicted) (Tes_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641628	ILMN_264397	RGD1561983_PREDICTED	XM_001063609.1	XM_001063609.1		309114	109463215	XM_001063609.1	RGD1561983_predicted	XP_001063609.1	ILMN_1649828	0001740176	S	11229	GAAGTGTGTACAGAATGCCTGCCTCACACCAGAGGGCCAGGTGGTACAGC				1q41	PREDICTED: Rattus norvegicus similar to Muc5b protein (predicted) (RGD1561983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38505167-S	ILMN_267177	CLIP1	NM_031745.2	NM_031745.2		65201	38505167	NM_031745.2	Clip1	NP_113933.2	ILMN_1356649	0002260039	S	4395	CGAGGTGCTACAGTAACTTTTTGTTCCCGGAGAAACACCCTGGGACAAGC	12	+	34155341-34155390	12q16	Rattus norvegicus CAP-GLY domain containing linker protein 1 (Clip1), mRNA.	Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IEA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IDA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence ISS]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence TAS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IEA]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IDA]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]	restin; CLIP-170	restin; CLIP-170
Rattus norvegicus	RefSeq	GI_47575866-S	ILMN_265106	SH3KBP1	NM_053360.2	NM_053360.2		84357	47575866	NM_053360.2	Sh3kbp1	NP_445812.1	ILMN_1354037	0001340450	S	3026	GAGGCCACTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAG	X	-	56075748-56075797	Xq21	Rattus norvegicus SH3-domain kinase binding protein 1 (Sh3kbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a cytoplasmic vesicle [goid 30659] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence TAS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15147912] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Seta	Seta
Rattus norvegicus	RefSeq	GI_62651655-S	ILMN_52716	MMP19_PREDICTED	XM_222317.4	XM_222317.4		304608	109480142	XM_222317.4	Mmp19_predicted	XP_222317.3	ILMN_1360234	0001050368	S	1571	CCTGCAACCGTGGAATCAGTCTTGGATGTTCCCTCTGCCACAGACGCTGC	7	+	2098782-2098831	7q11	PREDICTED: Rattus norvegicus matrix metalloproteinase 19 (predicted) (Mmp19_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576454-S	ILMN_298444	OLR1595	NM_001000500.1	NM_001000500.1		304990	47576454	NM_001000500.1	Olr1595	NP_001000500.1	ILMN_1363837	0003060131	S	775	CTTCGATTCTCTGCCACCTATACACCATTCTGGGACAACACCATTGCTCT	13	+	89929773-89929822	13q24	Rattus norvegicus olfactory receptor 1595 (Olr1595), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr13-90117883-90118830_ORF; Olr1595	ratchr13-90117883-90118830_ORF; Olr1595
Rattus norvegicus	RefSeq	GI_62661846-S	ILMN_64304	LOC501981	XM_577410.1	XM_577410.1		501981	62661846	XM_577410.1	LOC501981	XP_577410.1	ILMN_1365253	0003940010	S	231	TCCTCCCAGACCACAGACTCAGGGGTGAGTGGCCAGCAGGAGAGACGTGA					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 6 (LOC501981), mRNA.					
Rattus norvegicus	RefSeq	GI_62663003-S	ILMN_64923	LOC498669	XM_573952.1	XM_573952.1		498669	62663003	XM_573952.1	LOC498669	XP_573952.1	ILMN_1359908	0003870239	S	1214	GACTGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCCCAGGGTAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498669), mRNA.					
Rattus norvegicus	RefSeq	GI_62656566-S	ILMN_56317	RGD1309077_PREDICTED	XM_340845.3	XM_340845.3		360569	109488557	XM_340845.3	RGD1309077_predicted	XP_340846.1	ILMN_1363937	0000780315	S	361	TCGGGAAAAGCAAGGGAAGATCCTACTGGAAGGTCGCAGGCTGATTGCAG	10	+	63600717-63600766	10q24	PREDICTED: Rattus norvegicus similar to putative RNA methyltransferase (predicted) (RGD1309077_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_7242202-S	ILMN_277101	RLN1	NM_013413.1	NM_013413.1		25616	7242202	NM_013413.1	Rln1	NP_038199.1	ILMN_1352239	0004540091	S	346	AGCACTGTCTGAGGGGCGAGCACCGTTCCCAGAGCTACAACAACACGCAC	1	-	233000940-233000989	1q52	Rattus norvegicus relaxin 1 (Rln1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the levels of body fluids [goid 50878] [evidence TAS]	Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	RELAX	RELAX
Rattus norvegicus	RefSeq	GI_51036634-S	ILMN_302175	FBP1	NM_012558.2	NM_012558.2		24362	51036634	NM_012558.2	Fbp1	NP_036690.2	ILMN_1358646	0003130139	S	1146	GATCCACCAGAAGGCACCAGTTATCATGGGGTCCACCGAAGACGTGCAGG	17	+	7817895-7817944	17p14	Rattus norvegicus fructose-1,6- biphosphatase 1 (Fbp1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IDA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence TAS]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IEA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IDA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence ISS]; Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3 [goid 42578] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]	Fdp	Fdp
Rattus norvegicus	RefSeq	GI_62642904-S	ILMN_67135	LOC499524	XM_574849.1	XM_574849.1		499524	62642904	XM_574849.1	LOC499524	XP_574849.1	ILMN_1369765	0000430193	S	867	GGGAGGAACAAGTACCCAGGGGAAGGAGTCTGAGCATGTGGCTTACACAG					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC499524), mRNA.					
Rattus norvegicus	RefSeq	GI_62655530-S	ILMN_53584	LOC501202	XM_576629.1	XM_576629.1		501202	62655530	XM_576629.1	LOC501202	XP_576629.1	ILMN_1349735	0001400154	S	532	GGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGACTGCAAACGGGTAC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC501202), mRNA.					
Rattus norvegicus	RefSeq	GI_62639354-S	ILMN_294948	SNX26_PREDICTED	XM_001079120.1	XM_001079120.1		361540	109461663	XM_001079120.1	Snx26_predicted	XP_001079120.1	ILMN_1365686	0003780131	S	1936	CCGGAAGACTCTGTGTTGCGAGTGCTAAGGGCTCAGAGGGCAGAACTAAG					PREDICTED: Rattus norvegicus sorting nexin 26 (predicted) (Snx26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644089-S	ILMN_58657	TRIM45_PREDICTED	XM_215666.4	XM_215666.4		295323	109465340	XM_215666.4	Trim45_predicted	XP_215666.3	ILMN_1361387	0000540435	S	2043	GAGGAGTCTGCTTAGGACCGTGGCACTCTGATGGCTTCCTGGGGACAAGT	2	+	195980313-195980343:195980344-195980362	2q34	PREDICTED: Rattus norvegicus tripartite motif protein 45 (predicted) (Trim45_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978816-S	ILMN_302801	ESR2	NM_012754.1	NM_012754.1		25149	6978816	NM_012754.1	Esr2	NP_036886.1	ILMN_1354998	0002120300	S	1986	TGCACTTCCCAGGAGTCAGGGTGGTTGTGTGGCGGTGTTCCTCATACCAG	6	-	98691683-98691732	6q24	Rattus norvegicus estrogen receptor 2 (ER beta) (Esr2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 15024130] [evidence IDA]	An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence IDA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IMP]; Any series of molecular signals generated as a consequence of an estrogen binding to its receptor [goid 30520] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus [goid 33574] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes [goid 43193] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss [goid 43526] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level [goid 45885] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of behavior, the specific actions or reactions of an organism in response to external or internal stimuli [goid 48521] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IDA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Combining with estrogen to initiate a change in cell activity [goid 30284] [evidence TAS]; Combining with estrogen to initiate a change in cell activity [goid 30284] [evidence IDA]; Combining with estrogen to initiate a change in cell activity [goid 30284] [evidence IMP]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence TAS]; Interacting selectively with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42562] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	ERbeta; ER-beta; Erb2	ERbeta; ER-beta; Erb2
Rattus norvegicus	RefSeq	GI_62651233-S	ILMN_53571	LOC299315	XM_238474.3	XM_238474.3		299315	62651233	XM_238474.3	LOC299315	XP_238474.3	ILMN_1369349	0006350270	S	552	TGCACAGAACCGTCCTCTCACTTCCACACGAGTGATTTTGGCCCCCGCGT					PREDICTED: Rattus norvegicus hypothetical LOC299315 (LOC299315), mRNA.					
Rattus norvegicus	RefSeq	GI_62667571-S	ILMN_69637	LOC317605	XM_229183.3	XM_229183.3		317605	62667571	XM_229183.3	LOC317605	XP_229183.3	ILMN_1353958	0001450008	S	5632	AGGAAAATCAGTGTGCCAAGAATCAAGCAAGGGAGCAACAGCCAAACACC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC317605), mRNA.					
Rattus norvegicus	RefSeq	GI_62657080-S	ILMN_64467	RDM1_PREDICTED	XM_220931.4	XM_220931.4		287726	109489047	XM_220931.4	Rdm1_predicted	XP_220931.4	ILMN_1363012	0006770138	S	808	CTGGAGGAGGAAGACCTGAAGCTGTGTGGACTGCACTAGCCGCTCTGACT	10	+	90669082-90669120:90669121-90669131	10q32.1	PREDICTED: Rattus norvegicus RAD52 motif 1 (predicted) (Rdm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649083-S	ILMN_56300	LOC502950	XM_578455.1	XM_578455.1		502950	62649083	XM_578455.1	LOC502950	XP_578455.1	ILMN_1369887	0005420458	S	535	TGGAGTTGAAGCCAGCAAAGACATGGACAGAGGCTCGGCACCAGACCCAG					PREDICTED: Rattus norvegicus similar to Keratin, type I cytoskeletal 18 (Cytokeratin 18) (K18) (CK 18) (LOC502950), mRNA.					
Rattus norvegicus	RefSeq	GI_62649260-S	ILMN_65935	LOC500505	XM_575867.1	XM_575867.1		500505	62649260	XM_575867.1	LOC500505	XP_575867.1	ILMN_1366650	0000430575	S	1671	GGCCTGGCAGCAAATCCAAGCAAAGCCTCTTCAACTTTTTCACCAGCACC				5q33	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC34837 (LOC500505), mRNA.					
Rattus norvegicus	RefSeq	GI_62640744-S	ILMN_52266	ABHD2_PREDICTED	XM_214979.4	XM_214979.4		293050	109458939	XM_214979.4	Abhd2_predicted	XP_214979.2	ILMN_1354232	0004230097	S	2463	CCCTAGTAAGTGGGGGATTGGACCAGGTAGATTGCTGCGATGACCACCAG	1	+	135112231-135112280	1q31	PREDICTED: Rattus norvegicus abhydrolase domain containing 2 (predicted) (Abhd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638690-S	ILMN_62036	LOC502248	XM_577707.1	XM_577707.1		502248	62638690	XM_577707.1	LOC502248	XP_577707.1	ILMN_1350045	0003710082	S	1440	CATGCCCTTCTTTTCAGGACACTTCCGACAACACCCACAGTGAACAAAGC					PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502248), mRNA.					
Rattus norvegicus	RefSeq	GI_58865761-A	ILMN_302383	TIA1	NM_001012096.1	NM_001012096.1		312510	58865761	NM_001012096.1	Tia1	NP_001012096.1	ILMN_1376552	0003360600	S	1257	TGCTGCCTAATCAGCCTGCTGGGTATCGAGTGGCAGGGTATGAAACCCAG	4	+	120617386-120617435	4q34	Rattus norvegicus TIA1 cytotoxic granule-associated RNA binding protein (Tia1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cytokines [goid 42036] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_38454197-S	ILMN_299997	KPNA1	NM_198726.1	NM_198726.1		288064	38454197	NM_198726.1	Kpna1	NP_942021.1	ILMN_1349854	0006370411	S	4725	TCCCCACACCAGACAGAGCTGTTGGACCCTGGGTGTTTCTTCAGCCTTAC	11	-	66552797-66552846	11q22	Rattus norvegicus karyopherin (importin) alpha 1 (Kpna1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656296-S	ILMN_58767	RGD1563441_PREDICTED	XM_573122.2	XM_573122.2		497935	109488362	XM_573122.2	RGD1563441_predicted	XP_573122.1	ILMN_1357805	0006900750	S	719	GGCAGTGTGAATTGTGAGCGGCGAAGGCTCCTAGACTGTGCCAGCATTAC	10	+	56134242-56134291	10q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A030009H04 (predicted) (RGD1563441_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660247-S	ILMN_56235	LOC501902	XM_577326.1	XM_577326.1		501902	62660247	XM_577326.1	LOC501902	XP_577326.1	ILMN_1352047	0001190746	S	2233	TGCAGCACACAGCCAACTGGAGCAGGATCAACGTGGAACAATACCCTGCC				14p22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (LOC501902), mRNA.					
Rattus norvegicus	RefSeq	GI_47576106-S	ILMN_262510	OLR1398	NM_001000002.1	NM_001000002.1		287245	47576106	NM_001000002.1	Olr1398	NP_001000002.1	ILMN_1362917	0004230039	S	257	CTGGAATTGACAAGACCATGAGCTATGCTGGGTGCATGGCCCAGTTGTTC	10	+	34941030-34941079	10q22	Rattus norvegicus olfactory receptor 1398 (Olr1398), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr07	tpcr07
Rattus norvegicus	RefSeq	GI_62652297-S	ILMN_262830	LOC685024	XM_001061977.1	XM_001061977.1		685024	109480685	XM_001061977.1	LOC685024	XP_001061977.1	ILMN_1360384	0007100162	S	1185	GACCAGCTTGCTATTGACGCGGGTCAGAAACATTTTGGGACGACTATGTG	7	-	68108247-68108296	7q22	PREDICTED: Rattus norvegicus similar to N-acetyltransferase ESCO2 (Establishment of cohesion 1 homolog 2) (ECO1 homolog 2) (LOC685024), mRNA.		The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62652264	ILMN_270363	MBD6_PREDICTED	XM_001055890.1	XM_001055890.1		362892	109482069	XM_001055890.1	Mbd6_predicted	XP_001055890.1	ILMN_1650329	0006510603	S	3785	CGTTGTGATGATGCCACTGAGGATTATGCAGCGTGGTCCAACCGGAGCGG				7q22	PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 6 (predicted) (Mbd6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61556809-S	ILMN_269690	ADPRHL1	NM_001013054.1	NM_001013054.1		290880	61556809	NM_001013054.1	Adprhl1	NP_001013072.1	ILMN_1361752	0004540427	S	1358	GGAGAACCCTCTTCAATCTTTCCAAGCCCTAGCTGTGTCTACCTGCGACC	16	+	81155598-81155647	16q12.5	Rattus norvegicus ADP-ribosylhydrolase like 1 (Adprhl1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]; The process of removing one or more ADP-ribose residues from a protein [goid 51725] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: N2-(ADP-D-ribosyl)-L-arginine + H2O = L-arginine + ADP-ribose [goid 3875] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393449-S	ILMN_299988	GLG1	NM_017211.1	NM_017211.1		29476	8393449	NM_017211.1	Glg1	NP_058907.1	ILMN_1368524	0006020292	S	5298	CATGCGCGTCTTCCTGAGGTGTTCGCTGCAGGCTGTGTCAGTTGCTCCAA				19q12	Rattus norvegicus golgi apparatus protein 1 (Glg1), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence NAS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]	Selel; MG-160	Selel; MG-160
Rattus norvegicus	RefSeq	GI_20302104-S	ILMN_270179	ADAM6	NM_138906.1	NM_138906.1		192271	20302104	NM_138906.1	Adam6	NP_620261.1	ILMN_1355036	0006450278	S	2398	CGTGGGGACGCAAGAGGTTTTGGATTTGGATACCACCTGACATTGGTGGG	6	+	138592665-138592714	6q32	Rattus norvegicus a disintegrin and metallopeptidase domain 6 (Adam6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	TMDCIV	TMDCIV
Rattus norvegicus	RefSeq	GI_62662798-S	ILMN_280954	UNC5D_PREDICTED	XM_001069726.1	XM_001069726.1		306534	109504346	XM_001069726.1	Unc5d_predicted	XP_001069726.1	ILMN_1360360	0002680050	S	3357	CGGGGATCTTGACTCGCTCGCCTGTGCCCTTGAAGAGATTGGGAGGACAC				16q12.3	PREDICTED: Rattus norvegicus unc-5 homolog D (C. elegans) (predicted) (Unc5d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662899-S	ILMN_280954	UNC5D_PREDICTED	XM_001069726.1	XM_001069726.1		306534	109504346	XM_001069726.1	Unc5d_predicted	XP_001069726.1	ILMN_1365128	0002970576	S	572	AGGGCGTGGAAGAGGAGCGAATCCTGAGAGGAGCTTGGAGCATGGGGACA				16q12.3	PREDICTED: Rattus norvegicus unc-5 homolog D (C. elegans) (predicted) (Unc5d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62078446-A	ILMN_295868	LOC287167	NM_001013853.1	NM_001013853.1		287167	62078446	NM_001013853.1	LOC287167	NP_001013875.1	ILMN_1376663	0006520332	S	77	GCGCAGAGACCATAGGGAGGTTGTTCATTGTCTTCCCCTCCTCCAAGACC	10	-	15559302-15559333:15559449-15559466	10q12	Rattus norvegicus globin, alpha (LOC287167), mRNA.	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	GloA	GloA
Rattus norvegicus	RefSeq	GI_34855475-S	ILMN_282439	SDCCAG1	XM_001077607.1	XM_001077607.1		299114	109461512	XM_001077607.1	Sdccag1	XP_001077607.1	ILMN_1364519	0004810072	S	2502	CACAGTGAAGCTGACCAGAACACAAGCAAAAATGTGGCAGCTGGACAGCC				1q21	PREDICTED: Rattus norvegicus serologically defined colon cancer antigen 1 (Sdccag1), mRNA.					
Rattus norvegicus	RefSeq	GI_62642065-I	ILMN_49420	RFX3_PREDICTED	XM_574648.1	XM_574648.1		361746	62642065	XM_574648.1	Rfx3_predicted	XP_574648.1	ILMN_1376084	0000060242	S	1625	GACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCT				1q52	PREDICTED: Rattus norvegicus regulatory factor X, 3 (influences HLA class II expression) (predicted) (Rfx3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665159-S	ILMN_271625	ZDHHC1	NM_001039099.1	NM_001039099.1		291967	84993242	NM_001039099.1	Zdhhc1	NP_001034188.1	ILMN_1371341	0003060279	S	1658	CACGTTTGCCTGCTGTTTTTGTGAGCCCAAGCAGTGGCGAGCCCGGAACA	19	-	35288870-35288919	19q11	Rattus norvegicus zinc finger, DHHC domain containing 1 (Zdhhc1), mRNA.		The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence ISS]; The covalent or non-covalent attachment of a palmitoyl moiety to a protein [goid 18345] [evidence IEA]	Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence ISS]; Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule [goid 16409] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643521-S	ILMN_271069	RGD1306797_PREDICTED	XR_008146.1	XR_008146.1		310465	109466735	XR_008146.1	RGD1306797_predicted		ILMN_1362340	0006450451	S	2642	GAGTACTCGCTGTTGACAGGAGCATCCAAATGACCTCAACCTCTGTGAGT				2q31	PREDICTED: Rattus norvegicus similar to putative pheromone receptor V2R2 (predicted) (RGD1306797_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662243-S	ILMN_270610	ANXA8	NM_001031654.1	NM_001031654.1		306283	72255532	NM_001031654.1	Anxa8	NP_001026824.1	ILMN_1360946	0000780309	S	1417	TCAGGCAGCCAGTGAGCAAGTGGGAGAGCACGGCTATGAGAGAACACAGC	16	+	9730167-9730216	16p16	Rattus norvegicus annexin A8 (Anxa8), mRNA.		The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]	MGC116246	MGC116246
Rattus norvegicus	RefSeq	GI_62643353-S	ILMN_66676	RGD1309985_PREDICTED	XM_342231.3	XM_342231.3		361931	109464757	XM_342231.3	RGD1309985_predicted	XP_342232.3	ILMN_1363574	0003840092	S	2816	AAGGTTCATGGGCGCCTTCCTGTGCATGGAACGACGGATGGTCCTGAGTG	2	+	123413371-123413394:123415446-123415471	2q25	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932438A13 (predicted) (RGD1309985_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649995-S	ILMN_263954	VPS13D_PREDICTED	XM_001073610.1	XM_001073610.1		313825	109477679	XM_001073610.1	Vps13d_predicted	XP_001073610.1	ILMN_1366783	0001190338	S	13380	TGGGGCCCAGACTCTGCTCCTGTTAGAAGGGAAGTCAGAAGAGGTCTTGG				5q36	PREDICTED: Rattus norvegicus vacuolar protein sorting 13D (yeast) (predicted) (Vps13d_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.2644	ILMN_263954	VPS13D_PREDICTED	XM_001073610.1	XM_001073610.1		313825	109477679	XM_001073610.1	Vps13d_predicted	XP_001073610.1	ILMN_1530437	0003140731	S	13490	CATATTAGTTTGTGGGACAGGGAGTTTCTTTAGATTATGGGGAAATAATT				5q36	PREDICTED: Rattus norvegicus vacuolar protein sorting 13D (yeast) (predicted) (Vps13d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34852634-S	ILMN_275160	IL20RA_PREDICTED	XM_001073043.1	XM_001073043.1		308716	109460501	XM_001073043.1	Il20ra_predicted	XP_001073043.1	ILMN_1361857	0003710102	S	1311	AGCAAACTTAGACCCACAGCTCGAAGACCTACAACACCTGGGGCAGGAGC				1p12	PREDICTED: Rattus norvegicus interleukin 20 receptor, alpha (predicted) (Il20ra_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660906	ILMN_298018	RGD1563894_PREDICTED	XR_007402.1	XR_007402.1		364196	109501004	XR_007402.1	RGD1563894_predicted		ILMN_1650566	0002260731	S	1010	CAGTGCCCGTGATTACGAAGTGTCTCCTCCCAAGTACCATCTGAAAGCTG				14q21	PREDICTED: Rattus norvegicus similar to mortality factor 4 like 1 (predicted) (RGD1563894_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641612-S	ILMN_297059	TMEM80	NM_001017455.1	NM_001017455.1		309109	62945265	NM_001017455.1	Tmem80	NP_001017455.1	ILMN_1369698	0001980619	S	1503	CCATGTTCAGGGCTGGAGGTAGGGCTGGGGAAGTTCCAAGGAGCAGAAGA	1	+	201533301-201533350	1q41	Rattus norvegicus transmembrane protein 80 (Tmem80), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			RGD1308399	RGD1308399
Rattus norvegicus	RefSeq	GI_62645982-S	ILMN_62483	LOC311496	XM_230651.3	XM_230651.3		311496	62645982	XM_230651.3	LOC311496	XP_230651.3	ILMN_1354373	0005910091	S	4699	TAACCTCCAAGCAGGAGGAAGACCAGCCTACCATGGAGCAGATAGCCCGC				3q41	PREDICTED: Rattus norvegicus hypothetical LOC311496 (predicted) (LOC311496), mRNA.					
Rattus norvegicus	RefSeq	GI_62654364-S	ILMN_53402	NBEAL2_PREDICTED	XM_236649.4	XM_236649.4		316014	109483997	XM_236649.4	Nbeal2_predicted	XP_236649.4	ILMN_1359476	0006400458	S	8264	GTGTCTGTGACCAAGGAACGCAGTCATGTGCTGGTGGGTCTGGAAGATGG	8	-	115006053-115006102	8q32	PREDICTED: Rattus norvegicus neurobeachin-like 2 (predicted) (Nbeal2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661628-S	ILMN_52820	RGD1565212_PREDICTED	XM_573805.2	XM_573805.2		498534	109501809	XM_573805.2	RGD1565212_predicted	XP_573805.1	ILMN_1372244	0000060092	S	941	GGAGGCTGGTGACTACCACTCAAGGACATGCAAGAAAAGCAGTATGGAGC	15	-	43236429-43236478	15p12	PREDICTED: Rattus norvegicus similar to 4930578I06Rik protein (predicted) (RGD1565212_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577676-S	ILMN_297961	OLR641	NM_001000643.1	NM_001000643.1		404839	47577676	NM_001000643.1	Olr641	NP_001000643.1	ILMN_1368129	0002900739	S	656	TCCTGTGTTCTCTCAAGACTCACAACTCTGAAGGGCGACGCAAAGCACTC	3	-	72538746-72538795	3q24	Rattus norvegicus olfactory receptor 641 (Olr641), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr641	Olr641
Rattus norvegicus	RefSeq	GI_62078616-S	ILMN_288550	RGD1309051	NM_001013944.1	NM_001013944.1		299153	62078616	NM_001013944.1	RGD1309051	NP_001013966.1	ILMN_1353992	0000130563	S	971	ATCGCTGAGAAAAAGTACGTGGCAGGCATCAAACTCCAACCCCGAGTGGA	6	+	99027506-99027510:99028160-99028204	6q24	Rattus norvegicus similar to chromosome 14 open reading frame 50 (RGD1309051), mRNA.					
Rattus norvegicus	RefSeq	GI_62641512	ILMN_291311	NKX1-2_PREDICTED	XM_001054614.1	XM_001054614.1		293568	109463047	XM_001054614.1	Nkx1-2_predicted	XP_001054614.1	ILMN_1650269	0004210300	S	769	TTTCAGAACCGCAGGACCAAGTGGAAGAAGCAGAACCCAGGGGCTGACGG				1q41	PREDICTED: Rattus norvegicus NK1 transcription factor related, locus 2 (Drosophila) (predicted) (Nkx1-2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718127-S	ILMN_66954	LOC501295	XM_576708.1	XM_576708.1		501295	62718127	XM_576708.1	LOC501295	XP_576708.1	ILMN_1355044	0003190670	S	839	CGCCAGAAACTATGAAAGTCAGAAGATGCTGGACAGATGTCATACACACC					PREDICTED: Rattus norvegicus similar to LRRGT00082 (LOC501295), mRNA.					
Rattus norvegicus	RefSeq	GI_18959247-S	ILMN_276914	OLR1	NM_133306.1	NM_133306.1		140914	18959247	NM_133306.1	Olr1	NP_579840.1	ILMN_1374695	0001190441	S	3229	GAGGAGGCTTCCCACAGATGTCAACCAGCCTTAGCGTATCAAGTTGCAGT	4	-	166747700-166747749	4q42	Rattus norvegicus oxidized low density lipoprotein (lectin-like) receptor 1 (Olr1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IMP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence IMP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IMP]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence TAS]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Oldr1; LOX-1; Olr1	Oldr1; LOX-1; Olr1
Rattus norvegicus	RefSeq	GI_62655564-S	ILMN_281788	MGC114381	XM_001075652.1	XM_001075652.1		501205	109522674	XM_001075652.1	MGC114381	XP_001075652.1	ILMN_1369049	0007000605	S	24	GGCCGCCGTTTGGGTGAGGAAAAAATGTTGGAGCAAGAAGAAAATGGCTT					PREDICTED: Rattus norvegicus timeless-interacting protein (MGC114381), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A signal transduction based surveillance mechanism that prevents the initiation of mitosis until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome [goid 76] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The slowing of DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progession [goid 31573] [evidence ISS]; A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle [goid 33261] [evidence ISS]; Any process that prevents the collapse of stalled replication forks [goid 48478] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758707-S	ILMN_283710	MAP3K8	NM_053847.1	NM_053847.1		116596	16758707	NM_053847.1	Map3k8	NP_446299.1	ILMN_1359072	0006860075	S	2264	CTCAGAGCCATTAAGCAGCAGGCCACTAGTGAGAGTTTCTGTTATGTTCC	17	+	61930002-61930051	17q12.1	Rattus norvegicus mitogen-activated protein kinase kinase kinase 8 (Map3k8), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	Tpl2; D17TPL2; Tpl-2	Tpl2; D17TPL2; Tpl-2
Rattus norvegicus	RefSeq	GI_62658373-I	ILMN_69094	HSP105_PREDICTED	XM_573343.1	XM_573343.1		288444	62658373	XM_573343.1	Hsp105_predicted	XP_573343.1	ILMN_1375803	0006180603	S	98	GACGTGCGCTCAGCCTACAGACTTCCTTGTGTGGGCTTCTAAAAGGATTC				12p11	PREDICTED: Rattus norvegicus heat shock protein 105 (predicted) (Hsp105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648212-S	ILMN_57937	LOC500333	XM_580059.1	XM_580059.1		500333	62648212	XM_580059.1	LOC500333	XP_580059.1	ILMN_1369609	0001450215	S	188	GGAGATGGAGAACACACTGGCAGGGAACATGGGAGAGAGCAAAACTCCCC					PREDICTED: Rattus norvegicus LOC500333 (LOC500333), mRNA.					
Rattus norvegicus	RefSeq	GI_62644193-S	ILMN_63903	TAF13_PREDICTED	XM_227586.3	XM_227586.3		310784	109465384	XM_227586.3	Taf13_predicted	XP_227586.1	ILMN_1370802	0003140044	S	1009	CGTAGGAATGGCACAGCTTGTGAAGCAGAGGCCAGGACAGGTATTCTGGG	2	+	204147551-204147600	2q34	PREDICTED: Rattus norvegicus TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55742826-S	ILMN_278673	ARHGDIA	NM_001007005.1	NM_001007005.1		360678	55742826	NM_001007005.1	Arhgdia	NP_001007006.1	ILMN_1364052	0004760735	S	1646	TCCCTGGACCCAACCAGGACAAACGTGGGACCAAGTTCACGCAGTTGGGA	10	-	109967898-109967947	10q32.3	Rattus norvegicus Rho GDP dissociation inhibitor (GDI) alpha (Arhgdia), mRNA.	An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence ISS]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IEA]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]	Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding [goid 5094] [evidence ISS]; Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding [goid 5094] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	MGC94886	MGC94886
Rattus norvegicus	RefSeq	GI_62663082-S	ILMN_56337	LOC498679	XM_579848.1	XM_579848.1		498679	62663082	XM_579848.1	LOC498679	XP_579848.1	ILMN_1367884	0005360309	S	798	CAGCACCTGCAGAGACAACAGCATGCTATCAAGGCTTCCTGTCTCCTAGG					PREDICTED: Rattus norvegicus LOC498679 (LOC498679), mRNA.					
Rattus norvegicus	RefSeq	GI_19424347-S	ILMN_291727	SLC6A13	NM_133623.1	NM_133623.1		171163	19424347	NM_133623.1	Slc6a13	NP_598307.1	ILMN_1351129	0006860010	S	1840	AAGACCTTCCCCAGAAGAGCCAACCAGAGCTGACTTCTCCAGCGACACCG	4	+	157771757-157771806	4q42	Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, GABA), member 13 (Slc6a13), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IDA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA]	GAT-2	GAT-2
Rattus norvegicus	RefSeq	GI_62639378	ILMN_52265	GPR41_PREDICTED	XM_344880.2	XM_344880.2		365228	62639378	XM_344880.2	Gpr41_predicted	XP_344881.2	ILMN_1650672	0006110050	S	1620	TGCCAAGGTGGTAGCAAGGTGGAAAGGCACCCGCATGGGTCTGAAGGTCA				1q21	PREDICTED: Rattus norvegicus G protein-coupled receptor 41 (predicted) (Gpr41_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758011-S	ILMN_289272	NR0B1	NM_053317.1	NM_053317.1		58850	16758011	NM_053317.1	Nr0b1	NP_445769.1	ILMN_1349472	0001500309	S	1399	GCTGGAGATGCTCTGTGCAAAGCTGTGAAGGCATGCAGCCACTCAAGTGC	X	+	73010041-73010068:73010069-73010090	Xq22	Rattus norvegicus nuclear receptor subfamily 0, group B, member 1 (Nr0b1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A ribosome bound to mRNA that forms part of a polysome [goid 42788] [evidence ISS]; A ribosome bound to mRNA that forms part of a polysome [goid 42788] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; Any process that establishes and transmits the specification of sexual status of an individual organism [goid 7530] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The specification of male sex of an individual organism [goid 30238] [evidence ISS]; The specification of male sex of an individual organism [goid 30238] [evidence IEA]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells [goid 30325] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33144] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33144] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis [goid 33327] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis [goid 33327] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 50810] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Sertoli cell. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules [goid 60008] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a Sertoli cell. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules [goid 60008] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IMP]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence ISS];  [goid 3706] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence ISS]; The function of a transcription cofactor that represses transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3714] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP];  [goid 17163] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with DNA containing a hairpin. A hairpin structure forms when a DNA strand folds back on itself and intrachain base pairing occurs between inverted repeat sequences [goid 32448] [evidence ISS]; Interacting selectively with a steroid hormone receptor [goid 35258] [evidence IEA]; Interacting selectively with a steroid hormone receptor [goid 35258] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation [goid 50682] [evidence IEA]	DAX-1; Ahch	DAX-1; Ahch
Rattus norvegicus	RefSeq	GI_62665818-S	ILMN_67534	UBE2G2_PREDICTED	XM_215371.4	XM_215371.4		294331	109509315	XM_215371.4	Ube2g2_predicted	XP_215371.3	ILMN_1366286	0003190373	S	1548	CCCAGGGGAGTCGGTCTGTTTGAAAGGCAAGAGTCTGGTGTTGGTAGGTG	20	-	11367834-11367883	20p12	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2G 2 (predicted) (Ube2g2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649533-S	ILMN_292325	TIE1	XM_001069541.1	XM_001069541.1		89806	109477040	XM_001069541.1	Tie1	XP_001069541.1	ILMN_1357525	0007040270	S	3505	GAACCTGGCTCTGCTGGCCGGAGCAAACTGCTTCCACCTGTGACTCTGAA				5q36	PREDICTED: Rattus norvegicus tyrosine kinase with immunoglobulin-like and EGF-like domains 1 (Tie1), mRNA.		The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; The joining of two or more lipid bilayer membranes that surround a cell [goid 45026] [evidence ISS]; The joining of two or more lipid bilayer membranes that surround a cell [goid 45026] [evidence IEA]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27716050-S	ILMN_292325	TIE1	XM_001069541.1	XM_001069541.1		89806	109477040	XM_001069541.1	Tie1	XP_001069541.1	ILMN_2040854	0007330041	S	3302	AACTGTGATGATGAAGTGTACGAGCTGATGCGGCAGTGCTGGCGGGACCG				5q36	PREDICTED: Rattus norvegicus tyrosine kinase with immunoglobulin-like and EGF-like domains 1 (Tie1), mRNA.		The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes [goid 1570] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus [goid 32526] [evidence ISS]; The joining of two or more lipid bilayer membranes that surround a cell [goid 45026] [evidence ISS]; The joining of two or more lipid bilayer membranes that surround a cell [goid 45026] [evidence IEA]	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642545-S	ILMN_69575	LOC499381	XM_574699.1	XM_574699.1		499381	62642545	XM_574699.1	LOC499381	XP_574699.1	ILMN_1373848	0004210253	S	685	CACACCAGACGTTTCGCCAGAGACTATGAAAGCCAGAAGGTCCTGGACAG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499381), mRNA.					
Rattus norvegicus	RefSeq	GI_13928755-S	ILMN_283162	CPT1A	NM_031559.1	NM_031559.1		25757	13928755	NM_031559.1	Cpt1a	NP_113747.1	ILMN_1351089	0005360086	S	4004	CGGCCTGACTCTCGCTGCTGTGACCACTCACCAACCTGTGTTACTCAGAG	1	+	205912594-205912643	1q42	Rattus norvegicus carnitine palmitoyltransferase 1a, liver (Cpt1a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]	The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence TAS]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IMP]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 9437] [evidence TAS]; Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation [goid 31998] [evidence TAS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence IMP]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence IMP]	Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IMP]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IEA]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence TAS]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IDA]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IMP]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	CPT-Ia	CPT-Ia
Rattus norvegicus	RefSeq	GI_16758941-S	ILMN_268276	CIITA	NM_053529.1	NM_053529.1		85483	16758941	NM_053529.1	Ciita	NP_445981.1	ILMN_1373305	0000380487	S	3965	CCTACTGGAGGCTCTGAAGATGCCAAGGGCGATGCTGTTCTGCGACCTCT	10	-	5087440-5087489	10q11	Rattus norvegicus class II transactivator (Ciita), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IC ]	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence IEP]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]	Mhc2ta; CIITA	Mhc2ta; CIITA
Rattus norvegicus	RefSeq	GI_62643523-S	ILMN_51713	LOC295092	XM_227212.3	XM_227212.3		295092	62643523	XM_227212.3	LOC295092	XP_227212.3	ILMN_1361878	0001400452	S	4344	TGGTGAGCCACAAAGGCTGCAAGGAAACACAGCAGTGCCAGAAGGACATC				2q31	PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC295092), mRNA.					
Rattus norvegicus	RefSeq	GI_34870111-S	ILMN_262709	LOC688606	XM_001067593.1	XM_001067593.1		688606	109494933	XM_001067593.1	LOC688606	XP_001067593.1	ILMN_1369313	0006650156	S	174	TGCCCTAACCTATGGCCTTTACTGCTTCCACCGCGGCCAGAGCCACCGAT	12	+	1366469-1366518	12p12	PREDICTED: Rattus norvegicus similar to HIG1 domain family, member 2A (LOC688606), mRNA.					
Rattus norvegicus	RefSeq	GI_13242246-S	ILMN_300171	NOTCH2	NM_024358.1	NM_024358.1		29492	13242246	NM_024358.1	Notch2	NP_077334.1	ILMN_1360685	0004280576	S	8196	CTTCTTGGAGAGTACGATGAATGCCTGTTGTCGCCCGGACATCCTTGCAG				2q34	Rattus norvegicus Notch homolog 2 (Drosophila) (Notch2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence TAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]	Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence IDA]; The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form. An epithelial sheet is a flat surface consisting of closely packed epithelial cells [goid 2011] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction [goid 46579] [evidence ISS]; Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 50793] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664196-S	ILMN_69811	CDC23	XM_214588.4	XM_214588.4		291689	109506431	XM_214588.4	Cdc23	XP_214588.4	ILMN_1373731	0001580082	S	1513	GCCATTGAGGTCAACAAGAGAGACTACAGAGCTTGGTATGGCCTTGGGCA	18	-	27112399-27112448	18p12	PREDICTED: Rattus norvegicus CDC23 (cell division cycle 23, yeast, homolog) (Cdc23), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence IEA]; The cell cycle process whereby chromosomes are aligned at the metaphase plate, a plane halfway between the poles of the mitotic spindle, during mitosis [goid 7080] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9910563-S	ILMN_292441	SFRS12	NM_020092.1	NM_020092.1		56763	9910563	NM_020092.1	Sfrs12	NP_064477.1	ILMN_1362459	0002030500	S	1219	GAACGGGACCACATCAGTGACAGGAGAGAAAGAGAGCGTTCCACCTCCAC	2	+	34708935-34708984	2q13	Rattus norvegicus splicing factor, arginine/serine-rich 12 (Sfrs12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Srrp86	Srrp86
Rattus norvegicus	RefSeq	GI_62653209-S	ILMN_64191	MMP13	XM_343345.3	XM_343345.3		171052	109483045	XM_343345.3	Mmp13	XP_343346.1	ILMN_1358246	0004050767	S	1488	GGGTTACTCTTAGGTGTATACTGTGGGGAGTGGAGATATCAGGGGAGAGC	8	+	4168034-4168083	8q11	PREDICTED: Rattus norvegicus matrix metallopeptidase 13 (Mmp13), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; Any collagen polymer in which collagen triple helices associate to form fibrils [goid 5583] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates [goid 46581] [evidence IDA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence IEA]; The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells [goid 30574] [evidence ISS]; The process by which cell surface receptors are monoubiquitinated following ligand-induced activation, and subsequently taken up into endocytic vesicles and targeted to the lysosome or vacuole for degradation; serves as a mechanism to downregulate receptor signaling [goid 31623] [evidence IGI]; The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. Morphogenesis pertains to the creation of form. The hindlimbs are the posterior limbs of an animal [goid 35116] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another [goid 43171] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]	Interacting selectively with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids [goid 1968] [evidence IPI]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IDA]; Interacting selectively with a low density lipoprotein receptor [goid 50750] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62643924-S	ILMN_288689	LIX1L	NM_001024303.1	NM_001024303.1		499677	66730318	NM_001024303.1	Lix1l	NP_001019474.1	ILMN_1360155	0003610411	S	3132	GGATCAGAGTAGGGTGTCCAGTTAGATTGGTGTCAGTGCTTGGAGAAGGG	2	+	191426157-191426206	2q34	Rattus norvegicus Lix1 homolog (mouse)-like (Lix1l), mRNA.					
Rattus norvegicus	RefSeq	GI_62652031-S	ILMN_48875	USP44_PREDICTED	XM_235070.4	XM_235070.4		314746	109480477	XM_235070.4	Usp44_predicted	XP_235070.4	ILMN_1359606	0003520347	S	2336	AGCTCCTGTCCAACAGCCAGCAGCACCCCAGTGAAGAAACGGACACCTCT	7	+	30971120-30971169	7q13	PREDICTED: Rattus norvegicus ubiquitin specific protease 44 (predicted) (Usp44_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643438-S	ILMN_262466	GLRP1_PREDICTED	XM_001056426.1	XM_001056426.1		310405	109466632	XM_001056426.1	Glrp1_predicted	XP_001056426.1	ILMN_1375127	0002100500	S	3587	CTGACAGTAGAAGGCACGGGTGTCCATCCCCAGCTCCGTGGGGCACCATT				2q26	PREDICTED: Rattus norvegicus glutamine repeat protein 1 (predicted) (Glrp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9506840-S	ILMN_275259	KLRC2	NM_019261.1	NM_019261.1		29684	9506840	NM_019261.1	Klrc2	NP_062134.1	ILMN_1374547	0006290575	S	853	GACTGCTCTTGAATGACTGGAAGTCTCCGCTCATAGTCATTACAGGACAC	4	-	166957017-166957066	4q42	Rattus norvegicus killer cell lectin-like receptor subfamily C, member 2 (Klrc2), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	rNKG2C; Nkg2E	rNKG2C; Nkg2E
Rattus norvegicus	RefSeq	GI_55741783-A	ILMN_274363	STAU2	NM_001007150.1	NM_001007150.1		171500	55741783	NM_001007150.1	Stau2	NP_001007151.1	ILMN_1376567	0007100458	S	1288	TCAGCCCCAGCTGCCAGGGAACTCCTAATGAATGGAACATCTCCTGCTGC	5	+	2085618-2085667	5q11	Rattus norvegicus staufen, RNA binding protein, homolog 2 (Drosophila) (Stau2), transcript variant SS, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]	MGC93196	MGC93196
Rattus norvegicus	RefSeq	GI_62648378-S	ILMN_65767	LOC502885	XM_578386.1	XM_578386.1		502885	62648378	XM_578386.1	LOC502885	XP_578386.1	ILMN_1358145	0000780017	S	1901	CCCCAGGGTCCCCAAGGCTGTCTATGTCAGGATCAAAGAGTCACCAAGAG				4q42	PREDICTED: Rattus norvegicus similar to growth/differentiation factor GDF-3 precursor - mouse (LOC502885), mRNA.					
Rattus norvegicus	RefSeq	GI_47576342-S	ILMN_278816	OLR916	NM_001000587.1	NM_001000587.1		366797	47576342	NM_001000587.1	Olr916	NP_001000587.1	ILMN_1366393	0001940500	S	560	CAGACACTTGGCTCATAGAGCAGCTGGTGATTATTTGTGCACTGCTGACC	7	-	3938345-3938394	7q11	Rattus norvegicus olfactory receptor 916 (Olr916), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr916	Olr916
Rattus norvegicus	RefSeq	GI_62643503-S	ILMN_269524	MBNL1	XM_001062557.1	XM_001062557.1		282635	109466719	XM_001062557.1	Mbnl1	XP_001062557.1	ILMN_1353503	0003520112	S	1079	CAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCGTTCCTCCCACC				2q31	PREDICTED: Rattus norvegicus muscleblind-like 1 (Drosophila) (Mbnl1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence IEA]; Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence IEA]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]	Interacting selectively with double-stranded RNA [goid 3725] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62658829-S	ILMN_50381	NCOR2_PREDICTED	XM_341072.3	XM_341072.3		360801	109495824	XM_341072.3	Ncor2_predicted	XP_341073.2	ILMN_1361214	0004540685	S	8155	CTATGGCGATGGCGGGGAAGGCAGGTGTAAATGGTGTTGGCTTACAGGGT	12	+	32725401-32725450	12q15	PREDICTED: Rattus norvegicus nuclear receptor co-repressor 2 (predicted) (Ncor2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649395-S	ILMN_287133	RGD1305274_PREDICTED	XM_001066987.1	XM_001066987.1		298377	109476978	XM_001066987.1	RGD1305274_predicted	XP_001066987.1	ILMN_1350104	0004590020	S	589	GCCATGTTTGGGCCTGTGCCAATGCCAGCCGCATGTACAAACTGGGGGAT				5q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010305A19 (predicted) (RGD1305274_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662051-S	ILMN_283512	FARP1_PREDICTED	XM_001078859.1	XM_001078859.1		306183	109502961	XM_001078859.1	Farp1_predicted	XP_001078859.1	ILMN_1353935	0005050176	S	3487	CCGTGTCAGAGAAGACATGGCGAGTGGGCTTTTCACCTACAGACTGCGGC				15q24-q25	PREDICTED: Rattus norvegicus FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) (predicted) (Farp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662134	ILMN_283512	FARP1_PREDICTED	XM_001078859.1	XM_001078859.1		306183	109502961	XM_001078859.1	Farp1_predicted	XP_001078859.1	ILMN_1650665	0001500019	S	51	AGAGAACTCGGGGATCAGCACCTTGGAACGAGGACAGAAACCACCGCCCA				15q24-q25	PREDICTED: Rattus norvegicus FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) (predicted) (Farp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654580-S	ILMN_64729	LOC503235	XM_578765.1	XM_578765.1		503235	62654580	XM_578765.1	LOC503235	XP_578765.1	ILMN_1349440	0002100242	S	278	AGGAAGTGTCTACACGCAGCCCATTAAACATGAAGCCTCGCTGCTGAGCC					PREDICTED: Rattus norvegicus similar to tripartite motif-containing 42 (LOC503235), mRNA.					
Rattus norvegicus	RefSeq	GI_8394462-S	ILMN_281053	TNNI1	NM_017184.1	NM_017184.1		29388	8394462	NM_017184.1	Tnni1	NP_058880.1	ILMN_1354309	0005080167	S	647	TGGGGCACTCAGGAGAAGGGATGGGAGGCTGACCCAACGTACAGAACTCT	13	+	48841083-48841132	13q13	Rattus norvegicus troponin I type 1 (skeletal, slow) (Tnni1), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction [goid 5861] [evidence IDA]	Any process that modulates the frequency, rate or extent of muscle contraction [goid 6937] [evidence IDA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence IEA]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_38454255-S	ILMN_262646	RAP2IP	NM_198758.1	NM_198758.1		303569	38454255	NM_198758.1	Rap2ip	NP_942053.1	ILMN_1362173	0006290215	S	634	TCAGGTCCCAGCTAGCCTCGGGTCTCTAGGGAAAGACAACCTGAGCCTCT	10	+	91509807-91509837:91509838-91509856	10q32.1	Rattus norvegicus Rap2 interacting protein (Rap2ip), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence IDA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Increases the activity of guanylate cyclase [goid 30250] [evidence IDA]	GCRP	GCRP
Rattus norvegicus	RefSeq	GI_62657108-S	ILMN_272844	RGD1562309_PREDICTED	XM_577124.1	XM_577124.1		501720	62657108	XM_577124.1	RGD1562309_predicted	XP_577124.1	ILMN_1368231	0002370193	S	3	GTCCAGGAAATGGCCTTTGGTCAGCACTGTCCAGGTATATAAAGGGACCC	10	-	88569780-88569829	10q32.1	PREDICTED: Rattus norvegicus similar to keratin associated protein 2-4 (predicted) (RGD1562309_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648884-S	ILMN_276019	CAR9_PREDICTED	XM_001069821.1	XM_001069821.1		313495	109476398	XM_001069821.1	Car9_predicted	XP_001069821.1	ILMN_1350670	0001090451	S	1113	CCGAGCCACACAACCTTTGAATGGGCGAACGATTGAGGCTTCCTTCCCTG				5q22	PREDICTED: Rattus norvegicus carbonic anhydrase 9 (predicted) (Car9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485378-S	ILMN_286287	LOC362855	NM_207614.1	NM_207614.1		362855	46485378	NM_207614.1	LOC362855	NP_997497.1	ILMN_1361783	0006420632	S	1510	AAAGGATAGATCCAAGACTGTCAGCATCTCTGAGGTGCCCATGGACTGAG	7	+	20064974-20064982:20064983-20065023	7q13	Rattus norvegicus P55 (LOC362855), mRNA.					
Rattus norvegicus	RefSeq	GI_18543340-S	ILMN_268191	ACSL6	NM_130739.1	NM_130739.1		117243	18543340	NM_130739.1	Acsl6	NP_570095.1	ILMN_1357311	0005550706	S	2212	GCTGTACTCAATCTCCATGTGAAGCTCAAGGAGGCCCTTCTCAGCCCAGC	10	+	39777835-39777884	10q22	Rattus norvegicus acyl-CoA synthetase long-chain family member 6 (Acsl6), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron [goid 7405] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IDA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence ISS]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	Facl6; Lacsl	Facl6; Lacsl
Rattus norvegicus	RefSeq	GI_62659404-S	ILMN_66800	LOC305087	XM_223094.3	XM_223094.3		305087	62659404	XM_223094.3	LOC305087	XP_223094.3	ILMN_1369109	0004730400	S	60	ACGGATGGCTTCAGGAGGACCCAGATCGAAGCTCAAGAAGCAGAGGGACC				13q13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L9 (LOC305087), mRNA.					
Rattus norvegicus	RefSeq	GI_6981273-S	ILMN_274220	NMBR	NM_012799.1	NM_012799.1		25264	6981273	NM_012799.1	Nmbr	NP_036931.1	ILMN_1370171	0001190100	S	1396	TACACTGCTCCCCAGCTAATTCATGATTGACTCAAGCGCAAGGCACGCAC				1p13	Rattus norvegicus neuromedin B receptor (Nmbr), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with bombesin to initiate a change in cell activity [goid 4946] [evidence IEA]; Combining with a neuropeptide to initiate a change in cell activity [goid 8188] [evidence IPI]	NMB-R	NMB-R
Rattus norvegicus	RefSeq	GI_48976084-S	ILMN_282496	GM2A	NM_172335.2	NM_172335.2		282838	48976084	NM_172335.2	Gm2a	NP_758838.2	ILMN_1349855	0001660685	S	1703	CCTCAAGGTCAAGTCCTTGGTACCAGACCTCAGAGAGGGCTCAGCCTGCA	10	+	40514408-40514457	10q22	Rattus norvegicus GM2 ganglioside activator (Gm2a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A protein complex that possesses hydrogen:potassium-exchanging ATPase activity; characterized in animal cells, where it maintains ionic gradients of Na+ and K+ at the expense of ATP hydrolysis; The complex contains two obligatory subunits, the catalytic alpha subunit and a glycosylated beta subunit; two additional subunits, gamma and channel-inducing factor (CHIF), may also be present [goid 5889] [evidence IDA]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence IDA]; The region that lies just beneath the plasma membrane on the apical edge of a cell [goid 45179] [evidence IDA]	The chemical reactions and pathways involving ceramide oligosaccharides carrying in addition to other sugar residues, one or more sialic acid residues [goid 1573] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues [goid 6689] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues [goid 6689] [evidence ISS]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IDA]; The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IDA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEA]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9313] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages [goid 9313] [evidence ISS]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence IEA]; The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development [goid 19915] [evidence ISS]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence IEA]; A organ system process carried out by any of the organs or tissues of neurological system [goid 50877] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51345] [evidence IDA]	Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides [goid 4563] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IDA]; Increases the activity of an enzyme [goid 8047] [evidence IEA]; Increases the activity of an enzyme [goid 8047] [evidence ISS]; Interacting selectively with a lipid [goid 8289] [evidence IC ]; Increases the activity of a phospholipase, an enzyme that catalyzes of the hydrolysis of a glycerophospholipid [goid 16004] [evidence IDA]; Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-beta-D-galactosaminides [goid 32428] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62650288-S	ILMN_52291	LOC362694	XM_343011.2	XM_343011.2		362694	62650288	XM_343011.2	LOC362694	XP_343012.2	ILMN_1370293	0001740707	S	1784	CTAAGTGGGTCTGAGCACGCCGGTACATTTTACGTCAGCAAGGCTCCGTG					PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23451 (LOC362694), mRNA.					
Rattus norvegicus	RefSeq	GI_62649760-S	ILMN_280565	YTHDF2_PREDICTED	XM_001063404.1	XM_001063404.1		313053	109477388	XM_001063404.1	Ythdf2_predicted	XP_001063404.1	ILMN_1360649	0004850671	S	2422	GGAGAACACTTGAGTTGCGCAGATTTTGGGTGTCCACCCCAGAAAGTGGG				5q36	PREDICTED: Rattus norvegicus YTH domain family 2 (predicted) (Ythdf2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718798-S	ILMN_63030	LOC363424	XM_343747.2	XM_343747.2		363424	62718798	XM_343747.2	LOC363424	XP_343748.2	ILMN_1360342	0003360497	S	503	GGACACACCCCAGTAAGAGAGCTTCCTAAAGAATAAGTTCCGTTCTCAGG					PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC363424), mRNA.					
Rattus norvegicus	RefSeq	GI_62651280-S	ILMN_272977	KNS2	XM_001072695.1	XM_001072695.1		171041	109479968	XM_001072695.1	Kns2	XP_001072695.1	ILMN_1352273	0005340494	S	1744	CTGCACCACTAGTAGGGTCTTGGAGAGCAACTCTCAGTGAGGCTGGTGAC				6q32	PREDICTED: Rattus norvegicus kinesin 2, transcript variant 2 (Kns2), mRNA.					
Rattus norvegicus	RefSeq	GI_62644595-S	ILMN_60971	LOC365961	XM_345301.2	XM_345301.2		365961	62644595	XM_345301.2	LOC365961	XP_345302.2	ILMN_1373782	0003840162	S	818	AGATGAGGGTCATGCTCACCAGAGGACAGGGGATGAGGGTCATGCTCACC					PREDICTED: Rattus norvegicus similar to histidine rich calcium binding protein (LOC365961), mRNA.					
Rattus norvegicus	RefSeq	GI_62650244-S	ILMN_50189	CDC42EP3_PREDICTED	XM_233815.3	XM_233815.3		313838	62650244	XM_233815.3	Cdc42ep3_predicted	XP_233815.2	ILMN_1352848	0006180500	S	2137	TGGGGTAGGTATTCAAGAACAGCTCACGTCCACATGGCTTGGGTCCATCA				6q11	PREDICTED: Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 3 (predicted) (Cdc42ep3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644048-S	ILMN_56647	LOC497761	XM_579351.1	XM_579351.1		497761	62644048	XM_579351.1	LOC497761	XP_579351.1	ILMN_1358029	0006400035	S	591	GTGCAAGGCAGTAAACAGGGTCAGCCAGGAGTCTGAGATGGAAGTTGTCA				2q34	PREDICTED: Rattus norvegicus hypothetical gene supported by NM_012830 (LOC497761), mRNA.					
Rattus norvegicus	RefSeq	GI_62648214-S	ILMN_288738	LOC689770	XM_001071945.1	XM_001071945.1		689770	109472686	XM_001071945.1	LOC689770	XP_001071945.1	ILMN_1359515	0004540113	S	497	GGAGTTCGAATCCCTGGATTGGCCTGCACAGAGAGTCATCAGCGCACCCT	4	-	165921185-165921234	4q42	PREDICTED: Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689770), mRNA.					
Rattus norvegicus	RefSeq	GI_62643021-S	ILMN_50426	LOC294789	XM_215498.3	XM_215498.3		294789	62643021	XM_215498.3	LOC294789	XP_215498.3	ILMN_1374825	0005690128	S	2914	CACTGAAACGCCAGACCATCCTGAGAAGACTCTACTCCCACCTTAAAGAG				2q16	PREDICTED: Rattus norvegicus similar to Hypothetical protein FLJ25422 (predicted) (LOC294789), mRNA.					
Rattus norvegicus	RefSeq	GI_34882514-S	ILMN_288034	LOC363337	NM_001014221.1	NM_001014221.1		363337	62079176	NM_001014221.1	LOC363337	NP_001014243.1	ILMN_1352819	0004810142	S	1123	TGGTCCCACTGAAGCAGGAGAGCAAGGAGGTACATCTTCATTGTGCACTG	Un|NW_047983.1	-	142804-142853		Rattus norvegicus similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA.					
Rattus norvegicus	RefSeq	GI_6980961-S	ILMN_267700	GNAI1	NM_013145.1	NM_013145.1		25686	6980961	NM_013145.1	Gnai1	NP_037277.1	ILMN_1351156	0004150435	S	1362	CCAGCAACAGAGAATGTAGTGTACAGCAAATGCATCCTGGACCTGACCAG	4	+	12494332-12494381	4q11	Rattus norvegicus guanine nucleotide binding protein (G protein), alpha inhibiting 1 (Gnai1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence TAS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50805] [evidence IMP]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate [goid 19001] [evidence IEA]	BPGTPB	BPGTPB
Rattus norvegicus	RefSeq	GI_13929011-S	ILMN_282045	HTRA1	NM_031721.1	NM_031721.1		65164	13929011	NM_031721.1	Htra1	NP_113909.1	ILMN_1349449	0000060594	S	1865	CCGAGTCAGCACTCAGAGGAAATTGATGCCCTGAGACCACAGGTGGGTGA	1	+	190308178-190308227	1q37	Rattus norvegicus HtrA serine peptidase 1 (Htra1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway [goid 30512] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway activity [goid 30514] [evidence ISS]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Prss11; MGC93339	Prss11; MGC93339
Rattus norvegicus	RefSeq	GI_62656093-S	ILMN_48029	RGD1562251_PREDICTED	XM_573094.2	XM_573094.2		497906	109488110	XM_573094.2	RGD1562251_predicted	XP_573094.2	ILMN_1350947	0005050041	S	815	AGAGAGCAAAAGCCACTCCATTCTTCTCCCAGGATGGATGAGGTGGGGGG	10	-	40456794-40456843	10q22	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 11, ERATO Doi 461, expressed (predicted) (RGD1562251_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34866186-S	ILMN_161833	LOC362486	XM_342805.1	XM_342805.1			34866186	XM_342805.1	LOC362486		ILMN_2039877	0001340356	S	514	GCTTGGATGGGGTGAGAAGTCTGAGTCTTGTGTGGCGAGGCAAGTTCCTG					Rattus norvegicus similar to Mic2l1 (LOC362486), mRNA.					
Rattus norvegicus	RefSeq	GI_9507188-S	ILMN_293682	TIMM23	NM_019352.1	NM_019352.1		54312	9507188	NM_019352.1	Timm23	NP_062225.1	ILMN_1354707	0006520398	S	898	TGCCCTCTGAGTGGAAGCCAAACCCTTGGTGGCTCACTGAGAATGTGTTC	16	-	7663354-7663403	16p16	Rattus norvegicus translocase of inner mitochondrial membrane 23 homolog (yeast) (Timm23), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IMP]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IPI]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IEA]; The region between the inner and outer lipid bilayers of the mitochondrial envelope [goid 5758] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IPI]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IPI]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IEA]	MGC93478	MGC93478
Rattus norvegicus	RefSeq	GI_62647060-S	ILMN_48621	AASS_PREDICTED	XM_231524.4	XM_231524.4		296925	109471810	XM_231524.4	Aass_predicted	XP_231524.4	ILMN_1373215	0001570619	S	2623	GGCTTACTGGGGGATGAGCAGGTTCCTCAGGCAGAGTCCATTGTGGATGC	4	-	49482867-49482916	4q22	PREDICTED: Rattus norvegicus aminoadipate-semialdehyde synthase (predicted) (Aass_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527451-A	ILMN_283105	WNT7B	NM_001009695.1	NM_001009695.1		315196	57527451	NM_001009695.1	Wnt7b	NP_001009695.1	ILMN_1376325	0004780088	S	993	TTGCTTCGTCAAGTGCAACACGTGCAGCGAGCGCACCGAGGTCTTCACCT				7q34	Rattus norvegicus wingless-related MMTV integration site 7B (Wnt7b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC) [goid 7223] [evidence IEA]; The initiation of the activity of the inactive enzyme JUN kinase by phosphorylation by a JUN kinase kinase (JNKK) [goid 7257] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; A process that modulates the size of a cell projection [goid 32536] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IDA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662181-S	ILMN_296138	RGD1307583_PREDICTED	XM_001062546.1	XM_001062546.1		361111	109503808	XM_001062546.1	RGD1307583_predicted	XP_001062546.1	ILMN_1372171	0001580364	S	142	TTCGCGGGACGCGCAGGGACGTTTGTACTGCCTCTAGGAACACCAGTCTA				16p16	PREDICTED: Rattus norvegicus LOC361111 (predicted) (RGD1307583_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657386-S	ILMN_276884	RGD1563123_PREDICTED	XM_001081756.1	XM_001081756.1		360668	109492280	XM_001081756.1	RGD1563123_predicted	XP_001081756.1	ILMN_1373455	0003170446	S	2589	ACTGGCTGCCTTGTGAGGGAGGCTGGCTGTGAGGTGACTGTGTGGCTCAC				10q32.3	PREDICTED: Rattus norvegicus similar to SEC14-like 1 (predicted) (RGD1563123_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643915-S	ILMN_271530	BOLA1_PREDICTED	XM_001061740.1	XM_001061740.1		365875	109467204	XM_001061740.1	Bola1_predicted	XP_001061740.1	ILMN_1351283	0001400368	S	595	GTACGGACCAGGGCTTCTGCCCTTTCTGCTAATGTACACCATGCAAAGGC				2q34	PREDICTED: Rattus norvegicus bolA-like 1 (E. coli) (predicted) (Bola1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663989	ILMN_272155	RGD1308454	NM_001014241.1	NM_001014241.1		364798	62079212	NM_001014241.1	RGD1308454	NP_001014263.1	ILMN_1650278	0001500390	S	1101	GACCCTCTTACAACCAGTGAGACAAGCGTGAAGAAGATACAAACCTGCAG	17	+	96899220-96899269	17q12.3	Rattus norvegicus similar to RIKEN cDNA 4921537P18 (RGD1308454), mRNA.					
Rattus norvegicus	RefSeq	GI_62646663-S	ILMN_276494	RGD1560433_PREDICTED	XM_001061644.1	XM_001061644.1		296750	109472959	XM_001061644.1	RGD1560433_predicted	XP_001061644.1	ILMN_1362329	0000060435	S	2484	CGTCCTTCAGTCAGCTTCCGAGCACATTCCCGCCACAGCAGCCTTAAATG				4q11	PREDICTED: Rattus norvegicus similar to 1500019C06Rik protein (predicted) (RGD1560433_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648140-S	ILMN_54183	C1R	XM_242644.4	XM_242644.4		312705	109472560	XM_242644.4	C1r	XP_242644.3	ILMN_1364055	0003170736	S	2208	CCTGGGGCATTGGGTGTGGTGAGGGATACGGCTTTTACACCAAGTTACTG	4	+	160728767-160728816	4q42	PREDICTED: Rattus norvegicus complement component 1, r subcomponent (C1r), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645163	ILMN_299232	GALNT3	NM_001015032.2	NM_001015032.2		366061	75832149	NM_001015032.2	Galnt3	NP_001015032.2	ILMN_1650307	0004730086	S	2640	GCCCATGCCACTCGATGCACACGAGTCTTCCCCAAATGGCTTTTCTGAAG	3	-	48026186-48026235	3q21	Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) (Galnt3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	The posttranslational glycosylation of protein via the O3 atom of peptidyl-serine, forming O3-glycosyl-L-serine; the most common forms are N-acetylgalactosaminyl, mannosyl, galactosyl, and xylosyl serine [goid 18242] [evidence ISS]; The posttranslational glycosylation of protein via the O3 atom of peptidyl-serine, forming O3-glycosyl-L-serine; the most common forms are N-acetylgalactosaminyl, mannosyl, galactosyl, and xylosyl serine [goid 18242] [evidence IEA]; The posttranslational glycosylation of protein via the O3 atom of peptidyl-threonine, forming O3-glycosyl-L-threonine; the most common forms are N-acetylgalactosaminyl, mannosyl, and galactosyl threonine [goid 18243] [evidence ISS]; The posttranslational glycosylation of protein via the O3 atom of peptidyl-threonine, forming O3-glycosyl-L-threonine; the most common forms are N-acetylgalactosaminyl, mannosyl, and galactosyl threonine [goid 18243] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	MGC124508	MGC124508
Rattus norvegicus	RefSeq	GI_47777749-S	ILMN_288754	OLR1051	NM_001001364.1	NM_001001364.1		288839	47777749	NM_001001364.1	Olr1051	NP_001001364.1	ILMN_1370478	0004060280	S	781	GCAGAGGAGAGAATATCTTTAAACAAGGGGGTTGCCATACTCACTCTTGC	7	-	7714965-7715014	7q11	Rattus norvegicus olfactory receptor 1051 (Olr1051), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1051	Olr1051
Rattus norvegicus	RefSeq	GI_62653634-S	ILMN_262680	LOC690279	XM_001073947.1	XM_001073947.1		690279	109483446	XM_001073947.1	LOC690279	XP_001073947.1	ILMN_1355022	0002810497	S	1029	AGCTTGTGCGCGACTGGATGCCAAGGATGGAGTTGGCTGTACTCCCTTGC	8	-	52715220-52715269	8q23	PREDICTED: Rattus norvegicus similar to ankyrin repeat and kinase domain containing 1 (LOC690279), mRNA.					
Rattus norvegicus	RefSeq	GI_27465574-S	ILMN_279547	CYP4F4	NM_173123.1	NM_173123.1		286904	27465574	NM_173123.1	Cyp4f4	NP_775146.1	ILMN_1368015	0007100390	S	1920	TCTCTTGGGCGACAGAGAGCTAAGGTAAGTGTCTAAGCAGGCTCGAGCTC	7	+	13309235-13309284	7q11	Rattus norvegicus cytochrome P450, family 4, subfamily f, polypeptide 4 (Cyp4f4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653590-S	ILMN_293146	PHLDB1	XM_001067414.1	XM_001067414.1		171434	109484609	XM_001067414.1	Phldb1	XP_001067414.1	ILMN_1371471	0002570048	S	4182	GCGCTGGTTTGTCTTTGACCGGCTGAAGCGCACCCTTTCCTACTATGTGG				8q22	PREDICTED: Rattus norvegicus pleckstrin homology-like domain, family B, member 1 (Phldb1), mRNA.					
Rattus norvegicus	RefSeq	GI_62639610-S	ILMN_267637	ATPBD3_PREDICTED	XM_001080387.1	XM_001080387.1		292847	109461824	XM_001080387.1	Atpbd3_predicted	XP_001080387.1	ILMN_1356975	0003120609	S	1057	TCCAAAGATGAATCCAACCCATGCGGAAATGGAGGGGACCGGGCAGGAGC				1q22	PREDICTED: Rattus norvegicus ATP binding domain 3 (predicted) (Atpbd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850651-S	ILMN_296015	THAP4	NM_001005564.1	NM_001005564.1		363291	53850651	NM_001005564.1	Thap4	NP_001005564.1	ILMN_1354690	0002360398	S	1720	CACATTACCTACAAGAAGGTGACCCCTTAACCCGGAGCCCCTCCTAGAGC	9	-	92989231-92989251:92989252-92989280	9q36	Rattus norvegicus THAP domain containing 4 (Thap4), mRNA.			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC93755	MGC93755
Rattus norvegicus	RefSeq	GI_62717996-S	ILMN_59981	LOC501273	XM_580183.1	XM_580183.1		501273	62717996	XM_580183.1	LOC501273	XP_580183.1	ILMN_1353969	0001190086	S	288	GCAAGGCCCATGGACAGAGAGATCACACCAGCTCGGGACAATCTGTAAGG					PREDICTED: Rattus norvegicus LOC501273 (LOC501273), mRNA.					
Rattus norvegicus	RefSeq	GI_62663706-S	ILMN_285505	LOC688970	XM_001069010.1	XM_001069010.1		688970	109505103	XM_001069010.1	LOC688970	XP_001069010.1	ILMN_1368174	0005900451	S	1370	GGCTACCAGCAAACAAGGACCAACACTCTCCAGCTCGACCTCCTCGACTA	17	+	67169153-67169202	17q12.1	PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC688970), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18426853-S	ILMN_274099	GGT7	NM_130423.1	NM_130423.1		156275	18426853	NM_130423.1	Ggt7	NP_569107.1	ILMN_1360421	0004070059	S	2461	CATTTGCAGGTTCCCAGGCAGCCGAGTAGGGGTGGGGGTGGGTATCAGCT	3	-	145987577-145987626	3q42	Rattus norvegicus gamma-glutamyltransferase 7 (Ggt7), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins [goid 6750] [evidence IEA]	Catalysis of the reaction: (5-L-glutamyl)-peptide + an amino acid = peptide + 5-L-glutamyl-amino acid [goid 3840] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656881-S	ILMN_278030	UBE2Z	NM_001037643.1	NM_001037643.1		303478	83320075	NM_001037643.1	Ube2z	NP_001032732.1	ILMN_1367682	0002470100	S	957	AAGCGGGGCCACTTTGACTACCAGTCCCTCTTGATGCGCCTCGGACTGAT	10	-	84764255-84764304	10q31	Rattus norvegicus ubiquitin-conjugating enzyme E2Z (putative) (Ube2z), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome [goid 43687] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence IEA]	Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]	RGD1308347; MGC124852	RGD1308347; MGC124852
Rattus norvegicus	RefSeq	GI_47575902-S	ILMN_272651	OLR1460	NM_001000769.1	NM_001000769.1		405044	47575902	NM_001000769.1	Olr1460	NP_001000769.1	ILMN_1371707	0001170670	S	441	GGTGAGTGGGGCCATCTACTCAGCCTTCCATACGTTCAACACCTTCTCCC	10	+	45090707-45090756	10q22	Rattus norvegicus olfactory receptor 1460 (Olr1460), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1460	Olr1460
Rattus norvegicus	RefSeq	GI_62650749-S	ILMN_268778	RGD1307897	XR_009631.1	XR_009631.1		314172	109479452	XR_009631.1	RGD1307897		ILMN_1371455	0000540671	S	6000	GATGGTGAACAGCTCCCCTGAAGAAATCTCCACATGTGCGCAAGTAACTC				6q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA C730036B14 gene (RGD1307897), misc RNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides [goid 6259] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_9506872-S	ILMN_293523	SMAD2	NM_019191.1	NM_019191.1		29357	9506872	NM_019191.1	Smad2	NP_062064.1	ILMN_1360346	0005700273	S	1613	CCCGTGGACTGTGCTAGTCAAAACCCAGAGCGAAAACAGCACTTGAGGTC	18	+	73241215-73241264	18q12.3	Rattus norvegicus SMAD family member 2 (Smad2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of the paraxial mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48340] [evidence ISS]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence ISS]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence ISS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]	Madh2; MGC156656	Madh2; MGC156656
Rattus norvegicus	RefSeq	GI_47576560-S	ILMN_265689	OLR1644	NM_001000101.1	NM_001000101.1		290055	47576560	NM_001000101.1	Olr1644	NP_001000101.1	ILMN_1373729	0000630537	S	461	GGGGCACCATCCACTCCATATCTCTTACCTCACTCACCATCAAACTTCCC	15	-	27944326-27944375	15p14	Rattus norvegicus olfactory receptor 1644 (Olr1644), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1644	Olr1644
Rattus norvegicus	RefSeq	GI_62640431-S	ILMN_48529	NDNL2	XM_219708.3	XM_219708.3		309259	109458872	XM_219708.3	Ndnl2	XP_219708.3	ILMN_1362344	0001850673	S	994	GCACAATACTGCGAGGCTTTGGCAGATGAGGAGAGTAGGGCCAGACCTGC	1	-	119276875-119276924	1q22	PREDICTED: Rattus norvegicus necdin-like 2 (Ndnl2), mRNA.		Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62638499-S	ILMN_294801	RGD1566297_PREDICTED	XR_008295.1	XR_008295.1		292259	109460722	XR_008295.1	RGD1566297_predicted		ILMN_1359622	0003780411	S	20	TGCTGGGGCACAAACAGATTCTGAAAACGATCCGACAAGGCAAAGCGAAG				1p11	PREDICTED: Rattus norvegicus similar to ribosomal protein L30 (predicted) (RGD1566297_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653162-S	ILMN_60715	STAB2	XM_238531.3	XM_238531.3		282580	62653162	XM_238531.3	Stab2	XP_238531.3	ILMN_1368553	0004480450	S	1231	GGCCCAACCAGGCCGTCTGTAACTGCTTGCCGAAGTACACTGGAGATGGA					PREDICTED: Rattus norvegicus stabilin 2 (Stab2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IDA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence IDA]; Interacting selectively with any part of a Gram-negative bacterial cell [goid 8368] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62654764-S	ILMN_51168	TCFAP2B_PREDICTED	XM_217356.4	XM_217356.4		301285	109485807	XM_217356.4	Tcfap2b_predicted	XP_217356.3	ILMN_1374764	0000630332	S	3009	CAGACACTGCCTCAAGAGTTCTGAGAAACAAGAGCTCCCCTCCTTTAGTG	9	+	18081795-18081844	9q13	PREDICTED: Rattus norvegicus transcription factor AP-2 beta (predicted) (Tcfap2b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666556-S	ILMN_59490	RGD1560784_PREDICTED	XM_343770.3	XM_343770.3		363449	109510464	XM_343770.3	RGD1560784_predicted	XP_343771.3	ILMN_1356324	0003360059	S	1225	TGGTCCTCCCAGCAGCAGGCGGAAAGCCGCAACATAGACTGTCAGAGGCT	X	-	26073184-26073233	Xq13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B630019K06 (predicted) (RGD1560784_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662045-S	ILMN_282221	RGD1560050_PREDICTED	XM_001078545.1	XM_001078545.1		306170	109502949	XM_001078545.1	RGD1560050_predicted	XP_001078545.1	ILMN_1370991	0006200450	S	677	GTCCCCGCAATCACAGCCACACCAGGTACTGTCCCATCTCATCAGGCATC				15q24	PREDICTED: Rattus norvegicus similar to heparan sulfate 6-sulfotransferase 3 (predicted) (RGD1560050_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652484-S	ILMN_275546	RGD1564515_PREDICTED	XM_235351.3	XM_235351.3		299963	62652484	XM_235351.3	RGD1564515_predicted	XP_235351.3	ILMN_1368885	0006040148	S	1297	TGAGCCTGTCCAGTCAGAGCCCAGCAACCCTGTGGAACTCCTAGTAGAAG	7	+	97619605-97619654	7q33	PREDICTED: Rattus norvegicus similar to alpha 1B-glycoprotein (predicted) (RGD1564515_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393436-S	ILMN_282446	GIF	NM_017162.1	NM_017162.1		29319	8393436	NM_017162.1	Gif	NP_058858.1	ILMN_1350090	0002480292	S	1383	TCCTGAGCCACGGTGTGGAATAAATGATGCAGGTTCCTGAGGTGCTCACC				1q43	Rattus norvegicus gastric intrinsic factor (Gif), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of cobalt (Co) ions into, out of, within or between cells [goid 6824] [evidence IEA]; The chemical reactions and pathways involving cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 9235] [evidence IDA]; The directed movement of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom, into, out of or within a cell [goid 15889] [evidence IEA]	Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other [goid 15087] [evidence IEA]; Interacting selectively with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body [goid 19842] [evidence TAS]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence IEA]; Interacting selectively with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom [goid 31419] [evidence IDA]; Interacting selectively with a cobalt (Co) ion [goid 50897] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.22415	ILMN_161335	RN.22415	Rn.22415		Rn.22415		40826347	CK481999			ILMN_1530277	0001190193	S	93	AAATAAGGTGTCTTCTAAAACATTTCTGTTTCTGGTATCCTTTGAGTTTA					AGENCOURT_17606913 NIH_MGC_235 Rattus norvegicus cDNA clone IMAGE:7108930 5', mRNA					
Rattus norvegicus	RefSeq	GI_62641570-S	ILMN_69671	LOC499285	XM_574584.1	XM_574584.1		499285	62641570	XM_574584.1	LOC499285	XP_574584.1	ILMN_1371219	0002100170	S	3494	CTGGCTCTGCCGAATGGAACAAAGGACAACACAGACAGGCCCAGGAACGC				1q41	PREDICTED: Rattus norvegicus similar to cysteine-rich glycoprotein (LOC499285), mRNA.					
Rattus norvegicus	RefSeq	GI_62647264-S	ILMN_284255	LOC681895	XM_001058857.1	XM_001058857.1		681895	109473516	XM_001058857.1	LOC681895	XP_001058857.1	ILMN_1360945	0000360725	S	665	AAGATCCGTGTCAAAAGGGGTTCTTTGGCTGGAGACGGGTCTCTGCGTGG					PREDICTED: Rattus norvegicus hypothetical protein LOC681895 (LOC681895), mRNA.					
Rattus norvegicus	RefSeq	GI_62645335-S	ILMN_53826	RGD1305239_PREDICTED	XM_230042.4	XM_230042.4		295695	109468365	XM_230042.4	RGD1305239_predicted	XP_230042.4	ILMN_1362023	0006290441	S	4270	AGGCTTTGTCCAGGACGTCAGCCAGCTTTGGTCGCTTCTCCTCAGATGCC	3	+	65284478-65284527	3q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1305239_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648095-S	ILMN_52019	RAD52_PREDICTED	XM_216230.4	XM_216230.4		297561	109472515	XM_216230.4	Rad52_predicted	XP_216230.4	ILMN_1368944	0007000270	S	1516	GGCTGCCTTCCGTTTTAACGATGTAGCTCACCAAACCCAGTTTCATTGCC	4	+	156294890-156294939	4q42	PREDICTED: Rattus norvegicus RAD52 homolog (S. cerevisiae) (predicted) (Rad52_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651342-S	ILMN_58758	LOC500736	XM_576115.1	XM_576115.1		500736	62651342	XM_576115.1	LOC500736	XP_576115.1	ILMN_1368778	0006840524	S	381	TGAGGACACGGCCACTTATTACTGTGCAAGACACACAGTGAGTGAATGTC					PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC500736), mRNA.					
Rattus norvegicus	RefSeq	GI_13928787-S	ILMN_298263	PPYR1	NM_031581.1	NM_031581.1		29471	13928787	NM_031581.1	Ppyr1	NP_113769.1	ILMN_1360550	0006290722	S	763	TACATGCGTATCTACCAGCGCCTGCAGAGGCAGAGGCGTGCGTTCCACAC	16	-	9787614-9787663	16p16	Rattus norvegicus pancreatic polypeptide receptor 1 (Ppyr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence ISS]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IEA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IDA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence ISS]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62640761-S	ILMN_53035	LOC293044	XM_214980.3	XM_214980.3		293044	62640761	XM_214980.3	LOC293044	XP_214980.3	ILMN_1365654	0005900632	S	2064	AGTCTCCTGTCCAATTAGAGGCATAGGGAGGCTGGCCAAGGCCGAGACGT				1q31	PREDICTED: Rattus norvegicus similar to zinc finger protein 366 (predicted) (LOC293044), mRNA.					
Rattus norvegicus	RefSeq	GI_62648317-S	ILMN_62857	ETNK1_PREDICTED	XM_232515.3	XM_232515.3		312828	62648317	XM_232515.3	Etnk1_predicted	XP_232515.3	ILMN_1364002	0002760373	S	2340	AGTGGGCACAAGTCTGCCACCCTGATGGACGAGATTCAAAAGGTTCACAG				4q44	PREDICTED: Rattus norvegicus ethanolamine kinase 1 (predicted) (Etnk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27715066-S	ILMN_265982	RGD1565065_PREDICTED	XR_007405.1	XR_007405.1		298225	109476735	XR_007405.1	RGD1565065_predicted		ILMN_1364130	0006900121	S	342	GCTGGGATACTTGGAGTCGCTGGGTGGACTGAAAGCAGAGCGGAAGAGTG				5q32	PREDICTED: Rattus norvegicus similar to interferon epsilon-1 (predicted) (RGD1565065_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34852811-S	ILMN_275808	RGD1306565_PREDICTED	XM_001073260.1	XM_001073260.1		365057	109460508	XM_001073260.1	RGD1306565_predicted	XP_001073260.1	ILMN_1369813	0006900020	S	4004	GTCGGTTTCTGGCTGAGGATTACACGCTGGTGGATGTCCTTTACTACGTC				1p12	PREDICTED: Rattus norvegicus similar to apoptosis signal-regulating kinase 1 (predicted) (RGD1306565_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638263-S	ILMN_275808	RGD1306565_PREDICTED	XM_001073260.1	XM_001073260.1		365057	109460508	XM_001073260.1	RGD1306565_predicted	XP_001073260.1	ILMN_1358418	0006940341	S	1629	GGAGCTCGTGGACTTCTGGATGGATTTCCTGGTGGAGGCCACAAAGACAG				1p12	PREDICTED: Rattus norvegicus similar to apoptosis signal-regulating kinase 1 (predicted) (RGD1306565_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393645-S	ILMN_267848	KCNAB2	NM_017304.1	NM_017304.1		29738	8393645	NM_017304.1	Kcnab2	NP_059000.1	ILMN_1355212	0005390465	S	1423	CCTGAGTGAGGAGGGTCGCCGCCAGCAAGCCAAACTGAAGGAACTGCAGG	5	-	169624790-169624839	5q36	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, beta member 2 (Kcnab2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078822-S	ILMN_274404	RGD1308697	NM_001014046.1	NM_001014046.1		311328	62078822	NM_001014046.1	RGD1308697	NP_001014068.1	ILMN_1367951	0003060487	S	1956	TGGAGACTCTACCTATATTCCTGGGCTGAGGGCTGGACCACGGGACTTCC	3	-	105651452-105651501	3q35	Rattus norvegicus similar to hypothetical protein FLJ10579 (RGD1308697), mRNA.					
Rattus norvegicus	RefSeq	GI_11560092-S	ILMN_280254	FBXL20	NM_022272.1	NM_022272.1		64039	11560092	NM_022272.1	Fbxl20	NP_071608.1	ILMN_1355110	0002970603	S	725	TATGCAGAGGGTGTCATAAGTTGCAGTCTCTCTGTGCCTCTGGGTGCTCC	10	-	86863601-86863650	10q31	Rattus norvegicus F-box and leucine-rich repeat protein 20 (Fbxl20), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Fbl2; Fbxl2	Fbl2; Fbxl2
Rattus norvegicus	RefSeq	GI_62649864-S	ILMN_51443	ZFP46_PREDICTED	XM_233568.4	XM_233568.4		298558	109475673	XM_233568.4	Zfp46_predicted	XP_233568.4	ILMN_1351570	0004670095	S	1857	TTCACACCGACTAGGCCCTGTGTGCGAGTGGACTCGTTTGGAGGCCAAGT	5	+	155037300-155037313:155037314-155037349	5q36	PREDICTED: Rattus norvegicus zinc finger protein 46 (predicted) (Zfp46_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_28460701-S	ILMN_280821	COX6C1	NM_173303.1	NM_173303.1		286962	28460701	NM_173303.1	Cox6c1	NP_775425.1	ILMN_1355454	0005050403	S	511	GTGCATTCATTGTGGACCTGGGAGTTGCTGCTGCCCATAAGTTTGGTGCA	19	-	54398242-54398291	19q12	Rattus norvegicus cytochrome c oxidase subunit VIc-1 (Cox6c1), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]	COX-VIc-1	COX-VIc-1
Rattus norvegicus	RefSeq	GI_11559963-S	ILMN_271539	IL1RN	XM_001071294.1	XM_001071294.1		60582	109469408	XM_001071294.1	Il1rn	XP_001071294.1	ILMN_1361277	0001690647	S	289	GGTGCCTATTGACTTTCGGAATGTGTTCTTGGGCATCCACGGGGGCAAGC				3p13	PREDICTED: Rattus norvegicus interleukin 1 receptor antagonist, transcript variant 1 (Il1rn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence ISS]	A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IMP]; A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual [goid 2439] [evidence IEP]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IEA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a Type I interleukin-1 receptor [goid 5150] [evidence TAS]; Blocks the binding of interleukin-1 to the interleukin-1 receptor complex [goid 5152] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62656821-S	ILMN_70224	RGD1560058_PREDICTED	XM_220756.4	XM_220756.4		287559	109488654	XM_220756.4	RGD1560058_predicted	XP_220756.3	ILMN_1357963	0006290398	S	863	CAGTGGGGCCCTCAGTGAGGCAGTCCATGTTTCTCCGGCTTCCCCAGTGA				10q26	PREDICTED: Rattus norvegicus similar to prohibitin (predicted) (RGD1560058_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640953	ILMN_284381	RGD1559673_PREDICTED	XM_001065823.1	XM_001065823.1		499211	109462484	XM_001065823.1	RGD1559673_predicted	XP_001065823.1	ILMN_1649715	0003940402	S	3434	AGGTGTCCAGCAGGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGA				1q32	PREDICTED: Rattus norvegicus similar to hypothetical protein PP1665 (predicted) (RGD1559673_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758007-S	ILMN_280024	ATP2B1	NM_053311.1	NM_053311.1		29598	16758007	NM_053311.1	Atp2b1	NP_445763.1	ILMN_1349804	0002030309	S	4018	GAACAAGTCTGCTACCTCTTCGTCCCCAGGGAGCCCACTGCATAGTTTGG	7	+	36600069-36600118	7q13	Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 1 (Atp2b1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649630-S	ILMN_267077	CSF3R_PREDICTED	XM_001057564.1	XM_001057564.1		298518	109477224	XM_001057564.1	Csf3r_predicted	XP_001057564.1	ILMN_1370312	0001190446	S	2374	AGCCCCACCAGCCCAGAAGTAGTGGGATACCTTCGGTGTGACTCCACTCA				5q36	PREDICTED: Rattus norvegicus colony stimulating factor 3 receptor (granulocyte) (predicted) (Csf3r_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42476133-S	ILMN_296326	PTN	NM_017066.2	NM_017066.2		24924	42476133	NM_017066.2	Ptn	NP_058762.1	ILMN_1365825	0004050204	S	1118	TGAAAGTTAGAAAACCAGGAGAAGAAGAGAGGCAGAGCAACGGTGTAGTG	4	-	64078899-64078948	4q22	Rattus norvegicus pleiotrophin (Ptn), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]	Hbnf	Hbnf
Rattus norvegicus	RefSeq	GI_55741842-S	ILMN_272063	UNC84A	NM_001007147.1	NM_001007147.1		360773	55741842	NM_001007147.1	Unc84a	NP_001007148.1	ILMN_1364948	0004230458	S	2165	CAGCCTCTGGGACGGTTCACCTATGACCAGGAAGGGGACTCACTCCAGAT	12	-	15899564-15899613	12q11	Rattus norvegicus unc-84 homolog A (C. elegans) (Unc84a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the nuclear inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5639] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	MGC94535	MGC94535
Rattus norvegicus	RefSeq	GI_62661942-S	ILMN_69888	LOC502006	XM_577434.1	XM_577434.1		502006	62661942	XM_577434.1	LOC502006	XP_577434.1	ILMN_1363664	0006840156	S	563	CTTCTTCCCTCCTTCCATCCTGAGTTTCAATGTGATGCAGAAGGCCCGCC				15p12	PREDICTED: Rattus norvegicus similar to granzyme C (LOC502006), mRNA.					
Rattus norvegicus	RefSeq	GI_47576606-S	ILMN_266155	OLR1671	NM_001000266.1	NM_001000266.1		294138	47576606	NM_001000266.1	Olr1671	NP_001000266.1	ILMN_1359362	0001190064	S	437	CTGCAGCGTCCTGGGTATGTGGCTTTACCACCTCAGCACTTCATTCTTCC	20	-	178484-178533	20p12	Rattus norvegicus olfactory receptor 1671 (Olr1671), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1671	Olr1671
Rattus norvegicus	RefSeq	GI_16758175-S	ILMN_274596	XRCC1	NM_053435.1	NM_053435.1		84495	16758175	NM_053435.1	Xrcc1	NP_445887.1	ILMN_1370966	0005420647	S	1769	GACAGCTTTCAATGGTGAGCTCGAGGACTACATGAGCGACCGGGTCCAGT	1	+	79858978-79858989:79859906-79859943	1q21	Rattus norvegicus X-ray repair complementing defective repair in Chinese hamster cells 1 (Xrcc1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The repair of single strand breaks in DNA. Repair of such breaks is mediated by the same enzyme systems as are used in base excision repair [goid 12] [evidence IEA]; In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase [goid 6284] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism [goid 6974] [evidence IEP]	Interacting selectively with damaged DNA [goid 3684] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62651501	ILMN_67247	LOC503073	XM_578593.1	XM_578593.1		503073	62651501	XM_578593.1	LOC503073	XP_578593.1	ILMN_1650584	0004150358	S	147	CAGCTATGGTGTAATCTGGGTTCGCCAGCCTCCAGGAAAGGGTCTGGAGT					PREDICTED: Rattus norvegicus similar to Igh-1a_predicted protein (LOC503073), mRNA.					
Rattus norvegicus	RefSeq	GI_51854206-S	ILMN_270103	LOC685778	XM_001060860.1	XM_001060860.1		685778	109503591	XM_001060860.1	LOC685778	XP_001060860.1	ILMN_2039632	0003610608	S	2144	GGTACCATAGGAACACTGGGTGATCTGGGTAGAGGTGTGGGCATTTAAAC	16	-	87958791-87958840	16q12.5	PREDICTED: Rattus norvegicus similar to Pyruvate dehydrogenase E1 component alpha subunit, somatic form, mitochondrial precursor (PDHE1-A type I), transcript variant 1 (LOC685778), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide [goid 16624] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663001-S	ILMN_270103	LOC685778	XM_001060860.1	XM_001060860.1		685778	109503591	XM_001060860.1	LOC685778	XP_001060860.1	ILMN_1373643	0002030280	S	1081	CCGCCACTGGAGGAGCTAGGCTATCATATCTACAGCAGCGACCCTCCCTT	16	-	87959854-87959903	16q12.5	PREDICTED: Rattus norvegicus similar to Pyruvate dehydrogenase E1 component alpha subunit, somatic form, mitochondrial precursor (PDHE1-A type I), transcript variant 1 (LOC685778), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide [goid 16624] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741722-S	ILMN_281757	RAB11A	NM_031152.2	NM_031152.2		81830	55741722	NM_031152.2	Rab11a	NP_112414.1	ILMN_1349811	0005690435	S	2044	GCAGTGCTCATGATGTGTGGGGAGCACAGAAGGCATTGCTATAGTCAGTC	8	-	68932093-68932142	8q24	Rattus norvegicus RAB11a, member RAS oncogene family (Rab11a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding a recycling endosome [goid 55038] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645032-S	ILMN_61243	LOC366030	XM_345346.2	XM_345346.2		366030	62645032	XM_345346.2	LOC366030	XP_345347.2	ILMN_1366116	0006350280	S	882	TATGCAGGGCTCAGCTGGTGCAAAGACTGGCTGCCTGGTTCCTCCAGAGG				3q11	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16 (LOC366030), mRNA.					
Rattus norvegicus	RefSeq	GI_46048594-S	ILMN_296526	CNR2	NM_020543.3	NM_020543.3		57302	46048594	NM_020543.3	Cnr2	NP_065418.2	ILMN_1349765	0006380148	S	1023	GGCTGAGACTCTGGTCCTGAAGGATAAGCAGGAGTTGGGAGGAGACTGCC	5	+	154700545-154700551:154701711-154701753	5q36	Rattus norvegicus cannabinoid receptor 2 (macrophage) (Cnr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IDA]; Combining with cannabinoids to initiate a change in cell activity [goid 4949] [evidence IDA]; Combining with cannabinoids to initiate a change in cell activity [goid 4949] [evidence IEA]	CB2	CB2
Rattus norvegicus	Unigene	Rn.14945	ILMN_161527	RN.14945	Rn.14945		Rn.14945		33158953	CF106803			ILMN_1530235	0006020411	S	97	TAGGCAAAGCCTTTTCATCATAGCCAAATATAGAAAAACTGTAGATGTTT					Shultzomica00054 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig1469 5', mRNA					
Rattus norvegicus	RefSeq	GI_62658304-S	ILMN_63845	ELAVL1_PREDICTED	XM_344063.3	XM_344063.3		363854	109494935	XM_344063.3	Elavl1_predicted	XP_344064.3	ILMN_1370365	0002100372	S	2216	CCCAGGCACCAGTGAGAACGGACCAAAGAGTTTCAGGGCAGCTCCAGTAT	12	+	1499503-1499552	12p12	PREDICTED: Rattus norvegicus ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) (predicted) (Elavl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576624-S	ILMN_283785	OLR167	NM_001000173.1	NM_001000173.1		293314	47576624	NM_001000173.1	Olr167	NP_001000173.1	ILMN_1355828	0006220113	S	907	GAGCTCAAACAAGGTTTGTACAAGGTGCTTAGGCTGGATGTCAAAGGAGG	1	-	162452345-162452394	1q33	Rattus norvegicus olfactory receptor 167 (Olr167), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr167	Olr167
Rattus norvegicus	RefSeq	GI_62665486-S	ILMN_51197	LOC292053	XM_226521.3	XM_226521.3		292053	62665486	XM_226521.3	LOC292053	XP_226521.3	ILMN_1349222	0007000091	S	1252	ATATGGGAAGTCCTCCTCATGTGGCTAGTCCTCCTCATGTGGGAAGTCCT					PREDICTED: Rattus norvegicus similar to ENOD2 (LOC292053), mRNA.					
Rattus norvegicus	RefSeq	GI_29336098-S	ILMN_280098	VOM2R75	NM_173320.1	NM_173320.1		286986	29336098	NM_173320.1	Vom2r75	NP_775442.1	ILMN_1360308	0006980541	S	3222	AGGGATTGGGGAGGTCTGGGGTTTGGAGAGTTGCGGATTGTCCCTTGATG	18	-	34261-34310	18p13	Rattus norvegicus vomeronasal 2 receptor, 75 (Vom2r75), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]	Vom2r75	Vom2r75
Rattus norvegicus	RefSeq	GI_62650555-S	ILMN_65598	RGD1564116_PREDICTED	XM_578535.2	XM_578535.2		503018	109478042	XM_578535.2	RGD1564116_predicted	XP_578535.2	ILMN_1367773	0000780433	S	254	AAGGGAGAATGGGAGCCGTGGGGGAGCCTTTGTATTTTGCAGACATCCCC	6	-	32527883-32527932	6q14	PREDICTED: Rattus norvegicus similar to WD repeat domain 35 (predicted) (RGD1564116_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657238-S	ILMN_302124	FALZ_PREDICTED	XM_001081585.1	XM_001081585.1		303617	109492101	XM_001081585.1	Falz_predicted	XP_001081585.1	ILMN_1372536	0005420450	S	7820	CACCACTCACAGAGAAGGATTATGAGGGCTTGAAGAGGGTGCTGCGCTCC					PREDICTED: Rattus norvegicus fetal Alzheimer antigen (predicted) (Falz_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_61557102-S	ILMN_292006	MESDC1	NM_001013149.1	NM_001013149.1		308795	61557102	NM_001013149.1	Mesdc1	NP_001013167.1	ILMN_1360401	0003120215	S	1650	GTGTGCTGACTGCAGGATTACCCCTACACACTCCAGACCCGCAACTCAGT	1	-	140157678-140157727	1q31	Rattus norvegicus mesoderm development candidate 1 (Mesdc1), mRNA.				MGC109280	MGC109280
Rattus norvegicus	RefSeq	GI_38454303-S	ILMN_277056	USP48	NM_198785.1	NM_198785.1		362636	38454303	NM_198785.1	Usp48	NP_942080.1	ILMN_1351366	0002100504	S	5476	GCACACTAGACAAGCGTTCTGCACACTGACCCATGTCCCCAGCTCTACCC	5	+	156418053-156418102	5q36	Rattus norvegicus ubiquitin specific protease 48 (Usp48), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	Usp31; synUSP	Usp31; synUSP
Rattus norvegicus	RefSeq	GI_62665964-S	ILMN_271022	AMID_PREDICTED	XM_001056179.1	XM_001056179.1		361843	109510102	XM_001056179.1	Amid_predicted	XP_001056179.1	ILMN_1361070	0004730075	S	1094	GCAGGGACCTTCTCATCTCCACAAGCTGGAAAACCATGCGGCAATCTCCA				20q11	PREDICTED: Rattus norvegicus apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death (predicted) (Amid_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27695748-S	ILMN_67927	RGD1560826_PREDICTED	XM_227659.3	XM_227659.3		295423	109465516	XM_227659.3	RGD1560826_predicted	XP_227659.1	ILMN_2040770	0002640484	S	788	AGTGTACCCGTTGTGGATCTGACATGCTGCCTTGAGAAACCTGCCAAGTG	2	+	219334965-219335014	2q42	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560826_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644279-S	ILMN_67927	RGD1560826_PREDICTED	XM_227659.3	XM_227659.3		295423	109465516	XM_227659.3	RGD1560826_predicted	XP_227659.1	ILMN_1357620	0005690014	S	747	GAGGGAAGTTCACTAGCACGGCATTCGGTGTTCCTACCCCCAGTGTACCC	2	+	219334924-219334973	2q42	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560826_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527420-S	ILMN_284410	SH3GLB2	NM_001009692.1	NM_001009692.1		311848	57527420	NM_001009692.1	Sh3glb2	NP_001009692.1	ILMN_1357849	0007100707	S	1596	CCATCTGAGGAAGTTGAGGGTTCAGCAGCAAACAGGCAGGGCTGGGACAG	3	-	9389004-9389053	3p12	Rattus norvegicus SH3-domain GRB2-like endophilin B2 (Sh3glb2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105723	MGC105723
Rattus norvegicus	RefSeq	GI_62649144-S	ILMN_301771	RGD1563046_PREDICTED	XR_008686.1	XR_008686.1		500485	109476685	XR_008686.1	RGD1563046_predicted		ILMN_1350463	0004070372	S	715	TGTCAGTGCATGGTGAAGACGGAACATGGAGAGGAGCGTCGCCTACTGGC				5q31	PREDICTED: Rattus norvegicus similar to cerberus-like (predicted) (RGD1563046_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655716-S	ILMN_283484	TCFAP4_PREDICTED	XM_001079253.1	XM_001079253.1		360482	109489725	XM_001079253.1	Tcfap4_predicted	XP_001079253.1	ILMN_1372806	0006550019	S	1790	AAGCACTTACATGGGTTGGGGGTCAGGCTGGGTTGGGGCTTTCTGGGGAT				10q12	PREDICTED: Rattus norvegicus transcription factor AP4 (predicted) (Tcfap4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54262159-S	ILMN_297546	CD63	NM_017125.2	NM_017125.2		29186	54262159	NM_017125.2	Cd63	NP_058821.1	ILMN_1355682	0000450397	S	752	GTATCCGGAGTGGCTACGAAGTAATGTAGGGTGGGGGCGTGTCTGAGCTC	7	+	2211263-2211312	7q11	Rattus norvegicus CD63 antigen (Cd63), mRNA.	A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of endocytosis [goid 45807] [evidence IMP]		MGC72893	MGC72893
Rattus norvegicus	RefSeq	GI_62717832	ILMN_50789	LOC501233	XM_576654.1	XM_576654.1		501233	62717832	XM_576654.1	LOC501233	XP_576654.1	ILMN_1650810	0002630497	S	148	CTCGGATCTCGGAGTCGGGGAATGTCTGAGATGGAAATGGATGCTGCCAA				1q21	PREDICTED: Rattus norvegicus similar to LRRGT00080 (LOC501233), mRNA.					
Rattus norvegicus	RefSeq	GI_6981715-S	ILMN_290124	MAP3K12	NM_013055.1	NM_013055.1		25579	6981715	NM_013055.1	Map3k12	NP_037187.1	ILMN_1373917	0002450576	S	3636	GGCTGAAGAACTGGGTGCTGGTTAAGTCCCCGCTGTTATCTGGTGCCTGG				7q36	Rattus norvegicus mitogen activated protein kinase kinase kinase 12 (Map3k12), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]; A cell projection part that is part of an axon [goid 33267] [evidence ISS]	The modification of histones by addition of phosphate groups [goid 16572] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation and activation of MAP kinase kinases; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases [goid 4709] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]	PK; DLK; MUK; Zpk	PK; DLK; MUK; Zpk
Rattus norvegicus	RefSeq	GI_62660345-S	ILMN_64033	LOC498351	XM_573584.1	XM_573584.1		498351	62660345	XM_573584.1	LOC498351	XP_573584.1	ILMN_1355550	0002690377	S	1460	CAACCAAAGGAACAAGGCTGTTTCCACCTTCTCCTACTCATCCATGTCCT				14p11	PREDICTED: Rattus norvegicus similar to signal recognition particle,72 kDa subunit (LOC498351), mRNA.	A complex of protein and RNA which facilitates translocation of proteins across membranes [goid 48500] [evidence IEA]	The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane [goid 6614] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with 7S RNA, the RNA component of the signal recognition particle (SRP) [goid 8312] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.24687	ILMN_161444	LOC307393	Rn.24687		Rn.24687		62664516	XM_225887	LOC307393		ILMN_1530457	0000870373	S	1876	CTTAACATGAATGACTTCACTTTCCATGTACAGAACTGCATTTTTTCTCA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA D430044G18 (predicted) (LOC307393),					
Rattus norvegicus	RefSeq	GI_34874964-S	ILMN_67702	LOC501993	XM_344391.1	XM_344391.1		501993	34874964	XM_344391.1	LOC501993	XP_344392.1	ILMN_1362754	0002680324	S	351	CCCACCAAACTGAATGTTTGTGTACAGGCTGCAGGGGTGAAGGGGCAGCA					PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain precursor V-J-C region - rat  (fragment) (LOC501993), mRNA.					
Rattus norvegicus	RefSeq	GI_34859868-A	ILMN_65314	COL11A1	XM_342325.3	XM_342325.3		25654	109465413	XM_342325.3	Col11a1	XP_342326.2	ILMN_1376908	0004230433	S	6049	GGCTGAGATGGCAACAGGGCTCATTCTTGATTCTCAACCCTCATCTCTCC	2	+	210192076-210192125	2q41	PREDICTED: Rattus norvegicus procollagen, type XI, alpha 1 (Col11a1), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans [goid 6029] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence TAS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644223-I	ILMN_65314	COL11A1	XM_342325.3	XM_342325.3		25654	109465413	XM_342325.3	Col11a1	XP_342326.2	ILMN_1375797	0001240176	S	3960	CCCCGAGGACAGCAGGGAATGTTTGGACAAAAAGGTGATGAGGGTGCACG	2	+	210147742-210147791	2q41	PREDICTED: Rattus norvegicus procollagen, type XI, alpha 1 (Col11a1), mRNA.	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence ISS]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence ISS]; The developmental process by which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 3007] [evidence ISS]; The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans [goid 6029] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence TAS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form [goid 48705] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process by which the anatomical structures of cardiac ventricle muscle is generated and organized. Morphogenesis pertains to the creation of form [goid 55010] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667351-S	ILMN_57799	SMARCA1_PREDICTED	XM_229124.4	XM_229124.4		317575	109511190	XM_229124.4	Smarca1_predicted	XP_229124.3	ILMN_1358824	0001940546	S	3525	AGCCTGTGCTGAGGTTTTAGCTTTTCTATGTTTTCTATGCCGCTGCTTTG	X	-	134177442-134177491	Xq35	PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (predicted) (Smarca1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665431-S	ILMN_286103	NUP133_PREDICTED	XM_001053507.1	XM_001053507.1		292085	109509037	XM_001053507.1	Nup133_predicted	XP_001053507.1	ILMN_1362426	0004280136	S	340	GTGTTTGGATCATCGCTCCCTGTTAAGATCATGGAAGCCCTGGCGATGGC					PREDICTED: Rattus norvegicus nucleoporin 133 (predicted) (Nup133_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665429-S	ILMN_286103	NUP133_PREDICTED	XM_001053507.1	XM_001053507.1		292085	109509037	XM_001053507.1	Nup133_predicted	XP_001053507.1	ILMN_1371743	0006980739	S	3132	CGAGAGACAGCTGAGTCTTAGTGCAATGCCCGTGTTGACTGCACCACAGC					PREDICTED: Rattus norvegicus nucleoporin 133 (predicted) (Nup133_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34854827-S	ILMN_273747	RGD1563584_PREDICTED	XR_008263.1	XR_008263.1		366048	109469914	XR_008263.1	RGD1563584_predicted		ILMN_1370698	0006370403	S	356	GGAGAGATGTTAGTGGTGGGCTATGAGGACAGCAACGGTTGCATCAGCTG				3q12	PREDICTED: Rattus norvegicus similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) (RGD1563584_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577222-S	ILMN_298277	OLR371	NM_001000258.1	NM_001000258.1		293803	47577222	NM_001000258.1	Olr371	NP_001000258.1	ILMN_1358739	0005420039	S	468	CCATGTTGCCTTCACATTCCACCTATCCTTTTGCCATTCCAACAGAGTGA	1	+	216693880-216693929	1q43	Rattus norvegicus olfactory receptor 371 (Olr371), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr371	Olr371
Rattus norvegicus	RefSeq	GI_13592020-S	ILMN_278143	PDE2A	NM_031079.1	NM_031079.1		81743	13592020	NM_031079.1	Pde2a	NP_112341.1	ILMN_1372916	0006940176	S	3552	AGTCTCCGTCATTCTGTGGAGTCCGTGAGTGGTTGTGGCATGCTCTGCCA	1	+	159013401-159013450	1q32	Rattus norvegicus phosphodiesterase 2A, cGMP-stimulated (Pde2a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate; catalytic activity is increased in the presence of cGMP [goid 4118] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pde2a2; Pde2	Pde2a2; Pde2
Rattus norvegicus	RefSeq	GI_62651065-S	ILMN_68296	RGD1307597_PREDICTED	XM_234415.4	XM_234415.4		299197	109478511	XM_234415.4	RGD1307597_predicted	XP_234415.2	ILMN_1353333	0001090551	S	3034	CATCAGTGAGGGTTGCGAGGGCTTTGGCATGCTCTGACCGTTCCTCTGTC	6	-	108965854-108965867:108965868-108965903	6q31	PREDICTED: Rattus norvegicus similar to mKIAA0317 protein (predicted) (RGD1307597_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576334-S	ILMN_267532	OLR1529	NM_001001100.1	NM_001001100.1		405996	47576334	NM_001001100.1	Olr1529	NP_001001100.1	ILMN_1365975	0002900072	S	314	TCAGTGCAACTACTGAAATTTTTCTTCTGGTAGCCATGGCCTATGACCGC	11	+	41786771-41786820	11q12	Rattus norvegicus olfactory receptor 1529 (Olr1529), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1529	Olr1529
Rattus norvegicus	RefSeq	GI_62644305-S	ILMN_69322	LOC499707	XM_575035.1	XM_575035.1		499707	62644305	XM_575035.1	LOC499707	XP_575035.1	ILMN_1359109	0002760433	S	483	GGATCCTCCAGACTGATTTCCAGAATGGTTGTACCATCTGCAACCCCACC					PREDICTED: Rattus norvegicus similar to ORF7 (LOC499707), mRNA.					
Rattus norvegicus	RefSeq	GI_62667454-A	ILMN_264046	IKBKG	NM_199103.1	NM_199103.1		309295	40018573	NM_199103.1	Ikbkg	NP_954534.1	ILMN_1376533	0000130717	S	1030	GCCAGGATTGAGGATATGAGGAAGCGGCATGTAGAGACTTCCCAGCCCCC	X	+	160420166-160420190	Xq37	Rattus norvegicus inhibitor of kappaB kinase gamma (Ikbkg), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A protein serine/threonine kinase that phosphorylates IkappaB, thereby targeting this for proteasomal degradation and allowing the nuclear translocation of kB. Composed of alpha, beta and gamma subunits, the latter not having kinase activity but presumed to play a regulatory role [goid 8385] [evidence IPI]; A protein serine/threonine kinase that phosphorylates IkappaB, thereby targeting this for proteasomal degradation and allowing the nuclear translocation of kB. Composed of alpha, beta and gamma subunits, the latter not having kinase activity but presumed to play a regulatory role [goid 8385] [evidence TAS]	The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1782] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The stimulation of the activity of NF-kappaB-inducing kinase through phosphorylation at specific residues [goid 7250] [evidence IEA]; The directed movement of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane [goid 42348] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence TAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	Nemo	Nemo
Rattus norvegicus	RefSeq	GI_62664257-S	ILMN_53338	LOC498847	XM_574131.1	XM_574131.1		498847	62664257	XM_574131.1	LOC498847	XP_574131.1	ILMN_1374797	0002470711	S	2385	GAAACGCAAGAAGACCCCGAGCTGCCTGAGGTGAGTCTATTTCTTTGAGC				18p11	PREDICTED: Rattus norvegicus similar to protocadherin gamma A3 (LOC498847), mRNA.					
Rattus norvegicus	RefSeq	GI_38454267-S	ILMN_280701	BICD2	NM_001033674.1	NM_001033674.1		306809	76008362	NM_001033674.1	Bicd2	NP_001028846.1	ILMN_1362693	0001580047	S	6219	TTGATGGCGGACCGTCTCCACAGCCAGCACACATAGGAAAAGTGGGCCTG	17	-	21215032-21215081	17p14	Rattus norvegicus bicaudal D homolog 2 (Drosophila) (Bicd2), transcript variant 1, mRNA.					
Rattus norvegicus	RefSeq	GI_14091747-S	ILMN_277580	SLC1A6	NM_032065.1	NM_032065.1		84012	14091747	NM_032065.1	Slc1a6	NP_114454.1	ILMN_1351486	0003120195	S	1773	TAAGTCACTCATGGCACAAGCCAAGGGGGCATCAAGGGGTCGGGGAGGTA	7	-	12393411-12393435:12393436-12393460	7q11	Rattus norvegicus solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 (Slc1a6), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of dicarboxylic acids into, out of, within or between cells [goid 6835] [evidence IEA]; The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of, within or between cells [goid 15813] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]	Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence TAS]; Catalysis of the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid [goid 5313] [evidence ISS]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in) [goid 17153] [evidence IEA]	MGC114297; EAAT4	MGC114297; EAAT4
Rattus norvegicus	RefSeq	GI_62644717-S	ILMN_68362	SSNA1_PREDICTED	XM_231052.2	XM_231052.2		311802	62644717	XM_231052.2	Ssna1_predicted	XP_231052.2	ILMN_1373388	0002680064	S	2	GCCTCACGAGCTCCGCATCGAAGAGTTGTGTCAGAAACGAGAGGAGCTGT				3p13	PREDICTED: Rattus norvegicus Sjogren's syndrome nuclear autoantigen 1 (predicted) (Ssna1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658273-S	ILMN_299605	RGD1560337_PREDICTED	XR_008268.1	XR_008268.1		501788	109494808	XR_008268.1	RGD1560337_predicted		ILMN_1349685	0005700142	S	579	AGTGAATACCAGTCCGGCTGCCCACATCACAACCCAGGCTCACTCATATG				11q23	PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (predicted) (RGD1560337_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090252-S	ILMN_269644	STARD6	NM_001007627.1	NM_001007627.1		291527	56090252	NM_001007627.1	Stard6	NP_001007628.1	ILMN_1351217	0001940575	S	828	GAAAGACGGCCTAAAGATACACAAAGCCCCAATCCCAGCACTTCGTTCAC	18	+	67202627-67202676	18q12.1	Rattus norvegicus StAR-related lipid transfer (START) domain containing 6 (Stard6), mRNA.		The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IEA]	Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence IEA]; Enables the directed movement of cholesterol into, out of, within or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 17127] [evidence IEA]	MGC93858	MGC93858
Rattus norvegicus	RefSeq	GI_62659540-A	ILMN_269390	ACBD6	NM_001011906.1	NM_001011906.1		289125	58865389	NM_001011906.1	Acbd6	NP_001011906.1	ILMN_1376438	0002030180	S	1181	GCGCTTCATTATGCTGCTGCCTGCGAGTTTTCGGACATTGTGGAGCTGCT	13	+	70640162-70640174:70654686-70654722	13q21	Rattus norvegicus acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA.			Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655354-S	ILMN_64984	PDE6D_PREDICTED	XM_343613.3	XM_343613.3		363272	109486310	XM_343613.3	Pde6d_predicted	XP_343614.1	ILMN_1360087	0001570687	S	873	CCTTCCTGGTGCAAACATGGGAACAAACCCCGTACTCGGAGCCACACTGC	9	-	85308116-85308165	9q35	PREDICTED: Rattus norvegicus phosphodiesterase 6D, cGMP-specific, rod, delta (predicted) (Pde6d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661498-S	ILMN_266986	RGD1309307_PREDICTED	XM_001061937.1	XM_001061937.1		361044	109502456	XM_001061937.1	RGD1309307_predicted	XP_001061937.1	ILMN_1370543	0001690563	S	842	CACTGGCCACGGGCTACCAGTATTCCTTCCCAGAGTTAGGAGCTGCCTTA				15p13	PREDICTED: Rattus norvegicus similar to HCDI protein (predicted) (RGD1309307_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647945-A	ILMN_301393	CLEC4A3	NM_001005891.1	NM_001005891.1		362431	54312111	NM_001005891.1	Clec4a3	NP_001005891.1	ILMN_1376838	0000460711	S	414	ATCTTGGATGGAGAGTGAGGAGAAGTGCTCCGGCATAGGTGCTCATCTGG	4	+	159471029-159471078	4q42	Rattus norvegicus C-type lectin domain family 4, member a3 (Clec4a3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655562-S	ILMN_276969	CLUL1	NM_001033071.1	NM_001033071.1		367345	74271920	NM_001033071.1	Clul1	NP_001028243.1	ILMN_1367636	0005080059	S	1179	GCAGTTTGGATGGGTGTCTCAACTGGCAAGCCATAACCCAGTGACTGAGG	9	-	112632965-112633014	9q38	Rattus norvegicus clusterin-like 1 (retinal) (Clul1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62661581-S	ILMN_50388	LOC498527	XM_579832.1	XM_579832.1		498527	62661581	XM_579832.1	LOC498527	XP_579832.1	ILMN_1350460	0005670341	S	0	ATGGGGCCCCTCACTCGATACAGTCATTCTGGAAGACTAGAGGATCCTCC					PREDICTED: Rattus norvegicus LOC498527 (LOC498527), mRNA.					
Rattus norvegicus	RefSeq	GI_58865635-A	ILMN_281607	ART3	NM_001012034.1	NM_001012034.1		305235	58865635	NM_001012034.1	Art3	NP_001012034.1	ILMN_1376636	0006760133	S	1146	GGCCATCGGCTCCTTCCGTCAGACACAGCATCCACCATTTTACTCATCGC	14	-	17198554-17198603	14p22	Rattus norvegicus ADP-ribosyltransferase 3 (Art3), mRNA.		The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]; The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]	Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648466-S	ILMN_70286	LOC502929	XM_578431.1	XM_578431.1		502929	62648466	XM_578431.1	LOC502929	XP_578431.1	ILMN_1369525	0006020041	S	467	AAGATGTGAAGTGACATGGTCAGGGTGCTCCAAGTTCAAGGTTCCCCGGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330407D12 (LOC502929), mRNA.					
Rattus norvegicus	RefSeq	GI_62654190-S	ILMN_299421	EPHB1	XM_217250.3	XM_217250.3		24338	62654190	XM_217250.3	Ephb1	XP_217250.1	ILMN_1367637	0004590358	S	4400	TCTGGAGAATGTTCTTGCACATCCCCGGAACCAGCGATTTGAGAGGCGGC	8	-	106872116-106872165	8q32	PREDICTED: Rattus norvegicus Eph receptor B1 (Ephb1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IPI]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions [goid 21545] [evidence ISS]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence ISS]; Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region [goid 21952] [evidence ISS]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA];  [goid 8046] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758539-S	ILMN_295834	CLASP2	NM_053722.1	NM_053722.1		114514	16758539	NM_053722.1	Clasp2	NP_446174.1	ILMN_1349509	0000050075	S	5337	TGTAAAGGGCGTGAGCGGAGAGAACTGGATGGGTGATTGGTCGGAGAAGC	8	+	118562471-118562520	8q32	Rattus norvegicus CLIP associating protein 2 (Clasp2), mRNA.	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules [goid 777] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence ISS]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence ISS]; Any microtubule in the cytoplasm of a cell [goid 5881] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol [goid 7026] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule [goid 31110] [evidence ISS]; Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule [goid 31110] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656829-S	ILMN_263511	LPO_PREDICTED	XM_001081174.1	XM_001081174.1		287610	109491603	XM_001081174.1	Lpo_predicted	XP_001081174.1	ILMN_1362386	0005700605	S	2137	TTCTCCCGCCTCGTCTGCGACAACACTGGCATCACCAAGGTCCCACTGAA				10q26	PREDICTED: Rattus norvegicus lactoperoxidase (predicted) (Lpo_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662508-S	ILMN_55578	LOC498617	XM_573895.1	XM_573895.1		498617	62662508	XM_573895.1	LOC498617	XP_573895.1	ILMN_1372425	0002320687	S	109	GAGGCAGTTCTCACAGTGATTGCTCTTCACCACAAGAAGATGGGCAGGTC					PREDICTED: Rattus norvegicus similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3-like (LOC498617), mRNA.					
Rattus norvegicus	RefSeq	GI_62666184-S	ILMN_62180	LOC502442	XM_577923.1	XM_577923.1		502442	62666184	XM_577923.1	LOC502442	XP_577923.1	ILMN_1362412	0005270609	S	440	CTTTGCTACCAGAGAGCAGCTGGGCCAAAGATGTGGCAACTGGAGGTCTC					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502442), mRNA.					
Rattus norvegicus	RefSeq	GI_47575869-S	ILMN_274681	HFE	NM_053301.2	NM_053301.2		29199	47575869	NM_053301.2	Hfe	NP_445753.1	ILMN_1350269	0005080372	S	2974	GTATAGTCCTGTCCCCATCCTAAGAGCCTAGCAGGCACAGAGCTCTTTCC				Xq21	Rattus norvegicus hemochromatosis (Hfe), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The portion of the plasma membrane surrounding a microvillus [goid 31528] [evidence IDA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence TAS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions [goid 10106] [evidence IEP]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone [goid 42446] [evidence ISS]; The regulation of the levels, transport, and metabolism of iron ions [goid 55072] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62642585-S	ILMN_49674	LOC499387	XM_579958.1	XM_579958.1		499387	62642585	XM_579958.1	LOC499387	XP_579958.1	ILMN_1372899	0001990341	S	694	CCACTTTCAAAGGACCTTTACTGTCACAGAACCGGCGCTATTTCAGTGCC					PREDICTED: Rattus norvegicus LOC499387 (LOC499387), mRNA.					
Rattus norvegicus	RefSeq	GI_62663322-S	ILMN_289483	RGD1307284_PREDICTED	XR_007501.1	XR_007501.1		306811	109505554	XR_007501.1	RGD1307284_predicted		ILMN_1359174	0002970128	S	6865	CAGCCCTGCCTGTGCCCACACCAGATCCTGAGAGTGAAAAGCCCGACTGA				17p14	PREDICTED: Rattus norvegicus similar to protein kinase, lysine deficient 1; kinase deficient protein (predicted) (RGD1307284_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_18266693-S	ILMN_284102	PDE11A	NM_080893.1	NM_080893.1		140928	18266693	NM_080893.1	Pde11a	NP_543169.1	ILMN_1354921	0002100164	S	3726	GCAGAGGAACCCTGTGACCAGTCGTGGAATAGTTTGAGGTGAAGGGGATG	3	-	58659963-58660012	3q23	Rattus norvegicus phosphodiesterase 11A (Pde11a), transcript variant 4, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. Complexes I, III and IV can transport protons if embedded in an oriented membrane, such as an intact mitochondrial inner membrane [goid 5746] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]	Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate [goid 4112] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Pde11A3; Pde11A4; Pde11A2	Pde11A3; Pde11A4; Pde11A2
Rattus norvegicus	RefSeq	GI_62647064-S	ILMN_48786	LOC312192	XM_231564.3	XM_231564.3		312192	62647064	XM_231564.3	LOC312192	XP_231564.3	ILMN_1369842	0002340400	S	2781	AGGCTGGGCAGTGACGAGCTCCCCAGAGTACAGCTGACCCTTGCATCTTT				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4631427C17 (LOC312192), mRNA.					
Rattus norvegicus	RefSeq	GI_62652218-S	ILMN_58125	LOC500842	XM_576233.1	XM_576233.1		500842	62652218	XM_576233.1	LOC500842	XP_576233.1	ILMN_2039362	0004010474	S	1	AATCAGCCTAGGGATAAGCGTGCATTTCAGAACAAAAGCCAGAGGGCCGA					PREDICTED: Rattus norvegicus LOC500842 (LOC500842), mRNA.					
Rattus norvegicus	RefSeq	GI_12621103-S	ILMN_56453	STX12	NM_022939.2	NM_022939.2		65033	77695929	NM_022939.2	Stx12	NP_075228.2	ILMN_1352795	0005890113	S	557	AGTGGAACCAGATGCAGAGCCAGGAGGAAGAGGCGGCCATCACTGAGCAA	5	+	152283781-152283830	5q36	Rattus norvegicus syntaxin 12 (Stx12), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis [goid 45335] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle [goid 33344] [evidence ISS]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [evidence ISS]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_6978584-S	ILMN_288851	DDR1	NM_013137.1	NM_013137.1		25678	6978584	NM_013137.1	Ddr1	NP_037269.1	ILMN_1352338	0006520463	S	2509	TGCAGGTCACAGCCCTTCGGGCAACTCACAGACGAGCAGGTCATCGAGAA	20	+	3214268-3214317	20p12	Rattus norvegicus discoidin domain receptor tyrosine kinase 1 (Ddr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whose specific outcome is the progression of the ear over time, from its formation to the mature structure. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 43583] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	PTK3D; Cak; Drd1	PTK3D; Cak; Drd1
Rattus norvegicus	RefSeq	GI_62642988-S	ILMN_48854	LOC365675	XM_577989.1	XM_577989.1		365675	62642988	XM_577989.1	LOC365675	XP_577989.1	ILMN_1358062	0006370050	S	34	CCATCGCTCCCAAGGTTGAACTCTCTGACACTACAGAGTATGGACGGGGC					PREDICTED: Rattus norvegicus similar to ribosomal protein S27a (LOC365675), mRNA.					
Rattus norvegicus	RefSeq	GI_11067408-S	ILMN_289426	NEGR1	NM_021682.1	NM_021682.1		59318	11067408	NM_021682.1	Negr1	NP_067714.1	ILMN_1366196	0005050047	S	1421	CAACTTTTCAAGAGCATTCAGTCGTGGTCTGCTAGGCTTCCGGCTGTAGT	2	+	255425991-255426040	2q45	Rattus norvegicus neuronal growth regulator 1 (Negr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648528-S	ILMN_51154	SLCO5A1_PREDICTED	XM_232599.3	XM_232599.3		312907	62648528	XM_232599.3	Slco5a1_predicted	XP_232599.3	ILMN_1351963	0001090022	S	3472	GCTAGGTTCACTTAATGTTCACAGTCCCTTTGGGTAGAAGCCCGAGGTCC				5q11	PREDICTED: Rattus norvegicus solute carrier organic anion transporter family, member 5A1 (predicted) (Slco5a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758889-S	ILMN_290791	MYO1B	NM_053986.1	NM_053986.1		117057	16758889	NM_053986.1	Myo1b	NP_446438.1	ILMN_1373747	0002680707	S	3489	CGGGAGCGTGCCAACCTGCAAACGAAAGAACAACAGGCTTCTTGAAGTCG	9	+	46917049-46917098	9q22	Rattus norvegicus myosin Ib (Myo1b), mRNA.	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence TAS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	Myr1	Myr1
Rattus norvegicus	RefSeq	GI_16758265-S	ILMN_272626	NME3	NM_053507.1	NM_053507.1		85269	16758265	NM_053507.1	Nme3	NP_445959.1	ILMN_1371682	0003610088	S	471	TGTGCTGGGAGGACAGCGCGGGACACTGGCTATATGAGTAGACGCTAAAA	10	+	14146270-14146310:14146311-14146319	10q12	Rattus norvegicus non-metastatic cells 3, protein expressed in (Nme3), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate [goid 6183] [evidence IEA]; The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate [goid 6228] [evidence IEA]; The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate [goid 6241] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence ISS]; Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate [goid 4550] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	NM23-dr	NM23-dr
Rattus norvegicus	RefSeq	GI_62648546-S	ILMN_294157	LOC500392	NM_001024340.1	NM_001024340.1		500392	66730468	NM_001024340.1	LOC500392	NP_001019511.1	ILMN_1349039	0002350575	S	2946	GTGGTCTAGTCACTTTCTTCCCCACGGTGTATTGGTGTACTGGCCATCAG	5	-	8842609-8842658	5q11	Rattus norvegicus similar to hypothetical protein FLJ25692 (LOC500392), mRNA.			Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34857535-S	ILMN_53635	LOC310510	XM_227251.2	XM_227251.2		310510	34857535	XM_227251.2	LOC310510	XP_227251.2	ILMN_1357562	0002810082	S	763	TGGAATGGATCGAGAACAATGGCAAAGGGAATGAAGCTCTGGAGAAGCGG					PREDICTED: Rattus norvegicus similar to phosphoserine aminotransferase 1 (LOC310510), mRNA.					
Rattus norvegicus	RefSeq	GI_62646581-S	ILMN_263140	LOC502958	XR_007277.1	XR_007277.1		502958	109476705	XR_007277.1	LOC502958		ILMN_1365455	0006760092	S	156	GCTTCAGCGACAAAACCTCAAGAACAAGAGAGCCTTCACACTCCTGGCTC				5q32	PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (LOC502958), mRNA.					
Rattus norvegicus	RefSeq	GI_6981011-S	ILMN_277488	HBP1	NM_013221.1	NM_013221.1		27080	6981011	NM_013221.1	Hbp1	NP_037353.1	ILMN_1366410	0003710484	S	2436	CTACAGTAGAGCAAGTCCTTCGGCAGCCCTGCTGCTTTCGCTCTGCGCTA	6	-	50201446-50201495	6q16	Rattus norvegicus HMG-box transcription factor 1 (Hbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IC ]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence NAS]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence NAS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IDA]	HMGB1	HMGB1
Rattus norvegicus	RefSeq	GI_62645269-S	ILMN_50431	LOC366074	XM_345369.2	XM_345369.2		366074	62645269	XM_345369.2	LOC366074	XP_345370.2	ILMN_1368537	0004810154	S	367	TACGTAGAGTACCCAGGAACCCTCGGGGCAGAGTCGTCACCCGCATCCTT				3q22	PREDICTED: Rattus norvegicus similar to NADH oxidoreductase (LOC366074), mRNA.					
Rattus norvegicus	RefSeq	GI_62644905-S	ILMN_54984	PRRX2_PREDICTED	XM_238327.4	XM_238327.4		113931	109468000	XM_238327.4	Prrx2_predicted	XP_238327.3	ILMN_1358593	0006400017	S	1112	TTCCTGGCCCAATGGCAGACCGCAGTAAAGGAAGTAGCCTTGTCCGTCCC	3	+	9936533-9936582	3p12	PREDICTED: Rattus norvegicus paired related homeobox 2 (predicted) (Prrx2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664615-S	ILMN_50740	LOC307332	XM_225841.2	XM_225841.2		307332	62664615	XM_225841.2	LOC307332	XP_225841.2	ILMN_1359704	0003390086	S	1741	CCTTCTTTCCCGTTTGATGTTCCCACAGGTGACGTCTTTGAGGACTGTTA				18q12.1	PREDICTED: Rattus norvegicus similar to goliath-related E3 ubiquitin ligase 4 (LOC307332), mRNA.					
Rattus norvegicus	RefSeq	GI_47577858-S	ILMN_298301	OLR1192	NM_001000859.1	NM_001000859.1		405152	47577858	NM_001000859.1	Olr1192	NP_001000859.1	ILMN_1374537	0005050593	S	467	CTCTGATCCAGAGTCTATTGATGCTGCGGCTGTCCTTCTGTACCAACCAA	8	+	19301247-19301296	8q13	Rattus norvegicus olfactory receptor 1192 (Olr1192), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1192	Olr1192
Rattus norvegicus	RefSeq	GI_62665521-S	ILMN_289164	RGD1305883_PREDICTED	XM_001055579.1	XM_001055579.1		307949	109509073	XM_001055579.1	RGD1305883_predicted	XP_001055579.1	ILMN_1349691	0001850465	S	3800	CACGCTTGACGCCTTCTCCATAAGCAACTACAGGAGGCTCGGCACCCACT				19q12	PREDICTED: Rattus norvegicus similar to cDNA sequence AF096286; pecanex 1 (predicted) (RGD1305883_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665464-S	ILMN_289164	RGD1305883_PREDICTED	XM_001055579.1	XM_001055579.1		307949	109509073	XM_001055579.1	RGD1305883_predicted	XP_001055579.1	ILMN_1354545	0005550079	S	6365	CCAGTCATCCAGTAGCGTCAACATTGTGATGGGTCCCTCCGCTAGGGCTG				19q12	PREDICTED: Rattus norvegicus similar to cDNA sequence AF096286; pecanex 1 (predicted) (RGD1305883_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646004-S	ILMN_63634	LOC499905	XM_575251.1	XM_575251.1		499905	62646004	XM_575251.1	LOC499905	XP_575251.1	ILMN_2039919	0006040224	S	454	AGTGAGGATTTCCGTCCAATGAGTAGAATTTCCCTGGTGTCCCTTGTCAC					PREDICTED: Rattus norvegicus similar to suppressor of initiator codon mutations, related sequence 1 (LOC499905), mRNA.					
Rattus norvegicus	RefSeq	GI_47576370-S	ILMN_274590	OLR154	NM_001000547.1	NM_001000547.1		365333	47576370	NM_001000547.1	Olr154	NP_001000547.1	ILMN_1374073	0000360369	S	692	TGCTGCGACTGCCCTCAAAGGATGCCCAGTTCCGAGCATTCAGCACGTGT	1	+	162225998-162226047	1q32	Rattus norvegicus olfactory receptor 154 (Olr154), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr154	Olr154
Rattus norvegicus	RefSeq	GI_11120689-S	ILMN_278875	NR1H4	NM_021745.1	NM_021745.1		60351	11120689	NM_021745.1	Nr1h4	NP_068513.1	ILMN_1367313	0005270731	S	1559	GTGAGATCTGGGATGTGCAGTGAAGGACACGGGGAGAGGCTAGCTCCTTG	7	-	26190219-26190246:26190247-26190268	7q13	Rattus norvegicus nuclear receptor subfamily 1, group H, member 4 (Nr1h4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IMP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates [goid 6109] [evidence IMP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48565] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IDA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IMP]; Interacting selectively with bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 32052] [evidence IDA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Fxr; MGC94878	Fxr; MGC94878
Rattus norvegicus	RefSeq	GI_55741771-S	ILMN_292356	SDAD1	NM_001006958.1	NM_001006958.1		289504	55741771	NM_001006958.1	Sdad1	NP_001006959.1	ILMN_1368182	0002690114	S	1906	GACTAGCAACCGCTATGGCTGGAAGGACAGACCGAAAGGAGTTTGTGAGG	14	+	17324893-17324909:17325880-17325912	14p22	Rattus norvegicus SDA1 domain containing 1 (Sdad1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis [goid 42254] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94390	MGC94390
Rattus norvegicus	RefSeq	GI_62639106	ILMN_270144	FOSB	XM_001075659.1	XM_001075659.1		308411	109461362	XM_001075659.1	Fosb	XP_001075659.1	ILMN_1650969	0005130324	S	1422	AGCCGAGACGCACCCCCCAACCTGACGGCTTCTCTCTTTACACACAGTGA				1q21	PREDICTED: Rattus norvegicus FBJ osteosarcoma oncogene B (Fosb), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 32870] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718384-S	ILMN_56753	LOC367526	XM_346196.2	XM_346196.2		367526	62718384	XM_346196.2	LOC367526	XP_346197.2	ILMN_1351685	0006510008	S	829	CAAAGGTCATGCAGGGGTCATGTGATGGCCTCCAGCACCCTGAAAGCTGC					PREDICTED: Rattus norvegicus hypothetical LOC367526 (LOC367526), mRNA.					
Rattus norvegicus	RefSeq	GI_27699700-S	ILMN_65797	LOC290172	XM_224133.1	XM_224133.1		290172	27699700	XM_224133.1	LOC290172	XP_224133.1	ILMN_1361490	0003940093	S	48	GCTGGGGTGAGTGGCCAGCAGGAGAGACGTGACCAGCAGCAGGTAAAACA					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 8 (LOC290172), mRNA.					
Rattus norvegicus	RefSeq	GI_62657313-S	ILMN_57143	LOC303666	XM_221094.3	XM_221094.3		303666	62657313	XM_221094.3	LOC303666	XP_221094.3	ILMN_1352621	0001400377	S	1056	CCATCTCTAATGAGTTCCGATGCCCTCTTCTGCTGTGCAGGTGTACTTGC				10q32.2	PREDICTED: Rattus norvegicus similar to dendritic cell-derived immunoglobulin(Ig)-like receptor 1, DIgR1 - mouse (LOC303666), mRNA.					
Rattus norvegicus	RefSeq	GI_47578006-S	ILMN_288932	OLR1075	NM_001000421.1	NM_001000421.1		299596	47578006	NM_001000421.1	Olr1075	NP_001000421.1	ILMN_1373655	0002100040	S	285	TGCGGGCTGCATCACCCAGATGTATTTCTTACTGCTTTTTTCAGGGCTAG	7	-	12043203-12043252	7q11	Rattus norvegicus olfactory receptor 1075 (Olr1075), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1075	Olr1075
Rattus norvegicus	RefSeq	GI_62654306-S	ILMN_50541	RGD1560754_PREDICTED	XM_578755.2	XM_578755.2		503228	109483928	XM_578755.2	RGD1560754_predicted	XP_578755.1	ILMN_1374702	0004670435	S	217	TGGTGGAGAAAGACAATGATGACGATGCAAGGGAAGAAACGGCGGATGGC	8	+	111658230-111658279	8q32	PREDICTED: Rattus norvegicus similar to IQ motif containing F1 (predicted) (RGD1560754_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31341224-S	ILMN_285126	ZAR1	NM_181385.2	NM_181385.2		353228	31341224	NM_181385.2	Zar1	NP_852050.1	ILMN_1367062	0004070563	S	906	ACAGTTCTGCCGCGTGTGTGAGAAGTCCTACAACCCATACCGAGTGGAGG	14	-	37599630-37599679	14p11	Rattus norvegicus zygote arrest 1 (Zar1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The production by an organism of new individuals that contain some portion of their genetic material inherited from that organism [goid 3] [evidence NAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62664493	ILMN_284368	MGC105567	NM_001024284.1	NM_001024284.1		498873	66730424	NM_001024284.1	MGC105567	NP_001019455.1	ILMN_1650368	0001340438	S	1206	ATACATGGAGAAATCTGCCTCAGCTAATGGTGGGCTCCTGGCAACAGGTC	18	+	56382584-56382633	18q12.1	Rattus norvegicus similar to cDNA sequence BC023105 (MGC105567), mRNA.					
Rattus norvegicus	RefSeq	GI_61556766-S	ILMN_283282	ART5	NM_001013039.1	NM_001013039.1		259167	61556766	NM_001013039.1	Art5	NP_001013057.1	ILMN_1362379	0002030121	S	1780	CTGATGACCTTACGATGAAGAAGGGGCTTTGAACGGCCTCAGGAAGCAGG	1	-	159577149-159577198	1q32	Rattus norvegicus ADP-ribosyltransferase 5 (Art5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The transfer, from NAD, of ADP-ribose to protein amino acids [goid 6471] [evidence IEA]	Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose [goid 3953] [evidence ISS]; Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine [goid 3956] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27708819	ILMN_276429	RGD1565844_PREDICTED	XM_001068102.1	XM_001068102.1		317486	109511710	XM_001068102.1	RGD1565844_predicted	XP_001068102.1	ILMN_1650302	0003450731	S	776	AGCAGCCACCGAGGTCATGTTGTGCCAGTCATTTGCCCGATTTGTCTCTC				Xq21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700045I19 (predicted) (RGD1565844_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649341-S	ILMN_265561	LRRC42	NM_001025653.1	NM_001025653.1		298309	71043757	NM_001025653.1	Lrrc42	NP_001020824.1	ILMN_1353898	0003360102	S	1338	GAGCAAAAAGAGAGCTTTCGAGGAGTCAGAGCAGGAGCAGAGCTCGCCGC	5	-	128322569-128322618	5q34	Rattus norvegicus leucine rich repeat containing 42 (Lrrc42), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1308919; MGC112649	RGD1308919; MGC112649
Rattus norvegicus	Unigene	Rn.12957	ILMN_160538	RN.12957	Rn.12957		Rn.12957		82519748	DV726425			ILMN_1530537	0005130075	S	551	TTTACATCTCTTTTAATCTGAACTACTGGATTGTCTGAAGAACTAAACGG					RVL18758 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62659414-S	ILMN_67266	LOC501857	XM_577272.1	XM_577272.1		501857	62659414	XM_577272.1	LOC501857	XP_577272.1	ILMN_1356535	0002640736	S	805	AGAAGCCGTTCCAAGCCCGTCTGTCAGTCCCAGGGCAAGCTGCTGGATTT					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L37a (LOC501857), mRNA.					
Rattus norvegicus	RefSeq	GI_16923959-A	ILMN_293267	PTPN12	NM_057115.1	NM_057115.1		117255	16923959	NM_057115.1	Ptpn12	NP_476456.1	ILMN_1376741	0000070619	S	1319	CCCCAGAGCAGCCCCCAACGGACCTCAACAGAAACTATGATAAGTCAGCG	4	+	9574550-9574599	4q11	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 12 (Ptpn12), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence NAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IDA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]	RKPTP; Ptpg1	RKPTP; Ptpg1
Rattus norvegicus	RefSeq	GI_9506730-S	ILMN_286134	GJB3	NM_019240.1	NM_019240.1		29585	9506730	NM_019240.1	Gjb3	NP_062113.1	ILMN_1367156	0003360400	S	649	GGCCTGAGCAAGGACAAATCGACGAAGAGCATCAGCTCCCCGAAGTCCTC	5	-	146771918-146771967	5q36	Rattus norvegicus gap junction protein, beta 3 (Gjb3), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEP]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence IEA]; The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1890] [evidence ISS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound [goid 7605] [evidence IMP]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_52353307-S	ILMN_275305	TPM3	NM_057208.2	NM_057208.2		117557	52353307	NM_057208.2	Tpm3	NP_476556.2	ILMN_1363774	0004540102	S	1006	CTGCAGCCCTCTCACCTGTATACTGACTGTAGGGTTTGCTCACCTGCATG	2	+	182323117-182323166	2q34	Rattus norvegicus tropomyosin 3, gamma (Tpm3), transcript variant 1, mRNA.	An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm [goid 2102] [evidence IEA]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IEA]; The portion of the cytoskeleton that lies just beneath the plasma membrane [goid 30863] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence IEA]; In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists [goid 32154] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Tpm5; TM30nm	Tpm5; TM30nm
Rattus norvegicus	RefSeq	GI_62654835-S	ILMN_54456	LOC501122	XM_576539.1	XM_576539.1		501122	62654835	XM_576539.1	LOC501122	XP_576539.1	ILMN_1372074	0001990408	S	2988	GCTTGCTGTGGGACCTTGGGATGCTTATACTGCCGAGCTGTCCCTGATAC				9q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430069J07 gene (LOC501122), mRNA.					
Rattus norvegicus	RefSeq	GI_62666056-S	ILMN_55974	RGD1560401_PREDICTED	XM_215383.4	XM_215383.4		294375	109509428	XM_215383.4	RGD1560401_predicted	XP_215383.4	ILMN_1352683	0006040520	S	597	CTATCCAGGGGGATGAGCCGGTGGGACACAGACCTTACCAGACTTTGCCA	20	+	22386463-22386512	20p11	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 10, University of California at Los Angeles 1 (predicted) (RGD1560401_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657128-S	ILMN_68144	LOC497673	XM_579691.1	XM_579691.1		497673	62657128	XM_579691.1	LOC497673	XP_579691.1	ILMN_1364888	0000610129	S	1450	GAAGCTGGAGAGGCTCATGGTGCGTATCGGCGTCTTCTCCGTGCTCTACA					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_172035 (LOC497673), mRNA.					
Rattus norvegicus	RefSeq	GI_62662248-S	ILMN_264654	LOC684972	XM_001061730.1	XM_001061730.1		684972	109503085	XM_001061730.1	LOC684972	XP_001061730.1	ILMN_1363154	0004850538	S	227	GCCCAAGAATCAGGGGACAGGGTGGTGAAGGAGGTCACTGAGAAGGTCAC	16	-	10006083-10006132	16p16	PREDICTED: Rattus norvegicus hypothetical protein LOC684972 (LOC684972), mRNA.					
Rattus norvegicus	RefSeq	GI_47575918-S	ILMN_263963	OLR1471	NM_001000722.1	NM_001000722.1		404974	47575918	NM_001000722.1	Olr1471	NP_001000722.1	ILMN_1375007	0006760091	S	506	GTGAGAACAACGTGATCCGCCACTTTTTCTGTGACATATCTGCATTGCTC	10	-	60317623-60317672	10q24	Rattus norvegicus olfactory receptor 1471 (Olr1471), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1471	Olr1471
Rattus norvegicus	RefSeq	GI_62642549-S	ILMN_69760	RGD1305500_PREDICTED	XM_217663.4	XM_217663.4		308004	109460309	XM_217663.4	RGD1305500_predicted	XP_217663.4	ILMN_1357698	0004920097	S	635	GAGCATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCTGAGGAGC	1	-	266764179-266764228	1q55	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13188 (predicted) (RGD1305500_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657402-S	ILMN_267876	RGD1559926_PREDICTED	XM_001081645.1	XM_001081645.1		501735	109492180	XM_001081645.1	RGD1559926_predicted	XP_001081645.1	ILMN_1358011	0001090563	S	1278	TGTTCACCGGGACTGGAGGGTCCACCTCGCCTTGGACATAGCCAACATGT				10q32.2	PREDICTED: Rattus norvegicus similar to G protein-coupled receptor 142 (predicted) (RGD1559926_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13929023-S	ILMN_275533	PPP5C	NM_031729.1	NM_031729.1		65179	13929023	NM_031729.1	Ppp5c	NP_113917.1	ILMN_1351857	0000630358	S	1678	GGCTCCTGGTCAGAGAAAGGAGGAGTTGAAATTGGGGGTAGGGCACAGCC	1	-	77345439-77345488	1q21	Rattus norvegicus protein phosphatase 5, catalytic subunit (Ppp5c), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62654707-S	ILMN_48389	TJAP1_PREDICTED	XM_236932.4	XM_236932.4		316233	109485742	XM_236932.4	Tjap1_predicted	XP_236932.4	ILMN_1374474	0005080050	S	2154	GCTCTGGTTGTTGGGGGAGGGTGTCTTGGTGCTGCTGACCTCTATTACTC	9	+	10287864-10287913	9q12	PREDICTED: Rattus norvegicus tight junction associated protein 1 (predicted) (Tjap1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663570-S	ILMN_57161	RGD1306939_PREDICTED	XM_225319.3	XM_225319.3		306934	62663570	XM_225319.3	RGD1306939_predicted	XP_225319.3	ILMN_1363107	0004850735	S	4003	GAGATTTCGTTAAAGTGGGAGGTCGTCACGGAACCGAAGTTGCCACAGCC				17p11	PREDICTED: Rattus norvegicus similar to mKIAA0386 protein (predicted) (RGD1306939_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662407-S	ILMN_268681	BPY2IP1_PREDICTED	XM_001066027.1	XM_001066027.1		290640	109503920	XM_001066027.1	Bpy2ip1_predicted	XP_001066027.1	ILMN_1363018	0003520021	S	3015	ACACCGCTTTATCTCTTGTCCGCGCCCCATCACATGCCAAGCACGGCTCT				16p14	PREDICTED: Rattus norvegicus BPY2 interacting protein 1 (predicted) (Bpy2ip1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664314-S	ILMN_60933	ARHGAP26_PREDICTED	XM_225989.4	XM_225989.4		307459	109506527	XM_225989.4	Arhgap26_predicted	XP_225989.4	ILMN_1366689	0000360471	S	2783	CAGTGGAGCTGCTGAGCTTTACGTGGTCTCCATGACAACACTGCTTCTGG	18	+	32331409-32331458	18p11	PREDICTED: Rattus norvegicus Rho GTPase activating protein 26 (predicted) (Arhgap26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638287-S	ILMN_64602	LOC502216	XM_577678.1	XM_577678.1		502216	62638287	XM_577678.1	LOC502216	XP_577678.1	ILMN_1355242	0003120154	S	1074	CCTGACTCTTCCGTGCTGCTGATTGTCCCAGCCGTCCTCAGGGGCTTAGG				1p13	PREDICTED: Rattus norvegicus similar to Retinoic acid early inducible protein 1 gamma precursor (RAE-1gamma) (LOC502216), mRNA.					
Rattus norvegicus	RefSeq	GI_62665401-S	ILMN_283043	PCOLN3_PREDICTED	XM_001079472.1	XM_001079472.1		365024	109509024	XM_001079472.1	Pcoln3_predicted	XP_001079472.1	ILMN_1349286	0006940605	S	314	GCTGTGACCATGAAGGGGGTGACCAAGAACATGGCTCAGGTGACCAAAGC				19q12	PREDICTED: Rattus norvegicus procollagen (type III) N-endopeptidase (predicted) (Pcoln3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649843-S	ILMN_280343	MGC114440	NM_001025772.1	NM_001025772.1		500566	71043799	NM_001025772.1	MGC114440	NP_001020943.1	ILMN_1370266	0003830372	S	1900	GACCGTAGCTTGCCTCAAGTGGCTAAAGGGAGAGCTGACCAAGAACGGAG	5	+	154307949-154307998	5q36	Rattus norvegicus similar to RIKEN cDNA 4930555I21 (MGC114440), mRNA.					
Rattus norvegicus	RefSeq	GI_12083582-S	ILMN_284519	PIM3	NM_022602.1	NM_022602.1		64534	12083582	NM_022602.1	Pim3	NP_072124.1	ILMN_1360660	0000780100	S	1813	CCTGCAGTAGGTCCCTAACCCCATGTTTGTGGGAGGAGGAATTTGTACAG				7q34	Rattus norvegicus pim-3 oncogene (Pim3), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The modification of histones by addition of phosphate groups [goid 16572] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652939-S	ILMN_48877	CPNE8_PREDICTED	XM_343318.2	XM_343318.2		362988	62652939	XM_343318.2	Cpne8_predicted	XP_343319.2	ILMN_1360037	0001240605	S	1872	CCCACGTCCACTGTATTCGCTTTTGTGCCATTCAGGGATTATATTGACCG				7q35	PREDICTED: Rattus norvegicus copine VIII (predicted) (Cpne8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_9507226-S	ILMN_286455	UTS2	NM_019160.1	NM_019160.1		29180	9507226	NM_019160.1	Uts2	NP_062033.1	ILMN_1372205	0006760692	S	329	GCCGTCTTTTGGCGAGAACCAGGAAACAACGTAAGCAACACGGGACTGCC	5	+	168148502-168148551	5q36	Rattus norvegicus urotensin 2 (Uts2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Ucn2	Ucn2
Rattus norvegicus	RefSeq	GI_62654886-S	ILMN_57313	LOC503249	XM_578781.1	XM_578781.1		503249	62654886	XM_578781.1	LOC503249	XP_578781.1	ILMN_1366477	0007000497	S	985	AGGTGTCAGCCACTTCCGAAGAGTGTCAAGCAGCGCCAGTCGCAAGCAGC					PREDICTED: Rattus norvegicus similar to ENSANGP00000010437 (LOC503249), mRNA.					
Rattus norvegicus	RefSeq	GI_34866424-S	ILMN_56312	LOC367170	XM_345983.1	XM_345983.1		367170	34866424	XM_345983.1	LOC367170	XP_345984.1	ILMN_1372465	0007000576	S	646	TGCAGTGGGTGGACAAACACGCCCGGCCCTTTAGCACCATCAAGCCCATG					PREDICTED: Rattus norvegicus similar to 3-5 exonuclease TREX1 (predicted) (LOC367170), mRNA.					
Rattus norvegicus	RefSeq	GI_16758091-S	ILMN_285709	PRL7D1	NM_053364.1	NM_053364.1		84377	16758091	NM_053364.1	Prl7d1	NP_445816.1	ILMN_2039693	0004570356	S	480	CTGCAACATCTAGTGACAGAACTCAGTGCTTTGCCAGGATGCCCTTATAG	17	+	43624414-43624463	17p11	Rattus norvegicus prolactin family 7, subfamily d, member 1 (Prl7d1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of angiogenesis [goid 16525] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43537] [evidence ISS]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]	Plfr; PRP	Plfr; PRP
Rattus norvegicus	RefSeq	GI_6980969-S	ILMN_284686	GOT1	NM_012571.1	NM_012571.1		24401	6980969	NM_012571.1	Got1	NP_036703.1	ILMN_1356126	0006380594	S	1607	GAGTCCTGTCCCCAAAATCAAGTTGTCTGAGGAGCCGGCTGTGACTGTGG	1	+	247347224-247347273	1q54	Rattus norvegicus glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) (Got1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]	The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle [goid 6107] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids [goid 6114] [evidence ISS]; The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6531] [evidence IDA]; The chemical reactions and pathways resulting in the formation of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6532] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6533] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid [goid 6533] [evidence ISS]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including aspartate [goid 19550] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including 2-oxoglutarate [goid 19551] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence ISS]; The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-) [goid 43648] [evidence IDA]; The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-) [goid 43648] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of fatty acid within an organism or cell [goid 55089] [evidence ISS]	Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IDA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IDA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IEA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence ISS]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IDA]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence IMP]; Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate [goid 4069] [evidence ISS]; Catalysis of the reaction: phosphatidyl-L-serine = phosphatidylethanolamine + CO2 [goid 4609] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 31406] [evidence IDA]	cytosolic aspartate aminotransferase; Aspat; Gaspat	cytosolic aspartate aminotransferase; Aspat; Gaspat
Rattus norvegicus	RefSeq	GI_12711685-S	ILMN_283443	TMEFF1	XM_001055768.1	XM_001055768.1		63845	109476483	XM_001055768.1	Tmeff1	XP_001055768.1	ILMN_1348848	0004540025	S	554	TGGGAAAGAAGGATGACGGGCTGCAGTATCGGCCAGATGTGAAAGATGCT				5q22	PREDICTED: Rattus norvegicus transmembrane protein with EGF-like and two follistatin-like domains 1 (Tmeff1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_6981243-S	ILMN_293834	MYO9B	NM_012984.1	NM_012984.1		25486	6981243	NM_012984.1	Myo9b	NP_037116.1	ILMN_1356258	0000430438	S	6920	CCCAGTCCTGGACACAAGGAAGCCCCACCGGAGGTGTGAAATAAAAGTGC	16	+	18519159-18519208	16p14	Rattus norvegicus myosin IXb (Myo9b), mRNA.	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IDA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IDA]; A two-stranded helical polymer of the protein actin [goid 31941] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6200] [evidence IDA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state [goid 7266] [evidence IPI]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IPI]; A series of molecular signals within the cell that are mediated by a member of the ARF family of proteins switching to a GTP-bound active state [goid 32011] [evidence ISS]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IDA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence IDA]; Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence IMP]; Increases the rate of GTP hydrolysis by a GTPase of the Rho family [goid 5100] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IPI]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence IMP]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP [goid 43008] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IMP]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence IDA]; Interacting selectively with ADP, adenosine 5'-diphosphate [goid 43531] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IMP]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62658263-S	ILMN_58861	PCQAP_PREDICTED	XM_341015.3	XM_341015.3		360743	109493579	XM_341015.3	Pcqap_predicted	XP_341016.3	ILMN_1371298	0004120066	S	2127	CAGGTTTGAGGAGGATGAGCGGCAGAGCATACCCAATGTGCTGCAAGGTG	11	+	85342952-85343001	11q23	PREDICTED: Rattus norvegicus positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein (predicted) (Pcqap_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19263335-A	ILMN_266592	SHANK2	NM_001004133.1	NM_001004133.1		171093	51921382	NM_001004133.1	Shank2	NP_001004133.1	ILMN_1376750	0006180746	A	3771	CGCCAACGGAATTGAGCAAAGAGATTCTGCCCACCCCTCCGTCTGCTGCA	1	+	204851694-204851743	1q41	Rattus norvegicus SH3/ankyrin domain gene 2 (Shank2), transcript variant 2, mRNA.	The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16293618] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Spank-3; ProSAP1; CortBP1	Spank-3; ProSAP1; CortBP1
Rattus norvegicus	RefSeq	GI_51921382	ILMN_266592	SHANK2	NM_001004133.1	NM_001004133.1		171093	51921382	NM_001004133.1	Shank2	NP_001004133.1	ILMN_1650300	0003130685	A	4449	GATGGCATGTGGGACCCTCTCCTCCTGTGGCAGATACCAGTGTACTCCAG	1	+	204852372-204852421	1q41	Rattus norvegicus SH3/ankyrin domain gene 2 (Shank2), transcript variant 2, mRNA.	The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 16293618] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Spank-3; ProSAP1; CortBP1	Spank-3; ProSAP1; CortBP1
Rattus norvegicus	RefSeq	GI_47576008-S	ILMN_292922	OLR144_PREDICTED	XM_001073233.1	XM_001073233.1		293282	109462581	XM_001073233.1	Olr144_predicted	XP_001073233.1	ILMN_1368762	0001240273	S	528	GACCCATTCCTACTGCTTACACCCAGACCTGATACGCTTACCGTGTGGAG				1q32	PREDICTED: Rattus norvegicus olfactory receptor 144 (predicted) (Olr144_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662150-S	ILMN_283840	RGD1306064_PREDICTED	XM_001057380.1	XM_001057380.1		306229	109503690	XM_001057380.1	RGD1306064_predicted	XP_001057380.1	ILMN_1361091	0005690441	S	3830	ACCCTGCCGTTTAATGTGTTGTCTCCACCAGCATCAGAAGGATTCAGTGC				16p16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) (RGD1306064_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576010-S	ILMN_299418	OLR954	NM_001000703.1	NM_001000703.1		404938	47576010	NM_001000703.1	Olr954	NP_001000703.1	ILMN_1370642	0001780594	S	773	ACCCTTCAGCTAAGGAATCAGTGGCTATCAATAAGGGTGTAGCAGTTCTG	7	+	4933512-4933561	7q11	Rattus norvegicus olfactory receptor 954 (Olr954), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr954	Olr954
Rattus norvegicus	RefSeq	GI_13676850-S	ILMN_262381	CYP8B1	NM_031241.1	NM_031241.1		81924	13676850	NM_031241.1	Cyp8b1	NP_112520.1	ILMN_2040873	0004260390	S	1814	GCAAATGCTGCCTCAGCCCATCCTACCTGCCTTACTTGATGCCCTTACTC	8	+	127020721-127020770	8q32	Rattus norvegicus cytochrome P450, family 8, subfamily b, polypeptide 1 (Cyp8b1), mRNA.	The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]		Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: a steroid + donor-H2 + O2 = 12-alpha-hydroxysteroid + H2O [goid 8397] [evidence IDA]; Catalysis of the reaction: a steroid + donor-H2 + O2 = 12-alpha-hydroxysteroid + H2O [goid 8397] [evidence ISS]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662235-S	ILMN_57332	RBP3	XM_341400.3	XM_341400.3		24711	109503074	XM_341400.3	Rbp3	XP_341401.3	ILMN_1366844	0002900463	S	3471	CACACTCGCAGCTCACAGGTGAACGATATGGCTCCAAGAAGAGTGTAGCC	16	+	9585265-9585282:9586695-9586726	16p16	PREDICTED: Rattus norvegicus retinol binding protein 3, interstitial (Rbp3), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence NAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_51371938-S	ILMN_291761	KCNK18	NM_001003820.1	NM_001003820.1		445371	51371938	NM_001003820.1	Kcnk18	NP_001003820.1	ILMN_1374821	0002450242	S	865	CTTAGCAATCTGGATGAAGTGGGCCAGCAAGTGGAGAGGCTGGACATCCC	1	+	265764211-265764260	1q55	Rattus norvegicus potassium channel, subfamily K, member 18 (Kcnk18), transcript variant 1, mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62078640-S	ILMN_295751	RGD1309049	NM_001013956.1	NM_001013956.1		301306	62078640	NM_001013956.1	RGD1309049	NP_001013978.1	ILMN_1361615	0001580541	S	1524	CTGCAAGTCCAGAGCAATCCCCGAACTGTTTCAAGCGTCTGTTTTGCTCC	9	-	21934229-21934278	9q13	Rattus norvegicus similar to RIKEN cDNA 4933415F23 (RGD1309049), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62659783-S	ILMN_289789	RGD1561353_PREDICTED	XR_007717.1	XR_007717.1		498290	109499109	XR_007717.1	RGD1561353_predicted		ILMN_1374241	0005080528	S	117	GGCCGGGTCCTGGTGGTTGGCGCGGGTGGTATCGGCTGTGAGCTACTTAA				13q25	PREDICTED: Rattus norvegicus similar to OTTHUMP00000044730 (predicted) (RGD1561353_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664079-S	ILMN_263868	CHST9_PREDICTED	XM_001073363.1	XM_001073363.1		291770	109506973	XM_001073363.1	Chst9_predicted	XP_001073363.1	ILMN_1368315	0005050280	S	1549	GGAAGCAATAACCTAGCCAGCTGTTACATTCACCAAGGAAGCCTCTTGCA				18p13	PREDICTED: Rattus norvegicus carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 (predicted) (Chst9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644148	ILMN_61599	RGD1306526_PREDICTED	XM_227559.4	XM_227559.4		310764	109465399	XM_227559.4	RGD1306526_predicted	XP_227559.2	ILMN_1650082	0001090706	S	922	TCCAGCACAGGAGAGCCCAGACATATTGAAACCCCGGCCACAAGCAGTCC	2	+	200969924-200969973	2q34	PREDICTED: Rattus norvegicus hypothetical LOC310764 (predicted) (RGD1306526_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656760-S	ILMN_67083	TUBD1_PREDICTED	XM_213412.4	XM_213412.4		287592	109488770	XM_213412.4	Tubd1_predicted	XP_213412.4	ILMN_1369024	0001240519	S	891	GGAGTCTCTGGCGTACAGCACGTTTACCTGGGCTGGCCTCCTCAAGCATT	10	+	76710256-76710305	10q26	PREDICTED: Rattus norvegicus tubulin, delta 1 (predicted) (Tubd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_50657377-S	ILMN_283937	HSN2	NM_001002823.1	NM_001002823.1		406234	50657377	NM_001002823.1	Hsn2	NP_001002823.1	ILMN_1362890	0003830600	S	987	GACCATTTCTGTGGTAGAACCTATGGGACAAAACTGGCCAGTAGGAAGCC	4	-	156332811-156332860	4q42	Rattus norvegicus hereditary sensory neuropathy, type II (Hsn2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_47577382-S	ILMN_280105	OLR442	NM_001000284.1	NM_001000284.1		295713	47577382	NM_001000284.1	Olr442	NP_001000284.1	ILMN_1364023	0007040014	S	390	CCGGTACCCGATAATCATGTCTCGACAGGTCTGCTTACTGTTGGTCGCTC	3	-	68657919-68657968	3q24	Rattus norvegicus olfactory receptor 442 (Olr442), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr442; TB 567; ratchr3-68554730-68553783_ORF	Olr442; TB 567; ratchr3-68554730-68553783_ORF
Rattus norvegicus	RefSeq	GI_62650216-S	ILMN_48200	LOC366523	XM_345620.2	XM_345620.2		366523	62650216	XM_345620.2	LOC366523	XP_345621.2	ILMN_1369826	0004280427	S	349	AGTCCTATGGCTGGTACTGTGTTAATAGGGGCTTCATCCCGACCAGAGCC					PREDICTED: Rattus norvegicus similar to ornithine decarboxylase-like protein (LOC366523), mRNA.					
Rattus norvegicus	RefSeq	GI_62664081-S	ILMN_59483	LOC291762	XM_226123.2	XM_226123.2		291762	62664081	XM_226123.2	LOC291762	XP_226123.1	ILMN_1371857	0002030131	S	2054	ACTTAGTGCATTACCTGGTGGGGGTACAGTATAGCTTCTCCCTCAGACAC					PREDICTED: Rattus norvegicus similar to cyclin D binding myb-like transcription factor 1 (LOC291762), mRNA.					
Rattus norvegicus	RefSeq	GI_62663038-S	ILMN_68324	LOC306365	XM_224750.3	XM_224750.3		306365	62663038	XM_224750.3	LOC306365	XP_224750.3	ILMN_1360554	0001850563	S	1094	GCAAGTGAGCAGTAAGTCCTTGTGGGTAGTGGTGGCCAATAAGAGAATGG					PREDICTED: Rattus norvegicus similar to spermatogenic cell-specific gene 2 (LOC306365), mRNA.					
Rattus norvegicus	RefSeq	GI_62667320-S	ILMN_279743	CLDN2_PREDICTED	XM_001054180.1	XM_001054180.1		300920	109469975	XM_001054180.1	Cldn2_predicted	XP_001054180.1	ILMN_1374986	0003940091	S	1530	CCCACAGAAAGCAGCTGAGTATAGGATGGGAGGCAACCTGGGCTCCAAAG				Xq35	PREDICTED: Rattus norvegicus claudin 2 (predicted) (Cldn2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656823-S	ILMN_70304	LOC501712	XM_577117.1	XM_577117.1		501712	62656823	XM_577117.1	LOC501712	XP_577117.1	ILMN_1372676	0007100577	S	2024	GGCTTTGCTGAAGTATTATGCAGTCTGTGTCCCCACACAGTTTACCTCTG				10q26	PREDICTED: Rattus norvegicus similar to schlafen 3 (LOC501712), mRNA.					
Rattus norvegicus	RefSeq	GI_62660854-S	ILMN_270249	LOC682182	XM_001060304.1	XM_001060304.1		682182	109501082	XM_001060304.1	LOC682182	XP_001060304.1	ILMN_1352745	0006840082	S	1199	GGAGAAGCAAGCTCCCGAGAAAGCCACCGAGCCATTGCCCAGAACAAAGT					PREDICTED: Rattus norvegicus similar to Galectin-5 (RL-18) (LOC682182), mRNA.					
Rattus norvegicus	RefSeq	GI_62664319	ILMN_61288	LOC361315	XM_341603.2	XM_341603.2		361315	62664319	XM_341603.2	LOC361315	XP_341604.2	ILMN_1650077	0000610452	S	1617	TCTGGACTGGCCACATGAATGCTTAGTTCTGTCTCCACATGTCCCAGGAA				18p11	PREDICTED: Rattus norvegicus similar to Ac2-256 (LOC361315), mRNA.					
Rattus norvegicus	RefSeq	GI_56605769-S	ILMN_283414	RGD1308302	NM_001008346.1	NM_001008346.1		308911	56605769	NM_001008346.1	RGD1308302	NP_001008347.1	ILMN_1349140	0006020097	S	1989	GGCAATCCTGCTTCAGCGTCCTGACTATTGGGATCACAGGCATGAGCCAC	1	-	163477061-163477110	1q33	Rattus norvegicus similar to RIKEN cDNA 1500003O22 (RGD1308302), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]		Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]	MGC105831	MGC105831
Rattus norvegicus	RefSeq	GI_62666331-S	ILMN_69290	HACE1_PREDICTED	XM_342160.3	XM_342160.3		361866	109509636	XM_342160.3	Hace1_predicted	XP_342161.3	ILMN_1370897	0006980451	S	2756	TGGCAGTTCCAGGGTCCCGCATGGTGGCTTTGCCAATATCATGGGTGGCA	20	+	49960393-49960398:49970861-49970904	20q13	PREDICTED: Rattus norvegicus HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (predicted) (Hace1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254728-S	ILMN_295136	DAD1	NM_138910.2	NM_138910.2		192275	40254728	NM_138910.2	Dad1	NP_620265.1	ILMN_1355566	0004570487	S	381	AGCCGCTCCCATTTCCTTACCGTGGAGTTGGAGACTGGCAGAGTGCTCAC	15	-	32285812-32285822:32294078-32294116	15p13	Rattus norvegicus defender against cell death 1 (Dad1), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine [goid 4579] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664158-S	ILMN_67706	RGD1307915_PREDICTED	XM_240915.4	XM_240915.4		307526	109506386	XM_240915.4	RGD1307915_predicted	XP_240915.4	ILMN_1359345	0005360102	S	2864	GGTTGTACCAGAAGTGGTTATGGGCCTGGAACGGATGGGTGAGGGAAGCG	18	+	24196697-24196746	18p12	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC32132 (predicted) (RGD1307915_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641940-S	ILMN_292281	BCCIP_PREDICTED	XM_001055516.1	XM_001055516.1		361666	109463058	XM_001055516.1	Bccip_predicted	XP_001055516.1	ILMN_1358196	0005340408	S	1253	TGTCTGGGAGGCAGATGGTCCTTCGATGATGTTCCGATGAAGCCGTTGCG				1q41	PREDICTED: Rattus norvegicus BRCA2 and CDKN1A interacting protein (predicted) (Bccip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641528-S	ILMN_292281	BCCIP_PREDICTED	XM_001055516.1	XM_001055516.1		361666	109463058	XM_001055516.1	Bccip_predicted	XP_001055516.1	ILMN_1363671	0000070017	S	1732	CCTCTCCAACACAGAGTGCAATACAGACACCAAGGGGAGGCTGGTGGTGG				1q41	PREDICTED: Rattus norvegicus BRCA2 and CDKN1A interacting protein (predicted) (Bccip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_38454265-S	ILMN_301520	SH3RF1	NM_198764.1	NM_198764.1		306417	38454265	NM_198764.1	Sh3rf1	NP_942059.1	ILMN_1351029	0004780520	S	2602	CGAGAGGACGGCTGGTTCAAAGGCACGTTACAAAGAAACGGGAAGACTGG	16	-	32054806-32054855	16p12	Rattus norvegicus SH3 domain containing ring finger 1 (Sh3rf1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IMP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]	Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Posh	Posh
Rattus norvegicus	RefSeq	GI_62644451-A	ILMN_287674	PDHA2	NM_053994.1	NM_053994.1		117098	16758899	NM_053994.1	Pdha2	NP_446446.1	ILMN_1376713	0003290129	S	2068	AGCCAATTACCTCTACCACCAAAATCCACCATTTGAAGTCCGTGGTGCAC				2q44	Rattus norvegicus pyruvate dehydrogenase E1 alpha 2 (Pdha2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3) [goid 45254] [evidence IDA]	The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate [goid 6086] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2 [goid 4739] [evidence IDA]; Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2 [goid 4739] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	Pdhal	Pdhal
Rattus norvegicus	RefSeq	GI_62649903-S	ILMN_53302	PINK1_PREDICTED	XM_216565.4	XM_216565.4		298575	109475687	XM_216565.4	Pink1_predicted	XP_216565.2	ILMN_1360093	0006020408	S	2557	CTCCAGGCTGAGGGCAATGATATGTTCACGACTGTGTTCAGGGACCAGCA	5	-	157090898-157090947	5q36	PREDICTED: Rattus norvegicus PTEN induced putative kinase 1 (predicted) (Pink1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16757991-S	ILMN_262575	CAST	NM_001033715.1	NM_001033715.1		25403	76159287	NM_001033715.1	Cast	NP_001028887.1	ILMN_1371155	0006400021	S	1975	CAGGACCAGGACCCCATTGATGCCCTCTCAGAAGACTTGGATAGCTGCCC	2	-	1502751-1502800	2q11	Rattus norvegicus calpastatin (Cast), transcript variant 2, mRNA.		A process whereby non-proliferating myoblasts fuse to existing fibres or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7520] [evidence IEP]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42176] [evidence TAS]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence IDA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IC ]; Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue [goid 30161] [evidence TAS]; Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue [goid 30161] [evidence IDA]; Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue [goid 30161] [evidence IEA]; Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue [goid 30161] [evidence IEA]	MGC108997	MGC108997
Rattus norvegicus	RefSeq	GI_57164114-S	ILMN_265713	ARHGAP29	NM_001009405.1	NM_001009405.1		310833	57164114	NM_001009405.1	Arhgap29	NP_001009405.1	ILMN_1353948	0003290672	S	3926	GGCCTGCCTGAGGGGACTCCAACCTGCCAGAGACCTCGACTAAAACGAAT	2	+	218678962-218679011	2q41	Rattus norvegicus Rho GTPase activating protein 29 (Arhgap29), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RGD1306185; MGC95332; B130017i01rik	RGD1306185; MGC95332; B130017i01rik
Rattus norvegicus	RefSeq	GI_6981361-S	ILMN_296083	LYPLA1	NM_013006.1	NM_013006.1		25514	6981361	NM_013006.1	Lypla1	NP_037138.1	ILMN_1356149	0000510193	S	2074	GCATCTTTGTAAGCAGGAGCTAACTGATGTGGGGTCATTTGGTGTGTCCG	5	-	14882427-14882476	5q12	Rattus norvegicus lysophospholipase 1 (Lypla1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]	Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate [goid 4622] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	25KDL; Pla1a	25KDL; Pla1a
Rattus norvegicus	RefSeq	GI_62666003-S	ILMN_274828	GOPC_PREDICTED	XM_001059699.1	XM_001059699.1		309774	109510147	XM_001059699.1	Gopc_predicted	XP_001059699.1	ILMN_1365955	0000510131	S	1243	AACAAGAAGACGGTGAGGGATGCCCATGAGAATGGGGACGTGGGGGCTTC				20q11	PREDICTED: Rattus norvegicus golgi associated PDZ and coiled-coil motif containing (predicted) (Gopc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662858-S	ILMN_51476	LOC290847	XM_237985.3	XM_237985.3		290847	62662858	XM_237985.3	LOC290847	XP_237985.3	ILMN_1363946	0004670438	S	1565	AGATGCCAACAGCCTACTGCACCACAGACAGGCAGACAGAACACCCCCAC					PREDICTED: Rattus norvegicus hypothetical LOC290847 (LOC290847), mRNA.					
Rattus norvegicus	RefSeq	GI_62652292-S	ILMN_272669	SDRO	XM_001057420.1	XM_001057420.1		259235	109482099	XM_001057420.1	Sdro	XP_001057420.1	ILMN_1363943	0002650600	S	1227	GCCCACCCCCGTGACAGATTTCATCCTTAGCAGATACTTGCCGAAGCCAG				7q22	PREDICTED: Rattus norvegicus orphan short chain dehydrogenase/reductase (Sdro), mRNA.					
Rattus norvegicus	RefSeq	GI_62079110-S	ILMN_300226	TMEM39B	NM_001014192.1	NM_001014192.1		362608	62079110	NM_001014192.1	Tmem39b	NP_001014214.1	ILMN_1361062	0002900156	S	1362	GATCCTCAACATCCTTTTGCTGCTAGAGGGCGCTGTCATTGTCTACCAGC	5	-	148814826-148814875	5q36	Rattus norvegicus transmembrane protein 39b (Tmem39b), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62079168-S	ILMN_269495	NHEJ1	NM_001014217.1	NM_001014217.1		363251	62079168	NM_001014217.1	Nhej1	NP_001014239.1	ILMN_1355080	0004670398	S	1192	AGTGACGCCAGCTCCTCGTTTGGTTGACGCCAGCTCCTCGTTTGATAGCA	9	-	74309323-74309372	9q33	Rattus norvegicus nonhomologous end-joining factor 1 (Nhej1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays [goid 10212] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13540713-S	ILMN_265722	PLEC1	NM_022401.1	NM_022401.1		64204	13540713	NM_022401.1	Plec1	NP_071796.1	ILMN_1360481	0000380039	S	15169	CGGGGGCCCTGCGGTGTCCGCCCCTCAATAAAAGCAATTCCAACCTTAAA	7	-	114202751-114202800	7q34	Rattus norvegicus plectin 1 (Plec1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle [goid 43292] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence IEP]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence IMP]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IDA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_48040446-S	ILMN_282419	SUCNR1	NM_001001518.1	NM_001001518.1		408199	48040446	NM_001001518.1	Sucnr1	NP_001001518.1	ILMN_1352677	0005390403	S	647	AGCAGGCAACTGTGCTATCGCTGAACAAACCTCTGCGCCTGGTGGTCCTG	2	+	149416716-149416765	2q31	Rattus norvegicus succinate receptor 1 (Sucnr1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence TAS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence TAS]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	Gpr91	Gpr91
Rattus norvegicus	RefSeq	GI_25742821-S	ILMN_271753	DUSP4	NM_022199.1	NM_022199.1		60587	25742821	NM_022199.1	Dusp4	NP_071535.1	ILMN_1356582	0004050059	S	970	TTCATGGGCCAGTTGCTGCAGTTCGAGTCTCAGGTGCTCACCACGTCCTG	16	-	61109794-61109843	16q12.2	Rattus norvegicus dual specificity phosphatase 4 (Dusp4), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence ISS]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IDA]; Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate [goid 17017] [evidence IEA]	Mkp-2; Mkp2	Mkp-2; Mkp2
Rattus norvegicus	RefSeq	GI_62664908-S	ILMN_274019	RGD1564830_PREDICTED	XM_001064772.1	XM_001064772.1		307715	109508485	XM_001064772.1	RGD1564830_predicted	XP_001064772.1	ILMN_1360954	0003780278	S	1832	TCCCTCAACTCCGCCCAGGGGACAAAGTCCAGAGTGCCACATGATTCCCA				19p11	PREDICTED: Rattus norvegicus similar to iroquois homeobox protein 6 (predicted) (RGD1564830_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575940-S	ILMN_279786	OLR148	NM_001000165.1	NM_001000165.1		293285	47575940	NM_001000165.1	Olr148	NP_001000165.1	ILMN_1375070	0001240044	S	615	CTATGGGCTGACTGTGGCTCTGCTGGCCATGGGCCTGGATTCCATCCTCA	1	+	161948785-161948834	1q32	Rattus norvegicus olfactory receptor 148 (Olr148), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr148	Olr148
Rattus norvegicus	RefSeq	GI_9506592-S	ILMN_265304	FGF17	NM_019198.1	NM_019198.1		29368	9506592	NM_019198.1	Fgf17	NP_062071.1	ILMN_1373295	0002120056	S	548	TGCCTTTCCCCAACCACGCTGAAAGGCAGAAGCAGTTCGAATTCGTGGGC	15	-	51038582-51038631	15p11	Rattus norvegicus fibroblast growth factor 17 (Fgf17), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence IEA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666427-S	ILMN_275297	RGD1560768_PREDICTED	XM_001067196.1	XM_001067196.1		298159	109512580	XM_001067196.1	RGD1560768_predicted	XP_001067196.1	ILMN_1372682	0001170021	S	1416	TCTTGGGCGCACAGGGAGGAAGCTCAAACTCACTTGTGGCAGAGGCTGGC				Xq11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A130007F10 gene (predicted) (RGD1560768_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_48675840-S	ILMN_302474	TMOD1	NM_013044.2	NM_013044.2		25566	48675840	NM_013044.2	Tmod1	NP_037176.2	ILMN_1373707	0006550242	S	2486	CTGCAGGGACAGCCAGCTCCACTCAGCTTCTCCTTGAAACACAACTGCAG	5	+	62668654-62668703	5q22	Rattus norvegicus tropomodulin 1 (Tmod1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism [goid 30016] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence IEA]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence ISS]; Formation of the myosin-based thick filaments of myofibrils [goid 30241] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Formation of myofibrils, the repeating units of striated muscle [goid 30239] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence IEA]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O [goid 4601] [evidence IEA]; Interacting selectively with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle [goid 5523] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]	E-Tmod; Tmod	E-Tmod; Tmod
Rattus norvegicus	RefSeq	GI_9506398-S	ILMN_273707	ARG2	NM_019168.1	NM_019168.1		29215	9506398	NM_019168.1	Arg2	NP_062041.1	ILMN_1357676	0006100136	S	1016	GAGGAAGAGGCCAAGGCTACAGCCAGCCTAGCAGTGGATGTGATTGCTTC	6	+	101927866-101927915	6q24	Rattus norvegicus arginase type II (Arg2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IMP]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]	A cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea [goid 50] [evidence IEA]; The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6525] [evidence IEA]; The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid [goid 6525] [evidence IMP]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence ISS]; A process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope [goid 6941] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine [goid 19547] [evidence TAS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45428] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle contraction [goid 45988] [evidence IMP]; Any process that stops or reduces the activity of the enzyme nitric-oxide synthase [goid 51001] [evidence IMP]	Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence IDA]; Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence IEA]; Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea [goid 4053] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with the enzyme nitric-oxide synthase [goid 50998] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_18158436-S	ILMN_264210	LTA	NM_080769.1	NM_080769.1		25008	18158436	NM_080769.1	Lta	NP_542947.1	ILMN_1354059	0004590070	S	1107	GGGGAGAGATGGAAAGCCGTCGGGTGACAACTAGGTCCCAGACACAAAGG	20	+	3659614-3659663	20p12	Rattus norvegicus lymphotoxin alpha (TNF superfamily, member 1) (Lta), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	An immune response mediated through a body fluid [goid 6959] [evidence ISS]; An immune response mediated through a body fluid [goid 6959] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48147] [evidence IDA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]	Tnfb	Tnfb
Rattus norvegicus	RefSeq	GI_27545383-S	ILMN_268404	HSD17B6	NM_173305.1	NM_173305.1		286964	27545383	NM_173305.1	Hsd17b6	NP_775427.1	ILMN_1358609	0001580338	S	1299	GCCTAAACCACGTATGGGCTGTCTTTTCCTCTTCTACACCCACAGGCACC				7q11	Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 6 (Hsd17b6), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence TAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+ [goid 4303] [evidence IEA]; Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+ [goid 4745] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: NAD+ + testosterone = NADH + H+ + androst-4-ene-3,17-dione [goid 47035] [evidence TAS]; Catalysis of the reaction: testosterone + NAD+ = androst-4-ene-3,17-dione + NADH [goid 50327] [evidence IEA]	Hsd17b9; MGC108559	Hsd17b9; MGC108559
Rattus norvegicus	RefSeq	GI_62643147-S	ILMN_273426	RGD1565641_PREDICTED	XM_001053477.1	XM_001053477.1		499567	109466294	XM_001053477.1	RGD1565641_predicted	XP_001053477.1	ILMN_1369287	0006900441	S	108	GAGCGAGGTGTGGAAATCATCTTCATTGGTGACAGAAGCCCAGGAGGCTG				2q23	PREDICTED: Rattus norvegicus RGD1565641 (predicted) (RGD1565641_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659444-S	ILMN_48303	LOC498245	XM_573468.1	XM_573468.1		498245	62659444	XM_573468.1	LOC498245	XP_573468.1	ILMN_2039861	0005130753	S	342	CTAGAGAAAATCTGATGGCGAGAGGCAAGCGCAGGAACCCAAGCAACAGA					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498245), mRNA.					
Rattus norvegicus	RefSeq	GI_62647100-S	ILMN_273291	RGD1311823_PREDICTED	XM_001070589.1	XM_001070589.1		362346	109473387	XM_001070589.1	RGD1311823_predicted	XP_001070589.1	ILMN_1356370	0002320451	S	778	ACAAGCTCCAGGGAATTGAAGTTGGACATTTCATGGGAGGGGACGTGGGC				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700016G05 (predicted) (RGD1311823_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660988-S	ILMN_49294	DLG5_PREDICTED	XM_223768.3	XM_223768.3		305645	62660988	XM_223768.3	Dlg5_predicted	XP_223768.3	ILMN_1352154	0001990170	S	7848	AGAACGGGGACGAGGAAGAGCCCGAGGAGGCGAGGAGGAAGAAGCGAGCA				15p16	PREDICTED: Rattus norvegicus discs, large homolog 5  (Drosophila) (predicted) (Dlg5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394008-S	ILMN_269800	PPIA	NM_017101.1	NM_017101.1		25518	8394008	NM_017101.1	Ppia	NP_058797.1	ILMN_1372734	0006290280	S	404	GGCTGGATGGCAAGCATGTGGTCTTTGGGAAGGTGAAAGAAGGCATGAGC	14	+	87169457-87169457:87169657-87169705	14q21	Rattus norvegicus peptidylprolyl isomerase A (cyclophilin A) (Ppia), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; Any process that modulates the frequency, rate or extent of viral genome replication [goid 45069] [evidence ISS]; Any process that modulates the frequency, rate or extent of viral genome replication [goid 45069] [evidence ISS]	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0) [goid 3755] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence IEA]	MGC72881; CYCA	MGC72881; CYCA
Rattus norvegicus	RefSeq	GI_47271542-S	ILMN_292173	BAMBI	NM_139082.2	NM_139082.2		83837	47271542	NM_139082.2	Bambi	NP_620782.1	ILMN_1364929	0002450075	S	1245	AGCAGAGAGAGGACTCTGCACACTTTCCCAGGGTTCTTAGTGTCCCAGGG	17	-	62654176-62654225	17q12.1	Rattus norvegicus BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis) (Bambi), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IEP]			
Rattus norvegicus	RefSeq	GI_47576386-S	ILMN_299738	OLR155	NM_001000168.1	NM_001000168.1		293302	47576386	NM_001000168.1	Olr155	NP_001000168.1	ILMN_1373133	0006180707	S	689	CCAAGGAAGCCCACCACAAAGCAGTCAACACCTGCACCACACACATCTGC	1	+	162240647-162240696	1q32	Rattus norvegicus olfactory receptor 155 (Olr155), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162335141-162336112_ORF; Olr155	ratchr1-162335141-162336112_ORF; Olr155
Rattus norvegicus	RefSeq	GI_62667403-S	ILMN_262761	MGC114492	NM_001024895.1	NM_001024895.1		317324	67846065	NM_001024895.1	MGC114492	NP_001020066.1	ILMN_1348969	0001400239	S	863	CAATTGTGCCAGTGAGCAGGTGCTGTGGCGTATACTGAACAACGTAGGGC	X	-	138856762-138856811	Xq36	Rattus norvegicus similar to melanoma antigen family A, 5 (MGC114492), mRNA.					
Rattus norvegicus	RefSeq	GI_62654416-S	ILMN_55856	LOC363159	XM_343498.2	XM_343498.2		363159	62654416	XM_343498.2	LOC363159	XP_343499.2	ILMN_1352705	0002350170	S	1405	CTCTGCCTTGCCCATTGAGGACCACCCAGAAAACCAGGGTGTGGCAGTGA				8q32	PREDICTED: Rattus norvegicus similar to mKIAA0089 protein (LOC363159), mRNA.					
Rattus norvegicus	RefSeq	GI_62660783-S	ILMN_55027	LOC289786	XM_214092.4	XM_214092.4		289786	109500011	XM_214092.4	LOC289786	XP_214092.3	ILMN_1372544	0004150484	S	183	TATTGCAACCATCCTGAAAGGGGACCAACGAGAGCCCCATGGCCTGACCC	14	-	87360530-87360579	14q21	PREDICTED: Rattus norvegicus hypothetical protein LOC289786 (LOC289786), mRNA.					
Rattus norvegicus	RefSeq	GI_62660782-S	ILMN_55027	LOC289786	XM_214092.4	XM_214092.4		289786	109500011	XM_214092.4	LOC289786	XP_214092.3	ILMN_1368085	0000730278	S	4185	ACACAAAGCAGCAGCGGAGAAGTTCAAGGTGCCCTCAGAGTCCTCAGCCC	14	-	87355240-87355289	14q21	PREDICTED: Rattus norvegicus hypothetical protein LOC289786 (LOC289786), mRNA.					
Rattus norvegicus	RefSeq	GI_16758895-S	ILMN_297577	PTPN2	NM_053990.1	NM_053990.1		117063	16758895	NM_053990.1	Ptpn2	NP_446442.1	ILMN_1354332	0002900619	S	1174	GCAAGACCTGAAGCCCACTCCGGAAACTAAAGTGAGGCTTGCTAACCCTG	18	-	64206154-64206203	18q12.1	Rattus norvegicus protein tyrosine phosphatase, non-receptor type 2 (Ptpn2), mRNA.		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS];  [goid 4726] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_57164096-S	ILMN_297608	ARMC5	NM_001009455.1	NM_001009455.1		361653	57164096	NM_001009455.1	Armc5	NP_001009455.1	ILMN_1357732	0007040102	S	3157	CTAACAAGCCAATACCAGAGTCTGCAGGAGTCCAGAGGGACAGCTCAGGC	1	+	187502850-187502899	1q36	Rattus norvegicus armadillo repeat containing 5 (Armc5), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94568	MGC94568
Rattus norvegicus	RefSeq	GI_62642518-S	ILMN_68274	RGD1310668_PREDICTED	XM_217643.4	XM_217643.4		292130	109460282	XM_217643.4	RGD1310668_predicted	XP_217643.4	ILMN_1364715	0004060168	S	2327	AGCTCAGCATCGTGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGG	1	-	263221424-263221473	1q55	PREDICTED: Rattus norvegicus similar to expressed sequence AU041783 (predicted) (RGD1310668_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591907-S	ILMN_271044	AP2A2	NM_031008.1	NM_031008.1		81637	13591907	NM_031008.1	Ap2a2	NP_112270.1	ILMN_1353636	0001660435	S	2987	AGCCAGCCCCTGGGTGTGAAGGGAATGCAGGACACAGTTTGAGAAGGGCT	1	+	201813275-201813324	1q41	Rattus norvegicus adaptor protein complex AP-2, alpha 2 subunit (Ap2a2), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence IEA]; Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules [goid 30117] [evidence ISS]; A membrane coat adaptor complex that links clathrin to a membrane [goid 30131] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism [goid 50690] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a lipid [goid 8289] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]	MGC93391	MGC93391
Rattus norvegicus	RefSeq	GI_62651686-S	ILMN_262671	NFIC	XM_001075535.1	XM_001075535.1		29228	109481518	XM_001075535.1	Nfic	XP_001075535.1	ILMN_1357287	0001400358	S	940	AGCCGCAACTGGACGGAAGACATGGAAGGAGGCATCTCATCCCCGGTGAA				7q11	PREDICTED: Rattus norvegicus nuclear factor I/C (Nfic), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence NAS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IPI]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62648762-S	ILMN_266450	GJA10	XM_001063402.1	XM_001063402.1		313126	109476283	XM_001063402.1	Gja10	XP_001063402.1	ILMN_1358224	0000940044	S	1454	CAGGGAAACCTCTCACAGATCGCCAGAGTCACTTCCAAGGCAGCGATGGC				5q21	PREDICTED: Rattus norvegicus gap junction membrane channel protein alpha 10 (Gja10), mRNA.	Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]; An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction [goid 5922] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; The biosynthesis of a synapse [goid 7416] [evidence IEA]; The biosynthesis of a synapse [goid 7416] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light [goid 9416] [evidence ISS]; The series of events involved in visual perception in which a sensory light stimulus is received by a cell and converted into a molecular signal [goid 50908] [evidence IEA]; The series of events involved in visual perception in which a sensory light stimulus is received by a cell and converted into a molecular signal [goid 50908] [evidence ISS]	A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence IEA]; A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes [goid 5243] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62662822	ILMN_282868	LOC684528	XM_001070838.1	XM_001070838.1		684528	109504366	XM_001070838.1	LOC684528	XP_001070838.1	ILMN_1649941	0002760025	S	1730	TCCCACAGCCGGACCCTACTACTCGCCATATGCACTGTATGGACAGAGGC					PREDICTED: Rattus norvegicus similar to zinc finger protein 703 (LOC684528), mRNA.					
Rattus norvegicus	RefSeq	GI_62660309-S	ILMN_62253	LOC498342	XM_573574.1	XM_573574.1		498342	62660309	XM_573574.1	LOC498342	XP_573574.1	ILMN_1357226	0003840041	S	1407	GTCATGCGTCACAAAGGGGACCTGAGACCACTTGGACATAACCTTGCCTG					PREDICTED: Rattus norvegicus similar to UDP-glucuronosyltransferase (LOC498342), mRNA.					
Rattus norvegicus	RefSeq	GI_22219453-S	ILMN_262700	SLC16A2	NM_147216.1	NM_147216.1		259248	22219453	NM_147216.1	Slc16a2	NP_671749.1	ILMN_1368047	0004210358	S	1560	GGATAAGATGCTGTCCCACGATCCAGACCCCAACGGAGAACTGCTGCCAG	X	-	91700582-91700631	Xq31	Rattus norvegicus solute carrier family 16, member 2 (monocarboxylic acid transporter 8) (Slc16a2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of hormones into, out of, within or between cells [goid 9914] [evidence IMP]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of thyroid hormones from one side of the membrane to the other. Thyroid hormone are any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine [goid 15349] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62653022-S	ILMN_53065	DDX23_PREDICTED	XM_217050.4	XM_217050.4		300208	109481250	XM_217050.4	Ddx23_predicted	XP_217050.2	ILMN_1368395	0001450044	S	2324	CACCGAATTGGCCGCACAGGAAGAGCAGGCAAGAGTGGTGTAGCCATCAC	7	-	137395555-137395604	7q36	PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted) (Ddx23_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651736-S	ILMN_266315	ATP8B3_PREDICTED	XM_001076355.1	XM_001076355.1		299616	109481561	XM_001076355.1	Atp8b3_predicted	XP_001076355.1	ILMN_1351764	0006520309	S	3820	GTCCACCCCAACGCTAGCTCCCAGACCACGGAGAAACAGACCGCCATTAA				7q11	PREDICTED: Rattus norvegicus ATPase, Class I, type 8B, member 3 (predicted) (Atp8b3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658694-S	ILMN_63484	LOC501829	XM_577241.1	XM_577241.1		501829	62658694	XM_577241.1	LOC501829	XP_577241.1	ILMN_1363392	0006940397	S	806	CCTACCCACTTTGACCCATGACTGCAAGATGGAAGAGATTCTCCAGGGTG					PREDICTED: Rattus norvegicus similar to paired immunoglobin-like type 2 receptor beta (LOC501829), mRNA.					
Rattus norvegicus	RefSeq	GI_47576070-S	ILMN_286391	OLR1416_PREDICTED	XM_001075552.1	XM_001075552.1		287314	109490784	XM_001075552.1	Olr1416_predicted	XP_001075552.1	ILMN_1362188	0005860053	S	384	CCACAGGGTATGTCTTCTCCTGATATCTTCATGTTGGCTCCTGGGATCCT				10q22	PREDICTED: Rattus norvegicus olfactory receptor 1416 (predicted) (Olr1416_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665316-S	ILMN_265905	NUDT7_PREDICTED	XM_001076428.1	XM_001076428.1		361413	109508824	XM_001076428.1	Nudt7_predicted	XP_001076428.1	ILMN_1349833	0005860093	S	598	CGAAGTACCTCATCAAGGGAATGACCTCAAAATTGGCTGTGCTGGCTGCC				19q12	PREDICTED: Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 7 (predicted) (Nudt7_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653726-S	ILMN_67418	SIN3A_PREDICTED	XM_343395.3	XM_343395.3		363067	109483480	XM_343395.3	Sin3a_predicted	XP_343396.1	ILMN_1362562	0006510037	S	4546	GGGACTGTTTTGTACCTGCTTCTTTCTAGTCTGCCCTAGTGCCATCCACC	8	+	60884538-60884587	8q24	PREDICTED: Rattus norvegicus transcriptional regulator, SIN3A (yeast) (predicted) (Sin3a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576316-S	ILMN_269418	OLR1519	NM_001000037.1	NM_001000037.1		287517	47576316	NM_001000037.1	Olr1519	NP_001000037.1	ILMN_1360191	0000460427	S	741	GGTGGCTCTCTTCTATGGGACCCTTTGTATGGTGTATCTGAAACCCCTGC	10	+	61633538-61633587	10q24	Rattus norvegicus olfactory receptor 1519 (Olr1519), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1519	Olr1519
Rattus norvegicus	RefSeq	GI_62658520-S	ILMN_55021	FTSJ2_PREDICTED	XM_221949.3	XM_221949.3		304323	62658520	XM_221949.3	Ftsj2_predicted	XP_221949.3	ILMN_1359356	0005050097	S	7638	CCTCCTGGGGTCTGGCAACTTGGGGCACAGGAAGAAGACCGAAGCCTGAT				12q11	PREDICTED: Rattus norvegicus FtsJ homolog 2 (E. coli) (predicted) (Ftsj2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657297-S	ILMN_265256	RGD1565238_PREDICTED	XM_001081651.1	XM_001081651.1		498019	109492148	XM_001081651.1	RGD1565238_predicted	XP_001081651.1	ILMN_1369002	0002480504	S	745	TGGGAACCTTACTGGCACGGCCTTCTGTGTTCCTACTCCCAATGTATCTG				10q32.1	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1565238_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660729-S	ILMN_52133	SF3A1_PREDICTED	XM_223566.4	XM_223566.4		305479	109499946	XM_223566.4	Sf3a1_predicted	XP_223566.2	ILMN_1356804	0003190280	S	2521	CTGCAAGTGGACTCCTGCCATTGTACCTCTTTCCACCACCAATTCCGGGA	14	+	84804327-84804376	14q21	PREDICTED: Rattus norvegicus splicing factor 3a, subunit 1 (predicted) (Sf3a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646106-S	ILMN_68623	CBFA2T2_PREDICTED	XM_215882.3	XM_215882.3		296293	109469024	XM_215882.3	Cbfa2t2_predicted	XP_215882.3	ILMN_1363341	0004850168	S	2328	GCCCCATATCCACCCTCAGGTGACACGGATTGGCCTAAAAGAGACTTGGG	3	+	145007589-145007638	3q41	PREDICTED: Rattus norvegicus core-binding factor, runt domain, alpha subunit 2; translocated to, 2 (predicted) (Cbfa2t2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639772-S	ILMN_277440	RGD1308141_PREDICTED	XM_001080782.1	XM_001080782.1		308594	109461947	XM_001080782.1	RGD1308141_predicted	XP_001080782.1	ILMN_1367525	0006100300	S	2118	GCGGTCACAGCCAAAGCATGGGATCCGAGATGAGTAGAGGCTTCAGCTCC				1q22	PREDICTED: Rattus norvegicus similar to BC013491 protein (predicted) (RGD1308141_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34879627-S	ILMN_63496	RGD1562691_PREDICTED	XM_341468.2	XM_341468.2		361185	109503601	XM_341468.2	RGD1562691_predicted	XP_341469.2	ILMN_1364980	0000130148	S	830	TTGTGTGCAACCAGGAAGGCAGCAGTCGCCGGTGTGGTGGGCAAGGAGAT	16	-	82841630-82841679	16q12.5	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0710008K08 (predicted) (RGD1562691_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666265-S	ILMN_65979	CDC40_PREDICTED	XM_342154.3	XM_342154.3		361859	109509613	XM_342154.3	Cdc40_predicted	XP_342155.1	ILMN_1364339	0000380471	S	2313	CTATCAGAAAATGCCTGTAGCCCCCGTTGGAAAGCCGTAACCGTGGGGAG	20	-	44952803-44952852	20q12	PREDICTED: Rattus norvegicus cell division cycle 40 homolog (yeast) (predicted) (Cdc40_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34876899-S	ILMN_282715	PLAC9_PREDICTED	XM_001056849.1	XM_001056849.1		361105	109503678	XM_001056849.1	Plac9_predicted	XP_001056849.1	ILMN_1368037	0005690717	S	403	GAAGTGACAGGTCTGCTGGGCCTGCTGGAGGAACTGGCTTCAAACCTACC				16p16	PREDICTED: Rattus norvegicus placenta-specific 9 (predicted) (Plac9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650717-S	ILMN_50709	TTC6_PREDICTED	XM_216713.3	XM_216713.3		299067	62650717	XM_216713.3	Ttc6_predicted	XP_216713.3	ILMN_1360635	0006770685	S	1515	GAGGCCATCAGACTTTACCCTGAGAGTGTGCGTGCCTACATCTGCAGAGG				6q23	PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 6 (predicted) (Ttc6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577388-S	ILMN_277184	OLR444	NM_001001123.1	NM_001001123.1		406044	47577388	NM_001001123.1	Olr444	NP_001001123.1	ILMN_1366558	0006840041	S	697	GGGAGATGCAAAGCCTTCTCAACTTGTTCCTCTCACTTGGCAGCTGTCTC	3	+	68834521-68834570	3q24	Rattus norvegicus olfactory receptor 444 (Olr444), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr444	Olr444
Rattus norvegicus	RefSeq	GI_62660791-S	ILMN_55485	LOC360978	XM_341254.2	XM_341254.2		360978	62660791	XM_341254.2	LOC360978	XP_341255.2	ILMN_1350354	0004850138	S	425	GAGGAAAAACTACACGCCCGAAAGCAGGAAAACAGGTCTACAGCACTCCT					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC360978), mRNA.					
Rattus norvegicus	RefSeq	GI_8393890-S	ILMN_283142	P2RY2	NM_017255.1	NM_017255.1		29597	8393890	NM_017255.1	P2ry2	NP_058951.1	ILMN_1364530	0003440619	S	1871	CAGCCTCTTAAATCCAAGGGAGAAGCAGGCCCAGGGAGAACACAGCAGAG	1	-	158440101-158440150	1q32	Rattus norvegicus purinergic receptor P2Y, G-protein coupled 2 (P2ry2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence TAS]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	P2Y2	P2Y2
Rattus norvegicus	RefSeq	GI_27715610-S	ILMN_278468	RGD1559786	XM_001059650.1	XM_001059650.1		298384	109476872	XM_001059650.1	RGD1559786	XP_001059650.1	ILMN_2039557	0005390196	S	336	CAATAGTAGAGTTTGAGTGCCGGGGCCTTGAACCAGTTGACTTCCAGCCC				5q35	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610037L13, transcript variant 2 (RGD1559786), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62666803-S	ILMN_275454	PIGA_MAPPED	XM_001067339.1	XM_001067339.1		363464	109511699	XM_001067339.1	Piga_mapped	XP_001067339.1	ILMN_1374279	0000060102	S	1264	GCGAGTGTCAAAGGAATCCGTGTTGCCAATGCACAAGAGATTGGACAGGC				Xq21	PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class A (mapped) (Piga_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62648942-S	ILMN_292776	RGD1305420	NM_001025652.1	NM_001025652.1		298072	71043823	NM_001025652.1	RGD1305420	NP_001020823.1	ILMN_1364955	0006550403	S	1174	CCTCGGTCTGTGTACCGGCGGAAGCTCTGTGAGGACCGCCTTTTCTTCTT	5	-	62943153-62943167:62943168-62943202	5q22	Rattus norvegicus similar to Nef associated protein 1 (RGD1305420), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC116115	MGC116115
Rattus norvegicus	RefSeq	GI_57114257-S	ILMN_269186	V1RK2	NM_001008943.1	NM_001008943.1		494289	57114257	NM_001008943.1	V1rk2	NP_001008943.1	ILMN_1354967	0006590288	S	504	CTGCCAAAGTAGCCAGGTTCGCTATCACTCCACCATGTCAATTGTCACTT	1	+	73699475-73699524	1q21	Rattus norvegicus vomeronasal 1 receptor, K2 (V1rk2), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_50811818-S	ILMN_281086	SPATA4	NM_001002852.1	NM_001002852.1		306441	50811818	NM_001002852.1	Spata4	NP_001002852.1	ILMN_1349489	0000510056	S	747	TCAAACCAACAGTGGGAGAAATCACAGTTGGCCATCTTCCTGCCCATAGC	16|NW_047481.1	+	105609-105658		Rattus norvegicus spermatogenesis associated 4 (Spata4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]		Srg2; Tsarg2	Srg2; Tsarg2
Rattus norvegicus	RefSeq	GI_62717898-S	ILMN_54436	LOC501249	XM_576668.1	XM_576668.1		501249	62717898	XM_576668.1	LOC501249	XP_576668.1	ILMN_1362815	0002480215	S	502	AATACGGGGCAGGGAACCCATCTGCCCAAGTGTACTGTCTGTCCCGGGCA					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC501249), mRNA.					
Rattus norvegicus	RefSeq	GI_53850653-S	ILMN_269019	VRK3	NM_001005561.1	NM_001005561.1		361565	53850653	NM_001005561.1	Vrk3	NP_001005561.1	ILMN_1367627	0001230040	S	1499	GTAGTGTGACTCGGGGCCTTGTTTGAAGTCATAGCTCCTCAAAGAATCCC	1	+	95258265-95258314	1q22	Rattus norvegicus vaccinia related kinase 3 (Vrk3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]	MGC93929	MGC93929
Rattus norvegicus	RefSeq	GI_11024679-S	ILMN_297372	EIF2C2	NM_021597.1	NM_021597.1		59117	11024679	NM_021597.1	Eif2c2	NP_067608.1	ILMN_1368346	0006130717	S	2268	TCATGCTGGCATCCAGGGGACAAGCCGTCCTTCCCACTACCACGTGCTCT	7	-	110828275-110828324	7q34	Rattus norvegicus eukaryotic translation initiation factor 2C, 2 (Eif2c2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence NAS]; Any process by which RNA molecules inactivate expression of target genes [goid 31047] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_53850635-S	ILMN_281893	TM9SF2	NM_001005554.1	NM_001005554.1		306197	53850635	NM_001005554.1	Tm9sf2	NP_001005554.1	ILMN_1351439	0004590292	S	2482	CGATACTGGACAGTCGATTGTACATAGGGTTTTCTAGACTCGGTAGGTGG	15	+	107281005-107281054	15q25	Rattus norvegicus transmembrane 9 superfamily member 2 (Tm9sf2), mRNA.	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC93724	MGC93724
Rattus norvegicus	RefSeq	GI_62667325-S	ILMN_278444	RGD1564353_PREDICTED	XM_001053696.1	XM_001053696.1		300923	109469961	XM_001053696.1	RGD1564353_predicted	XP_001053696.1	ILMN_1361510	0005420270	S	922	GAAGGTAGAGGAGGTTGCAAAGGCATTTGAGGAGTACCGTCGCAAGGGGC				Xq35	PREDICTED: Rattus norvegicus similar to Nucleoporin 62 (predicted) (RGD1564353_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659729-S	ILMN_282704	RGD1561025_PREDICTED	XM_001053853.1	XM_001053853.1		360878	109499032	XM_001053853.1	RGD1561025_predicted	XP_001053853.1	ILMN_1352150	0003520358	S	1103	TGGGCCACCGTACTTGCCTTTGGAACGACCAGCTTTATTTGGTTGGGGGT				13q24	PREDICTED: Rattus norvegicus similar to kelch/ankyrin repeat containing cyclin A1 interacting protein isoform a (predicted) (RGD1561025_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13324701-S	ILMN_283620	ACVR1	NM_024486.1	NM_024486.1		79558	13324701	NM_024486.1	Acvr1	NP_077812.1	ILMN_1349367	0006520152	S	1580	GGTACCAGAACCCATCCGCCAGACTCACAGCTCTACGTATCAAAAAGACT	3	-	40191877-40191926	3q21	Rattus norvegicus activin A receptor, type I (Acvr1), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]; A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed [goid 48179] [evidence ISS]; A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed [goid 48179] [evidence IDA]; A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed [goid 48179] [evidence IMP]; A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed [goid 48179] [evidence IEA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure [goid 1655] [evidence IMP]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence IEA]; Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response [goid 2526] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence ISS]; The process whose specific outcome is the progression of the immature germ cell over time, from its formation to the mature structure (gamete) [goid 7281] [evidence IEA]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence ISS]; The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry [goid 7368] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm [goid 7369] [evidence ISS]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence ISS]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence ISS]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32926] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of any activin receptor signaling pathway [goid 32926] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of osteoblast differentiation [goid 45669] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]; Any process that modulates the frequency, rate or extent of skeletal muscle development [goid 48641] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary [goid 51145] [evidence IEA]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence ISS]; The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear [goid 60037] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + receptor-protein serine/threonine = ADP + receptor-protein serine/threonine phosphate [goid 4675] [evidence TAS];  [goid 4702] [evidence IMP]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I TGF-beta receptor [goid 5025] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence ISS]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence IDA]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence ISS]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence IMP]; Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals [goid 16361] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate [goid 19838] [evidence ISS]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IMP]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence ISS]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence IEA]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence ISS]; Interacting selectively with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types [goid 50431] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656608-S	ILMN_298572	WSB1	NM_001025664.1	NM_001025664.1		303336	71043687	NM_001025664.1	Wsb1	NP_001020835.2	ILMN_1357658	0006180279	S	1380	GGAAATGGGTTGGTCAGAATGGATGGTGTGAAGCTGACTGGTGAGAGAGG	10	-	65427565-65427614	10q25	Rattus norvegicus WD repeat and SOCS box-containing 1 (Wsb1), transcript variant 2, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]		MGC112712	MGC112712
Rattus norvegicus	RefSeq	GI_62649259-S	ILMN_65851	LOC362543	XM_342864.2	XM_342864.2		362543	62649259	XM_342864.2	LOC362543	XP_342865.1	ILMN_1352230	0004050411	S	624	AAACAGACACAGAAGGAACACCCATTCAGAGCCTGTCCCACATGTGGCCC					PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC362543), mRNA.					
Rattus norvegicus	RefSeq	GI_62641750-S	ILMN_277945	RGD1562657_PREDICTED	XM_001073814.1	XM_001073814.1		361709	109463385	XM_001073814.1	RGD1562657_predicted	XP_001073814.1	ILMN_1366178	0005390672	S	2442	CCTGCCAAAGGGTGTAGAAAGTCGTGTGTGGTGTCCACTTGGGCCACAGG				1q43	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp761E198 (predicted) (RGD1562657_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648684-S	ILMN_58839	CBFA2T1_PREDICTED	XM_342808.3	XM_342808.3		362489	109474676	XM_342808.3	Cbfa2t1_predicted	XP_342809.3	ILMN_1375107	0006290685	S	3071	GCAGCTTCCAAGTCAGCCAGCTGCCCTAAATAACCCTTCAACGTTTCTTC	5	+	28338023-28338072	5q13	PREDICTED: Rattus norvegicus CBFA2T1 identified gene homolog (human) (predicted) (Cbfa2t1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559948	ILMN_50418	PIK3R2	NM_022185.1	NM_022185.1		29741	11559948	NM_022185.1	Pik3r2	NP_071521.1	ILMN_1650295	0006370707	S	1870	ACACAGGCGGAGGAGATGCTGAGTGCCAAACGAGACGGGACCTTCCTCAT				16p14	Rattus norvegicus phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (Pik3r2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of anti-apoptosis [goid 19987] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of anti-apoptosis [goid 19987] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence ISS]; Modulates the activity of any of the phosphoinositide 3-kinases (PI3Ks). Regulatory subunits can link a PI3K catalytic subunit to upstream signaling events and help position the catalytic subunits close to their lipid substrates [goid 35014] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Modulates the activity of any of the phosphoinositide 3-kinases (PI3Ks). Regulatory subunits can link a PI3K catalytic subunit to upstream signaling events and help position the catalytic subunits close to their lipid substrates [goid 35014] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20301969	ILMN_296688	POU3F3	NM_138837.1	NM_138837.1		192109	20301969	NM_138837.1	Pou3f3	NP_620192.1	ILMN_1650093	0005910368	S	2488	CCGACTGCCGCTCGGGGTGGACCATGCCTAAAGATTCCGCCGCTAATATT				9q22	Rattus norvegicus POU class 3 homeobox 3 (Pou3f3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain [goid 21799] [evidence ISS]; The mitotic division of a basal progenitor giving rise to two neurons [goid 21869] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]	Brn1	Brn1
Rattus norvegicus	RefSeq	GI_62339325-S	ILMN_281202	NCBP1	NM_001014785.1	NM_001014785.1		298075	62339325	NM_001014785.1	Ncbp1	NP_001014785.1	ILMN_1357484	0006510433	S	2544	ATGGGGGAGGAGTGTGAGGAACATGAGCTGACCGACCTTTAGTTGCCCTG	5	+	62723153-62723202	5q22	Rattus norvegicus nuclear cap binding protein subunit 1, 80kDa (Ncbp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner [goid 6379] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage [goid 16070] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of mRNA 3'-end processing [goid 31442] [evidence ISS]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105807	MGC105807
Rattus norvegicus	RefSeq	GI_62654941-S	ILMN_263656	AFF3_PREDICTED	XM_001058147.1	XM_001058147.1		363220	109487010	XM_001058147.1	Aff3_predicted	XP_001058147.1	ILMN_1361719	0002340152	S	3522	GGCGGCCAATCACGTCAGCATCACCAACAGCATCCTCCACAGCTACGACT				9q21	PREDICTED: Rattus norvegicus AF4/FMR2 family, member 3 (predicted) (Aff3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663999-S	ILMN_301203	LOC498781	XM_001063340.1	XM_001063340.1		498781	109505330	XM_001063340.1	LOC498781	XP_001063340.1	ILMN_1367258	0004010575	S	3420	AATGATGGAGCAGCAAACTGGTGTGGCCCTAGCTCATGACAGCTTCCGGC	17|NW_047502.1	+	184565-184614		PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC498781), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62663998-S	ILMN_301203	LOC498781	XM_001063340.1	XM_001063340.1		498781	109505330	XM_001063340.1	LOC498781	XP_001063340.1	ILMN_1359635	0004810397	S	1388	TAGGCTACCAGCAAACAAGGACCAACACCCTCCAGCTCGAACTCCTGGAC	17|NW_047502.1	+	180408-180457		PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC498781), mRNA.		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_55741688-S	ILMN_263135	INSIG2	NM_178091.3	NM_178091.3		288985	55741688	NM_178091.3	Insig2	NP_835192.1	ILMN_1354527	0006590086	S	2195	CTCAGGCGGAGAGTGTGAACATCCCACGAGTAGTCCATACAGAATGCGTG	13	-	33330564-33330613	13q11	Rattus norvegicus insulin induced gene 2 (Insig2), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 6991] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule [goid 6991] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62718372-S	ILMN_56111	LOC501384	XM_576797.1	XM_576797.1		501384	62718372	XM_576797.1	LOC501384	XP_576797.1	ILMN_1355325	0002450114	S	962	GTGTTGTAAAAATGTATTTGTTATGAATAAAAATTGAATTCTATCTCTTG					PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501384), mRNA.					
Rattus norvegicus	RefSeq	GI_62638519-S	ILMN_53724	RGD1564487_PREDICTED	XM_574309.2	XM_574309.2		499016	109457734	XM_574309.2	RGD1564487_predicted	XP_574309.2	ILMN_1360830	0001570333	S	4340	AATTCAAGGGCCGCAAAGCCAGTGAGAAGGAAGACGGGCGACTGGGCAGC	1	+	41008343-41008392	1q11	PREDICTED: Rattus norvegicus similar to tubby super-family protein (predicted) (RGD1564487_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638942-S	ILMN_51704	LOC292645	XM_218323.3	XM_218323.3		292645	62638942	XM_218323.3	LOC292645	XP_218323.3	ILMN_1369184	0001570110	S	3315	GACAACTGTGGAGGCACTACTTGCAGAGAACCACCCCCTGTGCTCTCTCC					PREDICTED: Rattus norvegicus phospholipase A2, group IVC (LOC292645), mRNA.					
Rattus norvegicus	RefSeq	GI_57012353-S	ILMN_284043	KB1	NM_001008802.1	NM_001008802.1		300250	57012353	NM_001008802.1	Kb1	NP_001008802.1	ILMN_1374359	0001340504	S	1793	GATCCAGCTCCGGTGGCGGCGTTAAGTCCTCTGGCAGTTCTAGTGTGAAG	7	-	140541473-140541522	7q36	Rattus norvegicus type II keratin Kb1 (Kb1), mRNA.					
Rattus norvegicus	RefSeq	GI_62650810-S	ILMN_273774	RGD1305147_PREDICTED	XR_009392.1	XR_009392.1		314219	109479508	XR_009392.1	RGD1305147_predicted		ILMN_1364146	0006590427	S	2419	CCACCAGCTTCTAACAGCCCACCATGCCCCAAGTCCCTGGAAGACTCAGA					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810048J11 (predicted) (RGD1305147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650808-S	ILMN_273774	RGD1305147_PREDICTED	XR_009392.1	XR_009392.1		314219	109479508	XR_009392.1	RGD1305147_predicted		ILMN_1373567	0005570438	S	1385	CTCTAGTGTCCCCTTTGGTGATGGTGGCCTTCCTTGCACTGGACAGCTCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810048J11 (predicted) (RGD1305147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650812-S	ILMN_273774	RGD1305147_PREDICTED	XR_009392.1	XR_009392.1		314219	109479508	XR_009392.1	RGD1305147_predicted		ILMN_1364845	0005690725	S	3469	CCAAGAATGCCCGAGAGGAAACCTAAGGTCTGCGGAGCTACTTCTCAGCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810048J11 (predicted) (RGD1305147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869488-S	ILMN_263462	IFNA4_PREDICTED	XM_001053305.1	XM_001053305.1		298205	109476708	XM_001053305.1	Ifna4_predicted	XP_001053305.1	ILMN_1351518	0004230484	S	14	GTGCTTTCCTGATGGTTCTGGTGGTGATGAGCTACTGGTCAGCCTGCTGT				5q32	PREDICTED: Rattus norvegicus interferon, alpha 4 (predicted) (Ifna4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641696-S	ILMN_53371	RGD1307603_PREDICTED	XM_215189.4	XM_215189.4		293656	109459718	XM_215189.4	RGD1307603_predicted	XP_215189.4	ILMN_1349437	0006520446	S	461	CTCCTTCGCCGACTACCGCCTACTGGATTTACTTCTGAACCTAGAGCTCC	1	-	206645392-206645441	1q42	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC37914 (predicted) (RGD1307603_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641715-S	ILMN_274542	FBXL11_PREDICTED	XM_001068749.1	XM_001068749.1		361700	109463343	XM_001068749.1	Fbxl11_predicted	XP_001068749.1	ILMN_1355197	0004570484	S	6076	GGGAGCTCAGGATGGTGGCAGATGGACTGAAGCCCTTGCTGGGTCTTACT				1q42	PREDICTED: Rattus norvegicus F-box and leucine-rich repeat protein 11 (predicted) (Fbxl11_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_15100176-S	ILMN_276975	PRL3D4	NM_033233.1	NM_033233.1		24282	15100176	NM_033233.1	Prl3d4	NP_150236.1	ILMN_1367939	0002060452	S	80	ACCTGCTCTTGTGGGAAAACATGGCCTCCAAACCAACTGTGCTTGTGTCC	17	-	43914373-43914422	17p11	Rattus norvegicus prolactin family 3, subfamily d, member 4 (Prl3d4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; The process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it [goid 42976] [evidence IMP]	Interacting selectively with the prolactin receptor [goid 5148] [evidence IMP]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Csh1l1; Csh1v; Pl-Iv	Csh1l1; Csh1v; Pl-Iv
Rattus norvegicus	RefSeq	GI_62662990	ILMN_63948	RGD1561519_PREDICTED	XM_573949.2	XM_573949.2		498666	109503587	XM_573949.2	RGD1561519_predicted	XP_573949.1	ILMN_1650072	0000580487	S	947	ATATGCCGAAAACACTGCCCAACAATTCCTGCTACTCCGCTGGCATCGCG	16	-	84825788-84825796:84829697-84829737	16q12.5	PREDICTED: Rattus norvegicus similar to NZB B-cell activating factor (predicted) (RGD1561519_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655407-S	ILMN_67957	GPR35_PREDICTED	XM_346075.2	XM_346075.2		367315	62655407	XM_346075.2	Gpr35_predicted	XP_346076.1	ILMN_1353583	0005700064	S	1998	CCGTTACTGAGAAGCCCCACTCAGCATAGGTGACAATCCCCAAACTGCAC				9q36	PREDICTED: Rattus norvegicus G protein-coupled receptor 35 (predicted) (Gpr35_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394081-S	ILMN_271747	PSMB3	NM_017285.1	NM_017285.1		29676	8394081	NM_017285.1	Psmb3	NP_058981.1	ILMN_1357336	0003190446	S	605	CAGGGATGCCGTGTCGGGCATGGGCGTCATTGTCCACATCATTGAAAAAG	10	+	86458546-86458562:86459435-86459467	10q31	Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 3 (Psmb3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645427-S	ILMN_270926	RGD1309314_PREDICTED	XM_001078618.1	XM_001078618.1		311218	109470351	XM_001078618.1	RGD1309314_predicted	XP_001078618.1	ILMN_1372671	0003520068	S	841	TGCGAGCCAGGAGAAGTCCTCTTGATCCCCACCCCTTACTACGGAGCCAT				3q24	PREDICTED: Rattus norvegicus similar to 2610203E10Rik protein (predicted) (RGD1309314_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648179-S	ILMN_56298	LOC500320	XM_580058.1	XM_580058.1		500320	62648179	XM_580058.1	LOC500320	XP_580058.1	ILMN_1364077	0006400239	S	748	CTGAAGCAGGTCCCATCCGGTGACCCCCACAATGACAACACAGAGAGGAC					PREDICTED: Rattus norvegicus LOC500320 (LOC500320), mRNA.					
Rattus norvegicus	RefSeq	GI_62658469-S	ILMN_301342	GRID2IP_PREDICTED	XM_001063541.1	XM_001063541.1		288484	109496495	XM_001063541.1	Grid2ip_predicted	XP_001063541.1	ILMN_1366216	0000630520	S	3213	GGGTACTTGATCATGCATCTTGGCCACATGAAGGGCTGGGGTGCAGTGGG				12p11	PREDICTED: Rattus norvegicus glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 (predicted) (Grid2ip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647606-S	ILMN_51534	LOC502844	XM_578344.1	XM_578344.1		502844	62647606	XM_578344.1	LOC502844	XP_578344.1	ILMN_1357546	0000940017	S	106	AGAGGGCCACAATCTCCTGTAGGGCCAGCCAAAGTGTCAGTATATCTAGA				4q32	PREDICTED: Rattus norvegicus similar to Ig variable region, light chain (LOC502844), mRNA.					
Rattus norvegicus	RefSeq	GI_62648191-S	ILMN_269239	RGD1563719_PREDICTED	XM_001065149.1	XM_001065149.1		500324	109474265	XM_001065149.1	RGD1563719_predicted	XP_001065149.1	ILMN_1365840	0002030358	S	2154	GATCTTCTACGAGTGCAGCGCCTGTTCGGGTCACAACACCAAAGAGTCCC				4q42	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC4266 (predicted) (RGD1563719_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642694	ILMN_56644	LOC499495	XM_574820.1	XM_574820.1		499495	62642694	XM_574820.1	LOC499495	XP_574820.1	ILMN_1649950	0006980047	S	816	GTGCTGTTCCACCTCCCAACTTTGAGATGCCAGTTACCATCCCAGTGTCC					PREDICTED: Rattus norvegicus similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) (LOC499495), mRNA.					
Rattus norvegicus	RefSeq	GI_25742656-S	ILMN_278475	SARDH	NM_053664.1	NM_053664.1		114123	25742656	NM_053664.1	Sardh	NP_446116.1	ILMN_1354019	0004540068	S	2758	CAGTGGAGGGCCAGTCTCTCTGGACTTTGTGAAGAATGGGGACTATGCCT	3	-	6076238-6076287	3p12	Rattus norvegicus sarcosine dehydrogenase (Sardh), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]	The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid [goid 6545] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid [goid 6546] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 42426] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine [goid 42426] [evidence NAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein [goid 4047] [evidence IEA]; Catalysis of the reaction: sarcosine + acceptor + H2O = glycine + formaldehyde + reduced acceptor [goid 8480] [evidence TAS]; Catalysis of the reaction: sarcosine + acceptor + H2O = glycine + formaldehyde + reduced acceptor [goid 8480] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence NAS]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IPI]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62656042-S	ILMN_68309	NOLA2_PREDICTED	XM_213293.3	XM_213293.3		287273	109488035	XM_213293.3	Nola2_predicted	XP_213293.1	ILMN_1357709	0004050095	S	656	GGAGGGAGAGCCAGCATCTTTGCCATCTCCCGTTGAGCTCTGGTGAAGAC	10	+	37140546-37140595	10q22	PREDICTED: Rattus norvegicus nucleolar protein family A, member 2 (predicted) (Nola2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577540-S	ILMN_298629	OLR507	NM_001000678.1	NM_001000678.1		404881	47577540	NM_001000678.1	Olr507	NP_001000678.1	ILMN_1361972	0003780102	S	692	CTGAAGGCAGACGGAAGGCTTTCTCCACCTGTGGGTCCCATCTGACAGTG	3	-	69670366-69670415	3q24	Rattus norvegicus olfactory receptor 507 (Olr507), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr507	Olr507
Rattus norvegicus	RefSeq	GI_62666242-S	ILMN_64760	RGD1560140_PREDICTED	XM_577949.2	XM_577949.2		502469	109509566	XM_577949.2	RGD1560140_predicted	XP_577949.2	ILMN_1372658	0002650471	S	461	TGGAGACGCACTCCCCAGGCTCTGTATATCTGGAAGGTGCAGGGCAGCAA	20	+	38384389-38384438	20q12	PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1560140_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666416-S	ILMN_268654	C1GALT1C1	NM_001030033.1	NM_001030033.1		302499	71795645	NM_001030033.1	C1galt1c1	NP_001025204.1	ILMN_1374435	0001740524	S	1033	TCTTACCTCCGAATGGTTCTGAGAATGACTGACAGAAAGCAAGAGCATGC	X	+	6748835-6748866:6748867-6748884	Xq11	Rattus norvegicus C1GALT1-specific chaperone 1 (C1galt1c1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC124680; RGD1311230	MGC124680; RGD1311230
Rattus norvegicus	RefSeq	GI_62647378-S	ILMN_64175	LOC500159	XM_575511.1	XM_575511.1		500159	62647378	XM_575511.1	LOC500159	XP_575511.1	ILMN_1360793	0000670687	S	148	GCCGGGCAAGTCAGGACGTTGGGATTTATGTAAACTGGTTCCAGCAGAAA					PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC500159), mRNA.					
Rattus norvegicus	RefSeq	GI_62666286-S	ILMN_67106	LOC499469	XM_574793.1	XM_574793.1		499469	62666286	XM_574793.1	LOC499469	XP_574793.1	ILMN_1358822	0006650300	S	221	CGGCATTCACTGAGTTAGAACAGGTGTCAGATGGCGACCAGTGCCTGGCG					PREDICTED: Rattus norvegicus similar to Ab2-018 (LOC499469), mRNA.					
Rattus norvegicus	RefSeq	GI_47576240-S	ILMN_290889	OLR1316	NM_001000793.1	NM_001000793.1		405077	47576240	NM_001000793.1	Olr1316	NP_001000793.1	ILMN_1368685	0000450324	S	834	CACTACTGTTGTGCCCATGCTCAATCCCTTGATTTACAGCCTGAGGAATA	8	+	42653186-42653235	8q22	Rattus norvegicus olfactory receptor 1316 (Olr1316), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1316	Olr1316
Rattus norvegicus	RefSeq	GI_61557044-S	ILMN_286500	DUSP18	NM_001013128.1	NM_001013128.1		305477	61557044	NM_001013128.1	Dusp18	NP_001013146.1	ILMN_1357701	0003710239	S	1011	AACAGTTGCTTGACCCTTGAGGCTAGATGCCCAGCAGTGGGAGCAGTCCC	14	+	84560035-84560084	14q21	Rattus norvegicus dual specificity phosphatase 18 (Dusp18), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648729-S	ILMN_60893	LOC500421	XM_575785.1	XM_575785.1		500421	62648729	XM_575785.1	LOC500421	XP_575785.1	ILMN_1364122	0003290136	S	4898	AGCTGCGAGAGCCCGGAGTGAGAGGGGAGCAAGGAACCACTTTCCAGGGA					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500421), mRNA.					
Rattus norvegicus	RefSeq	GI_62651561-S	ILMN_70032	LOC503101	XM_578621.1	XM_578621.1		503101	62651561	XM_578621.1	LOC503101	XP_578621.1	ILMN_1368193	0005700500	S	293	TGCGGTCTATTACTGTGCAAGACACAGAGTCAACTCTGAGGTCCAGCTGC				6q33	PREDICTED: Rattus norvegicus similar to IgG1/kappa antibody (LOC503101), mRNA.					
Rattus norvegicus	RefSeq	GI_62644703-S	ILMN_67660	LOC366003	XM_345325.2	XM_345325.2		366003	62644703	XM_345325.2	LOC366003	XP_345326.2	ILMN_1369674	0000460673	S	3	TTTCTCTTCCCGGATGCTCAAGATGAAGCAAAGACGTGGTGGGTCCTCCG					PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23 (LOC366003), mRNA.					
Rattus norvegicus	RefSeq	GI_62649985	ILMN_279056	LOC313672	NM_001014070.1	NM_001014070.1		313672	62078872	NM_001014070.1	LOC313672	NP_001014092.1	ILMN_1650384	0004780113	S	3379	GACACCAGATGGGCCTTCCTGGGTACACAACAACCCTTTCGGCTCAGCTG	5	-	161041610-161041659	5q36	Rattus norvegicus kazrin (LOC313672), mRNA.				MGC105638	MGC105638
Rattus norvegicus	RefSeq	GI_62643025-S	ILMN_50605	RGD1562456_PREDICTED	XM_226817.4	XM_226817.4		294790	109464487	XM_226817.4	RGD1562456_predicted	XP_226817.4	ILMN_1371149	0000130706	S	1215	CCTCCAACACCTCTCGCTCAGCCGGTGCTACGATATAATACCTGAGACGC	2	-	58774364-58774413	2q16	PREDICTED: Rattus norvegicus similar to S-phase kinase-associated protein 2 (F-box protein Skp2) (F-box/WD-40 protein 1) (predicted) (RGD1562456_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24025617-S	ILMN_279870	DAB1	NM_153621.1	NM_153621.1		266729	24025617	NM_153621.1	Dab1	NP_705885.1	ILMN_1351745	0001170242	S	1468	AGCTCTCCATCCAAATCATCAGCTTCCCACGTCAGTGATCCGACCGCAGA	5	+	125694049-125694098	5q34	Rattus norvegicus disabled homolog 1 (Drosophila) (Dab1), mRNA.	Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]	The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IDA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion [goid 7162] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The process that contributes to the act of creating the structural organization of the cerebellum. This process pertains to the physical shaping of a rudimentary structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills [goid 21589] [evidence ISS]; The orderly movement of cells from one site to another in the cerebral cortex [goid 21795] [evidence ISS]; The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain [goid 21799] [evidence ISS]; The interaction between two cells that modulates the association of a neuronal cell and a glial cell involved in glial-mediated radial cell migration in the cerebral cortex [goid 21813] [evidence ISS]; The migration of postmitotic Purkinje cells along radial glial cells from the ventricular zone to the Purkinje cell layer [goid 21942] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of protein kinase activity [goid 45860] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665500-S	ILMN_51861	LOC365025	XM_577671.1	XM_577671.1		365025	62665500	XM_577671.1	LOC365025	XP_577671.1	ILMN_1363414	0005720041	S	0	ATGGAGGAGCGGCTGGAGTCGGATGTCAATGCTGCCATTGCCACCATCAA					PREDICTED: Rattus norvegicus similar to alpha tubulin subunit (LOC365025), mRNA.					
Rattus norvegicus	RefSeq	GI_62660559	ILMN_57510	LOC360941	XM_341218.2	XM_341218.2		360941	62660559	XM_341218.2	LOC360941	XP_341219.2	ILMN_1650700	0005890195	S	294	CTGTATCCATTCCTCTGTTGAAGGGCATCTGGGCTCTTTCCAGCTTCTGG					PREDICTED: Rattus norvegicus similar to ORF7 (LOC360941), mRNA.					
Rattus norvegicus	RefSeq	GI_27465594-S	ILMN_287105	TESTIN	NM_173132.1	NM_173132.1		286916	27465594	NM_173132.1	Testin	NP_775155.1	ILMN_1357925	0002760441	S	1159	ACAGACCAGCCTCTGCTGTGGGGCAAAGGGGACAGGGGTAGTGACAGCTG	17	+	9544716-9544765	17p14	Rattus norvegicus testin gene (Testin), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IDA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652400-S	ILMN_67249	NUDCD1_PREDICTED	XM_343235.3	XM_343235.3		362906	109480729	XM_343235.3	Nudcd1_predicted	XP_343236.3	ILMN_1371250	0003520411	S	2895	TGCCGTGCTTCTGTCTGCGCCATGATGTGGATGCTCTCCTCTGGCAACCA	7	-	80259628-80259677	7q31	PREDICTED: Rattus norvegicus NudC domain containing 1 (predicted) (Nudcd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658425-S	ILMN_49621	LOC498139	XM_579789.1	XM_579789.1		498139	62658425	XM_579789.1	LOC498139	XP_579789.1	ILMN_1355236	0005720594	S	400	GTGCACAGACCCCAGAGACGCTCAGTACCACAGGTCTGCAGGGAACAGGA					PREDICTED: Rattus norvegicus LOC498139 (LOC498139), mRNA.					
Rattus norvegicus	RefSeq	GI_62655484-S	ILMN_271284	RGD1566334_PREDICTED	XR_008750.1	XR_008750.1		501197	109487579	XR_008750.1	RGD1566334_predicted		ILMN_1372623	0000780164	S	811	CCGAATATGTCTGTCTATAGCCCTATCCTGGTGGTGTTTTCCATAGCCAC				9q36	PREDICTED: Rattus norvegicus similar to Hmgb1 protein (predicted) (RGD1566334_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928813-S	ILMN_269798	PLA2G2A	NM_031598.1	NM_031598.1		29692	13928813	NM_031598.1	Pla2g2a	NP_113786.1	ILMN_1359441	0002360692	S	1189	TGGCATCCAACTTCCTGCTGCGTAGTACCTAAGAGAGTCCTGAGAGGCTC	5	+	157657294-157657343	5q36	Rattus norvegicus phospholipase A2, group IIA (platelets, synovial fluid) (Pla2g2a), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]	The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]; The process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line [goid 35019] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]	Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence TAS]; Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate [goid 4623] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	sPLA2	sPLA2
Rattus norvegicus	RefSeq	GI_62664574-S	ILMN_280005	RGD1559707_PREDICTED	XR_008403.1	XR_008403.1		498880	109507503	XR_008403.1	RGD1559707_predicted		ILMN_1374436	0002650035	S	391	CCAAGAGTGTGCCTGTAGCTATCACACCACTGTCAAGGAAGTCACTAGCC				18q12.1	PREDICTED: Rattus norvegicus similar to alpha tubulin (predicted) (RGD1559707_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.46489	ILMN_161328	RN.46489	Rn.46489		Rn.46489		51545493	CV078462			ILMN_1530354	0000940041	S	403	ATAGTGCTGTTTAGTATTTCCCCACTGTTCAGATGACTTCGTTAGGAAAA					AGENCOURT_31479210 NIH_MGC_251 Rattus norvegicus cDNA clone IMAGE:7385412 5', mRNA					
Rattus norvegicus	RefSeq	GI_62660347-S	ILMN_282547	RGD1311135_PREDICTED	XR_009058.1	XR_009058.1		364136	109500533	XR_009058.1	RGD1311135_predicted		ILMN_1374158	0002320112	S	3158	CGAGTCTCAGAGTGGAGAGCTGCGAAGTGTGTACGAACTCCCCGGAGAAG				14p11	PREDICTED: Rattus norvegicus similar to 2-aminoadipic 6-semialdehyde dehydrogenase (predicted) (RGD1311135_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8394448-S	ILMN_290964	TIMM44	NM_017267.1	NM_017267.1		29635	8394448	NM_017267.1	Timm44	NP_058963.1	ILMN_1372640	0005670154	S	1516	GCTGGACAAGGAAAGAGCTTGGGGTGTTTAGCAGGTGGGGGAATGTTTCC	12	+	1531049-1531098	12p12	Rattus norvegicus translocase of inner mitochondrial membrane 44 homolog (yeast) (Timm44), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IMP]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IPI]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IPI]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IPI]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666321-S	ILMN_286741	AIM1_PREDICTED	XM_001067657.1	XM_001067657.1		309866	109510275	XM_001067657.1	Aim1_predicted	XP_001067657.1	ILMN_1355636	0001940093	S	5850	GGATGGGTGCATCAAGTGCAGGATAGCAGAGGACTGTTGCCTGACCATCG					PREDICTED: Rattus norvegicus absent in melanoma 1 (predicted) (Aim1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663423-S	ILMN_53683	EEF1E1_PREDICTED	XM_214451.4	XM_214451.4		291057	109504833	XM_214451.4	Eef1e1_predicted	XP_214451.2	ILMN_1366690	0002760039	S	545	GCCCCCAGCAGCAGGATAGAAGTGAAGGGGAAAGTGTGTTCTGGACCATG	17	+	32227678-32227727	17p12	PREDICTED: Rattus norvegicus eukaryotic translation elongation factor 1 epsilon 1 (predicted) (Eef1e1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650748-S	ILMN_268627	FKBP3_PREDICTED	XM_001080093.1	XM_001080093.1		299104	109479450	XM_001080093.1	Fkbp3_predicted	XP_001080093.1	ILMN_1364360	0001990671	S	625	CCAGAATGGGCCTATGGAAAGAAAGGACAGCCGGACGCCAAAATTCCACC				6q24	PREDICTED: Rattus norvegicus FK506 binding protein 3 (predicted) (Fkbp3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662923-S	ILMN_288321	TPTE_PREDICTED	XM_001073464.1	XM_001073464.1		364629	109504431	XM_001073464.1	Tpte_predicted	XP_001073464.1	ILMN_1372147	0002810270	S	1962	TGGTCCAAAGTTTGCAGTCGAGGTGTATTTTGAGGAGATAAGCTCCACGG				16q12.5	PREDICTED: Rattus norvegicus transmembrane phosphatase with tensin homology (predicted) (Tpte_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.16340-S	ILMN_160786	RN.16340-S	Rn.16340-S		Rn.16340-S		82512066	DV718743			ILMN_1530532	0006130360	S	13	CTCTTAAAGCAATATACCAGTTCGTTCTCTTGGGAACCAGGCAAACAGAG					RVL9368 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62661384	ILMN_61819	LOC364313	XM_344338.2	XM_344338.2		364313	62661384	XM_344338.2	LOC364313	XP_344339.2	ILMN_1650303	0005290091	S	1	ATGCAGAAGGACAAGTGCCACATGCCTCCTCGGAGCCTGCTCTGTGTGCT					PREDICTED: Rattus norvegicus similar to T cell receptor V delta 6 (LOC364313), mRNA.					
Rattus norvegicus	RefSeq	GI_34876965-S	ILMN_54567	LOC290555	XM_214276.2	XM_214276.2		290555	34876965	XM_214276.2	LOC290555	XP_214276.1	ILMN_1372771	0006290524	S	246	GTGGCTGAACAGTTCGGGTGGACCGTCTACATAGTTATGGCTGGGTTTGC					PREDICTED: Rattus norvegicus similar to signal peptidase 12kDa (predicted) (LOC290555), mRNA.					
Rattus norvegicus	RefSeq	GI_40288194-S	ILMN_270286	GABRG3	NM_024370.3	NM_024370.3		79211	40288194	NM_024370.3	Gabrg3	NP_077346.3	ILMN_1354782	0003440368	S	1343	GTCTGGATGGCAAAGACTGCCAGAGCTTCTTCTGCTGCTATGAGGAGTGC	1	-	108189556-108189605	1q22	Rattus norvegicus gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3 (Gabrg3), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence TAS]; The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor [goid 7214] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]	Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IDA]; Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels [goid 4890] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648435	ILMN_68372	LOC502915	XM_580257.1	XM_580257.1		502915	62648435	XM_580257.1	LOC502915	XP_580257.1	ILMN_1650106	0000520239	S	191	ACACAGTAGTTAATGAGAGCAGGGTTAAGCTCACTCCGAGGCCCCTGGCC					PREDICTED: Rattus norvegicus LOC502915 (LOC502915), mRNA.					
Rattus norvegicus	RefSeq	GI_62639264-S	ILMN_69141	RGD1564357_PREDICTED	XM_577770.2	XM_577770.2		502306	109458328	XM_577770.2	RGD1564357_predicted	XP_577770.2	ILMN_1351622	0006200390	S	380	ATGGGAAGCCATGCGGGACTGGGGACAAGCTATTTATCCGGCGACTGTCC	1	-	79250650-79250699	1q21	PREDICTED: Rattus norvegicus RGD1564357 (predicted) (RGD1564357_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639224-S	ILMN_67129	ZNF626_PREDICTED	XM_341813.2	XM_341813.2		361529	62639224	XM_341813.2	Znf626_predicted	XP_341814.2	ILMN_1354555	0002630091	S	2087	CCGGAAGTAACGAATCCAATTCCGGTGTCGTGCGTGGGCACCGCGGAAAT					PREDICTED: Rattus norvegicus zinc finger protein 626 (predicted) (Znf626_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27714724	ILMN_58214	LOC298139	XM_216430.1	XM_216430.1		298139	27714724	XM_216430.1	LOC298139	XP_216430.1	ILMN_1649897	0001050338	S	802	CAGTTCCTGACTGGGAAGAGAAGTTCATGAGTGAGCCGAGGGGAGCTCAG				5q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310003M01 (LOC298139), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: diphosphate + H2O = 2 phosphate [goid 4427] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_19424189-S	ILMN_285705	CX3CR1	NM_133534.1	NM_133534.1		171056	19424189	NM_133534.1	Cx3cr1	NP_598218.1	ILMN_1355410	0001740500	S	1036	CGGCTTCTCAACAGAGTCCCAGAGGAGCAGGCAGGACAGCATTCTGAGCA	8	-	125033870-125033919	8q32	Rattus norvegicus chemokine (C-X3-C motif) receptor 1 (Cx3cr1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with chemokines, small chemoattractant molecules normally used to stimulate leukocytes, to initiate a change in cell activity [goid 4950] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Rbs11	Rbs11
Rattus norvegicus	RefSeq	GI_27681312-S	ILMN_290330	RGD1564983_PREDICTED	XM_001074580.1	XM_001074580.1		309208	109463533	XM_001074580.1	RGD1564983_predicted	XP_001074580.1	ILMN_1349572	0003060465	S	690	ACCCTCTGCGTGCGCTCCGAGTTTTCTCCTACGACCACAACCCAGTCACT				1q43	PREDICTED: Rattus norvegicus similar to leucine rich repeat containing 10 (predicted) (RGD1564983_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660349-S	ILMN_282709	RGD1311575_PREDICTED	XM_001076105.1	XM_001076105.1		289568	109500534	XM_001076105.1	RGD1311575_predicted	XP_001076105.1	ILMN_1352472	0000070736	S	3970	CTGGTAAAAGAGGTCACCAAGAGGTTCTCCACCCCAGATGCTGCCCCCGT				14p11	PREDICTED: Rattus norvegicus hypothetical LOC289568 (predicted) (RGD1311575_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577374-S	ILMN_268945	OLR43	NM_001000541.1	NM_001000541.1		365322	47577374	NM_001000541.1	Olr43	NP_001000541.1	ILMN_1348857	0003610397	S	804	CAGTTACCCAGCTCTGGCAGTTCTCATGGCTAACCTGCACTTCTTGGTGC	1	+	160209162-160209211	1q32	Rattus norvegicus olfactory receptor 43 (Olr43), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr43	Olr43
Rattus norvegicus	RefSeq	GI_62651041-S	ILMN_67246	RGD1566220_PREDICTED	XM_576072.2	XM_576072.2		500692	109478488	XM_576072.2	RGD1566220_predicted	XP_576072.2	ILMN_2039816	0001940221	S	2576	CCTTCAAGGGAACAAGGTCAGGGACACTTTCTTAGATGTGCTGCTCCTGG	6	-	107990233-107990282	6q31	PREDICTED: Rattus norvegicus similar to hypothetical MGC48595 (predicted) (RGD1566220_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655606-S	ILMN_61712	LOC304714	XM_222526.3	XM_222526.3		304714	62655606	XM_222526.3	LOC304714	XP_222526.3	ILMN_1356388	0003170332	S	2614	GAGCTTTAGCAGGAGGCCCAGTGAGTGGCAGCCCATTTTTGTGGGATGGA				10q11	PREDICTED: Rattus norvegicus similar to AL023001 protein (predicted) (LOC304714), mRNA.					
Rattus norvegicus	RefSeq	GI_62652202-S	ILMN_265997	RGD1561871_PREDICTED	XM_001081056.1	XM_001081056.1		299823	109482021	XM_001081056.1	RGD1561871_predicted	XP_001081056.1	ILMN_1354915	0006220671	S	86	TGCCCAAACACCCCGAACTGGCAGACAACCTTCACGTCATGAAGGCCATG				7q22	PREDICTED: Rattus norvegicus similar to ribosomal protein S10 (predicted) (RGD1561871_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653796-S	ILMN_270371	PIAS1_PREDICTED	XM_001074210.1	XM_001074210.1		300772	109484830	XM_001074210.1	Pias1_predicted	XP_001074210.1	ILMN_1355536	0002690280	S	1870	AAGCAGTAGTGGCAGCAACAGCAGCCTTGTGTCTTCCAACAGTCTGAGGG				8q24	PREDICTED: Rattus norvegicus protein inhibitor of activated STAT 1 (predicted) (Pias1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662639-S	ILMN_49876	LOC498629	XM_573910.1	XM_573910.1		498629	62662639	XM_573910.1	LOC498629	XP_573910.1	ILMN_1371944	0006110551	S	771	GACTGGACTCAGCTACATGAAGGAGTTTTCAAGTAGATCCCTCATGACTG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC498629), mRNA.					
Rattus norvegicus	RefSeq	GI_62658613-S	ILMN_271219	MOSPD3	NM_001025629.1	NM_001025629.1		288557	71043727	NM_001025629.1	Mospd3	NP_001020800.1	ILMN_1357346	0002690066	S	857	CTTCGCAGGCAGGGACCTAAGGCAGCCACTGTGATGTTTGCACCTTGCTC	12	-	19663245-19663294	12q12	Rattus norvegicus motile sperm domain containing 3 (Mospd3), mRNA.		The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116409	MGC116409
Rattus norvegicus	RefSeq	GI_62078488-S	ILMN_298569	RGD1307937	NM_001013877.1	NM_001013877.1		289865	62078488	NM_001013877.1	RGD1307937	NP_001013899.1	ILMN_1367407	0001410132	S	1972	ACCACCCGAGGGCGCTTGTACAACATTTTACAGGCATTGACTTGGGAAGC	14	+	110602092-110602141	14q22	Rattus norvegicus similar to hypothetical protein FLJ31438 (RGD1307937), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62638936-S	ILMN_51419	RGD1560671_PREDICTED	XM_574367.2	XM_574367.2		499083	109458202	XM_574367.2	RGD1560671_predicted	XP_574367.2	ILMN_1358944	0003360673	S	2367	GGACAAGGATAGGCCACATCAAGGCACTGGGACAAAGAGGCCCCATCCAG	1	-	73244317-73244366	1q21	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12895 (predicted) (RGD1560671_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660476-S	ILMN_50040	TLR10_PREDICTED	XM_223422.4	XM_223422.4		305355	109499688	XM_223422.4	Tlr10_predicted	XP_223422.4	ILMN_1362162	0004560025	S	2266	GAGTGGCCCAAGGACAGGCGCAAACATGGGCTTTTTTGGGCAAACCTTCG	14	+	46141726-46141775	14p11	PREDICTED: Rattus norvegicus toll-like receptor 10 (predicted) (Tlr10_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666649-S	ILMN_65110	LOC302573	XM_228795.3	XM_228795.3		302573	62666649	XM_228795.3	LOC302573	XP_228795.3	ILMN_1373806	0006350315	S	450	CCTCCAGTGGGTACCAGTGACAATATCCTCACATATAAACCTCCAGTGGG					PREDICTED: Rattus norvegicus similar to CG32602-PA (LOC302573), mRNA.					
Rattus norvegicus	RefSeq	GI_62659296-S	ILMN_269459	LOC681872	XM_001058779.1	XM_001058779.1		681872	109498594	XM_001058779.1	LOC681872	XP_001058779.1	ILMN_1363793	0002190706	S	429	CTACAACCAGCTGGAGGTCTCATCTGCTGCCCTTAAGTCTCTAGGAGAGC					PREDICTED: Rattus norvegicus similar to interleukin 19 (LOC681872), mRNA.					
Rattus norvegicus	RefSeq	GI_62655146-S	ILMN_68648	LOC363242	XM_347116.2	XM_347116.2		363242	62655146	XM_347116.2	LOC363242	XP_347117.1	ILMN_1359266	0002970286	S	396	GCATGGTGCCCTGTTTTGGGATCTGGCCCAACTCTTCTGGGACATCTATG					PREDICTED: Rattus norvegicus hypothetical LOC363242 (LOC363242), mRNA.					
Rattus norvegicus	RefSeq	GI_62653486-S	ILMN_282512	RGD1304554_PREDICTED	XM_001058524.1	XM_001058524.1		363043	109484488	XM_001058524.1	RGD1304554_predicted	XP_001058524.1	ILMN_1357654	0003190593	S	2	CCTGCTGCAAGAATTAGAAGATCCTCAATGGGGAATGAACCAAAGCTGGG				8q21	PREDICTED: Rattus norvegicus LOC363043 (predicted) (RGD1304554_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658060-S	ILMN_284795	BCL6_PREDICTED	XM_001055978.1	XM_001055978.1		303836	109494608	XM_001055978.1	Bcl6_predicted	XP_001055978.1	ILMN_1365663	0002970364	S	3053	CCTCACGGTGCCTTTTTACACGGAAGTTTTCAATGATGGACGGGTGTGGG				11q23	PREDICTED: Rattus norvegicus B-cell leukemia/lymphoma 6 (predicted) (Bcl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576522-S	ILMN_292651	OLR1627	NM_001000091.1	NM_001000091.1		290003	47576522	NM_001000091.1	Olr1627	NP_001000091.1	ILMN_1360771	0005050068	S	699	GGCCAAGGCCAGATCCACCCTAACTGCCCACATCACTGTAGTCACATTAT	15	+	26505264-26505313	15p14	Rattus norvegicus olfactory receptor 1627 (Olr1627), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1627	Olr1627
Rattus norvegicus	RefSeq	GI_62639228-S	ILMN_67303	LOC499111	XM_574406.1	XM_574406.1		499111	62639228	XM_574406.1	LOC499111	XP_574406.1	ILMN_1357323	0006100091	S	486	GCCTTACTGGGAGACCAACAGTACACAGTAGCCGTACAGGTTTGCACTCC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA C030039L03 (LOC499111), mRNA.					
Rattus norvegicus	RefSeq	GI_47578044-S	ILMN_287784	OLR104	NM_001000145.1	NM_001000145.1		293243	47578044	NM_001000145.1	Olr104	NP_001000145.1	ILMN_1366694	0000730647	S	574	CAGATCAACAGTGCCTATGGCCTCTTTGTGGTTCTCTCCACACTGGGTGT	1	-	161216441-161216490	1q32	Rattus norvegicus olfactory receptor 104 (Olr104), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr104	Olr104
Rattus norvegicus	RefSeq	GI_62650918-S	ILMN_278306	ZFYVE26_PREDICTED	XM_001080898.1	XM_001080898.1		314265	109479559	XM_001080898.1	Zfyve26_predicted	XP_001080898.1	ILMN_1350503	0004150603	S	7524	GGTCCGGGCCTATCTGACGTGTTGCAAGCTGCGTTCTGCCTACCTGATTG				6q24	PREDICTED: Rattus norvegicus zinc finger, FYVE domain containing 26 (predicted) (Zfyve26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658598-S	ILMN_281570	RGD1559588_PREDICTED	XM_001075881.1	XM_001075881.1		304349	109496776	XM_001075881.1	RGD1559588_predicted	XP_001075881.1	ILMN_1370700	0000450286	S	443	CTAGAGCTGGAACCAAACTCATCATTCATGCTCTCAGTACTACCATGGCG				12q11	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (predicted) (RGD1559588_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758455-S	ILMN_300666	IL5RA	NM_053645.1	NM_053645.1		114103	16758455	NM_053645.1	Il5ra	NP_446097.1	ILMN_1372052	0003850500	S	1065	CTGCAGAGTGTATCACCTATGGACAAGGTTGTTTCCACCAGTTCCGGCGC	4	-	142071293-142071334:142072318-142072325	4q41	Rattus norvegicus interleukin 5 receptor, alpha (Il5ra), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_47577178	ILMN_276677	OLR348	NM_001000757.1	NM_001000757.1		405030	47577178	NM_001000757.1	Olr348	NP_001000757.1	ILMN_1650735	0000610022	S	378	GCCCCTACACTATGCCACCACCATGACGACACGTGTATGTGTATGTATAG	1	+	216138959-216139008	1q43	Rattus norvegicus olfactory receptor 348 (Olr348), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr348	Olr348
Rattus norvegicus	RefSeq	GI_27688012-S	ILMN_294453	RGD1560301_PREDICTED	XR_008045.1	XR_008045.1		291278	109506001	XR_008045.1	RGD1560301_predicted		ILMN_1363874	0000380452	S	275	ATCCTGAAGAAATGGAGGAGAAGGATGCCTTGGGACTGAAGAGGGCAGCC				17q12.1	PREDICTED: Rattus norvegicus similar to isopentenyl-diphosphate delta isomerase 2 (predicted) (RGD1560301_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978526-S	ILMN_287716	AQP1	NM_012778.1	NM_012778.1		25240	6978526	NM_012778.1	Aqp1	NP_036910.1	ILMN_1358325	0004200333	S	2262	CCCTAGCAGGCACTATACTCACTTCACAGGTCAGGACACTGAGGACCCAT	4	+	84110162-84110211	4q24	Rattus norvegicus aquaporin 1 (Aqp1), mRNA.	Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence IDA]; The directed movement of water (H2O) into, out of, within or between cells [goid 6833] [evidence TAS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence TAS]; Transport systems of this type catalyze facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 15250] [evidence IDA]	CHIP28	CHIP28
Rattus norvegicus	RefSeq	GI_62654682-S	ILMN_69952	GUCA1B_PREDICTED	XM_236951.4	XM_236951.4		316218	109485762	XM_236951.4	Guca1b_predicted	XP_236951.4	ILMN_1352114	0004200750	S	623	TTCAGATGGATGTCAACCCCGGCGGCTGGATCACTCAGCAGAGGCGGAGA	9	-	9059029-9059078	9q12	PREDICTED: Rattus norvegicus guanylate cyclase activator 1B (predicted) (Guca1b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664424	ILMN_50474	LOC498867	XM_574152.1	XM_574152.1		498867	62664424	XM_574152.1	LOC498867	XP_574152.1	ILMN_1650676	0005290162	S	492	TCCGGAGCGGGAAACCCTTCCGCTCAAGTACACTCAAATACAGGGCAGGA					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498867), mRNA.					
Rattus norvegicus	RefSeq	GI_62643229-S	ILMN_284553	RGD1561467_PREDICTED	XR_007864.1	XR_007864.1		287708	109466420	XR_007864.1	RGD1561467_predicted		ILMN_1365648	0000060463	S	1176	GCTGGAGAGCAGACTCAGCAAGAACACCCAAGAACACCCACATCCAACCT				2q24	PREDICTED: Rattus norvegicus similar to Ras-related protein Rab-5C (RAB5L) (L1880) (predicted) (RGD1561467_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62665281-S	ILMN_271480	SF3B3_PREDICTED	XM_001077410.1	XM_001077410.1		292019	109508891	XM_001077410.1	Sf3b3_predicted	XP_001077410.1	ILMN_1359189	0003360463	S	4148	GTTGCTTTGTAAGGCGGAGGGAGACAGGCTAAGGTGTTGCAGTGTGGCTC				19q12	PREDICTED: Rattus norvegicus splicing factor 3b, subunit 3 (predicted) (Sf3b3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644585-S	ILMN_60424	LOC499733	XM_575068.1	XM_575068.1		499733	62644585	XM_575068.1	LOC499733	XP_575068.1	ILMN_1374190	0003360204	S	508	AGGGGACAACAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCC					PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC499733), mRNA.					
Rattus norvegicus	RefSeq	GI_62642744-S	ILMN_271523	SCAMP1	XM_001059643.1	XM_001059643.1		29521	109465820	XM_001059643.1	Scamp1	XP_001059643.1	ILMN_1371589	0006940056	S	1640	TGGCTTGCTTTATATGCGGTTCAGTCAGCAGAGAGGAGCCTGCGTGCTCT				2q12	PREDICTED: Rattus norvegicus secretory carrier membrane protein 1, transcript variant 2 (Scamp1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence ISS]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IDA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62665888-S	ILMN_48056	RGD1563351_PREDICTED	XM_238200.3	XM_238200.3		294350	109509359	XM_238200.3	RGD1563351_predicted	XP_238200.2	ILMN_1369162	0003190072	S	767	CAGAGGAGGAGCAGCTCTGGATGGGTCCGTGGAATAGCCTCCATATACCA	20	-	14505904-14505953	20p12	PREDICTED: Rattus norvegicus RGD1563351 (predicted) (RGD1563351_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576736-S	ILMN_271263	OLR1765	NM_001000489.1	NM_001000489.1		302821	47576736	NM_001000489.1	Olr1765	NP_001000489.1	ILMN_1361468	0001230609	S	771	TGCTATACCCACGGCAACTCAGGCCACAGTCCTAAACAAGGTCTTCTCAC	X	-	136235215-136235264	Xq36	Rattus norvegicus olfactory receptor 1765 (Olr1765), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1765; ratchrX-136309468-136308530_ORF	Olr1765; ratchrX-136309468-136308530_ORF
Rattus norvegicus	RefSeq	GI_62638779-S	ILMN_267030	LIX1_PREDICTED	XM_001053886.1	XM_001053886.1		292381	109460863	XM_001053886.1	Lix1_predicted	XP_001053886.1	ILMN_1359461	0006840706	S	647	TAGCCTCCACCAGGGGCACTTTAGACGATGCGGATGACCCCAGCACAAGT				1q12	PREDICTED: Rattus norvegicus limb expression 1 homolog (chicken) (predicted) (Lix1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641762-S	ILMN_57106	LTBP3	XM_341997.2	XM_341997.2		83838	62641762	XM_341997.2	Ltbp3	XP_341998.2	ILMN_1358820	0005050519	S	4123	GTGTGAACACCAGTGGCTCCTTCCGCTGTGTCTGCAAAGCTGGCTTCACC					PREDICTED: Rattus norvegicus latent transforming growth factor beta binding protein 3 (Ltbp3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence ISS]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667552-S	ILMN_268726	RGD1562076_PREDICTED	XM_001054902.1	XM_001054902.1		501664	109462308	XM_001054902.1	RGD1562076_predicted	XP_001054902.1	ILMN_1368783	0003870435	S	1542	CCCCCAGAGGCAAGGGTCTTCAGTGCTTGGTCCTCCTACTGGAACATCCA				Xq37	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810037C20 (predicted) (RGD1562076_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.12310	ILMN_268726	RGD1562076_PREDICTED	XM_001054902.1	XM_001054902.1		501664	109462308	XM_001054902.1	RGD1562076_predicted	XP_001054902.1	ILMN_1530460	0003360048	S	1836	GTTAATAAACTAATCTTTTGAAGTGAAATAAAGTATATTCAGATGTCCTC				Xq37	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810037C20 (predicted) (RGD1562076_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090631-S	ILMN_264323	ATP5S	NM_001007749.1	NM_001007749.1		362749	56090631	NM_001007749.1	Atp5s	NP_001007750.1	ILMN_1365758	0002190037	S	1758	CCGCTGTTAGCTGTGTGCTGTAGCCGTGTAGGCTTCTGGATGTCTGGCTG	6	+	91799386-91799435	6q24	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B) (Atp5s), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins [goid 45263] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]	Catalysis of the transfer of hydrogen ions from one side of a membrane to the other [goid 15078] [evidence IEA]	MGC94488	MGC94488
Rattus norvegicus	RefSeq	GI_47577836-S	ILMN_279769	OLR1203	NM_001001082.1	NM_001001082.1		405972	47577836	NM_001001082.1	Olr1203	NP_001001082.1	ILMN_1358884	0001580400	S	471	TCTGGAAGCCATCACACATACTGGCAACATGCTAAGCCTGACCTTCTGTG	8	+	39345975-39346024	8q21	Rattus norvegicus olfactory receptor 1203 (Olr1203), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1203	Olr1203
Rattus norvegicus	RefSeq	GI_40018585-S	ILMN_63433	FLVCR2	NM_199109.2	NM_199109.2		314323	75832142	NM_199109.2	Flvcr2	NP_954540.2	ILMN_1361794	0007000121	S	1675	CGTGTCAGCACAGGTATTCGGGATCATCTTCACCATCTCCCAAGGCCAGA	6	+	109924119-109924122:109931484-109931529	6q31	Rattus norvegicus feline leukemia virus subgroup C cellular receptor family, member 2 (Flvcr2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]	MGC124539	MGC124539
Rattus norvegicus	RefSeq	GI_62653794-S	ILMN_48024	CLN6_PREDICTED	XM_236325.3	XM_236325.3		315746	62653794	XM_236325.3	Cln6_predicted	XP_236325.3	ILMN_1355138	0000130575	S	2113	CCGTGCGAGACTACTAGGGAGCCGAGGTCAAGGGAGCAGAGGATGACAGC				8q24	PREDICTED: Rattus norvegicus ceroid-lipofuscinosis, neuronal 6 (predicted) (Cln6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658167-S	ILMN_53947	PSARL_PREDICTED	XM_221297.3	XM_221297.3		287979	62658167	XM_221297.3	Psarl_predicted	XP_221297.3	ILMN_1372012	0002370519	S	2597	CTACTTTCTCATTCTGCTTGGACTTTTCAGCCTGTGTTGGGGGAGGGACC				11q23	PREDICTED: Rattus norvegicus presenilin associated, rhomboid-like (predicted) (Psarl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576728-S	ILMN_267091	OLR840	NM_001000414.1	NM_001000414.1		298733	47576728	NM_001000414.1	Olr840	NP_001000414.1	ILMN_1373987	0002760601	S	436	GCCGCCGGCTCCTGGGCAGGTGGTATCACCAATTCTGTAGTTCAGACATC	5	+	60315982-60316031	5q22	Rattus norvegicus olfactory receptor 840 (Olr840), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr840	Olr840
Rattus norvegicus	RefSeq	GI_24233540-S	ILMN_295869	COX5A	NM_145783.1	NM_145783.1		252934	24233540	NM_145783.1	Cox5a	NP_665726.1	ILMN_1357173	0003990068	S	163	CGCTGGGTGACATACTTCAACAAGCCAGACATTGATGCCTGGGAGTTGCG	8	+	61272867-61272916	8q24	Rattus norvegicus cytochrome c oxidase, subunit Va (Cox5a), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_59676560-S	ILMN_68431	RWDD1	NM_147146.2	NM_147146.2		259218	59676560	NM_147146.2	Rwdd1	NP_671487.1	ILMN_1358613	0001500121	S	819	CCTGACTACAATCCTGTTGCCCCAGGGAGTGACTCCTCAGACTGATGGAC					Rattus norvegicus RWD domain containing 1 (Rwdd1), mRNA.				sarip	sarip
Rattus norvegicus	RefSeq	GI_62667143	ILMN_284998	RGD1561958_PREDICTED	XM_001061930.1	XM_001061930.1		363490	109512241	XM_001061930.1	RGD1561958_predicted	XP_001061930.1	ILMN_1649724	0002060746	S	679	CCAAGCTTTGATTTTTCCACAACTGGGGTCCCAAGAGCAGCGTATCCTCC				Xq32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010106E10 (predicted) (RGD1561958_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13591994-S	ILMN_301390	MMP14	NM_031056.1	NM_031056.1		81707	13591994	NM_031056.1	Mmp14	NP_112318.1	ILMN_1365885	0005420180	S	2217	GACCTTACAGGCAAAGGCCAAATGGGGTCATCTGCTTCTCTTCCATCCCC	15	+	32502846-32502895	15p13	Rattus norvegicus matrix metallopeptidase 14 (membrane-inserted) (Mmp14), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEP]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence IEP]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IDA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The proteolytic processing of an inactive enzyme to an active form [goid 31638] [evidence ISS]; The proteolytic processing of an inactive enzyme to an active form [goid 31638] [evidence IEA]; The orderly movement of astrocytes, class of large neuroglial (macroglial) cells in the central nervous system, the largest and most numerous neuroglial cells in the brain and spinal cord [goid 43615] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51895] [evidence IDA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Increases the activity of a protease, any enzyme catalyzes the hydrolysis peptide bonds [goid 16504] [evidence IMP]	Mt1-mmp	Mt1-mmp
Rattus norvegicus	RefSeq	GI_62660135-S	ILMN_291912	MRPS18C_PREDICTED	XM_001067441.1	XM_001067441.1		289469	109500315	XM_001067441.1	Mrps18c_predicted	XP_001067441.1	ILMN_1368251	0007040551	S	61	AAGAACTTGACAACCGCGACTGGCTGCTTCACGGATCGCGCAACTCACGC				14p22	PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S18C (predicted) (Mrps18c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638754-S	ILMN_263245	RGD1561339_PREDICTED	XM_577732.1	XM_577732.1		502271	62638754	XM_577732.1	RGD1561339_predicted	XP_577732.1	ILMN_1362827	0006450286	S	1406	TCCGGCACAGAGGTTTTAAGGGGTGGACCAGGAATATAGCAAATGCCCTT	1	+	52545623-52545672	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1561339_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663827-S	ILMN_48658	LOC364724	XM_577578.1	XM_577578.1		364724	62663827	XM_577578.1	LOC364724	XP_577578.1	ILMN_1357123	0000070731	S	3	ACGATTGCTATCCTCCCCCGGCCCGAAGAGAAGGGCTCCAAGAAGGCCGT				17q11	PREDICTED: Rattus norvegicus similar to H2B histone family, member S (LOC364724), mRNA.					
Rattus norvegicus	RefSeq	GI_62653387-S	ILMN_50281	ANKRD49_PREDICTED	XM_235833.4	XM_235833.4		315434	109483063	XM_235833.4	Ankrd49_predicted	XP_235833.1	ILMN_1359617	0006860279	S	699	GCTGGGAACAGAGACAGCAGAGACACCCTGGAACTCCTCCTGATGAATCG	8	-	11584154-11584203	8q11	PREDICTED: Rattus norvegicus ankyrin repeat domain 49 (predicted) (Ankrd49_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57164024-S	ILMN_298054	MGC72612	NM_001009538.1	NM_001009538.1		494340	57164024	NM_001009538.1	MGC72612	NP_001009538.1	ILMN_1373226	0002900161	S	1857	CGAGGGAGAAGTAATGCAGAAGAAAGGCCAGAAAAGAGGGACCATCAGCC	16	+	20265250-20265299	16p14	Rattus norvegicus similar to expressed sequence AI449175 (MGC72612), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105514	MGC105514
Rattus norvegicus	RefSeq	GI_62658045-S	ILMN_68226	LOC498101	XM_579784.1	XM_579784.1		498101	62658045	XM_579784.1	LOC498101	XP_579784.1	ILMN_1374567	0006660537	S	752	GAATCTCAGACCCAGGCAACTGTCCCATCCTCACCAGGCAACTGCAACGC					PREDICTED: Rattus norvegicus LOC498101 (LOC498101), mRNA.					
Rattus norvegicus	RefSeq	GI_62642893-S	ILMN_279573	KIF2	XM_001065173.1	XM_001065173.1		84391	109465910	XM_001065173.1	Kif2	XP_001065173.1	ILMN_1349868	0007050348	S	2206	CAAGCCAGCAAGCAGATTAACCCCAAGAGACCCCGAGCCCTCTAAGTTGG				2q14	PREDICTED: Rattus norvegicus kinesin heavy chain family, member 2, transcript variant 2 (Kif2), mRNA.					
Rattus norvegicus	RefSeq	GI_28866949-S	ILMN_289911	KCNMB2	NM_176861.1	NM_176861.1		294961	28866949	NM_176861.1	Kcnmb2	NP_789831.1	ILMN_1355562	0004540463	S	585	GCTGTTCCATTCTCTCTTCTGGCCAACGTGTATGATGGCTGGGGGTGTGG	2	+	118401252-118401301	2q25	Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M, beta member 2 (Kcnmb2), mRNA.	A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence ISS]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal [goid 5513] [evidence ISS]; The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal [goid 5513] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence ISS]; The process that modulates the membrane potential involved in the propagation of a signal in a neuron [goid 19228] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence ISS]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]	Kcmb2	Kcmb2
Rattus norvegicus	RefSeq	GI_62641164-S	ILMN_49755	LOC499247	XM_574540.1	XM_574540.1		499247	62641164	XM_574540.1	LOC499247	XP_574540.1	ILMN_1367535	0004230471	S	1863	GGAAGAGGGAAGAAGTGGGGCTATGGGAATATTGACCAGTATAACTGTGC					PREDICTED: Rattus norvegicus similar to male sterility domain containing 2 (LOC499247), mRNA.					
Rattus norvegicus	RefSeq	GI_62667064-S	ILMN_269333	RGD1564117_PREDICTED	XM_001070369.1	XM_001070369.1		317253	109512077	XM_001070369.1	RGD1564117_predicted	XP_001070369.1	ILMN_1356466	0006660010	S	2202	GGTGAGAGCCCTGCCTGAAAGAATCAGCCTCCAGAGCCAGGAAGAAGCTG				Xq31	PREDICTED: Rattus norvegicus similar to novel protein similar to multidomain presynaptic cytomatrix protein piccolo (presynaptic cytomatrix protein) (predicted) (RGD1564117_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113830	ILMN_279879	V1RL1_PREDICTED	XM_001063608.1	XM_001063608.1		365190	109461008	XM_001063608.1	V1rl1_predicted	XP_001063608.1	ILMN_1650045	0001410647	S	464	GCCCTAAGTGATACAATATGTCTGGTCATCAGGGCCTTGGCCAGTGGCTC				1q21	PREDICTED: Rattus norvegicus vomeronasal 1 receptor, L1 (predicted) (V1rl1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667369	ILMN_58623	RGD1562693_PREDICTED	XM_346355.3	XM_346355.3		367930	109511195	XM_346355.3	RGD1562693_predicted	XP_346356.3	ILMN_1650040	0003190538	S	741	GCCGTGGTAGAGCAGAGGAACCTGAGTGGGAGGCAAAGAAAGAGAAACAC	X	+	135121078-135121127	Xq35	PREDICTED: Rattus norvegicus similar to RNA binding motif protein, X-linked 2 (predicted) (RGD1562693_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666738-S	ILMN_272423	RGD1563131_PREDICTED	XR_008488.1	XR_008488.1		317420	109511668	XR_008488.1	RGD1563131_predicted		ILMN_1365321	0000510717	S	5012	GTCAGTACAATCCCGTAGGCGCCGCAAGCTATCCAGTACAGTGGGTTGGG				Xq21	PREDICTED: Rattus norvegicus similar to Serine/threonine-protein kinase WNK3 (Protein kinase, lysine-deficient 3) (predicted) (RGD1563131_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666932	ILMN_301855	RGD1563322_PREDICTED	XR_008286.1	XR_008286.1		501579	109511986	XR_008286.1	RGD1563322_predicted		ILMN_1651108	0005570280	S	1494	CATGGAGCGTGTGCGGAAATGGGACTTTGAGGTGGTGTATGTGACTGAAC				Xq31	PREDICTED: Rattus norvegicus similar to heat shock protein 1, beta (predicted) (RGD1563322_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641085-S	ILMN_68871	DCHS1_PREDICTED	XM_219128.4	XM_219128.4		308912	109459193	XM_219128.4	Dchs1_predicted	XP_219128.4	ILMN_1351014	0000870154	S	10041	TCACAGAGATTGCTCGGCTCAAGGATGAAGCCCGTCCATGTCCTCCCGCT	1	-	163498120-163498169	1q33	PREDICTED: Rattus norvegicus dachsous 1 (Drosophila) (predicted) (Dchs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647808-S	ILMN_269858	RGD1562910_PREDICTED	XM_001073866.1	XM_001073866.1		502857	109473812	XM_001073866.1	RGD1562910_predicted	XP_001073866.1	ILMN_1351380	0001780484	S	679	TCCAACAGCTCAGAGGGCAACGTCCGGAATGAAGACGCTGAGGCAGGAGT				4q34	PREDICTED: Rattus norvegicus similar to Not homeodomain protein (predicted) (RGD1562910_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652585-S	ILMN_53308	LOC300013	XM_238510.2	XM_238510.2		300013	62652585	XM_238510.2	LOC300013	XP_238510.1	ILMN_1366593	0004540286	S	429	GCCAGACTCCTTGTGTGGCTTAGGCTGCCCTCTGCTGGAAGTTCTGGGAA					PREDICTED: Rattus norvegicus hypothetical LOC300013 (LOC300013), mRNA.					
Rattus norvegicus	Unigene	Rn.28828	ILMN_161183	RN.28828	Rn.28828		Rn.28828		18191127	BM391074			ILMN_1530188	0002470095	S	13	TTTTTTCCTTCAGTAACAGTTTATTTTCATATTGGGAAAGGAACTGGGTG					UI-R-CN1-cjr-b-22-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone UI-R-CN1-cjr-b-22-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62652468-S	ILMN_47928	TATDN1_PREDICTED	XM_343247.2	XM_343247.2		362917	62652468	XM_343247.2	Tatdn1_predicted	XP_343248.2	ILMN_1356311	0004760053	S	676	GGCCACAGACGTTAGGAAACAGGTGTAAGGTTACCCCGAGTGGTAAGGAT					PREDICTED: Rattus norvegicus TatD DNase domain containing 1 (predicted) (Tatdn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647653-S	ILMN_265040	RGD1304792_PREDICTED	XM_001071756.1	XM_001071756.1		312474	109473757	XM_001071756.1	RGD1304792_predicted	XP_001071756.1	ILMN_1361946	0006180465	S	2398	CACCGTGGCTGTGTGGAAAGCTTCCTGCTGCTGTGTGTCTGAGGGAAGTA				4q34	PREDICTED: Rattus norvegicus similar to chromosome 2 open reading frame 3; transcription factor 9 (binds GC-rich sequences) (predicted) (RGD1304792_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650972-S	ILMN_63547	LOC503037	XM_578558.1	XM_578558.1		503037	62650972	XM_578558.1	LOC503037	XP_578558.1	ILMN_1351160	0003610110	S	396	GATGCCAGCTGTGTCTTTGGCATGGGCACAAAAGAGATACAGAGCCATGG				6q24	PREDICTED: Rattus norvegicus similar to Ornithine decarboxylase (ODC) (LOC503037), mRNA.					
Rattus norvegicus	RefSeq	GI_17158026-S	ILMN_300099	SOCS2	NM_058208.1	NM_058208.1		84607	17158026	NM_058208.1	Socs2	NP_478115.1	ILMN_1366418	0000050047	S	636	AGGCCCTGAAGCCCCCCGGAATGGGACTGTTCACCTTTACCTGACCAAAC	7	-	32605950-32605999	7q13	Rattus norvegicus suppressor of cytokine signaling 2 (Socs2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of neuron differentiation [goid 45666] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with the growth hormone receptor [goid 5131] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Cish2; Socs-2	Cish2; Socs-2
Rattus norvegicus	RefSeq	GI_21728399-S	ILMN_264129	GGTA1	NM_145674.1	NM_145674.1		246766	21728399	NM_145674.1	Ggta1	NP_663707.1	ILMN_1371796	0001690452	S	1067	TCGGAGAGGGGGATTTTTACTACCACGCGGCCGTTTTTGGAGGAACGCCC	3	-	14485359-14485408	3p11	Rattus norvegicus glycoprotein galactosyltransferase alpha 1, 3 (Ggta1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978846-S	ILMN_301635	FMO1	NM_012792.1	NM_012792.1		25256	6978846	NM_012792.1	Fmo1	NP_036924.1	ILMN_1366651	0003360279	S	1859	ATGTTGGAAGGATCCAGGCCCCCTTTCAGGAAGAATCTGCCCCCAGAGAG	13	-	78503903-78503952	13q22	Rattus norvegicus flavin containing monooxygenase 1 (Fmo1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31227] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IDA]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IDA]; Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O [goid 4499] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]	RFMO1A	RFMO1A
Rattus norvegicus	RefSeq	GI_62657116-S	ILMN_66433	LOC501724	XM_580229.1	XM_580229.1		501724	62657116	XM_580229.1	LOC501724	XP_580229.1	ILMN_1365400	0000540731	S	335	CAAAGCACAGCAGGGATATATACCAGGAAGTGAGCATAACCGAGGCCACC					PREDICTED: Rattus norvegicus LOC501724 (LOC501724), mRNA.					
Rattus norvegicus	RefSeq	GI_62656317-S	ILMN_262388	SENP3	XM_001078673.1	XM_001078673.1		303245	109491057	XM_001078673.1	Senp3	XP_001078673.1	ILMN_1348804	0000510458	S	2142	CATGTTCTGAGGGCAGGAAAGCAGTGTGGGGGTGGTGGGCACAAAGGGAT				10q24	PREDICTED: Rattus norvegicus SUMO/sentrin specific peptidase 3, transcript variant 1 (Senp3), mRNA.	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification [goid 19538] [evidence ISS]	Catalysis of the hydrolysis of various forms of polymeric ubiquitin sequences. Will remove ubiquitin from larger leaving groups [goid 4843] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644438-S	ILMN_53044	LOC502599	XM_578086.1	XM_578086.1		502599	62644438	XM_578086.1	LOC502599	XP_578086.1	ILMN_1353297	0001340035	S	593	CATCAGGAATCGATCTTGTGAAGCCCAGAAGGACTGAACACCCCCACCAC				2q43	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (LOC502599), mRNA.					
Rattus norvegicus	RefSeq	GI_62648841-S	ILMN_294936	LOC500445	NM_001024343.1	NM_001024343.1		500445	66730470	NM_001024343.1	LOC500445	NP_001019514.1	ILMN_1368281	0005720019	S	1071	GGGCCCCATGGCTACTCCCACAACTGCTTTGAAACTGTCTACAATGTGTG	5	-	59348169-59348218	5q22	Rattus norvegicus similar to hypothetical protein 4931430D02 (LOC500445), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_62641609-S	ILMN_48934	LOC293623	XM_215119.3	XM_215119.3		293623	62641609	XM_215119.3	LOC293623	XP_215119.3	ILMN_1349644	0000940014	S	1782	TCGAGCGGTGGTACGGCCCAGGCTTTCTGCATTTGGGTTGAGTTGGCTCT				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2400009B11 gene (predicted) (LOC293623), mRNA.					
Rattus norvegicus	RefSeq	GI_62662256-S	ILMN_58511	RGD1564954_PREDICTED	XM_573865.2	XM_573865.2		498589	109503095	XM_573865.2	RGD1564954_predicted	XP_573865.1	ILMN_1366812	0006980148	S	380	CGGCTGTCCAATGCCAATGCTCTAAAATGGATGTCGCTGTCACCTCTACC	16	-	11497439-11497488	16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1564954_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662254-S	ILMN_58511	RGD1564954_PREDICTED	XM_573865.2	XM_573865.2		498589	109503095	XM_573865.2	RGD1564954_predicted	XP_573865.1	ILMN_1351979	0003120348	S	134	GATCATCGACCAAGACCAGTCAAAGCCAGGAGCACACAGACAAGGATGAG	16	-	11498311-11498317:11498445-11498487	16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1564954_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663560-S	ILMN_269774	DCDC2_PREDICTED	XM_001070222.1	XM_001070222.1		291130	109505766	XM_001070222.1	Dcdc2_predicted	XP_001070222.1	ILMN_1358856	0000730059	S	1270	ATGAACGGTGAGGCTGAAGACAGAGCGGGGAGTAAAGTAGCCGATGCCCC				17p11	PREDICTED: Rattus norvegicus doublecortin domain containing 2 (predicted) (Dcdc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642726-S	ILMN_58200	LOC499506	XM_574831.2	XM_574831.2		499506	109464213	XM_574831.2	LOC499506	XP_574831.1	ILMN_1350069	0005420315	S	2688	GACAGAGCAAGTGAGGTTCTCAGGGGCTGCTAATTCTGCATCAGAATGGC	2	+	22678368-22678417	2q12	PREDICTED: Rattus norvegicus similar to cytosolic phosphoprotein DP58 (LOC499506), mRNA.					
Rattus norvegicus	RefSeq	GI_62662583-S	ILMN_63578	CLCN3	XM_341428.2	XM_341428.2		84360	62662583	XM_341428.2	Clcn3	XP_341429.2	ILMN_1350560	0001690520	S	3334	GCAGGTACGCATGGAGGTATGAACAAAGGCCCCAGCTTGTGTGCCATGTG				16p12	PREDICTED: Rattus norvegicus chloride channel 3 (Clcn3), mRNA.	Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IDA]; The lipid bilayer surrounding an early endosome [goid 31901] [evidence IEA]; The lipid bilayer surrounding a late endosome [goid 31902] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The lipid bilayer surrounding any membrane-bounded vesicle in the cell [goid 12506] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IDA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5254] [evidence IDA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_49170000-S	ILMN_263559	RT1-T24-2	NR_002151.1	NR_002151.1		415057	49170000	NR_002151.1	RT1-T24-2		ILMN_1368348	0005860020	S	4052	AAGCAAGCATACAGTTCACAGAAGCAGGCAGGTTGCTGGGGAGACAGCTC	20	-	2880496-2880545	20p12	Rattus norvegicus RT1 class I, T24, gene 2 (RT1-T24-2), non-coding RNA.					
Rattus norvegicus	RefSeq	GI_62718143-S	ILMN_280839	LOC292603	XR_008185.1	XR_008185.1		292603	109461018	XR_008185.1	LOC292603		ILMN_1349630	0002940270	S	1469	GTACCGGTTCCAGTGCCAGTGCCAGTGCCAGTGCCAGTACCTGTACCTGA					PREDICTED: Rattus norvegicus similar to SH3-binding kinase (LOC292603), mRNA.					
Rattus norvegicus	RefSeq	GI_62658823-S	ILMN_50122	RGD1566191_PREDICTED	XM_222168.4	XM_222168.4		304458	109495850	XM_222168.4	RGD1566191_predicted	XP_222168.4	ILMN_1370744	0000540301	S	1196	GGGTGAGCCACGAGGACCAGTGGGCAGTGCAAGAGGAAATTGAGCAGGAT	12	-	32078428-32078477	12q14	PREDICTED: Rattus norvegicus similar to KIAA1786 protein (predicted) (RGD1566191_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57222323-S	ILMN_264684	LY49SI2	NM_001009498.1	NM_001009498.1		494207	57222323	NM_001009498.1	Ly49si2	NP_001009498.1	ILMN_1370629	0002120427	S	374	GATGGTACCGTGAAACTAAGACTGTTATACCTTCCTTTCAGCACACAGGC	4	-	167570280-167570282:167571487-167571533	4q42	Rattus norvegicus immunoreceptor Ly49si2 (Ly49si2), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667043-S	ILMN_63504	GDPD2_PREDICTED	XM_228566.4	XM_228566.4		302421	109510904	XM_228566.4	Gdpd2_predicted	XP_228566.4	ILMN_1366509	0004150181	S	1367	GGATGAAGACCGTGCTACTGTGCAACAACGGGCTCCCAGAATGCGCCAGA	X	+	88751139-88751188	Xq31	PREDICTED: Rattus norvegicus glycerophosphodiester phosphodiesterase domain containing 2 (predicted) (Gdpd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649108-S	ILMN_57671	LOC500477	XM_575843.1	XM_575843.1		500477	62649108	XM_575843.1	LOC500477	XP_575843.1	ILMN_1354233	0000730142	S	720	AGAGCTAGATAAGTGGGGACTGTTTACCAGCCCTTCCACTGGAGACTCAC					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500477), mRNA.					
Rattus norvegicus	RefSeq	GI_12083602-S	ILMN_290788	SCT	NM_022670.1	NM_022670.1		24769	12083602	NM_022670.1	Sct	NP_073161.1	ILMN_1372135	0001050095	S	196	GCTGCAGGGTCTGGTGGGGAAGCGCAGCGAGGAGGACACAGAAAATATTC	1	-	201472547-201472570:201472676-201472701	1q41	Rattus norvegicus secretin (Sct), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Secr	Secr
Rattus norvegicus	RefSeq	GI_62642132-S	ILMN_50425	LOC293882	XM_219773.3	XM_219773.3		293882	62642132	XM_219773.3	LOC293882	XP_219773.3	ILMN_1359552	0006100541	S	4427	AGCTCCCAGGCTTCTCCTGCACATTTGGGACCTTTAAGTGACTTGTCACC				1q52	PREDICTED: Rattus norvegicus similar to Zinc finger protein GLIS3 (GLI-similar 3) (LOC293882), mRNA.					
Rattus norvegicus	RefSeq	GI_62653611-S	ILMN_296103	RGD1562835_PREDICTED	XR_008581.1	XR_008581.1		367077	109484646	XR_008581.1	RGD1562835_predicted		ILMN_1369982	0003290722	S	323	CATAGCATGAGCGTCAGGAATCGATCTCGTGAGGCCTGGAAGGACCGAAC				8q22	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (predicted) (RGD1562835_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651933-S	ILMN_269720	LOC687055	XM_001076884.1	XM_001076884.1		687055	109481605	XM_001076884.1	LOC687055	XP_001076884.1	ILMN_1365843	0004780315	S	530	ACCCGGTGGCACGGTACTTCGGGATCAAGCGAGGGCAGGTTGTGAAGATT					PREDICTED: Rattus norvegicus similar to DNA-directed RNA polymerase II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1) (LOC687055), mRNA.					
Rattus norvegicus	RefSeq	GI_47577446-S	ILMN_299084	OLR690	NM_001000569.1	NM_001000569.1		366111	47577446	NM_001000569.1	Olr690	NP_001000569.1	ILMN_1374504	0002630347	S	407	CCCTGAGGCTCTGTGGTACTCTAGTGGGAGTGGCTTGGGCAGGAGGATTT	3	-	73590428-73590477	3q24	Rattus norvegicus olfactory receptor 690 (Olr690), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr690	Olr690
Rattus norvegicus	RefSeq	GI_62659650-S	ILMN_263192	FMO13_PREDICTED	XM_001075840.1	XM_001075840.1		289193	109498977	XM_001075840.1	Fmo13_predicted	XP_001075840.1	ILMN_1354943	0001770433	S	1394	GTACCCCATACCAGTACCGTCTACAAGGGCCAGGGAAATGGGCAGGGGCT				13q23	PREDICTED: Rattus norvegicus flavin-containing monooxygenase 13 (predicted) (Fmo13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639126-S	ILMN_61945	LOC499093	XM_574384.1	XM_574384.1		499093	62639126	XM_574384.1	LOC499093	XP_574384.1	ILMN_1371741	0004730458	S	2442	CACCTCAGAGAAGAGCCTGAGAACGCCCAGGTGGAAGACAGCTTTTACCG				1q21	PREDICTED: Rattus norvegicus similar to Zfp93 protein (LOC499093), mRNA.					
Rattus norvegicus	RefSeq	GI_34854694-S	ILMN_276484	RGD1309610_PREDICTED	XM_001068559.1	XM_001068559.1		362136	109469939	XM_001068559.1	RGD1309610_predicted	XP_001068559.1	ILMN_1364477	0000610161	S	273	TCCCAGCAACAGTTCACACAGCACATCAAAAGCCCACACCTGCTCTGGAG				3q21	PREDICTED: Rattus norvegicus LOC362136 (predicted) (RGD1309610_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_31795571-S	ILMN_272188	LOC299271	NM_181630.2	NM_181630.2		299271	31795571	NM_181630.2	LOC299271	NP_853661.1	ILMN_1356761	0002340524	S	1301	GGAGCTGACTGTGAATGAGGACGGAGAGGAAAAGGATGAGTCCCAGCCCG	6	-	127932667-127932716	6q32	Rattus norvegicus serine proteinase inhibitor HongrES1 (LOC299271), mRNA.			Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62660887-S	ILMN_268363	PAPOLG_PREDICTED	XM_001057584.1	XM_001057584.1		305586	109501059	XM_001057584.1	Papolg_predicted	XP_001057584.1	ILMN_1349742	0006520154	S	3339	AGTAACTCAGCATGACAGCCCCTCACCATAATTCCCACAGTTGCCAACAG				14q22	PREDICTED: Rattus norvegicus poly(A) polymerase gamma (predicted), transcript variant 3 (Papolg_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656428-S	ILMN_282358	RGD1563169_PREDICTED	XM_343897.2	XM_343897.2		363602	62656428	XM_343897.2	RGD1563169_predicted	XP_343898.2	ILMN_1351066	0001570086	S	138	ATTGAGCAAGGCCAGCCCAGGCCACACAGACCAGGTGGAGAATGCTTCTG	10	-	41623725-41623741:41623868-41623900	10q22	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1563169_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57114253-S	ILMN_274521	V1RG10	NM_001008940.1	NM_001008940.1		494287	57114253	NM_001008940.1	V1rg10	NP_001008940.1	ILMN_1370185	0000450132	S	514	TACAGGTTGAGTTATGGATACTGCTCATTGTTTGCTTCTGGCAGTGTGGT	1	+	71756385-71756434	1q21	Rattus norvegicus vomeronasal 1 receptor, G10 (V1rg10), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641928-S	ILMN_65577	LOC293871	XM_219758.3	XM_219758.3		293871	62641928	XM_219758.3	LOC293871	XP_219758.3	ILMN_1358167	0006940041	S	1492	TACAGTCAACTGTCGGTGACAACAGGACACAACCTCAGATCAGTGGTGCC				1q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410127L17 (predicted) (LOC293871), mRNA.					
Rattus norvegicus	RefSeq	GI_8392973-S	ILMN_297004	BCL2	NM_016993.1	NM_016993.1		24224	8392973	NM_016993.1	Bcl2	NP_058689.1	ILMN_1366150	0001580273	S	792	CCAGGATAACGGAGGCTGGGATGCCTTTGTGGAACTATATGGCCCCAGCA	13	-	12731073-12731102:12904297-12904316	13p13	Rattus norvegicus B-cell CLL/lymphoma 2 (Bcl2), nuclear gene encoding mitochondrial protein, mRNA.	A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IEA]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin [goid 5955] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence ISS]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence ISS]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus [goid 1101] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IEP]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence ISS]; The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; An acute behavioral change resulting from a perceived external threat [goid 1662] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process of regulating the proliferation and elimination of cells of the immune system such that the total number of cells of a particular cell type within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1776] [evidence ISS]; The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1782] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 2260] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a lymphoid progenitor cell. Lymphoid progenitor cells include progenitor cells for any of the lymphoid lineages [goid 2320] [evidence ISS]; The process whereby a lymphoid progenitor cell becomes committed to become any type of B cell [goid 2326] [evidence ISS]; The process by which a lymphoid progenitor cell becomes committed to becoming any type of T cell [goid 2360] [evidence ISS]; The process whose specific outcome is the progression of an organismal system whose objective is to provide calibrated responses by an organism to a potential internal or invasive threat, over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process [goid 2520] [evidence ISS]; A organ system process carried out by any of the organs or tissues of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism [goid 3014] [evidence ISS]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence ISS]; The chemical reactions and pathways involving melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 6582] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; Any process that modulates the frequency, rate or extent of nitrogen utilization [goid 6808] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus [goid 9605] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus [goid 10039] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus [goid 10044] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 10559] [evidence ISS]; The process aimed at the progression of a mesenchymal cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14031] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neuron maturation [goid 14042] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration [goid 14911] [evidence ISS]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine [goid 18105] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; The process whose specific outcome is the progression of the cochlear nucleus over time, from its formation to the mature structure [goid 21747] [evidence ISS]; The process by which the anatomical structures of a gland are generated and organized. Morphogenesis pertains to the creation of form [goid 22612] [evidence ISS]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell migration [goid 30336] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them [goid 31000] [evidence IEP]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The regrowth of axons following their loss or damage [goid 31103] [evidence ISS]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]; The progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney [goid 32835] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a process that reduces the internal pH of a cell [goid 32848] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a process that reduces the internal pH of a cell [goid 32848] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptosis [goid 33033] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus [goid 33077] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of osteoblast proliferation [goid 33689] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell [goid 40007] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40018] [evidence ISS]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence IEA]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes [goid 43067] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; The process by which an immature T cell becomes committed to becoming a CD8-positive, alpha-beta T cell [goid 43375] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer [goid 43496] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer [goid 43496] [evidence ISS]; Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer [goid 43497] [evidence IEA]; Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer [goid 43497] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IEA]; The process whose specific outcome is the progression of the ear over time, from its formation to the mature structure. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals [goid 43583] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that modulates the frequency, rate or extent of viral genome replication [goid 45069] [evidence ISS]; Any process that modulates the frequency, rate or extent of viral genome replication [goid 45069] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of melanocyte differentiation [goid 45636] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death that occurs in the retina [goid 46671] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane [goid 46902] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; Any process that modulates the frequency, rate or extent of the deposition of coloring matter occurring during development [goid 48070] [evidence ISS]; Any process that activates or increases the deposition of coloring matter occurring during development [goid 48087] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components [goid 48538] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence ISS]; The process by which the anatomical structures of the gut are generated and organized. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48547] [evidence ISS]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence ISS]; The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 48599] [evidence ISS]; Any process that activates, maintains or increases the rate of skeletal muscle fiber development. Muscle fibres are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast [goid 48743] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a pigment granule [goid 48753] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]; Any process that modulates the activity of an enzyme [goid 50790] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]; The process of apoptosis in neurons, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system [goid 51402] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses [goid 51412] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus [goid 51593] [evidence IEP]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IEA]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IEA]; Interacting selectively with any protease or peptidase [goid 2020] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with the BH3 domain of a protein of the Bcl-2 family. The BH3 domain is a potent death domain and has an important role in protein-protein interactions and in cell death [goid 51434] [evidence IEA]; Interacting selectively with the BH3 domain of a protein of the Bcl-2 family. The BH3 domain is a potent death domain and has an important role in protein-protein interactions and in cell death [goid 51434] [evidence ISS]	Bcl-2	Bcl-2
Rattus norvegicus	RefSeq	GI_62718083	ILMN_285788	LOC690081	XM_001073178.1	XM_001073178.1		690081	109513459	XM_001073178.1	LOC690081	XP_001073178.1	ILMN_1650599	0002640086	S	477	GCCTGTAGCTCTGGGTCCATGTCTTCTGTTGTTTGAATATCACTGTGCCG	Un|NW_047883.1	-	369507-369556		PREDICTED: Rattus norvegicus hypothetical protein LOC690081 (LOC690081), mRNA.					
Rattus norvegicus	RefSeq	GI_62078736-S	ILMN_274649	AMT	NM_001014004.1	NM_001014004.1		306586	62078736	NM_001014004.1	Amt	NP_001014026.1	ILMN_1359302	0003830601	S	1912	CATGGGACTCACCCTTCCACATTCCCAAGTCAACCCAGCCTACTGTGCAG					Rattus norvegicus aminomethyltransferase (glycine cleavage system protein T) (Amt), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid [goid 6546] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein [goid 4047] [evidence IEA]; Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid [goid 8483] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_32189351-A	ILMN_275240	TRPC4	NM_053434.1	NM_053434.1		84494	17865332	NM_053434.1	Trpc4	NP_445886.1	ILMN_1376416	0002690541	A	2933	AGCCCCACGGACACAGTTGCCCATGAAGATTATGTGACCACGAGATTGTG	2	+	143485477-143485526	2q26	Rattus norvegicus transient receptor potential cation channel, subfamily C, member 4 (Trpc4), transcript variant 1, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Trrp4; Trp4	Trrp4; Trp4
Rattus norvegicus	RefSeq	GI_17865332-I	ILMN_275240	TRPC4	NM_053434.1	NM_053434.1		84494	17865332	NM_053434.1	Trpc4	NP_445886.1	ILMN_1375991	0004200348	I	3206	CTGTTGAATAAACGCACCTTCTACCCTTGTACTGTTACAATAACCCACAG	2	+	143485750-143485799	2q26	Rattus norvegicus transient receptor potential cation channel, subfamily C, member 4 (Trpc4), transcript variant 1, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IDA]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IMP]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IDA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Trrp4; Trp4	Trrp4; Trp4
Rattus norvegicus	RefSeq	Rn.43952	ILMN_66019	SLC39A1_PREDICTED	XM_342286.3	XM_342286.3		361986	109465101	XM_342286.3	Slc39a1_predicted	XP_342287.2	ILMN_1530428	0006400348	S	1145	AATTTGTGGGAAATTGAAAGGAATGGAGAAAGGAAGTAGTGAGGACCAAA	2	+	182494774-182494823	2q34	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 1 (predicted) (Slc39a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643809-S	ILMN_66019	SLC39A1_PREDICTED	XM_342286.3	XM_342286.3		361986	109465101	XM_342286.3	Slc39a1_predicted	XP_342287.2	ILMN_1356714	0003190170	S	1336	GGCAGACCGCTACAATCAGAGGTCAGGCTCTACATCTAAGAGACAAGCTG	2	+	182494965-182495014	2q34	PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 1 (predicted) (Slc39a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651037-S	ILMN_67067	RBM25_PREDICTED	XM_345703.2	XM_345703.2		366693	62651037	XM_345703.2	Rbm25_predicted	XP_345704.2	ILMN_1349231	0006760148	S	3455	GCAGGATGGCCTGGAACTTATAAAGAGCCATTTACCTCTGGTCCCAAGAG				6q24-q31	PREDICTED: Rattus norvegicus RNA binding motif protein 25 (predicted) (Rbm25_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40018543-S	ILMN_294582	SLC35B1	NM_199081.1	NM_199081.1		287642	40018543	NM_199081.1	Slc35b1	NP_954512.1	ILMN_1359413	0002640601	S	980	CACCGTGCTGGTTTTCCTGGGTCTGGGTCTTGATGCCAAGTTTGGGAAAG	10	+	84075786-84075805:84076689-84076718	10q31	Rattus norvegicus solute carrier family 35, member B1 (Slc35b1), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y [goid 8643] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]	UGTrel1; MGC105266	UGTrel1; MGC105266
Rattus norvegicus	RefSeq	GI_61556759-S	ILMN_282966	ALLC	NM_001013037.1	NM_001013037.1		246758	61556759	NM_001013037.1	Allc	NP_001013055.1	ILMN_1356426	0001190128	S	1240	GTCATCACTCATGCCAGGATTACCATTGCCCCTGATGGCGGTGTGAGCCG				6q16	Rattus norvegicus allantoicase (Allc), mRNA.			Catalysis of the reaction: allantoate + H2O = (-)-ureidoglycolate + urea [goid 4037] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576926-S	ILMN_267841	OLR242	NM_001000213.1	NM_001000213.1		293387	47576926	NM_001000213.1	Olr242	NP_001000213.1	ILMN_1349549	0000110368	S	595	CCTTCTATCTCTGCTGGAACCATCATTGTGGTCACAGTGTTTGTCATAGC	1	+	165350355-165350404	1q33	Rattus norvegicus olfactory receptor 242 (Olr242), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr242; ratchr1-165460424-165461356_ORF	Olr242; ratchr1-165460424-165461356_ORF
Rattus norvegicus	RefSeq	GI_62660051-S	ILMN_66897	LOC498318	XM_579814.1	XM_579814.1		498318	62660051	XM_579814.1	LOC498318	XP_579814.1	ILMN_1350635	0006940593	S	679	GTGAGCTGTGATATGGGCAGAGAAAGGCCAGGACACAGTGGTGATTTCCC					PREDICTED: Rattus norvegicus LOC498318 (LOC498318), mRNA.					
Rattus norvegicus	RefSeq	GI_56606077-S	ILMN_280377	CCL21B	NM_001008513.1	NM_001008513.1		298006	56606077	NM_001008513.1	Ccl21b	NP_001008513.1	ILMN_1357180	0003870735	S	504	TCCAACTCACAGGCAAAGAGGGAGCTAGAGAGCAGAAAGACTCAGGGGCC	5	-	59239181-59239230	5q22	Rattus norvegicus chemokine (C-C motif) ligand 21b (serine) (Ccl21b), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	MGC105669	MGC105669
Rattus norvegicus	RefSeq	GI_12621113-S	ILMN_287797	VEGP1	NM_022945.1	NM_022945.1		65039	12621113	NM_022945.1	Vegp1	NP_075234.1	ILMN_2039570	0002490398	S	611	GCCTGCCTCACAGCATTGCTCTACTCTGCACAGATCCACTGAGCTTGGGA	3	+	4883380-4883429	3p13	Rattus norvegicus von Ebners gland protein 1 (Vegp1), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62662440-S	ILMN_52050	DDX49_PREDICTED	XM_214290.3	XM_214290.3		290660	62662440	XM_214290.3	Ddx49_predicted	XP_214290.2	ILMN_1366841	0000380300	S	1231	GGAGATCAACAAGCGGAAACAGATGATCCTGGAGGGGAAGGACCCGGACC					PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 (predicted) (Ddx49_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667353-S	ILMN_57888	OCRL_MAPPED	XM_229106.4	XM_229106.4		317576	109511191	XM_229106.4	Ocrl_mapped	XP_229106.4	ILMN_1350254	0000780736	S	4928	GCACCAAGTTGCTTCACTGCCTCAGCCTTTTGTCCAGCTTGGCCTGGGAT	X	+	134322302-134322351	Xq35	PREDICTED: Rattus norvegicus oculocerebrorenal syndrome of Lowe (mapped) (Ocrl_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62638562-S	ILMN_55822	LOC361482	XM_341759.2	XM_341759.2		361482	62638562	XM_341759.2	LOC361482	XP_341760.2	ILMN_1355186	0006290541	S	285	GTGGGAGCTGTTGCCTTTCAGAGGGCTGCTGGCCAGTATAAACTGGAAAT					PREDICTED: Rattus norvegicus similar to Afadin (AF-6 protein) (LOC361482), mRNA.					
Rattus norvegicus	RefSeq	GI_62078886-S	ILMN_298806	CLEC14A	NM_001014077.1	NM_001014077.1		314148	62078886	NM_001014077.1	Clec14a	NP_001014099.1	ILMN_1374024	0006200014	S	2463	GCCCTATTTAATCCATGAGGGTGGGGGTGGGGACACTTGAATGTCAACCC	6	-	78852266-78852315	6q23	Rattus norvegicus C-type lectin domain family 14, member a (Clec14a), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]	RGD1306232	RGD1306232
Rattus norvegicus	RefSeq	GI_62649945-S	ILMN_55457	FBXO42_PREDICTED	XM_342963.3	XM_342963.3		362646	109475704	XM_342963.3	Fbxo42_predicted	XP_342964.2	ILMN_1363408	0000110537	S	2989	ACGTGCTGGAGTCGTGCTGAAACAATGTGCATAGAGCCGCCATCCCTCCG	5	+	160061973-160062022	5q36	PREDICTED: Rattus norvegicus F-box protein 42 (predicted) (Fbxo42_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644290-S	ILMN_68524	NDST3_PREDICTED	XM_227665.3	XM_227665.3		295430	62644290	XM_227665.3	Ndst3_predicted	XP_227665.3	ILMN_1369040	0004120377	S	2569	AGCTCTCAGACACATACCTCTGCACCACGGAAAACAAGCAAGGCTCTCCC				2q42	PREDICTED: Rattus norvegicus N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 (predicted) (Ndst3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638714-S	ILMN_63102	RGD1565390_PREDICTED	XM_344843.3	XM_344843.3		365149	109457855	XM_344843.3	RGD1565390_predicted	XP_344844.2	ILMN_1366248	0005340048	S	1157	GCACAGCAAGTGCCTCCCGTTACAGTCCCATTCCCTAGCCTTGATACTGC	1	+	51379335-51379384	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1565390_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34864940-S	ILMN_63102	RGD1565390_PREDICTED	XM_344843.3	XM_344843.3		365149	109457855	XM_344843.3	RGD1565390_predicted	XP_344844.2	ILMN_1361452	0002510484	S	833	GTGTATCCTACCCCCTGTGGGGTTTCAGAAGAACTGGAGAACCTCCTTAG	1	+	51379011-51379060	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1565390_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_12018295-S	ILMN_277931	SEPT7	NM_022616.1	NM_022616.1		64551	12018295	NM_022616.1	Sept7	NP_072138.1	ILMN_1370494	0003190735	S	1187	GGAAAAAGTTCAAAAGCTGAAGGACTCTGAAGCCGAGCTCCAGCGGCGCC	8	+	24983982-24984016:24985793-24985807	8q13	Rattus norvegicus septin 7 (Sept7), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Any of several heterooligomeric complexes containing multiple septins [goid 31105] [evidence IEA]; Any of several heterooligomeric complexes containing multiple septins [goid 31105] [evidence IEA]	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cdc10	Cdc10
Rattus norvegicus	RefSeq	GI_47576860-S	ILMN_286517	OLR213	NM_001000735.1	NM_001000735.1		404994	47576860	NM_001000735.1	Olr213	NP_001000735.1	ILMN_1350188	0006620091	S	536	GTGAACCACCTGCCCTCCTAAAGCTGGCTTCAGCTGACACCCACAATGTG	1	-	164027175-164027224	1q33	Rattus norvegicus olfactory receptor 213 (Olr213), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr213	Olr213
Rattus norvegicus	RefSeq	GI_58865645-A	ILMN_283258	CDKL2	NM_001012035.1	NM_001012035.1		305242	58865645	NM_001012035.1	Cdkl2	NP_001012035.1	ILMN_1376710	0002630114	S	1611	GAGCTTCAAATGGCAGCTGTCTCCATGACAACGGGACAAGCCACAAAGGC	14	+	17620556-17620605	14p22	Rattus norvegicus cyclin-dependent kinase-like 2 (CDC2-related kinase) (Cdkl2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK) [goid 4693] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641813-S	ILMN_59871	RGD1310168_PREDICTED	XM_219540.4	XM_219540.4		309186	109459792	XM_219540.4	RGD1310168_predicted	XP_219540.4	ILMN_1351911	0005220292	S	2014	CCTGGCGCTTCAGCAACATGCGGCAATGGAACGTCAACTGGGACATACGG	1	-	209673450-209673499	1q43	PREDICTED: Rattus norvegicus similar to cDNA sequence BC032204 (predicted) (RGD1310168_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662200-S	ILMN_289965	RGD1559931_PREDICTED	XM_001057751.1	XM_001057751.1		306264	109503735	XM_001057751.1	RGD1559931_predicted	XP_001057751.1	ILMN_1359080	0003850333	S	4863	CCCAGGAACAATGACTTCACACTGGGGGAGGGGTCTTGATAGAGCTGGTG				16p16	PREDICTED: Rattus norvegicus similar to Ankyrin repeat domain protein 28 (predicted), transcript variant 3 (RGD1559931_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659760-S	ILMN_286715	RGD1562464_PREDICTED	XM_001055980.1	XM_001055980.1		289236	109499079	XM_001055980.1	RGD1562464_predicted	XP_001055980.1	ILMN_1349044	0004670025	S	1641	CGCTGTCTGTATCCCAGAAACGCAGAGGTAGGAGCCAGATGTTCCCAGCC				13q24	PREDICTED: Rattus norvegicus similar to hypothetical protein A030011M19 (predicted) (RGD1562464_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639849-S	ILMN_67386	LOC499164	XM_574461.1	XM_574461.1		499164	62639849	XM_574461.1	LOC499164	XP_574461.1	ILMN_1360852	0003870022	S	209	GAACATCGGCACAGATGGACTTCAGCCAGATGGAGCTGTGGAGAAAGGCC				1q22	PREDICTED: Rattus norvegicus similar to airway trypsin-like 5 (LOC499164), mRNA.					
Rattus norvegicus	RefSeq	GI_13786131-S	ILMN_295348	ACOT1	NM_031315.1	NM_031315.1		50559	13786131	NM_031315.1	Acot1	NP_112605.1	ILMN_1353833	0004570131	S	1447	GACTCATGCAAGTTCCTGGGTTCAATCTCCGTGCTGTAAGGGAAAAGAGC	6	+	108049910-108049959	6q31	Rattus norvegicus acyl-CoA thioesterase 1 (Acot1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater [goid 38] [evidence ISS]; The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence ISS]; The chemical reactions and pathways involving long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 1676] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence TAS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence ISS]	Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate [goid 16290] [evidence IEA]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence IDA]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A [goid 16790] [evidence IEA]	Acot1	Acot1
Rattus norvegicus	RefSeq	GI_62654028-S	ILMN_59635	LOC367122	XM_576436.1	XM_576436.1		367122	62654028	XM_576436.1	LOC367122	XP_576436.1	ILMN_1350168	0000110471	S	81	CCGGGTATACGGTCCGGAACACAGCAGATCGCCAGATCAGACAACTATCT				8q31	PREDICTED: Rattus norvegicus similar to tumor protein, translationally-controlled 1 (LOC367122), mRNA.					
Rattus norvegicus	RefSeq	GI_62644750-S	ILMN_274080	RGD1561492_PREDICTED	XM_001074131.1	XM_001074131.1		499755	109469440	XM_001074131.1	RGD1561492_predicted	XP_001074131.1	ILMN_1349831	0003520541	S	187	CCATACCCTGTGCAGTGGGGCTTCCTGGTGTCTGCCGTTGTAGGATCTGT				3p13	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC14141 (predicted) (RGD1561492_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47834334	ILMN_292975	OLR1744	NM_001001426.1	NM_001001426.1		294198	47834334	NM_001001426.1	Olr1744	NP_001001426.1	ILMN_1650255	0002450619	S	523	CACTTCTTCTGTGAGATCCAGCCGGTGCTGCAGTTGGTGTGTGGAGACAC	20	+	1461579-1461628	20p12	Rattus norvegicus olfactory receptor 1744 (Olr1744), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	MOR263-3; Or7; Olr1744	MOR263-3; Or7; Olr1744
Rattus norvegicus	RefSeq	GI_62656569-I	ILMN_56505	PIPOX_PREDICTED	XM_573147.1	XM_573147.1		303272	62656569	XM_573147.1	Pipox_predicted	XP_573147.1	ILMN_1375302	0000940670	S	381	AGCAGCAAGCCTGGAGGTGCCTTTGTTTGCCTTCTCCTTCGTGGGTTTTG				10q25	PREDICTED: Rattus norvegicus pipecolic acid oxidase (predicted) (Pipox_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641040-S	ILMN_66755	NUMA1	XM_218972.4	XM_218972.4		308870	109459148	XM_218972.4	Numa1	XP_218972.4	ILMN_1363320	0002450632	S	6964	GACTTGCACTGGGGGGATATGGAACGATGGGAAGGTTTTTAAGGGCCGGG	1	+	159470855-159470904	1q32	PREDICTED: Rattus norvegicus nuclear mitotic apparatus protein 1 (Numa1), mRNA.	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell [goid 51321] [evidence IEP]	Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62653452-S	ILMN_279790	RGD1560384_PREDICTED	XM_001056255.1	XM_001056255.1		500964	109484458	XM_001056255.1	RGD1560384_predicted	XP_001056255.1	ILMN_1356621	0002320280	S	3408	GGACTCCACAAGCCCCAGCCAACAGCAGACCACCCAGTACATCATCACAA				8q13	PREDICTED: Rattus norvegicus similar to PR domain containing 10 isoform 2 (predicted) (RGD1560384_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576046-S	ILMN_291365	OLR962	NM_001000487.1	NM_001000487.1		302045	47576046	NM_001000487.1	Olr962	NP_001000487.1	ILMN_1369700	0003840215	S	875	ACCGGCAGGTGAAAGAATTCTTCTGGGATGTATTGCGAAAGACTATGGGC	7	-	5158623-5158672	7q11	Rattus norvegicus olfactory receptor 962 (Olr962), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr962; ratchr7-5159547-5158603_ORF	Olr962; ratchr7-5159547-5158603_ORF
Rattus norvegicus	RefSeq	GI_62641099-S	ILMN_69485	LOC308919	XM_219202.3	XM_219202.3		308919	62641099	XM_219202.3	LOC308919	XP_219202.3	ILMN_1372390	0006370008	S	1840	CCCTCGGAAAGAATCAACCTGCTGACACACTGACCTTGGACTCTGTCCTC				1q33	PREDICTED: Rattus norvegicus similar to oviductin precursor (LOC308919), mRNA.					
Rattus norvegicus	RefSeq	GI_62649411-S	ILMN_290694	LOC689577	XM_001071243.1	XM_001071243.1		689577	109475301	XM_001071243.1	LOC689577	XP_001071243.1	ILMN_1371567	0002360167	S	69	CAGCGTCATCCTCATCCACACCCAGGTGAAACTGTTGGCCTCACCAGCAC	5	-	130840671-130840720	5q35	PREDICTED: Rattus norvegicus similar to RING finger protein 11 (NEDD4 WW domain-binding protein 2) (Sid 1669) (LOC689577), mRNA.					
Rattus norvegicus	RefSeq	GI_62638823-S	ILMN_68514	PRPF31_PREDICTED	XM_218173.4	XM_218173.4		292536	109457918	XM_218173.4	Prpf31_predicted	XP_218173.3	ILMN_1350059	0003060600	S	1437	TGTGAACCCACAAGCAGCCGAGAAGAAGGTGGCAGAGGCCAATCAGAAGT	1	-	63889700-63889749	1q12	PREDICTED: Rattus norvegicus PRP31 pre-mRNA processing factor 31 homolog (yeast) (predicted) (Prpf31_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758463-S	ILMN_276224	KREMEN1	NM_053649.1	NM_053649.1		114107	16758463	NM_053649.1	Kremen1	NP_446101.1	ILMN_1359134	0002100195	S	1679	CCTGGTTCTCGAAGACTCCTGGGTGGCGGGTAGGCATAGTGTATGATGAG	14	-	85845685-85845734	14q21	Rattus norvegicus kringle containing transmembrane protein 1 (Kremen1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work [goid 7517] [evidence NAS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]	Kremen	Kremen
Rattus norvegicus	RefSeq	GI_62658368-S	ILMN_68738	LOC296529	XM_238309.3	XM_238309.3		296529	62658368	XM_238309.3	LOC296529	XP_238309.2	ILMN_1366235	0006450112	S	173	TGCATTCCTGTCTGTGGCAACTGTTATTTTCCTCATAGTTTTGGGTTTCA					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC296529), mRNA.					
Rattus norvegicus	RefSeq	GI_62650950-S	ILMN_62589	LOC500685	XM_576067.1	XM_576067.1		500685	62650950	XM_576067.1	LOC500685	XP_576067.1	ILMN_1349357	0006900280	S	2203	AGGGGCTGCGATCCCACCTGCCCTCGCTTCAAGAACACAGTAGGGACTTA				6q24	PREDICTED: Rattus norvegicus similar to pleckstrin homology domain protein (5V327) (LOC500685), mRNA.					
Rattus norvegicus	RefSeq	GI_62653773-S	ILMN_267101	RGD1310937_PREDICTED	XM_001073042.1	XM_001073042.1		300759	109484788	XM_001073042.1	RGD1310937_predicted	XP_001073042.1	ILMN_1355722	0004010022	S	2173	CTAAGGACCTCCAGAAGCATGGAAACATTTGGGTGTGCCCTGTGTCTGAC				8q24	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1310937_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643082-S	ILMN_53196	LOC365704	XM_345171.2	XM_345171.2		365704	62643082	XM_345171.2	LOC365704	XP_345172.2	ILMN_1371843	0006420195	S	929	AGGAGAACAGCAAGGGCTGTACACAGTCAAGCAACTGGGAGGGCATGGGC					PREDICTED: Rattus norvegicus similar to putative protein (80.3 kD) (5T676) (LOC365704), mRNA.					
Rattus norvegicus	RefSeq	GI_62078540-S	ILMN_271373	RGD1307648	NM_001013905.1	NM_001013905.1		294004	62078540	NM_001013905.1	RGD1307648	NP_001013927.1	ILMN_1373961	0000540139	S	1111	TGTATGGTGGGACAGAGCGAAAGGTCACCCAGCTCAGCACCTAGAGCCCT	1	+	250746487-250746536	1q54	Rattus norvegicus similar to CG13901-PA (RGD1307648), mRNA.					
Rattus norvegicus	RefSeq	GI_61556992-S	ILMN_283115	HIBCH	NM_001013112.1	NM_001013112.1		301384	61556992	NM_001013112.1	Hibch	NP_001013130.1	ILMN_1374866	0003390451	S	1375	GGCTTGGAGTGGCCATGGCACAGACTTCATGACCCACAGCACCTCAAGTA	9	-	45564992-45565041	9q22	Rattus norvegicus 3-hydroxyisobutyryl-Coenzyme A hydrolase (Hibch), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence IEA]	Catalysis of the reaction: 3-hydroxy-2-methylpropanoyl-CoA + H2O = CoA + 3-hydroxy-2-methylpropanoate [goid 3860] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_40254726-S	ILMN_267517	POMC	NM_139326.2	NM_139326.2		24664	40254726	NM_139326.2	Pomc	NP_647542.1	ILMN_1371606	0006760372	S	789	AGAACGCCATCATCAAGAACGCGCACAAGAAGGGCCAGTGAGGGTGCAGG	6	+	26937646-26937680:26937681-26937695	6q14	Rattus norvegicus proopiomelanocortin (Pomc), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]	The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence NAS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]	Pomc2; Pomc1	Pomc2; Pomc1
Rattus norvegicus	RefSeq	GI_22129748-S	ILMN_262542	CASC3	NM_147144.1	NM_147144.1		259170	22129748	NM_147144.1	Casc3	NP_671485.1	ILMN_1352423	0000630364	S	2042	CCCAGCCAGTCTCCATCAAGCCCCCTCCATCTGAGGTTGTAAGCAGAGGT	10	+	87601350-87601384:87601538-87601552	10q31	Rattus norvegicus cancer susceptibility candidate 3 (Casc3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence ISS]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; Any process by which mRNA is transported to, or maintained in, a specific location within the cell [goid 8298] [evidence ISS]; Any process by which mRNA is transported to, or maintained in, a specific location within the cell [goid 8298] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	Mln51; Btz	Mln51; Btz
Rattus norvegicus	RefSeq	GI_62646128-S	ILMN_69583	TRPC4AP	XM_342553.3	XM_342553.3		362247	109469048	XM_342553.3	Trpc4ap	XP_342554.2	ILMN_1350242	0000360025	S	2957	ATTGGCCACTGTGTTCATCCTGGAGGTTCCCCGGAAGTGGGGGGCCTTTT	3	-	146139644-146139693	3q42	PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily C, member 4 associated protein, transcript variant 2 (Trpc4ap), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13592100-S	ILMN_302017	STXBP2	NM_031126.1	NM_031126.1		81804	13592100	NM_031126.1	Stxbp2	NP_112388.1	ILMN_1364905	0000510088	S	1867	CCTCACTTTCTTCCCAGAGAGAGCTGTATAAACCAGACCCATGCTGCCGG	12	-	2511994-2512043	12p12	Rattus norvegicus syntaxin binding protein 2 (Stxbp2), mRNA.		The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft [goid 16079] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62653052-S	ILMN_54635	RGD1565411_PREDICTED	XM_343330.3	XM_343330.3		363000	109481297	XM_343330.3	RGD1565411_predicted	XP_343331.3	ILMN_1354887	0002100279	S	575	CACATGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCCAGG	7	+	138064150-138064199	7q36	PREDICTED: Rattus norvegicus similar to 2610317D23Rik protein (predicted) (RGD1565411_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718674-S	ILMN_52875	LOC503389	XM_578927.1	XM_578927.1		503389	62718674	XM_578927.1	LOC503389	XP_578927.1	ILMN_1364859	0003060538	S	107	TGTGCAAATTCTTCCTGACCAGCTGGCAGATGGTGGAGCGATATGTCTGG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503389), mRNA.					
Rattus norvegicus	RefSeq	GI_62659652-S	ILMN_61277	LOC498268	XM_579805.1	XM_579805.1		498268	62659652	XM_579805.1	LOC498268	XP_579805.1	ILMN_1366712	0002760494	S	450	TGTGACAGGATCACCTTAAACTCTGCCTCCTGCAAGGACGAGATGGAGGG					PREDICTED: Rattus norvegicus LOC498268 (LOC498268), mRNA.					
Rattus norvegicus	RefSeq	GI_62645240-S	ILMN_289058	RGD1562409_PREDICTED	XM_001061180.1	XM_001061180.1		499809	109470082	XM_001061180.1	RGD1562409_predicted	XP_001061180.1	ILMN_1363362	0000770746	S	292	GGCAAACAGTGACTCAGCCGCTTAAGCTCGCCCACAAGTACAGGTCAGAG				3q22	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1562409_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639873-S	ILMN_68101	LOC308551	XM_218549.3	XM_218549.3		308551	62639873	XM_218549.3	LOC308551	XP_218549.3	ILMN_1348833	0000540368	S	4228	TCCAGAAAAGCCATGTAGGAGTCCACCCACCAGTGAAGGTGAGCGGCTAC				1q22	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (LOC308551), mRNA.					
Rattus norvegicus	RefSeq	GI_41386750-S	ILMN_295079	CLCA4	NM_201419.1	NM_201419.1		362053	41386750	NM_201419.1	Clca4	NP_958822.1	ILMN_1370080	0004810180	S	2583	GGCCACACTTGATGGGGAAAAGATCAGTCTAACATGGACGGCACCAGGAG	2	-	243003084-243003133	2q44	Rattus norvegicus chloride channel, calcium activated, family member 4 (Clca4), mRNA.				Prp3	Prp3
Rattus norvegicus	RefSeq	GI_62661008-S	ILMN_266830	RGD1566399_PREDICTED	XR_008228.1	XR_008228.1		305681	109502137	XR_008228.1	RGD1566399_predicted		ILMN_1374829	0001240500	S	1162	CTGTGACCCACCACTTTCCAGAATGCCAAAAGGGATGTGGATTTGCCAAG					PREDICTED: Rattus norvegicus similar to MYST histone acetyltransferase monocytic leukemia 4 (predicted) (RGD1566399_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27465582-S	ILMN_271433	LOC286911	NM_173127.1	NM_173127.1		286911	27465582	NM_173127.1	LOC286911	NP_775150.1	ILMN_1349960	0004540279	S	626	GCCAGCTCCAGGGTGTTGTTTCCTGGGGTTATGGCTGTGCTCAGAAAGGA	4	-	68672427-68672476	4q22	Rattus norvegicus cationic trypsinogen (LOC286911), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62657981-S	ILMN_277875	SNX4_PREDICTED	XM_001072295.1	XM_001072295.1		360725	109494496	XM_001072295.1	Snx4_predicted	XP_001072295.1	ILMN_1350437	0005340091	S	2254	GTTCAGAAACCAAGCCTTGCTCTGCTAGCTTCAGAATCCTAACTCTGCAC				11q22	PREDICTED: Rattus norvegicus sorting nexin 4 (predicted) (Snx4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47575856-S	ILMN_295502	RNASE4	NM_020082.2	NM_020082.2		56759	47575856	NM_020082.2	Rnase4	NP_064467.1	ILMN_1362410	0006860280	S	1101	AGGTGGTTTGACACCCCACACAGATAGACATGTCGGCAGAACACCAATGC	15	+	27090205-27090254	15p14	Rattus norvegicus ribonuclease, RNase A family 4 (Rnase4), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718235-S	ILMN_49510	LOC501333	XM_576744.1	XM_576744.1		501333	62718235	XM_576744.1	LOC501333	XP_576744.1	ILMN_1363132	0005130161	S	534	GGCCCTGCGCTGCAGTTGCAGTCAGAGGAAAAGCAGCTGTTCACTTGTGT					PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501333), mRNA.					
Rattus norvegicus	RefSeq	GI_62666694-S	ILMN_67367	RGD1566136_PREDICTED	XM_213106.4	XM_213106.4		300278	109510571	XM_213106.4	RGD1566136_predicted	XP_213106.1	ILMN_1353766	0006980152	S	458	CAGGGTCCGCAAGCAGGTGGTAAACATCCCATCTTTCATTGTTTGTCTGG	X	+	36637730-36637779	Xq14	PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S9 (predicted) (RGD1566136_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655441	ILMN_69791	LOC501192	XM_576620.1	XM_576620.1		501192	62655441	XM_576620.1	LOC501192	XP_576620.1	ILMN_1650528	0001990400	S	1408	TTTATGGGACTATGTGCTGAAGGCCTACTAACGGGCACCCTGGGCTACAC				9q36	PREDICTED: Rattus norvegicus similar to solute carrier organic anion transporter family, member 6c1 (LOC501192), mRNA.					
Rattus norvegicus	RefSeq	GI_62650228-S	ILMN_49353	LOC500603	XM_575976.1	XM_575976.1		500603	62650228	XM_575976.1	LOC500603	XP_575976.1	ILMN_1362418	0004070487	S	569	GCTCAGCCTTGTGCCACGGAGCAGTGATAGCATTTGAGCCTCCGAAGACA					PREDICTED: Rattus norvegicus similar to cysteine-rich repeat-containing protein CRIM1 (LOC500603), mRNA.					
Rattus norvegicus	RefSeq	GI_62663948-S	ILMN_279188	SPAG6_PREDICTED	XM_001073798.1	XM_001073798.1		291340	109506216	XM_001073798.1	Spag6_predicted	XP_001073798.1	ILMN_1366758	0006110647	S	1534	AAATGCACCTACCTCCCAGCTCTTGAGCCGTTTCTCTATGATGCGCCTCC				17q12.3	PREDICTED: Rattus norvegicus sperm associated antigen 6 (predicted) (Spag6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577242-S	ILMN_290549	OLR384	NM_001000263.1	NM_001000263.1		293817	47577242	NM_001000263.1	Olr384	NP_001000263.1	ILMN_1351028	0006180195	S	889	GTGAAATCTGCCTTCAAGAAGGTTATTGGTAAATGCCCGGTCTCCCACAG	1	+	217065228-217065277	1q43	Rattus norvegicus olfactory receptor 384 (Olr384), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr384	Olr384
Rattus norvegicus	RefSeq	GI_62643855-S	ILMN_264316	THEM4	NM_001025017.1	NM_001025017.1		361992	68163472	NM_001025017.1	Them4	NP_001020188.1	ILMN_1373031	0002900019	S	953	AGAAGTACTGCCCGGGGGCGTCTCAGCAGTAATCTGTATGTCCACGTGAC	2	+	189307556-189307605	2q34	Rattus norvegicus thioesterase superfamily member 4 (Them4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]			RGD1304723	RGD1304723
Rattus norvegicus	RefSeq	GI_16758163-S	ILMN_290363	SLC4A4	NM_053424.1	NM_053424.1		84484	16758163	NM_053424.1	Slc4a4	NP_445876.1	ILMN_1367577	0005900706	S	3135	GATAGCGACAACGACGATTCTGACTGCCCATACTCAGAAAAGGTCCCCAG	14	-	20384880-20384912:20389300-20389316	14p22	Rattus norvegicus solute carrier family 4 (anion exchanger), member 4 (Slc4a4), mRNA.	Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence TAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + HCO3-(out) = Na+(in) + HCO3-(in) [goid 8510] [evidence TAS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	KNBC; HNBC1; SLC4A5; PNBC; NBC2; Nbc1; HHNMC; Nbc4	KNBC; HNBC1; SLC4A5; PNBC; NBC2; Nbc1; HHNMC; Nbc4
Rattus norvegicus	RefSeq	GI_62645115-S	ILMN_274081	RGD1560248_PREDICTED	XM_001066238.1	XM_001066238.1		499797	109469917	XM_001066238.1	RGD1560248_predicted	XP_001066238.1	ILMN_1359357	0006110504	S	1389	TCAGAAGAAAGGGGACGGGGACATTGCCATACTGCCGGTTGTGGCCTCTG				3q12	PREDICTED: Rattus norvegicus similar to formin-like 2 isoform B (predicted) (RGD1560248_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645117-S	ILMN_274081	RGD1560248_PREDICTED	XM_001066238.1	XM_001066238.1		499797	109469917	XM_001066238.1	RGD1560248_predicted	XP_001066238.1	ILMN_1357105	0004560148	S	2876	GGCGACAAGTTAAAGATAACCGTCATGTGTACGAGGGAAAAGACGGCGCC				3q12	PREDICTED: Rattus norvegicus similar to formin-like 2 isoform B (predicted) (RGD1560248_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644229-S	ILMN_302275	DPH5	NM_001017449.1	NM_001017449.1		295394	62945253	NM_001017449.1	Dph5	NP_001017449.1	ILMN_1359096	0002120100	S	1334	GCCTCCCACCATGAGTTGTGGCGTCAGTTGGCTACTTGTGGGGGTTTACA	2	+	212066814-212066863	2q41	Rattus norvegicus DPH5 homolog (S. cerevisiae) (Dph5), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The posttranslational modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor eEF-2 [goid 17183] [evidence IEA]	Catalysis of the reaction: S-adenosyl-L-methionine + 2-(3-carboxy-3-aminopropyl)-L-histidine = S-adenosyl-L-homocysteine + 2-(3-carboxy-3-(methylammonio)propyl)-L-histidine [goid 4164] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109155; RGD1307867; CGI-30	MGC109155; RGD1307867; CGI-30
Rattus norvegicus	RefSeq	GI_62660421-S	ILMN_263355	RGD1310766_PREDICTED	XM_344236.2	XM_344236.2		364147	62660421	XM_344236.2	RGD1310766_predicted	XP_344237.1	ILMN_1349814	0000520064	S	855	CGCCGCTGAGAGACTATTCAGCAGAGAGAGGAGACAGCGCTCAATGATAG	14	+	41129126-41129175	14p11	PREDICTED: Rattus norvegicus similar to YIP1B (predicted) (RGD1310766_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650684-S	ILMN_262662	MGC112883	XM_001078955.1	XM_001078955.1		500651	109479386	XM_001078955.1	MGC112883	XP_001078955.1	ILMN_1354341	0000630039	S	1000	ATTCCTGTGAGGGCGGGTGACTGGTGGCCTTGTGCGATGCTGAGATGTAC				6q23	PREDICTED: Rattus norvegicus LOC500651 (MGC112883), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_54262170-S	ILMN_295624	TCEB1	NM_022593.2	NM_022593.2		64525	54262170	NM_022593.2	Tceb1	NP_072115.1	ILMN_1355516	0006900670	S	518	GTAGCATGTTGCCTGTATGAAGCTGAACTCTAAAGTGAATCGCTGAGCAG	5	-	1961002-1961051	5q11	Rattus norvegicus transcription elongation factor B (SIII), polypeptide 1 (Tceb1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1 [goid 30891] [evidence IDA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IDA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation [goid 3711] [evidence TAS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IC ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72822	MGC72822
Rattus norvegicus	RefSeq	GI_62644813-S	ILMN_271806	WDR5	NM_001039034.1	NM_001039034.1		362093	84781685	NM_001039034.1	Wdr5	NP_001034123.1	ILMN_1350585	0003290301	S	1486	GTCGGGCCAGGGGCGTGCATATATACCACCGAGTCTTGATAGCCACTGTG	3	+	6450302-6450351	3p12	Rattus norvegicus WD repeat domain 5 (Wdr5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC114572	MGC114572
Rattus norvegicus	RefSeq	GI_62644815-S	ILMN_271806	WDR5	NM_001039034.1	NM_001039034.1		362093	84781685	NM_001039034.1	Wdr5	NP_001034123.1	ILMN_1371519	0002480592	S	2525	GACCTCGCAAGCTGCCACAACCAGAGCAAACCCAGAATCTCCTTTCTGCC	3	+	6451341-6451390	3p12	Rattus norvegicus WD repeat domain 5 (Wdr5), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC114572	MGC114572
Rattus norvegicus	RefSeq	GI_56799394-S	ILMN_285554	GGH	NM_012960.2	NM_012960.2		25455	56799394	NM_012960.2	Ggh	NP_037092.1	ILMN_1356361	0000050064	S	1167	ACTGCTCAGGGCAGTGTGAGAAAGCCACACAGATGCCTTTGCTGTGTGCC	5	+	34693597-34693646	5q21	Rattus norvegicus gamma-glutamyl hydrolase (Ggh), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence TAS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6541] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]	Catalysis of the removal of terminal peptide residues that are substituted, cyclized or linked by isopeptide bonds (peptide linkages other than those of alpha-carboxyl to alpha-amino groups) [goid 8242] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC105496	MGC105496
Rattus norvegicus	RefSeq	GI_62653951-S	ILMN_294075	AMICA1_PREDICTED	XM_001067982.1	XM_001067982.1		315610	109484621	XM_001067982.1	Amica1_predicted	XP_001067982.1	ILMN_1360130	0005550154	S	1198	ACTACATGGGAGACGGCAGAGAGAGGACCAAGTGGAGAGTCAGAGGCCAC				8q22	PREDICTED: Rattus norvegicus adhesion molecule, interacts with CXADR antigen 1 (predicted) (Amica1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642496-A	ILMN_295929	VTI1A	NM_023101.1	NM_023101.1		65277	12831220	NM_023101.1	Vti1a	NP_075589.1	ILMN_1376721	0006040563	S	487	TCATGACAGAGAGAGGATACAGCGGGCACGTGAGCGACTCCGGGAAACAG				1q55	Rattus norvegicus vesicle transport through interaction with t-SNAREs homolog 1A (yeast) (Vti1a), mRNA.	Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IPI]; A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IPI]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The joining of two lipid bilayers to form a single membrane [goid 6944] [evidence IPI]; The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport [goid 42147] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion [goid 5484] [evidence ISS]	Vti1	Vti1
Rattus norvegicus	RefSeq	GI_62661884-S	ILMN_66256	LOC364337	XM_344361.2	XM_344361.2		364337	62661884	XM_344361.2	LOC364337	XP_344362.2	ILMN_1357779	0003120102	S	1795	AGAGCCAGTACCAAAACCTGCTCCTGGAGGCTTTGAGGAGGCACAGGTGA				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha-chain precursor (LOC364337), mRNA.					
Rattus norvegicus	RefSeq	GI_34874836-S	ILMN_66256	LOC364337	XM_344361.2	XM_344361.2		364337	62661884	XM_344361.2	LOC364337	XP_344362.2	ILMN_1354132	0003830373	S	433	GTGACTCTTCCTTCCACCTGCGGAAAGCCTCTGTGCACTGGAGTGACTCG				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha-chain precursor (LOC364337), mRNA.					
Rattus norvegicus	RefSeq	GI_62640934-S	ILMN_282112	RGD1561459_PREDICTED	XM_001064409.1	XM_001064409.1		361606	109462456	XM_001064409.1	RGD1561459_predicted	XP_001064409.1	ILMN_1364196	0004060037	S	158	GGCATTGATGTGCGAGTCCTCCAGACAGAGCAGGCAGTGAAGGAGTACAA				1q32	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810020D17 (predicted) (RGD1561459_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667501	ILMN_65898	LOC501656	XM_577051.1	XM_577051.1		501656	62667501	XM_577051.1	LOC501656	XP_577051.1	ILMN_1649939	0006770092	S	595	GCGGAAAAAGCTACTGGTCCAAACATACAGGAAATCCAGGACTCAGTGAG					PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501656), mRNA.					
Rattus norvegicus	RefSeq	GI_11560043-S	ILMN_56817	ARHGAP17	NM_022244.2	NM_022244.2		63994	78126173	NM_022244.2	Arhgap17	NP_071580.1	ILMN_1369298	0004670041	S	2836	TTGGTTCTCACATACCAGAGGGAGCTTCCGTTCCTTCAGACTTGCTGCAG	1	-	182145561-182145610	1q36	Rattus norvegicus Rho GTPase activating protein 17 (Arhgap17), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Rich1; MGC93451	Rich1; MGC93451
Rattus norvegicus	RefSeq	GI_57527280-S	ILMN_277092	TCEAL1	NM_001009675.1	NM_001009675.1		302593	57527280	NM_001009675.1	Tceal1	NP_001009675.1	ILMN_1363295	0005360132	S	586	GCATTGGAAGGCAAAACGGAGCCGTCCTTACCCTATTTAATGTGCCCCAC	X	+	124360092-124360131:124360132-124360141	Xq35	Rattus norvegicus transcription elongation factor A (SII)-like 1 (Tceal1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC105656	MGC105656
Rattus norvegicus	RefSeq	GI_62646112-S	ILMN_68882	E2F1	XM_230765.4	XM_230765.4		399489	109469083	XM_230765.4	E2f1	XP_230765.4	ILMN_1360877	0001050068	S	2239	TCTGAGATGGAGAGGGTGAGTGAGGGCCTTGGCTGATAGGGTGGGCAGGA	3	-	145032843-145032892	3q41	PREDICTED: Rattus norvegicus E2F transcription factor 1 (E2f1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Progression from G1 phase to S phase of the mitotic cell cycle [goid 82] [evidence TAS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]		
Rattus norvegicus	RefSeq	Rn.15416	ILMN_298113	PACSIN3	NM_001009966.2	NM_001009966.2		311187	71896551	NM_001009966.2	Pacsin3	NP_001009966.1	ILMN_1530518	0000730091	S	1692	ACCCTCTTTTGTGACTTCTTGTAGTGTGTATTAAATTTGATCAAGAATAA	3	+	75619546-75619595	3q24	Rattus norvegicus protein kinase C and casein kinase substrate in neurons 3 (Pacsin3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of endocytosis [goid 45806] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	SdpIII	SdpIII
Rattus norvegicus	RefSeq	GI_58000414-A	ILMN_298113	PACSIN3	NM_001009966.2	NM_001009966.2		311187	71896551	NM_001009966.2	Pacsin3	NP_001009966.1	ILMN_1376618	0002060129	S	1163	GTCCCCGGAAAGCTGGCACTGGGGTGAGGGTACGGGCACTTTATGACTAT	3	+	75618725-75618774	3q24	Rattus norvegicus protein kinase C and casein kinase substrate in neurons 3 (Pacsin3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination [goid 5802] [evidence ISS]	Any process that stops, prevents or reduces the frequency, rate or extent of endocytosis [goid 45806] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	SdpIII	SdpIII
Rattus norvegicus	RefSeq	GI_25282424-S	ILMN_277121	PPP1R14D	NM_172011.1	NM_172011.1		259226	25282424	NM_172011.1	Ppp1r14d	NP_742008.1	ILMN_1358046	0004610692	S	531	GGATTCTGGGCACCATCTACAGCCCTGACCTGGATACTGGCTGAAAGGCC	3	-	105731432-105731481	3q35	Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14D (Ppp1r14d), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein [goid 35304] [evidence IMP]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IMP]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Gbpi	Gbpi
Rattus norvegicus	RefSeq	GI_62660599-S	ILMN_273197	RGD1561694_PREDICTED	XM_001060826.1	XM_001060826.1		498388	109500753	XM_001060826.1	RGD1561694_predicted	XP_001060826.1	ILMN_1371503	0004920706	S	113	CAACAAGCCGCGGGGCAAGATGTCCTTGTACGCCTTCTTCGTGCAGACCT				14q21	PREDICTED: Rattus norvegicus similar to High mobility group protein 2 (HMG-2) (predicted) (RGD1561694_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643969-S	ILMN_51335	FLG	XM_238235.4	XM_238235.4		24641	109465156	XM_238235.4	Flg	XP_238235.4	ILMN_1360579	0002120438	S	936	CCAGCAGTCCCCCGACAGAGCCAGGCACATCGAATCCAGGAGGGGTAGAA	2	+	186308976-186309025	2q34	PREDICTED: Rattus norvegicus filaggrin (Flg), mRNA.	An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence TAS]; An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells [goid 1533] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence NAS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species [goid 8544] [evidence TAS]; The process whereby a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis [goid 9913] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis [goid 9913] [evidence NAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; The action of a molecule that contributes to the structural integrity of an epidermal cutaneous structure [goid 30280] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_16758971-A	ILMN_278478	NUDT4	NM_053598.1	NM_053598.1		94267	16758971	NM_053598.1	Nudt4	NP_446050.1	ILMN_1376752	0006370195	S	2583	CTGCAGCCTGCTGTGTGTGCTTATTTGTGCGCTGAATAAAATGGGGCAGC	7	-	32754021-32754070	7q13	Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 4 (Nudt4), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways involving phosphoinositides, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of inositol. They are important constituents of cell membranes [goid 30384] [evidence NAS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: diphospho-myo-inositol polyphosphate + H2O = myo-inositol polyphosphate + phosphate [goid 8486] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661066-S	ILMN_55789	LOC498444	XM_573699.2	XM_573699.2		498444	109501254	XM_573699.2	LOC498444	XP_573699.1	ILMN_1352575	0000450377	S	534	CATCCTGTGAGGAGGGAAAGAGGTTGTGTGAGGAGGCCAGCAAGACCATG	15	+	5752894-5752943	15p16	PREDICTED: Rattus norvegicus similar to Spetex-2E protein (LOC498444), mRNA.					
Rattus norvegicus	RefSeq	GI_62663241	ILMN_264509	LOC683156	XM_001064709.1	XM_001064709.1		683156	109505358	XM_001064709.1	LOC683156	XP_001064709.1	ILMN_1649937	0000360341	S	969	CCGGCCTTCTATTTACCCCAGCGTCTTCACCAGGGTCACCTACTTCACTG					PREDICTED: Rattus norvegicus similar to testicular serine protease 2 (predicted) (LOC683156), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758213-S	ILMN_278183	TMED10	NM_053467.1	NM_053467.1		84599	16758213	NM_053467.1	Tmed10	NP_445919.1	ILMN_1352091	0000940315	S	942	CCAAAGCCAGCATTCGTCCTGGGTCGCCTCACAGGATCGGTTTGAGCTGT	6	-	109396507-109396556	6q31	Rattus norvegicus transmembrane emp24-like trafficking protein 10 (yeast) (Tmed10), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence IDA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence IDA]; The lipid bilayer surrounding a zymogen granule [goid 42589] [evidence ISS]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence NAS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence TAS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence NAS]; The process by which vesicles are directed to specific destination membranes, mediated by microtubules that grow between molecules at the vesicle membrane and target membrane surfaces [goid 6903] [evidence NAS]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence IEP]; A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand [goid 45055] [evidence ISS]; The process by which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation [goid 48199] [evidence IEP]; The process by which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation [goid 48199] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Tmp21	Tmp21
Rattus norvegicus	RefSeq	GI_62666540-S	ILMN_58711	LOC317344	XM_228714.3	XM_228714.3		317344	62666540	XM_228714.3	LOC317344	XP_228714.3	ILMN_1358294	0000360164	S	925	TCAAAGGATGCAGGGAGTCAGACACCTGAAAGGAAGACTTGAGGTTGTCC				Xq13	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810030O07 (LOC317344), mRNA.					
Rattus norvegicus	RefSeq	GI_60223062-S	ILMN_262637	IL21R	NM_001012469.1	NM_001012469.1		308977	60223062	NM_001012469.1	Il21r	NP_001012487.1	ILMN_1358643	0006290619	S	1987	CTGATGAAGGACCCCCTCGAAGCTATCTCCGCCAGTGGGTGGTCAGGACT	1	+	184693167-184693216	1q36	Rattus norvegicus interleukin 21 receptor (Il21r), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence ISS]	MGC108921	MGC108921
Rattus norvegicus	RefSeq	GI_62648738-S	ILMN_262653	RGD1304693_PREDICTED	XR_007844.1	XR_007844.1		313108	109476236	XR_007844.1	RGD1304693_predicted		ILMN_1350397	0002260286	S	3512	GGCACTGAGAAGCCCTGCCTCTGTTCCGTGGATGATGCCTTTAAGAAAGC				5q21	PREDICTED: Rattus norvegicus similar to CG14803-PA (predicted) (RGD1304693_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13487926-S	ILMN_296957	CYP11B2	NM_012538.1	NM_012538.1		24294	13487926	NM_012538.1	Cyp11b2	NP_036670.1	ILMN_1369127	0000060273	S	2581	GTCAGACTTCTGTAGCCGAGGAAAGCAGTTGGAACTCCTGTAGTCTTGGC	7	-	113043423-113043472	7q34	Rattus norvegicus cytochrome P450, subfamily 11B, polypeptide 2 (Cyp11b2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence ISS]; The process by which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen [goid 1991] [evidence IEA]; The process by which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume [goid 2017] [evidence ISS]; The process by which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume [goid 2017] [evidence IEA]; The process by which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume [goid 2017] [evidence ISS]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol [goid 6704] [evidence ISS]; The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance [goid 32342] [evidence ISS]; The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance [goid 32342] [evidence IEA]; The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance [goid 32342] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of ions within an organism or cell [goid 50801] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of ions within an organism or cell [goid 50801] [evidence IEA]; The regulation of the levels, transport, and metabolism of potassium ions [goid 55075] [evidence ISS]; The regulation of the levels, transport, and metabolism of sodium ions [goid 55078] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IDA]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence ISS]; Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O [goid 4507] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O [goid 47783] [evidence IDA]; Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O [goid 47783] [evidence IEA]; Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O [goid 47783] [evidence IDA]	RNCP45AS; Cp45as	RNCP45AS; Cp45as
Rattus norvegicus	RefSeq	GI_62651559-S	ILMN_69945	LOC503100	XM_578620.1	XM_578620.1		503100	62651559	XM_578620.1	LOC503100	XP_578620.1	ILMN_1352596	0004590500	S	25	TGCTCGGAGAGCACACTGACACAGCCTCAGTTTTCAGCTGTACAGTCCAG				6q33	PREDICTED: Rattus norvegicus similar to anti-pigeon cytochrome c immunoglobulin heavy chain (LOC503100), mRNA.					
Rattus norvegicus	RefSeq	GI_62659412-S	ILMN_67173	LOC498238	XM_579801.1	XM_579801.1		498238	62659412	XM_579801.1	LOC498238	XP_579801.1	ILMN_1371929	0006900390	S	453	AGCGGGCAGGGCCACGCACACATGATAGGCACTCTCCACAACAGGAATTA				13q13	PREDICTED: Rattus norvegicus LOC498238 (LOC498238), mRNA.					
Rattus norvegicus	RefSeq	GI_62647428-S	ILMN_66409	LOC500182	XM_575534.1	XM_575534.1		500182	62647428	XM_575534.1	LOC500182	XP_575534.1	ILMN_1351908	0001990403	S	314	GCTATTACTGTCAAAATGGTTTAAGTGCCCCTCGCACGGTGATTCATGCC				4q31	PREDICTED: Rattus norvegicus similar to NGF-binding Ig light chain (LOC500182), mRNA.					
Rattus norvegicus	RefSeq	GI_62648077-S	ILMN_51064	RASGEF1A_PREDICTED	XM_232315.4	XM_232315.4		312664	109472541	XM_232315.4	Rasgef1a_predicted	XP_232315.4	ILMN_1365048	0000510576	S	2077	CTCGGACGCCTCTCCAGCCAGTGTCTCTGATGTTGGGGTTAGTGCCTTAG	4	+	154388891-154388940	4q42	PREDICTED: Rattus norvegicus RasGEF domain family, member 1A (predicted) (Rasgef1a_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577742-S	ILMN_301137	OLR1257	NM_001000596.1	NM_001000596.1		367061	47577742	NM_001000596.1	Olr1257	NP_001000596.1	ILMN_1350147	0005550300	S	1	ATGGCAGATAGCAATCGCTCCACAGTGACTGAGTTCATCCTCGCTGGCTT	8	-	40837820-40837869	8q22	Rattus norvegicus olfactory receptor 1257 (Olr1257), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1257; ratchr8-40846636-40845701_ORF	Olr1257; ratchr8-40846636-40845701_ORF
Rattus norvegicus	RefSeq	GI_47576394-S	ILMN_281065	OLR1563	NM_001000046.1	NM_001000046.1		288184	47576394	NM_001000046.1	Olr1563	NP_001000046.1	ILMN_1363556	0003610181	S	126	TCTTGGACTGGTGGCCTTGATCTACATGGAACCTCGTCTCCACACACCCA	11	+	42535718-42535767	11q12	Rattus norvegicus olfactory receptor 1563 (Olr1563), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1563	Olr1563
Rattus norvegicus	RefSeq	GI_62078808-S	ILMN_297367	TNFAIP8L2	NM_001014039.1	NM_001014039.1		310663	62078808	NM_001014039.1	Tnfaip8l2	NP_001014061.1	ILMN_1357580	0002060332	S	1207	CTCCACAAACCCAAGGAAGGGGACACTAAAGGCCAGACCAGGAAGGTGGC	2	-	190044776-190044825	2q34	Rattus norvegicus tumor necrosis factor, alpha-induced protein 8-like 2 (Tnfaip8l2), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1310519	RGD1310519
Rattus norvegicus	RefSeq	GI_58865647-A	ILMN_280870	SAMD8	NM_001012040.1	NM_001012040.1		305684	58865647	NM_001012040.1	Samd8	NP_001012040.1	ILMN_1376783	0000110154	S	1328	GGCTAATACCAGAGCGTATCACCAGAGCAGGAGAGCGAGAATTTGGTTCC	15	-	2569684-2569733	15p16	Rattus norvegicus sterile alpha motif domain containing 8 (Samd8), mRNA.					
Rattus norvegicus	RefSeq	GI_62658444-S	ILMN_50460	LOC498142	XM_573352.1	XM_573352.1		498142	62658444	XM_573352.1	LOC498142	XP_573352.1	ILMN_1359787	0002850524	S	1015	TTCCTGCACAGTGCCCTGTTGGGGAGAGAGAAGCTGGGAGGCCTATGCAT					PREDICTED: Rattus norvegicus similar to MGC108785 protein (LOC498142), mRNA.					
Rattus norvegicus	RefSeq	GI_19173807-S	ILMN_280124	ZFP384	NM_001034830.1	NM_001034830.1		171018	77812689	NM_001034830.1	Zfp384	NP_001030002.1	ILMN_1356146	0004560706	S	2664	GCCATCTGGGCTTTGCAGAGAAGGGAGAATTCAGGGCACACACAGGACTG	4	+	161158415-161158464	4q42	Rattus norvegicus zinc finger protein 384 (Zfp384), transcript variant 2, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]	The directed movement of molecules between the nucleus and the cytoplasm [goid 6913] [evidence IMP]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IMP]; Initiates or upregulates transcription in the presence of zinc [goid 42156] [evidence IMP]	Nmp4; Znf384; Ciz	Nmp4; Znf384; Ciz
Rattus norvegicus	RefSeq	GI_13929157-S	ILMN_291470	GIT1	NM_031814.1	NM_031814.1		83709	13929157	NM_031814.1	Git1	NP_114002.1	ILMN_1362046	0006370685	S	3025	AGCTCTGAGGGGCAGGGGAACCAGAGTAGTGGGACCAGCATTGGAAGTCA	10	-	66610288-66610337	10q26	Rattus norvegicus G protein-coupled receptor kinase interacting ArfGAP 1 (Git1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence TAS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 8277] [evidence IDA]; Any process that modulates the activity of the GTPase ARF [goid 32312] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IDA]; Increases the rate of GTP hydrolysis by the GTPase ARF [goid 8060] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665472	ILMN_272724	RGD1559899_PREDICTED	XR_009153.1	XR_009153.1		307851	109508907	XR_009153.1	RGD1559899_predicted		ILMN_1649879	0006840497	S	1677	GAGGACCCCTCTATTCGTCAATCAGGTGCCAGCCAAGAGCCGAAGAACTT				19q12	PREDICTED: Rattus norvegicus similar to mannose receptor precursor-like isoform 4 (predicted) (RGD1559899_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576958-S	ILMN_292815	OLR792	NM_001000378.1	NM_001000378.1		296044	47576958	NM_001000378.1	Olr792	NP_001000378.1	ILMN_1363424	0007050411	S	248	CTGACCTCTTCAGAAAGCACAAAGCCATCTCCTTGAACGGGTGCATCACT	3	+	97899797-97899846	3q34	Rattus norvegicus olfactory receptor 792 (Olr792), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr792; ratchr3-97795978-97796928_ORF	Olr792; ratchr3-97795978-97796928_ORF
Rattus norvegicus	RefSeq	GI_62643247-S	ILMN_61416	LOC499582	XM_574907.1	XM_574907.1		499582	62643247	XM_574907.1	LOC499582	XP_574907.1	ILMN_1362770	0001090070	S	1655	CATACCAGACTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTGGACAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC499582), mRNA.					
Rattus norvegicus	RefSeq	GI_38454203-S	ILMN_300473	CYP2B21	NM_198733.1	NM_198733.1		292728	38454203	NM_198733.1	Cyp2b21	NP_942028.1	ILMN_1355280	0003840280	S	1554	TGGAATCCAGGCCCAGGGTCACTGCTCACACCCTTACTCCTACTGCAGTT	1	-	81658418-81658467	1q21	Rattus norvegicus cytochrome P450, family 2, subfamily b, polypeptide 21 (Cyp2b21), mRNA.		The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence NAS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor [goid 16712] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence NAS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Cyp2b13	Cyp2b13
Rattus norvegicus	RefSeq	GI_47576198-S	ILMN_264758	OLR1343	NM_001001088.1	NM_001001088.1		405982	47576198	NM_001001088.1	Olr1343	NP_001001088.1	ILMN_1354312	0000380164	S	822	CTCTGCTGTGTACACTGTCCTCACACCCATGATGAATCCTTTGATCTACT	9	-	91696394-91696443	9q36	Rattus norvegicus olfactory receptor 1343 (Olr1343), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1343	Olr1343
Rattus norvegicus	RefSeq	GI_55742708-S	ILMN_273521	ELN	NM_012722.1	NM_012722.1		25043	55742708	NM_012722.1	Eln	NP_036854.1	ILMN_1358233	0003850066	S	3206	GTCCGACGACTTCTCACACTGGGAATAGCTCCCTTGTTCTTGTGGAATCC	12	+	23076659-23076708	12q12	Rattus norvegicus elastin (Eln), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The reorganization or renovation of existing blood vessels [goid 1974] [evidence IDA]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence ISS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence ISS]; Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IEA]; Assembly of a stress fiber, the bundle of microfilaments and other proteins found in fibroblasts [goid 43149] [evidence ISS]; Assembly of a stress fiber, the bundle of microfilaments and other proteins found in fibroblasts [goid 43149] [evidence IEA]; Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching [goid 48251] [evidence TAS]; The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers [goid 7519] [evidence IEA]; Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament [goid 30833] [evidence IEA]; Assembly of a stress fiber, the bundle of microfilaments and other proteins found in fibroblasts [goid 43149] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; A component of the extracellular matrix that enables the matrix to recoil after transient stretching [goid 30023] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]	TREL11; RATTREL11; Trela26; Trela	TREL11; RATTREL11; Trela26; Trela
Rattus norvegicus	RefSeq	GI_62646909-S	ILMN_282142	RGD1560480_PREDICTED	XM_575404.1	XM_575404.1		500048	62646909	XM_575404.1	RGD1560480_predicted	XP_575404.1	ILMN_1368354	0004760601	S	2157	GCCTGCTGACCGTTTATAATTTTCTCCTTCCCCGAAGCAACAAAACGCGG	4	-	49641346-49641395	4q22	PREDICTED: Rattus norvegicus similar to zinc finger protein 312 (predicted) (RGD1560480_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652618-S	ILMN_55286	TIGD5_PREDICTED	XM_235436.4	XM_235436.4		300034	109480917	XM_235436.4	Tigd5_predicted	XP_235436.4	ILMN_1360083	0003840746	S	1905	TTGTGCAGCTACGGTCCCTCATCACCATGGCACGGAGGCTTGGGGGCATT	7	+	113887743-113887792	7q34	PREDICTED: Rattus norvegicus tigger transposable element derived 5 (predicted) (Tigd5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113780-S	ILMN_280982	V1RE3	NM_001008907.1	NM_001008907.1		494259	57113780	NM_001008907.1	V1re3	NP_001008907.1	ILMN_1349095	0005390059	S	301	CTCTTGAGTGTCTTTCAAGCAATCACCATCAGCCCCAGGAACTCTTGCTG	1	-	57734441-57734490	1q12	Rattus norvegicus vomeronasal 1 receptor, E3 (V1re3), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645125-A	ILMN_299540	PSCDBP	NM_001012086.1	NM_001012086.1		311047	58865741	NM_001012086.1	Pscdbp	NP_001012086.1	ILMN_1376668	0006180097	S	1175	CCACCTGCCAAGATGAACTCCTGGCTTAGTGGGAAAGTGCAGATAGAGTG	3	-	39894332-39894381	3q21	Rattus norvegicus pleckstrin homology, Sec7 and coiled-coil domains, binding protein (Pscdbp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IEA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence ISS]	Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62664884-S	ILMN_66546	HPS4_PREDICTED	XM_222245.4	XM_222245.4		304555	109507778	XM_222245.4	Hps4_predicted	XP_222245.4	ILMN_1359975	0001450064	S	1682	TGAGGAGGTGTACCACAGCAGCCTGGCATCACTGAATGGGCTGGAAGTCC	19	+	14348305-14348314:14352254-14352293	19p11	PREDICTED: Rattus norvegicus Hermansky-Pudlak syndrome 4 homolog (human) (predicted) (Hps4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34869661-S	ILMN_48815	FBXO34_PREDICTED	XM_223938.3	XM_223938.3		305830	109501536	XM_223938.3	Fbxo34_predicted	XP_223938.2	ILMN_1357596	0006860161	S	2088	TCCGGGCTGTAAGTTAGGCCTTCATGACAATCACTGGTTACCCGCCTGCC	15	+	23502385-23502434	15p14	PREDICTED: Rattus norvegicus F-box only protein 34 (predicted) (Fbxo34_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663339-S	ILMN_59927	RBM24_PREDICTED	XM_214446.2	XM_214446.2		291031	62663339	XM_214446.2	Rbm24_predicted	XP_214446.2	ILMN_1350785	0005290139	S	5435	GCATAACCAAAGACCAAAGTCCTGACTCGTGCCTGGCTGGTATGCGTAGG				17p13	PREDICTED: Rattus norvegicus RNA binding motif protein 24 (predicted) (Rbm24_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643023-S	ILMN_50512	RGD1306809_PREDICTED	XM_345167.3	XM_345167.3		365699	109464478	XM_345167.3	RGD1306809_predicted	XP_345168.3	ILMN_1357630	0005860142	S	1529	GAGGACCACCACTAGAGTCAAGGTGACAATGGGATGACGCGTGTGCTGTC	2	+	58765979-58766028	2q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ30596 (predicted), transcript variant 2 (RGD1306809_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576306-S	ILMN_301308	OLR1511	NM_001000034.1	NM_001000034.1		287509	47576306	NM_001000034.1	Olr1511	NP_001000034.1	ILMN_1358983	0002940739	S	893	CTGATGTTCAGGCTGCCCTCTGGAGGGTACTCACAGGGAGACGCCCAGCA	10	+	61420436-61420485	10q24	Rattus norvegicus olfactory receptor 1511 (Olr1511), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1511; ratchr10-61433167-61434114_ORF	Olr1511; ratchr10-61433167-61434114_ORF
Rattus norvegicus	RefSeq	GI_62645972-S	ILMN_284083	RGD1308385_PREDICTED	XM_001054828.1	XM_001054828.1		311491	109470937	XM_001054828.1	RGD1308385_predicted	XP_001054828.1	ILMN_1353291	0000380670	S	412	GGCAAAGTTCTCCTTAGCCAGAAGCTGGAGAGGATCTTCAGAGAGTGGGC				3q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700010M22 (predicted) (RGD1308385_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605773-S	ILMN_297513	NFKB2	NM_001008349.1	NM_001008349.1		309452	56605773	NM_001008349.1	Nfkb2	NP_001008350.1	ILMN_1374155	0004760093	S	2717	ACAAGCTGGCTGGTGGAGACTTGGTGGGTCTATTGGAAGCCTTGTCCGAC	1	+	251527260-251527264:251527388-251527432	1q54	Rattus norvegicus nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100 (Nfkb2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex containing one Bcl protein and one or more copies of NF-kappaB2; formation of complexes of different stoichiometry depends on the Bcl3:NF-kappaB2 ratio, and allow Bcl3 to exert different regulatory effects on NF-kappaB2-dependent transcription [goid 33257] [evidence IEA]; A protein complex containing one Bcl protein and one or more copies of NF-kappaB2; formation of complexes of different stoichiometry depends on the Bcl3:NF-kappaB2 ratio, and allow Bcl3 to exert different regulatory effects on NF-kappaB2-dependent transcription [goid 33257] [evidence ISS]	The process whereby a relatively unspecialized precursor cell acquires the specialized features of a follicular dendritic cell [goid 2268] [evidence IEA]; The process whereby a relatively unspecialized precursor cell acquires the specialized features of a follicular dendritic cell [goid 2268] [evidence ISS]; The process by which germinal centers form. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation [goid 2467] [evidence IEA]; The process by which germinal centers form. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation [goid 2467] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an extracellular matrix [goid 30198] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence IEA]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1307189; MGC93816	RGD1307189; MGC93816
Rattus norvegicus	RefSeq	GI_27545437-S	ILMN_62010	RPL13A	NM_173340.1	NM_173340.1		317646	27545437	NM_173340.1	Rpl13a	NP_775462.1	ILMN_1363266	0001690348	S	6	CTGCCGAAGATGGCGGAGGGGCAGGTTCTAGTATTGGATGGCCGGAGCCA				1q22	Rattus norvegicus ribosomal protein L13A (Rpl13a), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence NAS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence NAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661860	ILMN_65095	LOC364321	XM_344346.2	XM_344346.2		364321	62661860	XM_344346.2	LOC364321	XP_344347.2	ILMN_1649960	0006400619	S	2120	CAGGGGGAGCTGAGCACAAACCGAGAGGCAACAGGTGGTCTGACTGCTGA				15p14	PREDICTED: Rattus norvegicus similar to T-cell receptor alpha-chain precursor (LOC364321), mRNA.					
Rattus norvegicus	RefSeq	GI_13929187-S	ILMN_274808	RTN4	XM_001065481.1	XM_001065481.1		83765	109501129	XM_001065481.1	Rtn4	XP_001065481.1	ILMN_1356186	0002690292	S	3890	GATCTTTAACCTTGCAGCTGCCCCACAGTGCTTGACCTCTGAGTCATTGG				14q22	PREDICTED: Rattus norvegicus reticulon 4 (Rtn4), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence ISS]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [evidence IEA]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [pmid 11126360] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30176] [pmid 10231557] [evidence IDA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of anti-apoptosis [goid 19987] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of anti-apoptosis [goid 19987] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell migration [goid 30334] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of anti-apoptosis [goid 19987] [pmid 11126360] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [pmid 10667797] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11126360] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62667520-S	ILMN_265166	RGD1562917_PREDICTED	XR_009526.1	XR_009526.1		367969	109462267	XR_009526.1	RGD1562917_predicted		ILMN_1353401	0000430528	S	623	ACCTGATGCAGCGAAAAGGGGGGTTGTCAAGGCTGAAAAGGGCAAGTAAG				Xq37	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1562917_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664362-S	ILMN_285456	RGD1565503_PREDICTED	XM_577613.1	XM_577613.1		502157	62664362	XM_577613.1	RGD1565503_predicted	XP_577613.1	ILMN_1355438	0007000204	S	499	GATCTGAAGACTGTGCTCCCAGACCACGGAGATCTGAAGACTGTGCTCCC	18	+	35205799-35205848	18p11	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1565503_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34852869-S	ILMN_280010	RGD1565565_PREDICTED	XR_007976.1	XR_007976.1		309817	109510203	XR_007976.1	RGD1565565_predicted		ILMN_1355881	0005130167	S	546	GTGCGTGCCCGTGAAATTCTACGTGGAGGACTCTGAACCAGGGGAGCAAG				20q12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700034H14 (predicted) (RGD1565565_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666644-S	ILMN_266849	RGD1564931_PREDICTED	XM_001065278.1	XM_001065278.1		302575	109511609	XM_001065278.1	RGD1564931_predicted	XP_001065278.1	ILMN_1370408	0000840500	S	1295	GAGGCAAAGACATCAGGAGTGCGATGGTTCCTCCTGCCAAAACCACATCC				Xq13	PREDICTED: Rattus norvegicus similar to Germ cell-less protein-like 2 (mGclh) (predicted) (RGD1564931_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659741-S	ILMN_284644	RGD1560634_PREDICTED	XM_001054873.1	XM_001054873.1		498286	109499054	XM_001054873.1	RGD1560634_predicted	XP_001054873.1	ILMN_1358651	0004070068	S	1024	CTGCCAGAGAGCTGACCCATAGACCCAGTGGAAGGACTTTTTGAAGGAGG				13q24	PREDICTED: Rattus norvegicus similar to signaling lymphocytic activation molecule (predicted) (RGD1560634_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393898-S	ILMN_262980	ITIH3	NM_017351.1	NM_017351.1		50693	8393898	NM_017351.1	Itih3	NP_059047.1	ILMN_1371014	0003360181	S	2702	GGCCTGGAACAGGACACAGAATGGGGCTCGTGGGAAGGACTGGGACAATA	16	-	6341059-6341108	16p16	Rattus norvegicus inter-alpha trypsin inhibitor, heavy chain 3 (Itih3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The chemical reactions and pathways involving hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine [goid 30212] [evidence IEA]	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]	PAIHC3	PAIHC3
Rattus norvegicus	RefSeq	GI_47606362-S	ILMN_264131	OLR69	NM_001001280.1	NM_001001280.1		365326	47606362	NM_001001280.1	Olr69	NP_001001280.1	ILMN_1351198	0006450670	S	783	GTCTGTAATCCACCGCTTTGGGAAGCAGGCGCCCCATCTAGTTCAGGTGG	1	-	160772303-160772352	1q32	Rattus norvegicus olfactory receptor 69 (Olr69), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr69	Olr69
Rattus norvegicus	RefSeq	GI_62641051-S	ILMN_67305	STIM1_PREDICTED	XM_341896.3	XM_341896.3		361618	109459147	XM_341896.3	Stim1_predicted	XP_341897.2	ILMN_1371376	0000540685	S	3958	TGGTCTTAGGTGGGTGCTAGGCTCTAGACTGCCTCGGTGCCCCCTGGACA	1	+	159925716-159925765	1q32	PREDICTED: Rattus norvegicus stromal interaction molecule 1 (predicted) (Stim1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649683-S	ILMN_64810	LOC502985	XM_578492.1	XM_578492.1		502985	62649683	XM_578492.1	LOC502985	XP_578492.1	ILMN_1373378	0003440070	S	3149	CGAGTCTCAAGGGGTTAAAGGCTCTGCTCAAACTTGCCCTGTCCAGAAGC					PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (LOC502985), mRNA.					
Rattus norvegicus	RefSeq	GI_62647351-S	ILMN_273579	HERC3_PREDICTED	XM_342701.2	XM_342701.2		362377	62647351	XM_342701.2	Herc3_predicted	XP_342702.2	ILMN_1359614	0004570390	S	3869	GTGCTGCTTAAAGAAAATAGGCCATGACTGCCTACTGCCTGGGCCTCCTG	4	+	87815364-87815413	4q24	PREDICTED: Rattus norvegicus hect domain and RLD 3 (predicted) (Herc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27675829-S	ILMN_280203	RGD1564617_PREDICTED	XM_001063928.1	XM_001063928.1		308353	109461012	XM_001063928.1	RGD1564617_predicted	XP_001063928.1	ILMN_1367819	0006900609	S	281	GCCTTTTGAACTGGGAGGTGACAAGAAGAGAAAGGATCCAGTTCTAAGCT				1q21	PREDICTED: Rattus norvegicus similar to large subunit ribosomal protein L36a (predicted) (RGD1564617_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663585	ILMN_274819	BTN2A2_PREDICTED	XM_001072372.1	XM_001072372.1		306957	109505826	XM_001072372.1	Btn2a2_predicted	XP_001072372.1	ILMN_1650123	0003130301	S	1553	GTCTTCACCGCGTGGCCGTCTTCCTGGACTGTGAGGGTGGGGATATTTCT				17q11	PREDICTED: Rattus norvegicus butyrophilin, subfamily 2, member A2 (predicted) (Btn2a2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_8393934-S	ILMN_270680	PADI2	NM_017226.1	NM_017226.1		29511	8393934	NM_017226.1	Padi2	NP_058922.1	ILMN_1367165	0003780465	S	4380	AGGGTGGGGGTAACGGCAGGAAGATGGCGGGAATGGGGCAGTATGAACTT	5	+	159805275-159805324	5q36	Rattus norvegicus peptidyl arginine deiminase, type II (Padi2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The hydrolysis of peptidyl-arginine to form peptidyl-citrulline [goid 18101] [evidence IEA]	Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3 [goid 4668] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	Pdi2	Pdi2
Rattus norvegicus	RefSeq	GI_62639373-S	ILMN_277636	TMEM147	NM_001038494.1	NM_001038494.1		292792	84042518	NM_001038494.1	Tmem147	NP_001033583.1	ILMN_1356221	0001570338	S	564	GTCTGGATGATAACACGCTATGACCTGTACCACACCTTCCGGCCTGCTGT	1	-	85772012-85772061	1q21	Rattus norvegicus transmembrane protein 147 (Tmem147), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1304706; MGC125231	RGD1304706; MGC125231
Rattus norvegicus	RefSeq	GI_14010840-S	ILMN_292365	NDRG4	NM_031967.1	NM_031967.1		64457	14010840	NM_031967.1	Ndrg4	NP_114173.1	ILMN_1365550	0006420739	S	2185	GTGGGCGTGATGTATGTGGTGTTGTGTGGGTGTTCTGAGGCAGGAGGACA	19	-	9808502-9808551	19p13	Rattus norvegicus N-myc downstream regulated gene 4 (Ndrg4), mRNA.		The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]		Ndr4; Bdm1; smap8	Ndr4; Bdm1; smap8
Rattus norvegicus	RefSeq	GI_62658696-S	ILMN_63566	LOC363899	XM_344096.2	XM_344096.2		363899	62658696	XM_344096.2	LOC363899	XP_344097.2	ILMN_1355374	0002900397	S	610	GGTGGAAGCAAAGGCTGACACTTCCCATGGTCCTGTGGTATGCAAAAGCC				12q12	PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC363899), mRNA.					
Rattus norvegicus	RefSeq	GI_40018603-S	ILMN_285898	TMBIM4	NM_199116.1	NM_199116.1		362884	40018603	NM_199116.1	Tmbim4	NP_954547.1	ILMN_1367688	0005720180	S	588	ATAGTCAGACGGTGGAACTGGTCTTGGCCTCTCTAGGTGCCCTCCTCTTC	7	+	59487657-59487706	7q22	Rattus norvegicus transmembrane BAX inhibitor motif containing 4 (Tmbim4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC73002; Cgi119	MGC73002; Cgi119
Rattus norvegicus	RefSeq	GI_62664953-S	ILMN_277405	RGD1305179_PREDICTED	XM_001068071.1	XM_001068071.1		291921	109508523	XM_001068071.1	RGD1305179_predicted	XP_001068071.1	ILMN_1356291	0005690672	S	2851	GGGAGCTGCCCACTGGGGAAGTACGGCAATGTGAAGACACCTTCCCAGAA				19p11	PREDICTED: Rattus norvegicus similar to Nedd4 binding protein 1 (predicted) (RGD1305179_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646434-S	ILMN_62313	LOC296404	XM_238298.2	XM_238298.2		296404	62646434	XM_238298.2	LOC296404	XP_238298.1	ILMN_1362694	0003850594	S	106	TGGCCGATGACTGGCAGAGGCGCAGAGGTCAAGAAAGATGCAGAGCGATC					PREDICTED: Rattus norvegicus hypothetical LOC296404 (LOC296404), mRNA.					
Rattus norvegicus	RefSeq	GI_13592066-S	ILMN_283722	RPS9	NM_031108.1	NM_031108.1		81772	13592066	NM_031108.1	Rps9	NP_112370.1	ILMN_2038795	0001240768	S	428	CATCAGGGTCCTCAAGCAGGTGGTGAACATCCCATCTTTCATTGTTCGCC	1	-	63824860-63824904:63825646-63825650	1q12	Rattus norvegicus ribosomal protein S9 (Rps9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13592066-S	ILMN_283722	RPS9	NM_031108.1	NM_031108.1		81772	13592066	NM_031108.1	Rps9	NP_112370.1	ILMN_2038796	0004070397	S	416	CCGCCAACGTCACATCAGGGTCCTCAAGCAGGTGGTGAACATCCCATCTT	1	-	63824872-63824904:63825646-63825662	1q12	Rattus norvegicus ribosomal protein S9 (Rps9), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The smaller of the two subunits of a ribosome [goid 15935] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652363-S	ILMN_65507	LOC500862	XM_576260.1	XM_576260.1		500862	62652363	XM_576260.1	LOC500862	XP_576260.1	ILMN_1360609	0002900433	S	704	CGTAGGCAAATGGTTGGAACTGGAAAACATCATCCTGAATAACCTGTTTG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500862), mRNA.					
Rattus norvegicus	RefSeq	GI_62663186-S	ILMN_274496	TGFBI	XM_001067964.1	XM_001067964.1		116487	109505440	XM_001067964.1	Tgfbi	XP_001067964.1	ILMN_1371070	0000730092	S	2458	GCCTCGGAGCTTACAAATGTGAACCAAGCAGTCCATCGTCCAGGAAAGCC				17p14	PREDICTED: Rattus norvegicus transforming growth factor, beta induced (Tgfbi), mRNA.	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence TAS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]	The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEP]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_62665592-S	ILMN_56796	LOC361786	XM_347000.2	XM_347000.2		361786	62665592	XM_347000.2	LOC361786	XP_347001.2	ILMN_1348916	0001410687	S	580	CGTGCAGGCATGAGACCTGGTGCTGGGGTTCTTTTTCCCACCCTTCTCCA					PREDICTED: Rattus norvegicus hypothetical LOC361786 (LOC361786), mRNA.					
Rattus norvegicus	RefSeq	GI_62664119	ILMN_64483	ZFP239_PREDICTED	XM_226100.3	XM_226100.3		307547	62664119	XM_226100.3	Zfp239_predicted	XP_226100.3	ILMN_1650495	0006370064	S	2301	AGTGGGTGCCAAGGCACGTGGAAGACTTTATTTGCACAGGGAGCGAGGTT				18p12	PREDICTED: Rattus norvegicus zinc finger protein 239 (predicted) (Zfp239_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52138607-S	ILMN_270339	VPS45	NM_172072.2	NM_172072.2		64516	52138607	NM_172072.2	Vps45	NP_742069.1	ILMN_1362991	0004060131	S	1911	CGGCTGGGACTGCCAATGATGAGCCCACCCCAACCCACTTGTGATTCTGT	2	-	190799638-190799687	2q34	Rattus norvegicus vacuolar protein sorting 45 homolog (S. cerevisiae) (Vps45), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis [goid 6904] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Vsp45a; MGC93104	Vsp45a; MGC93104
Rattus norvegicus	RefSeq	GI_54400715-S	ILMN_270832	PSMD12	NM_001005875.1	NM_001005875.1		287772	54400715	NM_001005875.1	Psmd12	NP_001005875.1	ILMN_1356243	0002760112	S	1265	TGCTAAAGTGGACAGGTTGGCTGGGGTCATCAACTTCCAGAGACCCAAGG	10	+	96907038-96907087	10q32.1	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 (Psmd12), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes, unfolds ubiquitinated proteins and translocates them to the proteasome core complex [goid 5838] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94696	MGC94696
Rattus norvegicus	RefSeq	GI_62661561-S	ILMN_271161	RGD1307201_PREDICTED	XM_001061572.1	XM_001061572.1		361047	109502501	XM_001061572.1	RGD1307201_predicted	XP_001061572.1	ILMN_1354821	0004670551	S	752	TGAGTGGTGTCGGTGGAGAAGCTGTAGAGACAGGGCCCGTGACCAGTGAT				15p12	PREDICTED: Rattus norvegicus similar to chromosome 13 open reading frame 3 (predicted) (RGD1307201_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57113798-S	ILMN_277421	V1RC37	NM_001008926.1	NM_001008926.1		494274	57113798	NM_001008926.1	V1rc37	NP_001008926.1	ILMN_1357923	0003140692	S	641	GCATCAGAACCCTAAGAGCATCCCCTGAGAAAAGAGCCACCCGGACCATC	4	-	86555485-86555534	4q24	Rattus norvegicus vomeronasal 1 receptor, C37 (V1rc37), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656325-I	ILMN_297014	PLSCR3	NM_001012139.2	NM_001012139.2		360549	67514576	NM_001012139.2	Plscr3	NP_001012139.1	ILMN_1375871	0006660286	S	41	TTTCTTATTCTGGGGGCTTCAGGTGCCTCCCAAGAGACCCTGGGCCGGTG	10	+	56687126-56687147:56687358-56687385	10q24	Rattus norvegicus phospholipid scramblase 3 (Plscr3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Pls3	Pls3
Rattus norvegicus	RefSeq	GI_58865847-A	ILMN_297014	PLSCR3	NM_001012139.2	NM_001012139.2		360549	67514576	NM_001012139.2	Plscr3	NP_001012139.1	ILMN_1376373	0003390494	S	1454	CAGCAGGGCTTGTGGGTAAAAGGCAAGCGGCACCAAAGATGGCAGATACC	10	+	56691309-56691358	10q24	Rattus norvegicus phospholipid scramblase 3 (Plscr3), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]	Pls3	Pls3
Rattus norvegicus	RefSeq	GI_54262169-S	ILMN_303019	RPL31	NM_022506.2	NM_022506.2		64298	54262169	NM_022506.2	Rpl31	NP_071951.1	ILMN_1368903	0004070195	S	777	GGGGTTACTCTGTGGTGGTGCTGCTTGTTCTGTAGACTAGGTTGGCCTGG	9	+	38443102-38443151	9q21	Rattus norvegicus ribosomal protein L31 (Rpl31), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72834	MGC72834
Rattus norvegicus	RefSeq	GI_47576632-S	ILMN_291540	OLR1682	NM_001000890.1	NM_001000890.1		405191	47576632	NM_001000890.1	Olr1682	NP_001000890.1	ILMN_1349746	0001450021	S	586	GAGCTTGCTTTGTCTGTGGTATGCATTTTTCTTTCAGCTGTTCCTCTGTG	20	-	305782-305831	20p12	Rattus norvegicus olfactory receptor 1682 (Olr1682), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1682	Olr1682
Rattus norvegicus	RefSeq	GI_62646096	ILMN_263437	LOC499924	XM_575268.1	XM_575268.1		499924	62646096	XM_575268.1	LOC499924	XP_575268.1	ILMN_1650208	0000610450	S	1520	GGATGTCATTGAGAATGCGGTCGTGCTCACAGTGGCTCCATGAGGCAGTA	3	+	144316794-144316806:144317595-144317624:144317625-144317631	3q41	PREDICTED: Rattus norvegicus Long palate, lung and nasal epithelium carcinoma associated protein 3 (LOC499924), mRNA.					
Rattus norvegicus	RefSeq	GI_19424177-S	ILMN_292916	FOLR1	NM_133527.1	NM_133527.1		171049	19424177	NM_133527.1	Folr1	NP_598211.1	ILMN_1358615	0003290170	S	483	GAGCAACTGGCTCAAGGGATGGAACTGGACCTCGGGGCATAATGAGTGCC	1	-	159315566-159315581:159315729-159315762	1q32	Rattus norvegicus folate receptor 1 (adult) (Folr1), mRNA.	Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; Tethered to the plasma membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane [goid 46658] [evidence IDA]	The directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 15884] [evidence TAS]; The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 46655] [evidence IEA]; The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 46655] [evidence ISS]	Interacting selectively with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 5542] [evidence TAS]; Enables the directed movement of folic acid (pteroylglutamic acid) into, out of, within or between cells. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines [goid 8517] [evidence TAS]	Fbp1	Fbp1
Rattus norvegicus	RefSeq	GI_62640434-S	ILMN_48607	LOC499173	XM_579924.1	XM_579924.1		499173	62640434	XM_579924.1	LOC499173	XP_579924.1	ILMN_1351131	0005420026	S	530	CTGCTCGGGGCTGAGGGAGAAGCTTGGTATCCAGAGGAAACTGACTGGCT					PREDICTED: Rattus norvegicus LOC499173 (LOC499173), mRNA.					
Rattus norvegicus	RefSeq	GI_62666180-S	ILMN_62004	LOC502440	XM_577921.1	XM_577921.1		502440	62666180	XM_577921.1	LOC502440	XP_577921.1	ILMN_1365406	0003780008	S	215	CGCACTCCCAAGGCCCTGTACATCTTTAAGGCAGGAACTGGCCAGGCAAA					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502440), mRNA.					
Rattus norvegicus	RefSeq	GI_62641724-S	ILMN_275652	BBS1_PREDICTED	XM_001069507.1	XM_001069507.1		309156	109463357	XM_001069507.1	Bbs1_predicted	XP_001069507.1	ILMN_1374704	0006100138	S	1687	GCAAGGGCATCTCAGACATAATCAAGGTGCTCGTGCTCCGGGAAGGCCAG				1q43	PREDICTED: Rattus norvegicus Bardet-Biedl syndrome 1 homolog (human) (predicted) (Bbs1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658851-S	ILMN_51559	LOC288654	XM_213773.4	XM_213773.4		288654	109495867	XM_213773.4	LOC288654	XP_213773.4	ILMN_1361432	0005910750	S	3730	CGAGGCAGCACTAAGCCGAATGCCATCTCCTGGAGGAAGAATCACTTTAC	12	+	33453605-33453654	12q15	PREDICTED: Rattus norvegicus similar to M-phase phosphoprotein 9 (LOC288654), mRNA.					
Rattus norvegicus	RefSeq	GI_62638291-S	ILMN_287561	LOC679977	XM_001055157.1	XM_001055157.1		679977	109457521	XM_001055157.1	LOC679977	XP_001055157.1	ILMN_1368221	0006980292	S	1020	GGGGCTAGATGAAACAGGAGGAGAGGTTCCCAACCAGAGAACCAAAATGC	1	-	2136259-2136308	1p13	PREDICTED: Rattus norvegicus similar to retinoic acid early transcript 1L (predicted) (LOC679977), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62642260-S	ILMN_56004	LOC309478	XM_220019.3	XM_220019.3		309478	62642260	XM_220019.3	LOC309478	XP_220019.2	ILMN_1375232	0005360286	S	6084	CCGTTTACACATGCCAACTGTAACAGTAGGTCCTAAACGGGCCCATTCCC				1q54	PREDICTED: Rattus norvegicus similar to KIAA0335 (predicted) (LOC309478), mRNA.					
Rattus norvegicus	RefSeq	GI_47576282-S	ILMN_279609	OLR1291	NM_001000797.1	NM_001000797.1		405081	47576282	NM_001000797.1	Olr1291	NP_001000797.1	ILMN_1368498	0004230066	S	665	TCTTCATAATTGTCAGCATCCTCCGCATTCGCTCCCGGGAGGGCAGATCT	8	-	41585065-41585114	8q22	Rattus norvegicus olfactory receptor 1291 (Olr1291), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1291	Olr1291
Rattus norvegicus	RefSeq	GI_41054849-S	ILMN_292735	SLC4A8	NM_199497.1	NM_199497.1		315311	41054849	NM_199497.1	Slc4a8	NP_955791.1	ILMN_1353497	0004730154	S	3428	CCTGTTCTTGGTCATCTCGAAGCCACATGGAAGCATTCAGTCACTCCCGG				7q36	Rattus norvegicus solute carrier family 4 (anion exchanger), member 8 (Slc4a8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells [goid 6820] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA];  [goid 5452] [evidence IEA]; Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other [goid 8509] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62643827-S	ILMN_67137	PGLYRP4_PREDICTED	XM_227383.4	XM_227383.4		310611	109465116	XM_227383.4	Pglyrp4_predicted	XP_227383.4	ILMN_1371800	0003450670	S	858	CCTTGTGGGCCAGGATGGTGGTGTTTATGAAGGCGTGGGCTGGAATAACC	2	+	183036803-183036852	2q34	PREDICTED: Rattus norvegicus peptidoglycan recognition protein 4 (predicted) (Pglyrp4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650498-S	ILMN_277832	RGD1564451_PREDICTED	XM_001068999.1	XM_001068999.1		313974	109479087	XM_001068999.1	RGD1564451_predicted	XP_001068999.1	ILMN_1368194	0002760670	S	3945	ATGTGGCATGTGTGTGCGGACTCTTGGATGCTTCACGCCTACTCCACTGG				6q15	PREDICTED: Rattus norvegicus similar to Tribbles homolog 2 (predicted) (RGD1564451_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639665-S	ILMN_272609	MYH14	XM_001080622.1	XM_001080622.1		308572	109461888	XM_001080622.1	Myh14	XP_001080622.1	ILMN_1365841	0002570706	S	6330	TGGATGTCAAGGATGTCCAGTCTGCTCCTGTTTTCAGCAGGCCTGTCCCC				1q22	PREDICTED: Rattus norvegicus myosin, heavy polypeptide 14 (Myh14), mRNA.	Bundle of microfilaments and other proteins found in fibroblasts [goid 1725] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]	Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, requiring the presence of an actin filament to accelerate release of ADP and phosphate [goid 30898] [evidence ISS]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_11560015-S	ILMN_291627	HTR1B	NM_022225.1	NM_022225.1		25075	11560015	NM_022225.1	Htr1b	NP_071561.1	ILMN_1360702	0000050315	S	689	AAGCCCGCTCTCGGATTTTGAAACAGACACCCAACAAGACCGGCAAGCGC	8	-	86700510-86700559	8q31	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 1B (Htr1b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IDA]; The specific actions or reactions of an organism relating to the intake of liquids, especially water [goid 42756] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance [goid 51385] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate [goid 51967] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IDA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_8393758-S	ILMN_274289	MBP	NM_001025293.1	NM_001025293.1		24547	70166261	NM_001025293.1	Mbp	NP_001020464.1	ILMN_1359702	0006220132	S	424	ACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAAAGGGGAGAGGC	18	+	79044308-79044312:79046192-79046227:79046630-79046638	18q12.3	Rattus norvegicus myelin basic protein (Mbp), transcript variant 3, mRNA.	An axon part that is located between the nodes of Ranvier and surrounded by compact myelin sheath [goid 33269] [evidence ISS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence TAS]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence ISS]; The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs [goid 43218] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system [goid 43209] [evidence IEA]	The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IMP]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence IMP]	The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17610306] [evidence IPI]; The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve [goid 19911] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13592070-S	ILMN_288262	RPS11	NM_031110.1	NM_031110.1		81774	13592070	NM_031110.1	Rps11	NP_112372.1	ILMN_1373412	0004230411	S	458	GAAGCAGTTCCAGAAGTTCTGAGGGGGGACTGTAGCCAATGCTCTAGAAC	1	-	95596770-95596798:95596799-95596819	1q22	Rattus norvegicus ribosomal protein S11 (Rps11), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575964-S	ILMN_286826	OLR1505	NM_001000032.1	NM_001000032.1		287506	47575964	NM_001000032.1	Olr1505	NP_001000032.1	ILMN_1350419	0005890603	S	810	GGACACTGTCATGTCTATGATGTACACAGTGGTGACACCCATGTTGAATC	10	+	61252708-61252757	10q24	Rattus norvegicus olfactory receptor 1505 (Olr1505), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1505	Olr1505
Rattus norvegicus	RefSeq	GI_62666421-S	ILMN_51771	LOC317626	XM_229223.3	XM_229223.3		317626	62666421	XM_229223.3	LOC317626	XP_229223.1	ILMN_1354949	0005720113	S	466	TCGCCGAGTCACAAGATGCTGATTATCCAGGCACTCCACCAAGGCCCCTC					PREDICTED: Rattus norvegicus similar to testis expressed sequence 13A (LOC317626), mRNA.					
Rattus norvegicus	RefSeq	GI_62655935-S	ILMN_62876	RGD1305506_PREDICTED	XM_213249.4	XM_213249.4		287178	109487948	XM_213249.4	RGD1305506_predicted	XP_213249.4	ILMN_1369560	0004560048	S	1017	AACAGACACTAAACCCATCAAAAACAGCACCAAGCACCTTTTGGACACAG	10	+	17359230-17359279	10q12	PREDICTED: Rattus norvegicus similar to dendritic cell-derived ubiquitin-like protein (predicted) (RGD1305506_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642610-S	ILMN_51617	LOC499392	XM_574708.1	XM_574708.1		499392	62642610	XM_574708.1	LOC499392	XP_574708.1	ILMN_1363451	0003780114	S	102	CCCGGGACGTGTTGCCTAGCTGTTTGTTCTCAGAGCCCCAAGAAAGACTC					PREDICTED: Rattus norvegicus similar to F730047E07Rik protein (LOC499392), mRNA.					
Rattus norvegicus	RefSeq	GI_47576608-S	ILMN_302716	OLR860	NM_001000822.1	NM_001000822.1		405111	47576608	NM_001000822.1	Olr860	NP_001000822.1	ILMN_1374003	0005050446	S	121	TCAGTGCTGGGCAACGGGATCATCGTCATGCTGGTCTGCCTGGACACACA	5	-	139224036-139224085	5q36	Rattus norvegicus olfactory receptor 860 (Olr860), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr860	Olr860
Rattus norvegicus	RefSeq	GI_62663987-S	ILMN_283520	MASTL_PREDICTED	XM_001053405.1	XM_001053405.1		307169	109506246	XM_001053405.1	Mastl_predicted	XP_001053405.1	ILMN_1373768	0002480132	S	985	CCTTCGTATCCAGTGTGGAGTCAGAATGTCACAGCAGTCCCAAATGGGAG				17q12.3	PREDICTED: Rattus norvegicus microtubule associated serine/threonine kinase-like (predicted) (Mastl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663985-S	ILMN_283520	MASTL_PREDICTED	XM_001053405.1	XM_001053405.1		307169	109506246	XM_001053405.1	Mastl_predicted	XP_001053405.1	ILMN_1359099	0003290315	S	2549	GGAGAATCTGCAGCATCAGACTATGCCTTTCGTGCCCCAACCAGACAACG				17q12.3	PREDICTED: Rattus norvegicus microtubule associated serine/threonine kinase-like (predicted) (Mastl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718097-S	ILMN_272273	LOC689690	XM_001055335.1	XM_001055335.1		689690	109513966	XM_001055335.1	LOC689690	XP_001055335.1	ILMN_1353899	0002650440	S	641	TATTAGGCCGACCTGGGCCTCTGGGGTCATACCAGGTTTAACAAAGCTCA	Un|NW_047990.1	-	879154-879203		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d, transcript variant 1 (LOC689690), mRNA.					
Rattus norvegicus	RefSeq	GI_62640957-S	ILMN_284861	SPCS2_PREDICTED	XM_001066421.1	XM_001066421.1		293142	109462489	XM_001066421.1	Spcs2_predicted	XP_001066421.1	ILMN_1349130	0004210400	S	786	CTCCTTCTGCTGGATCATACGAATTACTGGTGGGTAGGGGAAAAGACAGG				1q32	PREDICTED: Rattus norvegicus signal peptidase complex subunit 2 homolog (S. cerevisiae) (predicted) (Spcs2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46391105-S	ILMN_284516	ARL10	NM_207165.1	NM_207165.1		306767	46391105	NM_207165.1	Arl10	NP_997048.1	ILMN_1361239	0006350731	S	474	TGTGAATGAGGTGGACGTGCTGGTGTTCATGGTGGACTCGACTGACCGGC	17	-	16096722-16096771	17p14	Rattus norvegicus ADP-ribosylation factor-like 10 (Arl10), mRNA.		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758807-S	ILMN_294223	EPB4.1L3	NM_053927.1	NM_053927.1		116724	16758807	NM_053927.1	Epb4.1l3	NP_446379.1	ILMN_1363875	0004570156	S	4456	ACACTGTCAACTGCATCACAGCCCGTCGTGAATGATGTCACCGCATCGCG	9	+	108426867-108426916	9q38	Rattus norvegicus erythrocyte protein band 4.1-like 3 (Epb4.1l3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region [goid 19898] [evidence IEA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]	Kiaa0987; Epb41l3	Kiaa0987; Epb41l3
Rattus norvegicus	RefSeq	GI_62717738-S	ILMN_68032	LOC503280	XM_578817.1	XM_578817.1		503280	62717738	XM_578817.1	LOC503280	XP_578817.1	ILMN_1366745	0004590465	S	319	GGGAATCTAAGAAGATTGACTGCCACATGCTCGCTGCCAGAAAACCACCT					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC503280), mRNA.					
Rattus norvegicus	RefSeq	GI_62665830-A	ILMN_299381	PCBP3	NM_001011945.1	NM_001011945.1		294336	58865459	NM_001011945.1	Pcbp3	NP_001011945.1	ILMN_1376896	0002100601	S	1842	GCAGGGAGTGTCTGGAAGAGGAGGGACTTGGGGAGTATCTAAGGAGCAGG	20	+	12290063-12290112	20p12	Rattus norvegicus poly(rC) binding protein 3 (Pcbp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]		Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62655901-S	ILMN_60910	RGD1308952	XM_220262.4	XM_220262.4		303002	109487934	XM_220262.4	RGD1308952	XP_220262.4	ILMN_1348987	0005340528	S	2615	ACCCATAGCAGCTGGACCTGAGCCTGAGCACTGTCTGGAGTCTGGGCACA	10	-	15249016-15249065	10q12	PREDICTED: Rattus norvegicus similar to mKIAA0665 protein (RGD1308952), mRNA.					
Rattus norvegicus	RefSeq	GI_7549741-S	ILMN_297065	ANDPRO	NM_012718.1	NM_012718.1		25030	7549741	NM_012718.1	Andpro	NP_036850.1	ILMN_1364847	0001780270	S	587	CTCTGAGACTGACTGGCCTGTTACCCAACACTTGCAGACATTGATTCTAC	3	-	138085847-138085896	3q41	Rattus norvegicus androgen regulated 20 kDa protein (Andpro), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence IMP]	 [goid 4869] [evidence IEA]	RATANDPRO; Crp1	RATANDPRO; Crp1
Rattus norvegicus	RefSeq	GI_62649174-S	ILMN_264109	ASAH3L_PREDICTED	XM_001053269.1	XM_001053269.1		313339	109476715	XM_001053269.1	Asah3l_predicted	XP_001053269.1	ILMN_1364753	0005550195	S	1199	GCTTGCCATAGCCCCCACCATTTCCAGGCTCTCTCATTACACAGGAGTCA				5q32	PREDICTED: Rattus norvegicus N-acylsphingosine amidohydrolase 3-like (predicted) (Asah3l_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758657-S	ILMN_269912	MPRIP	NM_001034022.1	NM_001034022.1		116504	77404360	NM_001034022.1	Mprip	NP_001029194.1	ILMN_1361515	0003990168	S	3040	CTCATGGGATAACTGAGTCGCGCCCGCTTCCAAGTCCCCTGTCGTAGTCT	10	+	46086872-46086887:46086888-46086916:46089901-46089905	10q22	Rattus norvegicus myosin phosphatase Rho interacting protein (Mprip), transcript variant 2, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]		Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]	Rhoip3; MGC114284; p116Rip	Rhoip3; MGC114284; p116Rip
Rattus norvegicus	RefSeq	GI_62651403-S	ILMN_62235	LOC299551	XM_234830.2	XM_234830.2		299551	62651403	XM_234830.2	LOC299551	XP_234830.1	ILMN_1373370	0004060519	S	312	CAGTGTGGACATTGCAGATACTGCCACATACTACTGTGCTCGGAGACCAC				6q33	PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC299551), mRNA.					
Rattus norvegicus	RefSeq	GI_62655412-S	ILMN_68218	LOC501186	XM_580170.1	XM_580170.1		501186	62655412	XM_580170.1	LOC501186	XP_580170.1	ILMN_1350353	0001770215	S	477	GTCACAGGGATGCCAACAGGTGAGGCAGGAACAAGGTCTGATAATGGCCT					PREDICTED: Rattus norvegicus LOC501186 (LOC501186), mRNA.					
Rattus norvegicus	RefSeq	GI_62652766-S	ILMN_62952	LOC503160	XM_578684.1	XM_578684.1		503160	62652766	XM_578684.1	LOC503160	XP_578684.1	ILMN_1354611	0006450333	S	202	GCCTTCCAATCTGCCCCAAGAGTCCTCAAATTATTGGGATCCTGGGTATC					PREDICTED: Rattus norvegicus similar to Ly6-C antigen gene (LOC503160), mRNA.					
Rattus norvegicus	RefSeq	GI_9507090-S	ILMN_269839	SFRS5	NM_019257.1	NM_019257.1		29667	9507090	NM_019257.1	Sfrs5	NP_062130.1	ILMN_1360269	0004670184	S	2366	GATGGGGTTGGGCTGGATTTCTTTGTAGATGTGGACCACCAAGGGGTTGG	6	+	104732663-104732712	6q24	Rattus norvegicus splicing factor, arginine/serine-rich 5 (Sfrs5), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing [goid 50733] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	HRS; SRp40	HRS; SRp40
Rattus norvegicus	RefSeq	GI_11968105-S	ILMN_289244	CD151	NM_022523.1	NM_022523.1		64315	11968105	NM_022523.1	Cd151	NP_071968.1	ILMN_1366115	0001240025	S	1290	AATCCGAGCATACCACTACACGGTGGGTAAGAGCAGGTGGGAAGGGGCCT	1	+	201657615-201657664	1q41	Rattus norvegicus CD151 molecule (Raph blood group) (Cd151), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62644200-S	ILMN_288524	LOC499691	NM_001024305.1	NM_001024305.1		499691	66730314	NM_001024305.1	LOC499691	NP_001019476.1	ILMN_1359746	0004730008	S	1551	GCAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGGCAAGCAAACATAA	2	-	204510451-204510500	2q34	Rattus norvegicus similar to sarcoma antigen NY-SAR-27 (LOC499691), mRNA.					
Rattus norvegicus	RefSeq	GI_62642304-S	ILMN_58198	LOC502388	XM_577866.1	XM_577866.1		502388	62642304	XM_577866.1	LOC502388	XP_577866.1	ILMN_1351332	0001580471	S	332	GGGCTCTGACCGCCAGTGGAATGATTGTGACAGGATATTGGACAGCTGGG					PREDICTED: Rattus norvegicus similar to Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2) (LOC502388), mRNA.					
Rattus norvegicus	RefSeq	GI_62641796-S	ILMN_280680	RASGRP2_PREDICTED	XM_001071741.1	XM_001071741.1		361714	109463417	XM_001071741.1	Rasgrp2_predicted	XP_001071741.1	ILMN_1366254	0006860373	S	1929	TCCAGAGATCCGTGAAGAGGAGGTGCAGACTGTGGAAGATGGTGTGTTCG				1q43	PREDICTED: Rattus norvegicus RAS guanyl releasing protein 2 (calcium and DAG-regulated) (predicted) (Rasgrp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660720-S	ILMN_51468	LOC305476	XM_223559.3	XM_223559.3		305476	62660720	XM_223559.3	LOC305476	XP_223559.1	ILMN_1359550	0004230368	S	655	GGAGCGCAAAACGCACCAGTTCTAACCTGCTTTGCTCCACGCCAACCCCT				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921536K21 (predicted) (LOC305476), mRNA.					
Rattus norvegicus	RefSeq	GI_62643436-S	ILMN_47813	LOC499614	XM_579986.1	XM_579986.1		499614	62643436	XM_579986.1	LOC499614	XP_579986.1	ILMN_1360044	0005900600	S	681	GCTAGCCCTACCCACAGTGGTCTATGCTTCCAGATTGGCTGGCAGTAGGC					PREDICTED: Rattus norvegicus LOC499614 (LOC499614), mRNA.					
Rattus norvegicus	RefSeq	GI_31543513-S	ILMN_280395	LGMN	NM_022226.2	NM_022226.2		63865	31543513	NM_022226.2	Lgmn	NP_071562.2	ILMN_1365385	0003940494	S	1403	AATGTGAACCAACCGGAGTGAACCAAGCGGAGACCGGAAGGGCGGAGTCA	6	-	126669268-126669317	6q32	Rattus norvegicus legumain (Lgmn), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence ISS]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organism to reach its usual body size [goid 40015] [evidence IEA]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]	Prsc1; MGC105274	Prsc1; MGC105274
Rattus norvegicus	RefSeq	GI_62641785-S	ILMN_299528	SNX15	NM_001024752.1	NM_001024752.1		293691	67078511	NM_001024752.1	Snx15	NP_001019923.1	ILMN_1356358	0001450341	S	1342	GTGGCATCTGGGCCACTTATCTGTCAGTTCACACATCTAGAGCCAGGGTC	1	-	208892488-208892537	1q43	Rattus norvegicus sorting nexin 15 (Snx15), mRNA.		Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661988-S	ILMN_49628	LOC364426	XM_344435.2	XM_344435.2		364426	62661988	XM_344435.2	LOC364426	XP_344436.2	ILMN_1352603	0003060458	S	2229	GGCAACCACGACCAAGGCAACCCTTATAAAAGCCTTGTCATGAACACAGG					PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG20540 (LOC364426), mRNA.					
Rattus norvegicus	RefSeq	GI_62638664-S	ILMN_60779	DACT2_PREDICTED	XM_218002.4	XM_218002.4		308212	109457896	XM_218002.4	Dact2_predicted	XP_218002.4	ILMN_1372133	0000840193	S	2576	TTCACTCTACCATTGCCGAAACCAGCGAGGACGAGGAGGCTAGCGACCAC	1	-	53084787-53084836	1q12	PREDICTED: Rattus norvegicus dapper homolog 2, antagonist of beta-catenin (xenopus) (predicted) (Dact2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645130-S	ILMN_65924	LOC311051	XM_229941.3	XM_229941.3		311051	62645130	XM_229941.3	LOC311051	XP_229941.3	ILMN_1359376	0004200672	S	843	GAAGTTAATGGCCGAACAGTCAGTGAAAGACAGAGAAAGCCCCGCGCTGC				3q21	PREDICTED: Rattus norvegicus similar to BC062650 protein (LOC311051), mRNA.					
Rattus norvegicus	RefSeq	GI_62661109-S	ILMN_59473	LOC498449	XM_573708.1	XM_573708.1		498449	62661109	XM_573708.1	LOC498449	XP_573708.1	ILMN_1363881	0003390131	S	2160	CCTTAAGCTGTTAAGTGTAAGTGCGGAGTAGGAACTGCTCAGTCGATTGG					PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2 E1 (Ubiquitin-protein ligase E1) (Ubiquitin carrier protein E1) (UbcM3) (LOC498449), mRNA.					
Rattus norvegicus	RefSeq	GI_62658570-A	ILMN_286952	ZSCAN21	NM_001012021.1	NM_001012021.1		304342	59709428	NM_001012021.1	Zscan21	NP_001012021.1	ILMN_1376345	0003440750	S	1735	TCCAAGCATCAGAGAGTCCACACTGGAGAGGGAGAGGTACAGTAAGTGTC	12	+	17577670-17577714:17577715-17577719	12q11	Rattus norvegicus zinc finger and SCAN domain containing 21 (Zscan21), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654018-S	ILMN_59212	COL12A1	XM_243912.4	XM_243912.4		25683	109483718	XM_243912.4	Col12a1	XP_243912.4	ILMN_1355310	0003990044	S	9284	TCGTACCTGTGGAGCCTGAGAGGACGGCAGAATACGAGGATGACTACGGG	8	-	84642240-84642289	8q31	PREDICTED: Rattus norvegicus procollagen, type XII, alpha 1 (Col12a1), mRNA.	A collagen homotrimer of alpha1(XII) chains; type XII collagen triple helices may link sheet-forming or fibrillar collagens to other structures [goid 5595] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62656515-S	ILMN_53767	RGD1565378_PREDICTED	XM_340842.3	XM_340842.3		360565	109488506	XM_340842.3	RGD1565378_predicted	XP_340843.3	ILMN_1369721	0003390017	S	1108	CCAAGACTGATTAGAGGCCGAGTTCACAGGTGTGTTGGGCACTATGACCC	10	+	60221457-60221506	10q24	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565378_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13027417-S	ILMN_296701	KCNS2	NM_023966.1	NM_023966.1		66022	13027417	NM_023966.1	Kcns2	NP_076456.1	ILMN_1368190	0005690048	S	1483	TGAGAGCGCCATGCGCAGCTGTGACTTTGGGGATGGAATGAAGGAGGTCC	7	+	70280037-70280086	7q22	Rattus norvegicus potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 (Kcns2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]		
Rattus norvegicus	Unigene	Rn.20024	ILMN_161550	RN.20024	Rn.20024		Rn.20024		23721711	BU758808			ILMN_1530202	0006980707	S	75	AGAATTACATAGTTTGATTGGGCATCAGCATTTAGTAACATTCACTTCAA					UI-R-FF0-cow-k-21-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cow-k-21-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62643839-S	ILMN_67658	LOC499661	XM_579998.1	XM_579998.1		499661	62643839	XM_579998.1	LOC499661	XP_579998.1	ILMN_1374163	0003710397	S	441	AGGTGGAAAAGAAGCATCTGGTCTGCAGCTTCCTCGATCTCAAGCTCTTC					PREDICTED: Rattus norvegicus LOC499661 (LOC499661), mRNA.					
Rattus norvegicus	RefSeq	GI_62642881-S	ILMN_65669	LOC499521	XM_574845.1	XM_574845.1		499521	62642881	XM_574845.1	LOC499521	XP_574845.1	ILMN_1370262	0006100168	S	3408	ACCCACGCAAACGTACTAAACTGATAAAGCCTGAGGCGCACAGCGCACGC					PREDICTED: Rattus norvegicus similar to RGD1309360_predicted protein (LOC499521), mRNA.					
Rattus norvegicus	RefSeq	GI_62663426-S	ILMN_54038	RGD1309020	XM_214453.4	XM_214453.4		291060	109504776	XM_214453.4	RGD1309020	XP_214453.3	ILMN_1362599	0000870278	S	846	GGCGATCGGCTTCGGTAGATTCACGGCAGTCTGGTGGGAGTTATTTGGAT	17	-	32825404-32825453	17p12	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530403A03 (RGD1309020), mRNA.	The minor (U12-dependent) spliceosome is composed of the snRNPs, U11, U12, U4atac, U6atac, and U5 (which is also a component of the major spliceosome). This minor form of the spliceosome is responsible for the splicing of the majority of introns with atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site [goid 5689] [evidence ISS]				
Rattus norvegicus	RefSeq	GI_62651921-S	ILMN_265146	RGD1559940_PREDICTED	XM_001081019.1	XM_001081019.1		503115	109517009	XM_001081019.1	RGD1559940_predicted	XP_001081019.1	ILMN_1358467	0004120072	S	290	CGGAATGGAGGGAAGACAGAAATGCAGAATTTCAAAGGCGAGTTGCCACC					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) (predicted) (RGD1559940_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653987-S	ILMN_57398	LOC315732	XM_236339.3	XM_236339.3		315732	62653987	XM_236339.3	LOC315732	XP_236339.3	ILMN_1354564	0005720040	S	6420	GGAGGCTGTGAAAATGAATCAGGAGATGCCCGTGGAAGGGAACCAGTGCC				8q24	PREDICTED: Rattus norvegicus similar to Nuclear membrane binding protein NUCLING (LOC315732), mRNA.					
Rattus norvegicus	RefSeq	GI_62664796	ILMN_296040	RGD1308009	XM_001060702.1	XM_001060702.1		291841	109507688	XM_001060702.1	RGD1308009	XP_001060702.1	ILMN_1650113	0000450338	S	7520	CTCCTGACTTTCCTAGCCCTTTGGTTCTCAGGCGTCTGCCCCAACAACTG	19	+	9802988-9803037	19p13	PREDICTED: Rattus norvegicus similar to KIAA1007 protein; adrenal gland protein AD-005 (RGD1308009), mRNA.			Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13928993-S	ILMN_268324	OLR226	NM_031710.1	NM_031710.1		65140	13928993	NM_031710.1	Olr226	NP_113898.1	ILMN_1371436	0006520452	S	626	TTTTTATTCTGCTGGGACCGCTCTCTGTCACTGGGGCATCCTACATGGCC	1	-	164256763-164256812	1q33	Rattus norvegicus olfactory receptor 226 (Olr226), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olfr41	Olfr41
Rattus norvegicus	RefSeq	GI_62650146-S	ILMN_271717	TRP73_PREDICTED	XM_001077013.1	XM_001077013.1		362675	109477774	XM_001077013.1	Trp73_predicted	XP_001077013.1	ILMN_1359340	0006350671	S	2887	CGTGCGGGTTGATTCCACTGTGTTTTGAAGGTGAAGTCAGGGCCGGAGAC				5q36	PREDICTED: Rattus norvegicus transformation related protein 73 (predicted) (Trp73_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659421-S	ILMN_69882	CRB1_PREDICTED	XM_222675.4	XM_222675.4		304825	109497967	XM_222675.4	Crb1_predicted	XP_222675.4	ILMN_1358883	0006450603	S	3215	TCGCTTCCAACAAGAGGGCGACTCAAGGAACCTACAGCCCCAGTGGTCAG	13	-	52558645-52558694	13q13	PREDICTED: Rattus norvegicus crumbs homolog 1 (Drosophila) (predicted) (Crb1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577614-S	ILMN_266626	OLR657	NM_001000343.1	NM_001000343.1		295863	47577614	NM_001000343.1	Olr657	NP_001000343.1	ILMN_1365889	0003290093	S	243	GGATTCCCTGCTGAAGGAGGCTTCTATCTCTTTCACTGAGTGCATAATCC	3	-	72870829-72870878	3q24	Rattus norvegicus olfactory receptor 657 (Olr657), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr657	Olr657
Rattus norvegicus	RefSeq	GI_62650594-S	ILMN_265986	LOC680293	XR_005694.1	XR_005694.1		680293	109478131	XR_005694.1	LOC680293		ILMN_1353850	0004560239	S	530	GTGGTGCATGGGACAAGCCTTCCTGCTACCTCAAGTGGTTGGGTTCGGCT	6	-	52676984-52677033	6q16	PREDICTED: Rattus norvegicus similar to developmental pluripotency associated 4 isoform 1 (LOC680293), mRNA.					
Rattus norvegicus	RefSeq	GI_62656069-S	ILMN_69703	SEPT8_PREDICTED	XM_220423.4	XM_220423.4		303135	109488098	XM_220423.4	Sept8_predicted	XP_220423.4	ILMN_1360138	0000430195	S	2656	TAGCCAACCCCATCCTCAGCAGCTCATTCGGGGTACAGCTAGAGCCACAC	10	+	39016958-39017007	10q22	PREDICTED: Rattus norvegicus septin 8 (predicted) (Sept8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577238-S	ILMN_298617	OLR731	NM_001000364.1	NM_001000364.1		295919	47577238	NM_001000364.1	Olr731	NP_001000364.1	ILMN_1363533	0006450500	S	258	GGGGAGAGCCATCTCTTTTGAGGGCTGCTTGGCCCAGTTCTTTGTGGCTC	3	-	74500426-74500475	3q24	Rattus norvegicus olfactory receptor 731 (Olr731), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr731	Olr731
Rattus norvegicus	RefSeq	GI_62647804-S	ILMN_61250	DYSF_PREDICTED	XM_232123.3	XM_232123.3		312492	62647804	XM_232123.3	Dysf_predicted	XP_232123.3	ILMN_1354047	0004540215	S	6690	CTGACAGGCTATGAGAGGCAGGTGTTTGCCTTTGTTCGGGGCTTTCTCTG				4q34	PREDICTED: Rattus norvegicus dysferlin (predicted) (Dysf_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34855459-S	ILMN_276955	LGTN_PREDICTED	XM_001076874.1	XM_001076874.1		308432	109461446	XM_001076874.1	Lgtn_predicted	XP_001076874.1	ILMN_1349295	0002970487	S	631	CAAAGACAGTCTGCAGGTGCAGGTCCAGATCCACCACCTCCGCCAGCTAT				1q21	PREDICTED: Rattus norvegicus ligatin (predicted) (Lgtn_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658838-S	ILMN_50817	DDX55_PREDICTED	XM_222149.3	XM_222149.3		304468	62658838	XM_222149.3	Ddx55_predicted	XP_222149.3	ILMN_1372872	0000380133	S	1944	AGAACAGTCCGGCTGACAGAGTCAGGTGTCTCGGACTCAGAAGAGGACAG					PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 (predicted) (Ddx55_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34880506-S	ILMN_70140	F13B_PREDICTED	XM_222693.3	XM_222693.3		289055	109497971	XM_222693.3	F13b_predicted	XP_222693.3	ILMN_1373548	0000510180	S	1701	GCCATTTCCTACAAGGGTCACGGGATGCCTACTGTGTAGATGGAGTGTGG	13	+	52884931-52884980	13q13	PREDICTED: Rattus norvegicus coagulation factor XIII, beta subunit (predicted) (F13b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559942-S	ILMN_287825	FGF7	NM_022182.1	NM_022182.1		29348	11559942	NM_022182.1	Fgf7	NP_071518.1	ILMN_1357408	0003940142	S	557	CCTCTGCATCAGCTAAATGGACACACAGCGGAGGGGAAATGTTCGTGGCC	3	+	113517402-113517451	3q36	Rattus norvegicus fibroblast growth factor 7 (Fgf7), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence IMP]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 8654] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IDA]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence IMP]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IDA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IEA]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence IMP]	Interacting selectively with the type 2 fibroblast growth factor receptor (FGFR2) [goid 5111] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IMP]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]	Kgf	Kgf
Rattus norvegicus	RefSeq	GI_62662408-S	ILMN_268995	RGD1310931_PREDICTED	XM_001066312.1	XM_001066312.1		290642	109503924	XM_001066312.1	RGD1310931_predicted	XP_001066312.1	ILMN_1368674	0005050465	S	629	GCTGCTGAAGAAGGAGTGGTTGCGCTCTCCTGACAACCCGATGAACCAGC				16p14	PREDICTED: Rattus norvegicus similar to hypothetical protein BC013949 (predicted) (RGD1310931_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577584-S	ILMN_295005	OLR663	NM_001000346.1	NM_001000346.1		295869	47577584	NM_001000346.1	Olr663	NP_001000346.1	ILMN_1355136	0000450592	S	407	ATTGGAGGCTCTGTGGTACCCTGATGGGAATAGCATGGACAGGGGGCTTC	3	-	73017550-73017599	3q24	Rattus norvegicus olfactory receptor 663 (Olr663), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr663; ratchr3-72914378-72913443_ORF	Olr663; ratchr3-72914378-72913443_ORF
Rattus norvegicus	RefSeq	GI_13592140-S	ILMN_272741	PSMC5	NM_031149.1	NM_031149.1		81827	13592140	NM_031149.1	Psmc5	NP_112411.1	ILMN_1354016	0002060152	S	905	GGATTGATATCCTGGACTCTGCCCTGCTTCGTCCTGGGAGGATTGACAGG	10	+	95656247-95656296	10q32.1	Rattus norvegicus protease (prosome, macropain) 26S subunit, ATPase 5 (Psmc5), mRNA.	A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core [goid 502] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 30163] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome [goid 43161] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]; Interacting selectively with a receptor for thyrotropin-releasing hormone, a tripeptide hormone that is produced by the hypothalamus and stimulates the release of thyroid-stimulating hormone (TSH) and prolactin by the anterior pituitary [goid 31531] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]	Sug1	Sug1
Rattus norvegicus	RefSeq	GI_62655271-S	ILMN_53665	SERPINE2	XM_343604.3	XM_343604.3		29366	109486275	XM_343604.3	Serpine2	XP_343605.2	ILMN_1370763	0000610400	S	2242	GAAGGCCAGAAGGTGGTGAGGTGGTGAGGGGTGGAGCTAGAAAAGCCGTA	9	-	79091637-79091686	9q34	PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade E, member 2 (Serpine2), mRNA.			Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence TAS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_34576550-S	ILMN_266132	IL18RAP	NM_184047.1	NM_184047.1		373540	34576550	NM_184047.1	Il18rap	NP_908936.1	ILMN_1360705	0004850563	S	228	TGAGAAGGACCTCTCTGACGTCCAGTGGTACATGCAACCTCGGAGTGGCG	9	+	39677154-39677203	9q21	Rattus norvegicus interleukin 18 receptor accessory protein (Il18rap), mRNA.			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with interleukin-18 [goid 42007] [evidence TAS]		
Rattus norvegicus	RefSeq	GI_62651624-S	ILMN_51072	LOC500758	XM_576136.1	XM_576136.1		500758	62651624	XM_576136.1	LOC500758	XP_576136.1	ILMN_1367218	0004280242	S	70	GCCAGAAAGGAGTAGGCAACAGCACATATCCAGAAGGATCCCAGTCTGTG					PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2 variant 1 (LOC500758), mRNA.					
Rattus norvegicus	RefSeq	GI_47577344-S	ILMN_263486	OLR711	NM_001000625.1	NM_001000625.1		404817	47577344	NM_001000625.1	Olr711	NP_001000625.1	ILMN_1372046	0004730170	S	673	ACCTACAGTCAGGAAGGGAGACGCAAAGCCCTGTCTACCTGCAGCTCCCA	3	-	74064433-74064482	3q24	Rattus norvegicus olfactory receptor 711 (Olr711), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr711	Olr711
Rattus norvegicus	RefSeq	GI_56799434-S	ILMN_290561	UFC1	NM_001003709.2	NM_001003709.2		445268	56799434	NM_001003709.2	Ufc1	NP_001003709.1	ILMN_1363236	0002810086	S	895	GATTTGGGCCTTGAAAGAGGCGGTTTGTATCCCTTCTCCAAGCAGAGCCC	13	-	87181729-87181778	13q24	Rattus norvegicus ubiquitin-fold modifier conjugating enzyme 1 (Ufc1), mRNA.		The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC105791	MGC105791
Rattus norvegicus	RefSeq	GI_62653601-S	ILMN_295484	DSCAML1_PREDICTED	XM_001068519.1	XM_001068519.1		315615	109484638	XM_001068519.1	Dscaml1_predicted	XP_001068519.1	ILMN_1360165	0001340008	S	6533	CTTCTCCATGAAGCCAGGGCACAAAACAAGTCAAATCCTCCACCCCACGA				8q22	PREDICTED: Rattus norvegicus Down syndrome cell adhesion molecule-like 1 (predicted) (Dscaml1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27682038-S	ILMN_56129	TBCC_PREDICTED	XM_236922.2	XM_236922.2		316221	109485764	XM_236922.2	Tbcc_predicted	XP_236922.1	ILMN_1368347	0003990079	S	835	CCAGCAGCTCCGCGTACACACTACCAAAGACACCCGCATCTTCTTGCAGG	9	-	9295265-9295314	9q12	PREDICTED: Rattus norvegicus tubulin-specific chaperone c (predicted) (Tbcc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090242-S	ILMN_273815	TOR2A	NM_001007744.1	NM_001007744.1		362112	56090242	NM_001007744.1	Tor2a	NP_001007745.1	ILMN_1366329	0006940347	S	1289	CAGCTGGGGGCTTTTACTGGCACGCCTTGTCTGGTCCCTTCTCCAGATCT	3	+	11737810-11737859	3p11	Rattus norvegicus torsin family 2, member A (Tor2a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]	The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate [goid 17111] [evidence IEA]	MGC93778	MGC93778
Rattus norvegicus	RefSeq	GI_62667060-S	ILMN_64316	TAF1_PREDICTED	XM_228551.4	XM_228551.4		317256	109510925	XM_228551.4	Taf1_predicted	XP_228551.3	ILMN_1352730	0006840333	S	5536	GGAGCCTGATCCCAAGTCGAACACCCAGGATACAAGCTTCAGCAGCATCG	X	+	89664802-89664851	Xq31	PREDICTED: Rattus norvegicus TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) (Taf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576226-S	ILMN_277189	OLR1325	NM_001000473.1	NM_001000473.1		300625	47576226	NM_001000473.1	Olr1325	NP_001000473.1	ILMN_1363736	0002340086	S	276	CTCCTACCCTGAATGCATGACCCAGCTGTACTTTTTCTCTCTTTTTGCAA	8	+	42813218-42813267	8q22	Rattus norvegicus olfactory receptor 1325 (Olr1325), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1325	Olr1325
Rattus norvegicus	RefSeq	GI_62717732-S	ILMN_299489	LOC301879	XR_009224.1	XR_009224.1		301879	109515896	XR_009224.1	LOC301879		ILMN_1363650	0006290440	S	424	CCGAAGGCAGACGAAGACCGCAAGAAGCTATAGGATGACCAGACTGAGGC					PREDICTED: Rattus norvegicus similar to ribosomal protein L19 (LOC301879), mRNA.					
Rattus norvegicus	RefSeq	GI_62642844-S	ILMN_63899	LOC499519	XM_579973.1	XM_579973.1		499519	62642844	XM_579973.1	LOC499519	XP_579973.1	ILMN_1355421	0002060403	S	38	AGCGGAGTATCGAAGGTTGAGAAGCAAGGGACTGGCAGCTGGGAACACGC					PREDICTED: Rattus norvegicus LOC499519 (LOC499519), mRNA.					
Rattus norvegicus	RefSeq	GI_62650059-S	ILMN_268308	CAR6	XM_001075425.1	XM_001075425.1		298657	109477731	XM_001075425.1	Car6	XP_001075425.1	ILMN_1372497	0003840193	S	1061	TCTGACTAACCCAGAGGGAGTTCTCATCCCTGAGAGGAAGTGGAGCTGCG				5q36	PREDICTED: Rattus norvegicus carbonic anhydrase 6 (Car6), mRNA.		The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_6978856-S	ILMN_265817	FST	NM_012561.1	NM_012561.1		24373	6978856	NM_012561.1	Fst	NP_036693.1	ILMN_1353747	0002340390	S	823	CCGGACAGTAAGTCGGATGAGCCCGTCTGTGCCAGCGACAATGCCACGTA	2	-	46543261-46543310	2q14	Rattus norvegicus follistatin (Fst), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence IEA]; The generation and maintenance of gametes. A gamete is a haploid reproductive cell [goid 7276] [evidence ISS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence IEA]; The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure [goid 8585] [evidence ISS]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence IEA]; A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor [goid 30509] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence IEA]; The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin [goid 43616] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone [goid 46882] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit [goid 43395] [evidence IDA]; Interacting selectively with activin, a dimer of inhibin-beta subunits [goid 48185] [evidence TAS]	RATFOL1; Fst-288; FOL1	RATFOL1; Fst-288; FOL1
Rattus norvegicus	RefSeq	GI_62661986-S	ILMN_298653	MED4	NM_001024256.1	NM_001024256.1		306030	66730396	NM_001024256.1	Med4	NP_001019427.1	ILMN_1357358	0006040458	S	517	CCAGGAGACCCTCGACGGCCATACCCAACTGATTTAGAGATGAGAAGTGG	15	+	54165786-54165789:54167300-54167345	15p11	Rattus norvegicus mediator complex subunit 4 (Med4), mRNA.	A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence IEA]; A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription [goid 119] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence IEA]; Any series of molecular signals generated as a consequence of an androgen binding to its receptor [goid 30521] [evidence ISS]	The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence IEA]; The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself [goid 3712] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence IEA]; Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex [goid 16455] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence ISS]	Vdrip	Vdrip
Rattus norvegicus	RefSeq	GI_16758171-S	ILMN_286982	QSCN6	NM_053431.1	NM_053431.1		84491	16758171	NM_053431.1	Qscn6	NP_445883.1	ILMN_1360522	0003450746	S	2161	GTGGGTGATGCTGGGGTCTGGAGTGCCTTAGTCCTGAGCTACCTGTGAGA	13	-	70740025-70740074	13q21	Rattus norvegicus quiescin Q6 (Qscn6), mRNA.				rSOx	rSOx
Rattus norvegicus	RefSeq	GI_62661538-S	ILMN_48226	LOC498521	XM_573790.1	XM_573790.1		498521	62661538	XM_573790.1	LOC498521	XP_573790.1	ILMN_1353853	0004730148	S	523	CCCGTCCGGGAACACATGACTAAAACACCCCATGGAGAGGACCGTGACAC					PREDICTED: Rattus norvegicus similar to hypothetical protein PB403022.00.0 (LOC498521), mRNA.					
Rattus norvegicus	RefSeq	Rn.103733	ILMN_298207	NICN1	NM_001034999.1	NM_001034999.1		619581	78042612	NM_001034999.1	Nicn1	NP_001030171.1	ILMN_1530520	0001940300	S	1147	TTTTGCTAATAGCCTTTGTCATTTCATCTTAGCGTTTTGTGAGTTCAAGA					Rattus norvegicus nicolin 1 (Nicn1), mRNA.					
Rattus norvegicus	RefSeq	GI_19705546-S	ILMN_285103	BTBD14B	NM_134413.1	NM_134413.1		171454	19705546	NM_134413.1	Btbd14b	NP_599240.1	ILMN_1371727	0002340039	S	1907	CTTGGTAGGCATAGAATACAGCTTCCACACAGACAGCCCCCTCAGCAGAG	19	+	25148527-25148576	19q11	Rattus norvegicus BTB (POZ) domain containing 14B (Btbd14b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Nac1; Nac-1	Nac1; Nac-1
Rattus norvegicus	RefSeq	GI_8393109-S	ILMN_289345	CHM	NM_017067.1	NM_017067.1		24942	8393109	NM_017067.1	Chm	NP_058763.1	ILMN_2039780	0004490433	S	3352	TGGGAAAATCCAAGGAATGTGCTGACCCCTGCAGATTGAGATGGACTGAG	X	-	101753937-101753986	Xq32	Rattus norvegicus choroideremia (Rab escort protein 1) (Chm), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A heterodimeric enzyme complex, which in mammals is composed of an alpha and a beta subunit, and which associates with an accessory protein Rep (Rab escort protein). Catalyzes of the transfer of a geranyl-geranyl moiety from geranylgeranyl pyrophosphate to a Rab protein [goid 5968] [evidence IEA]	The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IEA]	Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family [goid 4663] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62648307-S	ILMN_62405	LOC500358	XM_575713.1	XM_575713.1		500358	62648307	XM_575713.1	LOC500358	XP_575713.1	ILMN_1357656	0004780156	S	10	TATCAGAGTTTGAAATAAAGACAATCAAAGTGCTGAATAATAGTAATAAG					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC500358), mRNA.					
Rattus norvegicus	RefSeq	GI_47577078-S	ILMN_299741	OLR770	NM_001000372.1	NM_001000372.1		296023	47577078	NM_001000372.1	Olr770	NP_001000372.1	ILMN_1374888	0001660528	S	660	TATCCTTGTCACTGTTCACAGGAGCGCTAAAGCTGGAGCATCTAAGGCCC	3	+	97220718-97220767	3q34	Rattus norvegicus olfactory receptor 770 (Olr770), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr770	Olr770
Rattus norvegicus	RefSeq	GI_62654318-S	ILMN_51167	LOC497834	XM_579503.1	XM_579503.1		497834	62654318	XM_579503.1	LOC497834	XP_579503.1	ILMN_1351065	0002570154	S	2223	GTCCTGCAGCTCGCCAACCTGCCAGATCTGTACAAAGTCTTTGAGCGGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031053 (LOC497834), mRNA.					
Rattus norvegicus	RefSeq	GI_56606071-S	ILMN_301490	DHRS7B	NM_001008507.1	NM_001008507.1		287380	56606071	NM_001008507.1	Dhrs7b	NP_001008507.1	ILMN_1373793	0005050286	S	1073	CACAGCTGAGACCTGGTGGAGGGCTGTCTTCTGTTTGTTCCCCAGGGAGT	10	+	47003812-47003861	10q22	Rattus norvegicus dehydrogenase/reductase (SDR family) member 7B (Dhrs7b), mRNA.	A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC105547; RGD1311243	MGC105547; RGD1311243
Rattus norvegicus	RefSeq	GI_62652339-I	ILMN_64371	ATP6V1C1_PREDICTED	XM_576255.1	XM_576255.1		299971	62652339	XM_576255.1	Atp6v1c1_predicted	XP_576255.1	ILMN_1375808	0003450279	S	18	CGGAGAGGCCGGAGCTTAGGTCCGGGAGGGATGGAGCGCTGAGCGGTTAA				7q22	PREDICTED: Rattus norvegicus ATPase, H+ transporting, V1 subunit C, isoform 1 (predicted) (Atp6v1c1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649488-S	ILMN_296381	RGD1562911_PREDICTED	XM_001072060.1	XM_001072060.1		500534	109477086	XM_001072060.1	RGD1562911_predicted	XP_001072060.1	ILMN_1351474	0003520332	S	1109	GAGACAGCTTCCACATCAGTTTCCAGTGCAGCATCCCAGGCACCGACCTG				5q36	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC45441 (predicted) (RGD1562911_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_42627878-S	ILMN_293162	RPL17	NM_201415.1	NM_201415.1		291434	42627878	NM_201415.1	Rpl17	NP_958818.1	ILMN_1370001	0002120494	S	206	ATTCCGGCGGTATAACGGTGGAGTTGGTAGGTGCGCCCAGGCCAAACAGT	18	+	71864490-71864529:71864753-71864762	18q12.3	Rattus norvegicus ribosomal protein L17 (Rpl17), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence TAS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence TAS]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]	rpL23; MGC112577; ASI	rpL23; MGC112577; ASI
Rattus norvegicus	RefSeq	GI_62657445-S	ILMN_276572	DDC8	NM_001017481.1	NM_001017481.1		498028	62945317	NM_001017481.1	Ddc8	NP_001017481.1	ILMN_1353997	0005390309	S	1465	CCATTACAAGGCTGAGCTGGAGGAAGAACGCAGGGAGCGTAGACGGATGC	10	-	108336607-108336656	10q32.3	Rattus norvegicus differential display clone 8 (Ddc8), mRNA.					
Rattus norvegicus	RefSeq	GI_62663655-S	ILMN_61285	KIF5B	XM_341538.2	XM_341538.2		117550	62663655	XM_341538.2	Kif5b	XP_341539.2	ILMN_1354288	0002060162	S	3765	AGTCCCTCAAGTGGGATACACAACTTTAATCCCAAGCAGAGGCAGATGGG				17q12.1	PREDICTED: Rattus norvegicus kinesin family member 5B (Kif5b), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]; A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm [goid 35253] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 7028] [evidence IEA]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence IDA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with microtubules, filaments composed of tubulin monomers [goid 8017] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62656496-S	ILMN_52812	LOC497945	XM_579760.1	XM_579760.1		497945	62656496	XM_579760.1	LOC497945	XP_579760.1	ILMN_1350016	0001580605	S	535	ACAGATCGGACAGCCGGCAGAACACGGGAGACGAGAGACCTACAGCTTCT					PREDICTED: Rattus norvegicus LOC497945 (LOC497945), mRNA.					
Rattus norvegicus	RefSeq	GI_62657469-S	ILMN_66890	RGD1306356	XM_221195.4	XM_221195.4		303740	109489465	XM_221195.4	RGD1306356	XP_221195.3	ILMN_1352610	0001990519	S	3262	GCCCAAACTAGCTGTGCCTGGGGATCAGAAGCCTGAGAATGCCAAACCTA	10	-	109517353-109517402	10q32.3	PREDICTED: Rattus norvegicus similar to hypothetical protein MGC15523 (RGD1306356), mRNA.					
Rattus norvegicus	RefSeq	GI_27545363-S	ILMN_284476	OLR59	NM_173293.1	NM_173293.1		170816	27545363	NM_173293.1	Olr59	NP_775415.1	ILMN_1372759	0006290333	S	2642	GAGTGATTTCCCCCAGTCCTCTTTACCAACAGTGCAAAGGGCCTGCCAGG	1	+	160613581-160613630	1q32	Rattus norvegicus olfactory receptor 59 (Olr59), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	RA1c; Olfr78	RA1c; Olfr78
Rattus norvegicus	RefSeq	GI_62655465-S	ILMN_275898	MTERFD2	NM_001037209.1	NM_001037209.1		363289	81295356	NM_001037209.1	Mterfd2	NP_001032286.1	ILMN_1361195	0000520253	S	775	AGCCAAGGTCAAGCAGAGACACATTTACTTGGAGCGCCTTGGACGGTACC	9	-	92572542-92572591	9q36	Rattus norvegicus MTERF domain containing 2 (Mterfd2), mRNA.				MGC112635	MGC112635
Rattus norvegicus	RefSeq	GI_62655677-S	ILMN_273808	BOLL_PREDICTED	XM_001076609.1	XM_001076609.1		302920	109489591	XM_001076609.1	Boll_predicted	XP_001076609.1	ILMN_1355529	0004050600	S	1540	CCAATGTGGGGAGAGAGGAAGCTTTCCGAGGCCCGAGTGTTGCGACACAT				10q12	PREDICTED: Rattus norvegicus bol, boule-like (Drosophila) (predicted) (Boll_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645554-S	ILMN_64615	LOC296512	XM_231006.3	XM_231006.3		296512	62645554	XM_231006.3	LOC296512	XP_231006.3	ILMN_1367850	0005290279	S	8277	TCCCACTGCTAGTCTGAAAGAACGACTGCGTCAGAAGGAAGCCAGCGTGG				3q34	PREDICTED: Rattus norvegicus similar to formin (predicted) (LOC296512), mRNA.					
Rattus norvegicus	RefSeq	GI_62665333-S	ILMN_66639	LOC361418	XM_341696.2	XM_341696.2		361418	62665333	XM_341696.2	LOC361418	XP_341697.1	ILMN_1368704	0002190082	S	2792	GTCCCCTCAGCAGGACTCAGCTAGAACTTGATCTTGTGCAGACTCAGAGG				19q12	PREDICTED: Rattus norvegicus similar to steroid dehydrogenase-like (predicted) (LOC361418), mRNA.					
Rattus norvegicus	RefSeq	GI_62649722-S	ILMN_274107	RGD1311622_PREDICTED	XM_001061389.1	XM_001061389.1		297890	109477309	XM_001061389.1	RGD1311622_predicted	XP_001061389.1	ILMN_1368578	0004480725	S	671	CCTGGCTGGGAGGAGGAAGAAGAGGAGCTTGAACGCATTGTACCATCTCC				5q36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110063F24 (predicted), transcript variant 3 (RGD1311622_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658552-S	ILMN_280662	MGC112692	NM_001025759.1	NM_001025759.1		498157	71043785	NM_001025759.1	MGC112692	NP_001020930.1	ILMN_1354259	0000380020	S	1121	TCAGCCCGGGTTCCTGATGAAGAGAACACAACCGGAACAGCGAGAGGGAG	12	-	16635249-16635298	12q11	Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (CD43) (W3/13 antigen) (MGC112692), mRNA.					
Rattus norvegicus	Unigene	Rn.18519	ILMN_160798	LOC500237	Rn.18519		Rn.18519		62647718	XM_575587	LOC500237		ILMN_1530433	0005050193	S	2001	TTCACTGACAGGCTCATCCAGGATTCTAAGTACTTCTTGATATTTTCAAA					PREDICTED: Rattus norvegicus similar to Camello-like 2 (LOC500237),					
Rattus norvegicus	RefSeq	GI_47577408-S	ILMN_298449	OLR453	NM_001000289.1	NM_001000289.1		295723	47577408	NM_001000289.1	Olr453	NP_001000289.1	ILMN_1349134	0001740181	S	885	AGAGGTGAAAGCGGCCATGGGCAGGACAGTAGCCAAGGCCAAAGTTTTCC	3	+	68934343-68934392	3q24	Rattus norvegicus olfactory receptor 453 (Olr453), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-68829831-68830775_ORF; Olr453	ratchr3-68829831-68830775_ORF; Olr453
Rattus norvegicus	RefSeq	GI_62665918-S	ILMN_49552	ARID5B_PREDICTED	XM_228114.4	XM_228114.4		309728	109509383	XM_228114.4	Arid5b_predicted	XP_228114.3	ILMN_1353523	0006650091	S	3413	CATCGCCAACAAATTCTCAGCAGCTGTACAGACACTTGGCCGCAGCCACC	20	+	21306387-21306436	20p11	PREDICTED: Rattus norvegicus AT rich interactive domain 5B (Mrf1 like) (predicted) (Arid5b_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662455-I	ILMN_273838	LOC684448	XM_001069189.1	XM_001069189.1		684448	109503979	XM_001069189.1	LOC684448	XP_001069189.1	ILMN_1375793	0000870408	S	821	AACCATACCTTCGGGACCCTGTGGCCTACCCAAAGTTGCAGATGCTGATG					PREDICTED: Rattus norvegicus similar to transmembrane 6 superfamily member 2 (LOC684448), mRNA.					
Rattus norvegicus	RefSeq	GI_62664520-S	ILMN_62263	NAPG	XM_225881.4	XM_225881.4		307382	109506700	XM_225881.4	Napg	XP_225881.4	ILMN_1369424	0000870047	S	1233	GCAGAGAGGTGTGTCCGGGAGAGCTACAGCATACCAGGGTTTAACGGCAG	18	+	59132426-59132454:59133068-59133088	18q12.1	PREDICTED: Rattus norvegicus N-ethylmaleimide-sensitive factor attachment protein, gamma (Napg), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645244-S	ILMN_271748	SP3	NM_001029905.1	NM_001029905.1		367846	71361666	NM_001029905.1	Sp3	NP_001025076.1	ILMN_1372992	0005050647	S	2295	CCGTTGGCATTCTGGGGAGCGCCCTTTTATTTGTAACTGGATGTTCTGTG	3	-	55442957-55442957:55445176-55445224	3q22	Rattus norvegicus Sp3 transcription factor (Sp3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a natural killer cell [goid 1779] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a trophectoderm cell [goid 1829] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin [goid 1892] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex [goid 30217] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of a megakaryocyte [goid 30219] [evidence ISS]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte [goid 30224] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process by which a myeloid precursor cell acquires the specialized features of a granulocyte. Granulocytes are a class of leukocytes characterized by the presence of granules in their cytoplasm. These cells are active in allergic immune reactions such as arthritic inflammation and rashes. This class includes basophils, eosinophils and neutrophils [goid 30851] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized during embryonic development. Morphogenesis pertains to the creation of form [goid 48596] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother [goid 60136] [evidence ISS]; A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood [goid 60216] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657483-S	ILMN_67603	RGD1561880_PREDICTED	XM_573231.2	XM_573231.2		498030	109489473	XM_573231.2	RGD1561880_predicted	XP_573231.2	ILMN_1357063	0000610301	S	629	GCTTTCTGTTTGGCTGAGACGAGGTGGAAACGAGGACTGGAGCTTTGCTG	10	+	109996896-109996945	10q32.3	PREDICTED: Rattus norvegicus similar to anaphase promoting complex subunit 11 homolog (predicted) (RGD1561880_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646927-S	ILMN_65148	LOC500056	XM_575411.1	XM_575411.1		500056	62646927	XM_575411.1	LOC500056	XP_575411.1	ILMN_1356246	0006040711	S	486	GGTTGGAACTGCAAAATATCATCCTGAGTGAGCTCAGTAGTACAACTTGA					PREDICTED: Rattus norvegicus similar to Ac1262 (LOC500056), mRNA.					
Rattus norvegicus	RefSeq	GI_62718281-S	ILMN_285473	LOC690054	XM_001073060.1	XM_001073060.1		690054	109513455	XM_001073060.1	LOC690054	XP_001073060.1	ILMN_1360253	0003130242	S	1092	CACAGATTCAGGCATCAGAGTGTTATTAAGCCAACCTGCGGCTCTGGGGT	Un|NW_047883.1	-	228182-228231		PREDICTED: Rattus norvegicus hypothetical protein LOC690054 (LOC690054), mRNA.					
Rattus norvegicus	RefSeq	GI_62665820-S	ILMN_287229	SUMO3	NM_001024295.1	NM_001024295.1		499417	66730334	NM_001024295.1	Sumo3	NP_001019466.1	ILMN_1368764	0000840750	S	1252	GTGCAGTTTTCCAAGTGTGTGTTAACGGGACGCCTCGGTGGGTGACTGCG	20	-	11394224-11394273	20p12	Rattus norvegicus SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) (Sumo3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein [goid 16925] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal glycine residues of the small ubiquitin-related modifier SUMO and a substrate lysine residue, leading to the formation of predominately monosumoylated proteins with modified function [goid 19789] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653880-S	ILMN_52033	RGD1311456_PREDICTED	XM_343420.3	XM_343420.3		363089	109483601	XM_343420.3	RGD1311456_predicted	XP_343421.2	ILMN_1354049	0002680504	S	2363	GGAGTTTAATACTGGGGAGGGGCAGCAGGAATAATGACCCTTCATTGTGC	8	-	75078611-75078660	8q24	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230380D07 (predicted) (RGD1311456_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663863-S	ILMN_50392	LOC291244	XM_225493.3	XM_225493.3		291244	62663863	XM_225493.3	LOC291244	XP_225493.3	ILMN_1366720	0003190341	S	659	CGCAAGTGGAAAACCAAGAGGACCCAGTGCGGTGACAGCTTGGCGAGCCA					PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S7 (S8) (LOC291244), mRNA.					
Rattus norvegicus	RefSeq	GI_34860805-S	ILMN_279254	RAP1GDS1_PREDICTED	XM_001078472.1	XM_001078472.1		310909	109467722	XM_001078472.1	Rap1gds1_predicted	XP_001078472.1	ILMN_1356569	0007050711	S	1710	GGCTCTCGTCGCGTTGGCACTAATTGCAGCTTTGGAATTGGGTCCTGCGG				2q44	PREDICTED: Rattus norvegicus RAP1, GTP-GDP dissociation stimulator 1 (predicted) (Rap1gds1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645113-I	ILMN_65144	STAM2_PREDICTED	XM_575133.1	XM_575133.1		311030	62645113	XM_575133.1	Stam2_predicted	XP_575133.1	ILMN_1375885	0006900102	S	193	AGGGGCTGTCGCGTCCTTGGAACAGCAGTGAGGCCATTACAGGGTGCTAG				3q12	PREDICTED: Rattus norvegicus signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (predicted) (Stam2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640931-S	ILMN_281804	KCTD14_PREDICTED	XM_001064247.1	XM_001064247.1		308836	109462453	XM_001064247.1	Kctd14_predicted	XP_001064247.1	ILMN_1370108	0000110037	S	748	GGCCCTGTGACGGAGGACTTTGTGTACTGCCTGGAGAAGGACATTAGAGC				1q32	PREDICTED: Rattus norvegicus potassium channel tetramerisation domain containing 14 (predicted) (Kctd14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13592030-S	ILMN_288690	PTGER2	NM_031088.1	NM_031088.1		81752	13592030	NM_031088.1	Ptger2	NP_112350.1	ILMN_1361292	0001940072	S	1158	GGCCTCGTTGGAGGAACGTAAAGGGCCGGAATGTAAACAAATGGCCTTGC	15	+	20216677-20216726	15p14	Rattus norvegicus prostaglandin E receptor 2, subtype EP2 (Ptger2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence NAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IDA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]; Combining with a thromboxane (TXA) to initiate a change in cell activity [goid 4960] [evidence IEA]	Ptger-ep2	Ptger-ep2
Rattus norvegicus	RefSeq	GI_27712069-S	ILMN_274640	RGD1565602_PREDICTED	XM_001062340.1	XM_001062340.1		304809	109498655	XM_001062340.1	RGD1565602_predicted	XP_001062340.1	ILMN_2040496	0005720592	S	1176	CTTCTGCCTGCTTCCCCCTCTCCATGATGTTCCCAAGGGAGACTGGAGGT				13q13	PREDICTED: Rattus norvegicus similar to PLU1 (predicted), transcript variant 2 (RGD1565602_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658885-S	ILMN_295980	RGD1566266_PREDICTED	XR_009299.1	XR_009299.1		304486	109497397	XR_009299.1	RGD1566266_predicted		ILMN_1362005	0005570059	S	1453	TTTGGGAACTCACGAGCCCAGGATGTGCAGGACTGGGTGCCTGTGCACTT				12q16	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ21127 (predicted) (RGD1566266_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657301-S	ILMN_267729	RGD1559936_PREDICTED	XR_009479.1	XR_009479.1		303659	109492179	XR_009479.1	RGD1559936_predicted		ILMN_1364900	0004070408	S	2703	AAAAAGGGAGGAGTCACTGGAGGCCAAGAGGAGGAAGCGGAGGTCTCGGT				10q32.2	PREDICTED: Rattus norvegicus similar to Flj37300-A-prov protein (predicted) (RGD1559936_predicted), mRNA.					
Rattus norvegicus	Unigene	Rn.112691	ILMN_160958	RN.112691	Rn.112691		Rn.112691		8501074	BE108969			ILMN_1530552	0002970239	S	77	AATGAATGAAAAGACATTATAGCCAACAAGCAGGTCTCTAAATCTATCCA					UI-R-BS1-aza-e-04-0-UI.s1 UI-R-BS1 Rattus norvegicus cDNA clone UI-R-BS1-aza-e-04-0-UI 3', mRNA					
Rattus norvegicus	RefSeq	GI_62654418-S	ILMN_55942	RGD1561652_PREDICTED	XM_243980.4	XM_243980.4		316039	109484026	XM_243980.4	RGD1561652_predicted	XP_243980.4	ILMN_1361784	0004210072	S	2294	GTACTTCATCCCGGAGGGCGATGGCTGGGTGTACTTCAACCCCCTTTGGA	8	+	119667974-119667989:119670034-119670067	8q32	PREDICTED: Rattus norvegicus similar to oxysterol-binding protein-like protein 10 (predicted) (RGD1561652_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654478-S	ILMN_58944	SLC22A14_PREDICTED	XM_236684.4	XM_236684.4		316061	109484088	XM_236684.4	Slc22a14_predicted	XP_236684.4	ILMN_1359517	0002120619	S	976	GAGACTGCTGTTCCTACTGGGCGGAGTGCCTATGTTTCCCCTTATCTGCA	8	-	124142467-124142516	8q32	PREDICTED: Rattus norvegicus solute carrier family 22 (organic cation transporter), member 14 (predicted) (Slc22a14_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659325-S	ILMN_272863	ETNK2_PREDICTED	XM_001060940.1	XM_001060940.1		360843	109498634	XM_001060940.1	Etnk2_predicted	XP_001060940.1	ILMN_1363054	0003850440	S	1149	CTGCGTCCCCCAGGGAGGTGGAGCGGCTTTACGCACAAGTCAACAAATTT				13q13	PREDICTED: Rattus norvegicus ethanolamine kinase 2 (predicted) (Etnk2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644983-S	ILMN_266278	METTL11A	NM_001025019.1	NM_001025019.1		362103	68163474	NM_001025019.1	Mettl11a	NP_001020190.1	ILMN_1358855	0000110170	S	678	CAGGAGGGTGTGATCCTGGACGATGTGGACAGCAGTGTGTGCCGTGACCT	3	+	9876533-9876582	3p12	Rattus norvegicus methyltransferase like 11A (Mettl11a), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC109213	MGC109213
Rattus norvegicus	RefSeq	GI_13242307-S	ILMN_268295	ABCA2	NM_024396.1	NM_024396.1		79248	13242307	NM_024396.1	Abca2	NP_077372.1	ILMN_1350564	0001340390	S	7837	CCTCAGCCCTGGTGGAATGGCAGGAACGGAGAAGCTGGGCTTGCTGGCTA	3	+	3615137-3615186	3p13	Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 2 (Abca2), mRNA.	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence ISS]; A region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow [goid 5815] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IDA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence NAS]; Any process that modulates the frequency, rate or extent of the directed movement of cholesterol within cells [goid 32383] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]	Abc2	Abc2
Rattus norvegicus	RefSeq	GI_62657005-A	ILMN_283005	KLHL10	NM_001001510.1	NM_001001510.1		303533	48040498	NM_001001510.1	Klhl10	NP_001001510.1	ILMN_1376517	0007000452	S	1839	GTTGGGGAGTATGCAGCTAGACGGGACAACTTCACGGGATTAGCACTGCG	10	+	89401441-89401490	10q32.1	Rattus norvegicus kelch-like 10 (Drosophila) (Klhl10), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence ISS]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence ISS]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; The process by which the anatomical structures of male genitalia are generated and organized. Morphogenesis pertains to the creation of form [goid 48808] [evidence ISS]; Any biological process involved in the maintenance of the equilibrium of cell number within a population of cells in a tissue [goid 48873] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94527	MGC94527
Rattus norvegicus	RefSeq	GI_62644139-S	ILMN_61063	RHOC_PREDICTED	XM_215659.4	XM_215659.4		295342	109465387	XM_215659.4	Rhoc_predicted	XP_215659.1	ILMN_1374391	0004010735	S	1130	GGCTCACAGGAGGAGTCTAGGATAGGGACTGGGGTTTCTGCTTTGGGTAG	2	+	200053991-200054040	2q34	PREDICTED: Rattus norvegicus ras homolog gene family, member C (predicted) (Rhoc_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638626-S	ILMN_295401	RGD1564000_PREDICTED	XM_577705.1	XM_577705.1		502246	62638626	XM_577705.1	RGD1564000_predicted	XP_577705.1	ILMN_1371169	0000070242	S	1343	TCAAAGAAGACAACCCACTCTCCCACAGAACCCCATTAGAGGATAGGCCC	1	+	50480041-50480090	1q12	PREDICTED: Rattus norvegicus similar to putative protein kinase (predicted) (RGD1564000_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648429-S	ILMN_68122	LOC502911	XM_578413.1	XM_578413.1		502911	62648429	XM_578413.1	LOC502911	XP_578413.1	ILMN_1371754	0005130079	S	328	GTGGCTACCTCACCCTGAATGAGAGATGCAATGAGACCCACGGCAAGTGT				4q43	PREDICTED: Rattus norvegicus similar to ribosomal protein S17 (LOC502911), mRNA.					
Rattus norvegicus	RefSeq	GI_62644167-S	ILMN_62572	EPS8L3_PREDICTED	XM_215677.4	XM_215677.4		295361	109465358	XM_215677.4	Eps8l3_predicted	XP_215677.4	ILMN_1371685	0002650647	S	1999	GAACAGACACTGAGGCAAATGGTACCCTCATTGGGTTGGAGCCCCTGTCC	2	+	203451962-203452011	2q34	PREDICTED: Rattus norvegicus EPS8-like 3 (predicted) (Eps8l3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660764-S	ILMN_54120	AEBP1_PREDICTED	XM_223583.4	XM_223583.4		305494	109500000	XM_223583.4	Aebp1_predicted	XP_223583.4	ILMN_1361533	0003710446	S	3412	AATTCTACCCACTACCGCTGCGGGCTGGGAGGAGTCAGAGACTGAGACCT	14	+	86535242-86535291	14q21	PREDICTED: Rattus norvegicus AE binding protein 1 (predicted) (Aebp1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758549-S	ILMN_282161	BCL2L10	NM_053733.1	NM_053733.1		114552	16758549	NM_053733.1	Bcl2l10	NP_446185.1	ILMN_1374253	0004070494	S	894	GGGTCCTAAACCCCAGAGCCCAGAGCCCGGAGCAATGAAGAATGCAATAG	8	+	80178671-80178720	8q24	Rattus norvegicus BCL2-like 10 (apoptosis facilitator) (Bcl2l10), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence NAS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	Unigene	Rn.14855	ILMN_161193	RN.14855	Rn.14855		Rn.14855		3021046	AA894167			ILMN_1530225	0006620494	S	9	ATGCTTTAATGCCTTAAGAATTTGGCCTCAGATAAGACAGAGCTTCAAAT					EST197970 Normalized rat spleen, Bento Soares Rattus sp. cDNA clone RSPAR87 3' end, mRNA					
Rattus norvegicus	RefSeq	GI_62656143	ILMN_50547	GUK1_PREDICTED	XM_220511.3	XM_220511.3		303179	62656143	XM_220511.3	Guk1_predicted	XP_220511.3	ILMN_1650807	0002810471	S	706	AGGCACTGTCTGAGGTAGGCCCATTCCCACCTGCCCTGTGTGGGGAAGTC				10q22	PREDICTED: Rattus norvegicus guanylate kinase 1 (predicted) (Guk1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_16758345-S	ILMN_263077	VEGP2	NM_053574.1	NM_053574.1		94106	16758345	NM_053574.1	Vegp2	NP_446026.1	ILMN_1359057	0005860181	S	601	TGTTCCAGCTTTTCCACACGGCATTGCTGCACTCTACACAGACCCACTGG	3	-	4862746-4862795	3p13	Rattus norvegicus von Ebners gland protein 2 (Vegp2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653677-S	ILMN_290345	RGD1311251	NM_001024265.1	NM_001024265.1		315665	66730373	NM_001024265.1	RGD1311251	NP_001019436.1	ILMN_1368358	0001090059	S	851	CGAAGATGGCGGAGTGGACTCTGTGATGGAATGGGAAGTCGATGAGGTGC	8	+	56881146-56881195	8q24	Rattus norvegicus similar to RIKEN cDNA 4930550C14 (RGD1311251), mRNA.				MGC108787	MGC108787
Rattus norvegicus	RefSeq	GI_29789033-S	ILMN_300031	CD80	NM_012926.1	NM_012926.1		25408	29789033	NM_012926.1	Cd80	NP_037058.1	ILMN_1353891	0003360193	S	689	GCTCACGTGTCACAGAACTTCACCTGGGTAAAACCCCCAGAAGACCCTCC	11	-	64047664-64047680:64051030-64051062	11q21	Rattus norvegicus Cd80 molecule (Cd80), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation [goid 31295] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation [goid 46641] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine [goid 50731] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	B7-1	B7-1
Rattus norvegicus	RefSeq	GI_62642039-S	ILMN_264067	RGD1564433_PREDICTED	XR_009251.1	XR_009251.1		293971	109463699	XR_009251.1	RGD1564433_predicted		ILMN_1354489	0005050400	S	379	CCATGGATAAGGCTGGGGCCAAAAGGGTCATCATCTCCACCCCTTCAGCC				1q51	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1564433_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_58865499-A	ILMN_291174	STOM	NM_001011965.1	NM_001011965.1		296655	58865499	NM_001011965.1	Stom	NP_001011965.1	ILMN_1376772	0001940358	S	1508	AGGCTCACGCTGGCCCTTCCAAGACCGAAGGTCACTCCTGTCATAGTCCT	3	-	14393184-14393233	3p11	Rattus norvegicus stomatin (Stom), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62657034-S	ILMN_61627	LOC497996	XM_573193.1	XM_573193.1		497996	62657034	XM_573193.1	LOC497996	XP_573193.1	ILMN_1355023	0006040273	S	34	CTTACGAACAATATCATGGAGCATATTTGGGGGATGAGTATGGGCTGCAG					PREDICTED: Rattus norvegicus similar to keratin associated protein 2-4 (LOC497996), mRNA.					
Rattus norvegicus	RefSeq	GI_62662503	ILMN_276180	NPY1R	NM_001013032.1	NM_001013032.1		29358	61556743	NM_001013032.1	Npy1r	NP_001013050.1	ILMN_1650448	0004760706	S	549	TACCTGTGCTCCCAGGGAATGGATTGAGGCAGGTTTGGAAAGTCCAGGAC	16	-	24748359-24748408	16p14	Rattus norvegicus neuropeptide Y receptor Y1 (Npy1r), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence IEA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IMP]; Any process that decreases the concentration of calcium ions in the cytodol [goid 51481] [evidence IMP]	Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IEA]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence ISS]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IEA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	NPY-1; MGC109393	NPY-1; MGC109393
Rattus norvegicus	RefSeq	GI_62647096-S	ILMN_267976	RGD1563986_PREDICTED	XM_001067810.1	XM_001067810.1		312270	109473326	XM_001067810.1	RGD1563986_predicted	XP_001067810.1	ILMN_1351224	0000130451	S	1854	TCTGGTAGCCTTAGAGAGGGCCAGCTCCTCCCAGTACCCATGCTCAAGTG				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA E330009J07 gene (predicted) (RGD1563986_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647247-S	ILMN_57756	LOC500123	XM_575475.1	XM_575475.1		500123	62647247	XM_575475.1	LOC500123	XP_575475.1	ILMN_1367468	0001050706	S	443	GGAGGCGCCTGTGTTCTGATGGCTTAAAGCCACTTCAGAGGGTCCTGGAC				4q24	PREDICTED: Rattus norvegicus similar to ribosomal protein L27a (LOC500123), mRNA.					
Rattus norvegicus	RefSeq	GI_56605673-S	ILMN_292452	CDKN2AIPNL	NM_001008278.1	NM_001008278.1		287278	56605673	NM_001008278.1	Cdkn2aipnl	NP_001008279.1	ILMN_1357560	0001940131	S	1561	GACAGACTGCTTGTCACAGAGGGTAGTGGCAAGGTGGTGGCTGTTGGAGG	10	+	37501235-37501284	10q22	Rattus norvegicus CDKN2A interacting protein N-terminal like (Cdkn2aipnl), mRNA.				MGC105666	MGC105666
Rattus norvegicus	RefSeq	GI_62661191-S	ILMN_65882	LOC498474	XM_573731.2	XM_573731.2		498474	109501431	XM_573731.2	LOC498474	XP_573731.1	ILMN_1366530	0006110097	S	953	GGGCTGCATTTGAAAGACCTTGAGATGTGGCATGGAACACGCCTCACGTT	15	-	20015145-20015194	15p14	PREDICTED: Rattus norvegicus similar to Spetex-2F protein (LOC498474), mRNA.		The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576558-S	ILMN_288114	OLR1643	NM_001000535.1	NM_001000535.1		364306	47576558	NM_001000535.1	Olr1643	NP_001000535.1	ILMN_1355436	0003170494	S	676	CGAAAACAGTCAGCAGAAGGTCGTCGGAAAGCCCTGTCCACCTGCTCAGC	15	+	27929615-27929664	15p14	Rattus norvegicus olfactory receptor 1643 (Olr1643), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1643	Olr1643
Rattus norvegicus	RefSeq	GI_62717828-S	ILMN_50522	LOC367387	XM_578829.1	XM_578829.1		367387	62717828	XM_578829.1	LOC367387	XP_578829.1	ILMN_1368210	0006980368	S	44	CACAGTACAGAAAGCCAGTGGACTGGCCCTGGGGGACATTGTGGGCTGCA					PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC367387), mRNA.					
Rattus norvegicus	RefSeq	GI_62663904-S	ILMN_267474	FAM107B	NM_001025034.1	NM_001025034.1		498796	68163502	NM_001025034.1	Fam107b	NP_001020205.1	ILMN_1360024	0002900398	S	521	GTGAAGGTGAAAGGCAATCTCAGGAGAACAGGCCAAGAGGTGGCCCAGGC	17	-	85595490-85595539	17q12.3	Rattus norvegicus family with sequence similarity 107, member B (Fam107b), mRNA.					
Rattus norvegicus	RefSeq	GI_47576764-S	ILMN_287636	OLR180	NM_001000180.1	NM_001000180.1		293327	47576764	NM_001000180.1	Olr180	NP_001000180.1	ILMN_1371692	0005420286	S	868	GCCCTTAATCCTCTGATTTATGGGGTAAGGACCAAGCAGATTCGGGCACG	1	-	162739554-162739603	1q33	Rattus norvegicus olfactory receptor 180 (Olr180), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr180; ratchr1-162835948-162834998_ORF	Olr180; ratchr1-162835948-162834998_ORF
Rattus norvegicus	RefSeq	GI_62639736-S	ILMN_275321	SNRP70_PREDICTED	XM_001079238.1	XM_001079238.1		361574	109461921	XM_001079238.1	Snrp70_predicted	XP_001079238.1	ILMN_1359735	0006040500	S	1458	CAGCGGTCAGGACAATGGGCTGGAAGGGCTAGGTAGTGATGGTCGAGACA				1q22	PREDICTED: Rattus norvegicus U1 small nuclear ribonucleoprotein polypeptide A (predicted) (Snrp70_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62650282	ILMN_52025	RGD1560519_PREDICTED	XM_233829.4	XM_233829.4		313865	109477885	XM_233829.4	RGD1560519_predicted	XP_233829.4	ILMN_1650930	0003390504	S	6611	TGCAAAGGACAGCGTCAGAGCAGCATCGCCTCATCTCTCAGCTCTTCAGA	6	-	7539102-7539151	6q12	PREDICTED: Rattus norvegicus similar to thyroid adenoma associated (predicted) (RGD1560519_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_13928815-S	ILMN_291258	EIF2AK3	NM_031599.1	NM_031599.1		29702	13928815	NM_031599.1	Eif2ak3	NP_113787.1	ILMN_1374121	0001230577	S	3976	CATGTGACCCATCTGCACTATTTTGGAAGGCGCAGCACAGGCTGGGTGGC	4	+	104077745-104077794	4q32	Rattus norvegicus eukaryotic translation initiation factor 2 alpha kinase 3 (Eif2ak3), mRNA.	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope [goid 5623] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence ISS]; The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate [goid 2063] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; The process of apoptosis in cells infected with a virus [goid 6926] [evidence ISS]; The process of apoptosis in cells infected with a virus [goid 6926] [evidence IEA]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the endoplasmic reticulum [goid 7029] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the endoplasmic reticulum [goid 7029] [evidence IEA]; The intracellular signaling cascade that results when a cell is triggered to undergo apoptosis [goid 8632] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 17148] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IEA]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence ISS]; The deposition of calcium phosphate in bone tissue [goid 30282] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes [goid 31016] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation of a myelin sheath around nerve axons [goid 31642] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the formation of a myelin sheath around nerve axons [goid 31642] [evidence IEA]; Any process that stops, prevents or reduces the rate of translation as a result of a stimulus indicating the organism is under stress [goid 32055] [evidence IDA]; Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress [goid 32057] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of protein binding [goid 32092] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of protein binding [goid 32092] [evidence IEA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IMP]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands [goid 48009] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB [goid 6983] [evidence ISS]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence ISS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence IMP]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence IDA]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2) [goid 4694] [evidence ISS]	PEK	PEK
Rattus norvegicus	RefSeq	GI_62650606-S	ILMN_68207	LOC497816	XM_579438.1	XM_579438.1		497816	62650606	XM_579438.1	LOC497816	XP_579438.1	ILMN_1354948	0005130717	S	2287	GGTAGTGCAGCCAGTGTTGTGGAATTTCCTAGAACTGTGGGAGGTTCTCC					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019371 (LOC497816), mRNA.					
Rattus norvegicus	RefSeq	GI_62643559-S	ILMN_53285	LOC361960	XM_347013.2	XM_347013.2		361960	62643559	XM_347013.2	LOC361960	XP_347014.1	ILMN_1351671	0006660161	S	369	TTTGGAGAGGTTCTGCTGACAAGATCCCAGACCCACGAGCACCCAGCACA					PREDICTED: Rattus norvegicus hypothetical LOC361960 (LOC361960), mRNA.					
Rattus norvegicus	RefSeq	GI_62663991-S	ILMN_67101	RGD1562707_PREDICTED	XM_574093.2	XM_574093.2		498809	109505318	XM_574093.2	RGD1562707_predicted	XP_574093.2	ILMN_1364417	0002970670	S	2275	CGGACTGCACACAATGAGTGGCCTGATGAGTGGACCGTTGGACAACTTGG	17	-	97081566-97081615	17q12.3	PREDICTED: Rattus norvegicus similar to CG8201-PO, isoform O (predicted) (RGD1562707_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662047-S	ILMN_58870	MBNL2_PREDICTED	XM_214253.3	XM_214253.3		290494	62662047	XM_214253.3	Mbnl2_predicted	XP_214253.3	ILMN_1355886	0000770372	S	4077	CGGCAGTGGCTTAAAACAGAGTGGTTGAAACAGAACTGCTCTCGGGGACC					PREDICTED: Rattus norvegicus muscleblind-like 2 (predicted) (Mbnl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652927-S	ILMN_285881	MGC114417	XM_001055014.1	XM_001055014.1		300149	109482739	XM_001055014.1	MGC114417	XP_001055014.1	ILMN_1362428	0001990059	S	3030	AGACTTCCCTGTGGGTGCCTGGAAGCACGGAGAGTATGAGTGCATGTCTC				7q34	PREDICTED: Rattus norvegicus similar to hypothetical protein D15Ertd785e (MGC114417), mRNA.					
Rattus norvegicus	RefSeq	GI_62646441-S	ILMN_283594	RGD1310643_PREDICTED	XM_001053920.1	XM_001053920.1		296409	109471410	XM_001053920.1	RGD1310643_predicted	XP_001053920.1	ILMN_1368266	0001090079	S	2337	CCCAGGAGAGAGATGAACGCAATGAGATCCTGTGTGGAAGCAGTCACCTG				3q42	PREDICTED: Rattus norvegicus similar to HEF-like protein (predicted) (RGD1310643_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657396	ILMN_266656	SOX9	XM_001081628.1	XM_001081628.1		140586	109492165	XM_001081628.1	Sox9	XP_001081628.1	ILMN_1650206	0005050377	S	1657	TCCCAGAGAACGCACATCAAGACGGAGCAACTGAGCCCGAGCCACTACAG				10q32.1	PREDICTED: Rattus norvegicus SRY-box containing gene 9 (Sox9), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IMP]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence IMP]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence IMP]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence IMP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IMP]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IMP]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IMP]; The determination of sex and sexual phenotype in a male organism's germ line [goid 19100] [evidence IMP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IMP]; The specification of male sex of an individual organism [goid 30238] [evidence IGI]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence TAS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62657288-S	ILMN_266656	SOX9	XM_001081628.1	XM_001081628.1		140586	109492165	XM_001081628.1	Sox9	XP_001081628.1	ILMN_1361412	0004280300	S	638	AGAACACGTTCCCCAAGGGCGAGCCGGATCTGAAGAAGGAGAGCGAGGAA				10q32.1	PREDICTED: Rattus norvegicus SRY-box containing gene 9 (Sox9), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]	The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence IMP]; The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment [goid 1708] [evidence IMP]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [evidence IMP]; The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open [goid 1942] [evidence IMP]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IMP]; The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure [goid 8584] [evidence IMP]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IMP]; The determination of sex and sexual phenotype in a male organism's germ line [goid 19100] [evidence IMP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IMP]; The specification of male sex of an individual organism [goid 30238] [evidence IGI]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IMP]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence TAS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEP]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_27707415-S	ILMN_266380	USP26_PREDICTED	XM_228680.1	XM_228680.1		302488	27707415	XM_228680.1	Usp26_predicted	XP_228680.1	ILMN_1366738	0003940020	S	2049	ACCCAGCTCCCAGGAACAGACAGAAAACCTTGGGAAACCTGCAGTGTCAC	X	-	138626735-138626784	Xq36	PREDICTED: Rattus norvegicus ubiquitin specific peptidase 26 (predicted) (Usp26_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576470-S	ILMN_266608	OLR889	NM_001000061.1	NM_001000061.1		288818	47576470	NM_001000061.1	Olr889	NP_001000061.1	ILMN_1353318	0000630446	S	569	CATGGTTTTTGGAGCAGACTGTCATTGCTTGTGCAGTGCTGACTTTCGTC	7	-	3161072-3161121	7q11	Rattus norvegicus olfactory receptor 889 (Olr889), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr889	Olr889
Rattus norvegicus	RefSeq	GI_55741478-S	ILMN_286537	MRPL34	NM_001006965.1	NM_001006965.1		290632	55741478	NM_001006965.1	Mrpl34	NP_001006966.1	ILMN_1351362	0002370168	S	321	AATAGACTCAGACGCTGGTCGAGTTGCCCGAGGGCGAGAAGTTGGGGCAA	16	+	18636628-18636677	16p14	Rattus norvegicus mitochondrial ribosomal protein L34 (Mrpl34), nuclear gene encoding mitochondrial protein, mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence IEA]; The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site) [goid 5762] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC105750	MGC105750
Rattus norvegicus	RefSeq	GI_62657041-S	ILMN_62159	RGD1311859_PREDICTED	XM_220974.4	XM_220974.4		303534	109489015	XM_220974.4	RGD1311859_predicted	XP_220974.3	ILMN_1373823	0000050524	S	1775	TCGAGAAGAGCAGGAGAGGGTGGTGAAGCAGTGGGAGAGGGAACTGGAGA	10	+	89516351-89516400	10q32.1	PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434H0115 (predicted) (RGD1311859_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647072-S	ILMN_268129	RGD1565435_PREDICTED	XR_008396.1	XR_008396.1		502743	109473328	XR_008396.1	RGD1565435_predicted		ILMN_1359076	0002510390	S	260	CCAAGAAGGGCTCAGAGAAGTGGAAGATCATGTCTGCTAAAGAGAAGGGG				4q22	PREDICTED: Rattus norvegicus similar to Hmgb1 protein (predicted) (RGD1565435_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_51854236-S	ILMN_289477	PON3	NM_001004086.1	NM_001004086.1		312086	51854236	NM_001004086.1	Pon3	NP_001004086.1	ILMN_1356386	0000070048	S	1374	CCAGCAATGTCACCTCCTACACCTGTGATAGTCTGAGGCTTCTGCAGTCC	4	-	30000533-30000582	4q13	Rattus norvegicus paraoxonase 3 (Pon3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]		Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol [goid 4063] [evidence IDA]; Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate [goid 4064] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC95026	MGC95026
Rattus norvegicus	RefSeq	GI_62649225-S	ILMN_266767	DMRTA1_PREDICTED	XM_001055710.1	XM_001055710.1		313352	109476742	XM_001055710.1	Dmrta1_predicted	XP_001055710.1	ILMN_1368307	0006760736	S	2691	GGATTATGCATTTCCAGGGATGATTAGGGAGCCGCCCCACCTTCCTAGCA				5q32	PREDICTED: Rattus norvegicus doublesex and mab-3 related transcription factor like family A1 (predicted) (Dmrta1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642688-S	ILMN_56284	LOC499492	XM_574817.1	XM_574817.1		499492	62642688	XM_574817.1	LOC499492	XP_574817.1	ILMN_1373877	0001580438	S	555	GCCTGTCCAGAGCGGGAAACCCTTCCACTCAAGTACACTCAAATACGGGG					PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC499492), mRNA.					
Rattus norvegicus	RefSeq	GI_47576988	ILMN_272518	OLR270	NM_001000229.1	NM_001000229.1		293437	47576988	NM_001000229.1	Olr270	NP_001000229.1	ILMN_1650593	0001980593	S	728	CCTGCACCTCCCATCTCACTGCAGTCACTCTTTTCTATGGGACTGTAATG	1	+	166000732-166000781	1q33	Rattus norvegicus olfactory receptor 270 (Olr270), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr270; ratchr1-166110668-166111612_ORF	Olr270; ratchr1-166110668-166111612_ORF
Rattus norvegicus	RefSeq	GI_62649114-S	ILMN_298921	TLE1_PREDICTED	XM_001066887.1	XM_001066887.1		362533	109476654	XM_001066887.1	Tle1_predicted	XP_001066887.1	ILMN_1352196	0000780136	S	4050	GCTGGTAGCAATCTTCTTGTCTCAGCTTGGACTACAAGTGTGGGCCACCG				5q31	PREDICTED: Rattus norvegicus transducin-like enhancer of split 1, homolog of Drosophila E(spl) (predicted) (Tle1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_21955258-S	ILMN_279999	OLFM3	NM_145777.1	NM_145777.1		252920	21955258	NM_145777.1	Olfm3	NP_665720.1	ILMN_1374487	0003060022	S	3479	GGATGATCATGGCTTTTCGTGAGGTGTGCATCTTGTACAGAGCCCTGTTG	2	+	211163894-211163943	2q41	Rattus norvegicus olfactomedin 3 (Olfm3), mRNA.	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]	Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577760-S	ILMN_262678	OLR1249	NM_001001020.1	NM_001001020.1		405396	47577760	NM_001001020.1	Olr1249	NP_001001020.1	ILMN_1351041	0007000181	S	123	GAACTTGACCCTAATCCTTCTAACTGTGCTGAACTCTCACCTTCACACCC	8	+	40725567-40725616	8q22	Rattus norvegicus olfactory receptor 1249 (Olr1249), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]	Olr1249	Olr1249
Rattus norvegicus	RefSeq	GI_62659570-S	ILMN_57055	LOC498260	XM_573485.1	XM_573485.1		498260	62659570	XM_573485.1	LOC498260	XP_573485.1	ILMN_1358831	0000610100	S	18	CCTGGAGAGTCTGGCTCTTTTCTTGGACCAAACCCACTTGGAGAAAGCGC					PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC498260), mRNA.					
Rattus norvegicus	RefSeq	GI_62078916-S	ILMN_285261	PAQR5	NM_001014092.1	NM_001014092.1		315741	62078916	NM_001014092.1	Paqr5	NP_001014114.1	ILMN_1350402	0006510441	S	3413	CTGACATCAGCCTCTGGCCGTGTGCATCAGCATAGGTGGGTGTGTCTAGG	8	-	66084314-66084363	8q24	Rattus norvegicus progestin and adipoQ receptor family member V (Paqr5), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Pmrgamma; RGD1311259	Pmrgamma; RGD1311259
Rattus norvegicus	RefSeq	GI_62667053	ILMN_63960	IL2RG	XM_343800.2	XM_343800.2		140924	62667053	XM_343800.2	Il2rg	XP_343801.2	ILMN_1651036	0005900021	S	1246	CAAGAGTGGTGGAACCCAGCAGACCCCTAGCCCAAGCAGCCAACTGAAGT				Xq31	PREDICTED: Rattus norvegicus interleukin 2 receptor, gamma (severe combined immunodeficiency) (Il2rg), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IMP]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells [goid 32831] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells [goid 32831] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell differentiation in the thymus [goid 33089] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an interleukin to initiate a change in cell activity [goid 4907] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 19955] [evidence TAS]; Interacting selectively with interleukin-2 [goid 19976] [evidence IEA]; Interacting selectively with interleukin-2 [goid 19976] [evidence ISS]; Interacting selectively with interleukin-2 [goid 19976] [evidence IMP]; Interacting selectively with interleukin-7 [goid 19982] [evidence IMP]		
Rattus norvegicus	RefSeq	GI_62665693-S	ILMN_61651	LOC499404	XM_579960.1	XM_579960.1		499404	62665693	XM_579960.1	LOC499404	XP_579960.1	ILMN_1370079	0003140717	S	472	GACTCGCCAGGCCTTCAGAGGCACGGACATGGTGAAGGGGTAACCAAGAT					PREDICTED: Rattus norvegicus LOC499404 (LOC499404), mRNA.					
Rattus norvegicus	RefSeq	GI_62662762-S	ILMN_273365	RGD1561067_PREDICTED	XM_001059526.1	XM_001059526.1		498642	109504259	XM_001059526.1	RGD1561067_predicted	XP_001059526.1	ILMN_1358755	0003850156	S	2169	TCTGTAAACTAGAGGCCGGGGCAGGCAGCACTGGGGAATTAGCATCCAGG				16q12.3	PREDICTED: Rattus norvegicus similar to RNA binding protein gene with multiple splicing (predicted), transcript variant 2 (RGD1561067_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656921-S	ILMN_55114	RGD1559720_PREDICTED	XM_213445.4	XM_213445.4		287661	109488912	XM_213445.4	RGD1559720_predicted	XP_213445.3	ILMN_1368761	0006900369	S	548	GTACCCACAAGAGTGAGCAGGTACAGAAAGCGGAAGTAGGCTCCCCGCTC	10	+	86437702-86437751	10q31	PREDICTED: Rattus norvegicus RGD1559720 (predicted) (RGD1559720_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62639684-S	ILMN_276008	FUZ	NM_001037646.1	NM_001037646.1		308577	83320079	NM_001037646.1	Fuz	NP_001032735.1	ILMN_1367392	0006660471	S	955	CCACCACCCACTTCCCACCAGAACCGGGGCCAGCAGAGAAACAAGAAGAT	1	+	95372041-95372061:95372886-95372914	1q22	Rattus norvegicus fuzzy homolog (Drosophila) (Fuz), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]			MGC125220; Fuz	MGC125220; Fuz
Rattus norvegicus	RefSeq	GI_62664737-S	ILMN_58342	RGD1564376_PREDICTED	XM_574185.2	XM_574185.2		498898	109506877	XM_574185.2	RGD1564376_predicted	XP_574185.2	ILMN_1354264	0006840600	S	1831	CTCCAGTTTGAGCCTGGGTGGCACTGACATTTGTCCTTAAGGTTAGGTGC	18	-	86187926-86187975	18q13	PREDICTED: Rattus norvegicus similar to docking protein 5-like (predicted) (RGD1564376_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_52345429-S	ILMN_289285	PSMA3	NM_017280.2	NM_017280.2		29670	52345429	NM_017280.2	Psma3	NP_058976.1	ILMN_1350746	0002450541	S	1629	CTGAACTTGGGTCCTGTGTAAGAGCAACACGTCCTCTTAACCACTGAGCC	6	+	93111829-93111878	6q24	Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 3 (Psma3), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]	Psma3l	Psma3l
Rattus norvegicus	RefSeq	GI_62639025-S	ILMN_56278	LOC365189	XM_344858.2	XM_344858.2		365189	62639025	XM_344858.2	LOC365189	XP_344859.2	ILMN_1359972	0004120463	S	1586	GGTGGTCCATTTGAAGGAGGATATCCAAGTACCCACCTCTGTCTGCAGTG					PREDICTED: Rattus norvegicus similar to putative odorant receptor (LOC365189), mRNA.					
Rattus norvegicus	RefSeq	GI_20302082-S	ILMN_266635	GRASP	NM_138894.1	NM_138894.1		192254	20302082	NM_138894.1	Grasp	NP_620249.1	ILMN_1371821	0000050446	S	1285	TCATCGTAACAGCCAGTGCAAAAAGTAGGGGCAGTAGGGGCGGTCCAAGG	7	+	139977758-139977807	7q36	Rattus norvegicus GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein (Grasp), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IPI]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IDA]; Interacting selectively with ARF, ADP-ribosylation factor, a small monomeric cytosolic GTPase that, when bound to GTP, binds to the membranes of cells [goid 30306] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62656302-S	ILMN_59215	LOC497936	XM_573123.1	XM_573123.1		497936	62656302	XM_573123.1	LOC497936	XP_573123.1	ILMN_1351141	0006450167	S	763	CCTCCAGAATTTACAGGACTGAGGGACAGGACTTGAGAAGAAACCACCAC					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2600017H02 (LOC497936), mRNA.					
Rattus norvegicus	RefSeq	GI_62652521-S	ILMN_50368	RNF139_PREDICTED	XM_235338.4	XM_235338.4		315000	109480807	XM_235338.4	Rnf139_predicted	XP_235338.4	ILMN_1355013	0007050592	S	1726	GATGCTGCTGGATCTGACCGAGAAATGAACGAGGATGACAGTACAGACTG	7	+	95660755-95660804	7q33	PREDICTED: Rattus norvegicus ring finger protein 139 (predicted) (Rnf139_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_40254768-S	ILMN_268105	OAT	NM_022521.2	NM_022521.2		64313	40254768	NM_022521.2	Oat	NP_071966.1	ILMN_1352155	0002640053	S	1582	CTGCAGGTGGCTGCGTGACACAAGAGTGAGAGCGAGAGGCATCTCTTTGT	1	-	192027139-192027188	1q41	Rattus norvegicus ornithine aminotransferase (gyrate atrophy) (Oat), nuclear gene encoding mitochondrial protein, mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis [goid 6591] [evidence TAS]	Catalysis of the reaction: N2-acetyl-L-ornithine + 2-oxoglutarate = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate [goid 3992] [evidence TAS]; Catalysis of the reaction: L-ornithine + a 2-oxo acid = L-glutamate 5-semialdehyde + an L-amino acid [goid 4587] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]	rOAT	rOAT
Rattus norvegicus	RefSeq	GI_62654213-S	ILMN_271128	DNAJC13_PREDICTED	XM_001072547.1	XM_001072547.1		363127	109485311	XM_001072547.1	Dnajc13_predicted	XP_001072547.1	ILMN_1358984	0003190215	S	7333	GTCCCTCCACCTGTGACCAGACCCTCAGTCATTAACTCTACGAGAGCTCG				8q32	PREDICTED: Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 13 (predicted) (Dnajc13_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657467-S	ILMN_66796	RGD1307410	XM_340946.3	XM_340946.3		360673	109489460	XM_340946.3	RGD1307410	XP_340947.3	ILMN_1367798	0006220093	S	1695	CAGATTTGCAGAAGGTGACCACAGAGCCTCCAGTTTCAGAGCCATCCGCT	10	-	109504104-109504153	10q32.3	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31528, transcript variant 2 (RGD1307410), mRNA.					
Rattus norvegicus	RefSeq	GI_56605723-S	ILMN_285833	PMM1	NM_001008323.1	NM_001008323.1		300089	56605723	NM_001008323.1	Pmm1	NP_001008324.1	ILMN_1357241	0004560278	S	1030	GCCCTGGCCTCTGACGCTGCTGGTTTTGGGGACAGAATAGGTTTTACCAC	7	-	120323926-120323975	7q34	Rattus norvegicus phosphomannomutase 1 (Pmm1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose [goid 19307] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: D-mannose 1-phosphate = D-mannose 6-phosphate [goid 4615] [evidence IEA]	MGC105960	MGC105960
Rattus norvegicus	RefSeq	GI_62656958	ILMN_264712	KRT25	NM_001008822.1	NM_001008822.1		303519	57012369	NM_001008822.1	Krt25	NP_001008822.1	ILMN_1649817	0006450671	S	1274	TGGACCAACGCAGCAAGATTCTAACCACTAGGCTCCACTCCCTGGAAGAG	10	-	88217598-88217647	10q32.1	Rattus norvegicus keratin 25 (Krt25), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]	The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ka38	Ka38
Rattus norvegicus	RefSeq	GI_62661777-S	ILMN_269765	PCDH20_PREDICTED	XM_001074783.1	XM_001074783.1		306081	109502813	XM_001074783.1	Pcdh20_predicted	XP_001074783.1	ILMN_1350592	0001660390	S	3781	CCCCCCGTGGGTTTAATGTTAGCCTGAGTACACTTCTGTTCACCTACACT				15q12	PREDICTED: Rattus norvegicus protocadherin 20 (predicted) (Pcdh20_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62654211-S	ILMN_68550	LOC315973	XM_236582.3	XM_236582.3		315973	62654211	XM_236582.3	LOC315973	XP_236582.3	ILMN_1365021	0001230215	S	3631	TGCTGGGGAAGGCGGTTGAGTATAGTTGGAAAGGCATGGGTGGGTACAGC				8q32	PREDICTED: Rattus norvegicus similar to 5730439E10Rik protein (predicted) (LOC315973), mRNA.					
Rattus norvegicus	RefSeq	GI_62664102	ILMN_300574	RGD1562080_PREDICTED	XM_574108.1	XM_574108.1		498827	62664102	XM_574108.1	RGD1562080_predicted	XP_574108.1	ILMN_1651044	0006590026	S	1956	AACACTGGCGTTCTTGCTGCCCTTGTCTGCTGGAAGCGGTGGTTGTGGTG	18	-	12944289-12944338	18p12	PREDICTED: Rattus norvegicus similar to Hypothetical protein CBG10141 (predicted) (RGD1562080_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656016-S	ILMN_67081	RASGEF1C_PREDICTED	XM_340792.3	XM_340792.3		360519	109488037	XM_340792.3	Rasgef1c_predicted	XP_340793.3	ILMN_1370692	0003170725	S	1992	CAGGATAGCCCCCTGGCGACTGCGGTGAAACAAGTCACTGAGACAAACCG	10	+	35470070-35470119	10q22	PREDICTED: Rattus norvegicus RasGEF domain family, member 1C (predicted) (Rasgef1c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642900-S	ILMN_66854	ERCC8_PREDICTED	XM_226789.4	XM_226789.4		310071	109464368	XM_226789.4	Ercc8_predicted	XP_226789.3	ILMN_1366313	0005290504	S	1804	ACTGCTGTCCGCCTGCCCTTCCCACTTACAGGGAGGTTTTAGCAAGGGTA	2	+	39420087-39420136	2q14	PREDICTED: Rattus norvegicus excision repair cross-complementing rodent repair deficiency, complementation group 8 (predicted) (Ercc8_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658782-S	ILMN_273556	WBSCR17	NM_001025112.1	NM_001025112.1		288611	68341982	NM_001025112.1	Wbscr17	NP_001020283.1	ILMN_1356208	0002350504	S	1456	AACCACACAGCAATACTCTACCCATGCCACGGTTGGGGACCACAGCTCGC	12	+	26818158-26818201:26819942-26819947	12q12	Rattus norvegicus Williams-Beuren syndrome chromosome region 17 homolog (human) (Wbscr17), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62648289-S	ILMN_282149	RGD1565381_PREDICTED	XM_001072640.1	XM_001072640.1		297698	109474421	XM_001072640.1	RGD1565381_predicted	XP_001072640.1	ILMN_1362255	0000070129	S	684	GGATGACAAGTGGGACGCCCTGACCATCACAGAAGTTACGGTGGAGAAGG				4q43	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810033M07 (predicted) (RGD1565381_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62652780-S	ILMN_63551	LOC315117	XM_235476.3	XM_235476.3		315117	62652780	XM_235476.3	LOC315117	XP_235476.3	ILMN_1366839	0002570593	S	3599	TGCCAGCAACACACAGAGCATTTGTGGGCATCTGAATTGGGCCAAGCCCC				7q34	PREDICTED: Rattus norvegicus similar to Hypothetical protein 6330514E13 (LOC315117), mRNA.					
Rattus norvegicus	RefSeq	GI_62666032	ILMN_267155	LOC678867	XM_001053577.1	XM_001053577.1		678867	109510057	XM_001053577.1	LOC678867	XP_001053577.1	ILMN_1650318	0003140279	S	1365	GCGCCACCTTGCTGAGAGCTTTGGACTGAAGAGGGATGAGATTGGGGGCA					PREDICTED: Rattus norvegicus similar to Tumor necrosis factor receptor superfamily member EDAR precursor (Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A receptor) (Ectodermal dysplasia receptor) (Downless) (LOC678867), mRNA.		The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576092-S	ILMN_282993	OLR1404	NM_001000787.1	NM_001000787.1		405065	47576092	NM_001000787.1	Olr1404	NP_001000787.1	ILMN_1357739	0005700193	S	586	GACATCACAGCCTTCACTGTGGGTGGGCTGACCTCTATCACACCATTCAC	10	+	36544006-36544055	10q22	Rattus norvegicus olfactory receptor 1404 (Olr1404), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr10	tpcr10
Rattus norvegicus	RefSeq	GI_62642195-S	ILMN_53194	PANK1_PREDICTED	XM_215283.4	XM_215283.4		294088	109460023	XM_215283.4	Pank1_predicted	XP_215283.3	ILMN_1356675	0002450082	S	3057	CCGGGCCTAGGGCAAAAGTCCTGGGTTGAGATGTTAGAAATCATGGTCTG	1	-	238798346-238798395	1q52	PREDICTED: Rattus norvegicus pantothenate kinase 1 (predicted) (Pank1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11612652-S	ILMN_274559	FXYD5	NM_021909.1	NM_021909.1		60338	11612652	NM_021909.1	Fxyd5	NP_068709.1	ILMN_1371590	0000630594	S	789	GGTCAACATAAATGGATCCTCAAAGGAAGAGGCCACCGGAGGGAGCCAGG	1	-	86076379-86076428	1q21	Rattus norvegicus FXYD domain-containing ion transport regulator 5 (Fxyd5), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence IEA]; Interacting selectively with cadherin, a type I membrane protein involved in cell adhesion [goid 45296] [evidence ISS]	RIC	RIC
Rattus norvegicus	RefSeq	GI_56090342-S	ILMN_289605	INTS12	NM_001007640.1	NM_001007640.1		295448	56090342	NM_001007640.1	Ints12	NP_001007641.1	ILMN_1351369	0001740193	S	1281	GCAGCACCTCAGCGTCTCTTAAAGGTCCAACTTCCCAGGAATCTCAGCTC	2	+	230626791-230626840	2q43	Rattus norvegicus integrator complex subunit 12 (Ints12), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II [goid 32039] [evidence IEA]; A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II [goid 32039] [evidence ISS]	Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule [goid 16180] [evidence IEA]; Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule [goid 16180] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94937	MGC94937
Rattus norvegicus	RefSeq	GI_27697024-S	ILMN_51376	OSBP2_PREDICTED	XM_223556.4	XM_223556.4		305475	109499975	XM_223556.4	Osbp2_predicted	XP_223556.4	ILMN_2039619	0001400414	S	2533	TGTGGCGGGGAGGAAGAGAAGGAGTCAGATGGCTATTCGCCGCTGTGGTT	14	-	84351940-84351974:84352206-84352220	14q21	PREDICTED: Rattus norvegicus oxysterol binding protein 2 (predicted) (Osbp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660718-S	ILMN_51376	OSBP2_PREDICTED	XM_223556.4	XM_223556.4		305475	109499975	XM_223556.4	Osbp2_predicted	XP_223556.4	ILMN_1355199	0002760452	S	2621	GCATATACAAGGGCGGCTACTGGGAGGCCAAGGAGAAGAAGGACTGGCAC	14	-	84351852-84351901	14q21	PREDICTED: Rattus norvegicus oxysterol binding protein 2 (predicted) (Osbp2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718020-S	ILMN_291280	LOC363326	XM_343664.2	XM_343664.2		363326	62718020	XM_343664.2	LOC363326	XP_343665.1	ILMN_1353902	0001990324	S	796	GGAGCCCCCACTTCTTATGTCTCTCATGTAGGCAAGCACCAAGAGCCCCA	Un|NW_047865.1	+	1486-1535		PREDICTED: Rattus norvegicus hypothetical LOC363326 (LOC363326), mRNA.					
Rattus norvegicus	RefSeq	GI_62642298-S	ILMN_57919	TBC1D12_PREDICTED	XM_220062.4	XM_220062.4		294071	109460100	XM_220062.4	Tbc1d12_predicted	XP_220062.4	ILMN_1353127	0004590739	S	1069	CCTCAGTCTGATCTCCAGGCCCAAGATAGATGTCATAGAATTGGTCAGAC	1	+	243255958-243256007	1q53	PREDICTED: Rattus norvegicus TBC1D12: TBC1 domain family, member 12 (predicted) (Tbc1d12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62663667-S	ILMN_61824	RGD1562037_PREDICTED	XM_574050.2	XM_574050.2		498764	109505048	XM_574050.2	RGD1562037_predicted	XP_574050.2	ILMN_1354403	0006040056	S	3055	GAAACTGGGGTTTGCAGTGTCCGACTCATCCTTCGACAGCCATCCCTACG	17	-	61353034-61353083	17q12.1	PREDICTED: Rattus norvegicus similar to OTTHUMP00000046255 (predicted) (RGD1562037_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62641591-S	ILMN_265471	IFITM3	XM_341957.2	XM_341957.2		361673	62641591	XM_341957.2	Ifitm3	XP_341958.1	ILMN_1352762	0002680162	S	502	CCAGACTTGATAGAGGATTCTGGTTTCTGATCCTGACGTGCTCCACCATC	1	-	201198756-201198796:201198797-201198805	1q41	PREDICTED: Rattus norvegicus interferon induced transmembrane protein 3 (Ifitm3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]	Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism [goid 9607] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62660609-S	ILMN_277386	RGD1310481_PREDICTED	XM_001062482.1	XM_001062482.1		360952	109500801	XM_001062482.1	RGD1310481_predicted	XP_001062482.1	ILMN_1349732	0006200746	S	973	CACAGGAGCACAGTCCCCAGGTTTACAGTCTGGCCCATCTACTTGAAGGC				14q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810021O14 (predicted) (RGD1310481_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640801-S	ILMN_54882	LOC361599	XM_346991.2	XM_346991.2		361599	62640801	XM_346991.2	LOC361599	XP_346992.2	ILMN_1364261	0004150154	S	577	CTAGGGTGCTGGAGAGCCGCATTCGAGAAGCTATGGACAATGATCCTCCT					PREDICTED: Rattus norvegicus similar to epididymal protein (LOC361599), mRNA.					
Rattus norvegicus	RefSeq	GI_62664810-S	ILMN_264972	KIFC3	XM_001061174.1	XM_001061174.1		307644	109508409	XM_001061174.1	Kifc3	XP_001061174.1	ILMN_1359113	0000110736	S	3212	AGGGGTCTGGGCTATATTTATGGCTGGCAGAGGCCAGTGTGGAAGGGCTG				19p13	PREDICTED: Rattus norvegicus kinesin family member C3 (Kifc3), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence ISS]; Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work [goid 5871] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence ISS]; Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62661462-S	ILMN_65966	LOC361039	XM_341316.2	XM_341316.2		361039	62661462	XM_341316.2	LOC361039	XP_341317.2	ILMN_1372834	0006290022	S	1672	GAGCTGGCACTAGCAGGTGTTATTTCTACAGCCCATCCATCACCACGAGC				15p13	PREDICTED: Rattus norvegicus similar to leishmanolysin-like (metallopeptidase M8 family) (LOC361039), mRNA.					
Rattus norvegicus	RefSeq	GI_62653925-S	ILMN_287000	RPL12_PREDICTED	XM_001059627.1	XM_001059627.1		296644	109485020	XM_001059627.1	Rpl12_predicted	XP_001059627.1	ILMN_1362817	0004070402	S	577	GCCCAGCTAGTTAAGAAGCAACAAGAAGGGGCTGGGGATTTAGCTCAGTG				8q31	PREDICTED: Rattus norvegicus ribosomal protein L12 (predicted) (Rpl12_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47577824-S	ILMN_295317	OLR1214	NM_001000438.1	NM_001000438.1		300538	47577824	NM_001000438.1	Olr1214	NP_001000438.1	ILMN_1360583	0001410161	S	368	CTGCTATCTGTAAGCCCTTGCTTTATCAGGTCACCATGTCTCATCAGGTC	8	+	39607824-39607873	8q21	Rattus norvegicus olfactory receptor 1214 (Olr1214), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1214; ratchr8-39616223-39617155_ORF	Olr1214; ratchr8-39616223-39617155_ORF
Rattus norvegicus	RefSeq	GI_25282410-S	ILMN_288517	YIF1	NM_172017.1	NM_172017.1		171441	25282410	NM_172017.1	Yif1	NP_742014.1	ILMN_1359864	0004480059	S	834	TAGATCTTTGCGGACTGCAGCTTGGGTCCTGACAGCATGGGGGGCCCACC	1	+	207715138-207715187	1q43	Rattus norvegicus Yip1 interacting factor homolog (S. cerevisiae) (Yif1), mRNA.	A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]			Yif1p	Yif1p
Rattus norvegicus	RefSeq	GI_13928959-S	ILMN_297756	ITGAD	NM_031691.1	NM_031691.1		64350	13928959	NM_031691.1	Itgad	NP_113879.1	ILMN_1350805	0001340736	S	3435	AGCCGGCCAGGCAGATTTCGGCTGTGAGACTCCTCCATATCTCGTGAGCT	1	+	187464089-187464138	1q36	Rattus norvegicus integrin, alpha D (Itgad), mRNA.	A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands [goid 8305] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any series of molecular signals generated as a consequence of an integrin binding to one of its physiological ligands [goid 7229] [evidence IEA]; The expansion of a T cell population following activation by an antigenic stimulus [goid 50798] [evidence ISS]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]	Itgax	Itgax
Rattus norvegicus	RefSeq	GI_53850593-S	ILMN_281761	N4BP2L2	NM_001005533.1	NM_001005533.1		288416	53850593	NM_001005533.1	N4bp2l2	NP_001005533.1	ILMN_1362176	0002340301	S	1748	TCCAGGGGGACCAGAGGTGGGGAGGCTCTCTAGGCTCACATAGTCAAGTA	12	+	4205314-4205363	12p12	Rattus norvegicus NEDD4 binding protein 2-like 2 (N4bp2l2), mRNA.					
Rattus norvegicus	RefSeq	GI_62652723-S	ILMN_271120	RGD1305415_PREDICTED	XR_009079.1	XR_009079.1		362958	109482559	XR_009079.1	RGD1305415_predicted		ILMN_1352662	0002900494	S	2585	TGCCTGGACGAGGACCGGCAGAGGGAAGAAGAGGAAGACAAGATGTTGGA				7q34	PREDICTED: Rattus norvegicus similar to CG11259-PA (predicted) (RGD1305415_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655854-S	ILMN_294261	RGD1559998_PREDICTED	XM_001059305.1	XM_001059305.1		287131	109490356	XM_001059305.1	RGD1559998_predicted	XP_001059305.1	ILMN_1367670	0002100068	S	2047	TGGCCTCTGACACTGGGCAGCAAGCGAGTATTCATGTCCCTGGTGAGGCA				10q12	PREDICTED: Rattus norvegicus similar to centrosomal protein 2 (predicted) (RGD1559998_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658724-S	ILMN_276399	SRCRB4D_PREDICTED	XM_001077242.1	XM_001077242.1		304401	109497186	XM_001077242.1	Srcrb4d_predicted	XP_001077242.1	ILMN_1352753	0004730088	S	533	CAAGGAAGGTGTTGACCAGTATAGCGCCCCCTACAGCCCTCCAAAATGGG				12q12	PREDICTED: Rattus norvegicus scavenger receptor cysteine rich domain containing, group B (4 domains) (predicted) (Srcrb4d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34873341-S	ILMN_276399	SRCRB4D_PREDICTED	XM_001077242.1	XM_001077242.1		304401	109497186	XM_001077242.1	Srcrb4d_predicted	XP_001077242.1	ILMN_2040818	0005360465	S	302	TGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCG				12q12	PREDICTED: Rattus norvegicus scavenger receptor cysteine rich domain containing, group B (4 domains) (predicted) (Srcrb4d_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643019-S	ILMN_50346	NIPBL	XM_238213.4	XM_238213.4		294787	109464469	XM_238213.4	NIPBL	XP_238213.4	ILMN_1359271	0006590577	S	9848	GTCACCCTGAAAACAGTACAAGAAAAGGGATCCCAGGCCATCTGGGAGCG	2	-	57909651-57909700	2q16	PREDICTED: Rattus norvegicus Nipped-B homolog (Drosophila) (NIPBL), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]		
Rattus norvegicus	RefSeq	GI_40254743-S	ILMN_266734	GNE	NM_053765.2	NM_053765.2		114711	40254743	NM_053765.2	Gne	NP_446217.1	ILMN_1370510	0000670670	S	2516	GGGAATAGACCTGGACTGAGACCCAAGAGCTACTGAGTGGAACCACGCTC	5	-	60506421-60506470	5q22	Rattus norvegicus glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase (Gne), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]	The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate [goid 6047] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria [goid 9103] [evidence IEA]; The chemical reactions and pathways resulting in the formation of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid [goid 46380] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-mannosamine [goid 8761] [evidence IDA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-mannosamine [goid 8761] [evidence IEA]; Catalysis of the reaction: ATP + N-acyl-D-mannosamine = ADP + N-acyl-D-mannosamine 6-phosphate [goid 9384] [evidence IDA]; Catalysis of the reaction: ATP + N-acyl-D-mannosamine = ADP + N-acyl-D-mannosamine 6-phosphate [goid 9384] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]	Uae1	Uae1
Rattus norvegicus	RefSeq	GI_62645919-S	ILMN_276001	HAO1_MAPPED	XM_001081256.1	XM_001081256.1		311446	109470869	XM_001081256.1	Hao1_mapped	XP_001081256.1	ILMN_2038974	0000240180	S	1017	GATGTCCTCGAGATACTGAAGGAAGAGTTCCGGCTGGCCATGGCTCTGAG				3q36	PREDICTED: Rattus norvegicus hydroxyacid oxidase 1 (mapped) (Hao1_mapped), mRNA.					
Rattus norvegicus	RefSeq	GI_62639696-S	ILMN_273879	RGD1309896_PREDICTED	XM_001080668.1	XM_001080668.1		361569	109461903	XM_001080668.1	RGD1309896_predicted	XP_001080668.1	ILMN_1349212	0003440022	S	5894	CCCTCTACCACTCTCTGCACCACTACAAATACCACACGTTTCTGCGCTGC				1q22	PREDICTED: Rattus norvegicus similar to KIAA1205 protein (predicted) (RGD1309896_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655585-S	ILMN_272381	RGD1560833_PREDICTED	XM_001075589.1	XM_001075589.1		497850	109489570	XM_001075589.1	RGD1560833_predicted	XP_001075589.1	ILMN_1361401	0006520121	S	770	AGTCTGGCCCAACACTGGTGAAGCAAAGCCATCCCAAGAATCCAAACGAC					PREDICTED: Rattus norvegicus similar to myocardin-related transcription factor B (predicted) (RGD1560833_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655571-S	ILMN_57498	LOC501208	XM_576634.1	XM_576634.1		501208	62655571	XM_576634.1	LOC501208	XP_576634.1	ILMN_1366674	0006020735	S	18	GGTAGCACCAGACACAACCTGATGGCAAGAGGCAAGCACAGGAAACCAAG					PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC501208), mRNA.					
Rattus norvegicus	RefSeq	GI_27715482-S	ILMN_267915	DOCK11	XM_001061988.1	XM_001061988.1		313438	109512493	XM_001061988.1	Dock11	XP_001061988.1	ILMN_2039187	0002360307	S	3884	TTCCATGTGGCTTTGTTTCACCTACAAGCAGAGGGAGCCTGGCCACTGAC				Xq12	PREDICTED: Rattus norvegicus dedicator of cytokinesis 11 (Dock11), mRNA.			Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence ISS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666466-S	ILMN_267915	DOCK11	XM_001061988.1	XM_001061988.1		313438	109512493	XM_001061988.1	Dock11	XP_001061988.1	ILMN_1349412	0007050097	S	6651	AGCAACTCGAAAGTGCCTGAAACTCGCAGCCGTGCGCTTGCTTTGTACTG				Xq12	PREDICTED: Rattus norvegicus dedicator of cytokinesis 11 (Dock11), mRNA.			Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence ISS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649935-S	ILMN_54998	RCC2_PREDICTED	XM_216557.4	XM_216557.4		298594	109475738	XM_216557.4	Rcc2_predicted	XP_216557.4	ILMN_1373128	0004570075	S	2254	TCTGCCGAGCCCATCCTGGCATTGACTTTGTGGCTGAGTTCCAAGGTGCC	5	+	159555224-159555273	5q36	PREDICTED: Rattus norvegicus regulator of chromosome condensation 2 (predicted) (Rcc2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644931-S	ILMN_56288	RGD1566351_PREDICTED	XM_575110.2	XM_575110.2		499776	109468032	XM_575110.2	RGD1566351_predicted	XP_575110.2	ILMN_1367691	0005390707	S	1560	GGCCAGGCTGCGGGAACCCATTGCCCAAGACCAACCTAAAATCCTAAGCA	3	-	11183573-11183622	3p11	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A130092J06 gene (predicted) (RGD1566351_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660014-S	ILMN_64917	DGKQ_PREDICTED	XM_223739.3	XM_223739.3		305622	62660014	XM_223739.3	Dgkq_predicted	XP_223739.3	ILMN_1360760	0002190673	S	4732	GTGGTCACATGCCGGTCAGAACAAGGAGGAGGGATGGGCCTCTGATCCTA					PREDICTED: Rattus norvegicus diacylglycerol kinase, theta (predicted) (Dgkq_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57527331-S	ILMN_286493	PSPH	NM_001009679.1	NM_001009679.1		304429	57527331	NM_001009679.1	Psph	NP_001009679.1	ILMN_1358252	0006590091	S	923	CCCGGTCACTCAGAACAACTCCACCTTCTCGACGCTACACAGTTGGGCTC	12	-	27969917-27969966	12q13	Rattus norvegicus phosphoserine phosphatase (Psph), mRNA.		The chemical reactions and pathways resulting in the formation of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid [goid 6564] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents [goid 8652] [evidence IEA]	Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: L(or D)-O-phosphoserine + H2O = L(or D)-serine + phosphate [goid 4647] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC109524	MGC109524
Rattus norvegicus	RefSeq	GI_62641994-S	ILMN_68791	LOC293746	XM_219594.3	XM_219594.3		293746	62641994	XM_219594.3	LOC293746	XP_219594.3	ILMN_1371757	0003610537	S	1559	CCTGTTGGAGCTTGTTCTGGCTGGGCTCTCCGTAATGCTGCGGTCAAAAG				1q43	PREDICTED: Rattus norvegicus similar to membrane-spanning 4-domains, subfamily A, member 4C (LOC293746), mRNA.					
Rattus norvegicus	RefSeq	GI_47575928-S	ILMN_296880	OLR1481	NM_001000527.1	NM_001000527.1		363639	47575928	NM_001000527.1	Olr1481	NP_001000527.1	ILMN_1349117	0000630408	S	837	AATGGTGACTCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAAAG	10	+	60582513-60582562	10q24	Rattus norvegicus olfactory receptor 1481 (Olr1481), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665535-A	ILMN_266623	RT1-M6-2	NM_001008853.1	NM_001008853.1		365527	57012355	NM_001008853.1	RT1-M6-2	NP_001008853.1	ILMN_1376917	0006760181	S	759	GTGGGCATCTGTGGTGGTGCCTTCTGGGGAGGAGCAGAAATACACTTGTC	20	+	1677335-1677384	20p12	Rattus norvegicus RT1 class I, M6, gene 2 (RT1-M6-2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62642369-S	ILMN_61059	HIF1AN_PREDICTED	XM_219961.4	XM_219961.4		309434	109460163	XM_219961.4	Hif1an_predicted	XP_219961.2	ILMN_1352849	0006940037	S	1085	AGAGGTCAAGGCCTCCCGCCAGGTGACTGCTATCCTGTCCACATGCTTCT	1	+	249617728-249617777	1q54	PREDICTED: Rattus norvegicus hypoxia-inducible factor 1, alpha subunit inhibitor (predicted) (Hif1an_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576996-S	ILMN_265223	OLR785	NM_001000603.1	NM_001000603.1		404792	47576996	NM_001000603.1	Olr785	NP_001000603.1	ILMN_1373222	0005050064	S	538	GACTTTCCCCGGTTCATCAAACTTGCTTGCACAGATACATACAAACTGGA	3	-	97606530-97606579	3q34	Rattus norvegicus olfactory receptor 785 (Olr785), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr785	Olr785
Rattus norvegicus	RefSeq	GI_47575920-S	ILMN_281856	OLR1472	NM_001000944.1	NM_001000944.1		405286	47575920	NM_001000944.1	Olr1472	NP_001000944.1	ILMN_1374593	0000060162	S	811	GAGGCTTCCATCTCTATCATGTACACAGTGGTGACTCCCATGCTGAACCC	10	+	60332550-60332599	10q24	Rattus norvegicus olfactory receptor 1472 (Olr1472), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1472	Olr1472
Rattus norvegicus	RefSeq	GI_16758123-S	ILMN_272038	SMPX	NM_053395.1	NM_053395.1		84416	16758123	NM_053395.1	Smpx	NP_445847.1	ILMN_1369003	0007100735	S	684	CCACCTGGGGAGTGTGGTTTTGAGGAGAGATGTGATTTTTATGGAGGGGG	X	-	58521209-58521258	Xq21	Rattus norvegicus small muscle protein, X-linked (Smpx), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_13324699	ILMN_294588	CHRNA1	NM_024485.1	NM_024485.1		79557	13324699	NM_024485.1	Chrna1	NP_077811.1	ILMN_1650089	0006520082	S	1425	AACAAGGATGAGCAGAAGCTGAACTAAGCCTCCCTCTGCCCCAGCTGCAG	3	-	56088129-56088168:56088169-56088178	3q23	Rattus norvegicus cholinergic receptor, nicotinic, alpha 1 (muscle) (Chrna1), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence TAS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence IEA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence ISS]; The process whose specific outcome is the progression of the neuromuscular junction over time, from its formation to the mature structure [goid 7528] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]	 [goid 4889] [evidence IDA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA];  [goid 4889] [evidence ISS]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence ISS]; Interacting selectively with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions [goid 42166] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658279-S	ILMN_269594	LOC685010	XM_001061892.1	XM_001061892.1		685010	109493705	XM_001061892.1	LOC685010	XP_001061892.1	ILMN_1356086	0001770044	S	722	AGAGTTCTCTGAAAGACAAGTGTGGTTCCAAAACAAATCCACCCGAGGCC	11|NW_047362.1	+	187162-187211		PREDICTED: Rattus norvegicus hypothetical protein LOC685010 (LOC685010), mRNA.					
Rattus norvegicus	RefSeq	GI_62659063-S	ILMN_268824	LOC304558	XM_001080633.1	XM_001080633.1		304558	109497546	XM_001080633.1	LOC304558	XP_001080633.1	ILMN_1357185	0006840452	S	2029	CATGGCAAGGAGGAGGGCGAGGCAGACAGGCTGGAACTGAAGGAGCTGTC				12q16	PREDICTED: Rattus norvegicus similar to TPR repeat-containing protein KIAA1043 (LOC304558), mRNA.			The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577288-S	ILMN_294709	OLR403	NM_001000381.1	NM_001000381.1		296666	47577288	NM_001000381.1	Olr403	NP_001000381.1	ILMN_1372064	0004810181	S	692	GAATCCGAAAAGCCTTGTCCACATGTGGCTCTCACCTCTGTGTGGTTTCC	3	+	16028765-16028814	3p11	Rattus norvegicus olfactory receptor 403 (Olr403), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-15924446-15925369_ORF; Olr403	ratchr3-15924446-15925369_ORF; Olr403
Rattus norvegicus	RefSeq	GI_13929087	ILMN_282332	RPO1-2	NM_031773.1	NM_031773.1		83582	13929087	NM_031773.1	Rpo1-2	NP_113961.1	ILMN_1651074	0000070494	S	3685	GGCCCAGGTTCACTCGCTGTTCCCTGCTTTGAGTAGTAGAGTGTGTCCGC	3	+	116730867-116730916	3q36	Rattus norvegicus RNA polymerase 1-2 (Rpo1-2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	RPA2	RPA2
Rattus norvegicus	RefSeq	GI_62647028-S	ILMN_69934	LOC500085	XM_575436.1	XM_575436.1		500085	62647028	XM_575436.1	LOC500085	XP_575436.1	ILMN_1353736	0001240288	S	1292	CAGACTACACTGCTGCATCCTGGGTTTCGGTTTTTGTGGGGAGGAGGGCC				4q22	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430071P14 gene (LOC500085), mRNA.					
Rattus norvegicus	RefSeq	GI_13591946-S	ILMN_264045	GAK	NM_031030.1	NM_031030.1		81659	13591946	NM_031030.1	Gak	NP_112292.1	ILMN_1356475	0002940026	S	4009	AGGCCCCTCTTCTGAGGCCTGTGATGACTATGGCTGCAGGAGCTGCTCAT	14	+	1709929-1709942:1709943-1709978	14p22	Rattus norvegicus cyclin G associated kinase (Gak), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence IDA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62666824-S	ILMN_280968	RGD1560139_PREDICTED	XM_001072471.1	XM_001072471.1		501555	109511760	XM_001072471.1	RGD1560139_predicted	XP_001072471.1	ILMN_1350366	0007050093	S	1663	GCCAAGAAGACGAGTCCCTGGGAAACACCGAGCCTCTTAGGAAACCCATC				Xq21	PREDICTED: Rattus norvegicus similar to Retinoic acid induced 2 (predicted) (RGD1560139_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11559955-S	ILMN_263132	HTR3B	NM_022189.1	NM_022189.1		58963	11559955	NM_022189.1	Htr3b	NP_071525.1	ILMN_1356352	0000460180	S	1190	CTCTCTCCGAACTCGGGATCAGGTTTACCAGAAGGAGGTGGAGTGGCTCG	8	-	52198538-52198587	8q23	Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 3b (Htr3b), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The series of molecular signals generated as a consequence of a serotonin receptor binding to one of its physiological ligands [goid 7210] [evidence ISS]; The series of molecular signals generated as a consequence of a serotonin receptor binding to one of its physiological ligands [goid 7210] [evidence IEA]	Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IDA]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence ISS]; Combining with the biogenic amine serotonin, a neurotransmitter and hormone found in vertebrates, invertebrates and plants, to initiate a change in cell activity [goid 4993] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA];  [goid 5232] [evidence ISS];  [goid 5232] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645717-S	ILMN_267814	MYBPC3_PREDICTED	XM_001078025.1	XM_001078025.1		295929	109470312	XM_001078025.1	Mybpc3_predicted	XP_001078025.1	ILMN_1372161	0003940717	S	3735	TTCGCATGTTCTGCAAGCAGGGAGTATTGACCCTGGAGATCAGGAAGCCC				3q24	PREDICTED: Rattus norvegicus myosin binding protein C, cardiac (predicted) (Mybpc3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646830-A	ILMN_273131	AKR1D1	NM_138884.1	NM_138884.1		192242	20302062	NM_138884.1	Akr1d1	NP_620239.1	ILMN_1376409	0002900541	S	2852	CTGGCAGAGCCTCTCAGGAGAATCAGGCTCCTGTCAGCAGAGCACAAGTA	4	+	65005528-65005577	4q22	Rattus norvegicus aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) (Akr1d1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence IEA]; The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 6699] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6707] [evidence ISS]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence ISS]; The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 8207] [evidence IEA]; The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 8207] [evidence ISS]; The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence IEA]; The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics [goid 8209] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of bile acids, any of a group of steroid carboxylic acids occurring in bile [goid 30573] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]	Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: a 3-oxo-5-beta-steroid + acceptor = a 3-oxo-D4-steroid + reduced acceptor [goid 47568] [evidence IDA]; Catalysis of the reactions: (1) 5beta-cholestan-3-one + NADP+ = cholest-4-en-3-one + NADPH + H+ and (2) 17,21-dihydroxy-5beta-pregnane-3,11,20-trione + NADP+ = cortisone + NADPH + H+ [goid 47787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27707691-S	ILMN_264359	RGD1559951_PREDICTED	XM_228717.1	XM_228717.1		302528	27707691	XM_228717.1	RGD1559951_predicted	XP_228717.1	ILMN_1374441	0000460750	S	17	AAGTTTGGAATCTTGGGATCAACGGGACCTGCTATGGTGCCTCCCTCTGG	X	-	22880578-22880627	Xq13	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L37a (predicted) (RGD1559951_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653645-S	ILMN_276663	DIXDC1	NM_001037654.1	NM_001037654.1		363062	83320095	NM_001037654.1	Dixdc1	NP_001032743.1	ILMN_1370741	0006760121	S	1530	CACCATTGACAGCCTGGAGCAGGGAATCTCTAGCCTCATAGAGCGTCTGC	8	-	54035894-54035943	8q23	Rattus norvegicus DIX domain containing 1 (Dixdc1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47575871-S	ILMN_279515	LFNG	NM_133393.2	NM_133393.2		170905	47575871	NM_133393.2	Lfng	NP_596884.1	ILMN_1364471	0003990167	S	1537	GTGCTAGTGCCTACTGGAACCTTCCCTGTCAACTGAGCTGTACCCAGTGC	12	-	14497954-14498003	12q11	Rattus norvegicus LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase (Lfng), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle in the female germline [goid 7143] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The regionalization process by which embryonic segments are divided into compartments that will result in differences in cell differentiation [goid 7386] [evidence ISS]; The regionalization process by which embryonic segments are divided into compartments that will result in differences in cell differentiation [goid 7386] [evidence IEA]	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: transfers a beta-D-GlcNAc residue from UDP-D-GlcNAc to the fucose residue of a fucosylated protein acceptor [goid 33829] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61557050-S	ILMN_288411	RHOBTB2	NM_001013133.1	NM_001013133.1		306004	61557050	NM_001013133.1	Rhobtb2	NP_001013151.1	ILMN_1353915	0001690273	S	2478	TTTTGGAACAGTCCTTCATCACCGTCCTCCTCAGCAGCGGGCTCGGCATC	15	-	50166510-50166559	15p11	Rattus norvegicus Rho-related BTB domain containing 2 (Rhobtb2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]	MGC109268	MGC109268
Rattus norvegicus	RefSeq	GI_62717820-S	ILMN_50009	LOC503292	XM_578826.1	XM_578826.1		503292	62717820	XM_578826.1	LOC503292	XP_578826.1	ILMN_1373949	0004850603	S	807	GGAGCTGGAGAACTTGGAGTTGGGCTTTTGGCTATTGGTCTCCTGCCGGT					PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC503292), mRNA.					
Rattus norvegicus	RefSeq	GI_62643479	ILMN_267201	RGD1563943_PREDICTED	XR_007803.1	XR_007803.1		310429	109466691	XR_007803.1	RGD1563943_predicted		ILMN_1650132	0006660605	S	2040	AGACCCTCAAGATGAGGCGTATGACCGTCACCTAGCCCACCACCTGGTTT				2q31	PREDICTED: Rattus norvegicus similar to mcdc21 protein (predicted) (RGD1563943_predicted), mRNA.					
Rattus norvegicus	RefSeq	Rn.17986	ILMN_48005	RGD1565184_PREDICTED	XM_578205.2	XM_578205.2		502705	109469391	XM_578205.2	RGD1565184_predicted	XP_578205.2	ILMN_1530385	0006660452	S	742	ATCATATTGAATGGAGCACATAGGTCAGGAATGGAAAGTTAACGAATAAA	3|NW_047674.1	-	40770-40819		PREDICTED: Rattus norvegicus similar to VEPH isoform A (predicted) (RGD1565184_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662061-S	ILMN_59475	PCCA	XM_341383.2	XM_341383.2		54280	62662061	XM_341383.2	Pcca	XP_341384.2	ILMN_1372524	0002450072	S	1960	CCACACAGGGAGCCGAGGGGACTTGGAGATCATTTGGGGATGGCAGGAAA					PREDICTED: Rattus norvegicus propionyl-coenzyme A carboxylase, alpha polypeptide (Pcca), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 9062] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents [goid 9063] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA [goid 4658] [evidence IEA]; Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA [goid 4658] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions [goid 9374] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62641590-S	ILMN_47991	IFITM1_PREDICTED	XM_215117.4	XM_215117.4		293618	109459603	XM_215117.4	Ifitm1_predicted	XP_215117.2	ILMN_1370795	0002470288	S	163	GGACCCCACACCTCAACTTCTGCGACAACCACCACAATCAACATGCCTGC	1	+	201154546-201154595	1q41	PREDICTED: Rattus norvegicus interferon induced transmembrane protein 1 (predicted) (Ifitm1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_55926187-S	ILMN_296638	RBM4B	NM_001007014.2	NM_001007014.2		474154	55926187	NM_001007014.2	Rbm4b	NP_001007015.2	ILMN_1363667	0006900132	S	1420	CCTCTGAACAGCCCTAGGTAAGGATTATGCTGGCATCCCCCCTTTTCCTG	1	+	207373767-207373816	1q42	Rattus norvegicus RNA binding motif protein 4B (Rbm4b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC105881	MGC105881
Rattus norvegicus	RefSeq	GI_62649350	ILMN_286340	USP1	NM_001015015.1	NM_001015015.1		313387	62543524	NM_001015015.1	Usp1	NP_001015015.1	ILMN_1650395	0001660358	S	2568	CGGGACCCAGGAATCTGACAGGAGCAAGGAGTCCAGTGACCAAACAGGCA	5	+	119374913-119374962	5q33	Rattus norvegicus ubiquitin specific peptdiase 1 (Usp1), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]	MGC108773	MGC108773
Rattus norvegicus	RefSeq	GI_62662720-S	ILMN_276415	LONRF1_PREDICTED	XM_001066614.1	XM_001066614.1		306505	109504295	XM_001066614.1	Lonrf1_predicted	XP_001066614.1	ILMN_1355477	0002650672	S	2304	TGCCAGAGAGGGAAGAAAACCTCCAGGCAACACCCAACGGACCTGCATGG				16q12.2	PREDICTED: Rattus norvegicus LON peptidase N-terminal domain and ring finger 1 (predicted) (Lonrf1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647127-S	ILMN_51811	LOC362350	XM_342673.2	XM_342673.2		362350	62647127	XM_342673.2	LOC362350	XP_342674.2	ILMN_1360243	0002360594	S	564	CTACTGGGGAAGGCCACCCTGTATGCTGTGCTAGTCAGTGCCCTGGTGCT				4q22	PREDICTED: Rattus norvegicus similar to T-cell receptor beta-2 chain C region (LOC362350), mRNA.					
Rattus norvegicus	RefSeq	GI_24025626-S	ILMN_69398	CDIG2	NM_153624.1	NM_153624.1		266732	24025626	NM_153624.1	Cdig2	NP_705888.1	ILMN_1369148	0005860037	S	598	CCAACAGGAACTCTCGATGCTCTCTGCTGAGCCTCTCACAACGAAGACTC					Rattus norvegicus Cdig2 protein (Cdig2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus [goid 46686] [evidence IDA]	Combining with the hedgehog protein to initiate a change in cell activity [goid 8158] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639661-S	ILMN_286449	SPIB	NM_001024286.1	NM_001024286.1		499146	66730348	NM_001024286.1	Spib	NP_001019457.1	ILMN_1362013	0003610017	S	606	CCAGGTGCTGGCGTCTTCCAGTTCTCCTCCAAGCACAAGGAGTTGTTGGC	1	-	95006069-95006118	1q22	Rattus norvegicus Spi-B transcription factor (Spi-1/PU.1 related) (Spib), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758075-S	ILMN_279642	CD40LG	NM_053353.1	NM_053353.1		84349	16758075	NM_053353.1	Cd40lg	NP_445805.1	ILMN_1369246	0006370592	S	582	GAAGCCCAGCAGTGGGTCAGAGAGAATCTTACTCAGGGCAGCGAATACCC	X	+	141936982-141937031	Xq36	Rattus norvegicus CD40 ligand (Cd40lg), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of a B cell [goid 30183] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-12 production [goid 32735] [evidence IEA]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; The expansion of a B cell population by cell division. Follows B cell activation [goid 42100] [evidence ISS]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence ISS]; The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus [goid 45190] [evidence IEA]; The regulated release of immunoglobulins from a B cell or plasma cell, whose mechanism includes the use of alternate polyadenylylation signals to favor the biosynthesis of secreted forms of immunoglobulin over membrane-bound immunoglobulin [goid 48305] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51023] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells [goid 51023] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the tumor necrosis factor receptor [goid 5164] [evidence IEA]; Interacting selectively with CD40, a receptor found on the surface of all B-lymphocytes [goid 5174] [evidence ISS]	Tnfsf5	Tnfsf5
Rattus norvegicus	RefSeq	GI_62649965-I	ILMN_56663	ZFP100_PREDICTED	XM_575944.1	XM_575944.1		313666	62649965	XM_575944.1	Zfp100_predicted	XP_575944.1	ILMN_1376029	0004050280	S	2725	GTGGGGAGTTGGGGGTGGGGAACGGGTGCCTATACAGCTGACAGTTTAAT				5q36	PREDICTED: Rattus norvegicus zinc finger protein 100 (predicted) (Zfp100_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978664-S	ILMN_298648	CLPS	NM_013139.1	NM_013139.1		25680	6978664	NM_013139.1	Clps	NP_037271.1	ILMN_1354408	0002480601	S	223	GTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGACCCTCT	20	-	6802637-6802648:6803028-6803065	20p12	Rattus norvegicus colipase, pancreatic (Clps), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]; Increases the activity of an enzyme [goid 8047] [evidence IDA]; Increases the activity of an enzyme [goid 8047] [evidence IEA]	COLQ	COLQ
Rattus norvegicus	RefSeq	GI_62654880-S	ILMN_57044	LOC367229	XM_578778.1	XM_578778.1		367229	62654880	XM_578778.1	LOC367229	XP_578778.1	ILMN_1360323	0006370433	S	102	GCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAAC					PREDICTED: Rattus norvegicus similar to Makorin 1 (LOC367229), mRNA.					
Rattus norvegicus	RefSeq	GI_47577332-S	ILMN_268788	OLR41	NM_001000126.1	NM_001000126.1		293195	47577332	NM_001000126.1	Olr41	NP_001000126.1	ILMN_1357434	0006100368	S	666	CCTCCGTTCCATTTTCCGAATGCCTTCCCAGGATGCTCGCCACAAAACTC	1	+	160146549-160146598	1q32	Rattus norvegicus olfactory receptor 41 (Olr41), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr41	Olr41
Rattus norvegicus	RefSeq	GI_62664267-S	ILMN_283551	PCDHGA10	NM_001037135.1	NM_001037135.1		498849	80751170	NM_001037135.1	Pcdhga10	NP_001032212.1	ILMN_1361662	0000730286	S	2270	TGTTGGCACTCAAACTTCGGCGCTGGCACAAGTCTCACATGCTGCAGTCT	18	+	30658113-30658162	18p11	Rattus norvegicus protocadherin gamma subfamily A, 10 (Pcdhga10), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62639413-S	ILMN_53902	RGD1562792_PREDICTED	XM_214910.4	XM_214910.4		292813	109458588	XM_214910.4	RGD1562792_predicted	XP_214910.4	ILMN_1351468	0006290309	S	1567	GAGCGATGGGTATGGAATCCGAGCGATGGGCTTTGTGCATCCTGGGTGTG	1	-	88029564-88029613	1q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410004F06 (predicted) (RGD1562792_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642419-S	ILMN_63527	LOC361769	XM_342061.2	XM_342061.2		361769	62642419	XM_342061.2	LOC361769	XP_342062.2	ILMN_1354613	0004560075	S	1765	TGAGGGATGACTGCAAAGTACCACACCCATCACAGGCCCCGCCCACCTCG				1q54	PREDICTED: Rattus norvegicus similar to Su(fu) protein (LOC361769), mRNA.					
Rattus norvegicus	RefSeq	GI_62663466-S	ILMN_272461	BPHL	NM_001037206.1	NM_001037206.1		361239	81295384	NM_001037206.1	Bphl	NP_001032283.1	ILMN_1365599	0005690025	S	923	GGACCATGTCATTGCCTGTTACCTGGATGCTCGCAAACACCTTCCCTCGC	17	-	37143490-37143539	17p12	Rattus norvegicus biphenyl hydrolase-like (serine hydrolase) (Bphl), mRNA.			Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]	MGC125077	MGC125077
Rattus norvegicus	RefSeq	GI_62639112-I	ILMN_61232	PVRL2_PREDICTED	XM_574380.1	XM_574380.1		308417	62639112	XM_574380.1	Pvrl2_predicted	XP_574380.1	ILMN_1375236	0004850167	S	1520	AAAGACTCAGGTGTTTGGGAACGGGGGTCCTGTCTTCTGGAGGTCAGCGT				1q21	PREDICTED: Rattus norvegicus poliovirus receptor-related 2 (herpesvirus entry mediator B) (predicted) (Pvrl2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653638-S	ILMN_63218	BCDO2	XM_236220.4	XM_236220.4		315644	109483451	XM_236220.4	Bcdo2	XP_236220.3	ILMN_1351422	0000580577	S	1488	AGGCTGTTATCCTTCGGAGCCCGTTTTTGTTCCGGTGCCAGGAGCCGATG	8	-	53895299-53895348	8q23	PREDICTED: Rattus norvegicus beta-carotene 9', 10'-dioxygenase 2 (Bcdo2), mRNA.					
Rattus norvegicus	RefSeq	GI_62650318-S	ILMN_53652	MSH6_PREDICTED	XM_345633.2	XM_345633.2		366547	62650318	XM_345633.2	Msh6_predicted	XP_345634.2	ILMN_1374420	0000060022	S	4037	GGCTAGTGAAAGGCCGACTGTAAACAGTGAAGCTATCCATAGGTTGCTGG					PREDICTED: Rattus norvegicus mutS homolog 6 (E. coli) (predicted) (Msh6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11560066-S	ILMN_294262	GPR173	NM_022255.1	NM_022255.1		64021	11560066	NM_022255.1	Gpr173	NP_071591.1	ILMN_1361508	0006620279	S	978	TTGGATGAGCTTCGCCCAGGCTGCTGTCAACCCAATCGTCTGCTTCCTGC	X	-	41846402-41846451	Xq21	Rattus norvegicus G-protein coupled receptor 173 (Gpr173), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Sreb3	Sreb3
Rattus norvegicus	RefSeq	GI_62649067-S	ILMN_273929	TBC1D2_PREDICTED	XM_001066318.1	XM_001066318.1		313234	109476372	XM_001066318.1	Tbc1d2_predicted	XP_001066318.1	ILMN_1358670	0006350008	S	2703	CTACCAGTACCTGCGCTTCTTCACCAAGACCATCTGCGACAGCCGGAAGC				5q22	PREDICTED: Rattus norvegicus TBC1 domain family, member 2 (predicted) (Tbc1d2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655538-S	ILMN_276872	LPIN2_PREDICTED	XM_001055334.1	XM_001055334.1		316737	109487643	XM_001055334.1	Lpin2_predicted	XP_001055334.1	ILMN_1356179	0004200167	S	2852	CAGTTCCTTCTGCTACTGGAGAGACCCAATCCCTGACGTGGACCTGGATG				9q38	PREDICTED: Rattus norvegicus lipin 2 (predicted) (Lpin2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649674-S	ILMN_265832	RSPO1_PREDICTED	XM_001056937.1	XM_001056937.1		313589	109477210	XM_001056937.1	Rspo1_predicted	XP_001056937.1	ILMN_1356044	0005270068	S	700	AGGGGCAGAAGAGGAAGAAGGCGAGCCAGGGCCGGAGGGAGAATGCCAAT				5q36	PREDICTED: Rattus norvegicus R-spondin homolog (Xenopus laevis) (predicted) (Rspo1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657376	ILMN_275907	RHBDL6_PREDICTED	XM_001081746.1	XM_001081746.1		303690	109492269	XM_001081746.1	Rhbdl6_predicted	XP_001081746.1	ILMN_1650275	0003140400	S	2273	CCGGCTGGCACCGCATCTCCATCATCTTCATCCTCAGTGGTATTACAGGC				10q32.3	PREDICTED: Rattus norvegicus rhomboid, veinlet-like 6 (Drosophila) (predicted) (Rhbdl6_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661522-S	ILMN_267590	LOC681840	XM_001058666.1	XM_001058666.1		681840	109502464	XM_001058666.1	LOC681840	XP_001058666.1	ILMN_1357399	0001980068	S	329	CTGTGGAAAAAGCTATTCCCCACCTGGGCTATAATCCTCTGAACCACTCC					PREDICTED: Rattus norvegicus similar to granzyme N (LOC681840), mRNA.					
Rattus norvegicus	RefSeq	GI_47577322-S	ILMN_279292	OLR715	NM_001000623.1	NM_001000623.1		404815	47577322	NM_001000623.1	Olr715	NP_001000623.1	ILMN_1361831	0003990451	S	665	CTCTTAAGGCTCACAGTCAGGAAGGGAGACGCAAAGCCCTGTCTACCTGC	3	-	74147063-74147112	3q24	Rattus norvegicus olfactory receptor 715 (Olr715), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr715	Olr715
Rattus norvegicus	RefSeq	GI_7549766-S	ILMN_302449	IL10	NM_012854.1	NM_012854.1		25325	7549766	NM_012854.1	Il10	NP_036986.1	ILMN_1369848	0005270019	S	1009	CCTGGGAGAGTTGTGAAGACTCTCATGGGTCTTGGGAAGAGAAACCAGGT	13	+	43958052-43958101	13q13	Rattus norvegicus interleukin 10 (Il10), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]	Any process that stops, prevents, or reduces the rate of production of a cytokine [goid 1818] [evidence IMP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin [goid 2237] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion during immune response [goid 2740] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion during immune response [goid 2740] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IMP]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid dendritic cell activation [goid 30886] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of myeloid dendritic cell activation [goid 30886] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-12 production [goid 32695] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-12 production [goid 32695] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence IEA]; Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production [goid 32715] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32800] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 32800] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42536] [evidence IDA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45019] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II [goid 45348] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50715] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the inflammatory response [goid 50728] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IDA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-10 receptor [goid 5141] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	IL10X	IL10X
Rattus norvegicus	RefSeq	GI_32401460-S	ILMN_295455	GPR119	NM_181770.1	NM_181770.1		302813	32401460	NM_181770.1	Gpr119	NP_861435.1	ILMN_1362417	0004120068	S	1332	GGTAACTGGCCAAACTGAGCAGACACCACTGAAACGAGCAAACATGAGTG	X	-	135080188-135080237	Xq35	Rattus norvegicus G protein-coupled receptor 119 (Gpr119), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IEA]	Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence ISS]; Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity [goid 1619] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_13929047-S	ILMN_275869	SLC13A2	NM_031746.1	NM_031746.1		65202	13929047	NM_031746.1	Slc13a2	NP_113934.1	ILMN_1373589	0005290403	S	2075	TGTATGCATGGTAACAGCACCTGCACTCTGGCTCCCAGCTAGGCCTCCAG	10	-	64504093-64504142	10q25	Rattus norvegicus solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 (Slc13a2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Nadc1	Nadc1
Rattus norvegicus	RefSeq	GI_47576684	ILMN_275057	OLR1705	NM_001000887.1	NM_001000887.1		405188	47576684	NM_001000887.1	Olr1705	NP_001000887.1	ILMN_1649987	0000940020	S	422	GTACTTGGGCTGTGGCAGCTGTGTGGCTATGTGGAAGCATCCCAGGAACA	20	+	793041-793090	20p12	Rattus norvegicus olfactory receptor 1705 (Olr1705), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1705	Olr1705
Rattus norvegicus	RefSeq	GI_34869124-S	ILMN_274206	SPETEX-2D	NM_001011701.1	NM_001011701.1		364260	58743350	NM_001011701.1	Spetex-2D	NP_001011701.1	ILMN_1361969	0006450609	S	512	GGTTCTGTGAGGAGGCCAGCAAGACCATCTACACTGCAGATATTGAATCC	15	+	5924955-5925004	15p16	Rattus norvegicus Spetex-2D protein (Spetex-2D), mRNA.					
Rattus norvegicus	RefSeq	GI_58743350-S	ILMN_274206	SPETEX-2D	NM_001011701.1	NM_001011701.1		364260	58743350	NM_001011701.1	Spetex-2D	NP_001011701.1	ILMN_1372156	0006510739	S	363	GCAAGAGAACAATTCCTACCGCATCAGAAACTTCCACCTCCTGAATGAAC	15	+	5924364-5924384:5924827-5924855	15p16	Rattus norvegicus Spetex-2D protein (Spetex-2D), mRNA.					
Rattus norvegicus	RefSeq	GI_16758313-S	ILMN_290553	OPN1MW	NM_053548.1	NM_053548.1		89810	16758313	NM_053548.1	Opn1mw	NP_446000.1	ILMN_1367704	0002060368	S	714	GCTGGCCATCCGAGCAGTGGCAAAGCAACAGAAAGAATCTGAGTCCACCC	X	+	160105675-160105690:160108942-160108975	Xq37	Rattus norvegicus opsin 1 (cone pigments), medium-wave-sensitive (Opn1mw), mRNA.	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation [goid 9881] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_8393642	ILMN_64151	KCNAB1	NM_017303.2	NM_017303.2		29737	59709457	NM_017303.2	Kcnab1	NP_058999.1	ILMN_1650460	0001400711	S	1682	TGGCATGGTGCCTGAGAAACGAGGGTGTGAGCTCTGTGCTGCTGGGATCA	2	+	155138182-155138184:155141139-155141185	2q31	Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, beta member 1 (Kcnab1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]	MGC105463; KvBeta3	MGC105463; KvBeta3
Rattus norvegicus	RefSeq	GI_62662501-S	ILMN_55129	LOC498615	XM_579838.1	XM_579838.1		498615	62662501	XM_579838.1	LOC498615	XP_579838.1	ILMN_1350950	0005860494	S	743	CTGGAGGCTGGAGCTGAAGCAGAAACCATGGAGGGACACTGCTGTTTGGC					PREDICTED: Rattus norvegicus LOC498615 (LOC498615), mRNA.					
Rattus norvegicus	RefSeq	GI_62641616-I	ILMN_49419	RGD1307826_PREDICTED	XM_219484.3	XM_219484.3		309111	62641616	XM_219484.3	RGD1307826_predicted	XP_219484.2	ILMN_1375469	0004280619	S	644	GGGTCGCCCATCTTCGGAGGAGAAATCACCTTTCTATGTGTCCTTCCTGG				1q41	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300006L01 (predicted) (RGD1307826_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41386756-S	ILMN_272072	ADM2	NM_201426.1	NM_201426.1		399475	41386756	NM_201426.1	Adm2	NP_958829.1	ILMN_1361575	0003130647	S	756	TGAGGATCTAGGCTGTAGATTCAGCACCAACAGGGGCCTGTGCATCCCAG	7	+	127621532-127621581	7q34	Rattus norvegicus adrenomedullin 2 (Adm2), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP [goid 7189] [evidence IDA]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IMP]; Behavior associated with the intake of food [goid 7631] [evidence IMP]; The process by which the force of blood traveling through the circulatory system is decreased [goid 45776] [evidence IMP]	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]	Imd	Imd
Rattus norvegicus	RefSeq	GI_62664418-S	ILMN_50135	SNCAIP_PREDICTED	XM_225768.3	XM_225768.3		307309	62664418	XM_225768.3	Sncaip_predicted	XP_225768.3	ILMN_1349663	0007050139	S	3073	GGAAGCAGAAAGGAAAAATGCCTTCCAGACTCCTAGGGCAACTGGGAACG				18q11	PREDICTED: Rattus norvegicus synuclein, alpha interacting protein (synphilin) (predicted) (Sncaip_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666688-S	ILMN_67107	RGD1563286_PREDICTED	XM_346287.3	XM_346287.3		367763	109510564	XM_346287.3	RGD1563286_predicted	XP_346288.2	ILMN_1355557	0001980441	S	1134	GACCATGACCCACGGGAAGCTGGTCATCCTGTTCTCATACATGGCTGGGC	X	-	35716871-35716920	Xq14	PREDICTED: Rattus norvegicus similar to Expressed sequence AW547186 (predicted) (RGD1563286_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662142-S	ILMN_281588	RAI17_PREDICTED	XM_001054961.1	XM_001054961.1		361103	109503665	XM_001054961.1	Rai17_predicted	XP_001054961.1	ILMN_1358701	0001660546	S	3786	TTTGCACGTACCACACCCCAGCAGCCAGGCAGGGCCTCCATTACATCACA				16p16	PREDICTED: Rattus norvegicus retinoic acid induced 17 (predicted) (Rai17_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576064-S	ILMN_286349	OLR1417	NM_001001002.1	NM_001001002.1		405368	47576064	NM_001001002.1	Olr1417	NP_001001002.1	ILMN_1362010	0005570541	S	674	GGATGAACTCAACAGAGGGCAGGAAAAAGGCTCTTGCAACCTGTTCCTCC	10	-	44225335-44225384	10q22	Rattus norvegicus olfactory receptor 1417 (Olr1417), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1417	Olr1417
Rattus norvegicus	RefSeq	GI_9506812-S	ILMN_290865	INPP5D	NM_019311.1	NM_019311.1		54259	9506812	NM_019311.1	Inpp5d	NP_062184.1	ILMN_1350985	0005570451	S	4632	TGTACTGAGGAAGAATATCCACCATCGTCCCCAGTGACTGAGCTCTCTGG	9	+	86681947-86681996	9q35	Rattus norvegicus inositol polyphosphate-5-phosphatase D (Inpp5d), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; The control of viability and duration in the adult phase of the life-cycle [goid 8340] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction [goid 9968] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of granulocyte differentiation [goid 30853] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of B cell proliferation [goid 30889] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45409] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of B cell differentiation [goid 45579] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of lymphocyte differentiation [goid 45621] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation [goid 45648] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of monocyte differentiation [goid 45656] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neutrophil differentiation [goid 45659] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast differentiation [goid 45671] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50777] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of B cell activation [goid 50869] [evidence ISS]	Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]; Catalysis of the removal of a phosphate group from the carbon-5 position of D-myo-inositol 4,5-bisphosphate [goid 30487] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647371-S	ILMN_294373	RGD1311080_PREDICTED	XR_008378.1	XR_008378.1		312401	109473626	XR_008378.1	RGD1311080_predicted		ILMN_1372277	0001090075	S	2075	ACCTGCAGAAAGCAGTGACGACAGAGACAATCAGAGATCTGCAACCTGGC				4q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930038C07 (predicted) (RGD1311080_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661964-S	ILMN_48491	PBK_PREDICTED	XM_224300.4	XM_224300.4		290326	109501820	XM_224300.4	Pbk_predicted	XP_224300.4	ILMN_1374858	0004760167	S	945	AGATCGCCCATCTGCTGCACACATCGTTGAAGCTTTGGAACTAGATGGCC	15	+	45237450-45237499	15p12	PREDICTED: Rattus norvegicus PDZ binding kinase (predicted) (Pbk_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_53850615-S	ILMN_286856	MORN1	NM_001005544.1	NM_001005544.1		298676	53850615	NM_001005544.1	Morn1	NP_001005544.1	ILMN_1371105	0005860435	S	1524	CCTCTATTCCTAAACAATCTGAGAGCTGGGGACGGCCCTGTGAGCCCCAC	5	+	171944882-171944931	5q36	Rattus norvegicus MORN repeat containing 1 (Morn1), mRNA.		The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine [goid 6306] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule [goid 8170] [evidence IEA]	MGC95274	MGC95274
Rattus norvegicus	RefSeq	GI_62650738-S	ILMN_52026	LOC500658	XM_576036.1	XM_576036.1		500658	62650738	XM_576036.1	LOC500658	XP_576036.1	ILMN_1361643	0003870154	S	93	CCGGATGCTTCTGCGAGCATCCTGGCTGGCATTGATGATGTTGCAAAGAA				6q24	PREDICTED: Rattus norvegicus similar to Hmgb1-prov protein (LOC500658), mRNA.					
Rattus norvegicus	RefSeq	GI_62653067-S	ILMN_55376	RGD1305671_PREDICTED	XM_235656.4	XM_235656.4		300231	109481281	XM_235656.4	RGD1305671_predicted	XP_235656.3	ILMN_1367698	0003710390	S	4507	ATGTGGTGGGTGCGCTGGATGAGACACTGGAGCTGAGGGGATTGCGATAC	7	+	138955847-138955896	7q36	PREDICTED: Rattus norvegicus similar to expressed sequence AI317237 (predicted) (RGD1305671_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34863335-S	ILMN_61970	LOC366576	XM_345647.1	XM_345647.1		366576	34863335	XM_345647.1	LOC366576	XP_345648.1	ILMN_1349579	0005290041	S	62	CCTTGAGGAGGGAGCTCTGGAAATTGGAGGCAACAGGAGACTGACTCACT					PREDICTED: Rattus norvegicus similar to Histone aminotransferase 1 (predicted) (LOC366576), mRNA.					
Rattus norvegicus	RefSeq	GI_16418480-S	ILMN_267778	NR1I2	NM_052980.1	NM_052980.1		84385	16418480	NM_052980.1	Nr1i2	NP_443212.1	ILMN_1374392	0002350520	S	1613	TGCCTCTGTCTGCAGCTGGCTAGCATTTCTCAGGAAAAGGACACAGGAGC	11	+	64276007-64276056	11q21	Rattus norvegicus nuclear receptor subfamily 1, group I, member 2 (Nr1i2), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; A ligand-dependent receptor found in the nucleus of the cell [goid 4879] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	PXR; MGC108643	PXR; MGC108643
Rattus norvegicus	RefSeq	GI_46485411-S	ILMN_288293	ABCA7	NM_207598.1	NM_207598.1		299609	46485411	NM_207598.1	Abca7	NP_997481.1	ILMN_1368329	0002900435	S	6377	CCAAAGACCAGGGGGAAGAGGAGGAAGGCAGTGGACAGGAGACTGAAACG				7q11	Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 7 (Abca7), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IEA]; The directed movement of a phospholipid out of a cell or organelle [goid 33700] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of phospholipids into, out of, within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester [goid 5548] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62654152-S	ILMN_65862	LOC367149	XM_576450.1	XM_576450.1		367149	62654152	XM_576450.1	LOC367149	XP_576450.1	ILMN_1373621	0005360537	S	62	GACAGGGGCCTTTTTGCTTCAGGGGATCCAACTTCCGGAAACCTCCCCCT				8q31	PREDICTED: Rattus norvegicus similar to BAX protein, cytoplasmic isoform delta (LOC367149), mRNA.					
Rattus norvegicus	RefSeq	GI_47576042-S	ILMN_298129	OLR1431	NM_001000778.1	NM_001000778.1		405054	47576042	NM_001000778.1	Olr1431	NP_001000778.1	ILMN_1352690	0006370593	S	869	GCCTGAGGAACAAGGAAGTGCAGGGTGCCATGAGGAGAGTGATGGAGAGA	10	+	44461872-44461921	10q22	Rattus norvegicus olfactory receptor 1431 (Olr1431), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1431	Olr1431
Rattus norvegicus	RefSeq	GI_62667412-S	ILMN_267158	LOC685593	XM_001064447.1	XM_001064447.1		685593	109511227	XM_001064447.1	LOC685593	XP_001064447.1	ILMN_1350472	0004200161	S	327	CGAGATAAAAGAACAACATCCAAACTGGACTGTGGCGCAGGTGGCCAAGG	X	-	139770086-139770135	Xq36	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22 (LOC685593), mRNA.	The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576700-S	ILMN_290378	OLR845	NM_001000404.1	NM_001000404.1		298046	47576700	NM_001000404.1	Olr845	NP_001000404.1	ILMN_1364773	0000130592	S	284	CTGGTTGTGCGGTGCAGATGTTCGTTGGATTTGCAATGGGCTCAACAGAG	5	-	70118123-70118172	5q24	Rattus norvegicus olfactory receptor 845 (Olr845), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr845; ratchr5-70123569-70122616	Olr845; ratchr5-70123569-70122616
Rattus norvegicus	RefSeq	GI_55742880-S	ILMN_290571	MXRA8	NM_001007002.1	NM_001007002.1		313770	55742880	NM_001007002.1	Mxra8	NP_001007003.1	ILMN_1370549	0001050079	S	2031	CCTTTCTGTCCAATGCTCTCCAAGAGCCACACCAACAGTTACTGGGGACC	5	+	172702362-172702411	5q36	Rattus norvegicus matrix-remodelling associated 8 (Mxra8), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			1200013a08rik; MGC95024	1200013a08rik; MGC95024
Rattus norvegicus	RefSeq	GI_62667128-S	ILMN_282729	SH3BGRL_PREDICTED	XM_001060518.1	XM_001060518.1		302363	109512217	XM_001060518.1	Sh3bgrl_predicted	XP_001060518.1	ILMN_1370664	0000430632	S	1053	AGGCTTGACAGCACCACCTGGTTCAAAGGAAGCAGAAGCCCAGGCAAAGC				Xq31	PREDICTED: Rattus norvegicus SH3-binding domain glutamic acid-rich protein like (predicted) (Sh3bgrl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655439	ILMN_69608	LOC501191	XM_576619.1	XM_576619.1		501191	62655439	XM_576619.1	LOC501191	XP_576619.1	ILMN_1650258	0003170500	S	423	GGCTAAGATCAAAATCTCAGGTGACAGCAAATGCTGGCGAGGATGTGGAG					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC501191), mRNA.					
Rattus norvegicus	RefSeq	GI_6978704-S	ILMN_301138	CPT2	NM_012930.1	NM_012930.1		25413	6978704	NM_012930.1	Cpt2	NP_037062.1	ILMN_1354686	0000060605	S	2156	TGCAGGCTGAGCTGGAAGAGCCCAACTGAAGGTAGTGAGAGGTCGCAGCT	5	-	129007775-129007824	5q35	Rattus norvegicus carnitine palmitoyltransferase 2 (Cpt2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence TAS]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The transfer of acyl groups to and from acyl-CoA molecules to form O-acylcarnitine, which can exchange across the mitochondrial inner membrane with unacylated carnitine [goid 6853] [evidence ISS]; The directed movement of long-chain fatty acids into, out of, within or between cells. A long-chain fatty acid is an aliphatic compound with a terminal carboxyl group and with a chain length greater than C12 [goid 15909] [evidence TAS]; Any process that modulates the frequency, rate or extent of fatty acid oxidation [goid 46320] [evidence ISS]	Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IMP]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IEA]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence IDA]; Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine [goid 4095] [evidence ISS]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	CPTII	CPTII
Rattus norvegicus	RefSeq	GI_62648425-S	ILMN_67939	LOC502909	XM_578411.1	XM_578411.1		502909	62648425	XM_578411.1	LOC502909	XP_578411.1	ILMN_1362946	0004670170	S	475	TGCAACAGAGGAGAAGAAAGACTAGAAGGAGGAGTCAAGCGCCCCACCCC					PREDICTED: Rattus norvegicus similar to acidic ribosomal phosphoprotein P2 (LOC502909), mRNA.					
Rattus norvegicus	RefSeq	GI_47577400-S	ILMN_267838	OLR6	NM_001000539.1	NM_001000539.1		365175	47577400	NM_001000539.1	Olr6	NP_001000539.1	ILMN_1350595	0003290014	S	614	TTTCAGCCATTGTCATCCTTTGGGGTTGCTTCCTCACAACTATGGCCTCC	1	+	65792260-65792309	1q12	Rattus norvegicus olfactory receptor 6 (Olr6), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr6	Olr6
Rattus norvegicus	RefSeq	GI_6981479-S	ILMN_298549	ROS1	NM_012874.1	NM_012874.1		25346	6981479	NM_012874.1	Ros1	NP_037006.1	ILMN_1369937	0001690021	S	7712	CTGGCAATCTTACTAGGTTCATGCAAGGATGTGAGTGGGGGAGGGGCCGG	20	-	30755241-30755290	20q11	Rattus norvegicus Ros1 proto-oncogene (Ros1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	ROS1C	ROS1C
Rattus norvegicus	RefSeq	GI_56090382-S	ILMN_291401	TMEM43	NM_001007745.1	NM_001007745.1		362401	56090382	NM_001007745.1	Tmem43	NP_001007746.1	ILMN_1368080	0000110341	S	2608	GTTCAGTGCACGCTGGAACAATCCCATCGAAACTCCCCAGATGGTTTGGG	4	+	125671577-125671626	4q34	Rattus norvegicus transmembrane protein 43 (Tmem43), mRNA.	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94413	MGC94413
Rattus norvegicus	RefSeq	GI_16758119-S	ILMN_302808	IL12A	NM_053390.1	NM_053390.1		84405	16758119	NM_053390.1	Il12a	NP_445842.1	ILMN_1371613	0004120722	S	723	CTTCAGCTCCTGTAGGAATCTGTAACCCCAAAGGTGGCACGGCTGCCTCA	2	+	158717619-158717668	2q31	Rattus norvegicus interleukin 12a (Il12a), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence ISS]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence ISS]; A protein complex that is composed of an interleukin-12 alpha and an interleukin-12 beta subunit and is secreted into the extracellular space [goid 43514] [evidence IEA]	Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity [goid 1916] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target [goid 2860] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target [goid 2860] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm [goid 10224] [evidence IEA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon [goid 32729] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of natural killer cell activation [goid 32816] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer cell activation [goid 32816] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of smooth muscle cell apoptosis [goid 34393] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat4 protein [goid 42520] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat4 protein [goid 42520] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence IEA]	Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IDA]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; Interacting selectively with the interleukin-12 receptor [goid 5143] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with the beta subunit of interleukin-12 [goid 42163] [evidence ISS]; Interacting selectively with the beta subunit of interleukin-12 [goid 42163] [evidence IEA]; Interacting selectively with interleukin-27 [goid 45513] [evidence ISS]; Interacting selectively with interleukin-27 [goid 45513] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62658183-S	ILMN_54739	LOC363828	XM_344042.2	XM_344042.2		363828	62658183	XM_344042.2	LOC363828	XP_344043.2	ILMN_1368813	0001780685	S	512	CCCTGGTGTTATGACAGTGGTCTGGAAGGCAGATGGTACCCCTATCACTC					PREDICTED: Rattus norvegicus similar to immunoglobulin light chain variable region (LOC363828), mRNA.					
Rattus norvegicus	RefSeq	GI_62657140-S	ILMN_68653	LOC287734	XM_213493.3	XM_213493.3		287734	62657140	XM_213493.3	LOC287734	XP_213493.3	ILMN_1374021	0005270402	S	2641	TCTGTCCGTGGTCCCCTCCATAGCCTTCTCACTAGAGGGGGAAAGAGAAG				10q32.1	PREDICTED: Rattus norvegicus similar to CG13379-PA (predicted) (LOC287734), mRNA.					
Rattus norvegicus	RefSeq	GI_16758721-S	ILMN_278931	SCG3	NM_053856.1	NM_053856.1		116635	16758721	NM_053856.1	Scg3	NP_446308.1	ILMN_1367903	0003870156	S	1701	GCAGCCTGTGAAAACGGCAGGCAACCTGAGCCTTCCAACTGTTCCAGCAA	8	-	80468192-80468241	8q24	Rattus norvegicus secretogranin III (Scg3), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence TAS]			SgIII	SgIII
Rattus norvegicus	RefSeq	GI_27707377-S	ILMN_61919	SNRPE_PREDICTED	XM_341120.3	XM_341120.3		360844	109511237	XM_341120.3	Snrpe_predicted	XP_341121.2	ILMN_1359898	0002940133	S	56	GCCTACTGCGGCCAGGGCCAGAAGGTGCAGAAGGTGATGGTGCAGCCCAT	X	+	140365601-140365650	Xq36	PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein E (predicted) (Snrpe_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667425-S	ILMN_61919	SNRPE_PREDICTED	XM_341120.3	XM_341120.3		360844	109511237	XM_341120.3	Snrpe_predicted	XP_341121.2	ILMN_1374690	0006620333	S	330	AGCAATGGTCAAGCATGGGAGAGGTTGAGAAGGGGGTTCAGGGGCCAGCT	X	+	140365875-140365876:140365877-140365924	Xq36	PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein E (predicted) (Snrpe_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648046-S	ILMN_49690	LOC500296	XM_580056.1	XM_580056.1		500296	62648046	XM_580056.1	LOC500296	XP_580056.1	ILMN_1353389	0004070427	S	933	CAAGGACGGGAAGATGGGACCGGAGAAGCCGAAGCAAGGGATCTCATAGC					PREDICTED: Rattus norvegicus LOC500296 (LOC500296), mRNA.					
Rattus norvegicus	RefSeq	GI_62661716-S	ILMN_57331	DOK2_PREDICTED	XM_224344.3	XM_224344.3		290361	109501868	XM_224344.3	Dok2_predicted	XP_224344.3	ILMN_1369416	0006510500	S	1673	GGCCTTCTGCCTATAGATGTTCTGACCCTTGGACAACCCTGGCTTCAGGG	15	+	51174216-51174265	15p11	PREDICTED: Rattus norvegicus docking protein 2 (predicted) (Dok2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718558	ILMN_278391	CYP2C37	XM_001063361.1	XM_001063361.1		29296	109513754	XM_001063361.1	Cyp2c37	XP_001063361.1	ILMN_1650905	0006590377	S	2275	CCAGTTTCTGGAGTCACTGCTCACATATATCTGCACTTCCCTATTCTCTG	Un|NW_047916.1	-	37040-37089		PREDICTED: Rattus norvegicus cytochrome P450, 2c37 (Cyp2c37), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665261-S	ILMN_269162	RGD1306674_PREDICTED	XM_001077077.1	XM_001077077.1		307834	109508863	XM_001077077.1	RGD1306674_predicted	XP_001077077.1	ILMN_1374756	0002120215	S	1367	CACCCTCTGCATTTGGGAACAGGATGGGGTCAGGAGGGACCTGGCTCAAT				19q12	PREDICTED: Rattus norvegicus similar to 4930566A11Rik protein (predicted) (RGD1306674_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34878566-S	ILMN_67522	LOC289715	XM_212752.2	XM_212752.2		289715	34878566	XM_212752.2	LOC289715	XP_212752.2	ILMN_1349521	0006650128	S	168	AACACTACTGGGACTGGTCGGATGAGGCACCTAAAGATTGTCTCCTGAAG				14q21	PREDICTED: Rattus norvegicus similar to ribosomal protein L37 (LOC289715), mRNA.					
Rattus norvegicus	RefSeq	GI_62661788-S	ILMN_271006	RGD1306441	XM_001075379.1	XM_001075379.1		290425	109502828	XM_001075379.1	RGD1306441	XP_001075379.1	ILMN_1352694	0000130433	S	1178	AGCAGGCTCTCAGGGAGGAGAACAAGGCGCTGAGAGAAGAGCACGGGGCT				15q21	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921530L21 (RGD1306441), mRNA.					
Rattus norvegicus	RefSeq	GI_47577966-S	ILMN_282974	OLR110	NM_001000743.1	NM_001000743.1		405007	47577966	NM_001000743.1	Olr110	NP_001000743.1	ILMN_1368792	0007100292	S	707	CTCGAGATGCCCGGCTCAAGGCTCTAGGTACTTGTGGTTCCCATGTTTGT	1	+	161287187-161287236	1q32	Rattus norvegicus olfactory receptor 110 (Olr110), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr110	Olr110
Rattus norvegicus	RefSeq	GI_62718516-S	ILMN_65591	LOC501413	XM_576825.1	XM_576825.1		501413	62718516	XM_576825.1	LOC501413	XP_576825.1	ILMN_1356037	0005900091	S	316	CTGGTGCTGCGGAGAAGTCCAATGTTAAAATCCAGAGCACTCCAGTCAAG					PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC501413), mRNA.					
Rattus norvegicus	RefSeq	GI_62647572-S	ILMN_50012	LOC502824	XM_578324.1	XM_578324.1		502824	62647572	XM_578324.1	LOC502824	XP_578324.1	ILMN_1370091	0005420671	S	80	GTACCAGCAGAAGCCAGGCCATCCTCCTAGACTCCTGATCTCTTTTGCAT					PREDICTED: Rattus norvegicus similar to Ig kappa chain precursor (LOC502824), mRNA.					
Rattus norvegicus	RefSeq	GI_62659261-S	ILMN_267887	RGD1564952_PREDICTED	XR_007587.1	XR_007587.1		304761	109498579	XR_007587.1	RGD1564952_predicted		ILMN_1372225	0002230059	S	3677	GCTGTGTGGCGTGAATGCACAGGAGCTCTTTCTGCGGATGAGAGATGCCC				13q12	PREDICTED: Rattus norvegicus similar to zinc finger, RAN-binding domain containing 3 (predicted) (RGD1564952_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576992-S	ILMN_284761	OLR786	NM_001000916.1	NM_001000916.1		405231	47576992	NM_001000916.1	Olr786	NP_001000916.1	ILMN_1360437	0000770446	S	284	GAGGCTGTGTTATTCAAATCTTCTTCAACCAGGCAATTGGCGGTGCCGAG	3	+	97634256-97634305	3q34	Rattus norvegicus olfactory receptor 786 (Olr786), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr786	Olr786
Rattus norvegicus	RefSeq	GI_47576166-S	ILMN_284768	OLR1365	NM_214824.1	NM_214824.1		287081	47576166	NM_214824.1	Olr1365	NP_999989.1	ILMN_1350312	0004150008	S	798	CTTAGCTGGGAGGGACATGGCAGCTGCTGTGATGTACACAGTGGTGACCC	10	-	12300296-12300345	10q12	Rattus norvegicus olfactory receptor 1365 (Olr1365), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1365	Olr1365
Rattus norvegicus	RefSeq	GI_34854265-S	ILMN_63113	LOC362130	XM_347030.1	XM_347030.1		362130	34854265	XM_347030.1	LOC362130	XP_347031.1	ILMN_1370084	0005910575	S	467	ACCGTTTGGCTTTGCTCAGACCCCGCGGTGCCCTCAAACACCTAATCCAG					PREDICTED: Rattus norvegicus hypothetical LOC362130 (LOC362130), mRNA.					
Rattus norvegicus	RefSeq	GI_62643662-S	ILMN_58739	RGD1562174_PREDICTED	XM_227287.4	XM_227287.4		310538	109464966	XM_227287.4	RGD1562174_predicted	XP_227287.4	ILMN_1352763	0005050528	S	3323	TGGCCACAAGTCAGAGGAAAGTGACGGACGCCATGAAGCTGGGCCAGGAT	2	-	170872321-170872370	2q32	PREDICTED: Rattus norvegicus similar to mKIAA1450 protein (predicted) (RGD1562174_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664216-S	ILMN_267597	RGD1564727_PREDICTED	XM_344658.2	XM_344658.2		364833	62664216	XM_344658.2	RGD1564727_predicted	XP_344659.2	ILMN_1357061	0003190020	S	1	ATGGACTCTGGAAATAGCATTATCCTTGCTGTGCCCATCTATGAAGACTA	18	-	23902187-23902236	18p12	PREDICTED: Rattus norvegicus similar to actin (predicted) (RGD1564727_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638456-S	ILMN_50337	LOC361469	XM_346976.2	XM_346976.2		361469	62638456	XM_346976.2	LOC361469	XP_346977.1	ILMN_1363302	0005220451	S	170	GACTTCGCATCCCAGATGAAGGAACTCTGGTTGGAAAAATCAATGCCATC					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC361469), mRNA.					
Rattus norvegicus	RefSeq	GI_62650030-S	ILMN_60077	LOC366505	XM_345604.2	XM_345604.2		366505	62650030	XM_345604.2	LOC366505	XP_345605.2	ILMN_1355778	0000610168	S	453	TGCACGCCGGGAGGTCTCTGAGGGGATGAGGACGGACGTTTGAAGAAAGT					PREDICTED: Rattus norvegicus similar to Cc2-27 (predicted) (LOC366505), mRNA.					
Rattus norvegicus	RefSeq	GI_62661812	ILMN_275272	UCHL3	XM_001076488.1	XM_001076488.1		114094	109502876	XM_001076488.1	Uchl3	XP_001076488.1	ILMN_1650188	0003440273	S	371	CCACGCCATCGCGAACAACAAAGACAAGATGCACTTTGAATCAGGGTCAG				3q42	PREDICTED: Rattus norvegicus ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) (Uchl3), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]	Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62653292-S	ILMN_270370	LOC500954	XM_001077057.1	XM_001077057.1		500954	109484345	XM_001077057.1	LOC500954	XP_001077057.1	ILMN_1362849	0000380577	S	440	GCTGTGTCCTGAGGGAGAGCTGGTGTCTGCTGTTAGGTACTGCTCCTGAG				8q13	PREDICTED: Rattus norvegicus Ubiquitin-Like 5 Protein (LOC500954), mRNA.					
Rattus norvegicus	RefSeq	GI_55925609-S	ILMN_289084	ITPR1	NM_001007235.1	NM_001007235.1		25262	55925609	NM_001007235.1	Itpr1	NP_001007236.1	ILMN_1362286	0004280600	S	9539	CCATATAAGGCAAAGTAGGAGCTGTCCCCTTAGGATGCATAGCTGCCCCC	4	+	144029835-144029884	4q41	Rattus norvegicus inositol 1,4,5-triphosphate receptor 1 (Itpr1), mRNA.	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin [goid 5955] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle fiber; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage [goid 16529] [evidence ISS]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence IDA]; The lipid bilayer surrounding the platelet dense tubular network [goid 31095] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system that can be controlled at will [goid 50882] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]	Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Combining with inositol-1,4,5-triphosphate to initiate a change in cell activity [goid 8095] [evidence ISS]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA];  [goid 5220] [evidence IEA]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	I145TR; InsP3R1	I145TR; InsP3R1
Rattus norvegicus	RefSeq	GI_62647181-S	ILMN_276334	RGD1563929_PREDICTED	XM_001073119.1	XM_001073119.1		502759	109473425	XM_001073119.1	RGD1563929_predicted	XP_001073119.1	ILMN_1369518	0004150168	S	1534	CTAGGGGCAGAGGGCTATTTTCCTGACTTGTTTCCCACTCCATGTGCTCC				4q23	PREDICTED: Rattus norvegicus similar to newborn ovary homeodomain protein (predicted) (RGD1563929_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62660945-S	ILMN_274957	RGD1561672_PREDICTED	XM_001065540.1	XM_001065540.1		305610	109501131	XM_001065540.1	RGD1561672_predicted	XP_001065540.1	ILMN_1366533	0004210706	S	6445	TGGTTGGCTCCTCGGGCTGGTGTATTTGTGTGGCGATGTCTGTAAACACC				14q22	PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1561672_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62647784-S	ILMN_277160	TXNRD3_PREDICTED	XM_001075644.1	XM_001075644.1		297437	109473901	XM_001075644.1	Txnrd3_predicted	XP_001075644.1	ILMN_1362806	0002450010	S	3229	CAGAAACCTGACTCATACCGCACTCCTTGCACAGCTTCTAGGGGAGAACC				4q34	PREDICTED: Rattus norvegicus thioredoxin reductase 3 (predicted) (Txnrd3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62653091-S	ILMN_265385	LOC683720	XR_009563.1	XR_009563.1		683720	109482982	XR_009563.1	LOC683720		ILMN_1361669	0005340537	S	1792	CTCTGAGTTCAGGGCAAGCTGGAGGAGGGAGAAGGGGTTGCCAGAGATCT					PREDICTED: Rattus norvegicus similar to keratin 6L (LOC683720), mRNA.					
Rattus norvegicus	RefSeq	GI_62079040-S	ILMN_288626	LTV1	NM_001014157.1	NM_001014157.1		361452	62079040	NM_001014157.1	Ltv1	NP_001014179.1	ILMN_1349974	0002940093	S	1233	GCCCAAGGTGTCCACCCAGCCCCGTCTCAAAACTGAGAGCAAAGAGGATA	1	-	7956902-7956951	1p13	Rattus norvegicus LTV1 homolog (S. cerevisiae) (Ltv1), mRNA.				RGD1311264	RGD1311264
Rattus norvegicus	RefSeq	GI_62718133-S	ILMN_67320	LOC501296	XM_576709.1	XM_576709.1		501296	62718133	XM_576709.1	LOC501296	XP_576709.1	ILMN_1365174	0003390132	S	939	GGTGGCAGGCTTTGCTGATCCTCAGGTATGTCCTGGATGTTCTGGACCCC					PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501296), mRNA.					
Rattus norvegicus	RefSeq	GI_40786510-S	ILMN_292572	CBARA1	NM_199412.1	NM_199412.1		365567	40786510	NM_199412.1	Cbara1	NP_955444.1	ILMN_1366384	0004850156	S	1955	AGCGGCACCAGGAAGGCTCTTTGCCACCAGCACAGCTCCCGATTCAAAGT					Rattus norvegicus calcium binding atopy-related autoantigen 1 (Cbara1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651539-S	ILMN_68897	LOC503090	XM_578610.1	XM_578610.1		503090	62651539	XM_578610.1	LOC503090	XP_578610.1	ILMN_1364024	0005860440	S	132	CACCGTCCAGCAGGGCCCGCCTTCATGACTGGTATTGGTATTATTGTTGC				6q33	PREDICTED: Rattus norvegicus similar to IG HEAVY CHAIN V REGION 23 PRECURSOR (LOC503090), mRNA.					
Rattus norvegicus	RefSeq	GI_62656160-S	ILMN_51556	RASD1	XM_340809.3	XM_340809.3		64455	109488210	XM_340809.3	Rasd1	XP_340810.1	ILMN_1369914	0002510280	S	1335	TGTGGGGCCAGGACTAACAGGGCATTATCTCGTCTGTGATTGGTGTTGCC	10	-	46291650-46291699	10q22	PREDICTED: Rattus norvegicus RAS, dexamethasone-induced 1 (Rasd1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence NAS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A series of molecular signals mediated by the detection of nitric oxide (NO) [goid 7263] [evidence IDA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_58865851-A	ILMN_273441	TADA2L	NM_001012141.1	NM_001012141.1		360581	58865851	NM_001012141.1	Tada2l	NP_001012141.1	ILMN_1376351	0006350451	S	1742	GGCATAGAGGGAAACCGAGCCACAGCATTTCATCCCAGAAGGCCAGCTAG	10	-	72366259-72366308	10q26	Rattus norvegicus transcriptional adaptor 2 (ADA2 homolog, yeast)-like (Tada2l), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_20301987-S	ILMN_267724	NIP7	NM_138847.1	NM_138847.1		192180	20301987	NM_138847.1	Nip7	NP_620202.1	ILMN_1363954	0007050086	S	656	GCTGTGTGAGAAGACTTAGCTTTGTTTCCTGTGTGCCGGCCATCATGTTT	19	+	36916772-36916821	19q12	Rattus norvegicus nuclear import 7 homolog (S. cerevisiae) (Nip7), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	The aggregation, arrangement and bonding together of the mature ribosome and of its subunits [goid 42255] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Nip7p; pEachy; CGI-37	Nip7p; pEachy; CGI-37
Rattus norvegicus	RefSeq	GI_25742570-S	ILMN_301501	HCN4	NM_021658.1	NM_021658.1		59266	25742570	NM_021658.1	Hcn4	NP_067690.1	ILMN_1354772	0006420162	S	3622	CTCCTGGAAGGCCATATGGTGCCATCCCAGGCCAGCATGTCACTTTGCCT	8	+	62666923-62666972	8q24	Rattus norvegicus hyperpolarization-activated, cyclic nucleotide-gated K+ 4 (Hcn4), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence ISS]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence ISS]; Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process by which the heart decreases in volume in a characteristic way to propel blood through the body [goid 8016] [evidence IEA]; Any process that modulates the frequency or rate of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50804] [evidence TAS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts [goid 5222] [evidence ISS]; Catalysis of the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts [goid 5222] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence TAS]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62642560-S	ILMN_70271	RGD1563099_PREDICTED	XM_217678.3	XM_217678.3		292151	109460316	XM_217678.3	RGD1563099_predicted	XP_217678.1	ILMN_1372769	0000770519	S	282	GGAAAGTGTGAAGGCAGCCAGTGAACTCTACTACTCTCCTCTGTCAGGAG	1	+	267797880-267797929	1q55	PREDICTED: Rattus norvegicus similar to Gcsh protein (predicted) (RGD1563099_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62649077-I	ILMN_56024	GNG10	XM_578454.1	XM_578454.1		114119	62649077	XM_578454.1	Gng10	XP_578454.1	ILMN_1375615	0003940722	S	121	CGGTGAGCGGTGGGGCGGCGAGCGGCGGTCACACTGTGCTTGCTTTGTCT				5q24	PREDICTED: Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 10 (Gng10), mRNA.	Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IEA]; Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein [goid 5834] [evidence IDA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A series of molecular signals mediated by the detection of a hormone [goid 9755] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62651505-S	ILMN_67414	LOC503074	XM_578594.1	XM_578594.1		503074	62651505	XM_578594.1	LOC503074	XP_578594.1	ILMN_1357115	0005220121	S	257	TGCCCTAACGCTGCTTGAGAAGAAGGGTCCAGCCCTAGGTAACCAGCTCT					PREDICTED: Rattus norvegicus similar to Immunoglobulin heavy chain (gamma polypeptide) (LOC503074), mRNA.					
Rattus norvegicus	RefSeq	GI_62643947-S	ILMN_50175	LOC502539	XM_578027.1	XM_578027.1		502539	62643947	XM_578027.1	LOC502539	XP_578027.1	ILMN_1370270	0005130070	S	639	ACAAGGACTTCTCGAATGAAGCCCCAGGAGGGCCTGAGACTGAGACTGGG					PREDICTED: Rattus norvegicus similar to IQ motif containing GTPase activating protein 3 (LOC502539), mRNA.					
Rattus norvegicus	RefSeq	GI_47577506	ILMN_274589	OLR491	NM_001000932.1	NM_001000932.1		405252	47577506	NM_001000932.1	Olr491	NP_001000932.1	ILMN_1650842	0000520193	S	685	TCAGCTGAAGGTAGGCAGAAAGCTTTGTCTACTTGTGGGTCCCACCTAAC	3	-	69498680-69498729	3q24	Rattus norvegicus olfactory receptor 491 (Olr491), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr491	Olr491
Rattus norvegicus	RefSeq	GI_62654701-S	ILMN_48118	LOC501100	XM_576515.1	XM_576515.1		501100	62654701	XM_576515.1	LOC501100	XP_576515.1	ILMN_1349690	0003390053	S	562	GTGGGCAACCTGACCCCAGACACTGGGCCTAATGTGTTATGGTGTATGAG				9q12	PREDICTED: Rattus norvegicus similar to thymus LIM protein TLP-B (LOC501100), mRNA.					
Rattus norvegicus	RefSeq	GI_56606099-S	ILMN_281828	TWF1	NM_001008521.1	NM_001008521.1		315265	56606099	NM_001008521.1	Twf1	NP_001008521.1	ILMN_1365408	0004540136	S	2517	TTCCAGAGCTGCCGTTTCAAGCAGAGGGGGTGCTTTGCGTCCTGGGTCCA	7	-	133089563-133089612	7q35	Rattus norvegicus twinfilin, actin-binding protein, homolog 1 (Drosophila) (Twf1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IEA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence ISS]	MGC105817	MGC105817
Rattus norvegicus	RefSeq	GI_62643640-S	ILMN_57570	LOC502531	XM_578017.1	XM_578017.1		502531	62643640	XM_578017.1	LOC502531	XP_578017.1	ILMN_1365156	0005130068	S	1702	AAGTAGAGAAACAGACCAGCTCTCCTTCCCAGAATGGGCGCAGACGCCGG				2q31	PREDICTED: Rattus norvegicus similar to DNA segment, Chr 3, ERATO Doi 194, expressed (LOC502531), mRNA.					
Rattus norvegicus	RefSeq	GI_13929007-S	ILMN_285902	CLNS1A	NM_031719.1	NM_031719.1		65160	13929007	NM_031719.1	Clns1a	NP_113907.1	ILMN_1366686	0006760239	S	1073	CACGCTGGCAAAAGTGAGGTGGGAGCTTAGATGTCTCTGGGACTTAGGAG	1	+	154966614-154966663	1q32	Rattus norvegicus chloride channel, nucleotide-sensitive, 1A (Clns1a), mRNA.	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]	The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome [goid 387] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; Any process involved in maintaining the equilibrium of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell [goid 6884] [evidence IMP]; Any process involved in maintaining the equilibrium of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell [goid 6884] [evidence IEA]		Clci; pICln; Icln; Clcni	Clci; pICln; Icln; Clcni
Rattus norvegicus	RefSeq	GI_27688886-S	ILMN_275766	LOC684829	XM_001072090.1	XM_001072090.1		684829	109506179	XM_001072090.1	LOC684829	XP_001072090.1	ILMN_1359707	0003780368	S	143	ACCAAGAAGGTCAGGAAAGCACCTAAATCCGCATGTGGCGTGTGCCCAGG					PREDICTED: Rattus norvegicus similar to ribosomal protein L34 (LOC684829), mRNA.					
Rattus norvegicus	RefSeq	GI_17865324-S	ILMN_285729	GLRB	NM_053296.1	NM_053296.1		25456	17865324	NM_053296.1	Glrb	NP_445748.1	ILMN_1367994	0006450068	S	1339	GGACTTGGGAAACCACAGGCAAAGAACAAGAAGCCTCCGCCTGCCAAGCC	2	-	172451909-172451958	2q33	Rattus norvegicus glycine receptor, beta (Glrb), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]	An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence TAS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The discharge, by sperm, of a single, anterior secretory granule following their attachment to the zona pellucida surrounding the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the disperasl of the acrosomal contents into the egg [goid 7340] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The actions or reactions of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg [goid 7628] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process pertaining to the functions of the nervous and muscular systems of an organism [goid 50905] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine [goid 60012] [evidence IDA]; A reflex process in which an animal immediately tries to turn over after being placed in a supine position [goid 60013] [evidence ISS]	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence IDA]; Interacting selectively with glycine, aminoethanoic acid [goid 16594] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16933] [evidence TAS]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16933] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence ISS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence ISS]; Catalysis of the transmembrane transfer of a chloride ion by a channel that opens when extracellular glycine has been bound by the channel complex or one of its constituent parts [goid 16934] [evidence ISS]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 8717357] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_16758143-S	ILMN_301049	MAGED1	NM_053409.1	NM_053409.1		84469	16758143	NM_053409.1	Maged1	NP_445861.1	ILMN_1353122	0004230735	S	2541	ACCGCCAACTTCGCCGCCAACTTCGGTGCCATTGGCTTCTTCTGGGTTGA	X	-	82054245-82054246:82054456-82054463:82054464-82054503	Xq31	Rattus norvegicus melanoma antigen, family D, 1 (Maged1), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]	The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence ISS]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93306; Nrage	MGC93306; Nrage
Rattus norvegicus	RefSeq	GI_62650676-S	ILMN_48794	ARHGAP5	XM_216688.4	XM_216688.4		299012	109478166	XM_216688.4	Arhgap5	XP_216688.4	ILMN_1371871	0000060097	S	4195	CTGCCAGATCCTTTGATTCCATACTCACTCCACCCAGAGCTATTGGAAGC	6	+	72726008-72726057	6q23	PREDICTED: Rattus norvegicus Rho GTPase activating protein 5 (Arhgap5), mRNA.		The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process that modulates the size of a cell [goid 8361] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62659309-S	ILMN_270544	KLHDC8A	XM_001059291.1	XM_001059291.1		305096	109498608	XM_001059291.1	Klhdc8a	XP_001059291.1	ILMN_1357859	0002760438	S	1990	GGTCCCTGGTGATGGAGCGTCAATATCTTCTGTATTCTGTCTTCCGCCAC				13q13	PREDICTED: Rattus norvegicus kelch domain containing 8A (Klhdc8a), mRNA.					
Rattus norvegicus	RefSeq	GI_62653547-S	ILMN_288939	RGD1564752_PREDICTED	XM_001065157.1	XM_001065157.1		363050	109484559	XM_001065157.1	RGD1564752_predicted	XP_001065157.1	ILMN_1353194	0006980632	S	339	TGTTACTCCCCTCCGCAAGAGTCAAGGCGCACGCAGGACGATGGCTACAT				8q22	PREDICTED: Rattus norvegicus RGD1564752 (predicted) (RGD1564752_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666633-S	ILMN_265449	CCNB3_PREDICTED	XM_001064448.1	XM_001064448.1		317389	109511594	XM_001064448.1	Ccnb3_predicted	XP_001064448.1	ILMN_1370525	0004230100	S	3927	TATCGACGAGAGGCCTTCAAAGCTAGCTGCAGCCTCCTTCATCTTGGCCC				Xq13	PREDICTED: Rattus norvegicus cyclin B3 (predicted) (Ccnb3_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659190-S	ILMN_265421	RGD1565762_PREDICTED	XR_007757.1	XR_007757.1		297853	109498429	XR_007757.1	RGD1565762_predicted		ILMN_1360671	0002450164	S	500	CCCCGGTTGACAAGCAGCTCTATGAGAAGAAGGCCACCGAGCTGAAAGAG				13p12	PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1565762_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62644133-S	ILMN_60790	LOC295340	XM_227546.3	XM_227546.3		295340	62644133	XM_227546.3	LOC295340	XP_227546.3	ILMN_1363880	0003840398	S	993	CGTACGATTCGGTCTCTTCGACTAACCCTCTCAATGCAAGCAAGTCAGCC				2q34	PREDICTED: Rattus norvegicus similar to Acidic ribosomal phosphoprotein P0 (LOC295340), mRNA.					
Rattus norvegicus	RefSeq	GI_62660544-S	ILMN_264499	ANAPC4	XM_001054052.1	XM_001054052.1		305420	109500658	XM_001054052.1	Anapc4	XP_001054052.1	ILMN_1351435	0000580167	S	2570	AGAGGTGTTGTCAGAGTCGGAGACAGAGGCTCACCAAGATGCTGCTGCCC				14q11	PREDICTED: Rattus norvegicus anaphase promoting complex subunit 4 (Anapc4), mRNA.	That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]			
Rattus norvegicus	RefSeq	GI_12083642-S	ILMN_302646	EXOC7	NM_022691.1	NM_022691.1		64632	12083642	NM_022691.1	Exoc7	NP_073182.1	ILMN_1371247	0004200369	S	2070	GGCCATCCCAGACACGGAGCAGAGGGACAAGATCCGACAGGCTCAGAAAA				10q32.3	Rattus norvegicus exocyst complex component 7 (Exoc7), mRNA.	A protein complex peripherally associated with the plasma membrane that determines where secretory vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals [goid 145] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence TAS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]		Exo70	Exo70
Rattus norvegicus	RefSeq	GI_62666443-S	ILMN_302499	RHOX4G	NM_001024889.1	NM_001024889.1		313451	67846055	NM_001024889.1	Rhox4g	NP_001020060.1	ILMN_1353093	0004570053	S	614	GAGGGGCCTCTTTTCCAGAAGACTATGCAGGAGTCCTAGAGAACCACCCT	X	+	7681581-7681630	Xq11	Rattus norvegicus reproductive homeobox 4G (Rhox4g), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]	Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62645314-S	ILMN_52783	LOC499817	XM_580021.1	XM_580021.1		499817	62645314	XM_580021.1	LOC499817	XP_580021.1	ILMN_1351263	0001660279	S	105	TGGAAAGCAGCCCTCAGCAGGCGTGACAGACAGTTTCAAGGCCAATGGTG					PREDICTED: Rattus norvegicus LOC499817 (LOC499817), mRNA.					
Rattus norvegicus	RefSeq	GI_62658812-S	ILMN_49622	RIMBP2	XM_341071.3	XM_341071.3		266780	109495813	XM_341071.3	Rimbp2	XP_341072.3	ILMN_1350476	0003140519	S	3226	ACTACTCCCACGACCCGCCCATGCGCACCAAGGCCAAAAGGAAGAAGAGT	12	+	29008566-29008606:29009080-29009088	12q14	PREDICTED: Rattus norvegicus RIM binding protein 2 (Rimbp2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IPI]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62667539-S	ILMN_271667	RGD1565183_PREDICTED	XM_001057767.1	XM_001057767.1		293846	109462345	XM_001057767.1	RGD1565183_predicted	XP_001057767.1	ILMN_1364380	0000770156	S	328	GGCAGATGATCCGAAAGAACAAGTACCACCCTGACCTGCGTATGGTGACC				Xq37	PREDICTED: Rattus norvegicus similar to ribosomal protein L28 (predicted) (RGD1565183_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659267-S	ILMN_266824	LCT	XM_001055660.1	XM_001055660.1		116569	109498567	XM_001055660.1	Lct	XP_001055660.1	ILMN_1357691	0000450605	S	5720	GCAGCCTGGCATTTCTGACCTACAAATACTGCCGGCGCTCCAAGCAAGGG				13q12	PREDICTED: Rattus norvegicus lactase, transcript variant 2 (Lct), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus [goid 9744] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus [goid 10040] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel ion stimulus [goid 10045] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment [goid 42594] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]	Catalysis of the reaction: lactose + H2O = D-glucose + D-galactose [goid 16] [evidence IDA]; Catalysis of the reaction: lactose + H2O = D-glucose + D-galactose [goid 16] [evidence IEA]; Catalysis of the reaction: lactose + H2O = D-glucose + D-galactose [goid 16] [evidence ISS]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: glycosyl-N-acylsphingosine + H2O = a sugar + N-acylsphingosine [goid 17042] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of any O-glycosyl bond [goid 4553] [evidence IEA]; Interacting selectively with cations, charged atoms or groups of atoms with a net positive charge [goid 43169] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577892-S	ILMN_281372	OLR1160	NM_001000985.1	NM_001000985.1		405341	47577892	NM_001000985.1	Olr1160	NP_001000985.1	ILMN_1364826	0002120070	S	390	ACACTACCAAGTCATTCTCAACCCTCGTCTGTGTAGATGTTTGCTCATAC	8	+	18174249-18174298	8q13	Rattus norvegicus olfactory receptor 1160 (Olr1160), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1160	Olr1160
Rattus norvegicus	RefSeq	GI_62666963-S	ILMN_267312	DGAT2L4_PREDICTED	XM_001069359.1	XM_001069359.1		302425	109512052	XM_001069359.1	Dgat2l4_predicted	XP_001069359.1	ILMN_1374932	0000070725	S	804	CTCCTGGGGCCTTCTGCCATATTCTCAGCCAGTAACCACTATTGTCGGGG				Xq31	PREDICTED: Rattus norvegicus diacylglycerol O-acyltransferase 2-like 4 (predicted) (Dgat2l4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643243-S	ILMN_61239	LOC499581	XM_574906.1	XM_574906.1		499581	62643243	XM_574906.1	LOC499581	XP_574906.1	ILMN_1365434	0006100053	S	4988	GAGATATATATAAAGTCTTGAAATTTGGTGTGTCTTTGCGGGGGGAGGGG					PREDICTED: Rattus norvegicus similar to Eif4g1 protein (LOC499581), mRNA.					
Rattus norvegicus	RefSeq	GI_62641241-S	ILMN_271988	NDUFAB1_PREDICTED	XM_001079490.1	XM_001079490.1		293453	109462817	XM_001079490.1	Ndufab1_predicted	XP_001079490.1	ILMN_1351396	0003120619	S	222	CCAGTACAGTGATGCACCCCCACTGACGTTAGAAGGAATCAGGGACCGAG				1q36	PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) (Ndufab1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_29501814-S	ILMN_263661	MFN2	NM_130894.2	NM_130894.2		64476	29501814	NM_130894.2	Mfn2	NP_570964.3	ILMN_1365694	0005270348	S	3759	TCATTGCCAGGCTGGACGGGGTCATCTCACAGTGGGTCAGGACACATCAG	5	-	164951330-164951379	5q36	Rattus norvegicus mitofusin 2 (Mfn2), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope [goid 5741] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins [goid 15630] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located in the mitochondrial outer membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31306] [evidence IDA]	The initial formation of a blastocyst from a solid ball of cells known as a morula [goid 1825] [evidence ISS]; The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein [goid 6626] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial membrane, the lipid bilayer surrounding a mitochondrion [goid 7006] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial membrane, the lipid bilayer surrounding a mitochondrion [goid 7006] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IDA]; Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence IMP]; Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence ISS]; Merging of two or more mitochondria within a cell to form a single compartment [goid 8053] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of Ras protein signal transduction [goid 46580] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence IDA]; Any process by which a mitochondrion or mitochondria are transported to, and/or maintained in, a specific location within the cell [goid 51646] [evidence ISS]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IMP]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IMP]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence IPI]		
Rattus norvegicus	RefSeq	GI_62657372-S	ILMN_274792	SRP68_PREDICTED	XM_001081741.1	XM_001081741.1		363707	109492255	XM_001081741.1	Srp68_predicted	XP_001081741.1	ILMN_1353217	0000110072	S	2235	CATGGCTGGTCACTTTTGGTCAGTACGTGTTCGGGGTCCACACCAGGCCT				10q32.3	PREDICTED: Rattus norvegicus signal recognition particle 68 (predicted) (Srp68_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62646737-S	ILMN_277759	LRRC17	NM_001025155.1	NM_001025155.1		502715	68342018	NM_001025155.1	Lrrc17	NP_001020326.1	ILMN_1368487	0000450603	S	1414	CCGGCATACCCTGAGACGTTTGACCAGGACACAGAAGACGATGAGTGGGA	4	-	8961950-8961999	4q11	Rattus norvegicus leucine rich repeat containing 17 (Lrrc17), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665860-S	ILMN_69371	SUSD2_PREDICTED	XM_215372.3	XM_215372.3		294335	62665860	XM_215372.3	Susd2_predicted	XP_215372.3	ILMN_1375031	0006290471	S	2418	TTGCTGCATCGTCGCAAGAAAAGCAACAGGACCCAGAAGCGGTTGGCGGG				20p12	PREDICTED: Rattus norvegicus sushi domain containing 2 (predicted) (Susd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62651645-S	ILMN_52206	SLC39A5_PREDICTED	XM_343140.3	XM_343140.3		362812	109480093	XM_343140.3	Slc39a5_predicted	XP_343141.3	ILMN_1361348	0001940022	S	1646	CACCACAGGAACGGAGGCGGGACACAGGGCCAGTAGGAGCAATAGGATTT	7	-	1687728-1687777	7q11	PREDICTED: Rattus norvegicus solute carrier family 39 (metal ion transporter), member 5 (predicted) (Slc39a5_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718010-S	ILMN_60797	LOC310926	XM_227769.2	XM_227769.2		310926	62718010	XM_227769.2	LOC310926	XP_227769.2	ILMN_1354272	0002450048	S	1840	AGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCG					PREDICTED: Rattus norvegicus similar to Ac1147 (LOC310926), mRNA.					
Rattus norvegicus	RefSeq	GI_62660277-S	ILMN_278354	RGD1310879_PREDICTED	XM_223282.3	XM_223282.3		305248	62660277	XM_223282.3	RGD1310879_predicted	XP_223282.3	ILMN_1369568	0006220372	S	1495	GCATTCTGCAAGGCAGTCCTCTGGGAGGTTTAAGAACTGGAAGCTATTCC	14	-	18585764-18585813	14p22	PREDICTED: Rattus norvegicus similar to methylenetetrahydrofolate dehydrogenase (NAD) (EC 1.5.1.15) / methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) precursor - mouse (predicted) (RGD1310879_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_41282236-S	ILMN_270258	CAPN2	NM_017116.2	NM_017116.2		29154	41282236	NM_017116.2	Capn2	NP_058812.1	ILMN_1348931	0002970017	S	3354	AACCCCAGGGATGGTGCCTACGGCTCGGGAGAACAGGGCTCAGAAGATCC	13	-	98473476-98473525	13q26	Rattus norvegicus calpain 2 (Capn2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence TAS]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; A process whereby non-proliferating myoblasts fuse to existing fibres or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7520] [evidence ISS]; A process whereby non-proliferating myoblasts fuse to existing fibres or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 7520] [evidence IEA]; Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein [goid 16540] [evidence IC ]	Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IDA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IDA]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IPI]; Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27707305-S	ILMN_288192	RGD1565692_PREDICTED	XR_007477.1	XR_007477.1		501653	109512718	XR_007477.1	RGD1565692_predicted		ILMN_1353806	0002100341	S	300	GTGACACCGCCTGCCAAAGCCACCCAGGCATCTGTACCCAAACTTAGCCA				Xq36	PREDICTED: Rattus norvegicus similar to Su(var)3-9 homolog (predicted) (RGD1565692_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667492-S	ILMN_288192	RGD1565692_PREDICTED	XR_007477.1	XR_007477.1		501653	109512718	XR_007477.1	RGD1565692_predicted		ILMN_1349899	0003170102	S	1241	ACCTCTTCTAGCCCTGAGAAGTCTGAGGCTAACTGAAGGGGCCTGAAGCC				Xq36	PREDICTED: Rattus norvegicus similar to Su(var)3-9 homolog (predicted) (RGD1565692_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_47576726-S	ILMN_291862	OLR1751	NM_001000492.1	NM_001000492.1		302825	47576726	NM_001000492.1	Olr1751	NP_001000492.1	ILMN_1367517	0002340377	S	562	GCCTGCTCAGATACTCAAATCAACAACCTGCTCATCCTTGTTGTTGGGGG	X	-	136992535-136992584	Xq36	Rattus norvegicus olfactory receptor 1751 (Olr1751), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1751; ratchrX-13766579-13765641_ORF	Olr1751; ratchrX-13766579-13765641_ORF
Rattus norvegicus	RefSeq	GI_62666722-S	ILMN_269961	RGD1562863_PREDICTED	XR_008312.1	XR_008312.1		367766	109511643	XR_008312.1	RGD1562863_predicted		ILMN_1361594	0001400280	S	938	CCACGAACCGAGCCCAGGGAGACTTAGGGAGATGCCGGTACACTCGATAT				Xq14	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (predicted) (RGD1562863_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638444-S	ILMN_49822	LOC367594	XM_346223.2	XM_346223.2		367594	62638444	XM_346223.2	LOC367594	XP_346224.2	ILMN_1359008	0005890707	S	10	CGGAACCCCGAATGCCACTTGGAGAGAGATGGGACCACATCACAACTACT					PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (LOC367594), mRNA.					
Rattus norvegicus	RefSeq	Rn.13814	ILMN_58420	RGD1564105_PREDICTED	XM_573538.2	XM_573538.2		498309	109498370	XM_573538.2	RGD1564105_predicted	XP_573538.2	ILMN_1530365	0000360377	S	1270	CGTTTGGCATCAGATATGCAGTCTTAATGAGTTTTATATTCTATTTGTAT	13	-	107032961-107033010	13q27	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B130052G07 (predicted) (RGD1564105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62659961-S	ILMN_58420	RGD1564105_PREDICTED	XM_573538.2	XM_573538.2		498309	109498370	XM_573538.2	RGD1564105_predicted	XP_573538.2	ILMN_1361465	0005860088	S	1987	GCATGCTCCCTTTTGGCTGTGACTGGGGAGCTCTAAGAAGTCAACGTCTG	13	-	107032244-107032293	13q27	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B130052G07 (predicted) (RGD1564105_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638873-S	ILMN_48354	UBE2S_PREDICTED	XM_214806.4	XM_214806.4		292588	109458120	XM_214806.4	Ube2s_predicted	XP_214806.1	ILMN_1374643	0004920279	S	474	CCCTCCCCACATCATCCGCCTAGTGTACAAGGAGGTGACAACACTGACAG	1	+	67746108-67746157	1q12	PREDICTED: Rattus norvegicus ubiquitin-conjugating enzyme E2S (predicted) (Ube2s_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656539-S	ILMN_54922	RPA1	XM_213389.4	XM_213389.4		287524	109488519	XM_213389.4	Rpa1	XP_213389.4	ILMN_1362900	0006650427	S	1909	GAAGGTTGGCTGCGTGTTTGTCAGCATGAACGAGCAGGCGTTTGAAGAGG	10	-	62614552-62614574:62618377-62618403	10q24	PREDICTED: Rattus norvegicus replication protein A1 (Rpa1), mRNA.	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence IEA]; A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure [goid 793] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A conserved heterotrimeric complex that binds nonspecifically to single-stranded DNA and is required for multiple processes in eukaryotic DNA metabolism, including DNA replication, DNA repair, and recombination. In all eukaryotic organisms examined the complex is composed of subunits of approximately 70, 30, and 14 kDa [goid 5662] [evidence IEA]; A conserved heterotrimeric complex that binds nonspecifically to single-stranded DNA and is required for multiple processes in eukaryotic DNA metabolism, including DNA replication, DNA repair, and recombination. In all eukaryotic organisms examined the complex is composed of subunits of approximately 70, 30, and 14 kDa [goid 5662] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence IEA]; A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection [goid 16605] [evidence ISS]	The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes [goid 6297] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62665030-S	ILMN_283690	RGD1304881_PREDICTED	XM_001068441.1	XM_001068441.1		304653	109508557	XM_001068441.1	RGD1304881_predicted	XP_001068441.1	ILMN_1356929	0003710671	S	1812	TGGCAGACAGTGAGCGGTACACTTGGATTGTGCTGTGAGGGCTGGACTGC				19q11	PREDICTED: Rattus norvegicus similar to hypothetical protein 6720484B16 (predicted) (RGD1304881_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_57526970-S	ILMN_293416	GLYAT	NM_001009648.1	NM_001009648.1		293779	57526970	NM_001009648.1	Glyat	NP_001009648.1	ILMN_1365071	0002650524	S	1105	GCTGCTGTCTGTGCTCTGGGGAAGCAGTGTGAATGGCCAACAGATCTCCA	1	+	215667107-215667156	1q43	Rattus norvegicus glycine-N-acyltransferase (Glyat), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]		Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: acyl-CoA + glycine = CoA + N-acylglycine [goid 47961] [evidence IEA]	MGC93750	MGC93750
Rattus norvegicus	RefSeq	GI_62645420-S	ILMN_270474	TSPAN18_PREDICTED	XM_001078551.1	XM_001078551.1		311210	109470345	XM_001078551.1	Tspan18_predicted	XP_001078551.1	ILMN_1357913	0001050541	S	1740	GTCACTCCAGCCAGGACTCCACCCCAATGTAAACTGACCAGGAACTGCCC				3q24	PREDICTED: Rattus norvegicus tetraspanin 18 (predicted) (Tspan18_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62664060-S	ILMN_298352	RGD1561771_PREDICTED	XR_008756.1	XR_008756.1		291800	109506908	XR_008756.1	RGD1561771_predicted		ILMN_1367781	0004210687	S	1316	TCAAAACTCCAAGAAGCCGCAGGAGCTGGCAAAGTCACCAAGTCAGCCAG				18p13	PREDICTED: Rattus norvegicus similar to EEF1A1 protein (predicted) (RGD1561771_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62718764-S	ILMN_60072	LOC501469	XM_576879.2	XM_576879.2		501469	109513922	XM_576879.2	LOC501469	XP_576879.1	ILMN_1373625	0006510292	S	370	CAGGTGTCCCTGATGACCAACATCCTGAATGAAAACAGCACTTGAGAGAC	Un|NW_047968.1	-	160344-160363:160482-160511		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501469), mRNA.					
Rattus norvegicus	RefSeq	GI_62718283-S	ILMN_60072	LOC501469	XM_576879.2	XM_576879.2		501469	109513922	XM_576879.2	LOC501469	XP_576879.1	ILMN_1375187	0006520138	S	329	CACACCAGTAAGAGAGCTTCCTGAAGAATAAGTTGCTTTCTCAGGTGTCC	Un|NW_047968.1	-	160503-160522:160523-160552		PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501469), mRNA.					
Rattus norvegicus	RefSeq	GI_33636727-S	ILMN_290366	NEK6	NM_182953.1	NM_182953.1		360161	33636727	NM_182953.1	Nek6	NP_891998.1	ILMN_1369766	0006510451	S	1117	ATCTGAGCTGGGAGTGGGGGAGGGGCTTGGCAGCCTACTGAAATGTGAAC	3	+	18381658-18381707	3q11	Rattus norvegicus NIMA (never in mitosis gene a)-related kinase 6 (Nek6), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence ISS]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence ISS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle [goid 30071] [evidence ISS]; Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle [goid 30071] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664152-S	ILMN_67360	LOC497720	XM_579423.1	XM_579423.1		497720	62664152	XM_579423.1	LOC497720	XP_579423.1	ILMN_1368464	0004010309	S	2263	TAGGGGATGTATCTTCTGATGGGAAAAAGGAGCCTTCAGATAAAGCTGTG					PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019149 (LOC497720), mRNA.					
Rattus norvegicus	RefSeq	GI_62652396	ILMN_278314	RGD1565735_PREDICTED	XR_007996.1	XR_007996.1		366918	109482164	XR_007996.1	RGD1565735_predicted		ILMN_1651166	0001230053	S	794	CATCCGAGGGCCCACTAACAGGCATCCTGGTTGTCTCCTGCAACTTCAAC				7q22	PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12) (predicted) (RGD1565735_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62643278-A	ILMN_302464	P2RY13	NM_001002853.1	NM_001002853.1		310444	50811826	NM_001002853.1	P2ry13	NP_001002853.1	ILMN_1376380	0006200551	S	932	GTATGAGATGGAGGACAAAGACAGCGGCGTCCAGCGATGAGCACCACAGC	2	-	148600641-148600690	2q31	Rattus norvegicus purinergic receptor P2Y, G-protein coupled, 13 (P2ry13), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IDA]; Combining with a purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity [goid 45028] [evidence IEA]	P2y13	P2y13
Rattus norvegicus	RefSeq	GI_62666413-S	ILMN_51295	LOC501505	XM_580204.1	XM_580204.1		501505	62666413	XM_580204.1	LOC501505	XP_580204.1	ILMN_1352489	0002970064	S	860	GCATCTTGCTCGCTTTAGGAAACTCAATATGCCCCAGCAAGTGCATGTGG					PREDICTED: Rattus norvegicus LOC501505 (LOC501505), mRNA.					
Rattus norvegicus	RefSeq	GI_62656790-S	ILMN_269591	LOC688144	XM_001081287.1	XM_001081287.1		688144	109491677	XM_001081287.1	LOC688144	XP_001081287.1	ILMN_1350557	0005360154	S	1573	GCGGTGCTGCTCTTCCAAGCCTCTTGGTGCACAATAACCCTATTGCTGAG					PREDICTED: Rattus norvegicus similar to ankyrin repeat domain 40 (LOC688144), mRNA.					
Rattus norvegicus	RefSeq	GI_56090605-A	ILMN_290404	CREB3L4	NM_001007093.1	NM_001007093.1		310616	56090605	NM_001007093.1	Creb3l4	NP_001007094.1	ILMN_1376649	0002030128	S	939	GGACATGACAGAAAGCCCGGAGAGTCCAGTGCTAAAGGCCAACCTGGAGG	2	-	182477362-182477411	2q34	Rattus norvegicus cAMP responsive element binding protein 3-like 4 (Creb3l4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]	AIbZIP	AIbZIP
Rattus norvegicus	RefSeq	GI_62650316-S	ILMN_53477	LOC503012	XM_578525.1	XM_578525.1		503012	62650316	XM_578525.1	LOC503012	XP_578525.1	ILMN_1358871	0006760441	S	1180	AGATGAGGGGGGACAGAGGTGTCAAAGGGACCCAGAAGGGAGCAGTCACA					PREDICTED: Rattus norvegicus similar to basic transcription factor 3 (predicted) (LOC503012), mRNA.					
Rattus norvegicus	Unigene	Rn.8739	ILMN_161251	RN.8739	Rn.8739		Rn.8739		82521403	DV728079			ILMN_1530541	0000510152	S	606	ACATTACGTTTCACAATCAGTACACACTTTCAGGTAGTCTTATTTTTATT					RVL20684 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA					
Rattus norvegicus	RefSeq	GI_62655631-S	ILMN_278510	LITAF	XM_001078236.1	XM_001078236.1		65161	109489656	XM_001078236.1	Litaf	XP_001078236.1	ILMN_1357137	0000070538	S	1512	ACGAGCCCATGCTTCAATGCCGAGAGATTGGCTGCTGGAACCCCCTGAAG				10q11	PREDICTED: Rattus norvegicus LPS-induced TN factor (Litaf), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_51948429-S	ILMN_289807	NPDC1	NM_001004231.1	NM_001004231.1		296562	51948429	NM_001004231.1	Npdc1	NP_001004231.1	ILMN_1358074	0003120100	S	1128	ACAGCATTGTGACCCTCTGCATGCTTTTGGCAGGAGAGAGGCGCCAACCC	3	+	3576928-3576977	3p13	Rattus norvegicus neural proliferation, differentiation and control, 1 (Npdc1), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]			MGC94179	MGC94179
Rattus norvegicus	RefSeq	GI_62651170-S	ILMN_302873	RGD1566396_PREDICTED	XM_001067433.1	XM_001067433.1		500710	109479840	XM_001067433.1	RGD1566396_predicted	XP_001067433.1	ILMN_1351417	0004010746	S	577	CTGAGGAGCCAAGGGAAGGAACCACATGGACACACTCCTTGAAAGCTCGG					PREDICTED: Rattus norvegicus similar to RIKEN cDNA D230037D09 gene (predicted) (RGD1566396_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62667031-S	ILMN_266232	OPHN1_PREDICTED	XM_001068634.1	XM_001068634.1		312108	109512041	XM_001068634.1	Ophn1_predicted	XP_001068634.1	ILMN_1359848	0000520707	S	2660	AGTCCGGCCCCCAGGAGAAAAGCAAACAATCATCCGTCCTCCAGTGAGGC				Xq31	PREDICTED: Rattus norvegicus oligophrenin 1 (predicted) (Ophn1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_11464988-S	ILMN_302888	CD86	NM_020081.1	NM_020081.1		56822	11464988	NM_020081.1	Cd86	NP_064466.1	ILMN_1374614	0003190605	S	824	TGAAGATGCAGAACCAGCCCGGCAGACCCAGCAGAAAGACTTGTGAGTCC	11	-	66215276-66215325	11q22	Rattus norvegicus CD86 molecule (Cd86), mRNA.	The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]	The expansion of a T cell population by cell division. Follows T cell activation [goid 42098] [evidence IDA]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence IDA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	B7-2	B7-2
Rattus norvegicus	RefSeq	GI_27679225-S	ILMN_55998	RGD1561133_PREDICTED	XM_222983.2	XM_222983.2		289295	109458016	XM_222983.2	RGD1561133_predicted	XP_222983.2	ILMN_2039098	0000360189	S	2318	CCTTCAGCATTCTAGTGTTCTTCAGTGTCTGGGTAACCTTTCTTCCTGTG	1	+	70474631-70474680	1q21	PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN2) (predicted) (RGD1561133_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_19424271-S	ILMN_287149	RAB26	NM_133580.1	NM_133580.1		171111	19424271	NM_133580.1	Rab26	NP_598264.1	ILMN_1374745	0006400494	S	840	TGCACACGGCCTGGGAAGGACCCCACACACGACCAAAGGCTACAAGAATC	10	-	13780675-13780724	10q12	Rattus norvegicus RAB26, member RAS oncogene family (Rab26), mRNA.	A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane [goid 31226] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]	Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase [goid 185] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence TAS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IDA]; Progression of the exocrine system over time, from its formation to a mature structure. The exocrine system is a system of hormones and glands, where the glands secrete straight to a target site via ducts or tubes. The human exocrine system includes the salivary glands, sweat glands and many glands of the digestive system [goid 35272] [evidence IDA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]	Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence TAS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62664176-S	ILMN_68573	LOC498836	XM_574120.1	XM_574120.1		498836	62664176	XM_574120.1	LOC498836	XP_574120.1	ILMN_1350447	0002320731	S	191	GCGTCATGTGACTTCTGTATCATCAGTAAATGCCATGGGAAGCCCCTCTG					PREDICTED: Rattus norvegicus similar to LRRG00125 (LOC498836), mRNA.					
Rattus norvegicus	RefSeq	GI_62638503-S	ILMN_285926	NOX3	NM_001004216.1	NM_001004216.1		292279	51948403	NM_001004216.1	Nox3	NP_001004216.1	ILMN_1376975	0001090343	S	1292	TGCCTGGACTGAGCAAGGTGTACTTCTACTGGATCTGCCGGGATGCTGCA	1	-	38660890-38660923:38675882-38675897	1q11	Rattus norvegicus NADPH oxidase 3 (Nox3), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence ISS]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IEA]	A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence IEA]; The series of events in which a gravitational stimulus is received by a cell and converted into a molecular signal [goid 9590] [evidence ISS]; The series of events in which a gravitational stimulus is received by a cell and converted into a molecular signal [goid 9590] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus [goid 9629] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence IEA]; The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure [goid 48840] [evidence ISS]; The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure [goid 48840] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence TAS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665941-S	ILMN_50569	LOC361839	XM_342133.2	XM_342133.2		361839	62665941	XM_342133.2	LOC361839	XP_342134.2	ILMN_1367575	0000780181	S	1077	TGCTAGGACTAAGGCAGGACAACCGAGCCTGCTTCTCTGTAGCCATCGGC				20p11-q11	PREDICTED: Rattus norvegicus similar to catenin alpha 3 (LOC361839), mRNA.					
Rattus norvegicus	RefSeq	GI_31543523-S	ILMN_263681	PTGER4	NM_032076.2	NM_032076.2		84023	31543523	NM_032076.2	Ptger4	NP_114465.2	ILMN_1350638	0006420451	S	1529	GTGTCTTGTTGGTGGATGAGGTTAGTGGGAGCCAGAGAGAGGAGCCTGCC	2	-	54423354-54423403	2q16	Rattus norvegicus prostaglandin E receptor 4 (subtype EP4) (Ptger4), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence IEA]; Any process that modulates the frequency, rate or extent of bone formation [goid 30278] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity [goid 4957] [evidence IEA]	Ptgerep4; Ptger	Ptgerep4; Ptger
Rattus norvegicus	RefSeq	GI_32401462-S	ILMN_299388	GPR135	NM_181771.1	NM_181771.1		314213	32401462	NM_181771.1	Gpr135	NP_861436.1	ILMN_1373145	0006290538	S	1236	CGCTAGTGGGTCAGGAGGGGAAGTGGTCATGTGGGCTCGAAAAAACCCAG	6	-	94263076-94263125	6q24	Rattus norvegicus G protein-coupled receptor 135 (Gpr135), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_61556923-S	ILMN_277643	RG9MTD3	NM_001013090.1	NM_001013090.1		298081	61556923	NM_001013090.1	Rg9mtd3	NP_001013108.1	ILMN_1362802	0000070279	S	1062	GGCAGTGGCACACACTTGCCTCCACATGCTGTCTTGGATCTTTGAAAGCC	5	+	61877077-61877126	5q22	Rattus norvegicus RNA (guanine-9-) methyltransferase domain containing 3 (Rg9mtd3), mRNA.			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62649951-S	ILMN_289733	LOC313641	XR_005454.1	XR_005454.1		313641	109475695	XR_005454.1	LOC313641		ILMN_1364597	0003190433	S	13559	CGCCACACCCCCCTCATTCAGTTTGACAGCGAGGTATGGGGTGATAACCG	5	+	156328377-156328426	5q36	PREDICTED: Rattus norvegicus perlecan (LOC313641), misc RNA.	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]	Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62652068-S	ILMN_50536	MGAT4C_PREDICTED	XM_235099.4	XM_235099.4		299756	109480535	XM_235099.4	Mgat4c_predicted	XP_235099.4	ILMN_1367243	0002570403	S	1130	GTAGTGTTGATGAGTACTTTTGGGGAAAGCCACCTTCAACGGGGGATACG	7	+	40382230-40382279	7q13	PREDICTED: Rattus norvegicus mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (predicted) (Mgat4c_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657102-S	ILMN_65614	TMEM101	XM_220940.4	XM_220940.4		303564	109489072	XM_220940.4	Tmem101	XP_220940.1	ILMN_1355473	0003870025	S	1496	TGCTGCATCTATTCCCAGCTTCTTGGTTGGCTGGGCGGGTGGAGCAAGCT	10	-	91218438-91218487	10q32.1	PREDICTED: Rattus norvegicus transmembrane protein 101 (Tmem101), mRNA.		Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62653997-S	ILMN_273163	SNX22_PREDICTED	XM_001075684.1	XM_001075684.1		300796	109484865	XM_001075684.1	Snx22_predicted	XP_001075684.1	ILMN_1355976	0002900097	S	237	TTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCG				8q24	PREDICTED: Rattus norvegicus sorting nexin 22 (predicted) (Snx22_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62642603-S	ILMN_271358	LOC308398	XM_001075896.1	XM_001075896.1		308398	109461378	XM_001075896.1	LOC308398	XP_001075896.1	ILMN_1362674	0000380114	S	1274	GGTCTCAAGGAGCAGAGGAAGGGGCTGGTGACCCTGGTGCTGTGGAACAA					PREDICTED: Rattus norvegicus similar to F28C1.3a (LOC308398), mRNA.			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_27465564-S	ILMN_299657	NPC2	NM_173118.1	NM_173118.1		286898	27465564	NM_173118.1	Npc2	NP_775141.1	ILMN_1352122	0000070088	S	861	GGCTGGCCGGGAGTATTACCTCTTCTGTATCTAAGTGCCTCCTGAGTCCC	6	-	108794128-108794177	6q31	Rattus norvegicus Niemann-Pick disease, type C2 (Npc2), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence IEA]; A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions [goid 5764] [evidence ISS]	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence IEA]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells [goid 32367] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence IEA]; Interacting selectively with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 15485] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	re1	re1
Rattus norvegicus	RefSeq	GI_62644358-S	ILMN_49258	LOC295406	XM_227632.3	XM_227632.3		295406	62644358	XM_227632.3	LOC295406	XP_227632.3	ILMN_1354630	0006940064	S	583	TGCCCCCCTCTGCTGTTCCTGTGAGGACTCGGAAGCTTGTGGGGACAAAA				2q41	PREDICTED: Rattus norvegicus similar to 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (LOC295406), mRNA.					
Rattus norvegicus	RefSeq	GI_62643027-S	ILMN_50689	RGD1563920_PREDICTED	XM_574861.2	XM_574861.2		499539	109464489	XM_574861.2	RGD1563920_predicted	XP_574861.1	ILMN_1367315	0002690706	S	2460	CGATCCCATCTTAGCAGTACCAGGCTGTGGTTTGTTGTTAGAGCGTCATC	2	+	58874165-58874214	2q16	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9930036E21 gene (predicted) (RGD1563920_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62655728-S	ILMN_276547	RGD1561796_PREDICTED	XM_001077638.1	XM_001077638.1		360483	109489629	XM_001077638.1	RGD1561796_predicted	XP_001077638.1	ILMN_1350519	0001450181	S	993	GTCAGCCACTTGTACCTGGGAGGTCAGGCCGAGCAGAGAATCGGGTTCCT				10q12	PREDICTED: Rattus norvegicus RGD1561796 (predicted) (RGD1561796_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666280-S	ILMN_289497	RGD1561147_PREDICTED	XR_008624.1	XR_008624.1		499468	109510305	XR_008624.1	RGD1561147_predicted		ILMN_1359039	0002640168	S	2055	CATGGCCTACTGCAACAGCCTGAGAGTTCTGCTAGACGGCTTTCCTACCA				20q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ37396 (predicted) (RGD1561147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62666282-S	ILMN_289497	RGD1561147_PREDICTED	XR_008624.1	XR_008624.1		499468	109510305	XR_008624.1	RGD1561147_predicted		ILMN_1374152	0005420397	S	1745	CCGGCGTGGACAGCCCTGTTGATGTCAAGGTCAGCCTCTAGGATGGAGAT				20q12	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ37396 (predicted) (RGD1561147_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605763-S	ILMN_267504	RGD1307279	NM_001008343.1	NM_001008343.1		307210	56605763	NM_001008343.1	RGD1307279	NP_001008344.1	ILMN_1366889	0003290025	S	760	GCAAACAACGGGCTAAAGCGCATCCGTGTGAAGTTCTATATCGAGGGCTC	18	-	81524858-81524907	18q12.3	Rattus norvegicus similar to RIKEN cDNA 2700002I20 (RGD1307279), mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]	The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]		MGC94128	MGC94128
Rattus norvegicus	RefSeq	GI_48675370-S	ILMN_299789	C1QBP	NM_019259.2	NM_019259.2		29681	48675370	NM_019259.2	C1qbp	NP_062132.2	ILMN_1367456	0002450021	S	851	ACTGAAGGCCTCAATCTAAACGGCCAGCTCTGGTGGGCGAGCAAAAGCTG	10	-	57881971-57882020	10q24	Rattus norvegicus complement component 1, q subcomponent binding protein (C1qbp), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence TAS]	Interacting selectively with the C1q component of the classical complement cascade [goid 1849] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Habp1; gC1qR; MGC91723	Habp1; gC1qR; MGC91723
Rattus norvegicus	RefSeq	GI_62646938-S	ILMN_292112	FAM71F2	NM_001024323.1	NM_001024323.1		500060	66730279	NM_001024323.1	Fam71f2	NP_001019494.1	ILMN_1350128	0004570605	S	1122	CCAGTGGGGTCCTCGTTGGTTGTGTTTTGGGGAGGTTCTGAGCAGTTGGG	4	+	56170242-56170291	4q22	Rattus norvegicus family with sequence similarity 71, member F2 (Fam71f2), mRNA.					
Rattus norvegicus	RefSeq	GI_62665864-S	ILMN_272281	TBC1D22B	NM_001025059.1	NM_001025059.1		502414	68163550	NM_001025059.1	Tbc1d22b	NP_001020230.1	ILMN_2040537	0006130521	S	1341	GGCTTCTCGCACTTCCATCTCTACGTGTGCGCCGCCTTCTTGATCAAGTG	20	+	7919540-7919589	20p12	Rattus norvegicus TBC1 domain family, member 22B (Tbc1d22b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665771-S	ILMN_272281	TBC1D22B	NM_001025059.1	NM_001025059.1		502414	68163550	NM_001025059.1	Tbc1d22b	NP_001020230.1	ILMN_1356219	0005860731	S	3372	CCCCCCTCCAGCAGACTGAGTAAAGACAGACTTGTGTTCCCAAGTGGTGG				20p12	Rattus norvegicus TBC1 domain family, member 22B (Tbc1d22b), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577292	ILMN_280731	OLR721	NM_001000362.1	NM_001000362.1		295914	47577292	NM_001000362.1	Olr721	NP_001000362.1	ILMN_1650943	0000380408	S	526	CTGACCCCTTTGCTGAAACTTGTCTGTATGGACACACGCAACCTGGGTCT	3	-	74277871-74277920	3q24	Rattus norvegicus olfactory receptor 721 (Olr721), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr721; ratchr3-74174818-74173907_ORF	Olr721; ratchr3-74174818-74173907_ORF
Rattus norvegicus	RefSeq	GI_60678273-S	ILMN_264879	CDH20	NM_001012748.1	NM_001012748.1		363948	60678273	NM_001012748.1	Cdh20	NP_001012766.1	ILMN_1355171	0003450026	S	2313	GCAGAGCTTTGATTTCCTCACGGACTGGGGACCTCGCTTCCGGAAACTGG	13	+	11038810-11038859	13p13	Rattus norvegicus cadherin 20 (Cdh20), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cad20	Cad20
Rattus norvegicus	RefSeq	GI_62650015-S	ILMN_59370	RGD1562463_PREDICTED	XM_575958.2	XM_575958.2		500587	109475765	XM_575958.2	RGD1562463_predicted	XP_575958.1	ILMN_1352377	0000540484	S	468	GCTGAAGGGTATTGGGAGGAACTGATGGACACCACCCGACCGGACATCGA	5	-	165234655-165234704	5q36	PREDICTED: Rattus norvegicus similar to : F-box protein 44 (predicted) (RGD1562463_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62656887-S	ILMN_53231	HOXB9_PREDICTED	XM_220887.2	XM_220887.2		287647	62656887	XM_220887.2	Hoxb9_predicted	XP_220887.1	ILMN_1371067	0006940600	S	1481	CAACCCTGTCCCCAAGCTGTTGTGAGCTAGAAAGGGCAAGAAAAGCAGGG				10q31	PREDICTED: Rattus norvegicus homeo box B9 (predicted) (Hoxb9_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_24308467-S	ILMN_301495	PPBP	NM_153721.1	NM_153721.1		246358	24308467	NM_153721.1	Ppbp	NP_714943.1	ILMN_1350276	0000110148	S	255	CACTGAAGAATGGAAAGGAAGTGTGCCTGGACCCGACTGCCCCTATGATC	14	-	18816481-18816530	14p22	Rattus norvegicus pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) (Ppbp), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence TAS]; The process by which platelets bud from long processes extended by megakaryocytes [goid 30220] [evidence TAS]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Ppbp; Nap-2	Ppbp; Nap-2
Rattus norvegicus	RefSeq	GI_47059198-S	ILMN_286015	NRM	NM_212508.1	NM_212508.1		361791	47059198	NM_212508.1	Nrm	NP_997673.1	ILMN_1353509	0006040079	S	1186	GTGTTTCCACCTCGAGGAGCTATGTCAGGGCCTATCTGAAAGTTTGTAGG	20	-	3035981-3036030	20p12	Rattus norvegicus nurim (nuclear envelope membrane protein) (Nrm), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope [goid 5637] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]				
Rattus norvegicus	RefSeq	GI_9845233-S	ILMN_280449	ANXA2	NM_019905.1	NM_019905.1		56611	9845233	NM_019905.1	Anxa2	NP_063970.1	ILMN_1364260	0001090746	S	1055	ACGACTGAAGGGCTTGGCATGGTGGATTGCCCAGAAGTGGCCCTACCTGT	8	+	73933759-73933766:73933767-73933808	8q24	Rattus norvegicus annexin A2 (Anxa2), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence ISS]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence ISS]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IEA]; Any process that modulates the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51917] [evidence TAS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence IEA]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IEA]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with phosphatidylinositol-4,5-bisphosphate, a diphosphorylated derivative of phosphatidylinositol [goid 5546] [evidence IDA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence TAS]; Stops, prevents or reduces the activity of a phospholipase, an enzyme that catalyzes of the hydrolysis of a phospholipid [goid 4859] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium [goid 5544] [evidence IEA]; Interacting selectively with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton) [goid 8092] [evidence IEA]	annexin II; ANX2	annexin II; ANX2
Rattus norvegicus	RefSeq	GI_62654063-S	ILMN_293773	RWDD2_PREDICTED	XM_001064338.1	XM_001064338.1		363110	109485097	XM_001064338.1	Rwdd2_predicted	XP_001064338.1	ILMN_1362297	0006400095	S	767	TGCAAGCACGCAGAAACTGTGGAGACAGAGGGGGACGGTGAGGACCTACG				8q31	PREDICTED: Rattus norvegicus RWD domain containing 2 (predicted) (Rwdd2_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_33414502-S	ILMN_292010	ZP3R	NM_182815.1	NM_182815.1		289010	33414502	NM_182815.1	Zp3r	NP_877967.1	ILMN_1371162	0003710184	S	1827	TGGAACCTCCACTCAACATCTGGACCGACACGTAAGAACCTCCACTCCTG	13	-	43497258-43497307	13q13	Rattus norvegicus zona pellucida 3 receptor (Zp3r), mRNA.	A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction [goid 43159] [evidence IEA]; A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction [goid 43159] [evidence ISS]; A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction [goid 43159] [evidence IEA]; A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction [goid 43159] [pmid 12737520] [evidence IDA]; The volume enclosed within the acrosome membrane [goid 43160] [evidence IEA]	The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]; The union of male and female gametes to form a zygote [goid 7338] [evidence ISS]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IMP]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence ISS]; The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]; The process by which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place [goid 7339] [evidence IEA]; The union of male and female gametes to form a zygote [goid 7338] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	sp56; MGC94417	sp56; MGC94417
Rattus norvegicus	RefSeq	GI_62639200-S	ILMN_65914	NUMBL_PREDICTED	XM_218360.3	XM_218360.3		292732	62639200	XM_218360.3	Numbl_predicted	XP_218360.3	ILMN_1360607	0001170079	S	2787	GAGGATGAAGACGCTCTGTTACCTCATGTCCGTGCCCGCTGGGGAGGGGT				1q21	PREDICTED: Rattus norvegicus numb-like (predicted) (Numbl_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56090597-S	ILMN_274525	ECHDC1	NM_001007734.1	NM_001007734.1		361465	56090597	NM_001007734.1	Echdc1	NP_001007735.1	ILMN_1373528	0005570315	S	1645	GCCGTTCTACTGAGCACCAACTGGCTATACAAAGTAGCATTGCGTTGGAA	1	-	29266503-29266552	1p11	Rattus norvegicus enoyl Coenzyme A hydratase domain containing 1 (Echdc1), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]	MGC93992	MGC93992
Rattus norvegicus	RefSeq	Rn.4220	ILMN_274525	ECHDC1	NM_001007734.1	NM_001007734.1		361465	56090597	NM_001007734.1	Echdc1	NP_001007735.1	ILMN_1530351	0006290563	S	1771	CCTTTTCATTGTTACCATATTTAGTTTTGAGGAATGTCTAACTTTTTGTG	1	-	29266377-29266426	1p11	Rattus norvegicus enoyl Coenzyme A hydratase domain containing 1 (Echdc1), mRNA.		The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]	MGC93992	MGC93992
Rattus norvegicus	RefSeq	GI_62078820-S	ILMN_274881	RGD1311463	NM_001014045.1	NM_001014045.1		311279	62078820	NM_001014045.1	RGD1311463	NP_001014067.1	ILMN_1349996	0006040440	S	1035	CCGCTGGTCATGGGAGTGTTGATTACCGCTGCTGTCGTTGAGACGTGTGC	3	-	92462727-92462776	3q33	Rattus norvegicus similar to RIKEN cDNA 2700007P21 (RGD1311463), mRNA.				MGC109199	MGC109199
Rattus norvegicus	RefSeq	GI_62645840-S	ILMN_269386	RGD1307907_PREDICTED	XM_001081122.1	XM_001081122.1		362212	109470796	XM_001081122.1	RGD1307907_predicted	XP_001081122.1	ILMN_1356444	0005670592	S	2164	GAGATCTGTGTATGCAGGTGAAGAACTCAGGTGTGGGAGGGTCTGCCGCC				3q36	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14681 (predicted) (RGD1307907_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62657891-S	ILMN_263345	ATP6V1A1_PREDICTED	XM_001060277.1	XM_001060277.1		360716	109494306	XM_001060277.1	Atp6v1a1_predicted	XP_001060277.1	ILMN_1365855	0001660722	S	2280	GCATGTGCTCTATTGGGGATGGAAGGCCAGATCTCCATACCGTGGACAGG					PREDICTED: Rattus norvegicus ATPase, H transporting, lysosomal V1 subunit A (predicted) (Atp6v1a1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640839-S	ILMN_56831	LOC365276	XM_344904.2	XM_344904.2		365276	62640839	XM_344904.2	LOC365276	XP_344905.2	ILMN_1351600	0006110066	S	1167	GAGGAGGCGAGGGTTGTGGGTCTAGGGTTGGGCAACTTCGTGAAGGGAAT					PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610040D20 (LOC365276), mRNA.					
Rattus norvegicus	RefSeq	GI_54400731-S	ILMN_263497	CAPZB	NM_001005903.1	NM_001005903.1		298584	54400731	NM_001005903.1	Capzb	NP_001005903.1	ILMN_1351150	0004060273	S	1264	AGGGAAACTGGAGCTCTGATCCGTGTGTGTTTGGGGGTTGCTTGGAGCCG	5	+	158080320-158080369	5q36	Rattus norvegicus capping protein (actin filament) muscle Z-line, beta (Capzb), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments [goid 8290] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]	A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence ISS]; Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell [goid 30032] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]	Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95097	MGC95097
Rattus norvegicus	RefSeq	GI_62643185-S	ILMN_58201	LOC502517	XM_578001.1	XM_578001.1		502517	62643185	XM_578001.1	LOC502517	XP_578001.1	ILMN_1359185	0006660273	S	5296	CACAGTGTCCACATGCAGAGCACAGACTCAGTTTCCCACATGCAGAGAGC					PREDICTED: Rattus norvegicus similar to hypothetical protein Tb927.2.4050 (LOC502517), mRNA.					
Rattus norvegicus	RefSeq	GI_51854240-S	ILMN_270131	SIPA1	NM_001004089.1	NM_001004089.1		361710	51854240	NM_001004089.1	Sipa1	NP_001004089.1	ILMN_1368126	0004120048	S	2790	CTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGG	1	-	208277152-208277201	1q43	Rattus norvegicus signal-induced proliferation-associated gene 1 (Sipa1), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]	Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]	Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Spa1	Spa1
Rattus norvegicus	RefSeq	GI_15100178-S	ILMN_276511	MDH1	NM_033235.1	NM_033235.1		24551	15100178	NM_033235.1	Mdh1	NP_150238.1	ILMN_1370063	0003130452	S	963	TCCCGTGAGAAGATGGACCTGACAGCAAAGGAGCTGACCGAGGAAAAGGA	14	-	102259360-102259409	14q22	Rattus norvegicus malate dehydrogenase 1, NAD (soluble) (Mdh1), mRNA.	That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle [goid 6107] [evidence IDA]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence IDA]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence IEA]; The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid [goid 19674] [evidence IDA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate [goid 16615] [evidence IDA]; Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids [goid 30060] [evidence IDA]; Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids [goid 30060] [evidence IEA]; Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids [goid 30060] [evidence ISS]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]	Mdhl; Mor2; MDL1	Mdhl; Mor2; MDL1
Rattus norvegicus	RefSeq	GI_57012401-S	ILMN_295612	RT1-CE2	NM_001008840.1	NM_001008840.1		414779	57012401	NM_001008840.1	RT1-CE2	NP_001008840.1	ILMN_1350126	0003610309	S	985	GTGGTGGCTATTGTGAGGAGGAGAAACACAGGTGGGAAAGGAGACTACGC	20	-	3577123-3577142:3577319-3577348	20p12	Rattus norvegicus RT1 class I, CE2 (RT1-CE2), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		RT1-C/E2	RT1-C/E2
Rattus norvegicus	RefSeq	GI_62718841-S	ILMN_66122	LOC501494	XM_580200.1	XM_580200.1		501494	62718841	XM_580200.1	LOC501494	XP_580200.1	ILMN_1372754	0002320440	S	269	GGCAACCCTGGGGAATGTCATTGAGTCCTTGGTAGGTGTCGAGTAGGTAA					PREDICTED: Rattus norvegicus LOC501494 (LOC501494), mRNA.					
Rattus norvegicus	RefSeq	GI_62666190-S	ILMN_62447	LOC502445	XM_577926.1	XM_577926.1		502445	62666190	XM_577926.1	LOC502445	XP_577926.1	ILMN_1359943	0000870050	S	731	CAAGGCAGGACTTCTGGAACTCCTACTTGATGAACTGCTGGAAGAAGACT					PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502445), mRNA.					
Rattus norvegicus	RefSeq	GI_62649897-S	ILMN_53058	LOC366489	XM_345594.2	XM_345594.2		366489	62649897	XM_345594.2	LOC366489	XP_345595.2	ILMN_1359338	0003290037	S	1285	GAAGCCTGACAGAGAACATCTGGGCCTTTGCTGGCCTTTCCAGACCTCAG				5q36	PREDICTED: Rattus norvegicus similar to LOC230863 protein (predicted) (LOC366489), mRNA.					
Rattus norvegicus	RefSeq	GI_62718340-S	ILMN_54621	LOC501371	XM_576784.1	XM_576784.1		501371	62718340	XM_576784.1	LOC501371	XP_576784.1	ILMN_1349504	0006770082	S	1785	GTTATTTGTCACCTAAAGTGAATTAGGAAGGCCTGGTCCCCTCACTCGAG					PREDICTED: Rattus norvegicus similar to glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A (LOC501371), mRNA.					
Rattus norvegicus	RefSeq	GI_34866101-S	ILMN_265316	LOC365059	XR_007974.1	XR_007974.1		365059	109460392	XR_007974.1	LOC365059		ILMN_1360732	0000460114	S	753	CTGTGGCTTGCATTGCCAAGCTGGAAAAGGCAAAGGCTAAAGAACTCGCC				1p12	PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC365059), mRNA.					
Rattus norvegicus	RefSeq	GI_62663058	ILMN_272210	LOC290864	XM_001074632.1	XM_001074632.1		290864	109485324	XM_001074632.1	LOC290864	XP_001074632.1	ILMN_1650624	0003450504	S	2817	GGCCGCCTACGTGTTGTTTTACCAGCGTCGGGATGATGAGTGTCCCAGCA					PREDICTED: Rattus norvegicus similar to Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin thiolesterase 4) (Ubiquitin-specific processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein), transcript variant 3 (LOC290864), mRNA.					
Rattus norvegicus	RefSeq	GI_62654304	ILMN_50453	RGD1565640_PREDICTED	XM_578754.2	XM_578754.2		503227	109483926	XM_578754.2	RGD1565640_predicted	XP_578754.2	ILMN_1649878	0000780484	S	443	GTCCTACTGGAGGTGCCATGTTTGCTCTTCACGGGGTGTCATCAAGGGCC	8	+	111637921-111637970	8q32	PREDICTED: Rattus norvegicus similar to IQ motif containing F1 (predicted) (RGD1565640_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_27686994-S	ILMN_161767	LOC294690	XM_226742.1	XM_226742.1			27686994	XM_226742.1	LOC294690		ILMN_2040001	0007560136	S	598	CCACCATTTCCAGCAGTGTATGTTCTGAGTAATATCCGAACTGTCAGGGG										
Rattus norvegicus	RefSeq	GI_8393031-S	ILMN_281462	PTK2B	NM_017318.1	NM_017318.1		50646	8393031	NM_017318.1	Ptk2b	NP_059014.1	ILMN_1363233	0000840010	S	3781	CATGGGCCACAGTCCAGGAACAAGCTAATCCAGCCACAGGGAAGAAGCAG	15	-	45589417-45589466	15p12	Rattus norvegicus protein tyrosine kinase 2 beta (Ptk2b), mRNA.	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]	Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals [goid 302] [evidence IEP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization [goid 1556] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IEP]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands [goid 7173] [evidence IMP]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus [goid 10226] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; The multiplication or reproduction of glial cells by cell division, resulting in the expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others [goid 14009] [evidence IEP]; The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine [goid 18108] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; Any process that initiates the activity of an inactive GTPase of the Rac family through the replacement of GDP by GTP [goid 32863] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IPI]; The process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it [goid 42976] [evidence IMP]; Assembly of a stress fiber, the bundle of microfilaments and other proteins found in fibroblasts [goid 43149] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence IMP]; The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during angiogenesis [goid 43534] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The aggregation, arrangement and bonding together of a set of components to form a complex capable of relaying a signal within a cell. Complex formation involves dimerization of a receptor protein tyrosine kinase followed by the association of several different intracellular signaling molecules with the cytoplasmic tails of the receptors [goid 7172] [evidence IEA]	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with a 3-phosphoinositide-dependent protein kinase [goid 43423] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate [goid 4715] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]	MGC124628; Pyk2; CAKbeta	MGC124628; Pyk2; CAKbeta
Rattus norvegicus	RefSeq	GI_62654491-S	ILMN_59547	WDR48_PREDICTED	XM_343503.3	XM_343503.3		363164	109484094	XM_343503.3	Wdr48_predicted	XP_343504.3	ILMN_1351593	0000870546	S	2730	CAGGCAGTAACAGCTGGTGTGTGTTGTGCAGTGCTGCCCCATAGTGCCCT	8	+	124882286-124882335	8q32	PREDICTED: Rattus norvegicus WD repeat domain 48 (predicted) (Wdr48_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62661870-S	ILMN_65532	LOC501985	XM_577414.1	XM_577414.1		501985	62661870	XM_577414.1	LOC501985	XP_577414.1	ILMN_1362996	0001690215	S	271	CTTCCCTGCACATCACAGACTCTCAGCCCAGGGTGAAAGGACAGCAAGTG				15p14	PREDICTED: Rattus norvegicus similar to variable region-alpha RVA19 (LOC501985), mRNA.					
Rattus norvegicus	RefSeq	GI_62646252-S	ILMN_52701	LOC362257	XM_342562.2	XM_342562.2		362257	62646252	XM_342562.2	LOC362257	XP_342563.2	ILMN_1349274	0005290121	S	3372	GGCTGGTCAGTAGATGTGGGGAGACACCCCGGTTGGACGGGACATGTGTC				3q42	PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230339M05 gene (predicted) (LOC362257), mRNA.					
Rattus norvegicus	RefSeq	Rn.9220	ILMN_280875	QPRT	NM_001009646.1	NM_001009646.1		293504	57528251	NM_001009646.1	Qprt	NP_001009646.1	ILMN_1530394	0004760131	S	1110	GTTTTGCTTGCCTCCGTTTTCTCATCTGTGAAGTGGGTCTAATAAATATT	1	-	186358551-186358600	1q36	Rattus norvegicus quinolinate phosphoribosyltransferase (Qprt), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 34213] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 34213] [evidence IEA]; The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 46874] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IEA]	Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4514] [evidence ISS]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4514] [evidence IEA]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4514] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	MGC108807	MGC108807
Rattus norvegicus	RefSeq	GI_57528251-S	ILMN_280875	QPRT	NM_001009646.1	NM_001009646.1		293504	57528251	NM_001009646.1	Qprt	NP_001009646.1	ILMN_1363648	0001050064	S	920	TTCCAGTGCCTCATGCTCGCCGGTCCTAAAGCTGAAGAAGATGCCACCAG	1	-	186358741-186358762:186358763-186358790	1q36	Rattus norvegicus quinolinate phosphoribosyltransferase (Qprt), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IEA]; The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH [goid 9435] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 34213] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 34213] [evidence IEA]; The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid [goid 46874] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51259] [evidence IEA]	Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4514] [evidence ISS]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4514] [evidence IEA]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4514] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]	MGC108807	MGC108807
Rattus norvegicus	RefSeq	GI_62643442-S	ILMN_262946	RGD1560177_PREDICTED	XM_001057282.1	XM_001057282.1		499615	109466638	XM_001057282.1	RGD1560177_predicted	XP_001057282.1	ILMN_1374873	0003520156	S	1362	CCACGCCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTGTTTCTTT				2q26	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810489O06 (predicted) (RGD1560177_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62658666	ILMN_62163	LOC501819	XM_577231.1	XM_577231.1		501819	62658666	XM_577231.1	LOC501819	XP_577231.1	ILMN_1650122	0005890092	S	1	ATGAAGGCACAGGATGCTCAGGGTTATCCTTTAAATCCCTGCAGTGGCTT					PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC501819), mRNA.					
Rattus norvegicus	RefSeq	GI_62647203-S	ILMN_292265	ZNF467	NM_001024327.1	NM_001024327.1		500110	66730271	NM_001024327.1	Znf467	NP_001019498.1	ILMN_1355126	0006980253	S	2695	TGCCTGACGAGAGGGAGCAGTGGGGGGATGGGGTCTGAGTTTAGAGAGAA	4	-	76522090-76522139	4q24	Rattus norvegicus zinc finger protein 467 (Znf467), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]	The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62718041-S	ILMN_266327	LOC501281	XM_001056647.1	XM_001056647.1		501281	109486555	XM_001056647.1	LOC501281	XP_001056647.1	ILMN_1362474	0002810176	S	2059	GTCTGGATGAAGGTTTTGGAGCCAGGAGACTTTCTGCCCTCTTGCCTGCC					PREDICTED: Rattus norvegicus similar to RAN binding protein 3 isoform RANBP3-b (LOC501281), mRNA.					
Rattus norvegicus	RefSeq	GI_62641426-S	ILMN_272958	HBE2	NM_001024805.1	NM_001024805.1		502359	67078537	NM_001024805.1	Hbe2	NP_001019976.1	ILMN_1374144	0005340129	S	174	TCCCCAGATCAGAGCCCATGGCAAGAAAGTGCTGGTGTCCCTAGGCTTGG	1	-	161648725-161648774	1q32	Rattus norvegicus hemoglobin, epsilon 2 (Hbe2), mRNA.	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IDA]; An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group [goid 5833] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of oxygen (O2) into, out of, within or between cells [goid 15671] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IDA]	Enables the directed movement of oxygen into, out of, within or between cells [goid 5344] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IDA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with a hemoglobin alpha chain [goid 31721] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Hbe2	Hbe2
Rattus norvegicus	RefSeq	GI_20806118-S	ILMN_268133	CST11	NM_139085.1	NM_139085.1		245916	20806118	NM_139085.1	Cst11	NP_620785.1	ILMN_1363195	0000580632	S	256	GGAGTTTCACATCACGGTGGAAATGCAGCGGACCACCTGCCTGAAGACAG	3	-	137526165-137526214	3q41	Rattus norvegicus cystatin 11 (Cst11), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		 [goid 4869] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47577174-S	ILMN_294383	OLR747	NM_001001068.1	NM_001001068.1		405956	47577174	NM_001001068.1	Olr747	NP_001001068.1	ILMN_1362359	0002680136	S	312	CCATCTCCTGGGGGGATGTGAAATGGTGTTGCTGGTAGCTATGGCTTGGG	3	-	96795920-96795969	3q34	Rattus norvegicus olfactory receptor 747 (Olr747), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr747	Olr747
Rattus norvegicus	RefSeq	GI_62647236-S	ILMN_263937	RGD1564712_PREDICTED	XM_238621.3	XM_238621.3		302244	62647236	XM_238621.3	RGD1564712_predicted	XP_238621.1	ILMN_1354058	0001940128	S	171	GGTTACAAGCAAGGTACCTAAGGAGGTACAGACAGGAAGTGGGGGAGCAG	4	-	77807134-77807171:77808931-77808942	4q24	PREDICTED: Rattus norvegicus RGD1564712 (predicted) (RGD1564712_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62648774-S	ILMN_63123	LOC500431	XM_575793.1	XM_575793.1		500431	62648774	XM_575793.1	LOC500431	XP_575793.1	ILMN_1372788	0003520471	S	1813	CAGCTGTGGGCTTCTCCAGCAGGGATCATGAAGAGCAGCTAACTTGCCCT					PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC500431), mRNA.					
Rattus norvegicus	RefSeq	GI_62650253-S	ILMN_264902	RGD1311615_PREDICTED	XM_001062907.1	XM_001062907.1		366531	109478938	XM_001062907.1	RGD1311615_predicted	XP_001062907.1	ILMN_1354412	0002570204	S	1552	TGCCTGAAGCACCTGGGCAAACACCTGAAGGCTGAACACTACTTCATCCG				6q11	PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ33868 (predicted) (RGD1311615_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_54312093-A	ILMN_300128	DAGLA	NM_001005886.1	NM_001005886.1		309207	54312093	NM_001005886.1	Dagla	NP_001005886.1	ILMN_1376676	0004810139	S	5103	TGCAGCCATACTGTGTTACAGGCTTGGGGCTGGGGCAGGCTTGGACTCAG	1	-	212734073-212734122	1q43	Rattus norvegicus diacylglycerol lipase, alpha (Dagla), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_47576576-S	ILMN_297024	OLR868	NM_001000821.1	NM_001000821.1		405110	47576576	NM_001000821.1	Olr868	NP_001000821.1	ILMN_1359555	0001410280	S	299	GCGGTCTGCAGATGTATGTGTTTGCGGCCCTGGGTATCACTGAATGTACC	5	-	139436465-139436514	5q36	Rattus norvegicus olfactory receptor 868 (Olr868), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr868	Olr868
Rattus norvegicus	RefSeq	GI_8394512-S	ILMN_296494	UNC119	NM_017188.1	NM_017188.1		29402	8394512	NM_017188.1	Unc119	NP_058884.1	ILMN_1372394	0004760050	S	1149	CATCAGGGGCCAAGAAACTGCCCGAGGTGTGAGCGGGGTGGGTCCAGATT	10	-	64286047-64286096	10q25	Rattus norvegicus UNC-119 homolog (C. elegans) (Unc119), mRNA.		The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]		RRG4; Uncl19	RRG4; Uncl19
Rattus norvegicus	RefSeq	GI_16758811-S	ILMN_300626	SLC7A9	NM_053929.1	NM_053929.1		116726	16758811	NM_053929.1	Slc7a9	NP_446381.1	ILMN_1362364	0005690136	S	1591	GATGCTGATGGAAGTTGTCCCACCAGAGAAGGACCCAGAGTAAAAGGCCC	1	+	87998954-87998996:87998997-87999003	1q21	Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 (Slc7a9), mRNA.	The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IDA]; The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells [goid 15804] [evidence ISS]	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IDA]; Catalysis of the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have a pH of 7 [goid 15175] [evidence ISS]; Interacting selectively with an antigen peptide, a fragment of a foreign protein derived by proteolysis within the cell [goid 42605] [evidence ISS]	MGC114282	MGC114282
Rattus norvegicus	RefSeq	GI_62655771-S	ILMN_288954	PRSS32_PREDICTED	XM_001056587.1	XM_001056587.1		302970	109490283	XM_001056587.1	Prss32_predicted	XP_001056587.1	ILMN_1355130	0004010347	S	815	ACTGTGCTCTGTCCAATAGGCCGGGCGTTTACACCAATGTCAGCGTCTAC				10q12	PREDICTED: Rattus norvegicus protease, serine, 32 (predicted) (Prss32_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_34868943-S	ILMN_264175	DUPD1_PREDICTED	XM_001057815.1	XM_001057815.1		361003	109502104	XM_001057815.1	Dupd1_predicted	XP_001057815.1	ILMN_1348915	0002470131	S	549	CCGAAGCCGGTCAGCAACTCTGGTCCTGGCCTACCTGATGATCCACAAGA				15p16	PREDICTED: Rattus norvegicus dual specificity phosphatase and pro isomerase domain containing 1 (predicted) (Dupd1_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62640809-S	ILMN_55346	LOC293059	XM_214985.3	XM_214985.3		293059	62640809	XM_214985.3	LOC293059	XP_214985.2	ILMN_1357269	0004850292	S	380	CCACTGGGTGTCAAAAGGCATTTCGCCTGAAGCCTTGCATGGCGTACCAC				1q31	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3110040N11 (predicted) (LOC293059), mRNA.					
Rattus norvegicus	RefSeq	GI_27753971-S	ILMN_264490	FZD5	NM_173838.1	NM_173838.1		317674	27753971	NM_173838.1	Fzd5	NP_776210.1	ILMN_1362768	0001410131	S	1618	AGCTCTCGACGGGGCCATAAAAGCGGTGGCGCTATGGTCGCAGGAGACTA	9	-	63387080-63387129	9q32	Rattus norvegicus frizzled homolog 5 (Drosophila) (Fzd5), mRNA.	The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4926] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]		
Rattus norvegicus	RefSeq	GI_62645000-S	ILMN_59614	C5	XM_345342.3	XM_345342.3		362119	109468075	XM_345342.3	C5	XP_345343.3	ILMN_1363357	0007100441	S	3727	ACTCTCCAACGTCCAGACAGCTCAGCACCCAACAGCGGCACAGCAGGTAT	3	-	14034379-14034428	3p11	PREDICTED: Rattus norvegicus complement component 5 (C5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow [goid 5579] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The movement of leukocytes within or between different tissues and organs of the body during an inflammatory response [goid 2523] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway [goid 6956] [evidence TAS]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence TAS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IDA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IDA]	Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a C5a anaphylatoxin chemotactic receptor [goid 31714] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62644998-S	ILMN_59614	C5	XM_345342.3	XM_345342.3		362119	109468075	XM_345342.3	C5	XP_345343.3	ILMN_1364204	0006290603	S	5222	TTGTGGAGAGCCGAAGGCAGGTCCCCCAAGGCTATTGGACATCAGCACCA	3	-	14011274-14011323	3p11	PREDICTED: Rattus norvegicus complement component 5 (C5), mRNA.	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow [goid 5579] [evidence TAS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	The movement of leukocytes within or between different tissues and organs of the body during an inflammatory response [goid 2523] [evidence IMP]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway [goid 6956] [evidence TAS]; Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 6957] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The rupture of cell membranes and the loss of cytoplasm [goid 19835] [evidence TAS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IDA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IDA]	Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides [goid 4866] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a C5a anaphylatoxin chemotactic receptor [goid 31714] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62647519-S	ILMN_47734	LOC502795	XM_578294.1	XM_578294.1		502795	62647519	XM_578294.1	LOC502795	XP_578294.1	ILMN_1352432	0007100156	S	472	GTCTCTACCCTCTTCCTACAGATTTAGGGGATACTGCTGCTAAAGTTTGC				4q31	PREDICTED: Rattus norvegicus similar to immunoglobulin light chain (LOC502795), mRNA.					
Rattus norvegicus	RefSeq	GI_34879487-S	ILMN_55391	GPR39_PREDICTED	XM_222578.2	XM_222578.2		288995	34879487	XM_222578.2	Gpr39_predicted	XP_222578.2	ILMN_1356331	0003360113	S	798	CGGAAGTCAGAGAGTGAGGAGAGCCGGACAGCGAGAAGACAGACCATCAT					PREDICTED: Rattus norvegicus G protein-coupled receptor 39 (predicted) (Gpr39_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62662605-S	ILMN_64750	LOC498625	XM_573905.1	XM_573905.1		498625	62662605	XM_573905.1	LOC498625	XP_573905.1	ILMN_1373104	0006840180	S	398	GCGGGGTGTGTGTGCATGTGGGGTGCAGGTGAAAGTCATTGCATCAGAAC					PREDICTED: Rattus norvegicus similar to glycine receptor, alpha 3 subunit (LOC498625), mRNA.					
Rattus norvegicus	RefSeq	GI_62650658-S	ILMN_47924	LOC298998	XM_238451.3	XM_238451.3		298998	62650658	XM_238451.3	LOC298998	XP_238451.1	ILMN_1367827	0006520168	S	237	CCACCAGTGTGCTGACACCAAGCAGGAATTTCCAAGTAGAGAGCAGACTC					PREDICTED: Rattus norvegicus hypothetical LOC298998 (LOC298998), mRNA.					
Rattus norvegicus	RefSeq	GI_47777729-S	ILMN_280985	OLR1686	NM_001001373.1	NM_001001373.1		294152	47777729	NM_001001373.1	Olr1686	NP_001001373.1	ILMN_1361807	0003990452	S	716	CCTGTGGATCCCACCTGCTGGTAGTGGTACTATTTTATGGCACAATCACC	20	-	416745-416794	20p12	Rattus norvegicus olfactory receptor gene Olr1686 (Olr1686), mRNA.	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_16758929-S	ILMN_284540	CTRL	NM_054009.1	NM_054009.1		117184	16758929	NM_054009.1	Ctrl	NP_446461.1	ILMN_2039175	0005700703	S	729	AGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAACACCTGGATCAACC	19	-	35774050-35774099	19q12	Rattus norvegicus chymotrypsin-like (Ctrl), mRNA.		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IDA]		
Rattus norvegicus	RefSeq	GI_62657185-S	ILMN_48124	LOC498009	XM_579768.1	XM_579768.1		498009	62657185	XM_579768.1	LOC498009	XP_579768.1	ILMN_1365114	0006290040	S	329	CTTCCTGGGAGAACAACACTGAGCCACAGGCTGGAAGGAGAAGGAGCACC					PREDICTED: Rattus norvegicus LOC498009 (LOC498009), mRNA.					
Rattus norvegicus	RefSeq	GI_16758409-A	ILMN_287386	RTN4R	NM_053613.1	NM_053613.1		113912	16758409	NM_053613.1	Rtn4r	NP_446065.1	ILMN_1376294	0005050053	S	1097	GTGACACTCCACCAGGCAATGGCTCAGGCCCACGGCACATCAATGACTCT	11	-	84839335-84839384	11q23	Rattus norvegicus reticulon 4 receptor (Rtn4r), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]	Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axonogenesis [goid 50771] [evidence TAS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	NgR; NgR1; Nogor	NgR; NgR1; Nogor
Rattus norvegicus	RefSeq	GI_62659265-A	ILMN_285364	UBXN4	NM_001012025.1	NM_001012025.1		304766	58865625	NM_001012025.1	Ubxn4	NP_001012025.1	ILMN_1376831	0001660398	S	2045	CCACCGCCACTTCCTACTCAGACTTCACAGCCCTCTAGCCCAGCGTTTCA	13	+	40980216-40980265	13q12	Rattus norvegicus UBX domain protein 4 (Ubxn4), mRNA.	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]			
Rattus norvegicus	RefSeq	GI_62656274-S	ILMN_263179	ARHGEF15_PREDICTED	XM_001079166.1	XM_001079166.1		287418	109491066	XM_001079166.1	Arhgef15_predicted	XP_001079166.1	ILMN_1375045	0001980685	S	2655	GAGTCCAAGGCTCCCCGAAAGCATCTGCACAAGAATCCAGAAGGTTGGCT				10q24	PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 15 (predicted) (Arhgef15_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62645249-S	ILMN_289880	GPR155_PREDICTED	XM_001062029.1	XM_001062029.1		311730	109470091	XM_001062029.1	Gpr155_predicted	XP_001062029.1	ILMN_1362495	0001500438	S	2323	TCTGCCGGGACCTTCTGTGGCTGTGACCTGGTGAACTGGCTCATCGAAGT				3q22-q23	PREDICTED: Rattus norvegicus G protein-coupled receptor 155 (predicted) (Gpr155_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_46485404-S	ILMN_270465	PLP2	NM_207601.1	NM_207601.1		302562	46485404	NM_207601.1	Plp2	NP_997484.1	ILMN_1349466	0002680133	S	891	TGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCCAGACATG	X	+	26878332-26878381	Xq13	Rattus norvegicus proteolipid protein 2 (colonic epithelium-enriched) (Plp2), mRNA.	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a chemokine, any of a subgroup of cytokines which act primarily on hemopoietic cells in acute and inflammatory processes and other immunoregulatory functions [goid 19956] [evidence ISS]	A4-LSB; Plp2	A4-LSB; Plp2
Rattus norvegicus	RefSeq	GI_62662258-S	ILMN_58701	RGD1559804_PREDICTED	XM_573867.2	XM_573867.2		498591	109503101	XM_573867.2	RGD1559804_predicted	XP_573867.1	ILMN_1355105	0004280148	S	123	CCGAAAGGTAAGATCATCGACCAAGACCAGTCAAAGCCATGAGCACACAG	16	-	11612925-11612974	16p15	PREDICTED: Rattus norvegicus similar to hypothetical protein 4930474N05 (predicted) (RGD1559804_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_62638303-S	ILMN_274375	RGD1560303_PREDICTED	XM_001072561.1	XM_001072561.1		292948	109460493	XM_001072561.1	RGD1560303_predicted	XP_001072561.1	ILMN_1352289	0001990647	S	1193	CCCCTGTTCAACCGAAGAAGACACCCGTTATGGGCAGAGGTTACAAGCGC				1p12	PREDICTED: Rattus norvegicus similar to hypothetical protein 4933423E17 (predicted) (RGD1560303_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_6978662-S	ILMN_299510	CLCN1	NM_013147.1	NM_013147.1		25688	6978662	NM_013147.1	Clcn1	NP_037279.1	ILMN_1362416	0003290114	S	2932	CAGCCAGAGTGGAGGGTGAGCTGGAGGAACTGGAGATGGTGGGGAACCTA	4	+	70081297-70081320:70081321-70081346	4q23	Rattus norvegicus chloride channel 1 (Clcn1), mRNA.	Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]	The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; A neurological process that causes the sequential depolarization of a neuron's cell membrane along an axon [goid 19227] [evidence ISS]	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IDA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]; Interacting selectively with chloride ions (Cl-) [goid 31404] [evidence IEA]	SMCC	SMCC
Rattus norvegicus	RefSeq	GI_6981489-S	ILMN_293700	RPS29	NM_012876.1	NM_012876.1		25348	6981489	NM_012876.1	Rps29	NP_037008.1	ILMN_1357393	0002900309	S	1	CTCGTTCCTTTTTCCTCCTTGGGCGTCTGAAGGCAAGATGGGTCACCAGC	6	-	91117035-91117048:91117049-91117084	6q24	Rattus norvegicus ribosomal protein S29 (Rps29), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence TAS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]		
Rattus norvegicus	RefSeq	GI_62665582-S	ILMN_278554	RT1.M4_PREDICTED	XM_001075582.1	XM_001075582.1		309584	109509714	XM_001075582.1	RT1.M4_predicted	XP_001075582.1	ILMN_1356021	0001090441	S	487	GAGGCTCAGATCACCAGGCGCAAGTGGGAGGCATCTGGTATTGCTACATC				20p12	PREDICTED: Rattus norvegicus MHC class Ib antigen (predicted) (RT1.M4_predicted), mRNA.					
Rattus norvegicus	RefSeq	GI_56605729-S	ILMN_272956	REXO2	NM_001008326.1	NM_001008326.1		300689	56605729	NM_001008326.1	Rexo2	NP_001008327.1	ILMN_1368759	0006180047	S	1016	GACGAGACATCACTATTCCGTTCCTTCTAGTCTGCTGTTTCCGTCGCGAG	8	-	51748994-51749043	8q23	Rattus norvegicus REX2, RNA exonuclease 2 homolog (S. cerevisiae) (Rexo2), mRNA.	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]	The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence ISS]	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end [goid 8408] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]	Smfn; MGC105914	Smfn; MGC105914
Rattus norvegicus	RefSeq	GI_42476180-S	ILMN_279920	MDH2	NM_031151.2	NM_031151.2		81829	42476180	NM_031151.2	Mdh2	NP_112413.2	ILMN_1374806	0004920270	S	1056	AGGCCATCCCTGAGCTGAAAGCCTCCATCAAGAAAGGCGAGGACTTTGTG	12	-	22021487-22021536	12q12	Rattus norvegicus malate dehydrogenase 2, NAD (mitochondrial) (Mdh2), nuclear gene encoding mitochondrial protein, mRNA.	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IDA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle [goid 6099] [evidence IEA]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence IDA]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence ISS]; The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle [goid 6108] [evidence IEA]; The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells [goid 44262] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate [goid 16615] [evidence IDA]; Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids [goid 30060] [evidence ISS]; Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids [goid 30060] [evidence ISS]; Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids [goid 30060] [evidence IEA]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]; Catalysis of the reaction: (S)-malate + NADP+ = oxaloacetate + NADPH + H+ [goid 46554] [evidence IDA]	Mdh2; Mor1	Mdh2; Mor1
Rattus norvegicus	RefSeq	GI_19924082-S	ILMN_294543	PDE9A	NM_138543.1	NM_138543.1		191569	19924082	NM_138543.1	Pde9a	NP_612552.1	ILMN_1358464	0004850471	S	1729	CAGGATCTTCCACACAAGGATGGTCGTGCCCAGATGACCCCCAGATGACC	20	+	9901372-9901421	20p12	Rattus norvegicus phosphodiesterase 9A (Pde9a), mRNA.	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response [goid 19934] [evidence IEP]	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate [goid 47555] [evidence IDA]; Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate [goid 47555] [evidence IEA]; Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate [goid 47555] [evidence ISS]		
[Controls]
Probe_Id	Array_Address_Id	Reporter_Group_Name	Reporter_Group_id	Reporter_Composite_map	Probe_Sequence
ILMN_1379461	0002760121	negative	permuted_negative		CGAGCGCCTGCCCCATTGGTGCTATGGATGTGGGGTTTGCTTTATGTTCT
ILMN_1380054	0002350487	negative	permuted_negative		AGGTGCACATTCCAGATCACACCAGGTACCTCAGGCATCACCTTAACAGG
ILMN_1379681	0000110403	negative	permuted_negative		GGGTGGGGAATTGTCGTCCTAGAACTCAGCAGAGATTTGATAGACGAGCA
ILMN_1379380	0002650575	negative	permuted_negative		TGACTATTCAGGCTGAACCACCCTCTAGCCAAACTCTCAGTAAGCCCGGG
ILMN_1380199	0004210138	negative	permuted_negative		GTTTACCCCCTTGCTTCATCCCATGGCAGTAACGGGTGGTATCTCGCTCC
ILMN_1380367	0006520286	negative	permuted_negative		TGACCAGGGTTTCACGGAGATGCATAGAGTTGGTAGCTGATGGAGCCAGG
ILMN_1379881	0006450088	negative	permuted_negative		GCCTGTTTGCCATTTGTCCCTACACTTGTAGCTTGGTCGGATCGACAAGA
ILMN_1379936	0005390079	negative	permuted_negative		TTGGATGGTGGCATGACCGGCCTGGAGGCCGCTTTAACAGCAGCGAATTC
ILMN_1380243	0000630739	negative	permuted_negative		AGCGATCCCTTTCCAGTCACTAAAATCTGCGAAGCCCAGGGCATCTTGCC
ILMN_1379846	0004920138	negative	permuted_negative		GACAGATAATTCAAGGGAGAGTCTCGAGTAAGCCTACAGGGGCCAATGAG
ILMN_1379728	0002450193	negative	permuted_negative		CATGGCCCCAGTCGCTTGCTTTCGGTTGCAAATGAACAGTGCAAGTACAG
ILMN_1380069	0006770541	negative	permuted_negative		GGTGGCCAATCTTCTTGAAAAGCGGGGCCTGAGTTGCTGGAACTCCAGAA
ILMN_1380011	0004730408	negative	permuted_negative		TGTGAGGGGTGGGAGTGACTGCGGATTCAGGACCTTCAGGATGAAGAAGA
ILMN_1379642	0002900504	negative	permuted_negative		CCTAGACTGCAGGACTGGAAGCGGAGCAGATGAGGGACCTTGAGGAGTGT
ILMN_1379751	0003120397	negative	permuted_negative		TTCGCCTACACCAGGTCTTGGGCTTAAGGCGGGTAAAGGGGTCATTCGTA
ILMN_1379491	0000060110	negative	permuted_negative		CAGACCGAGATGGCCGTCATTGTGTGAAGACCATGGGCAGTAACCTGCTG
ILMN_1380111	0000130458	negative	permuted_negative		ACCAAACCATCAGCCCGGCCGCCAGTACTGCCCTTAAAATACTCACTTAC
ILMN_1379835	0005360451	negative	permuted_negative		CTGCCTGAGTACGACGGTACAGTAGAGGCCTAGTGATGCGGCTTCAGTGA
ILMN_1379964	0005550139	negative	permuted_negative		TCCGGTTGTGGTCTATACAGAAGAACCCCGGCCACAACTGTAAAAGTGGC
ILMN_1380091	0006510162	negative	permuted_negative		AACTCCGTATGAGTATTGTCAGGGAAAGAGGGACGCGCCATGCTAGTACA
ILMN_1379736	0006380017	negative	permuted_negative		CCTCTATGACACCACCATCAGCAAGGCCTCGAGGGGGCCTTTTCCCCACT
ILMN_1379746	0002370253	negative	permuted_negative		ACCCCAGAAAGGAGAGCTCAGGCGAAACTCGGTGTCAGTATGAGCGTACA
ILMN_1380215	0006110408	negative	permuted_negative		GTCCCAACAGGAGGCACAACAGCCCCGTTGCCACCTATAACGCTATTAGA
ILMN_1379875	0002350463	negative	permuted_negative		GTCCTGGCATGTCCTGGCGACTCACAATTGCTTACATGCCTATGAGACTG
ILMN_1379851	0006450592	negative	permuted_negative		AGCACATGAATTGCCCGGTGCACTCACGGAGGAAATCAAAGACGAGCTCG
ILMN_1380337	0002680072	negative	permuted_negative		CAGAAACCTGAACCATCAGAGAGCCTGGCACCCCTAAAACTACGACCAAC
ILMN_1379979	0001050093	negative	permuted_negative		ACCTGGGGAACCGAGTCTTGAATAAGCACAAGAGGAAGCTGTTGTGGCTG
ILMN_1379540	0004070019	negative	permuted_negative		GGCCGGAACAGATGCAGTATGACCTGGCCGGAACGCACGTGGAGCTTCAC
ILMN_1379863	0001940670	negative	permuted_negative		CTTGAACTCCTATTTGCCACAATTAGCTGGTTAGCCCGGGATCCGGTTCA
ILMN_1379799	0001580497	negative	permuted_negative		ATGGTTCTTCTCGGGAATTCTGCTTCAAGGGACTTGTGACCGGATGGAGG
ILMN_1379407	0006180156	negative	permuted_negative		TGGTCTTCCGCAGGCGAGGAAGGATGCAACCTCAGCCTAGGTCTAGGGAG
ILMN_1379520	0005130112	negative	permuted_negative		CTTTGCCATTCTCGGCGCCTTTGCTTCAGCTTCATCCTGGTTGATATTGG
ILMN_1378268	0002630215	low_stringency_hyb	phage_lambda_genome:mm2		AATTAAAACGATGCACTCAGGGTTTAGCGCGTAGACGTATTGCATTATGC
ILMN_1379452	0001500315	negative	permuted_negative		AGTAGAGCCTGGCACAGACTGCACTGACTCACTTCCTACAGTGACCAGAC
ILMN_1380320	0003190403	negative	permuted_negative		TGTCCCATCTCTGGGCAGCTATTCGTAGGGCCCATCCGTTCTGGTAATGT
ILMN_1380169	0001570435	negative	permuted_negative		ACACTGGAGCTAGCCCAATCTTCATCACTCCTCAGCATTCAACCCAGGAA
ILMN_1379554	0006550097	negative	permuted_negative		CCAGTGCACACTCCAAATTTACCGGCGGGTTGAGCTACTACTTGCACGTC
ILMN_1379567	0000730348	negative	permuted_negative		CATGGGCGTAGCCTGTTAACTCCGAGGGTCATGGGACTAGTAAACTTCCT
ILMN_1380327	0005220133	negative	permuted_negative		AGTAAGGGGATACCCATACTAGGCTTGATCCAGGGACCTCTACTATCGGG
ILMN_1380341	0004590673	negative	permuted_negative		TGAAGGAATTGCACCGCCCTGTGAGGGATACTGGACCAGAACAAGAGCCC
ILMN_1380075	0000430176	negative	permuted_negative		GGCGATAAGTCACTGGACCTCGATGTCTTAGGAGATGGCGGGTGGGAGGA
ILMN_1379413	0006660601	negative	permuted_negative		GTGAGCCCTGGTTTAGATCGCTCGATGCGGAATATGCAGGAGCTTTTGTC
ILMN_1379585	0006290273	negative	permuted_negative		CAATCCTCCTGACCAGTCAGTGCCAATCGACACTGGAGCCCCGTAGTCAC
ILMN_1379931	0004760059	negative	permuted_negative		GGAGGCTTTCCTGCTGTGCAGGCTGTTATCAAGGGATGCTGTATCTCGGG
ILMN_2038784	0003060242	housekeeping	housekeeping	GI_42476285-S	ATGGTGAAGCTGATCGAGAGCAAGGAAGCTTTTCAGGAGGCCCTGGCCGC
ILMN_2038783	0007000603	housekeeping	housekeeping	GI_42476285-S	CTGCCAGGATGTTGCTGCAGACTGTGAAGTCAAATGCATGCCGACCTTCC
ILMN_1379706	0006520575	negative	permuted_negative		TTCCCCATATGTCGTGACTCCCCCAGGGGAAGAACAACTGTATTCAGGTG
ILMN_1379672	0000770068	negative	permuted_negative		CAACATCTTCTTAGTCCCCGTTCGGAGCGCAGGTGAGGGTCAGTCCTCTC
ILMN_1379961	0003800440	negative	permuted_negative		GCTCCACCTGCCTTTGGAGTGACACACTCCCGCACGCCTTGCACGAGGTG
ILMN_1379471	0001570603	negative	permuted_negative		AATCTTAGATCACTGAAAATGCATCCATTAGCGTCCCCCTGCCCGACGCC
ILMN_1379515	0001170131	negative	permuted_negative		TCAACTTGGACACACCACTTGGGGGAGCCGCAAGTCCAAAGGGGGCATCA
ILMN_1380061	0003850746	negative	permuted_negative		GAGATGAACTATCTGGAGGTTAGTTGAGACGACCCCGCCTGAAAGCGCAG
ILMN_1379713	0003830164	negative	permuted_negative		CGTAAGGGTTAGCCACCAGCTTGGATTCTGAACCAGAGCTGGGTGTGAAG
ILMN_1379917	0004010433	negative	permuted_negative		CGTTCACCTTCTTGCGCACCACATCTCGAGGTAGTGCTCCGCAGAGAGCT
ILMN_1379408	0001050288	negative	permuted_negative		GCATGGTTTTTGCTGTTGGGAGCGGAGAGAACGGACTTAGACAGAGACAG
ILMN_1380099	0002260100	negative	permuted_negative		TGGGTATGTGGATCGAAAGAGACCGTGTGACTTGGTGGCTGCAATTCCAC
ILMN_1380042	0004850132	negative	permuted_negative		ATTGAGCCTCGGAGCGAGCATTGTCCAAACCTAGAGCATTTCTCTTCCCT
ILMN_1378235	0003990446	biotin	phage_lambda_genome		CCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGTTTCAA
ILMN_1380232	0002510494	negative	permuted_negative		CCCCCCACTTTAGAGTTCGACCCCAGTCAAGGAACCAACAGCCCAGGAAC
ILMN_1379597	0001780528	negative	permuted_negative		CAGAGGTATGGAAAACTTTGGGACGCCACCTGAGGCCCAATCCCACTGGT
ILMN_1380160	0003390706	negative	permuted_negative		CGGGCGGGTAGACAGAGTAGGCATCCACATGTAACTGAGTGGACGGCATG
ILMN_1380034	0000110593	negative	permuted_negative		CCGAATCTGTGAGGTCCTCCGTGTGACGCTCGTCTAGATGCTGTGGGCAT
ILMN_1379874	0000870181	negative	permuted_negative		TACTTGGAGCCAGTGTGAACACCGTCGGAAACGCTGCTCAACACTTTCAG
ILMN_1379887	0001050731	negative	permuted_negative		ATGAAGTATCAGCCAAGCCCAGGTTCCAGCAACGGATATACACAGACCTG
ILMN_1380155	0004610114	negative	permuted_negative		CAACTCGTGCCACTCGAGAACCTGAGTAGCAAGGATAGATGCCCTCCAAG
ILMN_1379784	0002320092	negative	permuted_negative		CAGTTGGACACACAGCAACTCGCATATCTGAATCCGTCGCAGAGAAAGGG
ILMN_1380230	0000580673	negative	permuted_negative		CAGTTCGCCTTTGTAGCACAGCCACAGATGCAGGTCAGTCACAATATGTC
ILMN_1379855	0005550736	negative	permuted_negative		TGATGGGGGACGCCGTCTAAGTCACGTTGACACGAGGTTCCACTGACATC
ILMN_1379692	0007000368	negative	permuted_negative		CACGACGAACTAAATAACCGGAGGGAGACTTCGCACCCCCGTTCACACAG
ILMN_1380375	0004560592	negative	permuted_negative		GAGTCTCGGACTGAAGTCGTCACGGTGGAGGAAGGCTCAAACAGATGAGG
ILMN_1379397	0000360707	negative	permuted_negative		CGTCATTCGTAACAAGGAACTAGCTGGACCTGTGCGTGTGCCCCGTGATG
ILMN_1379760	0000050041	negative	permuted_negative		AATGCAGTATTGCCACAAACACCGGCCGGATTAGCTTAACTGCAGTGCCC
ILMN_1380121	0006620736	negative	permuted_negative		AGCCTCAGTTCGGAGGGCCCATTCTCGTAACATTCGGTGACTAAAGCCCC
ILMN_1380106	0006900301	negative	permuted_negative		CTCGGCAGTATGCCCACATTTAGGTAGACACCTCTCTTACTCGCCCCGAA
ILMN_1380256	0000130364	negative	permuted_negative		CGGAGAACAGATTTGAGTCCATGCTCCCACACGAAGGCGTACCTCATGGA
ILMN_1379494	0002640619	negative	permuted_negative		ACATTGCAGGTGGACATCTTATCAATCAGTTCCTGTGTGCCCTGGGGCTC
ILMN_1379499	0006900082	negative	permuted_negative		CACTGACGAGATGGTGGACAAGGCATGGAGGAGATGTCCATCGTCCTCTT
ILMN_1379442	0004540519	negative	permuted_negative		CAGTTCCATTGCGCCAATAGTGGCTGTCGGGACAGGGCTTATCTTGTTCT
ILMN_1379616	0005910184	negative	permuted_negative		AATCTGCTTTAGCCCGCACCGAGAGCGTCCTTTTCTGGTCTGCCGGAGAG
ILMN_1379668	0003290022	negative	permuted_negative		TAATGTGGGGACCTGATCGACGCAAAGGCGAAAGGATCCCGCTCCTCAAT
ILMN_1379399	0004780594	negative	permuted_negative		TGTGCAGTACACCTGTGCAGTCGAGAGCCTGATGCCAGTCACATTGCTGG
ILMN_1379462	0005720347	negative	permuted_negative		AAAAAGTGCGAGGAACAGACGGGACACTTAGGCGAAGCAAGAGGATGCAA
ILMN_1380182	0002360017	negative	permuted_negative		GTGATTGGAAGGCTATCCGGCGCGTTATAATCTCAGTCTGGCTCCCCACA
ILMN_1379816	0000780195	negative	permuted_negative		TTCTGTTTCGGCCCATTGCAGTACCTTGGGGCTCATCCGCCGTAATGTCT
ILMN_1379423	0002760128	negative	permuted_negative		CACTCGTGAACTAGGACTGTCGCGGAGATCCTACTACTTCCTCCACGGAG
ILMN_1379967	0001980731	negative	permuted_negative		ACAGGCACCCTTGTTCACAATCTCACCGAGTGGTTGTACACAGCGGTTTC
ILMN_1379842	0005700594	negative	permuted_negative		CAGTGGTCAACCGCTGGCACCGATGCTCTGACGCCACAGCTTTTGTGTCT
ILMN_1379630	0004050725	negative	permuted_negative		ACCTTGTATGCTGGGACCCAGGCGCCATCAAATTTTGACTCAGCCAGTGT
ILMN_1380189	0003940427	negative	permuted_negative		ACCACCCTCTCAGGGTGGCTGGCGAATGGCTCACTTTTATTGGATGCGCA
ILMN_1379716	0006400053	negative	permuted_negative		CGTGGATGTGTTCTTATCCTCCCGTTGGCGGACTGGCTCTGCATGGTTTG
ILMN_1379576	0006020050	negative	permuted_negative		ACGCAGTCACAATGGCTAAGACTTTCACAGACGCTAGACCTCAGTCTGGC
ILMN_1379998	0004670181	negative	permuted_negative		AAGAGCATAGTAGAGCCGCTGGGTGTGTTTTGGTGTGCAAGGGGCCGCTC
ILMN_1378270	0005720575	low_stringency_hyb	phage_lambda_genome:mm2		CGGACGTTATGATTTACCGTGGAAAGATTTGTGAAGTGTTCTGAATGCTC
ILMN_1379550	0000050164	negative	permuted_negative		ACGCAGAAAGGCGGACTTCAAGCGCAGATACTATGTATTCGTGGGAGTCA
ILMN_1379460	0005050102	negative	permuted_negative		GAGTTATCAATGCAATCTGAAGCTGGGCAGGTCACGGCGCTTGTGCAGGG
ILMN_1379436	0001980162	negative	permuted_negative		ACTGTGACTGCCGCTCCTCTGCCACAGCTTCATGTGATGGAGGAGAGCAG
ILMN_1380039	0003610086	negative	permuted_negative		TACCGATCCGACAGCACCTCCTAGGATAAACACCTCAGGGGTTCTGTCTG
ILMN_1379455	0003520091	negative	permuted_negative		ACCACAGTGTGTGAGTGGCAGACGACGGAAGAAAGCAGCTGGGATGAAGG
ILMN_1380357	0001400341	negative	permuted_negative		AGGGAAACCAACCTTGAATATTGACCAGGTATGGTGGGCGCGCAAAACCA
ILMN_1379511	0005270619	negative	permuted_negative		TCAAGCCGGGGATACTCTTCCCTCCGGGTTCCTAAGGAGGGGTTGTTAGC
ILMN_1379948	0002370397	negative	permuted_negative		AGCAGTCTTGGTAAGAGGGGAACGGGCAGAGCCAAGCGCAGAGGTTCGAG
ILMN_1380143	0003850593	negative	permuted_negative		ATTCCCCCCTGTGGGCATCTCGGAACAAATGTGGATACTTTCAGGGGCGT
ILMN_1379921	0006760577	negative	permuted_negative		CCTGCGTCATGTGTTGGTGGTCCAACAGCAGGATGAGTATGGTGGTCGCA
ILMN_1379661	0001090647	negative	permuted_negative		AGAGTCGACTGACCGGTGACACAAGGCTTGATTACCGAGCACCGAGGCAT
ILMN_1380218	0006900129	negative	permuted_negative		GGTGTTGAAACTTGGCGCGGATTGGTGACCATTGGGCGGGATGAGCTAGC
ILMN_1380328	0000670450	negative	permuted_negative		GTATTGGAGGGACCAGCCTAAGCATTTCCCCCTAGTTCCAGAGAATCAGA
ILMN_1380017	0004480184	negative	permuted_negative		TCATGGTGGCTCTCAGGGCTTTCACATTCATGTCACACGCCACTCCGAGC
ILMN_1380195	0000540270	negative	permuted_negative		CTCGGGAGAGCTGATGAAGGGGATGCAGTCTAGGGGAGGAAAATTTGCAG
ILMN_1379589	0003440685	negative	permuted_negative		AGCGTTGTTGAGCCGCTGGAGTAAGCGTCACACTTCGTGCCGCTTCTTGA
ILMN_1380015	0004540037	negative	permuted_negative		GGGCAAAGACCACCACAATCAATCCTGCTCACGGGAACCAGCCACAGTCC
ILMN_1379645	0004590040	negative	permuted_negative		ATTCTGGATGGTCAGTCGGCCCGTATTACCTGCCGGGGTTTCTCTGCCTG
ILMN_1379858	0004480390	negative	permuted_negative		CTGAAGTCTGAGGGTCCTCAGCATGTGGCACAATGGAATACGTCCCCCGT
ILMN_1379983	0000520079	negative	permuted_negative		GTTGCCACAAGGGTAAAGGAGCTTCGTTCAGTCCAAAGGCGAGTGAACAC
ILMN_1379666	0006650372	negative	permuted_negative		AGCTGCCATCCGGATCGTTATGCCAATGAAGACACGCAAAAGCTAGAAGG
ILMN_1379388	0002810735	negative	permuted_negative		GAGGATCTCGAATGAGTCTCATGTGGGGGCATGCCCATCCATGGGAGCCG
ILMN_1380126	0005340253	negative	permuted_negative		AACTCGGCAGAACCCCCACAGGAGCACCCATGCAGATGCCTTTGTTGGAT
ILMN_1380087	0000610019	negative	permuted_negative		GAACTCGGTTGATCGCCTCGGTGCAGGTTGCCCTCAGCCCTCTGGAATCC
ILMN_1380024	0003140132	negative	permuted_negative		GCAGAAGAACACCCTACGGCATGCAAAGCACTCAAGTAGCAGCAGGCAGC
ILMN_1380152	0004070528	negative	permuted_negative		GTGAAGTTACAGGGTTGCCGTCGACAAATTGGCTAGGGCCTACGGTGAGG
ILMN_1379488	0006380010	negative	permuted_negative		TCGCCATGATCACACCACCCCGTGTGGGATGTAAATGACAGAGTGCCCCT
ILMN_1379502	0005390600	negative	permuted_negative		GATCCCTTTTCTGGCTCCAAGGCGGACCAATTGTAAGCGCGTGTGTCGAT
ILMN_1379847	0001690068	negative	permuted_negative		GGCCCATACGCTCCGGTGGGCAGTGTAACGCTTTTTCGTCTTTTTCTGCC
ILMN_1379638	0003840736	negative	permuted_negative		CGGTGCCCCCAGCAGCCTAGCAACATTACCCAAGCACCTTCGCCGAAAGG
ILMN_1380058	0002470538	negative	permuted_negative		GAAGGGCCTACCGGTTTTCTACCTTTCTGGCTGTTGCATGGGAACGGGAC
ILMN_1379709	0004150148	negative	permuted_negative		AGCCAACACGCAGACGTCAATGGGGACAGGAAAGTGAAGATCAGTTGGGA
ILMN_1380330	0005570601	negative	permuted_negative		TGTTCTAGCGGGCGTCTAACTCTTTCCTGTCAGGCGTCATCAGATGTCTC
ILMN_1379531	0001780056	negative	permuted_negative		GTAGGCAGAAGGATGCCAGACTTGGACTCTGCGGGTGATCCTGAGCGAGG
ILMN_1379557	0002970671	negative	permuted_negative		CAGGAAGAAATACCACGTGCTGAATGGCCGACCCGGGGGGACGTGAATCA
ILMN_1380208	0004210176	negative	permuted_negative		CATCATTTCCGTCAAACGCCTCTCTGTTCAGGAGACCCGACTGAGGGGCC
ILMN_1379622	0000940093	negative	permuted_negative		AGGGAGCCAGGGGTCGGAGCTATGTGGGAACTACTGAGAACGGGGACTAT
ILMN_1380134	0000460138	negative	permuted_negative		ACGTAGGAGTGTCTCGACGGGCCGTTACTTGGGTTTTTGAAATGTTTGGG
ILMN_1379909	0002640301	negative	permuted_negative		ACTAGCACACACCTCGCGAAGCTACTGGTACATTTATGGACGGATCTACC
ILMN_1379829	0006020722	negative	permuted_negative		GTCTGTCTTCTAGCCGGACATCACCTGAGACTCAATGAGGCGAATGACCA
ILMN_1380029	0006590609	negative	permuted_negative		GGCGCACATGGAGTGGTCCTATCATCCTAGACTGCAATAGCACTACTTCC
ILMN_1379897	0001240369	negative	permuted_negative		GGTCAGTAGAGCGGAGGAGGAACTCAAGACCTGTTCAGCCAGGTCAGTAC
ILMN_1379396	0003990333	negative	permuted_negative		GTAGGGAGATGGGCAAGATCAGCACCGAGAACCCTAAGAGGAACCAGGAG
ILMN_1379703	0000450152	negative	permuted_negative		GTCAGTGCAGATGGTTATTGCCTGGTGACGGTCCACACGCAGCTAGACGA
ILMN_1379755	0001230044	negative	permuted_negative		CCTAGTGTGGTCACGGCGTCATGACTTGCTGTGCTAGCGCTACAGCCCCA
ILMN_1379676	0003440156	negative	permuted_negative		GCAGACCTTTGTGGGCACCATTACAACTACATCTCTCACCTCCGTGACAT
ILMN_1379907	0007000050	negative	permuted_negative		ATCCTCTGCCAGGGCAAATTCAAGGTCGCACCCAGTACTTCCTGGTCGCG
ILMN_1380338	0004850288	negative	permuted_negative		AACAATCCCCTGCGGCCGACCTGGTGCGTAATCTTCCATTTTGCGGGGCA
ILMN_1379544	0002680070	negative	permuted_negative		CGCCTGATCACTCGCCGGGGATTGAGCTAACAATGTCGGAAGTGGACTCC
ILMN_1380006	0001340601	negative	permuted_negative		ACTGATATTAGCGGTCCACTGTGCCCTCTTTTCCATAGAGCGAAGTCTGC
ILMN_1379986	0005420242	negative	permuted_negative		TGGGTTCCGGCCTGGTCGCATTTCCAGGGCAGGTCGTTCTCTTCGCTGGC
ILMN_1379717	0000520465	negative	permuted_negative		ATCTGCGCTCAGGCCTCTTTCGGGTAATGTCGCAACTACAAAACCCCAGC
ILMN_1379731	0002640402	negative	permuted_negative		GGACGACCCGGGCCTCCGACAGGGAAACAGAAGCTGATAAAGGAGATGCT
ILMN_1379924	0001410278	negative	permuted_negative		CACAGCAAGTAGAGCAGATTCGACACCCTCCCGGGTGCTTCCACTGCATG
ILMN_1379885	0001850279	negative	permuted_negative		CGAGACTAGCGCGACGCTTGTACGCCTGCACAAATGTTTCTGAGGAGACC
ILMN_1379580	0003360112	negative	permuted_negative		GTCGGGAGTTGGGGGCACTTGTTGACGTTTCTCGTCTTTTCTGCTCCGCA
ILMN_1379483	0002810131	negative	permuted_negative		CTGTTAGCTCCTCAGTTGGAATGGGCTTTGCTGTTGGTGTAGTGGCTGCC
ILMN_1379469	0006900408	negative	permuted_negative		ATGGCTGAGCGAATGCAGCAAAGCTGGAAAAGCGTCGGCAGCTGCAGGCC
ILMN_1380335	0006370736	negative	permuted_negative		ACAGCTATGCCTGTCACTCGAGGAAGTCTGCAGGATCTAAATTGCTGGGA
ILMN_1379417	0001230706	negative	permuted_negative		AGTGGAGCCTTTTGGCAGGTGCCTGGGACAGGACGCTGTGGACGTACGAA
ILMN_1380129	0000060121	negative	permuted_negative		AAAGCCCATTTTTCCTTCGGCCCAGATGGTGGAGAAAACCTTTCCCCGCT
ILMN_1379893	0003130280	negative	permuted_negative		AACGCAACTACCCTCACGAGATCAATTGGGCTACCAGGAGGCTCCAGCCA
ILMN_1380079	0006110014	negative	permuted_negative		CATTCACGAAAATCCGTCAAAGGACCTTTCCAGCCGCTGGCTGTGAGGAT
ILMN_1380127	0001580717	negative	permuted_negative		GCGACACGGGGACGCGGAGTGTGGTTCTCTGTCGTATGTGTTGTGGTGAA
ILMN_1380065	0003290609	negative	permuted_negative		AGGGTTGGGGTCGTGATGAAGCTTTGACTGAGCTTTCAGGGTGTTAGAGG
ILMN_1380321	0004480400	negative	permuted_negative		GAGTGGTTTCTCCCTAAGAGTGGGGTTCAAGTTTAGCCGAGGGTAGATTG
ILMN_1379866	0005910181	negative	permuted_negative		GATGCCTGGGGAGAAGTTAAATGGGGGCTGGGACGGTGTTCTTCCTCAGA
ILMN_1379635	0004150500	negative	permuted_negative		CCCCAATCCATACTGCTGCTTTTGACATTGAGGCCCGCTTGGGCCCGTAC
ILMN_1379696	0002970722	negative	permuted_negative		GGCATATTCTGTGGGTCTGTGTTTCCCAAGTGGTGTAACCCGGTGGTACA
ILMN_1380113	0002060411	negative	permuted_negative		ACGTGGTGTACGCTGAGGCCGTGCTGTGGCGGGTTATCAAACTCAGGACA
ILMN_1379756	0000840746	negative	permuted_negative		GGAGATTGATGTAGGCCACGCGCCATTGGTATTCCTTTCTATCCCAGCAA
ILMN_1380323	0005390068	negative	permuted_negative		AGGGAGTGGCCAGTGTGACGGAGGTATGGAGACCATGGGCTGAGAAATGG
ILMN_1380050	0000610369	negative	permuted_negative		CTAGGACAGCTCTTCTGATTCAGCCCTGCAGAACTGCGCAGGTTGCCCGA
ILMN_1380163	0005860722	negative	permuted_negative		CCAGCCTCAGCATGACTTTGGTTCGGTCATCTCAGTGTTTTTGTGGGCCC
ILMN_1380242	0000940132	negative	permuted_negative		TGGGAGCGGTCGCGCGAACACCGACCAACTGCATCTAGAGAAAGGTAGCT
ILMN_1380108	0000130050	negative	permuted_negative		ACCTATTACCAACCCAGCCCTGCACACCCGTGAAAGACGGATCTACAGAC
ILMN_1380340	0001400156	negative	permuted_negative		TCGGAACAAGACCGCGAGCTGACCTAGGGCAGGAATAACGCGAAGATCCC
ILMN_1379507	0007100161	negative	permuted_negative		CCTTTCGTGCAGTTTCTGGGCTTCTGGGGCTCGGGAGGCGAGACGAACTC
ILMN_1379811	0001940204	negative	permuted_negative		TGGTGTAGAGGTCAGATTTAGTGCTTATTCCACTGCCCTGGGCCCTTGCT
ILMN_1379743	0001770333	negative	permuted_negative		GAAGCCATCGGGGGTCCACATTGTTGCCGGAAATTTGATGTCTGCTTCCC
ILMN_1380159	0003870132	negative	permuted_negative		TTGCTGAGTGTGCAGGTGAGATGCTGGCTCACACAGTCTAGCCATCACCC
ILMN_1379592	0006420725	negative	permuted_negative		GCAGGCGGGCGTATACTGATTAAGCTCCTAGGGGGACAAGGTGCTCAGTG
ILMN_1379582	0002690092	negative	permuted_negative		CTCCCTTCTCTTCAGTGTGACTGACATTGTTTCGAGGCTCAAAGGCAGCT
ILMN_1380225	0006200095	negative	permuted_negative		GGCTAGGCATGACCTTATCCCGGGAGAAAGGACACTCCCTTGTCTGAAGA
ILMN_1380178	0001400390	negative	permuted_negative		GCACTATCTTCCCTTAAAGTATCGTCGAGGGTGCACACGTTCGCTGTACC
ILMN_1380031	0006350215	negative	permuted_negative		CACCAGGATGAGTGTCCTACCCTTGTAAAAGCTGGAGCGACCCGTGACTA
ILMN_1379720	0001230524	negative	permuted_negative		GGGCCCACTCAGACATGATGGACAGATTGACCCAGACTTGGGCCTAGTAC
ILMN_1380171	0004120239	negative	permuted_negative		GTGGCACAGGCTTGGGGCCACTCTGCTGACCAGTGAGTGCTCTAGTATCT
ILMN_1379868	0006980019	negative	permuted_negative		CTGCCGGCCGCCCTACTGGTGCAGACACATTGACAGAAGAGGAATCCATG
ILMN_1379563	0000380301	negative	permuted_negative		GGGACTGCGATGCCGGCCTCTGAGCACTCCCTAAATCGACAGCAACGGTT
ILMN_1379954	0006980551	negative	permuted_negative		ACTCAAGCCAGGCGAACTAGGGTCCTCGGGGATGTGTAAAGGAGCAGCAG
ILMN_1379519	0001410332	negative	permuted_negative		GGTAGGAGGTAGTGGGAACCCGCTCAGTTGCACCCTGAAATGAGAAGTCA
ILMN_1379790	0003830369	negative	permuted_negative		GAGCTTTCTCACCTAGGGAGGTGCACGGCCTGGTCCACTCACCTCATACA
ILMN_1380107	0002340075	negative	permuted_negative		GAGCAGGCTCAGGAGCAAGAGCCGACTTGCCGACAAGCTGTGGAGAGTTT
ILMN_1379992	0006770465	negative	permuted_negative		GGGGGGTTGTTTGGTGTGGTAGGAGAGTGCAAGGCGGTGATGTGTTCACA
ILMN_1379686	0007050647	negative	permuted_negative		CAACCTCCAGGCGCAAAGAAGTGTCTGAAGCTGAGAACGTATGATCAAGC
ILMN_1379475	0002680600	negative	permuted_negative		AATATGTTTGCTGGAAATGGTCAGCTCCCTTGGGGGAGGACTAAGCACAG
ILMN_1379609	0004780673	negative	permuted_negative		TGTCTGTGTGTCGAACCTGTGTGCACGACTTGGGTGGCCCGGTGAACTTT
ILMN_1379393	0001580333	negative	permuted_negative		AAGAACCTGTTCGGGATGCCAGCTAATCCTACGGCGACATTAAAGGCGGC
ILMN_1379740	0004570110	negative	permuted_negative		AGATGCCACAACTCCCATACACACATACCCGTTGCTTACGCGGAGCACAA
ILMN_1380130	0003190136	negative	permuted_negative		TTGAGACAGGGCTTGTTCGTGCATGTCTGTGCAACAGCCTGTGGCTGGAG
ILMN_1380146	0003710463	negative	permuted_negative		GCGGCAGATGATGCTGTAAATTGAGTAAGCAGAGCGGAAGACCTCCCCCC
ILMN_1379778	0005340193	negative	permuted_negative		AGTAAGTCCAGGCCTTTCCAGGGAAACAGGGGAGCAACCTTCTCTAGTTG
ILMN_1379625	0001410438	negative	permuted_negative		AGTGGACCTGTCGGGACCAAGGCTATCATTGGTGACAAAGTTGTGGGTGA
ILMN_1379427	0005420372	negative	permuted_negative		GTTCGGAATACGAGCAGGTGTTCAGGTGATTTTGACTCATTGGAGGCAGC
ILMN_1379840	0003830528	negative	permuted_negative		CTTCTCTTATAGGGTGAGCCGTGGAGGCCCTAACTTCTCTCCAGCTTCCC
ILMN_1379618	0001240035	negative	permuted_negative		GTGGCTATGGTGGCTGCCAAGCTTTACCTTCTTTCGATGCCCTGTACACA
ILMN_1379839	0006200538	negative	permuted_negative		TCATCCATCTACGCCTTCGGCGCATTAGGTTAATCACAGCATGGGCTTTG
ILMN_1380364	0000940672	negative	permuted_negative		TAGGGGGAGCAGATTATTCTGCCGCAAGGCAGTCAGGACATGGGAGGGCT
ILMN_1380003	0005900739	negative	permuted_negative		GCCTACTGATCCCAGTTCTCGGGGAATGTGTCGCATGAGAACCCGAATAT
ILMN_1380140	0004560019	negative	permuted_negative		TGATAGCCACTAGGACACTGCGCGAGAGCGCAACTCATGACCCTGCTAAT
ILMN_1379405	0004230128	negative	permuted_negative		TGAATTAAACCCGGCACGCCGGGAACGGTCCGGTGCCTCTTTCTTACAGG
ILMN_1379724	0006180181	negative	permuted_negative		GGAGAAGAGGTAGGGCCAGACGACCTAGGAGCGATGCTCAAGAGTGATCC
ILMN_1379710	0005270301	negative	permuted_negative		CACCGCAGATACTATGCCTACCCAAGGAGGAGGGCCGCTACAAGCTGCAT
ILMN_1379871	0007050113	negative	permuted_negative		CACACAAAGGGTCAGAAGTTGCCTCTTGGGGAATTAGTGGCGGAATGCTC
ILMN_1379819	0000070398	negative	permuted_negative		CTAGAGATTGCCCCTCTAGTCGGGTGTTTAGTGTAACCTCTGACGAGTGA
ILMN_1379420	0005050576	negative	permuted_negative		CCCGGACTTAGCGCTCGGACTGGCTAGGACCCGAACAACACTAAGAAAGA
ILMN_1380374	0006510270	negative	permuted_negative		GAGTAGTAAAGCCACGACCTGGCCACCAACAGTGAAGAGTATGAAGCTGA
ILMN_1379764	0000380014	negative	permuted_negative		CTTAGTTCAGTTGCAATTACCCAAAGCAGGACCTGAGACAGGCAGCTACC
ILMN_1380190	0002370091	negative	permuted_negative		CCAGCAGACATACCATGGGTATTCCAACAGAAGGGGGACGGAGGCAGGGA
ILMN_1380122	0002810161	negative	permuted_negative		TGAGCACCGCAGTGCCATTGTTAAGGGATCACAGCCTGAGGGAGTGCGAG
ILMN_1380118	0006940095	negative	permuted_negative		AACCCTCAGCAGGCTTTTAGGGACTCGGGTCCCATTCACCTATGCTCTGA
ILMN_1379447	0004120575	negative	permuted_negative		CTGGAACCCTGGTGCTTCCTGGTGGGAAGGGAGGAGAGAGAAAATGTCCC
ILMN_1379584	0002120369	negative	permuted_negative		TACCAATTGGGGGCACTCCAGTCGGGGGGCACGATGAAAACACAAGCCAA
ILMN_1379435	0006980164	negative	permuted_negative		CATAGCCTGAGAGCAGACCCCTCCGGCACTACACAATCCCGACTTGCACT
ILMN_1379600	0005220390	negative	permuted_negative		TGAGTGCATTAACGATGTCTGGCTTCGCAGGTTGCGGGGTCGTGGGTTTG
ILMN_1379470	0000630180	negative	permuted_negative		AGCCACAGCCTCGGATCAAAGGCACGGCATGTTGTTCATGGCAGCTGCTG
ILMN_1379465	0007050471	negative	permuted_negative		AGTAGGCACCATACCCATAGTTAACCCTGAGGCCAGGGTACCTCGGGCTC
ILMN_1379591	0002570112	negative	permuted_negative		CTGTACCATTTGGAAGTGCCCAGAAAGCCGGTTAGAGCGCGTTGCCAGTC
ILMN_1379841	0003830270	negative	permuted_negative		AGTTTCCTTCGGTGCGAGCGTAGAGGCCTTTAGACGTTGTCCATACGGAT
ILMN_1379606	0001740050	negative	permuted_negative		CTGGAGCTCATCGGGCATGGCACCCAGAATTTGGCACACCACAAGATACC
ILMN_1380343	0003450520	negative	permuted_negative		ACAAGACCAGTCCAGACCAAGTCAACAGCTTATAGCTCTGGTCCAGTGGA
ILMN_1380008	0005690292	negative	permuted_negative		CTTGTAGAATGCGCGGTAACGACCCCCCCTGCCAGAGTTGTTCTCTATGG
ILMN_1379573	0002940520	negative	permuted_negative		TTCTAGGCCCCCGTGCAGAACGGTGTATGTAGTGCTTTGTTTGTCTTCAG
ILMN_1379481	0004060647	negative	permuted_negative		AGGCAGTGGTAGCAGCTAAGCTTAGCATCACCTGGAGGCCTTCCGCTAAT
ILMN_1379389	0003840603	negative	permuted_negative		AAGTGCAAGAGGGAGGGGGGATGAACAAGGTGCCAAATGTATGGGGGGGG
ILMN_1380072	0001240164	negative	permuted_negative		GGCTTTAGAGCCTTACAGGAACCTTAACCCCGGGCCCGTGAACCTTCTCC
ILMN_1379656	0006100739	negative	permuted_negative		TTTTAGTGACGGGCCCTTATGGGGCCGCACCTGAGGTTACTAAGCCTGTT
ILMN_1379664	0000780253	negative	permuted_negative		AAACAAGGTGGCGCTAGCGCGCCGCACTAGGACGTAGCAAAAGAGTGATA
ILMN_1379903	0004850193	negative	permuted_negative		GTAGTGATAGCGAAATGGATCGCAAACAGTGGGTCCAGCTTCTTGAGCTG
ILMN_1379813	0003840086	negative	permuted_negative		TCTGGATACCCACCGCGCCAAGCACACACGTCTTTCAAGGGTTCATTCGA
ILMN_1379722	0001990162	negative	permuted_negative		TGTAGGGGGTGCTCCAGTAGCAGGCCTGATCCACAAGAACTTAAGGCAGC
ILMN_1380205	0003610377	negative	permuted_negative		CTCAACCCCCTTCAAGTGAGCCCGCCTCCAGTAACTATAAGGAAATCGGC
ILMN_1380360	0005360114	negative	permuted_negative		GCTCTGAGTGTTGCGGACGCAGGTTACTTGTTGACTCGAACTTTCAGCTA
ILMN_1380156	0004200546	negative	permuted_negative		TGAATGAGAACTCTTGGCCCCGGCTCCTTTCACAAAGACGGTTAGCTTGG
ILMN_1380233	0001570546	negative	permuted_negative		TGCTGTCCTGGCTCCAGAACAAGCCCGAGCAGATCGGAGGACTTAAGAGT
ILMN_1380047	0001230403	negative	permuted_negative		CATCCTCGCAACGGGTGCCATTCCACACTACCAGCTCTTCAAATGCCACC
ILMN_1379794	0003360377	negative	permuted_negative		TGAGCTCCCAAGCAGAGCGCAAGATTCACTACCCTCTACCATTCGGATCA
ILMN_1379381	0005570687	negative	permuted_negative		GAGCTATACCCTGCAAAACTTCCTAGTGTAGCGCGTTGGGAGGTGCCACC
ILMN_1379941	0002510601	negative	permuted_negative		TTTGGCAAGCAGCAGCTCTTGCGGCTTCATTCGGTGAGCATTTCGACCCC
ILMN_1380226	0002120408	negative	permuted_negative		TGGAGGGAACCACTTGTACTTTCTTTGCACCTGTAGCGTTCTTCCACTCC
ILMN_1379888	0003170706	negative	permuted_negative		TCTGCAGACGCAGCCGCACCTCACATTAAGTCTGCAGTGCTCATTAGGAT
ILMN_1380026	0001740026	negative	permuted_negative		CAGGGAACTCCTCAGACAATGGCCAGGAACACTATGATCCCGTTTTAAGG
ILMN_1379477	0001740452	negative	permuted_negative		GCATGTCCCCAGACCCAGGGTAGAAGTCCGGAGCACTTAGAGAAGCGACA
ILMN_1380100	0002850577	negative	permuted_negative		GAAGAACCTAGCAGTCTCGGCAGGGCGGTGGCAAACCATAAAGAGAGTGC
ILMN_1379857	0000870400	negative	permuted_negative		GGCACTTGGCTTGATGGGGCAATAAAAAGCCTGTCAGAACCACACTTGAG
ILMN_1379925	0005900180	negative	permuted_negative		AGTAGCCAACGCGTATGGCCTTAATCCAGCCAGCTGCCAGATGCTGTCCC
ILMN_1379773	0004070129	negative	permuted_negative		CCCACTACTCTTCCTTGCGATTCGTGCCAGTGTTCTTGTAATGTTCGGGT
ILMN_1380010	0001770128	negative	permuted_negative		CTCTTGGTGTGATGGTCACCGACTGGTGCACTTGGAGAATGGTGGGGAGC
ILMN_1379978	0005570537	negative	permuted_negative		ACCAGGTGGGACGGTCCCACAGGATTGATGTGTAGCCGTGACCCTGTAAT
ILMN_1380117	0000940097	negative	permuted_negative		AAGGGCTCTCCCAAATCTCGAGGCGGTTCCGGTCTTCACCGGGCTTTAGC
ILMN_1379641	0001980672	negative	permuted_negative		CAGACTCTGCCTGTGCTTCTTGGCACTTGCTTAGGCTCGAGTTTCAGGTG
ILMN_1379752	0005670075	negative	permuted_negative		CGCGAGGCTATGAGAGAATGAAAGCGCTGGTGCTGACACAGGGTCTGAGC
ILMN_1379856	0004120059	negative	permuted_negative		AGTTTTGATGACCCGGTGAACCCCTTACTGCGTGGGATGTTGAGGTAAGC
ILMN_1379564	0006450685	negative	permuted_negative		GGGCCCATTTTTCCTTCCTATTGCTTCGGTATGGCCCCTTTGGGGTTTAC
ILMN_1379800	0001450270	negative	permuted_negative		GCACCCGGGTACCCTAAGGAAGGGAAACAGAGCATCAATGACGAGTGTTA
ILMN_1379801	0006840114	negative	permuted_negative		AAGAGGACGAGTCCATGGTCACGTCTAGGACAAGTCACGGGAGTAGGCCC
ILMN_1380132	0003710487	negative	permuted_negative		GCTCATGCCATTAGTGGGGGTTCTTCGCCGAAACCTCCACAACGTGTCCC
ILMN_1379434	0004120458	negative	permuted_negative		ATGACCGTGTGCAGGCTTCTCCTGGGTCCGCGCGTAGAAAACCACCTAAG
ILMN_1379410	0001090471	negative	permuted_negative		AGATTTGTTACAGGGGTCTCTACTGGTGCATGCTCGGCACTCCTAGGGGC
ILMN_1380009	0000380129	negative	permuted_negative		GTCGACAAGACAGACAAAACAACGTCGGGATGACAGAAAAGGTGGCCAGC
ILMN_1379615	0006100403	negative	permuted_negative		ACCACAAGAGCAGCTCCCCTAAACAGAGGCCATGCGCTCACACATAGGTC
ILMN_1379679	0004810059	negative	permuted_negative		CTAGGACCAAGGGTGCAGGGATCTAGGTGTTTGACCAATATGAGAGAGAC
ILMN_1379539	0003870148	negative	permuted_negative		GGGAACACCCGGGCAAGAGTACCGGATGCTGAAAGATTTGGTGCGTTTGT
ILMN_1379844	0006380142	negative	permuted_negative		AGGTGATGTCCTGCTGAACCACCGCTTGTGGTTCGTGATGCGAGCGAGAG
ILMN_1378260	0007000347	high_stringency_hyb	High_GC_sequence		CCGGTCCCGGCCTGAGAGCCTCGAGGACGAAGCGGATCCGTATGCCGGAC
ILMN_1379768	0002940332	negative	permuted_negative		CTACTCGAACAGCACAGACACCAATTGGGTCCGCGCATTGTCAGCTAAGA
ILMN_1379968	0003840133	negative	permuted_negative		CTGCCATGGGTCGTAAGACCTATCAGGTCTCCTACGGATAGTCCGCCCCC
ILMN_1380083	0006620139	negative	permuted_negative		GCTAGCTCCCGTCTTGTCATCTCCTGTCAGGTGTGCACCATTGATCAGAC
ILMN_1379988	0000940091	negative	permuted_negative		GATGGTCACGTCGGCCAAATGCGAATCAACATTCTCACGCTCGGCCTAGC
ILMN_1379958	0000520053	negative	permuted_negative		TTAGTCATGACGGCCCGCATGCCAGATTCACTCGCTCTGTAAGATCCGTG
ILMN_1380139	0004540041	negative	permuted_negative		TGTCCCGCCTGTGAAAGGTGTGGCCCAGCGCGAAAGAGTCATTGGGACTA
ILMN_1379920	0003780279	negative	permuted_negative		TAAGGTCTCCAGATTGTGACACTCAACTGCCAACCCAGGACCCAGTCCCA
ILMN_1379400	0007100594	negative	permuted_negative		ACCTGTGATCATCGCGTTTTGGTGCTGGACCTAGGACGGCTGAACTCGTT
ILMN_1379781	0002900148	negative	permuted_negative		AGTCACCTCTCACACGACATCGGGCCATACAACCTAAACAGAGAGCCGGA
ILMN_1378265	0005890068	labeling	pheA	pheA	CCGCAGGATGATCAGTCCGGGGCGCTGCATAGAGTGCTGTCTGCATTTTC
ILMN_1380356	0002350176	negative	permuted_negative		TTTCCGAACGGCCAGATGAGTGCTCCTGCAAAACTCACGACCCTATTCTT
ILMN_1380089	0005860452	negative	permuted_negative		TGATGGCTTGGCCCCCGTTGGGGTGCTGGGAGACTAGTACACTAGGTACT
ILMN_1380166	0006110279	negative	permuted_negative		TGGCTGTGTTTTGTGCCCATCGGCAATGATGGCTCATGGAATAGCTGCTG
ILMN_1379953	0005700735	negative	permuted_negative		AGAACCCCTTGAGGGAGGGGTCTTCTCATACTGCAGGAACGGAGGTCATT
ILMN_1379547	0004150600	negative	permuted_negative		CTGCGTTAAGGACGCTCTTTCGTGTCTGCTAACCGACCTTCTTGCCATTG
ILMN_1380095	0002510048	negative	permuted_negative		GAGCTGAGGGACGGGGGAAGTAAGGAGAGTTACCAGGCAAGGACGTGTAC
ILMN_1380170	0006220091	negative	permuted_negative		GGGAACCAAAGCGATACCTGCTTACCTCTCCCTCTACGGATGAGGGCACT
ILMN_1380183	0004010373	negative	permuted_negative		TGGAACACACTGTAGCTGGGCGGCAGGCCGGGCAGATTAATGGGTAAACA
ILMN_1379806	0003800021	negative	permuted_negative		TCTGCCCTAGAGAGACAAGAGAGAACGCGGAAGATCGTAGATCCGAAACA
ILMN_1380056	0003390524	negative	permuted_negative		GGTGTAAACAGTGGTGAACAATGACACCTCAACACCGGGAACCATGGACA
ILMN_2038786	0003290537	cy3_hyb	phage_lambda_genome:high		AATTAAAACGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGC
ILMN_2038786	0003290537	low_stringency_hyb	phage_lambda_genome:pm		AATTAAAACGATGCACACAGGGTTTAGCGCGTACACGTATTGCATTATGC
ILMN_1379409	0002320458	negative	permuted_negative		CTCCACAGCAGTCAACATCTGCACTGGGGCTTGATGGGCAACGCCACTTG
ILMN_1379987	0003830632	negative	permuted_negative		CGCGACATGAACATGGCGGGCATTTCTTCCTGGTCTATGGCCGGGACTAC
ILMN_1379588	0003710450	negative	permuted_negative		CTGAGGTAAGCTGTGTATGGCTCCAGGACGACTTCTTATCCGACTGTAAC
ILMN_1380371	0001660022	negative	permuted_negative		GTGGGTAGAGCTCCAAGGGTGGAGAAAGACAACCTCAAAACTCAGGTGGA
ILMN_1380175	0006130215	negative	permuted_negative		AAGGATTCCCACGGGGGGCAATTCCTACAGGTCCCAAATCCGACAGAATG
ILMN_1379529	0000060128	negative	permuted_negative		GCACGTCAGGACAAGACTGGAGGACTCAACCTCGGGCATGGGTGGAAAGA
ILMN_1380038	0006550288	negative	permuted_negative		GCCCAAGAAAGCGACCTGGGGCTAGGGTGCTTATAGAGGCTAAGATCAAA
ILMN_1379505	0001500195	negative	permuted_negative		AGAGCACAACTGATCCATCTGCTATCGACCACACCAAGTGGCCCAGCGGA
ILMN_1380368	0005050538	negative	permuted_negative		CTCGCCAAACACCGCATCGCACTCTGAGTAGTCCTGGGTTGCAGTGCAAG
ILMN_1380210	0002690347	negative	permuted_negative		GGCCTACGAAAATTCCGCTTCCGTTGTGCCGCGGTTCCCAGTGGCTCTGG
ILMN_1379682	0005420332	negative	permuted_negative		TGCCGGGGTTTGCTGGTATGCCCTACCCAGTCGCTCAGAAGGAGAATTGG
ILMN_1379577	0006860082	negative	permuted_negative		CTGATTTCTTCAGGAAGAACACTGGTCCGTCCAAGAGGCCAAGGCCAGGG
ILMN_1379939	0006130438	negative	permuted_negative		CTTGCGGGCGGGAAAGACACCCGCAGCCAGGTGGCAACAACGTCGGTATC
ILMN_1379834	0000510139	negative	permuted_negative		GAGATGAGGAGTGCCGCAACACTCTGTAACTGAGGGAGTGAGAATGACCT
ILMN_1379691	0001660601	negative	permuted_negative		CTACACTTTGGCCTCGGGCGCCCATGGTAGTATGTCCAGTGGTGATTAGG
ILMN_1378239	0003800138	cy3_hyb	phage_lambda_genome:low		TCTGTCACTGTCAGGAAAGTGGTAAAACTGCAACTCAATTACTGCAATGC
ILMN_1379729	0005890170	negative	permuted_negative		CACGGGAATGCCGGTTTTATGCCAAATTTGGCTGGGTTGAGAAGAGGAGC
ILMN_1380092	0004050484	negative	permuted_negative		AACACAAGATGCGGAGCTCCTGGCCAATGCTATCAAGGTGACTCAGTCTT
ILMN_1379390	0000520170	negative	permuted_negative		TTCCACTTCTGACAGGAGTGGGCTGCTGCGGTCTCCACGAATGTCTGGCT
ILMN_1380151	0001740711	negative	permuted_negative		ATGTTGCTCCCTGAACTGCCGCGCAACATAGAAGGGTGAAATAGTGCCTC
ILMN_1379678	0001170735	negative	permuted_negative		GTGCCACTGGCACAGTAGGTACTAGGAGGATGAAGCAGAAACCACCCGGA
ILMN_1380133	0000940288	negative	permuted_negative		GGCTGGCCTACCCCAGCTGGACCACTCTGAGAAGAATGCTTTGATTTCTT
ILMN_1379837	0003360020	negative	permuted_negative		GAAGTCGCCAGCTTGGGACTACGCCACACGCTGCACAAGAAACAGGAGTC
ILMN_1379700	0000360082	negative	permuted_negative		CAGAAATGACCTCAGCAGCCACGGGGATACAATGAGGAGAATGAACCGTG
ILMN_1380214	0006770100	negative	permuted_negative		CTGTTCTACCTGGGCCTCCTCGCCAGTATCTGAGCTGTGCCGCAGATGAC
ILMN_1379596	0005900215	negative	permuted_negative		GACGCAAGCGCCTAAGCCGCGCAGAAATTGGTTTGTCAGGGTCTTCACGG
ILMN_1380246	0002340441	negative	permuted_negative		AGGGCTGGCACTCCGATAAAGAAACAAGTCGATAGAAAGTTGGACCTCCG
ILMN_1379479	0000070575	negative	permuted_negative		GCCGAAGAACTCGATGCTGAACCGGTTCTAGGCAGGATTTCATGTCCACA
ILMN_1379774	0006020152	negative	permuted_negative		CCTGCCTCTATAGTACCCTGGGCGAGCTTTTTTATCACGTATGTCTGTGC
ILMN_1379495	0006040066	negative	permuted_negative		CCTGTTAGCTTGCAGGCATGGAGGTTACGCCTCTAACGCAGCCAGGCACA
ILMN_1380247	0003710138	negative	permuted_negative		AGCGCCATATATCACCCCGCCTGGATATGTAATTGGGGGTATTGTTGGCA
ILMN_1379500	0000380707	negative	permuted_negative		TCTACCACCTCGCCCAAGGGACCCTGAAGTGAGAAAAGTCATTGCCAATC
ILMN_1379901	0005270685	negative	permuted_negative		GCATCAGCAGGGGTTGGATCGTGAAGTGGAATTAGCTCCGGCAAGCGGAG
ILMN_1379951	0006220288	negative	permuted_negative		TGGGGCGCTTCCGCCACAATTGCCAAGACTACATGGGACTGAGTAGTGTG
ILMN_1379610	0001340167	negative	permuted_negative		CAATCGCCTGAGCAAAAAATGCCCGTCACCTGAGATCTTCGACTCCAAAC
ILMN_1379910	0004590161	negative	permuted_negative		AGGAAAGTGAGCCAGGGGCATTGACGTGTGCAGCCCTCGAATCTAGAAAG
ILMN_1380068	0007050563	negative	permuted_negative		ATGAGATCCCGTCCCACTAGACTACAGAAATCTCCTGATGCAACGCCCGG
ILMN_1379660	0006450279	negative	permuted_negative		CCCCATGGCCCCAATGGGCCTTGGGTCAAGAACCTCAGATGAGACCAAGA
ILMN_1379456	0002190273	negative	permuted_negative		ACGCTGGAGGGTGAAGATACGAGCTGACTGTGCGGGCGAAGGTTATTGCC
ILMN_1379702	0001780408	negative	permuted_negative		GTAGGAGCAGTCACCACCGGGACGGACCCACCCGGTCCTTAGCTACTTGA
ILMN_1378264	0002810673	labeling	lysA	lysA	GGCCGTTCTCTCGTGGGAGACGCAGGCACAACTCTTTATACGGTTGGCTC
ILMN_1380250	0001690176	negative	permuted_negative		TCATACACATAACACAGCGGGCCTTGGGAGCAGCCGAGAACTCTGGAGAC
ILMN_1379779	0003060673	negative	permuted_negative		CGACTCACGAGACTCCAAAAAAGCCCTGCAACAACCTCTCTAAAACCGCC
ILMN_1379957	0006660075	negative	permuted_negative		TTCGGAGTGGGCTTTCTATGTCTGGGCTAGTGCTGCGGCTGTCCACGTTC
ILMN_1380076	0002060040	negative	permuted_negative		GACGGTCTGCAGTTTCGGGAGGTGAACGGCACAGGACCGCGTAATCGCGC
ILMN_1379432	0004480377	negative	permuted_negative		TGATGAAGCCAGATCAATCCAGCTCGTTCTGGGGGAAGCCCTGTAGGGCG
ILMN_1379872	0004760092	negative	permuted_negative		TTTGAAAAGACACCGAGGGTCCTAATCACCCACACAGCAGTCTCGGATCA
ILMN_1379424	0004760347	negative	permuted_negative		AAGAGGGTGAGAGGGCCCGGGGTAAGTGCACAAGAAGATGTTCGGCAACC
ILMN_1379853	0006110301	negative	permuted_negative		TCTGGATGATGGCTCACTTGACTATGCCCAACAGGCCGCGAGTCCCTGCG
ILMN_1379443	0003450438	negative	permuted_negative		CGGCCCCTCGATGCATGGGGTTGAGGCTCAAAAAGGAACCAATAGGGTGA
ILMN_1379612	0004050450	negative	permuted_negative		AGGAAGATGCCCAGGTGTAATGGAGGATGAGAACGCGGAAGATGGGGAGG
ILMN_1380074	0005860609	negative	permuted_negative		TGGACACCATGCCCCAGGGCAGGCTGAATTTCATCGACAGAGACAGTTCA
ILMN_1379982	0005360601	negative	permuted_negative		GCCAAACATCTGGGGACCAATGGTGGGGCTAATGTAGGCCACCAGTGGGT
ILMN_1378269	0003130239	low_stringency_hyb	phage_lambda_genome:mm2		GAAGCATTCAGAGCAAATGAGGCAGCGTTGGTGTAGCACGATAATAATAT
ILMN_1379733	0003060497	negative	permuted_negative		GAAGAGCTGGTTATCGAAGCTGGGGAGTCCCTGCAGGAGAAGGGTTAGCA
ILMN_1379637	0006370086	negative	permuted_negative		AATGTCCTAGAGAAATGGAAGGCGAAGCAGAGGCACGCAAATCCGAGGCC
ILMN_1379894	0004010114	negative	permuted_negative		ATGTTTCCCATGGGGTACCCATGATGCAGCACGTGCCCTAAAGCAAGAGA
ILMN_1380014	0001500348	negative	permuted_negative		TCCGTCCCCAGTTGGGGGCCTAATGTCCAGTGGTGTGATGGAGTAGATGC
ILMN_1379649	0002690050	negative	permuted_negative		ACGAAGCTTCTAGTACATTGTGCTTGGCTTCCCCAGATCCTTTGCGATGG
ILMN_1380028	0002640019	negative	permuted_negative		CATTGCCCATGAGGAGACAGCGGACAAGGGAGGTTAGTAGCCAAACTGCT
ILMN_1380361	0000670113	negative	permuted_negative		CAATGATATGTCGTGGTACAGTGCACGGAAGTGGCCATGCTGTTGTGCCA
ILMN_1380000	0004920465	negative	permuted_negative		CATCTTCCGCCAAGCGAGGTGAGTTGCGCAGTCCAACCTTTGACGAGGGC
ILMN_1379546	0003130040	negative	permuted_negative		AAGAGGTCCAGAGTGACGCTATCATGAGGCTAGCCGCCCTGCAGCAGAAC
ILMN_1380253	0006350647	negative	permuted_negative		CCTAGTTGATGGGTCGGGGAGTGATGTGTGGTGTTGGAGAGCCGGCTGAA
ILMN_1380051	0001090739	negative	permuted_negative		GAGGTGAGACTATGGTCTAAGAGCCCGTCCAGCGTGAAGCTGATTTCGAG
ILMN_1379429	0001850619	negative	permuted_negative		CATTGGCGGAACAACGGAAGGGCTACGGCTTGGTCAGCCCCCATAAGTGT
ILMN_1380212	0003190524	negative	permuted_negative		GTGACAACTGAACCAGCCGCGGTAGGGGGTCTTTTAAGTTGACAGTGGAC
ILMN_1380241	0005290113	negative	permuted_negative		GACCTTCTGCTGCTGAGCTCCGCCTCGACCCCTACAGACATAGGTGATAT
ILMN_1379516	0006860707	negative	permuted_negative		CTCCGGCCTGTGCTCAGCGGAATATGCCTTACCTTCCTGAACCACACACA
ILMN_1379385	0004560707	negative	permuted_negative		TGAATTGGACTGCTACCTAAAAGCATACCGAACCGGCTATGGTGTGTGGC
ILMN_1380149	0003120093	negative	permuted_negative		TTTGAGTACGCGCTTCTTTTTCCACAATGGGCGGCCCAACCGCGGTTATG
ILMN_1379767	0003800372	negative	permuted_negative		GTCTTGGAATGTCATGAATGTCCCTGGTGCAAAGGCCTATGGCTCATGCT
ILMN_1380326	0005670494	negative	permuted_negative		CTGCTCAGAACTGCTTCAGGAAAGGTTGGGGCCAGAATGGAGAACTGTTC
ILMN_1379384	0002940725	negative	permuted_negative		AGTACAGGGGTTGTAGAGATGGGCCCAGCGGTAGATGCGTGGATGTTGAT
ILMN_1378271	0001090215	low_stringency_hyb	phage_lambda_genome:mm2		GCCCCGTATTCAGTGTGGCTGATTTGTATTGTCAGAAGTTGTTTTTACGT
ILMN_1379737	0003800176	negative	permuted_negative		GGGCCTCTGTGAGGGGGATGGTGCCCGTTGGTCTGAGGATGAATAGTTGA
ILMN_1379985	0000730500	negative	permuted_negative		AGAGGGGACATAGCCAGTCAGCCCACAAGGCCTGGTTTATAGCAGTGCAT
ILMN_1380342	0007000671	negative	permuted_negative		GGCGACATACCATCCCAGCCACCACTACTTCACCAGAGCCTCCAAGTATG
ILMN_1379906	0002450132	negative	permuted_negative		AACGAATCGACACTGCATCCCCAGCCGGGCAACTTCATAAAGTGTGCAGC
ILMN_1379876	0006420021	negative	permuted_negative		AGGTGGTGGAGTGCATTGTGGTGGAAGGAGATGATGGTGGAAAGGCAGCA
ILMN_1380023	0000630064	negative	permuted_negative		AGCTTCGATTGAGGGATGCCCCTGTCCAGAGTTGCAGGCCAGAAGAGGAG
ILMN_1379791	0002760446	negative	permuted_negative		CCACTCTCCGGAGCTAGCAGCAGAGCGTTCACCTCGACACAAGATCTTCC
ILMN_1379653	0001400184	negative	permuted_negative		CCAGCCAGATGTCAGGGCAGCTCTGCCGGTGAGTTTGACCCGCTGCCTTA
ILMN_1379633	0003850563	negative	permuted_negative		CCTGGTCATGTCGTCACAATAGCCATCAGGACCATCGAGCCACGGTGCTA
ILMN_1380145	0006290239	negative	permuted_negative		AAAGCAGAGCCTGTCATCGCGTGTGTGTCGGCTGGAGAACCCTCGAAGAA
ILMN_1380344	0002570736	negative	permuted_negative		AGAACACGGCTGCTGTCCCAACCTGTTAAAGGAGCTAAATCAGCGCCAGG
ILMN_1379532	0006370546	negative	permuted_negative		TGTGTGACTAACGCCTCTGTAAGCGAGTGTTCTGGGGTTCAACCGATCTG
ILMN_1380352	0002640707	negative	permuted_negative		GCACTATTCAGGGCATAGCAGCACAGCTGAAAGTCGCATCCCCAGAAGAT
ILMN_1379832	0002260440	negative	permuted_negative		AGGTTCGGGCTTCCCACAATCTCGATGCATTTGAGGTTCCTCCAGCAGTA
ILMN_1380105	0002640082	negative	permuted_negative		GAGTCTATAGTGGAGGAAGGAGCACTCTCGTGACACGCCTCTCTAAGCAT
ILMN_1379721	0003870670	negative	permuted_negative		TCAGGGGCCGGATCTAGCGAACATTGAGTGACTGAGAAAAAAGCGCTGAG
ILMN_1379551	0006660451	negative	permuted_negative		CATATGAACCGGCTTCAAACGCGGTCTCTCGGAGGTGAGAGACACCTTCA
ILMN_1379725	0002760110	negative	permuted_negative		AGTAGATCCGGCAATCACGAACAGTGCAGGTACACGGCTAGCTTGACAGC
ILMN_1379995	0000430021	negative	permuted_negative		ATGGATCTTTACGCACTAAGGACACACTTGGGGACATGTCCCGGGGCAGA
ILMN_1380200	0002100278	negative	permuted_negative		TGGACTGCCGAGCATGCACCTTCTACAGCTCTTACGTCCAATTCCAGAGC
ILMN_1379785	0006840433	negative	permuted_negative		CATAAGGTCGGAGCTGTCCTTAGGCTCTATCTGCACCCGGAACCAGGTAC
ILMN_1379406	0005690722	negative	permuted_negative		GCTACAAACGTCCCAAGAATGCCAGAATAGTCTGATGGTGGGACGCATGC
ILMN_1379414	0002680102	negative	permuted_negative		CTTGAGGTTAGCCATCTTTTCCGTGATTGATGTGTCTCCTGGGCCGGAGT
ILMN_1380186	0005550435	negative	permuted_negative		ATGCTGGTTTATCAGGATCGAAGCATCAAAGGGGCGCTGGGATTGGGCAC
ILMN_1379820	0002940484	negative	permuted_negative		GATCTGGTATAAGTCGGCTAAGCAGGGACCACACTCGTCGTCAAGATCGG
ILMN_1379571	0000510075	negative	permuted_negative		TACGAGCACGCATCTGCTCAGCCATGTCATGGACGGAGAGACCTTGTTTG
ILMN_1379533	0000510048	negative	permuted_negative		CTGGTTGTGGGGATCATGTAGGGGTTACTAAGCCTGGGTATTCTAGAGGT
ILMN_1380004	0002630044	negative	permuted_negative		TGAACGCTTACTGCCGGTATTCAAAGAGCCTGTCAAGATGAGTGCAGCCG
ILMN_1379543	0005080324	negative	permuted_negative		AGCCAGTTTAGGCAAGAGCCCAGTTAATGCCTGCAAGACTGCAGAACGGA
ILMN_1380365	0005860026	negative	permuted_negative		GCCCGTCAAATGGGGGGATTAGCCTTGGAGGACTGCAATTTCTGTTTGAG
ILMN_1380041	0002350138	negative	permuted_negative		ACCAGTACTGCTGCCCAAATTGCAGGGTTTAGGTGTACACCCAGTGGTCT
ILMN_1379732	0000730102	negative	permuted_negative		AAAGGTCTGGTGCAGGGCATGATGACGTCAGTACGCAGCTCTGTACAGGA
ILMN_1379882	0007100128	negative	permuted_negative		TTGAGTAGAGGAGGTCCTAATAGACCGAACCGTTCTTACCTGCCGAGATC
ILMN_1379695	0003170017	negative	permuted_negative		AGTGTGGGTTTAGGACACGGGGGTTAAACTCTGGTGCATGTCCATGTTTC
ILMN_1379757	0006290286	negative	permuted_negative		GGGGATTCCCTTCCACTTACGCCAGACAAATCTGTGCGGATAAACTCGGA
ILMN_1380148	0006840154	negative	permuted_negative		TAATTCACTCAGCTCCGTGTGCACAGGCCGGTTCGATCCTTCATCTGTGC
ILMN_1380194	0002630746	negative	permuted_negative		CAGACGGATCACCGGCATTTTGTAGCGTTAATCATCAACCGTCACACGGG
ILMN_1379865	0003060577	negative	permuted_negative		GAAAAGGTCTAAGCTATGTCCGCATCCGGACCTATAACATGGCGGGAGCA
ILMN_1380037	0002320347	negative	permuted_negative		AGAATACAATTCGGCCTGTTGAGACAAGGTGCATGGCTCATGTGCACCTG
ILMN_1380162	0003170010	negative	permuted_negative		GTTAGGCAGCAGAGAGACACGAGAGCCTTGGAATCAGAGAATTAGCTCCC
ILMN_1379667	0000460440	negative	permuted_negative		GAGACAAACCACGATTGCTTCTCAGCCCTGCGTTGCTTTGCCTAAGGATC
ILMN_1380088	0001770121	negative	permuted_negative		GCTGCTCGTGAACTAGCGATCAGGCATCTAGGTGAGTGATGTGGCTCCTG
ILMN_1379975	0005570152	negative	permuted_negative		CGGCACACCTCCCAAAGAACACCAGAATCCCAATCCAGCTCCCAAAAAAC
ILMN_1379825	0002900348	negative	permuted_negative		TGGCGGCCTTAAAACCGTTACCAAAACTCCACAATTCCAGTCTCGGCGGC
ILMN_1379989	0001090593	negative	permuted_negative		GACGGCGGCTGTGTTCCCAACGCAAGTATAGTCACGCTGAAAGCCTTAAA
ILMN_1379913	0001410427	negative	permuted_negative		CCACCCTTGTCAACCATAGTGCCTGGATGAGGTCGCACTCACCACCACAC
ILMN_1380217	0000360619	negative	permuted_negative		ACAGCTGAAGCCGTCCCATTCCGTCTGAATCACCCCGACCCACTGCTTGT
ILMN_1379852	0005690452	negative	permuted_negative		CCGGCCCATCCACTCAGCAATTTTCACCCATTAGCTCAAAGCTATTCGGC
ILMN_1379497	0001500670	negative	permuted_negative		ACGGAGTTTGAATCCTGCATGGCACTGTTGTCTACGCTGCGACTCTGCAC
ILMN_2038787	0005390538	housekeeping	housekeeping	GI_28460695-S	TCCCTAACACCTGCCACCCCAGTCTTAATCAGTGGTGGAAGAACGGTCTC
ILMN_1379810	0003130398	negative	permuted_negative		CAGATACATACACTGCTCGGGGTCTTGTGCTCGCATCTGGGCCAGCTTGT
ILMN_1379971	0000060142	negative	permuted_negative		TCAGTTAAAGCCGGCACTAGGAAAAGAGACTTCCTAAAGCTCCGCCTCCT
ILMN_1379719	0005890100	negative	permuted_negative		GGGCTAACCCAGGTGCCCCAGAGGACCCGGCAAGGAGAAACCCTACACTG
ILMN_1379944	0006840603	negative	permuted_negative		CTATGTAGAAATCTGATGTGAGGTGCCCAGGCATAGAGAGTGGGGTTGGA
ILMN_1380057	0003450427	negative	permuted_negative		TTGCGGGCACGCACTTGTCCTATGCTGTTGCATCACATTGGCCCAGATCG
ILMN_1379937	0006510731	negative	permuted_negative		GCCTTCCACCTCGAATAGACAGATAAAAGACTACCGCCATGAACCGCCAG
ILMN_1380346	0001850592	negative	permuted_negative		GACAGACCAGCAGGTGGTGTGACTTTGGGTGGGGCGAGAATGTGCAATGT
ILMN_1380036	0003850647	negative	permuted_negative		TGACTCACAAGGCGGCTCCTGTCCGTGGCAATCTGGTGGTTATCAGAACT
ILMN_1379504	0001740458	negative	permuted_negative		CTGGCCGGCTGCCTTGTACCACATTTTCAGCAGGTAGTGAGCGTTCACAA
ILMN_1380204	0004050372	negative	permuted_negative		AGTAGAAGACACCCTTTTGTTGCCAGGTGGCCGGCTTCTACATTGGAACG
ILMN_1380085	0005720398	negative	permuted_negative		TGGTCTAGAGCGCTCTCAGCCGCGAAGAACATACAAGTTGCAGCCCAAGA
ILMN_1379524	0004570121	negative	permuted_negative		GTGTCAGGAGCTTTCCAGCTGGGACAGGATAGTGGGGTGCAAGGAGGTTG
ILMN_1380059	0005420725	negative	permuted_negative		TTCCAATTGGCACCAAGTCATACTCCCAGTCACAGGCTAGATCTCCCGAC
ILMN_1379889	0003130411	negative	permuted_negative		CTGCGGAATCGTGGCCATACCAGTGCAAAGTAACTAGCCTCTGTTTTGGC
ILMN_1380101	0004560619	negative	permuted_negative		ATGGTCGAGTGACCCGGTCAGTTGTGACATCATCTCCTCCAAGGGTTCTC
ILMN_1379969	0000610528	negative	permuted_negative		CAACCAAGTGGCCAGAGAATCGTCCCAAATGTCCCCTTTGCGTGTCCCGC
ILMN_1380227	0002630593	negative	permuted_negative		CTGCATTCACAACATCTGGCCAACTTCAGAGCCATAGGTATGGAGGTGAC
ILMN_1379607	0004780066	negative	permuted_negative		TGCTCCGCTAGGGAAATACCAACACCTGCACAAAGACGACACCCAGCCTC
ILMN_1380184	0000630746	negative	permuted_negative		ACATACAATTCGGACCCTCAGTGCAACAGACAGGCGTGCAGCCTTCTAGC
ILMN_1380222	0003870204	negative	permuted_negative		ACTGAATGGTTAGGCTGAACAACCAGGTTCTGAGGTGTATGGGCGAGGGG
ILMN_1379699	0004810347	negative	permuted_negative		AGGAGCAACTAACGACCTCGCTGAGAGTATTAGTATGGCCGGGTGGAAGG
ILMN_1380322	0000780288	negative	permuted_negative		CAAGATGCAAGCGGAAGTATTGTGCTACAGAGGCCGTTTACCCTCCGCCT
ILMN_1380086	0001240056	negative	permuted_negative		GGACCTCGGCCCAGAAACAGTTGTCACCCTAGTGGCCTAGGTGAACGGAC
ILMN_1379762	0001940315	negative	permuted_negative		CATTGTACTACTGGGCTGATTCCTCCGCATGCGCCATTTGACCCCACTTT
ILMN_1379912	0005890168	negative	permuted_negative		AAACAGTGGTAGGGAACAATTGCGAGAATGAGGCCTCTGAACGGGGTCAG
ILMN_1379509	0002100471	negative	permuted_negative		GAGTTACCCTTAGTTCATTGGAACACCCAAAGGGCGATCCACCCGGCAGC
ILMN_1380191	0001450551	negative	permuted_negative		TCTGGTGGCGGTATGGGGGGTAACTTAAGCGCGGTAAGGGCAAAGGAGCT
ILMN_1380319	0006590537	negative	permuted_negative		ACCCCAGAGCCAGCAAAGACAGGGCAGAATGGGTAAATGCGGTGTCAGCG
ILMN_1379942	0002810066	negative	permuted_negative		TGTCTCCTGCTCCACTAGAGGGAACCGATGTCTGCAGCATTATCAAACCT
ILMN_1380044	0002650364	negative	permuted_negative		AGAGGAGCGGCCTAGGAGACGTCCGGAGCGAAGAGTGGCCTCATGGTGAG
ILMN_1379711	0006380110	negative	permuted_negative		GCTTGCTGACTTTCAGATCACACCACCACGGTATGTGTCCATGCGGTCAC
ILMN_1379651	0002260463	negative	permuted_negative		TTTGTACAGCCTGGGTATCCTGCCTATCACACAGTCATCTCGTCGCCACT
ILMN_1379698	0006100180	negative	permuted_negative		GGATCTCCATTGGATTAGCCACCATTCACGCTCCCTTTCACCTACCGTGG
ILMN_1380131	0001980397	negative	permuted_negative		GAAGTTAGGACACCTCCATTTTGGCTGGCAGCTTGCCTGGAATCAGTATC
ILMN_1379431	0007040154	negative	permuted_negative		CGACGTCAACATGTACTCCTCCTGGACTGCATCACCCACAGCTGGACTTG
ILMN_1379670	0003520041	negative	permuted_negative		GCAGCGATTACCCAGAAGAAGCGAAGTTATGGCGACTGTTTGGCGTTGCC
ILMN_1379908	0004060739	negative	permuted_negative		AAACGTTCCGAGCTGGTCCTCGCCATTACCATCAGTTCGCTTGGGTTGCT
ILMN_1380239	0004810092	negative	permuted_negative		CTGTATGCTGGCAAAGTCAGAACGTCGCCCAGACTTGCGAGCCCTTCATG
ILMN_1379775	0002680538	negative	permuted_negative		GGGCCATTATGCGTTCAACTTCCAGGTGGAGATTGGAGGCTCAGAAACAG
ILMN_1379994	0002190286	negative	permuted_negative		CGTGGGGTCCAACGATATGTGCGAGACCTATGGGAGATAAAGAGCTAACC
ILMN_1379663	0003440400	negative	permuted_negative		AATCCTCAGAAACCACAACCAGTGAGCCCGACACACCTAGCCTGGAGCCT
ILMN_1380080	0001170161	negative	permuted_negative		ACCTGAGCAGCTGAGGTTAGGCACACGTTAGGCCACTCGTGCTACTGGCT
ILMN_1379821	0002940471	negative	permuted_negative		ATCGGTCACGTGGGACGGAGCCTGAGCTCAGAAGGTTGCATTTTCCAGAG
ILMN_1379464	0006100338	negative	permuted_negative		CAGAGAACAGAGGACTTCAGAACTCCCTTTCTCCCAGCCGGAGAAACGCC
ILMN_1379822	0006020711	negative	permuted_negative		CTATTCCCCTCTTTCGTGATACCCCCCTATGGCTTCCTAGATACCAGTCA
ILMN_1379440	0007040601	negative	permuted_negative		GAGCGTCTTCGGATGGGTACCAGAGAACTCAGGGATGTATGATGCCTACA
ILMN_1380109	0002450025	negative	permuted_negative		GCCGACGAGACGCCTTTAGCTTCCTACTGAACGAATTTTCCAGGTCCAGC
ILMN_1379599	0004230110	negative	permuted_negative		AACCTATCCGAGGCCTTCGGCAGAGGAACAACCACCAGCCCAAGATCATC
ILMN_1379614	0000610408	negative	permuted_negative		CTCCTCAGCTGCCCCTACATTAGGTATCTACGGGGAAGATTTGCTCCACT
ILMN_1379734	0003610112	negative	permuted_negative		ATGCTTCAGCTCCCCAGAACCCCGAACCCGGCATTTGACAAGAGGCTTCT
ILMN_1379453	0003130286	negative	permuted_negative		TGCCAATGGGGTGATGGTGCCACCCTTATGATCCCAACTCTAACCTTCGC
ILMN_1379537	0005080008	negative	permuted_negative		GTGTTGTGCCAGCCGTTTGGTCTCATTCTTGGCACGTACATAGGCTCTTT
ILMN_1380359	0002190605	negative	permuted_negative		AACTTGGCGGGTAGTTACCCAGCGGCCCAGGCTCAGGTGTTACTTAGAAA
ILMN_1379646	0001050091	negative	permuted_negative		AACCACACCATTGACTACGAGCGGACACAGTCGAGCTCAAGCAGCCATGC
ILMN_1379973	0004200341	negative	permuted_negative		GCCTTTCCGTGCGATTGCCCCGTGCATTTTCCTTAACTCTTGCTGGGAGA
ILMN_1379490	0004480592	negative	permuted_negative		CAACAGAGTCTCGGGCAACACCATGGGATCATAGTCCAAGTCTCGCCTGA
ILMN_1380005	0006980369	negative	permuted_negative		CGTTCGATTACACCCTGAAGCACTAGGCAATGAACTGCCTGAAAGAGTGC
ILMN_1379919	0004280397	negative	permuted_negative		GGCCATAGGGAATGACTGGCAATCATCAGCCACCCCCCACGCCCATTGCG
ILMN_1379947	0000840044	negative	permuted_negative		GTCGCCTGGGAAGACTGTTCTGCCTGTTATGCGAAGCATGCTTGAGTCGC
ILMN_2038789	0002370093	cy3_hyb	phage_lambda_genome:med		GCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACGT
ILMN_2038789	0002370093	low_stringency_hyb	phage_lambda_genome:pm		GCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACGT
ILMN_1379632	0004850672	negative	permuted_negative		TGGGTGCTTGCCTCCGGGGCTGCGATTCTAATTTTGCTAGTGGCAGGCTG
ILMN_1379788	0003520035	negative	permuted_negative		GCATGCCTTACTGGAATGTTCCCCCAGACCTCATTATTTGTCACGCCTAC
ILMN_1380064	0006980035	negative	permuted_negative		ACCTATTGCCCAATGCCTCGGGCCTATGTATGGTCGGCTTGCCTATGGGG
ILMN_1379687	0005690368	negative	permuted_negative		AGGGCTAAGACAGGGTGGTACGTGTGCCATCGTATATGTGGCTGGAACGC
ILMN_1379421	0003120039	negative	permuted_negative		AATCTTCAGCACCCTGCCCACTCAGACCCTTAAGAGCCGGAATGTCTTGA
ILMN_1380179	0006840441	negative	permuted_negative		TCAGAACACGTCGGGATGGAGTCCAAGCCGTGCCAGGAATCGTTACTACA
ILMN_1379548	0006650725	negative	permuted_negative		TGTAGCGTTAGTCCCTGATAGACGCCACCTCATCGACCACTGTGATCATG
ILMN_1380165	0002900600	negative	permuted_negative		GCATGGCACTGTCCCAGAAGTAAAAAGGCGGTCAACGGCTATGAGGTCTC
ILMN_1379473	0005080022	negative	permuted_negative		AGAGAGAGAGGGCCTCGGGCCCCGAGAAACATCAACAAAGCGCAATCCAG
ILMN_1380245	0006760128	negative	permuted_negative		CTGGGCCATAGTAACCAGAACGAACCGCCCGAAACACATGCCGCTGGGCA
ILMN_1379620	0003360156	negative	permuted_negative		TTGGTGAGGGGGTCTCCATCAGCGATAAGGACGAGAGGACATGCAGATGG
ILMN_1379688	0004540270	negative	permuted_negative		AGTGGCCCATTTCAGTATACATGTAGCGTCCGCTGCATTCCCACGGCGAA
ILMN_1380055	0006450014	negative	permuted_negative		CCATCTGCCTCCACGGGTCGGACACCCAGGTATGACTGCCAACATGACTC
ILMN_1379486	0000450452	negative	permuted_negative		AAAGACCACCTACCAGTTCTGGGGTCAACGTTCCTGCGATTTGTAAGGGA
ILMN_1379690	0001940504	negative	permuted_negative		CACATTAACCCACCTAGCCAACCAGCGTGGCATTCAAACAGCTACAAGCT
ILMN_1379683	0004070369	negative	permuted_negative		GTCGCTCAGGGACAGTCTCTTGACTGTAGATCGTGTGGACAGTCTGCGGA
ILMN_1379561	0001570736	negative	permuted_negative		GCTGAAGCTGACGAAAGGCAATCGAGTGCGCCCCTGATGTGTAAGATTCC
ILMN_1380197	0004540551	negative	permuted_negative		TGGTACTCGTGGGCTACAGTGGGTGTCCAAAAGCCACCTGACCTAAGAGA
ILMN_1380339	0000670484	negative	permuted_negative		CATCAGTTGCCGTGCCCCAGACCCAGGGACTGGAATGTGCATAAAGAGGA
ILMN_1379468	0000110180	negative	permuted_negative		GGCTACATGTGTGAGCCCTCAGTACTGGATGCACCTTCTTTTTAGCATGG
ILMN_1379922	0000840064	negative	permuted_negative		CTCCTCGGCATTCCCCCAAGGGTTCACTCGTGGATTTGGCTAGATGTACA
ILMN_1380150	0004570333	negative	permuted_negative		CCCGTGGCACAGCAGACTGCTGCTGACATAGAGGCTGCAGGGGATAGTAT
ILMN_1379905	0006550397	negative	permuted_negative		CGTGATACGGCATGCTTTCGGCCCTACTATCCACCGAGCACCAGGTGATA
ILMN_1379940	0003710440	negative	permuted_negative		CTGTGCACCTTGGTATGTAATGCGGTACAGGACATCTCGGATCTTACCCT
ILMN_1380053	0002480722	negative	permuted_negative		AGCCAATCTAGTGCCAATGAGCGATAGGGGTCTATTCCCCCCATCAATAG
ILMN_1379849	0004760458	negative	permuted_negative		TAGAAGAATGGGGCATGACTCTCGGGAAAGAAGATTGACTGGGCGCAACT
ILMN_1379797	0005340315	negative	permuted_negative		CATAGCGCCGGCGGAACCATCGTCCTGATAGGTGTTCCTGACTGGAACCT
ILMN_1378238	0000110215	cy3_hyb	phage_lambda_genome:low		CCGACAGATGTATGTAAGGCCAACGTGCTCAAATCTTCATACAGAAAGAT
ILMN_1380119	0001230746	negative	permuted_negative		TTCAGAGAGAACCATCCTCTATGGGGCTTCAGCAACGAGGACCACCACCC
ILMN_1380013	0001450041	negative	permuted_negative		CCTAGCTCAATTAGGTCGCTGGTCCTCTTATGCAGCTGTCGGAAGCTTGG
ILMN_1379977	0002470465	negative	permuted_negative		CAACCCTTGTATGAGGTTGGGTCGGTGACTGGATGTGGATTAAATTCCCC
ILMN_1379726	0002360064	negative	permuted_negative		GCCGTTATAGGGCTGGTTGAGGTGGAACTTCTATCGTGATGGCCCAATTT
ILMN_1380251	0003780129	negative	permuted_negative		GCGAATGAGTAGGGCTTGAACAAACGAACCAGCACTCTTGGTGTTGTGGT
ILMN_1379962	0005220112	negative	permuted_negative		AGGTTAAAACACACCCTCCCCCTTGCGGCATGCACAGGGAGAGATGGAGC
ILMN_1379843	0004920100	negative	permuted_negative		GGCATGTGGACCGCCCTGAGAGGTTCAATGGAACCAGCCCAGGAAAATCA
ILMN_1380102	0001400088	negative	permuted_negative		ACCCCAGGAAGTGCTCCGTCTCTCTGAAGCTCAGATCATCTACCTGACTC
ILMN_1379439	0001400400	negative	permuted_negative		CTGTGACAGTGGCTCAGGTTTGGTGAGGGTTATCCTAAGAAGGAGGGCTA
ILMN_1379411	0002450204	negative	permuted_negative		CATTGGGGATCTCGAATATGCGCACAGGCGTTGGTCTCTCTATGGGTTTG
ILMN_1379558	0002260168	negative	permuted_negative		CCTAATGGGCCTATTGAAGGCCCCAAAACTGGCTTCAGATGGCGTCCGTG
ILMN_1379527	0005270088	negative	permuted_negative		GCTCCGCAACCTTCAGACCCCCATTCTGTTGTTCCTACTGAAGAGCGGCC
ILMN_1379538	0000770600	negative	permuted_negative		TAGATAAAACAGTGGAAGGCTGCATGATAGGGCACGGCTCCGAAGGTGAT
ILMN_1379419	0005720364	negative	permuted_negative		CAAGGTTTACTCCGGGCGGAAACTCTCATTCGCATCACGCAGCTACCATC
ILMN_1379769	0000050035	negative	permuted_negative		TGTAGGAATCCAGGGACCCAGTCACTCTCCAGAGAAGGTGTCTTGTTTGG
ILMN_1380369	0002970452	negative	permuted_negative		TTAACCGCCAGGATCTGGCCTGGGCTGCAACGGAGGTTTTGCTTTCCAGG
ILMN_1380348	0006940504	negative	permuted_negative		CACACATGACCTGGATTGGAGGGTGAGGCTGCTATAGGTACTGCTGCCCT
ILMN_1379708	0006380446	negative	permuted_negative		GGGGGAACCGGTGCTCCTGCTGGATGTTGTTTCGAACAAAGTTGAATGAT
ILMN_1379898	0004730528	negative	permuted_negative		GATACAACAAAAGGGTGTAAGTGGTCGAGTTCGGGCTAGAGTAGACCGCT
ILMN_1379742	0003990110	negative	permuted_negative		CATACAGAATCTGGGGAAAGACTGCAGTGGCCCGCCCCGTGGTGTTGAGA
ILMN_1379952	0003870253	negative	permuted_negative		GAATCGGGCCCTCCAGGCCACAGTATACTATGGAATTCAGGTCGAACACC
ILMN_1379959	0000540300	negative	permuted_negative		TTGGGACTACTGAGGTCATTCTGGCAGGGCTGCCATGGCCAAAGCTTCTC
ILMN_1379648	0004610075	negative	permuted_negative		GGCTAAGAGCACTAGTGTTGCAGCTGATGACCTATTGAAGCTGGTTTCGG
ILMN_1379812	0001770717	negative	permuted_negative		GAGCTGCCGTAGCGACAACCCAAATGGGAGCAAGCGGGCTGAGGGAAGCC
ILMN_1379568	0000510736	negative	permuted_negative		CGGCCCAAACGAAACCACGGGGAACCAAGAAGAGCACCGGGCGCAAGCCA
ILMN_1379827	0005340097	negative	permuted_negative		TTATCATACGTCGCCGGCGTTAGTCCAATGCCATCTTCGCCCGCGCAAAG
ILMN_1379782	0001170066	negative	permuted_negative		CTCTCGGGTGGACCTTAGACAGGCCACCGACAGTAGACTGCCCATGATCA
ILMN_1379555	0002120019	negative	permuted_negative		TAAATCGGTGGAGCTCACACTGCAAACAGCCGTCGATCGATTTTTTGGGG
ILMN_1379758	0006550253	negative	permuted_negative		TACAGGATCTCAGGGAAGGTTGGTGCTGATGAATGGACGAAGAGCACGGA
ILMN_1380254	0004060746	negative	permuted_negative		GTGTCACCTCGACCACCGATGGCAGACAATCCTTACCACTAAGTCCTTCT
ILMN_1380161	0007100717	negative	permuted_negative		CACCTGCCAACAAACCTTCGCCCCACTGACCTGGCAGCGTGTCTTAGCCG
ILMN_1379674	0000460450	negative	permuted_negative		GAAGACCTGTGGAGGTTACGCGATCCGCTTGTCCGTATGTTGTGGCGGTG
ILMN_1379402	0002480711	negative	permuted_negative		CACGGCTCGTAACCCTGAGTAAGGGGAAGGCCACTCAAAGCTAACCGGCA
ILMN_1379655	0000360129	negative	permuted_negative		TGGTCCGGTAAGCTGTAAAAAAGACATCCTGGTGCTTCTGAGCCATGCGG
ILMN_1379693	0006650541	negative	permuted_negative		ACCTTCCCCGAGATCAACGCGTAGAGACCTCCCACGCCATCAGCCGACTG
ILMN_1379715	0006200068	negative	permuted_negative		GTCGACGAATCTGGTGGCGTGACCCTGGTAGAATCGAGGTGTGGACTGAT
ILMN_1380138	0004120280	negative	permuted_negative		GCATGGCTAAGGCGAGAGTTGAGGGATAGGGGACAGTTGCCGAGACTATG
ILMN_1379438	0005700040	negative	permuted_negative		CTGCAGATCTTCGAGGGGAATTGGGCACCGATAGGGAGATGCAGTCAAAG
ILMN_1379792	0001940148	negative	permuted_negative		GAACAAACTGCTGAGCATCCGACAGAGCCTTGTGCTAGCAACCCATACTT
ILMN_1380362	0000770095	negative	permuted_negative		TTCCGTCGGTTCCCGGTTGTTGTCAATGGGGTCGGAGTTCTTGAGCTGGT
ILMN_1380223	0006380577	negative	permuted_negative		AAGGTGACCGGAAGGAGACCCGAAACGTCACGCGCCGAATTAAAAGGGCG
ILMN_1380001	0000870088	negative	permuted_negative		TCTACCCTGATCTGCGGCCCAAGAGAGAATCTCCACTCAAATCCGTTATC
ILMN_1380033	0005050315	negative	permuted_negative		AAGCTCGAGGGCCTGACAAGGCACAAGGGAGGAAACTTAGGGAGCGCACA
ILMN_1380240	0003940438	negative	permuted_negative		GCATATGGTCTCGAGTGATCCCTCTTCACGAGAGGCACTTTAGCTTGTCC
ILMN_1380097	0003060692	negative	permuted_negative		CTTGGGAAGGTAGCCCAAGAAAGGGAGTGATAATCAGTGGCGGAGTGCCG
ILMN_1380168	0003780707	negative	permuted_negative		GGCGTGCTGTATCTCTCCGCCAGGCTCTCTGGATGATTTTGCAGCTCTGG
ILMN_1379890	0005900113	negative	permuted_negative		CAGCGTTCTTGGAGGTCTCCCGCTGCGTCTGGACGGGAGTCTTTAATTGA
ILMN_1379809	0000110739	negative	permuted_negative		TTTCCTGTGTTGCTAGGGGCGAGCCTCCTGCTTGACGTTGTCCGAAGGAC
ILMN_1380181	0006940576	negative	permuted_negative		GGTTAGACACATGGAACGTACGAGTGGGCGAGTCAGCAGAGTGCGGTAGA
ILMN_1380231	0000870156	negative	permuted_negative		AGTGTACACAAGCCCCAGTTCTACCTCAGCCCCCCAGGCAGGAAGTCTTC
ILMN_1379594	0006180020	negative	permuted_negative		ATGGTTTGACCAGAGGGCGCGTCTCAATCGAGAAGAAAAGACGACTGCGG
ILMN_1380157	0004730041	negative	permuted_negative		GCAGTGTACGAAGATTGGGTGCTGGACTGAGGCAATGCACTAAGGAAAGG
ILMN_1379617	0006900056	negative	permuted_negative		TTCTCACCTGCAGGCGCTCAGAGAGATAAAAGTGGGTCCGCATGGCAGCA
ILMN_1380176	0006290131	negative	permuted_negative		TCTATATACGGCCAGTACGTAGCGTACCACACCAGGCCAAATCAGGAAGG
ILMN_1379744	0004150348	negative	permuted_negative		AGACTTGGTACTAGGTAGTCGGGATGGTTTCGGGGGGCGGAGGAGCAACT
ILMN_1379950	0005720092	negative	permuted_negative		CCTCACTCTACTAAGGCACAGATGCCATCAAACGTCGCCGCGCCACAGAC
ILMN_1379611	0004280035	negative	permuted_negative		GTCAGTGCAGCTCCTATTGACCCAACGTCCCAAAGTACACACTAACCTCC
ILMN_1380144	0000070280	negative	permuted_negative		TTTTGGGAGGGAAGATTTCCCCAGACCACGTCGGAGAGTGTGCTCCTGGC
ILMN_1379659	0000430487	negative	permuted_negative		CTCGGTTCAGACGTGAGGAGAGTCAGTATACAGTTCGTACCCACAGTAGA
ILMN_1379738	0005670451	negative	permuted_negative		ACACTTGAGCTTTGCGGTCTGCACTGACACTTGGATTGCCTAGGGGGCCC
ILMN_1380187	0006940348	negative	permuted_negative		CGGTGGCCATCACGCCGTAGCTGAAATTGTGGTGAAGGAGGTCGATTAGC
ILMN_1380355	0004280519	negative	permuted_negative		ATGTTACCACTGCTGGCCATGGCCTGCTCGGACTATCTGTTTCAGGAGCT
ILMN_1380063	0006900014	negative	permuted_negative		AGCAGCTGTACAGGATCTAACCAGTCGGAACTTCTCCCAGATTGCCCGGA
ILMN_1379669	0003170358	negative	permuted_negative		GCTGTCCGGGTTGGCTCTACTAAAGATTAGGAGCAGTAGTACCTATTGGC
ILMN_1379684	0005570292	negative	permuted_negative		GGCGAAAACGAGGAGGGCGGCTCAGACATGGCTCCAGAGTTTTTAGTCCC
ILMN_1380136	0004210487	negative	permuted_negative		GGTGACAGATTATCCCCATCCGTAGCTGTAGGTGATGAGGAGGGGGCCCA
ILMN_1379517	0006110685	negative	permuted_negative		GGGTGAAAGGACCTGGAACTATAGAGGCTTCTGGCCCTATGAGTATCCTG
ILMN_1379873	0004780717	negative	permuted_negative		CCAAGAAAGTCCGGTAGGACAGAAGCAGCGGTCAGGTCCTGTGACATCCT
ILMN_1379403	0004920170	negative	permuted_negative		TCAGAACCGGGAGGGATGTGCAGACCGGACATGACTTGCCTTGGAGGGGC
ILMN_1379636	0000070286	negative	permuted_negative		TTAGCAGTGCTTGCCAAGGGTTCAGTGGGGTGCTCGGGGAGCTGAATGTC
ILMN_1379786	0006130332	negative	permuted_negative		CGGATGGGGTGTGCAAAGAATCCTACTTCTACTGTTCCGGATTCTGCCCT
ILMN_1379458	0006400079	negative	permuted_negative		CAACTCGAGACGACCGCACGCGGACAATTGAGCTTGTTCTGACAAGTACC
ILMN_1379634	0006220397	negative	permuted_negative		GGGTCAGGTATCAGAGGAACTGGGCGACCATTCGGCAGACGTACTTTGGA
ILMN_1379817	0004570017	negative	permuted_negative		TATGGATGTGGATTTACTACCCCACAGGGCCCGTCCTGGACCTGCATGGG
ILMN_1379627	0002650398	negative	permuted_negative		TAAGGTCTCCCACGCTCCGCTAGGAGTCCGTGCTTTGCGCAAGATGAAGG
ILMN_1379770	0002120129	negative	permuted_negative		GTCCAGTAATAGGCTGTGGGACCCTAAATATGGGGGTAACGGTGCTTAGG
ILMN_1379976	0004590735	negative	permuted_negative		AGGAGCGGCTTTTCCGGACAATCGAACCACCACATCTACATGAAGTAGGC
ILMN_1379601	0002680500	negative	permuted_negative		AAACGGCCTCATCCCTGGACTCGGGCCCTGACGATGAAAGCGTGTTCTTC
ILMN_1379445	0005080433	negative	permuted_negative		GAGAGAGCAGAGGAACACAGACTCCAGAGGGATGAGCCATGCTTGGGCAG
ILMN_1379526	0006520605	negative	permuted_negative		GCAAGACAGGGGGATGTAACCGGTGGGCGACACTTGTGAACAAGAGCATA
ILMN_1379780	0002230451	negative	permuted_negative		CTGTGCGCACTGGCTTTAAAGTCACCTGCGCTTGGACCTTACGCTGGTCC
ILMN_1379425	0002690458	negative	permuted_negative		CTACTTAGACCTCCCATACCTCTAAGTGAACCACCGGATAGCGGGGGCTG
ILMN_1379802	0001190504	negative	permuted_negative		GCGAGTCCGTTCGCTAGCGATTGTGATTTAACGAGGCCGGCGTAAGGCTA
ILMN_1380142	0006510519	negative	permuted_negative		TACCCGGGATGTATACTAGCCCCAGAGGCTAATGGCCAGAGCTGACTCTA
ILMN_1380154	0005340670	negative	permuted_negative		GGGCCCGTGCCTGCATTTGTTGAGAGGCAAATCCAGCTCACCACTTTCAG
ILMN_1380124	0004920463	negative	permuted_negative		GAGAACCCCGACGGAAATGGCGACCGCTGTTGTTCGAATCCGGGCTGATT
ILMN_1379899	0006200079	negative	permuted_negative		TCCTGCGGACCCTGATACCAGCTCACCTTGCATAGCTCTAGTGACAGAGG
ILMN_1380221	0002650280	negative	permuted_negative		GTGACGATGGCTGCTAATCATGCTGTTCAGTAGGGTCCCGGACAGGAGTT
ILMN_1379981	0004010441	negative	permuted_negative		CGGTCCCTCTCATAAGCGTCACCGGGACTAAGCCTGAACTCGGTCAAGTT
ILMN_1379418	0006220193	negative	permuted_negative		TAGGCCGGAACGACGCGGCATAGTGCTGCATAAGAAGAGGATGTAGGGCC
ILMN_1379472	0000730670	negative	permuted_negative		AGGAAGTGGGAGGGGTTGAAGGCGAAGGCGATTGGAGGGGTTAAAAGGGG
ILMN_1379883	0006660167	negative	permuted_negative		AGCCACGATAGGTGCCTGCCACCCTCCAGCTACAGTGGATTAGGTAGCCA
ILMN_1379815	0001990093	negative	permuted_negative		AGGCCCAGTTAGGCCGTCGTCTGGCTATGTTTGGTCTGTAGAACGATCAG
ILMN_1380019	0004230358	negative	permuted_negative		CCTAGGCAGACCGTCAAGCTATCTGGGGACAAACTCTGCATGGGATGTGG
ILMN_1379535	0002190131	negative	permuted_negative		GATGGAGAAAGGGATAGAGCCGCACAGCTAAAGCCACCCATGAAGCCACA
ILMN_1379877	0003390403	negative	permuted_negative		AGACTGTCTATCCCAAGACCCCTCGCATGTGCCAGGGACACCAGAAAATC
ILMN_1379643	0006660494	negative	permuted_negative		CCAGTATACTCATGGGGGCAGACGTGAGCTCGCAGTTTTCCAAACCACAG
ILMN_1379932	0002320050	negative	permuted_negative		GGATCTGGCTGAGGAAGGTCTCCGCTTTTACCCCTATGCAGACCGATTCG
ILMN_1379795	0002030315	negative	permuted_negative		GATCCTCGTGTGGTTGAGAGAGCGCCGTGTGTCCTCAGAGCTGTGCAAAA
ILMN_1379765	0004480341	negative	permuted_negative		CAACGAGCATAGGTGAGAGGCCCGAATGGGGACAAAGCGGGGATGAAACA
ILMN_1380027	0002900315	negative	permuted_negative		TCCGACGACCTGAGCTCCACCCCTTCTCGTCGGTGCATGATGGAAGCCTA
ILMN_1380043	0000460487	negative	permuted_negative		GGAGGCATGCCACCTCTTCCTACGAACAAGTCAGGAAACGGTTCGAAGCC
ILMN_1379480	0003440377	negative	permuted_negative		CCTGGAACTGGCCTTTCCTCCTCAACTTCAGTATCTGGCCGAAGCCATGC
ILMN_1379386	0002360446	negative	permuted_negative		AGATGCGTTTGGAAAAAGCAGCACCTGCTGTCCCTAGCTGGAGATGGGTG
ILMN_1379521	0002100739	negative	permuted_negative		TGTGAGCATCAGTGCTGCCCCCCAAGAGGAGGTGTAGCAGGTGACTTAGG
ILMN_1379704	0000130092	negative	permuted_negative		TGCTTCGGGTTGGTGGGATTCCCGATACCACTCCAAAGACTGATCTGAAA
ILMN_1379467	0002100332	negative	permuted_negative		CAAGAAGCAGTGCTTGCAGAGGCGGACATGGTTCTCGAGCGGCAGCGCCA
ILMN_1379428	0004730632	negative	permuted_negative		GTGCACCTAACACTGTTTAACAGAGCGCTCACTATGGCTGCACCGAGCAG
ILMN_1380022	0003360184	negative	permuted_negative		TGTCGGCACAGGCTTGCGACGTTCTGTCCAGTCTCGCTAGCCACAAAGTC
ILMN_1380373	0004670619	negative	permuted_negative		GGACAGGCGTGACCAACTCAGCCCCCAAGGACAAATTGAAAGGTGAGTGG
ILMN_1380216	0003830037	negative	permuted_negative		GTGACCAACTGCCGCACCGCTTCGATACAGGCGCATAGAAAAATTCACTA
ILMN_1380329	0004760368	negative	permuted_negative		CGAAGCGGTTGTGGCGGATGGTGTTTGACCTTTGCAGGGGTCGTGCAGTT
ILMN_1379382	0002630064	negative	permuted_negative		CCGACTGCATGACTGCAAATGGCAGAACAGGGGCCTAGGTATATAAAGCT
ILMN_1379984	0002340750	negative	permuted_negative		CACAAGCTTAACGGCGGAGCCATCAGGAGAAAAGCACCCACTGGCCATTT
ILMN_1379652	0006650138	negative	permuted_negative		ATAGTGAACGGGGCCGCAAAGCCCATAGGATGGAAGACAGATTCTGCTTC
ILMN_1380093	0003290687	negative	permuted_negative		CAGTTTGAAGCAGATCTGGAGGTCTTGTGGCCGTGAACGAGCACAAGCAT
ILMN_1379602	0004070082	negative	permuted_negative		CTACTTCCGGTGGGTTGTAGCACTCAAAGTCGAGTTGCGGTCCAAATCCA
ILMN_1379415	0005220156	negative	permuted_negative		CTGGCTCTCGACGCCGATGTCAGGGTCTTGTGGTATTGGACGCTGATCTC
ILMN_1379552	0000670332	negative	permuted_negative		GCTCCTCTTGCAAGGACACCCCCTATTGCGGACAATGATGAGGATTCAAA
ILMN_1379542	0000450537	negative	permuted_negative		TAACAGCATCTGCACGTGGCCGCGAAGGGCACGAATGCGTTTGAAGGAGA
ILMN_1379534	0004610433	negative	permuted_negative		GCTCGCGAGTCTAGGTTTCCATGAGGACAAGCGGGAGGTAGGGCGACGTT
ILMN_1379398	0003840373	negative	permuted_negative		TTAGACCAGCACCCCGTTTTGTTTAGCCTAGATGTCAGTGGGGGCGGACT
ILMN_1379831	0002470309	negative	permuted_negative		GAAGAACCTCTGCTTGAGGCCGGGACGTGTGCACATGAACGGTGGACTGT
ILMN_1380071	0002360136	negative	permuted_negative		TGCGGGTAGGAGGCCCCTGTTCTGAAAACCTGCAAGCAGAGCTTAGCTGA
ILMN_1379895	0001240037	negative	permuted_negative		TCTCCCGAGCACCAGAATAAGAACGGATGAAGGAGACGGTGGTCCGGCGA
ILMN_1380207	0001050672	negative	permuted_negative		TATTCCCATAAGGGGGTATGTTGACCGTCGCAAGAGTCGTGGCGGTGTGT
ILMN_1379572	0003290292	negative	permuted_negative		AACCTTGGGCTCGCGTTTTCGTTTGCGGCGACCCGGCCTTTGTCTCGGGT
ILMN_1379451	0003990121	negative	permuted_negative		AAATAGAGGCAGTGACGGAACGGCAGTGGACCCGACTAGGCAGTCTCAGT
ILMN_1379996	0002900500	negative	permuted_negative		AATGCTCTGGTGTTAGCCCACGGTTGCGTTTGGTGCCACGCTGGGAGCTT
ILMN_1379541	0004670156	negative	permuted_negative		CAGGCTCATGGGTTGGTGGCTGCGCACAAACACCTACGCCGCTACCTAGG
ILMN_1380081	0003450484	negative	permuted_negative		AAAGAGGCCCCAGCCCGGAGGCAGCATGAGAGGGTACTCCTACAGAGCTT
ILMN_1379823	0006180377	negative	permuted_negative		CTGCAATGAGGCGCTCCGTTGTGAATATGAGACCCTCGGAGGATTGGAAT
ILMN_1379869	0000430372	negative	permuted_negative		CCGATGGTCGGTGTTCGGAACAAGATTGGAAAAAGGAGGCTCAAAAGGGG
ILMN_1380238	0001780369	negative	permuted_negative		TTTGGGGAAGGAGACAAGCTATGGGCCCTGGATTTCATTCGAACCAAGCG
ILMN_1379553	0005690671	negative	permuted_negative		ACTAAATTGAACGACTGTCTCGGAGGGACCTCTAACAGAGATTGGCTCCG
ILMN_2038791	0006130278	cy3_hyb	phage_lambda_genome:med		CGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTC
ILMN_2038791	0006130278	low_stringency_hyb	phage_lambda_genome:pm		CGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTC
ILMN_1380203	0001340022	negative	permuted_negative		ATGAGGGAGGATGGTGTTGAGAGGAGGGTTCTGAGGACGCTGAAGGTACT
ILMN_1379864	0003190017	negative	permuted_negative		CTAGCTCCATGGTGGACGTTACCGAGGTGAACGAGTCCGCTAAGGAACAA
ILMN_1379412	0002470068	negative	permuted_negative		ACACGCCCATCTTACACCCAGTCAGTCGGTGCCTGGGTGTACCAAACCAG
ILMN_1379970	0006590452	negative	permuted_negative		ATCAGCTGGACCGTGCCCGGGAAGAGCTTGCTCAATGCGAAACTGTATGT
ILMN_1379657	0000770500	negative	permuted_negative		TCCCCCAAAAGGGCCTTGCCATCCCATATGTGGTGCTGTTAGAACGATTG
ILMN_1379918	0005220341	negative	permuted_negative		ACACTGCCTAGTACCGGACAATGGCCGGCCCCAGCCTGCCACAAACAACG
ILMN_1379783	0000730315	negative	permuted_negative		CCAAGGTGCGTTGGTACGTGGCAAAGTGAATCGGACATCAGGTTAGGCCA
ILMN_1379474	0005550112	negative	permuted_negative		AGTAACCCACTTCAGCCGAACGCAACCACCCACAATCCGCATGACTTGTT
ILMN_1380116	0006370341	negative	permuted_negative		ACTCTGTGCTGCGGACAGTGGGAAAGTGTAATCAGGTGAGGGGAGGTAAG
ILMN_1379514	0005890072	negative	permuted_negative		AGTCCTAGGGCACCTCCCTTCGGTGACCACACGAGAAATAATGGGACACT
ILMN_1379523	0001990270	negative	permuted_negative		AAGCAAGGACGGAGGAGAAGGAGTGATGACTGCATAGACAATCAGAGGGC
ILMN_1379789	0001340433	negative	permuted_negative		AAGCCAAACGGCCCCGATTCAGACCAAAGGAGCTGCCAAGGTAATGGAAA
ILMN_1380040	0003850044	negative	permuted_negative		GTCGAACTAAGAATCGACATGTCAACAGAACTGGGGAGAGAAGCGGAACG
ILMN_1380173	0004730164	negative	permuted_negative		CCGAGCAAGACTCTGGACCTGGCTACCCTGTGTTGCTGCTGTTGAGTACT
ILMN_1380366	0001850707	negative	permuted_negative		CTATCTTCTATTTCACTGCCTAGTGAGTGGCCAATCGCCGAGAGAAGTCC
ILMN_1380220	0007040452	negative	permuted_negative		AGCCCCGGGTCCCTTGACTGGCCCAGCAAAAAACCCTATAGAAGAGGCAC
ILMN_1380084	0001450037	negative	permuted_negative		CTAATGACCGCCAGCAAACACGCAGTACCCCCTATCAAGGCGTGAGTCAT
ILMN_1379680	0003990017	negative	permuted_negative		CTGCCTAGGGGCAAGTTGCTGGAAGAAGAGCCCACGACTTGGCTTAGCCT
ILMN_1379598	0000540162	negative	permuted_negative		GCTCCTCTGGTGAGGAGCGGATGAGTCTATAATGCTGCGCCTAAGTGCCC
ILMN_1379586	0006620114	negative	permuted_negative		AATCCTCAACGTGTGGAGATCTTACAAAGGGTCCCTGCTGCCCAATGTGG
ILMN_1379714	0000510750	negative	permuted_negative		TCTCGTGCCCCAACTGGACCGCCAACAGGCGGAATGTGGCTGGCGTTCAG
ILMN_1380244	0006760142	negative	permuted_negative		TAATGCCCTCCCTTAGGACAGAGAGCCTTGAGGGCCATTTTGGTCCATGC
ILMN_1379619	0006400170	negative	permuted_negative		CCTCACCAAGCCGAATCAGTGTTCCAGACGCTAAGAGAATGGGCAGGAGC
ILMN_1380035	0004280270	negative	permuted_negative		AAGCTTCACTCACCTAATTCCCAGAGCGCAGGACTTCGAACTGTAGACGC
ILMN_1379946	0006980037	negative	permuted_negative		TCTCTTCAATGGGATGACACCCCGTCGCCACTTACATCACTTGGTGAGAT
ILMN_1380180	0002030576	negative	permuted_negative		CAGCTGAGAACCGGTTAGTCGAGAGTGTTTAGTAGGGTATTCACGCTTCG
ILMN_1379513	0003140025	negative	permuted_negative		AGAGTGCTGGTTGAGGCCTGCTGATGGCTTCAGTTGATACCTTCTTCCTC
ILMN_1379914	0006040161	negative	permuted_negative		CTGCAACAAAATGTCGTGATGCCTGCTACTGGCTGTAGCCCGTCTGCGAT
ILMN_1379575	0005390072	negative	permuted_negative		CTGAATATCCGCGTGTCGCAGTCCTGATGTCCCTCCTGAAGCAGACTTTT
ILMN_1380115	0000840524	negative	permuted_negative		GATTCAGAGGACCAGGCTTACGCCACAAATGTAGCGGAGCCGGAAGAAGA
ILMN_1380110	0000580497	negative	permuted_negative		CAGGGGACTTACGCCCAAGTAAGGGTTCAGAATCGAAATCTCCTACTCTC
ILMN_1379697	0003850524	negative	permuted_negative		ATCCTGCACAAAGCTTGAGAGGCAGCCTGAAGGTGTGATATGTGACGCCT
ILMN_1379650	0003140204	negative	permuted_negative		CAGTTGCTCTATCACCCTAGCTCGGAACGCTTAGAATGACAGCTCCCGTC
ILMN_1380094	0005550373	negative	permuted_negative		CCGGGGCTTACTCGGTGTGAACTACTCAGGTCCAAAGCGGAAAGTTACAG
ILMN_1379498	0000730504	negative	permuted_negative		CAAACCGTACTCGAACAAAAAGGGGGCTAGGTAGTGGTCCTAGGAGATCA
ILMN_1380252	0006350746	negative	permuted_negative		GGCTGCATCTCAGATAGCATACTGTACCCGACACCGTTCATGTGAGGGTT
ILMN_1379658	0006510300	negative	permuted_negative		TGCCACCAAAAGGTCCTAGCTGCCTAGAAAGTGTTGTGTACGGACGGAGA
ILMN_1380052	0004570706	negative	permuted_negative		GTCGCCCCATGTCGGGGGTAACCCATTCAGAACACAAATAGAAGTCAGGA
ILMN_1380185	0004670020	negative	permuted_negative		TTGGTCAATACATTTGGGTATAGCTAGGGGGTTGTGGTAAGGGCGGGTGG
ILMN_1379493	0000430138	negative	permuted_negative		AGGGGCTAGATCGTGTAATGGCACACGTCCTCTGGTGTCCTCTTTCCCAG
ILMN_1379430	0003710541	negative	permuted_negative		TACTTAAGCCCTCTCGCCGTTGCATTCACTGAAGCTAGCCTACCCTCGTT
ILMN_1379938	0003990706	negative	permuted_negative		TTGTGGAAAGCGCCTATAAGCCGGGGACGCAAAGTCGTATAGCATACGTG
ILMN_1379880	0004200181	negative	permuted_negative		GCTTTGACAAGTCCACCCGGCGCCTTGGTTGTTTAAAGAAGGTGGTTGGT
ILMN_1379836	0002690026	negative	permuted_negative		GTCCGAAGCATTCTGGGCGGGACACAATCGTGTCCATCATAAGCACCCTG
ILMN_1380103	0002320411	negative	permuted_negative		TCTAGGGGAGTATCCGCACTAGCTTGGCGCCATCCAAAGATGTGTGCCCT
ILMN_1379735	0002030025	negative	permuted_negative		TGTAGAAACAGCCTGGTGCGGCGCCTCCACCTAGCGGGGTAAATGACATG
ILMN_1380229	0004810458	negative	permuted_negative		TACGTGGGCAGCAACAACTCCGGGAGGACACCAGCAGCTTCTGCACCGAA
ILMN_1379441	0001190500	negative	permuted_negative		GAAAAGGCCGGGTGAAATAGCGTAGGCGTAGAGGGATCCCTAGAGGCCCT
ILMN_1379422	0001980270	negative	permuted_negative		CCAGACCTCAGGGCTTCCCTCAATACTACCATGTAACTCACTCAAGATGG
ILMN_1379776	0002190161	negative	permuted_negative		GGTGGAAGGCCACATGTTGTGCTCTTAGGAGTGATGCATACCACGGGAGG
ILMN_1380347	0005290450	negative	permuted_negative		GACTCCTGGGGGTGGGGCAACGCACATCCATCCTTTGATGCCTGTGAACA
ILMN_1379392	0002850128	negative	permuted_negative		TCACTTGGCCCCCACGACTAAAGTCATCTGAAGACGGCATGTCCTCGGCA
ILMN_1380336	0003520300	negative	permuted_negative		CAACATTTGGGACGCCTTAGAAGGGGGTAAGCCGTAGGGCATGTGCGGGA
ILMN_1379559	0005130133	negative	permuted_negative		AGTTTGGTGCATCAGGGCTTCGGGACGGTGATGTTGCTGGATGAGGACAG
ILMN_1379892	0000580066	negative	permuted_negative		GAGCAAGCCGCGCTAATCCAACTTGAAGGGGCGAAATTCCAGGCGAATCC
ILMN_1379437	0004060064	negative	permuted_negative		TTCGCTTGTTCCGCTAGGAAGGCCCCGTTGGTGGGTATTTGAAGTGGACC
ILMN_1379886	0006620048	negative	permuted_negative		TGGCTCTCCATTCCTAGCTAGTGTCCCTACACAAGCATCTGCGTTGTACT
ILMN_1380070	0002370204	negative	permuted_negative		AACCGGGCACAGAGAGGGAGGCACAGGAGTCAAACCAGGCATGATGCCGG
ILMN_1379662	0001780164	negative	permuted_negative		TGCCCACAGGGAACGCGCTGCCTCAGCAAATGCTATGCCACCCCAGCGAC
ILMN_1380370	0003520519	negative	permuted_negative		AGATCGTATCCACGGTGGCATGATCCTGGTTGAGGGAAGGATCAGTAGTG
ILMN_1379549	0003450047	negative	permuted_negative		GGGTAGTTGTTACCAGGAACACTTCTCAGGTGTATCTGTCAAGGCTGCAC
ILMN_1379999	0000610082	negative	permuted_negative		CCACTGATCACTGTGTCTAGTCATGCTTGACTGGCCCTCACGGCGGTTCT
ILMN_1379503	0001190315	negative	permuted_negative		CGTAAAACATCAGGCAGAGTTGCTACGGTATGGCCCTCCTTGTGGCTTTG
ILMN_1379604	0007050438	negative	permuted_negative		TGTCACGAAAGAGGAAGCCAGAGGGGGGTAGGGCTAGGGTGGCTGAACTC
ILMN_1380248	0001940025	negative	permuted_negative		AAGTTATAGCCCGCCCCAGACTGCAGAAGGGAGTCTAGCTGTTCGAGATG
ILMN_1379512	0006590152	negative	permuted_negative		CATGTGAAGGGCCAGCATTCCGAGCTAAGAAATATCGTGCCGAGAACCCT
ILMN_1380213	0001980093	negative	permuted_negative		GGGATTGACGACACCATGCTGCCGGCGTTTAACTGAATTATCAGCAGATC
ILMN_1379707	0002230167	negative	permuted_negative		GGGGTGTTAGGGCCATTCCAACCGTGCAAAGACGTGGACTCAGTTAGATG
ILMN_1379949	0000780097	negative	permuted_negative		CCAGGCGCTAGAAGCCAAGGCGTTCTGGAGATGCACAAGGGCGAGAAGAA
ILMN_1378234	0004810364	biotin	phage_lambda_genome		GAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAA
ILMN_1379416	0002850142	negative	permuted_negative		CGGCTTAATGTTCCCTTTCGGATCTGGCTCTGCTCCGGGGCGAACGTCGC
ILMN_1380198	0002470079	negative	permuted_negative		CTGCCTTATCTTGGGACCTGAGCGACGGACCATCTTACTTGCAGCTCCAG
ILMN_1379556	0006400463	negative	permuted_negative		TTGAACGTACCCGTGAGGACCCCCAAAAATAGACACACGGGATGTCTTCT
ILMN_1380067	0002030195	negative	permuted_negative		CACTCTTGACTGGGCCCACCAGCCAACAACAAATGAGGGAGAGGAGGCTG
ILMN_1380062	0004050047	negative	permuted_negative		GGAGGAGGAAGCGGAACTGATACACTAGCCACCACGGAGGAGATAGCCAC
ILMN_1380158	0003800520	negative	permuted_negative		CGGCCGTGTCAGGAGCGACACAACCCAAAATCTCTAGGCGGGTCCTGAGC
ILMN_1380098	0002480452	negative	permuted_negative		TATGGATTGCAGCCCCTTGCTGGCTCATTAGGTGTTGTCTGGGACTGTGG
ILMN_1379689	0004070037	negative	permuted_negative		CTCGGGCGCTGTCCTTTCTCCTTTACAGACAGCCCATGGAGTGGAGTCTT
ILMN_1380358	0004850195	negative	permuted_negative		TGGCACGAGGACCGCGAGAAGAATGGCGGCACCAAGGGGTAGATATTCTC
ILMN_1379956	0005130377	negative	permuted_negative		CCTTTGTCCACATGCACGCAGCCTCACTCGACCGTAAGATTGTTAAAGTC
ILMN_1379934	0001580735	negative	permuted_negative		GGAGGTTCTAGCCTATCTATCGGTATCTGTAGCTCCGTTGGCGCCGGTCT
ILMN_1380025	0003290671	negative	permuted_negative		TTACTTGGGTAGGAGCAGCTTAGAGCTTGCCTGGGTGTCTTGAGCCGCAT
ILMN_1380048	0002060286	negative	permuted_negative		CAGGGATTGTTTAGAAGGGTGGGTCTACCGGGCATAGATACGGCGCAGCT
ILMN_1379798	0002340114	negative	permuted_negative		TATGTCCCGAACATCGCCGCAATTTTGCACGCGCTGCGTTCGTCGCCATC
ILMN_1379750	0003450450	negative	permuted_negative		TGCAACAACTATCAGAGACACGACCTCACCAACAGCCCAGGGAACCCCCA
ILMN_1380077	0002570435	negative	permuted_negative		TGTGAAGCATTCGGCACTGGCAAGCTGACGGAGGGCTTTCTTGCCCTGCA
ILMN_1379943	0002970152	negative	permuted_negative		CAGATATTTTGGCTGCCGTCTGGAAGGACGGCTGCTCCGAGTGGTGATGT
ILMN_1379566	0000070364	negative	permuted_negative		GGATGTTTGCTCGAGGAGTGGATATGCTAGGGCGAGCGTGTAGCTTGCTG
ILMN_1380120	0002650458	negative	permuted_negative		CTCAGGATGGGCGGAACACAGGCAAAAGGGGATGGCACTGCATCCTGAGC
ILMN_1379671	0005670601	negative	permuted_negative		ACGGGAAACTCTTCCAACGGCACCGGACTGAATTGTGGAAGTGTTAAGCC
ILMN_1379463	0002970050	negative	permuted_negative		AGAGTCAAGTGGATTGGGGAGCGGCTGGGGAGGAGTCTGGAGTGTTTGAG
ILMN_1379387	0003610736	negative	permuted_negative		GGTGAGCAGGGTTGTAAGGAACAATGCAACTGGACGCAGGGGCTGCGGCC
ILMN_1379485	0001690072	negative	permuted_negative		ACATTCGTGAGCCAGAATTGGAGAGGAGGGGATCTCCCCGGCATAATAAG
ILMN_1379963	0005910619	negative	permuted_negative		AAGCACAAAGCCGCCAAAGGGACGCGCCAAGAGCGGAGTTTTGAAGCAGA
ILMN_1379639	0006130471	negative	permuted_negative		GCGCCCTGGACACACGGGTTGTGAATGATCGAGTGAGGGAGTTAGAAGGC
ILMN_1379927	0004560685	negative	permuted_negative		TCACCATCCGTGCTCTAATGACCCTATCCTCCATCGTTTGACAGGGTGGG
ILMN_1379745	0003940520	negative	permuted_negative		GAAGCACACTCACTGACTCACGGGTCTCAATATGATGGAGATGAACTCCC
ILMN_1380255	0006520040	negative	permuted_negative		CCGACCTGTTTGGTCCTCTCAACCTCATTGATTGCGCCTGTTGATGTGCC
ILMN_1380012	0003520551	negative	permuted_negative		GTCTCAACCGCTCCCATTTACGCAGCTTCCTATATAGCCCAGCTAAACCT
ILMN_1379395	0002030504	negative	permuted_negative		GCAAGCATGATCTAGCACTCCCCCTCGCATCCGGAAGCAGGTAAGAACAA
ILMN_1379845	0001990039	negative	permuted_negative		GGTTGCCCCCAGGGATGACCTGGTATTTAGACCCAAAAGATTCTCAAGCA
ILMN_1379830	0005050500	negative	permuted_negative		TCTTAGTGGACCGACGAGAAGTGGGTAGTATTGTGCTGTTGGGGCCCTCC
ILMN_1379685	0006110402	negative	permuted_negative		CCAGGAGAGAAAGGAAACTCCCCAGGGAGAGCGAAAGATGTACCAGTTCT
ILMN_1379629	0000840706	negative	permuted_negative		TTCGGTTCTCTTACCCACCAGTGGAGCATTTCGAGCGCCGTCAGGTCCAC
ILMN_1379595	0000360528	negative	permuted_negative		TACTTCTCCGTGGCCATCGAGCCGTTTTCCAGAAGGTGAAGGATTTAGTC
ILMN_1380354	0002340139	negative	permuted_negative		ACCAAGTATCCAGCCCACACTGGGCAAAGGGGACTGAGTGCTGGTCTTGA
ILMN_2038792	0001410575	housekeeping	housekeeping	GI_19705430-S	TGAGAAGACCCCAGTGAGCGAGAAGGTCACCAAGTGCTGTAGTGGGTCCT
ILMN_2038793	0003290390	housekeeping	housekeeping	GI_19705430-S	CCCAGACAAGGAGAAGCAGATAAAGAAGCAAACGGCTCTCGCTGAGCTGG
ILMN_1379530	0003940484	negative	permuted_negative		TGGAACTGGTCACGCCTGTGGTCTTAAGCTGGACAAACCACACGCGGACA
ILMN_1379754	0006200600	negative	permuted_negative		AAAACACTCTAGGCCCTGATTGCTGGCTGGTGTTCGTCATGGCTTCACAT
ILMN_1380032	0002690411	negative	permuted_negative		ACACATTGCATCCCCGGACCCACACATAGTATTGGAAGACTGCAGCACCC
ILMN_1379904	0002760706	negative	permuted_negative		TTCAGACAGAAGCTCGCCGTGCTGGTTCGTGACAAGGCTCAGCTGCATTC
ILMN_1379578	0005270279	negative	permuted_negative		AAGACGTCTAAGCTGACAATGAGAGGTACTTTCGATGCCAGGCGATGGAC
ILMN_1380135	0001570048	negative	permuted_negative		GTGTCAGAATCCTGTGTATGGGGAAGGGCCAGCAGGCAGCACTTTACCTG
ILMN_1379391	0002350440	negative	permuted_negative		GATCCGGCTTCCGCTGCAAAATTACCTATCAGTTGGAGTTGTGCGCTCTC
ILMN_1379787	0002480152	negative	permuted_negative		CGCAAGCGAGGTTGAGGAAAGGTCCCCCTGGTGCCGCTCAGAGGAGAAAC
ILMN_1379545	0003120731	negative	permuted_negative		CGGCATCATGTTCATACTCCTGCCTCGTTGGGGGCAACAACTTATGGCCT
ILMN_1379966	0005720059	negative	permuted_negative		TCTCTGAGCCCAAAATGACGCGACCGAGATGCGCTGCGAGATCCCTTTCC
ILMN_1378266	0003140193	labeling	thrB	thrB	CATATGGAACGGCTCTCAGCGGAGCAGGCCCAACGATTCTCGTCATGACC
ILMN_1380333	0003440181	negative	permuted_negative		CAAGACTGGCAGGCAGAAGTTCTTCAGACCCGCAAATGCAAGAGTAGGCC
ILMN_1379569	0006350593	negative	permuted_negative		CTTGTCCCCGGTGTAGCCATAAGTTGGTCTCATTTCTTCAACGTTGCCAC
ILMN_1379923	0005290484	negative	permuted_negative		CCCGAACATCGCACTAGTTGAACGAATGGATGGCTACATGCACCAGGTAC
ILMN_1379718	0006130593	negative	permuted_negative		CAAAGGCAACTGGGCCCTGCACTACATGATCCGACCACTGGTCCGTCCAT
ILMN_1379730	0001190102	negative	permuted_negative		CTGATGGCCACTCTGCTTATCTCGACAGATGGTGTCAGGGTACACTGCAG
ILMN_1380073	0001050300	negative	permuted_negative		TTGAGCTCCACCAGCCGGTTCGCCGGGAGAAGGGCTTCGTCGAAGTGAGA
ILMN_1379449	0007000537	negative	permuted_negative		GAGATTAGGTCCGCTTGGGGTGCCTTTGATTCACCCAACCATGTCACTTG
ILMN_1379701	0001170497	negative	permuted_negative		AACCAGTCCCGATGTCTCGGTTGTCTCCACTCGGCGACACATACTACGAA
ILMN_1379484	0003610133	negative	permuted_negative		GGGCCCGAGACACCGTGACCTACAAAACCGCTTTAGATTAGGCAGTAGTT
ILMN_1379603	0006650242	negative	permuted_negative		ACACTGCGCAGTAGCCTTCCCTCGATTGTTCCTTTGAAGGGAGGATTGCC
ILMN_1379466	0003390044	negative	permuted_negative		CACAGTGGGTCTGCATGGTGACTGCTCAAAACGCTGAGTTAACCGTGCGA
ILMN_1379804	0006040131	negative	permuted_negative		AGGTGTCTTTGCGTGAGATTTCTCAGGGGGGCATTGCTGTGTGGGAGGGC
ILMN_1379859	0000520068	negative	permuted_negative		TGTAGGCTACGCCGCGGTAGGTTCCTGCCCCTTTTCAGTTTTTAGCTCTT
ILMN_1379525	0003940647	negative	permuted_negative		AGATGCGTGAAGGTCGGAGAAGGAGTTTGCCTGGACTGGGTCTGTTAAGT
ILMN_1379665	0003780301	negative	permuted_negative		TCACCTCTGGCAGTTCTTCAAACGACCTCGAGTGAACCTCCGACGGCTAT
ILMN_2038796	0004070397	housekeeping	housekeeping	GI_13592066-S	CCGCCAACGTCACATCAGGGTCCTCAAGCAGGTGGTGAACATCCCATCTT
ILMN_1379654	0005360022	negative	permuted_negative		GTCGTCGTCGCAATGCTACCCCTCTGTCAGAGGAGATGGTGCCTACAGTG
ILMN_1380090	0006220672	negative	permuted_negative		TTACTGCCTGTGCTTGATGCGTAGTCGCGCGTGATGAGTTAGATCATCTG
ILMN_1379496	0002650059	negative	permuted_negative		AGTCCAGCTGCAACTGTGGAAGGGGTACACCTCTGCAGTCAGCTGGTGAA
ILMN_1379759	0006420332	negative	permuted_negative		CAAACCGCATAAGGTGAATGTGGCTGTGTCTGTATCACCCAGGGGTAGCT
ILMN_1380237	0002340373	negative	permuted_negative		AGCCTTTGGTCTGACCAATCTGCGGTCACCTTTTGCAGCCTGATAACACG
ILMN_1379628	0003140504	negative	permuted_negative		GAGTAGTCTGGGCCAAGGCTTGCTATCCGCTTCCTGCCCTTCTAGACACT
ILMN_1379884	0000130347	negative	permuted_negative		AGCCGGGCTGCTGGCACAATGGCAGTTTGGAAAAGCAACCCGAACTTACA
ILMN_1380235	0000050551	negative	permuted_negative		CCAGAGTTGAGGGGGACAAAGCTGTGATCCCAACAGGAATGGACCACATG
ILMN_1379878	0002480050	negative	permuted_negative		TGGTTATGAACACCCGCTTCCGTCCTATTAGGTACTGGTGTAAGGTCCCT
ILMN_1379426	0005900563	negative	permuted_negative		GGAAAGTACCCCCAATTGTGCCCAGACTACTCCATAACGATCCTAGCTAC
ILMN_1380196	0000540093	negative	permuted_negative		CCAGACGAAAGCGAGAGTAGTACTTGGACTCCGCCGACGAGGACGCTATG
ILMN_1379935	0005900471	negative	permuted_negative		GGGGGAGGTAAACTTGTACACGGCAGGGTAAGGAGCAGGAAGATTTGCCA
ILMN_1379508	0006620075	negative	permuted_negative		TCTTCTAACGCAACGGGGCCATCCAGCCCGATTTTCTGCCAGGTTGGGTG
ILMN_1380219	0001690053	negative	permuted_negative		CTTTCAATGGAGTAGGCCGTGCCTGGGACGCGCTCGGCACAAACTGAAGC
ILMN_1380188	0006020452	negative	permuted_negative		CATCACGAACAGACAGCCCAGTAAATATCAAGAGGGTTCCGTACCTGCTG
ILMN_1379860	0007040026	negative	permuted_negative		TGTTCTGGTCATACAGGTCCCCACTTAGGCGTGGTAACGCTGGACACCGG
ILMN_1379727	0002450288	negative	permuted_negative		CCATGTGGACCTTGAGGATAAAGAGCAGCTTGCACCAGGTGTCCGGACGG
ILMN_1379900	0000070092	negative	permuted_negative		GTCTTTGGCGTCCGACCTAGCGCAGACATCATCCGCAGCGACATCCTCAA
ILMN_1379867	0006770487	negative	permuted_negative		GGGTGTTCGTCACTGTAGACTTCTGAATTACCTCATCACTGCAGCCTCTC
ILMN_2038797	0002970026	cy3_hyb	phage_lambda_genome:high		GAAGCATTCAGAGCAATTGAGGCAGCGTTGGTGAAGCACGATAATAATAT
ILMN_2038797	0002970026	low_stringency_hyb	phage_lambda_genome:pm		GAAGCATTCAGAGCAATTGAGGCAGCGTTGGTGAAGCACGATAATAATAT
ILMN_1379807	0000450292	negative	permuted_negative		GACGCCGACACCCCCCACATCACGTTCGGTGATTCCAGATACAATTGCAG
ILMN_1379593	0006350044	negative	permuted_negative		CTGTGCCACCCACAACACGAAGCGGGTGGGCTGAGAAATTCTTGAAGCGT
ILMN_1379808	0000520309	negative	permuted_negative		ATTATATGGAACGAGCTGGCAGCGCATAGAGCAACTAAGCCAGGGTGAGG
ILMN_1380192	0004060524	negative	permuted_negative		ACCTCTAAGCCAACCCGCGGTTTTACGAGAACCCTGCCAAGCGCTGCGGC
ILMN_1380078	0002810605	negative	permuted_negative		CTTGGTAGGCAAGCGTGAGAACACCATGGCTAATGGCTGACGAATGTGAA
ILMN_1380349	0004150504	negative	permuted_negative		AAAATCGGTACTGAGTACTGCGGCCATCTGTTAGGTCCACACTCGTGGCC
ILMN_1380066	0002260053	negative	permuted_negative		TCATTACCTGCTCTGGGCGATTGACGTTAGAAGAGGCTGCCACTGCACTC
ILMN_1380007	0002100484	negative	permuted_negative		GGATGTATGCTGGAGCTAGCTGTACAAGGGGCGTAGTCTTAGACGATTCT
ILMN_1379814	0002260487	negative	permuted_negative		GTCTCATCACACCCTGGACAGCAATGCCAACTAGAGCCGAAAGAAGATGT
ILMN_1379739	0006040497	negative	permuted_negative		AGACCGAGAGAGCAGCATCACCGAGTTACCCTCGCATCAGTTAATGCGCG
ILMN_1379991	0004670341	negative	permuted_negative		CCAGGCCCGCTCTTACCTAATGAAGAGAAATTGGCCGGGCCTCAGTCTCA
ILMN_1380372	0006940079	negative	permuted_negative		ATAGCAAGTGGAGTGTGAGCATCGAGACTGCCTAGGAACCAAATCCTGGA
ILMN_1379518	0001690463	negative	permuted_negative		AAGCAGACGGTGGCCCCAACCGGTTGTTCAGCCTTAACTTACCGGTGTTT
ILMN_1378267	0000670021	labeling	trpF	trpF	GGTGATGAAAAACCGGCGGATGTCGCTGCTCTTCGCAAGCTGACAGGCTG
ILMN_1379879	0001340324	negative	permuted_negative		GATGTCAGGGTTACAAATATCCACCCCGGGCAACCACAGACCGGCCAAGG
ILMN_1379955	0002320364	negative	permuted_negative		AAACTCAAGAAGGGCGACACACTAAGCTGGGTAACGAGTTCAAGGAGGAG
ILMN_1379608	0002940047	negative	permuted_negative		TCCAGAAGTAAGGCTGGAACACGCCCGGGATCAGGATAATGAGCTCACCT
ILMN_1379753	0000130411	negative	permuted_negative		CACGCTACCACACTCCCTCTGAAGTCAGCTTGATAGACTAGGGTAGGCAG
ILMN_1379965	0005290427	negative	permuted_negative		ATGCGTCTCTTCGTAGCCTTAGGTGTTGCTTTCGTCCTTGGTCAGAGCTG
ILMN_1380164	0002470170	negative	permuted_negative		ATCCTAGACATGGGGCCTACTGCACACTGTACTGGACACTGCTTCAATGT
ILMN_1379433	0003190064	negative	permuted_negative		AGAGTGGTGACAGGGGAACCCCCCAGTTCACGTAGAAGCATAGAAGCGAG
ILMN_1379482	0004230121	negative	permuted_negative		AGACTGCACATGCCCAGTATGTCAGGTGACGAGGAACCAGCGACACACTG
ILMN_1379590	0000450722	negative	permuted_negative		GCTGCTGACTTAGGGCCTAGCGTTAAAGAACCCAAGATACTGTGGGCGAT
ILMN_1380206	0005670008	negative	permuted_negative		GAACGTTCCGTAGTGAATCCCGCTCAAGCTCTAAGTCAGGCCCAGTTGTC
ILMN_1379926	0000460541	negative	permuted_negative		GGGGGAGACGGGGGATATGTAGTGGGTGGCAAAAGGAGAAAGGAGCGTCT
ILMN_1379624	0004850097	negative	permuted_negative		CCCATGAGAGTGGAAGATAAGGCTGGAAACAACATGGCCAAGAATGGGCT
ILMN_1380002	0002370097	negative	permuted_negative		TGGACGCCACCATCGTTGCCAGTGCGACCTGTTGTTCCACAAGGGTCAGC
ILMN_1380045	0005910088	negative	permuted_negative		CCCCAGACCCCACCTGACGACACCCATAACACAACAAGGGATGAAACGAC
ILMN_1379929	0002510075	negative	permuted_negative		AAGCCAGGGTCGGACGTAGGGGAAGGTATAGGCCAGTCGGAATGAGGACA
ILMN_1380112	0004780605	negative	permuted_negative		AAGACTGTTTCAGCATTCTACTGTGCTCCGTGCTCAGGCGGTCTCCAAGG
ILMN_1379803	0004730056	negative	permuted_negative		GGACCTGGACTGGCTCTGGCGTTTGGGGTAAAGAGTGGTGTCTGTGACAG
ILMN_1380177	0000460242	negative	permuted_negative		CCCAACCTCAGAGTGTCTAGGAGTGTTGGTATCTTGGGAACAGCAGGGGT
ILMN_1379647	0004200020	negative	permuted_negative		TTTTGGAATTGCTGACCTCTACCTGGGACTCTGGTTGTAGAGGCAGGTGA
ILMN_1379459	0005130181	negative	permuted_negative		CAACAAAGGGCTTCCGCCTGCTTGTCGTGGGGTGTCTGCAATGGACTCCA
ILMN_1379492	0004210021	negative	permuted_negative		ACTCAGCACCATCTCGGCAGTTTGGCCGTTCCGCCCTATAGGACTCAGGC
ILMN_1379747	0003360390	negative	permuted_negative		CTTGCTGTACCAGGGGGACTCTCAGGTGTAAGTGTAAGTCTATCCACGCT
ILMN_1379446	0003780014	negative	permuted_negative		CTTAGGCTTATGCACTGGAAGAGAGAACCTGATAACAACTCACGCCCGAG
ILMN_1379777	0001660687	negative	permuted_negative		CCTTGAGGGAGAGGCAAACCTAAACGGGTTGAGTACCCGTTCGCGTTGAC
ILMN_1379980	0005860050	negative	permuted_negative		TGCCCTAGAGTGGTTAGGGTACCTGGGGCTGGCCTTGGTAAGACAGTCAC
ILMN_1379489	0006370112	negative	permuted_negative		AGAGCTCACGGAGCATGATTCCATGCCAATGCGGCCCCAGTAAGGGCCTT
ILMN_1379675	0005390168	negative	permuted_negative		GTCACTGAGCCAGTGCGACTAGCGCCATGTTTACATTACTTACCTTAGCG
ILMN_1380016	0006400072	negative	permuted_negative		GTACTGATCAAACGTTAATCACCCCATGTGCTGTCAGCCACACCGCACAG
ILMN_1380224	0000050056	negative	permuted_negative		CTGCACAGTAGGGGGTTATTCCGCCCGTCTGGATCTGAGTTGGTCTTCTG
ILMN_1379644	0002760358	negative	permuted_negative		CCTGGCTCTCCTGCGAGATTAGTAGCTTAGGACCACTTGAGGTTCGACTG
ILMN_1380125	0006590671	negative	permuted_negative		TAATGCTCTCAACCATTCCCTGGGTGATGCGCGATGACCTGTTGAGTCAG
ILMN_1380021	0004210465	negative	permuted_negative		AGACAACAAGTGTGGCCGCTTCATGCGTCGGCCTTCCTCGCCTGGGTGCT
ILMN_1380325	0001990300	negative	permuted_negative		GCCGAATAGGGAGCAAGAGAGGGGGAAGATCCAAGAGAACTGGAATCGCG
ILMN_1380318	0004230010	negative	permuted_negative		CACTTCACCATAGGCCCGTCTCTCCAAGTGGTCCAATGATATAAGCGCAG
ILMN_1380018	0003140670	negative	permuted_negative		AACTGACCTGTGCTGGTGACTCGGCTGGCAAGAAATTACAGTATTGGGCT
ILMN_1380096	0006940102	negative	permuted_negative		AGCCCAACCCTCGGGTCACTACCACCCCCAATTTGGCAACTCACGTCCAT
ILMN_1379583	0006860014	negative	permuted_negative		AGAGCGGGCCCATCAGACCCTGGAGATCTGGACTTGGACTCTTCGCTTGG
ILMN_1379766	0006290059	negative	permuted_negative		AGGCTCCCTACCGTATGCGCGTGTTTCTGACAGACGGTCTTCTGAATGGG
ILMN_1379945	0001580673	negative	permuted_negative		GAATTACACGGCTTCTCTGGGGACCTCTTGACGACGGGACCCCTTACCAG
ILMN_1379796	0001450519	negative	permuted_negative		GAGCTCAGGTGTGACGCAGAATTCCATTGCAGCCTGCACGCTGCAAGACA
[Columns]
Name	Level	Visible
Species	all	
Source	all	
Search_Key	all	
Transcript	probe	
ILMN_Gene	all	
Source_Reference_ID	probe	
RefSeq_ID	probe	
Unigene_ID	all	
Entrez_Gene_ID	all	
GI	probe	
Accession	probe	
Symbol	all	
Protein_Product	probe	
Probe_Id	probe	
Array_Address_Id	probe	
Probe_Type	probe	
Probe_Start	probe	
Probe_Sequence	probe	
Chromosome	all	
Probe_Chr_Orientation	all	
Probe_Coordinates	probe	
Definition	all	
Ontology_Component	all	
Ontology_Process	all	
Ontology_Function	all	
Synonyms	all	
